DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.462e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.07545
In_3R_P	0.03591

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	5.9724	0.0505
In_2R_NS	7.0725	0.0291
In_3R_P	6.8247	0.033

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2475 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12710777	3L_12710777_SNP [dm3] 3L_12717677_SNP [dm6]	G	T	3.044e^-7	0.285	INTERGENIC
3L	12710782	3L_12710782_SNP [dm3] 3L_12717682_SNP [dm6]	G	A	3.044e^-7	0.285	INTERGENIC
2R	10532453	2R_10532453_SNP [dm3] 2R_14644948_SNP [dm6]	A	G	7.894e^-7	0.409	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10532472	2R_10532472_INS [dm3] 2R_14644967_INS [dm6]	A	AAA	9.648e^-7	0.409	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8390049	2L_8390049_SNP [dm3] 2L_8390049_SNP [dm6]	C	T	2.250e^-6	0.409	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3457477	2L_3457477_SNP [dm3] 2L_3457477_SNP [dm6]	C	T	2.256e^-6	0.409	SYNONYMOUS_CODING Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4717169	2L_4717169_INS [dm3] 2L_4717169_INS [dm6]	TT	AGAC	2.463e^-6	0.409	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1131908	3L_1131908_SNP [dm3] 3L_1131908_SNP [dm6]	T	C	2.597e^-6	0.409	INTERGENIC	regulatory region REDfly_CRMs
2R	9632088	2R_9632088_INS [dm3] 2R_13744583_INS [dm6]	T	TT	2.665e^-6	0.409	INTRON fas
2L	8390046	2L_8390046_SNP [dm3] 2L_8390046_SNP [dm6]	G	A	2.669e^-6	0.409	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi
2L	5712219	2L_5712219_SNP [dm3] 2L_5712219_SNP [dm6]	C	T	2.733e^-6	0.409	INTRON CG7236
3L	1604325	3L_1604325_SNP [dm3] 3L_1604325_SNP [dm6]	A	C	2.764e^-6	0.409	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
2L	10643693	2L_10643693_SNP [dm3] 2L_10643693_SNP [dm6]	G	T	3.124e^-6	0.409	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
2R	12598741	2R_12598741_SNP [dm3] 2R_16711236_SNP [dm6]	A	G	3.359e^-6	0.409	INTRON CG30463
X	2823376	X_2823376_SNP [dm3] X_2929343_SNP [dm6]	G	C	3.537e^-6	0.409	UPSTREAM CG32793 INTRON kirre
2R	9253357	2R_9253357_SNP [dm3] 2R_13365852_SNP [dm6]	C	A	3.561e^-6	0.409	INTERGENIC	TF binding site mE1_TFBS_cad
X	2823428	X_2823428_SNP [dm3] X_2929395_SNP [dm6]	A	G	3.872e^-6	0.409	UPSTREAM CG32793 INTRON kirre
2R	9253351	2R_9253351_SNP [dm3] 2R_13365846_SNP [dm6]	A	T	4.088e^-6	0.409	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10921255	3L_10921255_SNP [dm3] 3L_10928155_SNP [dm6]	T	C	4.292e^-6	0.409	INTERGENIC
X	9800486	X_9800486_SNP [dm3] X_9906453_SNP [dm6]	G	A	4.365e^-6	0.409	INTERGENIC
2L	5865178	2L_5865178_SNP [dm3] 2L_5865178_SNP [dm6]	G	A	5.033e^-6	0.426	INTRON rau	TF binding site BDTNP1_TFBS_twi
2L	9440069	2L_9440069_SNP [dm3] 2L_9440069_SNP [dm6]	T	C	5.246e^-6	0.426	NON_SYNONYMOUS_CODING CG33723 INTRON numb
2R	11704581	2R_11704581_SNP [dm3] 2R_15817076_SNP [dm6]	A	G	5.378e^-6	0.426	UPSTREAM Zasp52 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5864670	2L_5864670_INS [dm3] 2L_5864670_INS [dm6]	CC	TGA	5.450e^-6	0.426	INTRON rau	TF binding site BDTNP1_TFBS_twi
X	12877933	X_12877933_SNP [dm3] X_12983900_SNP [dm6]	G	A	5.800e^-6	0.429	UPSTREAM CG32643 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12948734	3R_12948734_SNP [dm3] 3R_17123012_SNP [dm6]	G	T	5.946e^-6	0.429	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
2L	5864371	2L_5864371_SNP [dm3] 2L_5864371_SNP [dm6]	T	A	6.192e^-6	0.43	INTRON rau
2L	6398297	2L_6398297_DEL [dm3] 2L_6398297_DEL [dm6]	TCTGGAGGACGAAAG...	GT	6.824e^-6	0.434	INTRON CG42368
2R	9632106	2R_9632106_SNP [dm3] 2R_13744601_SNP [dm6]	A	T	6.853e^-6	0.434	INTRON fas
X	12877901	X_12877901_MNP [dm3] X_12983868_MNP [dm6]	TAT	ATA	6.935e^-6	0.434	UPSTREAM CG32643 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17342654	3L_17342654_SNP [dm3] 3L_17349554_SNP [dm6]	A	G	7.949e^-6	0.469	UTR_5_PRIME Mip	TF binding site BDTNP1_TFBS_dl
2L	3455416	2L_3455416_SNP [dm3] 2L_3455416_SNP [dm6]	C	T	8.219e^-6	0.469	SYNONYMOUS_CODING Cog3
3L	6518570	3L_6518570_DEL [dm3] 3L_6525470_DEL [dm6]	GCTGCCTG	G	8.691e^-6	0.469	INTRON sfl
2L	5865076	2L_5865076_SNP [dm3] 2L_5865076_SNP [dm6]	A	G	9.336e^-6	0.469	INTRON rau	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9631977	2R_9631977_SNP [dm3] 2R_13744472_SNP [dm6]	T	C	9.431e^-6	0.469	INTRON fas
2R	9632130	2R_9632130_SNP [dm3] 2R_13744625_SNP [dm6]	A	G	9.440e^-6	0.469	INTRON fas
X	2823447	X_2823447_SNP [dm3] X_2929414_SNP [dm6]	G	A	9.657e^-6	0.469	UPSTREAM CG32793 INTRON kirre
2L	7849716	2L_7849716_SNP [dm3] 2L_7849716_SNP [dm6]	G	T	9.741e^-6	0.469	INTRON CG14535
X	2823462	X_2823462_SNP [dm3] X_2929429_SNP [dm6]	A	G	9.966e^-6	0.469	UPSTREAM CG32793 INTRON kirre
2L	6001044	2L_6001044_SNP [dm3] 2L_6001044_SNP [dm6]	G	A	1.003e^-5	0.469	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4717190	2L_4717190_SNP [dm3] 2L_4717190_SNP [dm6]	T	G	1.056e^-5	0.469	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15254400	2R_15254400_SNP [dm3] 2R_19366895_SNP [dm6]	T	C	1.120e^-5	0.469	SYNONYMOUS_CODING CG10051 DOWNSTREAM CG9416
2R	11711648	2R_11711648_SNP [dm3] 2R_15824143_SNP [dm6]	C	A	1.146e^-5	0.469	INTRON tun	TF binding site mE1_TFBS_cad
X	2823413	X_2823413_SNP [dm3] X_2929380_SNP [dm6]	A	G	1.187e^-5	0.469	UPSTREAM CG32793 INTRON kirre
2L	7849532	2L_7849532_SNP [dm3] 2L_7849532_SNP [dm6]	T	C	1.214e^-5	0.469	NON_SYNONYMOUS_CODING CG14535	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	17944451	2L_17944451_SNP [dm3] 2L_17944451_SNP [dm6]	G	T	1.241e^-5	0.469	INTERGENIC
2L	5866455	2L_5866455_SNP [dm3] 2L_5866455_SNP [dm6]	T	C	1.306e^-5	0.469	INTRON rau
3L	3528311	3L_3528311_SNP [dm3] 3L_3528311_SNP [dm6]	A	G	1.327e^-5	0.469	INTRON Eip63E
2L	5895083	2L_5895083_SNP [dm3] 2L_5895083_SNP [dm6]	C	G	1.328e^-5	0.469	INTERGENIC
2L	7847710	2L_7847710_SNP [dm3] 2L_7847710_SNP [dm6]	T	G	1.363e^-5	0.469	INTRON CG14535
2R	17180522	2R_17180522_SNP [dm3] 2R_21293017_SNP [dm6]	A	T	1.370e^-5	0.469	UPSTREAM CG30392 & 1 other INTRON Sgf29	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_sens
2R	17268226	2R_17268226_SNP [dm3] 2R_21380721_SNP [dm6]	G	T	1.386e^-5	0.469	INTERGENIC	TF binding site mE1_TFBS_sens
2R	17377458	2R_17377458_DEL [dm3] 2R_21489953_DEL [dm6]	TCCATTTCAT	T	1.386e^-5	0.469	INTRON Fkbp14
3L	6513749	3L_6513749_SNP [dm3] 3L_6520649_SNP [dm6]	G	A	1.393e^-5	0.469	INTRON sfl
X	9584882	X_9584882_SNP [dm3] X_9690849_SNP [dm6]	C	G	1.402e^-5	0.469	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9261094	2L_9261094_SNP [dm3] 2L_9261094_SNP [dm6]	C	T	1.425e^-5	0.469	DOWNSTREAM CR45262 INTRON Ggamma30A
2L	9261095	2L_9261095_SNP [dm3] 2L_9261095_SNP [dm6]	C	T	1.425e^-5	0.469	DOWNSTREAM CR45262 INTRON Ggamma30A
2L	8390177	2L_8390177_SNP [dm3] 2L_8390177_SNP [dm6]	T	G	1.556e^-5	0.484	SYNONYMOUS_CODING CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17377431	2R_17377431_SNP [dm3] 2R_21489926_SNP [dm6]	G	A	1.562e^-5	0.484	INTRON Fkbp14
2L	8390546	2L_8390546_SNP [dm3] 2L_8390546_SNP [dm6]	T	C	1.572e^-5	0.484	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8464988	X_8464988_SNP [dm3] X_8570955_SNP [dm6]	C	T	1.624e^-5	0.484	UPSTREAM CG12111 DOWNSTREAM spirit & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9025445	3L_9025445_INS [dm3] 3L_9032345_INS [dm6]	A	AA	1.627e^-5	0.484	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	10532301	2R_10532301_SNP [dm3] 2R_14644796_SNP [dm6]	T	A	1.662e^-5	0.484	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10608747	2R_10608747_SNP [dm3] 2R_14721242_SNP [dm6]	C	T	1.667e^-5	0.484	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9120540	2L_9120540_INS [dm3] 2L_9120540_INS [dm6]	C	CTC	1.678e^-5	0.484	DOWNSTREAM CR44617 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	9304036	2L_9304036_SNP [dm3] 2L_9304036_SNP [dm6]	C	T	1.719e^-5	0.489	DOWNSTREAM CR42844 INTERGENIC
2R	10692431	2R_10692431_SNP [dm3] 2R_14804926_SNP [dm6]	T	G	1.765e^-5	0.494	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	7681349	2L_7681349_SNP [dm3] 2L_7681349_SNP [dm6]	G	A	1.862e^-5	0.514	SYNONYMOUS_CODING Myo28B1	TF binding site mE1_TFBS_HSA
2R	10154275	2R_10154275_SNP [dm3] 2R_14266770_SNP [dm6]	A	G	2.005e^-5	0.539	INTRON CG8547
2L	9121247	2L_9121247_SNP [dm3] 2L_9121247_SNP [dm6]	T	C	2.011e^-5	0.539	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2L	10643716	2L_10643716_SNP [dm3] 2L_10643716_SNP [dm6]	T	C	2.071e^-5	0.543	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
3L	8718207	3L_8718207_SNP [dm3] 3L_8725107_SNP [dm6]	T	A	2.097e^-5	0.543	DOWNSTREAM CG43965 INTRON CG6511
2R	19047041	2R_19047041_SNP [dm3] 2R_23159518_SNP [dm6]	C	A	2.128e^-5	0.543	NON_SYNONYMOUS_CODING CG9899
2L	17054282	2L_17054282_SNP [dm3] 2L_17054282_SNP [dm6]	A	T	2.147e^-5	0.543	INTERGENIC
X	12877871	X_12877871_SNP [dm3] X_12983838_SNP [dm6]	T	G	2.172e^-5	0.543	UPSTREAM CG32643 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17268087	2R_17268087_SNP [dm3] 2R_21380582_SNP [dm6]	A	C	2.240e^-5	0.543	INTERGENIC
2R	10608749	2R_10608749_SNP [dm3] 2R_14721244_SNP [dm6]	C	G	2.247e^-5	0.543	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6599327	2R_6599327_SNP [dm3] 2R_10711822_SNP [dm6]	C	T	2.290e^-5	0.543	SYNONYMOUS_CODING stan
2R	10763630	2R_10763630_SNP [dm3] 2R_14876125_SNP [dm6]	G	C	2.295e^-5	0.543	NON_SYNONYMOUS_CODING Cyp6a23 DOWNSTREAM Cyp6a17
2R	9631995	2R_9631995_DEL [dm3] 2R_13744490_DEL [dm6]	GT	G	2.341e^-5	0.543	INTRON fas
2L	9303748	2L_9303748_INS [dm3] 2L_9303748_INS [dm6]	G	GTCGTGGCAATG...	2.425e^-5	0.543	DOWNSTREAM CR42844 INTERGENIC
X	6905965	X_6905965_SNP [dm3] X_7011932_SNP [dm6]	C	T	2.439e^-5	0.543	SYNONYMOUS_CODING CG42308 UTR_3_PRIME CG32736 UPSTREAM cm DOWNSTREAM CG3032	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8390166	2L_8390166_SNP [dm3] 2L_8390166_SNP [dm6]	A	G	2.473e^-5	0.543	SYNONYMOUS_CODING CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4376521	2L_4376521_SNP [dm3] 2L_4376521_SNP [dm6]	A	T	2.482e^-5	0.543	INTRON Traf4	TF binding site mE1_TFBS_cad
3R	22552060	3R_22552060_SNP [dm3] 3R_26726338_SNP [dm6]	G	A	2.488e^-5	0.543	SYNONYMOUS_CODING CG14244 UPSTREAM CG14246
3R	8071278	3R_8071278_SNP [dm3] 3R_12245556_SNP [dm6]	G	C	2.501e^-5	0.543	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	19913184	2L_19913184_SNP [dm3] 2L_19913184_SNP [dm6]	A	G	2.525e^-5	0.543	SYNONYMOUS_CODING Victoria UPSTREAM TotF INTRON sick
2R	17378262	2R_17378262_SNP [dm3] 2R_21490757_SNP [dm6]	G	T	2.547e^-5	0.543	INTRON Fkbp14
2L	10643708	2L_10643708_SNP [dm3] 2L_10643708_SNP [dm6]	A	T	2.621e^-5	0.552	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
3L	6532545	3L_6532545_SNP [dm3] 3L_6539445_SNP [dm6]	A	G	2.659e^-5	0.554	INTRON sfl
X	18461540	X_18461540_SNP [dm3] X_18567507_SNP [dm6]	G	T	2.721e^-5	0.557	SPLICE_SITE_REGION Bx INTRON Bx
3L	2263668	3L_2263668_SNP [dm3] 3L_2263668_SNP [dm6]	T	A	2.758e^-5	0.557	NON_SYNONYMOUS_CODING ecd DOWNSTREAM CG13807	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	5615803	X_5615803_DEL [dm3] X_5721770_DEL [dm6]	ATTGTGCA	A	2.792e^-5	0.557	INTRON CG32758
X	5615812	X_5615812_SNP [dm3] X_5721779_SNP [dm6]	C	T	2.792e^-5	0.557	INTRON CG32758
2L	2844914	2L_2844914_SNP [dm3] 2L_2844914_SNP [dm6]	G	A	2.902e^-5	0.57	NON_SYNONYMOUS_CODING CG18557 UPSTREAM CG18558	TF binding site mE1_TFBS_cad
X	4548215	X_4548215_SNP [dm3] X_4654182_SNP [dm6]	T	C	2.916e^-5	0.57	SYNONYMOUS_CODING CG15473 INTRON Cbp80	TF binding site mE1_TFBS_chinmo
3L	4100722	3L_4100722_SNP [dm3] 3L_4100722_SNP [dm6]	C	T	3.044e^-5	0.583	INTRON CG14995
2L	7847730	2L_7847730_SNP [dm3] 2L_7847730_SNP [dm6]	T	G	3.046e^-5	0.583	INTRON CG14535	TF binding site mE1_TFBS_cad
2R	10673027	2R_10673027_SNP [dm3] 2R_14785522_SNP [dm6]	G	A	3.091e^-5	0.586	INTRON kn
2R	10151602	2R_10151602_SNP [dm3] 2R_14264097_SNP [dm6]	C	T	3.149e^-5	0.589	INTRON CG8547	TF binding site mE1_TFBS_cad
2L	5974565	2L_5974565_SNP [dm3] 2L_5974565_SNP [dm6]	C	A	3.171e^-5	0.589	INTRON chic
3L	8718212	3L_8718212_SNP [dm3] 3L_8725112_SNP [dm6]	C	A	3.220e^-5	0.59	DOWNSTREAM CG43965 INTRON CG6511
2L	18904016	2L_18904016_SNP [dm3] 2L_18904016_SNP [dm6]	A	G	3.238e^-5	0.59	INTERGENIC
2L	9410195	2L_9410195_SNP [dm3] 2L_9410195_SNP [dm6]	C	A	3.342e^-5	0.6	INTRON Shawl
X	18988419	X_18988419_SNP [dm3] X_19094386_SNP [dm6]	G	C	3.362e^-5	0.6	INTERGENIC
2R	8776020	2R_8776020_INS [dm3] 2R_12888515_INS [dm6]	T	TAGT	3.396e^-5	0.6	INTRON vg
2L	3459137	2L_3459137_SNP [dm3] 2L_3459137_SNP [dm6]	G	A	3.420e^-5	0.6	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9120812	2L_9120812_SNP [dm3] 2L_9120812_SNP [dm6]	T	C	3.584e^-5	0.607	DOWNSTREAM CR44617 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	3998140	3R_3998140_INS [dm3] 3R_8172418_INS [dm6]	A	AACCA	3.643e^-5	0.607	INTRON grn	TF binding site mE1_TFBS_HSA
X	19589031	X_19589031_SNP [dm3] X_19694998_SNP [dm6]	T	A	3.702e^-5	0.607	UTR_5_PRIME CG14229	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19906799	2L_19906799_SNP [dm3] 2L_19906799_SNP [dm6]	A	G	3.753e^-5	0.607	INTRON sick
3R	15878847	3R_15878847_SNP [dm3] 3R_20053125_SNP [dm6]	G	A	3.763e^-5	0.607	INTRON CG17193	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sbb
2L	5864750	2L_5864750_SNP [dm3] 2L_5864750_SNP [dm6]	G	T	3.792e^-5	0.607	INTRON rau	TF binding site BDTNP1_TFBS_twi
3R	2674822	3R_2674822_SNP [dm3] 3R_6849100_SNP [dm6]	G	C	3.793e^-5	0.607	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7475070	2R_7475070_SNP [dm3] 2R_11587565_SNP [dm6]	A	T	3.800e^-5	0.607	SYNONYMOUS_CODING tou DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	9119950	2L_9119950_SNP [dm3] 2L_9119950_SNP [dm6]	A	G	3.817e^-5	0.607	EXON CR44617
2L	18127038	2L_18127038_SNP [dm3] 2L_18127038_SNP [dm6]	A	C	3.874e^-5	0.607	INTRON CG5758
3L	12419238	3L_12419238_SNP [dm3] 3L_12426138_SNP [dm6]	C	T	3.920e^-5	0.607	INTRON toe
2L	5865031	2L_5865031_SNP [dm3] 2L_5865031_SNP [dm6]	T	C	3.943e^-5	0.607	INTRON rau	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16414453	X_16414453_SNP [dm3] X_16520420_SNP [dm6]	T	C	3.963e^-5	0.607	INTRON para
2L	6000885	2L_6000885_SNP [dm3] 2L_6000885_SNP [dm6]	T	C	4.028e^-5	0.607	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10608610	2R_10608610_SNP [dm3] 2R_14721105_SNP [dm6]	C	G	4.035e^-5	0.607	INTERGENIC
