DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.353e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.7519	0.0564
In_3R_Mo	5.8931	0.0525

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1696 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	13014946	3L_13014946_INS [dm3] 3L_13021846_INS [dm6]	T	AAAGG	1.311e^-7	0.19	UPSTREAM AdenoK INTRON AdenoK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9551413	2L_9551413_SNP [dm3] 2L_9551413_SNP [dm6]	G	A	2.030e^-7	0.19	UPSTREAM jp INTRON jp
2R	16670126	2R_16670126_SNP [dm3] 2R_20782621_SNP [dm6]	G	A	1.219e^-6	0.72	INTERGENIC	TF binding site mE1_TFBS_sens
3R	26547598	3R_26547598_SNP [dm3] 3R_30721876_SNP [dm6]	T	C	1.957e^-6	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19573545	2R_19573545_SNP [dm3] 2R_23686022_SNP [dm6]	G	T	2.204e^-6	0.72	UPSTREAM l_2_efl INTRON St3
3L	13024133	3L_13024133_SNP [dm3] 3L_13031033_SNP [dm6]	T	G	3.031e^-6	0.72	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	17399803	2L_17399803_DEL [dm3] 2L_17399803_DEL [dm6]	TT	T	4.036e^-6	0.72	INTRON CLIP-190
2R	14817766	2R_14817766_SNP [dm3] 2R_18930261_SNP [dm6]	G	C	4.365e^-6	0.72	INTRON sano
3R	25377380	3R_25377380_SNP [dm3] 3R_29551658_SNP [dm6]	G	A	4.708e^-6	0.72	INTERGENIC
2L	5770556	2L_5770556_SNP [dm3] 2L_5770556_SNP [dm6]	C	G	5.226e^-6	0.72	SYNONYMOUS_CODING CG9171 EXON CR31912	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13010086	3L_13010086_SNP [dm3] 3L_13016986_SNP [dm6]	C	T	5.599e^-6	0.72	DOWNSTREAM mRpL20 & 1 other INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	15185605	2R_15185605_SNP [dm3] 2R_19298100_SNP [dm6]	T	G	6.124e^-6	0.72	UPSTREAM Tab2 INTRON Tab2	TF binding site mE1_TFBS_Trl
2L	22307960	2L_22307960_SNP [dm3] 2L_22307960_SNP [dm6]	T	G	6.412e^-6	0.72	UPSTREAM CG17018 INTERGENIC	transposable element FlyBase
X	14760530	X_14760530_SNP [dm3] X_14866497_SNP [dm6]	T	C	6.666e^-6	0.72	INTRON Flo2 & 1 other
3R	13037534	3R_13037534_INS [dm3] 3R_17211812_INS [dm6]	GA	CTTTGGCTACTC...	7.197e^-6	0.72	INTERGENIC
2R	10435524	2R_10435524_SNP [dm3] 2R_14548019_SNP [dm6]	G	T	7.498e^-6	0.72	INTRON ttv
2L	22307965	2L_22307965_SNP [dm3] 2L_22307965_SNP [dm6]	C	A	7.666e^-6	0.72	UPSTREAM CG17018 INTERGENIC	transposable element FlyBase
2L	22307935	2L_22307935_SNP [dm3] 2L_22307935_SNP [dm6]	A	G	8.101e^-6	0.72	UPSTREAM CG17018 INTERGENIC	transposable element FlyBase
2R	15185604	2R_15185604_SNP [dm3] 2R_19298099_SNP [dm6]	G	A	8.527e^-6	0.72	UPSTREAM Tab2 INTRON Tab2	TF binding site mE1_TFBS_Trl
3R	12687652	3R_12687652_SNP [dm3] 3R_16861930_SNP [dm6]	A	C	8.534e^-6	0.72	INTRON iab-8	TF binding site mE1_TFBS_cad
