DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.431e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	6.5855	0.0372

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3530 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	10608749	2R_10608749_SNP [dm3] 2R_14721244_SNP [dm6]	C	G	1.841e^-10	3.453e^-4	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10705677	2R_10705677_SNP [dm3] 2R_14818172_SNP [dm6]	G	T	1.304e^-9	4.271e^-4	NON_SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10719564	2R_10719564_SNP [dm3] 2R_14832059_SNP [dm6]	G	A	1.304e^-9	4.271e^-4	UPSTREAM CG10205 INTERGENIC
2R	10715639	2R_10715639_SNP [dm3] 2R_14828134_SNP [dm6]	A	T	1.346e^-9	4.271e^-4	INTERGENIC
2R	10713301	2R_10713301_SNP [dm3] 2R_14825796_SNP [dm6]	T	G	1.442e^-9	4.271e^-4	INTERGENIC
2R	10608747	2R_10608747_SNP [dm3] 2R_14721242_SNP [dm6]	C	T	1.466e^-9	4.271e^-4	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10721948	2R_10721948_SNP [dm3] 2R_14834443_SNP [dm6]	C	A	1.786e^-9	4.271e^-4	DOWNSTREAM CG10205 INTERGENIC
2R	10700525	2R_10700525_SNP [dm3] 2R_14813020_SNP [dm6]	G	A	1.822e^-9	4.271e^-4	INTERGENIC	regulatory region REDfly_CRMs
2R	10749489	2R_10749489_SNP [dm3] 2R_14861984_SNP [dm6]	C	T	3.742e^-9	7.798e^-4	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10674472	2R_10674472_SNP [dm3] 2R_14786967_SNP [dm6]	A	G	3.552e^-8	0.006	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	10675354	2R_10675354_SNP [dm3] 2R_14787849_SNP [dm6]	C	A	3.552e^-8	0.006	INTRON kn	TF binding site BDTNP1_TFBS_da
2R	10616116	2R_10616116_SNP [dm3] 2R_14728611_SNP [dm6]	G	A	3.699e^-8	0.006	INTERGENIC
2R	10585509	2R_10585509_SNP [dm3] 2R_14698004_SNP [dm6]	G	T	4.256e^-8	0.006	INTRON mspo
2R	10676596	2R_10676596_SNP [dm3] 2R_14789091_SNP [dm6]	G	T	4.713e^-8	0.006	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10702960	2R_10702960_SNP [dm3] 2R_14815455_SNP [dm6]	A	C	4.903e^-8	0.006	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10721104	2R_10721104_SNP [dm3] 2R_14833599_SNP [dm6]	G	A	5.799e^-8	0.007	NON_SYNONYMOUS_CODING CG10205 UTR_3_PRIME CG10205
2R	10460322	2R_10460322_SNP [dm3] 2R_14572817_SNP [dm6]	C	A	7.734e^-8	0.009	SYNONYMOUS_CODING LamC INTRON ttv
2R	10701426	2R_10701426_SNP [dm3] 2R_14813921_SNP [dm6]	G	A	8.943e^-8	0.009	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10608696	2R_10608696_SNP [dm3] 2R_14721191_SNP [dm6]	G	A	9.409e^-8	0.009	INTERGENIC
2L	17054282	2L_17054282_SNP [dm3] 2L_17054282_SNP [dm6]	A	T	9.483e^-8	0.009	INTERGENIC
2R	12245315	2R_12245315_SNP [dm3] 2R_16357810_SNP [dm6]	G	A	1.037e^-7	0.009	DOWNSTREAM CR45322 EXON CR43416
2R	10704614	2R_10704614_SNP [dm3] 2R_14817109_SNP [dm6]	G	A	1.212e^-7	0.01	DOWNSTREAM CG10202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10621372	2R_10621372_SNP [dm3] 2R_14733867_SNP [dm6]	C	A	1.220e^-7	0.01	INTERGENIC
3L	14980603	3L_14980603_SNP [dm3] 3L_14987503_SNP [dm6]	C	A	1.370e^-7	0.011	UTR_5_PRIME mnd INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10294461	2R_10294461_SNP [dm3] 2R_14406956_SNP [dm6]	T	A	1.570e^-7	0.011	INTERGENIC
2R	10368189	2R_10368189_SNP [dm3] 2R_14480684_SNP [dm6]	G	C	1.584e^-7	0.011	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	3024694	3L_3024694_SNP [dm3] 3L_3024694_SNP [dm6]	G	A	1.956e^-7	0.014	SYNONYMOUS_CODING aly
2R	10688949	2R_10688949_SNP [dm3] 2R_14801444_SNP [dm6]	C	A	2.302e^-7	0.015	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10585511	2R_10585511_SNP [dm3] 2R_14698006_SNP [dm6]	T	A	2.635e^-7	0.017	INTRON mspo
2R	15861441	2R_15861441_SNP [dm3] 2R_19973936_SNP [dm6]	A	G	2.810e^-7	0.018	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8390046	2L_8390046_SNP [dm3] 2L_8390046_SNP [dm6]	G	A	3.056e^-7	0.018	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi
2L	8363433	2L_8363433_DEL [dm3] 2L_8363433_DEL [dm6]	CC	C	3.057e^-7	0.018	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	12370631	2R_12370631_SNP [dm3] 2R_16483126_SNP [dm6]	G	A	3.639e^-7	0.021	INTERGENIC
2R	10608610	2R_10608610_SNP [dm3] 2R_14721105_SNP [dm6]	C	G	4.001e^-7	0.022	INTERGENIC
2R	10585346	2R_10585346_SNP [dm3] 2R_14697841_SNP [dm6]	C	T	4.119e^-7	0.022	INTRON mspo
2R	10676540	2R_10676540_SNP [dm3] 2R_14789035_SNP [dm6]	C	T	4.820e^-7	0.025	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9304036	2L_9304036_SNP [dm3] 2L_9304036_SNP [dm6]	C	T	5.147e^-7	0.026	DOWNSTREAM CR42844 INTERGENIC
2L	8390049	2L_8390049_SNP [dm3] 2L_8390049_SNP [dm6]	C	T	5.502e^-7	0.027	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10676788	2R_10676788_SNP [dm3] 2R_14789283_SNP [dm6]	C	T	6.221e^-7	0.03	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	10688036	2R_10688036_SNP [dm3] 2R_14800531_SNP [dm6]	A	G	7.694e^-7	0.035	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	9261424	2L_9261424_SNP [dm3] 2L_9261424_SNP [dm6]	G	A	7.742e^-7	0.035	DOWNSTREAM CR45262 INTRON Ggamma30A
3L	12710782	3L_12710782_SNP [dm3] 3L_12717682_SNP [dm6]	G	A	9.010e^-7	0.04	INTERGENIC
2L	8389638	2L_8389638_SNP [dm3] 2L_8389638_SNP [dm6]	A	T	9.923e^-7	0.043	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2R	7475262	2R_7475262_SNP [dm3] 2R_11587757_SNP [dm6]	C	A	1.168e^-6	0.049	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	4376521	2L_4376521_SNP [dm3] 2L_4376521_SNP [dm6]	A	T	1.174e^-6	0.049	INTRON Traf4	TF binding site mE1_TFBS_cad
2R	15203387	2R_15203387_SNP [dm3] 2R_19315882_SNP [dm6]	T	C	1.316e^-6	0.053	INTRON Rgk1
2R	15863357	2R_15863357_SNP [dm3] 2R_19975852_SNP [dm6]	G	A	1.317e^-6	0.053	INTERGENIC
2R	7474501	2R_7474501_SNP [dm3] 2R_11586996_SNP [dm6]	G	A	1.405e^-6	0.055	SYNONYMOUS_CODING tou
2L	8390177	2L_8390177_SNP [dm3] 2L_8390177_SNP [dm6]	T	G	1.469e^-6	0.056	SYNONYMOUS_CODING CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9259902	2L_9259902_DEL [dm3] 2L_9259902_DEL [dm6]	CTCTTC	C	1.566e^-6	0.059	INTRON Ggamma30A
2L	3602964	2L_3602964_SNP [dm3] 2L_3602964_SNP [dm6]	G	A	1.606e^-6	0.059	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	12198042	2R_12198042_SNP [dm3] 2R_16310537_SNP [dm6]	C	T	1.717e^-6	0.062	INTRON Nox	TF binding site mE1_TFBS_chinmo
2L	17927212	2L_17927212_SNP [dm3] 2L_17927212_SNP [dm6]	T	A	1.806e^-6	0.063	INTERGENIC
3R	25642824	3R_25642824_SNP [dm3] 3R_29817102_SNP [dm6]	T	C	1.850e^-6	0.063	SYNONYMOUS_CODING CG7829 UPSTREAM Vps16B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7475070	2R_7475070_SNP [dm3] 2R_11587565_SNP [dm6]	A	T	1.893e^-6	0.063	SYNONYMOUS_CODING tou DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	9258652	2L_9258652_SNP [dm3] 2L_9258652_SNP [dm6]	A	T	1.948e^-6	0.063	INTRON Ggamma30A
2R	10608631	2R_10608631_SNP [dm3] 2R_14721126_SNP [dm6]	G	A	1.958e^-6	0.063	INTERGENIC
2L	4264252	2L_4264252_SNP [dm3] 2L_4264252_SNP [dm6]	C	A	1.993e^-6	0.063	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10549501	2R_10549501_SNP [dm3] 2R_14661996_SNP [dm6]	T	G	2.003e^-6	0.063	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9252708	2L_9252708_SNP [dm3] 2L_9252708_SNP [dm6]	G	A	2.050e^-6	0.063	SYNONYMOUS_CODING borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2358051	2L_2358051_SNP [dm3] 2L_2358051_SNP [dm6]	C	T	2.061e^-6	0.063	UTR_3_PRIME eys UPSTREAM CG9967
2R	10676777	2R_10676777_SNP [dm3] 2R_14789272_SNP [dm6]	C	T	2.135e^-6	0.064	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	9255723	2L_9255723_SNP [dm3] 2L_9255723_SNP [dm6]	T	C	2.171e^-6	0.064	UPSTREAM lectin-30A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	9262205	2L_9262205_SNP [dm3] 2L_9262205_SNP [dm6]	G	C	2.175e^-6	0.064	INTRON Ggamma30A EXON CR45262
2L	9254412	2L_9254412_SNP [dm3] 2L_9254412_SNP [dm6]	G	A	2.272e^-6	0.066	SYNONYMOUS_CODING lectin-30A
2R	10549497	2R_10549497_SNP [dm3] 2R_14661992_SNP [dm6]	T	G	2.336e^-6	0.066	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19906799	2L_19906799_SNP [dm3] 2L_19906799_SNP [dm6]	A	G	2.699e^-6	0.076	INTRON sick
2R	14053154	2R_14053154_SNP [dm3] 2R_18165649_SNP [dm6]	A	G	2.801e^-6	0.077	SYNONYMOUS_CODING Nup75 DOWNSTREAM CG10915
3L	10921255	3L_10921255_SNP [dm3] 3L_10928155_SNP [dm6]	T	C	2.958e^-6	0.08	INTERGENIC
2R	10508075	2R_10508075_SNP [dm3] 2R_14620570_SNP [dm6]	A	T	3.170e^-6	0.084	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16401064	2L_16401064_SNP [dm3] 2L_16401064_SNP [dm6]	A	G	3.263e^-6	0.084	INTRON CG5888
X	9063578	X_9063578_SNP [dm3] X_9169545_SNP [dm6]	C	T	3.291e^-6	0.084	SYNONYMOUS_CODING mei-P26	TF binding site mE1_TFBS_HSA
2R	18288806	2R_18288806_SNP [dm3] 2R_22401301_SNP [dm6]	A	C	3.293e^-6	0.084	INTRON babos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8390166	2L_8390166_SNP [dm3] 2L_8390166_SNP [dm6]	A	G	3.369e^-6	0.084	SYNONYMOUS_CODING CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10508071	2R_10508071_SNP [dm3] 2R_14620566_SNP [dm6]	G	T	3.376e^-6	0.084	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	8389562	2L_8389562_SNP [dm3] 2L_8389562_SNP [dm6]	A	T	3.483e^-6	0.086	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2L	8389640	2L_8389640_SNP [dm3] 2L_8389640_SNP [dm6]	T	G	3.660e^-6	0.088	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2L	6004062	2L_6004062_SNP [dm3] 2L_6004062_SNP [dm6]	T	G	3.685e^-6	0.088	SYNONYMOUS_CODING Gal UPSTREAM CR43866 DOWNSTREAM Tsp26A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13875980	X_13875980_SNP [dm3] X_13981947_SNP [dm6]	T	C	3.725e^-6	0.088	INTRON mamo
2R	13775901	2R_13775901_SNP [dm3] 2R_17888396_SNP [dm6]	G	A	3.799e^-6	0.089	SYNONYMOUS_CODING PPO1 INTRON Elk	TF binding site mE1_TFBS_cad
2L	17923262	2L_17923262_SNP [dm3] 2L_17923262_SNP [dm6]	G	C	4.015e^-6	0.093	INTERGENIC
2L	8998239	2L_8998239_SNP [dm3] 2L_8998239_SNP [dm6]	C	T	4.144e^-6	0.094	SYNONYMOUS_CODING CG18661 UPSTREAM alien & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3L	885475	3L_885475_SNP [dm3] 3L_885475_SNP [dm6]	T	C	4.194e^-6	0.094	INTRON CG32479
2R	10585596	2R_10585596_SNP [dm3] 2R_14698091_SNP [dm6]	A	T	4.198e^-6	0.094	INTRON mspo
2R	10366370	2R_10366370_SNP [dm3] 2R_14478865_SNP [dm6]	T	C	4.368e^-6	0.096	DOWNSTREAM CR44462 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9261448	2L_9261448_SNP [dm3] 2L_9261448_SNP [dm6]	T	A	4.571e^-6	0.1	DOWNSTREAM CR45262 INTRON Ggamma30A
3L	18228306	3L_18228306_SNP [dm3] 3L_18235206_SNP [dm6]	T	C	4.683e^-6	0.101	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10622250	2R_10622250_SNP [dm3] 2R_14734745_SNP [dm6]	A	T	4.746e^-6	0.101	INTERGENIC
2L	10870068	2L_10870068_SNP [dm3] 2L_10870068_SNP [dm6]	C	T	4.790e^-6	0.101	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10676796	2R_10676796_SNP [dm3] 2R_14789291_SNP [dm6]	A	T	4.824e^-6	0.101	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	10585592	2R_10585592_SNP [dm3] 2R_14698087_SNP [dm6]	T	A	4.943e^-6	0.102	INTRON mspo
2R	10700594	2R_10700594_SNP [dm3] 2R_14813089_SNP [dm6]	A	G	5.235e^-6	0.106	INTERGENIC
2R	11704581	2R_11704581_SNP [dm3] 2R_15817076_SNP [dm6]	A	G	5.287e^-6	0.106	UPSTREAM Zasp52 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11710313	2L_11710313_SNP [dm3] 2L_11710313_SNP [dm6]	G	T	5.294e^-6	0.106	INTERGENIC
2R	9631995	2R_9631995_DEL [dm3] 2R_13744490_DEL [dm6]	GT	G	5.656e^-6	0.112	INTRON fas
2R	14053124	2R_14053124_SNP [dm3] 2R_18165619_SNP [dm6]	T	G	5.724e^-6	0.112	SYNONYMOUS_CODING Nup75 DOWNSTREAM CG10915
3R	20663014	3R_20663014_SNP [dm3] 3R_24837292_SNP [dm6]	A	T	6.018e^-6	0.116	INTRON sosie
2R	10622258	2R_10622258_SNP [dm3] 2R_14734753_SNP [dm6]	T	C	6.087e^-6	0.117	INTERGENIC
2L	19913184	2L_19913184_SNP [dm3] 2L_19913184_SNP [dm6]	A	G	6.689e^-6	0.127	SYNONYMOUS_CODING Victoria UPSTREAM TotF INTRON sick
3R	20505746	3R_20505746_SNP [dm3] 3R_24680024_SNP [dm6]	A	G	6.867e^-6	0.129	INTRON slo
3L	1267484	3L_1267484_SNP [dm3] 3L_1267484_SNP [dm6]	A	G	7.020e^-6	0.13	INTRON CG9134
2R	7474782	2R_7474782_SNP [dm3] 2R_11587277_SNP [dm6]	G	T	7.208e^-6	0.132	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	9252592	2L_9252592_SNP [dm3] 2L_9252592_SNP [dm6]	C	G	7.258e^-6	0.132	INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10622249	2R_10622249_SNP [dm3] 2R_14734744_SNP [dm6]	C	A	7.482e^-6	0.135	INTERGENIC
2R	4969919	2R_4969919_SNP [dm3] 2R_9082414_SNP [dm6]	A	C	7.560e^-6	0.135	UTR_5_PRIME CNT1 DOWNSTREAM CG8083
2R	4969288	2R_4969288_SNP [dm3] 2R_9081783_SNP [dm6]	G	A	7.801e^-6	0.135	SYNONYMOUS_CODING CG8083 UPSTREAM CNT1
3L	21788513	3L_21788513_SNP [dm3] 3L_21795413_SNP [dm6]	G	A	7.856e^-6	0.135	INTERGENIC
2L	10869985	2L_10869985_SNP [dm3] 2L_10869985_SNP [dm6]	C	G	7.916e^-6	0.135	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9259372	2L_9259372_SNP [dm3] 2L_9259372_SNP [dm6]	C	A	8.005e^-6	0.135	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
2L	9198590	2L_9198590_SNP [dm3] 2L_9198590_SNP [dm6]	A	G	8.011e^-6	0.135	INTRON tai
2R	15436212	2R_15436212_SNP [dm3] 2R_19548707_SNP [dm6]	C	T	8.057e^-6	0.135	INTRON sm
2R	10441975	2R_10441975_SNP [dm3] 2R_14554470_SNP [dm6]	T	C	8.065e^-6	0.135	UPSTREAM CG43919 INTRON ttv
3L	12710777	3L_12710777_SNP [dm3] 3L_12717677_SNP [dm6]	G	T	8.134e^-6	0.135	INTERGENIC
2R	7474789	2R_7474789_SNP [dm3] 2R_11587284_SNP [dm6]	G	A	8.295e^-6	0.136	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	10612435	2R_10612435_DEL [dm3] 2R_14724930_DEL [dm6]	TACTTGACTAGTTTGTACAG...	GC	8.462e^-6	0.137	INTERGENIC
2L	9257288	2L_9257288_SNP [dm3] 2L_9257288_SNP [dm6]	C	T	8.495e^-6	0.137	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	8389560	2L_8389560_SNP [dm3] 2L_8389560_SNP [dm6]	T	G	8.634e^-6	0.138	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2R	10612541	2R_10612541_SNP [dm3] 2R_14725036_SNP [dm6]	G	A	8.907e^-6	0.142	INTERGENIC
2R	10727458	2R_10727458_SNP [dm3] 2R_14839953_SNP [dm6]	T	C	9.090e^-6	0.143	INTERGENIC
2R	10711040	2R_10711040_SNP [dm3] 2R_14823535_SNP [dm6]	G	A	9.217e^-6	0.143	DOWNSTREAM CR45329 INTERGENIC
