DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.414e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.07730
In_2R_NS	0.01832
In_3R_P	0.00958

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	4.7849	0.0914
In_3R_P	8.4231	0.0148

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2757 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	10508071	2R_10508071_SNP [dm3] 2R_14620566_SNP [dm6]	G	T	7.203e^-7	0.454	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	19313601	2L_19313601_SNP [dm3] 2L_19313601_SNP [dm6]	C	T	1.354e^-6	0.454	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10368189	2R_10368189_SNP [dm3] 2R_14480684_SNP [dm6]	G	C	1.736e^-6	0.454	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	15436212	2R_15436212_SNP [dm3] 2R_19548707_SNP [dm6]	C	T	2.021e^-6	0.454	INTRON sm
2R	8669121	2R_8669121_SNP [dm3] 2R_12781616_SNP [dm6]	A	C	2.055e^-6	0.454	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14712384	2R_14712384_SNP [dm3] 2R_18824879_SNP [dm6]	T	C	2.317e^-6	0.454	INTRON CG15097	TF binding site mE1_TFBS_chinmo
X	2484274	X_2484274_SNP [dm3] X_2590241_SNP [dm6]	C	T	2.509e^-6	0.454	INTRON egh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19324776	2L_19324776_SNP [dm3] 2L_19324776_SNP [dm6]	G	T	2.528e^-6	0.454	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11704581	2R_11704581_SNP [dm3] 2R_15817076_SNP [dm6]	A	G	2.879e^-6	0.454	UPSTREAM Zasp52 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16347680	3L_16347680_SNP [dm3] 3L_16354580_SNP [dm6]	T	C	2.880e^-6	0.454	UPSTREAM Pdh DOWNSTREAM CG45057 INTERGENIC
2R	3836505	2R_3836505_SNP [dm3] 2R_7949000_SNP [dm6]	G	C	3.133e^-6	0.454	UPSTREAM CG11165 INTRON CG14764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	20657493	2L_20657493_SNP [dm3] 2L_20657493_SNP [dm6]	C	G	3.194e^-6	0.454	INTRON CG2614	TF binding site mE1_TFBS_sens
2L	7091098	2L_7091098_SNP [dm3] 2L_7091098_SNP [dm6]	T	A	3.267e^-6	0.454	INTERGENIC
X	13416955	X_13416955_SNP [dm3] X_13522922_SNP [dm6]	G	A	3.444e^-6	0.454	SYNONYMOUS_CODING Neto	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10366370	2R_10366370_SNP [dm3] 2R_14478865_SNP [dm6]	T	C	4.284e^-6	0.454	DOWNSTREAM CR44462 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9100819	2L_9100819_SNP [dm3] 2L_9100819_SNP [dm6]	A	G	4.344e^-6	0.454	INTERGENIC
2R	10521406	2R_10521406_SNP [dm3] 2R_14633901_SNP [dm6]	G	C	5.030e^-6	0.454	INTERGENIC
2R	2066038	2R_2066038_SNP [dm3] 2R_6178533_SNP [dm6]	T	A	5.053e^-6	0.454	DOWNSTREAM tRNA:R2:42Aa INTERGENIC	regulatory region REDfly_CRMs
2R	15203387	2R_15203387_SNP [dm3] 2R_19315882_SNP [dm6]	T	C	5.091e^-6	0.454	INTRON Rgk1
3R	13816724	3R_13816724_SNP [dm3] 3R_17991002_SNP [dm6]	C	A	6.426e^-6	0.454	INTRON cpo
2L	20642326	2L_20642326_SNP [dm3] 2L_20642326_SNP [dm6]	T	C	6.663e^-6	0.454	UTR_3_PRIME CG17470 DOWNSTREAM Sfp38D
2L	20642559	2L_20642559_SNP [dm3] 2L_20642559_SNP [dm6]	C	T	6.663e^-6	0.454	SYNONYMOUS_CODING CG17470 DOWNSTREAM Sfp38D & 1 other
2L	20647754	2L_20647754_SNP [dm3] 2L_20647754_SNP [dm6]	C	T	6.663e^-6	0.454	UPSTREAM snoRNA:Me28S-C2645a & 2 others DOWNSTREAM CG2608 EXON Uhg3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_run
2R	10254286	2R_10254286_SNP [dm3] 2R_14366781_SNP [dm6]	T	A	6.685e^-6	0.454	UPSTREAM CG34442 DOWNSTREAM CG34184 INTERGENIC
X	10904056	X_10904056_SNP [dm3] X_11010023_SNP [dm6]	C	T	6.713e^-6	0.454	INTRON CG42339
2R	15060790	2R_15060790_DEL [dm3] 2R_19173285_DEL [dm6]	TCCT	T	6.791e^-6	0.454	INTRON CG10737
2R	10508075	2R_10508075_SNP [dm3] 2R_14620570_SNP [dm6]	A	T	7.016e^-6	0.454	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	20658019	2L_20658019_SNP [dm3] 2L_20658019_SNP [dm6]	G	A	7.147e^-6	0.454	SYNONYMOUS_CODING CG2614
2R	17819140	2R_17819140_SNP [dm3] 2R_21931635_SNP [dm6]	T	C	7.152e^-6	0.454	INTRON Fili
2L	19324779	2L_19324779_SNP [dm3] 2L_19324779_SNP [dm6]	G	A	7.261e^-6	0.454	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20650009	2L_20650009_SNP [dm3] 2L_20650009_SNP [dm6]	T	C	7.671e^-6	0.458	UTR_3_PRIME CG18810 UPSTREAM CG2611 DOWNSTREAM bru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10508081	2R_10508081_SNP [dm3] 2R_14620576_SNP [dm6]	C	T	7.819e^-6	0.458	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10254237	2R_10254237_SNP [dm3] 2R_14366732_SNP [dm6]	G	T	8.929e^-6	0.477	UPSTREAM CG34442 DOWNSTREAM CG34184 INTERGENIC
2L	15262327	2L_15262327_INS [dm3] 2L_15262327_INS [dm6]	T	TGGATGT	8.954e^-6	0.477	DOWNSTREAM yuri INTRON yuri
2R	10749489	2R_10749489_SNP [dm3] 2R_14861984_SNP [dm6]	C	T	9.233e^-6	0.477	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8503867	3L_8503867_SNP [dm3] 3L_8510767_SNP [dm6]	G	A	9.390e^-6	0.477	NON_SYNONYMOUS_CODING CG6745	TF binding site mE1_TFBS_sens
2R	15864853	2R_15864853_SNP [dm3] 2R_19977348_SNP [dm6]	G	C	9.412e^-6	0.477	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4437738	3R_4437738_SNP [dm3] 3R_8612016_SNP [dm6]	C	A	1.042e^-5	0.478	INTRON 5-HT2B
2L	838169	2L_838169_SNP [dm3] 2L_838169_SNP [dm6]	G	A	1.070e^-5	0.478	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19315233	2L_19315233_SNP [dm3] 2L_19315233_SNP [dm6]	C	T	1.113e^-5	0.478	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3930568	3L_3930568_SNP [dm3] 3L_3930568_SNP [dm6]	G	T	1.140e^-5	0.478	INTRON Eip63F-1
2L	838191	2L_838191_SNP [dm3] 2L_838191_SNP [dm6]	C	T	1.148e^-5	0.478	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14970076	2R_14970076_SNP [dm3] 2R_19082571_SNP [dm6]	A	G	1.153e^-5	0.478	INTRON 5-HT1A
2L	18628743	2L_18628743_SNP [dm3] 2L_18628743_SNP [dm6]	A	T	1.184e^-5	0.478	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20637922	2L_20637922_DEL [dm3] 2L_20637922_DEL [dm6]	CCCCCGATATGCCTCATC...	C	1.204e^-5	0.478	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	20661940	2L_20661940_SNP [dm3] 2L_20661940_SNP [dm6]	C	T	1.234e^-5	0.478	INTRON CG31678	TF binding site mE1_TFBS_cad
2L	19995970	2L_19995970_SNP [dm3] 2L_19995970_SNP [dm6]	G	A	1.314e^-5	0.478	INTRON CG43861
2L	2277015	2L_2277015_SNP [dm3] 2L_2277015_SNP [dm6]	G	C	1.389e^-5	0.478	INTRON CR43753
2R	10252498	2R_10252498_SNP [dm3] 2R_14364993_SNP [dm6]	C	T	1.413e^-5	0.478	SPLICE_SITE_REGION Tfb1 UPSTREAM CG34184 INTRON Tfb1	TF binding site mE1_TFBS_sens
3R	25223305	3R_25223305_SNP [dm3] 3R_29397583_SNP [dm6]	G	A	1.416e^-5	0.478	INTRON Ptp99A
2L	19320516	2L_19320516_SNP [dm3] 2L_19320516_SNP [dm6]	T	C	1.420e^-5	0.478	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	19337989	2L_19337989_SNP [dm3] 2L_19337989_SNP [dm6]	C	G	1.424e^-5	0.478	DOWNSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8544831	2R_8544831_SNP [dm3] 2R_12657326_SNP [dm6]	G	A	1.426e^-5	0.478	NON_SYNONYMOUS_CODING CG8646
3L	12176486	3L_12176486_SNP [dm3] 3L_12183386_SNP [dm6]	T	G	1.435e^-5	0.478	DOWNSTREAM CAH2 INTERGENIC
2L	8363433	2L_8363433_DEL [dm3] 2L_8363433_DEL [dm6]	CC	C	1.545e^-5	0.478	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	11238302	3L_11238302_SNP [dm3] 3L_11245202_SNP [dm6]	A	T	1.552e^-5	0.478	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	19589535	X_19589535_SNP [dm3] X_19695502_SNP [dm6]	T	C	1.553e^-5	0.478	UPSTREAM CG14229 INTERGENIC	transposable element FlyBase
2R	10676596	2R_10676596_SNP [dm3] 2R_14789091_SNP [dm6]	G	T	1.591e^-5	0.478	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10621372	2R_10621372_SNP [dm3] 2R_14733867_SNP [dm6]	C	A	1.605e^-5	0.478	INTERGENIC
2L	20642574	2L_20642574_SNP [dm3] 2L_20642574_SNP [dm6]	G	T	1.617e^-5	0.478	SYNONYMOUS_CODING CG17470 DOWNSTREAM Sfp38D & 1 other
2L	838163	2L_838163_SNP [dm3] 2L_838163_SNP [dm6]	G	A	1.634e^-5	0.478	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13390597	2R_13390597_DEL [dm3] 2R_17503092_DEL [dm6]	AA	A	1.661e^-5	0.478	INTRON CG43164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15861441	2R_15861441_SNP [dm3] 2R_19973936_SNP [dm6]	A	G	1.666e^-5	0.478	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10254289	2R_10254289_SNP [dm3] 2R_14366784_SNP [dm6]	C	T	1.668e^-5	0.478	UPSTREAM CG34442 DOWNSTREAM CG34184 INTERGENIC
2R	10254338	2R_10254338_SNP [dm3] 2R_14366833_SNP [dm6]	T	A	1.668e^-5	0.478	UTR_5_PRIME CG34442 DOWNSTREAM CG34184
2L	5017756	2L_5017756_SNP [dm3] 2L_5017756_SNP [dm6]	A	G	1.687e^-5	0.478	SYNONYMOUS_CODING vkg	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	838148	2L_838148_SNP [dm3] 2L_838148_SNP [dm6]	A	G	1.707e^-5	0.478	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10608747	2R_10608747_SNP [dm3] 2R_14721242_SNP [dm6]	C	T	1.843e^-5	0.495	INTERGENIC	TF binding site mE1_TFBS_inv
3R	3186884	3R_3186884_SNP [dm3] 3R_7361162_SNP [dm6]	T	A	1.905e^-5	0.495	DOWNSTREAM CG17944 INTERGENIC
2L	20667829	2L_20667829_INS [dm3] 2L_20667829_INS [dm6]	G	GAATGAAAAAACTTTATAAA...	1.929e^-5	0.495	INTRON CG31678 EXON CR45004
3R	20266106	3R_20266106_SNP [dm3] 3R_24440384_SNP [dm6]	T	C	1.942e^-5	0.495	INTRON nAChRalpha1 EXON CR43455
X	20573458	X_20573458_SNP [dm3] X_20702431_SNP [dm6]	A	C	1.956e^-5	0.495	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10705677	2R_10705677_SNP [dm3] 2R_14818172_SNP [dm6]	G	T	1.976e^-5	0.495	NON_SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10719564	2R_10719564_SNP [dm3] 2R_14832059_SNP [dm6]	G	A	1.976e^-5	0.495	UPSTREAM CG10205 INTERGENIC
2R	10180722	2R_10180722_SNP [dm3] 2R_14293217_SNP [dm6]	G	A	1.987e^-5	0.495	UTR_3_PRIME Ih DOWNSTREAM Ih INTRON Ih
2R	10700525	2R_10700525_SNP [dm3] 2R_14813020_SNP [dm6]	G	A	2.005e^-5	0.495	INTERGENIC	regulatory region REDfly_CRMs
2R	10715639	2R_10715639_SNP [dm3] 2R_14828134_SNP [dm6]	A	T	2.070e^-5	0.5	INTERGENIC
2R	10713301	2R_10713301_SNP [dm3] 2R_14825796_SNP [dm6]	T	G	2.079e^-5	0.5	INTERGENIC
X	5447715	X_5447715_SNP [dm3] X_5553682_SNP [dm6]	T	C	2.116e^-5	0.502	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
X	20483478	X_20483478_SNP [dm3] X_20612451_SNP [dm6]	G	C	2.154e^-5	0.505	INTRON RunxA
2L	9468190	2L_9468190_SNP [dm3] 2L_9468190_SNP [dm6]	A	G	2.272e^-5	0.526	INTERGENIC
2L	19332081	2L_19332081_SNP [dm3] 2L_19332081_SNP [dm6]	C	A	2.346e^-5	0.53	INTERGENIC
2L	20629354	2L_20629354_SNP [dm3] 2L_20629354_SNP [dm6]	A	T	2.367e^-5	0.53	INTERGENIC
2R	10721948	2R_10721948_SNP [dm3] 2R_14834443_SNP [dm6]	C	A	2.375e^-5	0.53	DOWNSTREAM CG10205 INTERGENIC
X	3359608	X_3359608_SNP [dm3] X_3465575_SNP [dm6]	T	C	2.423e^-5	0.53	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
2L	20642553	2L_20642553_SNP [dm3] 2L_20642553_SNP [dm6]	C	T	2.451e^-5	0.53	SYNONYMOUS_CODING CG17470 DOWNSTREAM Sfp38D & 1 other
2R	15060862	2R_15060862_SNP [dm3] 2R_19173357_SNP [dm6]	T	C	2.469e^-5	0.53	INTRON CG10737
2L	19328395	2L_19328395_SNP [dm3] 2L_19328395_SNP [dm6]	A	G	2.515e^-5	0.53	DOWNSTREAM CR45258 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_sens
2L	1968637	2L_1968637_SNP [dm3] 2L_1968637_SNP [dm6]	G	A	2.525e^-5	0.53	INTRON erm
3L	18579014	3L_18579014_SNP [dm3] 3L_18585914_SNP [dm6]	T	A	2.541e^-5	0.53	INTERGENIC
2L	5711478	2L_5711478_SNP [dm3] 2L_5711478_SNP [dm6]	C	T	2.616e^-5	0.532	UPSTREAM CG7236 INTRON CG7236
3L	11787676	3L_11787676_SNP [dm3] 3L_11794576_SNP [dm6]	C	A	2.675e^-5	0.532	SYNONYMOUS_CODING CG10907
2R	4107003	2R_4107003_SNP [dm3] 2R_8219498_SNP [dm6]	A	G	2.678e^-5	0.532	INTRON LRP1
2L	9468250	2L_9468250_SNP [dm3] 2L_9468250_SNP [dm6]	C	G	2.697e^-5	0.532	INTERGENIC
2L	1611238	2L_1611238_SNP [dm3] 2L_1611238_SNP [dm6]	C	A	2.740e^-5	0.532	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7091108	2L_7091108_SNP [dm3] 2L_7091108_SNP [dm6]	T	G	2.748e^-5	0.532	INTERGENIC
2L	7877791	2L_7877791_DEL [dm3] 2L_7877791_DEL [dm6]	ACTGGAATGTACTCA...	A	2.826e^-5	0.532	INTRON spz3
3L	5844652	3L_5844652_SNP [dm3] 3L_5851552_SNP [dm6]	G	A	2.843e^-5	0.532	INTERGENIC
3R	20266108	3R_20266108_SNP [dm3] 3R_24440386_SNP [dm6]	C	A	2.868e^-5	0.532	INTRON nAChRalpha1 EXON CR43455
2L	16387235	2L_16387235_DEL [dm3] 2L_16387235_DEL [dm6]	CT	C	2.880e^-5	0.532	INTERGENIC
X	3359611	X_3359611_SNP [dm3] X_3465578_SNP [dm6]	T	C	2.908e^-5	0.532	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
X	3359610	X_3359610_SNP [dm3] X_3465577_SNP [dm6]	G	C	2.925e^-5	0.532	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
X	21294623	X_21294623_SNP [dm3] X_21423596_SNP [dm6]	T	C	2.947e^-5	0.532	UTR_3_PRIME CG42343
X	20483534	X_20483534_SNP [dm3] X_20612507_SNP [dm6]	C	T	3.055e^-5	0.532	INTRON RunxA
2R	15815189	2R_15815189_SNP [dm3] 2R_19927684_SNP [dm6]	T	G	3.072e^-5	0.532	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	19336830	2L_19336830_SNP [dm3] 2L_19336830_SNP [dm6]	G	T	3.158e^-5	0.532	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6680152	2L_6680152_SNP [dm3] 2L_6680152_SNP [dm6]	T	G	3.165e^-5	0.532	INTRON Nhe3
3L	12176593	3L_12176593_SNP [dm3] 3L_12183493_SNP [dm6]	G	C	3.178e^-5	0.532	DOWNSTREAM CAH2 INTERGENIC
3L	1276765	3L_1276765_SNP [dm3] 3L_1276765_SNP [dm6]	G	A	3.195e^-5	0.532	INTRON CG32333
2L	2584020	2L_2584020_SNP [dm3] 2L_2584020_SNP [dm6]	C	A	3.204e^-5	0.532	SYNONYMOUS_CODING Drp1	TF binding site mE1_TFBS_chinmo
X	10822855	X_10822855_SNP [dm3] X_10928822_SNP [dm6]	C	T	3.206e^-5	0.532	INTRON CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	20483467	X_20483467_SNP [dm3] X_20612440_SNP [dm6]	A	G	3.219e^-5	0.532	INTRON RunxA
2L	20720538	2L_20720538_SNP [dm3] 2L_20720538_SNP [dm6]	G	A	3.238e^-5	0.532	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9096056	2L_9096056_SNP [dm3] 2L_9096056_SNP [dm6]	A	T	3.257e^-5	0.532	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13924010	3R_13924010_SNP [dm3] 3R_18098288_SNP [dm6]	G	T	3.282e^-5	0.532	INTRON sr
2R	14160216	2R_14160216_SNP [dm3] 2R_18272711_SNP [dm6]	T	A	3.300e^-5	0.532	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20951251	X_20951251_INS [dm3] X_21080224_INS [dm6]	A	AGCTTTCAATCATGGATGAA...	3.318e^-5	0.532	INTRON bves	TF binding site BDTNP1_TFBS_dl
2L	9096347	2L_9096347_SNP [dm3] 2L_9096347_SNP [dm6]	T	C	3.410e^-5	0.542	INTERGENIC	TF binding site mE1_TFBS_sens
2R	10672683	2R_10672683_SNP [dm3] 2R_14785178_SNP [dm6]	C	A	3.496e^-5	0.547	INTRON kn
2L	7876729	2L_7876729_SNP [dm3] 2L_7876729_SNP [dm6]	C	A	3.497e^-5	0.547	INTRON spz3