X	5212856	X_5212856_SNP [dm3] X_5318823_SNP [dm6]	A	T	4.042e^-5	0.607	UTR_3_PRIME Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo
2R	12370631	2R_12370631_SNP [dm3] 2R_16483126_SNP [dm6]	G	A	4.042e^-5	0.607	INTERGENIC
2L	7091084	2L_7091084_SNP [dm3] 2L_7091084_SNP [dm6]	A	T	4.049e^-5	0.607	INTERGENIC
X	8414105	X_8414105_SNP [dm3] X_8520072_SNP [dm6]	G	C	4.135e^-5	0.607	INTRON Nrg
2L	8363433	2L_8363433_DEL [dm3] 2L_8363433_DEL [dm6]	CC	C	4.147e^-5	0.607	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	7629473	2L_7629473_SNP [dm3] 2L_7629473_SNP [dm6]	A	C	4.206e^-5	0.607	INTERGENIC
2L	9120390	2L_9120390_SNP [dm3] 2L_9120390_SNP [dm6]	A	C	4.234e^-5	0.607	DOWNSTREAM CR44617 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
X	12877595	X_12877595_SNP [dm3] X_12983562_SNP [dm6]	T	C	4.234e^-5	0.607	UPSTREAM CG32643 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5212891	X_5212891_SNP [dm3] X_5318858_SNP [dm6]	C	A	4.262e^-5	0.607	UTR_3_PRIME Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo
2R	11813827	2R_11813827_SNP [dm3] 2R_15926322_SNP [dm6]	G	A	4.273e^-5	0.607	NON_SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
3L	5415749	3L_5415749_SNP [dm3] 3L_5422649_SNP [dm6]	A	C	4.367e^-5	0.616	INTERGENIC
X	9585103	X_9585103_SNP [dm3] X_9691070_SNP [dm6]	A	G	4.592e^-5	0.623	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8969596	3L_8969596_SNP [dm3] 3L_8976496_SNP [dm6]	A	G	4.612e^-5	0.623	SYNONYMOUS_CODING Srp68 DOWNSTREAM CG5644	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13527066	2R_13527066_SNP [dm3] 2R_17639561_SNP [dm6]	T	C	4.636e^-5	0.623	UPSTREAM CG10936 INTERGENIC
3R	4400876	3R_4400876_INS [dm3] 3R_8575154_INS [dm6]	T	TT	4.639e^-5	0.623	INTERGENIC
2L	5864887	2L_5864887_SNP [dm3] 2L_5864887_SNP [dm6]	C	T	4.695e^-5	0.623	INTRON rau	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5901380	X_5901380_SNP [dm3] X_6007347_SNP [dm6]	A	C	4.773e^-5	0.623	DOWNSTREAM mab-21 INTERGENIC
2R	12012548	2R_12012548_SNP [dm3] 2R_16125043_SNP [dm6]	A	G	4.793e^-5	0.623	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	22162506	X_22162506_SNP [dm3] X_22760670_SNP [dm6]	T	A	4.882e^-5	0.623	INTRON CR44997
2L	7752851	2L_7752851_SNP [dm3] 2L_7752851_SNP [dm6]	G	A	4.962e^-5	0.623	UPSTREAM CR45718 INTRON CG7203
X	5901379	X_5901379_SNP [dm3] X_6007346_SNP [dm6]	C	A	4.982e^-5	0.623	DOWNSTREAM mab-21 INTERGENIC
2L	19313601	2L_19313601_SNP [dm3] 2L_19313601_SNP [dm6]	C	T	4.983e^-5	0.623	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15059588	2R_15059588_SNP [dm3] 2R_19172083_SNP [dm6]	G	A	5.019e^-5	0.623	INTRON CG10737
2L	5890030	2L_5890030_SNP [dm3] 2L_5890030_SNP [dm6]	A	G	5.071e^-5	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	7847734	2L_7847734_SNP [dm3] 2L_7847734_SNP [dm6]	A	G	5.096e^-5	0.623	INTRON CG14535	TF binding site mE1_TFBS_cad
2L	5864641	2L_5864641_SNP [dm3] 2L_5864641_SNP [dm6]	A	C	5.143e^-5	0.623	INTRON rau	TF binding site BDTNP1_TFBS_twi
2L	5865468	2L_5865468_SNP [dm3] 2L_5865468_SNP [dm6]	G	T	5.180e^-5	0.623	INTRON rau
2L	2320995	2L_2320995_SNP [dm3] 2L_2320995_SNP [dm6]	A	G	5.198e^-5	0.623	INTRON CG9967 & 1 other
X	17103413	X_17103413_SNP [dm3] X_17209380_SNP [dm6]	C	T	5.266e^-5	0.623	UTR_3_PRIME CG12995 DOWNSTREAM CG32563	TF binding site BDTNP1_TFBS_sna
2R	10154268	2R_10154268_SNP [dm3] 2R_14266763_SNP [dm6]	T	C	5.275e^-5	0.623	INTRON CG8547
X	12877523	X_12877523_DEL [dm3] X_12983490_DEL [dm6]	GCG	G	5.322e^-5	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7047925	2L_7047925_SNP [dm3] 2L_7047925_SNP [dm6]	T	C	5.447e^-5	0.623	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	14424800	2L_14424800_SNP [dm3] 2L_14424800_SNP [dm6]	A	G	5.452e^-5	0.623	SYNONYMOUS_CODING Cpr35B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7048225	2L_7048225_SNP [dm3] 2L_7048225_SNP [dm6]	A	T	5.468e^-5	0.623	INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8913698	2R_8913698_SNP [dm3] 2R_13026193_SNP [dm6]	A	T	5.483e^-5	0.623	INTERGENIC
2L	3457119	2L_3457119_SNP [dm3] 2L_3457119_SNP [dm6]	C	A	5.494e^-5	0.623	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	26762961	3R_26762961_SNP [dm3] 3R_30937239_SNP [dm6]	T	G	5.502e^-5	0.623	UPSTREAM CG15549 & 1 other INTERGENIC
X	6905972	X_6905972_SNP [dm3] X_7011939_SNP [dm6]	C	T	5.550e^-5	0.623	SYNONYMOUS_CODING CG42308 UTR_3_PRIME CG32736 UPSTREAM cm DOWNSTREAM CG3032	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18142771	3L_18142771_INS [dm3] 3L_18149671_INS [dm6]	A	AA	5.563e^-5	0.623	INTRON CG7330
3L	3576742	3L_3576742_SNP [dm3] 3L_3576742_SNP [dm6]	C	T	5.601e^-5	0.623	INTRON Eip63E
3R	14345446	3R_14345446_SNP [dm3] 3R_18519724_SNP [dm6]	T	G	5.610e^-5	0.623	INTRON fru
3R	12948767	3R_12948767_DEL [dm3] 3R_17123045_DEL [dm6]	TT	A	5.648e^-5	0.623	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
2R	10785994	2R_10785994_SNP [dm3] 2R_14898489_SNP [dm6]	G	T	5.654e^-5	0.623	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	5212852	X_5212852_SNP [dm3] X_5318819_SNP [dm6]	T	A	5.667e^-5	0.623	UTR_3_PRIME Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo
3R	22660904	3R_22660904_SNP [dm3] 3R_26835182_SNP [dm6]	A	G	5.671e^-5	0.623	INTRON Tl
X	17726094	X_17726094_SNP [dm3] X_17832061_SNP [dm6]	T	A	5.672e^-5	0.623	UPSTREAM CR44691 INTRON CG6398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	9176332	2R_9176332_SNP [dm3] 2R_13288827_SNP [dm6]	A	T	5.700e^-5	0.623	INTRON Dh31-R
X	9829057	X_9829057_SNP [dm3] X_9935024_SNP [dm6]	A	T	5.717e^-5	0.623	INTERGENIC
2L	13694324	2L_13694324_SNP [dm3] 2L_13694324_SNP [dm6]	G	A	5.728e^-5	0.623	INTRON CG31814
2R	10508075	2R_10508075_SNP [dm3] 2R_14620570_SNP [dm6]	A	T	5.750e^-5	0.623	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11729231	2L_11729231_SNP [dm3] 2L_11729231_SNP [dm6]	T	C	5.817e^-5	0.623	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19920060	2L_19920060_SNP [dm3] 2L_19920060_SNP [dm6]	A	G	5.847e^-5	0.623	INTRON sick EXON CR43828
2R	9631952	2R_9631952_SNP [dm3] 2R_13744447_SNP [dm6]	T	C	5.869e^-5	0.623	INTRON fas
X	9986149	X_9986149_SNP [dm3] X_10092116_SNP [dm6]	C	T	5.912e^-5	0.623	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9456108	2R_9456108_SNP [dm3] 2R_13568603_SNP [dm6]	G	A	5.983e^-5	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	13526872	2R_13526872_SNP [dm3] 2R_17639367_SNP [dm6]	G	C	6.002e^-5	0.623	UPSTREAM CG10936 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	10630373	2L_10630373_SNP [dm3] 2L_10630373_SNP [dm6]	G	A	6.019e^-5	0.623	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12602224	2R_12602224_INS [dm3] 2R_16714719_INS [dm6]	G	GTTTATATAG	6.027e^-5	0.623	INTRON CG30463
2R	14706061	2R_14706061_SNP [dm3] 2R_18818556_SNP [dm6]	T	C	6.036e^-5	0.623	UPSTREAM Phb2 INTERGENIC
X	17431130	X_17431130_SNP [dm3] X_17537097_SNP [dm6]	A	G	6.066e^-5	0.623	INTRON CG43658
3L	10921628	3L_10921628_SNP [dm3] 3L_10928528_SNP [dm6]	T	G	6.160e^-5	0.623	INTERGENIC
2L	10643706	2L_10643706_SNP [dm3] 2L_10643706_SNP [dm6]	C	T	6.172e^-5	0.623	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
2L	8389638	2L_8389638_SNP [dm3] 2L_8389638_SNP [dm6]	A	T	6.174e^-5	0.623	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
3R	2668629	3R_2668629_SNP [dm3] 3R_6842907_SNP [dm6]	T	A	6.200e^-5	0.623	INTRON Scr	regulatory region FlyBase REDfly_CRMs
2R	9631997	2R_9631997_SNP [dm3] 2R_13744492_SNP [dm6]	T	G	6.210e^-5	0.623	INTRON fas
X	19720028	X_19720028_DEL [dm3] X_19825995_DEL [dm6]	CTTCT	C	6.273e^-5	0.626	INTERGENIC
2R	17622058	2R_17622058_SNP [dm3] 2R_21734553_SNP [dm6]	A	G	6.340e^-5	0.629	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5867202	2L_5867202_SNP [dm3] 2L_5867202_SNP [dm6]	C	T	6.422e^-5	0.634	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10368189	2R_10368189_SNP [dm3] 2R_14480684_SNP [dm6]	G	C	6.553e^-5	0.638	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	10673029	2R_10673029_SNP [dm3] 2R_14785524_SNP [dm6]	T	G	6.585e^-5	0.638	INTRON kn
2R	17181878	2R_17181878_SNP [dm3] 2R_21294373_SNP [dm6]	G	T	6.657e^-5	0.638	UTR_3_PRIME RpL29 UPSTREAM Sgf29 DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	3394496	2L_3394496_SNP [dm3] 2L_3394496_SNP [dm6]	G	A	6.669e^-5	0.638	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14249480	3L_14249480_SNP [dm3] 3L_14256380_SNP [dm6]	T	C	6.677e^-5	0.638	INTERGENIC
2R	11814354	2R_11814354_SNP [dm3] 2R_15926849_SNP [dm6]	C	T	6.694e^-5	0.638	NON_SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2L	19921170	2L_19921170_SNP [dm3] 2L_19921170_SNP [dm6]	T	A	6.703e^-5	0.638	INTRON sick EXON CR43828
2R	9613794	2R_9613794_SNP [dm3] 2R_13726289_SNP [dm6]	T	G	6.844e^-5	0.645	INTRON fas	TF binding site BDTNP1_TFBS_da
2L	3394393	2L_3394393_SNP [dm3] 2L_3394393_SNP [dm6]	G	C	6.846e^-5	0.645	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12598554	2R_12598554_SNP [dm3] 2R_16711049_SNP [dm6]	T	C	6.875e^-5	0.645	INTRON CG30463
2R	12598563	2R_12598563_SNP [dm3] 2R_16711058_SNP [dm6]	C	T	6.970e^-5	0.65	INTRON CG30463
3L	7002128	3L_7002128_SNP [dm3] 3L_7009028_SNP [dm6]	A	G	7.033e^-5	0.65	INTRON Mp
2R	9176336	2R_9176336_SNP [dm3] 2R_13288831_SNP [dm6]	T	A	7.072e^-5	0.65	INTRON Dh31-R
2L	7752823	2L_7752823_SNP [dm3] 2L_7752823_SNP [dm6]	A	G	7.111e^-5	0.65	UPSTREAM CR45718 INTRON CG7203
2R	8446090	2R_8446090_SNP [dm3] 2R_12558585_SNP [dm6]	A	G	7.230e^-5	0.65	NON_SYNONYMOUS_CODING fra INTRON fra
2R	17245461	2R_17245461_SNP [dm3] 2R_21357956_SNP [dm6]	C	G	7.252e^-5	0.65	SYNONYMOUS_CODING cv-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9046729	3L_9046729_SNP [dm3] 3L_9053629_SNP [dm6]	A	G	7.278e^-5	0.65	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6001191	2L_6001191_SNP [dm3] 2L_6001191_SNP [dm6]	C	T	7.319e^-5	0.65	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	7315563	2R_7315563_SNP [dm3] 2R_11428058_SNP [dm6]	A	G	7.382e^-5	0.65	UPSTREAM Drip INTRON Drip
2L	7842500	2L_7842500_SNP [dm3] 2L_7842500_SNP [dm6]	G	A	7.399e^-5	0.65	INTERGENIC
2L	3272656	2L_3272656_INS [dm3] 2L_3272656_INS [dm6]	T	TTATCTTATTACCGCGT...	7.454e^-5	0.65	DOWNSTREAM CG3347 INTERGENIC
2L	4443508	2L_4443508_SNP [dm3] 2L_4443508_SNP [dm6]	G	C	7.470e^-5	0.65	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4444288	2L_4444288_SNP [dm3] 2L_4444288_SNP [dm6]	G	A	7.478e^-5	0.65	SYNONYMOUS_CODING morgue UPSTREAM Elp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10873206	2R_10873206_SNP [dm3] 2R_14985701_SNP [dm6]	G	A	7.497e^-5	0.65	INTRON pcs	TF binding site mE1_TFBS_cad
2R	10673026	2R_10673026_SNP [dm3] 2R_14785521_SNP [dm6]	A	T	7.499e^-5	0.65	INTRON kn
2R	6871123	2R_6871123_SNP [dm3] 2R_10983618_SNP [dm6]	T	G	7.528e^-5	0.65	INTRON luna
X	5212890	X_5212890_SNP [dm3] X_5318857_SNP [dm6]	A	C	7.542e^-5	0.65	UTR_3_PRIME Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo
3L	4436327	3L_4436327_INS [dm3] 3L_4436327_INS [dm6]	A	ACAATA	7.601e^-5	0.65	UPSTREAM CG15021 DOWNSTREAM nAChRbeta1 INTERGENIC
2L	6001758	2L_6001758_SNP [dm3] 2L_6001758_SNP [dm6]	C	A	7.617e^-5	0.65	UTR_3_PRIME Tsp26A
2L	4393067	2L_4393067_SNP [dm3] 2L_4393067_SNP [dm6]	G	T	7.659e^-5	0.65	SYNONYMOUS_CODING CG3652 DOWNSTREAM Tps1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7848320	2L_7848320_SNP [dm3] 2L_7848320_SNP [dm6]	A	T	7.673e^-5	0.65	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad
2L	19908454	2L_19908454_SNP [dm3] 2L_19908454_SNP [dm6]	C	T	7.778e^-5	0.65	INTRON sick
X	6905980	X_6905980_SNP [dm3] X_7011947_SNP [dm6]	C	T	7.791e^-5	0.65	SYNONYMOUS_CODING CG42308 UTR_3_PRIME CG32736 UPSTREAM cm DOWNSTREAM CG3032	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	18465549	2R_18465549_SNP [dm3] 2R_22578044_SNP [dm6]	G	A	7.801e^-5	0.65	INTRON dnr1
2L	19921693	2L_19921693_SNP [dm3] 2L_19921693_SNP [dm6]	G	C	7.857e^-5	0.65	INTRON sick EXON CR43828
2L	6001227	2L_6001227_SNP [dm3] 2L_6001227_SNP [dm6]	G	T	7.869e^-5	0.65	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12598555	2R_12598555_SNP [dm3] 2R_16711050_SNP [dm6]	G	A	7.920e^-5	0.65	INTRON CG30463
X	7685442	X_7685442_SNP [dm3] X_7791409_SNP [dm6]	C	T	7.954e^-5	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	10711040	2R_10711040_SNP [dm3] 2R_14823535_SNP [dm6]	G	A	7.956e^-5	0.65	DOWNSTREAM CR45329 INTERGENIC
2R	10517407	2R_10517407_SNP [dm3] 2R_14629902_SNP [dm6]	T	C	8.002e^-5	0.65	UPSTREAM CG10131 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4443522	2L_4443522_SNP [dm3] 2L_4443522_SNP [dm6]	G	A	8.026e^-5	0.65	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	7685480	X_7685480_SNP [dm3] X_7791447_SNP [dm6]	A	G	8.048e^-5	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	4845570	2L_4845570_SNP [dm3] 2L_4845570_SNP [dm6]	A	G	8.075e^-5	0.65	SYNONYMOUS_CODING mxt	TF binding site mE1_TFBS_chinmo
2L	10632111	2L_10632111_SNP [dm3] 2L_10632111_SNP [dm6]	A	G	8.130e^-5	0.652	UPSTREAM CG7329 INTRON CG7329
2L	10885673	2L_10885673_SNP [dm3] 2L_10885673_SNP [dm6]	T	A	8.207e^-5	0.653	UPSTREAM CR44490 INTERGENIC
2L	4845584	2L_4845584_SNP [dm3] 2L_4845584_SNP [dm6]	C	T	8.221e^-5	0.653	INTRON mxt	TF binding site mE1_TFBS_chinmo
2L	5892576	2L_5892576_SNP [dm3] 2L_5892576_SNP [dm6]	T	C	8.257e^-5	0.653	SYNONYMOUS_CODING Acp26Ab DOWNSTREAM Acp26Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19921758	2L_19921758_SNP [dm3] 2L_19921758_SNP [dm6]	A	C	8.380e^-5	0.655	INTRON sick EXON CR43828
2L	19921837	2L_19921837_SNP [dm3] 2L_19921837_SNP [dm6]	G	C	8.401e^-5	0.655	INTRON sick EXON CR43828
2R	18050570	2R_18050570_SNP [dm3] 2R_22163065_SNP [dm6]	A	C	8.427e^-5	0.655	NON_SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
2L	13931020	2L_13931020_SNP [dm3] 2L_13931020_SNP [dm6]	T	C	8.455e^-5	0.655	SYNONYMOUS_CODING CG42711 INTRON Ance-3
2L	5018441	2L_5018441_INS [dm3] 2L_5018441_INS [dm6]	T	TT	8.509e^-5	0.655	INTRON vkg	TF binding site mE1_TFBS_HSA
2R	7982903	2R_7982903_SNP [dm3] 2R_12095398_SNP [dm6]	T	C	8.534e^-5	0.655	INTRON jeb
2L	484142	2L_484142_SNP [dm3] 2L_484142_SNP [dm6]	C	T	8.542e^-5	0.655	INTRON ush
3L	4589611	3L_4589611_SNP [dm3] 3L_4589611_SNP [dm6]	T	A	8.577e^-5	0.655	INTRON CG42540
2L	10038214	2L_10038214_SNP [dm3] 2L_10038214_SNP [dm6]	G	A	8.607e^-5	0.655	SPLICE_SITE_REGION obst-B INTRON obst-B
