DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.072e^-12)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.09131

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.2055	0.0741

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3233 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	10608749	2R_10608749_SNP [dm3] 2R_14721244_SNP [dm6]	C	G	1.496e^-8	0.025	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10621372	2R_10621372_SNP [dm3] 2R_14733867_SNP [dm6]	C	A	5.121e^-8	0.025	INTERGENIC
2R	10608747	2R_10608747_SNP [dm3] 2R_14721242_SNP [dm6]	C	T	6.435e^-8	0.025	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10721948	2R_10721948_SNP [dm3] 2R_14834443_SNP [dm6]	C	A	7.742e^-8	0.025	DOWNSTREAM CG10205 INTERGENIC
2R	10705677	2R_10705677_SNP [dm3] 2R_14818172_SNP [dm6]	G	T	1.033e^-7	0.025	NON_SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10719564	2R_10719564_SNP [dm3] 2R_14832059_SNP [dm6]	G	A	1.033e^-7	0.025	UPSTREAM CG10205 INTERGENIC
2R	10715639	2R_10715639_SNP [dm3] 2R_14828134_SNP [dm6]	A	T	1.074e^-7	0.025	INTERGENIC
2R	10713301	2R_10713301_SNP [dm3] 2R_14825796_SNP [dm6]	T	G	1.121e^-7	0.025	INTERGENIC
2L	8390046	2L_8390046_SNP [dm3] 2L_8390046_SNP [dm6]	G	A	1.229e^-7	0.025	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi
2R	10700525	2R_10700525_SNP [dm3] 2R_14813020_SNP [dm6]	G	A	1.349e^-7	0.025	INTERGENIC	regulatory region REDfly_CRMs
2L	8390177	2L_8390177_SNP [dm3] 2L_8390177_SNP [dm6]	T	G	1.627e^-7	0.028	SYNONYMOUS_CODING CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10749489	2R_10749489_SNP [dm3] 2R_14861984_SNP [dm6]	C	T	2.236e^-7	0.035	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8390049	2L_8390049_SNP [dm3] 2L_8390049_SNP [dm6]	C	T	2.982e^-7	0.043	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10368189	2R_10368189_SNP [dm3] 2R_14480684_SNP [dm6]	G	C	3.485e^-7	0.047	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	10676596	2R_10676596_SNP [dm3] 2R_14789091_SNP [dm6]	G	T	4.645e^-7	0.058	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7475070	2R_7475070_SNP [dm3] 2R_11587565_SNP [dm6]	A	T	5.137e^-7	0.059	SYNONYMOUS_CODING tou DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	8390166	2L_8390166_SNP [dm3] 2L_8390166_SNP [dm6]	A	G	5.415e^-7	0.059	SYNONYMOUS_CODING CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15863357	2R_15863357_SNP [dm3] 2R_19975852_SNP [dm6]	G	A	5.712e^-7	0.059	INTERGENIC
2R	10460322	2R_10460322_SNP [dm3] 2R_14572817_SNP [dm6]	C	A	6.171e^-7	0.059	SYNONYMOUS_CODING LamC INTRON ttv
2R	15861441	2R_15861441_SNP [dm3] 2R_19973936_SNP [dm6]	A	G	6.264e^-7	0.059	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10608696	2R_10608696_SNP [dm3] 2R_14721191_SNP [dm6]	G	A	7.969e^-7	0.071	INTERGENIC
2R	10701426	2R_10701426_SNP [dm3] 2R_14813921_SNP [dm6]	G	A	9.595e^-7	0.081	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8363433	2L_8363433_DEL [dm3] 2L_8363433_DEL [dm6]	CC	C	9.918e^-7	0.081	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	10674472	2R_10674472_SNP [dm3] 2R_14786967_SNP [dm6]	A	G	1.255e^-6	0.086	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	10675354	2R_10675354_SNP [dm3] 2R_14787849_SNP [dm6]	C	A	1.255e^-6	0.086	INTRON kn	TF binding site BDTNP1_TFBS_da
2L	10870068	2L_10870068_SNP [dm3] 2L_10870068_SNP [dm6]	C	T	1.265e^-6	0.086	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10585509	2R_10585509_SNP [dm3] 2R_14698004_SNP [dm6]	G	T	1.274e^-6	0.086	INTRON mspo
2R	10616116	2R_10616116_SNP [dm3] 2R_14728611_SNP [dm6]	G	A	1.281e^-6	0.086	INTERGENIC
2R	12245315	2R_12245315_SNP [dm3] 2R_16357810_SNP [dm6]	G	A	1.353e^-6	0.087	DOWNSTREAM CR45322 EXON CR43416
2R	10294461	2R_10294461_SNP [dm3] 2R_14406956_SNP [dm6]	T	A	1.432e^-6	0.09	INTERGENIC
2L	9621407	2L_9621407_SNP [dm3] 2L_9621407_SNP [dm6]	C	T	1.553e^-6	0.094	SYNONYMOUS_CODING GlcAT-S
3R	14345446	3R_14345446_SNP [dm3] 3R_18519724_SNP [dm6]	T	G	1.607e^-6	0.094	INTRON fru
2R	10608610	2R_10608610_SNP [dm3] 2R_14721105_SNP [dm6]	C	G	1.814e^-6	0.103	INTERGENIC
2R	10585511	2R_10585511_SNP [dm3] 2R_14698006_SNP [dm6]	T	A	2.029e^-6	0.111	INTRON mspo
2L	12141445	2L_12141445_SNP [dm3] 2L_12141445_SNP [dm6]	C	T	2.155e^-6	0.111	INTERGENIC
2R	10622250	2R_10622250_SNP [dm3] 2R_14734745_SNP [dm6]	A	T	2.178e^-6	0.111	INTERGENIC
3L	18746778	3L_18746778_SNP [dm3] 3L_18753678_SNP [dm6]	A	T	2.210e^-6	0.111	INTRON ftz-f1
2R	7475262	2R_7475262_SNP [dm3] 2R_11587757_SNP [dm6]	C	A	2.272e^-6	0.111	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	10153979	2R_10153979_SNP [dm3] 2R_14266474_SNP [dm6]	A	G	2.307e^-6	0.111	INTRON CG8547
2L	10869985	2L_10869985_SNP [dm3] 2L_10869985_SNP [dm6]	C	G	2.442e^-6	0.112	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10549501	2R_10549501_SNP [dm3] 2R_14661996_SNP [dm6]	T	G	2.525e^-6	0.112	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10702960	2R_10702960_SNP [dm3] 2R_14815455_SNP [dm6]	A	C	2.536e^-6	0.112	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10721104	2R_10721104_SNP [dm3] 2R_14833599_SNP [dm6]	G	A	2.569e^-6	0.112	NON_SYNONYMOUS_CODING CG10205 UTR_3_PRIME CG10205
2R	7475118	2R_7475118_SNP [dm3] 2R_11587613_SNP [dm6]	G	T	2.723e^-6	0.116	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	10549497	2R_10549497_SNP [dm3] 2R_14661992_SNP [dm6]	T	G	2.910e^-6	0.121	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12370631	2R_12370631_SNP [dm3] 2R_16483126_SNP [dm6]	G	A	3.089e^-6	0.123	INTERGENIC
2R	10676540	2R_10676540_SNP [dm3] 2R_14789035_SNP [dm6]	C	T	3.092e^-6	0.123	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17054282	2L_17054282_SNP [dm3] 2L_17054282_SNP [dm6]	A	T	3.337e^-6	0.13	INTERGENIC
3L	3024694	3L_3024694_SNP [dm3] 3L_3024694_SNP [dm6]	G	A	3.407e^-6	0.13	SYNONYMOUS_CODING aly
2R	10151361	2R_10151361_SNP [dm3] 2R_14263856_SNP [dm6]	A	C	4.160e^-6	0.155	SPLICE_SITE_REGION CG8547 INTRON CG8547	TF binding site mE1_TFBS_cad
X	4561087	X_4561087_SNP [dm3] X_4667054_SNP [dm6]	C	G	4.206e^-6	0.155	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3R	14345445	3R_14345445_SNP [dm3] 3R_18519723_SNP [dm6]	T	A	4.528e^-6	0.16	INTRON fru
3L	10921255	3L_10921255_SNP [dm3] 3L_10928155_SNP [dm6]	T	C	4.529e^-6	0.16	INTERGENIC
3L	19770694	3L_19770694_SNP [dm3] 3L_19777594_SNP [dm6]	A	T	4.784e^-6	0.164	INTRON CG42637 & 1 other
2R	10676788	2R_10676788_SNP [dm3] 2R_14789283_SNP [dm6]	C	T	4.797e^-6	0.164	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	10688949	2R_10688949_SNP [dm3] 2R_14801444_SNP [dm6]	C	A	4.931e^-6	0.165	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10622258	2R_10622258_SNP [dm3] 2R_14734753_SNP [dm6]	T	C	5.072e^-6	0.167	INTERGENIC
2L	11710313	2L_11710313_SNP [dm3] 2L_11710313_SNP [dm6]	G	T	5.209e^-6	0.168	INTERGENIC
3L	14980603	3L_14980603_SNP [dm3] 3L_14987503_SNP [dm6]	C	A	5.452e^-6	0.173	UTR_5_PRIME mnd INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4376521	2L_4376521_SNP [dm3] 2L_4376521_SNP [dm6]	A	T	5.614e^-6	0.175	INTRON Traf4	TF binding site mE1_TFBS_cad
2R	10004495	2R_10004495_SNP [dm3] 2R_14116990_SNP [dm6]	T	A	5.992e^-6	0.184	INTRON Prosap
X	4561091	X_4561091_SNP [dm3] X_4667058_SNP [dm6]	C	A	6.171e^-6	0.184	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2R	8918212	2R_8918212_SNP [dm3] 2R_13030707_SNP [dm6]	A	T	6.199e^-6	0.184	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9304036	2L_9304036_SNP [dm3] 2L_9304036_SNP [dm6]	C	T	6.331e^-6	0.184	DOWNSTREAM CR42844 INTERGENIC
2R	8587821	2R_8587821_SNP [dm3] 2R_12700316_SNP [dm6]	A	T	6.458e^-6	0.184	NON_SYNONYMOUS_CODING wuc
2R	10704614	2R_10704614_SNP [dm3] 2R_14817109_SNP [dm6]	G	A	6.479e^-6	0.184	DOWNSTREAM CG10202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10154658	2R_10154658_SNP [dm3] 2R_14267153_SNP [dm6]	A	G	6.631e^-6	0.186	INTRON CG8547	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21094572	3L_21094572_SNP [dm3] 3L_21101472_SNP [dm6]	C	T	6.852e^-6	0.189	INTRON ko	regulatory region REDfly_CRMs
2R	10171174	2R_10171174_SNP [dm3] 2R_14283669_SNP [dm6]	G	A	7.124e^-6	0.191	INTRON Ih
X	16131982	X_16131982_SNP [dm3] X_16237949_SNP [dm6]	T	A	7.143e^-6	0.191	INTERGENIC
2R	10366370	2R_10366370_SNP [dm3] 2R_14478865_SNP [dm6]	T	C	7.324e^-6	0.193	DOWNSTREAM CR44462 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15620180	3R_15620180_SNP [dm3] 3R_19794458_SNP [dm6]	C	G	7.486e^-6	0.194	DOWNSTREAM bnl INTRON bnl
3L	20757697	3L_20757697_SNP [dm3] 3L_20764597_SNP [dm6]	C	T	7.544e^-6	0.194	INTERGENIC
2R	10188073	2R_10188073_SNP [dm3] 2R_14300568_SNP [dm6]	C	A	8.168e^-6	0.205	NON_SYNONYMOUS_CODING tej DOWNSTREAM Ih
2R	10585346	2R_10585346_SNP [dm3] 2R_14697841_SNP [dm6]	C	T	8.199e^-6	0.205	INTRON mspo
X	21054778	X_21054778_SNP [dm3] X_21183751_SNP [dm6]	T	C	8.522e^-6	0.207	INTERGENIC
3R	12874837	3R_12874837_SNP [dm3] 3R_17049115_SNP [dm6]	T	G	8.565e^-6	0.207	DOWNSTREAM Patr-1 INTERGENIC
X	9986149	X_9986149_SNP [dm3] X_10092116_SNP [dm6]	C	T	8.699e^-6	0.207	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12972020	2R_12972020_SNP [dm3] 2R_17084515_SNP [dm6]	G	T	8.710e^-6	0.207	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7474864	2R_7474864_SNP [dm3] 2R_11587359_SNP [dm6]	C	T	8.926e^-6	0.209	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	7475985	2R_7475985_SNP [dm3] 2R_11588480_SNP [dm6]	G	T	9.023e^-6	0.209	SYNONYMOUS_CODING tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad
3R	9398434	3R_9398434_SNP [dm3] 3R_13572712_SNP [dm6]	A	C	9.821e^-6	0.225	INTERGENIC
3R	5641700	3R_5641700_SNP [dm3] 3R_9815978_SNP [dm6]	G	T	1.036e^-5	0.23	UTR_3_PRIME CG16904 DOWNSTREAM eloF	TF binding site BDTNP1_TFBS_da
3L	10726178	3L_10726178_SNP [dm3] 3L_10733078_SNP [dm6]	A	G	1.037e^-5	0.23	INTERGENIC
2R	10154655	2R_10154655_INS [dm3] 2R_14267150_INS [dm6]	A	AATTTCCGA	1.040e^-5	0.23	INTRON CG8547	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12710782	3L_12710782_SNP [dm3] 3L_12717682_SNP [dm6]	G	A	1.091e^-5	0.238	INTERGENIC
2L	6525314	2L_6525314_SNP [dm3] 2L_6525314_SNP [dm6]	A	C	1.127e^-5	0.243	INTRON CG31637
2R	10151270	2R_10151270_SNP [dm3] 2R_14263765_SNP [dm6]	C	T	1.145e^-5	0.243	SYNONYMOUS_CODING CG8547	TF binding site mE1_TFBS_cad
3L	18746854	3L_18746854_SNP [dm3] 3L_18753754_SNP [dm6]	A	T	1.151e^-5	0.243	INTRON ftz-f1
2R	9253357	2R_9253357_SNP [dm3] 2R_13365852_SNP [dm6]	C	A	1.190e^-5	0.248	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10508075	2R_10508075_SNP [dm3] 2R_14620570_SNP [dm6]	A	T	1.243e^-5	0.256	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	17054078	2L_17054078_SNP [dm3] 2L_17054078_SNP [dm6]	T	G	1.282e^-5	0.261	INTERGENIC
2R	10160806	2R_10160806_SNP [dm3] 2R_14273301_SNP [dm6]	C	T	1.339e^-5	0.269	NON_SYNONYMOUS_CODING conv
2L	10809640	2L_10809640_SNP [dm3] 2L_10809640_SNP [dm6]	A	G	1.354e^-5	0.269	INTRON Nos
3R	5641701	3R_5641701_SNP [dm3] 3R_9815979_SNP [dm6]	G	T	1.364e^-5	0.269	UTR_3_PRIME CG16904 DOWNSTREAM eloF	TF binding site BDTNP1_TFBS_da
3R	20562591	3R_20562591_SNP [dm3] 3R_24736869_SNP [dm6]	T	A	1.392e^-5	0.272	INTRON tok
2R	3373740	2R_3373740_SNP [dm3] 2R_7486235_SNP [dm6]	G	A	1.456e^-5	0.282	UTR_5_PRIME wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10608631	2R_10608631_SNP [dm3] 2R_14721126_SNP [dm6]	G	A	1.482e^-5	0.284	INTERGENIC
2R	10700594	2R_10700594_SNP [dm3] 2R_14813089_SNP [dm6]	A	G	1.592e^-5	0.302	INTERGENIC
3L	13441776	3L_13441776_SNP [dm3] 3L_13448676_SNP [dm6]	A	T	1.614e^-5	0.302	SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
2L	16039991	2L_16039991_SNP [dm3] 2L_16039991_SNP [dm6]	T	C	1.627e^-5	0.302	UTR_3_PRIME beat-Ic
2R	13095737	2R_13095737_SNP [dm3] 2R_17208232_SNP [dm6]	A	G	1.663e^-5	0.306	INTERGENIC
2R	11072270	2R_11072270_INS [dm3] 2R_15184765_INS [dm6]	G	GCAGACAGATG...	1.714e^-5	0.312	UPSTREAM CG43068 INTRON igl
2R	8688844	2R_8688844_SNP [dm3] 2R_12801339_SNP [dm6]	G	A	1.750e^-5	0.312	UTR_3_PRIME sca DOWNSTREAM sca
3L	3302748	3L_3302748_SNP [dm3] 3L_3302748_SNP [dm6]	C	A	1.792e^-5	0.312	UPSTREAM CG14968 & 1 other INTRON CG14968
X	3179210	X_3179210_SNP [dm3] X_3285177_SNP [dm6]	C	T	1.807e^-5	0.312	INTRON dnc
3L	3302743	3L_3302743_INS [dm3] 3L_3302743_INS [dm6]	CCC	AATGGAAGGGA...	1.837e^-5	0.312	UPSTREAM CG14968 & 1 other INTRON CG14968
2L	3401507	2L_3401507_SNP [dm3] 2L_3401507_SNP [dm6]	A	G	1.838e^-5	0.312	INTERGENIC
2R	11072288	2R_11072288_SNP [dm3] 2R_15184783_SNP [dm6]	G	C	1.847e^-5	0.312	UPSTREAM CG43068 INTRON igl
2L	8998239	2L_8998239_SNP [dm3] 2L_8998239_SNP [dm6]	C	T	1.888e^-5	0.312	SYNONYMOUS_CODING CG18661 UPSTREAM alien & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3L	18228306	3L_18228306_SNP [dm3] 3L_18235206_SNP [dm6]	T	C	1.927e^-5	0.312	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7474883	2R_7474883_SNP [dm3] 2R_11587378_SNP [dm6]	C	T	1.935e^-5	0.312	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
X	19282907	X_19282907_SNP [dm3] X_19388874_SNP [dm6]	G	C	1.942e^-5	0.312	INTRON kek5
2R	13775901	2R_13775901_SNP [dm3] 2R_17888396_SNP [dm6]	G	A	1.958e^-5	0.312	SYNONYMOUS_CODING PPO1 INTRON Elk	TF binding site mE1_TFBS_cad
2R	10688036	2R_10688036_SNP [dm3] 2R_14800531_SNP [dm6]	A	G	1.973e^-5	0.312	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	17201842	X_17201842_SNP [dm3] X_17307809_SNP [dm6]	C	T	1.982e^-5	0.312	INTERGENIC
2R	10441975	2R_10441975_SNP [dm3] 2R_14554470_SNP [dm6]	T	C	1.989e^-5	0.312	UPSTREAM CG43919 INTRON ttv
2L	7895339	2L_7895339_SNP [dm3] 2L_7895339_SNP [dm6]	A	G	2.003e^-5	0.312	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3434087	2L_3434087_SNP [dm3] 2L_3434087_SNP [dm6]	C	T	2.011e^-5	0.312	INTERGENIC
3R	9449043	3R_9449043_SNP [dm3] 3R_13623321_SNP [dm6]	G	A	2.020e^-5	0.312	INTERGENIC
2R	10151602	2R_10151602_SNP [dm3] 2R_14264097_SNP [dm6]	C	T	2.021e^-5	0.312	INTRON CG8547	TF binding site mE1_TFBS_cad
X	7962630	X_7962630_SNP [dm3] X_8068597_SNP [dm6]	G	T	2.045e^-5	0.312	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad
2L	8389638	2L_8389638_SNP [dm3] 2L_8389638_SNP [dm6]	A	T	2.045e^-5	0.312	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2L	8972595	2L_8972595_SNP [dm3] 2L_8972595_SNP [dm6]	C	T	2.116e^-5	0.313	INTRON CG9541
