DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.156e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1685 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	453468	3L_453468_SNP [dm3] 3L_453468_SNP [dm6]	T	C	1.576e^-6	1	SYNONYMOUS_CODING klar UTR_5_PRIME klar INTRON klar
2R	10588859	2R_10588859_SNP [dm3] 2R_14701354_SNP [dm6]	C	T	2.510e^-6	1	INTRON mspo
X	16086178	X_16086178_SNP [dm3] X_16192145_SNP [dm6]	T	C	2.919e^-6	1	UPSTREAM mir-985 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15996210	X_15996210_SNP [dm3] X_16102177_SNP [dm6]	C	T	4.298e^-6	1	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17798976	2L_17798976_SNP [dm3] 2L_17798976_SNP [dm6]	A	T	6.341e^-6	1	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5503672	3L_5503672_SNP [dm3] 3L_5510572_SNP [dm6]	G	T	6.880e^-6	1	INTRON CG34342
3L	8466935	3L_8466935_SNP [dm3] 3L_8473835_SNP [dm6]	C	G	6.928e^-6	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9557704	2L_9557704_SNP [dm3] 2L_9557704_SNP [dm6]	G	A	7.247e^-6	1	INTRON jp
3L	453564	3L_453564_DEL [dm3] 3L_453564_DEL [dm6]	TGTT	CA	7.839e^-6	1	INTRON klar
3L	5244152	3L_5244152_SNP [dm3] 3L_5251052_SNP [dm6]	C	T	8.065e^-6	1	INTRON shep
2L	1033533	2L_1033533_SNP [dm3] 2L_1033533_SNP [dm6]	G	C	8.288e^-6	1	INTRON IA-2
2R	16478336	2R_16478336_SNP [dm3] 2R_20590831_SNP [dm6]	T	C	9.367e^-6	1	INTRON bl
3L	8466923	3L_8466923_SNP [dm3] 3L_8473823_SNP [dm6]	A	G	9.914e^-6	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5277388	2L_5277388_SNP [dm3] 2L_5277388_SNP [dm6]	T	G	9.962e^-6	1	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13244603	2L_13244603_SNP [dm3] 2L_13244603_SNP [dm6]	G	A	1.147e^-5	1	UPSTREAM snRNA:U5:34A & 1 other EXON CR45330	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	13701189	2R_13701189_SNP [dm3] 2R_17813684_SNP [dm6]	C	T	1.258e^-5	1	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_sna
2R	13701174	2R_13701174_INS [dm3] 2R_17813669_INS [dm6]	A	AA	1.348e^-5	1	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_sna
2L	7048062	2L_7048062_SNP [dm3] 2L_7048062_SNP [dm6]	G	T	1.356e^-5	1	INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5496593	3L_5496593_SNP [dm3] 3L_5503493_SNP [dm6]	A	C	1.426e^-5	1	DOWNSTREAM CG34342 INTERGENIC
2R	18024362	2R_18024362_SNP [dm3] 2R_22136857_SNP [dm6]	T	G	1.439e^-5	1	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5244413	3L_5244413_SNP [dm3] 3L_5251313_SNP [dm6]	C	G	1.590e^-5	1	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12165479	3L_12165479_SNP [dm3] 3L_12172379_SNP [dm6]	G	T	1.605e^-5	1	INTRON Rh7
3L	8822769	3L_8822769_SNP [dm3] 3L_8829669_SNP [dm6]	G	C	1.703e^-5	1	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5277650	2L_5277650_SNP [dm3] 2L_5277650_SNP [dm6]	T	A	1.770e^-5	1	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12292488	2R_12292488_SNP [dm3] 2R_16404983_SNP [dm6]	C	T	1.804e^-5	1	INTRON Sema-2b
3L	5897461	3L_5897461_SNP [dm3] 3L_5904361_SNP [dm6]	T	G	1.809e^-5	1	UTR_3_PRIME CG10486 UPSTREAM CG32413
3L	1399465	3L_1399465_SNP [dm3] 3L_1399465_SNP [dm6]	G	A	1.850e^-5	1	SPLICE_SITE_REGION CG32320 DOWNSTREAM tRNA:CR32324 INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_sens
3L	5244165	3L_5244165_SNP [dm3] 3L_5251065_SNP [dm6]	A	G	1.940e^-5	1	INTRON shep	TF binding site mE1_TFBS_inv
2L	13142094	2L_13142094_SNP [dm3] 2L_13142094_SNP [dm6]	T	G	1.960e^-5	1	DOWNSTREAM CG9928 INTERGENIC
3L	453730	3L_453730_SNP [dm3] 3L_453730_SNP [dm6]	A	T	1.970e^-5	1	INTRON klar
2L	5277617	2L_5277617_SNP [dm3] 2L_5277617_SNP [dm6]	T	C	2.048e^-5	1	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16804318	3R_16804318_SNP [dm3] 3R_20978596_SNP [dm6]	T	A	2.069e^-5	1	UTR_5_PRIME Calx INTRON Calx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12042611	X_12042611_SNP [dm3] X_12148578_SNP [dm6]	T	G	2.142e^-5	1	INTRON Ten-a
3L	1499443	3L_1499443_SNP [dm3] 3L_1499443_SNP [dm6]	T	C	2.143e^-5	1	UTR_5_PRIME pUf68 UPSTREAM scaRNA:MeU2-48 INTRON pUf68	TF binding site mE1_TFBS_cad
2R	16478353	2R_16478353_SNP [dm3] 2R_20590848_SNP [dm6]	A	C	2.293e^-5	1	INTRON bl
3L	20842581	3L_20842581_INS [dm3] 3L_20849481_INS [dm6]	GG	TCA	2.311e^-5	1	INTRON CG32432
X	15666730	X_15666730_SNP [dm3] X_15772697_SNP [dm6]	C	A	2.572e^-5	1	NON_SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
2L	9553187	2L_9553187_SNP [dm3] 2L_9553187_SNP [dm6]	A	G	2.608e^-5	1	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8470830	3L_8470830_SNP [dm3] 3L_8477730_SNP [dm6]	C	G	2.696e^-5	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13142087	2L_13142087_SNP [dm3] 2L_13142087_SNP [dm6]	G	T	2.731e^-5	1	DOWNSTREAM CG9928 INTERGENIC
3L	5496594	3L_5496594_SNP [dm3] 3L_5503494_SNP [dm6]	A	T	2.751e^-5	1	DOWNSTREAM CG34342 INTERGENIC
2L	1033550	2L_1033550_SNP [dm3] 2L_1033550_SNP [dm6]	G	A	2.756e^-5	1	INTRON IA-2
3L	8315384	3L_8315384_SNP [dm3] 3L_8322284_SNP [dm6]	T	A	2.771e^-5	1	DOWNSTREAM CG13670 INTERGENIC
3L	2901686	3L_2901686_SNP [dm3] 3L_2901686_SNP [dm6]	C	T	2.837e^-5	1	INTRON Shab
2R	14389175	2R_14389175_SNP [dm3] 2R_18501670_SNP [dm6]	A	C	2.849e^-5	1	INTERGENIC
3L	9517398	3L_9517398_SNP [dm3] 3L_9524298_SNP [dm6]	A	T	2.877e^-5	1	INTRON CG33700
3L	12514878	3L_12514878_SNP [dm3] 3L_12521778_SNP [dm6]	G	C	2.882e^-5	1	SYNONYMOUS_CODING Gcn5 DOWNSTREAM tral	TF binding site mE1_TFBS_cad
2L	16987595	2L_16987595_DEL [dm3] 2L_16987595_DEL [dm6]	ATAGATAATAGATAGATAGA...	A	2.894e^-5	1	INTRON beat-IIIb
X	17838388	X_17838388_SNP [dm3] X_17944355_SNP [dm6]	G	A	2.964e^-5	1	INTRON Sh
X	16721094	X_16721094_SNP [dm3] X_16827061_SNP [dm6]	A	T	3.041e^-5	1	UTR_3_PRIME CG13004 DOWNSTREAM CG13004 & 1 other
2L	17461320	2L_17461320_INS [dm3] 2L_17461320_INS [dm6]	A	AGTTAACA	3.227e^-5	1	UTR_3_PRIME BicD DOWNSTREAM BicD
2L	1033544	2L_1033544_SNP [dm3] 2L_1033544_SNP [dm6]	G	A	3.288e^-5	1	INTRON IA-2
2L	2312401	2L_2312401_SNP [dm3] 2L_2312401_SNP [dm6]	T	A	3.311e^-5	1	INTRON CG9967 & 1 other
X	12042596	X_12042596_SNP [dm3] X_12148563_SNP [dm6]	A	T	3.374e^-5	1	INTRON Ten-a
X	12042592	X_12042592_SNP [dm3] X_12148559_SNP [dm6]	T	G	3.378e^-5	1	INTRON Ten-a
2L	5277357	2L_5277357_SNP [dm3] 2L_5277357_SNP [dm6]	T	A	3.399e^-5	1	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10588889	2R_10588889_SNP [dm3] 2R_14701384_SNP [dm6]	T	A	3.519e^-5	1	INTRON mspo
2R	14522653	2R_14522653_DEL [dm3] 2R_18635148_DEL [dm6]	TGCTT	T	3.535e^-5	1	INTRON CG30122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18304965	3L_18304965_SNP [dm3] 3L_18311865_SNP [dm6]	G	A	3.549e^-5	1	INTERGENIC
2R	5842223	2R_5842223_SNP [dm3] 2R_9954718_SNP [dm6]	A	T	3.645e^-5	1	INTRON Mef2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6807081	2R_6807081_SNP [dm3] 2R_10919576_SNP [dm6]	G	A	3.705e^-5	1	INTERGENIC
3L	13918590	3L_13918590_SNP [dm3] 3L_13925490_SNP [dm6]	T	A	3.835e^-5	1	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20338355	3L_20338355_SNP [dm3] 3L_20345255_SNP [dm6]	G	A	3.859e^-5	1	DOWNSTREAM Spn77Bc & 1 other EXON CR45385
X	14035079	X_14035079_SNP [dm3] X_14141046_SNP [dm6]	A	T	3.993e^-5	1	UPSTREAM CR44658 INTERGENIC
X	17838358	X_17838358_SNP [dm3] X_17944325_SNP [dm6]	C	A	4.091e^-5	1	INTRON Sh
3L	14272908	3L_14272908_SNP [dm3] 3L_14279808_SNP [dm6]	G	A	4.123e^-5	1	INTRON fz
X	12253322	X_12253322_DEL [dm3] X_12359289_DEL [dm6]	CTTAATAAGCGAAGAGTCCT...	C	4.186e^-5	1	INTERGENIC
3R	19068321	3R_19068321_SNP [dm3] 3R_23242599_SNP [dm6]	A	G	4.223e^-5	1	INTRON CG4467
X	8818305	X_8818305_SNP [dm3] X_8924272_SNP [dm6]	A	G	4.243e^-5	1	SYNONYMOUS_CODING CG43255 UPSTREAM CG12661 & 1 other INTRON rdgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18129846	3L_18129846_SNP [dm3] 3L_18136746_SNP [dm6]	A	T	4.272e^-5	1	UPSTREAM CR44669 INTERGENIC
3L	12165663	3L_12165663_SNP [dm3] 3L_12172563_SNP [dm6]	A	G	4.278e^-5	1	INTRON Rh7
2L	4842954	2L_4842954_SNP [dm3] 2L_4842954_SNP [dm6]	C	T	4.309e^-5	1	UTR_3_PRIME mxt INTRON mxt
2L	17166055	2L_17166055_SNP [dm3] 2L_17166055_SNP [dm6]	C	T	4.415e^-5	1	INTRON beat-IIIa & 1 other
2L	12957256	2L_12957256_SNP [dm3] 2L_12957256_SNP [dm6]	T	C	4.446e^-5	1	INTERGENIC
2L	2651016	2L_2651016_SNP [dm3] 2L_2651016_SNP [dm6]	C	T	4.464e^-5	1	NON_SYNONYMOUS_CODING CG33125
2R	10588879	2R_10588879_SNP [dm3] 2R_14701374_SNP [dm6]	C	T	4.479e^-5	1	INTRON mspo
3L	9283273	3L_9283273_DEL [dm3] 3L_9290173_DEL [dm6]	AATA	A	4.483e^-5	1	INTERGENIC
2R	10588870	2R_10588870_SNP [dm3] 2R_14701365_SNP [dm6]	T	C	4.690e^-5	1	INTRON mspo
3L	15620494	3L_15620494_SNP [dm3] 3L_15627394_SNP [dm6]	A	C	4.913e^-5	1	INTRON comm3
2L	7048716	2L_7048716_SNP [dm3] 2L_7048716_SNP [dm6]	G	A	4.936e^-5	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8470746	3L_8470746_SNP [dm3] 3L_8477646_SNP [dm6]	T	A	4.952e^-5	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16652099	3R_16652099_SNP [dm3] 3R_20826377_SNP [dm6]	T	C	5.030e^-5	1	UPSTREAM CR44047 INTRON AdSS	TF binding site mE1_TFBS_cad
X	16234624	X_16234624_SNP [dm3] X_16340591_SNP [dm6]	G	C	5.089e^-5	1	UTR_3_PRIME Dsp1 DOWNSTREAM Dsp1
2R	11317729	2R_11317729_SNP [dm3] 2R_15430224_SNP [dm6]	A	T	5.090e^-5	1	INTRON CG43729
2R	5335362	2R_5335362_SNP [dm3] 2R_9447857_SNP [dm6]	G	C	5.144e^-5	1	INTRON Camta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8461754	3L_8461754_SNP [dm3] 3L_8468654_SNP [dm6]	G	A	5.288e^-5	1	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad
2R	16476830	2R_16476830_SNP [dm3] 2R_20589325_SNP [dm6]	T	A	5.319e^-5	1	INTRON bl	TF binding site BDTNP1_TFBS_dl
2L	17166079	2L_17166079_SNP [dm3] 2L_17166079_SNP [dm6]	A	G	5.378e^-5	1	INTRON beat-IIIa & 1 other
3L	8823220	3L_8823220_SNP [dm3] 3L_8830120_SNP [dm6]	C	T	5.388e^-5	1	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	19693194	2L_19693194_SNP [dm3] 2L_19693194_SNP [dm6]	A	G	5.482e^-5	1	INTRON Lar
2L	12133554	2L_12133554_SNP [dm3] 2L_12133554_SNP [dm6]	G	C	5.570e^-5	1	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18749746	3R_18749746_SNP [dm3] 3R_22924024_SNP [dm6]	T	C	5.571e^-5	1	SYNONYMOUS_CODING CG6660 INTRON klg	TF binding site mE1_TFBS_chinmo
2L	7048487	2L_7048487_INS [dm3] 2L_7048487_INS [dm6]	T	TTTTGGATATGGTAAT...	5.618e^-5	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7990775	3L_7990775_SNP [dm3] 3L_7997675_SNP [dm6]	C	T	5.632e^-5	1	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12133536	2L_12133536_SNP [dm3] 2L_12133536_SNP [dm6]	G	A	5.632e^-5	1	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	453789	3L_453789_SNP [dm3] 3L_453789_SNP [dm6]	T	G	5.669e^-5	1	INTRON klar
3L	453306	3L_453306_SNP [dm3] 3L_453306_SNP [dm6]	C	A	5.698e^-5	1	SYNONYMOUS_CODING klar UTR_5_PRIME klar INTRON klar
2R	16478272	2R_16478272_SNP [dm3] 2R_20590767_SNP [dm6]	C	A	5.739e^-5	1	INTRON bl
3L	9282082	3L_9282082_SNP [dm3] 3L_9288982_SNP [dm6]	G	A	5.793e^-5	1	DOWNSTREAM GluRIB INTERGENIC
3L	12165653	3L_12165653_SNP [dm3] 3L_12172553_SNP [dm6]	T	C	5.872e^-5	1	INTRON Rh7
2L	1033529	2L_1033529_SNP [dm3] 2L_1033529_SNP [dm6]	T	C	5.875e^-5	1	INTRON IA-2
X	22045918	X_22045918_SNP [dm3] X_22644082_SNP [dm6]	T	A	5.923e^-5	1	INTERGENIC
3R	19068338	3R_19068338_SNP [dm3] 3R_23242616_SNP [dm6]	G	A	5.946e^-5	1	INTRON CG4467
3R	19693094	3R_19693094_SNP [dm3] 3R_23867372_SNP [dm6]	C	G	5.960e^-5	1	INTRON Pli
2L	5400441	2L_5400441_SNP [dm3] 2L_5400441_SNP [dm6]	C	A	6.097e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5400492	2L_5400492_SNP [dm3] 2L_5400492_SNP [dm6]	G	A	6.221e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1034090	2L_1034090_SNP [dm3] 2L_1034090_SNP [dm6]	C	A	6.223e^-5	1	SYNONYMOUS_CODING IA-2
3R	16804302	3R_16804302_DEL [dm3] 3R_20978580_DEL [dm6]	AT	A	6.236e^-5	1	UTR_5_PRIME Calx INTRON Calx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2320679	2L_2320679_SNP [dm3] 2L_2320679_SNP [dm6]	G	T	6.323e^-5	1	INTRON CG9967 & 1 other
2L	5404799	2L_5404799_SNP [dm3] 2L_5404799_SNP [dm6]	C	G	6.376e^-5	1	UTR_5_PRIME H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	11980489	2R_11980489_SNP [dm3] 2R_16092984_SNP [dm6]	C	T	6.398e^-5	1	INTRON Dg	TF binding site BDTNP1_TFBS_dl
2R	11703023	2R_11703023_SNP [dm3] 2R_15815518_SNP [dm6]	G	T	6.400e^-5	1	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12133535	2L_12133535_SNP [dm3] 2L_12133535_SNP [dm6]	G	A	6.434e^-5	1	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9517412	3L_9517412_SNP [dm3] 3L_9524312_SNP [dm6]	C	T	6.471e^-5	1	INTRON CG33700
3R	21348588	3R_21348588_SNP [dm3] 3R_25522866_SNP [dm6]	T	C	6.476e^-5	1	INTRON msi
3L	8471433	3L_8471433_SNP [dm3] 3L_8478333_SNP [dm6]	C	T	6.486e^-5	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5401963	2L_5401963_SNP [dm3] 2L_5401963_SNP [dm6]	C	A	6.542e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	12133563	2L_12133563_INS [dm3] 2L_12133563_INS [dm6]	T	TCATATCTTATTT...	6.560e^-5	1	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12969623	3L_12969623_INS [dm3] 3L_12976523_INS [dm6]	G	GCAG	6.568e^-5	1	INTERGENIC
X	8818341	X_8818341_SNP [dm3] X_8924308_SNP [dm6]	C	T	6.675e^-5	1	SYNONYMOUS_CODING CG43255 UPSTREAM CG12661 & 1 other INTRON rdgA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17746740	2R_17746740_SNP [dm3] 2R_21859235_SNP [dm6]	G	A	6.738e^-5	1	INTERGENIC
2R	7726843	2R_7726843_SNP [dm3] 2R_11839338_SNP [dm6]	C	T	6.776e^-5	1	NON_SYNONYMOUS_CODING Sobp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2805681	2L_2805681_SNP [dm3] 2L_2805681_SNP [dm6]	C	A	6.861e^-5	1	INTRON daw	TF binding site mE1_TFBS_Trl
X	6933675	X_6933675_SNP [dm3] X_7039642_SNP [dm6]	G	A	6.932e^-5	1	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7043440	3L_7043440_DEL [dm3] 3L_7050340_DEL [dm6]	TTG	T	6.976e^-5	1	INTRON Mp