2R	17111217	2R_17111217_SNP [dm3] 2R_21223712_SNP [dm6]	G	A	3.530e^-5	0.547	SYNONYMOUS_CODING ASPP INTRON ASPP
2R	10846124	2R_10846124_SNP [dm3] 2R_14958619_SNP [dm6]	T	C	3.643e^-5	0.547	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21293592	X_21293592_SNP [dm3] X_21422565_SNP [dm6]	T	C	3.647e^-5	0.547	UTR_3_PRIME CG42343	TF binding site mE1_TFBS_cnc
X	9436935	X_9436935_SNP [dm3] X_9542902_SNP [dm6]	G	A	3.652e^-5	0.547	INTRON CG32700
2L	2277045	2L_2277045_SNP [dm3] 2L_2277045_SNP [dm6]	C	T	3.669e^-5	0.547	INTRON CR43753
3R	15955421	3R_15955421_SNP [dm3] 3R_20129699_SNP [dm6]	G	A	3.683e^-5	0.547	INTERGENIC
3L	15658324	3L_15658324_SNP [dm3] 3L_15665224_SNP [dm6]	T	G	3.707e^-5	0.547	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5017832	2L_5017832_SNP [dm3] 2L_5017832_SNP [dm6]	T	A	3.791e^-5	0.551	NON_SYNONYMOUS_CODING vkg	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10273607	X_10273607_SNP [dm3] X_10379574_SNP [dm6]	G	A	3.855e^-5	0.551	SYNONYMOUS_CODING CG32681 INTRON CG17841
2L	6817210	2L_6817210_SNP [dm3] 2L_6817210_SNP [dm6]	T	C	3.869e^-5	0.551	INTERGENIC
X	14081354	X_14081354_SNP [dm3] X_14187321_SNP [dm6]	T	C	3.923e^-5	0.551	SYNONYMOUS_CODING CG12481
2L	838174	2L_838174_SNP [dm3] 2L_838174_SNP [dm6]	A	G	3.948e^-5	0.551	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	838179	2L_838179_SNP [dm3] 2L_838179_SNP [dm6]	T	C	3.948e^-5	0.551	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10982179	3L_10982179_SNP [dm3] 3L_10989079_SNP [dm6]	A	T	3.955e^-5	0.551	INTRON klu
2L	1606492	2L_1606492_SNP [dm3] 2L_1606492_SNP [dm6]	G	A	3.987e^-5	0.551	SYNONYMOUS_CODING haf INTRON CG31935
2L	9089726	2L_9089726_SNP [dm3] 2L_9089726_SNP [dm6]	A	G	4.058e^-5	0.551	DOWNSTREAM Toll-4 INTERGENIC
X	5864566	X_5864566_SNP [dm3] X_5970533_SNP [dm6]	G	T	4.109e^-5	0.551	INTRON Grip	TF binding site BDTNP1_TFBS_da
3L	3948344	3L_3948344_SNP [dm3] 3L_3948344_SNP [dm6]	C	T	4.132e^-5	0.551	DOWNSTREAM CG14983 INTRON CG10853
2L	14425084	2L_14425084_SNP [dm3] 2L_14425084_SNP [dm6]	T	A	4.163e^-5	0.551	INTRON Cpr35B	TF binding site mE1_TFBS_chinmo
2L	7877827	2L_7877827_SNP [dm3] 2L_7877827_SNP [dm6]	C	T	4.165e^-5	0.551	INTRON spz3
2L	9097057	2L_9097057_SNP [dm3] 2L_9097057_SNP [dm6]	C	T	4.166e^-5	0.551	UPSTREAM CG31609 INTERGENIC
2L	2553484	2L_2553484_SNP [dm3] 2L_2553484_SNP [dm6]	C	A	4.206e^-5	0.551	UPSTREAM CG3515 INTERGENIC
2R	10086391	2R_10086391_SNP [dm3] 2R_14198886_SNP [dm6]	T	A	4.307e^-5	0.551	UTR_3_PRIME VGAT DOWNSTREAM CG30069
X	6679937	X_6679937_SNP [dm3] X_6785904_SNP [dm6]	G	A	4.312e^-5	0.551	INTRON C3G
2L	2559816	2L_2559816_SNP [dm3] 2L_2559816_SNP [dm6]	G	T	4.320e^-5	0.551	INTERGENIC
X	6090573	X_6090573_SNP [dm3] X_6196540_SNP [dm6]	A	C	4.379e^-5	0.551	UPSTREAM CG32750 DOWNSTREAM CG32751 INTERGENIC
3L	18074235	3L_18074235_SNP [dm3] 3L_18081135_SNP [dm6]	A	G	4.381e^-5	0.551	EXON CR43253
2R	10252469	2R_10252469_SNP [dm3] 2R_14364964_SNP [dm6]	A	C	4.443e^-5	0.551	UPSTREAM CG34184 INTRON Tfb1	TF binding site mE1_TFBS_sens
3R	4439909	3R_4439909_SNP [dm3] 3R_8614187_SNP [dm6]	G	T	4.445e^-5	0.551	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
3L	11840221	3L_11840221_SNP [dm3] 3L_11847121_SNP [dm6]	T	C	4.463e^-5	0.551	DOWNSTREAM CG12521 INTERGENIC
X	22107047	X_22107047_SNP [dm3] X_22705211_SNP [dm6]	C	T	4.471e^-5	0.551	INTRON CR44997	transposable element FlyBase
2L	20637069	2L_20637069_SNP [dm3] 2L_20637069_SNP [dm6]	T	C	4.528e^-5	0.551	INTERGENIC	transposable element FlyBase
3L	14247280	3L_14247280_SNP [dm3] 3L_14254180_SNP [dm6]	C	G	4.543e^-5	0.551	INTERGENIC
2L	1611237	2L_1611237_SNP [dm3] 2L_1611237_SNP [dm6]	A	G	4.546e^-5	0.551	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10585346	2R_10585346_SNP [dm3] 2R_14697841_SNP [dm6]	C	T	4.571e^-5	0.551	INTRON mspo
3L	3931917	3L_3931917_SNP [dm3] 3L_3931917_SNP [dm6]	C	G	4.582e^-5	0.551	INTRON Eip63F-1
2R	15539624	2R_15539624_SNP [dm3] 2R_19652119_SNP [dm6]	T	C	4.733e^-5	0.556	UPSTREAM Ir56e DOWNSTREAM CR44212 INTERGENIC
2R	8544754	2R_8544754_SNP [dm3] 2R_12657249_SNP [dm6]	T	C	4.744e^-5	0.556	INTRON CG8646
2R	17819219	2R_17819219_SNP [dm3] 2R_21931714_SNP [dm6]	T	A	4.770e^-5	0.556	INTRON Fili
2R	2024793	2R_2024793_SNP [dm3] 2R_6137288_SNP [dm6]	G	A	4.770e^-5	0.556	UPSTREAM CG14589 INTRON EcR	TF binding site BDTNP1_TFBS_twi
2R	15060864	2R_15060864_SNP [dm3] 2R_19173359_SNP [dm6]	C	T	4.786e^-5	0.556	INTRON CG10737
2R	10252622	2R_10252622_SNP [dm3] 2R_14365117_SNP [dm6]	G	A	4.849e^-5	0.556	SYNONYMOUS_CODING Tfb1 UPSTREAM CG34184
2R	13748880	2R_13748880_SNP [dm3] 2R_17861375_SNP [dm6]	G	A	4.866e^-5	0.556	SYNONYMOUS_CODING CG14490 UTR_3_PRIME thr DOWNSTREAM thr & 1 other	TF binding site mE1_TFBS_HSA
3R	13412774	3R_13412774_SNP [dm3] 3R_17587052_SNP [dm6]	A	G	4.940e^-5	0.556	INTERGENIC
2L	19973614	2L_19973614_SNP [dm3] 2L_19973614_SNP [dm6]	A	C	4.965e^-5	0.556	INTRON CG43861
2R	10265183	2R_10265183_SNP [dm3] 2R_14377678_SNP [dm6]	T	C	4.990e^-5	0.556	UPSTREAM Dh44-R1 INTERGENIC
2R	18071435	2R_18071435_SNP [dm3] 2R_22183930_SNP [dm6]	C	T	4.992e^-5	0.556	SYNONYMOUS_CODING MED16	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7877841	2L_7877841_MNP [dm3] 2L_7877841_MNP [dm6]	TGG	CAA	5.011e^-5	0.556	INTRON spz3
2R	11661653	2R_11661653_SNP [dm3] 2R_15774148_SNP [dm6]	G	C	5.012e^-5	0.556	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2L	20858879	2L_20858879_SNP [dm3] 2L_20858879_SNP [dm6]	T	A	5.068e^-5	0.557	UPSTREAM CG14400 & 1 other INTRON CG9336	TF binding site BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA
X	7008664	X_7008664_SNP [dm3] X_7114631_SNP [dm6]	C	G	5.081e^-5	0.557	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19272390	2L_19272390_DEL [dm3] 2L_19272390_DEL [dm6]	TGTCTGGAGT	T	5.161e^-5	0.562	EXON CR44190
X	4525262	X_4525262_SNP [dm3] X_4631229_SNP [dm6]	C	T	5.184e^-5	0.562	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
2R	10178391	2R_10178391_SNP [dm3] 2R_14290886_SNP [dm6]	C	T	5.267e^-5	0.565	UPSTREAM Ih INTRON Ih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	20545956	2L_20545956_SNP [dm3] 2L_20545956_SNP [dm6]	A	T	5.268e^-5	0.565	INTERGENIC
2R	13390535	2R_13390535_SNP [dm3] 2R_17503030_SNP [dm6]	T	A	5.348e^-5	0.566	INTRON CG43164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	21291610	X_21291610_SNP [dm3] X_21420583_SNP [dm6]	T	A	5.380e^-5	0.566	INTERGENIC
2L	18583055	2L_18583055_SNP [dm3] 2L_18583055_SNP [dm6]	G	C	5.432e^-5	0.566	INTRON Pde11	transposable element FlyBase
2L	7877909	2L_7877909_SNP [dm3] 2L_7877909_SNP [dm6]	T	G	5.436e^-5	0.566	INTRON spz3
3L	5844639	3L_5844639_SNP [dm3] 3L_5851539_SNP [dm6]	C	A	5.460e^-5	0.566	INTERGENIC
2R	1763859	2R_1763859_SNP [dm3] 2R_5876354_SNP [dm6]	C	G	5.481e^-5	0.566	INTERGENIC
3L	4303073	3L_4303073_SNP [dm3] 3L_4303073_SNP [dm6]	T	A	5.489e^-5	0.566	INTRON dyl
2L	6690987	2L_6690987_SNP [dm3] 2L_6690987_SNP [dm6]	C	T	5.544e^-5	0.568	SYNONYMOUS_CODING Tsp	TF binding site mE1_TFBS_cad
2L	2584404	2L_2584404_SNP [dm3] 2L_2584404_SNP [dm6]	G	T	5.578e^-5	0.569	SPLICE_SITE_REGION Drp1 INTRON Drp1
2R	14704169	2R_14704169_SNP [dm3] 2R_18816664_SNP [dm6]	G	A	5.666e^-5	0.57	UPSTREAM CG15096 INTERGENIC
X	20485928	X_20485928_SNP [dm3] X_20614901_SNP [dm6]	G	C	5.703e^-5	0.57	INTRON RunxA	transposable element FlyBase
2R	14669876	2R_14669876_SNP [dm3] 2R_18782371_SNP [dm6]	G	T	5.797e^-5	0.57	UPSTREAM CG15080 INTERGENIC
2R	10585509	2R_10585509_SNP [dm3] 2R_14698004_SNP [dm6]	G	T	5.798e^-5	0.57	INTRON mspo
2R	17022312	2R_17022312_SNP [dm3] 2R_21134807_SNP [dm6]	C	T	5.816e^-5	0.57	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4340074	3R_4340074_SNP [dm3] 3R_8514352_SNP [dm6]	T	C	5.818e^-5	0.57	INTERGENIC
3L	13146924	3L_13146924_SNP [dm3] 3L_13153824_SNP [dm6]	T	C	5.860e^-5	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	9935347	3L_9935347_SNP [dm3] 3L_9942247_SNP [dm6]	T	C	5.900e^-5	0.57	INTRON CG34356
2L	8649846	2L_8649846_DEL [dm3] 2L_8649846_DEL [dm6]	CC	C	5.921e^-5	0.57	INTRON Sema-1a
2R	11711648	2R_11711648_SNP [dm3] 2R_15824143_SNP [dm6]	C	A	5.932e^-5	0.57	INTRON tun	TF binding site mE1_TFBS_cad
3L	18074160	3L_18074160_INS [dm3] 3L_18081060_INS [dm6]	T	TA	5.965e^-5	0.57	DOWNSTREAM CR43253 INTERGENIC
2L	20624935	2L_20624935_SNP [dm3] 2L_20624935_SNP [dm6]	T	C	5.981e^-5	0.57	INTRON CR44909
X	11164117	X_11164117_SNP [dm3] X_11270084_SNP [dm6]	T	C	6.079e^-5	0.57	INTRON CG44422
2R	13759568	2R_13759568_SNP [dm3] 2R_17872063_SNP [dm6]	T	A	6.079e^-5	0.57	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	20043582	2L_20043582_SNP [dm3] 2L_20043582_SNP [dm6]	T	A	6.116e^-5	0.57	INTRON sNPF
3L	5810288	3L_5810288_SNP [dm3] 3L_5817188_SNP [dm6]	A	T	6.129e^-5	0.57	INTRON vn	regulatory region REDfly_CRMs
3L	11225998	3L_11225998_SNP [dm3] 3L_11232898_SNP [dm6]	T	A	6.205e^-5	0.57	DOWNSTREAM Ir68a INTERGENIC
2L	8368984	2L_8368984_SNP [dm3] 2L_8368984_SNP [dm6]	G	C	6.234e^-5	0.57	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
3L	15515308	3L_15515308_DEL [dm3] 3L_15522208_DEL [dm6]	GTGG	G	6.258e^-5	0.57	UPSTREAM CR43159 DOWNSTREAM yellow-k INTRON CG7945	TF binding site mE1_TFBS_sens
2L	20591022	2L_20591022_SNP [dm3] 2L_20591022_SNP [dm6]	T	C	6.297e^-5	0.57	INTRON CR44909
2R	9636499	2R_9636499_SNP [dm3] 2R_13748994_SNP [dm6]	C	T	6.300e^-5	0.57	UTR_3_PRIME fas
2L	19973628	2L_19973628_SNP [dm3] 2L_19973628_SNP [dm6]	T	C	6.334e^-5	0.57	INTRON CG43861
2R	10701426	2R_10701426_SNP [dm3] 2R_14813921_SNP [dm6]	G	A	6.353e^-5	0.57	INTERGENIC	TF binding site mE1_TFBS_Trl
X	13010003	X_13010003_SNP [dm3] X_13115970_SNP [dm6]	C	G	6.355e^-5	0.57	INTRON CG42237
3R	2560546	3R_2560546_SNP [dm3] 3R_6734824_SNP [dm6]	A	T	6.428e^-5	0.57	INTRON pb	TF binding site BDTNP1_TFBS_twi
X	9194186	X_9194186_SNP [dm3] X_9300153_SNP [dm6]	T	C	6.447e^-5	0.57	INTRON lz
2R	10251028	2R_10251028_SNP [dm3] 2R_14363523_SNP [dm6]	T	C	6.497e^-5	0.57	DOWNSTREAM Arc2 INTRON Tfb1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6601028	2L_6601028_SNP [dm3] 2L_6601028_SNP [dm6]	C	G	6.506e^-5	0.57	UTR_5_PRIME CG11319
3L	11649274	3L_11649274_SNP [dm3] 3L_11656174_SNP [dm6]	G	T	6.557e^-5	0.57	UPSTREAM mir-274 INTRON CG32085
3L	11224898	3L_11224898_SNP [dm3] 3L_11231798_SNP [dm6]	T	A	6.661e^-5	0.57	UPSTREAM CR45405 INTERGENIC
2R	10601593	2R_10601593_SNP [dm3] 2R_14714088_SNP [dm6]	A	C	6.737e^-5	0.57	UPSTREAM mspo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	20545580	2L_20545580_SNP [dm3] 2L_20545580_SNP [dm6]	A	G	6.746e^-5	0.57	INTERGENIC
3R	13112766	3R_13112766_SNP [dm3] 3R_17287044_SNP [dm6]	A	G	6.772e^-5	0.57	UPSTREAM CR43490 EXON CR43489
2R	13948546	2R_13948546_DEL [dm3] 2R_18061041_DEL [dm6]	AAAA	TCT	6.798e^-5	0.57	INTERGENIC
3R	4439934	3R_4439934_SNP [dm3] 3R_8614212_SNP [dm6]	G	A	6.809e^-5	0.57	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
3L	9935348	3L_9935348_SNP [dm3] 3L_9942248_SNP [dm6]	T	C	6.831e^-5	0.57	INTRON CG34356
X	10822826	X_10822826_SNP [dm3] X_10928793_SNP [dm6]	A	T	6.901e^-5	0.57	INTRON CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	10822840	X_10822840_SNP [dm3] X_10928807_SNP [dm6]	C	T	6.901e^-5	0.57	INTRON CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	20085186	3L_20085186_SNP [dm3] 3L_20092086_SNP [dm6]	C	A	6.902e^-5	0.57	INTERGENIC
X	2876744	X_2876744_SNP [dm3] X_2982711_SNP [dm6]	T	C	6.956e^-5	0.57	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11787667	3L_11787667_SNP [dm3] 3L_11794567_SNP [dm6]	T	C	6.964e^-5	0.57	SYNONYMOUS_CODING CG10907
2L	9106101	2L_9106101_SNP [dm3] 2L_9106101_SNP [dm6]	T	C	7.052e^-5	0.57	INTERGENIC
2L	8647703	2L_8647703_SNP [dm3] 2L_8647703_SNP [dm6]	C	G	7.057e^-5	0.57	INTRON Sema-1a
3L	2805775	3L_2805775_DEL [dm3] 3L_2805775_DEL [dm6]	TGCATTTTTT	T	7.082e^-5	0.57	INTRON CG43444
2L	9080906	2L_9080906_SNP [dm3] 2L_9080906_SNP [dm6]	A	G	7.113e^-5	0.57	INTERGENIC
2L	9705445	2L_9705445_SNP [dm3] 2L_9705445_SNP [dm6]	G	A	7.129e^-5	0.57	INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	15507729	2L_15507729_SNP [dm3] 2L_15507729_SNP [dm6]	C	T	7.152e^-5	0.57	INTERGENIC
2L	8389638	2L_8389638_SNP [dm3] 2L_8389638_SNP [dm6]	A	T	7.161e^-5	0.57	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2L	20661213	2L_20661213_SNP [dm3] 2L_20661213_SNP [dm6]	G	A	7.186e^-5	0.57	INTRON CG31678	TF binding site mE1_TFBS_cad
2L	9261094	2L_9261094_SNP [dm3] 2L_9261094_SNP [dm6]	C	T	7.191e^-5	0.57	DOWNSTREAM CR45262 INTRON Ggamma30A
2L	9261095	2L_9261095_SNP [dm3] 2L_9261095_SNP [dm6]	C	T	7.191e^-5	0.57	DOWNSTREAM CR45262 INTRON Ggamma30A
2R	10791883	2R_10791883_SNP [dm3] 2R_14904378_SNP [dm6]	C	T	7.239e^-5	0.57	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_chinmo
2L	2553554	2L_2553554_SNP [dm3] 2L_2553554_SNP [dm6]	T	C	7.306e^-5	0.57	UPSTREAM CG3515 INTERGENIC
2L	19417050	2L_19417050_SNP [dm3] 2L_19417050_SNP [dm6]	A	G	7.337e^-5	0.57	UPSTREAM Lectin-galC1 & 1 other INTRON Pax	TF binding site mE1_TFBS_HSA
X	12997642	X_12997642_SNP [dm3] X_13103609_SNP [dm6]	T	A	7.338e^-5	0.57	INTRON CG43313
3R	26866821	3R_26866821_SNP [dm3] 3R_31041099_SNP [dm6]	G	A	7.364e^-5	0.57	INTRON CanA1
2R	10250859	2R_10250859_SNP [dm3] 2R_14363354_SNP [dm6]	A	G	7.367e^-5	0.57	UTR_5_PRIME Tfb1 DOWNSTREAM Arc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1611319	2L_1611319_SNP [dm3] 2L_1611319_SNP [dm6]	T	A	7.396e^-5	0.57	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	15686453	3L_15686453_SNP [dm3] 3L_15693353_SNP [dm6]	G	A	7.398e^-5	0.57	INTERGENIC	silencer mE1_HDAC_PRE
2L	20637793	2L_20637793_SNP [dm3] 2L_20637793_SNP [dm6]	C	A	7.436e^-5	0.57	INTERGENIC	transposable element FlyBase
2L	2558828	2L_2558828_SNP [dm3] 2L_2558828_SNP [dm6]	G	A	7.470e^-5	0.57	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15095024	3R_15095024_SNP [dm3] 3R_19269302_SNP [dm6]	A	C	7.475e^-5	0.57	INTERGENIC
2R	10505737	2R_10505737_SNP [dm3] 2R_14618232_SNP [dm6]	A	T	7.506e^-5	0.57	UPSTREAM Sec61beta & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14535206	2R_14535206_SNP [dm3] 2R_18647701_SNP [dm6]	C	G	7.532e^-5	0.57	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2R	11293727	2R_11293727_SNP [dm3] 2R_15406222_SNP [dm6]	A	C	7.613e^-5	0.572	INTRON CG43729