2L	5866476	2L_5866476_DEL [dm3] 2L_5866476_DEL [dm6]	GTTTAGGCAGAG...	G	8.650e^-5	0.655	INTRON rau	TF binding site BDTNP1_TFBS_da
3L	4435609	3L_4435609_SNP [dm3] 3L_4435609_SNP [dm6]	C	T	8.693e^-5	0.655	UTR_3_PRIME nAChRbeta1
X	14280576	X_14280576_SNP [dm3] X_14386543_SNP [dm6]	A	G	8.723e^-5	0.655	INTRON dpr8
2R	9456114	2R_9456114_SNP [dm3] 2R_13568609_SNP [dm6]	C	T	8.797e^-5	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	18730869	2L_18730869_INS [dm3] 2L_18730869_INS [dm6]	TC	CAGA	8.829e^-5	0.655	INTRON CG10348
2R	12598570	2R_12598570_SNP [dm3] 2R_16711065_SNP [dm6]	T	A	8.864e^-5	0.655	INTRON CG30463
3R	2666866	3R_2666866_DEL [dm3] 3R_6841144_DEL [dm6]	AG	A	8.961e^-5	0.655	INTRON Scr	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
X	5609418	X_5609418_SNP [dm3] X_5715385_SNP [dm6]	G	T	8.967e^-5	0.655	UTR_5_PRIME CG33080 INTRON CG33080
2L	3455419	2L_3455419_SNP [dm3] 2L_3455419_SNP [dm6]	A	G	8.991e^-5	0.655	SYNONYMOUS_CODING Cog3
3L	18009990	3L_18009990_SNP [dm3] 3L_18016890_SNP [dm6]	T	A	8.995e^-5	0.655	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
3R	15878733	3R_15878733_SNP [dm3] 3R_20053011_SNP [dm6]	A	G	9.010e^-5	0.655	INTRON CG17193	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sbb
X	10342837	X_10342837_SNP [dm3] X_10448804_SNP [dm6]	C	T	9.011e^-5	0.655	INTRON CG32683
3R	15640532	3R_15640532_SNP [dm3] 3R_19814810_SNP [dm6]	A	C	9.155e^-5	0.658	INTRON bnl
2R	10608696	2R_10608696_SNP [dm3] 2R_14721191_SNP [dm6]	G	A	9.232e^-5	0.658	INTERGENIC
X	9828875	X_9828875_SNP [dm3] X_9934842_SNP [dm6]	C	T	9.246e^-5	0.658	INTERGENIC
2R	3373740	2R_3373740_SNP [dm3] 2R_7486235_SNP [dm6]	G	A	9.282e^-5	0.658	UTR_5_PRIME wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9209643	2R_9209643_SNP [dm3] 2R_13322138_SNP [dm6]	A	G	9.332e^-5	0.658	INTERGENIC
2R	6865062	2R_6865062_SNP [dm3] 2R_10977557_SNP [dm6]	C	A	9.336e^-5	0.658	DOWNSTREAM luna INTERGENIC
2L	4576819	2L_4576819_SNP [dm3] 2L_4576819_SNP [dm6]	A	G	9.360e^-5	0.658	DOWNSTREAM HP6 INTRON dp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	18290193	3L_18290193_DEL [dm3] 3L_18297093_DEL [dm6]	TG	T	9.404e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	7685437	X_7685437_SNP [dm3] X_7791404_SNP [dm6]	C	T	9.473e^-5	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5866516	2L_5866516_SNP [dm3] 2L_5866516_SNP [dm6]	A	G	9.493e^-5	0.658	INTRON rau	TF binding site BDTNP1_TFBS_da
3L	18295609	3L_18295609_SNP [dm3] 3L_18302509_SNP [dm6]	A	G	9.518e^-5	0.658	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	9261424	2L_9261424_SNP [dm3] 2L_9261424_SNP [dm6]	G	A	9.554e^-5	0.658	DOWNSTREAM CR45262 INTRON Ggamma30A
2R	14160219	2R_14160219_SNP [dm3] 2R_18272714_SNP [dm6]	A	T	9.615e^-5	0.658	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	4969288	2R_4969288_SNP [dm3] 2R_9081783_SNP [dm6]	G	A	9.629e^-5	0.658	SYNONYMOUS_CODING CG8083 UPSTREAM CNT1
2L	10411391	2L_10411391_SNP [dm3] 2L_10411391_SNP [dm6]	T	C	9.633e^-5	0.658	DOWNSTREAM RpS27A INTRON CG5355	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19978259	2L_19978259_SNP [dm3] 2L_19978259_SNP [dm6]	A	G	9.703e^-5	0.658	UPSTREAM CR43620 INTRON CG43861
2L	3457159	2L_3457159_SNP [dm3] 2L_3457159_SNP [dm6]	T	C	9.735e^-5	0.658	UPSTREAM Sec5 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	3457190	2L_3457190_SNP [dm3] 2L_3457190_SNP [dm6]	T	C	9.767e^-5	0.658	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	8390381	2L_8390381_SNP [dm3] 2L_8390381_SNP [dm6]	C	T	9.815e^-5	0.658	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16380950	2L_16380950_SNP [dm3] 2L_16380950_SNP [dm6]	A	G	9.842e^-5	0.658	INTERGENIC
2R	14970076	2R_14970076_SNP [dm3] 2R_19082571_SNP [dm6]	A	G	9.903e^-5	0.658	INTRON 5-HT1A
3R	17824008	3R_17824008_SNP [dm3] 3R_21998286_SNP [dm6]	T	A	9.927e^-5	0.658	INTRON Eip93F
2L	20260736	2L_20260736_SNP [dm3] 2L_20260736_SNP [dm6]	G	A	9.950e^-5	0.658	INTERGENIC
3L	9046970	3L_9046970_SNP [dm3] 3L_9053870_SNP [dm6]	C	T	9.987e^-5	0.658	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12365072	3R_12365072_SNP [dm3] 3R_16539350_SNP [dm6]	G	T	1.004e^-4	0.658	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1867049	2L_1867049_SNP [dm3] 2L_1867049_SNP [dm6]	T	A	1.005e^-4	0.658	SYNONYMOUS_CODING CG31663	TF binding site mE1_TFBS_HSA
X	9412941	X_9412941_SNP [dm3] X_9518908_SNP [dm6]	A	G	1.007e^-4	0.658	INTRON CG32700
2L	10885670	2L_10885670_SNP [dm3] 2L_10885670_SNP [dm6]	C	G	1.010e^-4	0.658	UPSTREAM CR44490 INTERGENIC
3R	26762888	3R_26762888_SNP [dm3] 3R_30937166_SNP [dm6]	A	C	1.025e^-4	0.658	UPSTREAM CG15549 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4589512	3L_4589512_SNP [dm3] 3L_4589512_SNP [dm6]	A	G	1.027e^-4	0.658	INTRON CG42540
2L	6000685	2L_6000685_SNP [dm3] 2L_6000685_SNP [dm6]	T	C	1.030e^-4	0.658	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10508071	2R_10508071_SNP [dm3] 2R_14620566_SNP [dm6]	G	T	1.035e^-4	0.658	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	9626616	2R_9626616_SNP [dm3] 2R_13739111_SNP [dm6]	C	T	1.041e^-4	0.658	INTRON fas
X	12877673	X_12877673_SNP [dm3] X_12983640_SNP [dm6]	C	A	1.048e^-4	0.658	UPSTREAM CG32643 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7474501	2R_7474501_SNP [dm3] 2R_11586996_SNP [dm6]	G	A	1.057e^-4	0.658	SYNONYMOUS_CODING tou
X	6905974	X_6905974_SNP [dm3] X_7011941_SNP [dm6]	G	A	1.064e^-4	0.658	SYNONYMOUS_CODING CG42308 UTR_3_PRIME CG32736 UPSTREAM cm DOWNSTREAM CG3032	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12198042	2R_12198042_SNP [dm3] 2R_16310537_SNP [dm6]	C	T	1.065e^-4	0.658	INTRON Nox	TF binding site mE1_TFBS_chinmo
2L	5150488	2L_5150488_SNP [dm3] 2L_5150488_SNP [dm6]	G	A	1.067e^-4	0.658	INTRON Msp300
2R	18051252	2R_18051252_SNP [dm3] 2R_22163747_SNP [dm6]	G	T	1.073e^-4	0.658	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
2L	7053374	2L_7053374_SNP [dm3] 2L_7053374_SNP [dm6]	T	C	1.073e^-4	0.658	INTRON milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22156679	X_22156679_SNP [dm3] X_22754843_SNP [dm6]	G	A	1.074e^-4	0.658	INTRON CR44997	transposable element FlyBase
X	10020009	X_10020009_SNP [dm3] X_10125976_SNP [dm6]	C	T	1.078e^-4	0.658	INTRON CR44894 & 1 other
2L	5031058	2L_5031058_SNP [dm3] 2L_5031058_SNP [dm6]	T	C	1.093e^-4	0.658	SYNONYMOUS_CODING Cg25C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	5427452	2L_5427452_SNP [dm3] 2L_5427452_SNP [dm6]	G	T	1.094e^-4	0.658	INTERGENIC
2R	4969919	2R_4969919_SNP [dm3] 2R_9082414_SNP [dm6]	A	C	1.094e^-4	0.658	UTR_5_PRIME CNT1 DOWNSTREAM CG8083
2L	5451972	2L_5451972_SNP [dm3] 2L_5451972_SNP [dm6]	G	A	1.103e^-4	0.658	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7603920	2L_7603920_SNP [dm3] 2L_7603920_SNP [dm6]	C	T	1.107e^-4	0.658	UPSTREAM CR45370 INTERGENIC
X	6333675	X_6333675_INS [dm3] X_6439642_INS [dm6]	A	ATTGGTTTATGGCA...	1.113e^-4	0.658	INTRON CG42340
2R	18051253	2R_18051253_INS [dm3] 2R_22163748_INS [dm6]	C	CAAAAT	1.114e^-4	0.658	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
3L	4605796	3L_4605796_SNP [dm3] 3L_4605796_SNP [dm6]	A	C	1.122e^-4	0.658	INTRON Src64B
2R	10608631	2R_10608631_SNP [dm3] 2R_14721126_SNP [dm6]	G	A	1.125e^-4	0.658	INTERGENIC
2L	3457122	2L_3457122_SNP [dm3] 2L_3457122_SNP [dm6]	A	G	1.125e^-4	0.658	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	3457141	2L_3457141_SNP [dm3] 2L_3457141_SNP [dm6]	G	A	1.125e^-4	0.658	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	3457151	2L_3457151_SNP [dm3] 2L_3457151_SNP [dm6]	A	T	1.125e^-4	0.658	UPSTREAM Sec5 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	11314267	X_11314267_SNP [dm3] X_11420234_SNP [dm6]	G	A	1.125e^-4	0.658	INTERGENIC
3L	10322085	3L_10322085_SNP [dm3] 3L_10328985_SNP [dm6]	C	T	1.127e^-4	0.658	INTERGENIC
2R	15220811	2R_15220811_SNP [dm3] 2R_19333306_SNP [dm6]	C	G	1.130e^-4	0.658	INTRON Rgk1 & 1 other
2L	4845602	2L_4845602_SNP [dm3] 2L_4845602_SNP [dm6]	C	A	1.131e^-4	0.658	INTRON mxt	TF binding site mE1_TFBS_chinmo
3L	13976754	3L_13976754_SNP [dm3] 3L_13983654_SNP [dm6]	G	A	1.132e^-4	0.658	INTRON CG17364
2R	18051256	2R_18051256_INS [dm3] 2R_22163751_INS [dm6]	A	ATA	1.148e^-4	0.658	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
2L	2684777	2L_2684777_SNP [dm3] 2L_2684777_SNP [dm6]	T	G	1.149e^-4	0.658	INTRON CG31690
3L	19960766	3L_19960766_SNP [dm3] 3L_19967666_SNP [dm6]	G	C	1.152e^-4	0.658	INTRON Ac76E
2R	17377615	2R_17377615_DEL [dm3] 2R_21490110_DEL [dm6]	TGCTTATAAACTT...	T	1.153e^-4	0.658	INTRON Fkbp14
2L	7975747	2L_7975747_SNP [dm3] 2L_7975747_SNP [dm6]	A	G	1.162e^-4	0.658	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19908963	2L_19908963_SNP [dm3] 2L_19908963_SNP [dm6]	C	T	1.164e^-4	0.658	SYNONYMOUS_CODING sick	TF binding site mE1_TFBS_chinmo
3R	12365045	3R_12365045_SNP [dm3] 3R_16539323_SNP [dm6]	T	C	1.164e^-4	0.658	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
4	442889	4_442889_DEL [dm3] 4_422263_DEL [dm6]	AA	T	1.167e^-4	0.658	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21378606	3R_21378606_SNP [dm3] 3R_25552884_SNP [dm6]	C	A	1.176e^-4	0.658	INTRON msi	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6693274	3L_6693274_SNP [dm3] 3L_6700174_SNP [dm6]	A	T	1.176e^-4	0.658	INTRON SP1173
2L	6842243	2L_6842243_SNP [dm3] 2L_6842243_SNP [dm6]	G	A	1.176e^-4	0.658	INTERGENIC
2L	5442547	2L_5442547_SNP [dm3] 2L_5442547_SNP [dm6]	C	T	1.181e^-4	0.658	INTERGENIC
3L	5569839	3L_5569839_SNP [dm3] 3L_5576739_SNP [dm6]	T	G	1.183e^-4	0.658	INTRON Msr-110
X	9584618	X_9584618_SNP [dm3] X_9690585_SNP [dm6]	C	T	1.187e^-4	0.658	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	18295612	3L_18295612_SNP [dm3] 3L_18302512_SNP [dm6]	T	C	1.189e^-4	0.658	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	19666772	X_19666772_SNP [dm3] X_19772739_SNP [dm6]	C	T	1.193e^-4	0.658	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1232566	2L_1232566_SNP [dm3] 2L_1232566_SNP [dm6]	A	G	1.194e^-4	0.658	INTERGENIC
2R	9217407	2R_9217407_SNP [dm3] 2R_13329902_SNP [dm6]	C	T	1.198e^-4	0.658	UPSTREAM mir-184 EXON CR44206
X	10906821	X_10906821_SNP [dm3] X_11012788_SNP [dm6]	T	A	1.198e^-4	0.658	INTRON CG42339
2R	14953540	2R_14953540_SNP [dm3] 2R_19066035_SNP [dm6]	C	A	1.205e^-4	0.658	INTERGENIC
2R	9613796	2R_9613796_SNP [dm3] 2R_13726291_SNP [dm6]	A	G	1.206e^-4	0.658	INTRON fas	TF binding site BDTNP1_TFBS_da
3L	18295590	3L_18295590_SNP [dm3] 3L_18302490_SNP [dm6]	A	T	1.214e^-4	0.658	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	3579042	3L_3579042_SNP [dm3] 3L_3579042_SNP [dm6]	A	G	1.214e^-4	0.658	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8989274	2L_8989274_SNP [dm3] 2L_8989274_SNP [dm6]	G	T	1.216e^-4	0.658	UTR_5_PRIME rost UPSTREAM rost INTRON rost
3L	5415755	3L_5415755_SNP [dm3] 3L_5422655_SNP [dm6]	C	A	1.217e^-4	0.658	INTERGENIC
2L	11237239	2L_11237239_SNP [dm3] 2L_11237239_SNP [dm6]	C	T	1.217e^-4	0.658	INTRON ab
3L	4580626	3L_4580626_SNP [dm3] 3L_4580626_SNP [dm6]	C	T	1.219e^-4	0.658	INTRON CG42540
2L	3457166	2L_3457166_SNP [dm3] 2L_3457166_SNP [dm6]	A	T	1.220e^-4	0.658	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	10676596	2R_10676596_SNP [dm3] 2R_14789091_SNP [dm6]	G	T	1.220e^-4	0.658	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7846982	2L_7846982_SNP [dm3] 2L_7846982_SNP [dm6]	T	A	1.224e^-4	0.658	NON_SYNONYMOUS_CODING CG14535
2R	6949149	2R_6949149_SNP [dm3] 2R_11061644_SNP [dm6]	T	G	1.227e^-4	0.658	INTRON luna
2R	10873234	2R_10873234_SNP [dm3] 2R_14985729_SNP [dm6]	T	G	1.230e^-4	0.658	INTRON pcs	TF binding site mE1_TFBS_cad
2L	8026294	2L_8026294_SNP [dm3] 2L_8026294_SNP [dm6]	T	C	1.232e^-4	0.658	SYNONYMOUS_CODING Tg DOWNSTREAM CG7367
2R	15001190	2R_15001190_INS [dm3] 2R_19113685_INS [dm6]	A	AA	1.236e^-4	0.658	INTRON 5-HT1A
2L	2358051	2L_2358051_SNP [dm3] 2L_2358051_SNP [dm6]	C	T	1.241e^-4	0.658	UTR_3_PRIME eys UPSTREAM CG9967
3L	12710752	3L_12710752_SNP [dm3] 3L_12717652_SNP [dm6]	G	A	1.245e^-4	0.658	INTERGENIC
2L	4033305	2L_4033305_SNP [dm3] 2L_4033305_SNP [dm6]	A	C	1.250e^-4	0.658	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10935810	2R_10935810_SNP [dm3] 2R_15048305_SNP [dm6]	C	G	1.251e^-4	0.658	INTERGENIC
2L	1039087	2L_1039087_SNP [dm3] 2L_1039087_SNP [dm6]	G	A	1.251e^-4	0.658	DOWNSTREAM CG4415 INTRON IA-2	TF binding site mE1_TFBS_chinmo
2R	14160216	2R_14160216_SNP [dm3] 2R_18272711_SNP [dm6]	T	A	1.255e^-4	0.658	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10614994	2R_10614994_DEL [dm3] 2R_14727489_DEL [dm6]	CCA	C	1.262e^-4	0.658	INTERGENIC
X	9471620	X_9471620_SNP [dm3] X_9577587_SNP [dm6]	G	T	1.271e^-4	0.658	INTRON CG32699
3L	4589675	3L_4589675_SNP [dm3] 3L_4589675_SNP [dm6]	T	C	1.273e^-4	0.658	INTRON CG42540
2R	15253959	2R_15253959_SNP [dm3] 2R_19366454_SNP [dm6]	T	A	1.275e^-4	0.658	DOWNSTREAM CG9416 INTRON CG10051
X	9585081	X_9585081_SNP [dm3] X_9691048_SNP [dm6]	T	A	1.277e^-4	0.658	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8701158	2R_8701158_SNP [dm3] 2R_12813653_SNP [dm6]	G	A	1.278e^-4	0.658	INTERGENIC
X	2822430	X_2822430_SNP [dm3] X_2928397_SNP [dm6]	A	T	1.280e^-4	0.658	INTRON kirre
3L	11519697	3L_11519697_SNP [dm3] 3L_11526597_SNP [dm6]	A	G	1.288e^-4	0.658	INTRON Mob2
3L	8722003	3L_8722003_SNP [dm3] 3L_8728903_SNP [dm6]	C	T	1.288e^-4	0.658	SYNONYMOUS_CODING Cp15 UPSTREAM Cp19
2L	17364852	2L_17364852_SNP [dm3] 2L_17364852_SNP [dm6]	T	C	1.292e^-4	0.658	DOWNSTREAM CG31804 INTERGENIC
2L	7057727	2L_7057727_SNP [dm3] 2L_7057727_SNP [dm6]	C	T	1.294e^-4	0.658	INTRON Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5150501	2L_5150501_SNP [dm3] 2L_5150501_SNP [dm6]	C	G	1.298e^-4	0.658	INTRON Msp300
2R	14160217	2R_14160217_SNP [dm3] 2R_18272712_SNP [dm6]	A	T	1.302e^-4	0.658	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13041185	2L_13041185_SNP [dm3] 2L_13041185_SNP [dm6]	G	A	1.307e^-4	0.658	INTRON CG9932
2R	5252263	2R_5252263_SNP [dm3] 2R_9364758_SNP [dm6]	C	T	1.318e^-4	0.658	INTRON CG13954
2L	19910559	2L_19910559_SNP [dm3] 2L_19910559_SNP [dm6]	C	A	1.321e^-4	0.658	DOWNSTREAM CR43097 INTRON sick
3R	4118919	3R_4118919_SNP [dm3] 3R_8293197_SNP [dm6]	C	G	1.321e^-4	0.658	NON_SYNONYMOUS_CODING CG31463 DOWNSTREAM CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	5212826	X_5212826_SNP [dm3] X_5318793_SNP [dm6]	T	G	1.322e^-4	0.658	UTR_3_PRIME Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo
2L	18350443	2L_18350443_SNP [dm3] 2L_18350443_SNP [dm6]	T	C	1.323e^-4	0.658	INTRON Fas3
3R	12365050	3R_12365050_DEL [dm3] 3R_16539328_DEL [dm6]	GTGTG	G	1.334e^-4	0.658	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6958615	2L_6958615_SNP [dm3] 2L_6958615_SNP [dm6]	A	T	1.339e^-4	0.658	DOWNSTREAM Atac1 INTRON CG3430
2L	9259902	2L_9259902_DEL [dm3] 2L_9259902_DEL [dm6]	CTCTTC	C	1.340e^-4	0.658	INTRON Ggamma30A
3R	15878668	3R_15878668_SNP [dm3] 3R_20052946_SNP [dm6]	T	A	1.344e^-4	0.658	INTRON CG17193	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	18419508	X_18419508_SNP [dm3] X_18525475_SNP [dm6]	A	G	1.348e^-4	0.658	INTRON Bx
2L	5712078	2L_5712078_SNP [dm3] 2L_5712078_SNP [dm6]	G	A	1.350e^-4	0.658	SYNONYMOUS_CODING CG7236 INTRON CG7236
2L	4843706	2L_4843706_SNP [dm3] 2L_4843706_SNP [dm6]	T	C	1.350e^-4	0.658	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	13526990	2R_13526990_SNP [dm3] 2R_17639485_SNP [dm6]	A	G	1.356e^-4	0.658	UPSTREAM CG10936 INTERGENIC
X	14286256	X_14286256_SNP [dm3] X_14392223_SNP [dm6]	A	T	1.357e^-4	0.658	INTRON dpr8
3R	2674924	3R_2674924_SNP [dm3] 3R_6849202_SNP [dm6]	G	T	1.358e^-4	0.658	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12419177	3L_12419177_SNP [dm3] 3L_12426077_SNP [dm6]	A	G	1.359e^-4	0.658	INTRON toe
X	8776699	X_8776699_INS [dm3] X_8882666_INS [dm6]	C	CAAAC	1.366e^-4	0.659	INTRON Moe
2L	3104515	2L_3104515_SNP [dm3] 2L_3104515_SNP [dm6]	G	A	1.371e^-4	0.659	INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7685466	X_7685466_SNP [dm3] X_7791433_SNP [dm6]	C	T	1.373e^-4	0.659	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	6531947	3L_6531947_SNP [dm3] 3L_6538847_SNP [dm6]	G	T	1.377e^-4	0.659	INTRON sfl
2R	10595653	2R_10595653_SNP [dm3] 2R_14708148_SNP [dm6]	A	G	1.378e^-4	0.659	INTRON mspo
3R	20822964	3R_20822964_SNP [dm3] 3R_24997242_SNP [dm6]	A	G	1.393e^-4	0.664	INTRON tnc	TF binding site mE1_TFBS_chinmo
3L	9159678	3L_9159678_INS [dm3] 3L_9166578_INS [dm6]	T	TT	1.397e^-4	0.664	INTRON Rdl
3L	11708590	3L_11708590_SNP [dm3] 3L_11715490_SNP [dm6]	G	A	1.399e^-4	0.664	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4340074	3R_4340074_SNP [dm3] 3R_8514352_SNP [dm6]	T	C	1.407e^-4	0.665	INTERGENIC
2L	10643725	2L_10643725_SNP [dm3] 2L_10643725_SNP [dm6]	A	G	1.408e^-4	0.665	UPSTREAM CG18284 DOWNSTREAM CG31872 INTERGENIC
2L	5866602	2L_5866602_DEL [dm3] 2L_5866602_DEL [dm6]	TT	T	1.420e^-4	0.665	INTRON rau	TF binding site BDTNP1_TFBS_da
3R	8983708	3R_8983708_SNP [dm3] 3R_13157986_SNP [dm6]	T	G	1.422e^-4	0.665	NON_SYNONYMOUS_CODING timeout
X	16545015	X_16545015_DEL [dm3] X_16650982_DEL [dm6]	ATTCAAGATAAAATTAACCT...	A	1.423e^-4	0.665	UPSTREAM CG32573 & 1 other DOWNSTREAM mthl1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2R	10585509	2R_10585509_SNP [dm3] 2R_14698004_SNP [dm6]	G	T	1.426e^-4	0.665	INTRON mspo
3R	16082541	3R_16082541_SNP [dm3] 3R_20256819_SNP [dm6]	T	A	1.427e^-4	0.665	INTRON cic
2L	14780722	2L_14780722_SNP [dm3] 2L_14780722_SNP [dm6]	C	A	1.431e^-4	0.665	DOWNSTREAM CR15280 INTERGENIC
2L	5800249	2L_5800249_SNP [dm3] 2L_5800249_SNP [dm6]	T	G	1.434e^-4	0.665	UTR_5_PRIME CG9171 UPSTREAM CG9171 DOWNSTREAM CG14005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10701426	2R_10701426_SNP [dm3] 2R_14813921_SNP [dm6]	G	A	1.441e^-4	0.665	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	13710402	2R_13710402_SNP [dm3] 2R_17822897_SNP [dm6]	A	G	1.443e^-4	0.665	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
3L	12489643	3L_12489643_SNP [dm3] 3L_12496543_SNP [dm6]	A	T	1.456e^-4	0.665	INTRON CG10657
X	10337684	X_10337684_SNP [dm3] X_10443651_SNP [dm6]	A	T	1.456e^-4	0.665	DOWNSTREAM snoRNA:Me28S-A1705 INTRON CG32683
2L	995905	2L_995905_SNP [dm3] 2L_995905_SNP [dm6]	A	G	1.459e^-4	0.665	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10692282	2R_10692282_SNP [dm3] 2R_14804777_SNP [dm6]	T	C	1.461e^-4	0.665	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	15878776	3R_15878776_SNP [dm3] 3R_20053054_SNP [dm6]	A	G	1.465e^-4	0.665	INTRON CG17193	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sbb
2R	8701515	2R_8701515_SNP [dm3] 2R_12814010_SNP [dm6]	T	C	1.467e^-4	0.665	INTERGENIC
3L	11640834	3L_11640834_SNP [dm3] 3L_11647734_SNP [dm6]	C	T	1.471e^-4	0.665	SYNONYMOUS_CODING RIOK1	TF binding site mE1_TFBS_sens
2R	15254259	2R_15254259_SNP [dm3] 2R_19366754_SNP [dm6]	G	T	1.475e^-4	0.665	DOWNSTREAM CG9416 INTRON CG10051
2R	10527883	2R_10527883_SNP [dm3] 2R_14640378_SNP [dm6]	A	G	1.478e^-4	0.665	NON_SYNONYMOUS_CODING CG12862 DOWNSTREAM CG42715	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15254526	2R_15254526_SNP [dm3] 2R_19367021_SNP [dm6]	G	T	1.479e^-4	0.665	SYNONYMOUS_CODING CG10051 DOWNSTREAM CG9416
3L	9376172	3L_9376172_SNP [dm3] 3L_9383072_SNP [dm6]	G	A	1.485e^-4	0.665	UPSTREAM Hsp27 DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13526861	2R_13526861_SNP [dm3] 2R_17639356_SNP [dm6]	T	A	1.486e^-4	0.665	UPSTREAM CG10936 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	7475262	2R_7475262_SNP [dm3] 2R_11587757_SNP [dm6]	C	A	1.493e^-4	0.665	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	17246588	2R_17246588_INS [dm3] 2R_21359083_INS [dm6]	T	TTT	1.498e^-4	0.665	SPLICE_SITE_REGION cv-2 INTRON cv-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20826203	2L_20826203_SNP [dm3] 2L_20826203_SNP [dm6]	T	A	1.498e^-4	0.665	INTRON CG9331	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2R	12204150	2R_12204150_SNP [dm3] 2R_16316645_SNP [dm6]	T	G	1.498e^-4	0.665	UTR_3_PRIME CG8060 DOWNSTREAM Nox
2L	7443146	2L_7443146_SNP [dm3] 2L_7443146_SNP [dm6]	T	A	1.500e^-4	0.665	UPSTREAM CG5973 INTRON CG5973
2L	7847831	2L_7847831_SNP [dm3] 2L_7847831_SNP [dm6]	A	G	1.518e^-4	0.665	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad
2R	6183371	2R_6183371_SNP [dm3] 2R_10295866_SNP [dm6]	C	T	1.519e^-4	0.665	SPLICE_SITE_REGION CAP INTRON CAP
2L	8389562	2L_8389562_SNP [dm3] 2L_8389562_SNP [dm6]	A	T	1.521e^-4	0.665	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2L	9385404	2L_9385404_SNP [dm3] 2L_9385404_SNP [dm6]	G	A	1.525e^-4	0.665	INTRON Shawl
2R	18381791	2R_18381791_SNP [dm3] 2R_22494286_SNP [dm6]	C	A	1.531e^-4	0.665	UTR_3_PRIME CG4610 DOWNSTREAM px	TF binding site mE1_TFBS_cad
3R	13766866	3R_13766866_SNP [dm3] 3R_17941144_SNP [dm6]	A	G	1.536e^-4	0.665	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12489665	3L_12489665_SNP [dm3] 3L_12496565_SNP [dm6]	A	C	1.536e^-4	0.665	INTRON CG10657
2L	1094905	2L_1094905_SNP [dm3] 2L_1094905_SNP [dm6]	C	A	1.540e^-4	0.665	INTRON CG4629
3L	6531971	3L_6531971_SNP [dm3] 3L_6538871_SNP [dm6]	A	T	1.540e^-4	0.665	INTRON sfl
3L	12261268	3L_12261268_SNP [dm3] 3L_12268168_SNP [dm6]	T	C	1.541e^-4	0.665	SYNONYMOUS_CODING CG32100	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15811503	3R_15811503_SNP [dm3] 3R_19985781_SNP [dm6]	T	C	1.549e^-4	0.665	INTRON Hs6st
2L	3669067	2L_3669067_SNP [dm3] 2L_3669067_SNP [dm6]	A	G	1.553e^-4	0.665	SYNONYMOUS_CODING CG42463 UPSTREAM Sfp24Ba DOWNSTREAM Sfp24Bb INTRON CG34340
2R	18051240	2R_18051240_MNP [dm3] 2R_22163735_MNP [dm6]	ACTAA	TGGTT	1.558e^-4	0.665	UTR_3_PRIME CG34206 DOWNSTREAM CG34206 INTRON a INTRAGENIC CG34206	TF binding site mE1_TFBS_cad
3L	14981522	3L_14981522_SNP [dm3] 3L_14988422_SNP [dm6]	G	A	1.561e^-4	0.665	INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10811701	3L_10811701_SNP [dm3] 3L_10818601_SNP [dm6]	G	A	1.562e^-4	0.665	INTERGENIC
2R	17181037	2R_17181037_SNP [dm3] 2R_21293532_SNP [dm6]	A	T	1.563e^-4	0.665	UTR_5_PRIME Sgf29 UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2R	7474360	2R_7474360_SNP [dm3] 2R_11586855_SNP [dm6]	C	T	1.564e^-4	0.665	SYNONYMOUS_CODING tou
2R	9176268	2R_9176268_SNP [dm3] 2R_13288763_SNP [dm6]	A	T	1.566e^-4	0.665	INTRON Dh31-R
X	5609406	X_5609406_SNP [dm3] X_5715373_SNP [dm6]	C	A	1.574e^-4	0.665	UTR_5_PRIME CG33080 INTRON CG33080
3L	18295617	3L_18295617_SNP [dm3] 3L_18302517_SNP [dm6]	T	A	1.577e^-4	0.665	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	12598575	2R_12598575_SNP [dm3] 2R_16711070_SNP [dm6]	T	C	1.580e^-4	0.665	INTRON CG30463
2R	9504085	2R_9504085_SNP [dm3] 2R_13616580_SNP [dm6]	A	T	1.582e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11164117	X_11164117_SNP [dm3] X_11270084_SNP [dm6]	T	C	1.587e^-4	0.665	INTRON CG44422
X	2325885	X_2325885_SNP [dm3] X_2431852_SNP [dm6]	T	C	1.588e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	7685467	X_7685467_SNP [dm3] X_7791434_SNP [dm6]	C	T	1.593e^-4	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	10621433	2R_10621433_SNP [dm3] 2R_14733928_SNP [dm6]	T	A	1.597e^-4	0.665	INTERGENIC
3R	2674345	3R_2674345_SNP [dm3] 3R_6848623_SNP [dm6]	A	G	1.599e^-4	0.665	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14396126	2R_14396126_SNP [dm3] 2R_18508621_SNP [dm6]	G	C	1.604e^-4	0.665	INTERGENIC
2L	9123580	2L_9123580_SNP [dm3] 2L_9123580_SNP [dm6]	A	C	1.605e^-4	0.665	UPSTREAM CR44615 INTERGENIC
2R	14157475	2R_14157475_SNP [dm3] 2R_18269970_SNP [dm6]	C	T	1.606e^-4	0.665	INTERGENIC
2R	13527251	2R_13527251_SNP [dm3] 2R_17639746_SNP [dm6]	C	A	1.622e^-4	0.668	UPSTREAM CG10936 INTERGENIC
X	19589712	X_19589712_SNP [dm3] X_19695679_SNP [dm6]	C	T	1.624e^-4	0.668	UPSTREAM CG14229 INTERGENIC	transposable element FlyBase
X	11199003	X_11199003_DEL [dm3] X_11304970_DEL [dm6]	AA	A	1.628e^-4	0.668	INTERGENIC
2L	7910486	2L_7910486_SNP [dm3] 2L_7910486_SNP [dm6]	C	T	1.628e^-4	0.668	INTRON Snoo
2L	19912392	2L_19912392_DEL [dm3] 2L_19912392_DEL [dm6]	AA	A	1.638e^-4	0.67	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
3R	2680255	3R_2680255_SNP [dm3] 3R_6854533_SNP [dm6]	C	T	1.640e^-4	0.67	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	17378260	2R_17378260_INS [dm3] 2R_21490755_INS [dm6]	T	TGTTGTTTATTT...	1.650e^-4	0.671	INTRON Fkbp14
3R	8071277	3R_8071277_SNP [dm3] 3R_12245555_SNP [dm6]	A	G	1.657e^-4	0.671	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	885475	3L_885475_SNP [dm3] 3L_885475_SNP [dm6]	T	C	1.660e^-4	0.671	INTRON CG32479
3L	4589536	3L_4589536_SNP [dm3] 3L_4589536_SNP [dm6]	C	A	1.663e^-4	0.671	INTRON CG42540
2L	5868800	2L_5868800_SNP [dm3] 2L_5868800_SNP [dm6]	T	C	1.663e^-4	0.671	INTRON rau
3R	15603620	3R_15603620_SNP [dm3] 3R_19777898_SNP [dm6]	T	A	1.664e^-4	0.671	UPSTREAM CG11659 & 1 other INTERGENIC
2R	15254301	2R_15254301_SNP [dm3] 2R_19366796_SNP [dm6]	T	C	1.681e^-4	0.673	SYNONYMOUS_CODING CG10051 DOWNSTREAM CG9416
3L	6532525	3L_6532525_SNP [dm3] 3L_6539425_SNP [dm6]	T	A	1.682e^-4	0.673	INTRON sfl
3R	5572462	3R_5572462_SNP [dm3] 3R_9746740_SNP [dm6]	C	G	1.683e^-4	0.673	SYNONYMOUS_CODING CG12948 UPSTREAM CG34409	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8655576	X_8655576_SNP [dm3] X_8761543_SNP [dm6]	C	T	1.690e^-4	0.673	INTRON Lim1
2L	3183084	2L_3183084_SNP [dm3] 2L_3183084_SNP [dm6]	T	C	1.700e^-4	0.673	INTRON CG34393
3R	15603804	3R_15603804_SNP [dm3] 3R_19778082_SNP [dm6]	A	C	1.708e^-4	0.673	UPSTREAM CG11659 & 1 other INTERGENIC
2L	12808320	2L_12808320_SNP [dm3] 2L_12808320_SNP [dm6]	C	A	1.712e^-4	0.673	EXON CR43818
2R	14156484	2R_14156484_SNP [dm3] 2R_18268979_SNP [dm6]	T	A	1.714e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8730976	2R_8730976_SNP [dm3] 2R_12843471_SNP [dm6]	G	A	1.714e^-4	0.673	SYNONYMOUS_CODING Or49b UPSTREAM Cyp9h1	TF binding site BDTNP1_TFBS_twi
2R	10846124	2R_10846124_SNP [dm3] 2R_14958619_SNP [dm6]	T	C	1.723e^-4	0.673	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10715639	2R_10715639_SNP [dm3] 2R_14828134_SNP [dm6]	A	T	1.724e^-4	0.673	INTERGENIC
2R	10705677	2R_10705677_SNP [dm3] 2R_14818172_SNP [dm6]	G	T	1.726e^-4	0.673	NON_SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10719564	2R_10719564_SNP [dm3] 2R_14832059_SNP [dm6]	G	A	1.726e^-4	0.673	UPSTREAM CG10205 INTERGENIC
2R	10672683	2R_10672683_SNP [dm3] 2R_14785178_SNP [dm6]	C	A	1.730e^-4	0.673	INTRON kn
2L	6005555	2L_6005555_SNP [dm3] 2L_6005555_SNP [dm6]	G	A	1.739e^-4	0.673	SPLICE_SITE_REGION Gal INTRON Gal EXON CR43866	TF binding site mE1_TFBS_cad
3L	18295569	3L_18295569_SNP [dm3] 3L_18302469_SNP [dm6]	T	C	1.741e^-4	0.673	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	2577527	3L_2577527_SNP [dm3] 3L_2577527_SNP [dm6]	T	A	1.745e^-4	0.673	INTRON msn	regulatory region REDfly_CRMs
2R	12035599	2R_12035599_SNP [dm3] 2R_16148094_SNP [dm6]	G	T	1.757e^-4	0.673	SYNONYMOUS_CODING Ext2 DOWNSTREAM CG10731	TF binding site mE1_TFBS_sens
2R	10692276	2R_10692276_SNP [dm3] 2R_14804771_SNP [dm6]	A	G	1.762e^-4	0.673	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	9176330	2R_9176330_SNP [dm3] 2R_13288825_SNP [dm6]	A	T	1.763e^-4	0.673	INTRON Dh31-R
3L	12502549	3L_12502549_SNP [dm3] 3L_12509449_SNP [dm6]	C	T	1.763e^-4	0.673	SYNONYMOUS_CODING sti	TF binding site mE1_TFBS_sens
2R	10711850	2R_10711850_DEL [dm3] 2R_14824345_DEL [dm6]	AA	A	1.765e^-4	0.673	EXON CR45329
3R	4345038	3R_4345038_SNP [dm3] 3R_8519316_SNP [dm6]	G	T	1.765e^-4	0.673	INTRON CG11737
2R	17182141	2R_17182141_SNP [dm3] 2R_21294636_SNP [dm6]	C	A	1.768e^-4	0.673	SYNONYMOUS_CODING CG9752 UPSTREAM Sgf29 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	9971927	2R_9971927_SNP [dm3] 2R_14084422_SNP [dm6]	A	T	1.771e^-4	0.673	INTRON Prosap	TF binding site mE1_TFBS_bab1
3R	14715439	3R_14715439_SNP [dm3] 3R_18889717_SNP [dm6]	A	C	1.777e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9624869	2R_9624869_SNP [dm3] 2R_13737364_SNP [dm6]	A	C	1.778e^-4	0.673	INTRON fas
3R	12947598	3R_12947598_SNP [dm3] 3R_17121876_SNP [dm6]	C	G	1.785e^-4	0.673	UTR_3_PRIME CG42779 DOWNSTREAM CG42779 INTRON cher	TF binding site mE1_TFBS_inv
3L	11338090	3L_11338090_SNP [dm3] 3L_11344990_SNP [dm6]	T	C	1.785e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17824035	3R_17824035_SNP [dm3] 3R_21998313_SNP [dm6]	A	G	1.786e^-4	0.673	INTRON Eip93F
2R	13527068	2R_13527068_SNP [dm3] 2R_17639563_SNP [dm6]	G	T	1.789e^-4	0.673	UPSTREAM CG10936 INTERGENIC
2L	17937494	2L_17937494_SNP [dm3] 2L_17937494_SNP [dm6]	C	G	1.793e^-4	0.673	INTERGENIC
2L	19912387	2L_19912387_SNP [dm3] 2L_19912387_SNP [dm6]	T	A	1.793e^-4	0.673	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