2R	9226464	2R_9226464_SNP [dm3] 2R_13338959_SNP [dm6]	G	A	2.133e^-5	0.313	INTRON CR44206	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9253351	2R_9253351_SNP [dm3] 2R_13365846_SNP [dm6]	A	T	2.142e^-5	0.313	INTERGENIC	TF binding site mE1_TFBS_cad
X	21054801	X_21054801_SNP [dm3] X_21183774_SNP [dm6]	G	A	2.146e^-5	0.313	INTERGENIC
2L	6525313	2L_6525313_SNP [dm3] 2L_6525313_SNP [dm6]	G	C	2.149e^-5	0.313	INTRON CG31637
3R	20852709	3R_20852709_SNP [dm3] 3R_25026987_SNP [dm6]	A	C	2.154e^-5	0.313	SYNONYMOUS_CODING Hr96	TF binding site mE1_TFBS_sens
2R	12198042	2R_12198042_SNP [dm3] 2R_16310537_SNP [dm6]	C	T	2.192e^-5	0.316	INTRON Nox	TF binding site mE1_TFBS_chinmo
2L	4231695	2L_4231695_SNP [dm3] 2L_4231695_SNP [dm6]	C	T	2.209e^-5	0.316	INTERGENIC
X	16545015	X_16545015_DEL [dm3] X_16650982_DEL [dm6]	ATTCAAGATAAAATTAACCT...	A	2.253e^-5	0.318	UPSTREAM CG32573 & 1 other DOWNSTREAM mthl1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	9030231	2L_9030231_SNP [dm3] 2L_9030231_SNP [dm6]	T	G	2.269e^-5	0.318	INTRON CG9582 & 1 other
X	16069926	X_16069926_SNP [dm3] X_16175893_SNP [dm6]	G	A	2.297e^-5	0.318	INTERGENIC
2R	7474501	2R_7474501_SNP [dm3] 2R_11586996_SNP [dm6]	G	A	2.298e^-5	0.318	SYNONYMOUS_CODING tou
3R	22604755	3R_22604755_SNP [dm3] 3R_26779033_SNP [dm6]	G	A	2.331e^-5	0.318	INTERGENIC
2R	9631995	2R_9631995_DEL [dm3] 2R_13744490_DEL [dm6]	GT	G	2.364e^-5	0.318	INTRON fas
2R	10718042	2R_10718042_SNP [dm3] 2R_14830537_SNP [dm6]	T	G	2.378e^-5	0.318	INTERGENIC
2R	14009632	2R_14009632_SNP [dm3] 2R_18122127_SNP [dm6]	G	T	2.407e^-5	0.318	SYNONYMOUS_CODING stau	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10153923	2R_10153923_INS [dm3] 2R_14266418_INS [dm6]	A	AATCG	2.412e^-5	0.318	INTRON CG8547
3L	16417216	3L_16417216_SNP [dm3] 3L_16424116_SNP [dm6]	A	T	2.423e^-5	0.318	INTRON CG33158 & 1 other
3L	16417217	3L_16417217_SNP [dm3] 3L_16424117_SNP [dm6]	A	T	2.423e^-5	0.318	INTRON CG33158 & 1 other
X	4222895	X_4222895_SNP [dm3] X_4328862_SNP [dm6]	C	T	2.447e^-5	0.318	INTRON norpA & 1 other	TF binding site BDTNP1_TFBS_twi
2R	10676796	2R_10676796_SNP [dm3] 2R_14789291_SNP [dm6]	A	T	2.472e^-5	0.318	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	11973788	2R_11973788_SNP [dm3] 2R_16086283_SNP [dm6]	A	G	2.496e^-5	0.318	NON_SYNONYMOUS_CODING Dg INTRON Dg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10585596	2R_10585596_SNP [dm3] 2R_14698091_SNP [dm6]	A	T	2.496e^-5	0.318	INTRON mspo
2R	10748008	2R_10748008_SNP [dm3] 2R_14860503_SNP [dm6]	A	G	2.503e^-5	0.318	SYNONYMOUS_CODING U3-55K DOWNSTREAM Inr-a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	4049714	X_4049714_INS [dm3] X_4155681_INS [dm6]	A	AA	2.512e^-5	0.318	INTRON Fas2
X	9471620	X_9471620_SNP [dm3] X_9577587_SNP [dm6]	G	T	2.579e^-5	0.321	INTRON CG32699
2R	10508071	2R_10508071_SNP [dm3] 2R_14620566_SNP [dm6]	G	T	2.587e^-5	0.321	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	9385603	3R_9385603_SNP [dm3] 3R_13559881_SNP [dm6]	C	T	2.594e^-5	0.321	INTERGENIC
2L	4264252	2L_4264252_SNP [dm3] 2L_4264252_SNP [dm6]	C	A	2.601e^-5	0.321	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10154268	2R_10154268_SNP [dm3] 2R_14266763_SNP [dm6]	T	C	2.616e^-5	0.321	INTRON CG8547
2R	10612175	2R_10612175_SNP [dm3] 2R_14724670_SNP [dm6]	A	G	2.634e^-5	0.321	INTERGENIC
2R	15595811	2R_15595811_SNP [dm3] 2R_19708306_SNP [dm6]	C	A	2.724e^-5	0.328	INTERGENIC
2R	7474789	2R_7474789_SNP [dm3] 2R_11587284_SNP [dm6]	G	A	2.730e^-5	0.328	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	10155724	2R_10155724_SNP [dm3] 2R_14268219_SNP [dm6]	A	C	2.761e^-5	0.328	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8389562	2L_8389562_SNP [dm3] 2L_8389562_SNP [dm6]	A	T	2.763e^-5	0.328	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2R	10151359	2R_10151359_SNP [dm3] 2R_14263854_SNP [dm6]	G	T	2.854e^-5	0.337	INTRON CG8547	TF binding site mE1_TFBS_cad
2R	10585592	2R_10585592_SNP [dm3] 2R_14698087_SNP [dm6]	T	A	2.878e^-5	0.337	INTRON mspo
2L	21967147	2L_21967147_SNP [dm3] 2L_21967147_SNP [dm6]	A	G	2.910e^-5	0.339	INTERGENIC
3L	21585637	3L_21585637_SNP [dm3] 3L_21592537_SNP [dm6]	C	T	2.943e^-5	0.341	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16069947	X_16069947_SNP [dm3] X_16175914_SNP [dm6]	A	G	2.989e^-5	0.342	INTERGENIC
2R	10676777	2R_10676777_SNP [dm3] 2R_14789272_SNP [dm6]	C	T	3.000e^-5	0.342	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	16156083	2R_16156083_SNP [dm3] 2R_20268578_SNP [dm6]	G	C	3.006e^-5	0.342	INTRON CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2765384	X_2765384_SNP [dm3] X_2871351_SNP [dm6]	T	C	3.044e^-5	0.342	DOWNSTREAM CG14416 INTRON kirre
X	13875980	X_13875980_SNP [dm3] X_13981947_SNP [dm6]	T	C	3.090e^-5	0.342	INTRON mamo
3L	12710777	3L_12710777_SNP [dm3] 3L_12717677_SNP [dm6]	G	T	3.125e^-5	0.342	INTERGENIC
3L	13442368	3L_13442368_SNP [dm3] 3L_13449268_SNP [dm6]	C	T	3.135e^-5	0.342	UTR_3_PRIME CG10133 DOWNSTREAM CG10732	TF binding site mE1_TFBS_cad
X	15106863	X_15106863_SNP [dm3] X_15212830_SNP [dm6]	C	G	3.186e^-5	0.342	INTERGENIC
X	11031712	X_11031712_SNP [dm3] X_11137679_SNP [dm6]	T	C	3.242e^-5	0.342	UPSTREAM Klp10A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
X	12747441	X_12747441_SNP [dm3] X_12853408_SNP [dm6]	T	A	3.263e^-5	0.342	INTRON Pde9
2R	15203387	2R_15203387_SNP [dm3] 2R_19315882_SNP [dm6]	T	C	3.317e^-5	0.342	INTRON Rgk1
2R	3819100	2R_3819100_SNP [dm3] 2R_7931595_SNP [dm6]	T	G	3.325e^-5	0.342	UPSTREAM CG30381 & 1 other INTRON rnh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	22265534	3R_22265534_DEL [dm3] 3R_26439812_DEL [dm6]	CTG	C	3.326e^-5	0.342	UPSTREAM tx INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	10612541	2R_10612541_SNP [dm3] 2R_14725036_SNP [dm6]	G	A	3.357e^-5	0.342	INTERGENIC
2L	6004062	2L_6004062_SNP [dm3] 2L_6004062_SNP [dm6]	T	G	3.378e^-5	0.342	SYNONYMOUS_CODING Gal UPSTREAM CR43866 DOWNSTREAM Tsp26A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21283475	X_21283475_SNP [dm3] X_21412448_SNP [dm6]	A	C	3.402e^-5	0.342	INTERGENIC
2R	5968193	2R_5968193_SNP [dm3] 2R_10080688_SNP [dm6]	T	C	3.406e^-5	0.342	DOWNSTREAM scaRNA:MeU1b-A234 INTRON egr
3R	10412350	3R_10412350_SNP [dm3] 3R_14586628_SNP [dm6]	A	G	3.408e^-5	0.342	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	995434	2L_995434_SNP [dm3] 2L_995434_SNP [dm6]	A	G	3.412e^-5	0.342	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	995436	2L_995436_SNP [dm3] 2L_995436_SNP [dm6]	C	T	3.412e^-5	0.342	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7474782	2R_7474782_SNP [dm3] 2R_11587277_SNP [dm6]	G	T	3.421e^-5	0.342	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	19047041	2R_19047041_SNP [dm3] 2R_23159518_SNP [dm6]	C	A	3.436e^-5	0.342	NON_SYNONYMOUS_CODING CG9899
2R	10612529	2R_10612529_SNP [dm3] 2R_14725024_SNP [dm6]	T	C	3.443e^-5	0.342	INTERGENIC
2R	15864853	2R_15864853_SNP [dm3] 2R_19977348_SNP [dm6]	G	C	3.462e^-5	0.342	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17673330	X_17673330_SNP [dm3] X_17779297_SNP [dm6]	C	A	3.469e^-5	0.342	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	7830446	3L_7830446_SNP [dm3] 3L_7837346_SNP [dm6]	A	G	3.483e^-5	0.342	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2R	13095744	2R_13095744_SNP [dm3] 2R_17208239_SNP [dm6]	A	G	3.501e^-5	0.342	INTERGENIC
3R	9457267	3R_9457267_SNP [dm3] 3R_13631545_SNP [dm6]	G	C	3.526e^-5	0.342	UPSTREAM CG10841 & 1 other INTERGENIC
X	8727028	X_8727028_SNP [dm3] X_8832995_SNP [dm6]	G	T	3.532e^-5	0.342	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10622249	2R_10622249_SNP [dm3] 2R_14734744_SNP [dm6]	C	A	3.538e^-5	0.342	INTERGENIC
2R	7476111	2R_7476111_SNP [dm3] 2R_11588606_SNP [dm6]	C	G	3.554e^-5	0.342	SYNONYMOUS_CODING tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad
3R	7748772	3R_7748772_INS [dm3] 3R_11923050_INS [dm6]	C	CT	3.567e^-5	0.342	INTRON Cad87A
3R	4520297	3R_4520297_SNP [dm3] 3R_8694575_SNP [dm6]	A	T	3.567e^-5	0.342	UTR_5_PRIME hb INTRON hb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1865630	2L_1865630_SNP [dm3] 2L_1865630_SNP [dm6]	A	G	3.585e^-5	0.342	SYNONYMOUS_CODING CG31663
2L	2355935	2L_2355935_DEL [dm3] 2L_2355935_DEL [dm6]	ATGAAGA	A	3.588e^-5	0.342	INTRON CG9967 & 1 other
3R	14122915	3R_14122915_SNP [dm3] 3R_18297193_SNP [dm6]	G	A	3.634e^-5	0.344	INTRON l_3_05822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13095860	2R_13095860_SNP [dm3] 2R_17208355_SNP [dm6]	T	A	3.673e^-5	0.344	INTERGENIC
3R	15620155	3R_15620155_DEL [dm3] 3R_19794433_DEL [dm6]	AA	A	3.689e^-5	0.344	DOWNSTREAM bnl INTRON bnl
4	982065	4_982065_SNP [dm3] 4_961439_SNP [dm6]	G	T	3.720e^-5	0.344	DOWNSTREAM fuss INTRON CR44030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9261424	2L_9261424_SNP [dm3] 2L_9261424_SNP [dm6]	G	A	3.766e^-5	0.344	DOWNSTREAM CR45262 INTRON Ggamma30A
2R	10156203	2R_10156203_SNP [dm3] 2R_14268698_SNP [dm6]	T	C	3.779e^-5	0.344	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC
3R	10412459	3R_10412459_SNP [dm3] 3R_14586737_SNP [dm6]	T	A	3.817e^-5	0.344	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	5097610	X_5097610_INS [dm3] X_5203577_INS [dm6]	T	TT	3.831e^-5	0.344	INTRON CG15465 & 1 other
X	19601452	X_19601452_SNP [dm3] X_19707419_SNP [dm6]	G	A	3.853e^-5	0.344	SYNONYMOUS_CODING meso18E	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19653100	3L_19653100_SNP [dm3] 3L_19660000_SNP [dm6]	G	T	3.868e^-5	0.344	INTRON tey
2R	18051252	2R_18051252_SNP [dm3] 2R_22163747_SNP [dm6]	G	T	3.869e^-5	0.344	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
2R	10443407	2R_10443407_SNP [dm3] 2R_14555902_SNP [dm6]	T	C	3.869e^-5	0.344	INTRON ttv
2R	10153715	2R_10153715_SNP [dm3] 2R_14266210_SNP [dm6]	A	T	3.876e^-5	0.344	INTRON CG8547
2R	15436212	2R_15436212_SNP [dm3] 2R_19548707_SNP [dm6]	C	T	3.892e^-5	0.344	INTRON sm
3R	10412466	3R_10412466_SNP [dm3] 3R_14586744_SNP [dm6]	T	G	3.893e^-5	0.344	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	16555255	X_16555255_SNP [dm3] X_16661222_SNP [dm6]	T	C	4.009e^-5	0.352	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
2R	10154275	2R_10154275_SNP [dm3] 2R_14266770_SNP [dm6]	A	G	4.018e^-5	0.352	INTRON CG8547
2R	18051253	2R_18051253_INS [dm3] 2R_22163748_INS [dm6]	C	CAAAAT	4.048e^-5	0.353	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
2L	14460134	2L_14460134_SNP [dm3] 2L_14460134_SNP [dm6]	T	A	4.104e^-5	0.355	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10160983	2R_10160983_SNP [dm3] 2R_14273478_SNP [dm6]	C	G	4.123e^-5	0.355	INTRON conv
2R	10442745	2R_10442745_SNP [dm3] 2R_14555240_SNP [dm6]	T	C	4.139e^-5	0.355	UPSTREAM CG43919 INTRON ttv
3L	21788513	3L_21788513_SNP [dm3] 3L_21795413_SNP [dm6]	G	A	4.143e^-5	0.355	INTERGENIC
2R	4969919	2R_4969919_SNP [dm3] 2R_9082414_SNP [dm6]	A	C	4.193e^-5	0.356	UTR_5_PRIME CNT1 DOWNSTREAM CG8083
X	16131963	X_16131963_SNP [dm3] X_16237930_SNP [dm6]	A	T	4.220e^-5	0.356	INTERGENIC
2R	12971953	2R_12971953_SNP [dm3] 2R_17084448_SNP [dm6]	C	G	4.231e^-5	0.356	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1594465	3R_1594465_SNP [dm3] 3R_5768743_SNP [dm6]	C	A	4.233e^-5	0.356	INTRON CG2082
2R	10444580	2R_10444580_SNP [dm3] 2R_14557075_SNP [dm6]	T	A	4.259e^-5	0.357	INTRON ttv
2L	3392446	2L_3392446_SNP [dm3] 2L_3392446_SNP [dm6]	A	G	4.293e^-5	0.358	INTERGENIC
2R	11704581	2R_11704581_SNP [dm3] 2R_15817076_SNP [dm6]	A	G	4.308e^-5	0.358	UPSTREAM Zasp52 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10151413	2R_10151413_SNP [dm3] 2R_14263908_SNP [dm6]	C	T	4.343e^-5	0.358	SYNONYMOUS_CODING CG8547	TF binding site mE1_TFBS_cad
3R	11138054	3R_11138054_SNP [dm3] 3R_15312332_SNP [dm6]	T	A	4.355e^-5	0.358	UPSTREAM Tm2 INTRON Tm2
2L	19906799	2L_19906799_SNP [dm3] 2L_19906799_SNP [dm6]	A	G	4.402e^-5	0.36	INTRON sick
2R	13803252	2R_13803252_DEL [dm3] 2R_17915747_DEL [dm6]	AT	A	4.442e^-5	0.36	INTRON Elk
2R	18319533	2R_18319533_DEL [dm3] 2R_22432028_DEL [dm6]	TCTG	T	4.447e^-5	0.36	INTERGENIC
2R	18051256	2R_18051256_INS [dm3] 2R_22163751_INS [dm6]	A	ATA	4.464e^-5	0.36	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
2R	7466905	2R_7466905_SNP [dm3] 2R_11579400_SNP [dm6]	T	C	4.474e^-5	0.36	UTR_3_PRIME tou DOWNSTREAM tou
2L	12200695	2L_12200695_SNP [dm3] 2L_12200695_SNP [dm6]	G	T	4.539e^-5	0.363	UPSTREAM aret INTRON aret
X	19666811	X_19666811_SNP [dm3] X_19772778_SNP [dm6]	T	A	4.543e^-5	0.363	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11568913	2L_11568913_SNP [dm3] 2L_11568913_SNP [dm6]	C	T	4.575e^-5	0.364	INTERGENIC
2R	14702852	2R_14702852_SNP [dm3] 2R_18815347_SNP [dm6]	G	C	4.597e^-5	0.364	UTR_5_PRIME CG15096 UPSTREAM CG15096 EXON CR43418
3R	14123026	3R_14123026_SNP [dm3] 3R_18297304_SNP [dm6]	T	C	4.646e^-5	0.366	INTRON l_3_05822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7810073	X_7810073_SNP [dm3] X_7916040_SNP [dm6]	T	C	4.677e^-5	0.367	SYNONYMOUS_CODING snz
2L	7006930	2L_7006930_SNP [dm3] 2L_7006930_SNP [dm6]	C	T	4.761e^-5	0.372	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	10168194	3L_10168194_SNP [dm3] 3L_10175094_SNP [dm6]	T	C	4.858e^-5	0.374	INTRON dpr10
3L	14689120	3L_14689120_SNP [dm3] 3L_14696020_SNP [dm6]	G	A	4.872e^-5	0.374	DOWNSTREAM CG13474 INTRON ome
3L	13441934	3L_13441934_SNP [dm3] 3L_13448834_SNP [dm6]	T	A	4.886e^-5	0.374	NON_SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
2L	9304519	2L_9304519_SNP [dm3] 2L_9304519_SNP [dm6]	G	A	4.889e^-5	0.374	EXON CR42844
3R	20068459	3R_20068459_SNP [dm3] 3R_24242737_SNP [dm6]	C	T	4.902e^-5	0.374	SYNONYMOUS_CODING mask	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15863824	2R_15863824_SNP [dm3] 2R_19976319_SNP [dm6]	C	T	4.923e^-5	0.374	INTERGENIC
X	19710956	X_19710956_SNP [dm3] X_19816923_SNP [dm6]	C	T	4.930e^-5	0.374	DOWNSTREAM skpC INTERGENIC
2L	4374910	2L_4374910_SNP [dm3] 2L_4374910_SNP [dm6]	T	C	4.974e^-5	0.376	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18278268	3L_18278268_SNP [dm3] 3L_18285168_SNP [dm6]	A	G	5.001e^-5	0.376	INTERGENIC