2R	16452141	2R_16452141_SNP [dm3] 2R_20564636_SNP [dm6]	C	T	9.120e^-6	0.72	INTRON qsm
X	13775573	X_13775573_SNP [dm3] X_13881540_SNP [dm6]	G	T	9.159e^-6	0.72	INTRON mamo
3L	13024195	3L_13024195_SNP [dm3] 3L_13031095_SNP [dm6]	C	T	9.169e^-6	0.72	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	13044704	3R_13044704_SNP [dm3] 3R_17218982_SNP [dm6]	G	A	9.362e^-6	0.72	SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262
2R	10434832	2R_10434832_SNP [dm3] 2R_14547327_SNP [dm6]	C	T	1.013e^-5	0.72	UPSTREAM CG30076 INTRON ttv
2R	2142085	2R_2142085_SNP [dm3] 2R_6254580_SNP [dm6]	C	A	1.017e^-5	0.72	INTRON Pld	transposable element FlyBase
2L	634354	2L_634354_SNP [dm3] 2L_634354_SNP [dm6]	A	G	1.036e^-5	0.72	INTERGENIC
2R	16485578	2R_16485578_SNP [dm3] 2R_20598073_SNP [dm6]	A	C	1.075e^-5	0.72	INTRON bl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21808406	2L_21808406_SNP [dm3] 2L_21808406_SNP [dm6]	T	A	1.156e^-5	0.727	INTERGENIC
2R	16670323	2R_16670323_SNP [dm3] 2R_20782818_SNP [dm6]	A	T	1.186e^-5	0.727	INTERGENIC
3L	5242209	3L_5242209_DEL [dm3] 3L_5249109_DEL [dm6]	GAG	G	1.201e^-5	0.727	UPSTREAM shep INTRON shep
3L	13018112	3L_13018112_SNP [dm3] 3L_13025012_SNP [dm6]	G	A	1.251e^-5	0.733	SYNONYMOUS_CODING Zmynd10 DOWNSTREAM snoRNA:Me28S-A774a & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13407748	2R_13407748_SNP [dm3] 2R_17520243_SNP [dm6]	A	T	1.360e^-5	0.746	UTR_3_PRIME Patronin DOWNSTREAM Patronin
3R	9569924	3R_9569924_SNP [dm3] 3R_13744202_SNP [dm6]	T	G	1.389e^-5	0.746	INTRON CG34383
3L	14373650	3L_14373650_SNP [dm3] 3L_14380550_SNP [dm6]	T	C	1.397e^-5	0.746	INTERGENIC
3L	13014981	3L_13014981_SNP [dm3] 3L_13021881_SNP [dm6]	C	T	1.437e^-5	0.746	UPSTREAM AdenoK INTRON AdenoK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	843701	X_843701_SNP [dm3] X_949668_SNP [dm6]	C	A	1.510e^-5	0.746	SYNONYMOUS_CODING CG3690
3L	11158202	3L_11158202_SNP [dm3] 3L_11165102_SNP [dm6]	G	T	1.512e^-5	0.746	SYNONYMOUS_CODING Alg10 UPSTREAM CR43989
2L	19393382	2L_19393382_SNP [dm3] 2L_19393382_SNP [dm6]	A	G	1.556e^-5	0.748	UPSTREAM CG31798 INTRON CG17544	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	2214610	2R_2214610_SNP [dm3] 2R_6327105_SNP [dm6]	C	G	1.626e^-5	0.762	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
3L	5242137	3L_5242137_SNP [dm3] 3L_5249037_SNP [dm6]	T	C	1.667e^-5	0.762	UPSTREAM shep INTRON shep
3L	2593483	3L_2593483_SNP [dm3] 3L_2593483_SNP [dm6]	A	C	1.786e^-5	0.768	SYNONYMOUS_CODING dos	TF binding site mE1_TFBS_cad
3L	2593376	3L_2593376_SNP [dm3] 3L_2593376_SNP [dm6]	T	A	1.792e^-5	0.768	INTRON dos	TF binding site mE1_TFBS_cad
