DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.166e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	6.0433	0.0487

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1372 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12710777	3L_12710777_SNP [dm3] 3L_12717677_SNP [dm6]	G	T	7.379e^-7	0.252	INTERGENIC
3L	12710782	3L_12710782_SNP [dm3] 3L_12717682_SNP [dm6]	G	A	7.838e^-7	0.252	INTERGENIC
2R	15159019	2R_15159019_SNP [dm3] 2R_19271514_SNP [dm6]	A	T	1.430e^-6	0.252	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	10621372	2R_10621372_SNP [dm3] 2R_14733867_SNP [dm6]	C	A	1.526e^-6	0.252	INTERGENIC
2R	10715639	2R_10715639_SNP [dm3] 2R_14828134_SNP [dm6]	A	T	1.543e^-6	0.252	INTERGENIC
2R	15158993	2R_15158993_DEL [dm3] 2R_19271488_DEL [dm6]	CA	T	1.708e^-6	0.252	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10705677	2R_10705677_SNP [dm3] 2R_14818172_SNP [dm6]	G	T	1.724e^-6	0.252	NON_SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10719564	2R_10719564_SNP [dm3] 2R_14832059_SNP [dm6]	G	A	1.724e^-6	0.252	UPSTREAM CG10205 INTERGENIC
2R	10701426	2R_10701426_SNP [dm3] 2R_14813921_SNP [dm6]	G	A	1.782e^-6	0.252	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10721948	2R_10721948_SNP [dm3] 2R_14834443_SNP [dm6]	C	A	1.804e^-6	0.252	DOWNSTREAM CG10205 INTERGENIC
2R	10713301	2R_10713301_SNP [dm3] 2R_14825796_SNP [dm6]	T	G	1.816e^-6	0.252	INTERGENIC
2R	10368189	2R_10368189_SNP [dm3] 2R_14480684_SNP [dm6]	G	C	1.829e^-6	0.252	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	15159014	2R_15159014_SNP [dm3] 2R_19271509_SNP [dm6]	G	T	1.878e^-6	0.252	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	10608747	2R_10608747_SNP [dm3] 2R_14721242_SNP [dm6]	C	T	1.881e^-6	0.252	INTERGENIC	TF binding site mE1_TFBS_inv
2R	15159096	2R_15159096_SNP [dm3] 2R_19271591_SNP [dm6]	G	C	2.198e^-6	0.254	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	10700525	2R_10700525_SNP [dm3] 2R_14813020_SNP [dm6]	G	A	2.246e^-6	0.254	INTERGENIC	regulatory region REDfly_CRMs
2R	13747284	2R_13747284_SNP [dm3] 2R_17859779_SNP [dm6]	C	T	2.414e^-6	0.254	SYNONYMOUS_CODING olf186-F UPSTREAM CG14490
2R	10749489	2R_10749489_SNP [dm3] 2R_14861984_SNP [dm6]	C	T	2.436e^-6	0.254	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10608749	2R_10608749_SNP [dm3] 2R_14721244_SNP [dm6]	C	G	5.085e^-6	0.502	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10608696	2R_10608696_SNP [dm3] 2R_14721191_SNP [dm6]	G	A	6.733e^-6	0.631	INTERGENIC
2R	15861441	2R_15861441_SNP [dm3] 2R_19973936_SNP [dm6]	A	G	7.594e^-6	0.67	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15159007	2R_15159007_SNP [dm3] 2R_19271502_SNP [dm6]	G	A	8.188e^-6	0.67	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	15864853	2R_15864853_SNP [dm3] 2R_19977348_SNP [dm6]	G	C	8.211e^-6	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10709770	2R_10709770_SNP [dm3] 2R_14822265_SNP [dm6]	C	T	1.077e^-5	0.822	INTERGENIC
X	6693235	X_6693235_SNP [dm3] X_6799202_SNP [dm6]	C	T	1.169e^-5	0.822	INTRON C3G
2L	6813292	2L_6813292_SNP [dm3] 2L_6813292_SNP [dm6]	G	C	1.188e^-5	0.822	DOWNSTREAM CR44081 INTERGENIC
2R	1049371	2R_1049371_SNP [dm3] 2R_5161866_SNP [dm6]	T	C	1.336e^-5	0.822	INTERGENIC	transposable element FlyBase
2R	10674472	2R_10674472_SNP [dm3] 2R_14786967_SNP [dm6]	A	G	1.371e^-5	0.822	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	10675354	2R_10675354_SNP [dm3] 2R_14787849_SNP [dm6]	C	A	1.371e^-5	0.822	INTRON kn	TF binding site BDTNP1_TFBS_da
2L	6813096	2L_6813096_SNP [dm3] 2L_6813096_SNP [dm6]	A	C	1.402e^-5	0.822	EXON CR44081
X	16159938	X_16159938_SNP [dm3] X_16265905_SNP [dm6]	T	C	1.411e^-5	0.822	INTRON CG12507
2R	10787579	2R_10787579_SNP [dm3] 2R_14900074_SNP [dm6]	T	C	1.437e^-5	0.822	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10616116	2R_10616116_SNP [dm3] 2R_14728611_SNP [dm6]	G	A	1.447e^-5	0.822	INTERGENIC
2R	14222034	2R_14222034_SNP [dm3] 2R_18334529_SNP [dm6]	A	C	1.552e^-5	0.83	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16159941	X_16159941_MNP [dm3] X_16265908_MNP [dm6]	CAT	TTG	1.571e^-5	0.83	INTRON CG12507
2R	10787362	2R_10787362_SNP [dm3] 2R_14899857_SNP [dm6]	T	C	1.605e^-5	0.83	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10787392	2R_10787392_SNP [dm3] 2R_14899887_SNP [dm6]	A	T	1.665e^-5	0.83	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10154268	2R_10154268_SNP [dm3] 2R_14266763_SNP [dm6]	T	C	1.762e^-5	0.83	INTRON CG8547
2R	10721104	2R_10721104_SNP [dm3] 2R_14833599_SNP [dm6]	G	A	1.784e^-5	0.83	NON_SYNONYMOUS_CODING CG10205 UTR_3_PRIME CG10205
2R	10666546	2R_10666546_SNP [dm3] 2R_14779041_SNP [dm6]	T	C	1.804e^-5	0.83	INTRON kn
3L	1845109	3L_1845109_SNP [dm3] 3L_1845109_SNP [dm6]	A	G	1.814e^-5	0.83	INTERGENIC
2L	17888894	2L_17888894_SNP [dm3] 2L_17888894_SNP [dm6]	C	T	1.920e^-5	0.857	INTERGENIC
2L	7270498	2L_7270498_SNP [dm3] 2L_7270498_SNP [dm6]	G	T	1.989e^-5	0.868	INTRON Wnt4
2R	14222022	2R_14222022_SNP [dm3] 2R_18334517_SNP [dm6]	G	A	2.161e^-5	0.921	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3372773	2R_3372773_SNP [dm3] 2R_7485268_SNP [dm6]	A	G	2.345e^-5	0.978	SYNONYMOUS_CODING wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10460322	2R_10460322_SNP [dm3] 2R_14572817_SNP [dm6]	C	A	2.421e^-5	0.984	SYNONYMOUS_CODING LamC INTRON ttv
2L	2425224	2L_2425224_SNP [dm3] 2L_2425224_SNP [dm6]	C	T	2.466e^-5	0.984	DOWNSTREAM CG9886 & 1 other INTERGENIC
2R	15863357	2R_15863357_SNP [dm3] 2R_19975852_SNP [dm6]	G	A	2.766e^-5	1	INTERGENIC
2R	10676596	2R_10676596_SNP [dm3] 2R_14789091_SNP [dm6]	G	T	2.866e^-5	1	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16159947	X_16159947_SNP [dm3] X_16265914_SNP [dm6]	C	T	2.878e^-5	1	INTRON CG12507
2R	3867405	2R_3867405_SNP [dm3] 2R_7979900_SNP [dm6]	T	A	2.892e^-5	1	SYNONYMOUS_CODING ACC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20465379	X_20465379_DEL [dm3] X_20594352_DEL [dm6]	GTGCGTGTCCTTGCGTCTGT...	G	2.924e^-5	1	INTRON RunxA
3L	12327923	3L_12327923_SNP [dm3] 3L_12334823_SNP [dm6]	A	G	2.980e^-5	1	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
2L	6909521	2L_6909521_SNP [dm3] 2L_6909521_SNP [dm6]	G	A	3.048e^-5	1	SYNONYMOUS_CODING Rat1	TF binding site mE1_TFBS_sens
2R	10366370	2R_10366370_SNP [dm3] 2R_14478865_SNP [dm6]	T	C	3.048e^-5	1	DOWNSTREAM CR44462 INTERGENIC	TF binding site mE1_TFBS_cad
2L	6813219	2L_6813219_DEL [dm3] 2L_6813219_DEL [dm6]	ATGCTACCTCAATCA...	A	3.103e^-5	1	DOWNSTREAM CR44081 INTERGENIC
2R	1006333	2R_1006333_SNP [dm3] 2R_5118828_SNP [dm6]	T	C	3.208e^-5	1	INTRON gus
2R	12198042	2R_12198042_SNP [dm3] 2R_16310537_SNP [dm6]	C	T	3.222e^-5	1	INTRON Nox	TF binding site mE1_TFBS_chinmo
3R	7989751	3R_7989751_SNP [dm3] 3R_12164029_SNP [dm6]	C	T	3.230e^-5	1	NON_SYNONYMOUS_CODING Cpn
2L	18000246	2L_18000246_SNP [dm3] 2L_18000246_SNP [dm6]	A	G	3.244e^-5	1	INTERGENIC
X	18351380	X_18351380_SNP [dm3] X_18457347_SNP [dm6]	T	C	3.268e^-5	1	INTRON CG32547
2R	10666534	2R_10666534_SNP [dm3] 2R_14779029_SNP [dm6]	G	A	3.325e^-5	1	INTRON kn
2L	19806769	2L_19806769_SNP [dm3] 2L_19806769_SNP [dm6]	C	T	3.611e^-5	1	INTRON sick
2R	3373740	2R_3373740_SNP [dm3] 2R_7486235_SNP [dm6]	G	A	3.734e^-5	1	UTR_5_PRIME wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2685245	2L_2685245_SNP [dm3] 2L_2685245_SNP [dm6]	T	C	3.783e^-5	1	INTRON CG31690
2R	15869005	2R_15869005_SNP [dm3] 2R_19981500_SNP [dm6]	T	C	3.948e^-5	1	UPSTREAM CG8654 INTRON CG8654	TF binding site mE1_TFBS_cad
2R	1049533	2R_1049533_SNP [dm3] 2R_5162028_SNP [dm6]	T	C	4.030e^-5	1	INTERGENIC	transposable element FlyBase
2R	14222033	2R_14222033_SNP [dm3] 2R_18334528_SNP [dm6]	T	A	4.090e^-5	1	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20465406	X_20465406_DEL [dm3] X_20594379_DEL [dm6]	AGTGGTTAG	A	4.159e^-5	1	INTRON RunxA
2R	10154275	2R_10154275_SNP [dm3] 2R_14266770_SNP [dm6]	A	G	4.184e^-5	1	INTRON CG8547
2L	3792077	2L_3792077_SNP [dm3] 2L_3792077_SNP [dm6]	A	C	4.272e^-5	1	INTRON CG3921
X	11840457	X_11840457_SNP [dm3] X_11946424_SNP [dm6]	G	T	4.282e^-5	1	INTRON cac
2R	15595811	2R_15595811_SNP [dm3] 2R_19708306_SNP [dm6]	C	A	4.320e^-5	1	INTERGENIC
3R	15559644	3R_15559644_SNP [dm3] 3R_19733922_SNP [dm6]	A	C	4.322e^-5	1	INTRON GluClalpha
2L	3986342	2L_3986342_SNP [dm3] 2L_3986342_SNP [dm6]	C	T	4.521e^-5	1	INTRON fred
3L	9462464	3L_9462464_DEL [dm3] 3L_9469364_DEL [dm6]	GTTG	G	4.535e^-5	1	INTRON CG44838	TF binding site BDTNP1_TFBS_dl
2R	12279590	2R_12279590_INS [dm3] 2R_16392085_INS [dm6]	A	AA	4.647e^-5	1	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	12329056	3R_12329056_SNP [dm3] 3R_16503334_SNP [dm6]	T	G	4.674e^-5	1	INTRON CG42342	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	15976159	2L_15976159_DEL [dm3] 2L_15976159_DEL [dm6]	ACAAG	A	4.682e^-5	1	INTERGENIC
2R	14706594	2R_14706594_DEL [dm3] 2R_18819089_DEL [dm6]	TTG	T	4.823e^-5	1	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16798884	3L_16798884_SNP [dm3] 3L_16805784_SNP [dm6]	A	T	4.941e^-5	1	INTRON CG9674 & 1 other	TF binding site mE1_TFBS_Trl
3R	15559662	3R_15559662_SNP [dm3] 3R_19733940_SNP [dm6]	A	G	4.954e^-5	1	INTRON GluClalpha
2L	2685254	2L_2685254_SNP [dm3] 2L_2685254_SNP [dm6]	T	C	5.060e^-5	1	INTRON CG31690
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	5.122e^-5	1	INTRON CG31690
3L	18295612	3L_18295612_SNP [dm3] 3L_18302512_SNP [dm6]	T	C	5.152e^-5	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	18295639	3L_18295639_SNP [dm3] 3L_18302539_SNP [dm6]	T	A	5.191e^-5	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	10666533	2R_10666533_SNP [dm3] 2R_14779028_SNP [dm6]	G	A	5.262e^-5	1	INTRON kn
2L	2685239	2L_2685239_SNP [dm3] 2L_2685239_SNP [dm6]	A	C	5.303e^-5	1	INTRON CG31690
2L	1260917	2L_1260917_INS [dm3] 2L_1260917_INS [dm6]	A	AA	5.318e^-5	1	INTRON robo3
2R	10608720	2R_10608720_SNP [dm3] 2R_14721215_SNP [dm6]	C	G	5.323e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	5970814	X_5970814_SNP [dm3] X_6076781_SNP [dm6]	G	A	5.617e^-5	1	SYNONYMOUS_CODING CG4666
3R	10873414	3R_10873414_SNP [dm3] 3R_15047692_SNP [dm6]	C	T	5.679e^-5	1	INTERGENIC
2R	17182549	2R_17182549_SNP [dm3] 2R_21295044_SNP [dm6]	T	G	5.718e^-5	1	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	18295617	3L_18295617_SNP [dm3] 3L_18302517_SNP [dm6]	T	A	5.730e^-5	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	3239513	2L_3239513_SNP [dm3] 2L_3239513_SNP [dm6]	T	A	5.732e^-5	1	INTERGENIC
3R	12327632	3R_12327632_SNP [dm3] 3R_16501910_SNP [dm6]	G	A	5.742e^-5	1	UPSTREAM decay & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10341078	2R_10341078_SNP [dm3] 2R_14453573_SNP [dm6]	G	A	5.932e^-5	1	INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	3277717	X_3277717_SNP [dm3] X_3383684_SNP [dm6]	C	A	6.198e^-5	1	INTRON dm & 1 other
3R	12326543	3R_12326543_SNP [dm3] 3R_16500821_SNP [dm6]	C	T	6.554e^-5	1	SYNONYMOUS_CODING decay	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	15299127	2R_15299127_SNP [dm3] 2R_19411622_SNP [dm6]	A	G	6.571e^-5	1	UPSTREAM hts INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	26807019	3R_26807019_SNP [dm3] 3R_30981297_SNP [dm6]	T	C	6.636e^-5	1	INTRON 5-HT7
3L	18012780	3L_18012780_SNP [dm3] 3L_18019680_SNP [dm6]	G	A	6.768e^-5	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	11919034	2R_11919034_SNP [dm3] 2R_16031529_SNP [dm6]	C	A	7.028e^-5	1	UPSTREAM SP2353 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	18295632	3L_18295632_SNP [dm3] 3L_18302532_SNP [dm6]	A	T	7.087e^-5	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	11850097	2R_11850097_SNP [dm3] 2R_15962592_SNP [dm6]	G	A	7.296e^-5	1	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
X	9584351	X_9584351_SNP [dm3] X_9690318_SNP [dm6]	A	G	7.351e^-5	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	7365466	X_7365466_SNP [dm3] X_7471433_SNP [dm6]	G	T	7.363e^-5	1	INTERGENIC
3L	21858162	3L_21858162_SNP [dm3] 3L_21865062_SNP [dm6]	C	G	7.513e^-5	1	INTRON mub
2L	15963589	2L_15963589_SNP [dm3] 2L_15963589_SNP [dm6]	G	C	7.563e^-5	1	INTERGENIC
2R	15595812	2R_15595812_SNP [dm3] 2R_19708307_SNP [dm6]	G	A	7.601e^-5	1	INTERGENIC
2L	7270505	2L_7270505_SNP [dm3] 2L_7270505_SNP [dm6]	C	G	7.620e^-5	1	INTRON Wnt4
3L	18295609	3L_18295609_SNP [dm3] 3L_18302509_SNP [dm6]	A	G	7.774e^-5	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	9014888	2L_9014888_SNP [dm3] 2L_9014888_SNP [dm6]	C	T	7.788e^-5	1	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17298636	2R_17298636_SNP [dm3] 2R_21411131_SNP [dm6]	T	A	7.902e^-5	1	INTRON Sdc
2R	17839218	2R_17839218_SNP [dm3] 2R_21951713_SNP [dm6]	A	G	7.948e^-5	1	SYNONYMOUS_CODING CG13488 UTR_5_PRIME CG13488 INTRON CG13488
2R	15595908	2R_15595908_SNP [dm3] 2R_19708403_SNP [dm6]	A	C	7.970e^-5	1	INTERGENIC
2R	17024403	2R_17024403_SNP [dm3] 2R_21136898_SNP [dm6]	C	T	7.971e^-5	1	INTRON Magi	TF binding site mE1_TFBS_sens
3L	8911315	3L_8911315_SNP [dm3] 3L_8918215_SNP [dm6]	G	A	8.243e^-5	1	INTRON Tsp66E
3R	15559821	3R_15559821_DEL [dm3] 3R_19734099_DEL [dm6]	TATTTT	T	8.261e^-5	1	INTRON GluClalpha
2R	11740074	2R_11740074_SNP [dm3] 2R_15852569_SNP [dm6]	A	G	8.325e^-5	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21061300	X_21061300_SNP [dm3] X_21190273_SNP [dm6]	T	C	8.331e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14706601	2R_14706601_DEL [dm3] 2R_18819096_DEL [dm6]	TTTAAACCAAGCCGTTATCA...	T	8.382e^-5	1	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7270534	2L_7270534_SNP [dm3] 2L_7270534_SNP [dm6]	A	C	8.383e^-5	1	INTRON Wnt4
3L	21057119	3L_21057119_SNP [dm3] 3L_21064019_SNP [dm6]	G	A	8.476e^-5	1	UTR_5_PRIME siz INTRON siz