2R	15595812	2R_15595812_SNP [dm3] 2R_19708307_SNP [dm6]	G	A	5.012e^-5	0.376	INTERGENIC
2R	8587803	2R_8587803_SNP [dm3] 2R_12700298_SNP [dm6]	G	T	5.131e^-5	0.383	SPLICE_SITE_REGION wuc UTR_5_PRIME wuc
3L	8244832	3L_8244832_SNP [dm3] 3L_8251732_SNP [dm6]	A	G	5.155e^-5	0.384	INTRON Dscam4
2R	4511520	2R_4511520_SNP [dm3] 2R_8624015_SNP [dm6]	T	G	5.191e^-5	0.385	UTR_3_PRIME Cirl
2L	18904016	2L_18904016_SNP [dm3] 2L_18904016_SNP [dm6]	A	G	5.268e^-5	0.387	INTERGENIC
3R	15628567	3R_15628567_SNP [dm3] 3R_19802845_SNP [dm6]	A	G	5.275e^-5	0.387	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18278274	3L_18278274_SNP [dm3] 3L_18285174_SNP [dm6]	C	G	5.284e^-5	0.387	INTERGENIC
2R	10711858	2R_10711858_SNP [dm3] 2R_14824353_SNP [dm6]	A	G	5.298e^-5	0.387	EXON CR45329
2R	20164042	2R_20164042_SNP [dm3] 2R_24276519_SNP [dm6]	G	T	5.351e^-5	0.389	INTRON nvy	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	15595908	2R_15595908_SNP [dm3] 2R_19708403_SNP [dm6]	A	C	5.410e^-5	0.39	INTERGENIC
X	9063482	X_9063482_SNP [dm3] X_9169449_SNP [dm6]	T	C	5.418e^-5	0.39	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15765306	3L_15765306_SNP [dm3] 3L_15772206_SNP [dm6]	A	G	5.441e^-5	0.39	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2578564	X_2578564_SNP [dm3] X_2684531_SNP [dm6]	G	A	5.450e^-5	0.39	UPSTREAM CR44470 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10453850	2R_10453850_SNP [dm3] 2R_14566345_SNP [dm6]	T	C	5.491e^-5	0.39	INTRON ttv
2R	14515931	2R_14515931_SNP [dm3] 2R_18628426_SNP [dm6]	G	A	5.496e^-5	0.39	SYNONYMOUS_CODING Eip55E DOWNSTREAM Sec6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21283843	X_21283843_INS [dm3] X_21412816_INS [dm6]	T	TATATT	5.528e^-5	0.391	INTERGENIC
2L	13003932	2L_13003932_SNP [dm3] 2L_13003932_SNP [dm6]	C	G	5.579e^-5	0.393	UPSTREAM Tor INTRON Vha68-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h
2L	7064675	2L_7064675_SNP [dm3] 2L_7064675_SNP [dm6]	C	A	5.628e^-5	0.395	NON_SYNONYMOUS_CODING Nuf2 DOWNSTREAM Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	18319287	2R_18319287_SNP [dm3] 2R_22431782_SNP [dm6]	C	A	5.656e^-5	0.396	INTERGENIC
X	16069939	X_16069939_SNP [dm3] X_16175906_SNP [dm6]	G	A	5.728e^-5	0.397	INTERGENIC
X	7810058	X_7810058_SNP [dm3] X_7916025_SNP [dm6]	G	A	5.738e^-5	0.397	SYNONYMOUS_CODING snz
X	7810029	X_7810029_SNP [dm3] X_7915996_SNP [dm6]	T	C	5.761e^-5	0.397	INTRON snz
3R	14122929	3R_14122929_SNP [dm3] 3R_18297207_SNP [dm6]	G	A	5.779e^-5	0.397	INTRON l_3_05822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13391793	3L_13391793_SNP [dm3] 3L_13398693_SNP [dm6]	A	G	5.849e^-5	0.397	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	12747450	X_12747450_SNP [dm3] X_12853417_SNP [dm6]	G	A	5.855e^-5	0.397	INTRON Pde9
2L	2640409	2L_2640409_SNP [dm3] 2L_2640409_SNP [dm6]	A	G	5.886e^-5	0.397	INTERGENIC
2R	10443114	2R_10443114_SNP [dm3] 2R_14555609_SNP [dm6]	T	C	5.888e^-5	0.397	INTRON ttv
2R	13512396	2R_13512396_SNP [dm3] 2R_17624891_SNP [dm6]	G	C	5.911e^-5	0.397	INTRON CG10936
2R	7484706	2R_7484706_SNP [dm3] 2R_11597201_SNP [dm6]	A	T	5.928e^-5	0.397	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12142383	2L_12142383_SNP [dm3] 2L_12142383_SNP [dm6]	A	T	5.931e^-5	0.397	UPSTREAM CG31760 INTERGENIC
2R	4566853	2R_4566853_SNP [dm3] 2R_8679348_SNP [dm6]	T	C	5.954e^-5	0.397	NON_SYNONYMOUS_CODING CG30355 INTRON Acsl
2R	13717995	2R_13717995_INS [dm3] 2R_17830490_INS [dm6]	A	AA	5.962e^-5	0.397	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd
2R	14706717	2R_14706717_SNP [dm3] 2R_18819212_SNP [dm6]	A	G	5.965e^-5	0.397	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	17885434	X_17885434_SNP [dm3] X_17991401_SNP [dm6]	C	T	6.005e^-5	0.398	UPSTREAM Sh INTRON Sh	TF binding site mE1_TFBS_chinmo
2R	4969288	2R_4969288_SNP [dm3] 2R_9081783_SNP [dm6]	G	A	6.091e^-5	0.398	SYNONYMOUS_CODING CG8083 UPSTREAM CNT1
2R	10886736	2R_10886736_SNP [dm3] 2R_14999231_SNP [dm6]	T	C	6.092e^-5	0.398	INTERGENIC
2R	4539790	2R_4539790_SNP [dm3] 2R_8652285_SNP [dm6]	T	C	6.095e^-5	0.398	UPSTREAM CR44281 INTRON ptc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	21283856	X_21283856_SNP [dm3] X_21412829_SNP [dm6]	A	T	6.123e^-5	0.398	INTERGENIC
3L	19771874	3L_19771874_SNP [dm3] 3L_19778774_SNP [dm6]	C	A	6.125e^-5	0.398	INTRON CG42637 & 1 other
3L	11480146	3L_11480146_SNP [dm3] 3L_11487046_SNP [dm6]	G	A	6.136e^-5	0.398	UPSTREAM chrb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Trl
2L	19918941	2L_19918941_SNP [dm3] 2L_19918941_SNP [dm6]	G	A	6.160e^-5	0.398	UPSTREAM CR43828 INTRON sick
2R	6448826	2R_6448826_SNP [dm3] 2R_10561321_SNP [dm6]	T	C	6.169e^-5	0.398	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4582279	2L_4582279_SNP [dm3] 2L_4582279_SNP [dm6]	A	T	6.192e^-5	0.398	INTRON dp EXON CR43716
3L	13442390	3L_13442390_SNP [dm3] 3L_13449290_SNP [dm6]	A	C	6.255e^-5	0.4	UTR_3_PRIME CG10133 DOWNSTREAM CG10732	TF binding site mE1_TFBS_cad
2L	3830037	2L_3830037_SNP [dm3] 2L_3830037_SNP [dm6]	A	C	6.262e^-5	0.4	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8730976	2R_8730976_SNP [dm3] 2R_12843471_SNP [dm6]	G	A	6.308e^-5	0.401	SYNONYMOUS_CODING Or49b UPSTREAM Cyp9h1	TF binding site BDTNP1_TFBS_twi
2R	8353166	2R_8353166_SNP [dm3] 2R_12465661_SNP [dm6]	T	A	6.379e^-5	0.404	DOWNSTREAM dgt5 & 1 other INTERGENIC
2R	10622212	2R_10622212_SNP [dm3] 2R_14734707_SNP [dm6]	G	A	6.409e^-5	0.404	INTERGENIC
3L	21153405	3L_21153405_SNP [dm3] 3L_21160305_SNP [dm6]	C	T	6.436e^-5	0.404	INTRON Ac78C
3L	18278271	3L_18278271_SNP [dm3] 3L_18285171_SNP [dm6]	A	G	6.450e^-5	0.404	INTERGENIC
X	9642616	X_9642616_DEL [dm3] X_9748583_DEL [dm6]	CTTC	C	6.465e^-5	0.404	INTRON Sp1
X	20418562	X_20418562_SNP [dm3] X_20547535_SNP [dm6]	A	G	6.494e^-5	0.404	INTRON RunxB
3L	12897596	3L_12897596_SNP [dm3] 3L_12904496_SNP [dm6]	G	T	6.497e^-5	0.404	UPSTREAM CG32117 INTERGENIC
2L	8389640	2L_8389640_SNP [dm3] 2L_8389640_SNP [dm6]	T	G	6.551e^-5	0.405	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2L	5737537	2L_5737537_SNP [dm3] 2L_5737537_SNP [dm6]	T	G	6.578e^-5	0.405	INTRON CG11030 & 1 other
2L	2358051	2L_2358051_SNP [dm3] 2L_2358051_SNP [dm6]	C	T	6.642e^-5	0.405	UTR_3_PRIME eys UPSTREAM CG9967
X	15577834	X_15577834_SNP [dm3] X_15683801_SNP [dm6]	A	G	6.656e^-5	0.405	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14513849	2R_14513849_SNP [dm3] 2R_18626344_SNP [dm6]	T	C	6.673e^-5	0.405	INTRON Sec6	TF binding site mE1_TFBS_sens
3R	15833394	3R_15833394_SNP [dm3] 3R_20007672_SNP [dm6]	C	T	6.718e^-5	0.405	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	9609657	X_9609657_SNP [dm3] X_9715624_SNP [dm6]	G	T	6.726e^-5	0.405	INTERGENIC
2R	10585662	2R_10585662_SNP [dm3] 2R_14698157_SNP [dm6]	A	C	6.733e^-5	0.405	INTRON mspo
2L	995417	2L_995417_SNP [dm3] 2L_995417_SNP [dm6]	A	T	6.854e^-5	0.405	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	2578629	X_2578629_SNP [dm3] X_2684596_SNP [dm6]	G	A	6.862e^-5	0.405	UPSTREAM CR44470 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8389560	2L_8389560_SNP [dm3] 2L_8389560_SNP [dm6]	T	G	6.873e^-5	0.405	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
3R	25801733	3R_25801733_SNP [dm3] 3R_29976011_SNP [dm6]	C	T	6.879e^-5	0.405	INTERGENIC
3R	5654877	3R_5654877_SNP [dm3] 3R_9829155_SNP [dm6]	G	A	6.904e^-5	0.405	INTRON Teh1
2R	10156684	2R_10156684_SNP [dm3] 2R_14269179_SNP [dm6]	G	A	6.906e^-5	0.405	SYNONYMOUS_CODING SelD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	20852394	3R_20852394_SNP [dm3] 3R_25026672_SNP [dm6]	A	G	6.930e^-5	0.405	SYNONYMOUS_CODING Hr96
2R	10535041	2R_10535041_SNP [dm3] 2R_14647536_SNP [dm6]	T	A	6.931e^-5	0.405	INTERGENIC
3R	22039539	3R_22039539_SNP [dm3] 3R_26213817_SNP [dm6]	G	C	6.992e^-5	0.405	INTERGENIC
X	16131955	X_16131955_SNP [dm3] X_16237922_SNP [dm6]	A	T	7.000e^-5	0.405	INTERGENIC
2R	11049033	2R_11049033_SNP [dm3] 2R_15161528_SNP [dm6]	C	A	7.001e^-5	0.405	INTRON igl
3R	11137999	3R_11137999_SNP [dm3] 3R_15312277_SNP [dm6]	A	G	7.029e^-5	0.405	UPSTREAM Tm2 INTRON Tm2
2L	17927212	2L_17927212_SNP [dm3] 2L_17927212_SNP [dm6]	T	A	7.056e^-5	0.405	INTERGENIC
2L	1365876	2L_1365876_SNP [dm3] 2L_1365876_SNP [dm6]	A	C	7.082e^-5	0.405	INTERGENIC
2L	7069230	2L_7069230_SNP [dm3] 2L_7069230_SNP [dm6]	T	A	7.122e^-5	0.405	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2
2L	9259902	2L_9259902_DEL [dm3] 2L_9259902_DEL [dm6]	CTCTTC	C	7.127e^-5	0.405	INTRON Ggamma30A
2L	3401555	2L_3401555_SNP [dm3] 2L_3401555_SNP [dm6]	G	T	7.193e^-5	0.405	INTERGENIC
3L	11429726	3L_11429726_SNP [dm3] 3L_11436626_SNP [dm6]	C	A	7.226e^-5	0.405	DOWNSTREAM CR44548 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9986047	X_9986047_SNP [dm3] X_10092014_SNP [dm6]	A	T	7.286e^-5	0.405	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15869005	2R_15869005_SNP [dm3] 2R_19981500_SNP [dm6]	T	C	7.290e^-5	0.405	UPSTREAM CG8654 INTRON CG8654	TF binding site mE1_TFBS_cad
3L	7840295	3L_7840295_SNP [dm3] 3L_7847195_SNP [dm6]	G	C	7.304e^-5	0.405	INTRON Pdp1
2R	8701950	2R_8701950_SNP [dm3] 2R_12814445_SNP [dm6]	T	G	7.321e^-5	0.405	INTERGENIC
X	13265926	X_13265926_SNP [dm3] X_13371893_SNP [dm6]	C	T	7.331e^-5	0.405	INTRON CG1640	TF binding site BDTNP1_TFBS_dl
2R	10700592	2R_10700592_SNP [dm3] 2R_14813087_SNP [dm6]	G	A	7.400e^-5	0.405	INTERGENIC
2L	7967558	2L_7967558_SNP [dm3] 2L_7967558_SNP [dm6]	A	G	7.410e^-5	0.405	INTRON Snoo
3L	577366	3L_577366_SNP [dm3] 3L_577366_SNP [dm6]	G	C	7.413e^-5	0.405	UTR_3_PRIME hipk
2R	10672495	2R_10672495_SNP [dm3] 2R_14784990_SNP [dm6]	C	A	7.424e^-5	0.405	INTRON kn
3R	25801715	3R_25801715_SNP [dm3] 3R_29975993_SNP [dm6]	A	G	7.435e^-5	0.405	INTERGENIC
X	21283482	X_21283482_SNP [dm3] X_21412455_SNP [dm6]	T	C	7.452e^-5	0.405	INTERGENIC
2R	10151358	2R_10151358_SNP [dm3] 2R_14263853_SNP [dm6]	T	C	7.492e^-5	0.405	INTRON CG8547	TF binding site mE1_TFBS_cad
3L	14689118	3L_14689118_SNP [dm3] 3L_14696018_SNP [dm6]	T	A	7.516e^-5	0.405	DOWNSTREAM CG13474 INTRON ome
2L	9453354	2L_9453354_SNP [dm3] 2L_9453354_SNP [dm6]	A	G	7.524e^-5	0.405	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18108947	X_18108947_SNP [dm3] X_18214914_SNP [dm6]	C	A	7.545e^-5	0.405	INTRON CG33639
3L	16412664	3L_16412664_SNP [dm3] 3L_16419564_SNP [dm6]	G	A	7.556e^-5	0.405	UPSTREAM CG33158 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	10153693	2R_10153693_SNP [dm3] 2R_14266188_SNP [dm6]	G	A	7.597e^-5	0.405	INTRON CG8547
3R	25223305	3R_25223305_SNP [dm3] 3R_29397583_SNP [dm6]	G	A	7.622e^-5	0.405	INTRON Ptp99A
3L	12135424	3L_12135424_SNP [dm3] 3L_12142324_SNP [dm6]	T	C	7.667e^-5	0.405	SYNONYMOUS_CODING RhoGAP68F
2L	9255723	2L_9255723_SNP [dm3] 2L_9255723_SNP [dm6]	T	C	7.669e^-5	0.405	UPSTREAM lectin-30A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z
4	542406	4_542406_SNP [dm3] 4_521780_SNP [dm6]	T	C	7.707e^-5	0.405	SYNONYMOUS_CODING zfh2
2R	7476157	2R_7476157_SNP [dm3] 2R_11588652_SNP [dm6]	A	T	7.741e^-5	0.405	UPSTREAM snoRNA:Psi28S-1936 INTRON tou	TF binding site mE1_TFBS_cad
X	7807023	X_7807023_SNP [dm3] X_7912990_SNP [dm6]	A	G	7.759e^-5	0.405	INTRON snz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	7807540	X_7807540_SNP [dm3] X_7913507_SNP [dm6]	A	G	7.759e^-5	0.405	SYNONYMOUS_CODING snz
X	8884850	X_8884850_SNP [dm3] X_8990817_SNP [dm6]	C	T	7.760e^-5	0.405	INTRON rdgA & 1 other
X	6091242	X_6091242_SNP [dm3] X_6197209_SNP [dm6]	T	C	7.841e^-5	0.405	SYNONYMOUS_CODING CG32751 UPSTREAM CG32750
2R	16156336	2R_16156336_SNP [dm3] 2R_20268831_SNP [dm6]	T	G	7.845e^-5	0.405	INTRON CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7807594	X_7807594_SNP [dm3] X_7913561_SNP [dm6]	G	A	7.871e^-5	0.405	SYNONYMOUS_CODING snz
3R	20505746	3R_20505746_SNP [dm3] 3R_24680024_SNP [dm6]	A	G	7.877e^-5	0.405	INTRON slo
2L	9254412	2L_9254412_SNP [dm3] 2L_9254412_SNP [dm6]	G	A	7.891e^-5	0.405	SYNONYMOUS_CODING lectin-30A
2R	10193310	2R_10193310_SNP [dm3] 2R_14305805_SNP [dm6]	G	A	7.917e^-5	0.405	INTERGENIC
2L	9258652	2L_9258652_SNP [dm3] 2L_9258652_SNP [dm6]	A	T	7.927e^-5	0.405	INTRON Ggamma30A
2R	12280044	2R_12280044_SNP [dm3] 2R_16392539_SNP [dm6]	G	A	7.931e^-5	0.405	INTRON Sema-2b	TF binding site mE1_TFBS_inv
2R	13512383	2R_13512383_SNP [dm3] 2R_17624878_SNP [dm6]	C	A	7.953e^-5	0.405	INTRON CG10936
X	16539151	X_16539151_SNP [dm3] X_16645118_SNP [dm6]	A	C	7.965e^-5	0.405	INTRON mthl1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7807284	X_7807284_SNP [dm3] X_7913251_SNP [dm6]	A	T	7.980e^-5	0.405	INTRON snz
2L	6002884	2L_6002884_SNP [dm3] 2L_6002884_SNP [dm6]	C	T	7.991e^-5	0.405	UTR_3_PRIME Tsp26A DOWNSTREAM Gal
2L	9252708	2L_9252708_SNP [dm3] 2L_9252708_SNP [dm6]	G	A	8.035e^-5	0.405	SYNONYMOUS_CODING borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10376657	2R_10376657_SNP [dm3] 2R_14489152_SNP [dm6]	C	T	8.076e^-5	0.405	INTRON L
3R	1136345	3R_1136345_SNP [dm3] 3R_5310623_SNP [dm6]	C	T	8.082e^-5	0.405	INTRON mtd
2R	17985770	2R_17985770_SNP [dm3] 2R_22098265_SNP [dm6]	A	G	8.094e^-5	0.405	INTRON CG11073
2R	10789262	2R_10789262_SNP [dm3] 2R_14901757_SNP [dm6]	A	G	8.103e^-5	0.405	UTR_3_PRIME Cyp317a1 & 1 other DOWNSTREAM Cyp317a1
2R	8446090	2R_8446090_SNP [dm3] 2R_12558585_SNP [dm6]	A	G	8.128e^-5	0.405	NON_SYNONYMOUS_CODING fra INTRON fra
2R	10578704	2R_10578704_SNP [dm3] 2R_14691199_SNP [dm6]	T	A	8.135e^-5	0.405	INTRON mspo
2R	14609918	2R_14609918_SNP [dm3] 2R_18722413_SNP [dm6]	A	T	8.231e^-5	0.405	INTRON Hs3st-A
X	21283710	X_21283710_INS [dm3] X_21412683_INS [dm6]	G	GTAACCATGG	8.253e^-5	0.405	INTERGENIC
2L	11729231	2L_11729231_SNP [dm3] 2L_11729231_SNP [dm6]	T	C	8.295e^-5	0.405	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19231494	3R_19231494_SNP [dm3] 3R_23405772_SNP [dm6]	T	A	8.307e^-5	0.405	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3L	16068334	3L_16068334_SNP [dm3] 3L_16075234_SNP [dm6]	A	C	8.328e^-5	0.405	INTRON Mbs	TF binding site BDTNP1_TFBS_twi
2R	6954493	2R_6954493_SNP [dm3] 2R_11066988_SNP [dm6]	T	G	8.342e^-5	0.405	INTRON luna
2R	10711948	2R_10711948_SNP [dm3] 2R_14824443_SNP [dm6]	G	A	8.349e^-5	0.405	UPSTREAM CR45329 INTERGENIC