3L	11900277	3L_11900277_SNP [dm3] 3L_11907177_SNP [dm6]	G	A	7.658e^-5	0.572	INTRON CG44837
2R	10254359	2R_10254359_DEL [dm3] 2R_14366854_DEL [dm6]	TT	T	7.695e^-5	0.572	UTR_5_PRIME CG34442 DOWNSTREAM CG34184
X	10113042	X_10113042_SNP [dm3] X_10219009_SNP [dm6]	T	C	7.767e^-5	0.572	DOWNSTREAM CR45629 INTRON CG15308 EXON CR45629
2L	2552560	2L_2552560_SNP [dm3] 2L_2552560_SNP [dm6]	G	A	7.807e^-5	0.572	SYNONYMOUS_CODING CG3515
2L	20858049	2L_20858049_SNP [dm3] 2L_20858049_SNP [dm6]	T	G	7.819e^-5	0.572	UPSTREAM CG9336 & 1 other DOWNSTREAM twit INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	10822143	X_10822143_SNP [dm3] X_10928110_SNP [dm6]	C	A	7.854e^-5	0.572	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2693492	X_2693492_SNP [dm3] X_2799459_SNP [dm6]	T	C	7.909e^-5	0.572	INTRON kirre
X	14670839	X_14670839_SNP [dm3] X_14776806_SNP [dm6]	A	C	7.959e^-5	0.572	UTR_5_PRIME CG5347 DOWNSTREAM CG5334
2R	9448793	2R_9448793_DEL [dm3] 2R_13561288_DEL [dm6]	TT	T	8.001e^-5	0.572	DOWNSTREAM CG13334 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	7110601	2L_7110601_SNP [dm3] 2L_7110601_SNP [dm6]	A	T	8.005e^-5	0.572	INTRON Pvf3
X	22107118	X_22107118_SNP [dm3] X_22705282_SNP [dm6]	A	G	8.035e^-5	0.572	INTRON CR44997	transposable element FlyBase
3R	2560596	3R_2560596_SNP [dm3] 3R_6734874_SNP [dm6]	G	T	8.096e^-5	0.572	INTRON pb	TF binding site BDTNP1_TFBS_twi
2L	19973625	2L_19973625_SNP [dm3] 2L_19973625_SNP [dm6]	C	T	8.103e^-5	0.572	INTRON CG43861
2L	6692264	2L_6692264_SNP [dm3] 2L_6692264_SNP [dm6]	T	A	8.109e^-5	0.572	INTRON Tsp
3L	3910422	3L_3910422_SNP [dm3] 3L_3910422_SNP [dm6]	T	G	8.132e^-5	0.572	UTR_3_PRIME Eip63F-1 UPSTREAM mge
3L	17077756	3L_17077756_DEL [dm3] 3L_17084656_DEL [dm6]	GG	G	8.162e^-5	0.572	INTRON Rbp6
2L	995434	2L_995434_SNP [dm3] 2L_995434_SNP [dm6]	A	G	8.164e^-5	0.572	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	995436	2L_995436_SNP [dm3] 2L_995436_SNP [dm6]	C	T	8.164e^-5	0.572	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1426960	X_1426960_SNP [dm3] X_1532927_SNP [dm6]	A	T	8.175e^-5	0.572	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	14343428	3L_14343428_SNP [dm3] 3L_14350328_SNP [dm6]	G	C	8.231e^-5	0.573	INTRON fz
3L	13022507	3L_13022507_SNP [dm3] 3L_13029407_SNP [dm6]	T	G	8.270e^-5	0.573	UPSTREAM CR45172 INTRON CG17672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13948540	2R_13948540_SNP [dm3] 2R_18061035_SNP [dm6]	G	C	8.279e^-5	0.573	INTERGENIC
2L	7877907	2L_7877907_INS [dm3] 2L_7877907_INS [dm6]	T	TTGTTGCTGCATTT...	8.341e^-5	0.575	INTRON spz3
X	11111780	X_11111780_SNP [dm3] X_11217747_SNP [dm6]	G	A	8.366e^-5	0.575	INTERGENIC
2R	12085618	2R_12085618_SNP [dm3] 2R_16198113_SNP [dm6]	T	C	8.393e^-5	0.575	SYNONYMOUS_CODING CG44243 UTR_3_PRIME CG42837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9655686	2R_9655686_DEL [dm3] 2R_13768181_DEL [dm6]	GGAATGG	G	8.475e^-5	0.575	INTERGENIC
2R	12349250	2R_12349250_SNP [dm3] 2R_16461745_SNP [dm6]	A	T	8.477e^-5	0.575	INTERGENIC
2L	9095890	2L_9095890_SNP [dm3] 2L_9095890_SNP [dm6]	T	C	8.517e^-5	0.575	INTERGENIC
2R	16591315	2R_16591315_SNP [dm3] 2R_20703810_SNP [dm6]	C	A	8.519e^-5	0.575	INTRON dpr
3R	26760766	3R_26760766_SNP [dm3] 3R_30935044_SNP [dm6]	A	C	8.612e^-5	0.577	DOWNSTREAM CG15549 INTERGENIC
3R	22369761	3R_22369761_SNP [dm3] 3R_26544039_SNP [dm6]	C	A	8.624e^-5	0.577	INTRON scrib	TF binding site mE1_TFBS_HSA
3L	13731244	3L_13731244_SNP [dm3] 3L_13738144_SNP [dm6]	T	C	8.708e^-5	0.577	INTRON bru-3
3L	5719550	3L_5719550_SNP [dm3] 3L_5726450_SNP [dm6]	C	T	8.767e^-5	0.577	INTRON sif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9468179	2L_9468179_SNP [dm3] 2L_9468179_SNP [dm6]	A	G	8.825e^-5	0.577	INTERGENIC
2L	8647702	2L_8647702_SNP [dm3] 2L_8647702_SNP [dm6]	A	T	8.825e^-5	0.577	INTRON Sema-1a
X	22107085	X_22107085_SNP [dm3] X_22705249_SNP [dm6]	A	T	8.842e^-5	0.577	INTRON CR44997	transposable element FlyBase
2L	17834211	2L_17834211_SNP [dm3] 2L_17834211_SNP [dm6]	A	T	8.891e^-5	0.577	INTRON CadN2	TF binding site mE1_TFBS_HSA
X	6679879	X_6679879_SNP [dm3] X_6785846_SNP [dm6]	G	A	8.897e^-5	0.577	INTRON C3G
2L	2559436	2L_2559436_SNP [dm3] 2L_2559436_SNP [dm6]	G	A	8.907e^-5	0.577	INTERGENIC
3L	8909606	3L_8909606_INS [dm3] 3L_8916506_INS [dm6]	A	ACTTATAACTAA...	8.945e^-5	0.577	DOWNSTREAM CR43970 INTRON Tsp66E
2R	11352258	2R_11352258_SNP [dm3] 2R_15464753_SNP [dm6]	C	A	8.987e^-5	0.577	DOWNSTREAM CG43729 INTRON CG43729
2L	19526764	2L_19526764_SNP [dm3] 2L_19526764_SNP [dm6]	A	G	9.061e^-5	0.577	UTR_5_PRIME CG10137 UPSTREAM CG10166 DOWNSTREAM CG10165	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10601586	2R_10601586_SNP [dm3] 2R_14714081_SNP [dm6]	C	A	9.093e^-5	0.577	UPSTREAM mspo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19272720	2L_19272720_INS [dm3] 2L_19272720_INS [dm6]	T	TATTGCCAGAT...	9.102e^-5	0.577	INTRON CR44190
3L	18834128	3L_18834128_SNP [dm3] 3L_18841028_SNP [dm6]	A	T	9.112e^-5	0.577	UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	10186537	2R_10186537_SNP [dm3] 2R_14299032_SNP [dm6]	C	A	9.174e^-5	0.577	UTR_3_PRIME Ih DOWNSTREAM Ih
2R	14584392	2R_14584392_SNP [dm3] 2R_18696887_SNP [dm6]	C	T	9.266e^-5	0.577	NON_SYNONYMOUS_CODING CG15071 INTRON Sik3
2L	9051182	2L_9051182_SNP [dm3] 2L_9051182_SNP [dm6]	T	G	9.279e^-5	0.577	DOWNSTREAM CG31708 INTERGENIC
2L	1611278	2L_1611278_SNP [dm3] 2L_1611278_SNP [dm6]	T	C	9.319e^-5	0.577	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9922456	3L_9922456_SNP [dm3] 3L_9929356_SNP [dm6]	C	G	9.351e^-5	0.577	INTRON CG34356
2L	20043599	2L_20043599_SNP [dm3] 2L_20043599_SNP [dm6]	A	T	9.394e^-5	0.577	INTRON sNPF
3L	18073603	3L_18073603_SNP [dm3] 3L_18080503_SNP [dm6]	T	C	9.429e^-5	0.577	DOWNSTREAM CR43253 INTERGENIC
X	19586970	X_19586970_SNP [dm3] X_19692937_SNP [dm6]	C	T	9.568e^-5	0.577	SYNONYMOUS_CODING Mer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10986317	3L_10986317_SNP [dm3] 3L_10993217_SNP [dm6]	C	A	9.598e^-5	0.577	INTRON klu
X	19588349	X_19588349_DEL [dm3] X_19694316_DEL [dm6]	CTT	C	9.599e^-5	0.577	UTR_3_PRIME CG14229 UPSTREAM Mer	TF binding site BDTNP1_TFBS_dl
2L	12617541	2L_12617541_SNP [dm3] 2L_12617541_SNP [dm6]	C	T	9.619e^-5	0.577	UPSTREAM nub INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Trl
2R	17022265	2R_17022265_DEL [dm3] 2R_21134760_DEL [dm6]	ACATA	A	9.641e^-5	0.577	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17022278	2R_17022278_SNP [dm3] 2R_21134773_SNP [dm6]	A	C	9.641e^-5	0.577	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10460322	2R_10460322_SNP [dm3] 2R_14572817_SNP [dm6]	C	A	9.685e^-5	0.577	SYNONYMOUS_CODING LamC INTRON ttv
2L	9082465	2L_9082465_SNP [dm3] 2L_9082465_SNP [dm6]	A	T	9.782e^-5	0.577	INTERGENIC
3L	9678679	3L_9678679_SNP [dm3] 3L_9685579_SNP [dm6]	G	T	9.798e^-5	0.577	NON_SYNONYMOUS_CODING CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3930488	3L_3930488_SNP [dm3] 3L_3930488_SNP [dm6]	A	T	9.804e^-5	0.577	INTRON Eip63F-1
3L	13646300	3L_13646300_SNP [dm3] 3L_13653200_SNP [dm6]	T	C	9.868e^-5	0.577	INTRON bru-3
2R	10505290	2R_10505290_INS [dm3] 2R_14617785_INS [dm6]	G	GCG	9.882e^-5	0.577	UPSTREAM Sec61beta INTRON Su_var_2-HP2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	20590965	2L_20590965_SNP [dm3] 2L_20590965_SNP [dm6]	T	A	9.886e^-5	0.577	INTRON CR44909
2L	18426811	2L_18426811_SNP [dm3] 2L_18426811_SNP [dm6]	A	T	9.901e^-5	0.577	INTERGENIC
2L	17829955	2L_17829955_SNP [dm3] 2L_17829955_SNP [dm6]	C	A	9.924e^-5	0.577	INTRON CadN2
3R	4442822	3R_4442822_SNP [dm3] 3R_8617100_SNP [dm6]	G	T	9.940e^-5	0.577	INTRON 5-HT2B	TF binding site mE1_TFBS_inv
2L	1611285	2L_1611285_SNP [dm3] 2L_1611285_SNP [dm6]	T	C	9.966e^-5	0.577	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	18000246	2L_18000246_SNP [dm3] 2L_18000246_SNP [dm6]	A	G	9.983e^-5	0.577	INTERGENIC
2R	10507866	2R_10507866_SNP [dm3] 2R_14620361_SNP [dm6]	G	A	9.990e^-5	0.577	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2558247	2L_2558247_SNP [dm3] 2L_2558247_SNP [dm6]	C	G	9.995e^-5	0.577	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	22107273	X_22107273_SNP [dm3] X_22705437_SNP [dm6]	A	G	9.998e^-5	0.577	INTRON CR44997	transposable element FlyBase
3R	16803600	3R_16803600_SNP [dm3] 3R_20977878_SNP [dm6]	T	C	1.004e^-4	0.577	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3832127	3R_3832127_SNP [dm3] 3R_8006405_SNP [dm6]	C	T	1.006e^-4	0.577	SYNONYMOUS_CODING CG2767 DOWNSTREAM CG2698
X	9790000	X_9790000_SNP [dm3] X_9895967_SNP [dm6]	C	G	1.006e^-4	0.577	INTRON CG15249	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14584297	2R_14584297_SNP [dm3] 2R_18696792_SNP [dm6]	G	A	1.013e^-4	0.577	SYNONYMOUS_CODING CG15071 INTRON Sik3
2L	2562127	2L_2562127_MNP [dm3] 2L_2562127_MNP [dm6]	GAC	TTA	1.017e^-4	0.577	DOWNSTREAM Cyp309a1 INTERGENIC
X	10906821	X_10906821_SNP [dm3] X_11012788_SNP [dm6]	T	A	1.027e^-4	0.577	INTRON CG42339
2R	8545014	2R_8545014_SNP [dm3] 2R_12657509_SNP [dm6]	C	T	1.030e^-4	0.577	SYNONYMOUS_CODING CG8646	TF binding site mE1_TFBS_cad
X	11314267	X_11314267_SNP [dm3] X_11420234_SNP [dm6]	G	A	1.035e^-4	0.577	INTERGENIC
2R	10532196	2R_10532196_SNP [dm3] 2R_14644691_SNP [dm6]	A	T	1.038e^-4	0.577	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8582568	3L_8582568_SNP [dm3] 3L_8589468_SNP [dm6]	T	A	1.041e^-4	0.577	UPSTREAM CG43078 INTRON CG43078
2L	12396734	2L_12396734_SNP [dm3] 2L_12396734_SNP [dm6]	A	C	1.048e^-4	0.577	UTR_3_PRIME bru-2
2L	7496894	2L_7496894_SNP [dm3] 2L_7496894_SNP [dm6]	A	C	1.049e^-4	0.577	UTR_3_PRIME Obp28a UPSTREAM Ziz DOWNSTREAM RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco
X	13010094	X_13010094_SNP [dm3] X_13116061_SNP [dm6]	G	A	1.050e^-4	0.577	INTRON CG42237
2R	13094633	2R_13094633_SNP [dm3] 2R_17207128_SNP [dm6]	G	A	1.050e^-4	0.577	INTERGENIC
2L	9010239	2L_9010239_SNP [dm3] 2L_9010239_SNP [dm6]	T	C	1.051e^-4	0.577	UPSTREAM CG9568 INTERGENIC
2R	10702960	2R_10702960_SNP [dm3] 2R_14815455_SNP [dm6]	A	C	1.056e^-4	0.577	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20622052	2L_20622052_SNP [dm3] 2L_20622052_SNP [dm6]	T	G	1.056e^-4	0.577	INTRON CR44909
2R	6651816	2R_6651816_INS [dm3] 2R_10764311_INS [dm6]	T	TT	1.057e^-4	0.577	INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	10508259	2R_10508259_SNP [dm3] 2R_14620754_SNP [dm6]	A	G	1.057e^-4	0.577	SYNONYMOUS_CODING CG12863 UPSTREAM Uhg5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15107203	2R_15107203_DEL [dm3] 2R_19219698_DEL [dm6]	GCATGGTGGGTCG...	G	1.060e^-4	0.577	INTRON hppy
X	19587676	X_19587676_SNP [dm3] X_19693643_SNP [dm6]	T	A	1.062e^-4	0.577	UPSTREAM Mer DOWNSTREAM CG14229 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	19588490	X_19588490_SNP [dm3] X_19694457_SNP [dm6]	G	A	1.062e^-4	0.577	UTR_3_PRIME CG14229 UPSTREAM Mer	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	19588686	X_19588686_SNP [dm3] X_19694653_SNP [dm6]	C	G	1.062e^-4	0.577	NON_SYNONYMOUS_CODING CG14229	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	9051197	2L_9051197_SNP [dm3] 2L_9051197_SNP [dm6]	C	T	1.067e^-4	0.578	DOWNSTREAM CG31708 INTERGENIC
2R	18165556	2R_18165556_SNP [dm3] 2R_22278051_SNP [dm6]	C	G	1.069e^-4	0.578	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10608696	2R_10608696_SNP [dm3] 2R_14721191_SNP [dm6]	G	A	1.072e^-4	0.578	INTERGENIC
2R	10797256	2R_10797256_SNP [dm3] 2R_14909751_SNP [dm6]	A	G	1.084e^-4	0.583	INTRON CG10249
2L	7621271	2L_7621271_SNP [dm3] 2L_7621271_SNP [dm6]	C	T	1.092e^-4	0.585	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9173359	X_9173359_SNP [dm3] X_9279326_SNP [dm6]	A	G	1.095e^-4	0.585	SYNONYMOUS_CODING c11.1	TF binding site mE1_TFBS_chinmo
2L	20043503	2L_20043503_SNP [dm3] 2L_20043503_SNP [dm6]	T	G	1.098e^-4	0.585	INTRON sNPF
2L	9051093	2L_9051093_SNP [dm3] 2L_9051093_SNP [dm6]	T	G	1.103e^-4	0.586	DOWNSTREAM CG31708 INTERGENIC
2R	10600808	2R_10600808_SNP [dm3] 2R_14713303_SNP [dm6]	C	T	1.113e^-4	0.586	UTR_5_PRIME mspo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18430560	2R_18430560_SNP [dm3] 2R_22543055_SNP [dm6]	T	C	1.115e^-4	0.586	INTRON px	TF binding site mE1_TFBS_cad
X	19588083	X_19588083_SNP [dm3] X_19694050_SNP [dm6]	T	G	1.119e^-4	0.586	UTR_3_PRIME CG14229 UPSTREAM Mer DOWNSTREAM CG14229	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14007387	2L_14007387_SNP [dm3] 2L_14007387_SNP [dm6]	G	A	1.119e^-4	0.586	UPSTREAM CG42692 INTERGENIC
2R	18165536	2R_18165536_SNP [dm3] 2R_22278031_SNP [dm6]	A	C	1.120e^-4	0.586	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10019452	X_10019452_SNP [dm3] X_10125419_SNP [dm6]	T	C	1.125e^-4	0.586	DOWNSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
3L	13836425	3L_13836425_SNP [dm3] 3L_13843325_SNP [dm6]	C	T	1.126e^-4	0.586	UPSTREAM Tsp68C & 1 other INTERGENIC
2L	19973847	2L_19973847_SNP [dm3] 2L_19973847_SNP [dm6]	G	A	1.137e^-4	0.586	INTRON CG43861
3L	6356993	3L_6356993_SNP [dm3] 3L_6363893_SNP [dm6]	A	C	1.139e^-4	0.586	INTERGENIC
3L	11649426	3L_11649426_SNP [dm3] 3L_11656326_SNP [dm6]	C	T	1.140e^-4	0.586	UPSTREAM mir-274 INTRON CG32085
2L	20043559	2L_20043559_INS [dm3] 2L_20043559_INS [dm6]	AAG	TGATTT	1.140e^-4	0.586	INTRON sNPF
2L	10777774	2L_10777774_SNP [dm3] 2L_10777774_SNP [dm6]	G	A	1.143e^-4	0.586	INTRON CG31869
X	12532280	X_12532280_SNP [dm3] X_12638247_SNP [dm6]	A	T	1.143e^-4	0.586	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
3R	26335409	3R_26335409_SNP [dm3] 3R_30509687_SNP [dm6]	A	T	1.146e^-4	0.586	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG34041 & 1 other
X	15985409	X_15985409_SNP [dm3] X_16091376_SNP [dm6]	T	A	1.177e^-4	0.592	UTR_5_PRIME Tob	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9157209	2L_9157209_SNP [dm3] 2L_9157209_SNP [dm6]	C	T	1.179e^-4	0.592	INTRON CG32982
3L	1013517	3L_1013517_SNP [dm3] 3L_1013517_SNP [dm6]	A	G	1.182e^-4	0.592	INTRON trio
2R	16591837	2R_16591837_SNP [dm3] 2R_20704332_SNP [dm6]	T	C	1.190e^-4	0.592	INTRON dpr
X	3359617	X_3359617_SNP [dm3] X_3465584_SNP [dm6]	A	T	1.194e^-4	0.592	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
3L	16887980	3L_16887980_SNP [dm3] 3L_16894880_SNP [dm6]	C	G	1.197e^-4	0.592	INTRON Lmpt