2L	15600941	2L_15600941_SNP [dm3] 2L_15600941_SNP [dm6]	C	T	8.654e^-5	1	INTERGENIC
2R	15462205	2R_15462205_SNP [dm3] 2R_19574700_SNP [dm6]	T	A	8.845e^-5	1	INTRON sm
3R	24867568	3R_24867568_SNP [dm3] 3R_29041846_SNP [dm6]	T	A	8.947e^-5	1	INTRON Pkc98E
2L	2324628	2L_2324628_DEL [dm3] 2L_2324628_DEL [dm6]	ACCAACCCATGCCATA...	A	9.237e^-5	1	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_cad
2R	10786122	2R_10786122_SNP [dm3] 2R_14898617_SNP [dm6]	C	A	9.283e^-5	1	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20739061	2L_20739061_SNP [dm3] 2L_20739061_SNP [dm6]	A	T	9.294e^-5	1	INTRON Fs_2_Ket
2R	10180722	2R_10180722_SNP [dm3] 2R_14293217_SNP [dm6]	G	A	9.388e^-5	1	UTR_3_PRIME Ih DOWNSTREAM Ih INTRON Ih
2R	13707940	2R_13707940_SNP [dm3] 2R_17820435_SNP [dm6]	T	A	9.402e^-5	1	INTRON grh	transposable element FlyBase
3L	12918484	3L_12918484_SNP [dm3] 3L_12925384_SNP [dm6]	T	C	9.454e^-5	1	INTERGENIC
2R	3590819	2R_3590819_SNP [dm3] 2R_7703314_SNP [dm6]	T	C	9.499e^-5	1	UTR_3_PRIME CG30493 DOWNSTREAM CG34216
X	16978700	X_16978700_SNP [dm3] X_17084667_SNP [dm6]	A	G	9.555e^-5	1	INTRON CG8945
2R	15857933	2R_15857933_SNP [dm3] 2R_19970428_SNP [dm6]	A	G	9.564e^-5	1	INTERGENIC
2L	2685255	2L_2685255_SNP [dm3] 2L_2685255_SNP [dm6]	T	C	9.608e^-5	1	INTRON CG31690
3L	1242605	3L_1242605_SNP [dm3] 3L_1242605_SNP [dm6]	G	C	9.614e^-5	1	NON_SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7932800	3L_7932800_SNP [dm3] 3L_7939700_SNP [dm6]	T	C	9.650e^-5	1	INTERGENIC
2L	7044476	2L_7044476_SNP [dm3] 2L_7044476_SNP [dm6]	T	C	9.771e^-5	1	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2861710	X_2861710_SNP [dm3] X_2967677_SNP [dm6]	T	A	1.000e^-4	1	INTRON kirre & 1 other
X	6936950	X_6936950_SNP [dm3] X_7042917_SNP [dm6]	C	T	1.008e^-4	1	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	17182141	2R_17182141_SNP [dm3] 2R_21294636_SNP [dm6]	C	A	1.011e^-4	1	SYNONYMOUS_CODING CG9752 UPSTREAM Sgf29 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	5897342	2R_5897342_SNP [dm3] 2R_10009837_SNP [dm6]	A	G	1.020e^-4	1	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14247680	2L_14247680_DEL [dm3] 2L_14247680_DEL [dm6]	TAAAGTA	C	1.021e^-4	1	INTERGENIC
2R	17775940	2R_17775940_SNP [dm3] 2R_21888435_SNP [dm6]	G	A	1.054e^-4	1	INTRON Fili
X	15060324	X_15060324_SNP [dm3] X_15166291_SNP [dm6]	T	A	1.055e^-4	1	INTERGENIC
X	15060333	X_15060333_SNP [dm3] X_15166300_SNP [dm6]	A	G	1.055e^-4	1	INTERGENIC
3R	23979487	3R_23979487_SNP [dm3] 3R_28153765_SNP [dm6]	G	A	1.064e^-4	1	INTRON CG34354
2L	17923262	2L_17923262_SNP [dm3] 2L_17923262_SNP [dm6]	G	C	1.070e^-4	1	INTERGENIC
2R	14010795	2R_14010795_SNP [dm3] 2R_18123290_SNP [dm6]	G	A	1.083e^-4	1	INTRON stau	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	17883800	3L_17883800_SNP [dm3] 3L_17890700_SNP [dm6]	T	C	1.088e^-4	1	SYNONYMOUS_CODING CG7402
2L	7270389	2L_7270389_SNP [dm3] 2L_7270389_SNP [dm6]	G	A	1.092e^-4	1	INTRON Wnt4
3L	1242662	3L_1242662_SNP [dm3] 3L_1242662_SNP [dm6]	A	G	1.103e^-4	1	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15436212	2R_15436212_SNP [dm3] 2R_19548707_SNP [dm6]	C	T	1.110e^-4	1	INTRON sm
2R	11740069	2R_11740069_SNP [dm3] 2R_15852564_SNP [dm6]	C	G	1.125e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740081	2R_11740081_DEL [dm3] 2R_15852576_DEL [dm6]	GAA	T	1.125e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740085	2R_11740085_SNP [dm3] 2R_15852580_SNP [dm6]	A	T	1.125e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740089	2R_11740089_INS [dm3] 2R_15852584_INS [dm6]	AC	TTA	1.125e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740096	2R_11740096_SNP [dm3] 2R_15852591_SNP [dm6]	T	C	1.125e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740118	2R_11740118_SNP [dm3] 2R_15852613_SNP [dm6]	C	G	1.125e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2876744	X_2876744_SNP [dm3] X_2982711_SNP [dm6]	T	C	1.144e^-4	1	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15965110	2L_15965110_SNP [dm3] 2L_15965110_SNP [dm6]	C	G	1.152e^-4	1	INTERGENIC
2R	10453850	2R_10453850_SNP [dm3] 2R_14566345_SNP [dm6]	T	C	1.167e^-4	1	INTRON ttv
2R	7475262	2R_7475262_SNP [dm3] 2R_11587757_SNP [dm6]	C	A	1.179e^-4	1	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
X	8730542	X_8730542_SNP [dm3] X_8836509_SNP [dm6]	T	C	1.186e^-4	1	EXON CR45537
3R	12685052	3R_12685052_SNP [dm3] 3R_16859330_SNP [dm6]	C	A	1.191e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18767340	2L_18767340_SNP [dm3] 2L_18767340_SNP [dm6]	G	T	1.192e^-4	1	INTRON ham
2R	15141308	2R_15141308_SNP [dm3] 2R_19253803_SNP [dm6]	T	C	1.198e^-4	1	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10630394	2L_10630394_SNP [dm3] 2L_10630394_SNP [dm6]	G	A	1.206e^-4	1	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6813187	2L_6813187_SNP [dm3] 2L_6813187_SNP [dm6]	T	C	1.221e^-4	1	DOWNSTREAM CR44081 INTERGENIC
2L	2685316	2L_2685316_SNP [dm3] 2L_2685316_SNP [dm6]	A	C	1.229e^-4	1	INTRON CG31690
2R	8904984	2R_8904984_SNP [dm3] 2R_13017479_SNP [dm6]	C	T	1.258e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26807021	3R_26807021_SNP [dm3] 3R_30981299_SNP [dm6]	C	G	1.261e^-4	1	INTRON 5-HT7
3R	9767807	3R_9767807_SNP [dm3] 3R_13942085_SNP [dm6]	T	C	1.274e^-4	1	DOWNSTREAM Art9 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	7475070	2R_7475070_SNP [dm3] 2R_11587565_SNP [dm6]	A	T	1.276e^-4	1	SYNONYMOUS_CODING tou DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
3L	2476418	3L_2476418_SNP [dm3] 3L_2476418_SNP [dm6]	C	T	1.277e^-4	1	SYNONYMOUS_CODING Cyp4d20 UPSTREAM CG16762 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3689699	2L_3689699_MNP [dm3] 2L_3689699_MNP [dm6]	CAA	TGT	1.289e^-4	1	INTRON CG34340
2R	16050128	2R_16050128_SNP [dm3] 2R_20162623_SNP [dm6]	G	A	1.301e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17191397	2L_17191397_SNP [dm3] 2L_17191397_SNP [dm6]	C	T	1.302e^-4	1	INTRON beat-IIIc
2R	10218707	2R_10218707_SNP [dm3] 2R_14331202_SNP [dm6]	G	A	1.316e^-4	1	INTRON Shroom
3R	12327752	3R_12327752_SNP [dm3] 3R_16502030_SNP [dm6]	C	T	1.322e^-4	1	UPSTREAM decay & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1484403	3L_1484403_SNP [dm3] 3L_1484403_SNP [dm6]	G	C	1.326e^-4	1	INTRON stet	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	2734577	2L_2734577_SNP [dm3] 2L_2734577_SNP [dm6]	C	T	1.337e^-4	1	INTRON CG31689
2R	10786143	2R_10786143_SNP [dm3] 2R_14898638_SNP [dm6]	T	A	1.356e^-4	1	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11708590	3L_11708590_SNP [dm3] 3L_11715490_SNP [dm6]	G	A	1.380e^-4	1	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	3378107	2R_3378107_SNP [dm3] 2R_7490602_SNP [dm6]	G	T	1.381e^-4	1	UPSTREAM wech DOWNSTREAM Coop INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5897355	2R_5897355_SNP [dm3] 2R_10009850_SNP [dm6]	A	G	1.381e^-4	1	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3689694	2L_3689694_SNP [dm3] 2L_3689694_SNP [dm6]	T	G	1.382e^-4	1	INTRON CG34340
X	16979735	X_16979735_SNP [dm3] X_17085702_SNP [dm6]	G	A	1.392e^-4	1	SYNONYMOUS_CODING CG8945
2R	12276716	2R_12276716_INS [dm3] 2R_16389211_INS [dm6]	A	AA	1.397e^-4	1	INTRON Sema-2b
2R	5897360	2R_5897360_SNP [dm3] 2R_10009855_SNP [dm6]	A	C	1.405e^-4	1	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4403402	2R_4403402_INS [dm3] 2R_8515897_INS [dm6]	T	TT	1.407e^-4	1	INTRON mtt
2L	7043920	2L_7043920_SNP [dm3] 2L_7043920_SNP [dm6]	C	G	1.408e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	6813167	2L_6813167_SNP [dm3] 2L_6813167_SNP [dm6]	T	A	1.416e^-4	1	DOWNSTREAM CR44081 INTERGENIC
2L	6693849	2L_6693849_SNP [dm3] 2L_6693849_SNP [dm6]	C	T	1.433e^-4	1	INTRON Tsp
2R	10702960	2R_10702960_SNP [dm3] 2R_14815455_SNP [dm6]	A	C	1.439e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	15242360	2R_15242360_SNP [dm3] 2R_19354855_SNP [dm6]	G	T	1.443e^-4	1	INTRON Rgk1
2R	17298632	2R_17298632_SNP [dm3] 2R_21411127_SNP [dm6]	G	A	1.443e^-4	1	INTRON Sdc
3L	21094572	3L_21094572_SNP [dm3] 3L_21101472_SNP [dm6]	C	T	1.448e^-4	1	INTRON ko	regulatory region REDfly_CRMs
2R	12370631	2R_12370631_SNP [dm3] 2R_16483126_SNP [dm6]	G	A	1.458e^-4	1	INTERGENIC
3L	14156348	3L_14156348_SNP [dm3] 3L_14163248_SNP [dm6]	C	A	1.460e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	16067453	3L_16067453_SNP [dm3] 3L_16074353_SNP [dm6]	G	T	1.462e^-4	1	INTRON Mbs	TF binding site BDTNP1_TFBS_twi
2L	19915218	2L_19915218_SNP [dm3] 2L_19915218_SNP [dm6]	A	T	1.464e^-4	1	INTRON sick	TF binding site mE1_TFBS_bab1
3R	16804318	3R_16804318_SNP [dm3] 3R_20978596_SNP [dm6]	T	A	1.468e^-4	1	UTR_5_PRIME Calx INTRON Calx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16050127	2R_16050127_SNP [dm3] 2R_20162622_SNP [dm6]	G	A	1.471e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3392324	2L_3392324_SNP [dm3] 2L_3392324_SNP [dm6]	G	T	1.485e^-4	1	INTERGENIC
2R	10218704	2R_10218704_SNP [dm3] 2R_14331199_SNP [dm6]	C	T	1.487e^-4	1	INTRON Shroom
X	18132907	X_18132907_SNP [dm3] X_18238874_SNP [dm6]	A	G	1.502e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE
3L	12710752	3L_12710752_SNP [dm3] 3L_12717652_SNP [dm6]	G	A	1.512e^-4	1	INTERGENIC
2R	17298634	2R_17298634_SNP [dm3] 2R_21411129_SNP [dm6]	T	C	1.513e^-4	1	INTRON Sdc
2R	18464700	2R_18464700_SNP [dm3] 2R_22577195_SNP [dm6]	C	T	1.515e^-4	1	INTRON dnr1
2R	14706500	2R_14706500_SNP [dm3] 2R_18818995_SNP [dm6]	T	C	1.539e^-4	1	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18110668	3L_18110668_SNP [dm3] 3L_18117568_SNP [dm6]	C	T	1.540e^-4	1	UTR_3_PRIME CG32195 INTRON CG7341
2L	6593875	2L_6593875_SNP [dm3] 2L_6593875_SNP [dm6]	A	T	1.551e^-4	1	INTRON CG11319
2R	10874727	2R_10874727_SNP [dm3] 2R_14987222_SNP [dm6]	C	A	1.562e^-4	1	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13244117	2R_13244117_SNP [dm3] 2R_17356612_SNP [dm6]	C	T	1.579e^-4	1	INTRON mbl
3R	25313116	3R_25313116_SNP [dm3] 3R_29487394_SNP [dm6]	G	C	1.580e^-4	1	NON_SYNONYMOUS_CODING CG2321 DOWNSTREAM Ptp99A
X	16468853	X_16468853_SNP [dm3] X_16574820_SNP [dm6]	A	C	1.585e^-4	1	INTRON CanA-14F	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_sbb
3R	12948734	3R_12948734_SNP [dm3] 3R_17123012_SNP [dm6]	G	T	1.588e^-4	1	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
2L	13087476	2L_13087476_SNP [dm3] 2L_13087476_SNP [dm6]	A	G	1.596e^-4	1	INTERGENIC
2R	3303696	2R_3303696_SNP [dm3] 2R_7416191_SNP [dm6]	T	G	1.598e^-4	1	INTERGENIC
3L	8909679	3L_8909679_SNP [dm3] 3L_8916579_SNP [dm6]	T	C	1.602e^-4	1	DOWNSTREAM CR43970 INTRON Tsp66E
2R	8898205	2R_8898205_SNP [dm3] 2R_13010700_SNP [dm6]	C	A	1.607e^-4	1	INTERGENIC
2R	9044371	2R_9044371_SNP [dm3] 2R_13156866_SNP [dm6]	C	A	1.623e^-4	1	INTRON TppII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1267484	3L_1267484_SNP [dm3] 3L_1267484_SNP [dm6]	A	G	1.634e^-4	1	INTRON CG9134
2R	10549501	2R_10549501_SNP [dm3] 2R_14661996_SNP [dm6]	T	G	1.639e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11003604	3L_11003604_SNP [dm3] 3L_11010504_SNP [dm6]	A	C	1.643e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	11740072	2R_11740072_SNP [dm3] 2R_15852567_SNP [dm6]	C	T	1.643e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10549497	2R_10549497_SNP [dm3] 2R_14661992_SNP [dm6]	T	G	1.649e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2324626	2L_2324626_SNP [dm3] 2L_2324626_SNP [dm6]	A	G	1.661e^-4	1	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_cad
3L	10332782	3L_10332782_DEL [dm3] 3L_10339682_DEL [dm6]	CA	C	1.663e^-4	1	INTERGENIC
2L	17923288	2L_17923288_SNP [dm3] 2L_17923288_SNP [dm6]	T	A	1.665e^-4	1	INTERGENIC
2R	17775943	2R_17775943_SNP [dm3] 2R_21888438_SNP [dm6]	A	T	1.668e^-4	1	INTRON Fili
2L	2348542	2L_2348542_SNP [dm3] 2L_2348542_SNP [dm6]	C	T	1.668e^-4	1	INTRON CG9967 & 1 other
X	21061369	X_21061369_INS [dm3] X_21190342_INS [dm6]	C	CTCGGCA	1.673e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16610347	2L_16610347_SNP [dm3] 2L_16610347_SNP [dm6]	C	T	1.677e^-4	1	DOWNSTREAM CG4631 INTRON CG42389
2R	10786139	2R_10786139_SNP [dm3] 2R_14898634_SNP [dm6]	C	A	1.689e^-4	1	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11314840	2L_11314840_SNP [dm3] 2L_11314840_SNP [dm6]	G	A	1.728e^-4	1	INTERGENIC
3L	3625721	3L_3625721_SNP [dm3] 3L_3625721_SNP [dm6]	C	T	1.732e^-4	1	UPSTREAM dar1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5897455	2R_5897455_SNP [dm3] 2R_10009950_SNP [dm6]	A	T	1.735e^-4	1	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1251871	3L_1251871_SNP [dm3] 3L_1251871_SNP [dm6]	C	T	1.738e^-4	1	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
2R	11739968	2R_11739968_SNP [dm3] 2R_15852463_SNP [dm6]	C	G	1.743e^-4	1	SYNONYMOUS_CODING tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740071	2R_11740071_SNP [dm3] 2R_15852566_SNP [dm6]	A	G	1.743e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11831319	X_11831319_SNP [dm3] X_11937286_SNP [dm6]	A	T	1.755e^-4	1	INTRON cac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	5897587	2R_5897587_DEL [dm3] 2R_10010082_DEL [dm6]	TT	T	1.756e^-4	1	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11661653	2R_11661653_SNP [dm3] 2R_15774148_SNP [dm6]	G	C	1.758e^-4	1	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3L	18012875	3L_18012875_SNP [dm3] 3L_18019775_SNP [dm6]	T	C	1.766e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	16016049	X_16016049_SNP [dm3] X_16122016_SNP [dm6]	A	G	1.772e^-4	1	SYNONYMOUS_CODING disco-r	TF binding site mE1_TFBS_chinmo
X	8834919	X_8834919_SNP [dm3] X_8940886_SNP [dm6]	G	A	1.791e^-4	1	INTRON rdgA
2R	5897358	2R_5897358_SNP [dm3] 2R_10009853_SNP [dm6]	G	T	1.796e^-4	1	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15060790	2R_15060790_DEL [dm3] 2R_19173285_DEL [dm6]	TCCT	T	1.798e^-4	1	INTRON CG10737