3L	5142503	3L_5142503_SNP [dm3] 3L_5149403_SNP [dm6]	A	C	9.234e^-6	0.143	NON_SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen
2R	7475118	2R_7475118_SNP [dm3] 2R_11587613_SNP [dm6]	G	T	9.420e^-6	0.145	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	9259041	2L_9259041_SNP [dm3] 2L_9259041_SNP [dm6]	T	A	9.740e^-6	0.149	INTRON Ggamma30A
X	13265926	X_13265926_SNP [dm3] X_13371893_SNP [dm6]	C	T	9.909e^-6	0.15	INTRON CG1640	TF binding site BDTNP1_TFBS_dl
3L	14852474	3L_14852474_INS [dm3] 3L_14859374_INS [dm6]	A	ATTAAGCTTAAGACGTTCCT...	1.027e^-5	0.154	INTRON CG17839
2R	10612529	2R_10612529_SNP [dm3] 2R_14725024_SNP [dm6]	T	C	1.046e^-5	0.156	INTERGENIC
2L	5737537	2L_5737537_SNP [dm3] 2L_5737537_SNP [dm6]	T	G	1.063e^-5	0.157	INTRON CG11030 & 1 other
2L	9259419	2L_9259419_SNP [dm3] 2L_9259419_SNP [dm6]	C	G	1.085e^-5	0.159	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
2R	13509258	2R_13509258_SNP [dm3] 2R_17621753_SNP [dm6]	T	C	1.098e^-5	0.159	INTRON CG10936
2R	14712384	2R_14712384_SNP [dm3] 2R_18824879_SNP [dm6]	T	C	1.104e^-5	0.159	INTRON CG15097	TF binding site mE1_TFBS_chinmo
2R	11613733	2R_11613733_SNP [dm3] 2R_15726228_SNP [dm6]	G	C	1.131e^-5	0.16	INTERGENIC
2R	10612175	2R_10612175_SNP [dm3] 2R_14724670_SNP [dm6]	A	G	1.136e^-5	0.16	INTERGENIC
X	17201842	X_17201842_SNP [dm3] X_17307809_SNP [dm6]	C	T	1.148e^-5	0.16	INTERGENIC
2R	19363263	2R_19363263_SNP [dm3] 2R_23475740_SNP [dm6]	T	C	1.151e^-5	0.16	UTR_3_PRIME CG13557 UPSTREAM CR43792 INTRON CG43795
2R	12620596	2R_12620596_SNP [dm3] 2R_16733091_SNP [dm6]	T	A	1.173e^-5	0.16	UPSTREAM CG30463 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19320516	2L_19320516_SNP [dm3] 2L_19320516_SNP [dm6]	T	C	1.176e^-5	0.16	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	25801715	3R_25801715_SNP [dm3] 3R_29975993_SNP [dm6]	A	G	1.181e^-5	0.16	INTERGENIC
2L	9453354	2L_9453354_SNP [dm3] 2L_9453354_SNP [dm6]	A	G	1.195e^-5	0.16	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17673330	X_17673330_SNP [dm3] X_17779297_SNP [dm6]	C	A	1.209e^-5	0.16	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	6091242	X_6091242_SNP [dm3] X_6197209_SNP [dm6]	T	C	1.212e^-5	0.16	SYNONYMOUS_CODING CG32751 UPSTREAM CG32750
3R	12874837	3R_12874837_SNP [dm3] 3R_17049115_SNP [dm6]	T	G	1.230e^-5	0.16	DOWNSTREAM Patr-1 INTERGENIC
2R	19363297	2R_19363297_SNP [dm3] 2R_23475774_SNP [dm6]	A	G	1.237e^-5	0.16	UTR_3_PRIME CG13557 UPSTREAM CR43792 INTRON CG43795
2R	10585662	2R_10585662_SNP [dm3] 2R_14698157_SNP [dm6]	A	C	1.241e^-5	0.16	INTRON mspo
2L	9262563	2L_9262563_SNP [dm3] 2L_9262563_SNP [dm6]	A	G	1.256e^-5	0.16	INTRON Ggamma30A EXON CR45262
X	9986149	X_9986149_SNP [dm3] X_10092116_SNP [dm6]	C	T	1.265e^-5	0.16	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10154275	2R_10154275_SNP [dm3] 2R_14266770_SNP [dm6]	A	G	1.267e^-5	0.16	INTRON CG8547
3R	8441601	3R_8441601_SNP [dm3] 3R_12615879_SNP [dm6]	G	A	1.269e^-5	0.16	INTERGENIC
2L	9621407	2L_9621407_SNP [dm3] 2L_9621407_SNP [dm6]	C	T	1.270e^-5	0.16	SYNONYMOUS_CODING GlcAT-S
X	9063641	X_9063641_SNP [dm3] X_9169608_SNP [dm6]	T	C	1.273e^-5	0.16	SYNONYMOUS_CODING mei-P26	TF binding site mE1_TFBS_HSA
3R	25801733	3R_25801733_SNP [dm3] 3R_29976011_SNP [dm6]	C	T	1.316e^-5	0.163	INTERGENIC
2R	10508081	2R_10508081_SNP [dm3] 2R_14620576_SNP [dm6]	C	T	1.319e^-5	0.163	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10154268	2R_10154268_SNP [dm3] 2R_14266763_SNP [dm6]	T	C	1.325e^-5	0.163	INTRON CG8547
2R	10188073	2R_10188073_SNP [dm3] 2R_14300568_SNP [dm6]	C	A	1.330e^-5	0.163	NON_SYNONYMOUS_CODING tej DOWNSTREAM Ih
2L	11729231	2L_11729231_SNP [dm3] 2L_11729231_SNP [dm6]	T	C	1.385e^-5	0.169	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8244832	3L_8244832_SNP [dm3] 3L_8251732_SNP [dm6]	A	G	1.404e^-5	0.17	INTRON Dscam4
2R	10443407	2R_10443407_SNP [dm3] 2R_14555902_SNP [dm6]	T	C	1.420e^-5	0.171	INTRON ttv
2R	10453850	2R_10453850_SNP [dm3] 2R_14566345_SNP [dm6]	T	C	1.448e^-5	0.173	INTRON ttv
2L	9120812	2L_9120812_SNP [dm3] 2L_9120812_SNP [dm6]	T	C	1.481e^-5	0.176	DOWNSTREAM CR44617 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14010795	2R_14010795_SNP [dm3] 2R_18123290_SNP [dm6]	G	A	1.519e^-5	0.179	INTRON stau	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	8034210	2L_8034210_SNP [dm3] 2L_8034210_SNP [dm6]	G	T	1.534e^-5	0.18	INTRON CG7367 & 1 other
3L	20135280	3L_20135280_SNP [dm3] 3L_20142180_SNP [dm6]	G	A	1.568e^-5	0.182	INTERGENIC
3R	25223305	3R_25223305_SNP [dm3] 3R_29397583_SNP [dm6]	G	A	1.577e^-5	0.182	INTRON Ptp99A
3L	18746778	3L_18746778_SNP [dm3] 3L_18753678_SNP [dm6]	A	T	1.582e^-5	0.182	INTRON ftz-f1
2R	10622212	2R_10622212_SNP [dm3] 2R_14734707_SNP [dm6]	G	A	1.600e^-5	0.182	INTERGENIC
2L	12200215	2L_12200215_SNP [dm3] 2L_12200215_SNP [dm6]	T	C	1.615e^-5	0.182	INTRON aret
2L	9453312	2L_9453312_SNP [dm3] 2L_9453312_SNP [dm6]	G	A	1.617e^-5	0.182	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2355935	2L_2355935_DEL [dm3] 2L_2355935_DEL [dm6]	ATGAAGA	A	1.625e^-5	0.182	INTRON CG9967 & 1 other
3L	14852491	3L_14852491_SNP [dm3] 3L_14859391_SNP [dm6]	C	A	1.631e^-5	0.182	INTRON CG17839
2R	3373740	2R_3373740_SNP [dm3] 2R_7486235_SNP [dm6]	G	A	1.670e^-5	0.184	UTR_5_PRIME wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9119950	2L_9119950_SNP [dm3] 2L_9119950_SNP [dm6]	A	G	1.672e^-5	0.184	EXON CR44617
3L	14156348	3L_14156348_SNP [dm3] 3L_14163248_SNP [dm6]	C	A	1.673e^-5	0.184	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	9440069	2L_9440069_SNP [dm3] 2L_9440069_SNP [dm6]	T	C	1.714e^-5	0.186	NON_SYNONYMOUS_CODING CG33723 INTRON numb
2R	10622222	2R_10622222_SNP [dm3] 2R_14734717_SNP [dm6]	C	T	1.714e^-5	0.186	INTERGENIC
2R	8730976	2R_8730976_SNP [dm3] 2R_12843471_SNP [dm6]	G	A	1.762e^-5	0.19	SYNONYMOUS_CODING Or49b UPSTREAM Cyp9h1	TF binding site BDTNP1_TFBS_twi
2R	7475985	2R_7475985_SNP [dm3] 2R_11588480_SNP [dm6]	G	T	1.797e^-5	0.19	SYNONYMOUS_CODING tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad
2R	17775940	2R_17775940_SNP [dm3] 2R_21888435_SNP [dm6]	G	A	1.806e^-5	0.19	INTRON Fili
3L	14852479	3L_14852479_SNP [dm3] 3L_14859379_SNP [dm6]	C	T	1.820e^-5	0.19	INTRON CG17839
3R	15628567	3R_15628567_SNP [dm3] 3R_19802845_SNP [dm6]	A	G	1.828e^-5	0.19	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12972020	2R_12972020_SNP [dm3] 2R_17084515_SNP [dm6]	G	T	1.829e^-5	0.19	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19920060	2L_19920060_SNP [dm3] 2L_19920060_SNP [dm6]	A	G	1.838e^-5	0.19	INTRON sick EXON CR43828
2L	9120390	2L_9120390_SNP [dm3] 2L_9120390_SNP [dm6]	A	C	1.838e^-5	0.19	DOWNSTREAM CR44617 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	10444580	2R_10444580_SNP [dm3] 2R_14557075_SNP [dm6]	T	A	1.845e^-5	0.19	INTRON ttv
3L	1453394	3L_1453394_MNP [dm3] 3L_1453394_MNP [dm6]	GGG	AAA	1.852e^-5	0.19	INTRON Ptp61F
2R	10372795	2R_10372795_SNP [dm3] 2R_14485290_SNP [dm6]	A	C	1.860e^-5	0.19	INTRON L	TF binding site mE1_TFBS_cad
2R	12278560	2R_12278560_SNP [dm3] 2R_16391055_SNP [dm6]	A	G	1.872e^-5	0.19	INTRON Sema-2b
X	7511536	X_7511536_SNP [dm3] X_7617503_SNP [dm6]	T	C	1.880e^-5	0.19	INTRON ct	TF binding site BDTNP1_TFBS_z
X	4222895	X_4222895_SNP [dm3] X_4328862_SNP [dm6]	C	T	1.909e^-5	0.191	INTRON norpA & 1 other	TF binding site BDTNP1_TFBS_twi
2R	13717995	2R_13717995_INS [dm3] 2R_17830490_INS [dm6]	A	AA	1.930e^-5	0.193	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd
2L	9303748	2L_9303748_INS [dm3] 2L_9303748_INS [dm6]	G	GTCGTGGCAATG...	1.958e^-5	0.194	DOWNSTREAM CR42844 INTERGENIC
2R	15864853	2R_15864853_SNP [dm3] 2R_19977348_SNP [dm6]	G	C	1.973e^-5	0.194	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18051252	2R_18051252_SNP [dm3] 2R_22163747_SNP [dm6]	G	T	1.982e^-5	0.194	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
2L	9253529	2L_9253529_SNP [dm3] 2L_9253529_SNP [dm6]	C	A	1.986e^-5	0.194	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10700592	2R_10700592_SNP [dm3] 2R_14813087_SNP [dm6]	G	A	2.013e^-5	0.195	INTERGENIC
X	15653110	X_15653110_SNP [dm3] X_15759077_SNP [dm6]	A	G	2.029e^-5	0.195	INTRON Graf	TF binding site BDTNP1_TFBS_twi
2R	10376657	2R_10376657_SNP [dm3] 2R_14489152_SNP [dm6]	C	T	2.055e^-5	0.195	INTRON L
2R	11049033	2R_11049033_SNP [dm3] 2R_15161528_SNP [dm6]	C	A	2.060e^-5	0.195	INTRON igl
2L	8390546	2L_8390546_SNP [dm3] 2L_8390546_SNP [dm6]	T	C	2.069e^-5	0.195	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9252480	2L_9252480_SNP [dm3] 2L_9252480_SNP [dm6]	A	G	2.070e^-5	0.195	INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9252499	2L_9252499_SNP [dm3] 2L_9252499_SNP [dm6]	A	G	2.070e^-5	0.195	INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4265581	2L_4265581_INS [dm3] 2L_4265581_INS [dm6]	A	AACTATG	2.081e^-5	0.195	INTERGENIC
2L	17054078	2L_17054078_SNP [dm3] 2L_17054078_SNP [dm6]	T	G	2.112e^-5	0.197	INTERGENIC
3L	1452135	3L_1452135_SNP [dm3] 3L_1452135_SNP [dm6]	C	A	2.143e^-5	0.197	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2685245	2L_2685245_SNP [dm3] 2L_2685245_SNP [dm6]	T	C	2.144e^-5	0.197	INTRON CG31690
3L	18120031	3L_18120031_SNP [dm3] 3L_18126931_SNP [dm6]	G	A	2.144e^-5	0.197	INTERGENIC
2L	9121247	2L_9121247_SNP [dm3] 2L_9121247_SNP [dm6]	T	C	2.186e^-5	0.197	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	7474864	2R_7474864_SNP [dm3] 2R_11587359_SNP [dm6]	C	T	2.188e^-5	0.197	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	10548469	2R_10548469_SNP [dm3] 2R_14660964_SNP [dm6]	G	A	2.189e^-5	0.197	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14702852	2R_14702852_SNP [dm3] 2R_18815347_SNP [dm6]	G	C	2.192e^-5	0.197	UTR_5_PRIME CG15096 UPSTREAM CG15096 EXON CR43418
2L	9253428	2L_9253428_INS [dm3] 2L_9253428_INS [dm6]	G	CACGACATAAAAACAAAAA...	2.225e^-5	0.197	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	7476157	2R_7476157_SNP [dm3] 2R_11588652_SNP [dm6]	A	T	2.247e^-5	0.197	UPSTREAM snoRNA:Psi28S-1936 INTRON tou	TF binding site mE1_TFBS_cad
2L	995434	2L_995434_SNP [dm3] 2L_995434_SNP [dm6]	A	G	2.248e^-5	0.197	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	995436	2L_995436_SNP [dm3] 2L_995436_SNP [dm6]	C	T	2.248e^-5	0.197	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10443114	2R_10443114_SNP [dm3] 2R_14555609_SNP [dm6]	T	C	2.270e^-5	0.197	INTRON ttv
2L	9253430	2L_9253430_SNP [dm3] 2L_9253430_SNP [dm6]	T	A	2.274e^-5	0.197	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	9251405	2L_9251405_SNP [dm3] 2L_9251405_SNP [dm6]	T	C	2.276e^-5	0.197	UPSTREAM aust DOWNSTREAM borr EXON CR43734
2R	6064333	2R_6064333_SNP [dm3] 2R_10176828_SNP [dm6]	G	A	2.276e^-5	0.197	INTRON KCNQ
2L	19907508	2L_19907508_SNP [dm3] 2L_19907508_SNP [dm6]	A	C	2.285e^-5	0.197	INTRON sick
X	21283475	X_21283475_SNP [dm3] X_21412448_SNP [dm6]	A	C	2.291e^-5	0.197	INTERGENIC
2L	9304519	2L_9304519_SNP [dm3] 2L_9304519_SNP [dm6]	G	A	2.325e^-5	0.198	EXON CR42844
2L	3895293	2L_3895293_SNP [dm3] 2L_3895293_SNP [dm6]	T	A	2.340e^-5	0.198	INTRON capu
2R	10513562	2R_10513562_SNP [dm3] 2R_14626057_SNP [dm6]	T	C	2.368e^-5	0.198	INTERGENIC
2R	7476182	2R_7476182_SNP [dm3] 2R_11588677_SNP [dm6]	T	A	2.372e^-5	0.198	UPSTREAM snoRNA:Psi28S-1936 INTRON tou	TF binding site mE1_TFBS_cad
2L	3895172	2L_3895172_SNP [dm3] 2L_3895172_SNP [dm6]	T	A	2.390e^-5	0.198	INTRON capu	TF binding site mE1_TFBS_kn
2L	3895182	2L_3895182_SNP [dm3] 2L_3895182_SNP [dm6]	A	G	2.390e^-5	0.198	INTRON capu	TF binding site mE1_TFBS_kn
2R	10516851	2R_10516851_SNP [dm3] 2R_14629346_SNP [dm6]	T	C	2.391e^-5	0.198	UPSTREAM CG10131 INTERGENIC
X	7331771	X_7331771_SNP [dm3] X_7437738_SNP [dm6]	C	G	2.391e^-5	0.198	INTERGENIC
2R	5968193	2R_5968193_SNP [dm3] 2R_10080688_SNP [dm6]	T	C	2.406e^-5	0.199	DOWNSTREAM scaRNA:MeU1b-A234 INTRON egr
2L	3895178	2L_3895178_MNP [dm3] 2L_3895178_MNP [dm6]	TTA	AAT	2.435e^-5	0.2	INTRON capu	TF binding site mE1_TFBS_kn
2L	19908911	2L_19908911_SNP [dm3] 2L_19908911_SNP [dm6]	G	A	2.444e^-5	0.2	INTRON sick	TF binding site mE1_TFBS_chinmo
2L	9346349	2L_9346349_SNP [dm3] 2L_9346349_SNP [dm6]	A	G	2.473e^-5	0.202	INTERGENIC
2R	11072270	2R_11072270_INS [dm3] 2R_15184765_INS [dm6]	G	GCAGACAGATG...	2.494e^-5	0.202	UPSTREAM CG43068 INTRON igl
2L	8390736	2L_8390736_SNP [dm3] 2L_8390736_SNP [dm6]	C	T	2.572e^-5	0.207	SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8244833	3L_8244833_SNP [dm3] 3L_8251733_SNP [dm6]	A	T	2.575e^-5	0.207	INTRON Dscam4
3L	19770694	3L_19770694_SNP [dm3] 3L_19777594_SNP [dm6]	A	T	2.615e^-5	0.21	INTRON CG42637 & 1 other
2R	18051253	2R_18051253_INS [dm3] 2R_22163748_INS [dm6]	C	CAAAAT	2.642e^-5	0.21	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
X	7331220	X_7331220_SNP [dm3] X_7437187_SNP [dm6]	C	A	2.648e^-5	0.21	INTERGENIC
2L	17944451	2L_17944451_SNP [dm3] 2L_17944451_SNP [dm6]	G	T	2.660e^-5	0.21	INTERGENIC
2L	9258668	2L_9258668_SNP [dm3] 2L_9258668_SNP [dm6]	C	T	2.669e^-5	0.21	INTRON Ggamma30A
3R	10199329	3R_10199329_SNP [dm3] 3R_14373607_SNP [dm6]	A	C	2.688e^-5	0.21	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7976864	2R_7976864_INS [dm3] 2R_12089359_INS [dm6]	A	ACGTG	2.689e^-5	0.21	UTR_3_PRIME jeb
2R	16285790	2R_16285790_SNP [dm3] 2R_20398285_SNP [dm6]	C	A	2.703e^-5	0.21	INTERGENIC
X	5694022	X_5694022_SNP [dm3] X_5799989_SNP [dm6]	C	T	2.775e^-5	0.215	INTERGENIC
2R	8353166	2R_8353166_SNP [dm3] 2R_12465661_SNP [dm6]	T	A	2.800e^-5	0.216	DOWNSTREAM dgt5 & 1 other INTERGENIC
2R	11608247	2R_11608247_SNP [dm3] 2R_15720742_SNP [dm6]	T	A	2.827e^-5	0.217	INTERGENIC
2R	18051256	2R_18051256_INS [dm3] 2R_22163751_INS [dm6]	A	ATA	2.849e^-5	0.217	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
3R	7853526	3R_7853526_SNP [dm3] 3R_12027804_SNP [dm6]	G	A	2.863e^-5	0.217	UTR_3_PRIME CG31358 DOWNSTREAM CG31358 & 2 others
2R	10594655	2R_10594655_SNP [dm3] 2R_14707150_SNP [dm6]	C	T	2.864e^-5	0.217	INTRON mspo