2R	6565457	2R_6565457_SNP [dm3] 2R_10677952_SNP [dm6]	G	T	1.197e^-4	0.592	INTRON stan
2L	2547517	2L_2547517_SNP [dm3] 2L_2547517_SNP [dm6]	A	G	1.199e^-4	0.592	INTERGENIC
2L	9326790	2L_9326790_DEL [dm3] 2L_9326790_DEL [dm6]	AC	A	1.199e^-4	0.592	UPSTREAM CR45457 & 1 other DOWNSTREAM CR45456 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20119916	2L_20119916_SNP [dm3] 2L_20119916_SNP [dm6]	G	T	1.200e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	9686246	2L_9686246_SNP [dm3] 2L_9686246_SNP [dm6]	A	G	1.201e^-4	0.592	INTRON Pka-C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26867697	3R_26867697_SNP [dm3] 3R_31041975_SNP [dm6]	C	T	1.205e^-4	0.592	SYNONYMOUS_CODING CanA1
X	22107583	X_22107583_SNP [dm3] X_22705747_SNP [dm6]	G	C	1.206e^-4	0.592	INTRON CR44997
2L	20620409	2L_20620409_SNP [dm3] 2L_20620409_SNP [dm6]	A	T	1.207e^-4	0.592	INTRON CR44909
X	10273583	X_10273583_SNP [dm3] X_10379550_SNP [dm6]	A	G	1.211e^-4	0.592	SYNONYMOUS_CODING CG32681 INTRON CG17841
3L	12183326	3L_12183326_SNP [dm3] 3L_12190226_SNP [dm6]	T	C	1.212e^-4	0.592	SYNONYMOUS_CODING Est-6 UPSTREAM Est-P
3L	12183332	3L_12183332_SNP [dm3] 3L_12190232_SNP [dm6]	C	T	1.212e^-4	0.592	SYNONYMOUS_CODING Est-6 UPSTREAM Est-P
3R	2597314	3R_2597314_DEL [dm3] 3R_6771592_DEL [dm6]	AA	A	1.222e^-4	0.595	INTRON CR42721
2R	13390583	2R_13390583_SNP [dm3] 2R_17503078_SNP [dm6]	A	G	1.228e^-4	0.595	INTRON CG43164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10175154	2R_10175154_SNP [dm3] 2R_14287649_SNP [dm6]	A	T	1.233e^-4	0.595	UPSTREAM Ih INTRON Ih
2L	2685245	2L_2685245_SNP [dm3] 2L_2685245_SNP [dm6]	T	C	1.233e^-4	0.595	INTRON CG31690
X	3359606	X_3359606_SNP [dm3] X_3465573_SNP [dm6]	T	A	1.238e^-4	0.595	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
3R	15094918	3R_15094918_SNP [dm3] 3R_19269196_SNP [dm6]	C	G	1.238e^-4	0.595	INTERGENIC
2L	7443993	2L_7443993_SNP [dm3] 2L_7443993_SNP [dm6]	A	G	1.243e^-4	0.595	SPLICE_SITE_REGION CG5973 INTRON CG5973
2R	10797253	2R_10797253_INS [dm3] 2R_14909748_INS [dm6]	T	TT	1.254e^-4	0.595	INTRON CG10249
3R	10305372	3R_10305372_SNP [dm3] 3R_14479650_SNP [dm6]	T	A	1.256e^-4	0.595	INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	12617332	2L_12617332_SNP [dm3] 2L_12617332_SNP [dm6]	A	G	1.259e^-4	0.595	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17054282	2L_17054282_SNP [dm3] 2L_17054282_SNP [dm6]	A	T	1.259e^-4	0.595	INTERGENIC
3R	10835716	3R_10835716_SNP [dm3] 3R_15009994_SNP [dm6]	C	T	1.259e^-4	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14992231	3L_14992231_SNP [dm3] 3L_14999131_SNP [dm6]	G	A	1.265e^-4	0.595	SYNONYMOUS_CODING mRpL39 UPSTREAM Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20474889	2L_20474889_SNP [dm3] 2L_20474889_SNP [dm6]	C	T	1.272e^-4	0.595	INTRON CR44980
2R	10376657	2R_10376657_SNP [dm3] 2R_14489152_SNP [dm6]	C	T	1.281e^-4	0.595	INTRON L
2R	15292708	2R_15292708_SNP [dm3] 2R_19405203_SNP [dm6]	G	A	1.283e^-4	0.595	SYNONYMOUS_CODING hts INTRON hts
2R	10381449	2R_10381449_SNP [dm3] 2R_14493944_SNP [dm6]	C	A	1.286e^-4	0.595	INTRON L	TF binding site mE1_TFBS_cad
2L	13087476	2L_13087476_SNP [dm3] 2L_13087476_SNP [dm6]	A	G	1.298e^-4	0.595	INTERGENIC
2L	2556881	2L_2556881_SNP [dm3] 2L_2556881_SNP [dm6]	T	A	1.299e^-4	0.595	DOWNSTREAM CR44113 INTERGENIC
2L	18536512	2L_18536512_SNP [dm3] 2L_18536512_SNP [dm6]	T	A	1.301e^-4	0.595	INTRON Pde11	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12617293	2L_12617293_SNP [dm3] 2L_12617293_SNP [dm6]	G	T	1.307e^-4	0.595	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3430790	3L_3430790_SNP [dm3] 3L_3430790_SNP [dm6]	C	G	1.308e^-4	0.595	INTRON eIF5B
X	10822821	X_10822821_SNP [dm3] X_10928788_SNP [dm6]	C	T	1.308e^-4	0.595	INTRON CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	10822824	X_10822824_SNP [dm3] X_10928791_SNP [dm6]	A	T	1.308e^-4	0.595	INTRON CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	8175704	2R_8175704_SNP [dm3] 2R_12288199_SNP [dm6]	G	A	1.308e^-4	0.595	INTRON CG42700
2L	13154467	2L_13154467_SNP [dm3] 2L_13154467_SNP [dm6]	G	A	1.308e^-4	0.595	INTERGENIC
3L	3861001	3L_3861001_SNP [dm3] 3L_3861001_SNP [dm6]	C	A	1.308e^-4	0.595	UTR_3_PRIME Awh
2R	17181047	2R_17181047_SNP [dm3] 2R_21293542_SNP [dm6]	A	C	1.309e^-4	0.595	UTR_5_PRIME Sgf29 UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2466524	3L_2466524_DEL [dm3] 3L_2466524_DEL [dm6]	CTTT	C	1.310e^-4	0.595	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10585511	2R_10585511_SNP [dm3] 2R_14698006_SNP [dm6]	T	A	1.313e^-4	0.595	INTRON mspo
2L	6690965	2L_6690965_SNP [dm3] 2L_6690965_SNP [dm6]	A	G	1.317e^-4	0.595	INTRON Tsp	TF binding site mE1_TFBS_cad
3L	9347965	3L_9347965_SNP [dm3] 3L_9354865_SNP [dm6]	C	T	1.322e^-4	0.596	SYNONYMOUS_CODING CG32040 INTRON UGP
2L	10887294	2L_10887294_SNP [dm3] 2L_10887294_SNP [dm6]	T	C	1.336e^-4	0.601	DOWNSTREAM CG14071 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10251106	2R_10251106_SNP [dm3] 2R_14363601_SNP [dm6]	G	A	1.346e^-4	0.603	SYNONYMOUS_CODING Tfb1 DOWNSTREAM Arc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18487330	2R_18487330_SNP [dm3] 2R_22599825_SNP [dm6]	A	G	1.348e^-4	0.603	DOWNSTREAM CG4294 INTRON CG4269	TF binding site mE1_TFBS_sens
2R	3823411	2R_3823411_SNP [dm3] 2R_7935906_SNP [dm6]	C	T	1.353e^-4	0.604	SYNONYMOUS_CODING drosha DOWNSTREAM CG8728	TF binding site mE1_TFBS_sens
2R	10549497	2R_10549497_SNP [dm3] 2R_14661992_SNP [dm6]	T	G	1.355e^-4	0.604	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9567401	X_9567401_SNP [dm3] X_9673368_SNP [dm6]	T	G	1.365e^-4	0.605	SYNONYMOUS_CODING nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15725872	2R_15725872_INS [dm3] 2R_19838367_INS [dm6]	A	ATA	1.379e^-4	0.605	INTERGENIC	TF binding site mE1_TFBS_cad
X	14681383	X_14681383_SNP [dm3] X_14787350_SNP [dm6]	T	C	1.380e^-4	0.605	UPSTREAM Ag5r DOWNSTREAM rut EXON CR45522
2R	6486857	2R_6486857_SNP [dm3] 2R_10599352_SNP [dm6]	T	A	1.391e^-4	0.605	INTRON psq
X	10019458	X_10019458_INS [dm3] X_10125425_INS [dm6]	A	AA	1.395e^-4	0.605	DOWNSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
2L	20878713	2L_20878713_SNP [dm3] 2L_20878713_SNP [dm6]	T	C	1.397e^-4	0.605	INTRON sky & 1 other	TF binding site mE1_TFBS_cnc
3L	15762502	3L_15762502_SNP [dm3] 3L_15769402_SNP [dm6]	G	T	1.403e^-4	0.605	INTERGENIC
3L	21585637	3L_21585637_SNP [dm3] 3L_21592537_SNP [dm6]	C	T	1.412e^-4	0.605	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18329099	X_18329099_SNP [dm3] X_18435066_SNP [dm6]	A	G	1.413e^-4	0.605	DOWNSTREAM CG32548 INTERGENIC
2R	13044624	2R_13044624_DEL [dm3] 2R_17157119_DEL [dm6]	CAATAACAGTGCATCGTAAT...	C	1.416e^-4	0.605	UTR_3_PRIME CG17290 & 1 other DOWNSTREAM CG17290 INTRAGENIC CG17290
3L	6356992	3L_6356992_SNP [dm3] 3L_6363892_SNP [dm6]	T	G	1.426e^-4	0.605	INTERGENIC
3L	6356995	3L_6356995_INS [dm3] 3L_6363895_INS [dm6]	C	CCACTGC	1.426e^-4	0.605	INTERGENIC
2L	4374814	2L_4374814_SNP [dm3] 2L_4374814_SNP [dm6]	C	T	1.429e^-4	0.605	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7090939	2L_7090939_SNP [dm3] 2L_7090939_SNP [dm6]	A	G	1.430e^-4	0.605	INTERGENIC
2L	10635015	2L_10635015_SNP [dm3] 2L_10635015_SNP [dm6]	T	C	1.436e^-4	0.605	INTRON CG7329
2L	17804869	2L_17804869_SNP [dm3] 2L_17804869_SNP [dm6]	C	T	1.447e^-4	0.605	INTRON CadN2
3R	23139380	3R_23139380_SNP [dm3] 3R_27313658_SNP [dm6]	T	A	1.449e^-4	0.605	INTRON CG3339	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15321103	2R_15321103_SNP [dm3] 2R_19433598_SNP [dm6]	G	A	1.459e^-4	0.605	SYNONYMOUS_CODING Fak	TF binding site mE1_TFBS_inv
2R	14901087	2R_14901087_SNP [dm3] 2R_19013582_SNP [dm6]	C	A	1.464e^-4	0.605	INTERGENIC
X	16159938	X_16159938_SNP [dm3] X_16265905_SNP [dm6]	T	C	1.469e^-4	0.605	INTRON CG12507
2L	20632859	2L_20632859_SNP [dm3] 2L_20632859_SNP [dm6]	G	T	1.472e^-4	0.605	INTERGENIC
X	7749135	X_7749135_SNP [dm3] X_7855102_SNP [dm6]	A	G	1.472e^-4	0.605	UPSTREAM CG10920 INTERGENIC
2L	2559284	2L_2559284_SNP [dm3] 2L_2559284_SNP [dm6]	C	A	1.476e^-4	0.605	INTERGENIC
3L	11228593	3L_11228593_SNP [dm3] 3L_11235493_SNP [dm6]	A	G	1.491e^-4	0.605	NON_SYNONYMOUS_CODING Ir68a
3L	4087631	3L_4087631_SNP [dm3] 3L_4087631_SNP [dm6]	G	A	1.494e^-4	0.605	UTR_5_PRIME CG14989 INTRON Gad1
2L	19978656	2L_19978656_SNP [dm3] 2L_19978656_SNP [dm6]	T	C	1.496e^-4	0.605	UPSTREAM CR43620 INTRON CG43861
2L	14429579	2L_14429579_SNP [dm3] 2L_14429579_SNP [dm6]	T	G	1.500e^-4	0.605	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	16803609	3R_16803609_SNP [dm3] 3R_20977887_SNP [dm6]	C	T	1.509e^-4	0.605	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17770758	2R_17770758_SNP [dm3] 2R_21883253_SNP [dm6]	T	A	1.511e^-4	0.605	UPSTREAM Fili & 1 other INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	8359738	2L_8359738_SNP [dm3] 2L_8359738_SNP [dm6]	C	T	1.513e^-4	0.605	NON_SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9311789	2L_9311789_SNP [dm3] 2L_9311789_SNP [dm6]	G	A	1.514e^-4	0.605	INTERGENIC
X	21831904	X_21831904_SNP [dm3] X_22430069_SNP [dm6]	A	T	1.520e^-4	0.605	INTERGENIC	transposable element FlyBase
2L	8649844	2L_8649844_SNP [dm3] 2L_8649844_SNP [dm6]	T	G	1.523e^-4	0.605	INTRON Sema-1a
2L	20546987	2L_20546987_SNP [dm3] 2L_20546987_SNP [dm6]	A	G	1.523e^-4	0.605	INTERGENIC
X	22106275	X_22106275_SNP [dm3] X_22704439_SNP [dm6]	C	T	1.523e^-4	0.605	INTRON CR44997	transposable element FlyBase
X	22105871	X_22105871_SNP [dm3] X_22704035_SNP [dm6]	C	A	1.524e^-4	0.605	INTRON CR44997	transposable element FlyBase
2L	8390166	2L_8390166_SNP [dm3] 2L_8390166_SNP [dm6]	A	G	1.526e^-4	0.605	SYNONYMOUS_CODING CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4106255	2R_4106255_SNP [dm3] 2R_8218750_SNP [dm6]	T	A	1.527e^-4	0.605	INTRON LRP1
2R	13094471	2R_13094471_SNP [dm3] 2R_17206966_SNP [dm6]	G	T	1.528e^-4	0.605	INTERGENIC
X	3359598	X_3359598_DEL [dm3] X_3465565_DEL [dm6]	GTATT	G	1.529e^-4	0.605	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
2L	20637984	2L_20637984_SNP [dm3] 2L_20637984_SNP [dm6]	G	T	1.530e^-4	0.605	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	9086490	2L_9086490_SNP [dm3] 2L_9086490_SNP [dm6]	C	A	1.536e^-4	0.605	SYNONYMOUS_CODING Toll-4
3R	15037637	3R_15037637_SNP [dm3] 3R_19211915_SNP [dm6]	T	A	1.545e^-4	0.605	UPSTREAM cry INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7878031	2L_7878031_SNP [dm3] 2L_7878031_SNP [dm6]	C	T	1.551e^-4	0.605	INTRON spz3
2L	9059874	2L_9059874_SNP [dm3] 2L_9059874_SNP [dm6]	A	G	1.559e^-4	0.605	INTRON CG31708
2L	1611239	2L_1611239_DEL [dm3] 2L_1611239_DEL [dm6]	TTAAAAATAACTTAAGGACC...	T	1.561e^-4	0.605	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9079266	2L_9079266_SNP [dm3] 2L_9079266_SNP [dm6]	T	C	1.564e^-4	0.605	INTERGENIC
X	19186444	X_19186444_SNP [dm3] X_19292411_SNP [dm6]	C	T	1.569e^-4	0.605	INTRON CG8034
2L	9303748	2L_9303748_INS [dm3] 2L_9303748_INS [dm6]	G	GTCGTGGCAATG...	1.581e^-4	0.605	DOWNSTREAM CR42844 INTERGENIC
X	20485827	X_20485827_SNP [dm3] X_20614800_SNP [dm6]	G	A	1.583e^-4	0.605	INTRON RunxA
2L	9088829	2L_9088829_SNP [dm3] 2L_9088829_SNP [dm6]	C	T	1.584e^-4	0.605	NON_SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19587734	X_19587734_SNP [dm3] X_19693701_SNP [dm6]	T	C	1.585e^-4	0.605	UPSTREAM Mer DOWNSTREAM CG14229 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	11438890	2R_11438890_SNP [dm3] 2R_15551385_SNP [dm6]	G	A	1.585e^-4	0.605	INTERGENIC
X	22107686	X_22107686_SNP [dm3] X_22705850_SNP [dm6]	T	G	1.585e^-4	0.605	INTRON CR44997
3L	2466912	3L_2466912_SNP [dm3] 3L_2466912_SNP [dm6]	C	T	1.586e^-4	0.605	UTR_5_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
X	22106189	X_22106189_SNP [dm3] X_22704353_SNP [dm6]	C	G	1.587e^-4	0.605	INTRON CR44997	transposable element FlyBase
2R	15863357	2R_15863357_SNP [dm3] 2R_19975852_SNP [dm6]	G	A	1.589e^-4	0.605	INTERGENIC
3L	13871349	3L_13871349_SNP [dm3] 3L_13878249_SNP [dm6]	T	C	1.590e^-4	0.605	UPSTREAM CG13737 INTRON dysc
2R	4108435	2R_4108435_SNP [dm3] 2R_8220930_SNP [dm6]	G	C	1.594e^-4	0.605	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8219437	2L_8219437_SNP [dm3] 2L_8219437_SNP [dm6]	C	T	1.597e^-4	0.605	SYNONYMOUS_CODING Snx6
X	15500719	X_15500719_SNP [dm3] X_15606686_SNP [dm6]	C	T	1.601e^-4	0.605	SYNONYMOUS_CODING sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10674472	2R_10674472_SNP [dm3] 2R_14786967_SNP [dm6]	A	G	1.603e^-4	0.605	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	10675354	2R_10675354_SNP [dm3] 2R_14787849_SNP [dm6]	C	A	1.603e^-4	0.605	INTRON kn	TF binding site BDTNP1_TFBS_da
3R	27375041	3R_27375041_SNP [dm3] 3R_31549319_SNP [dm6]	T	A	1.605e^-4	0.605	UTR_5_PRIME nyo	TF binding site mE1_TFBS_inv
2L	4141523	2L_4141523_SNP [dm3] 2L_4141523_SNP [dm6]	A	G	1.606e^-4	0.605	INTERGENIC
2L	20886645	2L_20886645_SNP [dm3] 2L_20886645_SNP [dm6]	T	A	1.608e^-4	0.605	UPSTREAM sky INTRON sky & 1 other	TF binding site mE1_TFBS_Trl
3L	18244873	3L_18244873_DEL [dm3] 3L_18251773_DEL [dm6]	ATA	G	1.611e^-4	0.605	UPSTREAM CheA75a INTERGENIC
3L	4298056	3L_4298056_SNP [dm3] 3L_4298056_SNP [dm6]	G	T	1.615e^-4	0.605	INTRON dyl
X	9288630	X_9288630_SNP [dm3] X_9394597_SNP [dm6]	C	T	1.617e^-4	0.605	INTRON mgl
2L	20626557	2L_20626557_SNP [dm3] 2L_20626557_SNP [dm6]	A	T	1.618e^-4	0.605	UPSTREAM CR44909 INTERGENIC
2L	9086695	2L_9086695_SNP [dm3] 2L_9086695_SNP [dm6]	G	A	1.621e^-4	0.605	NON_SYNONYMOUS_CODING Toll-4
2L	20043551	2L_20043551_SNP [dm3] 2L_20043551_SNP [dm6]	G	T	1.622e^-4	0.605	INTRON sNPF
2R	12701190	2R_12701190_SNP [dm3] 2R_16813685_SNP [dm6]	A	C	1.625e^-4	0.605	DOWNSTREAM CR44379 & 1 other INTERGENIC
2R	5444770	2R_5444770_SNP [dm3] 2R_9557265_SNP [dm6]	G	T	1.626e^-4	0.605	INTERGENIC
2L	7044476	2L_7044476_SNP [dm3] 2L_7044476_SNP [dm6]	T	C	1.626e^-4	0.605	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1411659	2R_1411659_INS [dm3] 2R_5524154_INS [dm6]	T	TT	1.627e^-4	0.605	UPSTREAM CG30438 INTRON CG30438
2L	19272668	2L_19272668_SNP [dm3] 2L_19272668_SNP [dm6]	C	A	1.629e^-4	0.605	INTRON CR44190
2R	10616116	2R_10616116_SNP [dm3] 2R_14728611_SNP [dm6]	G	A	1.629e^-4	0.605	INTERGENIC
2R	15857933	2R_15857933_SNP [dm3] 2R_19970428_SNP [dm6]	A	G	1.646e^-4	0.605	INTERGENIC