2R	15254091	2R_15254091_SNP [dm3] 2R_19366586_SNP [dm6]	A	G	1.795e^-4	0.673	SYNONYMOUS_CODING CG10051 DOWNSTREAM CG9416
2R	10786021	2R_10786021_SNP [dm3] 2R_14898516_SNP [dm6]	C	T	1.796e^-4	0.673	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	5800315	2L_5800315_SNP [dm3] 2L_5800315_SNP [dm6]	A	G	1.802e^-4	0.673	UPSTREAM CG9171 DOWNSTREAM CG14005 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5868088	2L_5868088_SNP [dm3] 2L_5868088_SNP [dm6]	G	A	1.807e^-4	0.673	INTRON rau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19907175	2L_19907175_SNP [dm3] 2L_19907175_SNP [dm6]	T	C	1.813e^-4	0.673	INTRON sick
X	4911814	X_4911814_SNP [dm3] X_5017781_SNP [dm6]	G	A	1.815e^-4	0.673	INTRON CR44833	TF binding site mE1_TFBS_inv
2R	9793018	2R_9793018_SNP [dm3] 2R_13905513_SNP [dm6]	A	T	1.826e^-4	0.673	INTRON shot
3R	14754591	3R_14754591_SNP [dm3] 3R_18928869_SNP [dm6]	A	G	1.828e^-4	0.673	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14452105	2L_14452105_SNP [dm3] 2L_14452105_SNP [dm6]	A	G	1.835e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10676540	2R_10676540_SNP [dm3] 2R_14789035_SNP [dm6]	C	T	1.837e^-4	0.673	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10713301	2R_10713301_SNP [dm3] 2R_14825796_SNP [dm6]	T	G	1.843e^-4	0.673	INTERGENIC
2R	13828089	2R_13828089_SNP [dm3] 2R_17940584_SNP [dm6]	T	A	1.845e^-4	0.673	INTERGENIC
X	9800331	X_9800331_SNP [dm3] X_9906298_SNP [dm6]	C	A	1.849e^-4	0.673	INTERGENIC
2L	3457183	2L_3457183_SNP [dm3] 2L_3457183_SNP [dm6]	A	T	1.851e^-4	0.673	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	18479087	X_18479087_SNP [dm3] X_18585054_SNP [dm6]	T	A	1.854e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15254241	2R_15254241_SNP [dm3] 2R_19366736_SNP [dm6]	C	G	1.859e^-4	0.673	DOWNSTREAM CG9416 INTRON CG10051
3L	4589633	3L_4589633_SNP [dm3] 3L_4589633_SNP [dm6]	G	T	1.859e^-4	0.673	INTRON CG42540
2R	16036628	2R_16036628_SNP [dm3] 2R_20149123_SNP [dm6]	T	C	1.861e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5847555	3R_5847555_SNP [dm3] 3R_10021833_SNP [dm6]	C	T	1.863e^-4	0.673	UTR_5_PRIME Mical UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_inv
3L	12411561	3L_12411561_SNP [dm3] 3L_12418461_SNP [dm6]	C	T	1.866e^-4	0.673	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
X	8811161	X_8811161_SNP [dm3] X_8917128_SNP [dm6]	A	G	1.870e^-4	0.673	INTRON rdgA
2L	14438138	2L_14438138_SNP [dm3] 2L_14438138_SNP [dm6]	G	A	1.877e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7753083	2L_7753083_SNP [dm3] 2L_7753083_SNP [dm6]	G	A	1.882e^-4	0.673	UPSTREAM CR45718 INTRON CG7203
2L	5858489	2L_5858489_SNP [dm3] 2L_5858489_SNP [dm6]	A	G	1.886e^-4	0.673	INTERGENIC
3R	14754641	3R_14754641_SNP [dm3] 3R_18928919_SNP [dm6]	A	G	1.896e^-4	0.673	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7685447	X_7685447_SNP [dm3] X_7791414_SNP [dm6]	C	G	1.897e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	4524977	X_4524977_SNP [dm3] X_4630944_SNP [dm6]	G	T	1.899e^-4	0.673	UPSTREAM CG12184 DOWNSTREAM CG12179 INTERGENIC
2R	10153715	2R_10153715_SNP [dm3] 2R_14266210_SNP [dm6]	A	T	1.909e^-4	0.673	INTRON CG8547
3R	26764213	3R_26764213_SNP [dm3] 3R_30938491_SNP [dm6]	G	T	1.910e^-4	0.673	INTERGENIC
3R	15604103	3R_15604103_SNP [dm3] 3R_19778381_SNP [dm6]	G	A	1.911e^-4	0.673	UPSTREAM CG11391 INTERGENIC
3R	2674433	3R_2674433_SNP [dm3] 3R_6848711_SNP [dm6]	C	T	1.912e^-4	0.673	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10152110	2R_10152110_SNP [dm3] 2R_14264605_SNP [dm6]	T	C	1.919e^-4	0.673	INTRON CG8547	TF binding site mE1_TFBS_cad
3R	14345445	3R_14345445_SNP [dm3] 3R_18519723_SNP [dm6]	T	A	1.920e^-4	0.673	INTRON fru
3L	12431239	3L_12431239_SNP [dm3] 3L_12438139_SNP [dm6]	A	G	1.926e^-4	0.673	INTERGENIC
2L	4843704	2L_4843704_SNP [dm3] 2L_4843704_SNP [dm6]	G	C	1.928e^-4	0.673	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	20260743	2L_20260743_SNP [dm3] 2L_20260743_SNP [dm6]	C	T	1.930e^-4	0.673	INTERGENIC
2L	1094900	2L_1094900_SNP [dm3] 2L_1094900_SNP [dm6]	C	T	1.932e^-4	0.673	INTRON CG4629
3L	4378226	3L_4378226_SNP [dm3] 3L_4378226_SNP [dm6]	C	T	1.933e^-4	0.673	UPSTREAM CR44360 INTRON DopEcR
2L	4845583	2L_4845583_SNP [dm3] 2L_4845583_SNP [dm6]	G	A	1.938e^-4	0.673	SPLICE_SITE_REGION mxt INTRON mxt	TF binding site mE1_TFBS_chinmo
2R	12434445	2R_12434445_SNP [dm3] 2R_16546940_SNP [dm6]	T	G	1.939e^-4	0.673	INTERGENIC
3R	22554275	3R_22554275_SNP [dm3] 3R_26728553_SNP [dm6]	G	A	1.941e^-4	0.673	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25318504	3R_25318504_SNP [dm3] 3R_29492782_SNP [dm6]	A	C	1.952e^-4	0.673	INTRON CG2310	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_zfh1
3L	501811	3L_501811_SNP [dm3] 3L_501811_SNP [dm6]	T	C	1.955e^-4	0.673	DOWNSTREAM CG34268 INTRON klar
2L	3454623	2L_3454623_SNP [dm3] 2L_3454623_SNP [dm6]	T	G	1.962e^-4	0.673	NON_SYNONYMOUS_CODING Cog3 DOWNSTREAM CG12795
2L	2351148	2L_2351148_SNP [dm3] 2L_2351148_SNP [dm6]	T	A	1.967e^-4	0.673	INTRON CG9967 & 1 other
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	1.970e^-4	0.673	INTRON CG31690
2L	11237243	2L_11237243_SNP [dm3] 2L_11237243_SNP [dm6]	C	T	1.972e^-4	0.673	INTRON ab
2L	18730872	2L_18730872_SNP [dm3] 2L_18730872_SNP [dm6]	G	T	1.972e^-4	0.673	INTRON CG10348
X	8414118	X_8414118_SNP [dm3] X_8520085_SNP [dm6]	C	A	1.973e^-4	0.673	INTRON Nrg
2L	8390736	2L_8390736_SNP [dm3] 2L_8390736_SNP [dm6]	C	T	1.973e^-4	0.673	SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5573266	3L_5573266_SNP [dm3] 3L_5580166_SNP [dm6]	G	C	1.978e^-4	0.673	INTERGENIC
2R	5972469	2R_5972469_SNP [dm3] 2R_10084964_SNP [dm6]	G	A	1.980e^-4	0.673	UPSTREAM CG2269 DOWNSTREAM egr & 1 other INTERGENIC
3L	12481414	3L_12481414_SNP [dm3] 3L_12488314_SNP [dm6]	T	A	1.980e^-4	0.673	INTRON CG10660
2R	1329009	2R_1329009_SNP [dm3] 2R_5441504_SNP [dm6]	T	A	1.984e^-4	0.673	INTRON laccase2
2R	10786028	2R_10786028_SNP [dm3] 2R_14898523_SNP [dm6]	G	A	1.986e^-4	0.673	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	9063578	X_9063578_SNP [dm3] X_9169545_SNP [dm6]	C	T	1.989e^-4	0.673	SYNONYMOUS_CODING mei-P26	TF binding site mE1_TFBS_HSA
2L	4843699	2L_4843699_SNP [dm3] 2L_4843699_SNP [dm6]	A	G	1.994e^-4	0.674	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	13720887	3L_13720887_SNP [dm3] 3L_13727787_SNP [dm6]	C	A	2.000e^-4	0.675	INTRON bru-3
3L	8437309	3L_8437309_SNP [dm3] 3L_8444209_SNP [dm6]	T	C	2.005e^-4	0.675	SYNONYMOUS_CODING CG6983	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	17488728	X_17488728_SNP [dm3] X_17594695_SNP [dm6]	T	C	2.021e^-4	0.675	INTRON CG12991
2L	9385392	2L_9385392_SNP [dm3] 2L_9385392_SNP [dm6]	T	A	2.022e^-4	0.675	INTRON Shawl
2R	10700525	2R_10700525_SNP [dm3] 2R_14813020_SNP [dm6]	G	A	2.026e^-4	0.675	INTERGENIC	regulatory region REDfly_CRMs
3L	10740263	3L_10740263_SNP [dm3] 3L_10747163_SNP [dm6]	A	G	2.036e^-4	0.675	INTERGENIC
X	8414123	X_8414123_INS [dm3] X_8520090_INS [dm6]	T	TC	2.038e^-4	0.675	INTRON Nrg
X	18461523	X_18461523_SNP [dm3] X_18567490_SNP [dm6]	G	A	2.039e^-4	0.675	INTRON Bx
3L	22655351	3L_22655351_SNP [dm3] 3L_22662251_SNP [dm6]	G	A	2.045e^-4	0.675	INTERGENIC
2L	7975684	2L_7975684_SNP [dm3] 2L_7975684_SNP [dm6]	A	G	2.046e^-4	0.675	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5615843	X_5615843_SNP [dm3] X_5721810_SNP [dm6]	A	T	2.047e^-4	0.675	INTRON CG32758
3R	15877380	3R_15877380_SNP [dm3] 3R_20051658_SNP [dm6]	T	A	2.052e^-4	0.675	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
3R	15603783	3R_15603783_SNP [dm3] 3R_19778061_SNP [dm6]	A	G	2.060e^-4	0.675	UPSTREAM CG11659 & 1 other INTERGENIC
2R	8427215	2R_8427215_SNP [dm3] 2R_12539710_SNP [dm6]	A	T	2.065e^-4	0.675	INTRON fra	TF binding site mE1_TFBS_cad
2R	12598613	2R_12598613_INS [dm3] 2R_16711108_INS [dm6]	T	TGAATACCACATTT...	2.072e^-4	0.675	INTRON CG30463
2R	12598620	2R_12598620_SNP [dm3] 2R_16711115_SNP [dm6]	A	C	2.072e^-4	0.675	INTRON CG30463
2L	19326602	2L_19326602_SNP [dm3] 2L_19326602_SNP [dm6]	A	C	2.073e^-4	0.675	UPSTREAM CR45258 DOWNSTREAM CR45700 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	9753820	3L_9753820_SNP [dm3] 3L_9760720_SNP [dm6]	A	T	2.075e^-4	0.675	UPSTREAM CR45407 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	18731011	2L_18731011_INS [dm3] 2L_18731011_INS [dm6]	G	GTTG	2.077e^-4	0.675	UTR_5_PRIME CG10348
2R	5971493	2R_5971493_SNP [dm3] 2R_10083988_SNP [dm6]	T	A	2.079e^-4	0.675	UTR_3_PRIME egr
2L	9258652	2L_9258652_SNP [dm3] 2L_9258652_SNP [dm6]	A	T	2.082e^-4	0.675	INTRON Ggamma30A
X	9829086	X_9829086_SNP [dm3] X_9935053_SNP [dm6]	A	T	2.083e^-4	0.675	INTERGENIC
3L	12487398	3L_12487398_SNP [dm3] 3L_12494298_SNP [dm6]	C	A	2.083e^-4	0.675	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13305595	2L_13305595_SNP [dm3] 2L_13305595_SNP [dm6]	C	T	2.086e^-4	0.675	UTR_5_PRIME CG16825 UPSTREAM CG16825 DOWNSTREAM CG43779 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10721948	2R_10721948_SNP [dm3] 2R_14834443_SNP [dm6]	C	A	2.091e^-4	0.675	DOWNSTREAM CG10205 INTERGENIC
3R	15603817	3R_15603817_SNP [dm3] 3R_19778095_SNP [dm6]	C	A	2.098e^-4	0.675	UPSTREAM CG11659 & 1 other INTERGENIC
2R	14678048	2R_14678048_SNP [dm3] 2R_18790543_SNP [dm6]	A	T	2.102e^-4	0.675	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
3L	13976763	3L_13976763_SNP [dm3] 3L_13983663_SNP [dm6]	T	C	2.105e^-4	0.675	INTRON CG17364
2L	9331690	2L_9331690_SNP [dm3] 2L_9331690_SNP [dm6]	T	C	2.106e^-4	0.675	UTR_3_PRIME Cks30A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2694886	2L_2694886_SNP [dm3] 2L_2694886_SNP [dm6]	G	T	2.107e^-4	0.675	DOWNSTREAM CG15398 INTRON CG31690
2L	16541845	2L_16541845_SNP [dm3] 2L_16541845_SNP [dm6]	G	C	2.112e^-4	0.676	UPSTREAM CG31816 INTERGENIC
2L	7967558	2L_7967558_SNP [dm3] 2L_7967558_SNP [dm6]	A	G	2.116e^-4	0.676	INTRON Snoo
2R	16288134	2R_16288134_SNP [dm3] 2R_20400629_SNP [dm6]	C	T	2.132e^-4	0.679	INTERGENIC
3R	4132705	3R_4132705_SNP [dm3] 3R_8306983_SNP [dm6]	T	G	2.135e^-4	0.679	DOWNSTREAM tex INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17074059	X_17074059_DEL [dm3] X_17180026_DEL [dm6]	AA	A	2.140e^-4	0.679	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5970173	2R_5970173_SNP [dm3] 2R_10082668_SNP [dm6]	A	C	2.143e^-4	0.679	SYNONYMOUS_CODING egr	TF binding site mE1_TFBS_HSA
X	4561087	X_4561087_SNP [dm3] X_4667054_SNP [dm6]	C	G	2.144e^-4	0.679	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2L	14435148	2L_14435148_SNP [dm3] 2L_14435148_SNP [dm6]	T	A	2.148e^-4	0.679	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco
3L	4589562	3L_4589562_DEL [dm3] 3L_4589562_DEL [dm6]	GTAAATG	A	2.152e^-4	0.679	INTRON CG42540
2L	13334840	2L_13334840_SNP [dm3] 2L_13334840_SNP [dm6]	T	C	2.156e^-4	0.68	INTERGENIC
2L	9123552	2L_9123552_SNP [dm3] 2L_9123552_SNP [dm6]	A	C	2.167e^-4	0.681	UPSTREAM CR44615 INTERGENIC
3R	21378597	3R_21378597_SNP [dm3] 3R_25552875_SNP [dm6]	G	T	2.174e^-4	0.681	INTRON msi	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7752871	2L_7752871_SNP [dm3] 2L_7752871_SNP [dm6]	T	C	2.175e^-4	0.681	UPSTREAM CR45718 INTRON CG7203
3L	13976765	3L_13976765_SNP [dm3] 3L_13983665_SNP [dm6]	G	A	2.178e^-4	0.681	INTRON CG17364
3L	11066812	3L_11066812_SNP [dm3] 3L_11073712_SNP [dm6]	C	T	2.182e^-4	0.681	SYNONYMOUS_STOP l_3_01239 DOWNSTREAM Mocs1	TF binding site mE1_TFBS_sens
2L	15623358	2L_15623358_SNP [dm3] 2L_15623358_SNP [dm6]	G	A	2.183e^-4	0.681	SYNONYMOUS_CODING Or35a
3R	15877779	3R_15877779_SNP [dm3] 3R_20052057_SNP [dm6]	T	A	2.193e^-4	0.683	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
X	4189837	X_4189837_SNP [dm3] X_4295804_SNP [dm6]	T	C	2.200e^-4	0.684	INTERGENIC
2R	7315344	2R_7315344_SNP [dm3] 2R_11427839_SNP [dm6]	G	T	2.219e^-4	0.688	UPSTREAM Drip INTRON Drip
3L	11338106	3L_11338106_SNP [dm3] 3L_11345006_SNP [dm6]	G	A	2.224e^-4	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6531960	3L_6531960_SNP [dm3] 3L_6538860_SNP [dm6]	A	G	2.225e^-4	0.688	INTRON sfl
3L	10659603	3L_10659603_SNP [dm3] 3L_10666503_SNP [dm6]	A	G	2.226e^-4	0.688	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3097023	2L_3097023_SNP [dm3] 2L_3097023_SNP [dm6]	G	A	2.234e^-4	0.689	INTRON toc
2L	17141808	2L_17141808_SNP [dm3] 2L_17141808_SNP [dm6]	A	T	2.244e^-4	0.689	INTRON beat-IIIa & 1 other
2R	18643936	2R_18643936_SNP [dm3] 2R_22756431_SNP [dm6]	G	A	2.244e^-4	0.689	DOWNSTREAM CG13526 INTRON CG42260 EXON CR30267
2R	7467531	2R_7467531_SNP [dm3] 2R_11580026_SNP [dm6]	A	T	2.248e^-4	0.689	INTRON tou
2R	7467537	2R_7467537_SNP [dm3] 2R_11580032_SNP [dm6]	T	A	2.248e^-4	0.689	INTRON tou
2R	12692867	2R_12692867_SNP [dm3] 2R_16805362_SNP [dm6]	C	T	2.252e^-4	0.689	INTERGENIC
2R	10265183	2R_10265183_SNP [dm3] 2R_14377678_SNP [dm6]	T	C	2.264e^-4	0.689	UPSTREAM Dh44-R1 INTERGENIC
2R	10608268	2R_10608268_SNP [dm3] 2R_14720763_SNP [dm6]	T	C	2.269e^-4	0.689	INTERGENIC
2R	7475118	2R_7475118_SNP [dm3] 2R_11587613_SNP [dm6]	G	T	2.273e^-4	0.689	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	6000969	2L_6000969_SNP [dm3] 2L_6000969_SNP [dm6]	T	C	2.273e^-4	0.689	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4589591	3L_4589591_SNP [dm3] 3L_4589591_SNP [dm6]	G	T	2.275e^-4	0.689	INTRON CG42540
2L	6525614	2L_6525614_SNP [dm3] 2L_6525614_SNP [dm6]	A	T	2.278e^-4	0.689	SPLICE_SITE_REGION CG31637 INTRON CG31637	TF binding site mE1_TFBS_sens
X	19620018	X_19620018_SNP [dm3] X_19725985_SNP [dm6]	C	T	2.284e^-4	0.689	INTRON CG12531
3R	25600877	3R_25600877_SNP [dm3] 3R_29775155_SNP [dm6]	C	T	2.285e^-4	0.689	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6000512	2L_6000512_SNP [dm3] 2L_6000512_SNP [dm6]	C	G	2.289e^-4	0.689	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	20463054	2R_20463054_SNP [dm3] 2R_24575531_SNP [dm6]	G	C	2.294e^-4	0.689	UPSTREAM Start1 INTRON Start1
3L	10418335	3L_10418335_SNP [dm3] 3L_10425235_SNP [dm6]	T	G	2.298e^-4	0.689	INTERGENIC
3R	27372937	3R_27372937_SNP [dm3] 3R_31547215_SNP [dm6]	C	A	2.300e^-4	0.689	INTRON nyo
2L	8321174	2L_8321174_SNP [dm3] 2L_8321174_SNP [dm6]	G	A	2.302e^-4	0.689	UTR_3_PRIME CG7787 DOWNSTREAM CG7781	TF binding site mE1_TFBS_ttk