3L	17805446	3L_17805446_SNP [dm3] 3L_17812346_SNP [dm6]	G	A	1.802e^-4	1	INTRON cln3
2R	4402044	2R_4402044_SNP [dm3] 2R_8514539_SNP [dm6]	C	T	1.835e^-4	1	INTRON mtt
2R	14698692	2R_14698692_SNP [dm3] 2R_18811187_SNP [dm6]	G	T	1.835e^-4	1	INTRON CG15096
2L	14458135	2L_14458135_SNP [dm3] 2L_14458135_SNP [dm6]	C	A	1.844e^-4	1	DOWNSTREAM CR44730 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	19674053	2R_19674053_SNP [dm3] 2R_23786530_SNP [dm6]	C	T	1.858e^-4	1	INTRON CG9850
2R	10218404	2R_10218404_SNP [dm3] 2R_14330899_SNP [dm6]	A	T	1.862e^-4	1	INTRON Shroom
2L	10630373	2L_10630373_SNP [dm3] 2L_10630373_SNP [dm6]	G	A	1.871e^-4	1	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5897403	2R_5897403_SNP [dm3] 2R_10009898_SNP [dm6]	C	A	1.878e^-4	1	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8909865	3L_8909865_SNP [dm3] 3L_8916765_SNP [dm6]	T	C	1.880e^-4	1	INTRON Tsp66E
3R	7705264	3R_7705264_SNP [dm3] 3R_11879542_SNP [dm6]	T	C	1.890e^-4	1	SYNONYMOUS_CODING sad DOWNSTREAM CG6962	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	12329031	3R_12329031_SNP [dm3] 3R_16503309_SNP [dm6]	C	T	1.892e^-4	1	INTRON CG42342	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	12948767	3R_12948767_DEL [dm3] 3R_17123045_DEL [dm6]	TT	A	1.899e^-4	1	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
3L	17916686	3L_17916686_SNP [dm3] 3L_17923586_SNP [dm6]	C	A	1.900e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10153763	2R_10153763_SNP [dm3] 2R_14266258_SNP [dm6]	A	G	1.911e^-4	1	INTRON CG8547
2R	6064333	2R_6064333_SNP [dm3] 2R_10176828_SNP [dm6]	G	A	1.915e^-4	1	INTRON KCNQ
2L	17088640	2L_17088640_SNP [dm3] 2L_17088640_SNP [dm6]	G	A	1.931e^-4	1	UTR_3_PRIME CG12620
X	15060290	X_15060290_SNP [dm3] X_15166257_SNP [dm6]	C	A	1.933e^-4	1	INTERGENIC
2L	6813255	2L_6813255_INS [dm3] 2L_6813255_INS [dm6]	A	AA	1.933e^-4	1	DOWNSTREAM CR44081 INTERGENIC
2L	6813258	2L_6813258_INS [dm3] 2L_6813258_INS [dm6]	A	ACGTA	1.933e^-4	1	DOWNSTREAM CR44081 INTERGENIC
2L	2656928	2L_2656928_SNP [dm3] 2L_2656928_SNP [dm6]	G	C	1.934e^-4	1	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Prosbeta4R2
2R	10688036	2R_10688036_SNP [dm3] 2R_14800531_SNP [dm6]	A	G	1.945e^-4	1	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	16159933	X_16159933_SNP [dm3] X_16265900_SNP [dm6]	A	C	1.945e^-4	1	INTRON CG12507
2L	4095181	2L_4095181_SNP [dm3] 2L_4095181_SNP [dm6]	A	C	1.950e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_twi
3R	7826940	3R_7826940_SNP [dm3] 3R_12001218_SNP [dm6]	C	T	1.954e^-4	1	SYNONYMOUS_CODING Ect3 INTRON Tk
2R	11740076	2R_11740076_SNP [dm3] 2R_15852571_SNP [dm6]	G	C	1.954e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15559778	3R_15559778_SNP [dm3] 3R_19734056_SNP [dm6]	G	C	1.957e^-4	1	INTRON GluClalpha
2L	2946023	2L_2946023_SNP [dm3] 2L_2946023_SNP [dm6]	G	A	1.964e^-4	1	UPSTREAM lilli INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17180522	2R_17180522_SNP [dm3] 2R_21293017_SNP [dm6]	A	T	1.975e^-4	1	UPSTREAM CG30392 & 1 other INTRON Sgf29	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_sens
X	21061468	X_21061468_SNP [dm3] X_21190441_SNP [dm6]	G	A	1.982e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10735174	2R_10735174_SNP [dm3] 2R_14847669_SNP [dm6]	T	G	1.983e^-4	1	SYNONYMOUS_CODING CG10209 DOWNSTREAM SMC2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	18295590	3L_18295590_SNP [dm3] 3L_18302490_SNP [dm6]	A	T	1.985e^-4	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	3819864	2R_3819864_SNP [dm3] 2R_7932359_SNP [dm6]	A	C	1.989e^-4	1	UTR_5_PRIME rnh1 UPSTREAM drosha	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	7932538	3L_7932538_INS [dm3] 3L_7939438_INS [dm6]	A	ACCTAA	2.004e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	21127836	2R_21127836_INS [dm3] 2R_25240313_INS [dm6]	T	TACC	2.020e^-4	1	INTRON CG9380
3L	1145040	3L_1145040_SNP [dm3] 3L_1145040_SNP [dm6]	C	A	2.025e^-4	1	INTRON bab2
3L	18014302	3L_18014302_SNP [dm3] 3L_18021202_SNP [dm6]	G	A	2.033e^-4	1	INTRON Eip75B	TF binding site mE1_TFBS_Trl
2R	10688949	2R_10688949_SNP [dm3] 2R_14801444_SNP [dm6]	C	A	2.046e^-4	1	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15060338	X_15060338_SNP [dm3] X_15166305_SNP [dm6]	T	G	2.050e^-4	1	INTERGENIC
2L	16359031	2L_16359031_SNP [dm3] 2L_16359031_SNP [dm6]	T	C	2.053e^-4	1	INTERGENIC
3R	15559607	3R_15559607_SNP [dm3] 3R_19733885_SNP [dm6]	A	G	2.054e^-4	1	INTRON GluClalpha
2R	10622250	2R_10622250_SNP [dm3] 2R_14734745_SNP [dm6]	A	T	2.054e^-4	1	INTERGENIC
2L	7270429	2L_7270429_SNP [dm3] 2L_7270429_SNP [dm6]	G	T	2.055e^-4	1	INTRON Wnt4
2R	10704614	2R_10704614_SNP [dm3] 2R_14817109_SNP [dm6]	G	A	2.066e^-4	1	DOWNSTREAM CG10202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12327938	3L_12327938_SNP [dm3] 3L_12334838_SNP [dm6]	C	T	2.066e^-4	1	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
3R	15559831	3R_15559831_SNP [dm3] 3R_19734109_SNP [dm6]	C	T	2.067e^-4	1	INTRON GluClalpha
2L	7270416	2L_7270416_SNP [dm3] 2L_7270416_SNP [dm6]	C	T	2.067e^-4	1	INTRON Wnt4
2R	10294461	2R_10294461_SNP [dm3] 2R_14406956_SNP [dm6]	T	A	2.071e^-4	1	INTERGENIC
2L	19919376	2L_19919376_SNP [dm3] 2L_19919376_SNP [dm6]	A	T	2.090e^-4	1	UPSTREAM CR43828 INTRON sick
2R	6258293	2R_6258293_SNP [dm3] 2R_10370788_SNP [dm6]	T	C	2.095e^-4	1	INTRON CG42732
3L	14972421	3L_14972421_SNP [dm3] 3L_14979321_SNP [dm6]	G	T	2.102e^-4	1	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	2363763	2L_2363763_DEL [dm3] 2L_2363763_DEL [dm6]	AGCA	A	2.104e^-4	1	UPSTREAM Rab5 INTRON Rab5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17915099	3L_17915099_SNP [dm3] 3L_17921999_SNP [dm6]	T	G	2.107e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16848286	X_16848286_DEL [dm3] X_16954253_DEL [dm6]	AA	A	2.124e^-4	1	INTRON RhoGAP15B
3R	22468455	3R_22468455_SNP [dm3] 3R_26642733_SNP [dm6]	G	T	2.132e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	9619832	X_9619832_SNP [dm3] X_9725799_SNP [dm6]	A	T	2.154e^-4	1	INTERGENIC
X	14094941	X_14094941_SNP [dm3] X_14200908_SNP [dm6]	A	T	2.163e^-4	1	UPSTREAM l_1_G0007 DOWNSTREAM yl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	13146924	3L_13146924_SNP [dm3] 3L_13153824_SNP [dm6]	T	C	2.165e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	10631558	2R_10631558_SNP [dm3] 2R_14744053_SNP [dm6]	C	T	2.169e^-4	1	UTR_5_PRIME CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10155835	2R_10155835_SNP [dm3] 2R_14268330_SNP [dm6]	A	C	2.178e^-4	1	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC	TF binding site mE1_TFBS_Trl
3R	10744990	3R_10744990_SNP [dm3] 3R_14919268_SNP [dm6]	G	A	2.189e^-4	1	NON_SYNONYMOUS_CODING Sdr
2L	7270405	2L_7270405_SNP [dm3] 2L_7270405_SNP [dm6]	T	A	2.189e^-4	1	INTRON Wnt4
2R	17546225	2R_17546225_SNP [dm3] 2R_21658720_SNP [dm6]	A	T	2.199e^-4	1	NON_SYNONYMOUS_CODING CG10320 DOWNSTREAM Rae1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12328196	3L_12328196_SNP [dm3] 3L_12335096_SNP [dm6]	C	T	2.201e^-4	1	INTRON CG32105	TF binding site mE1_TFBS_chinmo
2L	6500836	2L_6500836_SNP [dm3] 2L_6500836_SNP [dm6]	C	T	2.211e^-4	1	INTRON CG31637
3R	9766823	3R_9766823_SNP [dm3] 3R_13941101_SNP [dm6]	A	C	2.213e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	18295550	3L_18295550_SNP [dm3] 3L_18302450_SNP [dm6]	T	C	2.252e^-4	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	10787296	2R_10787296_SNP [dm3] 2R_14899791_SNP [dm6]	A	G	2.258e^-4	1	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17183061	2R_17183061_SNP [dm3] 2R_21295556_SNP [dm6]	G	A	2.258e^-4	1	UTR_5_PRIME CG9752 UPSTREAM CG42672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	5119262	X_5119262_SNP [dm3] X_5225229_SNP [dm6]	T	A	2.259e^-4	1	SPLICE_SITE_REGION CG15465 & 1 other INTRON CG15465 & 1 other
2L	8363433	2L_8363433_DEL [dm3] 2L_8363433_DEL [dm6]	CC	C	2.265e^-4	1	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	11457488	2R_11457488_SNP [dm3] 2R_15569983_SNP [dm6]	A	G	2.266e^-4	1	UTR_3_PRIME Cdk5 UPSTREAM Flo1 INTRON CG30466	TF binding site BDTNP1_TFBS_dl
X	8451556	X_8451556_SNP [dm3] X_8557523_SNP [dm6]	C	T	2.268e^-4	1	SYNONYMOUS_CODING IntS4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1844670	3L_1844670_SNP [dm3] 3L_1844670_SNP [dm6]	T	C	2.283e^-4	1	INTERGENIC
2L	16343495	2L_16343495_SNP [dm3] 2L_16343495_SNP [dm6]	G	A	2.285e^-4	1	DOWNSTREAM chif INTRON chif & 1 other
2R	17775947	2R_17775947_SNP [dm3] 2R_21888442_SNP [dm6]	C	A	2.297e^-4	1	INTRON Fili
2R	10155834	2R_10155834_SNP [dm3] 2R_14268329_SNP [dm6]	G	T	2.300e^-4	1	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC	TF binding site mE1_TFBS_Trl
3L	2905500	3L_2905500_SNP [dm3] 3L_2905500_SNP [dm6]	C	G	2.307e^-4	1	INTRON Shab
3L	9602967	3L_9602967_SNP [dm3] 3L_9609867_SNP [dm6]	A	G	2.311e^-4	1	INTRON CG3280
3L	7621036	3L_7621036_SNP [dm3] 3L_7627936_SNP [dm6]	G	A	2.336e^-4	1	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12851328	2L_12851328_SNP [dm3] 2L_12851328_SNP [dm6]	A	G	2.338e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13859758	2R_13859758_SNP [dm3] 2R_17972253_SNP [dm6]	G	A	2.341e^-4	1	INTERGENIC
2R	13094633	2R_13094633_SNP [dm3] 2R_17207128_SNP [dm6]	G	A	2.344e^-4	1	INTERGENIC
2L	11577388	2L_11577388_SNP [dm3] 2L_11577388_SNP [dm6]	A	G	2.348e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10367738	2R_10367738_SNP [dm3] 2R_14480233_SNP [dm6]	C	T	2.351e^-4	1	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
3L	1245186	3L_1245186_SNP [dm3] 3L_1245186_SNP [dm6]	T	G	2.352e^-4	1	SPLICE_SITE_REGION Klp61F DOWNSTREAM CG32318 INTRON Klp61F	TF binding site mE1_TFBS_sens
X	11831204	X_11831204_SNP [dm3] X_11937171_SNP [dm6]	A	G	2.363e^-4	1	INTRON cac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4487402	3L_4487402_SNP [dm3] 3L_4487402_SNP [dm6]	G	T	2.364e^-4	1	NON_SYNONYMOUS_CODING CG13722
2R	18791155	2R_18791155_SNP [dm3] 2R_22903632_SNP [dm6]	T	A	2.366e^-4	1	INTRON nahoda
3L	7108208	3L_7108208_SNP [dm3] 3L_7115108_SNP [dm6]	C	A	2.369e^-4	1	INTRON form3
2R	10218393	2R_10218393_SNP [dm3] 2R_14330888_SNP [dm6]	A	C	2.376e^-4	1	INTRON Shroom
3L	17883822	3L_17883822_SNP [dm3] 3L_17890722_SNP [dm6]	C	T	2.378e^-4	1	SYNONYMOUS_CODING CG7402
2R	15242379	2R_15242379_SNP [dm3] 2R_19354874_SNP [dm6]	G	A	2.380e^-4	1	INTRON Rgk1
2L	14457964	2L_14457964_SNP [dm3] 2L_14457964_SNP [dm6]	T	G	2.381e^-4	1	DOWNSTREAM CR44730 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	17833986	2R_17833986_SNP [dm3] 2R_21946481_SNP [dm6]	A	C	2.394e^-4	1	DOWNSTREAM Fili INTERGENIC
2R	15430383	2R_15430383_DEL [dm3] 2R_19542878_DEL [dm6]	GG	G	2.395e^-4	1	INTRON sm	TF binding site mE1_TFBS_inv
2L	4846623	2L_4846623_SNP [dm3] 2L_4846623_SNP [dm6]	T	A	2.397e^-4	1	UPSTREAM mxt INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15044705	2R_15044705_SNP [dm3] 2R_19157200_SNP [dm6]	T	C	2.402e^-4	1	INTRON ena
3R	22437741	3R_22437741_SNP [dm3] 3R_26612019_SNP [dm6]	A	C	2.445e^-4	1	INTERGENIC
3L	10861899	3L_10861899_SNP [dm3] 3L_10868799_SNP [dm6]	A	C	2.447e^-4	1	INTRON tna
2L	2918575	2L_2918575_SNP [dm3] 2L_2918575_SNP [dm6]	A	T	2.459e^-4	1	INTRON lilli
X	7807284	X_7807284_SNP [dm3] X_7913251_SNP [dm6]	A	T	2.461e^-4	1	INTRON snz
3R	22126466	3R_22126466_SNP [dm3] 3R_26300744_SNP [dm6]	A	G	2.468e^-4	1	INTERGENIC
2R	10912238	2R_10912238_SNP [dm3] 2R_15024733_SNP [dm6]	T	A	2.471e^-4	1	UPSTREAM CR45256 INTRON hbs & 1 other
2R	3820649	2R_3820649_SNP [dm3] 2R_7933144_SNP [dm6]	C	A	2.486e^-4	1	NON_SYNONYMOUS_CODING drosha UPSTREAM rnh1	TF binding site mE1_TFBS_sens
3R	12328841	3R_12328841_SNP [dm3] 3R_16503119_SNP [dm6]	G	C	2.491e^-4	1	UTR_5_PRIME CG42342	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9546300	3L_9546300_SNP [dm3] 3L_9553200_SNP [dm6]	G	C	2.493e^-4	1	UTR_5_PRIME CG42673
3L	18013078	3L_18013078_SNP [dm3] 3L_18019978_SNP [dm6]	T	G	2.507e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11163548	2R_11163548_SNP [dm3] 2R_15276043_SNP [dm6]	T	C	2.510e^-4	1	INTRON Trpm
2R	17519398	2R_17519398_SNP [dm3] 2R_21631893_SNP [dm6]	T	C	2.513e^-4	1	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
X	16981249	X_16981249_SNP [dm3] X_17087216_SNP [dm6]	G	C	2.517e^-4	1	NON_SYNONYMOUS_CODING CG8945
2R	18966041	2R_18966041_SNP [dm3] 2R_23078518_SNP [dm6]	A	G	2.550e^-4	1	SYNONYMOUS_CODING Art7 DOWNSTREAM CG43659	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18298794	3L_18298794_SNP [dm3] 3L_18305694_SNP [dm6]	C	A	2.558e^-4	1	INTERGENIC
3L	2475604	3L_2475604_SNP [dm3] 3L_2475604_SNP [dm6]	A	T	2.568e^-4	1	UTR_5_PRIME CG16762 DOWNSTREAM Cyp4d20 INTRON CG45186
2L	17415441	2L_17415441_SNP [dm3] 2L_17415441_SNP [dm6]	G	A	2.574e^-4	1	UTR_3_PRIME Dif INTRON Dif	TF binding site mE1_TFBS_inv
2L	20625409	2L_20625409_SNP [dm3] 2L_20625409_SNP [dm6]	A	T	2.584e^-4	1	INTRON CR44909
3L	10748823	3L_10748823_SNP [dm3] 3L_10755723_SNP [dm6]	C	T	2.584e^-4	1	INTERGENIC
2R	19157778	2R_19157778_SNP [dm3] 2R_23270255_SNP [dm6]	G	T	2.608e^-4	1	UPSTREAM CG13540 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15576654	2R_15576654_SNP [dm3] 2R_19689149_SNP [dm6]	A	T	2.614e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4487887	3L_4487887_SNP [dm3] 3L_4487887_SNP [dm6]	A	G	2.631e^-4	1	INTRON CG13722
2R	13104650	2R_13104650_SNP [dm3] 2R_17217145_SNP [dm6]	A	C	2.633e^-4	1	INTRON mbl
3L	17883828	3L_17883828_SNP [dm3] 3L_17890728_SNP [dm6]	G	A	2.643e^-4	1	NON_SYNONYMOUS_CODING CG7402
2R	19157783	2R_19157783_SNP [dm3] 2R_23270260_SNP [dm6]	C	T	2.643e^-4	1	UPSTREAM CG13540 DOWNSTREAM ord INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3321244	2L_3321244_SNP [dm3] 2L_3321244_SNP [dm6]	T	G	2.645e^-4	1	INTRON CG8837