3R	12907399	3R_12907399_SNP [dm3] 3R_17081677_SNP [dm6]	T	G	1.801e^-5	0.768	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9436691	2L_9436691_SNP [dm3] 2L_9436691_SNP [dm6]	C	G	1.852e^-5	0.772	SYNONYMOUS_CODING CG3769 UPSTREAM RpS28-like & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12687105	3R_12687105_SNP [dm3] 3R_16861383_SNP [dm6]	C	T	2.019e^-5	0.823	INTRON iab-8	TF binding site mE1_TFBS_cad
2R	16670308	2R_16670308_SNP [dm3] 2R_20782803_SNP [dm6]	A	G	2.121e^-5	0.847	INTERGENIC
X	843474	X_843474_SNP [dm3] X_949441_SNP [dm6]	C	G	2.215e^-5	0.859	NON_SYNONYMOUS_CODING CG3690
3R	4200704	3R_4200704_SNP [dm3] 3R_8374982_SNP [dm6]	G	A	2.280e^-5	0.859	INTRON CG45263
3R	12679975	3R_12679975_SNP [dm3] 3R_16854253_SNP [dm6]	G	T	2.289e^-5	0.859	DOWNSTREAM iab-8 INTRON iab-8 & 1 other EXON iab-4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	634305	2L_634305_SNP [dm3] 2L_634305_SNP [dm6]	T	A	2.434e^-5	0.891	INTERGENIC
2L	12723512	2L_12723512_SNP [dm3] 2L_12723512_SNP [dm6]	C	T	2.639e^-5	0.891	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3R	12687065	3R_12687065_SNP [dm3] 3R_16861343_SNP [dm6]	C	T	2.706e^-5	0.891	INTRON iab-8	TF binding site mE1_TFBS_cad
3L	12710967	3L_12710967_DEL [dm3] 3L_12717867_DEL [dm6]	ATTA	A	2.746e^-5	0.891	INTERGENIC
X	12901514	X_12901514_SNP [dm3] X_13007481_SNP [dm6]	G	A	2.753e^-5	0.891	INTRON rad
2L	12723518	2L_12723518_SNP [dm3] 2L_12723518_SNP [dm6]	A	G	2.841e^-5	0.891	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
2R	6089357	2R_6089357_SNP [dm3] 2R_10201852_SNP [dm6]	C	T	2.851e^-5	0.891	INTERGENIC
2R	16670422	2R_16670422_SNP [dm3] 2R_20782917_SNP [dm6]	T	G	2.869e^-5	0.891	INTERGENIC
3L	5241981	3L_5241981_SNP [dm3] 3L_5248881_SNP [dm6]	G	A	2.896e^-5	0.891	UPSTREAM shep INTRON shep
X	19430691	X_19430691_INS [dm3] X_19536658_INS [dm6]	C	CGCC	2.993e^-5	0.891	INTRON CG32532
3L	12225620	3L_12225620_SNP [dm3] 3L_12232520_SNP [dm6]	G	A	3.039e^-5	0.891	INTRON app
2L	17399522	2L_17399522_SNP [dm3] 2L_17399522_SNP [dm6]	A	G	3.091e^-5	0.891	INTRON CLIP-190
2L	634331	2L_634331_SNP [dm3] 2L_634331_SNP [dm6]	G	T	3.167e^-5	0.891	INTERGENIC
3L	4389296	3L_4389296_SNP [dm3] 3L_4389296_SNP [dm6]	C	A	3.208e^-5	0.891	INTRON slow	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	634314	2L_634314_DEL [dm3] 2L_634314_DEL [dm6]	AT	A	3.241e^-5	0.891	INTERGENIC
X	13205542	X_13205542_SNP [dm3] X_13311509_SNP [dm6]	C	T	3.254e^-5	0.891	INTRON IP3K2
2R	5792037	2R_5792037_SNP [dm3] 2R_9904532_SNP [dm6]	G	C	3.273e^-5	0.891	INTERGENIC
2L	12725317	2L_12725317_SNP [dm3] 2L_12725317_SNP [dm6]	C	T	3.365e^-5	0.891	INTRON MRP