2L	19272684	2L_19272684_SNP [dm3] 2L_19272684_SNP [dm6]	G	C	1.649e^-4	0.605	INTRON CR44190
2R	12373990	2R_12373990_SNP [dm3] 2R_16486485_SNP [dm6]	C	T	1.652e^-4	0.605	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14160219	2R_14160219_SNP [dm3] 2R_18272714_SNP [dm6]	A	T	1.657e^-4	0.605	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16285790	2R_16285790_SNP [dm3] 2R_20398285_SNP [dm6]	C	A	1.658e^-4	0.605	INTERGENIC
2L	19331009	2L_19331009_SNP [dm3] 2L_19331009_SNP [dm6]	T	C	1.660e^-4	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20678165	2L_20678165_SNP [dm3] 2L_20678165_SNP [dm6]	G	A	1.663e^-4	0.605	DOWNSTREAM Cen INTRON ik2
2L	20685007	2L_20685007_SNP [dm3] 2L_20685007_SNP [dm6]	G	A	1.663e^-4	0.605	UTR_3_PRIME Hr38
2R	10289137	2R_10289137_SNP [dm3] 2R_14401632_SNP [dm6]	A	C	1.663e^-4	0.605	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13827057	3L_13827057_SNP [dm3] 3L_13833957_SNP [dm6]	A	G	1.666e^-4	0.605	INTERGENIC
3R	12948734	3R_12948734_SNP [dm3] 3R_17123012_SNP [dm6]	G	T	1.667e^-4	0.605	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
3R	22369729	3R_22369729_SNP [dm3] 3R_26544007_SNP [dm6]	T	G	1.674e^-4	0.605	INTRON scrib	TF binding site mE1_TFBS_HSA
2R	17819196	2R_17819196_SNP [dm3] 2R_21931691_SNP [dm6]	T	A	1.674e^-4	0.605	INTRON Fili
2R	10549501	2R_10549501_SNP [dm3] 2R_14661996_SNP [dm6]	T	G	1.674e^-4	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2553963	2L_2553963_SNP [dm3] 2L_2553963_SNP [dm6]	C	T	1.676e^-4	0.605	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2482021	3L_2482021_SNP [dm3] 3L_2482021_SNP [dm6]	A	G	1.679e^-4	0.605	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20380146	3R_20380146_SNP [dm3] 3R_24554424_SNP [dm6]	G	T	1.681e^-4	0.605	UPSTREAM tRNA:D:96A INTRON Esyt2	TF binding site BDTNP1_TFBS_dl
2R	12060270	2R_12060270_SNP [dm3] 2R_16172765_SNP [dm6]	G	A	1.681e^-4	0.605	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	6064333	2R_6064333_SNP [dm3] 2R_10176828_SNP [dm6]	G	A	1.683e^-4	0.605	INTRON KCNQ
2L	7900583	2L_7900583_DEL [dm3] 2L_7900583_DEL [dm6]	CG	C	1.687e^-4	0.605	INTRON Snoo
X	21831713	X_21831713_SNP [dm3] X_22429878_SNP [dm6]	T	C	1.687e^-4	0.605	INTERGENIC	transposable element FlyBase
X	3359597	X_3359597_SNP [dm3] X_3465564_SNP [dm6]	G	T	1.689e^-4	0.605	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
2L	7878970	2L_7878970_SNP [dm3] 2L_7878970_SNP [dm6]	G	A	1.691e^-4	0.605	SYNONYMOUS_CODING spz3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20676319	2L_20676319_SNP [dm3] 2L_20676319_SNP [dm6]	C	T	1.691e^-4	0.605	SYNONYMOUS_CODING ik2 UPSTREAM CG31678	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9079827	2L_9079827_SNP [dm3] 2L_9079827_SNP [dm6]	A	G	1.693e^-4	0.605	INTERGENIC
2L	7043920	2L_7043920_SNP [dm3] 2L_7043920_SNP [dm6]	C	G	1.693e^-4	0.605	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	18079224	3L_18079224_SNP [dm3] 3L_18086124_SNP [dm6]	T	G	1.704e^-4	0.605	UPSTREAM CR43253 DOWNSTREAM CG34253 EXON CR32194
2L	8390177	2L_8390177_SNP [dm3] 2L_8390177_SNP [dm6]	T	G	1.708e^-4	0.605	SYNONYMOUS_CODING CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13601306	2R_13601306_SNP [dm3] 2R_17713801_SNP [dm6]	A	C	1.710e^-4	0.605	INTRON CG6424
3L	8518279	3L_8518279_SNP [dm3] 3L_8525179_SNP [dm6]	G	A	1.716e^-4	0.605	UPSTREAM foi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20530596	2L_20530596_SNP [dm3] 2L_20530596_SNP [dm6]	A	T	1.718e^-4	0.605	UPSTREAM CG44270 INTERGENIC
2L	7878041	2L_7878041_SNP [dm3] 2L_7878041_SNP [dm6]	G	C	1.722e^-4	0.605	INTRON spz3
2L	9261424	2L_9261424_SNP [dm3] 2L_9261424_SNP [dm6]	G	A	1.725e^-4	0.605	DOWNSTREAM CR45262 INTRON Ggamma30A
X	19587557	X_19587557_SNP [dm3] X_19693524_SNP [dm6]	C	A	1.730e^-4	0.605	UPSTREAM Mer DOWNSTREAM CG14229 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	18067911	2R_18067911_SNP [dm3] 2R_22180406_SNP [dm6]	G	A	1.743e^-4	0.605	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	20591104	2L_20591104_SNP [dm3] 2L_20591104_SNP [dm6]	G	T	1.743e^-4	0.605	INTRON CR44909
2L	2559566	2L_2559566_SNP [dm3] 2L_2559566_SNP [dm6]	A	T	1.743e^-4	0.605	INTERGENIC
2L	3261228	2L_3261228_SNP [dm3] 2L_3261228_SNP [dm6]	C	T	1.745e^-4	0.605	DOWNSTREAM CR45338 EXON CR45337
2L	19338890	2L_19338890_SNP [dm3] 2L_19338890_SNP [dm6]	G	A	1.751e^-4	0.605	UTR_3_PRIME dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	6782431	2R_6782431_SNP [dm3] 2R_10894926_SNP [dm6]	G	A	1.751e^-4	0.605	SYNONYMOUS_CODING CG12942 UPSTREAM cag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9861283	X_9861283_SNP [dm3] X_9967250_SNP [dm6]	C	G	1.754e^-4	0.605	DOWNSTREAM CG43386 & 1 other INTRON CG43386
3L	2505917	3L_2505917_SNP [dm3] 3L_2505917_SNP [dm6]	T	A	1.756e^-4	0.605	UTR_3_PRIME Spn DOWNSTREAM Spn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11347747	2R_11347747_SNP [dm3] 2R_15460242_SNP [dm6]	G	C	1.761e^-4	0.605	INTRON CG43729
2L	20622069	2L_20622069_SNP [dm3] 2L_20622069_SNP [dm6]	C	A	1.761e^-4	0.605	INTRON CR44909
2R	12245315	2R_12245315_SNP [dm3] 2R_16357810_SNP [dm6]	G	A	1.761e^-4	0.605	DOWNSTREAM CR45322 EXON CR43416
2L	1614223	2L_1614223_INS [dm3] 2L_1614223_INS [dm6]	G	GCTAATACCTCAT...	1.763e^-4	0.605	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3R	17039603	3R_17039603_SNP [dm3] 3R_21213881_SNP [dm6]	G	A	1.772e^-4	0.605	UTR_3_PRIME SNF4Agamma	TF binding site BDTNP1_TFBS_dl
3L	8865745	3L_8865745_SNP [dm3] 3L_8872645_SNP [dm6]	A	G	1.772e^-4	0.605	INTRON dally	TF binding site BDTNP1_TFBS_twi
2L	1112779	2L_1112779_DEL [dm3] 2L_1112779_DEL [dm6]	TT	T	1.773e^-4	0.605	UPSTREAM CG14340 DOWNSTREAM CG14339 INTERGENIC
X	9858074	X_9858074_SNP [dm3] X_9964041_SNP [dm6]	A	G	1.776e^-4	0.605	SYNONYMOUS_CODING CG1791
2L	17923262	2L_17923262_SNP [dm3] 2L_17923262_SNP [dm6]	G	C	1.776e^-4	0.605	INTERGENIC
2L	20886623	2L_20886623_SNP [dm3] 2L_20886623_SNP [dm6]	A	T	1.779e^-4	0.605	UPSTREAM sky INTRON sky & 1 other	TF binding site mE1_TFBS_Trl
2R	5184571	2R_5184571_SNP [dm3] 2R_9297066_SNP [dm6]	T	C	1.780e^-4	0.605	INTRON Drep-2
2R	13744176	2R_13744176_DEL [dm3] 2R_17856671_DEL [dm6]	AG	C	1.785e^-4	0.605	UTR_5_PRIME olf186-F INTRON olf186-F
X	9063481	X_9063481_SNP [dm3] X_9169448_SNP [dm6]	T	C	1.794e^-4	0.606	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10265199	2R_10265199_SNP [dm3] 2R_14377694_SNP [dm6]	A	C	1.796e^-4	0.606	UPSTREAM Dh44-R1 INTERGENIC
2L	11479901	2L_11479901_SNP [dm3] 2L_11479901_SNP [dm6]	A	G	1.799e^-4	0.606	INTERGENIC
2L	9086698	2L_9086698_SNP [dm3] 2L_9086698_SNP [dm6]	A	G	1.803e^-4	0.606	NON_SYNONYMOUS_CODING Toll-4
3L	15658329	3L_15658329_SNP [dm3] 3L_15665229_SNP [dm6]	T	C	1.803e^-4	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15221460	2R_15221460_SNP [dm3] 2R_19333955_SNP [dm6]	C	G	1.816e^-4	0.606	INTRON Rgk1 & 1 other
2R	9042368	2R_9042368_SNP [dm3] 2R_13154863_SNP [dm6]	G	A	1.823e^-4	0.606	SPLICE_SITE_REGION TppII INTRON TppII
2R	10508086	2R_10508086_SNP [dm3] 2R_14620581_SNP [dm6]	T	A	1.824e^-4	0.606	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	22107333	X_22107333_SNP [dm3] X_22705497_SNP [dm6]	G	A	1.824e^-4	0.606	INTRON CR44997	transposable element FlyBase
X	3218673	X_3218673_SNP [dm3] X_3324640_SNP [dm6]	C	T	1.828e^-4	0.606	INTRON CR44886 & 1 other	TF binding site mE1_TFBS_sbb
3L	18151646	3L_18151646_SNP [dm3] 3L_18158546_SNP [dm6]	T	C	1.831e^-4	0.606	NON_SYNONYMOUS_CODING CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15758383	2L_15758383_SNP [dm3] 2L_15758383_SNP [dm6]	T	C	1.831e^-4	0.606	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1614211	2L_1614211_SNP [dm3] 2L_1614211_SNP [dm6]	G	T	1.832e^-4	0.606	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
X	9063484	X_9063484_SNP [dm3] X_9169451_SNP [dm6]	A	C	1.833e^-4	0.606	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11787460	3L_11787460_SNP [dm3] 3L_11794360_SNP [dm6]	C	T	1.838e^-4	0.606	SYNONYMOUS_CODING CG10907	TF binding site mE1_TFBS_sens
2L	965054	2L_965054_SNP [dm3] 2L_965054_SNP [dm6]	C	T	1.842e^-4	0.606	INTERGENIC
3L	15658307	3L_15658307_SNP [dm3] 3L_15665207_SNP [dm6]	T	A	1.842e^-4	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	3359614	X_3359614_SNP [dm3] X_3465581_SNP [dm6]	A	T	1.849e^-4	0.606	DOWNSTREAM CG12206 INTRON CR44999	transposable element FlyBase
3L	12406216	3L_12406216_SNP [dm3] 3L_12413116_SNP [dm6]	T	C	1.849e^-4	0.606	INTRON CG32103
X	22107574	X_22107574_SNP [dm3] X_22705738_SNP [dm6]	A	T	1.853e^-4	0.606	INTRON CR44997	transposable element FlyBase
3L	20085091	3L_20085091_SNP [dm3] 3L_20091991_SNP [dm6]	A	G	1.857e^-4	0.606	INTERGENIC
3L	4087632	3L_4087632_SNP [dm3] 3L_4087632_SNP [dm6]	A	G	1.859e^-4	0.606	UTR_5_PRIME CG14989 INTRON Gad1
2L	10416904	2L_10416904_DEL [dm3] 2L_10416904_DEL [dm6]	GCATAT	G	1.860e^-4	0.606	INTRON Klp31E	TF binding site BDTNP1_TFBS_twi
X	21867241	X_21867241_SNP [dm3] X_22465405_SNP [dm6]	T	C	1.866e^-4	0.607	SYNONYMOUS_CODING CG14619 INTRON CG14619
3L	15658306	3L_15658306_SNP [dm3] 3L_15665206_SNP [dm6]	G	A	1.876e^-4	0.608	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	8673614	2R_8673614_SNP [dm3] 2R_12786109_SNP [dm6]	G	A	1.878e^-4	0.608	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22107019	X_22107019_SNP [dm3] X_22705183_SNP [dm6]	T	C	1.884e^-4	0.609	INTRON CR44997	transposable element FlyBase
2L	4141333	2L_4141333_SNP [dm3] 2L_4141333_SNP [dm6]	T	C	1.891e^-4	0.609	INTERGENIC
X	9444136	X_9444136_SNP [dm3] X_9550103_SNP [dm6]	A	C	1.892e^-4	0.609	INTRON CG32700
2L	1954834	2L_1954834_SNP [dm3] 2L_1954834_SNP [dm6]	T	G	1.893e^-4	0.609	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9696781	3L_9696781_SNP [dm3] 3L_9703681_SNP [dm6]	A	T	1.902e^-4	0.61	UPSTREAM CG16711 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5864684	X_5864684_SNP [dm3] X_5970651_SNP [dm6]	A	C	1.904e^-4	0.61	INTRON Grip
X	7265187	X_7265187_SNP [dm3] X_7371154_SNP [dm6]	C	T	1.913e^-4	0.61	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20002645	2L_20002645_SNP [dm3] 2L_20002645_SNP [dm6]	G	A	1.918e^-4	0.61	INTRON CG43861
X	12532319	X_12532319_SNP [dm3] X_12638286_SNP [dm6]	A	C	1.919e^-4	0.61	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
X	12532285	X_12532285_SNP [dm3] X_12638252_SNP [dm6]	T	A	1.921e^-4	0.61	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
2L	8766805	2L_8766805_MNP [dm3] 2L_8766805_MNP [dm6]	ACT	GTA	1.921e^-4	0.61	NON_SYNONYMOUS_CODING CG9463
3R	26864412	3R_26864412_SNP [dm3] 3R_31038690_SNP [dm6]	A	C	1.924e^-4	0.61	UPSTREAM CanA1 INTERGENIC
X	15499373	X_15499373_SNP [dm3] X_15605340_SNP [dm6]	T	C	1.924e^-4	0.61	SYNONYMOUS_CODING sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5141172	3R_5141172_INS [dm3] 3R_9315450_INS [dm6]	T	TAAGTATA	1.929e^-4	0.61	INTRON CG8861
X	11527121	X_11527121_SNP [dm3] X_11633088_SNP [dm6]	C	T	1.943e^-4	0.612	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4555202	3L_4555202_SNP [dm3] 3L_4555202_SNP [dm6]	A	T	1.945e^-4	0.612	NON_SYNONYMOUS_CODING CG33777 UPSTREAM CG42540	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
2L	11550633	2L_11550633_SNP [dm3] 2L_11550633_SNP [dm6]	C	T	1.951e^-4	0.612	UPSTREAM CR44494 INTERGENIC
2L	12617260	2L_12617260_SNP [dm3] 2L_12617260_SNP [dm6]	G	A	1.951e^-4	0.612	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10453850	2R_10453850_SNP [dm3] 2R_14566345_SNP [dm6]	T	C	1.954e^-4	0.612	INTRON ttv
2L	7877700	2L_7877700_INS [dm3] 2L_7877700_INS [dm6]	T	AA	1.956e^-4	0.612	INTRON spz3
3L	2466576	3L_2466576_SNP [dm3] 3L_2466576_SNP [dm6]	C	T	1.962e^-4	0.612	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	12059708	X_12059708_SNP [dm3] X_12165675_SNP [dm6]	A	G	1.965e^-4	0.612	INTRON Ten-a
2L	9059448	2L_9059448_SNP [dm3] 2L_9059448_SNP [dm6]	T	G	1.966e^-4	0.612	INTRON CG31708
X	10272513	X_10272513_SNP [dm3] X_10378480_SNP [dm6]	T	C	1.968e^-4	0.612	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
2L	17294542	2L_17294542_SNP [dm3] 2L_17294542_SNP [dm6]	A	T	1.977e^-4	0.614	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10305293	3R_10305293_SNP [dm3] 3R_14479571_SNP [dm6]	G	A	1.979e^-4	0.614	INTRON cv-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	8909639	3L_8909639_SNP [dm3] 3L_8916539_SNP [dm6]	G	C	1.986e^-4	0.615	DOWNSTREAM CR43970 INTRON Tsp66E
3L	4555206	3L_4555206_SNP [dm3] 3L_4555206_SNP [dm6]	G	A	1.994e^-4	0.616	NON_SYNONYMOUS_CODING CG33777 UPSTREAM CG42540	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
2L	11550657	2L_11550657_SNP [dm3] 2L_11550657_SNP [dm6]	T	A	2.000e^-4	0.617	UPSTREAM CR44494 INTERGENIC
2L	20605299	2L_20605299_SNP [dm3] 2L_20605299_SNP [dm6]	T	C	2.005e^-4	0.617	INTRON CR44909
3L	4338456	3L_4338456_INS [dm3] 3L_4338456_INS [dm6]	A	AGA	2.007e^-4	0.617	INTRON Cip4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11568960	2L_11568960_SNP [dm3] 2L_11568960_SNP [dm6]	A	G	2.010e^-4	0.617	INTERGENIC
3R	13438145	3R_13438145_SNP [dm3] 3R_17612423_SNP [dm6]	G	T	2.019e^-4	0.617	UPSTREAM Edg91 & 1 other INTERGENIC
3R	26335440	3R_26335440_SNP [dm3] 3R_30509718_SNP [dm6]	T	A	2.024e^-4	0.617	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG34041 & 1 other
X	7440242	X_7440242_SNP [dm3] X_7546209_SNP [dm6]	A	G	2.024e^-4	0.617	INTRON CG32719
X	5106428	X_5106428_SNP [dm3] X_5212395_SNP [dm6]	A	C	2.025e^-4	0.617	INTRON CG15465 & 1 other
X	16159947	X_16159947_SNP [dm3] X_16265914_SNP [dm6]	C	T	2.037e^-4	0.617	INTRON CG12507
3L	12420872	3L_12420872_SNP [dm3] 3L_12427772_SNP [dm6]	G	A	2.037e^-4	0.617	SYNONYMOUS_CODING toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	1612106	2L_1612106_SNP [dm3] 2L_1612106_SNP [dm6]	A	G	2.039e^-4	0.617	SYNONYMOUS_CODING CG14352 UPSTREAM CG31935 DOWNSTREAM RFeSP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4843706	2L_4843706_SNP [dm3] 2L_4843706_SNP [dm6]	T	C	2.044e^-4	0.617	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	12062962	3L_12062962_SNP [dm3] 3L_12069862_SNP [dm6]	T	G	2.048e^-4	0.617	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
2R	9731991	2R_9731991_SNP [dm3] 2R_13844486_SNP [dm6]	C	A	2.050e^-4	0.617	INTRON Syngr
3L	13982728	3L_13982728_SNP [dm3] 3L_13989628_SNP [dm6]	T	C	2.053e^-4	0.617	INTRON CG17364