2L	5401551	2L_5401551_SNP [dm3] 2L_5401551_SNP [dm6]	G	A	6.985e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10779427	2L_10779427_SNP [dm3] 2L_10779427_SNP [dm6]	A	G	6.989e^-5	1	INTRON CG31869
3L	12563695	3L_12563695_SNP [dm3] 3L_12570595_SNP [dm6]	C	T	7.043e^-5	1	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12254087	X_12254087_SNP [dm3] X_12360054_SNP [dm6]	T	C	7.047e^-5	1	INTERGENIC
X	12254093	X_12254093_SNP [dm3] X_12360060_SNP [dm6]	G	C	7.047e^-5	1	INTERGENIC
2R	11880670	2R_11880670_SNP [dm3] 2R_15993165_SNP [dm6]	C	T	7.137e^-5	1	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site mE1_TFBS_sens
2R	7464476	2R_7464476_SNP [dm3] 2R_11576971_SNP [dm6]	A	G	7.175e^-5	1	DOWNSTREAM tou INTERGENIC
3L	12790400	3L_12790400_SNP [dm3] 3L_12797300_SNP [dm6]	T	C	7.308e^-5	1	INTRON Atg1
3R	21995699	3R_21995699_SNP [dm3] 3R_26169977_SNP [dm6]	A	G	7.337e^-5	1	UPSTREAM CG31323 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15818040	2R_15818040_SNP [dm3] 2R_19930535_SNP [dm6]	G	T	7.397e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	15021472	X_15021472_SNP [dm3] X_15127439_SNP [dm6]	A	C	7.417e^-5	1	INTRON drd
2L	16974492	2L_16974492_SNP [dm3] 2L_16974492_SNP [dm6]	A	C	7.441e^-5	1	INTRON beat-IIIb
2R	11882035	2R_11882035_SNP [dm3] 2R_15994530_SNP [dm6]	G	A	7.592e^-5	1	SYNONYMOUS_CODING ATPCL DOWNSTREAM CG8320
2L	7041708	2L_7041708_SNP [dm3] 2L_7041708_SNP [dm6]	C	G	7.679e^-5	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13244577	2L_13244577_SNP [dm3] 2L_13244577_SNP [dm6]	A	G	7.699e^-5	1	UPSTREAM snRNA:U5:34A & 1 other INTRON CR45330 EXON CR45330	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	19853729	X_19853729_SNP [dm3] X_19959696_SNP [dm6]	C	T	7.717e^-5	1	UPSTREAM CG12655 INTERGENIC
2L	13226244	2L_13226244_SNP [dm3] 2L_13226244_SNP [dm6]	A	T	7.796e^-5	1	UPSTREAM CG15480 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5843823	2R_5843823_SNP [dm3] 2R_9956318_SNP [dm6]	G	A	7.848e^-5	1	INTRON Mef2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5848766	2R_5848766_SNP [dm3] 2R_9961261_SNP [dm6]	T	A	7.848e^-5	1	INTRON Pal1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11880536	2R_11880536_SNP [dm3] 2R_15993031_SNP [dm6]	C	T	7.897e^-5	1	SYNONYMOUS_CODING CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site mE1_TFBS_sens
3L	12328138	3L_12328138_SNP [dm3] 3L_12335038_SNP [dm6]	C	A	7.974e^-5	1	NON_SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
X	18155593	X_18155593_SNP [dm3] X_18261560_SNP [dm6]	C	T	8.078e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7906129	3L_7906129_SNP [dm3] 3L_7913029_SNP [dm6]	C	T	8.084e^-5	1	SYNONYMOUS_CODING CG8281 DOWNSTREAM CG8111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	16876140	2L_16876140_SNP [dm3] 2L_16876140_SNP [dm6]	G	T	8.095e^-5	1	INTRON CR31781
3L	455234	3L_455234_SNP [dm3] 3L_455234_SNP [dm6]	C	G	8.201e^-5	1	INTRON klar
X	12042589	X_12042589_SNP [dm3] X_12148556_SNP [dm6]	G	T	8.240e^-5	1	INTRON Ten-a
3L	5473609	3L_5473609_SNP [dm3] 3L_5480509_SNP [dm6]	C	A	8.280e^-5	1	NON_SYNONYMOUS_CODING CG4835
2L	1033545	2L_1033545_SNP [dm3] 2L_1033545_SNP [dm6]	C	A	8.360e^-5	1	INTRON IA-2
2R	12082069	2R_12082069_SNP [dm3] 2R_16194564_SNP [dm6]	G	A	8.403e^-5	1	SYNONYMOUS_CODING calypso DOWNSTREAM clu	TF binding site mE1_TFBS_cad
2R	11880650	2R_11880650_SNP [dm3] 2R_15993145_SNP [dm6]	G	A	8.571e^-5	1	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site mE1_TFBS_sens
2L	12133538	2L_12133538_SNP [dm3] 2L_12133538_SNP [dm6]	C	T	8.768e^-5	1	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16349910	3R_16349910_SNP [dm3] 3R_20524188_SNP [dm6]	C	A	8.782e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7908574	3L_7908574_SNP [dm3] 3L_7915474_SNP [dm6]	T	G	8.861e^-5	1	UTR_5_PRIME CG32368 UPSTREAM CG8111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7041711	2L_7041711_SNP [dm3] 2L_7041711_SNP [dm6]	C	T	8.875e^-5	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14387525	2R_14387525_SNP [dm3] 2R_18500020_SNP [dm6]	G	T	8.895e^-5	1	INTERGENIC
3L	5496655	3L_5496655_SNP [dm3] 3L_5503555_SNP [dm6]	T	A	8.918e^-5	1	UTR_3_PRIME CG34342
2R	6343744	2R_6343744_SNP [dm3] 2R_10456239_SNP [dm6]	T	G	8.930e^-5	1	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
X	17522231	X_17522231_SNP [dm3] X_17628198_SNP [dm6]	G	A	8.931e^-5	1	UTR_3_PRIME CG8326 UPSTREAM stas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8466437	3L_8466437_SNP [dm3] 3L_8473337_SNP [dm6]	T	G	8.958e^-5	1	SYNONYMOUS_CODING CG43163 DOWNSTREAM Gug	TF binding site mE1_TFBS_cad
X	6895315	X_6895315_SNP [dm3] X_7001282_SNP [dm6]	G	C	9.047e^-5	1	UTR_3_PRIME Inx2 DOWNSTREAM Inx2 INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6933659	X_6933659_SNP [dm3] X_7039626_SNP [dm6]	G	C	9.128e^-5	1	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11703015	2R_11703015_SNP [dm3] 2R_15815510_SNP [dm6]	T	A	9.271e^-5	1	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14974144	3L_14974144_SNP [dm3] 3L_14981044_SNP [dm6]	G	A	9.332e^-5	1	SYNONYMOUS_CODING CG3349
2L	5713027	2L_5713027_SNP [dm3] 2L_5713027_SNP [dm6]	G	T	9.357e^-5	1	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13954262	2R_13954262_SNP [dm3] 2R_18066757_SNP [dm6]	A	T	9.406e^-5	1	INTRON CG34386
X	6933653	X_6933653_SNP [dm3] X_7039620_SNP [dm6]	C	T	9.432e^-5	1	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11406820	3R_11406820_SNP [dm3] 3R_15581098_SNP [dm6]	T	C	9.500e^-5	1	INTERGENIC
3L	18450963	3L_18450963_SNP [dm3] 3L_18457863_SNP [dm6]	G	T	9.502e^-5	1	UPSTREAM CR44671 INTERGENIC
2L	5277716	2L_5277716_SNP [dm3] 2L_5277716_SNP [dm6]	A	C	9.517e^-5	1	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12563690	3L_12563690_SNP [dm3] 3L_12570590_SNP [dm6]	T	G	9.544e^-5	1	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18700927	3L_18700927_SNP [dm3] 3L_18707827_SNP [dm6]	C	T	9.656e^-5	1	UPSTREAM CR44674 INTERGENIC
3L	16852023	3L_16852023_SNP [dm3] 3L_16858923_SNP [dm6]	G	T	9.729e^-5	1	UPSTREAM sinah DOWNSTREAM sina INTRON Rh4
3L	10912606	3L_10912606_SNP [dm3] 3L_10919506_SNP [dm6]	C	T	9.807e^-5	1	INTERGENIC
2R	17789886	2R_17789886_SNP [dm3] 2R_21902381_SNP [dm6]	C	G	9.825e^-5	1	INTRON Fili
3L	21876136	3L_21876136_INS [dm3] 3L_21883036_INS [dm6]	C	CACTCGGC	9.875e^-5	1	INTRON mub
3L	1688411	3L_1688411_SNP [dm3] 3L_1688411_SNP [dm6]	T	A	9.877e^-5	1	UPSTREAM CG7991 INTRON CG7991
2L	7048477	2L_7048477_SNP [dm3] 2L_7048477_SNP [dm6]	A	G	9.898e^-5	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17746780	2R_17746780_SNP [dm3] 2R_21859275_SNP [dm6]	C	T	1.002e^-4	1	INTERGENIC
3L	8920961	3L_8920961_SNP [dm3] 3L_8927861_SNP [dm6]	A	T	1.013e^-4	1	INTRON Tsp66E
3L	8469403	3L_8469403_SNP [dm3] 3L_8476303_SNP [dm6]	T	G	1.016e^-4	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	18155560	X_18155560_SNP [dm3] X_18261527_SNP [dm6]	G	T	1.017e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8923662	3L_8923662_SNP [dm3] 3L_8930562_SNP [dm6]	T	C	1.029e^-4	1	SYNONYMOUS_CODING Tsp66E
3R	22712784	3R_22712784_SNP [dm3] 3R_26887062_SNP [dm6]	C	T	1.035e^-4	1	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5571297	3L_5571297_SNP [dm3] 3L_5578197_SNP [dm6]	T	C	1.049e^-4	1	UPSTREAM Msr-110 INTERGENIC
3R	12735075	3R_12735075_DEL [dm3] 3R_16909353_DEL [dm6]	AG	A	1.052e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	21872311	3L_21872311_SNP [dm3] 3L_21879211_SNP [dm6]	A	T	1.052e^-4	1	UPSTREAM mub INTRON mub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1033537	2L_1033537_INS [dm3] 2L_1033537_INS [dm6]	A	ATCG	1.076e^-4	1	INTRON IA-2
3R	22712804	3R_22712804_SNP [dm3] 3R_26887082_SNP [dm6]	C	T	1.080e^-4	1	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	21254890	X_21254890_SNP [dm3] X_21383863_SNP [dm6]	C	T	1.081e^-4	1	SYNONYMOUS_CODING slgA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7990782	3L_7990782_SNP [dm3] 3L_7997682_SNP [dm6]	G	C	1.081e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15920689	2R_15920689_DEL [dm3] 2R_20033184_DEL [dm6]	TT	T	1.097e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	19067849	3R_19067849_SNP [dm3] 3R_23242127_SNP [dm6]	G	A	1.107e^-4	1	INTRON CG4467
2L	1919276	2L_1919276_SNP [dm3] 2L_1919276_SNP [dm6]	A	G	1.109e^-4	1	INTRON CG7337
X	13868034	X_13868034_SNP [dm3] X_13974001_SNP [dm6]	T	G	1.118e^-4	1	INTRON mamo
2R	18288642	2R_18288642_SNP [dm3] 2R_22401137_SNP [dm6]	T	A	1.118e^-4	1	INTRON babos	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	3456478	X_3456478_SNP [dm3] X_3562445_SNP [dm6]	G	A	1.122e^-4	1	INTRON CG32791 & 1 other
3R	10550147	3R_10550147_SNP [dm3] 3R_14724425_SNP [dm6]	G	A	1.124e^-4	1	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	14514049	3L_14514049_SNP [dm3] 3L_14520949_SNP [dm6]	T	C	1.124e^-4	1	INTRON bbg & 1 other
2L	1541337	2L_1541337_SNP [dm3] 2L_1541337_SNP [dm6]	C	T	1.126e^-4	1	INTERGENIC
2R	3493411	2R_3493411_SNP [dm3] 2R_7605906_SNP [dm6]	C	G	1.128e^-4	1	INTRON CG1358	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11938469	2L_11938469_SNP [dm3] 2L_11938469_SNP [dm6]	C	T	1.138e^-4	1	SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
2L	3493644	2L_3493644_SNP [dm3] 2L_3493644_SNP [dm6]	A	G	1.139e^-4	1	DOWNSTREAM tim INTERGENIC
X	21085935	X_21085935_SNP [dm3] X_21214908_SNP [dm6]	G	C	1.140e^-4	1	INTRON CG32521	TF binding site mE1_TFBS_chinmo
3R	2732666	3R_2732666_SNP [dm3] 3R_6906944_SNP [dm6]	A	T	1.143e^-4	1	DOWNSTREAM Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11880649	2R_11880649_SNP [dm3] 2R_15993144_SNP [dm6]	A	C	1.147e^-4	1	UPSTREAM Pex11 DOWNSTREAM ATPCL INTRON CG8320	TF binding site mE1_TFBS_sens
2L	17346315	2L_17346315_SNP [dm3] 2L_17346315_SNP [dm6]	G	C	1.154e^-4	1	INTERGENIC
3L	15525319	3L_15525319_SNP [dm3] 3L_15532219_SNP [dm6]	C	A	1.160e^-4	1	UPSTREAM CG43248 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10589404	2R_10589404_SNP [dm3] 2R_14701899_SNP [dm6]	C	T	1.161e^-4	1	INTRON mspo
3R	16824660	3R_16824660_SNP [dm3] 3R_20998938_SNP [dm6]	G	T	1.171e^-4	1	INTRON Calx
2R	20235399	2R_20235399_SNP [dm3] 2R_24347876_SNP [dm6]	T	A	1.174e^-4	1	INTRON bs
3L	8472669	3L_8472669_SNP [dm3] 3L_8479569_SNP [dm6]	C	A	1.178e^-4	1	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	20354164	3L_20354164_SNP [dm3] 3L_20361064_SNP [dm6]	G	A	1.180e^-4	1	SYNONYMOUS_CODING DNApol-alpha60 DOWNSTREAM Toll-9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	5496689	3L_5496689_SNP [dm3] 3L_5503589_SNP [dm6]	G	A	1.182e^-4	1	NON_SYNONYMOUS_CODING CG34342 UTR_3_PRIME CG34342
3L	459007	3L_459007_SNP [dm3] 3L_459007_SNP [dm6]	A	C	1.184e^-4	1	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22045901	X_22045901_SNP [dm3] X_22644065_SNP [dm6]	G	A	1.188e^-4	1	INTERGENIC
2R	15898140	2R_15898140_SNP [dm3] 2R_20010635_SNP [dm6]	C	T	1.190e^-4	1	INTERGENIC
2R	14097783	2R_14097783_SNP [dm3] 2R_18210278_SNP [dm6]	C	T	1.193e^-4	1	EXON CR45147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	19736771	X_19736771_INS [dm3] X_19842738_INS [dm6]	T	TATT	1.195e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20222620	2R_20222620_SNP [dm3] 2R_24335097_SNP [dm6]	C	T	1.222e^-4	1	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3337684	2L_3337684_SNP [dm3] 2L_3337684_SNP [dm6]	A	C	1.235e^-4	1	SYNONYMOUS_CODING E23	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6773494	2L_6773494_SNP [dm3] 2L_6773494_SNP [dm6]	G	T	1.250e^-4	1	UPSTREAM CG11321 & 1 other INTERGENIC
3R	19219600	3R_19219600_SNP [dm3] 3R_23393878_SNP [dm6]	T	G	1.251e^-4	1	INTERGENIC
2L	5276808	2L_5276808_SNP [dm3] 2L_5276808_SNP [dm6]	C	G	1.251e^-4	1	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7312863	3R_7312863_SNP [dm3] 3R_11487141_SNP [dm6]	G	C	1.260e^-4	1	EXON CR45581
3R	20032597	3R_20032597_SNP [dm3] 3R_24206875_SNP [dm6]	T	C	1.265e^-4	1	INTRON twin	TF binding site mE1_TFBS_inv
3R	11506980	3R_11506980_SNP [dm3] 3R_15681258_SNP [dm6]	G	A	1.273e^-4	1	INTRON pxb
3R	11506984	3R_11506984_SNP [dm3] 3R_15681262_SNP [dm6]	G	A	1.273e^-4	1	INTRON pxb
2L	11376264	2L_11376264_SNP [dm3] 2L_11376264_SNP [dm6]	T	C	1.274e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	10777413	2L_10777413_SNP [dm3] 2L_10777413_SNP [dm6]	T	A	1.286e^-4	1	INTRON CG31869
3L	18694625	3L_18694625_SNP [dm3] 3L_18701525_SNP [dm6]	G	C	1.288e^-4	1	INTERGENIC
3L	5502649	3L_5502649_SNP [dm3] 3L_5509549_SNP [dm6]	T	G	1.290e^-4	1	INTRON CG34342	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	23954922	3L_23954922_SNP [dm3] 3L_23961822_SNP [dm6]	C	G	1.291e^-4	1	INTRON CG40470
3L	3145052	3L_3145052_SNP [dm3] 3L_3145052_SNP [dm6]	C	T	1.298e^-4	1	NON_SYNONYMOUS_CODING CG1291 DOWNSTREAM CG12082	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11891632	2L_11891632_SNP [dm3] 2L_11891632_SNP [dm6]	C	T	1.314e^-4	1	INTRON Pde1c
3L	18304779	3L_18304779_SNP [dm3] 3L_18311679_SNP [dm6]	C	A	1.318e^-4	1	INTERGENIC
2L	13170421	2L_13170421_SNP [dm3] 2L_13170421_SNP [dm6]	G	T	1.323e^-4	1	UTR_3_PRIME Sfmbt DOWNSTREAM Sir2
2L	5400493	2L_5400493_SNP [dm3] 2L_5400493_SNP [dm6]	G	C	1.327e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8474012	3L_8474012_SNP [dm3] 3L_8480912_SNP [dm6]	G	A	1.329e^-4	1	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12733578	3R_12733578_SNP [dm3] 3R_16907856_SNP [dm6]	G	C	1.340e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_HSA
2R	18188535	2R_18188535_SNP [dm3] 2R_22301030_SNP [dm6]	G	T	1.340e^-4	1	INTRON wdp	TF binding site mE1_TFBS_cad
3R	7178539	3R_7178539_SNP [dm3] 3R_11352817_SNP [dm6]	A	T	1.343e^-4	1	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15967345	2L_15967345_DEL [dm3] 2L_15967345_DEL [dm6]	CAGCAATTAAA...	C	1.354e^-4	1	INTERGENIC