2L	6523453	2L_6523453_SNP [dm3] 2L_6523453_SNP [dm6]	T	A	3.407e^-5	0.891	INTRON CG31637
2L	22307897	2L_22307897_SNP [dm3] 2L_22307897_SNP [dm6]	A	T	3.418e^-5	0.891	UPSTREAM CG17018 INTERGENIC	transposable element FlyBase
2L	634321	2L_634321_SNP [dm3] 2L_634321_SNP [dm6]	C	T	3.463e^-5	0.891	INTERGENIC
3R	12686527	3R_12686527_SNP [dm3] 3R_16860805_SNP [dm6]	T	G	3.485e^-5	0.891	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12811934	2L_12811934_DEL [dm3] 2L_12811934_DEL [dm6]	GCACT	C	3.511e^-5	0.891	INTERGENIC
3L	8759370	3L_8759370_SNP [dm3] 3L_8766270_SNP [dm6]	T	C	3.515e^-5	0.891	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	21034401	3R_21034401_DEL [dm3] 3R_25208679_DEL [dm6]	CT	C	3.647e^-5	0.901	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4376840	3L_4376840_SNP [dm3] 3L_4376840_SNP [dm6]	A	G	3.653e^-5	0.901	DOWNSTREAM CR44360 INTRON DopEcR
3R	20552967	3R_20552967_SNP [dm3] 3R_24727245_SNP [dm6]	C	T	3.766e^-5	0.917	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6089360	2R_6089360_SNP [dm3] 2R_10201855_SNP [dm6]	A	C	3.929e^-5	0.921	INTERGENIC
X	19010001	X_19010001_DEL [dm3] X_19115968_DEL [dm6]	AG	T	4.083e^-5	0.921	INTERGENIC
3L	10766877	3L_10766877_SNP [dm3] 3L_10773777_SNP [dm6]	C	T	4.139e^-5	0.921	DOWNSTREAM CG43245 INTERGENIC
2L	22310214	2L_22310214_SNP [dm3] 2L_22310214_SNP [dm6]	T	G	4.214e^-5	0.921	INTRON CG17018	transposable element FlyBase
3L	12994053	3L_12994053_SNP [dm3] 3L_13000953_SNP [dm6]	A	G	4.237e^-5	0.921	INTERGENIC
3R	21034404	3R_21034404_SNP [dm3] 3R_25208682_SNP [dm6]	A	C	4.255e^-5	0.921	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	12907394	3R_12907394_SNP [dm3] 3R_17081672_SNP [dm6]	C	A	4.298e^-5	0.921	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5242237	3L_5242237_SNP [dm3] 3L_5249137_SNP [dm6]	C	G	4.362e^-5	0.921	UPSTREAM shep INTRON shep
2L	9589572	2L_9589572_SNP [dm3] 2L_9589572_SNP [dm6]	A	G	4.445e^-5	0.921	UTR_5_PRIME CG3841 UPSTREAM CG3841	regulatory region REDfly_CRMs
3L	6351640	3L_6351640_SNP [dm3] 3L_6358540_SNP [dm6]	C	A	4.463e^-5	0.921	INTERGENIC
3L	23078553	3L_23078553_DEL [dm3] 3L_23085453_DEL [dm6]	TT	T	4.495e^-5	0.921	INTERGENIC	transposable element FlyBase
3R	19012467	3R_19012467_SNP [dm3] 3R_23186745_SNP [dm6]	C	T	4.511e^-5	0.921	UTR_3_PRIME cnc
3L	14373494	3L_14373494_SNP [dm3] 3L_14380394_SNP [dm6]	G	T	4.523e^-5	0.921	INTERGENIC
3L	8354552	3L_8354552_SNP [dm3] 3L_8361452_SNP [dm6]	T	A	4.566e^-5	0.921	UPSTREAM Idh INTERGENIC