2R	7464443	2R_7464443_SNP [dm3] 2R_11576938_SNP [dm6]	G	A	2.873e^-5	0.217	DOWNSTREAM tou INTERGENIC
X	14228810	X_14228810_SNP [dm3] X_14334777_SNP [dm6]	G	C	2.875e^-5	0.217	INTRON dpr8
2R	10151602	2R_10151602_SNP [dm3] 2R_14264097_SNP [dm6]	C	T	2.891e^-5	0.217	INTRON CG8547	TF binding site mE1_TFBS_cad
3L	21034266	3L_21034266_SNP [dm3] 3L_21041166_SNP [dm6]	T	C	2.911e^-5	0.217	INTRON siz	TF binding site mE1_TFBS_cad
2R	11072288	2R_11072288_SNP [dm3] 2R_15184783_SNP [dm6]	G	C	2.915e^-5	0.217	UPSTREAM CG43068 INTRON igl
3L	3302743	3L_3302743_INS [dm3] 3L_3302743_INS [dm6]	CCC	AATGGAAGGGA...	2.968e^-5	0.22	UPSTREAM CG14968 & 1 other INTRON CG14968
2L	5737536	2L_5737536_SNP [dm3] 2L_5737536_SNP [dm6]	G	T	2.986e^-5	0.22	INTRON CG11030 & 1 other
2L	14460134	2L_14460134_SNP [dm3] 2L_14460134_SNP [dm6]	T	A	2.998e^-5	0.22	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9453225	2L_9453225_SNP [dm3] 2L_9453225_SNP [dm6]	C	T	3.023e^-5	0.22	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8918212	2R_8918212_SNP [dm3] 2R_13030707_SNP [dm6]	A	T	3.025e^-5	0.22	INTERGENIC	TF binding site mE1_TFBS_sens
2R	10534606	2R_10534606_SNP [dm3] 2R_14647101_SNP [dm6]	G	A	3.035e^-5	0.22	DOWNSTREAM CG10139 INTERGENIC
2L	9123538	2L_9123538_SNP [dm3] 2L_9123538_SNP [dm6]	G	A	3.046e^-5	0.22	UPSTREAM CR44615 INTERGENIC
2L	2685239	2L_2685239_SNP [dm3] 2L_2685239_SNP [dm6]	A	C	3.051e^-5	0.22	INTRON CG31690
2R	17775943	2R_17775943_SNP [dm3] 2R_21888438_SNP [dm6]	A	T	3.065e^-5	0.22	INTRON Fili
2R	11973788	2R_11973788_SNP [dm3] 2R_16086283_SNP [dm6]	A	G	3.163e^-5	0.226	NON_SYNONYMOUS_CODING Dg INTRON Dg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9253421	2L_9253421_MNP [dm3] 2L_9253421_MNP [dm6]	CCC	GAA	3.180e^-5	0.226	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	9356080	2R_9356080_SNP [dm3] 2R_13468575_SNP [dm6]	A	C	3.187e^-5	0.226	INTRON arr	TF binding site mE1_TFBS_chinmo
2R	13265471	2R_13265471_SNP [dm3] 2R_17377966_SNP [dm6]	C	A	3.199e^-5	0.226	UTR_3_PRIME mbl	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	17088640	2L_17088640_SNP [dm3] 2L_17088640_SNP [dm6]	G	A	3.225e^-5	0.227	UTR_3_PRIME CG12620
2L	12200695	2L_12200695_SNP [dm3] 2L_12200695_SNP [dm6]	G	T	3.234e^-5	0.227	UPSTREAM aret INTRON aret
2L	4231695	2L_4231695_SNP [dm3] 2L_4231695_SNP [dm6]	C	T	3.285e^-5	0.228	INTERGENIC
2L	6012997	2L_6012997_SNP [dm3] 2L_6012997_SNP [dm6]	T	A	3.299e^-5	0.228	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	10763630	2R_10763630_SNP [dm3] 2R_14876125_SNP [dm6]	G	C	3.312e^-5	0.228	NON_SYNONYMOUS_CODING Cyp6a23 DOWNSTREAM Cyp6a17
3L	4378259	3L_4378259_SNP [dm3] 3L_4378259_SNP [dm6]	G	A	3.317e^-5	0.228	UPSTREAM CR44360 INTRON DopEcR
2L	17924068	2L_17924068_SNP [dm3] 2L_17924068_SNP [dm6]	A	C	3.321e^-5	0.228	INTERGENIC
3L	18147174	3L_18147174_SNP [dm3] 3L_18154074_SNP [dm6]	C	T	3.335e^-5	0.228	DOWNSTREAM CG7330 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7807284	X_7807284_SNP [dm3] X_7913251_SNP [dm6]	A	T	3.344e^-5	0.228	INTRON snz
X	17208097	X_17208097_SNP [dm3] X_17314064_SNP [dm6]	A	T	3.349e^-5	0.228	UPSTREAM B-H2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	10578704	2R_10578704_SNP [dm3] 2R_14691199_SNP [dm6]	T	A	3.364e^-5	0.229	INTRON mspo
2R	13130245	2R_13130245_SNP [dm3] 2R_17242740_SNP [dm6]	C	A	3.393e^-5	0.23	INTRON mbl
3L	3024850	3L_3024850_SNP [dm3] 3L_3024850_SNP [dm6]	C	T	3.422e^-5	0.231	SYNONYMOUS_CODING aly
3L	19771874	3L_19771874_SNP [dm3] 3L_19778774_SNP [dm6]	C	A	3.439e^-5	0.231	INTRON CG42637 & 1 other
2R	9217407	2R_9217407_SNP [dm3] 2R_13329902_SNP [dm6]	C	T	3.488e^-5	0.233	UPSTREAM mir-184 EXON CR44206
2R	5968689	2R_5968689_SNP [dm3] 2R_10081184_SNP [dm6]	C	T	3.518e^-5	0.233	UPSTREAM scaRNA:MeU1b-A234 INTRON egr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	19653100	3L_19653100_SNP [dm3] 3L_19660000_SNP [dm6]	G	T	3.520e^-5	0.233	INTRON tey
2R	19358952	2R_19358952_SNP [dm3] 2R_23471429_SNP [dm6]	G	C	3.529e^-5	0.233	SYNONYMOUS_CODING Or59b DOWNSTREAM Or59c INTRON CG43795
2R	17775930	2R_17775930_SNP [dm3] 2R_21888425_SNP [dm6]	G	C	3.531e^-5	0.233	INTRON Fili
2R	3372773	2R_3372773_SNP [dm3] 2R_7485268_SNP [dm6]	A	G	3.534e^-5	0.233	SYNONYMOUS_CODING wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10788315	2R_10788315_SNP [dm3] 2R_14900810_SNP [dm6]	G	A	3.570e^-5	0.233	NON_SYNONYMOUS_CODING Cyp317a1 DOWNSTREAM CG10249	TF binding site mE1_TFBS_sens
X	4524977	X_4524977_SNP [dm3] X_4630944_SNP [dm6]	G	T	3.579e^-5	0.233	UPSTREAM CG12184 DOWNSTREAM CG12179 INTERGENIC
2L	9263647	2L_9263647_SNP [dm3] 2L_9263647_SNP [dm6]	G	A	3.584e^-5	0.233	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_inv
X	21283482	X_21283482_SNP [dm3] X_21412455_SNP [dm6]	T	C	3.639e^-5	0.235	INTERGENIC
3R	25057222	3R_25057222_SNP [dm3] 3R_29231500_SNP [dm6]	G	A	3.644e^-5	0.235	NON_SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14706884	2R_14706884_SNP [dm3] 2R_18819379_SNP [dm6]	T	G	3.645e^-5	0.235	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8833701	2R_8833701_SNP [dm3] 2R_12946196_SNP [dm6]	G	C	3.668e^-5	0.236	UTR_5_PRIME Mdr49	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3512063	2L_3512063_SNP [dm3] 2L_3512063_SNP [dm6]	C	G	3.699e^-5	0.236	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	18282518	2L_18282518_SNP [dm3] 2L_18282518_SNP [dm6]	A	T	3.711e^-5	0.236	INTERGENIC
2L	17923288	2L_17923288_SNP [dm3] 2L_17923288_SNP [dm6]	T	A	3.719e^-5	0.236	INTERGENIC
3L	10216813	3L_10216813_DEL [dm3] 3L_10223713_DEL [dm6]	GTAAGCTCAG	G	3.725e^-5	0.236	UPSTREAM scramb1 INTRON scramb1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1452248	3L_1452248_SNP [dm3] 3L_1452248_SNP [dm6]	T	A	3.750e^-5	0.237	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10153923	2R_10153923_INS [dm3] 2R_14266418_INS [dm6]	A	AATCG	3.798e^-5	0.238	INTRON CG8547
2R	16322573	2R_16322573_SNP [dm3] 2R_20435068_SNP [dm6]	A	T	3.798e^-5	0.238	INTRON CG12484
2L	9259491	2L_9259491_SNP [dm3] 2L_9259491_SNP [dm6]	G	C	3.833e^-5	0.24	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
2R	13324067	2R_13324067_SNP [dm3] 2R_17436562_SNP [dm6]	T	C	3.851e^-5	0.24	INTRON EDTP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10711112	2R_10711112_SNP [dm3] 2R_14823607_SNP [dm6]	C	A	3.872e^-5	0.24	EXON CR45329
3L	3302748	3L_3302748_SNP [dm3] 3L_3302748_SNP [dm6]	C	A	3.882e^-5	0.24	UPSTREAM CG14968 & 1 other INTRON CG14968
X	21054778	X_21054778_SNP [dm3] X_21183751_SNP [dm6]	T	C	3.901e^-5	0.241	INTERGENIC
2L	1744420	2L_1744420_SNP [dm3] 2L_1744420_SNP [dm6]	T	C	3.961e^-5	0.242	INTRON CG17646
3R	23490473	3R_23490473_SNP [dm3] 3R_27664751_SNP [dm6]	C	T	3.965e^-5	0.242	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
2L	9121570	2L_9121570_SNP [dm3] 2L_9121570_SNP [dm6]	T	A	3.967e^-5	0.242	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4511520	2R_4511520_SNP [dm3] 2R_8624015_SNP [dm6]	T	G	4.018e^-5	0.244	UTR_3_PRIME Cirl
3L	19323490	3L_19323490_SNP [dm3] 3L_19330390_SNP [dm6]	A	T	4.039e^-5	0.244	INTRON pip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9200031	2L_9200031_DEL [dm3] 2L_9200031_DEL [dm6]	AT	A	4.047e^-5	0.244	INTRON tai
3L	4378226	3L_4378226_SNP [dm3] 3L_4378226_SNP [dm6]	C	T	4.059e^-5	0.244	UPSTREAM CR44360 INTRON DopEcR
2R	17185532	2R_17185532_SNP [dm3] 2R_21298027_SNP [dm6]	A	T	4.068e^-5	0.244	UTR_5_PRIME CG42672 INTRON CG42672 EXON CR44724
2R	9631997	2R_9631997_SNP [dm3] 2R_13744492_SNP [dm6]	T	G	4.070e^-5	0.244	INTRON fas
2L	2721707	2L_2721707_SNP [dm3] 2L_2721707_SNP [dm6]	C	T	4.090e^-5	0.244	INTERGENIC
2R	10578677	2R_10578677_SNP [dm3] 2R_14691172_SNP [dm6]	G	A	4.119e^-5	0.245	INTRON mspo
X	7807594	X_7807594_SNP [dm3] X_7913561_SNP [dm6]	G	A	4.130e^-5	0.245	SYNONYMOUS_CODING snz
3L	1604325	3L_1604325_SNP [dm3] 3L_1604325_SNP [dm6]	A	C	4.176e^-5	0.247	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3R	9276058	3R_9276058_SNP [dm3] 3R_13450336_SNP [dm6]	G	A	4.194e^-5	0.247	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	25403537	3R_25403537_INS [dm3] 3R_29577815_INS [dm6]	G	GAG	4.204e^-5	0.247	INTERGENIC	TF binding site mE1_TFBS_sens
2R	10709770	2R_10709770_SNP [dm3] 2R_14822265_SNP [dm6]	C	T	4.217e^-5	0.247	INTERGENIC
3L	10216893	3L_10216893_SNP [dm3] 3L_10223793_SNP [dm6]	G	T	4.261e^-5	0.248	UPSTREAM scramb1 INTRON scramb1
X	11031712	X_11031712_SNP [dm3] X_11137679_SNP [dm6]	T	C	4.281e^-5	0.248	UPSTREAM Klp10A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18746854	3L_18746854_SNP [dm3] 3L_18753754_SNP [dm6]	A	T	4.310e^-5	0.248	INTRON ftz-f1
X	7807023	X_7807023_SNP [dm3] X_7912990_SNP [dm6]	A	G	4.328e^-5	0.248	INTRON snz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	7807540	X_7807540_SNP [dm3] X_7913507_SNP [dm6]	A	G	4.328e^-5	0.248	SYNONYMOUS_CODING snz
3L	18228774	3L_18228774_SNP [dm3] 3L_18235674_SNP [dm6]	G	A	4.357e^-5	0.248	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11055512	2R_11055512_SNP [dm3] 2R_15168007_SNP [dm6]	T	C	4.358e^-5	0.248	INTRON igl
2L	19912392	2L_19912392_DEL [dm3] 2L_19912392_DEL [dm6]	AA	A	4.361e^-5	0.248	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
2R	16322567	2R_16322567_SNP [dm3] 2R_20435062_SNP [dm6]	G	T	4.373e^-5	0.248	INTRON CG12484
2L	4582279	2L_4582279_SNP [dm3] 2L_4582279_SNP [dm6]	A	T	4.374e^-5	0.248	INTRON dp EXON CR43716
2R	10548389	2R_10548389_SNP [dm3] 2R_14660884_SNP [dm6]	T	A	4.382e^-5	0.248	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10507866	2R_10507866_SNP [dm3] 2R_14620361_SNP [dm6]	G	A	4.408e^-5	0.249	SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15628530	3R_15628530_SNP [dm3] 3R_19802808_SNP [dm6]	T	C	4.445e^-5	0.25	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9356079	2R_9356079_SNP [dm3] 2R_13468574_SNP [dm6]	A	C	4.505e^-5	0.253	INTRON arr	TF binding site mE1_TFBS_chinmo
3L	11630178	3L_11630178_SNP [dm3] 3L_11637078_SNP [dm6]	T	C	4.563e^-5	0.255	INTRON CG32091
2L	3512183	2L_3512183_SNP [dm3] 2L_3512183_SNP [dm6]	A	C	4.582e^-5	0.255	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10274817	2R_10274817_SNP [dm3] 2R_14387312_SNP [dm6]	C	A	4.590e^-5	0.255	INTERGENIC
2L	7967558	2L_7967558_SNP [dm3] 2L_7967558_SNP [dm6]	A	G	4.599e^-5	0.255	INTRON Snoo
2R	7474883	2R_7474883_SNP [dm3] 2R_11587378_SNP [dm6]	C	T	4.603e^-5	0.255	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	11786700	2L_11786700_SNP [dm3] 2L_11786700_SNP [dm6]	G	C	4.625e^-5	0.255	INTERGENIC
2L	13041185	2L_13041185_SNP [dm3] 2L_13041185_SNP [dm6]	G	A	4.686e^-5	0.256	INTRON CG9932
2R	13323944	2R_13323944_SNP [dm3] 2R_17436439_SNP [dm6]	G	A	4.689e^-5	0.256	INTRON EDTP	TF binding site BDTNP1_TFBS_dl
2L	17963198	2L_17963198_INS [dm3] 2L_17963198_INS [dm6]	T	TTT	4.689e^-5	0.256	UPSTREAM CG5674 INTRON btv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	12620611	2R_12620611_SNP [dm3] 2R_16733106_SNP [dm6]	C	A	4.697e^-5	0.256	UPSTREAM CG30463 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	7002128	3L_7002128_SNP [dm3] 3L_7009028_SNP [dm6]	A	G	4.719e^-5	0.257	INTRON Mp
2L	9202525	2L_9202525_SNP [dm3] 2L_9202525_SNP [dm6]	A	C	4.747e^-5	0.257	INTRON tai
2L	19908906	2L_19908906_INS [dm3] 2L_19908906_INS [dm6]	T	TTGAATGT	4.752e^-5	0.257	INTRON sick	TF binding site mE1_TFBS_chinmo
2R	10594763	2R_10594763_SNP [dm3] 2R_14707258_SNP [dm6]	C	A	4.760e^-5	0.257	INTRON mspo
X	3179210	X_3179210_SNP [dm3] X_3285177_SNP [dm6]	C	T	4.903e^-5	0.264	INTRON dnc
2R	11957750	2R_11957750_SNP [dm3] 2R_16070245_SNP [dm6]	G	A	4.918e^-5	0.264	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9632130	2R_9632130_SNP [dm3] 2R_13744625_SNP [dm6]	A	G	4.977e^-5	0.266	INTRON fas
2R	10218707	2R_10218707_SNP [dm3] 2R_14331202_SNP [dm6]	G	A	5.037e^-5	0.268	INTRON Shroom
2R	10372198	2R_10372198_SNP [dm3] 2R_14484693_SNP [dm6]	C	A	5.042e^-5	0.268	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4265038	2L_4265038_SNP [dm3] 2L_4265038_SNP [dm6]	A	T	5.065e^-5	0.268	INTERGENIC
2L	9113240	2L_9113240_SNP [dm3] 2L_9113240_SNP [dm6]	T	C	5.119e^-5	0.27	SYNONYMOUS_CODING Or30a
X	9986047	X_9986047_SNP [dm3] X_10092014_SNP [dm6]	A	T	5.144e^-5	0.271	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18051240	2R_18051240_MNP [dm3] 2R_22163735_MNP [dm6]	ACTAA	TGGTT	5.150e^-5	0.271	UTR_3_PRIME CG34206 DOWNSTREAM CG34206 INTRON a INTRAGENIC CG34206	TF binding site mE1_TFBS_cad
2L	6001044	2L_6001044_SNP [dm3] 2L_6001044_SNP [dm6]	G	A	5.197e^-5	0.272	SYNONYMOUS_CODING Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10921289	3L_10921289_SNP [dm3] 3L_10928189_SNP [dm6]	G	T	5.232e^-5	0.272	INTERGENIC
2L	19912387	2L_19912387_SNP [dm3] 2L_19912387_SNP [dm6]	T	A	5.264e^-5	0.272	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
2R	17775947	2R_17775947_SNP [dm3] 2R_21888442_SNP [dm6]	C	A	5.272e^-5	0.272	INTRON Fili
2L	9260169	2L_9260169_SNP [dm3] 2L_9260169_SNP [dm6]	T	C	5.273e^-5	0.272	INTRON Ggamma30A
3L	7147770	3L_7147770_SNP [dm3] 3L_7154670_SNP [dm6]	C	T	5.280e^-5	0.272	INTRON corn	TF binding site BDTNP1_TFBS_twi
2R	18465239	2R_18465239_SNP [dm3] 2R_22577734_SNP [dm6]	C	G	5.288e^-5	0.272	INTRON dnr1
2L	7872467	2L_7872467_SNP [dm3] 2L_7872467_SNP [dm6]	C	A	5.303e^-5	0.272	UPSTREAM tRNA:G3:28D & 1 other INTERGENIC
3R	22265534	3R_22265534_DEL [dm3] 3R_26439812_DEL [dm6]	CTG	C	5.311e^-5	0.272	UPSTREAM tx INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	3025752	3L_3025752_SNP [dm3] 3L_3025752_SNP [dm6]	A	G	5.323e^-5	0.272	SYNONYMOUS_CODING aly	TF binding site mE1_TFBS_h
2R	10588568	2R_10588568_SNP [dm3] 2R_14701063_SNP [dm6]	T	C	5.366e^-5	0.273	INTRON mspo
2L	2685254	2L_2685254_SNP [dm3] 2L_2685254_SNP [dm6]	T	C	5.407e^-5	0.273	INTRON CG31690
2R	14706717	2R_14706717_SNP [dm3] 2R_18819212_SNP [dm6]	A	G	5.408e^-5	0.273	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	13075547	2R_13075547_SNP [dm3] 2R_17188042_SNP [dm6]	C	A	5.411e^-5	0.273	UPSTREAM CR44388 DOWNSTREAM CR44389 INTERGENIC