3L	453730	3L_453730_SNP [dm3] 3L_453730_SNP [dm6]	A	T	2.649e^-4	1	INTRON klar
2R	18698175	2R_18698175_SNP [dm3] 2R_22810670_SNP [dm6]	A	T	2.652e^-4	1	INTRON stl	TF binding site BDTNP1_TFBS_twi
3R	13455413	3R_13455413_SNP [dm3] 3R_17629691_SNP [dm6]	G	C	2.660e^-4	1	UPSTREAM tRNA:V4:90C DOWNSTREAM CG14325 INTERGENIC
2R	19598850	2R_19598850_SNP [dm3] 2R_23711327_SNP [dm6]	T	A	2.662e^-4	1	INTERGENIC
2L	4231695	2L_4231695_SNP [dm3] 2L_4231695_SNP [dm6]	C	T	2.664e^-4	1	INTERGENIC
2L	2562853	2L_2562853_SNP [dm3] 2L_2562853_SNP [dm6]	A	C	2.674e^-4	1	UTR_3_PRIME Cyp309a1 DOWNSTREAM Cyp309a1
2R	15695982	2R_15695982_SNP [dm3] 2R_19808477_SNP [dm6]	C	A	2.683e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3374042	2R_3374042_SNP [dm3] 2R_7486537_SNP [dm6]	T	C	2.686e^-4	1	UPSTREAM wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	13095940	2R_13095940_SNP [dm3] 2R_17208435_SNP [dm6]	G	A	2.688e^-4	1	INTERGENIC
3R	12346710	3R_12346710_SNP [dm3] 3R_16520988_SNP [dm6]	C	A	2.708e^-4	1	INTRON CG42342	TF binding site mE1_TFBS_cad
3L	6529240	3L_6529240_DEL [dm3] 3L_6536140_DEL [dm6]	ACA	A	2.720e^-4	1	INTRON sfl
2R	10785994	2R_10785994_SNP [dm3] 2R_14898489_SNP [dm6]	G	T	2.724e^-4	1	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	10721455	X_10721455_SNP [dm3] X_10827422_SNP [dm6]	A	C	2.740e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13358773	2L_13358773_SNP [dm3] 2L_13358773_SNP [dm6]	T	A	2.744e^-4	1	INTERGENIC
2R	10787494	2R_10787494_SNP [dm3] 2R_14899989_SNP [dm6]	C	T	2.744e^-4	1	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19171979	2R_19171979_SNP [dm3] 2R_23284456_SNP [dm6]	C	T	2.745e^-4	1	SYNONYMOUS_CODING CG13541 UPSTREAM CG3124
3R	24200084	3R_24200084_SNP [dm3] 3R_28374362_SNP [dm6]	C	G	2.747e^-4	1	INTERGENIC
3L	18295569	3L_18295569_SNP [dm3] 3L_18302469_SNP [dm6]	T	C	2.749e^-4	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	1253952	3L_1253952_SNP [dm3] 3L_1253952_SNP [dm6]	G	T	2.757e^-4	1	UTR_5_PRIME CG9133 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
2R	11948429	2R_11948429_SNP [dm3] 2R_16060924_SNP [dm6]	T	G	2.762e^-4	1	DOWNSTREAM CG8405 INTERGENIC
2R	9049888	2R_9049888_SNP [dm3] 2R_13162383_SNP [dm6]	T	G	2.777e^-4	1	SYNONYMOUS_CODING Nrk DOWNSTREAM CG15870	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12242272	3L_12242272_SNP [dm3] 3L_12249172_SNP [dm6]	T	A	2.778e^-4	1	INTRON app	TF binding site mE1_TFBS_cad
2L	7131572	2L_7131572_DEL [dm3] 2L_7131572_DEL [dm6]	AA	A	2.786e^-4	1	INTRON Pvf3
2L	15968887	2L_15968887_SNP [dm3] 2L_15968887_SNP [dm6]	C	T	2.787e^-4	1	INTERGENIC
3L	7932712	3L_7932712_SNP [dm3] 3L_7939612_SNP [dm6]	C	T	2.788e^-4	1	INTERGENIC
2R	15698662	2R_15698662_SNP [dm3] 2R_19811157_SNP [dm6]	C	T	2.793e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	19948356	3R_19948356_SNP [dm3] 3R_24122634_SNP [dm6]	G	T	2.794e^-4	1	INTRON Rootletin
3L	17882594	3L_17882594_SNP [dm3] 3L_17889494_SNP [dm6]	T	A	2.798e^-4	1	INTRON CG7402
2L	14459025	2L_14459025_SNP [dm3] 2L_14459025_SNP [dm6]	G	A	2.808e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3L	16418125	3L_16418125_SNP [dm3] 3L_16425025_SNP [dm6]	C	A	2.809e^-4	1	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17888408	2L_17888408_SNP [dm3] 2L_17888408_SNP [dm6]	C	T	2.815e^-4	1	INTERGENIC
3L	277065	3L_277065_SNP [dm3] 3L_277065_SNP [dm6]	A	G	2.829e^-4	1	UPSTREAM RhoGEF3 DOWNSTREAM ttm2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13948918	2R_13948918_SNP [dm3] 2R_18061413_SNP [dm6]	T	C	2.829e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23581000	3R_23581000_SNP [dm3] 3R_27755278_SNP [dm6]	G	A	2.845e^-4	1	INTERGENIC
2R	15141355	2R_15141355_SNP [dm3] 2R_19253850_SNP [dm6]	C	T	2.863e^-4	1	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19048195	3L_19048195_SNP [dm3] 3L_19055095_SNP [dm6]	T	G	2.869e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	17775564	2R_17775564_SNP [dm3] 2R_21888059_SNP [dm6]	T	C	2.884e^-4	1	INTRON Fili
X	11548327	X_11548327_SNP [dm3] X_11654294_SNP [dm6]	C	T	2.886e^-4	1	INTRON Ptp10D
3L	18857091	3L_18857091_SNP [dm3] 3L_18863991_SNP [dm6]	G	A	2.890e^-4	1	UPSTREAM CG6865 INTRON CG6865
X	5212856	X_5212856_SNP [dm3] X_5318823_SNP [dm6]	A	T	2.897e^-4	1	UTR_3_PRIME Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo
4	635773	4_635773_SNP [dm3] 4_615147_SNP [dm6]	T	A	2.904e^-4	1	NON_SYNONYMOUS_CODING Eph
X	9875708	X_9875708_SNP [dm3] X_9981675_SNP [dm6]	T	G	2.907e^-4	1	INTERGENIC
3L	14097948	3L_14097948_SNP [dm3] 3L_14104848_SNP [dm6]	T	C	2.909e^-4	1	SYNONYMOUS_CODING Sox21a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5896467	2R_5896467_SNP [dm3] 2R_10008962_SNP [dm6]	G	C	2.913e^-4	1	INTRON Pka-R2
X	18363771	X_18363771_SNP [dm3] X_18469738_SNP [dm6]	C	T	2.928e^-4	1	INTRON CG32547
2R	15518841	2R_15518841_SNP [dm3] 2R_19631336_SNP [dm6]	A	G	2.929e^-4	1	UTR_5_PRIME sm UPSTREAM sm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7932406	3L_7932406_SNP [dm3] 3L_7939306_SNP [dm6]	A	T	2.931e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9264009	3R_9264009_SNP [dm3] 3R_13438287_SNP [dm6]	A	G	2.934e^-4	1	DOWNSTREAM CR42756 INTERGENIC
3R	25306014	3R_25306014_DEL [dm3] 3R_29480292_DEL [dm6]	AA	A	2.950e^-4	1	INTRON Ptp99A
2R	19171362	2R_19171362_SNP [dm3] 2R_23283839_SNP [dm6]	A	C	2.954e^-4	1	SYNONYMOUS_CODING CG3124 UPSTREAM CG13541	TF binding site mE1_TFBS_chinmo
2R	19317981	2R_19317981_SNP [dm3] 2R_23430458_SNP [dm6]	T	A	2.960e^-4	1	INTRON CG9815
3L	10861983	3L_10861983_SNP [dm3] 3L_10868883_SNP [dm6]	C	G	2.966e^-4	1	UPSTREAM tna INTRON tna
3R	16795701	3R_16795701_SNP [dm3] 3R_20969979_SNP [dm6]	T	A	2.984e^-4	1	INTRON Atpalpha
2R	11740078	2R_11740078_SNP [dm3] 2R_15852573_SNP [dm6]	T	G	3.004e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16915174	2L_16915174_SNP [dm3] 2L_16915174_SNP [dm6]	G	A	3.024e^-4	1	SYNONYMOUS_CODING tweek
2R	8717230	2R_8717230_INS [dm3] 2R_12829725_INS [dm6]	A	AGA	3.032e^-4	1	INTERGENIC
2R	915281	2R_915281_SNP [dm3] 2R_5027776_SNP [dm6]	G	A	3.040e^-4	1	INTERGENIC	transposable element FlyBase
2R	10532301	2R_10532301_SNP [dm3] 2R_14644796_SNP [dm6]	T	A	3.045e^-4	1	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9584882	X_9584882_SNP [dm3] X_9690849_SNP [dm6]	C	G	3.046e^-4	1	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9264017	3R_9264017_SNP [dm3] 3R_13438295_SNP [dm6]	G	A	3.068e^-4	1	DOWNSTREAM CR42756 INTERGENIC
2L	16012234	2L_16012234_SNP [dm3] 2L_16012234_SNP [dm6]	C	T	3.082e^-4	1	INTRON beat-Ic
2R	15866572	2R_15866572_SNP [dm3] 2R_19979067_SNP [dm6]	T	A	3.089e^-4	1	UPSTREAM CG8654 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2592477	2L_2592477_SNP [dm3] 2L_2592477_SNP [dm6]	A	C	3.090e^-4	1	NON_SYNONYMOUS_CODING CG15394
2L	4520037	2L_4520037_SNP [dm3] 2L_4520037_SNP [dm6]	G	A	3.093e^-4	1	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9333657	3R_9333657_SNP [dm3] 3R_13507935_SNP [dm6]	G	C	3.096e^-4	1	INTERGENIC
X	10591692	X_10591692_SNP [dm3] X_10697659_SNP [dm6]	A	C	3.110e^-4	1	INTRON X11Lbeta
3L	10484864	3L_10484864_SNP [dm3] 3L_10491764_SNP [dm6]	G	A	3.113e^-4	1	SYNONYMOUS_CODING S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8898213	2R_8898213_SNP [dm3] 2R_13010708_SNP [dm6]	G	A	3.114e^-4	1	INTERGENIC
X	2253174	X_2253174_SNP [dm3] X_2359141_SNP [dm6]	A	G	3.115e^-4	1	INTRON ptr
2R	12012548	2R_12012548_SNP [dm3] 2R_16125043_SNP [dm6]	A	G	3.120e^-4	1	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	3984027	3R_3984027_SNP [dm3] 3R_8158305_SNP [dm6]	T	A	3.130e^-4	1	INTRON grn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	11740097	2R_11740097_DEL [dm3] 2R_15852592_DEL [dm6]	ATTAGAAAGTT...	A	3.138e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740111	2R_11740111_DEL [dm3] 2R_15852606_DEL [dm6]	TG	T	3.138e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10786029	2R_10786029_SNP [dm3] 2R_14898524_SNP [dm6]	C	T	3.146e^-4	1	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	9050044	2R_9050044_SNP [dm3] 2R_13162539_SNP [dm6]	G	T	3.152e^-4	1	SYNONYMOUS_CODING Nrk DOWNSTREAM CG15870	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14456768	2L_14456768_SNP [dm3] 2L_14456768_SNP [dm6]	C	A	3.169e^-4	1	UPSTREAM CR44730 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
3L	885475	3L_885475_SNP [dm3] 3L_885475_SNP [dm6]	T	C	3.176e^-4	1	INTRON CG32479
2R	13859749	2R_13859749_SNP [dm3] 2R_17972244_SNP [dm6]	G	C	3.177e^-4	1	INTERGENIC
X	10765534	X_10765534_SNP [dm3] X_10871501_SNP [dm6]	T	G	3.191e^-4	1	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
3L	18298841	3L_18298841_SNP [dm3] 3L_18305741_SNP [dm6]	A	G	3.200e^-4	1	INTERGENIC
3L	7952792	3L_7952792_SNP [dm3] 3L_7959692_SNP [dm6]	A	C	3.205e^-4	1	INTERGENIC
2L	14472370	2L_14472370_DEL [dm3] 2L_14472370_DEL [dm6]	TT	T	3.205e^-4	1	INTERGENIC
X	9063578	X_9063578_SNP [dm3] X_9169545_SNP [dm6]	C	T	3.217e^-4	1	SYNONYMOUS_CODING mei-P26	TF binding site mE1_TFBS_HSA
2L	3016165	2L_3016165_SNP [dm3] 2L_3016165_SNP [dm6]	C	T	3.222e^-4	1	DOWNSTREAM CG17224 & 1 other INTERGENIC
X	6936960	X_6936960_SNP [dm3] X_7042927_SNP [dm6]	T	C	3.246e^-4	1	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	10775862	2R_10775862_SNP [dm3] 2R_14888357_SNP [dm6]	A	G	3.251e^-4	1	SYNONYMOUS_CODING Cyp6a8
2L	2653921	2L_2653921_SNP [dm3] 2L_2653921_SNP [dm6]	C	T	3.260e^-4	1	UTR_3_PRIME Prosbeta4R1 UPSTREAM Or23a
2R	10666527	2R_10666527_SNP [dm3] 2R_14779022_SNP [dm6]	G	C	3.275e^-4	1	INTRON kn
3R	12327707	3R_12327707_SNP [dm3] 3R_16501985_SNP [dm6]	A	C	3.285e^-4	1	UPSTREAM decay & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7475118	2R_7475118_SNP [dm3] 2R_11587613_SNP [dm6]	G	T	3.300e^-4	1	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	19598853	2R_19598853_SNP [dm3] 2R_23711330_SNP [dm6]	C	T	3.309e^-4	1	INTERGENIC
2L	15603086	2L_15603086_SNP [dm3] 2L_15603086_SNP [dm6]	C	G	3.318e^-4	1	INTERGENIC
X	9585042	X_9585042_DEL [dm3] X_9691009_DEL [dm6]	TTA	T	3.319e^-4	1	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9222535	3L_9222535_SNP [dm3] 3L_9229435_SNP [dm6]	G	A	3.319e^-4	1	INTERGENIC
3L	12327890	3L_12327890_SNP [dm3] 3L_12334790_SNP [dm6]	C	A	3.324e^-4	1	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6416703	2L_6416703_SNP [dm3] 2L_6416703_SNP [dm6]	A	C	3.329e^-4	1	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11831318	X_11831318_SNP [dm3] X_11937285_SNP [dm6]	G	C	3.341e^-4	1	INTRON cac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	12328253	3R_12328253_SNP [dm3] 3R_16502531_SNP [dm6]	C	A	3.345e^-4	1	UPSTREAM CG42342 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20505843	3R_20505843_SNP [dm3] 3R_24680121_SNP [dm6]	A	G	3.356e^-4	1	INTRON slo
2R	14550357	2R_14550357_SNP [dm3] 2R_18662852_SNP [dm6]	G	T	3.358e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14460134	2L_14460134_SNP [dm3] 2L_14460134_SNP [dm6]	T	A	3.360e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18302814	3L_18302814_SNP [dm3] 3L_18309714_SNP [dm6]	A	C	3.365e^-4	1	INTERGENIC
3L	12972663	3L_12972663_SNP [dm3] 3L_12979563_SNP [dm6]	A	G	3.372e^-4	1	INTERGENIC
2R	5897371	2R_5897371_INS [dm3] 2R_10009866_INS [dm6]	A	ACA	3.378e^-4	1	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4831940	2L_4831940_SNP [dm3] 2L_4831940_SNP [dm6]	G	A	3.381e^-4	1	SPLICE_SITE_REGION Ir25a INTRON Ir25a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15595891	2R_15595891_SNP [dm3] 2R_19708386_SNP [dm6]	G	A	3.410e^-4	1	INTERGENIC
2R	15595892	2R_15595892_SNP [dm3] 2R_19708387_SNP [dm6]	A	G	3.410e^-4	1	INTERGENIC
2R	15595906	2R_15595906_SNP [dm3] 2R_19708401_SNP [dm6]	C	G	3.410e^-4	1	INTERGENIC
2R	14706379	2R_14706379_SNP [dm3] 2R_18818874_SNP [dm6]	A	G	3.410e^-4	1	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16981469	X_16981469_SNP [dm3] X_17087436_SNP [dm6]	C	T	3.412e^-4	1	SYNONYMOUS_CODING CG8945
3L	1242653	3L_1242653_SNP [dm3] 3L_1242653_SNP [dm6]	A	G	3.418e^-4	1	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9063641	X_9063641_SNP [dm3] X_9169608_SNP [dm6]	T	C	3.424e^-4	1	SYNONYMOUS_CODING mei-P26	TF binding site mE1_TFBS_HSA
3L	18014179	3L_18014179_SNP [dm3] 3L_18021079_SNP [dm6]	G	T	3.425e^-4	1	INTRON Eip75B	TF binding site mE1_TFBS_Trl
X	10722058	X_10722058_DEL [dm3] X_10828025_DEL [dm6]	CGAA	G	3.425e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9416689	2L_9416689_SNP [dm3] 2L_9416689_SNP [dm6]	G	A	3.431e^-4	1	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3965113	2L_3965113_SNP [dm3] 2L_3965113_SNP [dm6]	G	A	3.432e^-4	1	INTRON fred
X	17098035	X_17098035_SNP [dm3] X_17204002_SNP [dm6]	T	G	3.445e^-4	1	DOWNSTREAM CG5070 INTERGENIC
3L	4484600	3L_4484600_SNP [dm3] 3L_4484600_SNP [dm6]	A	G	3.448e^-4	1	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	17299635	2R_17299635_SNP [dm3] 2R_21412130_SNP [dm6]	C	T	3.451e^-4	1	INTRON Sdc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15595905	2R_15595905_SNP [dm3] 2R_19708400_SNP [dm6]	T	A	3.461e^-4	1	INTERGENIC
2L	2902269	2L_2902269_SNP [dm3] 2L_2902269_SNP [dm6]	C	A	3.461e^-4	1	INTRON lilli
X	11842856	X_11842856_SNP [dm3] X_11948823_SNP [dm6]	G	A	3.476e^-4	1	SYNONYMOUS_CODING cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17268087	2R_17268087_SNP [dm3] 2R_21380582_SNP [dm6]	A	C	3.491e^-4	1	INTERGENIC
2L	19849334	2L_19849334_SNP [dm3] 2L_19849334_SNP [dm6]	T	C	3.494e^-4	1	UPSTREAM sick INTRON sick
2L	10669399	2L_10669399_SNP [dm3] 2L_10669399_SNP [dm6]	A	C	3.495e^-4	1	INTRON CG31871
3R	22459768	3R_22459768_SNP [dm3] 3R_26634046_SNP [dm6]	G	A	3.503e^-4	1	NON_SYNONYMOUS_CODING TwdlH UPSTREAM TwdlR