3R	19219354	3R_19219354_SNP [dm3] 3R_23393632_SNP [dm6]	G	C	1.377e^-4	1	INTERGENIC
3L	6276778	3L_6276778_SNP [dm3] 3L_6283678_SNP [dm6]	C	T	1.377e^-4	1	INTERGENIC
2R	10029195	2R_10029195_SNP [dm3] 2R_14141690_SNP [dm6]	A	G	1.381e^-4	1	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6266163	2L_6266163_SNP [dm3] 2L_6266163_SNP [dm6]	G	A	1.392e^-4	1	INTRON Ddr
X	4569066	X_4569066_SNP [dm3] X_4675033_SNP [dm6]	C	A	1.393e^-4	1	INTRON rap
2R	11880698	2R_11880698_SNP [dm3] 2R_15993193_SNP [dm6]	T	C	1.402e^-4	1	SYNONYMOUS_CODING CG8320 UPSTREAM Pex11 DOWNSTREAM ATPCL	TF binding site mE1_TFBS_sens
3L	1598430	3L_1598430_SNP [dm3] 3L_1598430_SNP [dm6]	T	A	1.407e^-4	1	INTRON CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1598438	3L_1598438_SNP [dm3] 3L_1598438_SNP [dm6]	A	T	1.407e^-4	1	INTRON CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8321630	3L_8321630_SNP [dm3] 3L_8328530_SNP [dm6]	T	C	1.407e^-4	1	UPSTREAM CG34462 DOWNSTREAM CG34461 INTERGENIC
3L	17424413	3L_17424413_SNP [dm3] 3L_17431313_SNP [dm6]	G	A	1.415e^-4	1	UTR_5_PRIME CG32174 UTR_3_PRIME frc DOWNSTREAM frc INTRON CG32174	TF binding site BDTNP1_TFBS_Med
2L	3457772	2L_3457772_SNP [dm3] 2L_3457772_SNP [dm6]	C	A	1.418e^-4	1	SYNONYMOUS_CODING Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	12735065	3R_12735065_SNP [dm3] 3R_16909343_SNP [dm6]	A	C	1.419e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8923029	3L_8923029_SNP [dm3] 3L_8929929_SNP [dm6]	C	A	1.420e^-4	1	INTRON Tsp66E
3L	8923036	3L_8923036_SNP [dm3] 3L_8929936_SNP [dm6]	A	T	1.420e^-4	1	INTRON Tsp66E
3L	8923326	3L_8923326_MNP [dm3] 3L_8930226_MNP [dm6]	GCG	ATT	1.420e^-4	1	INTRON Tsp66E
3L	4437285	3L_4437285_SNP [dm3] 3L_4437285_SNP [dm6]	G	A	1.432e^-4	1	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
3L	21873219	3L_21873219_DEL [dm3] 3L_21880119_DEL [dm6]	TTGCTGT	T	1.436e^-4	1	INTRON mub	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	18946829	2R_18946829_SNP [dm3] 2R_23059306_SNP [dm6]	G	A	1.437e^-4	1	DOWNSTREAM CG44253 INTRON CG44252
2R	6075871	2R_6075871_SNP [dm3] 2R_10188366_SNP [dm6]	A	G	1.439e^-4	1	INTRON KCNQ
2L	13445812	2L_13445812_DEL [dm3] 2L_13445812_DEL [dm6]	AA	A	1.446e^-4	1	UPSTREAM CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	18489417	3R_18489417_DEL [dm3] 3R_22663695_DEL [dm6]	GA	G	1.447e^-4	1	INTRON CG45058
3R	15761524	3R_15761524_SNP [dm3] 3R_19935802_SNP [dm6]	A	G	1.450e^-4	1	UPSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	20344140	3L_20344140_SNP [dm3] 3L_20351040_SNP [dm6]	T	C	1.453e^-4	1	INTRON eRF1
3R	19239792	3R_19239792_SNP [dm3] 3R_23414070_SNP [dm6]	C	T	1.457e^-4	1	INTRON CG4374
2L	17119220	2L_17119220_SNP [dm3] 2L_17119220_SNP [dm6]	C	A	1.462e^-4	1	INTERGENIC
3R	26259655	3R_26259655_SNP [dm3] 3R_30433933_SNP [dm6]	A	T	1.479e^-4	1	SPLICE_SITE_REGION CG15534 INTRON CG15534
3L	8928951	3L_8928951_SNP [dm3] 3L_8935851_SNP [dm6]	T	G	1.480e^-4	1	SYNONYMOUS_CODING CG43783	TF binding site mE1_TFBS_cad
3L	1688410	3L_1688410_SNP [dm3] 3L_1688410_SNP [dm6]	G	A	1.482e^-4	1	UPSTREAM CG7991 INTRON CG7991
2L	10171579	2L_10171579_SNP [dm3] 2L_10171579_SNP [dm6]	C	T	1.498e^-4	1	INTRON CG44153
3L	15321323	3L_15321323_SNP [dm3] 3L_15328223_SNP [dm6]	A	T	1.507e^-4	1	INTERGENIC
2R	14279759	2R_14279759_DEL [dm3] 2R_18392254_DEL [dm6]	ATAAGCAAGTA...	A	1.509e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10777443	2L_10777443_SNP [dm3] 2L_10777443_SNP [dm6]	G	T	1.512e^-4	1	INTRON CG31869
2L	5403823	2L_5403823_SNP [dm3] 2L_5403823_SNP [dm6]	A	T	1.515e^-4	1	UPSTREAM H15 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5403826	2L_5403826_SNP [dm3] 2L_5403826_SNP [dm6]	A	T	1.515e^-4	1	UPSTREAM H15 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5846323	2R_5846323_SNP [dm3] 2R_9958818_SNP [dm6]	A	G	1.519e^-4	1	UTR_5_PRIME Mef2 UPSTREAM Pal1 DOWNSTREAM CG15863	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16102658	2R_16102658_SNP [dm3] 2R_20215153_SNP [dm6]	G	A	1.540e^-4	1	INTERGENIC
2L	7049774	2L_7049774_DEL [dm3] 2L_7049774_DEL [dm6]	CT	C	1.548e^-4	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	21905032	3L_21905032_SNP [dm3] 3L_21911932_SNP [dm6]	C	T	1.559e^-4	1	INTRON mub	TF binding site BDTNP1_TFBS_twi
2L	2807177	2L_2807177_SNP [dm3] 2L_2807177_SNP [dm6]	C	G	1.559e^-4	1	INTRON daw	TF binding site BDTNP1_TFBS_dl
3R	21348587	3R_21348587_SNP [dm3] 3R_25522865_SNP [dm6]	T	C	1.573e^-4	1	INTRON msi
X	12042617	X_12042617_SNP [dm3] X_12148584_SNP [dm6]	G	T	1.576e^-4	1	INTRON Ten-a
3R	12735063	3R_12735063_SNP [dm3] 3R_16909341_SNP [dm6]	T	C	1.579e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7047622	2L_7047622_SNP [dm3] 2L_7047622_SNP [dm6]	A	G	1.585e^-4	1	INTRON milt	TF binding site BDTNP1_TFBS_hb
3L	8469601	3L_8469601_SNP [dm3] 3L_8476501_SNP [dm6]	T	A	1.598e^-4	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	2652090	2L_2652090_SNP [dm3] 2L_2652090_SNP [dm6]	C	T	1.606e^-4	1	UPSTREAM Prosbeta4R1 INTRON CG33125
3R	6600342	3R_6600342_SNP [dm3] 3R_10774620_SNP [dm6]	A	T	1.607e^-4	1	UTR_3_PRIME CG45078 INTRON CG45076 & 1 other
2R	17709789	2R_17709789_SNP [dm3] 2R_21822284_SNP [dm6]	C	G	1.615e^-4	1	SYNONYMOUS_CODING CG13492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3558790	2R_3558790_SNP [dm3] 2R_7671285_SNP [dm6]	G	T	1.638e^-4	1	UPSTREAM CG12826 INTERGENIC
2R	9599889	2R_9599889_SNP [dm3] 2R_13712384_SNP [dm6]	C	T	1.647e^-4	1	INTRON fas	TF binding site mE1_TFBS_HSA
3L	481381	3L_481381_SNP [dm3] 3L_481381_SNP [dm6]	C	T	1.656e^-4	1	INTRON klar	TF binding site mE1_TFBS_cad
3L	10181189	3L_10181189_SNP [dm3] 3L_10188089_SNP [dm6]	G	A	1.658e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5845349	2R_5845349_SNP [dm3] 2R_9957844_SNP [dm6]	G	A	1.662e^-4	1	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	16834035	2R_16834035_SNP [dm3] 2R_20946530_SNP [dm6]	C	T	1.669e^-4	1	DOWNSTREAM snoRNA:660 & 1 other INTERGENIC
2R	5845776	2R_5845776_SNP [dm3] 2R_9958271_SNP [dm6]	C	A	1.673e^-4	1	START_GAINED Mef2 UTR_5_PRIME Mef2 DOWNSTREAM CG15863	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13607843	3R_13607843_SNP [dm3] 3R_17782121_SNP [dm6]	T	C	1.678e^-4	1	INTRON CG43102
3L	7903840	3L_7903840_SNP [dm3] 3L_7910740_SNP [dm6]	A	G	1.681e^-4	1	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10550149	3R_10550149_SNP [dm3] 3R_14724427_SNP [dm6]	T	A	1.687e^-4	1	UPSTREAM kibra DOWNSTREAM CG7530 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
X	3486618	X_3486618_INS [dm3] X_3592585_INS [dm6]	A	ACA	1.700e^-4	1	INTRON AstA-R1
2R	18317722	2R_18317722_SNP [dm3] 2R_22430217_SNP [dm6]	G	C	1.706e^-4	1	DOWNSTREAM ppk12 INTERGENIC
3L	3186698	3L_3186698_SNP [dm3] 3L_3186698_SNP [dm6]	G	T	1.719e^-4	1	SPLICE_SITE_DONOR CG32284 UPSTREAM CG14957 DOWNSTREAM CG42494 INTRON CG32284
X	20219677	X_20219677_SNP [dm3] X_20348650_SNP [dm6]	C	T	1.725e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9319081	2L_9319081_SNP [dm3] 2L_9319081_SNP [dm6]	G	C	1.725e^-4	1	INTERGENIC
2L	6773846	2L_6773846_SNP [dm3] 2L_6773846_SNP [dm6]	T	C	1.735e^-4	1	UPSTREAM CG17378 INTERGENIC
3L	6134320	3L_6134320_SNP [dm3] 3L_6141220_SNP [dm6]	A	C	1.747e^-4	1	DOWNSTREAM Cpr65Aw INTERGENIC
3L	1904438	3L_1904438_SNP [dm3] 3L_1904438_SNP [dm6]	G	T	1.754e^-4	1	INTRON CG1887
2R	6807689	2R_6807689_SNP [dm3] 2R_10920184_SNP [dm6]	G	A	1.757e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7728497	2R_7728497_SNP [dm3] 2R_11840992_SNP [dm6]	G	T	1.758e^-4	1	UPSTREAM CG34229 INTERGENIC
2L	7048506	2L_7048506_SNP [dm3] 2L_7048506_SNP [dm6]	A	T	1.761e^-4	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12328128	3L_12328128_SNP [dm3] 3L_12335028_SNP [dm6]	T	C	1.767e^-4	1	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
2L	9551413	2L_9551413_SNP [dm3] 2L_9551413_SNP [dm6]	G	A	1.769e^-4	1	UPSTREAM jp INTRON jp
X	12042397	X_12042397_SNP [dm3] X_12148364_SNP [dm6]	A	G	1.769e^-4	1	INTRON Ten-a
2R	11882373	2R_11882373_SNP [dm3] 2R_15994868_SNP [dm6]	G	A	1.771e^-4	1	SYNONYMOUS_CODING ATPCL
3L	8474280	3L_8474280_SNP [dm3] 3L_8481180_SNP [dm6]	G	A	1.777e^-4	1	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7048481	2L_7048481_SNP [dm3] 2L_7048481_SNP [dm6]	T	G	1.780e^-4	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16478145	2R_16478145_SNP [dm3] 2R_20590640_SNP [dm6]	C	A	1.799e^-4	1	INTRON bl	TF binding site BDTNP1_TFBS_twi
3L	8820586	3L_8820586_SNP [dm3] 3L_8827486_SNP [dm6]	T	G	1.799e^-4	1	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19247554	3R_19247554_SNP [dm3] 3R_23421832_SNP [dm6]	G	A	1.807e^-4	1	INTRON CG4374
2R	5832905	2R_5832905_SNP [dm3] 2R_9945400_SNP [dm6]	C	T	1.819e^-4	1	UPSTREAM Mef2 INTRON Mef2
3L	11178750	3L_11178750_SNP [dm3] 3L_11185650_SNP [dm6]	T	C	1.824e^-4	1	INTRON GlcAT-P
2R	5836957	2R_5836957_SNP [dm3] 2R_9949452_SNP [dm6]	G	C	1.831e^-4	1	INTRON Mef2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18524511	3R_18524511_SNP [dm3] 3R_22698789_SNP [dm6]	T	C	1.833e^-4	1	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13954270	2R_13954270_SNP [dm3] 2R_18066765_SNP [dm6]	A	T	1.840e^-4	1	INTRON CG34386
2L	3457778	2L_3457778_SNP [dm3] 2L_3457778_SNP [dm6]	G	C	1.844e^-4	1	SYNONYMOUS_CODING Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	22045979	X_22045979_SNP [dm3] X_22644143_SNP [dm6]	G	A	1.845e^-4	1	INTERGENIC
2R	16478256	2R_16478256_SNP [dm3] 2R_20590751_SNP [dm6]	T	G	1.847e^-4	1	INTRON bl
2L	16991095	2L_16991095_SNP [dm3] 2L_16991095_SNP [dm6]	T	C	1.851e^-4	1	INTRON beat-IIIb
X	8065711	X_8065711_SNP [dm3] X_8171678_SNP [dm6]	A	G	1.854e^-4	1	SYNONYMOUS_CODING slpr
X	2861710	X_2861710_SNP [dm3] X_2967677_SNP [dm6]	T	A	1.860e^-4	1	INTRON kirre & 1 other
3L	2621665	3L_2621665_SNP [dm3] 3L_2621665_SNP [dm6]	C	A	1.864e^-4	1	INTRON Pxn
3R	12735071	3R_12735071_SNP [dm3] 3R_16909349_SNP [dm6]	G	T	1.867e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11096722	3L_11096722_SNP [dm3] 3L_11103622_SNP [dm6]	T	C	1.868e^-4	1	SYNONYMOUS_CODING CG32071 UPSTREAM Elo68alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6785830	X_6785830_SNP [dm3] X_6891797_SNP [dm6]	C	T	1.878e^-4	1	INTERGENIC
2L	5399737	2L_5399737_SNP [dm3] 2L_5399737_SNP [dm6]	C	T	1.882e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	10267272	X_10267272_SNP [dm3] X_10373239_SNP [dm6]	A	C	1.882e^-4	1	SYNONYMOUS_CODING CG32686 INTRON CG17841
3L	16852019	3L_16852019_SNP [dm3] 3L_16858919_SNP [dm6]	G	T	1.886e^-4	1	UPSTREAM sinah DOWNSTREAM sina INTRON Rh4
3R	21994583	3R_21994583_SNP [dm3] 3R_26168861_SNP [dm6]	A	G	1.887e^-4	1	INTERGENIC
2L	17797245	2L_17797245_SNP [dm3] 2L_17797245_SNP [dm6]	C	G	1.895e^-4	1	INTRON CadN2
3R	19239752	3R_19239752_SNP [dm3] 3R_23414030_SNP [dm6]	A	T	1.898e^-4	1	INTRON CG4374
3R	12735067	3R_12735067_SNP [dm3] 3R_16909345_SNP [dm6]	C	T	1.901e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	21272395	3L_21272395_SNP [dm3] 3L_21279295_SNP [dm6]	G	A	1.911e^-4	1	INTRON AcCoAS	TF binding site mE1_TFBS_sens
2L	1607764	2L_1607764_SNP [dm3] 2L_1607764_SNP [dm6]	A	T	1.915e^-4	1	UTR_3_PRIME haf INTRON CG31935
3L	7505039	3L_7505039_SNP [dm3] 3L_7511939_SNP [dm6]	C	A	1.920e^-4	1	INTRON CG7546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17775509	2L_17775509_SNP [dm3] 2L_17775509_SNP [dm6]	A	T	1.920e^-4	1	INTRON CadN
2L	7499084	2L_7499084_SNP [dm3] 2L_7499084_SNP [dm6]	G	A	1.922e^-4	1	NON_SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad
3L	14972421	3L_14972421_SNP [dm3] 3L_14979321_SNP [dm6]	G	T	1.930e^-4	1	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
X	2779842	X_2779842_SNP [dm3] X_2885809_SNP [dm6]	G	T	1.934e^-4	1	SYNONYMOUS_CODING CG14419 INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2342726	3L_2342726_SNP [dm3] 3L_2342726_SNP [dm6]	G	C	1.938e^-4	1	SYNONYMOUS_CODING MsR1
2R	18024122	2R_18024122_SNP [dm3] 2R_22136617_SNP [dm6]	A	G	1.944e^-4	1	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1233239	2L_1233239_INS [dm3] 2L_1233239_INS [dm6]	C	CC	1.952e^-4	1	INTERGENIC
3R	18699228	3R_18699228_SNP [dm3] 3R_22873506_SNP [dm6]	T	C	1.970e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18344349	2R_18344349_SNP [dm3] 2R_22456844_SNP [dm6]	T	G	1.974e^-4	1	INTRON CG10384
2L	7504359	2L_7504359_SNP [dm3] 2L_7504359_SNP [dm6]	A	C	1.976e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9276034	3L_9276034_SNP [dm3] 3L_9282934_SNP [dm6]	T	C	1.986e^-4	1	SYNONYMOUS_CODING GluRIB
2L	2320557	2L_2320557_SNP [dm3] 2L_2320557_SNP [dm6]	T	A	1.988e^-4	1	INTRON CG9967 & 1 other
2L	12153315	2L_12153315_SNP [dm3] 2L_12153315_SNP [dm6]	C	A	1.993e^-4	1	INTRON CG31760
2R	6690735	2R_6690735_SNP [dm3] 2R_10803230_SNP [dm6]	G	A	1.998e^-4	1	NON_SYNONYMOUS_CODING wde	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12165661	3L_12165661_SNP [dm3] 3L_12172561_SNP [dm6]	C	A	2.003e^-4	1	INTRON Rh7
X	19585917	X_19585917_SNP [dm3] X_19691884_SNP [dm6]	T	C	2.010e^-4	1	SYNONYMOUS_CODING Mer	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6028321	3L_6028321_SNP [dm3] 3L_6035221_SNP [dm6]	C	T	2.021e^-4	1	UTR_5_PRIME yip7 UPSTREAM CG10477	TF binding site mE1_TFBS_cad
2R	17917261	2R_17917261_SNP [dm3] 2R_22029756_SNP [dm6]	C	T	2.023e^-4	1	INTRON CG34370
2L	7048493	2L_7048493_SNP [dm3] 2L_7048493_SNP [dm6]	C	T	2.025e^-4	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18317937	2R_18317937_SNP [dm3] 2R_22430432_SNP [dm6]	G	A	2.039e^-4	1	DOWNSTREAM ppk12 INTERGENIC
X	13515601	X_13515601_SNP [dm3] X_13621568_SNP [dm6]	G	A	2.043e^-4	1	INTRON CG2691