2R	7841421	2R_7841421_SNP [dm3] 2R_11953916_SNP [dm6]	G	T	5.423e^-5	0.273	INTRON CG13188
2R	12011783	2R_12011783_SNP [dm3] 2R_16124278_SNP [dm6]	C	T	5.466e^-5	0.274	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_Ubx
X	9471620	X_9471620_SNP [dm3] X_9577587_SNP [dm6]	G	T	5.467e^-5	0.274	INTRON CG32699
X	17233764	X_17233764_SNP [dm3] X_17339731_SNP [dm6]	G	A	5.485e^-5	0.274	INTERGENIC
2L	4374910	2L_4374910_SNP [dm3] 2L_4374910_SNP [dm6]	T	C	5.529e^-5	0.275	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11676310	2L_11676310_SNP [dm3] 2L_11676310_SNP [dm6]	T	G	5.543e^-5	0.275	INTERGENIC
2R	7466905	2R_7466905_SNP [dm3] 2R_11579400_SNP [dm6]	T	C	5.549e^-5	0.275	UTR_3_PRIME tou DOWNSTREAM tou
3L	20117766	3L_20117766_SNP [dm3] 3L_20124666_SNP [dm6]	G	A	5.562e^-5	0.275	SYNONYMOUS_CODING CG7365
2R	10004495	2R_10004495_SNP [dm3] 2R_14116990_SNP [dm6]	T	A	5.570e^-5	0.275	INTRON Prosap
X	10628284	X_10628284_SNP [dm3] X_10734251_SNP [dm6]	C	T	5.599e^-5	0.275	INTRON CG32676
2L	18904016	2L_18904016_SNP [dm3] 2L_18904016_SNP [dm6]	A	G	5.609e^-5	0.275	INTERGENIC
2R	15595812	2R_15595812_SNP [dm3] 2R_19708307_SNP [dm6]	G	A	5.632e^-5	0.275	INTERGENIC
2R	10672817	2R_10672817_SNP [dm3] 2R_14785312_SNP [dm6]	G	T	5.637e^-5	0.275	INTRON kn
2L	9259433	2L_9259433_SNP [dm3] 2L_9259433_SNP [dm6]	C	T	5.661e^-5	0.276	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
3L	14967171	3L_14967171_SNP [dm3] 3L_14974071_SNP [dm6]	G	T	5.695e^-5	0.277	UPSTREAM Ocho DOWNSTREAM Brd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	6003436	2L_6003436_SNP [dm3] 2L_6003436_SNP [dm6]	C	T	5.766e^-5	0.278	UTR_3_PRIME Tsp26A UPSTREAM CR43866 DOWNSTREAM Gal
2L	6003437	2L_6003437_SNP [dm3] 2L_6003437_SNP [dm6]	A	T	5.766e^-5	0.278	UTR_3_PRIME Tsp26A UPSTREAM CR43866 DOWNSTREAM Gal
2L	19907175	2L_19907175_SNP [dm3] 2L_19907175_SNP [dm6]	T	C	5.767e^-5	0.278	INTRON sick
3L	2838240	3L_2838240_SNP [dm3] 3L_2838240_SNP [dm6]	C	T	5.795e^-5	0.279	INTRON CG43444
2L	2685246	2L_2685246_SNP [dm3] 2L_2685246_SNP [dm6]	A	C	5.869e^-5	0.281	INTRON CG31690
X	17188235	X_17188235_SNP [dm3] X_17294202_SNP [dm6]	T	C	5.876e^-5	0.281	INTRON CG5445 & 1 other
2R	15595908	2R_15595908_SNP [dm3] 2R_19708403_SNP [dm6]	A	C	5.895e^-5	0.281	INTERGENIC
3R	10199211	3R_10199211_SNP [dm3] 3R_14373489_SNP [dm6]	A	C	6.009e^-5	0.283	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	995450	2L_995450_SNP [dm3] 2L_995450_SNP [dm6]	C	G	6.028e^-5	0.283	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8244847	3L_8244847_SNP [dm3] 3L_8251747_SNP [dm6]	A	T	6.052e^-5	0.283	INTRON Dscam4
2R	7476111	2R_7476111_SNP [dm3] 2R_11588606_SNP [dm6]	C	G	6.066e^-5	0.283	SYNONYMOUS_CODING tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad
2L	3512033	2L_3512033_SNP [dm3] 2L_3512033_SNP [dm6]	G	A	6.075e^-5	0.283	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18430560	2R_18430560_SNP [dm3] 2R_22543055_SNP [dm6]	T	C	6.078e^-5	0.283	INTRON px	TF binding site mE1_TFBS_cad
3L	2263668	3L_2263668_SNP [dm3] 3L_2263668_SNP [dm6]	T	A	6.080e^-5	0.283	NON_SYNONYMOUS_CODING ecd DOWNSTREAM CG13807	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	13508942	2R_13508942_SNP [dm3] 2R_17621437_SNP [dm6]	G	T	6.086e^-5	0.283	INTRON CG10936
2R	17770725	2R_17770725_SNP [dm3] 2R_21883220_SNP [dm6]	T	A	6.086e^-5	0.283	UPSTREAM Fili & 1 other INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	18985649	2R_18985649_SNP [dm3] 2R_23098126_SNP [dm6]	C	T	6.102e^-5	0.283	INTERGENIC
2R	10672683	2R_10672683_SNP [dm3] 2R_14785178_SNP [dm6]	C	A	6.151e^-5	0.283	INTRON kn
3L	1000080	3L_1000080_SNP [dm3] 3L_1000080_SNP [dm6]	G	A	6.156e^-5	0.283	INTRON trio
2L	9259413	2L_9259413_SNP [dm3] 2L_9259413_SNP [dm6]	G	C	6.164e^-5	0.283	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
2L	18282852	2L_18282852_SNP [dm3] 2L_18282852_SNP [dm6]	A	T	6.201e^-5	0.283	INTERGENIC
3R	25600877	3R_25600877_SNP [dm3] 3R_29775155_SNP [dm6]	C	T	6.205e^-5	0.283	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21964074	3R_21964074_SNP [dm3] 3R_26138352_SNP [dm6]	C	T	6.219e^-5	0.283	INTERGENIC
3R	6179390	3R_6179390_DEL [dm3] 3R_10353668_DEL [dm6]	AT	A	6.239e^-5	0.283	INTRON jumu	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
2L	16039991	2L_16039991_SNP [dm3] 2L_16039991_SNP [dm6]	T	C	6.253e^-5	0.283	UTR_3_PRIME beat-Ic
2L	3394496	2L_3394496_SNP [dm3] 2L_3394496_SNP [dm6]	G	A	6.254e^-5	0.283	INTERGENIC	TF binding site mE1_TFBS_inv
2L	3895197	2L_3895197_SNP [dm3] 2L_3895197_SNP [dm6]	T	A	6.265e^-5	0.283	INTRON capu	TF binding site mE1_TFBS_kn
2R	10647273	2R_10647273_SNP [dm3] 2R_14759768_SNP [dm6]	G	A	6.297e^-5	0.283	UTR_3_PRIME Spred UPSTREAM CG12857
2L	9186137	2L_9186137_SNP [dm3] 2L_9186137_SNP [dm6]	A	C	6.298e^-5	0.283	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15595811	2R_15595811_SNP [dm3] 2R_19708306_SNP [dm6]	C	A	6.312e^-5	0.283	INTERGENIC
2R	6867759	2R_6867759_SNP [dm3] 2R_10980254_SNP [dm6]	G	A	6.314e^-5	0.283	UTR_3_PRIME luna
3R	16397801	3R_16397801_SNP [dm3] 3R_20572079_SNP [dm6]	G	A	6.318e^-5	0.283	SYNONYMOUS_CODING CG5191	TF binding site mE1_TFBS_chinmo
2L	19908887	2L_19908887_SNP [dm3] 2L_19908887_SNP [dm6]	A	T	6.360e^-5	0.283	INTRON sick	TF binding site mE1_TFBS_chinmo
2R	8730973	2R_8730973_SNP [dm3] 2R_12843468_SNP [dm6]	C	A	6.362e^-5	0.283	NON_SYNONYMOUS_CODING Or49b UPSTREAM Cyp9h1	TF binding site BDTNP1_TFBS_twi
3R	12857210	3R_12857210_SNP [dm3] 3R_17031488_SNP [dm6]	C	T	6.366e^-5	0.283	UPSTREAM CG31268 DOWNSTREAM CG5225 INTERGENIC
3R	7748810	3R_7748810_SNP [dm3] 3R_11923088_SNP [dm6]	C	T	6.367e^-5	0.283	INTRON Cad87A
2R	5973359	2R_5973359_SNP [dm3] 2R_10085854_SNP [dm6]	T	C	6.382e^-5	0.283	SYNONYMOUS_CODING sut4 INTRON CG2269
3R	13773939	3R_13773939_SNP [dm3] 3R_17948217_SNP [dm6]	T	C	6.393e^-5	0.283	INTRON cpo
X	4223163	X_4223163_SNP [dm3] X_4329130_SNP [dm6]	T	A	6.427e^-5	0.283	INTRON norpA & 1 other
2L	3401507	2L_3401507_SNP [dm3] 2L_3401507_SNP [dm6]	A	G	6.427e^-5	0.283	INTERGENIC
X	12262403	X_12262403_SNP [dm3] X_12368370_SNP [dm6]	G	C	6.472e^-5	0.284	INTERGENIC
2R	15345072	2R_15345072_SNP [dm3] 2R_19457567_SNP [dm6]	G	C	6.516e^-5	0.285	INTRON mei-W68 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	11480287	2R_11480287_SNP [dm3] 2R_15592782_SNP [dm6]	A	T	6.522e^-5	0.285	INTERGENIC
2R	12665612	2R_12665612_SNP [dm3] 2R_16778107_SNP [dm6]	T	A	6.534e^-5	0.285	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4049714	X_4049714_INS [dm3] X_4155681_INS [dm6]	A	AA	6.562e^-5	0.286	INTRON Fas2
2R	12971953	2R_12971953_SNP [dm3] 2R_17084448_SNP [dm6]	C	G	6.642e^-5	0.287	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15389918	2L_15389918_SNP [dm3] 2L_15389918_SNP [dm6]	T	A	6.659e^-5	0.287	INTERGENIC
3L	21785908	3L_21785908_SNP [dm3] 3L_21792808_SNP [dm6]	G	C	6.665e^-5	0.287	INTERGENIC
2L	9025487	2L_9025487_SNP [dm3] 2L_9025487_SNP [dm6]	T	C	6.671e^-5	0.287	UPSTREAM CG9582 DOWNSTREAM CR44352 INTRON CG9582
3R	6724708	3R_6724708_SNP [dm3] 3R_10898986_SNP [dm6]	A	G	6.689e^-5	0.287	UPSTREAM CR45578 INTERGENIC
2R	14609918	2R_14609918_SNP [dm3] 2R_18722413_SNP [dm6]	A	T	6.708e^-5	0.287	INTRON Hs3st-A
2R	10595588	2R_10595588_SNP [dm3] 2R_14708083_SNP [dm6]	C	T	6.711e^-5	0.287	INTRON mspo
2L	6001191	2L_6001191_SNP [dm3] 2L_6001191_SNP [dm6]	C	T	6.728e^-5	0.287	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10308732	2R_10308732_SNP [dm3] 2R_14421227_SNP [dm6]	G	A	6.737e^-5	0.287	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	16131982	X_16131982_SNP [dm3] X_16237949_SNP [dm6]	T	A	6.738e^-5	0.287	INTERGENIC
2L	4389077	2L_4389077_SNP [dm3] 2L_4389077_SNP [dm6]	G	T	6.809e^-5	0.289	INTRON Tps1
2L	3895158	2L_3895158_MNP [dm3] 2L_3895158_MNP [dm6]	AGC	TTA	6.838e^-5	0.289	INTRON capu	TF binding site mE1_TFBS_kn
3L	7824583	3L_7824583_SNP [dm3] 3L_7831483_SNP [dm6]	A	T	6.853e^-5	0.289	SYNONYMOUS_CODING Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_chinmo
X	4216187	X_4216187_SNP [dm3] X_4322154_SNP [dm6]	A	T	6.866e^-5	0.289	UTR_5_PRIME mRpL33 UPSTREAM norpA DOWNSTREAM CG2982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10153715	2R_10153715_SNP [dm3] 2R_14266210_SNP [dm6]	A	T	6.893e^-5	0.29	INTRON CG8547
2L	20260736	2L_20260736_SNP [dm3] 2L_20260736_SNP [dm6]	G	A	6.916e^-5	0.29	INTERGENIC
3L	8153146	3L_8153146_SNP [dm3] 3L_8160046_SNP [dm6]	G	A	6.948e^-5	0.291	UPSTREAM CG43886 DOWNSTREAM CG13675 INTERGENIC
3R	15628550	3R_15628550_SNP [dm3] 3R_19802828_SNP [dm6]	G	T	6.961e^-5	0.291	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18050570	2R_18050570_SNP [dm3] 2R_22163065_SNP [dm6]	A	C	6.977e^-5	0.291	NON_SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
2L	3271430	2L_3271430_SNP [dm3] 2L_3271430_SNP [dm6]	A	C	7.027e^-5	0.291	NON_SYNONYMOUS_CODING CG3347
3R	25403544	3R_25403544_SNP [dm3] 3R_29577822_SNP [dm6]	A	C	7.031e^-5	0.291	INTERGENIC	TF binding site mE1_TFBS_sens
2L	5684201	2L_5684201_SNP [dm3] 2L_5684201_SNP [dm6]	T	A	7.044e^-5	0.291	INTERGENIC
3R	13773994	3R_13773994_SNP [dm3] 3R_17948272_SNP [dm6]	T	A	7.048e^-5	0.291	INTRON cpo
2L	9186303	2L_9186303_SNP [dm3] 2L_9186303_SNP [dm6]	C	T	7.124e^-5	0.293	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9186463	2L_9186463_SNP [dm3] 2L_9186463_SNP [dm6]	A	G	7.125e^-5	0.293	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3895207	2L_3895207_INS [dm3] 2L_3895207_INS [dm6]	T	TGACGAGGTA	7.178e^-5	0.294	INTRON capu	TF binding site mE1_TFBS_kn
2L	3895216	2L_3895216_SNP [dm3] 2L_3895216_SNP [dm6]	T	C	7.178e^-5	0.294	INTRON capu	TF binding site mE1_TFBS_kn
2L	11728644	2L_11728644_SNP [dm3] 2L_11728644_SNP [dm6]	G	A	7.184e^-5	0.294	INTERGENIC
2L	6001227	2L_6001227_SNP [dm3] 2L_6001227_SNP [dm6]	G	T	7.266e^-5	0.296	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9207645	3L_9207645_SNP [dm3] 3L_9214545_SNP [dm6]	G	T	7.298e^-5	0.297	INTRON CG4476
2R	13135722	2R_13135722_SNP [dm3] 2R_17248217_SNP [dm6]	T	A	7.310e^-5	0.297	UPSTREAM CG12699 INTRON mbl
X	4224985	X_4224985_SNP [dm3] X_4330952_SNP [dm6]	C	T	7.347e^-5	0.298	INTRON norpA
2R	20164042	2R_20164042_SNP [dm3] 2R_24276519_SNP [dm6]	G	T	7.378e^-5	0.298	INTRON nvy	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	1452153	3L_1452153_SNP [dm3] 3L_1452153_SNP [dm6]	C	A	7.392e^-5	0.298	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9632167	2R_9632167_SNP [dm3] 2R_13744662_SNP [dm6]	T	C	7.432e^-5	0.299	INTRON fas
X	8172305	X_8172305_SNP [dm3] X_8278272_SNP [dm6]	A	G	7.437e^-5	0.299	UTR_3_PRIME nAChRalpha3
2L	3881929	2L_3881929_SNP [dm3] 2L_3881929_SNP [dm6]	A	G	7.455e^-5	0.299	INTRON capu
2R	8915792	2R_8915792_INS [dm3] 2R_13028287_INS [dm6]	C	CTGCTACC	7.488e^-5	0.299	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19907191	2L_19907191_SNP [dm3] 2L_19907191_SNP [dm6]	G	A	7.491e^-5	0.299	INTRON sick
2L	7775314	2L_7775314_SNP [dm3] 2L_7775314_SNP [dm6]	A	G	7.513e^-5	0.299	DOWNSTREAM CG7179 & 1 other INTERGENIC
2L	8390381	2L_8390381_SNP [dm3] 2L_8390381_SNP [dm6]	C	T	7.535e^-5	0.299	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11336690	2L_11336690_SNP [dm3] 2L_11336690_SNP [dm6]	A	C	7.550e^-5	0.299	INTERGENIC
3L	8503918	3L_8503918_SNP [dm3] 3L_8510818_SNP [dm6]	A	G	7.565e^-5	0.299	NON_SYNONYMOUS_CODING CG6745	TF binding site mE1_TFBS_sens
2L	3272651	2L_3272651_SNP [dm3] 2L_3272651_SNP [dm6]	T	C	7.598e^-5	0.299	DOWNSTREAM CG3347 INTERGENIC
3L	3838657	3L_3838657_SNP [dm3] 3L_3838657_SNP [dm6]	G	A	7.618e^-5	0.299	NON_SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9303762	2L_9303762_SNP [dm3] 2L_9303762_SNP [dm6]	T	C	7.626e^-5	0.299	DOWNSTREAM CR42844 INTERGENIC
2L	9024896	2L_9024896_SNP [dm3] 2L_9024896_SNP [dm6]	T	G	7.637e^-5	0.299	SYNONYMOUS_CODING CG9582 DOWNSTREAM CR44352
2L	3895156	2L_3895156_SNP [dm3] 2L_3895156_SNP [dm6]	T	A	7.675e^-5	0.299	INTRON capu	TF binding site mE1_TFBS_kn
3L	10866251	3L_10866251_SNP [dm3] 3L_10873151_SNP [dm6]	T	G	7.685e^-5	0.299	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6331536	X_6331536_SNP [dm3] X_6437503_SNP [dm6]	A	G	7.686e^-5	0.299	INTRON CG42340
3R	12910369	3R_12910369_SNP [dm3] 3R_17084647_SNP [dm6]	C	T	7.689e^-5	0.299	UTR_3_PRIME kuk UPSTREAM GckIII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13095737	2R_13095737_SNP [dm3] 2R_17208232_SNP [dm6]	A	G	7.689e^-5	0.299	INTERGENIC
X	7329536	X_7329536_SNP [dm3] X_7435503_SNP [dm6]	T	C	7.704e^-5	0.299	INTERGENIC
3L	1267628	3L_1267628_SNP [dm3] 3L_1267628_SNP [dm6]	C	A	7.746e^-5	0.3	INTRON CG9134
2L	9186269	2L_9186269_SNP [dm3] 2L_9186269_SNP [dm6]	C	T	7.771e^-5	0.3	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11055574	2R_11055574_SNP [dm3] 2R_15168069_SNP [dm6]	C	A	7.820e^-5	0.3	INTRON igl
2L	8999989	2L_8999989_SNP [dm3] 2L_8999989_SNP [dm6]	C	T	7.834e^-5	0.3	DOWNSTREAM Try29F INTERGENIC
2L	8989274	2L_8989274_SNP [dm3] 2L_8989274_SNP [dm6]	G	T	7.852e^-5	0.3	UTR_5_PRIME rost UPSTREAM rost INTRON rost
2R	6061816	2R_6061816_SNP [dm3] 2R_10174311_SNP [dm6]	G	A	7.866e^-5	0.3	INTRON KCNQ
3L	3021531	3L_3021531_SNP [dm3] 3L_3021531_SNP [dm6]	A	G	7.869e^-5	0.3	INTERGENIC
3R	22265556	3R_22265556_SNP [dm3] 3R_26439834_SNP [dm6]	G	A	7.884e^-5	0.3	UPSTREAM tx INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	18319533	2R_18319533_DEL [dm3] 2R_22432028_DEL [dm6]	TCTG	T	7.898e^-5	0.3	INTERGENIC
X	21283478	X_21283478_SNP [dm3] X_21412451_SNP [dm6]	A	G	7.919e^-5	0.3	INTERGENIC
X	10057975	X_10057975_SNP [dm3] X_10163942_SNP [dm6]	G	T	7.932e^-5	0.3	INTRON CR44894 & 1 other
3L	20119686	3L_20119686_SNP [dm3] 3L_20126586_SNP [dm6]	T	A	7.957e^-5	0.3	UPSTREAM CG7365 INTRON CG7365
X	7329519	X_7329519_SNP [dm3] X_7435486_SNP [dm6]	A	G	7.973e^-5	0.3	INTERGENIC
2L	8390625	2L_8390625_SNP [dm3] 2L_8390625_SNP [dm6]	T	C	7.986e^-5	0.3	SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23490152	3R_23490152_SNP [dm3] 3R_27664430_SNP [dm6]	C	G	7.992e^-5	0.3	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