2L	19313513	2L_19313513_SNP [dm3] 2L_19313513_SNP [dm6]	G	T	2.309e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18295632	3L_18295632_SNP [dm3] 3L_18302532_SNP [dm6]	A	T	2.316e^-4	0.689	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	3271738	2L_3271738_SNP [dm3] 2L_3271738_SNP [dm6]	T	C	2.316e^-4	0.689	UTR_3_PRIME CG3347
3R	15880408	3R_15880408_INS [dm3] 3R_20054686_INS [dm6]	A	AATAAATAAA	2.318e^-4	0.689	UPSTREAM CG17193 INTRON CG17193	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12999725	2R_12999725_SNP [dm3] 2R_17112220_SNP [dm6]	C	G	2.320e^-4	0.689	INTRON CG15611
2R	11957750	2R_11957750_SNP [dm3] 2R_16070245_SNP [dm6]	G	A	2.323e^-4	0.689	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16062948	2R_16062948_SNP [dm3] 2R_20175443_SNP [dm6]	A	T	2.327e^-4	0.689	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15877853	3R_15877853_SNP [dm3] 3R_20052131_SNP [dm6]	A	C	2.330e^-4	0.689	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	5710054	2L_5710054_SNP [dm3] 2L_5710054_SNP [dm6]	C	G	2.341e^-4	0.691	UTR_5_PRIME CG7236 INTRON CG7236
2L	14253818	2L_14253818_SNP [dm3] 2L_14253818_SNP [dm6]	G	A	2.342e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10749489	2R_10749489_SNP [dm3] 2R_14861984_SNP [dm6]	C	T	2.348e^-4	0.691	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4100670	3L_4100670_SNP [dm3] 3L_4100670_SNP [dm6]	T	C	2.377e^-4	0.692	INTRON CG14995
2L	11728644	2L_11728644_SNP [dm3] 2L_11728644_SNP [dm6]	G	A	2.385e^-4	0.692	INTERGENIC
2R	17240031	2R_17240031_SNP [dm3] 2R_21352526_SNP [dm6]	A	T	2.387e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7467577	2R_7467577_SNP [dm3] 2R_11580072_SNP [dm6]	G	T	2.395e^-4	0.692	SYNONYMOUS_CODING tou
2L	1384912	2L_1384912_SNP [dm3] 2L_1384912_SNP [dm6]	C	G	2.401e^-4	0.692	INTRON lea
2L	8293295	2L_8293295_SNP [dm3] 2L_8293295_SNP [dm6]	G	A	2.404e^-4	0.692	INTRON Btk29A
3R	22549387	3R_22549387_SNP [dm3] 3R_26723665_SNP [dm6]	T	G	2.404e^-4	0.692	INTRON CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1037040	2L_1037040_SNP [dm3] 2L_1037040_SNP [dm6]	T	C	2.413e^-4	0.692	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	13438066	3R_13438066_SNP [dm3] 3R_17612344_SNP [dm6]	C	T	2.414e^-4	0.692	UPSTREAM Edg91 & 1 other INTERGENIC
3L	4589774	3L_4589774_SNP [dm3] 3L_4589774_SNP [dm6]	A	G	2.415e^-4	0.692	INTRON CG42540	TF binding site mE1_TFBS_chinmo
3L	5718032	3L_5718032_SNP [dm3] 3L_5724932_SNP [dm6]	G	T	2.423e^-4	0.692	INTRON sif
2R	17392613	2R_17392613_DEL [dm3] 2R_21505108_DEL [dm6]	ACATA	A	2.436e^-4	0.692	INTRON MESK2
2R	15254213	2R_15254213_SNP [dm3] 2R_19366708_SNP [dm6]	G	A	2.438e^-4	0.692	DOWNSTREAM CG9416 INTRON CG10051
X	20259313	X_20259313_INS [dm3] X_20388286_INS [dm6]	A	ACATA	2.439e^-4	0.692	INTERGENIC
2L	1891774	2L_1891774_SNP [dm3] 2L_1891774_SNP [dm6]	T	A	2.443e^-4	0.692	INTRON CG7337
X	12291012	X_12291012_SNP [dm3] X_12396979_SNP [dm6]	A	G	2.444e^-4	0.692	INTERGENIC
3R	12872450	3R_12872450_SNP [dm3] 3R_17046728_SNP [dm6]	C	T	2.451e^-4	0.692	SYNONYMOUS_CODING Patr-1
2L	14434893	2L_14434893_SNP [dm3] 2L_14434893_SNP [dm6]	G	A	2.454e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4589371	3L_4589371_SNP [dm3] 3L_4589371_SNP [dm6]	C	T	2.460e^-4	0.692	INTRON CG42540
2R	17245533	2R_17245533_SNP [dm3] 2R_21358028_SNP [dm6]	G	A	2.470e^-4	0.692	SYNONYMOUS_CODING cv-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3326449	X_3326449_SNP [dm3] X_3432416_SNP [dm6]	T	C	2.470e^-4	0.692	INTRON CR44999 & 1 other
2L	2685245	2L_2685245_SNP [dm3] 2L_2685245_SNP [dm6]	T	C	2.472e^-4	0.692	INTRON CG31690
3L	12480965	3L_12480965_SNP [dm3] 3L_12487865_SNP [dm6]	T	G	2.476e^-4	0.692	INTRON CG10660	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2829054	X_2829054_SNP [dm3] X_2935021_SNP [dm6]	G	A	2.480e^-4	0.692	UPSTREAM CG3592 INTRON kirre
2R	10517201	2R_10517201_SNP [dm3] 2R_14629696_SNP [dm6]	T	G	2.487e^-4	0.692	UPSTREAM CG10131 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4255201	2L_4255201_SNP [dm3] 2L_4255201_SNP [dm6]	A	T	2.492e^-4	0.692	DOWNSTREAM CR45294 & 1 other INTERGENIC
2L	17804869	2L_17804869_SNP [dm3] 2L_17804869_SNP [dm6]	C	T	2.499e^-4	0.692	INTRON CadN2
X	9986082	X_9986082_SNP [dm3] X_10092049_SNP [dm6]	T	G	2.500e^-4	0.692	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10643535	2L_10643535_SNP [dm3] 2L_10643535_SNP [dm6]	G	C	2.504e^-4	0.692	UTR_3_PRIME CG31872 UPSTREAM CG18284 DOWNSTREAM CG31872
2R	8910204	2R_8910204_SNP [dm3] 2R_13022699_SNP [dm6]	C	T	2.506e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_sens
2L	10885669	2L_10885669_SNP [dm3] 2L_10885669_SNP [dm6]	A	G	2.513e^-4	0.692	UPSTREAM CR44490 INTERGENIC
3L	9496595	3L_9496595_DEL [dm3] 3L_9503495_DEL [dm6]	AATATATAATATATATATAT...	CT	2.515e^-4	0.692	INTRON path	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14780770	2L_14780770_INS [dm3] 2L_14780770_INS [dm6]	T	TACATTTT	2.515e^-4	0.692	DOWNSTREAM CR15280 INTERGENIC
2L	3271695	2L_3271695_SNP [dm3] 2L_3271695_SNP [dm6]	C	G	2.516e^-4	0.692	UTR_3_PRIME CG3347
2R	18430560	2R_18430560_SNP [dm3] 2R_22543055_SNP [dm6]	T	C	2.523e^-4	0.692	INTRON px	TF binding site mE1_TFBS_cad
3R	2676621	3R_2676621_SNP [dm3] 3R_6850899_SNP [dm6]	T	A	2.528e^-4	0.692	UPSTREAM Scr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	3455482	2L_3455482_SNP [dm3] 2L_3455482_SNP [dm6]	G	T	2.530e^-4	0.692	SYNONYMOUS_CODING Cog3
X	10338721	X_10338721_SNP [dm3] X_10444688_SNP [dm6]	T	C	2.532e^-4	0.692	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
3L	18295544	3L_18295544_MNP [dm3] 3L_18302444_MNP [dm6]	GTG	AAT	2.538e^-4	0.692	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	16142993	3R_16142993_SNP [dm3] 3R_20317271_SNP [dm6]	A	T	2.540e^-4	0.692	UPSTREAM CG42668 INTRON CG42668
X	6906193	X_6906193_SNP [dm3] X_7012160_SNP [dm6]	G	A	2.546e^-4	0.692	DOWNSTREAM CG3032 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	1232567	2L_1232567_SNP [dm3] 2L_1232567_SNP [dm6]	A	T	2.550e^-4	0.692	INTERGENIC
3L	12487401	3L_12487401_SNP [dm3] 3L_12494301_SNP [dm6]	A	G	2.551e^-4	0.692	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10643525	2L_10643525_SNP [dm3] 2L_10643525_SNP [dm6]	C	G	2.555e^-4	0.692	UTR_3_PRIME CG31872 UPSTREAM CG18284 DOWNSTREAM CG31872
3L	7841943	3L_7841943_SNP [dm3] 3L_7848843_SNP [dm6]	A	G	2.555e^-4	0.692	INTRON Pdp1	regulatory region REDfly_CRMs
3L	9376087	3L_9376087_DEL [dm3] 3L_9382987_DEL [dm6]	GC	G	2.557e^-4	0.692	DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10507866	2R_10507866_SNP [dm3] 2R_14620361_SNP [dm6]	G	A	2.564e^-4	0.692	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7872467	2L_7872467_SNP [dm3] 2L_7872467_SNP [dm6]	C	A	2.564e^-4	0.692	UPSTREAM tRNA:G3:28D & 1 other INTERGENIC
2R	10788315	2R_10788315_SNP [dm3] 2R_14900810_SNP [dm6]	G	A	2.564e^-4	0.692	NON_SYNONYMOUS_CODING Cyp317a1 DOWNSTREAM CG10249	TF binding site mE1_TFBS_sens
2L	6140946	2L_6140946_SNP [dm3] 2L_6140946_SNP [dm6]	T	C	2.575e^-4	0.692	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7478289	2L_7478289_SNP [dm3] 2L_7478289_SNP [dm6]	G	T	2.592e^-4	0.692	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15060324	X_15060324_SNP [dm3] X_15166291_SNP [dm6]	T	A	2.594e^-4	0.692	INTERGENIC
X	15060333	X_15060333_SNP [dm3] X_15166300_SNP [dm6]	A	G	2.594e^-4	0.692	INTERGENIC
X	14281645	X_14281645_SNP [dm3] X_14387612_SNP [dm6]	G	A	2.595e^-4	0.692	INTRON dpr8	TF binding site BDTNP1_TFBS_Med
X	4561091	X_4561091_SNP [dm3] X_4667058_SNP [dm6]	C	A	2.597e^-4	0.692	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2R	6858568	2R_6858568_DEL [dm3] 2R_10971063_DEL [dm6]	GAAATAG	G	2.602e^-4	0.692	INTERGENIC
2R	13103062	2R_13103062_SNP [dm3] 2R_17215557_SNP [dm6]	C	T	2.619e^-4	0.692	UPSTREAM mbl INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	7153107	2L_7153107_SNP [dm3] 2L_7153107_SNP [dm6]	T	G	2.623e^-4	0.692	INTRON Pvf3
3L	7049596	3L_7049596_SNP [dm3] 3L_7056496_SNP [dm6]	T	A	2.626e^-4	0.692	INTERGENIC
2R	7464443	2R_7464443_SNP [dm3] 2R_11576938_SNP [dm6]	G	A	2.627e^-4	0.692	DOWNSTREAM tou INTERGENIC
2R	14222128	2R_14222128_SNP [dm3] 2R_18334623_SNP [dm6]	T	A	2.627e^-4	0.692	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12877705	X_12877705_SNP [dm3] X_12983672_SNP [dm6]	A	G	2.627e^-4	0.692	UPSTREAM CG32643 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9458686	2R_9458686_SNP [dm3] 2R_13571181_SNP [dm6]	T	G	2.632e^-4	0.692	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Kr mE1_TFBS_Stat92E
3L	6074541	3L_6074541_SNP [dm3] 3L_6081441_SNP [dm6]	A	C	2.636e^-4	0.692	UTR_3_PRIME CG6619	TF binding site mE1_TFBS_cad
3R	4059733	3R_4059733_DEL [dm3] 3R_8234011_DEL [dm6]	AA	A	2.637e^-4	0.692	UPSTREAM CR45549 INTRON DNApol-iota	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	18904006	2L_18904006_SNP [dm3] 2L_18904006_SNP [dm6]	A	G	2.645e^-4	0.692	INTERGENIC
3R	13438055	3R_13438055_SNP [dm3] 3R_17612333_SNP [dm6]	G	A	2.648e^-4	0.692	UPSTREAM Edg91 & 1 other INTERGENIC
2R	14535206	2R_14535206_SNP [dm3] 2R_18647701_SNP [dm6]	C	G	2.648e^-4	0.692	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2L	16257730	2L_16257730_SNP [dm3] 2L_16257730_SNP [dm6]	A	G	2.654e^-4	0.692	UTR_5_PRIME EndoGI UPSTREAM EndoGI & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_zfh1
X	15718691	X_15718691_SNP [dm3] X_15824658_SNP [dm6]	T	C	2.657e^-4	0.692	UTR_3_PRIME sd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7057701	2L_7057701_SNP [dm3] 2L_7057701_SNP [dm6]	T	C	2.658e^-4	0.692	INTRON Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12419246	3L_12419246_SNP [dm3] 3L_12426146_SNP [dm6]	T	C	2.659e^-4	0.692	INTRON toe
2L	4374910	2L_4374910_SNP [dm3] 2L_4374910_SNP [dm6]	T	C	2.663e^-4	0.692	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13937016	2R_13937016_SNP [dm3] 2R_18049511_SNP [dm6]	C	T	2.664e^-4	0.692	NON_SYNONYMOUS_CODING CG14495 DOWNSTREAM CG34005 & 1 other
3L	12321715	3L_12321715_SNP [dm3] 3L_12328615_SNP [dm6]	T	A	2.667e^-4	0.692	UPSTREAM CG32105 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3454875	2L_3454875_SNP [dm3] 2L_3454875_SNP [dm6]	C	T	2.667e^-4	0.692	SYNONYMOUS_CODING Cog3
2L	7156980	2L_7156980_SNP [dm3] 2L_7156980_SNP [dm6]	T	C	2.669e^-4	0.692	UTR_5_PRIME Pvf3	TF binding site mE1_TFBS_HSA
2R	10721104	2R_10721104_SNP [dm3] 2R_14833599_SNP [dm6]	G	A	2.671e^-4	0.692	NON_SYNONYMOUS_CODING CG10205 UTR_3_PRIME CG10205
X	14681623	X_14681623_SNP [dm3] X_14787590_SNP [dm6]	A	G	2.674e^-4	0.692	UTR_3_PRIME rut EXON CR45522
2L	3669038	2L_3669038_SNP [dm3] 2L_3669038_SNP [dm6]	T	C	2.676e^-4	0.692	UPSTREAM Sfp24Ba DOWNSTREAM Sfp24Bb INTRON CG34340 & 1 other
X	19588464	X_19588464_SNP [dm3] X_19694431_SNP [dm6]	A	T	2.680e^-4	0.692	UTR_3_PRIME CG14229 UPSTREAM Mer	TF binding site BDTNP1_TFBS_dl
2R	10151361	2R_10151361_SNP [dm3] 2R_14263856_SNP [dm6]	A	C	2.680e^-4	0.692	SPLICE_SITE_REGION CG8547 INTRON CG8547	TF binding site mE1_TFBS_cad
3R	15878656	3R_15878656_SNP [dm3] 3R_20052934_SNP [dm6]	C	T	2.686e^-4	0.692	INTRON CG17193	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	9766580	2R_9766580_SNP [dm3] 2R_13879075_SNP [dm6]	G	A	2.689e^-4	0.692	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9791928	3R_9791928_SNP [dm3] 3R_13966206_SNP [dm6]	G	C	2.690e^-4	0.692	SYNONYMOUS_CODING Orc2 DOWNSTREAM rdx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5440140	X_5440140_SNP [dm3] X_5546107_SNP [dm6]	A	G	2.692e^-4	0.692	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	12045414	X_12045414_SNP [dm3] X_12151381_SNP [dm6]	T	A	2.694e^-4	0.692	INTRON Ten-a
2R	11708147	2R_11708147_SNP [dm3] 2R_15820642_SNP [dm6]	A	C	2.697e^-4	0.692	SYNONYMOUS_CODING CG33465 INTRON tun
3L	12489666	3L_12489666_SNP [dm3] 3L_12496566_SNP [dm6]	C	A	2.698e^-4	0.692	INTRON CG10657
X	17260458	X_17260458_SNP [dm3] X_17366425_SNP [dm6]	T	A	2.701e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	1636435	2L_1636435_SNP [dm3] 2L_1636435_SNP [dm6]	A	T	2.706e^-4	0.692	INTERGENIC
2R	10526796	2R_10526796_INS [dm3] 2R_14639291_INS [dm6]	T	TTT	2.709e^-4	0.692	FRAME_SHIFT CG42715 DOWNSTREAM CG43236 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11296208	2L_11296208_SNP [dm3] 2L_11296208_SNP [dm6]	T	C	2.709e^-4	0.692	INTERGENIC
2L	9327133	2L_9327133_SNP [dm3] 2L_9327133_SNP [dm6]	T	C	2.720e^-4	0.692	UPSTREAM CG17005 DOWNSTREAM CR45456 EXON CR45457
2R	10534606	2R_10534606_SNP [dm3] 2R_14647101_SNP [dm6]	G	A	2.720e^-4	0.692	DOWNSTREAM CG10139 INTERGENIC
X	18479066	X_18479066_SNP [dm3] X_18585033_SNP [dm6]	C	T	2.721e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10622530	2R_10622530_SNP [dm3] 2R_14735025_SNP [dm6]	G	A	2.722e^-4	0.692	INTERGENIC
3L	5028484	3L_5028484_SNP [dm3] 3L_5028484_SNP [dm6]	A	G	2.724e^-4	0.692	INTRON Con
2L	14428403	2L_14428403_SNP [dm3] 2L_14428403_SNP [dm6]	G	T	2.728e^-4	0.692	DOWNSTREAM CR44732 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	9638451	3L_9638451_SNP [dm3] 3L_9645351_SNP [dm6]	G	T	2.733e^-4	0.692	SYNONYMOUS_CODING CG33696 INTRON fry
2L	5123991	2L_5123991_SNP [dm3] 2L_5123991_SNP [dm6]	C	T	2.739e^-4	0.692	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10763318	2R_10763318_SNP [dm3] 2R_14875813_SNP [dm6]	A	G	2.741e^-4	0.692	UPSTREAM Cyp6a23 DOWNSTREAM Cyp6a17 INTERGENIC
X	2822255	X_2822255_SNP [dm3] X_2928222_SNP [dm6]	A	G	2.744e^-4	0.692	UPSTREAM CG14424 INTRON kirre
2R	11976344	2R_11976344_SNP [dm3] 2R_16088839_SNP [dm6]	T	A	2.745e^-4	0.692	INTRON Dg
2R	4957825	2R_4957825_SNP [dm3] 2R_9070320_SNP [dm6]	T	A	2.747e^-4	0.692	INTRON ana	TF binding site BDTNP1_TFBS_Med
2L	13313460	2L_13313460_SNP [dm3] 2L_13313460_SNP [dm6]	G	A	2.755e^-4	0.692	INTRON CG43778
X	11111780	X_11111780_SNP [dm3] X_11217747_SNP [dm6]	G	A	2.763e^-4	0.692	INTERGENIC
X	12045411	X_12045411_SNP [dm3] X_12151378_SNP [dm6]	T	G	2.767e^-4	0.692	INTRON Ten-a
2L	7029273	2L_7029273_SNP [dm3] 2L_7029273_SNP [dm6]	G	A	2.768e^-4	0.692	DOWNSTREAM CG3476 INTERGENIC
2L	4443601	2L_4443601_SNP [dm3] 2L_4443601_SNP [dm6]	G	A	2.771e^-4	0.692	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	2009955	2L_2009955_SNP [dm3] 2L_2009955_SNP [dm6]	A	C	2.771e^-4	0.692	UTR_5_PRIME CG4238 DOWNSTREAM Nplp4 & 4 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17054078	2L_17054078_SNP [dm3] 2L_17054078_SNP [dm6]	T	G	2.772e^-4	0.692	INTERGENIC