2R	16156084	2R_16156084_SNP [dm3] 2R_20268579_SNP [dm6]	A	T	8.378e^-5	0.405	INTRON CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8702306	2R_8702306_SNP [dm3] 2R_12814801_SNP [dm6]	A	G	8.405e^-5	0.405	INTERGENIC
2L	17088640	2L_17088640_SNP [dm3] 2L_17088640_SNP [dm6]	G	A	8.414e^-5	0.405	UTR_3_PRIME CG12620
3R	25642824	3R_25642824_SNP [dm3] 3R_29817102_SNP [dm6]	T	C	8.429e^-5	0.405	SYNONYMOUS_CODING CG7829 UPSTREAM Vps16B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5694022	X_5694022_SNP [dm3] X_5799989_SNP [dm6]	C	T	8.465e^-5	0.405	INTERGENIC
4	625839	4_625839_SNP [dm3] 4_605213_SNP [dm6]	C	T	8.488e^-5	0.405	NON_SYNONYMOUS_CODING onecut	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	13442393	3L_13442393_SNP [dm3] 3L_13449293_SNP [dm6]	A	T	8.518e^-5	0.405	UTR_3_PRIME CG10133 DOWNSTREAM CG10732	TF binding site mE1_TFBS_cad
3L	2305673	3L_2305673_SNP [dm3] 3L_2305673_SNP [dm6]	C	T	8.532e^-5	0.405	INTERGENIC
3L	12319133	3L_12319133_SNP [dm3] 3L_12326033_SNP [dm6]	T	G	8.533e^-5	0.405	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7476182	2R_7476182_SNP [dm3] 2R_11588677_SNP [dm6]	T	A	8.545e^-5	0.405	UPSTREAM snoRNA:Psi28S-1936 INTRON tou	TF binding site mE1_TFBS_cad
2R	11003824	2R_11003824_SNP [dm3] 2R_15116319_SNP [dm6]	A	T	8.584e^-5	0.405	INTRON chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	21283758	X_21283758_SNP [dm3] X_21412731_SNP [dm6]	C	T	8.589e^-5	0.405	INTERGENIC
2L	10118020	2L_10118020_SNP [dm3] 2L_10118020_SNP [dm6]	G	T	8.597e^-5	0.405	NON_SYNONYMOUS_CODING CG34109 INTRON CG44153
4	394441	4_394441_SNP [dm3] 4_373815_SNP [dm6]	C	T	8.618e^-5	0.405	UTR_3_PRIME Hcf	transposable element FlyBase
2R	13094633	2R_13094633_SNP [dm3] 2R_17207128_SNP [dm6]	G	A	8.645e^-5	0.405	INTERGENIC
2R	17748265	2R_17748265_SNP [dm3] 2R_21860760_SNP [dm6]	A	T	8.657e^-5	0.405	UPSTREAM CG9294 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7748810	3R_7748810_SNP [dm3] 3R_11923088_SNP [dm6]	C	T	8.675e^-5	0.405	INTRON Cad87A
X	15970388	X_15970388_SNP [dm3] X_16076355_SNP [dm6]	T	G	8.696e^-5	0.405	UTR_3_PRIME Tob	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	25600877	3R_25600877_SNP [dm3] 3R_29775155_SNP [dm6]	C	T	8.708e^-5	0.405	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	7810003	X_7810003_SNP [dm3] X_7915970_SNP [dm6]	A	T	8.714e^-5	0.405	INTRON snz
3L	8244833	3L_8244833_SNP [dm3] 3L_8251733_SNP [dm6]	A	T	8.747e^-5	0.405	INTRON Dscam4
2L	6610646	2L_6610646_SNP [dm3] 2L_6610646_SNP [dm6]	A	C	8.756e^-5	0.405	UPSTREAM CG11050 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	8471214	3L_8471214_SNP [dm3] 3L_8478114_SNP [dm6]	T	A	8.786e^-5	0.405	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4265581	2L_4265581_INS [dm3] 2L_4265581_INS [dm6]	A	AACTATG	8.793e^-5	0.405	INTERGENIC
2R	10156804	2R_10156804_SNP [dm3] 2R_14269299_SNP [dm6]	A	G	8.796e^-5	0.405	SYNONYMOUS_CODING SelD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	4248616	2L_4248616_SNP [dm3] 2L_4248616_SNP [dm6]	G	A	8.812e^-5	0.405	INTRON CR44059
3L	885475	3L_885475_SNP [dm3] 3L_885475_SNP [dm6]	T	C	8.834e^-5	0.405	INTRON CG32479
2L	9202525	2L_9202525_SNP [dm3] 2L_9202525_SNP [dm6]	A	C	8.836e^-5	0.405	INTRON tai
2R	10578677	2R_10578677_SNP [dm3] 2R_14691172_SNP [dm6]	G	A	8.866e^-5	0.405	INTRON mspo
2R	16156079	2R_16156079_SNP [dm3] 2R_20268574_SNP [dm6]	C	T	8.885e^-5	0.405	INTRON CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10156115	2R_10156115_SNP [dm3] 2R_14268610_SNP [dm6]	T	C	8.900e^-5	0.405	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC
3R	19231428	3R_19231428_SNP [dm3] 3R_23405706_SNP [dm6]	A	G	8.945e^-5	0.405	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3L	8471433	3L_8471433_SNP [dm3] 3L_8478333_SNP [dm6]	C	T	8.952e^-5	0.405	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15628279	3R_15628279_SNP [dm3] 3R_19802557_SNP [dm6]	C	T	8.962e^-5	0.405	UPSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9262205	2L_9262205_SNP [dm3] 2L_9262205_SNP [dm6]	G	C	8.990e^-5	0.405	INTRON Ggamma30A EXON CR45262
2R	18051240	2R_18051240_MNP [dm3] 2R_22163735_MNP [dm6]	ACTAA	TGGTT	9.078e^-5	0.405	UTR_3_PRIME CG34206 DOWNSTREAM CG34206 INTRON a INTRAGENIC CG34206	TF binding site mE1_TFBS_cad
3L	16068847	3L_16068847_SNP [dm3] 3L_16075747_SNP [dm6]	C	T	9.080e^-5	0.405	NON_SYNONYMOUS_CODING Mbs INTRON Mbs	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21283751	X_21283751_SNP [dm3] X_21412724_SNP [dm6]	C	T	9.082e^-5	0.405	INTERGENIC
X	21283755	X_21283755_SNP [dm3] X_21412728_SNP [dm6]	T	A	9.082e^-5	0.405	INTERGENIC
X	9609698	X_9609698_SNP [dm3] X_9715665_SNP [dm6]	A	T	9.117e^-5	0.405	INTERGENIC
X	9609724	X_9609724_SNP [dm3] X_9715691_SNP [dm6]	G	C	9.117e^-5	0.405	INTERGENIC
X	9609768	X_9609768_SNP [dm3] X_9715735_SNP [dm6]	A	T	9.117e^-5	0.405	INTERGENIC
2R	8446084	2R_8446084_SNP [dm3] 2R_12558579_SNP [dm6]	A	G	9.121e^-5	0.405	NON_SYNONYMOUS_CODING fra INTRON fra
3L	18746686	3L_18746686_SNP [dm3] 3L_18753586_SNP [dm6]	T	A	9.158e^-5	0.406	INTRON ftz-f1
2R	16322573	2R_16322573_SNP [dm3] 2R_20435068_SNP [dm6]	A	T	9.220e^-5	0.407	INTRON CG12484
2L	9453312	2L_9453312_SNP [dm3] 2L_9453312_SNP [dm6]	G	A	9.231e^-5	0.407	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9577962	2L_9577962_SNP [dm3] 2L_9577962_SNP [dm6]	A	T	9.326e^-5	0.407	DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs
2L	13003982	2L_13003982_SNP [dm3] 2L_13003982_SNP [dm6]	C	T	9.330e^-5	0.407	UTR_5_PRIME Vha68-1 UPSTREAM Tor INTRON Vha68-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h
3R	9398435	3R_9398435_SNP [dm3] 3R_13572713_SNP [dm6]	C	T	9.368e^-5	0.407	INTERGENIC
2R	10180722	2R_10180722_SNP [dm3] 2R_14293217_SNP [dm6]	G	A	9.374e^-5	0.407	UTR_3_PRIME Ih DOWNSTREAM Ih INTRON Ih
3L	22921126	3L_22921126_DEL [dm3] 3L_22928026_DEL [dm6]	AGC	A	9.374e^-5	0.407	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	15833423	3R_15833423_SNP [dm3] 3R_20007701_SNP [dm6]	A	G	9.392e^-5	0.407	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	2962379	2R_2962379_SNP [dm3] 2R_7074874_SNP [dm6]	G	A	9.395e^-5	0.407	UPSTREAM CG12831 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23831537	3R_23831537_SNP [dm3] 3R_28005815_SNP [dm6]	G	A	9.405e^-5	0.407	INTERGENIC
2R	10175020	2R_10175020_SNP [dm3] 2R_14287515_SNP [dm6]	T	C	9.484e^-5	0.41	UPSTREAM Ih INTRON Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	3895293	2L_3895293_SNP [dm3] 2L_3895293_SNP [dm6]	T	A	9.529e^-5	0.411	INTRON capu
2R	9632130	2R_9632130_SNP [dm3] 2R_13744625_SNP [dm6]	A	G	9.549e^-5	0.411	INTRON fas
2L	16401064	2L_16401064_SNP [dm3] 2L_16401064_SNP [dm6]	A	G	9.596e^-5	0.411	INTRON CG5888
X	11107878	X_11107878_SNP [dm3] X_11213845_SNP [dm6]	T	C	9.610e^-5	0.411	INTERGENIC
2R	9632106	2R_9632106_SNP [dm3] 2R_13744601_SNP [dm6]	A	T	9.622e^-5	0.411	INTRON fas
2L	4422629	2L_4422629_SNP [dm3] 2L_4422629_SNP [dm6]	T	G	9.660e^-5	0.411	INTRON CG15431
2R	10161403	2R_10161403_SNP [dm3] 2R_14273898_SNP [dm6]	C	T	9.668e^-5	0.411	SYNONYMOUS_CODING conv
2L	13004391	2L_13004391_SNP [dm3] 2L_13004391_SNP [dm6]	T	C	9.704e^-5	0.412	UPSTREAM Tor & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2305716	3L_2305716_SNP [dm3] 3L_2305716_SNP [dm6]	C	T	9.772e^-5	0.414	INTERGENIC
X	7809992	X_7809992_SNP [dm3] X_7915959_SNP [dm6]	T	A	9.807e^-5	0.414	INTRON snz
2R	14704160	2R_14704160_SNP [dm3] 2R_18816655_SNP [dm6]	C	T	9.872e^-5	0.415	UPSTREAM CG15096 INTERGENIC
2R	16285790	2R_16285790_SNP [dm3] 2R_20398285_SNP [dm6]	C	A	9.899e^-5	0.415	INTERGENIC
2L	10241404	2L_10241404_SNP [dm3] 2L_10241404_SNP [dm6]	G	A	9.901e^-5	0.415	SYNONYMOUS_CODING me31B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10239350	3L_10239350_SNP [dm3] 3L_10246250_SNP [dm6]	C	T	9.938e^-5	0.415	UPSTREAM CR44539 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1
X	2578652	X_2578652_SNP [dm3] X_2684619_SNP [dm6]	G	C	9.940e^-5	0.415	UPSTREAM CR44470 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	1623202	3R_1623202_SNP [dm3] 3R_5797480_SNP [dm6]	G	A	9.964e^-5	0.415	NON_SYNONYMOUS_CODING CG10979	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16545096	X_16545096_DEL [dm3] X_16651063_DEL [dm6]	TTG	T	1.001e^-4	0.416	UPSTREAM CG32573 & 1 other DOWNSTREAM mthl1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	2016520	3R_2016520_SNP [dm3] 3R_6190798_SNP [dm6]	G	C	1.005e^-4	0.417	INTRON NPFR	TF binding site mE1_TFBS_inv
3L	18746709	3L_18746709_SNP [dm3] 3L_18753609_SNP [dm6]	T	C	1.009e^-4	0.418	INTRON ftz-f1
X	4222894	X_4222894_SNP [dm3] X_4328861_SNP [dm6]	C	T	1.014e^-4	0.418	INTRON norpA & 1 other	TF binding site BDTNP1_TFBS_twi
3R	20663014	3R_20663014_SNP [dm3] 3R_24837292_SNP [dm6]	A	T	1.018e^-4	0.418	INTRON sosie
2R	19953016	2R_19953016_SNP [dm3] 2R_24065493_SNP [dm6]	G	A	1.019e^-4	0.418	DOWNSTREAM yki & 1 other INTERGENIC
X	21283840	X_21283840_SNP [dm3] X_21412813_SNP [dm6]	A	G	1.022e^-4	0.418	INTERGENIC
3L	13442394	3L_13442394_SNP [dm3] 3L_13449294_SNP [dm6]	C	T	1.022e^-4	0.418	UTR_3_PRIME CG10133 DOWNSTREAM CG10732	TF binding site mE1_TFBS_cad
2R	10155838	2R_10155838_SNP [dm3] 2R_14268333_SNP [dm6]	T	A	1.023e^-4	0.418	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC	TF binding site mE1_TFBS_Trl
3L	20909249	3L_20909249_SNP [dm3] 3L_20916149_SNP [dm6]	T	A	1.027e^-4	0.418	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18050570	2R_18050570_SNP [dm3] 2R_22163065_SNP [dm6]	A	C	1.028e^-4	0.418	NON_SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
2L	3401629	2L_3401629_SNP [dm3] 2L_3401629_SNP [dm6]	T	G	1.032e^-4	0.419	INTERGENIC
2R	10508081	2R_10508081_SNP [dm3] 2R_14620576_SNP [dm6]	C	T	1.036e^-4	0.419	DOWNSTREAM Sec61beta INTRON CG12863	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	4271986	2L_4271986_SNP [dm3] 2L_4271986_SNP [dm6]	G	A	1.036e^-4	0.419	INTERGENIC
X	16553740	X_16553740_SNP [dm3] X_16659707_SNP [dm6]	G	A	1.040e^-4	0.42	SYNONYMOUS_CODING r	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3302415	3L_3302415_SNP [dm3] 3L_3302415_SNP [dm6]	T	A	1.047e^-4	0.421	UTR_5_PRIME CG14968 INTRON CG14968
2L	13041185	2L_13041185_SNP [dm3] 2L_13041185_SNP [dm6]	G	A	1.061e^-4	0.424	INTRON CG9932
X	16545005	X_16545005_SNP [dm3] X_16650972_SNP [dm6]	C	T	1.064e^-4	0.424	UPSTREAM CG32573 & 1 other DOWNSTREAM mthl1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2R	16322567	2R_16322567_SNP [dm3] 2R_20435062_SNP [dm6]	G	T	1.065e^-4	0.424	INTRON CG12484
2L	9033156	2L_9033156_DEL [dm3] 2L_9033156_DEL [dm6]	TC	T	1.068e^-4	0.424	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	18746710	3L_18746710_SNP [dm3] 3L_18753610_SNP [dm6]	A	T	1.073e^-4	0.424	INTRON ftz-f1
2L	10870119	2L_10870119_SNP [dm3] 2L_10870119_SNP [dm6]	C	A	1.074e^-4	0.424	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10175044	2R_10175044_SNP [dm3] 2R_14287539_SNP [dm6]	A	T	1.077e^-4	0.424	UPSTREAM Ih INTRON Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	3602964	2L_3602964_SNP [dm3] 2L_3602964_SNP [dm6]	G	A	1.080e^-4	0.424	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	8673614	2R_8673614_SNP [dm3] 2R_12786109_SNP [dm6]	G	A	1.080e^-4	0.424	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15446455	X_15446455_SNP [dm3] X_15552422_SNP [dm6]	A	T	1.080e^-4	0.424	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20411620	X_20411620_SNP [dm3] X_20540593_SNP [dm6]	T	C	1.084e^-4	0.424	INTRON RunxB
2R	10155065	2R_10155065_SNP [dm3] 2R_14267560_SNP [dm6]	T	C	1.087e^-4	0.424	UPSTREAM CG8547 INTRON CG8547
X	15653110	X_15653110_SNP [dm3] X_15759077_SNP [dm6]	A	G	1.087e^-4	0.424	INTRON Graf	TF binding site BDTNP1_TFBS_twi
3R	25200952	3R_25200952_SNP [dm3] 3R_29375230_SNP [dm6]	G	T	1.087e^-4	0.424	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6724708	3R_6724708_SNP [dm3] 3R_10898986_SNP [dm6]	A	G	1.089e^-4	0.424	UPSTREAM CR45578 INTERGENIC
3R	19427052	3R_19427052_INS [dm3] 3R_23601330_INS [dm6]	A	AA	1.089e^-4	0.424	DOWNSTREAM tRNA:CR31143 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10372795	2R_10372795_SNP [dm3] 2R_14485290_SNP [dm6]	A	C	1.096e^-4	0.424	INTRON L	TF binding site mE1_TFBS_cad
4	981247	4_981247_SNP [dm3] 4_960621_SNP [dm6]	G	T	1.101e^-4	0.424	INTRON CR44030	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	8702332	2R_8702332_SNP [dm3] 2R_12814827_SNP [dm6]	T	C	1.104e^-4	0.424	INTERGENIC
3L	1604325	3L_1604325_SNP [dm3] 3L_1604325_SNP [dm6]	A	C	1.107e^-4	0.424	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
2R	7315395	2R_7315395_SNP [dm3] 2R_11427890_SNP [dm6]	A	G	1.110e^-4	0.424	UPSTREAM Drip INTRON Drip
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	1.111e^-4	0.424	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	18904006	2L_18904006_SNP [dm3] 2L_18904006_SNP [dm6]	A	G	1.113e^-4	0.424	INTERGENIC
2L	19922758	2L_19922758_SNP [dm3] 2L_19922758_SNP [dm6]	A	T	1.113e^-4	0.424	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	4320014	2L_4320014_SNP [dm3] 2L_4320014_SNP [dm6]	T	C	1.115e^-4	0.424	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	926860	2L_926860_SNP [dm3] 2L_926860_SNP [dm6]	A	G	1.116e^-4	0.424	INTRON CG4341
2R	8590006	2R_8590006_SNP [dm3] 2R_12702501_SNP [dm6]	C	A	1.117e^-4	0.424	INTERGENIC
2L	8359738	2L_8359738_SNP [dm3] 2L_8359738_SNP [dm6]	C	T	1.120e^-4	0.424	NON_SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18834370	X_18834370_SNP [dm3] X_18940337_SNP [dm6]	A	C	1.120e^-4	0.424	INTRON CG43759	TF binding site mE1_TFBS_HSA
3L	18147174	3L_18147174_SNP [dm3] 3L_18154074_SNP [dm6]	C	T	1.123e^-4	0.425	DOWNSTREAM CG7330 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5903508	2L_5903508_SNP [dm3] 2L_5903508_SNP [dm6]	G	A	1.125e^-4	0.425	UTR_3_PRIME CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21140622	3L_21140622_SNP [dm3] 3L_21147522_SNP [dm6]	T	C	1.128e^-4	0.425	SYNONYMOUS_CODING Ac78C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	3932716	3L_3932716_SNP [dm3] 3L_3932716_SNP [dm6]	A	G	1.137e^-4	0.427	INTRON Eip63F-1
2R	11608247	2R_11608247_SNP [dm3] 2R_15720742_SNP [dm6]	T	A	1.143e^-4	0.428	INTERGENIC