3L	3029549	3L_3029549_SNP [dm3] 3L_3029549_SNP [dm6]	G	A	8.000e^-5	0.3	INTERGENIC
3L	10508810	3L_10508810_SNP [dm3] 3L_10515710_SNP [dm6]	T	A	8.004e^-5	0.3	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9120933	2L_9120933_SNP [dm3] 2L_9120933_SNP [dm6]	G	C	8.031e^-5	0.3	DOWNSTREAM CR44617 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2344777	3L_2344777_SNP [dm3] 3L_2344777_SNP [dm6]	A	G	8.055e^-5	0.3	UTR_3_PRIME MsR1
3L	12312295	3L_12312295_SNP [dm3] 3L_12319195_SNP [dm6]	C	A	8.085e^-5	0.301	INTERGENIC
2L	975892	2L_975892_SNP [dm3] 2L_975892_SNP [dm6]	A	G	8.098e^-5	0.301	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	16996900	2R_16996900_SNP [dm3] 2R_21109395_SNP [dm6]	C	T	8.120e^-5	0.301	INTRON ktub
2R	17718786	2R_17718786_SNP [dm3] 2R_21831281_SNP [dm6]	T	C	8.154e^-5	0.301	INTRON CG13492
3L	20096808	3L_20096808_SNP [dm3] 3L_20103708_SNP [dm6]	C	T	8.172e^-5	0.301	UTR_5_PRIME CG14186 UPSTREAM CR44679	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	11711648	2R_11711648_SNP [dm3] 2R_15824143_SNP [dm6]	C	A	8.173e^-5	0.301	INTRON tun	TF binding site mE1_TFBS_cad
2R	18051208	2R_18051208_SNP [dm3] 2R_22163703_SNP [dm6]	T	G	8.179e^-5	0.301	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
2R	10171174	2R_10171174_SNP [dm3] 2R_14283669_SNP [dm6]	G	A	8.234e^-5	0.301	INTRON Ih
2L	9253255	2L_9253255_SNP [dm3] 2L_9253255_SNP [dm6]	A	G	8.241e^-5	0.301	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11481897	3L_11481897_SNP [dm3] 3L_11488797_SNP [dm6]	A	C	8.245e^-5	0.301	INTRON chrb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	11474565	2L_11474565_INS [dm3] 2L_11474565_INS [dm6]	T	TTAT	8.252e^-5	0.301	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA
2R	12012548	2R_12012548_SNP [dm3] 2R_16125043_SNP [dm6]	A	G	8.288e^-5	0.302	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4435609	3L_4435609_SNP [dm3] 3L_4435609_SNP [dm6]	C	T	8.318e^-5	0.302	UTR_3_PRIME nAChRbeta1
3L	5142183	3L_5142183_SNP [dm3] 3L_5149083_SNP [dm6]	G	T	8.331e^-5	0.302	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen	TF binding site mE1_TFBS_chinmo
2L	9242343	2L_9242343_SNP [dm3] 2L_9242343_SNP [dm6]	G	A	8.370e^-5	0.303	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_chinmo
3R	23560308	3R_23560308_SNP [dm3] 3R_27734586_SNP [dm6]	C	T	8.407e^-5	0.303	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3777584	3L_3777584_SNP [dm3] 3L_3777584_SNP [dm6]	C	T	8.422e^-5	0.303	INTRON CG32264
2L	11722836	2L_11722836_SNP [dm3] 2L_11722836_SNP [dm6]	C	T	8.430e^-5	0.303	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3392446	2L_3392446_SNP [dm3] 2L_3392446_SNP [dm6]	A	G	8.449e^-5	0.304	INTERGENIC
2R	10218704	2R_10218704_SNP [dm3] 2R_14331199_SNP [dm6]	C	T	8.492e^-5	0.305	INTRON Shroom
3R	21340315	3R_21340315_SNP [dm3] 3R_25514593_SNP [dm6]	C	A	8.578e^-5	0.305	INTERGENIC
2L	4259469	2L_4259469_SNP [dm3] 2L_4259469_SNP [dm6]	A	G	8.592e^-5	0.305	DOWNSTREAM CR44080 INTERGENIC
2L	6593870	2L_6593870_SNP [dm3] 2L_6593870_SNP [dm6]	G	A	8.600e^-5	0.305	INTRON CG11319
3R	12873703	3R_12873703_SNP [dm3] 3R_17047981_SNP [dm6]	A	G	8.606e^-5	0.305	UTR_3_PRIME Patr-1 DOWNSTREAM Patr-1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	17103413	X_17103413_SNP [dm3] X_17209380_SNP [dm6]	C	T	8.610e^-5	0.305	UTR_3_PRIME CG12995 DOWNSTREAM CG32563	TF binding site BDTNP1_TFBS_sna
X	9584882	X_9584882_SNP [dm3] X_9690849_SNP [dm6]	C	G	8.645e^-5	0.305	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9121141	2L_9121141_SNP [dm3] 2L_9121141_SNP [dm6]	A	G	8.663e^-5	0.305	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	10572661	2R_10572661_SNP [dm3] 2R_14685156_SNP [dm6]	A	C	8.688e^-5	0.305	INTRON mspo
2L	9051694	2L_9051694_SNP [dm3] 2L_9051694_SNP [dm6]	C	G	8.696e^-5	0.305	UTR_3_PRIME CG31708
2R	9211343	2R_9211343_SNP [dm3] 2R_13323838_SNP [dm6]	G	A	8.711e^-5	0.305	INTERGENIC
2R	13657166	2R_13657166_SNP [dm3] 2R_17769661_SNP [dm6]	G	C	8.714e^-5	0.305	SYNONYMOUS_CODING CG18635 DOWNSTREAM CG6362	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	2395639	2L_2395639_SNP [dm3] 2L_2395639_SNP [dm6]	G	A	8.728e^-5	0.305	INTRON VGlut
2L	9030231	2L_9030231_SNP [dm3] 2L_9030231_SNP [dm6]	T	G	8.760e^-5	0.305	INTRON CG9582 & 1 other
3L	19356580	3L_19356580_SNP [dm3] 3L_19363480_SNP [dm6]	C	G	8.766e^-5	0.305	INTRON CG32206
2L	3895191	2L_3895191_SNP [dm3] 2L_3895191_SNP [dm6]	C	G	8.778e^-5	0.305	INTRON capu	TF binding site mE1_TFBS_kn
2L	17066954	2L_17066954_SNP [dm3] 2L_17066954_SNP [dm6]	T	A	8.782e^-5	0.305	INTERGENIC
2L	10241404	2L_10241404_SNP [dm3] 2L_10241404_SNP [dm6]	G	A	8.783e^-5	0.305	SYNONYMOUS_CODING me31B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18283959	2L_18283959_INS [dm3] 2L_18283959_INS [dm6]	A	AA	8.814e^-5	0.305	DOWNSTREAM CG31787 INTERGENIC
2L	3395959	2L_3395959_SNP [dm3] 2L_3395959_SNP [dm6]	G	A	8.831e^-5	0.305	INTERGENIC
X	5719856	X_5719856_SNP [dm3] X_5825823_SNP [dm6]	A	G	8.845e^-5	0.305	INTRON CG15765
3R	25647177	3R_25647177_SNP [dm3] 3R_29821455_SNP [dm6]	C	T	8.884e^-5	0.305	INTRON neo
X	4222894	X_4222894_SNP [dm3] X_4328861_SNP [dm6]	C	T	8.889e^-5	0.305	INTRON norpA & 1 other	TF binding site BDTNP1_TFBS_twi
2R	10121106	2R_10121106_SNP [dm3] 2R_14233601_SNP [dm6]	G	A	8.890e^-5	0.305	UPSTREAM mir-1016 INTRON Opa1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25474199	3R_25474199_SNP [dm3] 3R_29648477_SNP [dm6]	C	G	8.899e^-5	0.305	INTRON Dop1R2
2L	18446778	2L_18446778_SNP [dm3] 2L_18446778_SNP [dm6]	C	T	8.928e^-5	0.305	SPLICE_SITE_REGION ncm INTRON ncm
2L	995417	2L_995417_SNP [dm3] 2L_995417_SNP [dm6]	A	T	8.937e^-5	0.305	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12141445	2L_12141445_SNP [dm3] 2L_12141445_SNP [dm6]	C	T	8.956e^-5	0.305	INTERGENIC
2R	8644664	2R_8644664_DEL [dm3] 2R_12757159_DEL [dm6]	TTGAT	T	8.971e^-5	0.305	UTR_3_PRIME mRpL18 & 1 other UPSTREAM Taz & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	17719544	2R_17719544_SNP [dm3] 2R_21832039_SNP [dm6]	T	C	8.979e^-5	0.305	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
X	4050453	X_4050453_DEL [dm3] X_4156420_DEL [dm6]	TTCAGTGGGGTTTGGGGGCT...	T	9.020e^-5	0.306	INTRON Fas2
2L	3394393	2L_3394393_SNP [dm3] 2L_3394393_SNP [dm6]	G	C	9.025e^-5	0.306	INTERGENIC	TF binding site mE1_TFBS_inv
2R	5971493	2R_5971493_SNP [dm3] 2R_10083988_SNP [dm6]	T	A	9.079e^-5	0.307	UTR_3_PRIME egr
2L	9097057	2L_9097057_SNP [dm3] 2L_9097057_SNP [dm6]	C	T	9.098e^-5	0.307	UPSTREAM CG31609 INTERGENIC
2R	8701158	2R_8701158_SNP [dm3] 2R_12813653_SNP [dm6]	G	A	9.139e^-5	0.307	INTERGENIC
3L	3020925	3L_3020925_SNP [dm3] 3L_3020925_SNP [dm6]	G	A	9.186e^-5	0.307	INTERGENIC
2R	14515931	2R_14515931_SNP [dm3] 2R_18628426_SNP [dm6]	G	A	9.250e^-5	0.307	SYNONYMOUS_CODING Eip55E DOWNSTREAM Sec6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10575491	2R_10575491_SNP [dm3] 2R_14687986_SNP [dm6]	C	G	9.252e^-5	0.307	INTRON mspo
2R	10332602	2R_10332602_SNP [dm3] 2R_14445097_SNP [dm6]	G	C	9.263e^-5	0.307	INTRON Oaz
2L	9186267	2L_9186267_SNP [dm3] 2L_9186267_SNP [dm6]	G	A	9.283e^-5	0.307	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9063482	X_9063482_SNP [dm3] X_9169449_SNP [dm6]	T	C	9.297e^-5	0.307	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9033156	2L_9033156_DEL [dm3] 2L_9033156_DEL [dm6]	TC	T	9.316e^-5	0.307	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	11414815	3L_11414815_SNP [dm3] 3L_11421715_SNP [dm6]	T	C	9.316e^-5	0.307	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3895185	2L_3895185_SNP [dm3] 2L_3895185_SNP [dm6]	G	T	9.317e^-5	0.307	INTRON capu	TF binding site mE1_TFBS_kn
2R	9632106	2R_9632106_SNP [dm3] 2R_13744601_SNP [dm6]	A	T	9.329e^-5	0.307	INTRON fas
3R	13775578	3R_13775578_SNP [dm3] 3R_17949856_SNP [dm6]	T	G	9.333e^-5	0.307	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	17519398	2R_17519398_SNP [dm3] 2R_21631893_SNP [dm6]	T	C	9.355e^-5	0.307	UPSTREAM CG15674 DOWNSTREAM mahj EXON CR42547
2L	19908899	2L_19908899_DEL [dm3] 2L_19908899_DEL [dm6]	TCATT	T	9.371e^-5	0.307	INTRON sick	TF binding site mE1_TFBS_chinmo
2L	19921170	2L_19921170_SNP [dm3] 2L_19921170_SNP [dm6]	T	A	9.393e^-5	0.307	INTRON sick EXON CR43828
2L	9304583	2L_9304583_SNP [dm3] 2L_9304583_SNP [dm6]	T	C	9.413e^-5	0.307	EXON CR42844
2R	14152482	2R_14152482_SNP [dm3] 2R_18264977_SNP [dm6]	C	T	9.422e^-5	0.307	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17796368	3L_17796368_SNP [dm3] 3L_17803268_SNP [dm6]	A	G	9.425e^-5	0.307	SYNONYMOUS_CODING CG5589 UPSTREAM NUCB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2351217	2L_2351217_SNP [dm3] 2L_2351217_SNP [dm6]	A	G	9.469e^-5	0.307	INTRON CG9967 & 1 other
X	17207965	X_17207965_SNP [dm3] X_17313932_SNP [dm6]	G	T	9.472e^-5	0.307	UPSTREAM B-H2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	18295612	3L_18295612_SNP [dm3] 3L_18302512_SNP [dm6]	T	C	9.492e^-5	0.307	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	7333551	X_7333551_SNP [dm3] X_7439518_SNP [dm6]	A	C	9.496e^-5	0.307	INTERGENIC
2L	9198701	2L_9198701_SNP [dm3] 2L_9198701_SNP [dm6]	C	T	9.518e^-5	0.307	INTRON tai
2L	8217244	2L_8217244_SNP [dm3] 2L_8217244_SNP [dm6]	C	T	9.521e^-5	0.307	SYNONYMOUS_CODING CG8292 DOWNSTREAM CG8349 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12225947	2R_12225947_SNP [dm3] 2R_16338442_SNP [dm6]	T	C	9.538e^-5	0.307	UPSTREAM Hmgs INTRON Hmgs	TF binding site mE1_TFBS_Trl
3L	7933172	3L_7933172_INS [dm3] 3L_7940072_INS [dm6]	A	ATG	9.540e^-5	0.307	INTERGENIC
2R	13734563	2R_13734563_SNP [dm3] 2R_17847058_SNP [dm6]	G	A	9.548e^-5	0.307	UTR_5_PRIME olf186-M INTRON olf186-F	TF binding site mE1_TFBS_Trl
2L	9200253	2L_9200253_SNP [dm3] 2L_9200253_SNP [dm6]	C	T	9.622e^-5	0.309	INTRON tai
2L	3997316	2L_3997316_INS [dm3] 2L_3997316_INS [dm6]	T	TTGTTGTAT	9.656e^-5	0.309	INTERGENIC
2L	3895173	2L_3895173_SNP [dm3] 2L_3895173_SNP [dm6]	G	T	9.661e^-5	0.309	INTRON capu	TF binding site mE1_TFBS_kn
3L	16350759	3L_16350759_SNP [dm3] 3L_16357659_SNP [dm6]	A	G	9.764e^-5	0.312	INTRON CG45057
3L	9234679	3L_9234679_SNP [dm3] 3L_9241579_SNP [dm6]	A	T	9.770e^-5	0.312	INTERGENIC
X	16545015	X_16545015_DEL [dm3] X_16650982_DEL [dm6]	ATTCAAGATAAAATTAACCT...	A	9.796e^-5	0.312	UPSTREAM CG32573 & 1 other DOWNSTREAM mthl1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2R	10153979	2R_10153979_SNP [dm3] 2R_14266474_SNP [dm6]	A	G	9.829e^-5	0.312	INTRON CG8547
2L	9123552	2L_9123552_SNP [dm3] 2L_9123552_SNP [dm6]	A	C	9.866e^-5	0.312	UPSTREAM CR44615 INTERGENIC
2R	17819140	2R_17819140_SNP [dm3] 2R_21931635_SNP [dm6]	T	C	9.866e^-5	0.312	INTRON Fili
3R	8425501	3R_8425501_SNP [dm3] 3R_12599779_SNP [dm6]	A	T	9.871e^-5	0.312	INTERGENIC
2L	17060807	2L_17060807_SNP [dm3] 2L_17060807_SNP [dm6]	G	A	9.875e^-5	0.312	INTERGENIC
2R	7463873	2R_7463873_SNP [dm3] 2R_11576368_SNP [dm6]	G	T	9.882e^-5	0.312	INTERGENIC
2L	20260743	2L_20260743_SNP [dm3] 2L_20260743_SNP [dm6]	C	T	9.953e^-5	0.313	INTERGENIC
X	6091443	X_6091443_SNP [dm3] X_6197410_SNP [dm6]	T	A	9.970e^-5	0.313	NON_SYNONYMOUS_CODING CG32751 UPSTREAM CG32750
2L	19313601	2L_19313601_SNP [dm3] 2L_19313601_SNP [dm6]	C	T	9.975e^-5	0.313	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9417609	2L_9417609_SNP [dm3] 2L_9417609_SNP [dm6]	G	T	1.003e^-4	0.314	INTRON Mco1
2L	7533289	2L_7533289_SNP [dm3] 2L_7533289_SNP [dm6]	A	G	1.003e^-4	0.314	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11387355	3R_11387355_SNP [dm3] 3R_15561633_SNP [dm6]	G	A	1.005e^-4	0.314	INTERGENIC
2R	19320190	2R_19320190_SNP [dm3] 2R_23432667_SNP [dm6]	T	G	1.008e^-4	0.314	UPSTREAM CG9815 INTRON CG9815
2R	14359929	2R_14359929_SNP [dm3] 2R_18472424_SNP [dm6]	T	G	1.014e^-4	0.316	INTRON CG30116
2L	9253367	2L_9253367_SNP [dm3] 2L_9253367_SNP [dm6]	A	T	1.016e^-4	0.316	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	6949149	2R_6949149_SNP [dm3] 2R_11061644_SNP [dm6]	T	G	1.018e^-4	0.316	INTRON luna
2R	16322569	2R_16322569_SNP [dm3] 2R_20435064_SNP [dm6]	A	C	1.022e^-4	0.316	INTRON CG12484
X	21283843	X_21283843_INS [dm3] X_21412816_INS [dm6]	T	TATATT	1.027e^-4	0.317	INTERGENIC
2L	9123580	2L_9123580_SNP [dm3] 2L_9123580_SNP [dm6]	A	C	1.027e^-4	0.317	UPSTREAM CR44615 INTERGENIC
3R	25800573	3R_25800573_SNP [dm3] 3R_29974851_SNP [dm6]	A	G	1.028e^-4	0.317	INTERGENIC
3L	7844736	3L_7844736_SNP [dm3] 3L_7851636_SNP [dm6]	G	A	1.030e^-4	0.317	INTRON Pdp1	regulatory region REDfly_CRMs
X	9986033	X_9986033_SNP [dm3] X_10092000_SNP [dm6]	A	T	1.037e^-4	0.318	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7044476	2L_7044476_SNP [dm3] 2L_7044476_SNP [dm6]	T	C	1.038e^-4	0.318	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8414105	X_8414105_SNP [dm3] X_8520072_SNP [dm6]	G	C	1.039e^-4	0.318	INTRON Nrg
2R	9660586	2R_9660586_DEL [dm3] 2R_13773081_DEL [dm6]	ATA	A	1.043e^-4	0.318	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
3L	19651096	3L_19651096_SNP [dm3] 3L_19657996_SNP [dm6]	T	C	1.044e^-4	0.318	INTRON tey
2L	2344135	2L_2344135_SNP [dm3] 2L_2344135_SNP [dm6]	G	C	1.044e^-4	0.318	INTRON CG9967 & 1 other
2R	10597880	2R_10597880_SNP [dm3] 2R_14710375_SNP [dm6]	G	A	1.049e^-4	0.319	INTRON mspo
2L	17060671	2L_17060671_SNP [dm3] 2L_17060671_SNP [dm6]	G	A	1.050e^-4	0.319	INTERGENIC
2L	17937494	2L_17937494_SNP [dm3] 2L_17937494_SNP [dm6]	C	G	1.052e^-4	0.319	INTERGENIC
2L	3895200	2L_3895200_INS [dm3] 2L_3895200_INS [dm6]	A	ACT	1.054e^-4	0.319	INTRON capu	TF binding site mE1_TFBS_kn
2L	965476	2L_965476_SNP [dm3] 2L_965476_SNP [dm6]	C	G	1.057e^-4	0.319	INTERGENIC
2L	19907140	2L_19907140_SNP [dm3] 2L_19907140_SNP [dm6]	G	C	1.057e^-4	0.319	INTRON sick
2R	11838897	2R_11838897_SNP [dm3] 2R_15951392_SNP [dm6]	G	A	1.059e^-4	0.319	SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck DOWNSTREAM Strn-Mlck
2L	11710276	2L_11710276_SNP [dm3] 2L_11710276_SNP [dm6]	G	T	1.062e^-4	0.319	INTERGENIC