2R	10601506	2R_10601506_SNP [dm3] 2R_14714001_SNP [dm6]	G	T	2.063e^-4	0.617	UPSTREAM mspo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9908928	2R_9908928_SNP [dm3] 2R_14021423_SNP [dm6]	C	T	2.065e^-4	0.617	INTRON mam
X	10822845	X_10822845_SNP [dm3] X_10928812_SNP [dm6]	C	T	2.066e^-4	0.617	INTRON CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	18577629	3L_18577629_SNP [dm3] 3L_18584529_SNP [dm6]	G	A	2.070e^-4	0.617	DOWNSTREAM CR45435 INTERGENIC
2L	19998492	2L_19998492_SNP [dm3] 2L_19998492_SNP [dm6]	G	A	2.073e^-4	0.617	INTRON CG43861
X	1426556	X_1426556_SNP [dm3] X_1532523_SNP [dm6]	G	T	2.074e^-4	0.617	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	18426816	2L_18426816_SNP [dm3] 2L_18426816_SNP [dm6]	C	A	2.075e^-4	0.617	INTERGENIC
2R	13390601	2R_13390601_SNP [dm3] 2R_17503096_SNP [dm6]	C	T	2.077e^-4	0.617	INTRON CG43164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1614225	2L_1614225_SNP [dm3] 2L_1614225_SNP [dm6]	A	T	2.078e^-4	0.617	UPSTREAM RFeSP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
X	21269231	X_21269231_SNP [dm3] X_21398204_SNP [dm6]	A	C	2.084e^-4	0.617	UPSTREAM lcs INTERGENIC
2L	2685255	2L_2685255_SNP [dm3] 2L_2685255_SNP [dm6]	T	C	2.086e^-4	0.617	INTRON CG31690
2L	2896868	2L_2896868_SNP [dm3] 2L_2896868_SNP [dm6]	C	A	2.087e^-4	0.617	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	10750165	3R_10750165_SNP [dm3] 3R_14924443_SNP [dm6]	C	G	2.090e^-4	0.617	UPSTREAM CR45598 INTERGENIC
2L	7631268	2L_7631268_SNP [dm3] 2L_7631268_SNP [dm6]	T	A	2.092e^-4	0.617	INTERGENIC
2R	15061929	2R_15061929_SNP [dm3] 2R_19174424_SNP [dm6]	C	T	2.103e^-4	0.618	INTRON CG10737
X	5176414	X_5176414_SNP [dm3] X_5282381_SNP [dm6]	G	T	2.114e^-4	0.618	INTERGENIC
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	2.117e^-4	0.618	INTRON CG31690
2R	14706544	2R_14706544_SNP [dm3] 2R_18819039_SNP [dm6]	T	C	2.124e^-4	0.618	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10822829	X_10822829_SNP [dm3] X_10928796_SNP [dm6]	A	T	2.124e^-4	0.618	INTRON CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	5176420	X_5176420_SNP [dm3] X_5282387_SNP [dm6]	A	G	2.125e^-4	0.618	INTERGENIC
2L	11550609	2L_11550609_SNP [dm3] 2L_11550609_SNP [dm6]	A	G	2.126e^-4	0.618	UPSTREAM CR44494 INTERGENIC
2L	11953687	2L_11953687_SNP [dm3] 2L_11953687_SNP [dm6]	C	T	2.131e^-4	0.618	UPSTREAM bft EXON CR43314
3L	10982547	3L_10982547_SNP [dm3] 3L_10989447_SNP [dm6]	T	A	2.131e^-4	0.618	INTRON klu
2R	14520318	2R_14520318_SNP [dm3] 2R_18632813_SNP [dm6]	T	A	2.132e^-4	0.618	UTR_3_PRIME CG30122 UPSTREAM CG5482
X	10904171	X_10904171_SNP [dm3] X_11010138_SNP [dm6]	G	T	2.134e^-4	0.618	INTRON CG42339
2L	10661586	2L_10661586_SNP [dm3] 2L_10661586_SNP [dm6]	G	T	2.135e^-4	0.618	UPSTREAM CG31871 INTERGENIC
X	16978700	X_16978700_SNP [dm3] X_17084667_SNP [dm6]	A	G	2.138e^-4	0.618	INTRON CG8945
2L	12245879	2L_12245879_SNP [dm3] 2L_12245879_SNP [dm6]	A	T	2.143e^-4	0.618	INTRON aret
2L	838717	2L_838717_SNP [dm3] 2L_838717_SNP [dm6]	C	T	2.156e^-4	0.619	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	10828577	2R_10828577_SNP [dm3] 2R_14941072_SNP [dm6]	G	A	2.161e^-4	0.619	DOWNSTREAM Lap1 INTERGENIC
2R	13744184	2R_13744184_SNP [dm3] 2R_17856679_SNP [dm6]	G	T	2.161e^-4	0.619	UTR_5_PRIME olf186-F INTRON olf186-F
2L	6681796	2L_6681796_SNP [dm3] 2L_6681796_SNP [dm6]	A	C	2.161e^-4	0.619	INTRON Nhe3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10367647	2R_10367647_SNP [dm3] 2R_14480142_SNP [dm6]	A	G	2.162e^-4	0.619	INTERGENIC
2L	11480112	2L_11480112_SNP [dm3] 2L_11480112_SNP [dm6]	A	C	2.170e^-4	0.62	INTERGENIC
X	22107307	X_22107307_SNP [dm3] X_22705471_SNP [dm6]	T	C	2.171e^-4	0.62	INTRON CR44997	transposable element FlyBase
2R	13094406	2R_13094406_SNP [dm3] 2R_17206901_SNP [dm6]	T	C	2.192e^-4	0.624	INTERGENIC
2L	20695636	2L_20695636_SNP [dm3] 2L_20695636_SNP [dm6]	A	G	2.208e^-4	0.624	INTRON Hr38
2R	11392446	2R_11392446_SNP [dm3] 2R_15504941_SNP [dm6]	T	A	2.216e^-4	0.624	SYNONYMOUS_CODING Ir52c
2L	2554553	2L_2554553_SNP [dm3] 2L_2554553_SNP [dm6]	C	A	2.224e^-4	0.624	INTERGENIC
3L	18081809	3L_18081809_SNP [dm3] 3L_18088709_SNP [dm6]	C	T	2.225e^-4	0.624	UTR_3_PRIME CG13698 DOWNSTREAM CG13698
X	10822787	X_10822787_SNP [dm3] X_10928754_SNP [dm6]	C	G	2.226e^-4	0.624	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	15495770	3L_15495770_SNP [dm3] 3L_15502670_SNP [dm6]	T	G	2.227e^-4	0.624	DOWNSTREAM CG7857 INTRON CG7272	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	14807447	3L_14807447_SNP [dm3] 3L_14814347_SNP [dm6]	T	A	2.234e^-4	0.624	INTRON CG17839
2R	13633866	2R_13633866_SNP [dm3] 2R_17746361_SNP [dm6]	C	T	2.242e^-4	0.624	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
2L	19272470	2L_19272470_SNP [dm3] 2L_19272470_SNP [dm6]	C	A	2.245e^-4	0.624	INTRON CR44190
2R	10721104	2R_10721104_SNP [dm3] 2R_14833599_SNP [dm6]	G	A	2.246e^-4	0.624	NON_SYNONYMOUS_CODING CG10205 UTR_3_PRIME CG10205
2L	20634809	2L_20634809_SNP [dm3] 2L_20634809_SNP [dm6]	C	T	2.247e^-4	0.624	SYNONYMOUS_CODING CG17472
2R	14710387	2R_14710387_SNP [dm3] 2R_18822882_SNP [dm6]	T	C	2.249e^-4	0.624	SYNONYMOUS_CODING CG15097 UTR_3_PRIME CG15097 DOWNSTREAM Phb2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12370631	2R_12370631_SNP [dm3] 2R_16483126_SNP [dm6]	G	A	2.256e^-4	0.624	INTERGENIC
2R	9269620	2R_9269620_DEL [dm3] 2R_13382115_DEL [dm6]	CGCCCCCTCCTCTCACACAC...	C	2.261e^-4	0.624	INTERGENIC
2R	9269644	2R_9269644_SNP [dm3] 2R_13382139_SNP [dm6]	A	C	2.261e^-4	0.624	INTERGENIC
3L	11840419	3L_11840419_SNP [dm3] 3L_11847319_SNP [dm6]	A	G	2.269e^-4	0.624	DOWNSTREAM CG12521 INTERGENIC
X	22107703	X_22107703_SNP [dm3] X_22705867_SNP [dm6]	G	C	2.274e^-4	0.624	INTRON CR44997
X	5447460	X_5447460_SNP [dm3] X_5553427_SNP [dm6]	T	G	2.278e^-4	0.624	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
X	5477115	X_5477115_INS [dm3] X_5583082_INS [dm6]	A	AAGAAAAA	2.283e^-4	0.624	INTERGENIC
3L	15658303	3L_15658303_SNP [dm3] 3L_15665203_SNP [dm6]	G	T	2.284e^-4	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19589617	X_19589617_SNP [dm3] X_19695584_SNP [dm6]	A	C	2.288e^-4	0.624	UPSTREAM CG14229 INTERGENIC	transposable element FlyBase
2R	8409984	2R_8409984_DEL [dm3] 2R_12522479_DEL [dm6]	CTCTTTAAAGATTATTCCAA...	C	2.289e^-4	0.624	FRAME_SHIFT CG33632 DOWNSTREAM CG8569
2L	2548902	2L_2548902_SNP [dm3] 2L_2548902_SNP [dm6]	T	C	2.289e^-4	0.624	INTERGENIC
X	19587551	X_19587551_SNP [dm3] X_19693518_SNP [dm6]	T	G	2.291e^-4	0.624	UPSTREAM Mer DOWNSTREAM CG14229 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	19587552	X_19587552_SNP [dm3] X_19693519_SNP [dm6]	A	G	2.291e^-4	0.624	UPSTREAM Mer DOWNSTREAM CG14229 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	5452697	2L_5452697_SNP [dm3] 2L_5452697_SNP [dm6]	C	A	2.298e^-4	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14584438	2R_14584438_SNP [dm3] 2R_18696933_SNP [dm6]	C	G	2.298e^-4	0.624	SYNONYMOUS_CODING CG15071 INTRON Sik3
X	4911814	X_4911814_SNP [dm3] X_5017781_SNP [dm6]	G	A	2.299e^-4	0.624	INTRON CR44833	TF binding site mE1_TFBS_inv
X	6667008	X_6667008_SNP [dm3] X_6772975_SNP [dm6]	C	G	2.299e^-4	0.624	UTR_3_PRIME COQ7 INTRON shf	TF binding site mE1_TFBS_chinmo
2L	2275525	2L_2275525_SNP [dm3] 2L_2275525_SNP [dm6]	G	C	2.301e^-4	0.624	DOWNSTREAM CR43753 INTRON CR43753
2R	9496371	2R_9496371_SNP [dm3] 2R_13608866_SNP [dm6]	T	G	2.305e^-4	0.624	NON_SYNONYMOUS_CODING CG12464
X	8812034	X_8812034_MNP [dm3] X_8918001_MNP [dm6]	CAA	TTG	2.305e^-4	0.624	INTRON rdgA
2R	15012441	2R_15012441_SNP [dm3] 2R_19124936_SNP [dm6]	C	G	2.307e^-4	0.624	SYNONYMOUS_CODING CG15117 UTR_5_PRIME CG15117 INTRON CG15117
2L	4843704	2L_4843704_SNP [dm3] 2L_4843704_SNP [dm6]	G	C	2.310e^-4	0.624	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	10273424	X_10273424_SNP [dm3] X_10379391_SNP [dm6]	C	T	2.313e^-4	0.624	SYNONYMOUS_CODING CG32681 INTRON CG17841
3L	14249499	3L_14249499_SNP [dm3] 3L_14256399_SNP [dm6]	G	A	2.314e^-4	0.624	INTERGENIC
2R	11417678	2R_11417678_SNP [dm3] 2R_15530173_SNP [dm6]	T	G	2.317e^-4	0.624	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9695899	3L_9695899_SNP [dm3] 3L_9702799_SNP [dm6]	C	G	2.320e^-4	0.624	NON_SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5868141	2R_5868141_SNP [dm3] 2R_9980636_SNP [dm6]	T	C	2.323e^-4	0.624	UTR_3_PRIME eve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18288806	2R_18288806_SNP [dm3] 2R_22401301_SNP [dm6]	A	C	2.323e^-4	0.624	INTRON babos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3024694	3L_3024694_SNP [dm3] 3L_3024694_SNP [dm6]	G	A	2.327e^-4	0.624	SYNONYMOUS_CODING aly
3L	15669131	3L_15669131_SNP [dm3] 3L_15676031_SNP [dm6]	A	G	2.329e^-4	0.624	INTERGENIC
2L	838639	2L_838639_SNP [dm3] 2L_838639_SNP [dm6]	G	T	2.333e^-4	0.624	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	10601502	2R_10601502_SNP [dm3] 2R_14713997_SNP [dm6]	T	G	2.335e^-4	0.624	UPSTREAM mspo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	13390568	2R_13390568_SNP [dm3] 2R_17503063_SNP [dm6]	C	A	2.345e^-4	0.625	INTRON CG43164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8390049	2L_8390049_SNP [dm3] 2L_8390049_SNP [dm6]	C	T	2.346e^-4	0.625	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5877219	2R_5877219_SNP [dm3] 2R_9989714_SNP [dm6]	G	A	2.360e^-4	0.625	UPSTREAM TER94 & 1 other INTRON TER94	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2L	15748236	2L_15748236_SNP [dm3] 2L_15748236_SNP [dm6]	G	A	2.365e^-4	0.625	UPSTREAM CycE EXON CR44866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	6908471	X_6908471_SNP [dm3] X_7014438_SNP [dm6]	T	C	2.368e^-4	0.625	SYNONYMOUS_CODING CG4593 UPSTREAM CG3032	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1438269	X_1438269_INS [dm3] X_1544236_INS [dm6]	T	TTTCCTCCT	2.373e^-4	0.625	INTRON Mur2B	TF binding site mE1_TFBS_HSA
3L	18926436	3L_18926436_SNP [dm3] 3L_18933336_SNP [dm6]	G	T	2.373e^-4	0.625	INTRON CG32204
2L	2547733	2L_2547733_SNP [dm3] 2L_2547733_SNP [dm6]	G	C	2.375e^-4	0.625	INTERGENIC
X	20573459	X_20573459_SNP [dm3] X_20702432_SNP [dm6]	T	C	2.377e^-4	0.625	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8927284	2L_8927284_SNP [dm3] 2L_8927284_SNP [dm6]	G	C	2.378e^-4	0.625	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad
2L	2558294	2L_2558294_SNP [dm3] 2L_2558294_SNP [dm6]	C	T	2.380e^-4	0.625	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9058029	2L_9058029_SNP [dm3] 2L_9058029_SNP [dm6]	A	C	2.384e^-4	0.625	INTRON CG31708
X	6791116	X_6791116_SNP [dm3] X_6897083_SNP [dm6]	T	C	2.386e^-4	0.625	INTERGENIC
2R	676873	2R_676873_SNP [dm3] 2R_4789368_SNP [dm6]	G	A	2.393e^-4	0.625	UPSTREAM CG12547 INTERGENIC	transposable element FlyBase
2L	9417134	2L_9417134_SNP [dm3] 2L_9417134_SNP [dm6]	G	A	2.395e^-4	0.625	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9259902	2L_9259902_DEL [dm3] 2L_9259902_DEL [dm6]	CTCTTC	C	2.403e^-4	0.625	INTRON Ggamma30A
2L	5279962	2L_5279962_SNP [dm3] 2L_5279962_SNP [dm6]	C	T	2.404e^-4	0.625	SYNONYMOUS_CODING Bub1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	20593931	2L_20593931_SNP [dm3] 2L_20593931_SNP [dm6]	C	T	2.409e^-4	0.625	INTRON CR44909
X	22107039	X_22107039_SNP [dm3] X_22705203_SNP [dm6]	A	T	2.410e^-4	0.625	INTRON CR44997	transposable element FlyBase
2L	9468191	2L_9468191_SNP [dm3] 2L_9468191_SNP [dm6]	A	C	2.425e^-4	0.625	INTERGENIC
3L	15686460	3L_15686460_SNP [dm3] 3L_15693360_SNP [dm6]	A	G	2.425e^-4	0.625	INTERGENIC	silencer mE1_HDAC_PRE
3L	3858766	3L_3858766_SNP [dm3] 3L_3858766_SNP [dm6]	G	T	2.428e^-4	0.625	INTRON Awh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14534994	2R_14534994_SNP [dm3] 2R_18647489_SNP [dm6]	A	G	2.428e^-4	0.625	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2L	15758386	2L_15758386_SNP [dm3] 2L_15758386_SNP [dm6]	C	T	2.431e^-4	0.625	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15025286	X_15025286_SNP [dm3] X_15131253_SNP [dm6]	C	T	2.432e^-4	0.625	INTRON drd
2R	13747284	2R_13747284_SNP [dm3] 2R_17859779_SNP [dm6]	C	T	2.437e^-4	0.625	SYNONYMOUS_CODING olf186-F UPSTREAM CG14490
2L	19318237	2L_19318237_SNP [dm3] 2L_19318237_SNP [dm6]	G	T	2.452e^-4	0.625	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10612435	2R_10612435_DEL [dm3] 2R_14724930_DEL [dm6]	TACTTGACTAGTTTGTACAG...	GC	2.459e^-4	0.625	INTERGENIC
2L	11550658	2L_11550658_SNP [dm3] 2L_11550658_SNP [dm6]	A	C	2.462e^-4	0.625	UPSTREAM CR44494 INTERGENIC
X	9436939	X_9436939_SNP [dm3] X_9542906_SNP [dm6]	C	T	2.466e^-4	0.625	INTRON CG32700
2R	9601314	2R_9601314_SNP [dm3] 2R_13713809_SNP [dm6]	T	C	2.467e^-4	0.625	SYNONYMOUS_CODING fas
X	9982964	X_9982964_SNP [dm3] X_10088931_SNP [dm6]	C	T	2.468e^-4	0.625	INTRON RhoU	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5278663	2L_5278663_SNP [dm3] 2L_5278663_SNP [dm6]	C	A	2.469e^-4	0.625	UPSTREAM Bub1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	5278675	2L_5278675_SNP [dm3] 2L_5278675_SNP [dm6]	T	C	2.469e^-4	0.625	UPSTREAM Bub1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	2685239	2L_2685239_SNP [dm3] 2L_2685239_SNP [dm6]	A	C	2.479e^-4	0.625	INTRON CG31690
2L	20546948	2L_20546948_SNP [dm3] 2L_20546948_SNP [dm6]	A	T	2.486e^-4	0.625	INTERGENIC
2L	9316447	2L_9316447_SNP [dm3] 2L_9316447_SNP [dm6]	G	T	2.487e^-4	0.625	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3312455	3L_3312455_SNP [dm3] 3L_3312455_SNP [dm6]	T	G	2.489e^-4	0.625	INTRON ZnT63C	TF binding site mE1_TFBS_cad
2L	8768130	2L_8768130_SNP [dm3] 2L_8768130_SNP [dm6]	T	C	2.491e^-4	0.625	INTRON CG9463
2L	11574622	2L_11574622_SNP [dm3] 2L_11574622_SNP [dm6]	T	A	2.493e^-4	0.625	INTERGENIC
X	17691660	X_17691660_SNP [dm3] X_17797627_SNP [dm6]	T	A	2.495e^-4	0.625	INTRON OdsH
2R	13482990	2R_13482990_SNP [dm3] 2R_17595485_SNP [dm6]	G	A	2.498e^-4	0.625	NON_SYNONYMOUS_CODING CG11423 INTRON lack
2R	12699002	2R_12699002_SNP [dm3] 2R_16811497_SNP [dm6]	G	C	2.499e^-4	0.625	UPSTREAM CR44379 DOWNSTREAM CR44465 INTERGENIC
2L	10271186	2L_10271186_SNP [dm3] 2L_10271186_SNP [dm6]	T	C	2.507e^-4	0.625	SYNONYMOUS_CODING Mulk DOWNSTREAM trk
3L	18079223	3L_18079223_SNP [dm3] 3L_18086123_SNP [dm6]	T	G	2.508e^-4	0.625	UPSTREAM CR43253 DOWNSTREAM CG34253 EXON CR32194