2R	15159254	2R_15159254_SNP [dm3] 2R_19271749_SNP [dm6]	A	C	3.514e^-4	1	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	6264867	2R_6264867_SNP [dm3] 2R_10377362_SNP [dm6]	T	A	3.519e^-4	1	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b
2L	7967558	2L_7967558_SNP [dm3] 2L_7967558_SNP [dm6]	A	G	3.522e^-4	1	INTRON Snoo
2R	15298420	2R_15298420_SNP [dm3] 2R_19410915_SNP [dm6]	C	A	3.532e^-4	1	SYNONYMOUS_CODING hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	10786028	2R_10786028_SNP [dm3] 2R_14898523_SNP [dm6]	G	A	3.548e^-4	1	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	2216352	X_2216352_SNP [dm3] X_2322319_SNP [dm6]	T	C	3.571e^-4	1	UPSTREAM CR34052 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10765528	X_10765528_SNP [dm3] X_10871495_SNP [dm6]	A	G	3.573e^-4	1	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
2R	17775566	2R_17775566_SNP [dm3] 2R_21888061_SNP [dm6]	C	G	3.585e^-4	1	INTRON Fili
2R	11741984	2R_11741984_SNP [dm3] 2R_15854479_SNP [dm6]	T	A	3.594e^-4	1	UTR_3_PRIME tun DOWNSTREAM tun
X	18229486	X_18229486_INS [dm3] X_18335453_INS [dm6]	T	TGT	3.596e^-4	1	INTRON CG6123
3R	14370132	3R_14370132_SNP [dm3] 3R_18544410_SNP [dm6]	T	A	3.600e^-4	1	INTRON fru
2R	14010797	2R_14010797_SNP [dm3] 2R_18123292_SNP [dm6]	G	C	3.601e^-4	1	INTRON stau	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	5679295	2L_5679295_SNP [dm3] 2L_5679295_SNP [dm6]	T	C	3.601e^-4	1	UTR_3_PRIME CG12511 DOWNSTREAM CG12511
2L	1686774	2L_1686774_INS [dm3] 2L_1686774_INS [dm6]	A	AGTTTAAGTTGA...	3.622e^-4	1	INTRON chinmo
2R	14698626	2R_14698626_SNP [dm3] 2R_18811121_SNP [dm6]	A	G	3.624e^-4	1	INTRON CG15096
2R	17181878	2R_17181878_SNP [dm3] 2R_21294373_SNP [dm6]	G	T	3.631e^-4	1	UTR_3_PRIME RpL29 UPSTREAM Sgf29 DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	20435516	3R_20435516_SNP [dm3] 3R_24609794_SNP [dm6]	C	A	3.639e^-4	1	INTRON mld
2L	3986225	2L_3986225_SNP [dm3] 2L_3986225_SNP [dm6]	C	T	3.687e^-4	1	INTRON fred
2L	6447184	2L_6447184_SNP [dm3] 2L_6447184_SNP [dm6]	A	G	3.701e^-4	1	SYNONYMOUS_CODING CG9527	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13611747	3L_13611747_SNP [dm3] 3L_13618647_SNP [dm6]	G	C	3.701e^-4	1	INTRON bru-3
2R	14603944	2R_14603944_SNP [dm3] 2R_18716439_SNP [dm6]	C	T	3.704e^-4	1	INTERGENIC
X	6898800	X_6898800_SNP [dm3] X_7004767_SNP [dm6]	T	A	3.708e^-4	1	START_GAINED Inx7 UTR_5_PRIME Inx7 DOWNSTREAM Inx2
X	5097610	X_5097610_INS [dm3] X_5203577_INS [dm6]	T	TT	3.713e^-4	1	INTRON CG15465 & 1 other
3L	8582549	3L_8582549_SNP [dm3] 3L_8589449_SNP [dm6]	C	T	3.733e^-4	1	UPSTREAM CG43078 INTRON CG43078
X	10722152	X_10722152_SNP [dm3] X_10828119_SNP [dm6]	T	A	3.733e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	16848290	X_16848290_SNP [dm3] X_16954257_SNP [dm6]	C	T	3.734e^-4	1	INTRON RhoGAP15B
X	15954512	X_15954512_SNP [dm3] X_16060479_SNP [dm6]	A	G	3.734e^-4	1	SYNONYMOUS_CODING Muc14A
3L	17885248	3L_17885248_SNP [dm3] 3L_17892148_SNP [dm6]	T	G	3.738e^-4	1	UTR_3_PRIME Tsp74F DOWNSTREAM CG7402
2R	15680499	2R_15680499_DEL [dm3] 2R_19792994_DEL [dm6]	GTG	AA	3.741e^-4	1	INTERGENIC
2R	15298629	2R_15298629_DEL [dm3] 2R_19411124_DEL [dm6]	TGTTATCCA	T	3.745e^-4	1	INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12682692	2L_12682692_SNP [dm3] 2L_12682692_SNP [dm6]	T	G	3.753e^-4	1	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	16979636	X_16979636_SNP [dm3] X_17085603_SNP [dm6]	C	T	3.758e^-4	1	SYNONYMOUS_CODING CG8945
2L	6813196	2L_6813196_DEL [dm3] 2L_6813196_DEL [dm6]	GTAGTAAAGA	G	3.773e^-4	1	DOWNSTREAM CR44081 INTERGENIC
3L	18298844	3L_18298844_SNP [dm3] 3L_18305744_SNP [dm6]	G	A	3.798e^-4	1	INTERGENIC
2L	7044432	2L_7044432_SNP [dm3] 2L_7044432_SNP [dm6]	T	C	3.812e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1049346	2R_1049346_DEL [dm3] 2R_5161841_DEL [dm6]	AACA	A	3.817e^-4	1	INTERGENIC	transposable element FlyBase
X	16159952	X_16159952_SNP [dm3] X_16265919_SNP [dm6]	T	A	3.822e^-4	1	INTRON CG12507
3R	5992032	3R_5992032_DEL [dm3] 3R_10166310_DEL [dm6]	AA	A	3.827e^-4	1	INTRON Best1
2R	19234837	2R_19234837_SNP [dm3] 2R_23347314_SNP [dm6]	G	A	3.829e^-4	1	NON_SYNONYMOUS_CODING CG9863 UTR_5_PRIME CG3502	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6693248	X_6693248_SNP [dm3] X_6799215_SNP [dm6]	C	A	3.836e^-4	1	INTRON C3G
2L	16449767	2L_16449767_SNP [dm3] 2L_16449767_SNP [dm6]	A	G	3.850e^-4	1	INTRON Idgf2
2R	19169240	2R_19169240_SNP [dm3] 2R_23281717_SNP [dm6]	C	T	3.852e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23302904	3R_23302904_SNP [dm3] 3R_27477182_SNP [dm6]	T	A	3.854e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18605978	3R_18605978_SNP [dm3] 3R_22780256_SNP [dm6]	G	C	3.858e^-4	1	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17312677	2R_17312677_SNP [dm3] 2R_21425172_SNP [dm6]	C	T	3.864e^-4	1	INTRON Sdc
2R	10770906	2R_10770906_SNP [dm3] 2R_14883401_SNP [dm6]	C	T	3.867e^-4	1	NON_SYNONYMOUS_CODING Cyp6a20
2R	15044694	2R_15044694_SNP [dm3] 2R_19157189_SNP [dm6]	A	C	3.871e^-4	1	INTRON ena
2L	2598557	2L_2598557_SNP [dm3] 2L_2598557_SNP [dm6]	T	C	3.879e^-4	1	DOWNSTREAM CR44790 INTERGENIC
2R	15862205	2R_15862205_SNP [dm3] 2R_19974700_SNP [dm6]	G	T	3.895e^-4	1	INTERGENIC
2R	11608228	2R_11608228_SNP [dm3] 2R_15720723_SNP [dm6]	G	T	3.899e^-4	1	INTERGENIC
X	13681445	X_13681445_SNP [dm3] X_13787412_SNP [dm6]	A	G	3.905e^-4	1	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	13497954	2L_13497954_SNP [dm3] 2L_13497954_SNP [dm6]	G	T	3.913e^-4	1	INTRON CG42784
3L	11639744	3L_11639744_SNP [dm3] 3L_11646644_SNP [dm6]	C	T	3.917e^-4	1	SYNONYMOUS_CODING RIOK1 UPSTREAM CG6071
2R	19171048	2R_19171048_SNP [dm3] 2R_23283525_SNP [dm6]	T	G	3.920e^-4	1	NON_SYNONYMOUS_CODING CG3124 UPSTREAM CG13541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26798141	3R_26798141_SNP [dm3] 3R_30972419_SNP [dm6]	A	G	3.924e^-4	1	INTRON 5-HT7
3L	6930184	3L_6930184_SNP [dm3] 3L_6937084_SNP [dm6]	C	G	3.931e^-4	1	EXON CR45414	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25131169	3R_25131169_SNP [dm3] 3R_29305447_SNP [dm6]	C	G	3.941e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9264011	3R_9264011_SNP [dm3] 3R_13438289_SNP [dm6]	T	G	3.946e^-4	1	DOWNSTREAM CR42756 INTERGENIC
2L	8989274	2L_8989274_SNP [dm3] 2L_8989274_SNP [dm6]	G	T	3.962e^-4	1	UTR_5_PRIME rost UPSTREAM rost INTRON rost
2R	10775682	2R_10775682_SNP [dm3] 2R_14888177_SNP [dm6]	G	C	3.963e^-4	1	SYNONYMOUS_CODING Cyp6a8
X	12052975	X_12052975_SNP [dm3] X_12158942_SNP [dm6]	C	A	3.968e^-4	1	INTRON Ten-a
2L	14249979	2L_14249979_SNP [dm3] 2L_14249979_SNP [dm6]	A	T	3.971e^-4	1	INTERGENIC
3L	9799207	3L_9799207_SNP [dm3] 3L_9806107_SNP [dm6]	G	A	3.983e^-4	1	INTRON CG32052	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9491689	3L_9491689_SNP [dm3] 3L_9498589_SNP [dm6]	T	C	4.011e^-4	1	INTRON path
4	862546	4_862546_SNP [dm3] 4_841920_SNP [dm6]	T	A	4.014e^-4	1	INTRON fd102C	transposable element FlyBase
2R	10787290	2R_10787290_SNP [dm3] 2R_14899785_SNP [dm6]	T	C	4.018e^-4	1	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15297212	2R_15297212_SNP [dm3] 2R_19409707_SNP [dm6]	A	G	4.032e^-4	1	SYNONYMOUS_CODING hts
3R	21330014	3R_21330014_SNP [dm3] 3R_25504292_SNP [dm6]	C	T	4.041e^-4	1	UPSTREAM CG5107 EXON CR45651	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17185532	2R_17185532_SNP [dm3] 2R_21298027_SNP [dm6]	A	T	4.054e^-4	1	UTR_5_PRIME CG42672 INTRON CG42672 EXON CR44724
2R	11171317	2R_11171317_SNP [dm3] 2R_15283812_SNP [dm6]	T	C	4.060e^-4	1	INTRON Trpm
3R	13487295	3R_13487295_SNP [dm3] 3R_17661573_SNP [dm6]	T	C	4.064e^-4	1	SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_sens
3L	1245182	3L_1245182_INS [dm3] 3L_1245182_INS [dm6]	T	TGAAAAGGTTTTGCTTCTTT...	4.088e^-4	1	DOWNSTREAM CG32318 INTRON Klp61F	TF binding site mE1_TFBS_sens
X	16848291	X_16848291_SNP [dm3] X_16954258_SNP [dm6]	A	G	4.090e^-4	1	INTRON RhoGAP15B
2R	12129675	2R_12129675_SNP [dm3] 2R_16242170_SNP [dm6]	G	A	4.095e^-4	1	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
2L	11077097	2L_11077097_SNP [dm3] 2L_11077097_SNP [dm6]	T	A	4.098e^-4	1	INTRON AstC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	10630361	2L_10630361_SNP [dm3] 2L_10630361_SNP [dm6]	C	T	4.114e^-4	1	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13450901	3R_13450901_SNP [dm3] 3R_17625179_SNP [dm6]	A	G	4.121e^-4	1	UPSTREAM AttD & 2 others INTERGENIC
2R	9347993	2R_9347993_SNP [dm3] 2R_13460488_SNP [dm6]	C	A	4.138e^-4	1	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12280177	2R_12280177_SNP [dm3] 2R_16392672_SNP [dm6]	A	C	4.141e^-4	1	INTRON Sema-2b
2R	12485864	2R_12485864_SNP [dm3] 2R_16598359_SNP [dm6]	C	T	4.146e^-4	1	UPSTREAM CG5089 INTRON CG8303
3L	12327989	3L_12327989_SNP [dm3] 3L_12334889_SNP [dm6]	T	C	4.154e^-4	1	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
3L	16648332	3L_16648332_SNP [dm3] 3L_16655232_SNP [dm6]	C	G	4.160e^-4	1	INTRON Baldspot
2R	11740125	2R_11740125_SNP [dm3] 2R_15852620_SNP [dm6]	A	G	4.161e^-4	1	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4267544	2L_4267544_SNP [dm3] 2L_4267544_SNP [dm6]	G	A	4.168e^-4	1	INTERGENIC
2R	10622249	2R_10622249_SNP [dm3] 2R_14734744_SNP [dm6]	C	A	4.174e^-4	1	INTERGENIC
3R	12947278	3R_12947278_SNP [dm3] 3R_17121556_SNP [dm6]	T	C	4.174e^-4	1	UPSTREAM CG42779 DOWNSTREAM CG34278 INTRON cher
3L	12832757	3L_12832757_SNP [dm3] 3L_12839657_SNP [dm6]	A	T	4.177e^-4	1	INTRON CG10960
2R	10216252	2R_10216252_SNP [dm3] 2R_14328747_SNP [dm6]	A	G	4.187e^-4	1	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11840221	3L_11840221_SNP [dm3] 3L_11847121_SNP [dm6]	T	C	4.204e^-4	1	DOWNSTREAM CG12521 INTERGENIC
2R	15159428	2R_15159428_SNP [dm3] 2R_19271923_SNP [dm6]	C	T	4.205e^-4	1	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	13206057	X_13206057_SNP [dm3] X_13312024_SNP [dm6]	C	A	4.208e^-4	1	INTRON IP3K2
X	7373606	X_7373606_SNP [dm3] X_7479573_SNP [dm6]	A	G	4.209e^-4	1	INTERGENIC
2L	2589381	2L_2589381_SNP [dm3] 2L_2589381_SNP [dm6]	A	G	4.227e^-4	1	INTERGENIC
3L	12327908	3L_12327908_SNP [dm3] 3L_12334808_SNP [dm6]	C	T	4.236e^-4	1	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
2L	5119486	2L_5119486_INS [dm3] 2L_5119486_INS [dm6]	T	TT	4.238e^-4	1	INTRON Msp300
X	5059546	X_5059546_SNP [dm3] X_5165513_SNP [dm6]	T	A	4.243e^-4	1	INTRON rg & 1 other
2R	8898217	2R_8898217_SNP [dm3] 2R_13010712_SNP [dm6]	A	T	4.252e^-4	1	INTERGENIC
2L	18151136	2L_18151136_SNP [dm3] 2L_18151136_SNP [dm6]	T	C	4.258e^-4	1	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Stat92E
3L	18260993	3L_18260993_DEL [dm3] 3L_18267893_DEL [dm6]	TAAAAATGTGGATTTACCAT...	G	4.273e^-4	1	INTERGENIC
X	17245899	X_17245899_SNP [dm3] X_17351866_SNP [dm6]	C	T	4.282e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	9799208	3L_9799208_SNP [dm3] 3L_9806108_SNP [dm6]	T	A	4.283e^-4	1	INTRON CG32052	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	17100230	2R_17100230_SNP [dm3] 2R_21212725_SNP [dm6]	A	G	4.291e^-4	1	UTR_3_PRIME CG44245 DOWNSTREAM CG4302
2R	14604374	2R_14604374_SNP [dm3] 2R_18716869_SNP [dm6]	T	A	4.302e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3392446	2L_3392446_SNP [dm3] 2L_3392446_SNP [dm6]	A	G	4.309e^-4	1	INTERGENIC
2R	12245315	2R_12245315_SNP [dm3] 2R_16357810_SNP [dm6]	G	A	4.313e^-4	1	DOWNSTREAM CR45322 EXON CR43416
3L	16648347	3L_16648347_SNP [dm3] 3L_16655247_SNP [dm6]	C	G	4.329e^-4	1	INTRON Baldspot
2L	15964421	2L_15964421_SNP [dm3] 2L_15964421_SNP [dm6]	T	C	4.331e^-4	1	INTERGENIC
X	10857944	X_10857944_SNP [dm3] X_10963911_SNP [dm6]	T	C	4.352e^-4	1	UTR_3_PRIME Myo10A DOWNSTREAM C901
X	21061442	X_21061442_SNP [dm3] X_21190415_SNP [dm6]	T	A	4.356e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4648818	3L_4648818_SNP [dm3] 3L_4648818_SNP [dm6]	G	T	4.357e^-4	1	SYNONYMOUS_CODING CG32238 INTRON axo	TF binding site BDTNP1_TFBS_prd
2L	2541886	2L_2541886_SNP [dm3] 2L_2541886_SNP [dm6]	G	A	4.359e^-4	1	INTERGENIC
3R	12948778	3R_12948778_SNP [dm3] 3R_17123056_SNP [dm6]	T	A	4.366e^-4	1	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
2L	2600116	2L_2600116_SNP [dm3] 2L_2600116_SNP [dm6]	C	T	4.373e^-4	1	UPSTREAM CR44790 DOWNSTREAM CR44789 INTERGENIC
2L	15967345	2L_15967345_DEL [dm3] 2L_15967345_DEL [dm6]	CAGCAATTAAA...	C	4.374e^-4	1	INTERGENIC
X	10765513	X_10765513_SNP [dm3] X_10871480_SNP [dm6]	A	T	4.381e^-4	1	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
2L	18582939	2L_18582939_DEL [dm3] 2L_18582939_DEL [dm6]	CTTA	G	4.392e^-4	1	INTRON Pde11	transposable element FlyBase
3L	2168889	3L_2168889_SNP [dm3] 3L_2168889_SNP [dm6]	C	A	4.394e^-4	1	DOWNSTREAM CG5704 INTRON CG15879
2L	13154467	2L_13154467_SNP [dm3] 2L_13154467_SNP [dm6]	G	A	4.403e^-4	1	INTERGENIC
X	7968369	X_7968369_SNP [dm3] X_8074336_SNP [dm6]	C	A	4.413e^-4	1	NON_SYNONYMOUS_CODING Upf2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20483123	X_20483123_INS [dm3] X_20612096_INS [dm6]	C	CC	4.420e^-4	1	INTRON RunxA
2R	8837368	2R_8837368_SNP [dm3] 2R_12949863_SNP [dm6]	C	T	4.429e^-4	1	SYNONYMOUS_CODING CG44251 DOWNSTREAM CG44250	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2902302	2L_2902302_SNP [dm3] 2L_2902302_SNP [dm6]	C	A	4.430e^-4	1	INTRON lilli
X	10765525	X_10765525_INS [dm3] X_10871492_INS [dm6]	T	TAGT	4.431e^-4	1	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
2R	15593947	2R_15593947_SNP [dm3] 2R_19706442_SNP [dm6]	A	T	4.433e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	5212852	X_5212852_SNP [dm3] X_5318819_SNP [dm6]	T	A	4.435e^-4	1	UTR_3_PRIME Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo
3L	4487401	3L_4487401_SNP [dm3] 3L_4487401_SNP [dm6]	G	T	4.439e^-4	1	SYNONYMOUS_CODING CG13722
3R	12969734	3R_12969734_SNP [dm3] 3R_17144012_SNP [dm6]	T	A	4.439e^-4	1	DOWNSTREAM m-cup INTERGENIC
2R	17819219	2R_17819219_SNP [dm3] 2R_21931714_SNP [dm6]	T	A	4.442e^-4	1	INTRON Fili
3R	22453344	3R_22453344_SNP [dm3] 3R_26627622_SNP [dm6]	C	A	4.443e^-4	1	UPSTREAM TwdlO DOWNSTREAM TwdlK INTERGENIC
3L	2476433	3L_2476433_SNP [dm3] 3L_2476433_SNP [dm6]	A	C	4.443e^-4	1	SYNONYMOUS_CODING Cyp4d20 UPSTREAM CG16762 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8692607	3L_8692607_SNP [dm3] 3L_8699507_SNP [dm6]	A	T	4.446e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10188073	2R_10188073_SNP [dm3] 2R_14300568_SNP [dm6]	C	A	4.460e^-4	1	NON_SYNONYMOUS_CODING tej DOWNSTREAM Ih
2R	19598629	2R_19598629_SNP [dm3] 2R_23711106_SNP [dm6]	C	T	4.472e^-4	1	INTERGENIC
2R	8898215	2R_8898215_SNP [dm3] 2R_13010710_SNP [dm6]	C	T	4.496e^-4	1	INTERGENIC
3R	22463062	3R_22463062_SNP [dm3] 3R_26637340_SNP [dm6]	C	T	4.522e^-4	1	SYNONYMOUS_CODING TwdlS
2L	16972112	2L_16972112_SNP [dm3] 2L_16972112_SNP [dm6]	T	C	4.529e^-4	1	UPSTREAM beat-IIIb INTERGENIC
2R	14698646	2R_14698646_SNP [dm3] 2R_18811141_SNP [dm6]	T	A	4.530e^-4	1	INTRON CG15096
3L	18295544	3L_18295544_MNP [dm3] 3L_18302444_MNP [dm6]	GTG	AAT	4.533e^-4	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	10612175	2R_10612175_SNP [dm3] 2R_14724670_SNP [dm6]	A	G	4.549e^-4	1	INTERGENIC
3L	18858786	3L_18858786_SNP [dm3] 3L_18865686_SNP [dm6]	T	A	4.551e^-4	1	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12278454	2R_12278454_SNP [dm3] 2R_16390949_SNP [dm6]	G	C	4.567e^-4	1	INTRON Sema-2b
2L	10630897	2L_10630897_SNP [dm3] 2L_10630897_SNP [dm6]	G	A	4.579e^-4	1	SYNONYMOUS_CODING CG7329
3L	8582565	3L_8582565_INS [dm3] 3L_8589465_INS [dm6]	T	TGCTAGAAAAGATAA...	4.580e^-4	1	UPSTREAM CG43078 INTRON CG43078
3L	10235749	3L_10235749_SNP [dm3] 3L_10242649_SNP [dm6]	C	T	4.583e^-4	1	DOWNSTREAM CR44541 & 1 other INTERGENIC
X	4253653	X_4253653_SNP [dm3] X_4359620_SNP [dm6]	G	C	4.594e^-4	1	SYNONYMOUS_CODING norpA
2R	10786021	2R_10786021_SNP [dm3] 2R_14898516_SNP [dm6]	C	T	4.609e^-4	1	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18948594	2R_18948594_SNP [dm3] 2R_23061071_SNP [dm6]	T	C	4.615e^-4	1	SYNONYMOUS_CODING CG44252 DOWNSTREAM l_2_06496
2L	13497951	2L_13497951_SNP [dm3] 2L_13497951_SNP [dm6]	T	C	4.632e^-4	1	INTRON CG42784
3L	1244995	3L_1244995_SNP [dm3] 3L_1244995_SNP [dm6]	A	G	4.643e^-4	1	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_sens
2R	15842654	2R_15842654_SNP [dm3] 2R_19955149_SNP [dm6]	A	C	4.645e^-4	1	DOWNSTREAM CG44622 INTERGENIC
2R	10935735	2R_10935735_SNP [dm3] 2R_15048230_SNP [dm6]	A	T	4.647e^-4	1	INTERGENIC
3R	12857210	3R_12857210_SNP [dm3] 3R_17031488_SNP [dm6]	C	T	4.648e^-4	1	UPSTREAM CG31268 DOWNSTREAM CG5225 INTERGENIC
3L	4488389	3L_4488389_SNP [dm3] 3L_4488389_SNP [dm6]	G	C	4.654e^-4	1	INTRON CG13722
X	12544760	X_12544760_SNP [dm3] X_12650727_SNP [dm6]	C	A	4.664e^-4	1	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
X	9063482	X_9063482_SNP [dm3] X_9169449_SNP [dm6]	T	C	4.682e^-4	1	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6992134	3L_6992134_SNP [dm3] 3L_6999034_SNP [dm6]	G	A	4.694e^-4	1	INTRON Mp
2L	2560526	2L_2560526_SNP [dm3] 2L_2560526_SNP [dm6]	C	T	4.714e^-4	1	INTERGENIC
2L	2560534	2L_2560534_SNP [dm3] 2L_2560534_SNP [dm6]	A	T	4.714e^-4	1	INTERGENIC
X	9584618	X_9584618_SNP [dm3] X_9690585_SNP [dm6]	C	T	4.740e^-4	1	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	8843831	2L_8843831_SNP [dm3] 2L_8843831_SNP [dm6]	C	G	4.746e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	10709758	2R_10709758_DEL [dm3] 2R_14822253_DEL [dm6]	TC	G	4.747e^-4	1	INTERGENIC
2R	11608247	2R_11608247_SNP [dm3] 2R_15720742_SNP [dm6]	T	A	4.751e^-4	1	INTERGENIC
3R	14604330	3R_14604330_SNP [dm3] 3R_18778608_SNP [dm6]	A	G	4.753e^-4	1	INTRON CG7720
2R	15594072	2R_15594072_SNP [dm3] 2R_19706567_SNP [dm6]	T	C	4.763e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	19045464	3L_19045464_SNP [dm3] 3L_19052364_SNP [dm6]	G	A	4.765e^-4	1	UPSTREAM Acp76A DOWNSTREAM CG43407 EXON CR44675
2R	15298814	2R_15298814_SNP [dm3] 2R_19411309_SNP [dm6]	T	C	4.783e^-4	1	START_GAINED hts UTR_5_PRIME hts INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2263668	3L_2263668_SNP [dm3] 3L_2263668_SNP [dm6]	T	A	4.788e^-4	1	NON_SYNONYMOUS_CODING ecd DOWNSTREAM CG13807	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11850193	2R_11850193_SNP [dm3] 2R_15962688_SNP [dm6]	G	A	4.809e^-4	1	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	12316520	2R_12316520_SNP [dm3] 2R_16429015_SNP [dm6]	C	G	4.834e^-4	1	INTRON Sema-2b	TF binding site BDTNP1_TFBS_twi
2L	17054282	2L_17054282_SNP [dm3] 2L_17054282_SNP [dm6]	A	T	4.845e^-4	1	INTERGENIC
2L	16283457	2L_16283457_DEL [dm3] 2L_16283457_DEL [dm6]	GG	G	4.847e^-4	1	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2L	17152665	2L_17152665_SNP [dm3] 2L_17152665_SNP [dm6]	T	G	4.848e^-4	1	INTRON beat-IIIa & 1 other
X	6476880	X_6476880_SNP [dm3] X_6582847_SNP [dm6]	G	A	4.859e^-4	1	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14977444	3R_14977444_SNP [dm3] 3R_19151722_SNP [dm6]	C	T	4.869e^-4	1	INTRON CG5835
3R	13487331	3R_13487331_SNP [dm3] 3R_17661609_SNP [dm6]	A	G	4.869e^-4	1	SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_sens
2R	10585509	2R_10585509_SNP [dm3] 2R_14698004_SNP [dm6]	G	T	4.870e^-4	1	INTRON mspo
X	20434560	X_20434560_INS [dm3] X_20563533_INS [dm6]	C	CTTGC	4.871e^-4	1	INTRON RunxB
3R	12855693	3R_12855693_SNP [dm3] 3R_17029971_SNP [dm6]	A	G	4.880e^-4	1	SYNONYMOUS_CODING CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13681379	X_13681379_SNP [dm3] X_13787346_SNP [dm6]	G	A	4.901e^-4	1	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	9689391	2R_9689391_SNP [dm3] 2R_13801886_SNP [dm6]	T	C	4.908e^-4	1	INTRON Cpr50Cb
2R	17775733	2R_17775733_SNP [dm3] 2R_21888228_SNP [dm6]	C	T	4.913e^-4	1	INTRON Fili
3L	1388093	3L_1388093_SNP [dm3] 3L_1388093_SNP [dm6]	C	T	4.921e^-4	1	DOWNSTREAM ru INTRON Ptp61F
X	9585081	X_9585081_SNP [dm3] X_9691048_SNP [dm6]	T	A	4.922e^-4	1	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7705450	3R_7705450_SNP [dm3] 3R_11879728_SNP [dm6]	T	A	4.926e^-4	1	UTR_3_PRIME sad & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	10648688	3L_10648688_SNP [dm3] 3L_10655588_SNP [dm6]	C	T	4.947e^-4	1	INTRON CG32066
3L	1388367	3L_1388367_SNP [dm3] 3L_1388367_SNP [dm6]	A	G	4.948e^-4	1	DOWNSTREAM ru INTRON Ptp61F
2R	15095190	2R_15095190_SNP [dm3] 2R_19207685_SNP [dm6]	T	G	4.950e^-4	1	INTRON hppy
X	19705150	X_19705150_SNP [dm3] X_19811117_SNP [dm6]	A	G	4.979e^-4	1	INTERGENIC
2R	14707000	2R_14707000_SNP [dm3] 2R_18819495_SNP [dm6]	A	G	4.985e^-4	1	UTR_5_PRIME Phb2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10808597	2R_10808597_SNP [dm3] 2R_14921092_SNP [dm6]	C	T	4.986e^-4	1	INTRON CG10249
X	5212891	X_5212891_SNP [dm3] X_5318858_SNP [dm6]	C	A	5.014e^-4	1	UTR_3_PRIME Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo
3R	14977410	3R_14977410_DEL [dm3] 3R_19151688_DEL [dm6]	CAG	T	5.017e^-4	1	INTRON CG5835
X	16980311	X_16980311_SNP [dm3] X_17086278_SNP [dm6]	T	C	5.021e^-4	1	SYNONYMOUS_CODING CG8945
2R	10808586	2R_10808586_SNP [dm3] 2R_14921081_SNP [dm6]	T	A	5.025e^-4	1	INTRON CG10249
X	15970388	X_15970388_SNP [dm3] X_16076355_SNP [dm6]	T	G	5.035e^-4	1	UTR_3_PRIME Tob	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	2081486	2L_2081486_SNP [dm3] 2L_2081486_SNP [dm6]	G	A	5.040e^-4	1	UPSTREAM CR44808 DOWNSTREAM CG12674 INTRON dpr3
2L	16011428	2L_16011428_SNP [dm3] 2L_16011428_SNP [dm6]	G	A	5.045e^-4	1	INTRON beat-Ic
2L	2734464	2L_2734464_SNP [dm3] 2L_2734464_SNP [dm6]	T	C	5.046e^-4	1	INTRON CG31689
2L	11576166	2L_11576166_SNP [dm3] 2L_11576166_SNP [dm6]	T	G	5.046e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17924068	2L_17924068_SNP [dm3] 2L_17924068_SNP [dm6]	A	C	5.056e^-4	1	INTERGENIC
2R	17819367	2R_17819367_SNP [dm3] 2R_21931862_SNP [dm6]	G	A	5.058e^-4	1	INTRON Fili
2R	8898186	2R_8898186_SNP [dm3] 2R_13010681_SNP [dm6]	C	A	5.066e^-4	1	INTERGENIC
2L	3986222	2L_3986222_SNP [dm3] 2L_3986222_SNP [dm6]	A	T	5.067e^-4	1	INTRON fred
2R	17009470	2R_17009470_SNP [dm3] 2R_21121965_SNP [dm6]	C	T	5.071e^-4	1	INTRON ktub	TF binding site mE1_TFBS_cad
2L	7264465	2L_7264465_SNP [dm3] 2L_7264465_SNP [dm6]	G	T	5.076e^-4	1	INTRON Wnt4	TF binding site mE1_TFBS_HSA
2L	15964126	2L_15964126_SNP [dm3] 2L_15964126_SNP [dm6]	G	C	5.093e^-4	1	INTERGENIC
3L	18295561	3L_18295561_SNP [dm3] 3L_18302461_SNP [dm6]	T	G	5.098e^-4	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	10875369	2R_10875369_SNP [dm3] 2R_14987864_SNP [dm6]	G	C	5.099e^-4	1	UTR_3_PRIME CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_twi
X	15954586	X_15954586_SNP [dm3] X_16060553_SNP [dm6]	A	C	5.113e^-4	1	INTRON Muc14A
X	10817043	X_10817043_SNP [dm3] X_10923010_SNP [dm6]	A	G	5.117e^-4	1	UTR_3_PRIME CG43901 UPSTREAM v	TF binding site mE1_TFBS_HSA
X	10499540	X_10499540_SNP [dm3] X_10605507_SNP [dm6]	C	G	5.122e^-4	1	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10421194	2L_10421194_SNP [dm3] 2L_10421194_SNP [dm6]	T	C	5.129e^-4	1	SYNONYMOUS_CODING pie DOWNSTREAM RfC3
2L	10421206	2L_10421206_SNP [dm3] 2L_10421206_SNP [dm6]	T	A	5.129e^-4	1	SYNONYMOUS_CODING pie DOWNSTREAM RfC3
2L	15427501	2L_15427501_SNP [dm3] 2L_15427501_SNP [dm6]	G	C	5.139e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
3R	7761808	3R_7761808_SNP [dm3] 3R_11936086_SNP [dm6]	A	T	5.158e^-4	1	INTRON Cad87A
2R	17183066	2R_17183066_SNP [dm3] 2R_21295561_SNP [dm6]	G	A	5.160e^-4	1	START_GAINED CG9752 UTR_5_PRIME CG9752 UPSTREAM CG42672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10155065	2R_10155065_SNP [dm3] 2R_14267560_SNP [dm6]	T	C	5.174e^-4	1	UPSTREAM CG8547 INTRON CG8547
2R	10171323	2R_10171323_SNP [dm3] 2R_14283818_SNP [dm6]	A	G	5.178e^-4	1	INTRON Ih
2L	17043220	2L_17043220_SNP [dm3] 2L_17043220_SNP [dm6]	T	G	5.189e^-4	1	UPSTREAM CR43802 INTERGENIC
X	9739048	X_9739048_SNP [dm3] X_9845015_SNP [dm6]	G	C	5.197e^-4	1	INTRON CG32698
3R	7719953	3R_7719953_SNP [dm3] 3R_11894231_SNP [dm6]	A	G	5.197e^-4	1	UTR_3_PRIME Cad87A UPSTREAM CG6971
3L	2725129	3L_2725129_SNP [dm3] 3L_2725129_SNP [dm6]	G	A	5.198e^-4	1	INTRON Mrtf
2L	17253778	2L_17253778_SNP [dm3] 2L_17253778_SNP [dm6]	T	G	5.203e^-4	1	INTRON beat-IIIc
X	21062308	X_21062308_SNP [dm3] X_21191281_SNP [dm6]	G	T	5.212e^-4	1	INTERGENIC	transposable element FlyBase
2R	18273791	2R_18273791_INS [dm3] 2R_22386286_INS [dm6]	A	AAACGTA	5.220e^-4	1	INTRON CG13506
2R	11850139	2R_11850139_SNP [dm3] 2R_15962634_SNP [dm6]	G	A	5.220e^-4	1	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
3R	7705493	3R_7705493_SNP [dm3] 3R_11879771_SNP [dm6]	A	C	5.230e^-4	1	UTR_3_PRIME CG6962 DOWNSTREAM sad	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	7824885	3R_7824885_SNP [dm3] 3R_11999163_SNP [dm6]	T	G	5.237e^-4	1	UPSTREAM Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12327889	3R_12327889_SNP [dm3] 3R_16502167_SNP [dm6]	C	A	5.237e^-4	1	UPSTREAM CG42342 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4487336	3L_4487336_SNP [dm3] 3L_4487336_SNP [dm6]	A	G	5.237e^-4	1	NON_SYNONYMOUS_CODING CG13722
X	18653432	X_18653432_SNP [dm3] X_18759399_SNP [dm6]	T	A	5.249e^-4	1	INTERGENIC
2R	17819140	2R_17819140_SNP [dm3] 2R_21931635_SNP [dm6]	T	C	5.254e^-4	1	INTRON Fili
3L	8707259	3L_8707259_SNP [dm3] 3L_8714159_SNP [dm6]	G	C	5.256e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6200348	2L_6200348_SNP [dm3] 2L_6200348_SNP [dm6]	C	T	5.267e^-4	1	INTRON CG34380	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	7298516	3L_7298516_SNP [dm3] 3L_7305416_SNP [dm6]	T	C	5.272e^-4	1	INTRON unc-13-4A
3L	12972660	3L_12972660_SNP [dm3] 3L_12979560_SNP [dm6]	T	A	5.275e^-4	1	INTERGENIC
3R	7706084	3R_7706084_SNP [dm3] 3R_11880362_SNP [dm6]	G	A	5.302e^-4	1	SYNONYMOUS_CODING CG6962 DOWNSTREAM sad	TF binding site mE1_TFBS_cad
3L	18274507	3L_18274507_SNP [dm3] 3L_18281407_SNP [dm6]	C	A	5.307e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	17775930	2R_17775930_SNP [dm3] 2R_21888425_SNP [dm6]	G	C	5.308e^-4	1	INTRON Fili
X	18350375	X_18350375_SNP [dm3] X_18456342_SNP [dm6]	T	A	5.315e^-4	1	INTRON CG32547	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	4487881	3L_4487881_SNP [dm3] 3L_4487881_SNP [dm6]	A	C	5.320e^-4	1	INTRON CG13722
2L	3195787	2L_3195787_SNP [dm3] 2L_3195787_SNP [dm6]	A	G	5.345e^-4	1	INTRON CG34393
X	20419387	X_20419387_DEL [dm3] X_20548360_DEL [dm6]	TT	T	5.360e^-4	1	INTRON RunxB
X	4594085	X_4594085_SNP [dm3] X_4700052_SNP [dm6]	A	T	5.365e^-4	1	UTR_3_PRIME ctp DOWNSTREAM ctp	TF binding site BDTNP1_TFBS_dl
2L	9420086	2L_9420086_SNP [dm3] 2L_9420086_SNP [dm6]	T	A	5.370e^-4	1	INTRON Mco1
2R	10786031	2R_10786031_SNP [dm3] 2R_14898526_SNP [dm6]	A	G	5.373e^-4	1	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	12055574	X_12055574_SNP [dm3] X_12161541_SNP [dm6]	G	T	5.389e^-4	1	INTRON Ten-a
X	17250853	X_17250853_SNP [dm3] X_17356820_SNP [dm6]	G	T	5.394e^-4	1	INTERGENIC
2R	10370597	2R_10370597_SNP [dm3] 2R_14483092_SNP [dm6]	C	A	5.404e^-4	1	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1239138	3L_1239138_SNP [dm3] 3L_1239138_SNP [dm6]	G	A	5.407e^-4	1	UPSTREAM CG9192 INTRON CG9194
2L	2653952	2L_2653952_SNP [dm3] 2L_2653952_SNP [dm6]	T	C	5.414e^-4	1	UPSTREAM Or23a DOWNSTREAM Prosbeta4R1 INTERGENIC
2R	5624257	2R_5624257_SNP [dm3] 2R_9736752_SNP [dm6]	C	G	5.415e^-4	1	INTRON sqa
3L	8436068	3L_8436068_MNP [dm3] 3L_8442968_MNP [dm6]	CTG	TAT	5.417e^-4	1	UPSTREAM Unr DOWNSTREAM CG6983 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18298889	3L_18298889_INS [dm3] 3L_18305789_INS [dm6]	A	AGCGGTAA	5.441e^-4	1	INTERGENIC