2L	3897665	2L_3897665_DEL [dm3] 2L_3897665_DEL [dm6]	CATA	C	1.070e^-4	0.321	INTRON capu
2L	3897670	2L_3897670_SNP [dm3] 2L_3897670_SNP [dm6]	C	A	1.070e^-4	0.321	INTRON capu
2R	15272659	2R_15272659_SNP [dm3] 2R_19385154_SNP [dm6]	A	C	1.074e^-4	0.321	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
X	5694025	X_5694025_SNP [dm3] X_5799992_SNP [dm6]	G	T	1.075e^-4	0.321	INTERGENIC
2R	17770758	2R_17770758_SNP [dm3] 2R_21883253_SNP [dm6]	T	A	1.079e^-4	0.321	UPSTREAM Fili & 1 other INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	7468307	2R_7468307_SNP [dm3] 2R_11580802_SNP [dm6]	C	T	1.080e^-4	0.321	SYNONYMOUS_CODING tou UTR_5_PRIME tou	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4271986	2L_4271986_SNP [dm3] 2L_4271986_SNP [dm6]	G	A	1.086e^-4	0.322	INTERGENIC
X	17208110	X_17208110_SNP [dm3] X_17314077_SNP [dm6]	A	G	1.087e^-4	0.322	UPSTREAM B-H2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	4378480	3L_4378480_SNP [dm3] 3L_4378480_SNP [dm6]	T	C	1.092e^-4	0.323	UPSTREAM CR44360 INTRON DopEcR
3L	6389926	3L_6389926_SNP [dm3] 3L_6396826_SNP [dm6]	T	C	1.093e^-4	0.323	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	17081741	2L_17081741_SNP [dm3] 2L_17081741_SNP [dm6]	G	A	1.096e^-4	0.323	INTERGENIC
2L	6002884	2L_6002884_SNP [dm3] 2L_6002884_SNP [dm6]	C	T	1.098e^-4	0.323	UTR_3_PRIME Tsp26A DOWNSTREAM Gal
2L	22422421	2L_22422421_SNP [dm3] 2L_22529689_SNP [dm6]	G	C	1.099e^-4	0.323	INTERGENIC
2R	17381198	2R_17381198_SNP [dm3] 2R_21493693_SNP [dm6]	C	T	1.100e^-4	0.323	INTRON Fkbp14	TF binding site BDTNP1_TFBS_sna
2L	2137798	2L_2137798_SNP [dm3] 2L_2137798_SNP [dm6]	T	C	1.107e^-4	0.325	DOWNSTREAM GlyP INTRON tho2
2L	3263773	2L_3263773_SNP [dm3] 2L_3263773_SNP [dm6]	C	G	1.109e^-4	0.325	DOWNSTREAM CR45706 INTERGENIC
2L	9202535	2L_9202535_SNP [dm3] 2L_9202535_SNP [dm6]	C	T	1.109e^-4	0.325	INTRON tai
2R	5971595	2R_5971595_SNP [dm3] 2R_10084090_SNP [dm6]	T	C	1.113e^-4	0.325	UTR_3_PRIME egr
2R	9211344	2R_9211344_SNP [dm3] 2R_13323839_SNP [dm6]	T	G	1.115e^-4	0.325	INTERGENIC
X	6090955	X_6090955_SNP [dm3] X_6196922_SNP [dm6]	C	T	1.120e^-4	0.326	UPSTREAM CG32750 INTRON CG32751
2R	10342223	2R_10342223_SNP [dm3] 2R_14454718_SNP [dm6]	A	G	1.120e^-4	0.326	INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	10711858	2R_10711858_SNP [dm3] 2R_14824353_SNP [dm6]	A	G	1.125e^-4	0.327	EXON CR45329
3R	16005076	3R_16005076_SNP [dm3] 3R_20179354_SNP [dm6]	T	A	1.130e^-4	0.327	INTERGENIC
2L	7872466	2L_7872466_SNP [dm3] 2L_7872466_SNP [dm6]	G	T	1.130e^-4	0.327	UPSTREAM tRNA:G3:28D & 1 other INTERGENIC
2L	18904006	2L_18904006_SNP [dm3] 2L_18904006_SNP [dm6]	A	G	1.132e^-4	0.327	INTERGENIC
2R	10160806	2R_10160806_SNP [dm3] 2R_14273301_SNP [dm6]	C	T	1.136e^-4	0.327	NON_SYNONYMOUS_CODING conv
2R	9277621	2R_9277621_SNP [dm3] 2R_13390116_SNP [dm6]	A	T	1.137e^-4	0.327	NON_SYNONYMOUS_CODING CG43691
2R	7467531	2R_7467531_SNP [dm3] 2R_11580026_SNP [dm6]	A	T	1.138e^-4	0.327	INTRON tou
2R	7467537	2R_7467537_SNP [dm3] 2R_11580032_SNP [dm6]	T	A	1.138e^-4	0.327	INTRON tou
X	4224218	X_4224218_SNP [dm3] X_4330185_SNP [dm6]	G	T	1.139e^-4	0.327	UPSTREAM CG12693 INTRON norpA
2R	16156336	2R_16156336_SNP [dm3] 2R_20268831_SNP [dm6]	T	G	1.143e^-4	0.327	INTRON CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10532472	2R_10532472_INS [dm3] 2R_14644967_INS [dm6]	A	AAA	1.147e^-4	0.328	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4341262	3L_4341262_SNP [dm3] 3L_4341262_SNP [dm6]	C	T	1.151e^-4	0.328	INTRON Cip4
2R	12378565	2R_12378565_SNP [dm3] 2R_16491060_SNP [dm6]	T	G	1.152e^-4	0.328	UPSTREAM S-Lap8 INTERGENIC
3R	12948734	3R_12948734_SNP [dm3] 3R_17123012_SNP [dm6]	G	T	1.152e^-4	0.328	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
2R	10154658	2R_10154658_SNP [dm3] 2R_14267153_SNP [dm6]	A	G	1.155e^-4	0.328	INTRON CG8547	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9636499	2R_9636499_SNP [dm3] 2R_13748994_SNP [dm6]	C	T	1.155e^-4	0.328	UTR_3_PRIME fas
2L	4661304	2L_4661304_SNP [dm3] 2L_4661304_SNP [dm6]	C	T	1.156e^-4	0.328	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3591137	3L_3591137_SNP [dm3] 3L_3591137_SNP [dm6]	T	C	1.158e^-4	0.328	INTRON Eip63E
2L	2265804	2L_2265804_SNP [dm3] 2L_2265804_SNP [dm6]	C	T	1.161e^-4	0.328	UPSTREAM CG34049 INTERGENIC
2L	2090630	2L_2090630_SNP [dm3] 2L_2090630_SNP [dm6]	A	T	1.166e^-4	0.329	INTRON dpr3
2R	7315395	2R_7315395_SNP [dm3] 2R_11427890_SNP [dm6]	A	G	1.168e^-4	0.329	UPSTREAM Drip INTRON Drip
3R	22660904	3R_22660904_SNP [dm3] 3R_26835182_SNP [dm6]	A	G	1.170e^-4	0.329	INTRON Tl
2R	9631977	2R_9631977_SNP [dm3] 2R_13744472_SNP [dm6]	T	C	1.170e^-4	0.329	INTRON fas
2R	11852285	2R_11852285_SNP [dm3] 2R_15964780_SNP [dm6]	T	C	1.174e^-4	0.329	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6063363	2R_6063363_SNP [dm3] 2R_10175858_SNP [dm6]	A	T	1.175e^-4	0.329	INTRON KCNQ
2R	9632088	2R_9632088_INS [dm3] 2R_13744583_INS [dm6]	T	TT	1.177e^-4	0.329	INTRON fas
2L	4262450	2L_4262450_SNP [dm3] 2L_4262450_SNP [dm6]	C	A	1.180e^-4	0.329	INTERGENIC
3L	17999169	3L_17999169_SNP [dm3] 3L_18006069_SNP [dm6]	T	A	1.182e^-4	0.329	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18597169	2L_18597169_SNP [dm3] 2L_18597169_SNP [dm6]	C	A	1.184e^-4	0.33	UPSTREAM amos INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7467577	2R_7467577_SNP [dm3] 2R_11580072_SNP [dm6]	G	T	1.189e^-4	0.33	SYNONYMOUS_CODING tou
3L	10043838	3L_10043838_SNP [dm3] 3L_10050738_SNP [dm6]	C	T	1.192e^-4	0.331	INTRON dpr6
2R	13141080	2R_13141080_SNP [dm3] 2R_17253575_SNP [dm6]	A	G	1.195e^-4	0.331	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi
2R	15059588	2R_15059588_SNP [dm3] 2R_19172083_SNP [dm6]	G	A	1.197e^-4	0.331	INTRON CG10737
2L	8321174	2L_8321174_SNP [dm3] 2L_8321174_SNP [dm6]	G	A	1.202e^-4	0.331	UTR_3_PRIME CG7787 DOWNSTREAM CG7781	TF binding site mE1_TFBS_ttk
3L	8599381	3L_8599381_SNP [dm3] 3L_8606281_SNP [dm6]	G	C	1.202e^-4	0.331	INTRON CG6282
X	21283710	X_21283710_INS [dm3] X_21412683_INS [dm6]	G	GTAACCATGG	1.202e^-4	0.331	INTERGENIC
X	11164117	X_11164117_SNP [dm3] X_11270084_SNP [dm6]	T	C	1.206e^-4	0.332	INTRON CG44422
2L	18281103	2L_18281103_SNP [dm3] 2L_18281103_SNP [dm6]	A	T	1.209e^-4	0.332	INTERGENIC
X	4216452	X_4216452_SNP [dm3] X_4322419_SNP [dm6]	T	A	1.213e^-4	0.332	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
X	16304586	X_16304586_SNP [dm3] X_16410553_SNP [dm6]	A	G	1.214e^-4	0.332	SYNONYMOUS_CODING CG4301
2L	19907271	2L_19907271_SNP [dm3] 2L_19907271_SNP [dm6]	A	T	1.214e^-4	0.332	INTRON sick
3L	12312304	3L_12312304_SNP [dm3] 3L_12319204_SNP [dm6]	T	C	1.218e^-4	0.333	INTERGENIC
X	21054801	X_21054801_SNP [dm3] X_21183774_SNP [dm6]	G	A	1.220e^-4	0.333	INTERGENIC
2L	8396799	2L_8396799_SNP [dm3] 2L_8396799_SNP [dm6]	G	T	1.230e^-4	0.335	SYNONYMOUS_CODING CG13385 UPSTREAM Peritrophin-15a	TF binding site mE1_TFBS_cad
2L	7775242	2L_7775242_SNP [dm3] 2L_7775242_SNP [dm6]	A	C	1.231e^-4	0.335	DOWNSTREAM CG7179 & 1 other INTERGENIC
3R	14345446	3R_14345446_SNP [dm3] 3R_18519724_SNP [dm6]	T	G	1.237e^-4	0.335	INTRON fru
2R	10308691	2R_10308691_SNP [dm3] 2R_14421186_SNP [dm6]	C	T	1.238e^-4	0.335	NON_SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	13095744	2R_13095744_SNP [dm3] 2R_17208239_SNP [dm6]	A	G	1.239e^-4	0.335	INTERGENIC
2R	9347993	2R_9347993_SNP [dm3] 2R_13460488_SNP [dm6]	C	A	1.241e^-4	0.335	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5048962	X_5048962_SNP [dm3] X_5154929_SNP [dm6]	T	A	1.242e^-4	0.335	INTRON rg & 1 other
2R	7483123	2R_7483123_SNP [dm3] 2R_11595618_SNP [dm6]	T	C	1.243e^-4	0.335	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15620180	3R_15620180_SNP [dm3] 3R_19794458_SNP [dm6]	C	G	1.245e^-4	0.335	DOWNSTREAM bnl INTRON bnl
2L	4717169	2L_4717169_INS [dm3] 2L_4717169_INS [dm6]	TT	AGAC	1.246e^-4	0.335	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11474651	2L_11474651_INS [dm3] 2L_11474651_INS [dm6]	A	AA	1.247e^-4	0.335	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA
2L	2307072	2L_2307072_SNP [dm3] 2L_2307072_SNP [dm6]	G	C	1.251e^-4	0.335	UPSTREAM CG16995 INTERGENIC
2L	10630373	2L_10630373_SNP [dm3] 2L_10630373_SNP [dm6]	G	A	1.254e^-4	0.335	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19320183	2R_19320183_SNP [dm3] 2R_23432660_SNP [dm6]	A	T	1.254e^-4	0.335	UPSTREAM CG9815 INTRON CG9815
3L	21094572	3L_21094572_SNP [dm3] 3L_21101472_SNP [dm6]	C	T	1.256e^-4	0.335	INTRON ko	regulatory region REDfly_CRMs
2L	2685255	2L_2685255_SNP [dm3] 2L_2685255_SNP [dm6]	T	C	1.262e^-4	0.335	INTRON CG31690
3R	7748542	3R_7748542_SNP [dm3] 3R_11922820_SNP [dm6]	A	G	1.262e^-4	0.335	INTRON Cad87A
3L	21153405	3L_21153405_SNP [dm3] 3L_21160305_SNP [dm6]	C	T	1.264e^-4	0.335	INTRON Ac78C
2L	9453345	2L_9453345_SNP [dm3] 2L_9453345_SNP [dm6]	G	T	1.265e^-4	0.335	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2344885	3L_2344885_SNP [dm3] 3L_2344885_SNP [dm6]	G	A	1.267e^-4	0.335	UTR_3_PRIME MsR1
2L	4320014	2L_4320014_SNP [dm3] 2L_4320014_SNP [dm6]	T	C	1.267e^-4	0.335	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25461273	3R_25461273_DEL [dm3] 3R_29635551_DEL [dm6]	TGTGT	CTC	1.272e^-4	0.336	INTRON Dop1R2
2L	7895339	2L_7895339_SNP [dm3] 2L_7895339_SNP [dm6]	A	G	1.276e^-4	0.336	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18295617	3L_18295617_SNP [dm3] 3L_18302517_SNP [dm6]	T	A	1.276e^-4	0.336	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	20082525	3L_20082525_SNP [dm3] 3L_20089425_SNP [dm6]	T	G	1.284e^-4	0.337	UPSTREAM sNPF-R INTERGENIC
2L	9260695	2L_9260695_SNP [dm3] 2L_9260695_SNP [dm6]	G	C	1.287e^-4	0.337	INTRON Ggamma30A
2L	9196747	2L_9196747_SNP [dm3] 2L_9196747_SNP [dm6]	A	G	1.289e^-4	0.337	INTRON tai
3L	3021299	3L_3021299_SNP [dm3] 3L_3021299_SNP [dm6]	T	A	1.294e^-4	0.337	INTERGENIC
X	15025393	X_15025393_SNP [dm3] X_15131360_SNP [dm6]	T	A	1.294e^-4	0.337	INTRON drd
3R	21340430	3R_21340430_SNP [dm3] 3R_25514708_SNP [dm6]	C	T	1.298e^-4	0.337	INTERGENIC
X	4223161	X_4223161_SNP [dm3] X_4329128_SNP [dm6]	T	C	1.299e^-4	0.337	INTRON norpA & 1 other
2R	10153763	2R_10153763_SNP [dm3] 2R_14266258_SNP [dm6]	A	G	1.300e^-4	0.337	INTRON CG8547
X	12377230	X_12377230_SNP [dm3] X_12483197_SNP [dm6]	A	T	1.300e^-4	0.337	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13630275	3R_13630275_SNP [dm3] 3R_17804553_SNP [dm6]	A	G	1.302e^-4	0.337	SYNONYMOUS_CODING CG17802	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7745463	3R_7745463_SNP [dm3] 3R_11919741_SNP [dm6]	G	A	1.303e^-4	0.337	INTRON Cad87A
2R	10797256	2R_10797256_SNP [dm3] 2R_14909751_SNP [dm6]	A	G	1.303e^-4	0.337	INTRON CG10249
2R	10532301	2R_10532301_SNP [dm3] 2R_14644796_SNP [dm6]	T	A	1.304e^-4	0.337	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9290593	2R_9290593_SNP [dm3] 2R_13403088_SNP [dm6]	C	A	1.304e^-4	0.337	INTERGENIC
2R	801219	2R_801219_SNP [dm3] 2R_4913714_SNP [dm6]	A	C	1.309e^-4	0.338	INTERGENIC	transposable element FlyBase
2R	16327657	2R_16327657_SNP [dm3] 2R_20440152_SNP [dm6]	A	G	1.322e^-4	0.34	INTRON CG12484
2R	6868333	2R_6868333_DEL [dm3] 2R_10980828_DEL [dm6]	TAC	T	1.322e^-4	0.34	UTR_3_PRIME luna
2R	19093077	2R_19093077_SNP [dm3] 2R_23205554_SNP [dm6]	G	T	1.325e^-4	0.34	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
2L	12142383	2L_12142383_SNP [dm3] 2L_12142383_SNP [dm6]	A	T	1.327e^-4	0.34	UPSTREAM CG31760 INTERGENIC
3R	19546728	3R_19546728_SNP [dm3] 3R_23721006_SNP [dm6]	T	C	1.328e^-4	0.34	NON_SYNONYMOUS_CODING CG10232
3L	3266601	3L_3266601_SNP [dm3] 3L_3266601_SNP [dm6]	C	T	1.331e^-4	0.34	START_GAINED ckd UTR_5_PRIME ckd	TF binding site BDTNP1_TFBS_dl
X	10912108	X_10912108_SNP [dm3] X_11018075_SNP [dm6]	T	C	1.332e^-4	0.34	INTRON CG42339	TF binding site BDTNP1_TFBS_dl
3R	14122915	3R_14122915_SNP [dm3] 3R_18297193_SNP [dm6]	G	A	1.332e^-4	0.34	INTRON l_3_05822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5621686	2L_5621686_SNP [dm3] 2L_5621686_SNP [dm6]	C	T	1.334e^-4	0.34	NON_SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_chinmo
2R	19359288	2R_19359288_SNP [dm3] 2R_23471765_SNP [dm6]	A	T	1.335e^-4	0.34	UTR_5_PRIME Or59b DOWNSTREAM Or59c INTRON CG43795
3R	26802313	3R_26802313_SNP [dm3] 3R_30976591_SNP [dm6]	G	T	1.341e^-4	0.34	INTRON 5-HT7
2L	13615655	2L_13615655_SNP [dm3] 2L_13615655_SNP [dm6]	A	G	1.342e^-4	0.34	INTRON kuz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12280044	2R_12280044_SNP [dm3] 2R_16392539_SNP [dm6]	G	A	1.343e^-4	0.34	INTRON Sema-2b	TF binding site mE1_TFBS_inv
2L	6756442	2L_6756442_SNP [dm3] 2L_6756442_SNP [dm6]	A	G	1.347e^-4	0.34	DOWNSTREAM CG11221 INTERGENIC
3L	11621306	3L_11621306_SNP [dm3] 3L_11628206_SNP [dm6]	T	C	1.347e^-4	0.34	UPSTREAM CG18815 DOWNSTREAM PCID2 INTRON CG18815	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25403380	3R_25403380_SNP [dm3] 3R_29577658_SNP [dm6]	T	A	1.348e^-4	0.34	INTERGENIC
3L	18228761	3L_18228761_SNP [dm3] 3L_18235661_SNP [dm6]	C	T	1.352e^-4	0.341	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13310810	3L_13310810_SNP [dm3] 3L_13317710_SNP [dm6]	T	C	1.354e^-4	0.341	INTERGENIC
X	12052975	X_12052975_SNP [dm3] X_12158942_SNP [dm6]	C	A	1.354e^-4	0.341	INTRON Ten-a
X	12045411	X_12045411_SNP [dm3] X_12151378_SNP [dm6]	T	G	1.358e^-4	0.341	INTRON Ten-a
2R	10557891	2R_10557891_SNP [dm3] 2R_14670386_SNP [dm6]	C	T	1.369e^-4	0.343	SYNONYMOUS_CODING CG12866 UTR_3_PRIME CG12866
2R	17181047	2R_17181047_SNP [dm3] 2R_21293542_SNP [dm6]	A	C	1.372e^-4	0.343	UTR_5_PRIME Sgf29 UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
X	8727028	X_8727028_SNP [dm3] X_8832995_SNP [dm6]	G	T	1.374e^-4	0.343	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13769737	2R_13769737_SNP [dm3] 2R_17882232_SNP [dm6]	C	T	1.376e^-4	0.343	UTR_5_PRIME CG30110 INTRON Elk
2L	2351183	2L_2351183_SNP [dm3] 2L_2351183_SNP [dm6]	A	T	1.377e^-4	0.343	INTRON CG9967 & 1 other
2R	17062887	2R_17062887_SNP [dm3] 2R_21175382_SNP [dm6]	C	T	1.379e^-4	0.343	UTR_5_PRIME Pu DOWNSTREAM Xpd	TF binding site mE1_TFBS_Trl