2L	3339716	2L_3339716_SNP [dm3] 2L_3339716_SNP [dm6]	G	A	2.044e^-4	1	INTRON E23	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	24220121	3L_24220121_SNP [dm3] 3L_24227021_SNP [dm6]	A	C	2.046e^-4	1	INTRON Snap25
2R	8905042	2R_8905042_SNP [dm3] 2R_13017537_SNP [dm6]	T	G	2.056e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1426736	2L_1426736_SNP [dm3] 2L_1426736_SNP [dm6]	T	C	2.056e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr
3L	451793	3L_451793_SNP [dm3] 3L_451793_SNP [dm6]	A	G	2.066e^-4	1	INTRON klar	TF binding site mE1_TFBS_chinmo
2L	10777460	2L_10777460_SNP [dm3] 2L_10777460_SNP [dm6]	A	C	2.081e^-4	1	INTRON CG31869
2L	15973097	2L_15973097_INS [dm3] 2L_15973097_INS [dm6]	T	GTGAAAAA	2.085e^-4	1	INTERGENIC
X	12042409	X_12042409_SNP [dm3] X_12148376_SNP [dm6]	G	T	2.090e^-4	1	INTRON Ten-a
3L	6054419	3L_6054419_SNP [dm3] 3L_6061319_SNP [dm6]	A	G	2.094e^-4	1	NON_SYNONYMOUS_CODING CG6592 DOWNSTREAM CG10472
X	19343195	X_19343195_SNP [dm3] X_19449162_SNP [dm6]	C	G	2.099e^-4	1	INTRON kek5
3L	24244752	3L_24244752_SNP [dm3] 3L_24251652_SNP [dm6]	A	T	2.100e^-4	1	INTRON Snap25	transposable element DHGP
2L	1394453	2L_1394453_SNP [dm3] 2L_1394453_SNP [dm6]	C	G	2.112e^-4	1	INTRON lea
3L	8923393	3L_8923393_SNP [dm3] 3L_8930293_SNP [dm6]	A	T	2.113e^-4	1	INTRON Tsp66E
3L	21876911	3L_21876911_DEL [dm3] 3L_21883811_DEL [dm6]	TGCATCAGCATTACTTAT...	T	2.119e^-4	1	DOWNSTREAM CR43878 INTRON mub
2L	2330825	2L_2330825_SNP [dm3] 2L_2330825_SNP [dm6]	C	A	2.120e^-4	1	INTRON CG9967 & 1 other
2L	2330853	2L_2330853_SNP [dm3] 2L_2330853_SNP [dm6]	T	A	2.151e^-4	1	INTRON CG9967 & 1 other
2L	10776175	2L_10776175_SNP [dm3] 2L_10776175_SNP [dm6]	A	G	2.152e^-4	1	INTRON CG31869
2L	7048527	2L_7048527_SNP [dm3] 2L_7048527_SNP [dm6]	C	T	2.153e^-4	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
X	18155577	X_18155577_SNP [dm3] X_18261544_SNP [dm6]	T	G	2.156e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15546076	X_15546076_SNP [dm3] X_15652043_SNP [dm6]	G	C	2.160e^-4	1	INTERGENIC
2L	1394368	2L_1394368_SNP [dm3] 2L_1394368_SNP [dm6]	A	G	2.161e^-4	1	INTRON lea
2R	10855683	2R_10855683_SNP [dm3] 2R_14968178_SNP [dm6]	C	G	2.167e^-4	1	INTRON ckn	TF binding site mE1_TFBS_HSA
3L	11746715	3L_11746715_SNP [dm3] 3L_11753615_SNP [dm6]	T	C	2.167e^-4	1	INTRON CG6024
X	17245373	X_17245373_DEL [dm3] X_17351340_DEL [dm6]	AACGCTCCA	A	2.176e^-4	1	INTERGENIC
2R	5835627	2R_5835627_SNP [dm3] 2R_9948122_SNP [dm6]	A	T	2.177e^-4	1	INTRON Mef2
3L	23009820	3L_23009820_SNP [dm3] 3L_23016720_SNP [dm6]	T	A	2.178e^-4	1	INTRON nrm	transposable element FlyBase
2L	6773702	2L_6773702_SNP [dm3] 2L_6773702_SNP [dm6]	A	C	2.183e^-4	1	UPSTREAM CG11321 & 1 other INTERGENIC
2R	10589401	2R_10589401_SNP [dm3] 2R_14701896_SNP [dm6]	G	C	2.200e^-4	1	INTRON mspo
3R	12734967	3R_12734967_SNP [dm3] 3R_16909245_SNP [dm6]	T	C	2.204e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8586164	2R_8586164_SNP [dm3] 2R_12698659_SNP [dm6]	T	C	2.208e^-4	1	INTERGENIC
2L	13128030	2L_13128030_SNP [dm3] 2L_13128030_SNP [dm6]	G	T	2.210e^-4	1	INTERGENIC
X	12262500	X_12262500_SNP [dm3] X_12368467_SNP [dm6]	T	A	2.211e^-4	1	INTERGENIC
3L	10259730	3L_10259730_SNP [dm3] 3L_10266630_SNP [dm6]	G	T	2.212e^-4	1	INTRON can	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15768682	2R_15768682_SNP [dm3] 2R_19881177_SNP [dm6]	T	G	2.220e^-4	1	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	12133560	2L_12133560_SNP [dm3] 2L_12133560_SNP [dm6]	A	T	2.221e^-4	1	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25466475	3R_25466475_SNP [dm3] 3R_29640753_SNP [dm6]	G	A	2.223e^-4	1	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_chinmo
X	12238340	X_12238340_SNP [dm3] X_12344307_SNP [dm6]	G	T	2.242e^-4	1	INTERGENIC
3L	12165879	3L_12165879_SNP [dm3] 3L_12172779_SNP [dm6]	A	T	2.248e^-4	1	INTRON Rh7
X	5972554	X_5972554_SNP [dm3] X_6078521_SNP [dm6]	T	C	2.248e^-4	1	UPSTREAM CG4666 DOWNSTREAM CG4660 INTERGENIC
2L	1389123	2L_1389123_SNP [dm3] 2L_1389123_SNP [dm6]	C	A	2.267e^-4	1	INTRON lea
3L	7549854	3L_7549854_SNP [dm3] 3L_7556754_SNP [dm6]	T	G	2.273e^-4	1	NON_SYNONYMOUS_CODING CG14837	TF binding site mE1_TFBS_sens
3L	10533867	3L_10533867_SNP [dm3] 3L_10540767_SNP [dm6]	T	C	2.275e^-4	1	INTRON A2bp1
2R	11882961	2R_11882961_SNP [dm3] 2R_15995456_SNP [dm6]	T	A	2.280e^-4	1	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_chinmo
2L	17802812	2L_17802812_SNP [dm3] 2L_17802812_SNP [dm6]	A	T	2.284e^-4	1	INTRON CadN2
2L	14303052	2L_14303052_SNP [dm3] 2L_14303052_SNP [dm6]	C	T	2.286e^-4	1	INTRON wb
2R	5332730	2R_5332730_SNP [dm3] 2R_9445225_SNP [dm6]	T	A	2.295e^-4	1	UPSTREAM ced-6 & 1 other DOWNSTREAM CR45321 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16477076	2R_16477076_SNP [dm3] 2R_20589571_SNP [dm6]	T	A	2.298e^-4	1	INTRON bl	TF binding site BDTNP1_TFBS_dl
3L	6282999	3L_6282999_SNP [dm3] 3L_6289899_SNP [dm6]	G	C	2.299e^-4	1	INTERGENIC
2R	8905049	2R_8905049_SNP [dm3] 2R_13017544_SNP [dm6]	A	G	2.304e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14559267	2R_14559267_SNP [dm3] 2R_18671762_SNP [dm6]	T	A	2.304e^-4	1	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17797518	2L_17797518_SNP [dm3] 2L_17797518_SNP [dm6]	C	T	2.305e^-4	1	SYNONYMOUS_CODING CadN2
2L	17938151	2L_17938151_SNP [dm3] 2L_17938151_SNP [dm6]	G	T	2.312e^-4	1	DOWNSTREAM CR44399 INTERGENIC
2L	8373299	2L_8373299_SNP [dm3] 2L_8373299_SNP [dm6]	A	C	2.312e^-4	1	INTRON CG17292	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	17517349	2L_17517349_SNP [dm3] 2L_17517349_SNP [dm6]	G	A	2.314e^-4	1	INTRON Dhc36C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13331216	2L_13331216_SNP [dm3] 2L_13331216_SNP [dm6]	G	T	2.318e^-4	1	UPSTREAM CG43778 INTERGENIC
2R	14537546	2R_14537546_SNP [dm3] 2R_18650041_SNP [dm6]	C	T	2.318e^-4	1	INTRON SP2637
X	14348574	X_14348574_SNP [dm3] X_14454541_SNP [dm6]	A	G	2.322e^-4	1	INTRON dpr8
X	3164586	X_3164586_SNP [dm3] X_3270553_SNP [dm6]	T	C	2.323e^-4	1	INTRON dnc
2L	17799009	2L_17799009_SNP [dm3] 2L_17799009_SNP [dm6]	G	A	2.325e^-4	1	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8771766	3L_8771766_SNP [dm3] 3L_8778666_SNP [dm6]	T	G	2.343e^-4	1	INTRON Fhos	TF binding site mE1_TFBS_cad
3R	12644642	3R_12644642_SNP [dm3] 3R_16818920_SNP [dm6]	G	T	2.360e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9659466	3R_9659466_SNP [dm3] 3R_13833744_SNP [dm6]	A	G	2.362e^-4	1	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	17631855	2L_17631855_SNP [dm3] 2L_17631855_SNP [dm6]	A	G	2.364e^-4	1	INTERGENIC
3L	10387083	3L_10387083_SNP [dm3] 3L_10393983_SNP [dm6]	C	T	2.370e^-4	1	INTERGENIC
2L	3938019	2L_3938019_DEL [dm3] 2L_3938019_DEL [dm6]	CATTCCCC	C	2.373e^-4	1	INTRON fred
3L	8466245	3L_8466245_SNP [dm3] 3L_8473145_SNP [dm6]	C	T	2.373e^-4	1	SYNONYMOUS_CODING CG43163 DOWNSTREAM Gug	TF binding site mE1_TFBS_cad
3R	16652344	3R_16652344_SNP [dm3] 3R_20826622_SNP [dm6]	A	G	2.376e^-4	1	UPSTREAM CR44047 INTRON AdSS
3L	18059102	3L_18059102_SNP [dm3] 3L_18066002_SNP [dm6]	A	T	2.380e^-4	1	INTERGENIC
X	9790675	X_9790675_SNP [dm3] X_9896642_SNP [dm6]	T	C	2.388e^-4	1	INTRON CG15249
2R	19022367	2R_19022367_SNP [dm3] 2R_23134844_SNP [dm6]	C	T	2.398e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2643085	3L_2643085_SNP [dm3] 3L_2643085_SNP [dm6]	T	G	2.411e^-4	1	INTRON CG14949
X	22045974	X_22045974_SNP [dm3] X_22644138_SNP [dm6]	A	T	2.411e^-4	1	INTERGENIC
3R	10825186	3R_10825186_SNP [dm3] 3R_14999464_SNP [dm6]	G	A	2.417e^-4	1	INTERGENIC
X	19230267	X_19230267_SNP [dm3] X_19336234_SNP [dm6]	A	T	2.430e^-4	1	INTRON nAChRalpha7
2L	18201944	2L_18201944_SNP [dm3] 2L_18201944_SNP [dm6]	C	A	2.432e^-4	1	DOWNSTREAM CR43413 INTRON CG42750
3L	12861631	3L_12861631_INS [dm3] 3L_12868531_INS [dm6]	A	AT	2.435e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	10822513	3R_10822513_SNP [dm3] 3R_14996791_SNP [dm6]	T	A	2.443e^-4	1	INTERGENIC
2L	2330870	2L_2330870_SNP [dm3] 2L_2330870_SNP [dm6]	T	A	2.453e^-4	1	INTRON CG9967 & 1 other
3R	18523232	3R_18523232_SNP [dm3] 3R_22697510_SNP [dm6]	C	T	2.464e^-4	1	SYNONYMOUS_CODING cd UPSTREAM Cyp6d4	TF binding site mE1_TFBS_cad
2L	4791163	2L_4791163_SNP [dm3] 2L_4791163_SNP [dm6]	G	A	2.471e^-4	1	INTRON CG15630
2R	18188621	2R_18188621_SNP [dm3] 2R_22301116_SNP [dm6]	G	T	2.490e^-4	1	INTRON wdp	TF binding site mE1_TFBS_cad
3L	12165648	3L_12165648_MNP [dm3] 3L_12172548_MNP [dm6]	TTG	GAT	2.504e^-4	1	INTRON Rh7
3L	20907527	3L_20907527_SNP [dm3] 3L_20914427_SNP [dm6]	T	C	2.507e^-4	1	UPSTREAM CR43930 INTERGENIC
2R	14388920	2R_14388920_SNP [dm3] 2R_18501415_SNP [dm6]	A	T	2.521e^-4	1	INTERGENIC
X	8473775	X_8473775_DEL [dm3] X_8579742_DEL [dm6]	CGATGAA	C	2.522e^-4	1	INTRON CG12065
2L	12133869	2L_12133869_SNP [dm3] 2L_12133869_SNP [dm6]	T	C	2.539e^-4	1	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18024261	2R_18024261_SNP [dm3] 2R_22136756_SNP [dm6]	A	G	2.553e^-4	1	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23673604	3R_23673604_SNP [dm3] 3R_27847882_SNP [dm6]	G	A	2.556e^-4	1	DOWNSTREAM Or98a INTRON CG34353
3L	5906261	3L_5906261_SNP [dm3] 3L_5913161_SNP [dm6]	G	A	2.556e^-4	1	INTRON CG13288
2R	14279716	2R_14279716_SNP [dm3] 2R_18392211_SNP [dm6]	G	T	2.559e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7599497	2L_7599497_SNP [dm3] 2L_7599497_SNP [dm6]	T	C	2.563e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10762222	3L_10762222_INS [dm3] 3L_10769122_INS [dm6]	T	TGT	2.566e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12258527	3L_12258527_DEL [dm3] 3L_12265427_DEL [dm6]	AA	A	2.591e^-4	1	INTRON app	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	7701209	2R_7701209_SNP [dm3] 2R_11813704_SNP [dm6]	A	T	2.595e^-4	1	UTR_3_PRIME ths
2L	18213748	2L_18213748_SNP [dm3] 2L_18213748_SNP [dm6]	G	C	2.597e^-4	1	INTRON CG42750
2L	7048814	2L_7048814_SNP [dm3] 2L_7048814_SNP [dm6]	G	T	2.611e^-4	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6807702	2R_6807702_SNP [dm3] 2R_10920197_SNP [dm6]	A	G	2.612e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15728830	2R_15728830_SNP [dm3] 2R_19841325_SNP [dm6]	A	T	2.612e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	5897413	3L_5897413_INS [dm3] 3L_5904313_INS [dm6]	A	AA	2.619e^-4	1	UTR_3_PRIME CG10486 UPSTREAM CG32413
2L	1930705	2L_1930705_SNP [dm3] 2L_1930705_SNP [dm6]	A	T	2.631e^-4	1	INTRON CG7337
2L	5365273	2L_5365273_SNP [dm3] 2L_5365273_SNP [dm6]	T	C	2.631e^-4	1	UTR_3_PRIME nompC
2L	4931637	2L_4931637_SNP [dm3] 2L_4931637_SNP [dm6]	A	T	2.632e^-4	1	INTRON hoe1
2R	10888141	2R_10888141_SNP [dm3] 2R_15000636_SNP [dm6]	T	G	2.635e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12787232	3L_12787232_SNP [dm3] 3L_12794132_SNP [dm6]	C	T	2.635e^-4	1	SYNONYMOUS_CODING CG42709 INTRON Atg1	TF binding site mE1_TFBS_inv
3L	23022736	3L_23022736_SNP [dm3] 3L_23029636_SNP [dm6]	A	T	2.636e^-4	1	INTRON nrm
2L	15885956	2L_15885956_DEL [dm3] 2L_15885956_DEL [dm6]	ACTCCTTTAC	CA	2.636e^-4	1	INTERGENIC
2L	16974558	2L_16974558_SNP [dm3] 2L_16974558_SNP [dm6]	A	G	2.638e^-4	1	INTRON beat-IIIb
2L	16015282	2L_16015282_SNP [dm3] 2L_16015282_SNP [dm6]	G	A	2.638e^-4	1	INTRON beat-Ic
3R	4152993	3R_4152993_SNP [dm3] 3R_8327271_SNP [dm6]	A	G	2.642e^-4	1	INTRON Poxm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9592171	2R_9592171_SNP [dm3] 2R_13704666_SNP [dm6]	T	C	2.642e^-4	1	INTRON fas
2L	9950238	2L_9950238_SNP [dm3] 2L_9950238_SNP [dm6]	G	C	2.652e^-4	1	DOWNSTREAM mir-87 INTERGENIC
3L	4726975	3L_4726975_SNP [dm3] 3L_4726975_SNP [dm6]	C	G	2.668e^-4	1	INTRON RhoGEF64C
2L	2805738	2L_2805738_SNP [dm3] 2L_2805738_SNP [dm6]	T	A	2.674e^-4	1	INTRON daw
3L	9398926	3L_9398926_SNP [dm3] 3L_9405826_SNP [dm6]	C	A	2.676e^-4	1	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022
2L	13160374	2L_13160374_SNP [dm3] 2L_13160374_SNP [dm6]	C	T	2.678e^-4	1	UPSTREAM CG5204 DOWNSTREAM Pk34A INTERGENIC
3R	18745737	3R_18745737_SNP [dm3] 3R_22920015_SNP [dm6]	A	T	2.681e^-4	1	INTRON klg
2L	9550601	2L_9550601_SNP [dm3] 2L_9550601_SNP [dm6]	C	T	2.683e^-4	1	UTR_5_PRIME jp INTRON jp	TF binding site mE1_TFBS_cad
2R	15318278	2R_15318278_SNP [dm3] 2R_19430773_SNP [dm6]	T	A	2.688e^-4	1	UTR_3_PRIME Fak DOWNSTREAM CalpA
X	17522545	X_17522545_SNP [dm3] X_17628512_SNP [dm6]	G	A	2.691e^-4	1	SYNONYMOUS_CODING CG8326 UPSTREAM stas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15152522	X_15152522_DEL [dm3] X_15258489_DEL [dm6]	GG	G	2.708e^-4	1	INTERGENIC
2L	18286524	2L_18286524_SNP [dm3] 2L_18286524_SNP [dm6]	T	G	2.713e^-4	1	UPSTREAM CG31787 INTERGENIC
2L	9726749	2L_9726749_DEL [dm3] 2L_9726749_DEL [dm6]	TTGGT	T	2.719e^-4	1	INTRON Nckx30C
3L	8791730	3L_8791730_SNP [dm3] 3L_8798630_SNP [dm6]	C	A	2.723e^-4	1	UTR_3_PRIME Fhos DOWNSTREAM CG13310
2R	5841213	2R_5841213_SNP [dm3] 2R_9953708_SNP [dm6]	G	A	2.731e^-4	1	INTRON Mef2
2L	13193629	2L_13193629_SNP [dm3] 2L_13193629_SNP [dm6]	A	T	2.740e^-4	1	INTRON Edem2	TF binding site mE1_TFBS_cad
3L	19511977	3L_19511977_SNP [dm3] 3L_19518877_SNP [dm6]	T	A	2.742e^-4	1	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3R	17910275	3R_17910275_SNP [dm3] 3R_22084553_SNP [dm6]	C	T	2.744e^-4	1	DOWNSTREAM CG5778 INTERGENIC
3L	8468312	3L_8468312_SNP [dm3] 3L_8475212_SNP [dm6]	G	A	2.755e^-4	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3731358	2L_3731358_SNP [dm3] 2L_3731358_SNP [dm6]	T	C	2.765e^-4	1	INTRON CG10019
X	18155545	X_18155545_SNP [dm3] X_18261512_SNP [dm6]	A	C	2.770e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6933677	X_6933677_DEL [dm3] X_7039644_DEL [dm6]	CC	C	2.775e^-4	1	UPSTREAM CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15370847	2R_15370847_SNP [dm3] 2R_19483342_SNP [dm6]	T	C	2.784e^-4	1	DOWNSTREAM par-1 INTRON par-1	TF binding site BDTNP1_TFBS_da