2R	15868003	2R_15868003_SNP [dm3] 2R_19980498_SNP [dm6]	T	A	5.450e^-4	1	UPSTREAM CG8654 INTRON CG8654
2R	8431893	2R_8431893_SNP [dm3] 2R_12544388_SNP [dm6]	C	A	5.452e^-4	1	INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15560081	3R_15560081_SNP [dm3] 3R_19734359_SNP [dm6]	A	C	5.461e^-4	1	INTRON GluClalpha
2R	16278464	2R_16278464_SNP [dm3] 2R_20390959_SNP [dm6]	C	A	5.463e^-4	1	INTERGENIC
3R	15559707	3R_15559707_SNP [dm3] 3R_19733985_SNP [dm6]	T	G	5.464e^-4	1	INTRON GluClalpha
3R	14604317	3R_14604317_SNP [dm3] 3R_18778595_SNP [dm6]	G	C	5.467e^-4	1	INTRON CG7720
3L	18264351	3L_18264351_SNP [dm3] 3L_18271251_SNP [dm6]	C	T	5.473e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	11576220	2L_11576220_SNP [dm3] 2L_11576220_SNP [dm6]	G	T	5.474e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7705148	3R_7705148_SNP [dm3] 3R_11879426_SNP [dm6]	A	T	5.481e^-4	1	NON_SYNONYMOUS_CODING sad DOWNSTREAM CG6962	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	20169690	2R_20169690_SNP [dm3] 2R_24282167_SNP [dm6]	C	G	5.481e^-4	1	INTRON nvy	TF binding site mE1_TFBS_chinmo
X	8451562	X_8451562_SNP [dm3] X_8557529_SNP [dm6]	T	C	5.486e^-4	1	SYNONYMOUS_CODING IntS4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3235030	2R_3235030_SNP [dm3] 2R_7347525_SNP [dm6]	T	C	5.494e^-4	1	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2L	17345866	2L_17345866_SNP [dm3] 2L_17345866_SNP [dm6]	A	G	5.501e^-4	1	INTERGENIC
X	11831239	X_11831239_SNP [dm3] X_11937206_SNP [dm6]	G	A	5.510e^-4	1	INTRON cac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	8818589	3L_8818589_SNP [dm3] 3L_8825489_SNP [dm6]	G	C	5.514e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	5262041	2L_5262041_SNP [dm3] 2L_5262041_SNP [dm6]	G	C	5.519e^-4	1	INTRON tkv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18153308	2L_18153308_SNP [dm3] 2L_18153308_SNP [dm6]	T	A	5.528e^-4	1	UTR_5_PRIME CG17681 UPSTREAM Socs36E	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15967833	2L_15967833_SNP [dm3] 2L_15967833_SNP [dm6]	G	A	5.530e^-4	1	INTERGENIC
X	4594047	X_4594047_SNP [dm3] X_4700014_SNP [dm6]	A	G	5.531e^-4	1	UTR_3_PRIME ctp DOWNSTREAM ctp
2L	12849921	2L_12849921_SNP [dm3] 2L_12849921_SNP [dm6]	C	T	5.532e^-4	1	INTERGENIC
2R	10788315	2R_10788315_SNP [dm3] 2R_14900810_SNP [dm6]	G	A	5.548e^-4	1	NON_SYNONYMOUS_CODING Cyp317a1 DOWNSTREAM CG10249	TF binding site mE1_TFBS_sens
3R	27016801	3R_27016801_SNP [dm3] 3R_31191079_SNP [dm6]	G	A	5.549e^-4	1	INTRON mesh
3L	18298800	3L_18298800_SNP [dm3] 3L_18305700_SNP [dm6]	G	A	5.552e^-4	1	INTERGENIC
2R	7476394	2R_7476394_INS [dm3] 2R_11588889_INS [dm6]	C	CACC	5.556e^-4	1	CODON_INSERTION tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19171302	2R_19171302_SNP [dm3] 2R_23283779_SNP [dm6]	G	T	5.573e^-4	1	SYNONYMOUS_CODING CG3124 UPSTREAM CG13541	TF binding site mE1_TFBS_chinmo
2L	15931089	2L_15931089_SNP [dm3] 2L_15931089_SNP [dm6]	C	A	5.579e^-4	1	INTRON beat-Ib
3R	9169758	3R_9169758_SNP [dm3] 3R_13344036_SNP [dm6]	G	A	5.588e^-4	1	SYNONYMOUS_CODING PK2-R1
X	17137616	X_17137616_SNP [dm3] X_17243583_SNP [dm6]	C	G	5.594e^-4	1	NON_SYNONYMOUS_CODING CG8915 INTRON f	TF binding site mE1_TFBS_sens
3L	9518142	3L_9518142_SNP [dm3] 3L_9525042_SNP [dm6]	A	G	5.596e^-4	1	INTRON CG33700
2R	15963356	2R_15963356_SNP [dm3] 2R_20075851_SNP [dm6]	T	C	5.598e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24781632	3R_24781632_SNP [dm3] 3R_28955910_SNP [dm6]	A	G	5.615e^-4	1	INTRON CG14521
2R	10367742	2R_10367742_INS [dm3] 2R_14480237_INS [dm6]	T	TTACTCGT	5.621e^-4	1	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2L	16716448	2L_16716448_SNP [dm3] 2L_16716448_SNP [dm6]	C	T	5.628e^-4	1	UPSTREAM CG31808 INTRON Cyt-c-d	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	3613094	3L_3613094_SNP [dm3] 3L_3613094_SNP [dm6]	T	G	5.643e^-4	1	NON_SYNONYMOUS_CODING CG10359
3R	12328124	3R_12328124_SNP [dm3] 3R_16502402_SNP [dm6]	A	T	5.644e^-4	1	UPSTREAM CG42342 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7272055	2L_7272055_SNP [dm3] 2L_7272055_SNP [dm6]	G	T	5.661e^-4	1	INTRON Wnt4
2R	13101368	2R_13101368_SNP [dm3] 2R_17213863_SNP [dm6]	A	T	5.688e^-4	1	INTERGENIC
2L	16002337	2L_16002337_SNP [dm3] 2L_16002337_SNP [dm6]	C	T	5.689e^-4	1	DOWNSTREAM CG34167 INTRON beat-Ic EXON CR43825	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7580095	X_7580095_SNP [dm3] X_7686062_SNP [dm6]	G	A	5.696e^-4	1	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18251842	3L_18251842_SNP [dm3] 3L_18258742_SNP [dm6]	G	C	5.696e^-4	1	INTERGENIC
3L	15498099	3L_15498099_SNP [dm3] 3L_15504999_SNP [dm6]	A	G	5.705e^-4	1	UPSTREAM CG7857 DOWNSTREAM CG7841 INTERGENIC
2L	13116619	2L_13116619_SNP [dm3] 2L_13116619_SNP [dm6]	G	T	5.707e^-4	1	INTERGENIC
3R	7706066	3R_7706066_SNP [dm3] 3R_11880344_SNP [dm6]	C	T	5.722e^-4	1	NON_SYNONYMOUS_CODING CG6962 DOWNSTREAM sad	TF binding site mE1_TFBS_cad
3L	4485607	3L_4485607_SNP [dm3] 3L_4485607_SNP [dm6]	T	G	5.724e^-4	1	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15341158	3R_15341158_SNP [dm3] 3R_19515436_SNP [dm6]	A	G	5.726e^-4	1	INTRON Dys
3L	17882595	3L_17882595_SNP [dm3] 3L_17889495_SNP [dm6]	C	T	5.726e^-4	1	INTRON CG7402
2L	2363759	2L_2363759_SNP [dm3] 2L_2363759_SNP [dm6]	T	A	5.728e^-4	1	UPSTREAM Rab5 INTRON Rab5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15559748	3R_15559748_DEL [dm3] 3R_19734026_DEL [dm6]	GTTGAATTTCAAAGCATTCT...	G	5.732e^-4	1	INTRON GluClalpha
2L	3211134	2L_3211134_SNP [dm3] 2L_3211134_SNP [dm6]	C	T	5.740e^-4	1	EXON CR45336
3L	18295643	3L_18295643_SNP [dm3] 3L_18302543_SNP [dm6]	A	C	5.742e^-4	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	5892432	2R_5892432_DEL [dm3] 2R_10004927_DEL [dm6]	TGTGTATGT	AA	5.752e^-4	1	INTRON Pka-R2
3L	8584184	3L_8584184_SNP [dm3] 3L_8591084_SNP [dm6]	C	T	5.779e^-4	1	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10761746	2R_10761746_SNP [dm3] 2R_14874241_SNP [dm6]	C	A	5.794e^-4	1	NON_SYNONYMOUS_CODING Cyp6a17 DOWNSTREAM Cyp6a22
2R	17479091	2R_17479091_SNP [dm3] 2R_21591586_SNP [dm6]	T	C	5.811e^-4	1	DOWNSTREAM CG33225 INTERGENIC
X	11315495	X_11315495_INS [dm3] X_11421462_INS [dm6]	A	AGAACAGATAT...	5.818e^-4	1	INTERGENIC
X	6331536	X_6331536_SNP [dm3] X_6437503_SNP [dm6]	A	G	5.823e^-4	1	INTRON CG42340
X	16907273	X_16907273_SNP [dm3] X_17013240_SNP [dm6]	C	A	5.835e^-4	1	INTRON CG45002
3L	17021466	3L_17021466_SNP [dm3] 3L_17028366_SNP [dm6]	T	C	5.839e^-4	1	SYNONYMOUS_CODING CG7730	TF binding site mE1_TFBS_chinmo
2R	10208077	2R_10208077_SNP [dm3] 2R_14320572_SNP [dm6]	A	G	5.842e^-4	1	INTRON Shroom	TF binding site mE1_TFBS_cad
3L	10235659	3L_10235659_SNP [dm3] 3L_10242559_SNP [dm6]	A	G	5.848e^-4	1	DOWNSTREAM CR44541 & 1 other INTERGENIC
3L	13262572	3L_13262572_SNP [dm3] 3L_13269472_SNP [dm6]	C	T	5.850e^-4	1	INTRON caps
X	3568751	X_3568751_DEL [dm3] X_3674718_DEL [dm6]	ATGTA	A	5.854e^-4	1	INTRON Mnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26556915	3R_26556915_DEL [dm3] 3R_30731193_DEL [dm6]	TGATCACAAT	T	5.860e^-4	1	UPSTREAM CG11313 INTERGENIC	TF binding site mE1_TFBS_cad
2L	6767834	2L_6767834_SNP [dm3] 2L_6767834_SNP [dm6]	C	G	5.863e^-4	1	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
X	10832811	X_10832811_SNP [dm3] X_10938778_SNP [dm6]	A	C	5.887e^-4	1	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10833107	X_10833107_SNP [dm3] X_10939074_SNP [dm6]	T	A	5.887e^-4	1	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10833484	X_10833484_DEL [dm3] X_10939451_DEL [dm6]	TTAGAAAAACATGGCATGAA...	GTAAAATT	5.887e^-4	1	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17118895	2R_17118895_SNP [dm3] 2R_21231390_SNP [dm6]	C	A	5.893e^-4	1	INTRON ASPP
X	13681470	X_13681470_SNP [dm3] X_13787437_SNP [dm6]	G	T	5.897e^-4	1	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	3227765	2L_3227765_INS [dm3] 2L_3227765_INS [dm6]	A	AGCA	5.902e^-4	1	INTERGENIC
2R	5841213	2R_5841213_SNP [dm3] 2R_9953708_SNP [dm6]	G	A	5.911e^-4	1	INTRON Mef2
2R	15864235	2R_15864235_SNP [dm3] 2R_19976730_SNP [dm6]	G	T	5.911e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13095737	2R_13095737_SNP [dm3] 2R_17208232_SNP [dm6]	A	G	5.919e^-4	1	INTERGENIC
2L	3689375	2L_3689375_SNP [dm3] 2L_3689375_SNP [dm6]	G	A	5.920e^-4	1	INTRON CG34340
2L	9420072	2L_9420072_DEL [dm3] 2L_9420072_DEL [dm6]	ATA	A	5.923e^-4	1	INTRON Mco1
2L	9160708	2L_9160708_SNP [dm3] 2L_9160708_SNP [dm6]	T	G	5.931e^-4	1	INTRON CG32982
3L	6992191	3L_6992191_SNP [dm3] 3L_6999091_SNP [dm6]	A	G	5.959e^-4	1	INTRON Mp
X	12059708	X_12059708_SNP [dm3] X_12165675_SNP [dm6]	A	G	5.960e^-4	1	INTRON Ten-a
2R	10761763	2R_10761763_SNP [dm3] 2R_14874258_SNP [dm6]	C	T	5.972e^-4	1	SYNONYMOUS_CODING Cyp6a17 DOWNSTREAM Cyp6a22
2R	10734820	2R_10734820_SNP [dm3] 2R_14847315_SNP [dm6]	T	C	5.973e^-4	1	SYNONYMOUS_CODING CG10209	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2425087	2L_2425087_SNP [dm3] 2L_2425087_SNP [dm6]	G	A	5.978e^-4	1	DOWNSTREAM CG9886 & 1 other INTERGENIC
2R	20499873	2R_20499873_SNP [dm3] 2R_24612350_SNP [dm6]	A	G	5.980e^-4	1	NON_SYNONYMOUS_CODING CG3608 UPSTREAM CG4741 INTRON CG4741	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18953753	2L_18953753_SNP [dm3] 2L_18953753_SNP [dm6]	G	T	5.989e^-4	1	UTR_5_PRIME CG10621 UPSTREAM CR44741 INTRON CG10621	TF binding site mE1_TFBS_cad
2R	11256015	2R_11256015_SNP [dm3] 2R_15368510_SNP [dm6]	C	T	5.993e^-4	1	SYNONYMOUS_CODING Pms2 DOWNSTREAM unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1244632	3L_1244632_SNP [dm3] 3L_1244632_SNP [dm6]	G	A	6.003e^-4	1	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18133047	X_18133047_SNP [dm3] X_18239014_SNP [dm6]	G	C	6.010e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1
X	5860482	X_5860482_DEL [dm3] X_5966449_DEL [dm6]	TTT	T	6.011e^-4	1	UTR_5_PRIME Grip UPSTREAM Grip INTRON Grip	TF binding site BDTNP1_TFBS_dl
3L	822671	3L_822671_SNP [dm3] 3L_822671_SNP [dm6]	G	A	6.020e^-4	1	INTERGENIC
2L	2363782	2L_2363782_SNP [dm3] 2L_2363782_SNP [dm6]	A	G	6.027e^-4	1	UPSTREAM Rab5 INTRON Rab5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16920753	2L_16920753_SNP [dm3] 2L_16920753_SNP [dm6]	T	A	6.047e^-4	1	INTERGENIC
X	7579047	X_7579047_DEL [dm3] X_7685014_DEL [dm6]	TC	T	6.065e^-4	1	UTR_3_PRIME CHES-1-like
2L	14458102	2L_14458102_SNP [dm3] 2L_14458102_SNP [dm6]	C	T	6.065e^-4	1	DOWNSTREAM CR44730 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	823602	3L_823602_SNP [dm3] 3L_823602_SNP [dm6]	G	T	6.067e^-4	1	INTERGENIC
X	20482732	X_20482732_SNP [dm3] X_20611705_SNP [dm6]	T	A	6.070e^-4	1	INTRON RunxA
2L	10702467	2L_10702467_SNP [dm3] 2L_10702467_SNP [dm6]	G	A	6.072e^-4	1	SYNONYMOUS_CODING Lip2 UPSTREAM Lip1
2R	17118892	2R_17118892_SNP [dm3] 2R_21231387_SNP [dm6]	A	T	6.073e^-4	1	INTRON ASPP
2R	16991029	2R_16991029_SNP [dm3] 2R_21103524_SNP [dm6]	C	A	6.074e^-4	1	INTRON ktub	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2R	10797256	2R_10797256_SNP [dm3] 2R_14909751_SNP [dm6]	A	G	6.087e^-4	1	INTRON CG10249
3R	22463642	3R_22463642_INS [dm3] 3R_26637920_INS [dm6]	T	TC	6.087e^-4	1	DOWNSTREAM TwdlS INTERGENIC
2R	15141419	2R_15141419_SNP [dm3] 2R_19253914_SNP [dm6]	A	C	6.098e^-4	1	UPSTREAM CG33453 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	3743109	3L_3743109_SNP [dm3] 3L_3743109_SNP [dm6]	T	C	6.106e^-4	1	UTR_5_PRIME CG32264 INTRON CG32264
2L	6200376	2L_6200376_SNP [dm3] 2L_6200376_SNP [dm6]	G	A	6.106e^-4	1	INTRON CG34380	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	19599201	2R_19599201_SNP [dm3] 2R_23711678_SNP [dm6]	A	T	6.109e^-4	1	INTERGENIC
X	15954532	X_15954532_SNP [dm3] X_16060499_SNP [dm6]	T	C	6.111e^-4	1	NON_SYNONYMOUS_CODING Muc14A
X	12059668	X_12059668_SNP [dm3] X_12165635_SNP [dm6]	G	T	6.119e^-4	1	INTRON Ten-a
X	9585103	X_9585103_SNP [dm3] X_9691070_SNP [dm6]	A	G	6.146e^-4	1	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15299330	2L_15299330_SNP [dm3] 2L_15299330_SNP [dm6]	C	A	6.148e^-4	1	UTR_3_PRIME CG15262
2R	11852285	2R_11852285_SNP [dm3] 2R_15964780_SNP [dm6]	T	C	6.151e^-4	1	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17882575	3L_17882575_SNP [dm3] 3L_17889475_SNP [dm6]	T	C	6.153e^-4	1	INTRON CG7402
3L	9753305	3L_9753305_SNP [dm3] 3L_9760205_SNP [dm6]	T	G	6.166e^-4	1	UTR_5_PRIME CG42268 UPSTREAM CR45407	TF binding site mE1_TFBS_inv
2R	13099517	2R_13099517_SNP [dm3] 2R_17212012_SNP [dm6]	C	T	6.172e^-4	1	INTERGENIC
2L	2363758	2L_2363758_SNP [dm3] 2L_2363758_SNP [dm6]	T	C	6.172e^-4	1	UPSTREAM Rab5 INTRON Rab5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20140658	3R_20140658_DEL [dm3] 3R_24314936_DEL [dm6]	TT	T	6.185e^-4	1	UTR_3_PRIME Nab2 DOWNSTREAM crb
2R	19943498	2R_19943498_SNP [dm3] 2R_24055975_SNP [dm6]	C	A	6.194e^-4	1	NON_SYNONYMOUS_CODING CG13563 INTRON ppk29	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8631536	2R_8631536_DEL [dm3] 2R_12744031_DEL [dm6]	TGCGTAAGTTTAGTTTCGT...	T	6.200e^-4	1	INTRON CG42663	TF binding site mE1_TFBS_Trl
X	15265296	X_15265296_SNP [dm3] X_15371263_SNP [dm6]	C	T	6.201e^-4	1	INTRON acj6
2L	2355935	2L_2355935_DEL [dm3] 2L_2355935_DEL [dm6]	ATGAAGA	A	6.216e^-4	1	INTRON CG9967 & 1 other
2R	18068519	2R_18068519_SNP [dm3] 2R_22181014_SNP [dm6]	C	T	6.218e^-4	1	INTRON CG11170 & 1 other
X	616267	X_616267_DEL [dm3] X_722234_DEL [dm6]	ACC	T	6.218e^-4	1	INTRON sdk
X	7315514	X_7315514_SNP [dm3] X_7421481_SNP [dm6]	T	C	6.224e^-4	1	NON_SYNONYMOUS_CODING CG9657