2R	18051208	2R_18051208_SNP [dm3] 2R_22163703_SNP [dm6]	T	G	1.149e^-4	0.428	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
3L	21082862	3L_21082862_SNP [dm3] 3L_21089762_SNP [dm6]	C	G	1.152e^-4	0.428	UPSTREAM CG33285 INTRON ko	regulatory region REDfly_CRMs
3L	8941189	3L_8941189_SNP [dm3] 3L_8948089_SNP [dm6]	T	C	1.152e^-4	0.428	INTRON orb2 & 1 other
X	15671618	X_15671618_INS [dm3] X_15777585_INS [dm6]	A	AATA	1.153e^-4	0.428	INTRON CG43672
2R	10725395	2R_10725395_SNP [dm3] 2R_14837890_SNP [dm6]	T	C	1.154e^-4	0.428	INTERGENIC
2L	7065340	2L_7065340_SNP [dm3] 2L_7065340_SNP [dm6]	G	A	1.157e^-4	0.428	SYNONYMOUS_CODING Nuf2 DOWNSTREAM Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	7065343	2L_7065343_SNP [dm3] 2L_7065343_SNP [dm6]	C	A	1.157e^-4	0.428	SYNONYMOUS_CODING Nuf2 DOWNSTREAM Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	1267628	3L_1267628_SNP [dm3] 3L_1267628_SNP [dm6]	C	A	1.160e^-4	0.428	INTRON CG9134
2R	7464443	2R_7464443_SNP [dm3] 2R_11576938_SNP [dm6]	G	A	1.168e^-4	0.428	DOWNSTREAM tou INTERGENIC
3R	1654822	3R_1654822_SNP [dm3] 3R_5829100_SNP [dm6]	G	T	1.169e^-4	0.428	UPSTREAM glob3 INTERGENIC	transposable element FlyBase
2L	7065843	2L_7065843_SNP [dm3] 2L_7065843_SNP [dm6]	T	G	1.171e^-4	0.428	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	12141470	2L_12141470_SNP [dm3] 2L_12141470_SNP [dm6]	A	G	1.173e^-4	0.428	INTERGENIC
X	21283847	X_21283847_SNP [dm3] X_21412820_SNP [dm6]	C	A	1.174e^-4	0.428	INTERGENIC
2L	11941514	2L_11941514_SNP [dm3] 2L_11941514_SNP [dm6]	C	T	1.176e^-4	0.428	INTERGENIC
3R	25800573	3R_25800573_SNP [dm3] 3R_29974851_SNP [dm6]	A	G	1.178e^-4	0.428	INTERGENIC
X	9986033	X_9986033_SNP [dm3] X_10092000_SNP [dm6]	A	T	1.178e^-4	0.428	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15628530	3R_15628530_SNP [dm3] 3R_19802808_SNP [dm6]	T	C	1.182e^-4	0.429	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23490473	3R_23490473_SNP [dm3] 3R_27664751_SNP [dm6]	C	T	1.188e^-4	0.43	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
3L	10745100	3L_10745100_SNP [dm3] 3L_10752000_SNP [dm6]	T	A	1.194e^-4	0.431	INTERGENIC
3L	18120031	3L_18120031_SNP [dm3] 3L_18126931_SNP [dm6]	G	A	1.198e^-4	0.432	INTERGENIC
3R	1703472	3R_1703472_SNP [dm3] 3R_5877750_SNP [dm6]	G	A	1.201e^-4	0.432	NON_SYNONYMOUS_CODING CG34113 INTRON CG34113	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6844527	3L_6844527_SNP [dm3] 3L_6851427_SNP [dm6]	G	C	1.207e^-4	0.434	INTERGENIC
X	7331771	X_7331771_SNP [dm3] X_7437738_SNP [dm6]	C	G	1.216e^-4	0.436	INTERGENIC
X	16141291	X_16141291_SNP [dm3] X_16247258_SNP [dm6]	G	A	1.220e^-4	0.436	INTERGENIC	TF binding site mE1_TFBS_sens
2R	8915792	2R_8915792_INS [dm3] 2R_13028287_INS [dm6]	C	CTGCTACC	1.221e^-4	0.436	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10612435	2R_10612435_DEL [dm3] 2R_14724930_DEL [dm6]	TACTTGACTAGTTTGTACAG...	GC	1.226e^-4	0.437	INTERGENIC
2R	10622345	2R_10622345_SNP [dm3] 2R_14734840_SNP [dm6]	T	C	1.231e^-4	0.438	INTERGENIC
2L	22106181	2L_22106181_SNP [dm3] 2L_22106181_SNP [dm6]	T	C	1.245e^-4	0.44	UPSTREAM CG15219 DOWNSTREAM CG10834 INTERGENIC
3L	3031627	3L_3031627_SNP [dm3] 3L_3031627_SNP [dm6]	T	C	1.246e^-4	0.44	INTERGENIC
X	16555322	X_16555322_SNP [dm3] X_16661289_SNP [dm6]	C	T	1.248e^-4	0.44	NON_SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
3L	22452425	3L_22452425_SNP [dm3] 3L_22459325_SNP [dm6]	A	T	1.249e^-4	0.44	UTR_3_PRIME laza	TF binding site mE1_TFBS_cad
X	7331220	X_7331220_SNP [dm3] X_7437187_SNP [dm6]	C	A	1.250e^-4	0.44	INTERGENIC
2L	8986903	2L_8986903_SNP [dm3] 2L_8986903_SNP [dm6]	G	A	1.251e^-4	0.44	INTRON rost
2R	10151161	2R_10151161_SNP [dm3] 2R_14263656_SNP [dm6]	A	T	1.256e^-4	0.441	NON_SYNONYMOUS_CODING CG8547	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1591315	3R_1591315_SNP [dm3] 3R_5765593_SNP [dm6]	C	T	1.260e^-4	0.442	INTRON CG2082
X	19666772	X_19666772_SNP [dm3] X_19772739_SNP [dm6]	C	T	1.265e^-4	0.442	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15603804	3R_15603804_SNP [dm3] 3R_19778082_SNP [dm6]	A	C	1.267e^-4	0.442	UPSTREAM CG11659 & 1 other INTERGENIC
3L	2723379	3L_2723379_SNP [dm3] 3L_2723379_SNP [dm6]	G	A	1.268e^-4	0.442	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13803207	2R_13803207_SNP [dm3] 2R_17915702_SNP [dm6]	C	A	1.271e^-4	0.442	INTRON Elk
3L	19777991	3L_19777991_DEL [dm3] 3L_19784891_DEL [dm6]	GA	G	1.272e^-4	0.442	INTRON CG42637 & 1 other
2L	10222645	2L_10222645_SNP [dm3] 2L_10222645_SNP [dm6]	A	G	1.279e^-4	0.443	UPSTREAM CG4908 DOWNSTREAM Prosalpha6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8688616	2R_8688616_SNP [dm3] 2R_12801111_SNP [dm6]	C	T	1.281e^-4	0.443	UTR_3_PRIME sca DOWNSTREAM sca
2L	2090630	2L_2090630_SNP [dm3] 2L_2090630_SNP [dm6]	A	T	1.282e^-4	0.443	INTRON dpr3
2L	9025487	2L_9025487_SNP [dm3] 2L_9025487_SNP [dm6]	T	C	1.286e^-4	0.443	UPSTREAM CG9582 DOWNSTREAM CR44352 INTRON CG9582
3R	19231414	3R_19231414_SNP [dm3] 3R_23405692_SNP [dm6]	G	A	1.288e^-4	0.443	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2R	10155986	2R_10155986_SNP [dm3] 2R_14268481_SNP [dm6]	A	T	1.290e^-4	0.443	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC	TF binding site mE1_TFBS_Trl
3R	9398496	3R_9398496_SNP [dm3] 3R_13572774_SNP [dm6]	T	A	1.292e^-4	0.443	INTERGENIC
2L	19716262	2L_19716262_SNP [dm3] 2L_19716262_SNP [dm6]	G	T	1.296e^-4	0.444	INTRON Lar
2L	7144303	2L_7144303_SNP [dm3] 2L_7144303_SNP [dm6]	A	T	1.300e^-4	0.444	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19668744	X_19668744_SNP [dm3] X_19774711_SNP [dm6]	C	T	1.305e^-4	0.445	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	8444355	3R_8444355_SNP [dm3] 3R_12618633_SNP [dm6]	G	A	1.306e^-4	0.445	DOWNSTREAM CR44942 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9063484	X_9063484_SNP [dm3] X_9169451_SNP [dm6]	A	C	1.312e^-4	0.445	INTRON mei-P26	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
4	452157	4_452157_SNP [dm3] 4_431531_SNP [dm6]	G	A	1.314e^-4	0.445	EXON CR44024
2L	3490926	2L_3490926_SNP [dm3] 2L_3490926_SNP [dm6]	A	C	1.314e^-4	0.445	UTR_5_PRIME CG15414
3L	20501853	3L_20501853_SNP [dm3] 3L_20508753_SNP [dm6]	C	T	1.326e^-4	0.446	UPSTREAM CG32425 INTRON CG32425	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19320516	2L_19320516_SNP [dm3] 2L_19320516_SNP [dm6]	T	C	1.327e^-4	0.446	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	5971595	2R_5971595_SNP [dm3] 2R_10084090_SNP [dm6]	T	C	1.328e^-4	0.446	UTR_3_PRIME egr
2R	15881842	2R_15881842_INS [dm3] 2R_19994337_INS [dm6]	A	AAGCGACACATCGAAA...	1.332e^-4	0.446	INTERGENIC
3L	484057	3L_484057_SNP [dm3] 3L_484057_SNP [dm6]	G	A	1.333e^-4	0.446	INTRON klar
X	7511536	X_7511536_SNP [dm3] X_7617503_SNP [dm6]	T	C	1.334e^-4	0.446	INTRON ct	TF binding site BDTNP1_TFBS_z
3R	9385605	3R_9385605_SNP [dm3] 3R_13559883_SNP [dm6]	T	C	1.336e^-4	0.446	INTERGENIC
2L	8221807	2L_8221807_SNP [dm3] 2L_8221807_SNP [dm6]	T	C	1.338e^-4	0.446	SYNONYMOUS_CODING Pvr
3L	18602417	3L_18602417_SNP [dm3] 3L_18609317_SNP [dm6]	T	A	1.338e^-4	0.446	UPSTREAM CG32201 INTRON CG4174 & 2 others
3R	1648001	3R_1648001_SNP [dm3] 3R_5822279_SNP [dm6]	G	T	1.342e^-4	0.446	UTR_3_PRIME CG2023 UPSTREAM Hpr1	TF binding site mE1_TFBS_Trl
3R	23483206	3R_23483206_SNP [dm3] 3R_27657484_SNP [dm6]	G	A	1.346e^-4	0.447	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
3R	6724687	3R_6724687_SNP [dm3] 3R_10898965_SNP [dm6]	A	T	1.353e^-4	0.448	UPSTREAM CR45578 INTERGENIC
2L	8034210	2L_8034210_SNP [dm3] 2L_8034210_SNP [dm6]	G	T	1.354e^-4	0.448	INTRON CG7367 & 1 other
3R	9398516	3R_9398516_SNP [dm3] 3R_13572794_SNP [dm6]	A	T	1.361e^-4	0.45	INTERGENIC
2L	9313500	2L_9313500_SNP [dm3] 2L_9313500_SNP [dm6]	G	A	1.369e^-4	0.45	INTERGENIC
2R	8702326	2R_8702326_SNP [dm3] 2R_12814821_SNP [dm6]	G	A	1.370e^-4	0.45	INTERGENIC
2R	9632088	2R_9632088_INS [dm3] 2R_13744583_INS [dm6]	T	TT	1.370e^-4	0.45	INTRON fas
3L	11840220	3L_11840220_SNP [dm3] 3L_11847120_SNP [dm6]	C	G	1.377e^-4	0.45	DOWNSTREAM CG12521 INTERGENIC
3R	11550617	3R_11550617_SNP [dm3] 3R_15724895_SNP [dm6]	T	A	1.377e^-4	0.45	INTERGENIC
X	10057975	X_10057975_SNP [dm3] X_10163942_SNP [dm6]	G	T	1.379e^-4	0.45	INTRON CR44894 & 1 other
3R	11220829	3R_11220829_SNP [dm3] 3R_15395107_SNP [dm6]	T	C	1.380e^-4	0.45	INTRON Rbp
2R	17496791	2R_17496791_SNP [dm3] 2R_21609286_SNP [dm6]	A	G	1.388e^-4	0.452	DOWNSTREAM CR43243 INTRON CG15673
2L	18630260	2L_18630260_SNP [dm3] 2L_18630260_SNP [dm6]	T	C	1.397e^-4	0.453	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
2R	12457128	2R_12457128_SNP [dm3] 2R_16569623_SNP [dm6]	A	G	1.398e^-4	0.453	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15 INTRON CG4945	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6063363	2R_6063363_SNP [dm3] 2R_10175858_SNP [dm6]	A	T	1.399e^-4	0.453	INTRON KCNQ
X	10854294	X_10854294_INS [dm3] X_10960261_INS [dm6]	T	TATAT	1.400e^-4	0.453	INTRON Myo10A
X	19710928	X_19710928_DEL [dm3] X_19816895_DEL [dm6]	ACACCACA	A	1.405e^-4	0.453	DOWNSTREAM skpC INTERGENIC
2L	16440382	2L_16440382_SNP [dm3] 2L_16440382_SNP [dm6]	T	C	1.406e^-4	0.453	INTRON CG5888
2R	9631567	2R_9631567_SNP [dm3] 2R_13744062_SNP [dm6]	T	A	1.422e^-4	0.457	INTRON fas
2L	20260736	2L_20260736_SNP [dm3] 2L_20260736_SNP [dm6]	G	A	1.423e^-4	0.457	INTERGENIC
X	4221912	X_4221912_SNP [dm3] X_4327879_SNP [dm6]	T	C	1.428e^-4	0.457	SYNONYMOUS_CODING CG12693 INTRON norpA	TF binding site BDTNP1_TFBS_twi
X	18834358	X_18834358_DEL [dm3] X_18940325_DEL [dm6]	CAATA	C	1.429e^-4	0.457	INTRON CG43759	TF binding site mE1_TFBS_HSA
2R	8426852	2R_8426852_SNP [dm3] 2R_12539347_SNP [dm6]	G	A	1.433e^-4	0.457	INTRON fra
2L	9577833	2L_9577833_SNP [dm3] 2L_9577833_SNP [dm6]	A	C	1.437e^-4	0.457	DOWNSTREAM CG31709 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1
3L	17934858	3L_17934858_SNP [dm3] 3L_17941758_SNP [dm6]	G	T	1.440e^-4	0.457	INTRON CG43174	TF binding site mE1_TFBS_HSA
X	16899067	X_16899067_SNP [dm3] X_17005034_SNP [dm6]	A	G	1.441e^-4	0.457	INTRON CG45002
3R	23560308	3R_23560308_SNP [dm3] 3R_27734586_SNP [dm6]	C	T	1.443e^-4	0.457	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22960278	3R_22960278_SNP [dm3] 3R_27134556_SNP [dm6]	C	T	1.444e^-4	0.457	INTRON CG6051
3L	15634863	3L_15634863_SNP [dm3] 3L_15641763_SNP [dm6]	T	C	1.455e^-4	0.459	INTRON comm3
2R	14941292	2R_14941292_SNP [dm3] 2R_19053787_SNP [dm6]	G	A	1.462e^-4	0.459	INTERGENIC
2R	4478145	2R_4478145_SNP [dm3] 2R_8590640_SNP [dm6]	C	T	1.467e^-4	0.459	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16764761	X_16764761_DEL [dm3] X_16870728_DEL [dm6]	ATGAAA	A	1.468e^-4	0.459	INTRON CG13003
2L	9304583	2L_9304583_SNP [dm3] 2L_9304583_SNP [dm6]	T	C	1.472e^-4	0.459	EXON CR42844
3R	1626757	3R_1626757_SNP [dm3] 3R_5801035_SNP [dm6]	C	G	1.472e^-4	0.459	INTERGENIC
X	12262403	X_12262403_SNP [dm3] X_12368370_SNP [dm6]	G	C	1.473e^-4	0.459	INTERGENIC
2R	12620596	2R_12620596_SNP [dm3] 2R_16733091_SNP [dm6]	T	A	1.475e^-4	0.459	UPSTREAM CG30463 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	21128625	3L_21128625_DEL [dm3] 3L_21135525_DEL [dm6]	GTCAGACA	G	1.476e^-4	0.459	DOWNSTREAM Ac78C INTRON CG10565	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3938437	2L_3938437_DEL [dm3] 2L_3938437_DEL [dm6]	TTGAAAACTCTATTTC...	T	1.485e^-4	0.459	INTRON fred
3R	1623937	3R_1623937_SNP [dm3] 3R_5798215_SNP [dm6]	A	T	1.489e^-4	0.459	NON_SYNONYMOUS_CODING CG10979
X	17207965	X_17207965_SNP [dm3] X_17313932_SNP [dm6]	G	T	1.489e^-4	0.459	UPSTREAM B-H2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	10747912	2R_10747912_SNP [dm3] 2R_14860407_SNP [dm6]	A	G	1.491e^-4	0.459	SYNONYMOUS_CODING U3-55K DOWNSTREAM Inr-a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11094725	2L_11094725_SNP [dm3] 2L_11094725_SNP [dm6]	A	G	1.493e^-4	0.459	DOWNSTREAM Ge-1 INTRON CG4705
2L	7895345	2L_7895345_SNP [dm3] 2L_7895345_SNP [dm6]	A	G	1.498e^-4	0.459	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19604135	X_19604135_SNP [dm3] X_19710102_SNP [dm6]	G	T	1.499e^-4	0.459	INTRON meso18E
2R	4478146	2R_4478146_SNP [dm3] 2R_8590641_SNP [dm6]	G	C	1.500e^-4	0.459	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18430560	2R_18430560_SNP [dm3] 2R_22543055_SNP [dm6]	T	C	1.500e^-4	0.459	INTRON px	TF binding site mE1_TFBS_cad
2R	10151451	2R_10151451_SNP [dm3] 2R_14263946_SNP [dm6]	A	G	1.502e^-4	0.459	SYNONYMOUS_CODING CG8547	TF binding site mE1_TFBS_cad
3L	21785908	3L_21785908_SNP [dm3] 3L_21792808_SNP [dm6]	G	C	1.504e^-4	0.459	INTERGENIC
3R	20923567	3R_20923567_SNP [dm3] 3R_25097845_SNP [dm6]	T	C	1.508e^-4	0.459	UTR_5_PRIME CG33096 & 1 other INTRON CG33096	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	15995070	X_15995070_SNP [dm3] X_16101037_SNP [dm6]	T	G	1.509e^-4	0.459	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10557891	2R_10557891_SNP [dm3] 2R_14670386_SNP [dm6]	C	T	1.511e^-4	0.459	SYNONYMOUS_CODING CG12866 UTR_3_PRIME CG12866
3R	9414756	3R_9414756_SNP [dm3] 3R_13589034_SNP [dm6]	T	G	1.512e^-4	0.459	DOWNSTREAM CG14370 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16327657	2R_16327657_SNP [dm3] 2R_20440152_SNP [dm6]	A	G	1.512e^-4	0.459	INTRON CG12484
2R	3372773	2R_3372773_SNP [dm3] 2R_7485268_SNP [dm6]	A	G	1.514e^-4	0.459	SYNONYMOUS_CODING wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15755694	X_15755694_SNP [dm3] X_15861661_SNP [dm6]	T	G	1.515e^-4	0.459	UTR_5_PRIME Gbeta13F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	504706	2L_504706_SNP [dm3] 2L_504706_SNP [dm6]	G	A	1.522e^-4	0.459	INTRON ush
3R	20822964	3R_20822964_SNP [dm3] 3R_24997242_SNP [dm6]	A	G	1.525e^-4	0.459	INTRON tnc	TF binding site mE1_TFBS_chinmo
X	21283478	X_21283478_SNP [dm3] X_21412451_SNP [dm6]	A	G	1.526e^-4	0.459	INTERGENIC
2L	7065840	2L_7065840_SNP [dm3] 2L_7065840_SNP [dm6]	A	G	1.528e^-4	0.459	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	4262450	2L_4262450_SNP [dm3] 2L_4262450_SNP [dm6]	C	A	1.529e^-4	0.459	INTERGENIC
2L	5717082	2L_5717082_INS [dm3] 2L_5717082_INS [dm6]	T	TCCGG	1.536e^-4	0.459	SPLICE_SITE_REGION CG34011 UPSTREAM CG14007 DOWNSTREAM CR44818 INTRON CG34011