3R	14361790	3R_14361790_SNP [dm3] 3R_18536068_SNP [dm6]	G	A	2.785e^-4	1	INTRON fru
3R	22565570	3R_22565570_SNP [dm3] 3R_26739848_SNP [dm6]	A	T	2.786e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	20907528	3L_20907528_DEL [dm3] 3L_20914428_DEL [dm6]	AGG	A	2.788e^-4	1	UPSTREAM CR43930 INTERGENIC
2R	6792712	2R_6792712_SNP [dm3] 2R_10905207_SNP [dm6]	A	T	2.791e^-4	1	INTRON CG12943
X	9380388	X_9380388_SNP [dm3] X_9486355_SNP [dm6]	A	G	2.791e^-4	1	INTRON mgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5511302	2L_5511302_SNP [dm3] 2L_5511302_SNP [dm6]	T	A	2.822e^-4	1	INTERGENIC
3L	5499799	3L_5499799_SNP [dm3] 3L_5506699_SNP [dm6]	T	A	2.843e^-4	1	INTRON CG34342
3R	18385841	3R_18385841_SNP [dm3] 3R_22560119_SNP [dm6]	G	A	2.849e^-4	1	SYNONYMOUS_CODING CG5278
3R	16805214	3R_16805214_SNP [dm3] 3R_20979492_SNP [dm6]	T	A	2.870e^-4	1	INTRON Calx
3R	17156009	3R_17156009_SNP [dm3] 3R_21330287_SNP [dm6]	C	T	2.884e^-4	1	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
2L	17802795	2L_17802795_DEL [dm3] 2L_17802795_DEL [dm6]	ATTCCTTA	A	2.909e^-4	1	INTRON CadN2
2L	17802809	2L_17802809_SNP [dm3] 2L_17802809_SNP [dm6]	T	A	2.909e^-4	1	INTRON CadN2
2L	1394457	2L_1394457_SNP [dm3] 2L_1394457_SNP [dm6]	G	A	2.913e^-4	1	INTRON lea
2L	17467352	2L_17467352_SNP [dm3] 2L_17467352_SNP [dm6]	A	G	2.917e^-4	1	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7702047	2R_7702047_SNP [dm3] 2R_11814542_SNP [dm6]	C	A	2.917e^-4	1	DOWNSTREAM ths INTERGENIC
2R	9970722	2R_9970722_SNP [dm3] 2R_14083217_SNP [dm6]	G	A	2.919e^-4	1	INTRON Prosap
2R	7705545	2R_7705545_SNP [dm3] 2R_11818040_SNP [dm6]	G	A	2.929e^-4	1	INTERGENIC
2L	18183125	2L_18183125_SNP [dm3] 2L_18183125_SNP [dm6]	C	T	2.930e^-4	1	SYNONYMOUS_CODING CG7180 INTRON CG42750
2L	15973095	2L_15973095_SNP [dm3] 2L_15973095_SNP [dm6]	C	T	2.932e^-4	1	INTERGENIC
2L	18211512	2L_18211512_SNP [dm3] 2L_18211512_SNP [dm6]	A	G	2.934e^-4	1	INTRON CG42750
2R	14387286	2R_14387286_SNP [dm3] 2R_18499781_SNP [dm6]	C	T	2.940e^-4	1	INTERGENIC
3L	7369248	3L_7369248_SNP [dm3] 3L_7376148_SNP [dm6]	T	G	2.949e^-4	1	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	17746783	2R_17746783_SNP [dm3] 2R_21859278_SNP [dm6]	T	C	2.951e^-4	1	INTERGENIC
3R	25316734	3R_25316734_SNP [dm3] 3R_29491012_SNP [dm6]	T	C	2.954e^-4	1	UTR_3_PRIME CG2006 DOWNSTREAM CG2310 & 1 other INTRON Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5277531	2L_5277531_SNP [dm3] 2L_5277531_SNP [dm6]	T	A	2.966e^-4	1	UPSTREAM Bsg25D INTRON Bsg25D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18571118	2R_18571118_SNP [dm3] 2R_22683613_SNP [dm6]	G	A	2.968e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	1876844	2L_1876844_SNP [dm3] 2L_1876844_SNP [dm6]	C	A	2.969e^-4	1	INTRON CG31663
2L	16921207	2L_16921207_SNP [dm3] 2L_16921207_SNP [dm6]	C	T	2.971e^-4	1	INTERGENIC
3L	9512793	3L_9512793_SNP [dm3] 3L_9519693_SNP [dm6]	C	T	2.972e^-4	1	INTRON CG33700
X	21255722	X_21255722_SNP [dm3] X_21384695_SNP [dm6]	C	A	2.973e^-4	1	UTR_3_PRIME slgA DOWNSTREAM slgA & 1 other
2L	18017768	2L_18017768_SNP [dm3] 2L_18017768_SNP [dm6]	T	C	2.974e^-4	1	INTRON rdo
3L	8924107	3L_8924107_SNP [dm3] 3L_8931007_SNP [dm6]	C	T	2.980e^-4	1	UTR_3_PRIME Tsp66E	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16808525	2R_16808525_INS [dm3] 2R_20921020_INS [dm6]	A	ATATCTGCATATAA...	2.987e^-4	1	INTRON Rx	TF binding site mE1_TFBS_cnc
3R	16805657	3R_16805657_SNP [dm3] 3R_20979935_SNP [dm6]	T	A	2.988e^-4	1	INTRON Calx
2R	18581725	2R_18581725_SNP [dm3] 2R_22694220_SNP [dm6]	T	A	2.989e^-4	1	UTR_3_PRIME robo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8474346	3L_8474346_SNP [dm3] 3L_8481246_SNP [dm6]	C	A	2.991e^-4	1	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15060985	3R_15060985_SNP [dm3] 3R_19235263_SNP [dm6]	G	T	2.999e^-4	1	SPLICE_SITE_REGION unc79 INTRON unc79
3L	8504752	3L_8504752_SNP [dm3] 3L_8511652_SNP [dm6]	C	T	3.001e^-4	1	SYNONYMOUS_CODING CG6745	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7156835	3L_7156835_SNP [dm3] 3L_7163735_SNP [dm6]	C	T	3.002e^-4	1	INTRON Dscam2
3L	16212096	3L_16212096_SNP [dm3] 3L_16218996_SNP [dm6]	T	G	3.002e^-4	1	INTERGENIC
X	6934656	X_6934656_SNP [dm3] X_7040623_SNP [dm6]	G	A	3.011e^-4	1	UTR_5_PRIME CG14427 INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	17656964	2R_17656964_SNP [dm3] 2R_21769459_SNP [dm6]	C	A	3.013e^-4	1	INTRON CG30395	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3889165	3L_3889165_SNP [dm3] 3L_3889165_SNP [dm6]	G	C	3.016e^-4	1	INTERGENIC
3L	3185719	3L_3185719_SNP [dm3] 3L_3185719_SNP [dm6]	G	C	3.033e^-4	1	SYNONYMOUS_CODING CG42494 UPSTREAM CG32284 DOWNSTREAM Girdin
X	12253149	X_12253149_SNP [dm3] X_12359116_SNP [dm6]	A	C	3.034e^-4	1	INTERGENIC
2L	17474759	2L_17474759_SNP [dm3] 2L_17474759_SNP [dm6]	C	T	3.034e^-4	1	UTR_3_PRIME Sgt DOWNSTREAM Aac11	TF binding site mE1_TFBS_cad
2L	17175556	2L_17175556_SNP [dm3] 2L_17175556_SNP [dm6]	A	C	3.035e^-4	1	UPSTREAM CR44394 INTERGENIC
2L	12954028	2L_12954028_SNP [dm3] 2L_12954028_SNP [dm6]	T	C	3.036e^-4	1	INTERGENIC
2R	6807632	2R_6807632_SNP [dm3] 2R_10920127_SNP [dm6]	A	G	3.036e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9112133	2L_9112133_DEL [dm3] 2L_9112133_DEL [dm6]	CC	C	3.055e^-4	1	INTRON Or30a
X	3164409	X_3164409_SNP [dm3] X_3270376_SNP [dm6]	G	C	3.056e^-4	1	INTRON dnc
2L	1587720	2L_1587720_SNP [dm3] 2L_1587720_SNP [dm6]	G	A	3.064e^-4	1	UPSTREAM CG10869 INTRON haf
2L	19732673	2L_19732673_SNP [dm3] 2L_19732673_SNP [dm6]	G	T	3.064e^-4	1	NON_SYNONYMOUS_CODING CG10462 DOWNSTREAM Lar INTRON CG10462
2R	16478238	2R_16478238_SNP [dm3] 2R_20590733_SNP [dm6]	G	A	3.067e^-4	1	INTRON bl
2R	11882388	2R_11882388_SNP [dm3] 2R_15994883_SNP [dm6]	G	C	3.067e^-4	1	SYNONYMOUS_CODING ATPCL
2L	7599472	2L_7599472_SNP [dm3] 2L_7599472_SNP [dm6]	C	T	3.069e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19161981	2R_19161981_INS [dm3] 2R_23274458_INS [dm6]	A	AA	3.072e^-4	1	UTR_5_PRIME ord UPSTREAM ord
2R	13954340	2R_13954340_SNP [dm3] 2R_18066835_SNP [dm6]	C	T	3.082e^-4	1	INTRON CG34386
2R	17860957	2R_17860957_SNP [dm3] 2R_21973452_SNP [dm6]	A	T	3.083e^-4	1	NON_SYNONYMOUS_CODING CG9304	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1699147	2L_1699147_SNP [dm3] 2L_1699147_SNP [dm6]	A	G	3.090e^-4	1	UTR_3_PRIME chinmo DOWNSTREAM chinmo
2R	11882325	2R_11882325_SNP [dm3] 2R_15994820_SNP [dm6]	T	G	3.090e^-4	1	INTRON ATPCL
2L	13194006	2L_13194006_SNP [dm3] 2L_13194006_SNP [dm6]	C	T	3.091e^-4	1	SYNONYMOUS_CODING Edem2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3784136	X_3784136_SNP [dm3] X_3890103_SNP [dm6]	T	A	3.095e^-4	1	SYNONYMOUS_CODING CG15239	TF binding site mE1_TFBS_chinmo
2L	18309139	2L_18309139_SNP [dm3] 2L_18309139_SNP [dm6]	C	T	3.111e^-4	1	UPSTREAM CR44694 & 2 others DOWNSTREAM CG43354 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12262478	X_12262478_SNP [dm3] X_12368445_SNP [dm6]	T	A	3.118e^-4	1	INTERGENIC
2L	7599465	2L_7599465_SNP [dm3] 2L_7599465_SNP [dm6]	C	T	3.123e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18166422	2L_18166422_SNP [dm3] 2L_18166422_SNP [dm6]	G	A	3.133e^-4	1	INTRON CG42750
2R	12295309	2R_12295309_SNP [dm3] 2R_16407804_SNP [dm6]	A	C	3.155e^-4	1	INTRON Sema-2b
3R	25692285	3R_25692285_SNP [dm3] 3R_29866563_SNP [dm6]	G	T	3.158e^-4	1	UPSTREAM Zip99C INTRON Zip99C
X	21258218	X_21258218_SNP [dm3] X_21387191_SNP [dm6]	G	A	3.166e^-4	1	SYNONYMOUS_CODING Hlc UPSTREAM snoRNA:MeU6-A47	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16692573	2R_16692573_SNP [dm3] 2R_20805068_SNP [dm6]	G	A	3.168e^-4	1	INTERGENIC
X	9789941	X_9789941_SNP [dm3] X_9895908_SNP [dm6]	G	A	3.169e^-4	1	INTRON CG15249	TF binding site mE1_TFBS_cad
X	5602396	X_5602396_SNP [dm3] X_5708363_SNP [dm6]	T	C	3.170e^-4	1	NON_SYNONYMOUS_CODING CG4096 UTR_3_PRIME CG4096 DOWNSTREAM CG33080	TF binding site mE1_TFBS_chinmo
3L	17020804	3L_17020804_SNP [dm3] 3L_17027704_SNP [dm6]	C	A	3.172e^-4	1	SYNONYMOUS_CODING CG7730 DOWNSTREAM Fit2
3R	12738525	3R_12738525_DEL [dm3] 3R_16912803_DEL [dm6]	AA	A	3.209e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl
2L	13244677	2L_13244677_SNP [dm3] 2L_13244677_SNP [dm6]	A	C	3.215e^-4	1	UPSTREAM snRNA:U5:34A & 1 other EXON CR45330	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	26350769	3R_26350769_SNP [dm3] 3R_30525047_SNP [dm6]	G	A	3.226e^-4	1	INTRON jdp
3R	19239703	3R_19239703_SNP [dm3] 3R_23413981_SNP [dm6]	C	T	3.230e^-4	1	INTRON CG4374
X	14295438	X_14295438_SNP [dm3] X_14401405_SNP [dm6]	C	T	3.240e^-4	1	INTRON dpr8
2R	18304435	2R_18304435_SNP [dm3] 2R_22416930_SNP [dm6]	A	T	3.242e^-4	1	SYNONYMOUS_CODING qkr58E-2 UPSTREAM CR45152	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11457060	3L_11457060_SNP [dm3] 3L_11463960_SNP [dm6]	T	G	3.254e^-4	1	SYNONYMOUS_CODING CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8756690	3L_8756690_DEL [dm3] 3L_8763590_DEL [dm6]	AA	A	3.259e^-4	1	INTRON Fhos
3L	8484369	3L_8484369_SNP [dm3] 3L_8491269_SNP [dm6]	A	C	3.268e^-4	1	INTRON CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18459065	X_18459065_SNP [dm3] X_18565032_SNP [dm6]	A	C	3.278e^-4	1	UPSTREAM tRNA:CR32546 INTRON Bx
3L	14829502	3L_14829502_SNP [dm3] 3L_14836402_SNP [dm6]	A	T	3.294e^-4	1	INTRON CG17839
2R	18024352	2R_18024352_SNP [dm3] 2R_22136847_SNP [dm6]	A	T	3.298e^-4	1	UPSTREAM a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14332086	3L_14332086_SNP [dm3] 3L_14338986_SNP [dm6]	A	C	3.301e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21253596	X_21253596_SNP [dm3] X_21382569_SNP [dm6]	C	T	3.316e^-4	1	SYNONYMOUS_CODING slgA UTR_5_PRIME slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	20343492	3L_20343492_SNP [dm3] 3L_20350392_SNP [dm6]	G	A	3.318e^-4	1	SYNONYMOUS_CODING eRF1
3L	16481823	3L_16481823_SNP [dm3] 3L_16488723_SNP [dm6]	T	A	3.324e^-4	1	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	14387442	2R_14387442_SNP [dm3] 2R_18499937_SNP [dm6]	A	C	3.336e^-4	1	INTERGENIC
2L	1394460	2L_1394460_SNP [dm3] 2L_1394460_SNP [dm6]	A	C	3.337e^-4	1	INTRON lea
3L	16171802	3L_16171802_SNP [dm3] 3L_16178702_SNP [dm6]	C	T	3.346e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7405069	3L_7405069_SNP [dm3] 3L_7411969_SNP [dm6]	T	A	3.347e^-4	1	INTERGENIC
X	4647917	X_4647917_SNP [dm3] X_4753884_SNP [dm6]	C	G	3.350e^-4	1	INTERGENIC
2L	1670719	2L_1670719_SNP [dm3] 2L_1670719_SNP [dm6]	A	C	3.361e^-4	1	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	5075745	3L_5075745_SNP [dm3] 3L_5075745_SNP [dm6]	C	G	3.361e^-4	1	INTRON Con
3L	18052161	3L_18052161_SNP [dm3] 3L_18059061_SNP [dm6]	G	C	3.377e^-4	1	NON_SYNONYMOUS_CODING Eip75B	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18207620	2L_18207620_SNP [dm3] 2L_18207620_SNP [dm6]	T	A	3.378e^-4	1	DOWNSTREAM CG31802 INTRON CG42750
2L	17162017	2L_17162017_SNP [dm3] 2L_17162017_SNP [dm6]	C	G	3.386e^-4	1	INTRON beat-IIIa & 1 other
2R	10855549	2R_10855549_INS [dm3] 2R_14968044_INS [dm6]	T	TG	3.394e^-4	1	INTRON ckn	TF binding site mE1_TFBS_HSA
3L	13072442	3L_13072442_SNP [dm3] 3L_13079342_SNP [dm6]	T	C	3.402e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6612417	3L_6612417_SNP [dm3] 3L_6619317_SNP [dm6]	G	C	3.404e^-4	1	DOWNSTREAM CG8398 INTERGENIC	insulator Insulator_Class_I.mE01
2L	7599458	2L_7599458_SNP [dm3] 2L_7599458_SNP [dm6]	G	T	3.418e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6792717	2R_6792717_DEL [dm3] 2R_10905212_DEL [dm6]	TGAT	T	3.418e^-4	1	INTRON CG12943
X	12833722	X_12833722_SNP [dm3] X_12939689_SNP [dm6]	T	C	3.429e^-4	1	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10050930	3L_10050930_SNP [dm3] 3L_10057830_SNP [dm6]	A	G	3.444e^-4	1	INTRON dpr6
3R	12644738	3R_12644738_DEL [dm3] 3R_16819016_DEL [dm6]	AGCTTTATCA	A	3.449e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8920905	3L_8920905_SNP [dm3] 3L_8927805_SNP [dm6]	A	G	3.451e^-4	1	INTRON Tsp66E
3L	11096732	3L_11096732_SNP [dm3] 3L_11103632_SNP [dm6]	G	C	3.463e^-4	1	NON_SYNONYMOUS_CODING CG32071 UPSTREAM Elo68alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19367245	3R_19367245_SNP [dm3] 3R_23541523_SNP [dm6]	A	T	3.467e^-4	1	INTERGENIC
3L	4661258	3L_4661258_SNP [dm3] 3L_4661258_SNP [dm6]	A	G	3.468e^-4	1	INTRON axo
X	12042581	X_12042581_SNP [dm3] X_12148548_SNP [dm6]	A	T	3.484e^-4	1	INTRON Ten-a
X	12042520	X_12042520_SNP [dm3] X_12148487_SNP [dm6]	T	G	3.493e^-4	1	INTRON Ten-a
2R	16478087	2R_16478087_SNP [dm3] 2R_20590582_SNP [dm6]	G	A	3.496e^-4	1	INTRON bl	TF binding site BDTNP1_TFBS_twi
2L	9431911	2L_9431911_SNP [dm3] 2L_9431911_SNP [dm6]	G	T	3.497e^-4	1	UPSTREAM FucTB INTRON scat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	15375949	X_15375949_SNP [dm3] X_15481916_SNP [dm6]	G	A	3.505e^-4	1	UPSTREAM CG6340 DOWNSTREAM CG6324 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA transposable element FlyBase
3R	13332165	3R_13332165_SNP [dm3] 3R_17506443_SNP [dm6]	G	A	3.512e^-4	1	UPSTREAM Dscam3 INTERGENIC
2R	18344332	2R_18344332_SNP [dm3] 2R_22456827_SNP [dm6]	G	A	3.515e^-4	1	INTRON CG10384
2L	1033540	2L_1033540_SNP [dm3] 2L_1033540_SNP [dm6]	C	A	3.525e^-4	1	INTRON IA-2
2L	13684312	2L_13684312_SNP [dm3] 2L_13684312_SNP [dm6]	T	A	3.526e^-4	1	INTRON CG31814
3L	5571279	3L_5571279_SNP [dm3] 3L_5578179_SNP [dm6]	A	G	3.530e^-4	1	UPSTREAM Msr-110 INTERGENIC
X	15021363	X_15021363_SNP [dm3] X_15127330_SNP [dm6]	A	G	3.542e^-4	1	INTRON drd
2R	16808499	2R_16808499_SNP [dm3] 2R_20920994_SNP [dm6]	A	G	3.552e^-4	1	INTRON Rx	TF binding site mE1_TFBS_cnc