3R	12906971	3R_12906971_SNP [dm3] 3R_17081249_SNP [dm6]	C	T	4.575e^-5	0.921	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12683709	3R_12683709_SNP [dm3] 3R_16857987_SNP [dm6]	G	T	4.630e^-5	0.921	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3283462	2L_3283462_SNP [dm3] 2L_3283462_SNP [dm6]	G	A	4.653e^-5	0.921	INTERGENIC	TF binding site mE1_TFBS_inv
X	3162562	X_3162562_SNP [dm3] X_3268529_SNP [dm6]	C	A	4.837e^-5	0.921	INTRON dnc
2L	646500	2L_646500_SNP [dm3] 2L_646500_SNP [dm6]	C	A	4.889e^-5	0.921	INTRON ds
3R	26061019	3R_26061019_SNP [dm3] 3R_30235297_SNP [dm6]	A	T	4.939e^-5	0.921	INTERGENIC
3R	24902209	3R_24902209_SNP [dm3] 3R_29076487_SNP [dm6]	G	A	4.997e^-5	0.921	INTRON CG11873
2R	16670295	2R_16670295_SNP [dm3] 2R_20782790_SNP [dm6]	G	T	5.027e^-5	0.921	INTERGENIC
2L	9587665	2L_9587665_SNP [dm3] 2L_9587665_SNP [dm6]	T	A	5.031e^-5	0.921	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5789950	2R_5789950_SNP [dm3] 2R_9902445_SNP [dm6]	C	T	5.096e^-5	0.921	INTRON CG1441	TF binding site mE1_TFBS_cad
2L	21852304	2L_21852304_SNP [dm3] 2L_21852304_SNP [dm6]	G	C	5.134e^-5	0.921	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12189967	3L_12189967_SNP [dm3] 3L_12196867_SNP [dm6]	T	A	5.222e^-5	0.921	UPSTREAM CR45746 & 1 other INTERGENIC
3R	14691362	3R_14691362_SNP [dm3] 3R_18865640_SNP [dm6]	T	A	5.246e^-5	0.921	INTERGENIC
X	13334245	X_13334245_SNP [dm3] X_13440212_SNP [dm6]	C	T	5.344e^-5	0.921	INTERGENIC
X	19009947	X_19009947_SNP [dm3] X_19115914_SNP [dm6]	C	A	5.422e^-5	0.921	INTERGENIC
2R	12860076	2R_12860076_SNP [dm3] 2R_16972571_SNP [dm6]	C	T	5.610e^-5	0.921	DOWNSTREAM CR44377 INTERGENIC
2R	11422448	2R_11422448_SNP [dm3] 2R_15534943_SNP [dm6]	T	G	5.624e^-5	0.921	INTRON CG30471
3L	22182266	3L_22182266_SNP [dm3] 3L_22189166_SNP [dm6]	G	A	5.664e^-5	0.921	INTRON olf413	TF binding site mE1_TFBS_sens
2L	9722509	2L_9722509_SNP [dm3] 2L_9722509_SNP [dm6]	T	A	5.684e^-5	0.921	INTRON Nckx30C	TF binding site mE1_TFBS_sens
3R	22381442	3R_22381442_SNP [dm3] 3R_26555720_SNP [dm6]	G	T	5.692e^-5	0.921	INTRON scrib	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	2593289	3L_2593289_SNP [dm3] 3L_2593289_SNP [dm6]	C	T	5.729e^-5	0.921	SYNONYMOUS_CODING dos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15289948	3R_15289948_SNP [dm3] 3R_19464226_SNP [dm6]	A	G	5.734e^-5	0.921	INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	11628628	3L_11628628_SNP [dm3] 3L_11635528_SNP [dm6]	A	T	5.734e^-5	0.921	INTRON CG32091
2R	16667893	2R_16667893_SNP [dm3] 2R_20780388_SNP [dm6]	A	G	5.742e^-5	0.921	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12687091	3R_12687091_SNP [dm3] 3R_16861369_SNP [dm6]	T	A	5.767e^-5	0.921	INTRON iab-8	TF binding site mE1_TFBS_cad