3R	11550620	3R_11550620_DEL [dm3] 3R_15724898_DEL [dm6]	AAAATTTCC	A	1.538e^-4	0.459	INTERGENIC
3R	19426911	3R_19426911_DEL [dm3] 3R_23601189_DEL [dm6]	TATTTTCAGGCGCATAATGC...	C	1.538e^-4	0.459	DOWNSTREAM tRNA:CR31143 INTERGENIC
3L	8400859	3L_8400859_SNP [dm3] 3L_8407759_SNP [dm6]	G	T	1.540e^-4	0.459	SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
2L	3512183	2L_3512183_SNP [dm3] 2L_3512183_SNP [dm6]	A	C	1.541e^-4	0.459	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21977062	2L_21977062_SNP [dm3] 2L_21977062_SNP [dm6]	G	T	1.543e^-4	0.459	INTERGENIC
2R	15212327	2R_15212327_DEL [dm3] 2R_19324822_DEL [dm6]	GGCT	G	1.545e^-4	0.459	INTRON Rgk1
2R	12012548	2R_12012548_SNP [dm3] 2R_16125043_SNP [dm6]	A	G	1.547e^-4	0.459	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	22007297	2L_22007297_DEL [dm3] 2L_22007297_DEL [dm6]	ATTCATTAAAAAT...	A	1.550e^-4	0.459	INTERGENIC
3R	14348942	3R_14348942_SNP [dm3] 3R_18523220_SNP [dm6]	G	C	1.555e^-4	0.459	INTRON fru
2R	19363263	2R_19363263_SNP [dm3] 2R_23475740_SNP [dm6]	T	C	1.555e^-4	0.459	UTR_3_PRIME CG13557 UPSTREAM CR43792 INTRON CG43795
3R	1116507	3R_1116507_SNP [dm3] 3R_5290785_SNP [dm6]	G	A	1.555e^-4	0.459	INTRON mtd
X	20406477	X_20406477_SNP [dm3] X_20535450_SNP [dm6]	C	T	1.562e^-4	0.459	INTERGENIC
2L	20260743	2L_20260743_SNP [dm3] 2L_20260743_SNP [dm6]	C	T	1.570e^-4	0.459	INTERGENIC
2R	10152761	2R_10152761_SNP [dm3] 2R_14265256_SNP [dm6]	A	T	1.571e^-4	0.459	INTRON CG8547
3L	12262684	3L_12262684_DEL [dm3] 3L_12269584_DEL [dm6]	GG	G	1.572e^-4	0.459	UTR_3_PRIME CG32100 & 1 other DOWNSTREAM Pbgs
2L	3522837	2L_3522837_SNP [dm3] 2L_3522837_SNP [dm6]	C	T	1.574e^-4	0.459	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3R	1595415	3R_1595415_SNP [dm3] 3R_5769693_SNP [dm6]	T	A	1.575e^-4	0.459	INTRON CG2082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9356080	2R_9356080_SNP [dm3] 2R_13468575_SNP [dm6]	A	C	1.576e^-4	0.459	INTRON arr	TF binding site mE1_TFBS_chinmo
3L	10216893	3L_10216893_SNP [dm3] 3L_10223793_SNP [dm6]	G	T	1.577e^-4	0.459	UPSTREAM scramb1 INTRON scramb1
2L	1865695	2L_1865695_SNP [dm3] 2L_1865695_SNP [dm6]	G	A	1.579e^-4	0.459	SYNONYMOUS_CODING CG31663
3R	22265556	3R_22265556_SNP [dm3] 3R_26439834_SNP [dm6]	G	A	1.580e^-4	0.459	UPSTREAM tx INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	10672817	2R_10672817_SNP [dm3] 2R_14785312_SNP [dm6]	G	T	1.584e^-4	0.459	INTRON kn
3R	13438066	3R_13438066_SNP [dm3] 3R_17612344_SNP [dm6]	C	T	1.593e^-4	0.46	UPSTREAM Edg91 & 1 other INTERGENIC
2L	4259469	2L_4259469_SNP [dm3] 2L_4259469_SNP [dm6]	A	G	1.595e^-4	0.46	DOWNSTREAM CR44080 INTERGENIC
2R	8833701	2R_8833701_SNP [dm3] 2R_12946196_SNP [dm6]	G	C	1.596e^-4	0.46	UTR_5_PRIME Mdr49	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8702260	2R_8702260_DEL [dm3] 2R_12814755_DEL [dm6]	TTAGCT	T	1.596e^-4	0.46	INTERGENIC
2L	13003785	2L_13003785_SNP [dm3] 2L_13003785_SNP [dm6]	C	A	1.598e^-4	0.46	UPSTREAM Tor INTRON Vha68-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16539144	X_16539144_SNP [dm3] X_16645111_SNP [dm6]	T	C	1.606e^-4	0.461	INTRON mthl1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15585966	X_15585966_DEL [dm3] X_15691933_DEL [dm6]	TTACTACTATTCT...	T	1.611e^-4	0.461	DOWNSTREAM CG43132 EXON CR45523	TF binding site mE1_TFBS_Kr
2R	14523217	2R_14523217_SNP [dm3] 2R_18635712_SNP [dm6]	G	T	1.613e^-4	0.461	INTRON CG30122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13150610	3R_13150610_SNP [dm3] 3R_17324888_SNP [dm6]	A	C	1.614e^-4	0.461	INTRON beat-IIa
3L	17796368	3L_17796368_SNP [dm3] 3L_17803268_SNP [dm6]	A	G	1.614e^-4	0.461	SYNONYMOUS_CODING CG5589 UPSTREAM NUCB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9440069	2L_9440069_SNP [dm3] 2L_9440069_SNP [dm6]	T	C	1.627e^-4	0.462	NON_SYNONYMOUS_CODING CG33723 INTRON numb
3L	18744072	3L_18744072_SNP [dm3] 3L_18750972_SNP [dm6]	C	G	1.631e^-4	0.462	UTR_3_PRIME ftz-f1 DOWNSTREAM Atg3 & 1 other
2L	9202535	2L_9202535_SNP [dm3] 2L_9202535_SNP [dm6]	C	T	1.634e^-4	0.462	INTRON tai
3L	7840294	3L_7840294_SNP [dm3] 3L_7847194_SNP [dm6]	T	G	1.636e^-4	0.462	INTRON Pdp1
3R	7853526	3R_7853526_SNP [dm3] 3R_12027804_SNP [dm6]	G	A	1.637e^-4	0.462	UTR_3_PRIME CG31358 DOWNSTREAM CG31358 & 2 others
2R	9971927	2R_9971927_SNP [dm3] 2R_14084422_SNP [dm6]	A	T	1.638e^-4	0.462	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	11728644	2L_11728644_SNP [dm3] 2L_11728644_SNP [dm6]	G	A	1.639e^-4	0.462	INTERGENIC
2L	3396175	2L_3396175_SNP [dm3] 2L_3396175_SNP [dm6]	C	T	1.641e^-4	0.462	INTERGENIC
3L	11617089	3L_11617089_SNP [dm3] 3L_11623989_SNP [dm6]	T	A	1.644e^-4	0.462	UPSTREAM CG6084 DOWNSTREAM CG6083 INTRON CG6084
2R	15107203	2R_15107203_DEL [dm3] 2R_19219698_DEL [dm6]	GCATGGTGGGTCG...	G	1.644e^-4	0.462	INTRON hppy
X	11164117	X_11164117_SNP [dm3] X_11270084_SNP [dm6]	T	C	1.648e^-4	0.462	INTRON CG44422
2L	14957696	2L_14957696_SNP [dm3] 2L_14957696_SNP [dm6]	A	G	1.649e^-4	0.462	INTRON CG42313
X	15995067	X_15995067_SNP [dm3] X_16101034_SNP [dm6]	A	G	1.652e^-4	0.462	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16764806	X_16764806_SNP [dm3] X_16870773_SNP [dm6]	G	A	1.663e^-4	0.464	INTRON CG13003
2R	10622222	2R_10622222_SNP [dm3] 2R_14734717_SNP [dm6]	C	T	1.665e^-4	0.464	INTERGENIC
2R	15059588	2R_15059588_SNP [dm3] 2R_19172083_SNP [dm6]	G	A	1.668e^-4	0.464	INTRON CG10737
X	12747443	X_12747443_SNP [dm3] X_12853410_SNP [dm6]	G	A	1.681e^-4	0.464	INTRON Pde9
2R	10711040	2R_10711040_SNP [dm3] 2R_14823535_SNP [dm6]	G	A	1.681e^-4	0.464	DOWNSTREAM CR45329 INTERGENIC
4	689448	4_689448_SNP [dm3] 4_668822_SNP [dm6]	A	C	1.687e^-4	0.464	INTRON Slip1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10722998	2R_10722998_SNP [dm3] 2R_14835493_SNP [dm6]	T	C	1.689e^-4	0.464	INTERGENIC
3R	9276058	3R_9276058_SNP [dm3] 3R_13450336_SNP [dm6]	G	A	1.692e^-4	0.464	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	10043838	3L_10043838_SNP [dm3] 3L_10050738_SNP [dm6]	C	T	1.694e^-4	0.464	INTRON dpr6
X	16555329	X_16555329_SNP [dm3] X_16661296_SNP [dm6]	G	C	1.694e^-4	0.464	NON_SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
2L	5577073	2L_5577073_SNP [dm3] 2L_5577073_SNP [dm6]	G	T	1.701e^-4	0.464	INTERGENIC
2L	2557480	2L_2557480_SNP [dm3] 2L_2557480_SNP [dm6]	G	C	1.706e^-4	0.464	INTERGENIC	TF binding site mE1_TFBS_inv
2R	4478131	2R_4478131_SNP [dm3] 2R_8590626_SNP [dm6]	A	G	1.707e^-4	0.464	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	4478133	2R_4478133_SNP [dm3] 2R_8590628_SNP [dm6]	G	A	1.707e^-4	0.464	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9051694	2L_9051694_SNP [dm3] 2L_9051694_SNP [dm6]	C	G	1.712e^-4	0.464	UTR_3_PRIME CG31708
3L	2721437	3L_2721437_SNP [dm3] 3L_2721437_SNP [dm6]	C	T	1.714e^-4	0.464	NON_SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_chinmo
2R	10167507	2R_10167507_SNP [dm3] 2R_14280002_SNP [dm6]	T	C	1.714e^-4	0.464	INTRON Ih
3R	15628278	3R_15628278_SNP [dm3] 3R_19802556_SNP [dm6]	T	C	1.714e^-4	0.464	UPSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25461273	3R_25461273_DEL [dm3] 3R_29635551_DEL [dm6]	TGTGT	CTC	1.716e^-4	0.464	INTRON Dop1R2
2R	9631977	2R_9631977_SNP [dm3] 2R_13744472_SNP [dm6]	T	C	1.717e^-4	0.464	INTRON fas
2L	13004205	2L_13004205_SNP [dm3] 2L_13004205_SNP [dm6]	C	T	1.718e^-4	0.464	UPSTREAM Tor & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
2R	7460403	2R_7460403_SNP [dm3] 2R_11572898_SNP [dm6]	G	A	1.720e^-4	0.464	INTERGENIC
2L	9261448	2L_9261448_SNP [dm3] 2L_9261448_SNP [dm6]	T	A	1.720e^-4	0.464	DOWNSTREAM CR45262 INTRON Ggamma30A
2R	7301825	2R_7301825_SNP [dm3] 2R_11414320_SNP [dm6]	T	A	1.721e^-4	0.464	UPSTREAM CG7763 INTRON Drip
3L	5142503	3L_5142503_SNP [dm3] 3L_5149403_SNP [dm6]	A	C	1.722e^-4	0.464	NON_SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen
2R	19363297	2R_19363297_SNP [dm3] 2R_23475774_SNP [dm6]	A	G	1.725e^-4	0.464	UTR_3_PRIME CG13557 UPSTREAM CR43792 INTRON CG43795
2R	18696178	2R_18696178_SNP [dm3] 2R_22808673_SNP [dm6]	A	G	1.726e^-4	0.464	UTR_5_PRIME stl
2L	8327689	2L_8327689_SNP [dm3] 2L_8327689_SNP [dm6]	A	T	1.732e^-4	0.465	INTRON CG14275
3R	25403544	3R_25403544_SNP [dm3] 3R_29577822_SNP [dm6]	A	C	1.733e^-4	0.465	INTERGENIC	TF binding site mE1_TFBS_sens
2L	17963198	2L_17963198_INS [dm3] 2L_17963198_INS [dm6]	T	TTT	1.737e^-4	0.465	UPSTREAM CG5674 INTRON btv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	14513507	2R_14513507_SNP [dm3] 2R_18626002_SNP [dm6]	G	T	1.745e^-4	0.467	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
X	17233764	X_17233764_SNP [dm3] X_17339731_SNP [dm6]	G	A	1.751e^-4	0.467	INTERGENIC
X	5011120	X_5011120_SNP [dm3] X_5117087_SNP [dm6]	C	T	1.752e^-4	0.467	INTRON rg & 1 other
3R	13438386	3R_13438386_SNP [dm3] 3R_17612664_SNP [dm6]	T	A	1.754e^-4	0.467	UPSTREAM CG34281 INTERGENIC
2L	13873435	2L_13873435_DEL [dm3] 2L_13873435_DEL [dm6]	TGTAT	T	1.758e^-4	0.467	INTRON CenG1A
X	12052975	X_12052975_SNP [dm3] X_12158942_SNP [dm6]	C	A	1.758e^-4	0.467	INTRON Ten-a
2R	10789177	2R_10789177_SNP [dm3] 2R_14901672_SNP [dm6]	G	A	1.765e^-4	0.468	UTR_3_PRIME Cyp317a1 & 1 other DOWNSTREAM Cyp317a1
3R	4856287	3R_4856287_SNP [dm3] 3R_9030565_SNP [dm6]	A	T	1.766e^-4	0.468	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6045719	2L_6045719_SNP [dm3] 2L_6045719_SNP [dm6]	C	G	1.771e^-4	0.468	UPSTREAM ade2 & 1 other DOWNSTREAM slmo & 1 other INTRON ade2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6382013	3R_6382013_SNP [dm3] 3R_10556291_SNP [dm6]	C	G	1.775e^-4	0.468	INTRON hth
3R	1591276	3R_1591276_SNP [dm3] 3R_5765554_SNP [dm6]	A	G	1.781e^-4	0.468	INTRON CG2082
3L	13376252	3L_13376252_SNP [dm3] 3L_13383152_SNP [dm6]	C	G	1.783e^-4	0.468	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17230586	X_17230586_SNP [dm3] X_17336553_SNP [dm6]	T	A	1.784e^-4	0.468	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1453394	3L_1453394_MNP [dm3] 3L_1453394_MNP [dm6]	GGG	AAA	1.784e^-4	0.468	INTRON Ptp61F
2R	10274817	2R_10274817_SNP [dm3] 2R_14387312_SNP [dm6]	C	A	1.784e^-4	0.468	INTERGENIC
3L	12327908	3L_12327908_SNP [dm3] 3L_12334808_SNP [dm6]	C	T	1.785e^-4	0.468	SYNONYMOUS_CODING CG32105	TF binding site mE1_TFBS_chinmo
3L	13438763	3L_13438763_SNP [dm3] 3L_13445663_SNP [dm6]	C	T	1.792e^-4	0.469	SYNONYMOUS_CODING CG10732 INTRON CG10732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5737536	2L_5737536_SNP [dm3] 2L_5737536_SNP [dm6]	G	T	1.794e^-4	0.469	INTRON CG11030 & 1 other
3L	14689066	3L_14689066_SNP [dm3] 3L_14695966_SNP [dm6]	A	G	1.801e^-4	0.469	DOWNSTREAM CG13474 INTRON ome
X	17188235	X_17188235_SNP [dm3] X_17294202_SNP [dm6]	T	C	1.801e^-4	0.469	INTRON CG5445 & 1 other
2L	17923262	2L_17923262_SNP [dm3] 2L_17923262_SNP [dm6]	G	C	1.801e^-4	0.469	INTERGENIC
2R	13095665	2R_13095665_SNP [dm3] 2R_17208160_SNP [dm6]	A	G	1.808e^-4	0.47	INTERGENIC
X	21283266	X_21283266_SNP [dm3] X_21412239_SNP [dm6]	T	C	1.821e^-4	0.473	INTERGENIC
2R	14159839	2R_14159839_SNP [dm3] 2R_18272334_SNP [dm6]	G	T	1.824e^-4	0.473	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19427245	3R_19427245_SNP [dm3] 3R_23601523_SNP [dm6]	T	G	1.827e^-4	0.473	UPSTREAM tRNA:CR31143 DOWNSTREAM CG10184 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15628550	3R_15628550_SNP [dm3] 3R_19802828_SNP [dm6]	G	T	1.834e^-4	0.474	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3274197	2L_3274197_SNP [dm3] 2L_3274197_SNP [dm6]	C	G	1.836e^-4	0.474	INTERGENIC
3R	13438145	3R_13438145_SNP [dm3] 3R_17612423_SNP [dm6]	G	T	1.843e^-4	0.474	UPSTREAM Edg91 & 1 other INTERGENIC
2L	12141482	2L_12141482_SNP [dm3] 2L_12141482_SNP [dm6]	A	C	1.844e^-4	0.474	INTERGENIC
2R	9973944	2R_9973944_SNP [dm3] 2R_14086439_SNP [dm6]	G	T	1.845e^-4	0.474	INTRON Prosap
2R	10672683	2R_10672683_SNP [dm3] 2R_14785178_SNP [dm6]	C	A	1.857e^-4	0.475	INTRON kn
X	16887060	X_16887060_SNP [dm3] X_16993027_SNP [dm6]	C	T	1.862e^-4	0.475	INTRON CG45002
2L	4924679	2L_4924679_SNP [dm3] 2L_4924679_SNP [dm6]	C	T	1.863e^-4	0.475	INTRON hoe1
3R	8425501	3R_8425501_SNP [dm3] 3R_12599779_SNP [dm6]	A	T	1.864e^-4	0.475	INTERGENIC
2R	10532472	2R_10532472_INS [dm3] 2R_14644967_INS [dm6]	A	AAA	1.867e^-4	0.475	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9433159	3R_9433159_SNP [dm3] 3R_13607437_SNP [dm6]	T	G	1.868e^-4	0.475	UTR_3_PRIME CG9759
X	4216187	X_4216187_SNP [dm3] X_4322154_SNP [dm6]	A	T	1.869e^-4	0.475	UTR_5_PRIME mRpL33 UPSTREAM norpA DOWNSTREAM CG2982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18228774	3L_18228774_SNP [dm3] 3L_18235674_SNP [dm6]	G	A	1.875e^-4	0.475	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3271430	2L_3271430_SNP [dm3] 2L_3271430_SNP [dm6]	A	C	1.876e^-4	0.475	NON_SYNONYMOUS_CODING CG3347
2L	4050142	2L_4050142_SNP [dm3] 2L_4050142_SNP [dm6]	T	C	1.877e^-4	0.475	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1836279	3L_1836279_SNP [dm3] 3L_1836279_SNP [dm6]	C	T	1.883e^-4	0.475	INTERGENIC
3L	19356580	3L_19356580_SNP [dm3] 3L_19363480_SNP [dm6]	C	G	1.885e^-4	0.475	INTRON CG32206
2R	18319274	2R_18319274_SNP [dm3] 2R_22431769_SNP [dm6]	C	G	1.888e^-4	0.475	INTERGENIC
X	17103413	X_17103413_SNP [dm3] X_17209380_SNP [dm6]	C	T	1.888e^-4	0.475	UTR_3_PRIME CG12995 DOWNSTREAM CG32563	TF binding site BDTNP1_TFBS_sna
2L	3401630	2L_3401630_SNP [dm3] 2L_3401630_SNP [dm6]	A	T	1.893e^-4	0.475	INTERGENIC
2L	7065958	2L_7065958_SNP [dm3] 2L_7065958_SNP [dm6]	G	A	1.895e^-4	0.475	UPSTREAM Nuf2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	11107885	X_11107885_SNP [dm3] X_11213852_SNP [dm6]	C	T	1.896e^-4	0.475	INTERGENIC
3R	4856246	3R_4856246_SNP [dm3] 3R_9030524_SNP [dm6]	A	G	1.898e^-4	0.475	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7863827	3L_7863827_SNP [dm3] 3L_7870727_SNP [dm6]	G	A	1.899e^-4	0.475	INTRON CG32365
2R	15159096	2R_15159096_SNP [dm3] 2R_19271591_SNP [dm6]	G	C	1.903e^-4	0.475	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	9252592	2L_9252592_SNP [dm3] 2L_9252592_SNP [dm6]	C	G	1.904e^-4	0.475	INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12515570	2L_12515570_SNP [dm3] 2L_12515570_SNP [dm6]	A	G	1.904e^-4	0.475	INTRON bun