2L	22625332	2L_22625332_DEL [dm3] 2L_22732600_DEL [dm6]	TT	T	1.379e^-4	0.343	INTRON CG40006
2L	15826838	2L_15826838_SNP [dm3] 2L_15826838_SNP [dm6]	T	A	1.385e^-4	0.344	INTERGENIC
2R	17775929	2R_17775929_SNP [dm3] 2R_21888424_SNP [dm6]	G	A	1.388e^-4	0.344	INTRON Fili
2L	13231409	2L_13231409_SNP [dm3] 2L_13231409_SNP [dm6]	A	T	1.392e^-4	0.345	UPSTREAM Prosalpha6T DOWNSTREAM CG16815 INTERGENIC	TF binding site mE1_TFBS_cad
X	21283856	X_21283856_SNP [dm3] X_21412829_SNP [dm6]	A	T	1.393e^-4	0.345	INTERGENIC
2R	10599699	2R_10599699_SNP [dm3] 2R_14712194_SNP [dm6]	T	G	1.397e^-4	0.345	INTRON mspo
3L	10748851	3L_10748851_SNP [dm3] 3L_10755751_SNP [dm6]	A	C	1.399e^-4	0.345	INTERGENIC
2R	15813512	2R_15813512_SNP [dm3] 2R_19926007_SNP [dm6]	G	A	1.408e^-4	0.347	UPSTREAM CR44626 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	13775620	3R_13775620_SNP [dm3] 3R_17949898_SNP [dm6]	T	A	1.409e^-4	0.347	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	11055507	2R_11055507_SNP [dm3] 2R_15168002_SNP [dm6]	T	A	1.416e^-4	0.348	INTRON igl
2R	19953016	2R_19953016_SNP [dm3] 2R_24065493_SNP [dm6]	G	A	1.423e^-4	0.349	DOWNSTREAM yki & 1 other INTERGENIC
3R	15628511	3R_15628511_INS [dm3] 3R_19802789_INS [dm6]	T	TT	1.424e^-4	0.349	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13662936	X_13662936_SNP [dm3] X_13768903_SNP [dm6]	G	A	1.424e^-4	0.349	SYNONYMOUS_CODING rdgB	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16391312	2L_16391312_SNP [dm3] 2L_16391312_SNP [dm6]	C	T	1.428e^-4	0.349	INTERGENIC
X	17728650	X_17728650_SNP [dm3] X_17834617_SNP [dm6]	C	A	1.429e^-4	0.349	INTRON CG6398	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	10155724	2R_10155724_SNP [dm3] 2R_14268219_SNP [dm6]	A	C	1.432e^-4	0.349	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9226464	2R_9226464_SNP [dm3] 2R_13338959_SNP [dm6]	G	A	1.435e^-4	0.349	INTRON CR44206	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
X	17250853	X_17250853_SNP [dm3] X_17356820_SNP [dm6]	G	T	1.437e^-4	0.349	INTERGENIC
3L	16810589	3L_16810589_SNP [dm3] 3L_16817489_SNP [dm6]	A	T	1.443e^-4	0.349	INTRON nudC & 1 other
2L	15826834	2L_15826834_SNP [dm3] 2L_15826834_SNP [dm6]	T	C	1.443e^-4	0.349	INTERGENIC
2R	9211731	2R_9211731_SNP [dm3] 2R_13324226_SNP [dm6]	A	T	1.443e^-4	0.349	INTERGENIC
3L	1237137	3L_1237137_SNP [dm3] 3L_1237137_SNP [dm6]	G	T	1.445e^-4	0.349	UTR_3_PRIME CG9192 INTRON CG9194
2L	3401629	2L_3401629_SNP [dm3] 2L_3401629_SNP [dm6]	T	G	1.445e^-4	0.349	INTERGENIC
3L	2927449	3L_2927449_SNP [dm3] 3L_2927449_SNP [dm6]	T	A	1.451e^-4	0.35	INTRON Shab
3R	26937200	3R_26937200_SNP [dm3] 3R_31111478_SNP [dm6]	A	C	1.459e^-4	0.351	INTERGENIC
2R	15220811	2R_15220811_SNP [dm3] 2R_19333306_SNP [dm6]	C	G	1.462e^-4	0.351	INTRON Rgk1 & 1 other
2R	6753881	2R_6753881_SNP [dm3] 2R_10866376_SNP [dm6]	G	T	1.462e^-4	0.351	INTRON CG30015
X	3927755	X_3927755_SNP [dm3] X_4033722_SNP [dm6]	T	A	1.462e^-4	0.351	INTERGENIC
X	21283751	X_21283751_SNP [dm3] X_21412724_SNP [dm6]	C	T	1.464e^-4	0.351	INTERGENIC
X	21283755	X_21283755_SNP [dm3] X_21412728_SNP [dm6]	T	A	1.464e^-4	0.351	INTERGENIC
2L	18235687	2L_18235687_SNP [dm3] 2L_18235687_SNP [dm6]	C	A	1.466e^-4	0.351	INTRON CG42750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	10151361	2R_10151361_SNP [dm3] 2R_14263856_SNP [dm6]	A	C	1.471e^-4	0.351	SPLICE_SITE_REGION CG8547 INTRON CG8547	TF binding site mE1_TFBS_cad
2L	3895169	2L_3895169_SNP [dm3] 2L_3895169_SNP [dm6]	A	T	1.472e^-4	0.351	INTRON capu	TF binding site mE1_TFBS_kn
2L	3997230	2L_3997230_DEL [dm3] 2L_3997230_DEL [dm6]	TCCAATTCTA	T	1.477e^-4	0.352	INTERGENIC
2R	9253357	2R_9253357_SNP [dm3] 2R_13365852_SNP [dm6]	C	A	1.480e^-4	0.352	INTERGENIC	TF binding site mE1_TFBS_cad
X	4236919	X_4236919_SNP [dm3] X_4342886_SNP [dm6]	A	G	1.486e^-4	0.353	INTRON norpA
3L	1323935	3L_1323935_SNP [dm3] 3L_1323935_SNP [dm6]	T	A	1.495e^-4	0.353	UPSTREAM Myo61F INTRON Myo61F EXON CR45166
3R	14660188	3R_14660188_SNP [dm3] 3R_18834466_SNP [dm6]	T	A	1.495e^-4	0.353	INTRON CG18208
2L	19910773	2L_19910773_SNP [dm3] 2L_19910773_SNP [dm6]	G	A	1.495e^-4	0.353	INTRON sick EXON CR43097
X	9584618	X_9584618_SNP [dm3] X_9690585_SNP [dm6]	C	T	1.496e^-4	0.353	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	8146763	2L_8146763_SNP [dm3] 2L_8146763_SNP [dm6]	C	T	1.497e^-4	0.353	UPSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10700192	2R_10700192_SNP [dm3] 2R_14812687_SNP [dm6]	G	C	1.498e^-4	0.353	INTERGENIC	regulatory region REDfly_CRMs
2L	19716262	2L_19716262_SNP [dm3] 2L_19716262_SNP [dm6]	G	T	1.498e^-4	0.353	INTRON Lar
2L	3511937	2L_3511937_SNP [dm3] 2L_3511937_SNP [dm6]	G	T	1.500e^-4	0.353	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10166348	3L_10166348_SNP [dm3] 3L_10173248_SNP [dm6]	T	A	1.501e^-4	0.353	INTRON dpr10
2L	9198999	2L_9198999_SNP [dm3] 2L_9198999_SNP [dm6]	A	G	1.506e^-4	0.353	INTRON tai
2R	17619221	2R_17619221_SNP [dm3] 2R_21731716_SNP [dm6]	T	G	1.506e^-4	0.353	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17070070	2L_17070070_SNP [dm3] 2L_17070070_SNP [dm6]	G	A	1.507e^-4	0.353	INTERGENIC
3L	18295609	3L_18295609_SNP [dm3] 3L_18302509_SNP [dm6]	A	G	1.513e^-4	0.353	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	10648806	2R_10648806_SNP [dm3] 2R_14761301_SNP [dm6]	G	A	1.518e^-4	0.353	UTR_3_PRIME Spred
2L	16391242	2L_16391242_SNP [dm3] 2L_16391242_SNP [dm6]	T	C	1.519e^-4	0.353	INTERGENIC
2R	17773559	2R_17773559_SNP [dm3] 2R_21886054_SNP [dm6]	C	G	1.523e^-4	0.353	INTRON Fili
3R	8444345	3R_8444345_SNP [dm3] 3R_12618623_SNP [dm6]	A	T	1.524e^-4	0.353	DOWNSTREAM CR44942 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20864286	2L_20864286_SNP [dm3] 2L_20864286_SNP [dm6]	G	A	1.524e^-4	0.353	UPSTREAM CR9337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb
2L	19907142	2L_19907142_SNP [dm3] 2L_19907142_SNP [dm6]	A	G	1.524e^-4	0.353	INTRON sick
2R	9635443	2R_9635443_SNP [dm3] 2R_13747938_SNP [dm6]	G	A	1.525e^-4	0.353	UTR_3_PRIME fas
3L	9356600	3L_9356600_SNP [dm3] 3L_9363500_SNP [dm6]	A	G	1.526e^-4	0.353	SYNONYMOUS_CODING Klp67A UPSTREAM CG4447 DOWNSTREAM CG34456
X	5097610	X_5097610_INS [dm3] X_5203577_INS [dm6]	T	TT	1.533e^-4	0.353	INTRON CG15465 & 1 other
2R	10748008	2R_10748008_SNP [dm3] 2R_14860503_SNP [dm6]	A	G	1.536e^-4	0.353	SYNONYMOUS_CODING U3-55K DOWNSTREAM Inr-a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	11055979	2R_11055979_SNP [dm3] 2R_15168474_SNP [dm6]	T	G	1.536e^-4	0.353	INTRON igl
2R	18700210	2R_18700210_SNP [dm3] 2R_22812705_SNP [dm6]	C	A	1.536e^-4	0.353	SPLICE_SITE_REGION stl INTRON stl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5722491	2L_5722491_SNP [dm3] 2L_5722491_SNP [dm6]	T	A	1.539e^-4	0.353	NON_SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18051382	2R_18051382_SNP [dm3] 2R_22163877_SNP [dm6]	T	A	1.539e^-4	0.353	NON_SYNONYMOUS_CODING CG34206 INTRON a
X	8172387	X_8172387_SNP [dm3] X_8278354_SNP [dm6]	C	T	1.540e^-4	0.353	UTR_3_PRIME nAChRalpha3
3L	7820874	3L_7820874_SNP [dm3] 3L_7827774_SNP [dm6]	T	A	1.540e^-4	0.353	UTR_5_PRIME Pdp1 INTRON Pdp1
2R	11278786	2R_11278786_SNP [dm3] 2R_15391281_SNP [dm6]	T	C	1.542e^-4	0.353	INTERGENIC
X	9745943	X_9745943_SNP [dm3] X_9851910_SNP [dm6]	T	C	1.547e^-4	0.353	UTR_3_PRIME CG32698
3R	7745447	3R_7745447_SNP [dm3] 3R_11919725_SNP [dm6]	A	G	1.552e^-4	0.353	INTRON Cad87A
3L	20086340	3L_20086340_SNP [dm3] 3L_20093240_SNP [dm6]	G	A	1.553e^-4	0.353	INTERGENIC
X	17885434	X_17885434_SNP [dm3] X_17991401_SNP [dm6]	C	T	1.554e^-4	0.353	UPSTREAM Sh INTRON Sh	TF binding site mE1_TFBS_chinmo
2R	10548359	2R_10548359_SNP [dm3] 2R_14660854_SNP [dm6]	A	G	1.555e^-4	0.353	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18744072	3L_18744072_SNP [dm3] 3L_18750972_SNP [dm6]	C	G	1.555e^-4	0.353	UTR_3_PRIME ftz-f1 DOWNSTREAM Atg3 & 1 other
2L	4374778	2L_4374778_SNP [dm3] 2L_4374778_SNP [dm6]	T	G	1.558e^-4	0.353	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	10508086	2R_10508086_SNP [dm3] 2R_14620581_SNP [dm6]	T	A	1.558e^-4	0.353	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	9253293	2L_9253293_SNP [dm3] 2L_9253293_SNP [dm6]	C	G	1.559e^-4	0.353	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	10145089	2L_10145089_SNP [dm3] 2L_10145089_SNP [dm6]	G	A	1.562e^-4	0.353	UTR_5_PRIME CG4839 INTRON CG44153
3L	3528311	3L_3528311_SNP [dm3] 3L_3528311_SNP [dm6]	A	G	1.567e^-4	0.354	INTRON Eip63E
2L	9226952	2L_9226952_SNP [dm3] 2L_9226952_SNP [dm6]	C	A	1.569e^-4	0.354	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10649594	3L_10649594_SNP [dm3] 3L_10656494_SNP [dm6]	C	T	1.571e^-4	0.354	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21585637	3L_21585637_SNP [dm3] 3L_21592537_SNP [dm6]	C	T	1.575e^-4	0.354	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26092247	3R_26092247_SNP [dm3] 3R_30266525_SNP [dm6]	C	A	1.575e^-4	0.354	INTERGENIC
2R	18059994	2R_18059994_DEL [dm3] 2R_22172489_DEL [dm6]	TTT	T	1.577e^-4	0.354	DOWNSTREAM CG3045 INTRON a
2L	9096347	2L_9096347_SNP [dm3] 2L_9096347_SNP [dm6]	T	C	1.586e^-4	0.355	INTERGENIC	TF binding site mE1_TFBS_sens
2R	20096422	2R_20096422_SNP [dm3] 2R_24208899_SNP [dm6]	C	T	1.587e^-4	0.355	UPSTREAM CG11406 INTERGENIC
2R	7484036	2R_7484036_SNP [dm3] 2R_11596531_SNP [dm6]	A	C	1.588e^-4	0.355	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3895202	2L_3895202_SNP [dm3] 2L_3895202_SNP [dm6]	C	T	1.590e^-4	0.355	INTRON capu	TF binding site mE1_TFBS_kn
2R	13541318	2R_13541318_SNP [dm3] 2R_17653813_SNP [dm6]	A	T	1.593e^-4	0.356	INTRON CCHa1-R
2L	10870330	2L_10870330_SNP [dm3] 2L_10870330_SNP [dm6]	A	T	1.597e^-4	0.356	NON_SYNONYMOUS_CODING CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_inv
X	12045414	X_12045414_SNP [dm3] X_12151381_SNP [dm6]	T	A	1.607e^-4	0.357	INTRON Ten-a
2R	10666534	2R_10666534_SNP [dm3] 2R_14779029_SNP [dm6]	G	A	1.607e^-4	0.357	INTRON kn
X	8414118	X_8414118_SNP [dm3] X_8520085_SNP [dm6]	C	A	1.607e^-4	0.357	INTRON Nrg
2L	10093718	2L_10093718_SNP [dm3] 2L_10093718_SNP [dm6]	T	G	1.609e^-4	0.357	UPSTREAM CG34109 INTRON CG44153
X	16540140	X_16540140_SNP [dm3] X_16646107_SNP [dm6]	G	A	1.614e^-4	0.357	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	19359000	2R_19359000_SNP [dm3] 2R_23471477_SNP [dm6]	C	G	1.614e^-4	0.357	SYNONYMOUS_CODING Or59b DOWNSTREAM Or59c INTRON CG43795
3R	25600872	3R_25600872_SNP [dm3] 3R_29775150_SNP [dm6]	C	T	1.624e^-4	0.359	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10935524	2R_10935524_SNP [dm3] 2R_15048019_SNP [dm6]	G	C	1.624e^-4	0.359	INTERGENIC
X	4561087	X_4561087_SNP [dm3] X_4667054_SNP [dm6]	C	G	1.627e^-4	0.359	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3L	5617182	3L_5617182_SNP [dm3] 3L_5624082_SNP [dm6]	C	T	1.627e^-4	0.359	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10274808	2R_10274808_SNP [dm3] 2R_14387303_SNP [dm6]	A	G	1.630e^-4	0.359	INTERGENIC
X	21283758	X_21283758_SNP [dm3] X_21412731_SNP [dm6]	C	T	1.636e^-4	0.359	INTERGENIC
3L	16423094	3L_16423094_SNP [dm3] 3L_16429994_SNP [dm6]	C	T	1.638e^-4	0.359	INTRON CG33158 & 1 other
3L	13089430	3L_13089430_SNP [dm3] 3L_13096330_SNP [dm6]	A	G	1.641e^-4	0.359	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10648809	2R_10648809_DEL [dm3] 2R_14761304_DEL [dm6]	TG	T	1.642e^-4	0.359	UTR_3_PRIME Spred
3L	11429014	3L_11429014_SNP [dm3] 3L_11435914_SNP [dm6]	C	T	1.647e^-4	0.359	UPSTREAM CG6149 EXON CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3677953	2L_3677953_SNP [dm3] 2L_3677953_SNP [dm6]	T	C	1.648e^-4	0.359	INTRON CG34340
X	2765384	X_2765384_SNP [dm3] X_2871351_SNP [dm6]	T	C	1.649e^-4	0.359	DOWNSTREAM CG14416 INTRON kirre
3R	7828383	3R_7828383_SNP [dm3] 3R_12002661_SNP [dm6]	A	G	1.651e^-4	0.359	SYNONYMOUS_CODING Ect3 INTRON Tk
2L	3271429	2L_3271429_SNP [dm3] 2L_3271429_SNP [dm6]	G	T	1.654e^-4	0.359	STOP_GAINED CG3347
2R	5970173	2R_5970173_SNP [dm3] 2R_10082668_SNP [dm6]	A	C	1.658e^-4	0.359	SYNONYMOUS_CODING egr	TF binding site mE1_TFBS_HSA
2R	15272650	2R_15272650_DEL [dm3] 2R_19385145_DEL [dm6]	CCA	C	1.659e^-4	0.359	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2R	10372170	2R_10372170_SNP [dm3] 2R_14484665_SNP [dm6]	T	C	1.661e^-4	0.359	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	5174186	3L_5174186_SNP [dm3] 3L_5181086_SNP [dm6]	A	T	1.661e^-4	0.359	INTRON shep
2L	8370123	2L_8370123_SNP [dm3] 2L_8370123_SNP [dm6]	A	G	1.662e^-4	0.359	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
3L	18295632	3L_18295632_SNP [dm3] 3L_18302532_SNP [dm6]	A	T	1.663e^-4	0.359	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	5141893	3L_5141893_SNP [dm3] 3L_5148793_SNP [dm6]	G	A	1.663e^-4	0.359	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo
2R	16134893	2R_16134893_SNP [dm3] 2R_20247388_SNP [dm6]	C	T	1.663e^-4	0.359	SYNONYMOUS_CODING ppk6 DOWNSTREAM CG9864	TF binding site mE1_TFBS_cad
2L	4056848	2L_4056848_SNP [dm3] 2L_4056848_SNP [dm6]	A	G	1.665e^-4	0.359	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9121554	2L_9121554_SNP [dm3] 2L_9121554_SNP [dm6]	T	A	1.669e^-4	0.359	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4963547	2R_4963547_SNP [dm3] 2R_9076042_SNP [dm6]	C	G	1.670e^-4	0.359	INTRON ana	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	10372142	2R_10372142_SNP [dm3] 2R_14484637_SNP [dm6]	G	A	1.673e^-4	0.359	INTRON L	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10371682	2R_10371682_SNP [dm3] 2R_14484177_SNP [dm6]	G	T	1.681e^-4	0.36	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9585081	X_9585081_SNP [dm3] X_9691048_SNP [dm6]	T	A	1.681e^-4	0.36	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16423108	3L_16423108_SNP [dm3] 3L_16430008_SNP [dm6]	C	T	1.696e^-4	0.361	INTRON CG33158 & 1 other
2L	3300939	2L_3300939_SNP [dm3] 2L_3300939_SNP [dm6]	T	G	1.699e^-4	0.361	INTRON CG9663