2L	12723525	2L_12723525_SNP [dm3] 2L_12723525_SNP [dm6]	C	T	5.779e^-5	0.921	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
3R	21034419	3R_21034419_SNP [dm3] 3R_25208697_SNP [dm6]	A	T	5.814e^-5	0.921	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10867616	2R_10867616_SNP [dm3] 2R_14980111_SNP [dm6]	C	A	5.841e^-5	0.921	UTR_3_PRIME ckn
2L	7432906	2L_7432906_SNP [dm3] 2L_7432906_SNP [dm6]	G	C	5.983e^-5	0.935	INTRON CG5958
3R	13035175	3R_13035175_SNP [dm3] 3R_17209453_SNP [dm6]	C	T	6.044e^-5	0.937	INTERGENIC
3R	9732685	3R_9732685_SNP [dm3] 3R_13906963_SNP [dm6]	A	G	6.230e^-5	0.956	INTERGENIC
2L	12248082	2L_12248082_SNP [dm3] 2L_12248082_SNP [dm6]	G	T	6.333e^-5	0.956	INTRON aret
2R	1286516	2R_1286516_SNP [dm3] 2R_5399011_SNP [dm6]	T	C	6.350e^-5	0.956	INTERGENIC
2R	16982804	2R_16982804_SNP [dm3] 2R_21095299_SNP [dm6]	A	G	6.460e^-5	0.956	DOWNSTREAM CG4038 INTRON CG34396
X	1245137	X_1245137_SNP [dm3] X_1351104_SNP [dm6]	G	A	6.469e^-5	0.956	SPLICE_SITE_REGION CG12773 SYNONYMOUS_CODING CG12773
2L	5568702	2L_5568702_SNP [dm3] 2L_5568702_SNP [dm6]	T	C	6.494e^-5	0.956	INTERGENIC
X	13205566	X_13205566_SNP [dm3] X_13311533_SNP [dm6]	T	A	6.526e^-5	0.956	INTRON IP3K2
3L	13027969	3L_13027969_SNP [dm3] 3L_13034869_SNP [dm6]	A	T	6.912e^-5	0.96	INTRON CG17672	TF binding site mE1_TFBS_cad
2L	6523409	2L_6523409_SNP [dm3] 2L_6523409_SNP [dm6]	G	C	7.036e^-5	0.96	INTRON CG31637
3R	24440774	3R_24440774_SNP [dm3] 3R_28615052_SNP [dm6]	G	A	7.048e^-5	0.96	SYNONYMOUS_CODING CG10011	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22311604	2L_22311604_SNP [dm3] 2L_22311604_SNP [dm6]	T	C	7.132e^-5	0.96	UPSTREAM CG17018 INTRON CG17018	transposable element FlyBase
2R	12875252	2R_12875252_SNP [dm3] 2R_16987747_SNP [dm6]	C	T	7.170e^-5	0.96	INTRON Cbp53E	TF binding site mE1_TFBS_sbb
3L	13027966	3L_13027966_SNP [dm3] 3L_13034866_SNP [dm6]	C	T	7.242e^-5	0.96	INTRON CG17672	TF binding site mE1_TFBS_cad
3R	19053319	3R_19053319_SNP [dm3] 3R_23227597_SNP [dm6]	T	G	7.357e^-5	0.96	UPSTREAM cnc DOWNSTREAM CG4467 INTERGENIC
2R	15680424	2R_15680424_SNP [dm3] 2R_19792919_SNP [dm6]	T	C	7.371e^-5	0.96	INTERGENIC
2R	16451582	2R_16451582_SNP [dm3] 2R_20564077_SNP [dm6]	C	A	7.378e^-5	0.96	INTRON qsm
2R	20210916	2R_20210916_SNP [dm3] 2R_24323393_SNP [dm6]	G	T	7.458e^-5	0.96	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20211883	2R_20211883_SNP [dm3] 2R_24324360_SNP [dm6]	A	G	7.458e^-5	0.96	UPSTREAM CR44810 INTERGENIC
3L	4381436	3L_4381436_SNP [dm3] 3L_4381436_SNP [dm6]	C	T	7.490e^-5	0.96	SYNONYMOUS_CODING CG32240