2R	17770758	2R_17770758_SNP [dm3] 2R_21883253_SNP [dm6]	T	A	1.912e^-4	0.475	UPSTREAM Fili & 1 other INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	17232678	X_17232678_SNP [dm3] X_17338645_SNP [dm6]	A	G	1.915e^-4	0.475	INTERGENIC
2R	11697470	2R_11697470_DEL [dm3] 2R_15809965_DEL [dm6]	ATC	A	1.924e^-4	0.475	INTRON tun & 1 other	TF binding site mE1_TFBS_HSA
3L	15634939	3L_15634939_DEL [dm3] 3L_15641839_DEL [dm6]	AGTTATTATAAGGTTCTGGC...	A	1.927e^-4	0.475	INTRON comm3
3L	18746715	3L_18746715_SNP [dm3] 3L_18753615_SNP [dm6]	C	G	1.927e^-4	0.475	INTRON ftz-f1
X	5978489	X_5978489_SNP [dm3] X_6084456_SNP [dm6]	G	A	1.931e^-4	0.475	SYNONYMOUS_CODING Mipp2 UTR_3_PRIME raptor
2R	10599699	2R_10599699_SNP [dm3] 2R_14712194_SNP [dm6]	T	G	1.931e^-4	0.475	INTRON mspo
2R	8686950	2R_8686950_SNP [dm3] 2R_12799445_SNP [dm6]	C	T	1.933e^-4	0.475	SYNONYMOUS_CODING sca UPSTREAM CR45137	TF binding site mE1_TFBS_cad
2L	16467497	2L_16467497_SNP [dm3] 2L_16467497_SNP [dm6]	T	C	1.933e^-4	0.475	UTR_3_PRIME dac	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2R	10308732	2R_10308732_SNP [dm3] 2R_14421227_SNP [dm6]	G	A	1.934e^-4	0.475	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	8701158	2R_8701158_SNP [dm3] 2R_12813653_SNP [dm6]	G	A	1.936e^-4	0.475	INTERGENIC
2L	15771177	2L_15771177_SNP [dm3] 2L_15771177_SNP [dm6]	A	G	1.936e^-4	0.475	UPSTREAM Ku80 DOWNSTREAM CG31826 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3R	24820920	3R_24820920_SNP [dm3] 3R_28995198_SNP [dm6]	A	G	1.938e^-4	0.475	INTRON wat	TF binding site mE1_TFBS_HSA
3L	577640	3L_577640_SNP [dm3] 3L_577640_SNP [dm6]	A	G	1.952e^-4	0.476	UTR_3_PRIME hipk
3L	10745010	3L_10745010_SNP [dm3] 3L_10751910_SNP [dm6]	C	T	1.952e^-4	0.476	INTERGENIC
3R	4118319	3R_4118319_SNP [dm3] 3R_8292597_SNP [dm6]	C	T	1.954e^-4	0.476	NON_SYNONYMOUS_CODING CG31463 DOWNSTREAM CG31464	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	10594655	2R_10594655_SNP [dm3] 2R_14707150_SNP [dm6]	C	T	1.954e^-4	0.476	INTRON mspo
3L	21126295	3L_21126295_SNP [dm3] 3L_21133195_SNP [dm6]	T	G	1.959e^-4	0.476	UTR_3_PRIME CG10566 DOWNSTREAM CG10565	TF binding site mE1_TFBS_cad
3R	21365568	3R_21365568_SNP [dm3] 3R_25539846_SNP [dm6]	A	T	1.961e^-4	0.476	INTRON msi
2R	4511504	2R_4511504_SNP [dm3] 2R_8623999_SNP [dm6]	T	G	1.964e^-4	0.476	UTR_3_PRIME Cirl
2R	13095687	2R_13095687_SNP [dm3] 2R_17208182_SNP [dm6]	C	G	1.967e^-4	0.476	INTERGENIC
4	451888	4_451888_DEL [dm3] 4_431262_DEL [dm6]	TTAGAAATATTTGGT...	T	1.970e^-4	0.476	EXON CR44024	transposable element FlyBase
3R	13150611	3R_13150611_SNP [dm3] 3R_17324889_SNP [dm6]	C	G	1.972e^-4	0.476	INTRON beat-IIa
2L	18281103	2L_18281103_SNP [dm3] 2L_18281103_SNP [dm6]	A	T	1.972e^-4	0.476	INTERGENIC
2R	10785535	2R_10785535_SNP [dm3] 2R_14898030_SNP [dm6]	T	A	1.977e^-4	0.476	UPSTREAM Cyp317a1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	11107843	X_11107843_SNP [dm3] X_11213810_SNP [dm6]	G	A	1.981e^-4	0.476	INTERGENIC
X	17208097	X_17208097_SNP [dm3] X_17314064_SNP [dm6]	A	T	1.982e^-4	0.476	UPSTREAM B-H2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	19231897	3R_19231897_SNP [dm3] 3R_23406175_SNP [dm6]	G	A	1.982e^-4	0.476	SYNONYMOUS_CODING Ir94e
2R	10727458	2R_10727458_SNP [dm3] 2R_14839953_SNP [dm6]	T	C	1.987e^-4	0.476	INTERGENIC
3L	14852474	3L_14852474_INS [dm3] 3L_14859374_INS [dm6]	A	ATTAAGCTTAAGACGTTCCT...	1.989e^-4	0.476	INTRON CG17839
3L	19923616	3L_19923616_SNP [dm3] 3L_19930516_SNP [dm6]	A	T	1.990e^-4	0.476	INTRON RhoGDI	TF binding site mE1_TFBS_Trl
2R	9356079	2R_9356079_SNP [dm3] 2R_13468574_SNP [dm6]	A	C	1.992e^-4	0.476	INTRON arr	TF binding site mE1_TFBS_chinmo
2R	18698226	2R_18698226_SNP [dm3] 2R_22810721_SNP [dm6]	T	C	1.995e^-4	0.476	INTRON stl
2L	22422421	2L_22422421_SNP [dm3] 2L_22529689_SNP [dm6]	G	C	1.997e^-4	0.476	INTERGENIC
3L	12136118	3L_12136118_SNP [dm3] 3L_12143018_SNP [dm6]	G	C	1.998e^-4	0.476	UTR_3_PRIME RhoGAP68F DOWNSTREAM CG5642
3R	10604453	3R_10604453_SNP [dm3] 3R_14778731_SNP [dm6]	A	T	2.004e^-4	0.476	INTRON jvl
2L	3512033	2L_3512033_SNP [dm3] 2L_3512033_SNP [dm6]	G	A	2.008e^-4	0.476	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12715400	3L_12715400_SNP [dm3] 3L_12722300_SNP [dm6]	G	A	2.009e^-4	0.476	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3300939	2L_3300939_SNP [dm3] 2L_3300939_SNP [dm6]	T	G	2.011e^-4	0.476	INTRON CG9663
3R	22480626	3R_22480626_SNP [dm3] 3R_26654904_SNP [dm6]	C	T	2.013e^-4	0.476	INTRON beat-VII	TF binding site mE1_TFBS_bab1
3R	4516401	3R_4516401_SNP [dm3] 3R_8690679_SNP [dm6]	A	T	2.015e^-4	0.476	DOWNSTREAM hb INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	13438055	3R_13438055_SNP [dm3] 3R_17612333_SNP [dm6]	G	A	2.017e^-4	0.476	UPSTREAM Edg91 & 1 other INTERGENIC
2L	9024896	2L_9024896_SNP [dm3] 2L_9024896_SNP [dm6]	T	G	2.021e^-4	0.477	SYNONYMOUS_CODING CG9582 DOWNSTREAM CR44352
X	11315357	X_11315357_SNP [dm3] X_11421324_SNP [dm6]	G	A	2.025e^-4	0.477	INTERGENIC
2L	9303748	2L_9303748_INS [dm3] 2L_9303748_INS [dm6]	G	GTCGTGGCAATG...	2.041e^-4	0.479	DOWNSTREAM CR42844 INTERGENIC
3L	7844736	3L_7844736_SNP [dm3] 3L_7851636_SNP [dm6]	G	A	2.043e^-4	0.479	INTRON Pdp1	regulatory region REDfly_CRMs
3R	9641573	3R_9641573_SNP [dm3] 3R_13815851_SNP [dm6]	G	A	2.043e^-4	0.479	UPSTREAM CR43642 DOWNSTREAM CR43641 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20163542	2R_20163542_SNP [dm3] 2R_24276019_SNP [dm6]	G	T	2.049e^-4	0.479	UTR_5_PRIME nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10540199	2R_10540199_SNP [dm3] 2R_14652694_SNP [dm6]	T	C	2.049e^-4	0.479	INTERGENIC
2L	14013752	2L_14013752_SNP [dm3] 2L_14013752_SNP [dm6]	C	A	2.049e^-4	0.479	UTR_5_PRIME bgm INTRON bgm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4340074	3R_4340074_SNP [dm3] 3R_8514352_SNP [dm6]	T	C	2.061e^-4	0.481	INTERGENIC
4	1113495	4_1113495_SNP [dm3] 4_1092869_SNP [dm6]	T	C	2.065e^-4	0.481	INTRON sv
3R	24776656	3R_24776656_SNP [dm3] 3R_28950934_SNP [dm6]	G	A	2.066e^-4	0.481	INTRON CG14521
2L	3395959	2L_3395959_SNP [dm3] 2L_3395959_SNP [dm6]	G	A	2.071e^-4	0.481	INTERGENIC
2R	14010795	2R_14010795_SNP [dm3] 2R_18123290_SNP [dm6]	G	A	2.082e^-4	0.481	INTRON stau	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3L	12692994	3L_12692994_SNP [dm3] 3L_12699894_SNP [dm6]	T	C	2.091e^-4	0.481	INTRON mirr	TF binding site BDTNP1_TFBS_twi
3L	16420367	3L_16420367_SNP [dm3] 3L_16427267_SNP [dm6]	A	G	2.092e^-4	0.481	INTRON CG33158 & 1 other
2L	3512063	2L_3512063_SNP [dm3] 2L_3512063_SNP [dm6]	C	G	2.093e^-4	0.481	SYNONYMOUS_CODING CG33123	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9198590	2L_9198590_SNP [dm3] 2L_9198590_SNP [dm6]	A	G	2.094e^-4	0.481	INTRON tai
2R	10666534	2R_10666534_SNP [dm3] 2R_14779029_SNP [dm6]	G	A	2.096e^-4	0.481	INTRON kn
2R	15171632	2R_15171632_SNP [dm3] 2R_19284127_SNP [dm6]	C	A	2.097e^-4	0.481	UPSTREAM CG11906 DOWNSTREAM CG10476 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
X	16470015	X_16470015_SNP [dm3] X_16575982_SNP [dm6]	G	C	2.098e^-4	0.481	INTRON CanA-14F
2R	10700192	2R_10700192_SNP [dm3] 2R_14812687_SNP [dm6]	G	C	2.099e^-4	0.481	INTERGENIC	regulatory region REDfly_CRMs
3L	8582549	3L_8582549_SNP [dm3] 3L_8589449_SNP [dm6]	C	T	2.099e^-4	0.481	UPSTREAM CG43078 INTRON CG43078
2R	6858568	2R_6858568_DEL [dm3] 2R_10971063_DEL [dm6]	GAAATAG	G	2.101e^-4	0.481	INTERGENIC
3R	5678520	3R_5678520_INS [dm3] 3R_9852798_INS [dm6]	C	ATAAG	2.102e^-4	0.481	INTRON Teh1
3L	10745122	3L_10745122_SNP [dm3] 3L_10752022_SNP [dm6]	T	A	2.102e^-4	0.481	INTERGENIC
2R	14769566	2R_14769566_SNP [dm3] 2R_18882061_SNP [dm6]	T	A	2.108e^-4	0.482	INTRON sano
X	17239922	X_17239922_SNP [dm3] X_17345889_SNP [dm6]	C	T	2.112e^-4	0.482	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9631997	2R_9631997_SNP [dm3] 2R_13744492_SNP [dm6]	T	G	2.114e^-4	0.482	INTRON fas
2R	9348371	2R_9348371_SNP [dm3] 2R_13460866_SNP [dm6]	A	G	2.114e^-4	0.482	INTRON arr
2R	10161652	2R_10161652_SNP [dm3] 2R_14274147_SNP [dm6]	C	T	2.120e^-4	0.483	SYNONYMOUS_CODING conv
3R	25482621	3R_25482621_SNP [dm3] 3R_29656899_SNP [dm6]	T	C	2.123e^-4	0.483	INTRON Dop1R2
X	21283691	X_21283691_SNP [dm3] X_21412664_SNP [dm6]	A	G	2.128e^-4	0.483	INTERGENIC
2L	6001191	2L_6001191_SNP [dm3] 2L_6001191_SNP [dm6]	C	T	2.134e^-4	0.484	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12485864	2R_12485864_SNP [dm3] 2R_16598359_SNP [dm6]	C	T	2.135e^-4	0.484	UPSTREAM CG5089 INTRON CG8303
3R	2547460	3R_2547460_SNP [dm3] 3R_6721738_SNP [dm6]	T	C	2.145e^-4	0.485	INTRON pb	regulatory region REDfly_CRMs
2L	11969832	2L_11969832_SNP [dm3] 2L_11969832_SNP [dm6]	T	A	2.150e^-4	0.486	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6756442	2L_6756442_SNP [dm3] 2L_6756442_SNP [dm6]	A	G	2.158e^-4	0.486	DOWNSTREAM CG11221 INTERGENIC
2R	17051707	2R_17051707_SNP [dm3] 2R_21164202_SNP [dm6]	C	T	2.161e^-4	0.486	SYNONYMOUS_CODING CG4266 UTR_3_PRIME CG4266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3267780	2L_3267780_SNP [dm3] 2L_3267780_SNP [dm6]	C	A	2.162e^-4	0.486	UPSTREAM CR44484 INTERGENIC
2R	9211343	2R_9211343_SNP [dm3] 2R_13323838_SNP [dm6]	G	A	2.162e^-4	0.486	INTERGENIC
2R	12665612	2R_12665612_SNP [dm3] 2R_16778107_SNP [dm6]	T	A	2.165e^-4	0.486	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16322569	2R_16322569_SNP [dm3] 2R_20435064_SNP [dm6]	A	C	2.169e^-4	0.487	INTRON CG12484
3L	5142034	3L_5142034_SNP [dm3] 3L_5148934_SNP [dm6]	G	C	2.173e^-4	0.487	SYNONYMOUS_CODING Aats-ala-m DOWNSTREAM Gen	TF binding site mE1_TFBS_chinmo
3R	13773994	3R_13773994_SNP [dm3] 3R_17948272_SNP [dm6]	T	A	2.176e^-4	0.487	INTRON cpo
2R	18700210	2R_18700210_SNP [dm3] 2R_22812705_SNP [dm6]	C	A	2.191e^-4	0.49	SPLICE_SITE_REGION stl INTRON stl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14053154	2R_14053154_SNP [dm3] 2R_18165649_SNP [dm6]	A	G	2.201e^-4	0.49	SYNONYMOUS_CODING Nup75 DOWNSTREAM CG10915
X	2417713	X_2417713_SNP [dm3] X_2523680_SNP [dm6]	A	G	2.206e^-4	0.49	SYNONYMOUS_CODING trol
3L	9356600	3L_9356600_SNP [dm3] 3L_9363500_SNP [dm6]	A	G	2.207e^-4	0.49	SYNONYMOUS_CODING Klp67A UPSTREAM CG4447 DOWNSTREAM CG34456
3R	1689851	3R_1689851_SNP [dm3] 3R_5864129_SNP [dm6]	G	A	2.209e^-4	0.49	UTR_3_PRIME CG34113
2R	18040880	2R_18040880_SNP [dm3] 2R_22153375_SNP [dm6]	G	T	2.209e^-4	0.49	INTRON a	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	5654761	3R_5654761_SNP [dm3] 3R_9829039_SNP [dm6]	T	C	2.212e^-4	0.49	INTRON Teh1
X	16926422	X_16926422_SNP [dm3] X_17032389_SNP [dm6]	G	T	2.213e^-4	0.49	INTRON CG45002
4	468459	4_468459_SNP [dm3] 4_447833_SNP [dm6]	C	A	2.215e^-4	0.49	INTRON CaMKI
2R	10597880	2R_10597880_SNP [dm3] 2R_14710375_SNP [dm6]	G	A	2.215e^-4	0.49	INTRON mspo
X	6091443	X_6091443_SNP [dm3] X_6197410_SNP [dm6]	T	A	2.220e^-4	0.49	NON_SYNONYMOUS_CODING CG32751 UPSTREAM CG32750
2R	13141080	2R_13141080_SNP [dm3] 2R_17253575_SNP [dm6]	A	G	2.225e^-4	0.491	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi
2R	7976864	2R_7976864_INS [dm3] 2R_12089359_INS [dm6]	A	ACGTG	2.238e^-4	0.492	UTR_3_PRIME jeb
2R	14715992	2R_14715992_SNP [dm3] 2R_18828487_SNP [dm6]	T	C	2.240e^-4	0.492	INTRON CG15097
3L	5174186	3L_5174186_SNP [dm3] 3L_5181086_SNP [dm6]	A	T	2.245e^-4	0.492	INTRON shep
2L	3523039	2L_3523039_SNP [dm3] 2L_3523039_SNP [dm6]	T	C	2.245e^-4	0.492	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2L	16439820	2L_16439820_SNP [dm3] 2L_16439820_SNP [dm6]	T	A	2.250e^-4	0.492	INTRON CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	10332521	2R_10332521_SNP [dm3] 2R_14445016_SNP [dm6]	A	C	2.251e^-4	0.492	INTRON Oaz
3L	12909022	3L_12909022_SNP [dm3] 3L_12915922_SNP [dm6]	A	G	2.251e^-4	0.492	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10216813	3L_10216813_DEL [dm3] 3L_10223713_DEL [dm6]	GTAAGCTCAG	G	2.257e^-4	0.492	UPSTREAM scramb1 INTRON scramb1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10168297	3L_10168297_SNP [dm3] 3L_10175197_SNP [dm6]	T	A	2.257e^-4	0.492	INTRON dpr10
X	17232758	X_17232758_SNP [dm3] X_17338725_SNP [dm6]	G	T	2.257e^-4	0.492	INTERGENIC
3L	1454388	3L_1454388_SNP [dm3] 3L_1454388_SNP [dm6]	G	C	2.268e^-4	0.493	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3L	13442094	3L_13442094_SNP [dm3] 3L_13448994_SNP [dm6]	G	A	2.270e^-4	0.493	SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133
3L	10168325	3L_10168325_SNP [dm3] 3L_10175225_SNP [dm6]	C	T	2.270e^-4	0.493	INTRON dpr10
2R	17770725	2R_17770725_SNP [dm3] 2R_21883220_SNP [dm6]	T	A	2.275e^-4	0.493	UPSTREAM Fili & 1 other INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	13657166	2R_13657166_SNP [dm3] 2R_17769661_SNP [dm6]	G	C	2.281e^-4	0.493	SYNONYMOUS_CODING CG18635 DOWNSTREAM CG6362	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	9982514	3R_9982514_SNP [dm3] 3R_14156792_SNP [dm6]	C	T	2.287e^-4	0.493	NON_SYNONYMOUS_CODING CG31533 DOWNSTREAM CG31327	TF binding site mE1_TFBS_sens
2L	3263773	2L_3263773_SNP [dm3] 2L_3263773_SNP [dm6]	C	G	2.288e^-4	0.493	DOWNSTREAM CR45706 INTERGENIC
3L	14203477	3L_14203477_SNP [dm3] 3L_14210377_SNP [dm6]	T	A	2.290e^-4	0.493	INTRON nuf
2L	19912392	2L_19912392_DEL [dm3] 2L_19912392_DEL [dm6]	AA	A	2.290e^-4	0.493	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
2L	19907508	2L_19907508_SNP [dm3] 2L_19907508_SNP [dm6]	A	C	2.297e^-4	0.493	INTRON sick
3R	20067895	3R_20067895_SNP [dm3] 3R_24242173_SNP [dm6]	T	C	2.301e^-4	0.493	SYNONYMOUS_CODING mask	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13438042	3R_13438042_SNP [dm3] 3R_17612320_SNP [dm6]	T	C	2.301e^-4	0.493	UPSTREAM Edg91 & 1 other INTERGENIC
3L	11480162	3L_11480162_SNP [dm3] 3L_11487062_SNP [dm6]	T	C	2.303e^-4	0.493	UPSTREAM chrb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Trl
3L	15678690	3L_15678690_SNP [dm3] 3L_15685590_SNP [dm6]	A	T	2.303e^-4	0.493	DOWNSTREAM CG34452 INTRON pgant8	TF binding site mE1_TFBS_inv
2L	927586	2L_927586_SNP [dm3] 2L_927586_SNP [dm6]	C	A	2.304e^-4	0.493	INTRON CG4341
2R	17747404	2R_17747404_SNP [dm3] 2R_21859899_SNP [dm6]	G	A	2.306e^-4	0.493	UPSTREAM CG9294 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7808270	X_7808270_SNP [dm3] X_7914237_SNP [dm6]	A	T	2.311e^-4	0.493	INTRON snz