3L	12499537	3L_12499537_SNP [dm3] 3L_12506437_SNP [dm6]	C	G	3.553e^-4	1	NON_SYNONYMOUS_CODING CG10654 DOWNSTREAM vih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17484346	3L_17484346_INS [dm3] 3L_17491246_INS [dm6]	A	ACAACTAACTTAAACTTGTA...	3.562e^-4	1	INTRON Oatp74D	TF binding site mE1_TFBS_Trl
2L	7053572	2L_7053572_SNP [dm3] 2L_7053572_SNP [dm6]	C	T	3.571e^-4	1	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3164569	X_3164569_SNP [dm3] X_3270536_SNP [dm6]	A	G	3.578e^-4	1	INTRON dnc
3L	14339197	3L_14339197_SNP [dm3] 3L_14346097_SNP [dm6]	C	G	3.584e^-4	1	INTRON fz
2R	16478085	2R_16478085_SNP [dm3] 2R_20590580_SNP [dm6]	T	A	3.588e^-4	1	INTRON bl	TF binding site BDTNP1_TFBS_twi
X	14035088	X_14035088_SNP [dm3] X_14141055_SNP [dm6]	C	A	3.590e^-4	1	UPSTREAM CR44658 INTERGENIC
3L	6506013	3L_6506013_SNP [dm3] 3L_6512913_SNP [dm6]	A	G	3.599e^-4	1	INTRON sfl
2L	1394367	2L_1394367_SNP [dm3] 2L_1394367_SNP [dm6]	T	A	3.601e^-4	1	INTRON lea
3R	16787886	3R_16787886_INS [dm3] 3R_20962164_INS [dm6]	C	CTGAAAC	3.602e^-4	1	INTRON Atpalpha
3R	26361948	3R_26361948_SNP [dm3] 3R_30536226_SNP [dm6]	G	T	3.606e^-4	1	INTRON tmod	TF binding site mE1_TFBS_inv
2L	17797241	2L_17797241_INS [dm3] 2L_17797241_INS [dm6]	A	ACAATCTGTATTCTAG...	3.607e^-4	1	INTRON CadN2
3L	8503918	3L_8503918_SNP [dm3] 3L_8510818_SNP [dm6]	A	G	3.608e^-4	1	NON_SYNONYMOUS_CODING CG6745	TF binding site mE1_TFBS_sens
2R	16478242	2R_16478242_SNP [dm3] 2R_20590737_SNP [dm6]	T	A	3.617e^-4	1	INTRON bl
2L	9443036	2L_9443036_SNP [dm3] 2L_9443036_SNP [dm6]	C	T	3.618e^-4	1	INTRON numb
3L	7777398	3L_7777398_SNP [dm3] 3L_7784298_SNP [dm6]	G	A	3.622e^-4	1	INTRON CG32369
3R	18488865	3R_18488865_SNP [dm3] 3R_22663143_SNP [dm6]	A	G	3.623e^-4	1	INTRON CG45058
3L	8471328	3L_8471328_SNP [dm3] 3L_8478228_SNP [dm6]	T	C	3.626e^-4	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1332657	2L_1332657_SNP [dm3] 2L_1332657_SNP [dm6]	G	A	3.631e^-4	1	INTERGENIC
2L	11377583	2L_11377583_SNP [dm3] 2L_11377583_SNP [dm6]	G	C	3.631e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	16076526	2R_16076526_SNP [dm3] 2R_20189021_SNP [dm6]	G	T	3.638e^-4	1	INTERGENIC
3L	2643335	3L_2643335_SNP [dm3] 3L_2643335_SNP [dm6]	G	A	3.642e^-4	1	SYNONYMOUS_CODING CG14949
2R	5840002	2R_5840002_SNP [dm3] 2R_9952497_SNP [dm6]	A	T	3.644e^-4	1	INTRON Mef2
3R	11580931	3R_11580931_SNP [dm3] 3R_15755209_SNP [dm6]	C	T	3.648e^-4	1	INTERGENIC
3L	1306241	3L_1306241_SNP [dm3] 3L_1306241_SNP [dm6]	T	G	3.661e^-4	1	NON_SYNONYMOUS_CODING CG2277 UPSTREAM CG2469	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	9795748	2R_9795748_SNP [dm3] 2R_13908243_SNP [dm6]	A	T	3.662e^-4	1	UTR_5_PRIME shot INTRON shot	TF binding site mE1_TFBS_cad
3R	15749744	3R_15749744_SNP [dm3] 3R_19924022_SNP [dm6]	C	T	3.669e^-4	1	INTRON CG4462	TF binding site mE1_TFBS_cad
3L	10663715	3L_10663715_SNP [dm3] 3L_10670615_SNP [dm6]	A	G	3.680e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_dl
2R	18203566	2R_18203566_SNP [dm3] 2R_22316061_SNP [dm6]	C	G	3.681e^-4	1	INTRON CR44758
2R	12762044	2R_12762044_SNP [dm3] 2R_16874539_SNP [dm6]	A	G	3.686e^-4	1	SYNONYMOUS_CODING CG6435 DOWNSTREAM CG8910 & 1 other
3L	5499823	3L_5499823_SNP [dm3] 3L_5506723_SNP [dm6]	C	A	3.688e^-4	1	INTRON CG34342
2L	1575765	2L_1575765_SNP [dm3] 2L_1575765_SNP [dm6]	T	A	3.688e^-4	1	INTRON haf
2R	11882829	2R_11882829_SNP [dm3] 2R_15995324_SNP [dm6]	A	G	3.689e^-4	1	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12833718	X_12833718_DEL [dm3] X_12939685_DEL [dm6]	TAT	C	3.692e^-4	1	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12042407	X_12042407_INS [dm3] X_12148374_INS [dm6]	A	AA	3.699e^-4	1	INTRON Ten-a
X	12042521	X_12042521_SNP [dm3] X_12148488_SNP [dm6]	G	T	3.699e^-4	1	INTRON Ten-a
3L	7927348	3L_7927348_SNP [dm3] 3L_7934248_SNP [dm6]	C	G	3.713e^-4	1	UPSTREAM syd INTRON syd	TF binding site mE1_TFBS_cad
2R	18651152	2R_18651152_SNP [dm3] 2R_22763647_SNP [dm6]	G	T	3.718e^-4	1	UPSTREAM CG13527 INTRON CG42260
X	9070689	X_9070689_SNP [dm3] X_9176656_SNP [dm6]	C	T	3.718e^-4	1	UTR_3_PRIME mei-P26
2L	9290071	2L_9290071_SNP [dm3] 2L_9290071_SNP [dm6]	T	A	3.731e^-4	1	INTRON Ggamma30A
2L	16987634	2L_16987634_SNP [dm3] 2L_16987634_SNP [dm6]	G	A	3.734e^-4	1	INTRON beat-IIIb
3R	19219601	3R_19219601_SNP [dm3] 3R_23393879_SNP [dm6]	T	C	3.743e^-4	1	INTERGENIC
3L	11438200	3L_11438200_SNP [dm3] 3L_11445100_SNP [dm6]	T	C	3.744e^-4	1	UPSTREAM CG7557 EXON CR44549
2R	12762068	2R_12762068_SNP [dm3] 2R_16874563_SNP [dm6]	C	T	3.761e^-4	1	SYNONYMOUS_CODING CG6435 DOWNSTREAM CG8910 & 1 other
2L	16583272	2L_16583272_SNP [dm3] 2L_16583272_SNP [dm6]	T	G	3.775e^-4	1	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	5322940	X_5322940_SNP [dm3] X_5428907_SNP [dm6]	G	T	3.776e^-4	1	UPSTREAM CG15784 DOWNSTREAM CG16756 EXON CR45517
2L	5404869	2L_5404869_SNP [dm3] 2L_5404869_SNP [dm6]	T	C	3.777e^-4	1	UTR_5_PRIME H15	TF binding site BDTNP1_TFBS_dl
2L	13299891	2L_13299891_SNP [dm3] 2L_13299891_SNP [dm6]	T	C	3.778e^-4	1	SYNONYMOUS_CODING CG31729	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21063734	3R_21063734_SNP [dm3] 3R_25238012_SNP [dm6]	A	C	3.781e^-4	1	SYNONYMOUS_CODING CG11852
3R	11399481	3R_11399481_SNP [dm3] 3R_15573759_SNP [dm6]	C	G	3.782e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12294536	2R_12294536_INS [dm3] 2R_16407031_INS [dm6]	T	TC	3.786e^-4	1	INTRON Sema-2b
X	5484629	X_5484629_DEL [dm3] X_5590596_DEL [dm6]	ATA	A	3.793e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15917213	2R_15917213_SNP [dm3] 2R_20029708_SNP [dm6]	G	C	3.796e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1394365	2L_1394365_SNP [dm3] 2L_1394365_SNP [dm6]	G	C	3.804e^-4	1	INTRON lea
2R	7839606	2R_7839606_SNP [dm3] 2R_11952101_SNP [dm6]	G	A	3.812e^-4	1	INTRON CG13188
3L	8467481	3L_8467481_SNP [dm3] 3L_8474381_SNP [dm6]	G	A	3.822e^-4	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7433675	3L_7433675_SNP [dm3] 3L_7440575_SNP [dm6]	G	C	3.824e^-4	1	SYNONYMOUS_CODING sphinx2 INTRON CG42458
2L	3382881	2L_3382881_SNP [dm3] 2L_3382881_SNP [dm6]	C	T	3.833e^-4	1	INTERGENIC
2L	12153366	2L_12153366_SNP [dm3] 2L_12153366_SNP [dm6]	A	C	3.834e^-4	1	INTRON CG31760
3L	9227439	3L_9227439_SNP [dm3] 3L_9234339_SNP [dm6]	C	T	3.835e^-4	1	DOWNSTREAM CG4483 INTERGENIC
2R	7375625	2R_7375625_SNP [dm3] 2R_11488120_SNP [dm6]	A	G	3.843e^-4	1	INTRON inv
X	4226716	X_4226716_SNP [dm3] X_4332683_SNP [dm6]	T	C	3.849e^-4	1	INTRON norpA
2L	5711207	2L_5711207_SNP [dm3] 2L_5711207_SNP [dm6]	C	T	3.855e^-4	1	UPSTREAM CG7236 INTRON CG7236
3L	14331237	3L_14331237_SNP [dm3] 3L_14338137_SNP [dm6]	A	T	3.859e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl
2L	5276484	2L_5276484_SNP [dm3] 2L_5276484_SNP [dm6]	A	T	3.866e^-4	1	INTRON Bsg25D	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9644185	2L_9644185_SNP [dm3] 2L_9644185_SNP [dm6]	C	T	3.868e^-4	1	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12042530	X_12042530_DEL [dm3] X_12148497_DEL [dm6]	TTTTGTTG	T	3.869e^-4	1	INTRON Ten-a
3L	4748409	3L_4748409_SNP [dm3] 3L_4748409_SNP [dm6]	C	T	3.869e^-4	1	INTRON RhoGEF64C
3R	18452525	3R_18452525_SNP [dm3] 3R_22626803_SNP [dm6]	A	T	3.871e^-4	1	UPSTREAM loco INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6133248	2L_6133248_SNP [dm3] 2L_6133248_SNP [dm6]	T	C	3.885e^-4	1	DOWNSTREAM CR45719 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17060759	2L_17060759_SNP [dm3] 2L_17060759_SNP [dm6]	A	T	3.885e^-4	1	INTERGENIC
X	13872554	X_13872554_SNP [dm3] X_13978521_SNP [dm6]	G	A	3.913e^-4	1	INTRON mamo
2L	5284689	2L_5284689_SNP [dm3] 2L_5284689_SNP [dm6]	C	T	3.914e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	3164403	X_3164403_SNP [dm3] X_3270370_SNP [dm6]	T	A	3.921e^-4	1	INTRON dnc
X	5667575	X_5667575_SNP [dm3] X_5773542_SNP [dm6]	C	T	3.932e^-4	1	SYNONYMOUS_CODING CG42264 INTRON CG42699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17021466	3L_17021466_SNP [dm3] 3L_17028366_SNP [dm6]	T	C	3.938e^-4	1	SYNONYMOUS_CODING CG7730	TF binding site mE1_TFBS_chinmo
2L	4779874	2L_4779874_SNP [dm3] 2L_4779874_SNP [dm6]	G	A	3.939e^-4	1	INTRON CG15630
X	19585982	X_19585982_SNP [dm3] X_19691949_SNP [dm6]	A	G	3.942e^-4	1	INTRON Mer	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5972563	X_5972563_SNP [dm3] X_6078530_SNP [dm6]	T	A	3.943e^-4	1	UPSTREAM CG4666 DOWNSTREAM CG4660 INTERGENIC
3R	13331895	3R_13331895_INS [dm3] 3R_17506173_INS [dm6]	A	AA	3.944e^-4	1	UPSTREAM Dscam3 INTERGENIC
X	13057258	X_13057258_SNP [dm3] X_13163225_SNP [dm6]	G	T	3.944e^-4	1	DOWNSTREAM CG12096 INTRON CG34411
2R	11881044	2R_11881044_SNP [dm3] 2R_15993539_SNP [dm6]	A	T	3.947e^-4	1	UTR_3_PRIME CG8320 & 1 other DOWNSTREAM ATPCL
X	21250148	X_21250148_SNP [dm3] X_21379121_SNP [dm6]	A	G	3.954e^-4	1	INTRON slgA
3L	457012	3L_457012_INS [dm3] 3L_457012_INS [dm6]	A	AGAGGCGA	3.955e^-4	1	INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2L	11841923	2L_11841923_DEL [dm3] 2L_11841923_DEL [dm6]	TCTTCTTTGGCT...	T	3.957e^-4	1	UTR_3_PRIME CG44008 UPSTREAM CG14933 DOWNSTREAM CG31704 INTRON Pde1c
3L	13114146	3L_13114146_SNP [dm3] 3L_13121046_SNP [dm6]	T	A	3.968e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10351129	3L_10351129_DEL [dm3] 3L_10358029_DEL [dm6]	TCTCTCTCT	T	3.972e^-4	1	INTRON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4661204	3L_4661204_SNP [dm3] 3L_4661204_SNP [dm6]	A	G	3.973e^-4	1	INTRON axo
2L	9525813	2L_9525813_SNP [dm3] 2L_9525813_SNP [dm6]	A	G	3.978e^-4	1	INTRON Oatp30B	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	12460291	2R_12460291_SNP [dm3] 2R_16572786_SNP [dm6]	T	G	3.985e^-4	1	INTRON CG4927
2R	17473547	2R_17473547_SNP [dm3] 2R_21586042_SNP [dm6]	G	A	3.987e^-4	1	DOWNSTREAM CG30222 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12133756	2L_12133756_SNP [dm3] 2L_12133756_SNP [dm6]	A	G	3.991e^-4	1	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8471028	3L_8471028_SNP [dm3] 3L_8477928_SNP [dm6]	A	C	3.994e^-4	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2330923	2L_2330923_DEL [dm3] 2L_2330923_DEL [dm6]	ACTTGTATAAAG...	A	3.995e^-4	1	INTRON CG9967 & 1 other
3R	4404132	3R_4404132_SNP [dm3] 3R_8578410_SNP [dm6]	G	A	3.996e^-4	1	START_GAINED 5-HT2B UTR_5_PRIME 5-HT2B	TF binding site mE1_TFBS_cad
3L	3182139	3L_3182139_SNP [dm3] 3L_3182139_SNP [dm6]	G	C	3.997e^-4	1	SYNONYMOUS_CODING Girdin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6133234	2L_6133234_SNP [dm3] 2L_6133234_SNP [dm6]	C	G	3.998e^-4	1	DOWNSTREAM CR45719 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6133263	2L_6133263_SNP [dm3] 2L_6133263_SNP [dm6]	C	T	3.998e^-4	1	DOWNSTREAM CG9222 EXON CR45719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6133266	2L_6133266_SNP [dm3] 2L_6133266_SNP [dm6]	T	A	3.998e^-4	1	DOWNSTREAM CG9222 EXON CR45719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17327287	2L_17327287_SNP [dm3] 2L_17327287_SNP [dm6]	T	C	4.008e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	1587834	2L_1587834_DEL [dm3] 2L_1587834_DEL [dm6]	CCGAGTAGCCGAG...	C	4.008e^-4	1	UPSTREAM CG10869 INTRON haf
3L	5473205	3L_5473205_SNP [dm3] 3L_5480105_SNP [dm6]	C	T	4.013e^-4	1	SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4558946	3L_4558946_SNP [dm3] 3L_4558946_SNP [dm6]	A	G	4.027e^-4	1	INTRON CG42540
3L	10181187	3L_10181187_SNP [dm3] 3L_10188087_SNP [dm6]	T	C	4.050e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9863501	3L_9863501_SNP [dm3] 3L_9870401_SNP [dm6]	C	T	4.050e^-4	1	SYNONYMOUS_CODING CG8108	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7040713	2L_7040713_SNP [dm3] 2L_7040713_SNP [dm6]	C	G	4.056e^-4	1	SYNONYMOUS_CODING milt
3L	21876826	3L_21876826_SNP [dm3] 3L_21883726_SNP [dm6]	C	T	4.059e^-4	1	DOWNSTREAM CR43878 INTRON mub
3R	26180908	3R_26180908_SNP [dm3] 3R_30355186_SNP [dm6]	G	A	4.059e^-4	1	INTRON hdc
3L	10989256	3L_10989256_SNP [dm3] 3L_10996156_SNP [dm6]	C	A	4.062e^-4	1	INTRON klu
X	2598206	X_2598206_SNP [dm3] X_2704173_SNP [dm6]	G	A	4.066e^-4	1	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	18017974	2L_18017974_SNP [dm3] 2L_18017974_SNP [dm6]	T	A	4.076e^-4	1	INTRON rdo
2L	4170403	2L_4170403_DEL [dm3] 2L_4170403_DEL [dm6]	GCTGC	G	4.125e^-4	1	INTERGENIC
2R	14628636	2R_14628636_SNP [dm3] 2R_18741131_SNP [dm6]	T	A	4.148e^-4	1	INTRON Hs3st-A & 1 other
X	4772624	X_4772624_SNP [dm3] X_4878591_SNP [dm6]	G	C	4.151e^-4	1	INTRON CG42594
2R	7702038	2R_7702038_SNP [dm3] 2R_11814533_SNP [dm6]	A	G	4.157e^-4	1	DOWNSTREAM ths INTERGENIC
X	4772398	X_4772398_SNP [dm3] X_4878365_SNP [dm6]	T	A	4.158e^-4	1	INTRON CG42594
2L	11938451	2L_11938451_SNP [dm3] 2L_11938451_SNP [dm6]	C	T	4.158e^-4	1	SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
2L	11168684	2L_11168684_SNP [dm3] 2L_11168684_SNP [dm6]	C	T	4.167e^-4	1	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13171424	2L_13171424_SNP [dm3] 2L_13171424_SNP [dm6]	C	G	4.187e^-4	1	SYNONYMOUS_CODING Sfmbt
3L	10123695	3L_10123695_SNP [dm3] 3L_10130595_SNP [dm6]	A	C	4.196e^-4	1	INTRON dpr6
3R	6037238	3R_6037238_SNP [dm3] 3R_10211516_SNP [dm6]	A	G	4.197e^-4	1	INTRON Syn & 1 other
2R	13440486	2R_13440486_SNP [dm3] 2R_17552981_SNP [dm6]	A	C	4.203e^-4	1	SYNONYMOUS_CODING MESR4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12107226	3L_12107226_SNP [dm3] 3L_12114126_SNP [dm6]	T	A	4.206e^-4	1	INTERGENIC
3L	15599405	3L_15599405_SNP [dm3] 3L_15606305_SNP [dm6]	C	T	4.211e^-4	1	INTRON RhoGAP71E
3L	11179395	3L_11179395_DEL [dm3] 3L_11186295_DEL [dm6]	TAGA	T	4.216e^-4	1	INTRON GlcAT-P
2R	5839849	2R_5839849_SNP [dm3] 2R_9952344_SNP [dm6]	T	C	4.218e^-4	1	INTRON Mef2	TF binding site BDTNP1_TFBS_hb
3L	12165398	3L_12165398_SNP [dm3] 3L_12172298_SNP [dm6]	G	T	4.230e^-4	1	INTRON Rh7