2L	20618459	2L_20618459_SNP [dm3] 2L_20618459_SNP [dm6]	G	C	2.510e^-4	0.625	UPSTREAM mir-288 INTRON CR44909 EXON mir-288
3L	20175380	3L_20175380_SNP [dm3] 3L_20182280_SNP [dm6]	T	G	2.513e^-4	0.625	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
3L	18932418	3L_18932418_SNP [dm3] 3L_18939318_SNP [dm6]	C	G	2.517e^-4	0.625	INTRON CG32204
2R	6329266	2R_6329266_SNP [dm3] 2R_10441761_SNP [dm6]	T	C	2.518e^-4	0.625	INTRON Galphao
2R	18512495	2R_18512495_SNP [dm3] 2R_22624990_SNP [dm6]	A	G	2.522e^-4	0.625	INTRON CG33143
2R	13194205	2R_13194205_INS [dm3] 2R_17306700_INS [dm6]	T	TCTTT	2.526e^-4	0.625	DOWNSTREAM CR43661 INTRON mbl
3L	1834350	3L_1834350_SNP [dm3] 3L_1834350_SNP [dm6]	T	C	2.533e^-4	0.625	SYNONYMOUS_CODING Cpr62Bb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20043584	2L_20043584_MNP [dm3] 2L_20043584_MNP [dm6]	TGTCTTT	CACAAAG	2.534e^-4	0.625	INTRON sNPF
2R	10572637	2R_10572637_SNP [dm3] 2R_14685132_SNP [dm6]	C	T	2.535e^-4	0.625	INTRON mspo
2R	14160217	2R_14160217_SNP [dm3] 2R_18272712_SNP [dm6]	A	T	2.537e^-4	0.625	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2468113	3L_2468113_SNP [dm3] 3L_2468113_SNP [dm6]	G	T	2.544e^-4	0.625	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6680128	2L_6680128_SNP [dm3] 2L_6680128_SNP [dm6]	G	C	2.545e^-4	0.625	INTRON Nhe3
X	6091443	X_6091443_SNP [dm3] X_6197410_SNP [dm6]	T	A	2.546e^-4	0.625	NON_SYNONYMOUS_CODING CG32751 UPSTREAM CG32750
X	19587356	X_19587356_SNP [dm3] X_19693323_SNP [dm6]	G	A	2.547e^-4	0.625	DOWNSTREAM CG14229 INTRON Mer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3L	13982722	3L_13982722_SNP [dm3] 3L_13989622_SNP [dm6]	C	A	2.550e^-4	0.625	DOWNSTREAM CG9040 INTRON CG17364
2R	15093076	2R_15093076_SNP [dm3] 2R_19205571_SNP [dm6]	G	C	2.551e^-4	0.625	INTRON hppy
2R	18319287	2R_18319287_SNP [dm3] 2R_22431782_SNP [dm6]	C	A	2.556e^-4	0.625	INTERGENIC
2L	19998506	2L_19998506_SNP [dm3] 2L_19998506_SNP [dm6]	G	A	2.556e^-4	0.625	INTRON CG43861
2R	13633670	2R_13633670_SNP [dm3] 2R_17746165_SNP [dm6]	T	C	2.558e^-4	0.625	DOWNSTREAM Ir54a INTRON sub
X	9162677	X_9162677_DEL [dm3] X_9268644_DEL [dm6]	CTGCTGTTGTTGCAACTCC...	C	2.564e^-4	0.625	CODON_DELETION CG17440 UPSTREAM Erk7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12230089	X_12230089_SNP [dm3] X_12336056_SNP [dm6]	T	A	2.568e^-4	0.625	DOWNSTREAM Ten-a INTERGENIC
3L	13711228	3L_13711228_SNP [dm3] 3L_13718128_SNP [dm6]	G	T	2.568e^-4	0.625	INTRON bru-3
X	15499325	X_15499325_SNP [dm3] X_15605292_SNP [dm6]	C	T	2.571e^-4	0.625	SYNONYMOUS_CODING sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5874811	3L_5874811_SNP [dm3] 3L_5881711_SNP [dm6]	T	A	2.572e^-4	0.625	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9497377	2R_9497377_SNP [dm3] 2R_13609872_SNP [dm6]	A	T	2.579e^-4	0.625	UPSTREAM CG12464 INTERGENIC
2L	1891774	2L_1891774_SNP [dm3] 2L_1891774_SNP [dm6]	T	A	2.579e^-4	0.625	INTRON CG7337
X	19587554	X_19587554_SNP [dm3] X_19693521_SNP [dm6]	A	G	2.582e^-4	0.625	UPSTREAM Mer DOWNSTREAM CG14229 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	838455	2L_838455_DEL [dm3] 2L_838455_DEL [dm6]	AGATAGA	A	2.586e^-4	0.625	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6490590	2R_6490590_SNP [dm3] 2R_10603085_SNP [dm6]	G	C	2.589e^-4	0.625	INTRON psq	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1010628	3L_1010628_SNP [dm3] 3L_1010628_SNP [dm6]	G	A	2.592e^-4	0.625	INTRON trio
2R	8667417	2R_8667417_SNP [dm3] 2R_12779912_SNP [dm6]	T	C	2.593e^-4	0.625	UPSTREAM sca DOWNSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2506085	3L_2506085_SNP [dm3] 3L_2506085_SNP [dm6]	G	C	2.596e^-4	0.625	UTR_3_PRIME Spn DOWNSTREAM Spn	TF binding site BDTNP1_TFBS_twi
3R	13687963	3R_13687963_DEL [dm3] 3R_17862241_DEL [dm6]	ATACTG	A	2.602e^-4	0.625	INTRON tinc
2L	8979711	2L_8979711_SNP [dm3] 2L_8979711_SNP [dm6]	T	A	2.608e^-4	0.625	UPSTREAM CG18662 INTRON CG13101
3L	9935401	3L_9935401_SNP [dm3] 3L_9942301_SNP [dm6]	T	C	2.610e^-4	0.625	INTRON CG34356
2L	2695286	2L_2695286_SNP [dm3] 2L_2695286_SNP [dm6]	G	A	2.613e^-4	0.625	DOWNSTREAM CG15398 INTRON CG31690
2L	6765494	2L_6765494_SNP [dm3] 2L_6765494_SNP [dm6]	T	C	2.621e^-4	0.625	SYNONYMOUS_CODING CG11321
2L	7898115	2L_7898115_SNP [dm3] 2L_7898115_SNP [dm6]	C	T	2.624e^-4	0.625	INTRON Snoo	TF binding site mE1_TFBS_cad
2R	8667248	2R_8667248_SNP [dm3] 2R_12779743_SNP [dm6]	T	C	2.625e^-4	0.625	UPSTREAM sca DOWNSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26927413	3R_26927413_SNP [dm3] 3R_31101691_SNP [dm6]	G	A	2.625e^-4	0.625	UPSTREAM CG15553 INTERGENIC
X	6511555	X_6511555_SNP [dm3] X_6617522_SNP [dm6]	T	C	2.625e^-4	0.625	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16527751	2R_16527751_SNP [dm3] 2R_20640246_SNP [dm6]	C	T	2.642e^-4	0.625	SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
X	10936255	X_10936255_SNP [dm3] X_11042222_SNP [dm6]	T	C	2.645e^-4	0.625	INTERGENIC
2R	9639012	2R_9639012_SNP [dm3] 2R_13751507_SNP [dm6]	G	A	2.648e^-4	0.625	INTERGENIC	transposable element FlyBase
2R	14306615	2R_14306615_SNP [dm3] 2R_18419110_SNP [dm6]	G	A	2.649e^-4	0.625	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad
2L	13942414	2L_13942414_SNP [dm3] 2L_13942414_SNP [dm6]	G	T	2.656e^-4	0.625	INTRON Ance-3
X	19587629	X_19587629_SNP [dm3] X_19693596_SNP [dm6]	A	G	2.657e^-4	0.625	UPSTREAM Mer DOWNSTREAM CG14229 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	9202525	2L_9202525_SNP [dm3] 2L_9202525_SNP [dm6]	A	C	2.657e^-4	0.625	INTRON tai
3R	13438042	3R_13438042_SNP [dm3] 3R_17612320_SNP [dm6]	T	C	2.657e^-4	0.625	UPSTREAM Edg91 & 1 other INTERGENIC
3R	26780691	3R_26780691_SNP [dm3] 3R_30954969_SNP [dm6]	G	A	2.669e^-4	0.625	INTERGENIC
2L	18426797	2L_18426797_SNP [dm3] 2L_18426797_SNP [dm6]	T	G	2.674e^-4	0.625	INTERGENIC
2L	5685130	2L_5685130_SNP [dm3] 2L_5685130_SNP [dm6]	G	A	2.680e^-4	0.625	INTERGENIC
2L	10603285	2L_10603285_SNP [dm3] 2L_10603285_SNP [dm6]	G	C	2.681e^-4	0.625	INTRON Trim9
X	9259149	X_9259149_SNP [dm3] X_9365116_SNP [dm6]	A	T	2.682e^-4	0.625	INTRON mgl
X	13352519	X_13352519_SNP [dm3] X_13458486_SNP [dm6]	T	A	2.689e^-4	0.625	UPSTREAM CG34324 INTRON Neto
X	19588464	X_19588464_SNP [dm3] X_19694431_SNP [dm6]	A	T	2.693e^-4	0.625	UTR_3_PRIME CG14229 UPSTREAM Mer	TF binding site BDTNP1_TFBS_dl
2L	3261192	2L_3261192_SNP [dm3] 2L_3261192_SNP [dm6]	G	T	2.696e^-4	0.625	DOWNSTREAM CR45338 EXON CR45337
2L	3130960	2L_3130960_SNP [dm3] 2L_3130960_SNP [dm6]	C	A	2.699e^-4	0.625	INTRON toc
X	6090955	X_6090955_SNP [dm3] X_6196922_SNP [dm6]	C	T	2.699e^-4	0.625	UPSTREAM CG32750 INTRON CG32751
2R	18430515	2R_18430515_SNP [dm3] 2R_22543010_SNP [dm6]	A	T	2.700e^-4	0.625	INTRON px	TF binding site mE1_TFBS_cad
2R	4108441	2R_4108441_SNP [dm3] 2R_8220936_SNP [dm6]	G	A	2.702e^-4	0.625	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	20077739	3L_20077739_SNP [dm3] 3L_20084639_SNP [dm6]	C	T	2.706e^-4	0.625	INTRON sNPF-R
2R	6264867	2R_6264867_SNP [dm3] 2R_10377362_SNP [dm6]	T	A	2.706e^-4	0.625	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b
3L	18116151	3L_18116151_SNP [dm3] 3L_18123051_SNP [dm6]	C	A	2.713e^-4	0.625	INTERGENIC
3L	12420285	3L_12420285_SNP [dm3] 3L_12427185_SNP [dm6]	G	T	2.721e^-4	0.625	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	17597404	2R_17597404_SNP [dm3] 2R_21709899_SNP [dm6]	A	T	2.726e^-4	0.625	UTR_3_PRIME CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	3218667	X_3218667_SNP [dm3] X_3324634_SNP [dm6]	T	A	2.727e^-4	0.625	INTRON CR44886 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7498605	2L_7498605_SNP [dm3] 2L_7498605_SNP [dm6]	T	C	2.728e^-4	0.625	UTR_3_PRIME RapGAP1
X	2882046	X_2882046_SNP [dm3] X_2988013_SNP [dm6]	A	G	2.732e^-4	0.625	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10672660	2R_10672660_SNP [dm3] 2R_14785155_SNP [dm6]	G	A	2.735e^-4	0.625	INTRON kn
2L	11550671	2L_11550671_DEL [dm3] 2L_11550671_DEL [dm6]	AC	A	2.736e^-4	0.625	UPSTREAM CR44494 INTERGENIC
2L	11550674	2L_11550674_SNP [dm3] 2L_11550674_SNP [dm6]	T	A	2.736e^-4	0.625	UPSTREAM CR44494 INTERGENIC
2L	10630897	2L_10630897_SNP [dm3] 2L_10630897_SNP [dm6]	G	A	2.748e^-4	0.625	SYNONYMOUS_CODING CG7329
X	1845551	X_1845551_SNP [dm3] X_1951518_SNP [dm6]	C	T	2.750e^-4	0.625	INTRON Hr4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13962491	2R_13962491_SNP [dm3] 2R_18074986_SNP [dm6]	G	T	2.752e^-4	0.625	DOWNSTREAM CR45022 INTRON CG34386
2L	10781826	2L_10781826_SNP [dm3] 2L_10781826_SNP [dm6]	A	G	2.752e^-4	0.625	INTRON CG31869
2L	11550680	2L_11550680_SNP [dm3] 2L_11550680_SNP [dm6]	C	A	2.753e^-4	0.625	UPSTREAM CR44494 INTERGENIC
2R	12019270	2R_12019270_SNP [dm3] 2R_16131765_SNP [dm6]	A	G	2.764e^-4	0.625	SYNONYMOUS_CODING spin	TF binding site mE1_TFBS_cad
2L	9089667	2L_9089667_SNP [dm3] 2L_9089667_SNP [dm6]	G	A	2.765e^-4	0.625	DOWNSTREAM Toll-4 INTERGENIC
2R	11838610	2R_11838610_SNP [dm3] 2R_15951105_SNP [dm6]	A	T	2.768e^-4	0.625	UTR_5_PRIME Strn-Mlck DOWNSTREAM Strn-Mlck INTRON Strn-Mlck
2R	8427933	2R_8427933_SNP [dm3] 2R_12540428_SNP [dm6]	T	A	2.770e^-4	0.625	INTRON fra	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1764710	2R_1764710_SNP [dm3] 2R_5877205_SNP [dm6]	C	A	2.770e^-4	0.625	INTERGENIC
2L	19293291	2L_19293291_SNP [dm3] 2L_19293291_SNP [dm6]	G	A	2.770e^-4	0.625	INTERGENIC
2L	6148145	2L_6148145_SNP [dm3] 2L_6148145_SNP [dm6]	A	G	2.773e^-4	0.625	INTERGENIC
3L	10061721	3L_10061721_SNP [dm3] 3L_10068621_SNP [dm6]	A	G	2.779e^-4	0.625	INTRON dpr6
2L	11550605	2L_11550605_SNP [dm3] 2L_11550605_SNP [dm6]	A	T	2.782e^-4	0.625	UPSTREAM CR44494 INTERGENIC
X	9229517	X_9229517_SNP [dm3] X_9335484_SNP [dm6]	A	G	2.786e^-4	0.625	INTRON CG34449
3L	12442087	3L_12442087_SNP [dm3] 3L_12448987_SNP [dm6]	C	A	2.789e^-4	0.625	INTERGENIC
2R	10608749	2R_10608749_SNP [dm3] 2R_14721244_SNP [dm6]	C	G	2.790e^-4	0.625	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2562853	2L_2562853_SNP [dm3] 2L_2562853_SNP [dm6]	A	C	2.793e^-4	0.625	UTR_3_PRIME Cyp309a1 DOWNSTREAM Cyp309a1
2R	14308009	2R_14308009_SNP [dm3] 2R_18420504_SNP [dm6]	A	G	2.794e^-4	0.625	UTR_3_PRIME Dp1 UPSTREAM CG5174
2R	10532180	2R_10532180_SNP [dm3] 2R_14644675_SNP [dm6]	G	A	2.799e^-4	0.626	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16507643	2L_16507643_SNP [dm3] 2L_16507643_SNP [dm6]	A	G	2.818e^-4	0.629	DOWNSTREAM CG5953 & 1 other INTERGENIC
2L	9082510	2L_9082510_SNP [dm3] 2L_9082510_SNP [dm6]	A	T	2.821e^-4	0.629	INTERGENIC
2L	6001044	2L_6001044_SNP [dm3] 2L_6001044_SNP [dm6]	G	A	2.830e^-4	0.629	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10863508	X_10863508_SNP [dm3] X_10969475_SNP [dm6]	A	G	2.831e^-4	0.629	SPLICE_SITE_REGION CG42339 INTRON CG42339
2L	8390046	2L_8390046_SNP [dm3] 2L_8390046_SNP [dm6]	G	A	2.833e^-4	0.629	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi
2R	4432039	2R_4432039_DEL [dm3] 2R_8544534_DEL [dm6]	TTT	T	2.841e^-4	0.629	UPSTREAM CR44279 INTERGENIC
X	10721550	X_10721550_SNP [dm3] X_10827517_SNP [dm6]	T	C	2.846e^-4	0.629	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4843699	2L_4843699_SNP [dm3] 2L_4843699_SNP [dm6]	A	G	2.846e^-4	0.629	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	13438066	3R_13438066_SNP [dm3] 3R_17612344_SNP [dm6]	C	T	2.850e^-4	0.629	UPSTREAM Edg91 & 1 other INTERGENIC
2L	11550799	2L_11550799_DEL [dm3] 2L_11550799_DEL [dm6]	CTA	T	2.857e^-4	0.629	UPSTREAM CR44494 INTERGENIC
X	20485854	X_20485854_SNP [dm3] X_20614827_SNP [dm6]	T	C	2.859e^-4	0.629	INTRON RunxA
2R	11381862	2R_11381862_SNP [dm3] 2R_15494357_SNP [dm6]	C	T	2.862e^-4	0.629	INTRON CG12964
X	10273589	X_10273589_SNP [dm3] X_10379556_SNP [dm6]	G	C	2.871e^-4	0.629	SYNONYMOUS_CODING CG32681 INTRON CG17841
X	10912108	X_10912108_SNP [dm3] X_11018075_SNP [dm6]	T	C	2.882e^-4	0.629	INTRON CG42339	TF binding site BDTNP1_TFBS_dl
2R	10612541	2R_10612541_SNP [dm3] 2R_14725036_SNP [dm6]	G	A	2.883e^-4	0.629	INTERGENIC
2L	9261227	2L_9261227_SNP [dm3] 2L_9261227_SNP [dm6]	T	C	2.884e^-4	0.629	DOWNSTREAM CR45262 INTRON Ggamma30A
2R	10441975	2R_10441975_SNP [dm3] 2R_14554470_SNP [dm6]	T	C	2.884e^-4	0.629	UPSTREAM CG43919 INTRON ttv
2R	17809331	2R_17809331_SNP [dm3] 2R_21921826_SNP [dm6]	G	A	2.888e^-4	0.629	INTRON Fili	TF binding site mE1_TFBS_inv
X	15499022	X_15499022_DEL [dm3] X_15604989_DEL [dm6]	CTGTGTGTC	C	2.890e^-4	0.629	UTR_3_PRIME sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	3600866	3R_3600866_SNP [dm3] 3R_7775144_SNP [dm6]	A	C	2.892e^-4	0.629	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10381522	2R_10381522_SNP [dm3] 2R_14494017_SNP [dm6]	T	A	2.895e^-4	0.629	INTRON L	TF binding site mE1_TFBS_cad
2L	6588784	2L_6588784_SNP [dm3] 2L_6588784_SNP [dm6]	C	G	2.895e^-4	0.629	INTRON CG11319
3R	3174658	3R_3174658_SNP [dm3] 3R_7348936_SNP [dm6]	C	T	2.899e^-4	0.629	UTR_3_PRIME CG43290
2R	6848758	2R_6848758_SNP [dm3] 2R_10961253_SNP [dm6]	T	G	2.902e^-4	0.629	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8669236	2R_8669236_SNP [dm3] 2R_12781731_SNP [dm6]	G	A	2.905e^-4	0.629	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5150488	2L_5150488_SNP [dm3] 2L_5150488_SNP [dm6]	G	A	2.915e^-4	0.629	INTRON Msp300
3R	5696125	3R_5696125_SNP [dm3] 3R_9870403_SNP [dm6]	G	A	2.919e^-4	0.629	INTERGENIC
2R	14706884	2R_14706884_SNP [dm3] 2R_18819379_SNP [dm6]	T	G	2.929e^-4	0.629	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17585092	3L_17585092_SNP [dm3] 3L_17591992_SNP [dm6]	G	T	2.932e^-4	0.629	INTRON Eip74EF
2R	8666408	2R_8666408_SNP [dm3] 2R_12778903_SNP [dm6]	T	C	2.933e^-4	0.629	EXON CR45266	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	2988751	X_2988751_SNP [dm3] X_3094718_SNP [dm6]	G	C	2.934e^-4	0.629	INTRON kirre	regulatory region REDfly_CRMs
2L	9416993	2L_9416993_SNP [dm3] 2L_9416993_SNP [dm6]	T	A	2.939e^-4	0.629	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2445265	2L_2445265_SNP [dm3] 2L_2445265_SNP [dm6]	G	T	2.940e^-4	0.629	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs
2R	8166718	2R_8166718_SNP [dm3] 2R_12279213_SNP [dm6]	C	T	2.941e^-4	0.629	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	9334599	2R_9334599_SNP [dm3] 2R_13447094_SNP [dm6]	A	G	2.941e^-4	0.629	UPSTREAM CG30062 INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	18221231	3L_18221231_SNP [dm3] 3L_18228131_SNP [dm6]	G	T	2.948e^-4	0.629	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8389640	2L_8389640_SNP [dm3] 2L_8389640_SNP [dm6]	T	G	2.951e^-4	0.629	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
3R	13112802	3R_13112802_SNP [dm3] 3R_17287080_SNP [dm6]	A	T	2.956e^-4	0.629	UPSTREAM CR43490 EXON CR43489
3L	12710782	3L_12710782_SNP [dm3] 3L_12717682_SNP [dm6]	G	A	2.959e^-4	0.629	INTERGENIC
3L	11068248	3L_11068248_SNP [dm3] 3L_11075148_SNP [dm6]	C	A	2.960e^-4	0.629	SYNONYMOUS_CODING CG7839 UPSTREAM l_3_01239
X	4532479	X_4532479_SNP [dm3] X_4638446_SNP [dm6]	A	G	2.962e^-4	0.629	SYNONYMOUS_CODING pon DOWNSTREAM CG3081	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10675105	2R_10675105_SNP [dm3] 2R_14787600_SNP [dm6]	G	A	2.963e^-4	0.629	INTRON kn
2L	371448	2L_371448_SNP [dm3] 2L_371448_SNP [dm6]	G	A	2.966e^-4	0.629	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13710402	2R_13710402_SNP [dm3] 2R_17822897_SNP [dm6]	A	G	2.967e^-4	0.629	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
2R	10572649	2R_10572649_SNP [dm3] 2R_14685144_SNP [dm6]	T	C	2.967e^-4	0.629	INTRON mspo
2L	13104289	2L_13104289_SNP [dm3] 2L_13104289_SNP [dm6]	A	T	2.968e^-4	0.629	UPSTREAM CR45461 INTERGENIC
3R	22515934	3R_22515934_SNP [dm3] 3R_26690212_SNP [dm6]	C	T	2.973e^-4	0.629	INTERGENIC
2R	13192027	2R_13192027_SNP [dm3] 2R_17304522_SNP [dm6]	C	T	2.978e^-4	0.63	INTRON mbl
3L	11063307	3L_11063307_SNP [dm3] 3L_11070207_SNP [dm6]	T	G	2.988e^-4	0.63	UPSTREAM Mocs1 & 1 other INTERGENIC
2L	19318067	2L_19318067_SNP [dm3] 2L_19318067_SNP [dm6]	T	C	2.989e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_cad
2R	676871	2R_676871_SNP [dm3] 2R_4789366_SNP [dm6]	T	A	2.989e^-4	0.63	UPSTREAM CG12547 INTERGENIC	transposable element FlyBase
3L	19326698	3L_19326698_SNP [dm3] 3L_19333598_SNP [dm6]	C	T	3.006e^-4	0.63	INTRON pip
2L	9459107	2L_9459107_SNP [dm3] 2L_9459107_SNP [dm6]	G	T	3.007e^-4	0.63	INTRON numb	TF binding site BDTNP1_TFBS_dl
2R	17687956	2R_17687956_SNP [dm3] 2R_21800451_SNP [dm6]	T	G	3.009e^-4	0.63	SYNONYMOUS_CODING CG4386	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26896970	3R_26896970_SNP [dm3] 3R_31071248_SNP [dm6]	C	T	3.021e^-4	0.63	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
2R	10532294	2R_10532294_SNP [dm3] 2R_14644789_SNP [dm6]	C	T	3.026e^-4	0.63	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9982206	X_9982206_SNP [dm3] X_10088173_SNP [dm6]	A	T	3.030e^-4	0.63	INTRON RhoU	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10273187	X_10273187_SNP [dm3] X_10379154_SNP [dm6]	A	G	3.034e^-4	0.63	SYNONYMOUS_CODING CG32681 INTRON CG17841
3L	13836428	3L_13836428_SNP [dm3] 3L_13843328_SNP [dm6]	C	A	3.038e^-4	0.63	UPSTREAM Tsp68C & 1 other INTERGENIC
2L	17784140	2L_17784140_SNP [dm3] 2L_17784140_SNP [dm6]	T	G	3.039e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	4104626	2R_4104626_SNP [dm3] 2R_8217121_SNP [dm6]	A	G	3.044e^-4	0.63	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_cad
3L	15932819	3L_15932819_SNP [dm3] 3L_15939719_SNP [dm6]	C	G	3.046e^-4	0.63	INTRON Pka-C3
3L	8582565	3L_8582565_INS [dm3] 3L_8589465_INS [dm6]	T	TGCTAGAAAAGATAA...	3.052e^-4	0.63	UPSTREAM CG43078 INTRON CG43078
2L	995417	2L_995417_SNP [dm3] 2L_995417_SNP [dm6]	A	T	3.052e^-4	0.63	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9345995	2L_9345995_SNP [dm3] 2L_9345995_SNP [dm6]	G	A	3.052e^-4	0.63	INTERGENIC
X	20611583	X_20611583_DEL [dm3] X_20740556_DEL [dm6]	GA	G	3.055e^-4	0.63	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	9326748	2L_9326748_SNP [dm3] 2L_9326748_SNP [dm6]	A	G	3.058e^-4	0.63	UPSTREAM CR45457 & 1 other DOWNSTREAM CR45456 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8915792	2R_8915792_INS [dm3] 2R_13028287_INS [dm6]	C	CTGCTACC	3.059e^-4	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2548922	2L_2548922_SNP [dm3] 2L_2548922_SNP [dm6]	T	A	3.063e^-4	0.63	INTERGENIC
X	10776416	X_10776416_SNP [dm3] X_10882383_SNP [dm6]	G	A	3.067e^-4	0.63	SYNONYMOUS_CODING Ork1
3L	12420632	3L_12420632_DEL [dm3] 3L_12427532_DEL [dm6]	CTAC	C	3.068e^-4	0.63	INTRON toe	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	14047240	3L_14047240_SNP [dm3] 3L_14054140_SNP [dm6]	T	C	3.069e^-4	0.63	NON_SYNONYMOUS_CODING CG32138 DOWNSTREAM CG43986	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9104279	2L_9104279_SNP [dm3] 2L_9104279_SNP [dm6]	C	T	3.070e^-4	0.63	INTERGENIC
3L	18590268	3L_18590268_SNP [dm3] 3L_18597168_SNP [dm6]	G	C	3.071e^-4	0.63	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
2L	14145920	2L_14145920_SNP [dm3] 2L_14145920_SNP [dm6]	A	G	3.075e^-4	0.63	INTRON CG17341
2L	14145921	2L_14145921_SNP [dm3] 2L_14145921_SNP [dm6]	G	A	3.075e^-4	0.63	INTRON CG17341
X	10273595	X_10273595_SNP [dm3] X_10379562_SNP [dm6]	C	T	3.079e^-4	0.63	SYNONYMOUS_CODING CG32681 INTRON CG17841
2L	13942015	2L_13942015_DEL [dm3] 2L_13942015_DEL [dm6]	TT	T	3.083e^-4	0.63	INTRON Ance-3
2L	18417858	2L_18417858_SNP [dm3] 2L_18417858_SNP [dm6]	A	G	3.085e^-4	0.63	INTERGENIC
2R	8426852	2R_8426852_SNP [dm3] 2R_12539347_SNP [dm6]	G	A	3.086e^-4	0.63	INTRON fra
2R	14706500	2R_14706500_SNP [dm3] 2R_18818995_SNP [dm6]	T	C	3.097e^-4	0.631	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13136550	X_13136550_SNP [dm3] X_13242517_SNP [dm6]	C	T	3.098e^-4	0.631	INTRON mew
2R	15545067	2R_15545067_SNP [dm3] 2R_19657562_SNP [dm6]	A	T	3.105e^-4	0.632	UPSTREAM CG15125 EXON CR44214
2R	14535001	2R_14535001_SNP [dm3] 2R_18647496_SNP [dm6]	T	G	3.108e^-4	0.632	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
2R	6490608	2R_6490608_SNP [dm3] 2R_10603103_SNP [dm6]	T	C	3.112e^-4	0.632	INTRON psq	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12813812	2R_12813812_SNP [dm3] 2R_16926307_SNP [dm6]	A	T	3.118e^-4	0.632	INTRON Pkc53E
2L	5684201	2L_5684201_SNP [dm3] 2L_5684201_SNP [dm6]	T	A	3.120e^-4	0.632	INTERGENIC
2R	9637298	2R_9637298_SNP [dm3] 2R_13749793_SNP [dm6]	A	C	3.125e^-4	0.632	DOWNSTREAM fas INTERGENIC
2L	12177296	2L_12177296_SNP [dm3] 2L_12177296_SNP [dm6]	G	T	3.133e^-4	0.632	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6853015	2R_6853015_SNP [dm3] 2R_10965510_SNP [dm6]	C	A	3.138e^-4	0.632	INTERGENIC
3R	10750076	3R_10750076_SNP [dm3] 3R_14924354_SNP [dm6]	A	C	3.140e^-4	0.632	UPSTREAM CR45598 INTERGENIC
2L	6012997	2L_6012997_SNP [dm3] 2L_6012997_SNP [dm6]	T	A	3.147e^-4	0.632	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	3272816	2L_3272816_SNP [dm3] 2L_3272816_SNP [dm6]	G	T	3.149e^-4	0.632	INTERGENIC
2L	19973686	2L_19973686_SNP [dm3] 2L_19973686_SNP [dm6]	A	T	3.150e^-4	0.632	INTRON CG43861
2R	2057980	2R_2057980_DEL [dm3] 2R_6170475_DEL [dm6]	TT	T	3.151e^-4	0.632	DOWNSTREAM tRNA:R2:42Ab INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5720687	2L_5720687_SNP [dm3] 2L_5720687_SNP [dm6]	T	C	3.153e^-4	0.632	UPSTREAM sip1 & 1 other INTRON CG11149
2L	17923288	2L_17923288_SNP [dm3] 2L_17923288_SNP [dm6]	T	A	3.159e^-4	0.632	INTERGENIC
2L	5708796	2L_5708796_SNP [dm3] 2L_5708796_SNP [dm6]	G	A	3.160e^-4	0.632	INTRON CG7236
2L	13351175	2L_13351175_SNP [dm3] 2L_13351175_SNP [dm6]	T	C	3.173e^-4	0.633	NON_SYNONYMOUS_CODING CG9395
2L	20602020	2L_20602020_INS [dm3] 2L_20602020_INS [dm6]	C	CTGTATGTTACCGGCAAAAT...	3.174e^-4	0.633	INTRON CR44909
3L	9699387	3L_9699387_SNP [dm3] 3L_9706287_SNP [dm6]	G	C	3.176e^-4	0.633	NON_SYNONYMOUS_CODING CG16711	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22105656	X_22105656_SNP [dm3] X_22703820_SNP [dm6]	T	G	3.181e^-4	0.633	INTRON CR44997	transposable element FlyBase
2R	14141991	2R_14141991_SNP [dm3] 2R_18254486_SNP [dm6]	C	G	3.183e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22107332	X_22107332_SNP [dm3] X_22705496_SNP [dm6]	G	T	3.183e^-4	0.633	INTRON CR44997	transposable element FlyBase
2R	9575268	2R_9575268_SNP [dm3] 2R_13687763_SNP [dm6]	A	C	3.197e^-4	0.633	INTRON fas
2L	2695275	2L_2695275_SNP [dm3] 2L_2695275_SNP [dm6]	C	T	3.199e^-4	0.633	DOWNSTREAM CG15398 INTRON CG31690
3L	18746778	3L_18746778_SNP [dm3] 3L_18753678_SNP [dm6]	A	T	3.202e^-4	0.633	INTRON ftz-f1
2L	7555259	2L_7555259_SNP [dm3] 2L_7555259_SNP [dm6]	T	A	3.208e^-4	0.633	INTRON RapGAP1
3L	10508846	3L_10508846_SNP [dm3] 3L_10515746_SNP [dm6]	T	C	3.208e^-4	0.633	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	8973606	2L_8973606_SNP [dm3] 2L_8973606_SNP [dm6]	A	T	3.209e^-4	0.633	INTRON CG9541
3L	12432305	3L_12432305_SNP [dm3] 3L_12439205_SNP [dm6]	T	C	3.215e^-4	0.633	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13112768	3R_13112768_SNP [dm3] 3R_17287046_SNP [dm6]	T	C	3.215e^-4	0.633	UPSTREAM CR43490 EXON CR43489
2R	10676540	2R_10676540_SNP [dm3] 2R_14789035_SNP [dm6]	C	T	3.220e^-4	0.633	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14427308	3L_14427308_SNP [dm3] 3L_14434208_SNP [dm6]	A	T	3.221e^-4	0.633	INTRON bbg
3R	13112772	3R_13112772_SNP [dm3] 3R_17287050_SNP [dm6]	T	C	3.222e^-4	0.633	UPSTREAM CR43490 EXON CR43489
3L	5843252	3L_5843252_SNP [dm3] 3L_5850152_SNP [dm6]	T	A	3.224e^-4	0.633	INTERGENIC
2R	13191970	2R_13191970_SNP [dm3] 2R_17304465_SNP [dm6]	C	T	3.228e^-4	0.633	INTRON mbl
2R	15679008	2R_15679008_SNP [dm3] 2R_19791503_SNP [dm6]	C	T	3.229e^-4	0.633	INTERGENIC
3L	13146928	3L_13146928_SNP [dm3] 3L_13153828_SNP [dm6]	T	C	3.232e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
X	2186093	X_2186093_SNP [dm3] X_2292060_SNP [dm6]	C	T	3.257e^-4	0.636	INTRON CG2865	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14702852	2R_14702852_SNP [dm3] 2R_18815347_SNP [dm6]	G	C	3.261e^-4	0.636	UTR_5_PRIME CG15096 UPSTREAM CG15096 EXON CR43418
X	22115238	X_22115238_SNP [dm3] X_22713402_SNP [dm6]	A	T	3.263e^-4	0.636	INTRON CR44997	transposable element FlyBase
3R	26389161	3R_26389161_SNP [dm3] 3R_30563439_SNP [dm6]	G	C	3.264e^-4	0.636	UTR_5_PRIME tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2323002	3L_2323002_SNP [dm3] 3L_2323002_SNP [dm6]	A	C	3.279e^-4	0.638	INTRON MsR1
2R	13748987	2R_13748987_INS [dm3] 2R_17861482_INS [dm6]	A	AA	3.284e^-4	0.638	FRAME_SHIFT CG14490 UTR_3_PRIME thr DOWNSTREAM thr & 1 other	TF binding site mE1_TFBS_HSA
3R	9333657	3R_9333657_SNP [dm3] 3R_13507935_SNP [dm6]	G	C	3.290e^-4	0.638	INTERGENIC
X	22110686	X_22110686_SNP [dm3] X_22708850_SNP [dm6]	C	G	3.297e^-4	0.638	INTRON CR44997	transposable element FlyBase
2L	7561721	2L_7561721_SNP [dm3] 2L_7561721_SNP [dm6]	A	G	3.298e^-4	0.638	INTRON RapGAP1
3R	13438027	3R_13438027_SNP [dm3] 3R_17612305_SNP [dm6]	G	T	3.305e^-4	0.638	UPSTREAM Edg91 & 1 other INTERGENIC
X	4791535	X_4791535_SNP [dm3] X_4897502_SNP [dm6]	A	C	3.310e^-4	0.638	INTRON CG42594
2L	20618460	2L_20618460_DEL [dm3] 2L_20618460_DEL [dm6]	CCGGCACCCGGA...	C	3.313e^-4	0.638	UPSTREAM mir-288 INTRON CR44909 EXON mir-288
2L	9119950	2L_9119950_SNP [dm3] 2L_9119950_SNP [dm6]	A	G	3.325e^-4	0.638	EXON CR44617
2L	20656284	2L_20656284_SNP [dm3] 2L_20656284_SNP [dm6]	T	C	3.327e^-4	0.638	UPSTREAM CG2614 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	15658348	3L_15658348_SNP [dm3] 3L_15665248_SNP [dm6]	C	A	3.328e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13438055	3R_13438055_SNP [dm3] 3R_17612333_SNP [dm6]	G	A	3.329e^-4	0.638	UPSTREAM Edg91 & 1 other INTERGENIC
2R	6526039	2R_6526039_SNP [dm3] 2R_10638534_SNP [dm6]	C	T	3.331e^-4	0.638	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2L	8615993	2L_8615993_SNP [dm3] 2L_8615993_SNP [dm6]	G	A	3.333e^-4	0.638	INTRON Sema-1a
2R	17128465	2R_17128465_SNP [dm3] 2R_21240960_SNP [dm6]	T	A	3.346e^-4	0.638	INTRON ASPP
X	5152348	X_5152348_SNP [dm3] X_5258315_SNP [dm6]	A	G	3.358e^-4	0.638	INTERGENIC
2R	13635607	2R_13635607_SNP [dm3] 2R_17748102_SNP [dm6]	C	T	3.359e^-4	0.638	UPSTREAM CG10931 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2322999	3L_2322999_SNP [dm3] 3L_2322999_SNP [dm6]	T	C	3.360e^-4	0.638	INTRON MsR1
3L	18926889	3L_18926889_SNP [dm3] 3L_18933789_SNP [dm6]	T	G	3.361e^-4	0.638	INTRON CG32204
3R	14754641	3R_14754641_SNP [dm3] 3R_18928919_SNP [dm6]	A	G	3.361e^-4	0.638	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3986342	2L_3986342_SNP [dm3] 2L_3986342_SNP [dm6]	C	T	3.368e^-4	0.638	INTRON fred
2R	7314269	2R_7314269_SNP [dm3] 2R_11426764_SNP [dm6]	T	A	3.373e^-4	0.638	INTRON Drip
2L	15348728	2L_15348728_SNP [dm3] 2L_15348728_SNP [dm6]	T	A	3.374e^-4	0.638	INTERGENIC
3R	27456320	3R_27456320_SNP [dm3] 3R_31630598_SNP [dm6]	A	G	3.375e^-4	0.638	INTRON kek6
2L	16952841	2L_16952841_SNP [dm3] 2L_16952841_SNP [dm6]	T	G	3.375e^-4	0.638	INTERGENIC
2L	5711483	2L_5711483_SNP [dm3] 2L_5711483_SNP [dm6]	A	C	3.380e^-4	0.638	UPSTREAM CG7236 INTRON CG7236
3L	8064329	3L_8064329_SNP [dm3] 3L_8071229_SNP [dm6]	G	A	3.381e^-4	0.638	UTR_5_PRIME Ect4	TF binding site mE1_TFBS_HSA
3R	24061379	3R_24061379_SNP [dm3] 3R_28235657_SNP [dm6]	C	T	3.383e^-4	0.638	INTRON CG34354
3L	2894674	3L_2894674_SNP [dm3] 3L_2894674_SNP [dm6]	T	C	3.389e^-4	0.638	UPSTREAM Shab INTERGENIC
X	4733596	X_4733596_SNP [dm3] X_4839563_SNP [dm6]	G	A	3.390e^-4	0.638	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8503918	3L_8503918_SNP [dm3] 3L_8510818_SNP [dm6]	A	G	3.392e^-4	0.638	NON_SYNONYMOUS_CODING CG6745	TF binding site mE1_TFBS_sens
2L	12617270	2L_12617270_SNP [dm3] 2L_12617270_SNP [dm6]	C	A	3.396e^-4	0.638	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7841421	2R_7841421_SNP [dm3] 2R_11953916_SNP [dm6]	G	T	3.409e^-4	0.638	INTRON CG13188
2L	9120812	2L_9120812_SNP [dm3] 2L_9120812_SNP [dm6]	T	C	3.410e^-4	0.638	DOWNSTREAM CR44617 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8818529	3L_8818529_INS [dm3] 3L_8825429_INS [dm6]	A	ATACA	3.412e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	18051382	2R_18051382_SNP [dm3] 2R_22163877_SNP [dm6]	T	A	3.419e^-4	0.638	NON_SYNONYMOUS_CODING CG34206 INTRON a
2R	15833325	2R_15833325_SNP [dm3] 2R_19945820_SNP [dm6]	C	G	3.421e^-4	0.638	UTR_3_PRIME CG42691 UPSTREAM CG43195 & 1 other DOWNSTREAM CG42691
2L	18539890	2L_18539890_SNP [dm3] 2L_18539890_SNP [dm6]	G	T	3.430e^-4	0.638	INTRON Pde11

By genomic position
Variant impact
Gene name

Delta_Death.at.48h Experience 3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results