2R	10154875	2R_10154875_SNP [dm3] 2R_14267370_SNP [dm6]	C	A	2.311e^-4	0.493	START_GAINED CG8547 UTR_5_PRIME CG8547 INTRON CG8547
2R	8385102	2R_8385102_SNP [dm3] 2R_12497597_SNP [dm6]	C	T	2.313e^-4	0.493	INTRON fdl & 1 other	TF binding site mE1_TFBS_inv
2L	3830340	2L_3830340_SNP [dm3] 2L_3830340_SNP [dm6]	G	C	2.315e^-4	0.493	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	12135397	3L_12135397_SNP [dm3] 3L_12142297_SNP [dm6]	C	T	2.324e^-4	0.495	SYNONYMOUS_CODING RhoGAP68F
2R	8730973	2R_8730973_SNP [dm3] 2R_12843468_SNP [dm6]	C	A	2.331e^-4	0.496	NON_SYNONYMOUS_CODING Or49b UPSTREAM Cyp9h1	TF binding site BDTNP1_TFBS_twi
2L	6525495	2L_6525495_SNP [dm3] 2L_6525495_SNP [dm6]	C	A	2.354e^-4	0.499	SYNONYMOUS_CODING CG31637
2R	11613733	2R_11613733_SNP [dm3] 2R_15726228_SNP [dm6]	G	C	2.356e^-4	0.499	INTERGENIC
2L	10001588	2L_10001588_SNP [dm3] 2L_10001588_SNP [dm6]	C	G	2.356e^-4	0.499	INTRON CG31875 & 1 other
2L	3522815	2L_3522815_SNP [dm3] 2L_3522815_SNP [dm6]	T	C	2.369e^-4	0.499	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
X	13481441	X_13481441_SNP [dm3] X_13587408_SNP [dm6]	C	A	2.373e^-4	0.499	INTRON Tango13
2R	13095940	2R_13095940_SNP [dm3] 2R_17208435_SNP [dm6]	G	A	2.374e^-4	0.499	INTERGENIC
X	6090955	X_6090955_SNP [dm3] X_6196922_SNP [dm6]	C	T	2.375e^-4	0.499	UPSTREAM CG32750 INTRON CG32751
2L	3120448	2L_3120448_SNP [dm3] 2L_3120448_SNP [dm6]	T	G	2.375e^-4	0.499	INTRON toc
2R	17748082	2R_17748082_SNP [dm3] 2R_21860577_SNP [dm6]	A	C	2.376e^-4	0.499	UPSTREAM CG9294 INTERGENIC
X	7998832	X_7998832_SNP [dm3] X_8104799_SNP [dm6]	T	C	2.378e^-4	0.499	SYNONYMOUS_CODING Gclc
X	2418637	X_2418637_SNP [dm3] X_2524604_SNP [dm6]	G	A	2.378e^-4	0.499	INTRON trol	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	16804865	3R_16804865_SNP [dm3] 3R_20979143_SNP [dm6]	A	T	2.379e^-4	0.499	INTRON Calx
X	16545100	X_16545100_SNP [dm3] X_16651067_SNP [dm6]	T	A	2.379e^-4	0.499	UPSTREAM CG32573 & 1 other DOWNSTREAM mthl1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	7840328	3L_7840328_SNP [dm3] 3L_7847228_SNP [dm6]	T	C	2.395e^-4	0.5	INTRON Pdp1
2R	6063424	2R_6063424_DEL [dm3] 2R_10175919_DEL [dm6]	AGAT	A	2.400e^-4	0.5	INTRON KCNQ
2R	18405845	2R_18405845_SNP [dm3] 2R_22518340_SNP [dm6]	T	G	2.405e^-4	0.5	INTRON px	TF binding site BDTNP1_TFBS_dl
3R	23810126	3R_23810126_SNP [dm3] 3R_27984404_SNP [dm6]	C	T	2.407e^-4	0.5	INTRON betaTub97EF
X	18212222	X_18212222_SNP [dm3] X_18318189_SNP [dm6]	A	T	2.408e^-4	0.5	INTRON CG6023
2R	16027278	2R_16027278_SNP [dm3] 2R_20139773_SNP [dm6]	C	G	2.409e^-4	0.5	INTERGENIC
X	7190669	X_7190669_SNP [dm3] X_7296636_SNP [dm6]	T	G	2.410e^-4	0.5	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6193052	2L_6193052_INS [dm3] 2L_6193052_INS [dm6]	T	TT	2.415e^-4	0.5	INTRON CG34380
2R	10672498	2R_10672498_SNP [dm3] 2R_14784993_SNP [dm6]	C	G	2.415e^-4	0.5	INTRON kn
X	9609882	X_9609882_SNP [dm3] X_9715849_SNP [dm6]	T	C	2.416e^-4	0.5	INTERGENIC
4	359830	4_359830_SNP [dm3] 4_339204_SNP [dm6]	T	C	2.420e^-4	0.5	INTRON PMCA	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10153763	2R_10153763_SNP [dm3] 2R_14266258_SNP [dm6]	A	G	2.420e^-4	0.5	INTRON CG8547
3L	1406666	3L_1406666_SNP [dm3] 3L_1406666_SNP [dm6]	G	A	2.424e^-4	0.501	INTRON Ptp61F
2L	12141420	2L_12141420_SNP [dm3] 2L_12141420_SNP [dm6]	T	C	2.427e^-4	0.501	INTERGENIC
2L	4846623	2L_4846623_SNP [dm3] 2L_4846623_SNP [dm6]	T	A	2.430e^-4	0.501	UPSTREAM mxt INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12142444	2L_12142444_INS [dm3] 2L_12142444_INS [dm6]	C	ATTTATATATATATAAATTA...	2.434e^-4	0.501	UPSTREAM CG31760 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10680097	2R_10680097_SNP [dm3] 2R_14792592_SNP [dm6]	A	G	2.443e^-4	0.502	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6372312	3L_6372312_SNP [dm3] 3L_6379212_SNP [dm6]	A	C	2.444e^-4	0.502	INTERGENIC
2R	7508539	2R_7508539_SNP [dm3] 2R_11621034_SNP [dm6]	C	T	2.446e^-4	0.502	SYNONYMOUS_CODING CG9005	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11314735	2L_11314735_SNP [dm3] 2L_11314735_SNP [dm6]	T	C	2.453e^-4	0.502	INTERGENIC
2R	18650348	2R_18650348_SNP [dm3] 2R_22762843_SNP [dm6]	A	G	2.456e^-4	0.502	UPSTREAM CG13527 INTRON CG42260
2L	19913184	2L_19913184_SNP [dm3] 2L_19913184_SNP [dm6]	A	G	2.456e^-4	0.502	SYNONYMOUS_CODING Victoria UPSTREAM TotF INTRON sick
3L	16070000	3L_16070000_SNP [dm3] 3L_16076900_SNP [dm6]	T	G	2.457e^-4	0.502	INTRON Mbs
2R	10161527	2R_10161527_SNP [dm3] 2R_14274022_SNP [dm6]	T	C	2.458e^-4	0.502	NON_SYNONYMOUS_CODING conv
2L	1413068	2L_1413068_SNP [dm3] 2L_1413068_SNP [dm6]	G	A	2.468e^-4	0.503	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22830407	3R_22830407_SNP [dm3] 3R_27004685_SNP [dm6]	G	A	2.473e^-4	0.503	SYNONYMOUS_CODING CG6296 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18467910	2R_18467910_SNP [dm3] 2R_22580405_SNP [dm6]	C	T	2.474e^-4	0.503	INTRON dnr1
3L	16069986	3L_16069986_SNP [dm3] 3L_16076886_SNP [dm6]	C	T	2.488e^-4	0.504	INTRON Mbs
2L	3656356	2L_3656356_SNP [dm3] 2L_3656356_SNP [dm6]	C	G	2.489e^-4	0.504	INTRON for	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2086735	2L_2086735_SNP [dm3] 2L_2086735_SNP [dm6]	A	T	2.497e^-4	0.504	INTRON dpr3
3R	9400403	3R_9400403_SNP [dm3] 3R_13574681_SNP [dm6]	T	A	2.497e^-4	0.504	UPSTREAM CR43848 INTERGENIC
3L	2729628	3L_2729628_INS [dm3] 3L_2729628_INS [dm6]	A	ATTCA	2.502e^-4	0.504	INTRON Mrtf
X	12747546	X_12747546_SNP [dm3] X_12853513_SNP [dm6]	T	C	2.502e^-4	0.504	INTRON Pde9
X	12813076	X_12813076_SNP [dm3] X_12919043_SNP [dm6]	C	G	2.503e^-4	0.504	UTR_5_PRIME fne
2L	17066954	2L_17066954_SNP [dm3] 2L_17066954_SNP [dm6]	T	A	2.506e^-4	0.504	INTERGENIC
3R	10497055	3R_10497055_SNP [dm3] 3R_14671333_SNP [dm6]	T	G	2.508e^-4	0.504	INTRON Meltrin	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3796513	2R_3796513_SNP [dm3] 2R_7909008_SNP [dm6]	G	T	2.510e^-4	0.504	INTRON CG30377	TF binding site mE1_TFBS_cad
2L	5871665	2L_5871665_SNP [dm3] 2L_5871665_SNP [dm6]	G	C	2.511e^-4	0.504	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	1615842	3R_1615842_SNP [dm3] 3R_5790120_SNP [dm6]	G	A	2.511e^-4	0.504	SYNONYMOUS_CODING Rpn5 UPSTREAM CG2051	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_sens
3L	18184923	3L_18184923_DEL [dm3] 3L_18191823_DEL [dm6]	CT	C	2.513e^-4	0.504	INTERGENIC
2R	9211344	2R_9211344_SNP [dm3] 2R_13323839_SNP [dm6]	T	G	2.526e^-4	0.506	INTERGENIC
2R	10725372	2R_10725372_INS [dm3] 2R_14837867_INS [dm6]	G	AA	2.531e^-4	0.506	INTERGENIC
3L	17999169	3L_17999169_SNP [dm3] 3L_18006069_SNP [dm6]	T	A	2.537e^-4	0.506	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13033739	2R_13033739_SNP [dm3] 2R_17146234_SNP [dm6]	G	A	2.539e^-4	0.506	DOWNSTREAM tRNA:CR30235 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18212307	X_18212307_SNP [dm3] X_18318274_SNP [dm6]	A	T	2.540e^-4	0.506	INTRON CG6023
X	17673047	X_17673047_SNP [dm3] X_17779014_SNP [dm6]	T	G	2.548e^-4	0.506	DOWNSTREAM unc-4 INTERGENIC
2L	2479792	2L_2479792_SNP [dm3] 2L_2479792_SNP [dm6]	G	A	2.552e^-4	0.506	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	20164145	2R_20164145_SNP [dm3] 2R_24276622_SNP [dm6]	C	T	2.552e^-4	0.506	INTRON nvy	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10548469	2R_10548469_SNP [dm3] 2R_14660964_SNP [dm6]	G	A	2.553e^-4	0.506	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18700092	2R_18700092_SNP [dm3] 2R_22812587_SNP [dm6]	C	A	2.556e^-4	0.506	INTRON stl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	581740	2L_581740_SNP [dm3] 2L_581740_SNP [dm6]	C	T	2.557e^-4	0.506	INTERGENIC
X	12820227	X_12820227_SNP [dm3] X_12926194_SNP [dm6]	T	G	2.561e^-4	0.506	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9253428	2L_9253428_INS [dm3] 2L_9253428_INS [dm6]	G	CACGACATAAAAACAAAAA...	2.565e^-4	0.506	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	16062137	3L_16062137_INS [dm3] 3L_16069037_INS [dm6]	T	TAT	2.567e^-4	0.506	INTRON Mbs	TF binding site mE1_TFBS_cad
2L	11710276	2L_11710276_SNP [dm3] 2L_11710276_SNP [dm6]	G	T	2.567e^-4	0.506	INTERGENIC
3R	25173065	3R_25173065_SNP [dm3] 3R_29347343_SNP [dm6]	C	G	2.569e^-4	0.506	INTERGENIC
X	5601796	X_5601796_SNP [dm3] X_5707763_SNP [dm6]	T	C	2.574e^-4	0.506	SYNONYMOUS_CODING CG4096 UTR_3_PRIME CG4096 DOWNSTREAM CG33080	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25964527	3R_25964527_SNP [dm3] 3R_30138805_SNP [dm6]	C	T	2.581e^-4	0.506	UTR_5_PRIME AdoR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1639245	3R_1639245_SNP [dm3] 3R_5813523_SNP [dm6]	T	G	2.582e^-4	0.506	UPSTREAM CG42675 DOWNSTREAM CG11000 INTERGENIC
X	17232916	X_17232916_SNP [dm3] X_17338883_SNP [dm6]	T	C	2.584e^-4	0.506	INTERGENIC
X	17502885	X_17502885_INS [dm3] X_17608852_INS [dm6]	T	TGGGGT	2.584e^-4	0.506	INTERGENIC
2L	1218626	2L_1218626_SNP [dm3] 2L_1218626_SNP [dm6]	A	G	2.585e^-4	0.506	UPSTREAM CR43263 & 1 other INTERGENIC
2R	16620155	2R_16620155_DEL [dm3] 2R_20732650_DEL [dm6]	CC	C	2.588e^-4	0.506	INTRON dpr
2R	16620159	2R_16620159_SNP [dm3] 2R_20732654_SNP [dm6]	T	C	2.588e^-4	0.506	INTRON dpr
2L	9253430	2L_9253430_SNP [dm3] 2L_9253430_SNP [dm6]	T	A	2.599e^-4	0.507	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	8631536	2R_8631536_DEL [dm3] 2R_12744031_DEL [dm6]	TGCGTAAGTTTAGTTTCGT...	T	2.601e^-4	0.507	INTRON CG42663	TF binding site mE1_TFBS_Trl
2R	18699204	2R_18699204_SNP [dm3] 2R_22811699_SNP [dm6]	A	T	2.603e^-4	0.507	INTRON stl
3L	3934566	3L_3934566_SNP [dm3] 3L_3934566_SNP [dm6]	T	A	2.607e^-4	0.507	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
2R	7497412	2R_7497412_SNP [dm3] 2R_11609907_SNP [dm6]	A	G	2.609e^-4	0.507	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18285191	2L_18285191_SNP [dm3] 2L_18285191_SNP [dm6]	G	A	2.610e^-4	0.507	SYNONYMOUS_CODING CG31787	TF binding site mE1_TFBS_inv
3R	13773939	3R_13773939_SNP [dm3] 3R_17948217_SNP [dm6]	T	C	2.627e^-4	0.509	INTRON cpo
2L	22037851	2L_22037851_SNP [dm3] 2L_22037851_SNP [dm6]	C	A	2.629e^-4	0.509	UPSTREAM CG41434 INTERGENIC
2R	16149927	2R_16149927_SNP [dm3] 2R_20262422_SNP [dm6]	T	C	2.631e^-4	0.509	SYNONYMOUS_CODING PCNA DOWNSTREAM Hsl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22018258	3R_22018258_SNP [dm3] 3R_26192536_SNP [dm6]	T	C	2.637e^-4	0.509	INTERGENIC
2L	3271429	2L_3271429_SNP [dm3] 2L_3271429_SNP [dm6]	G	T	2.638e^-4	0.509	STOP_GAINED CG3347
2L	3669168	2L_3669168_SNP [dm3] 2L_3669168_SNP [dm6]	G	C	2.639e^-4	0.509	UPSTREAM Sfp24Ba & 1 other DOWNSTREAM Sfp24Bb & 1 other INTRON CG34340
3L	18278275	3L_18278275_SNP [dm3] 3L_18285175_SNP [dm6]	A	C	2.642e^-4	0.509	INTERGENIC
2R	13094471	2R_13094471_SNP [dm3] 2R_17206966_SNP [dm6]	G	T	2.647e^-4	0.509	INTERGENIC
2L	8362702	2L_8362702_SNP [dm3] 2L_8362702_SNP [dm6]	G	A	2.648e^-4	0.509	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	4223161	X_4223161_SNP [dm3] X_4329128_SNP [dm6]	T	C	2.650e^-4	0.509	INTRON norpA & 1 other
3R	1593076	3R_1593076_SNP [dm3] 3R_5767354_SNP [dm6]	C	A	2.652e^-4	0.509	INTRON CG2082	TF binding site mE1_TFBS_cad
2L	2593870	2L_2593870_SNP [dm3] 2L_2593870_SNP [dm6]	A	G	2.655e^-4	0.509	INTERGENIC
2R	8385098	2R_8385098_SNP [dm3] 2R_12497593_SNP [dm6]	A	G	2.657e^-4	0.509	INTRON fdl & 1 other	TF binding site mE1_TFBS_inv
2R	10594763	2R_10594763_SNP [dm3] 2R_14707258_SNP [dm6]	C	A	2.657e^-4	0.509	INTRON mspo
3R	25219905	3R_25219905_SNP [dm3] 3R_29394183_SNP [dm6]	T	G	2.667e^-4	0.509	INTRON Ptp99A
X	5694025	X_5694025_SNP [dm3] X_5799992_SNP [dm6]	G	T	2.668e^-4	0.509	INTERGENIC
3R	1595803	3R_1595803_SNP [dm3] 3R_5770081_SNP [dm6]	C	A	2.671e^-4	0.509	INTRON CG2082	TF binding site mE1_TFBS_inv
2R	10443219	2R_10443219_SNP [dm3] 2R_14555714_SNP [dm6]	T	G	2.673e^-4	0.509	INTRON ttv
3R	15628255	3R_15628255_DEL [dm3] 3R_19802533_DEL [dm6]	TT	T	2.674e^-4	0.509	UPSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15833384	3R_15833384_SNP [dm3] 3R_20007662_SNP [dm6]	T	C	2.675e^-4	0.509	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
4	625799	4_625799_SNP [dm3] 4_605173_SNP [dm6]	G	A	2.681e^-4	0.509	SYNONYMOUS_CODING onecut	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	10157335	2R_10157335_SNP [dm3] 2R_14269830_SNP [dm6]	A	G	2.687e^-4	0.509	SYNONYMOUS_CODING SelD UPSTREAM conv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10157341	2R_10157341_SNP [dm3] 2R_14269836_SNP [dm6]	A	G	2.687e^-4	0.509	SYNONYMOUS_CODING SelD UPSTREAM conv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	22480585	3R_22480585_SNP [dm3] 3R_26654863_SNP [dm6]	G	T	2.687e^-4	0.509	INTRON beat-VII	TF binding site mE1_TFBS_bab1
2L	13004007	2L_13004007_SNP [dm3] 2L_13004007_SNP [dm6]	C	A	2.688e^-4	0.509	UTR_5_PRIME Vha68-1 UPSTREAM Tor INTRON Vha68-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h
3R	10571801	3R_10571801_SNP [dm3] 3R_14746079_SNP [dm6]	A	C	2.693e^-4	0.509	UTR_3_PRIME smp-30 DOWNSTREAM smp-30 INTRON jvl
2L	13004428	2L_13004428_SNP [dm3] 2L_13004428_SNP [dm6]	T	A	2.694e^-4	0.509	UPSTREAM Tor & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	7982903	2R_7982903_SNP [dm3] 2R_12095398_SNP [dm6]	T	C	2.699e^-4	0.51	INTRON jeb
2L	8390546	2L_8390546_SNP [dm3] 2L_8390546_SNP [dm6]	T	C	2.702e^-4	0.51	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13755195	2R_13755195_SNP [dm3] 2R_17867690_SNP [dm6]	T	A	2.715e^-4	0.511	INTRON Mapmodulin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9259372	2L_9259372_SNP [dm3] 2L_9259372_SNP [dm6]	C	A	2.718e^-4	0.511	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
2R	3819864	2R_3819864_SNP [dm3] 2R_7932359_SNP [dm6]	A	C	2.722e^-4	0.511	UTR_5_PRIME rnh1 UPSTREAM drosha	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	927636	2L_927636_SNP [dm3] 2L_927636_SNP [dm6]	T	A	2.723e^-4	0.511	INTRON CG4341
2R	7455292	2R_7455292_SNP [dm3] 2R_11567787_SNP [dm6]	A	T	2.724e^-4	0.511	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	17743429	3R_17743429_SNP [dm3] 3R_21917707_SNP [dm6]	G	A	2.724e^-4	0.511	INTERGENIC

By genomic position
Variant impact
Gene name

Delta_Death.at.48h Experience 2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results