2R	5332966	2R_5332966_SNP [dm3] 2R_9445461_SNP [dm6]	T	C	4.244e^-4	1	UPSTREAM ced-6 & 1 other EXON CR45321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7157035	3L_7157035_SNP [dm3] 3L_7163935_SNP [dm6]	T	G	4.247e^-4	1	INTRON Dscam2
2L	391321	2L_391321_INS [dm3] 2L_391321_INS [dm6]	T	TT	4.257e^-4	1	INTERGENIC
2L	17460726	2L_17460726_SNP [dm3] 2L_17460726_SNP [dm6]	C	T	4.257e^-4	1	UTR_3_PRIME BicD DOWNSTREAM BicD
X	15565185	X_15565185_SNP [dm3] X_15671152_SNP [dm6]	C	G	4.261e^-4	1	UPSTREAM CG15646 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	8929059	3L_8929059_SNP [dm3] 3L_8935959_SNP [dm6]	C	T	4.267e^-4	1	NON_SYNONYMOUS_CODING CG43783	TF binding site mE1_TFBS_cad
3L	8929060	3L_8929060_SNP [dm3] 3L_8935960_SNP [dm6]	A	G	4.267e^-4	1	SYNONYMOUS_CODING CG43783	TF binding site mE1_TFBS_cad
2L	16987653	2L_16987653_SNP [dm3] 2L_16987653_SNP [dm6]	T	A	4.281e^-4	1	INTRON beat-IIIb
3L	20338760	3L_20338760_DEL [dm3] 3L_20345660_DEL [dm6]	AGACTTGAGTCTGTATTCCC...	A	4.285e^-4	1	DOWNSTREAM Rbbp5 EXON CR45385
2R	18113521	2R_18113521_SNP [dm3] 2R_22226016_SNP [dm6]	C	T	4.288e^-4	1	NON_SYNONYMOUS_CODING Oatp58Dc
2R	18113525	2R_18113525_SNP [dm3] 2R_22226020_SNP [dm6]	G	A	4.288e^-4	1	SYNONYMOUS_CODING Oatp58Dc
3R	16804164	3R_16804164_SNP [dm3] 3R_20978442_SNP [dm6]	G	A	4.298e^-4	1	UTR_5_PRIME Calx INTRON Calx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15519253	X_15519253_SNP [dm3] X_15625220_SNP [dm6]	T	G	4.298e^-4	1	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13171337	2L_13171337_SNP [dm3] 2L_13171337_SNP [dm6]	A	G	4.299e^-4	1	SYNONYMOUS_CODING Sfmbt INTRON Sfmbt
3L	12761500	3L_12761500_SNP [dm3] 3L_12768400_SNP [dm6]	T	G	4.303e^-4	1	DOWNSTREAM Hip1 INTRON CG32113
3L	14584668	3L_14584668_SNP [dm3] 3L_14591568_SNP [dm6]	A	C	4.307e^-4	1	INTRON HGTX	TF binding site BDTNP1_TFBS_da
3L	8471277	3L_8471277_SNP [dm3] 3L_8478177_SNP [dm6]	G	T	4.322e^-4	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2330895	2L_2330895_SNP [dm3] 2L_2330895_SNP [dm6]	A	C	4.338e^-4	1	INTRON CG9967 & 1 other
2R	18307917	2R_18307917_SNP [dm3] 2R_22420412_SNP [dm6]	C	A	4.343e^-4	1	UPSTREAM rad50 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	20782276	3L_20782276_DEL [dm3] 3L_20789176_DEL [dm6]	AA	A	4.347e^-4	1	INTRON Six4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15519252	X_15519252_INS [dm3] X_15625219_INS [dm6]	A	AGTATTAGTT	4.352e^-4	1	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7732574	2R_7732574_SNP [dm3] 2R_11845069_SNP [dm6]	A	G	4.358e^-4	1	UTR_3_PRIME CG43190 UPSTREAM S2P & 1 other EXON CR44304	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10351125	3L_10351125_SNP [dm3] 3L_10358025_SNP [dm6]	T	C	4.364e^-4	1	INTRON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20914242	3L_20914242_SNP [dm3] 3L_20921142_SNP [dm6]	T	G	4.365e^-4	1	DOWNSTREAM CR43929 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	22050608	X_22050608_SNP [dm3] X_22648772_SNP [dm6]	T	G	4.372e^-4	1	INTERGENIC
2L	7162573	2L_7162573_SNP [dm3] 2L_7162573_SNP [dm6]	A	C	4.375e^-4	1	INTERGENIC
2R	11304358	2R_11304358_SNP [dm3] 2R_15416853_SNP [dm6]	A	T	4.377e^-4	1	INTRON CG43729
X	5972548	X_5972548_SNP [dm3] X_6078515_SNP [dm6]	A	T	4.377e^-4	1	UPSTREAM CG4666 DOWNSTREAM CG4660 INTERGENIC
3L	8467301	3L_8467301_SNP [dm3] 3L_8474201_SNP [dm6]	G	A	4.379e^-4	1	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18651048	2R_18651048_SNP [dm3] 2R_22763543_SNP [dm6]	G	A	4.383e^-4	1	UPSTREAM CG13527 INTRON CG42260
2L	18187485	2L_18187485_SNP [dm3] 2L_18187485_SNP [dm6]	G	A	4.400e^-4	1	INTRON CG42750
3L	13410025	3L_13410025_SNP [dm3] 3L_13416925_SNP [dm6]	G	A	4.406e^-4	1	UTR_3_PRIME CG32121 DOWNSTREAM flr
3L	8923037	3L_8923037_DEL [dm3] 3L_8929937_DEL [dm6]	CCATCCCTT	C	4.431e^-4	1	INTRON Tsp66E
3R	17719883	3R_17719883_SNP [dm3] 3R_21894161_SNP [dm6]	A	T	4.432e^-4	1	INTRON CG6678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1713418	2L_1713418_SNP [dm3] 2L_1713418_SNP [dm6]	C	A	4.444e^-4	1	SYNONYMOUS_CODING frtz	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12787196	3L_12787196_SNP [dm3] 3L_12794096_SNP [dm6]	C	A	4.446e^-4	1	SYNONYMOUS_CODING CG42709 INTRON Atg1	TF binding site mE1_TFBS_inv
2R	6344157	2R_6344157_SNP [dm3] 2R_10456652_SNP [dm6]	G	T	4.453e^-4	1	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
2R	16141063	2R_16141063_SNP [dm3] 2R_20253558_SNP [dm6]	A	G	4.454e^-4	1	INTRON CG9864
2R	12138123	2R_12138123_DEL [dm3] 2R_16250618_DEL [dm6]	TT	T	4.458e^-4	1	UPSTREAM CngA INTRON CngA
3L	5572330	3L_5572330_SNP [dm3] 3L_5579230_SNP [dm6]	C	T	4.470e^-4	1	INTERGENIC
2R	13949187	2R_13949187_SNP [dm3] 2R_18061682_SNP [dm6]	T	C	4.475e^-4	1	UPSTREAM CG34386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	20907441	3L_20907441_INS [dm3] 3L_20914341_INS [dm6]	C	CT	4.478e^-4	1	UPSTREAM CR43930 INTERGENIC
2L	13171914	2L_13171914_SNP [dm3] 2L_13171914_SNP [dm6]	G	T	4.531e^-4	1	SYNONYMOUS_CODING Sfmbt
2R	18863035	2R_18863035_SNP [dm3] 2R_22975512_SNP [dm6]	T	C	4.531e^-4	1	INTERGENIC
2L	16082613	2L_16082613_SNP [dm3] 2L_16082613_SNP [dm6]	A	G	4.534e^-4	1	DOWNSTREAM beat-Ia INTERGENIC
3L	1606939	3L_1606939_SNP [dm3] 3L_1606939_SNP [dm6]	T	C	4.537e^-4	1	INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15216447	3L_15216447_SNP [dm3] 3L_15223347_SNP [dm6]	T	A	4.545e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18317059	2R_18317059_SNP [dm3] 2R_22429554_SNP [dm6]	T	G	4.547e^-4	1	SYNONYMOUS_CODING ppk12
2L	10356660	2L_10356660_SNP [dm3] 2L_10356660_SNP [dm6]	A	G	4.557e^-4	1	UPSTREAM CG5045 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	12042561	X_12042561_SNP [dm3] X_12148528_SNP [dm6]	C	T	4.562e^-4	1	INTRON Ten-a
3L	11103297	3L_11103297_SNP [dm3] 3L_11110197_SNP [dm6]	G	A	4.566e^-4	1	SYNONYMOUS_CODING CG7638 UPSTREAM CG34012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	9644167	2L_9644167_SNP [dm3] 2L_9644167_SNP [dm6]	C	T	4.569e^-4	1	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25366026	3R_25366026_SNP [dm3] 3R_29540304_SNP [dm6]	T	C	4.573e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15148226	2R_15148226_SNP [dm3] 2R_19260721_SNP [dm6]	T	G	4.582e^-4	1	SYNONYMOUS_CODING CG7229 UPSTREAM CR44432	TF binding site mE1_TFBS_sens
2L	9600764	2L_9600764_SNP [dm3] 2L_9600764_SNP [dm6]	G	T	4.583e^-4	1	NON_SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19498798	3R_19498798_SNP [dm3] 3R_23673076_SNP [dm6]	G	C	4.585e^-4	1	INTERGENIC
3L	5500035	3L_5500035_SNP [dm3] 3L_5506935_SNP [dm6]	A	C	4.592e^-4	1	INTRON CG34342
2L	7087606	2L_7087606_SNP [dm3] 2L_7087606_SNP [dm6]	T	C	4.596e^-4	1	INTERGENIC
3R	13922111	3R_13922111_SNP [dm3] 3R_18096389_SNP [dm6]	G	A	4.597e^-4	1	SYNONYMOUS_CODING sr
2L	13154343	2L_13154343_SNP [dm3] 2L_13154343_SNP [dm6]	A	T	4.598e^-4	1	INTERGENIC
3L	13114167	3L_13114167_SNP [dm3] 3L_13121067_SNP [dm6]	T	A	4.598e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	10044863	2L_10044863_SNP [dm3] 2L_10044863_SNP [dm6]	G	A	4.604e^-4	1	INTERGENIC
2R	10029303	2R_10029303_SNP [dm3] 2R_14141798_SNP [dm6]	C	G	4.607e^-4	1	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2171534	3L_2171534_SNP [dm3] 3L_2171534_SNP [dm6]	G	A	4.610e^-4	1	UPSTREAM CG5704 DOWNSTREAM CR15821 INTERGENIC
3L	7043318	3L_7043318_SNP [dm3] 3L_7050218_SNP [dm6]	C	T	4.620e^-4	1	INTRON Mp
2L	17802815	2L_17802815_SNP [dm3] 2L_17802815_SNP [dm6]	C	G	4.627e^-4	1	INTRON CadN2
X	9200094	X_9200094_DEL [dm3] X_9306061_DEL [dm6]	CT	G	4.628e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19607433	X_19607433_INS [dm3] X_19713400_INS [dm6]	G	GAAGGAG	4.662e^-4	1	UPSTREAM meso18E EXON CR44889	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1953411	2L_1953411_SNP [dm3] 2L_1953411_SNP [dm6]	A	T	4.663e^-4	1	INTRON erm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	9815091	3R_9815091_SNP [dm3] 3R_13989369_SNP [dm6]	A	C	4.664e^-4	1	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	12618555	X_12618555_SNP [dm3] X_12724522_SNP [dm6]	G	A	4.669e^-4	1	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1589596	2L_1589596_SNP [dm3] 2L_1589596_SNP [dm6]	C	A	4.672e^-4	1	INTRON haf
X	8065496	X_8065496_SNP [dm3] X_8171463_SNP [dm6]	T	C	4.678e^-4	1	UTR_3_PRIME slpr
2L	17076983	2L_17076983_SNP [dm3] 2L_17076983_SNP [dm6]	A	T	4.678e^-4	1	INTERGENIC
2L	5156321	2L_5156321_SNP [dm3] 2L_5156321_SNP [dm6]	T	C	4.683e^-4	1	INTRON Msp300
X	21249679	X_21249679_SNP [dm3] X_21378652_SNP [dm6]	G	A	4.685e^-4	1	INTRON slgA
2L	7490597	2L_7490597_SNP [dm3] 2L_7490597_SNP [dm6]	C	G	4.693e^-4	1	INTRON Ziz
X	2598225	X_2598225_SNP [dm3] X_2704192_SNP [dm6]	A	T	4.694e^-4	1	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	5338248	2R_5338248_INS [dm3] 2R_9450743_INS [dm6]	T	TTGTGTGTGTGT...	4.706e^-4	1	INTRON Camta
2L	18204173	2L_18204173_SNP [dm3] 2L_18204173_SNP [dm6]	C	T	4.721e^-4	1	NON_SYNONYMOUS_CODING CG42750	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25646099	3R_25646099_SNP [dm3] 3R_29820377_SNP [dm6]	A	G	4.723e^-4	1	INTRON neo
2R	17048936	2R_17048936_SNP [dm3] 2R_21161431_SNP [dm6]	G	A	4.726e^-4	1	UPSTREAM tRNA:CR30208 & 3 others DOWNSTREAM CG4266 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	13467568	3R_13467568_DEL [dm3] 3R_17641846_DEL [dm6]	AA	A	4.739e^-4	1	INTRON CG43175
2R	19832312	2R_19832312_SNP [dm3] 2R_23944789_SNP [dm6]	C	T	4.742e^-4	1	INTRON Galphas	TF binding site mE1_TFBS_sens
2R	18188629	2R_18188629_SNP [dm3] 2R_22301124_SNP [dm6]	G	A	4.746e^-4	1	INTRON wdp	TF binding site mE1_TFBS_cad
X	15379643	X_15379643_SNP [dm3] X_15485610_SNP [dm6]	G	A	4.747e^-4	1	SYNONYMOUS_CODING CG6340 UTR_3_PRIME CG6340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18005137	2R_18005137_SNP [dm3] 2R_22117632_SNP [dm6]	A	C	4.756e^-4	1	INTRON Vrp1
X	6355173	X_6355173_DEL [dm3] X_6461140_DEL [dm6]	TT	T	4.773e^-4	1	INTRON CG42340
X	9787350	X_9787350_SNP [dm3] X_9893317_SNP [dm6]	G	T	4.785e^-4	1	INTRON CG15249
2L	1612492	2L_1612492_SNP [dm3] 2L_1612492_SNP [dm6]	T	G	4.802e^-4	1	UTR_3_PRIME CG14352 & 1 other DOWNSTREAM RFeSP
2L	1717494	2L_1717494_SNP [dm3] 2L_1717494_SNP [dm6]	C	G	4.802e^-4	1	INTRON Rim2
3R	15764569	3R_15764569_SNP [dm3] 3R_19938847_SNP [dm6]	T	C	4.815e^-4	1	INTRON Hs6st
3L	5496677	3L_5496677_SNP [dm3] 3L_5503577_SNP [dm6]	C	T	4.830e^-4	1	UTR_3_PRIME CG34342
2L	10721708	2L_10721708_SNP [dm3] 2L_10721708_SNP [dm6]	T	A	4.837e^-4	1	INTERGENIC
3R	26680265	3R_26680265_SNP [dm3] 3R_30854543_SNP [dm6]	A	T	4.844e^-4	1	DOWNSTREAM tll INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1335438	2L_1335438_DEL [dm3] 2L_1335438_DEL [dm6]	CTGGAGTTCGCAGCTAA...	C	4.845e^-4	1	UTR_3_PRIME CG5440 DOWNSTREAM CG5440
2R	10610526	2R_10610526_SNP [dm3] 2R_14723021_SNP [dm6]	G	A	4.853e^-4	1	INTERGENIC
3L	18304661	3L_18304661_SNP [dm3] 3L_18311561_SNP [dm6]	T	C	4.868e^-4	1	INTERGENIC
X	12206183	X_12206183_SNP [dm3] X_12312150_SNP [dm6]	A	C	4.868e^-4	1	INTRON Ten-a
2L	7041693	2L_7041693_SNP [dm3] 2L_7041693_SNP [dm6]	T	G	4.881e^-4	1	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18213303	2L_18213303_DEL [dm3] 2L_18213303_DEL [dm6]	AGCAAG	A	4.885e^-4	1	INTRON CG42750
3L	12887698	3L_12887698_SNP [dm3] 3L_12894598_SNP [dm6]	C	T	4.886e^-4	1	UTR_3_PRIME CG14118	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	13226026	2L_13226026_SNP [dm3] 2L_13226026_SNP [dm6]	G	A	4.891e^-4	1	UPSTREAM CG15480 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	20930897	3L_20930897_SNP [dm3] 3L_20937797_SNP [dm6]	T	C	4.896e^-4	1	INTRON fng
X	4769526	X_4769526_SNP [dm3] X_4875493_SNP [dm6]	A	G	4.898e^-4	1	UPSTREAM CG12681 INTRON CG42594
3R	15761515	3R_15761515_SNP [dm3] 3R_19935793_SNP [dm6]	T	G	4.899e^-4	1	UPSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	6024620	3L_6024620_SNP [dm3] 3L_6031520_SNP [dm6]	A	G	4.906e^-4	1	INTERGENIC
X	14254847	X_14254847_SNP [dm3] X_14360814_SNP [dm6]	A	T	4.923e^-4	1	INTRON dpr8
3R	12415859	3R_12415859_SNP [dm3] 3R_16590137_SNP [dm6]	C	T	4.925e^-4	1	INTERGENIC
2L	7267421	2L_7267421_DEL [dm3] 2L_7267421_DEL [dm6]	AGCTCCA	A	4.929e^-4	1	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10334606	3L_10334606_SNP [dm3] 3L_10341506_SNP [dm6]	G	A	4.936e^-4	1	INTERGENIC
3L	10104516	3L_10104516_SNP [dm3] 3L_10111416_SNP [dm6]	T	A	4.937e^-4	1	INTRON dpr6
2L	10777298	2L_10777298_SNP [dm3] 2L_10777298_SNP [dm6]	T	G	4.937e^-4	1	INTRON CG31869
3R	12395791	3R_12395791_SNP [dm3] 3R_16570069_SNP [dm6]	A	T	4.937e^-4	1	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7138888	2L_7138888_SNP [dm3] 2L_7138888_SNP [dm6]	A	G	4.945e^-4	1	INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	17796108	2L_17796108_SNP [dm3] 2L_17796108_SNP [dm6]	A	G	4.948e^-4	1	INTRON CadN2	TF binding site mE1_TFBS_HSA
X	3240246	X_3240246_SNP [dm3] X_3346213_SNP [dm6]	C	G	4.949e^-4	1	INTRON CR44886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18307973	2R_18307973_SNP [dm3] 2R_22420468_SNP [dm6]	C	T	4.951e^-4	1	UPSTREAM rad50 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	837563	2R_837563_INS [dm3] 2R_4950058_INS [dm6]	A	ATGAGCAACGAAAAA...	4.982e^-4	1	INTRON Ir41a
X	2598228	X_2598228_INS [dm3] X_2704195_INS [dm6]	A	AGAA	4.986e^-4	1	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	18638662	3L_18638662_SNP [dm3] 3L_18645562_SNP [dm6]	A	T	4.996e^-4	1	INTRON MYPT-75D
2R	3930398	2R_3930398_SNP [dm3] 2R_8042893_SNP [dm6]	A	G	4.998e^-4	1	DOWNSTREAM Optix INTERGENIC	TF binding site mE1_TFBS_cnc
X	17183766	X_17183766_SNP [dm3] X_17289733_SNP [dm6]	T	C	5.017e^-4	1	INTRON CG5445 & 1 other
2L	1385479	2L_1385479_SNP [dm3] 2L_1385479_SNP [dm6]	T	G	5.020e^-4	1	INTRON lea
2L	18253034	2L_18253034_SNP [dm3] 2L_18253034_SNP [dm6]	G	T	5.028e^-4	1	DOWNSTREAM CG43406 INTRON CG42750