2L	5029518	2L_5029518_SNP [dm3] 2L_5029518_SNP [dm6]	G	C	2.777e^-4	0.692	UPSTREAM Cg25C INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9208845	3L_9208845_SNP [dm3] 3L_9215745_SNP [dm6]	A	G	2.777e^-4	0.692	DOWNSTREAM CG4476 INTERGENIC
X	15535082	X_15535082_DEL [dm3] X_15641049_DEL [dm6]	GTAGATTCTCTTATTG...	G	2.790e^-4	0.692	DOWNSTREAM CR44893 INTERGENIC
2R	12598604	2R_12598604_SNP [dm3] 2R_16711099_SNP [dm6]	T	A	2.801e^-4	0.692	INTRON CG30463
2R	4957823	2R_4957823_SNP [dm3] 2R_9070318_SNP [dm6]	A	C	2.808e^-4	0.692	INTRON ana	TF binding site BDTNP1_TFBS_Med
2R	10151413	2R_10151413_SNP [dm3] 2R_14263908_SNP [dm6]	C	T	2.812e^-4	0.692	SYNONYMOUS_CODING CG8547	TF binding site mE1_TFBS_cad
X	5901352	X_5901352_SNP [dm3] X_6007319_SNP [dm6]	A	T	2.813e^-4	0.692	DOWNSTREAM mab-21 INTERGENIC
2L	3677862	2L_3677862_SNP [dm3] 2L_3677862_SNP [dm6]	T	G	2.825e^-4	0.692	INTRON CG34340
2L	4444273	2L_4444273_SNP [dm3] 2L_4444273_SNP [dm6]	A	G	2.829e^-4	0.692	SYNONYMOUS_CODING morgue UPSTREAM Elp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	12777126	2R_12777126_SNP [dm3] 2R_16889621_SNP [dm6]	T	G	2.832e^-4	0.692	INTRON CG8910
X	8255943	X_8255943_SNP [dm3] X_8361910_SNP [dm6]	G	A	2.836e^-4	0.692	INTRON nAChRalpha3
3L	3944533	3L_3944533_SNP [dm3] 3L_3944533_SNP [dm6]	C	A	2.839e^-4	0.692	SYNONYMOUS_CODING CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2R	10597507	2R_10597507_SNP [dm3] 2R_14710002_SNP [dm6]	A	T	2.858e^-4	0.692	INTRON mspo
2R	13526944	2R_13526944_DEL [dm3] 2R_17639439_DEL [dm6]	TGGTTTATTTACATT...	T	2.858e^-4	0.692	UPSTREAM CG10936 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18051382	2R_18051382_SNP [dm3] 2R_22163877_SNP [dm6]	T	A	2.861e^-4	0.692	NON_SYNONYMOUS_CODING CG34206 INTRON a
2R	10672660	2R_10672660_SNP [dm3] 2R_14785155_SNP [dm6]	G	A	2.869e^-4	0.692	INTRON kn
3R	2665701	3R_2665701_SNP [dm3] 3R_6839979_SNP [dm6]	G	A	2.872e^-4	0.692	INTRON Scr	regulatory region REDfly_CRMs
X	14262921	X_14262921_SNP [dm3] X_14368888_SNP [dm6]	A	C	2.875e^-4	0.692	INTRON dpr8
3L	3226814	3L_3226814_SNP [dm3] 3L_3226814_SNP [dm6]	C	T	2.877e^-4	0.692	INTRON CG11505	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4358949	3R_4358949_SNP [dm3] 3R_8533227_SNP [dm6]	G	A	2.878e^-4	0.692	INTERGENIC
X	9800332	X_9800332_SNP [dm3] X_9906299_SNP [dm6]	T	C	2.879e^-4	0.692	INTERGENIC
2R	14053124	2R_14053124_SNP [dm3] 2R_18165619_SNP [dm6]	T	G	2.883e^-4	0.692	SYNONYMOUS_CODING Nup75 DOWNSTREAM CG10915
2L	3885720	2L_3885720_SNP [dm3] 2L_3885720_SNP [dm6]	A	G	2.887e^-4	0.692	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	13527349	2R_13527349_SNP [dm3] 2R_17639844_SNP [dm6]	A	T	2.888e^-4	0.692	UPSTREAM CG10936 INTERGENIC
2R	12966664	2R_12966664_SNP [dm3] 2R_17079159_SNP [dm6]	C	A	2.890e^-4	0.692	INTRON CG30460
3L	6532527	3L_6532527_SNP [dm3] 3L_6539427_SNP [dm6]	T	A	2.895e^-4	0.692	INTRON sfl
3L	16700417	3L_16700417_DEL [dm3] 3L_16707317_DEL [dm6]	GTCTTCAG	G	2.900e^-4	0.692	DOWNSTREAM CG9692 INTRON Lasp & 1 other
3R	25647177	3R_25647177_SNP [dm3] 3R_29821455_SNP [dm6]	C	T	2.901e^-4	0.692	INTRON neo
2L	10611000	2L_10611000_SNP [dm3] 2L_10611000_SNP [dm6]	G	A	2.906e^-4	0.692	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12421515	3L_12421515_SNP [dm3] 3L_12428415_SNP [dm6]	T	C	2.912e^-4	0.692	INTRON toe	TF binding site mE1_TFBS_chinmo
3L	10393801	3L_10393801_SNP [dm3] 3L_10400701_SNP [dm6]	A	G	2.914e^-4	0.692	INTERGENIC
2L	7846800	2L_7846800_SNP [dm3] 2L_7846800_SNP [dm6]	T	C	2.914e^-4	0.692	UTR_3_PRIME CG14535
X	17726152	X_17726152_SNP [dm3] X_17832119_SNP [dm6]	C	G	2.915e^-4	0.692	INTRON CG6398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	14386253	3L_14386253_SNP [dm3] 3L_14393153_SNP [dm6]	G	A	2.917e^-4	0.692	INTERGENIC
3L	10764005	3L_10764005_SNP [dm3] 3L_10770905_SNP [dm6]	C	T	2.920e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	1610446	3L_1610446_SNP [dm3] 3L_1610446_SNP [dm6]	C	A	2.920e^-4	0.692	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
3L	6513741	3L_6513741_SNP [dm3] 3L_6520641_SNP [dm6]	C	T	2.922e^-4	0.692	INTRON sfl
2R	7468307	2R_7468307_SNP [dm3] 2R_11580802_SNP [dm6]	C	T	2.928e^-4	0.692	SYNONYMOUS_CODING tou UTR_5_PRIME tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7752869	2L_7752869_SNP [dm3] 2L_7752869_SNP [dm6]	C	T	2.932e^-4	0.692	UPSTREAM CR45718 INTRON CG7203
2R	20478826	2R_20478826_SNP [dm3] 2R_24591303_SNP [dm6]	T	C	2.933e^-4	0.692	INTRON pio	TF binding site BDTNP1_TFBS_prd
3L	18746854	3L_18746854_SNP [dm3] 3L_18753754_SNP [dm6]	A	T	2.940e^-4	0.692	INTRON ftz-f1
X	9777748	X_9777748_SNP [dm3] X_9883715_SNP [dm6]	G	A	2.942e^-4	0.692	UPSTREAM CG9691 DOWNSTREAM CG9689 INTERGENIC
2L	12028088	2L_12028088_SNP [dm3] 2L_12028088_SNP [dm6]	G	A	2.943e^-4	0.692	INTRON dmGlut	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5892798	2L_5892798_SNP [dm3] 2L_5892798_SNP [dm6]	C	T	2.944e^-4	0.692	DOWNSTREAM Acp26Aa INTRON Acp26Ab	TF binding site mE1_TFBS_sens
3L	9207645	3L_9207645_SNP [dm3] 3L_9214545_SNP [dm6]	G	T	2.955e^-4	0.692	INTRON CG4476
2L	9378395	2L_9378395_SNP [dm3] 2L_9378395_SNP [dm6]	C	T	2.958e^-4	0.692	INTRON Shawl
2L	7090625	2L_7090625_SNP [dm3] 2L_7090625_SNP [dm6]	T	G	2.960e^-4	0.692	INTERGENIC
2R	12629497	2R_12629497_SNP [dm3] 2R_16741992_SNP [dm6]	C	G	2.960e^-4	0.692	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	15878803	3R_15878803_SNP [dm3] 3R_20053081_SNP [dm6]	T	A	2.961e^-4	0.692	INTRON CG17193	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sbb
2R	15254247	2R_15254247_SNP [dm3] 2R_19366742_SNP [dm6]	T	A	2.967e^-4	0.692	DOWNSTREAM CG9416 INTRON CG10051
3L	2578238	3L_2578238_SNP [dm3] 3L_2578238_SNP [dm6]	A	C	2.974e^-4	0.692	INTRON msn
3R	8996275	3R_8996275_SNP [dm3] 3R_13170553_SNP [dm6]	T	C	2.976e^-4	0.692	INTERGENIC
2L	10632461	2L_10632461_SNP [dm3] 2L_10632461_SNP [dm6]	C	T	2.981e^-4	0.692	INTRON CG7329
2R	14222122	2R_14222122_SNP [dm3] 2R_18334617_SNP [dm6]	G	T	2.982e^-4	0.692	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9643029	2R_9643029_SNP [dm3] 2R_13755524_SNP [dm6]	G	A	2.984e^-4	0.692	NON_SYNONYMOUS_CODING CG6280
X	14281635	X_14281635_SNP [dm3] X_14387602_SNP [dm6]	T	G	2.987e^-4	0.692	INTRON dpr8	TF binding site BDTNP1_TFBS_Med
3L	10061721	3L_10061721_SNP [dm3] 3L_10068621_SNP [dm6]	A	G	2.989e^-4	0.692	INTRON dpr6
2R	11269154	2R_11269154_SNP [dm3] 2R_15381649_SNP [dm6]	C	T	2.992e^-4	0.692	UTR_5_PRIME SRPK UPSTREAM dup INTRON SRPK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	10589127	2R_10589127_INS [dm3] 2R_14701622_INS [dm6]	T	TT	2.997e^-4	0.692	INTRON mspo
2R	17905586	2R_17905586_SNP [dm3] 2R_22018081_SNP [dm6]	C	T	2.999e^-4	0.692	INTRON CG34370
X	7425373	X_7425373_SNP [dm3] X_7531340_SNP [dm6]	A	T	3.001e^-4	0.692	INTRON CG32719
2R	14706704	2R_14706704_SNP [dm3] 2R_18819199_SNP [dm6]	T	C	3.002e^-4	0.692	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14383196	3R_14383196_DEL [dm3] 3R_18557474_DEL [dm6]	TT	T	3.002e^-4	0.692	INTERGENIC
2L	19913411	2L_19913411_SNP [dm3] 2L_19913411_SNP [dm6]	A	T	3.007e^-4	0.692	INTRON sick & 1 other
2R	10692295	2R_10692295_SNP [dm3] 2R_14804790_SNP [dm6]	C	G	3.007e^-4	0.692	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	21117673	2L_21117673_DEL [dm3] 2L_21117673_DEL [dm6]	AA	T	3.014e^-4	0.692	INTRON Nhe2
3R	16570205	3R_16570205_SNP [dm3] 3R_20744483_SNP [dm6]	C	G	3.019e^-4	0.692	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16570211	3R_16570211_SNP [dm3] 3R_20744489_SNP [dm6]	T	G	3.019e^-4	0.692	SYNONYMOUS_CODING CG31200 UPSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8999989	2L_8999989_SNP [dm3] 2L_8999989_SNP [dm6]	C	T	3.020e^-4	0.692	DOWNSTREAM Try29F INTERGENIC
3R	12874782	3R_12874782_SNP [dm3] 3R_17049060_SNP [dm6]	A	C	3.021e^-4	0.692	DOWNSTREAM Patr-1 INTERGENIC
3R	14754512	3R_14754512_SNP [dm3] 3R_18928790_SNP [dm6]	G	A	3.026e^-4	0.692	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4589577	3L_4589577_SNP [dm3] 3L_4589577_SNP [dm6]	T	G	3.030e^-4	0.692	INTRON CG42540
2R	15203387	2R_15203387_SNP [dm3] 2R_19315882_SNP [dm6]	T	C	3.032e^-4	0.692	INTRON Rgk1
2R	10742687	2R_10742687_SNP [dm3] 2R_14855182_SNP [dm6]	G	T	3.035e^-4	0.692	UPSTREAM HPS1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14386254	3L_14386254_SNP [dm3] 3L_14393154_SNP [dm6]	A	T	3.040e^-4	0.692	INTERGENIC
3L	18744072	3L_18744072_SNP [dm3] 3L_18750972_SNP [dm6]	C	G	3.046e^-4	0.692	UTR_3_PRIME ftz-f1 DOWNSTREAM Atg3 & 1 other
2R	15254092	2R_15254092_SNP [dm3] 2R_19366587_SNP [dm6]	T	C	3.050e^-4	0.692	SYNONYMOUS_CODING CG10051 DOWNSTREAM CG9416
2L	17927212	2L_17927212_SNP [dm3] 2L_17927212_SNP [dm6]	T	A	3.052e^-4	0.692	INTERGENIC
2L	7963551	2L_7963551_SNP [dm3] 2L_7963551_SNP [dm6]	G	C	3.055e^-4	0.692	INTRON Snoo
2L	13461064	2L_13461064_SNP [dm3] 2L_13461064_SNP [dm6]	C	G	3.063e^-4	0.693	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA
X	10364166	X_10364166_SNP [dm3] X_10470133_SNP [dm6]	G	A	3.072e^-4	0.694	SYNONYMOUS_CODING nocte	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	17256743	X_17256743_SNP [dm3] X_17362710_SNP [dm6]	G	A	3.077e^-4	0.695	INTERGENIC
2R	7669649	2R_7669649_SNP [dm3] 2R_11782144_SNP [dm6]	A	T	3.086e^-4	0.695	INTRON ths
2L	6001104	2L_6001104_SNP [dm3] 2L_6001104_SNP [dm6]	C	A	3.089e^-4	0.695	INTRON Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12947278	3R_12947278_SNP [dm3] 3R_17121556_SNP [dm6]	T	C	3.089e^-4	0.695	UPSTREAM CG42779 DOWNSTREAM CG34278 INTRON cher
2R	10135895	2R_10135895_SNP [dm3] 2R_14248390_SNP [dm6]	C	T	3.096e^-4	0.696	SYNONYMOUS_CODING Mdr50
3R	25800573	3R_25800573_SNP [dm3] 3R_29974851_SNP [dm6]	A	G	3.103e^-4	0.696	INTERGENIC
2R	9774945	2R_9774945_SNP [dm3] 2R_13887440_SNP [dm6]	G	T	3.104e^-4	0.696	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2R	12972020	2R_12972020_SNP [dm3] 2R_17084515_SNP [dm6]	G	T	3.108e^-4	0.696	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22177582	X_22177582_INS [dm3] X_22775746_INS [dm6]	A	AA	3.111e^-4	0.696	INTRON CR44997
X	5901358	X_5901358_SNP [dm3] X_6007325_SNP [dm6]	T	C	3.118e^-4	0.696	DOWNSTREAM mab-21 INTERGENIC
2L	9409130	2L_9409130_INS [dm3] 2L_9409130_INS [dm6]	G	GAT	3.120e^-4	0.696	INTRON Shawl
2L	15307592	2L_15307592_SNP [dm3] 2L_15307592_SNP [dm6]	A	T	3.132e^-4	0.698	INTERGENIC
2R	15044694	2R_15044694_SNP [dm3] 2R_19157189_SNP [dm6]	A	C	3.151e^-4	0.698	INTRON ena
2L	12593820	2L_12593820_SNP [dm3] 2L_12593820_SNP [dm6]	G	A	3.154e^-4	0.698	UTR_5_PRIME nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	12971953	2R_12971953_SNP [dm3] 2R_17084448_SNP [dm6]	C	G	3.158e^-4	0.698	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7989757	2R_7989757_SNP [dm3] 2R_12102252_SNP [dm6]	A	G	3.158e^-4	0.698	INTRON jeb	TF binding site BDTNP1_TFBS_dl
2L	9326971	2L_9326971_DEL [dm3] 2L_9326971_DEL [dm6]	ATATACAATTG...	A	3.164e^-4	0.698	UPSTREAM CR45457 & 1 other DOWNSTREAM CR45456 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18109190	2L_18109190_SNP [dm3] 2L_18109190_SNP [dm6]	T	C	3.164e^-4	0.698	INTERGENIC
3L	7861543	3L_7861543_SNP [dm3] 3L_7868443_SNP [dm6]	T	A	3.165e^-4	0.698	UPSTREAM CG32365 INTERGENIC
2R	11749770	2R_11749770_SNP [dm3] 2R_15862265_SNP [dm6]	G	C	3.168e^-4	0.698	UPSTREAM Gpo-1 INTRON Gpo-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
X	12837943	X_12837943_SNP [dm3] X_12943910_SNP [dm6]	A	G	3.168e^-4	0.698	INTRON fne
2R	10531450	2R_10531450_SNP [dm3] 2R_14643945_SNP [dm6]	T	C	3.173e^-4	0.698	INTERGENIC
2R	8486235	2R_8486235_SNP [dm3] 2R_12598730_SNP [dm6]	C	G	3.176e^-4	0.698	INTRON Amph
X	9585042	X_9585042_DEL [dm3] X_9691009_DEL [dm6]	TTA	T	3.178e^-4	0.698	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16287881	2R_16287881_SNP [dm3] 2R_20400376_SNP [dm6]	G	A	3.191e^-4	0.699	INTERGENIC
2R	667154	2R_667154_SNP [dm3] 2R_4779649_SNP [dm6]	T	A	3.191e^-4	0.699	DOWNSTREAM CR43281 INTERGENIC	transposable element FlyBase
3R	13438042	3R_13438042_SNP [dm3] 3R_17612320_SNP [dm6]	T	C	3.194e^-4	0.699	UPSTREAM Edg91 & 1 other INTERGENIC
3L	6540725	3L_6540725_DEL [dm3] 3L_6547625_DEL [dm6]	CCTC	C	3.205e^-4	0.7	INTRON sfl	TF binding site BDTNP1_TFBS_twi
3L	3454673	3L_3454673_SNP [dm3] 3L_3454673_SNP [dm6]	G	C	3.212e^-4	0.7	INTRON eIF5B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12973106	2R_12973106_SNP [dm3] 2R_17085601_SNP [dm6]	G	A	3.213e^-4	0.7	INTRON CG30460
2L	19234399	2L_19234399_SNP [dm3] 2L_19234399_SNP [dm6]	G	A	3.218e^-4	0.7	INTERGENIC
2R	10508081	2R_10508081_SNP [dm3] 2R_14620576_SNP [dm6]	C	T	3.222e^-4	0.7	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	12136180	3L_12136180_DEL [dm3] 3L_12143080_DEL [dm6]	TA	T	3.222e^-4	0.7	UTR_3_PRIME RhoGAP68F DOWNSTREAM CG5642
2R	9419016	2R_9419016_SNP [dm3] 2R_13531511_SNP [dm6]	G	T	3.227e^-4	0.7	UTR_5_PRIME Vmat
2R	12011783	2R_12011783_SNP [dm3] 2R_16124278_SNP [dm6]	C	T	3.238e^-4	0.7	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
2R	12984946	2R_12984946_SNP [dm3] 2R_17097441_SNP [dm6]	G	A	3.239e^-4	0.7	START_GAINED GstS1 UTR_5_PRIME GstS1 UPSTREAM GstS1 INTRON GstS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7049751	3L_7049751_SNP [dm3] 3L_7056651_SNP [dm6]	C	A	3.240e^-4	0.7	INTERGENIC
X	12934984	X_12934984_SNP [dm3] X_13040951_SNP [dm6]	T	C	3.242e^-4	0.7	INTRON rad
2R	10589092	2R_10589092_SNP [dm3] 2R_14701587_SNP [dm6]	G	A	3.248e^-4	0.7	INTRON mspo
2L	16449012	2L_16449012_SNP [dm3] 2L_16449012_SNP [dm6]	G	A	3.249e^-4	0.7	UTR_5_PRIME Idgf2 UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	2351081	2L_2351081_SNP [dm3] 2L_2351081_SNP [dm6]	T	G	3.254e^-4	0.7	INTRON CG9967 & 1 other
X	10338792	X_10338792_SNP [dm3] X_10444759_SNP [dm6]	C	T	3.259e^-4	0.7	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
X	21294503	X_21294503_SNP [dm3] X_21423476_SNP [dm6]	T	C	3.259e^-4	0.7	UTR_3_PRIME CG42343
2L	9121570	2L_9121570_SNP [dm3] 2L_9121570_SNP [dm6]	T	A	3.263e^-4	0.7	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6539221	X_6539221_SNP [dm3] X_6645188_SNP [dm6]	G	A	3.276e^-4	0.701	NON_SYNONYMOUS_CODING pigs
X	11314428	X_11314428_INS [dm3] X_11420395_INS [dm6]	A	AA	3.276e^-4	0.701	INTERGENIC
2L	7775314	2L_7775314_SNP [dm3] 2L_7775314_SNP [dm6]	A	G	3.280e^-4	0.701	DOWNSTREAM CG7179 & 1 other INTERGENIC