2L	9096056	2L_9096056_SNP [dm3] 2L_9096056_SNP [dm6]	A	T	1.699e^-4	0.361	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4965565	2R_4965565_SNP [dm3] 2R_9078060_SNP [dm6]	C	T	1.700e^-4	0.361	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
2L	11969832	2L_11969832_SNP [dm3] 2L_11969832_SNP [dm6]	T	A	1.701e^-4	0.361	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10260546	2R_10260546_SNP [dm3] 2R_14373041_SNP [dm6]	G	A	1.703e^-4	0.361	UPSTREAM Obp50d DOWNSTREAM CG34185 & 2 others INTERGENIC
2L	13873435	2L_13873435_DEL [dm3] 2L_13873435_DEL [dm6]	TGTAT	T	1.708e^-4	0.361	INTRON CenG1A
X	14023713	X_14023713_SNP [dm3] X_14129680_SNP [dm6]	A	T	1.709e^-4	0.361	INTERGENIC
2R	16322656	2R_16322656_SNP [dm3] 2R_20435151_SNP [dm6]	G	T	1.709e^-4	0.361	INTRON CG12484
2R	10154655	2R_10154655_INS [dm3] 2R_14267150_INS [dm6]	A	AATTTCCGA	1.711e^-4	0.361	INTRON CG8547	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18000246	2L_18000246_SNP [dm3] 2L_18000246_SNP [dm6]	A	G	1.712e^-4	0.361	INTERGENIC
3R	13775572	3R_13775572_SNP [dm3] 3R_17949850_SNP [dm6]	T	G	1.715e^-4	0.361	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	3895142	2L_3895142_SNP [dm3] 2L_3895142_SNP [dm6]	A	T	1.715e^-4	0.361	INTRON capu	TF binding site mE1_TFBS_kn
2L	3895146	2L_3895146_DEL [dm3] 2L_3895146_DEL [dm6]	TC	A	1.715e^-4	0.361	INTRON capu	TF binding site mE1_TFBS_kn
X	12045383	X_12045383_SNP [dm3] X_12151350_SNP [dm6]	C	T	1.717e^-4	0.361	INTRON Ten-a
3L	7821868	3L_7821868_SNP [dm3] 3L_7828768_SNP [dm6]	G	A	1.719e^-4	0.361	UPSTREAM Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11341164	X_11341164_SNP [dm3] X_11447131_SNP [dm6]	G	T	1.719e^-4	0.361	INTRON Evi5	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	17045590	2L_17045590_SNP [dm3] 2L_17045590_SNP [dm6]	A	T	1.721e^-4	0.361	INTERGENIC
2L	2736871	2L_2736871_SNP [dm3] 2L_2736871_SNP [dm6]	T	A	1.721e^-4	0.361	UPSTREAM mir-4914 INTRON CG31689
2R	12020051	2R_12020051_SNP [dm3] 2R_16132546_SNP [dm6]	C	T	1.722e^-4	0.361	SYNONYMOUS_CODING spin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3938437	2L_3938437_DEL [dm3] 2L_3938437_DEL [dm6]	TTGAAAACTCTATTTC...	T	1.724e^-4	0.361	INTRON fred
2R	10371677	2R_10371677_SNP [dm3] 2R_14484172_SNP [dm6]	G	T	1.739e^-4	0.363	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12011568	2R_12011568_SNP [dm3] 2R_16124063_SNP [dm6]	C	T	1.740e^-4	0.363	UPSTREAM spin INTRON CG30095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Ubx
2R	13095860	2R_13095860_SNP [dm3] 2R_17208355_SNP [dm6]	T	A	1.741e^-4	0.363	INTERGENIC
3L	9207660	3L_9207660_SNP [dm3] 3L_9214560_SNP [dm6]	A	T	1.743e^-4	0.363	INTRON CG4476
3L	9207656	3L_9207656_SNP [dm3] 3L_9214556_SNP [dm6]	C	A	1.746e^-4	0.363	INTRON CG4476
3L	4378405	3L_4378405_SNP [dm3] 3L_4378405_SNP [dm6]	A	T	1.747e^-4	0.363	UPSTREAM CR44360 INTRON DopEcR
2R	13094633	2R_13094633_SNP [dm3] 2R_17207128_SNP [dm6]	G	A	1.760e^-4	0.365	INTERGENIC
2L	3271417	2L_3271417_SNP [dm3] 2L_3271417_SNP [dm6]	A	G	1.770e^-4	0.367	NON_SYNONYMOUS_CODING CG3347
3L	2288881	3L_2288881_SNP [dm3] 3L_2288881_SNP [dm6]	T	C	1.775e^-4	0.367	INTRON MsR2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9453342	2L_9453342_SNP [dm3] 2L_9453342_SNP [dm6]	G	T	1.781e^-4	0.367	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10672495	2R_10672495_SNP [dm3] 2R_14784990_SNP [dm6]	C	A	1.781e^-4	0.367	INTRON kn
X	9190297	X_9190297_SNP [dm3] X_9296264_SNP [dm6]	T	C	1.785e^-4	0.367	INTRON lz	TF binding site mE1_TFBS_Kr
2R	10160983	2R_10160983_SNP [dm3] 2R_14273478_SNP [dm6]	C	G	1.786e^-4	0.367	INTRON conv
2R	13748771	2R_13748771_SNP [dm3] 2R_17861266_SNP [dm6]	A	T	1.787e^-4	0.367	DOWNSTREAM thr & 1 other INTRON CG14490
X	4216377	X_4216377_SNP [dm3] X_4322344_SNP [dm6]	T	G	1.792e^-4	0.367	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14950366	2L_14950366_SNP [dm3] 2L_14950366_SNP [dm6]	T	A	1.793e^-4	0.367	INTRON CG42313
2L	9253432	2L_9253432_SNP [dm3] 2L_9253432_SNP [dm6]	A	C	1.793e^-4	0.367	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	7872939	2L_7872939_DEL [dm3] 2L_7872939_DEL [dm6]	TAT	T	1.795e^-4	0.367	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
2R	13710402	2R_13710402_SNP [dm3] 2R_17822897_SNP [dm6]	A	G	1.797e^-4	0.367	UPSTREAM grh INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi transposable element FlyBase
2R	7470856	2R_7470856_SNP [dm3] 2R_11583351_SNP [dm6]	C	T	1.797e^-4	0.367	SYNONYMOUS_CODING tou UPSTREAM tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	17065350	2L_17065350_SNP [dm3] 2L_17065350_SNP [dm6]	G	A	1.798e^-4	0.367	INTERGENIC
3L	10726178	3L_10726178_SNP [dm3] 3L_10733078_SNP [dm6]	A	G	1.798e^-4	0.367	INTERGENIC
2L	4436796	2L_4436796_SNP [dm3] 2L_4436796_SNP [dm6]	A	G	1.799e^-4	0.367	UPSTREAM CG43056 INTRON CG15431
2R	9631567	2R_9631567_SNP [dm3] 2R_13744062_SNP [dm6]	T	A	1.801e^-4	0.367	INTRON fas
2R	8638091	2R_8638091_SNP [dm3] 2R_12750586_SNP [dm6]	C	T	1.803e^-4	0.367	SYNONYMOUS_CODING CG42663 DOWNSTREAM mos	TF binding site mE1_TFBS_cad
X	4216551	X_4216551_SNP [dm3] X_4322518_SNP [dm6]	C	A	1.806e^-4	0.367	UPSTREAM norpA & 1 other DOWNSTREAM CG2982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	17963187	2L_17963187_SNP [dm3] 2L_17963187_SNP [dm6]	A	G	1.807e^-4	0.367	UPSTREAM CG5674 INTRON btv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	3023804	3L_3023804_SNP [dm3] 3L_3023804_SNP [dm6]	C	T	1.809e^-4	0.367	DOWNSTREAM aly INTERGENIC
3L	12067015	3L_12067015_SNP [dm3] 3L_12073915_SNP [dm6]	C	T	1.812e^-4	0.367	INTRON Sema-5c
2R	5972920	2R_5972920_SNP [dm3] 2R_10085415_SNP [dm6]	G	A	1.815e^-4	0.368	UTR_5_PRIME CG2269 DOWNSTREAM sut4
2L	19920038	2L_19920038_SNP [dm3] 2L_19920038_SNP [dm6]	T	C	1.816e^-4	0.368	INTRON sick EXON CR43828
2L	547931	2L_547931_SNP [dm3] 2L_547931_SNP [dm6]	T	G	1.821e^-4	0.368	DOWNSTREAM nAChRbeta3 INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7775237	2L_7775237_SNP [dm3] 2L_7775237_SNP [dm6]	G	C	1.828e^-4	0.368	DOWNSTREAM CG7179 & 1 other INTERGENIC
3R	20852709	3R_20852709_SNP [dm3] 3R_25026987_SNP [dm6]	A	C	1.828e^-4	0.368	SYNONYMOUS_CODING Hr96	TF binding site mE1_TFBS_sens
2L	5633384	2L_5633384_SNP [dm3] 2L_5633384_SNP [dm6]	C	T	1.829e^-4	0.368	UPSTREAM CR44822 INTRON CG31646
2L	8494907	2L_8494907_SNP [dm3] 2L_8494907_SNP [dm6]	A	C	1.830e^-4	0.368	UTR_3_PRIME Bace DOWNSTREAM Bace INTRON Dh31
2L	14458135	2L_14458135_SNP [dm3] 2L_14458135_SNP [dm6]	C	A	1.833e^-4	0.368	DOWNSTREAM CR44730 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	1836279	3L_1836279_SNP [dm3] 3L_1836279_SNP [dm6]	C	T	1.834e^-4	0.368	INTERGENIC
2L	9186304	2L_9186304_SNP [dm3] 2L_9186304_SNP [dm6]	T	A	1.838e^-4	0.369	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8034212	2L_8034212_SNP [dm3] 2L_8034212_SNP [dm6]	C	G	1.844e^-4	0.369	INTRON CG7367 & 1 other
2R	10161403	2R_10161403_SNP [dm3] 2R_14273898_SNP [dm6]	C	T	1.845e^-4	0.369	SYNONYMOUS_CODING conv
2R	10572638	2R_10572638_SNP [dm3] 2R_14685133_SNP [dm6]	A	G	1.846e^-4	0.369	INTRON mspo
3R	13807360	3R_13807360_SNP [dm3] 3R_17981638_SNP [dm6]	A	C	1.849e^-4	0.369	INTRON cpo
3L	10508855	3L_10508855_SNP [dm3] 3L_10515755_SNP [dm6]	C	T	1.850e^-4	0.369	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	7204630	2R_7204630_SNP [dm3] 2R_11317125_SNP [dm6]	C	G	1.855e^-4	0.37	SYNONYMOUS_CODING nompA
X	17232758	X_17232758_SNP [dm3] X_17338725_SNP [dm6]	G	T	1.856e^-4	0.37	INTERGENIC
2R	4564723	2R_4564723_SNP [dm3] 2R_8677218_SNP [dm6]	G	T	1.859e^-4	0.37	UPSTREAM CG30354 INTRON Acsl
2L	10872458	2L_10872458_SNP [dm3] 2L_10872458_SNP [dm6]	C	T	1.860e^-4	0.37	DOWNSTREAM CR45454 INTERGENIC
2R	18700092	2R_18700092_SNP [dm3] 2R_22812587_SNP [dm6]	C	A	1.863e^-4	0.37	INTRON stl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22031931	3R_22031931_SNP [dm3] 3R_26206209_SNP [dm6]	C	G	1.865e^-4	0.37	INTRON CR44320
3R	14144836	3R_14144836_SNP [dm3] 3R_18319114_SNP [dm6]	A	T	1.877e^-4	0.371	INTRON CG31235
2R	10372133	2R_10372133_SNP [dm3] 2R_14484628_SNP [dm6]	T	A	1.877e^-4	0.371	INTRON L	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	27035947	3R_27035947_SNP [dm3] 3R_31210225_SNP [dm6]	G	T	1.878e^-4	0.371	DOWNSTREAM Zwilch INTRON chp
2R	10846124	2R_10846124_SNP [dm3] 2R_14958619_SNP [dm6]	T	C	1.881e^-4	0.371	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3997455	2L_3997455_SNP [dm3] 2L_3997455_SNP [dm6]	G	A	1.883e^-4	0.371	INTERGENIC
2L	6594142	2L_6594142_SNP [dm3] 2L_6594142_SNP [dm6]	C	T	1.883e^-4	0.371	INTRON CG11319	TF binding site BDTNP1_TFBS_dl
X	17207964	X_17207964_SNP [dm3] X_17313931_SNP [dm6]	C	A	1.884e^-4	0.371	UPSTREAM B-H2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	22960278	3R_22960278_SNP [dm3] 3R_27134556_SNP [dm6]	C	T	1.885e^-4	0.371	INTRON CG6051
3R	22064071	3R_22064071_SNP [dm3] 3R_26238349_SNP [dm6]	G	A	1.894e^-4	0.371	INTRON CR42745
X	16887060	X_16887060_SNP [dm3] X_16993027_SNP [dm6]	C	T	1.897e^-4	0.371	INTRON CG45002
3L	20079723	3L_20079723_SNP [dm3] 3L_20086623_SNP [dm6]	A	T	1.897e^-4	0.371	INTRON sNPF-R
3R	21609982	3R_21609982_SNP [dm3] 3R_25784260_SNP [dm6]	A	G	1.899e^-4	0.371	INTERGENIC
2L	18276096	2L_18276096_SNP [dm3] 2L_18276096_SNP [dm6]	A	G	1.899e^-4	0.371	UPSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_cad
3R	23560484	3R_23560484_SNP [dm3] 3R_27734762_SNP [dm6]	C	T	1.902e^-4	0.371	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
4	689448	4_689448_SNP [dm3] 4_668822_SNP [dm6]	A	C	1.905e^-4	0.371	INTRON Slip1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17673073	X_17673073_SNP [dm3] X_17779040_SNP [dm6]	G	A	1.905e^-4	0.371	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	4491649	2R_4491649_SNP [dm3] 2R_8604144_SNP [dm6]	G	T	1.912e^-4	0.372	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9567450	X_9567450_SNP [dm3] X_9673417_SNP [dm6]	A	G	1.920e^-4	0.373	INTRON nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16004269	2L_16004269_DEL [dm3] 2L_16004269_DEL [dm6]	TTACTTGATTGGTTGTGTC...	T	1.922e^-4	0.373	SPLICE_SITE_DONOR CR43826 SPLICE_SITE_REGION CR43826 UPSTREAM CG13245 & 2 others INTRON beat-Ic & 1 other EXON CR43826
2R	18698226	2R_18698226_SNP [dm3] 2R_22810721_SNP [dm6]	T	C	1.923e^-4	0.373	INTRON stl
2R	10540199	2R_10540199_SNP [dm3] 2R_14652694_SNP [dm6]	T	C	1.924e^-4	0.373	INTERGENIC
2L	11314735	2L_11314735_SNP [dm3] 2L_11314735_SNP [dm6]	T	C	1.924e^-4	0.373	INTERGENIC
2R	12278454	2R_12278454_SNP [dm3] 2R_16390949_SNP [dm6]	G	C	1.929e^-4	0.373	INTRON Sema-2b
2L	3830449	2L_3830449_INS [dm3] 2L_3830449_INS [dm6]	A	AG	1.934e^-4	0.374	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	8999908	2L_8999908_SNP [dm3] 2L_8999908_SNP [dm6]	T	G	1.934e^-4	0.374	DOWNSTREAM Try29F INTERGENIC
3R	25461261	3R_25461261_SNP [dm3] 3R_29635539_SNP [dm6]	C	A	1.941e^-4	0.375	INTRON Dop1R2
3L	1267036	3L_1267036_SNP [dm3] 3L_1267036_SNP [dm6]	C	A	1.947e^-4	0.375	INTRON CG9134
2L	6525314	2L_6525314_SNP [dm3] 2L_6525314_SNP [dm6]	A	C	1.950e^-4	0.375	INTRON CG31637
3L	3024685	3L_3024685_SNP [dm3] 3L_3024685_SNP [dm6]	T	C	1.954e^-4	0.375	SYNONYMOUS_CODING aly
X	11340199	X_11340199_SNP [dm3] X_11446166_SNP [dm6]	A	C	1.955e^-4	0.375	DOWNSTREAM Sk1 INTRON Evi5
X	21283840	X_21283840_SNP [dm3] X_21412813_SNP [dm6]	A	G	1.956e^-4	0.375	INTERGENIC
2L	9304587	2L_9304587_SNP [dm3] 2L_9304587_SNP [dm6]	C	G	1.956e^-4	0.375	EXON CR42844
3L	9753820	3L_9753820_SNP [dm3] 3L_9760720_SNP [dm6]	A	T	1.959e^-4	0.375	UPSTREAM CR45407 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	10581868	2R_10581868_SNP [dm3] 2R_14694363_SNP [dm6]	G	A	1.960e^-4	0.375	INTRON mspo
2L	6677459	2L_6677459_SNP [dm3] 2L_6677459_SNP [dm6]	T	C	1.962e^-4	0.375	SYNONYMOUS_CODING CG11329 UPSTREAM cort DOWNSTREAM Nhe3	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	11314737	2L_11314737_SNP [dm3] 2L_11314737_SNP [dm6]	T	C	1.966e^-4	0.376	INTERGENIC
2R	11741984	2R_11741984_SNP [dm3] 2R_15854479_SNP [dm6]	T	A	1.971e^-4	0.376	UTR_3_PRIME tun DOWNSTREAM tun
3R	12948767	3R_12948767_DEL [dm3] 3R_17123045_DEL [dm6]	TT	A	1.973e^-4	0.376	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
2L	19901382	2L_19901382_SNP [dm3] 2L_19901382_SNP [dm6]	G	A	1.976e^-4	0.376	INTRON sick
3R	22712487	3R_22712487_SNP [dm3] 3R_26886765_SNP [dm6]	G	C	1.976e^-4	0.376	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13302129	2R_13302129_INS [dm3] 2R_17414624_INS [dm6]	G	GGTGTTG	1.979e^-4	0.376	CODON_INSERTION cnk DOWNSTREAM Prosalpha5
3L	19642380	3L_19642380_SNP [dm3] 3L_19649280_SNP [dm6]	G	T	1.980e^-4	0.376	INTRON Oat
2R	14968333	2R_14968333_SNP [dm3] 2R_19080828_SNP [dm6]	G	A	1.986e^-4	0.376	INTRON 5-HT1A
2L	5722412	2L_5722412_SNP [dm3] 2L_5722412_SNP [dm6]	T	G	1.989e^-4	0.376	NON_SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1360275	3L_1360275_SNP [dm3] 3L_1360275_SNP [dm6]	G	A	1.989e^-4	0.376	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6724687	3R_6724687_SNP [dm3] 3R_10898965_SNP [dm6]	A	T	1.990e^-4	0.376	UPSTREAM CR45578 INTERGENIC
2L	2359022	2L_2359022_SNP [dm3] 2L_2359022_SNP [dm6]	G	T	1.994e^-4	0.376	DOWNSTREAM Rab5 & 1 other INTERGENIC
2L	5712219	2L_5712219_SNP [dm3] 2L_5712219_SNP [dm6]	C	T	1.995e^-4	0.376	INTRON CG7236
2L	17060244	2L_17060244_SNP [dm3] 2L_17060244_SNP [dm6]	C	A	2.001e^-4	0.377	INTERGENIC
2R	4564771	2R_4564771_SNP [dm3] 2R_8677266_SNP [dm6]	T	C	2.005e^-4	0.378	UTR_5_PRIME CG30354 INTRON Acsl
2L	8560283	2L_8560283_SNP [dm3] 2L_8560283_SNP [dm6]	C	G	2.007e^-4	0.378	INTRON Sema-1a
2R	10418870	2R_10418870_SNP [dm3] 2R_14531365_SNP [dm6]	C	T	2.011e^-4	0.378	INTRON ttv
X	13534872	X_13534872_SNP [dm3] X_13640839_SNP [dm6]	T	C	2.012e^-4	0.378	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11831946	2R_11831946_SNP [dm3] 2R_15944441_SNP [dm6]	T	C	2.016e^-4	0.378	UTR_3_PRIME CG30093 INTRON Cyp4aa1

By genomic position
Variant impact
Gene name

Delta_Alive.at.48h Experience 2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results