3L	14541531	3L_14541531_SNP [dm3] 3L_14548431_SNP [dm6]	G	A	5.033e^-4	1	INTRON CG9238	TF binding site BDTNP1_TFBS_da
2L	13227312	2L_13227312_DEL [dm3] 2L_13227312_DEL [dm6]	TTGT	T	5.034e^-4	1	UPSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3351066	3L_3351066_INS [dm3] 3L_3351066_INS [dm6]	C	CC	5.037e^-4	1	INTRON kst
2L	1930713	2L_1930713_SNP [dm3] 2L_1930713_SNP [dm6]	T	C	5.073e^-4	1	INTRON CG7337
2R	18183940	2R_18183940_SNP [dm3] 2R_22296435_SNP [dm6]	A	G	5.084e^-4	1	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5483269	X_5483269_SNP [dm3] X_5589236_SNP [dm6]	C	T	5.098e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15768636	2R_15768636_SNP [dm3] 2R_19881131_SNP [dm6]	C	A	5.103e^-4	1	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	15768802	2R_15768802_SNP [dm3] 2R_19881297_SNP [dm6]	T	G	5.117e^-4	1	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	5238733	X_5238733_SNP [dm3] X_5344700_SNP [dm6]	T	A	5.124e^-4	1	INTRON SK
2R	18293036	2R_18293036_SNP [dm3] 2R_22405531_SNP [dm6]	T	C	5.127e^-4	1	INTRON CG6044
2R	18298561	2R_18298561_SNP [dm3] 2R_22411056_SNP [dm6]	G	T	5.127e^-4	1	SPLICE_SITE_REGION qkr58E-3 UPSTREAM Mes4 INTRON qkr58E-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18299094	2R_18299094_SNP [dm3] 2R_22411589_SNP [dm6]	T	C	5.127e^-4	1	UPSTREAM Mes4 & 1 other DOWNSTREAM qkr58E-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
2R	18299617	2R_18299617_SNP [dm3] 2R_22412112_SNP [dm6]	G	C	5.127e^-4	1	NON_SYNONYMOUS_CODING Mes4 UPSTREAM qkr58E-3 DOWNSTREAM qkr58E-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18306003	2R_18306003_SNP [dm3] 2R_22418498_SNP [dm6]	C	T	5.127e^-4	1	UTR_3_PRIME qkr58E-2 DOWNSTREAM mRpS29
2R	18307758	2R_18307758_SNP [dm3] 2R_22420253_SNP [dm6]	G	A	5.127e^-4	1	NON_SYNONYMOUS_CODING mRpS29 UPSTREAM rad50	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12861629	3L_12861629_SNP [dm3] 3L_12868529_SNP [dm6]	G	A	5.142e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	19068481	2R_19068481_SNP [dm3] 2R_23180958_SNP [dm6]	C	A	5.143e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9925903	2L_9925903_SNP [dm3] 2L_9925903_SNP [dm6]	A	C	5.145e^-4	1	INTRON CG42366
2R	6720097	2R_6720097_SNP [dm3] 2R_10832592_SNP [dm6]	C	G	5.149e^-4	1	INTRON CG12344
3L	7946218	3L_7946218_SNP [dm3] 3L_7953118_SNP [dm6]	C	T	5.152e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11438196	3L_11438196_SNP [dm3] 3L_11445096_SNP [dm6]	A	C	5.160e^-4	1	UPSTREAM CG7557 EXON CR44549
3L	12217093	3L_12217093_SNP [dm3] 3L_12223993_SNP [dm6]	A	C	5.166e^-4	1	INTRON app
3L	10663723	3L_10663723_SNP [dm3] 3L_10670623_SNP [dm6]	G	A	5.167e^-4	1	INTRON simj	TF binding site BDTNP1_TFBS_dl
X	2753652	X_2753652_SNP [dm3] X_2859619_SNP [dm6]	G	A	5.181e^-4	1	INTRON kirre
3L	21859930	3L_21859930_SNP [dm3] 3L_21866830_SNP [dm6]	T	G	5.202e^-4	1	INTRON mub	TF binding site BDTNP1_TFBS_twi
2R	16478189	2R_16478189_SNP [dm3] 2R_20590684_SNP [dm6]	T	A	5.211e^-4	1	INTRON bl	TF binding site BDTNP1_TFBS_twi
3L	8925710	3L_8925710_SNP [dm3] 3L_8932610_SNP [dm6]	A	G	5.215e^-4	1	UTR_3_PRIME CG43783 DOWNSTREAM CG43783 & 1 other
3L	13114115	3L_13114115_SNP [dm3] 3L_13121015_SNP [dm6]	A	G	5.222e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	11049770	3L_11049770_SNP [dm3] 3L_11056670_SNP [dm6]	T	C	5.222e^-4	1	UPSTREAM CG7888 INTRON CG7888
3L	13071101	3L_13071101_SNP [dm3] 3L_13078001_SNP [dm6]	A	T	5.223e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	2314712	2L_2314712_SNP [dm3] 2L_2314712_SNP [dm6]	A	G	5.227e^-4	1	INTRON CG9967 & 1 other
2R	17161599	2R_17161599_SNP [dm3] 2R_21274094_SNP [dm6]	A	T	5.238e^-4	1	INTRON Rgk3
3L	3144756	3L_3144756_SNP [dm3] 3L_3144756_SNP [dm6]	C	A	5.245e^-4	1	NON_SYNONYMOUS_CODING CG1291 DOWNSTREAM CG12082	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	453737	3L_453737_INS [dm3] 3L_453737_INS [dm6]	T	TT	5.250e^-4	1	INTRON klar
3L	18694441	3L_18694441_SNP [dm3] 3L_18701341_SNP [dm6]	G	A	5.257e^-4	1	INTERGENIC
2L	3925451	2L_3925451_INS [dm3] 2L_3925451_INS [dm6]	T	TT	5.262e^-4	1	INTRON fred
3L	7156728	3L_7156728_SNP [dm3] 3L_7163628_SNP [dm6]	A	G	5.265e^-4	1	INTRON Dscam2
2R	6653448	2R_6653448_SNP [dm3] 2R_10765943_SNP [dm6]	G	A	5.274e^-4	1	INTRON CG33144
2L	10164565	2L_10164565_INS [dm3] 2L_10164565_INS [dm6]	G	GG	5.275e^-4	1	INTRON CG44153
3L	12761598	3L_12761598_SNP [dm3] 3L_12768498_SNP [dm6]	C	T	5.280e^-4	1	UTR_3_PRIME Hip1 DOWNSTREAM Hip1 INTRON CG32113
3L	4819084	3L_4819084_SNP [dm3] 3L_4819084_SNP [dm6]	A	T	5.288e^-4	1	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_sens
2R	13625455	2R_13625455_SNP [dm3] 2R_17737950_SNP [dm6]	T	A	5.304e^-4	1	NON_SYNONYMOUS_CODING CG6401 UPSTREAM CG6406
X	17014839	X_17014839_DEL [dm3] X_17120806_DEL [dm6]	ATATATTTTTG...	A	5.304e^-4	1	INTRON CG5004
3L	5473554	3L_5473554_SNP [dm3] 3L_5480454_SNP [dm6]	G	C	5.311e^-4	1	NON_SYNONYMOUS_CODING CG4835	TF binding site mE1_TFBS_inv
3R	10822534	3R_10822534_SNP [dm3] 3R_14996812_SNP [dm6]	A	T	5.321e^-4	1	INTERGENIC
X	17518875	X_17518875_SNP [dm3] X_17624842_SNP [dm6]	C	A	5.331e^-4	1	UTR_3_PRIME stas INTRON stas	TF binding site BDTNP1_TFBS_dl
X	11350503	X_11350503_INS [dm3] X_11456470_INS [dm6]	A	ATGATGA	5.337e^-4	1
2R	20235425	2R_20235425_SNP [dm3] 2R_24347902_SNP [dm6]	C	G	5.344e^-4	1	INTRON bs
2R	18581812	2R_18581812_SNP [dm3] 2R_22694307_SNP [dm6]	T	C	5.350e^-4	1	UTR_3_PRIME robo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3539787	3L_3539787_INS [dm3] 3L_3539787_INS [dm6]	G	GG	5.352e^-4	1	INTRON Eip63E
X	10815663	X_10815663_SNP [dm3] X_10921630_SNP [dm6]	G	A	5.353e^-4	1	UTR_3_PRIME CG43901 DOWNSTREAM CG43901	TF binding site BDTNP1_TFBS_dl
2R	4226168	2R_4226168_SNP [dm3] 2R_8338663_SNP [dm6]	A	T	5.358e^-4	1	INTRON pdm3
3R	14532154	3R_14532154_SNP [dm3] 3R_18706432_SNP [dm6]	C	T	5.360e^-4	1	INTRON VAChT & 1 other
X	8065792	X_8065792_SNP [dm3] X_8171759_SNP [dm6]	A	G	5.363e^-4	1	SYNONYMOUS_CODING slpr	TF binding site mE1_TFBS_chinmo
X	7632892	X_7632892_SNP [dm3] X_7738859_SNP [dm6]	T	C	5.363e^-4	1	INTRON Tom40	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1791340	3L_1791340_SNP [dm3] 3L_1791340_SNP [dm6]	C	T	5.368e^-4	1	SYNONYMOUS_CODING dlt INTRON alpha-Spec	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17961666	2R_17961666_SNP [dm3] 2R_22074161_SNP [dm6]	G	A	5.369e^-4	1	SYNONYMOUS_CODING CG2921 UPSTREAM CG11474	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5280528	2L_5280528_SNP [dm3] 2L_5280528_SNP [dm6]	A	C	5.378e^-4	1	SYNONYMOUS_CODING Bub1	TF binding site mE1_TFBS_cad
3L	8055451	3L_8055451_SNP [dm3] 3L_8062351_SNP [dm6]	G	A	5.378e^-4	1	INTERGENIC
2L	1717493	2L_1717493_SNP [dm3] 2L_1717493_SNP [dm6]	A	T	5.385e^-4	1	INTRON Rim2
3L	15647548	3L_15647548_SNP [dm3] 3L_15654448_SNP [dm6]	A	C	5.393e^-4	1	DOWNSTREAM Eig71Ee INTERGENIC
4	715582	4_715582_MNP [dm3] 4_694956_MNP [dm6]	TTTG	CAGC	5.394e^-4	1	INTRON myo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5194410	3R_5194410_SNP [dm3] 3R_9368688_SNP [dm6]	G	C	5.396e^-4	1	DOWNSTREAM CG8129 INTRON FER
3R	15762946	3R_15762946_SNP [dm3] 3R_19937224_SNP [dm6]	G	A	5.397e^-4	1	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4790150	2L_4790150_SNP [dm3] 2L_4790150_SNP [dm6]	C	G	5.404e^-4	1	INTRON CG15630
3R	19401516	3R_19401516_SNP [dm3] 3R_23575794_SNP [dm6]	A	G	5.406e^-4	1	INTRON beat-IV
3R	4992367	3R_4992367_SNP [dm3] 3R_9166645_SNP [dm6]	A	T	5.407e^-4	1	INTRON pum
2R	14091783	2R_14091783_SNP [dm3] 2R_18204278_SNP [dm6]	A	C	5.409e^-4	1	INTERGENIC
2R	10997171	2R_10997171_SNP [dm3] 2R_15109666_SNP [dm6]	G	C	5.414e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11073657	2R_11073657_SNP [dm3] 2R_15186152_SNP [dm6]	C	T	5.419e^-4	1	DOWNSTREAM CG43068 INTRON igl
3L	5473561	3L_5473561_INS [dm3] 3L_5480461_INS [dm6]	C	CCACTGAAAC	5.420e^-4	1		TF binding site mE1_TFBS_inv
3L	16165305	3L_16165305_SNP [dm3] 3L_16172205_SNP [dm6]	T	C	5.431e^-4	1	UPSTREAM CG33795 INTERGENIC
2R	17063198	2R_17063198_SNP [dm3] 2R_21175693_SNP [dm6]	G	T	5.435e^-4	1	INTRON Pu
2L	1876848	2L_1876848_SNP [dm3] 2L_1876848_SNP [dm6]	T	C	5.439e^-4	1	INTRON CG31663
3L	12162673	3L_12162673_SNP [dm3] 3L_12169573_SNP [dm6]	A	G	5.454e^-4	1	INTRON Rh7
3R	12733568	3R_12733568_SNP [dm3] 3R_16907846_SNP [dm6]	A	C	5.464e^-4	1	INTRON iab-8	TF binding site mE1_TFBS_HSA
3L	11096713	3L_11096713_SNP [dm3] 3L_11103613_SNP [dm6]	C	T	5.466e^-4	1	SYNONYMOUS_CODING CG32071 UPSTREAM Elo68alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17251575	2L_17251575_SNP [dm3] 2L_17251575_SNP [dm6]	G	T	5.478e^-4	1	UTR_5_PRIME beat-IIIc
3R	26690031	3R_26690031_SNP [dm3] 3R_30864309_SNP [dm6]	C	T	5.482e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20337853	3L_20337853_DEL [dm3] 3L_20344753_DEL [dm6]	CC	C	5.487e^-4	1	UPSTREAM CR45385 DOWNSTREAM Spn77Bc & 1 other INTERGENIC
3L	11410657	3L_11410657_SNP [dm3] 3L_11417557_SNP [dm6]	T	A	5.497e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18640131	3L_18640131_SNP [dm3] 3L_18647031_SNP [dm6]	G	C	5.502e^-4	1	INTRON MYPT-75D
3L	8707949	3L_8707949_SNP [dm3] 3L_8714849_SNP [dm6]	T	G	5.507e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	6797434	2R_6797434_SNP [dm3] 2R_10909929_SNP [dm6]	C	A	5.520e^-4	1	SYNONYMOUS_CODING Obp47a
2L	1930600	2L_1930600_SNP [dm3] 2L_1930600_SNP [dm6]	C	T	5.524e^-4	1	INTRON CG7337
2L	17798351	2L_17798351_SNP [dm3] 2L_17798351_SNP [dm6]	A	G	5.525e^-4	1	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
3L	11105065	3L_11105065_SNP [dm3] 3L_11111965_SNP [dm6]	C	T	5.526e^-4	1	UTR_3_PRIME CG7638 DOWNSTREAM Sod
2L	14483957	2L_14483957_SNP [dm3] 2L_14483957_SNP [dm6]	A	T	5.533e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18475393	2R_18475393_SNP [dm3] 2R_22587888_SNP [dm6]	G	A	5.533e^-4	1	INTRON dnr1
2R	15439626	2R_15439626_SNP [dm3] 2R_19552121_SNP [dm6]	T	C	5.541e^-4	1	INTRON sm & 1 other
2R	18981235	2R_18981235_SNP [dm3] 2R_23093712_SNP [dm6]	G	A	5.546e^-4	1	SPLICE_SITE_REGION CG9876 SYNONYMOUS_CODING CG9876
3R	17719921	3R_17719921_SNP [dm3] 3R_21894199_SNP [dm6]	G	A	5.552e^-4	1	INTRON CG6678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4059686	2L_4059686_SNP [dm3] 2L_4059686_SNP [dm6]	A	G	5.553e^-4	1	INTRON ed
2R	4542628	2R_4542628_SNP [dm3] 2R_8655123_SNP [dm6]	A	C	5.555e^-4	1	INTRON ptc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5995598	3R_5995598_SNP [dm3] 3R_10169876_SNP [dm6]	G	A	5.556e^-4	1	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	12328220	3L_12328220_SNP [dm3] 3L_12335120_SNP [dm6]	A	G	5.566e^-4	1	INTRON CG32105	TF binding site mE1_TFBS_chinmo
X	16444646	X_16444646_SNP [dm3] X_16550613_SNP [dm6]	T	A	5.568e^-4	1	INTRON Arp2	TF binding site mE1_TFBS_sens
2R	15329397	2R_15329397_SNP [dm3] 2R_19441892_SNP [dm6]	G	A	5.585e^-4	1	UTR_3_PRIME Spt5 UPSTREAM RpL11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	18392471	X_18392471_SNP [dm3] X_18498438_SNP [dm6]	C	A	5.585e^-4	1	INTRON GalNAc-T2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6510992	3L_6510992_SNP [dm3] 3L_6517892_SNP [dm6]	T	C	5.592e^-4	1	INTRON sfl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12046784	2L_12046784_SNP [dm3] 2L_12046784_SNP [dm6]	T	A	5.599e^-4	1	UTR_3_PRIME Plzf UPSTREAM CG6770 DOWNSTREAM Plzf & 1 other	TF binding site mE1_TFBS_HSA
2L	17797240	2L_17797240_SNP [dm3] 2L_17797240_SNP [dm6]	C	A	5.604e^-4	1	INTRON CadN2
X	12262487	X_12262487_SNP [dm3] X_12368454_SNP [dm6]	C	T	5.607e^-4	1	INTERGENIC
2L	18017652	2L_18017652_SNP [dm3] 2L_18017652_SNP [dm6]	C	A	5.621e^-4	1	INTRON rdo
3L	14267405	3L_14267405_SNP [dm3] 3L_14274305_SNP [dm6]	T	C	5.624e^-4	1	UPSTREAM fz INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	14667333	3R_14667333_DEL [dm3] 3R_18841611_DEL [dm6]	GAGGAGCTGG	G	5.633e^-4	1	INTRON CG18208
X	3486452	X_3486452_INS [dm3] X_3592419_INS [dm6]	T	TGT	5.684e^-4	1	INTRON AstA-R1
2L	13181589	2L_13181589_SNP [dm3] 2L_13181589_SNP [dm6]	C	T	5.692e^-4	1	SYNONYMOUS_CODING CG31849 INTRON CG5287	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6647127	3R_6647127_SNP [dm3] 3R_10821405_SNP [dm6]	T	C	5.694e^-4	1	INTERGENIC
X	12041668	X_12041668_SNP [dm3] X_12147635_SNP [dm6]	C	T	5.698e^-4	1	INTRON Ten-a
2L	4155310	2L_4155310_SNP [dm3] 2L_4155310_SNP [dm6]	A	G	5.701e^-4	1	INTERGENIC
3L	2509836	3L_2509836_SNP [dm3] 3L_2509836_SNP [dm6]	C	T	5.702e^-4	1	SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo
3L	5705234	3L_5705234_SNP [dm3] 3L_5712134_SNP [dm6]	C	T	5.707e^-4	1	INTRON sif	TF binding site mE1_TFBS_chinmo
3R	16026059	3R_16026059_SNP [dm3] 3R_20200337_SNP [dm6]	C	A	5.710e^-4	1	INTERGENIC
2R	9277033	2R_9277033_SNP [dm3] 2R_13389528_SNP [dm6]	C	T	5.727e^-4	1	UTR_3_PRIME CG43691 DOWNSTREAM CG43691
3L	15123122	3L_15123122_SNP [dm3] 3L_15130022_SNP [dm6]	A	T	5.728e^-4	1	NON_SYNONYMOUS_CODING CG13457	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22045614	X_22045614_SNP [dm3] X_22643778_SNP [dm6]	A	T	5.730e^-4	1	INTERGENIC
2L	16583254	2L_16583254_SNP [dm3] 2L_16583254_SNP [dm6]	A	T	5.738e^-4	1	INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	10238610	3R_10238610_SNP [dm3] 3R_14412888_SNP [dm6]	T	C	5.747e^-4	1	INTRON cv-c
2L	17327350	2L_17327350_SNP [dm3] 2L_17327350_SNP [dm6]	A	G	5.761e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2R	20322847	2R_20322847_SNP [dm3] 2R_24435324_SNP [dm6]	T	C	5.765e^-4	1	INTERGENIC
2L	9841375	2L_9841375_SNP [dm3] 2L_9841375_SNP [dm6]	C	T	5.767e^-4	1	INTRON nAChRalpha6

By genomic position
Variant impact
Gene name

Sample.size Experience 5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results