3L	1537719	3L_1537719_SNP [dm3] 3L_1537719_SNP [dm6]	A	C	6.233e^-4	1	SYNONYMOUS_CODING CG7852 UPSTREAM CG12091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6378553	3L_6378553_SNP [dm3] 3L_6385453_SNP [dm6]	C	T	6.239e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5298411	2L_5298411_SNP [dm3] 2L_5298411_SNP [dm6]	C	T	6.241e^-4	1	UPSTREAM CR45730 INTRON vri
2L	20249948	2L_20249948_SNP [dm3] 2L_20249948_SNP [dm6]	T	C	6.252e^-4	1	UPSTREAM CR40172 INTERGENIC
3L	4484701	3L_4484701_SNP [dm3] 3L_4484701_SNP [dm6]	G	A	6.254e^-4	1	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	11630857	3L_11630857_SNP [dm3] 3L_11637757_SNP [dm6]	C	T	6.257e^-4	1	INTRON CG32091
2R	14494371	2R_14494371_SNP [dm3] 2R_18606866_SNP [dm6]	G	A	6.263e^-4	1	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	4724768	2L_4724768_SNP [dm3] 2L_4724768_SNP [dm6]	A	G	6.264e^-4	1	INTERGENIC
X	19379734	X_19379734_SNP [dm3] X_19485701_SNP [dm6]	T	A	6.269e^-4	1	UPSTREAM CR43260 DOWNSTREAM pcm INTERGENIC
X	6930635	X_6930635_SNP [dm3] X_7036602_SNP [dm6]	T	G	6.272e^-4	1	INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11256060	2R_11256060_SNP [dm3] 2R_15368555_SNP [dm6]	A	G	6.279e^-4	1	SYNONYMOUS_CODING Pms2 DOWNSTREAM unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12257978	3L_12257978_SNP [dm3] 3L_12264878_SNP [dm6]	A	T	6.287e^-4	1	UTR_5_PRIME app	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16980408	X_16980408_SNP [dm3] X_17086375_SNP [dm6]	A	T	6.287e^-4	1	NON_SYNONYMOUS_CODING CG8945
2R	5941438	2R_5941438_INS [dm3] 2R_10053933_INS [dm6]	A	ATGCG	6.289e^-4	1	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
3L	14660407	3L_14660407_SNP [dm3] 3L_14667307_SNP [dm6]	A	G	6.296e^-4	1	SYNONYMOUS_CODING dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17021351	3L_17021351_SNP [dm3] 3L_17028251_SNP [dm6]	C	G	6.302e^-4	1	SYNONYMOUS_CODING CG7730	TF binding site mE1_TFBS_chinmo
3L	7841943	3L_7841943_SNP [dm3] 3L_7848843_SNP [dm6]	A	G	6.328e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
2R	13858400	2R_13858400_SNP [dm3] 2R_17970895_SNP [dm6]	T	A	6.333e^-4	1	INTERGENIC
3R	23302912	3R_23302912_SNP [dm3] 3R_27477190_SNP [dm6]	A	C	6.338e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3007705	2L_3007705_SNP [dm3] 2L_3007705_SNP [dm6]	C	T	6.338e^-4	1	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18829046	2R_18829046_INS [dm3] 2R_22941523_INS [dm6]	T	TATGT	6.345e^-4	1	UPSTREAM CG42694 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	16952804	2L_16952804_DEL [dm3] 2L_16952804_DEL [dm6]	TTTGCTTGCATAT...	T	6.365e^-4	1	INTERGENIC
X	9739047	X_9739047_SNP [dm3] X_9845014_SNP [dm6]	C	A	6.371e^-4	1	INTRON CG32698
3L	7952796	3L_7952796_DEL [dm3] 3L_7959696_DEL [dm6]	CG	T	6.374e^-4	1	INTERGENIC
2R	13095963	2R_13095963_SNP [dm3] 2R_17208458_SNP [dm6]	T	G	6.381e^-4	1	INTERGENIC
2R	7474789	2R_7474789_SNP [dm3] 2R_11587284_SNP [dm6]	G	A	6.395e^-4	1	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	5451485	2L_5451485_SNP [dm3] 2L_5451485_SNP [dm6]	T	A	6.432e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	7044436	2L_7044436_SNP [dm3] 2L_7044436_SNP [dm6]	C	A	6.437e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9264100	3R_9264100_SNP [dm3] 3R_13438378_SNP [dm6]	G	C	6.441e^-4	1	DOWNSTREAM CR42756 INTERGENIC
3L	12174639	3L_12174639_SNP [dm3] 3L_12181539_SNP [dm6]	G	A	6.464e^-4	1	INTRON CAH2
X	21062249	X_21062249_SNP [dm3] X_21191222_SNP [dm6]	C	T	6.474e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2491441	2L_2491441_SNP [dm3] 2L_2491441_SNP [dm6]	T	C	6.479e^-4	1	SPLICE_SITE_REGION Slh SYNONYMOUS_CODING Slh	enhancer FlyBase TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2554786	2R_2554786_SNP [dm3] 2R_6667281_SNP [dm6]	C	T	6.479e^-4	1	SYNONYMOUS_CODING Adf1 UPSTREAM CG15908	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20825567	2L_20825567_SNP [dm3] 2L_20825567_SNP [dm6]	T	C	6.484e^-4	1	UTR_5_PRIME CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3784827	3L_3784827_DEL [dm3] 3L_3784827_DEL [dm6]	AT	A	6.486e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17342654	3L_17342654_SNP [dm3] 3L_17349554_SNP [dm6]	A	G	6.487e^-4	1	UTR_5_PRIME Mip	TF binding site BDTNP1_TFBS_dl
3L	9537917	3L_9537917_SNP [dm3] 3L_9544817_SNP [dm6]	A	G	6.515e^-4	1	UPSTREAM Ir67a INTERGENIC
2R	14221996	2R_14221996_SNP [dm3] 2R_18334491_SNP [dm6]	A	G	6.518e^-4	1	INTRON sbb	TF binding site mE1_TFBS_HSA
X	10765530	X_10765530_SNP [dm3] X_10871497_SNP [dm6]	T	A	6.523e^-4	1	DOWNSTREAM CG2157 & 1 other INTRON CG1637	TF binding site mE1_TFBS_sens
X	13681481	X_13681481_SNP [dm3] X_13787448_SNP [dm6]	T	G	6.524e^-4	1	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	5119057	2L_5119057_SNP [dm3] 2L_5119057_SNP [dm6]	C	G	6.539e^-4	1	INTRON Msp300
2R	17338402	2R_17338402_SNP [dm3] 2R_21450897_SNP [dm6]	A	G	6.542e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10700594	2R_10700594_SNP [dm3] 2R_14813089_SNP [dm6]	A	G	6.547e^-4	1	INTERGENIC
X	12497621	X_12497621_SNP [dm3] X_12603588_SNP [dm6]	T	C	6.548e^-4	1	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11642984	3L_11642984_SNP [dm3] 3L_11649884_SNP [dm6]	C	G	6.560e^-4	1	UTR_3_PRIME CG7339 DOWNSTREAM CG32085 & 1 other
2R	10152110	2R_10152110_SNP [dm3] 2R_14264605_SNP [dm6]	T	C	6.564e^-4	1	INTRON CG8547	TF binding site mE1_TFBS_cad
3L	18858768	3L_18858768_SNP [dm3] 3L_18865668_SNP [dm6]	A	G	6.569e^-4	1	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14496899	2R_14496899_SNP [dm3] 2R_18609394_SNP [dm6]	C	G	6.574e^-4	1	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9753534	3L_9753534_SNP [dm3] 3L_9760434_SNP [dm6]	C	G	6.582e^-4	1	UPSTREAM CR45407 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17118897	2R_17118897_SNP [dm3] 2R_21231392_SNP [dm6]	A	T	6.588e^-4	1	INTRON ASPP
X	10414445	X_10414445_SNP [dm3] X_10520412_SNP [dm6]	G	A	6.592e^-4	1	INTRON spri
2L	9029500	2L_9029500_SNP [dm3] 2L_9029500_SNP [dm6]	G	A	6.595e^-4	1	INTRON CG9582 & 1 other
X	11315388	X_11315388_INS [dm3] X_11421355_INS [dm6]	A	AA	6.602e^-4	1	INTERGENIC
2L	7877827	2L_7877827_SNP [dm3] 2L_7877827_SNP [dm6]	C	T	6.603e^-4	1	INTRON spz3
3R	20586970	3R_20586970_SNP [dm3] 3R_24761248_SNP [dm6]	C	T	6.604e^-4	1	UTR_3_PRIME AstA DOWNSTREAM asp	TF binding site mE1_TFBS_cad
X	4975460	X_4975460_SNP [dm3] X_5081427_SNP [dm6]	T	C	6.610e^-4	1	INTRON CG32767	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	9264138	3R_9264138_SNP [dm3] 3R_13438416_SNP [dm6]	T	C	6.621e^-4	1	DOWNSTREAM CR42756 INTERGENIC
2R	17809331	2R_17809331_SNP [dm3] 2R_21921826_SNP [dm6]	G	A	6.648e^-4	1	INTRON Fili	TF binding site mE1_TFBS_inv
3R	10750164	3R_10750164_SNP [dm3] 3R_14924442_SNP [dm6]	C	A	6.660e^-4	1	UPSTREAM CR45598 INTERGENIC
X	19379698	X_19379698_SNP [dm3] X_19485665_SNP [dm6]	A	T	6.661e^-4	1	UPSTREAM CR43260 DOWNSTREAM pcm INTERGENIC
2R	8837464	2R_8837464_SNP [dm3] 2R_12949959_SNP [dm6]	G	A	6.667e^-4	1	SYNONYMOUS_CODING CG44251 DOWNSTREAM CG44250	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18067911	2R_18067911_SNP [dm3] 2R_22180406_SNP [dm6]	G	A	6.677e^-4	1	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	4443508	2L_4443508_SNP [dm3] 2L_4443508_SNP [dm6]	G	C	6.680e^-4	1	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	1236278	2L_1236278_INS [dm3] 2L_1236278_INS [dm6]	C	CCAAGC	6.682e^-4	1	INTERGENIC
3L	8582596	3L_8582596_SNP [dm3] 3L_8589496_SNP [dm6]	T	C	6.693e^-4	1	UPSTREAM CG43078 INTRON CG43078
X	15060066	X_15060066_SNP [dm3] X_15166033_SNP [dm6]	T	G	6.700e^-4	1	INTERGENIC
2L	3442920	2L_3442920_SNP [dm3] 2L_3442920_SNP [dm6]	T	A	6.702e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	7319419	X_7319419_DEL [dm3] X_7425386_DEL [dm6]	TG	T	6.707e^-4	1	UTR_3_PRIME CG32726 UPSTREAM CG15036
2L	2600115	2L_2600115_SNP [dm3] 2L_2600115_SNP [dm6]	G	A	6.714e^-4	1	UPSTREAM CR44790 DOWNSTREAM CR44789 INTERGENIC
2R	10412407	2R_10412407_SNP [dm3] 2R_14524902_SNP [dm6]	A	G	6.723e^-4	1	INTERGENIC
3L	12346841	3L_12346841_SNP [dm3] 3L_12353741_SNP [dm6]	G	A	6.740e^-4	1	INTERGENIC
3L	1388352	3L_1388352_SNP [dm3] 3L_1388352_SNP [dm6]	A	C	6.743e^-4	1	DOWNSTREAM ru INTRON Ptp61F
X	18485285	X_18485285_INS [dm3] X_18591252_INS [dm6]	A	ACA	6.756e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10595588	2R_10595588_SNP [dm3] 2R_14708083_SNP [dm6]	C	T	6.765e^-4	1	INTRON mspo
2R	5893005	2R_5893005_SNP [dm3] 2R_10005500_SNP [dm6]	C	T	6.780e^-4	1	INTRON Pka-R2	TF binding site mE1_TFBS_Trl
2R	14296191	2R_14296191_SNP [dm3] 2R_18408686_SNP [dm6]	T	G	6.782e^-4	1	UTR_3_PRIME GstE8 UPSTREAM GstE9 DOWNSTREAM GstE7 & 1 other
2L	2902542	2L_2902542_SNP [dm3] 2L_2902542_SNP [dm6]	G	A	6.785e^-4	1	INTRON lilli	TF binding site mE1_TFBS_chinmo
2L	14249722	2L_14249722_SNP [dm3] 2L_14249722_SNP [dm6]	T	A	6.788e^-4	1	INTERGENIC
3L	9935103	3L_9935103_SNP [dm3] 3L_9942003_SNP [dm6]	C	T	6.789e^-4	1	INTRON CG34356
2L	16832346	2L_16832346_SNP [dm3] 2L_16832346_SNP [dm6]	A	G	6.796e^-4	1	SYNONYMOUS_CODING CG13282 DOWNSTREAM CG31739
2R	15725872	2R_15725872_INS [dm3] 2R_19838367_INS [dm6]	A	ATA	6.799e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13095391	2R_13095391_SNP [dm3] 2R_17207886_SNP [dm6]	T	C	6.807e^-4	1	INTERGENIC
3R	10742213	3R_10742213_SNP [dm3] 3R_14916491_SNP [dm6]	G	A	6.824e^-4	1	INTERGENIC
2R	10875859	2R_10875859_SNP [dm3] 2R_14988354_SNP [dm6]	A	G	6.831e^-4	1	SYNONYMOUS_CODING CG7639 INTRON pcs
2L	16957734	2L_16957734_SNP [dm3] 2L_16957734_SNP [dm6]	A	G	6.848e^-4	1	INTERGENIC
2L	16957736	2L_16957736_SNP [dm3] 2L_16957736_SNP [dm6]	A	C	6.848e^-4	1	INTERGENIC
2L	18153506	2L_18153506_SNP [dm3] 2L_18153506_SNP [dm6]	C	T	6.855e^-4	1	SYNONYMOUS_CODING CG17681
3L	15051925	3L_15051925_SNP [dm3] 3L_15058825_SNP [dm6]	G	A	6.855e^-4	1	INTRON Sytbeta
2R	13095860	2R_13095860_SNP [dm3] 2R_17208355_SNP [dm6]	T	A	6.856e^-4	1	INTERGENIC
2L	8999339	2L_8999339_SNP [dm3] 2L_8999339_SNP [dm6]	T	C	6.857e^-4	1	SYNONYMOUS_CODING Try29F DOWNSTREAM CG18661	TF binding site mE1_TFBS_cad
2R	10589341	2R_10589341_SNP [dm3] 2R_14701836_SNP [dm6]	G	A	6.860e^-4	1	INTRON mspo
3L	2725294	3L_2725294_SNP [dm3] 3L_2725294_SNP [dm6]	G	A	6.864e^-4	1	INTRON Mrtf
2R	9269136	2R_9269136_SNP [dm3] 2R_13381631_SNP [dm6]	T	C	6.866e^-4	1	INTERGENIC
X	20433505	X_20433505_SNP [dm3] X_20562478_SNP [dm6]	T	C	6.872e^-4	1	INTRON RunxB
2L	20622720	2L_20622720_SNP [dm3] 2L_20622720_SNP [dm6]	G	A	6.903e^-4	1	INTRON CR44909
2R	10673497	2R_10673497_SNP [dm3] 2R_14785992_SNP [dm6]	T	G	6.921e^-4	1	INTRON kn
X	12172618	X_12172618_SNP [dm3] X_12278585_SNP [dm6]	G	A	6.934e^-4	1	INTRON Ten-a
2L	5722412	2L_5722412_SNP [dm3] 2L_5722412_SNP [dm6]	T	G	6.934e^-4	1	NON_SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14354775	2R_14354775_SNP [dm3] 2R_18467270_SNP [dm6]	A	T	6.936e^-4	1	INTRON CG30116	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6620039	2L_6620039_SNP [dm3] 2L_6620039_SNP [dm6]	G	A	6.943e^-4	1	DOWNSTREAM CR44913 INTRON CG11320
2R	19171301	2R_19171301_SNP [dm3] 2R_23283778_SNP [dm6]	G	A	6.944e^-4	1	SYNONYMOUS_CODING CG3124 UPSTREAM CG13541	TF binding site mE1_TFBS_chinmo
X	10280662	X_10280662_SNP [dm3] X_10386629_SNP [dm6]	C	A	6.954e^-4	1	UPSTREAM Psf3 INTRON flw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13017224	3L_13017224_SNP [dm3] 3L_13024124_SNP [dm6]	T	A	6.974e^-4	1	UPSTREAM snoRNA:Me28S-A774a DOWNSTREAM snoRNA:Me28S-A774b & 1 other INTRON RpS12
2R	15233497	2R_15233497_INS [dm3] 2R_19345992_INS [dm6]	G	GAATG	6.982e^-4	1	DOWNSTREAM CG9975 INTRON Rgk1
2R	10725522	2R_10725522_SNP [dm3] 2R_14838017_SNP [dm6]	G	T	6.985e^-4	1	INTERGENIC
2R	15297921	2R_15297921_SNP [dm3] 2R_19410416_SNP [dm6]	C	A	7.012e^-4	1	SYNONYMOUS_CODING hts	TF binding site BDTNP1_TFBS_dl
2L	19919634	2L_19919634_SNP [dm3] 2L_19919634_SNP [dm6]	T	C	7.014e^-4	1	UPSTREAM CR43828 INTRON sick
2R	8898193	2R_8898193_SNP [dm3] 2R_13010688_SNP [dm6]	A	T	7.015e^-4	1	INTERGENIC
3R	20621725	3R_20621725_SNP [dm3] 3R_24796003_SNP [dm6]	A	C	7.025e^-4	1	INTRON Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19649084	2R_19649084_SNP [dm3] 2R_23761561_SNP [dm6]	G	C	7.034e^-4	1	INTRON CG9850
3R	13484423	3R_13484423_SNP [dm3] 3R_17658701_SNP [dm6]	G	A	7.040e^-4	1	UPSTREAM tRNA:CR31575 INTRON CG14322
3L	1239170	3L_1239170_SNP [dm3] 3L_1239170_SNP [dm6]	T	A	7.042e^-4	1	UPSTREAM CG9192 INTRON CG9194
2R	7476381	2R_7476381_SNP [dm3] 2R_11588876_SNP [dm6]	C	G	7.048e^-4	1	NON_SYNONYMOUS_CODING tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26808495	3R_26808495_SNP [dm3] 3R_30982773_SNP [dm6]	G	C	7.050e^-4	1	INTRON 5-HT7
2L	11078161	2L_11078161_SNP [dm3] 2L_11078161_SNP [dm6]	T	A	7.051e^-4	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
X	2882046	X_2882046_SNP [dm3] X_2988013_SNP [dm6]	A	G	7.058e^-4	1	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10622258	2R_10622258_SNP [dm3] 2R_14734753_SNP [dm6]	T	C	7.086e^-4	1	INTERGENIC
3R	13467568	3R_13467568_DEL [dm3] 3R_17641846_DEL [dm6]	AA	A	7.092e^-4	1	INTRON CG43175
2L	5119379	2L_5119379_SNP [dm3] 2L_5119379_SNP [dm6]	A	C	7.095e^-4	1	INTRON Msp300
2L	11314860	2L_11314860_SNP [dm3] 2L_11314860_SNP [dm6]	G	A	7.111e^-4	1	INTERGENIC
2R	15056893	2R_15056893_SNP [dm3] 2R_19169388_SNP [dm6]	T	C	7.116e^-4	1	UPSTREAM CG10737 INTRON CG10737
2R	14801258	2R_14801258_SNP [dm3] 2R_18913753_SNP [dm6]	C	A	7.125e^-4	1	INTRON sano
X	6936946	X_6936946_SNP [dm3] X_7042913_SNP [dm6]	C	T	7.127e^-4	1	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	9263030	3R_9263030_SNP [dm3] 3R_13437308_SNP [dm6]	C	G	7.131e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11081151	2L_11081151_SNP [dm3] 2L_11081151_SNP [dm6]	T	C	7.140e^-4	1	INTRON AstC

By genomic position
Variant impact
Gene name

Delta_Death.at.48h Experience 5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results