3L	12422482	3L_12422482_SNP [dm3] 3L_12429382_SNP [dm6]	C	T	3.293e^-4	0.702	INTRON toe
2L	2609050	2L_2609050_SNP [dm3] 2L_2609050_SNP [dm6]	A	C	3.303e^-4	0.702	UPSTREAM CG15395 INTERGENIC
2L	14441223	2L_14441223_SNP [dm3] 2L_14441223_SNP [dm6]	G	A	3.305e^-4	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10711858	2R_10711858_SNP [dm3] 2R_14824353_SNP [dm6]	A	G	3.305e^-4	0.702	EXON CR45329
3R	19122544	3R_19122544_SNP [dm3] 3R_23296822_SNP [dm6]	G	A	3.305e^-4	0.702	INTRON pnt	TF binding site BDTNP1_TFBS_dl
3L	5569849	3L_5569849_SNP [dm3] 3L_5576749_SNP [dm6]	T	G	3.317e^-4	0.702	INTRON Msr-110
2L	9386747	2L_9386747_SNP [dm3] 2L_9386747_SNP [dm6]	C	T	3.324e^-4	0.702	UPSTREAM Aldh INTRON Shawl
2L	7847007	2L_7847007_SNP [dm3] 2L_7847007_SNP [dm6]	T	C	3.324e^-4	0.702	SYNONYMOUS_CODING CG14535
2L	7478418	2L_7478418_SNP [dm3] 2L_7478418_SNP [dm6]	C	T	3.328e^-4	0.702	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6477734	3L_6477734_SNP [dm3] 3L_6484634_SNP [dm6]	A	T	3.330e^-4	0.702	INTRON CG42747	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17387442	3L_17387442_SNP [dm3] 3L_17394342_SNP [dm6]	T	C	3.333e^-4	0.702	INTERGENIC
2L	7091063	2L_7091063_SNP [dm3] 2L_7091063_SNP [dm6]	A	C	3.334e^-4	0.702	INTERGENIC
2L	19908475	2L_19908475_SNP [dm3] 2L_19908475_SNP [dm6]	G	A	3.336e^-4	0.702	INTRON sick
2L	14441118	2L_14441118_DEL [dm3] 2L_14441118_DEL [dm6]	CTATG	C	3.336e^-4	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9176248	2R_9176248_SNP [dm3] 2R_13288743_SNP [dm6]	T	A	3.345e^-4	0.702	INTRON Dh31-R
2R	10526813	2R_10526813_DEL [dm3] 2R_14639308_DEL [dm6]	TT	T	3.345e^-4	0.702	FRAME_SHIFT CG42715 DOWNSTREAM CG43236 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10527556	2R_10527556_SNP [dm3] 2R_14640051_SNP [dm6]	C	A	3.345e^-4	0.702	DOWNSTREAM CG12862 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	5864566	X_5864566_SNP [dm3] X_5970533_SNP [dm6]	G	T	3.353e^-4	0.702	INTRON Grip	TF binding site BDTNP1_TFBS_da
3R	15645001	3R_15645001_SNP [dm3] 3R_19819279_SNP [dm6]	G	A	3.354e^-4	0.702	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19920038	2L_19920038_SNP [dm3] 2L_19920038_SNP [dm6]	T	C	3.363e^-4	0.703	INTRON sick EXON CR43828
2L	9398303	2L_9398303_SNP [dm3] 2L_9398303_SNP [dm6]	T	A	3.373e^-4	0.705	UPSTREAM CG4438 INTRON Shawl
2L	16401064	2L_16401064_SNP [dm3] 2L_16401064_SNP [dm6]	A	G	3.379e^-4	0.705	INTRON CG5888
3L	18746778	3L_18746778_SNP [dm3] 3L_18753678_SNP [dm6]	A	T	3.386e^-4	0.706	INTRON ftz-f1
3R	5847134	3R_5847134_SNP [dm3] 3R_10021412_SNP [dm6]	A	T	3.407e^-4	0.706	START_GAINED Mical UTR_5_PRIME Mical INTRON Mical	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9829126	X_9829126_SNP [dm3] X_9935093_SNP [dm6]	T	C	3.407e^-4	0.706	INTERGENIC
3R	15877377	3R_15877377_SNP [dm3] 3R_20051655_SNP [dm6]	C	A	3.409e^-4	0.706	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	6669047	2L_6669047_SNP [dm3] 2L_6669047_SNP [dm6]	T	C	3.414e^-4	0.706	SYNONYMOUS_CODING cup UTR_5_PRIME CG34310
3L	1366132	3L_1366132_SNP [dm3] 3L_1366132_SNP [dm6]	G	A	3.414e^-4	0.706	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	10664892	2L_10664892_SNP [dm3] 2L_10664892_SNP [dm6]	T	G	3.418e^-4	0.706	INTRON CG31871
2L	5868113	2L_5868113_SNP [dm3] 2L_5868113_SNP [dm6]	A	T	3.430e^-4	0.706	INTRON rau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19216649	3L_19216649_INS [dm3] 3L_19223549_INS [dm6]	A	AAATAA	3.434e^-4	0.706	INTRON fz2
2L	9336425	2L_9336425_SNP [dm3] 2L_9336425_SNP [dm6]	T	C	3.437e^-4	0.706	INTRON Eaat1
2L	3434087	2L_3434087_SNP [dm3] 2L_3434087_SNP [dm6]	C	T	3.437e^-4	0.706	INTERGENIC
2L	8060695	2L_8060695_SNP [dm3] 2L_8060695_SNP [dm6]	A	G	3.438e^-4	0.706	SYNONYMOUS_CODING poe
2L	3272651	2L_3272651_SNP [dm3] 2L_3272651_SNP [dm6]	T	C	3.439e^-4	0.706	DOWNSTREAM CG3347 INTERGENIC
2L	6397979	2L_6397979_SNP [dm3] 2L_6397979_SNP [dm6]	A	T	3.449e^-4	0.706	UPSTREAM CG42369 INTRON CG42368
X	15502219	X_15502219_INS [dm3] X_15608186_INS [dm6]	G	GCCATCCAGCCAGCCAT...	3.450e^-4	0.706	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12911523	2L_12911523_SNP [dm3] 2L_12911523_SNP [dm6]	G	A	3.453e^-4	0.706	INTERGENIC
3L	4589631	3L_4589631_SNP [dm3] 3L_4589631_SNP [dm6]	T	A	3.454e^-4	0.706	INTRON CG42540
2R	7474789	2R_7474789_SNP [dm3] 2R_11587284_SNP [dm6]	G	A	3.456e^-4	0.706	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
3L	12557987	3L_12557987_SNP [dm3] 3L_12564887_SNP [dm6]	T	C	3.456e^-4	0.706	INTRON sowah
X	18478997	X_18478997_SNP [dm3] X_18584964_SNP [dm6]	C	A	3.460e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4857412	X_4857412_SNP [dm3] X_4963379_SNP [dm6]	C	T	3.468e^-4	0.707	INTRON CR44833	TF binding site BDTNP1_TFBS_twi
2L	10496297	2L_10496297_SNP [dm3] 2L_10496297_SNP [dm6]	C	G	3.475e^-4	0.708	INTRON Myo31DF
3R	15603810	3R_15603810_SNP [dm3] 3R_19778088_SNP [dm6]	A	T	3.482e^-4	0.708	UPSTREAM CG11659 & 1 other INTERGENIC
2R	10600808	2R_10600808_SNP [dm3] 2R_14713303_SNP [dm6]	C	T	3.485e^-4	0.708	UTR_5_PRIME mspo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3677892	2L_3677892_SNP [dm3] 2L_3677892_SNP [dm6]	A	C	3.487e^-4	0.708	INTRON CG34340
X	6905354	X_6905354_INS [dm3] X_7011321_INS [dm6]	C	CTC	3.507e^-4	0.71	UPSTREAM CG32736 & 2 others DOWNSTREAM CG3032 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9397225	2L_9397225_SNP [dm3] 2L_9397225_SNP [dm6]	C	G	3.507e^-4	0.71	SYNONYMOUS_CODING CG4438 INTRON Shawl
X	2822393	X_2822393_SNP [dm3] X_2928360_SNP [dm6]	C	T	3.512e^-4	0.71	INTRON kirre
2L	9463996	2L_9463996_SNP [dm3] 2L_9463996_SNP [dm6]	G	A	3.514e^-4	0.71	UTR_3_PRIME numb DOWNSTREAM numb
2R	17181957	2R_17181957_SNP [dm3] 2R_21294452_SNP [dm6]	G	A	3.524e^-4	0.71	SYNONYMOUS_CODING CG9752 UPSTREAM Sgf29 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	14706091	2R_14706091_SNP [dm3] 2R_18818586_SNP [dm6]	G	A	3.536e^-4	0.71	UPSTREAM Phb2 INTERGENIC
2L	7635384	2L_7635384_SNP [dm3] 2L_7635384_SNP [dm6]	T	A	3.537e^-4	0.71	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	2024772	3L_2024772_SNP [dm3] 3L_2024772_SNP [dm6]	T	G	3.541e^-4	0.71	INTERGENIC
2R	11732927	2R_11732927_SNP [dm3] 2R_15845422_SNP [dm6]	C	T	3.545e^-4	0.71	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8611854	2L_8611854_SNP [dm3] 2L_8611854_SNP [dm6]	C	G	3.547e^-4	0.71	INTRON Sema-1a
2L	5868327	2L_5868327_SNP [dm3] 2L_5868327_SNP [dm6]	C	T	3.548e^-4	0.71	INTRON rau	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	994495	2L_994495_SNP [dm3] 2L_994495_SNP [dm6]	C	T	3.551e^-4	0.71	INTERGENIC
X	2822497	X_2822497_SNP [dm3] X_2928464_SNP [dm6]	A	T	3.555e^-4	0.71	INTRON kirre
2R	8912296	2R_8912296_SNP [dm3] 2R_13024791_SNP [dm6]	A	G	3.555e^-4	0.71	INTERGENIC
2R	8912300	2R_8912300_SNP [dm3] 2R_13024795_SNP [dm6]	T	A	3.555e^-4	0.71	INTERGENIC
X	11055364	X_11055364_SNP [dm3] X_11161331_SNP [dm6]	A	G	3.560e^-4	0.71	SYNONYMOUS_CODING Dlic
3L	11643988	3L_11643988_SNP [dm3] 3L_11650888_SNP [dm6]	T	A	3.565e^-4	0.71	UTR_3_PRIME CG32085 DOWNSTREAM CG7339
2L	11786700	2L_11786700_SNP [dm3] 2L_11786700_SNP [dm6]	G	C	3.572e^-4	0.71	INTERGENIC
X	6905232	X_6905232_SNP [dm3] X_7011199_SNP [dm6]	C	T	3.573e^-4	0.71	UPSTREAM CG32736 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3724045	3L_3724045_SNP [dm3] 3L_3724045_SNP [dm6]	C	T	3.577e^-4	0.71	INTRON CG32264
2L	5800335	2L_5800335_SNP [dm3] 2L_5800335_SNP [dm6]	T	G	3.583e^-4	0.71	UPSTREAM CG9171 DOWNSTREAM CG14005 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	5968193	2R_5968193_SNP [dm3] 2R_10080688_SNP [dm6]	T	C	3.586e^-4	0.71	DOWNSTREAM scaRNA:MeU1b-A234 INTRON egr
2L	14444720	2L_14444720_SNP [dm3] 2L_14444720_SNP [dm6]	T	A	3.587e^-4	0.71	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Ubx
2L	5866587	2L_5866587_SNP [dm3] 2L_5866587_SNP [dm6]	G	A	3.589e^-4	0.71	INTRON rau	TF binding site BDTNP1_TFBS_da
2R	10788778	2R_10788778_SNP [dm3] 2R_14901273_SNP [dm6]	T	C	3.603e^-4	0.711	UTR_3_PRIME Cyp317a1 DOWNSTREAM CG10249 & 1 other
2R	10912554	2R_10912554_SNP [dm3] 2R_15025049_SNP [dm6]	G	A	3.605e^-4	0.711	UPSTREAM CR45256 & 1 other INTRON hbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
4	451888	4_451888_DEL [dm3] 4_431262_DEL [dm6]	TTAGAAATATTTGGT...	T	3.614e^-4	0.711	EXON CR44024	transposable element FlyBase
2L	7975693	2L_7975693_SNP [dm3] 2L_7975693_SNP [dm6]	G	A	3.621e^-4	0.711	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18295639	3L_18295639_SNP [dm3] 3L_18302539_SNP [dm6]	T	A	3.622e^-4	0.711	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	9667834	3L_9667834_SNP [dm3] 3L_9674734_SNP [dm6]	T	C	3.623e^-4	0.711	INTRON fry
2L	3398715	2L_3398715_SNP [dm3] 2L_3398715_SNP [dm6]	G	T	3.625e^-4	0.711	UPSTREAM CR44792 DOWNSTREAM CG34175 INTERGENIC
X	10366440	X_10366440_SNP [dm3] X_10472407_SNP [dm6]	A	C	3.633e^-4	0.711	INTRON nocte	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14281651	X_14281651_SNP [dm3] X_14387618_SNP [dm6]	A	C	3.635e^-4	0.711	INTRON dpr8	TF binding site BDTNP1_TFBS_Med
3R	12875034	3R_12875034_SNP [dm3] 3R_17049312_SNP [dm6]	G	T	3.646e^-4	0.711	DOWNSTREAM Patr-1 INTERGENIC
2R	5160649	2R_5160649_DEL [dm3] 2R_9273144_DEL [dm6]	ACTATA	A	3.655e^-4	0.711	UPSTREAM Pkn INTRON Pkn	TF binding site BDTNP1_TFBS_twi
3L	10846732	3L_10846732_SNP [dm3] 3L_10853632_SNP [dm6]	A	G	3.670e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9631946	2R_9631946_SNP [dm3] 2R_13744441_SNP [dm6]	C	A	3.671e^-4	0.711	INTRON fas
2R	9631947	2R_9631947_SNP [dm3] 2R_13744442_SNP [dm6]	C	A	3.671e^-4	0.711	INTRON fas
X	17256701	X_17256701_SNP [dm3] X_17362668_SNP [dm6]	A	T	3.673e^-4	0.711	INTERGENIC
2R	3495195	2R_3495195_INS [dm3] 2R_7607690_INS [dm6]	C	CTTCATTGTCCGAAGGCCTT...	3.675e^-4	0.711	INTRON CG1358
3R	17850702	3R_17850702_SNP [dm3] 3R_22024980_SNP [dm6]	A	G	3.678e^-4	0.711	SYNONYMOUS_CODING CG6028 DOWNSTREAM mRpL35 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	17850719	3R_17850719_SNP [dm3] 3R_22024997_SNP [dm6]	A	T	3.678e^-4	0.711	NON_SYNONYMOUS_CODING CG6028 DOWNSTREAM mRpL35 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7848746	2L_7848746_SNP [dm3] 2L_7848746_SNP [dm6]	T	C	3.682e^-4	0.711	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	6005565	2L_6005565_SNP [dm3] 2L_6005565_SNP [dm6]	A	T	3.683e^-4	0.711	INTRON Gal EXON CR43866	TF binding site mE1_TFBS_cad
3R	15877846	3R_15877846_SNP [dm3] 3R_20052124_SNP [dm6]	A	G	3.685e^-4	0.711	INTRON CG17193	TF binding site BDTNP1_TFBS_twi
2L	8389640	2L_8389640_SNP [dm3] 2L_8389640_SNP [dm6]	T	G	3.685e^-4	0.711	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
X	11314332	X_11314332_SNP [dm3] X_11420299_SNP [dm6]	G	C	3.686e^-4	0.711	INTERGENIC
2L	7681334	2L_7681334_SNP [dm3] 2L_7681334_SNP [dm6]	A	G	3.688e^-4	0.711	SYNONYMOUS_CODING Myo28B1	TF binding site mE1_TFBS_HSA
3L	9301455	3L_9301455_INS [dm3] 3L_9308355_INS [dm6]	A	TG	3.689e^-4	0.711	INTERGENIC
3L	12422198	3L_12422198_SNP [dm3] 3L_12429098_SNP [dm6]	A	C	3.700e^-4	0.711	INTRON toe
2R	15005805	2R_15005805_SNP [dm3] 2R_19118300_SNP [dm6]	A	T	3.700e^-4	0.711	NON_SYNONYMOUS_CODING 5-HT1A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	1090643	3L_1090643_SNP [dm3] 3L_1090643_SNP [dm6]	T	A	3.704e^-4	0.711	INTRON bab1	regulatory region REDfly_CRMs
2R	18051208	2R_18051208_SNP [dm3] 2R_22163703_SNP [dm6]	T	G	3.704e^-4	0.711	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
2L	7804295	2L_7804295_SNP [dm3] 2L_7804295_SNP [dm6]	A	G	3.717e^-4	0.711	UTR_3_PRIME cdc14 INTRON cdc14
2L	11969832	2L_11969832_SNP [dm3] 2L_11969832_SNP [dm6]	T	A	3.718e^-4	0.711	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7861195	3L_7861195_SNP [dm3] 3L_7868095_SNP [dm6]	A	T	3.729e^-4	0.711	UPSTREAM Pdp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10653235	3L_10653235_SNP [dm3] 3L_10660135_SNP [dm6]	A	G	3.730e^-4	0.711	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18051377	2R_18051377_SNP [dm3] 2R_22163872_SNP [dm6]	A	T	3.733e^-4	0.711	SYNONYMOUS_CODING CG34206 INTRON a
3L	3531083	3L_3531083_INS [dm3] 3L_3531083_INS [dm6]	C	CT	3.733e^-4	0.711	INTRON Eip63E
3L	9376132	3L_9376132_SNP [dm3] 3L_9383032_SNP [dm6]	A	G	3.734e^-4	0.711	DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4791535	X_4791535_SNP [dm3] X_4897502_SNP [dm6]	A	C	3.736e^-4	0.711	INTRON CG42594
3L	13855283	3L_13855283_SNP [dm3] 3L_13862183_SNP [dm6]	A	T	3.743e^-4	0.711	INTRON CG8745
3L	18147174	3L_18147174_SNP [dm3] 3L_18154074_SNP [dm6]	C	T	3.752e^-4	0.711	DOWNSTREAM CG7330 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22555026	3R_22555026_SNP [dm3] 3R_26729304_SNP [dm6]	A	C	3.753e^-4	0.711	UTR_3_PRIME CG14245 DOWNSTREAM CG14245 INTRON CG14246
2L	2357882	2L_2357882_SNP [dm3] 2L_2357882_SNP [dm6]	C	T	3.757e^-4	0.711	UTR_3_PRIME eys UPSTREAM CG9967	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17181180	2R_17181180_SNP [dm3] 2R_21293675_SNP [dm6]	G	A	3.761e^-4	0.711	UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
X	4189883	X_4189883_SNP [dm3] X_4295850_SNP [dm6]	C	T	3.765e^-4	0.711	INTERGENIC
X	20411620	X_20411620_SNP [dm3] X_20540593_SNP [dm6]	T	C	3.765e^-4	0.711	INTRON RunxB
X	18479001	X_18479001_SNP [dm3] X_18584968_SNP [dm6]	C	T	3.769e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12990022	X_12990022_SNP [dm3] X_13095989_SNP [dm6]	G	A	3.770e^-4	0.711	UTR_3_PRIME CG43313 DOWNSTREAM CG43313 & 1 other
2L	19908799	2L_19908799_SNP [dm3] 2L_19908799_SNP [dm6]	C	T	3.774e^-4	0.711	SYNONYMOUS_CODING sick	TF binding site mE1_TFBS_chinmo
2L	13461058	2L_13461058_SNP [dm3] 2L_13461058_SNP [dm6]	A	G	3.777e^-4	0.711	UPSTREAM CG42784 DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA
3R	4118839	3R_4118839_SNP [dm3] 3R_8293117_SNP [dm6]	G	A	3.782e^-4	0.711	NON_SYNONYMOUS_CODING CG31463 DOWNSTREAM CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14157388	2R_14157388_SNP [dm3] 2R_18269883_SNP [dm6]	A	T	3.792e^-4	0.711	INTERGENIC
2L	2584020	2L_2584020_SNP [dm3] 2L_2584020_SNP [dm6]	C	A	3.794e^-4	0.711	SYNONYMOUS_CODING Drp1	TF binding site mE1_TFBS_chinmo
3R	22552374	3R_22552374_SNP [dm3] 3R_26726652_SNP [dm6]	C	A	3.803e^-4	0.711	UTR_3_PRIME CG14244 UPSTREAM CG14246

By genomic position
Variant impact
Gene name

Delta_Alive.at.48h Experience 3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results