2L	21852896	2L_21852896_DEL [dm3] 2L_21852896_DEL [dm6]	ATGAACTT	A	7.535e^-5	0.96	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12847637	2R_12847637_SNP [dm3] 2R_16960132_SNP [dm6]	G	A	7.545e^-5	0.96	UTR_5_PRIME CG9010
3L	11632636	3L_11632636_SNP [dm3] 3L_11639536_SNP [dm6]	A	C	7.596e^-5	0.96	INTRON CG32091
2R	20210915	2R_20210915_SNP [dm3] 2R_24323392_SNP [dm6]	G	T	7.614e^-5	0.96	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24903078	3R_24903078_SNP [dm3] 3R_29077356_SNP [dm6]	G	A	7.616e^-5	0.96	INTRON CG11873
2R	18859160	2R_18859160_SNP [dm3] 2R_22971637_SNP [dm6]	A	G	7.688e^-5	0.96	INTERGENIC
2R	17378085	2R_17378085_SNP [dm3] 2R_21490580_SNP [dm6]	G	C	7.693e^-5	0.96	INTRON Fkbp14
2L	10928904	2L_10928904_SNP [dm3] 2L_10928904_SNP [dm6]	C	T	7.823e^-5	0.96	INTRON dpr2
3L	12189977	3L_12189977_SNP [dm3] 3L_12196877_SNP [dm6]	T	A	7.829e^-5	0.96	UPSTREAM CR45746 & 1 other INTERGENIC
2R	10879458	2R_10879458_SNP [dm3] 2R_14991953_SNP [dm6]	C	G	7.848e^-5	0.96	DOWNSTREAM CG10265 & 1 other INTRON CG7639	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9999498	3L_9999498_SNP [dm3] 3L_10006398_SNP [dm6]	T	A	7.872e^-5	0.96	INTRON dpr6
2R	4500040	2R_4500040_SNP [dm3] 2R_8612535_SNP [dm6]	G	C	7.890e^-5	0.96	DOWNSTREAM rgr INTRON CG8642
2R	2148530	2R_2148530_DEL [dm3] 2R_6261025_DEL [dm6]	CTATCAGCTAT...	C	7.935e^-5	0.96	INTERGENIC	transposable element FlyBase
2L	9771771	2L_9771771_SNP [dm3] 2L_9771771_SNP [dm6]	G	A	8.129e^-5	0.96	SYNONYMOUS_CODING ppk16 UPSTREAM ppk18
2L	18745555	2L_18745555_SNP [dm3] 2L_18745555_SNP [dm6]	G	A	8.134e^-5	0.96	INTERGENIC
2L	6694917	2L_6694917_SNP [dm3] 2L_6694917_SNP [dm6]	A	T	8.144e^-5	0.96	INTRON Tsp
2L	9926564	2L_9926564_SNP [dm3] 2L_9926564_SNP [dm6]	C	T	8.148e^-5	0.96	SPLICE_SITE_REGION CG42366 INTRON CG42366	TF binding site mE1_TFBS_cad
3R	12677915	3R_12677915_SNP [dm3] 3R_16852193_SNP [dm6]	G	A	8.166e^-5	0.96	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8696129	3L_8696129_SNP [dm3] 3L_8703029_SNP [dm6]	C	T	8.427e^-5	0.96	INTERGENIC
2R	12815599	2R_12815599_SNP [dm3] 2R_16928094_SNP [dm6]	T	C	8.453e^-5	0.96	INTRON Pkc53E
2R	16453350	2R_16453350_DEL [dm3] 2R_20565845_DEL [dm6]	ATATATTTA	A	8.646e^-5	0.96	INTRON qsm
3L	19593599	3L_19593599_SNP [dm3] 3L_19600499_SNP [dm6]	C	A	8.649e^-5	0.96	SYNONYMOUS_CODING Taf6	TF binding site mE1_TFBS_sens
3L	8759399	3L_8759399_SNP [dm3] 3L_8766299_SNP [dm6]	C	A	8.767e^-5	0.96	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16453370	2R_16453370_SNP [dm3] 2R_20565865_SNP [dm6]	G	A	8.890e^-5	0.96	INTRON qsm
2R	2148542	2R_2148542_INS [dm3] 2R_6261037_INS [dm6]	A	ACTGCGCCAAGTTGGCAGC...	8.945e^-5	0.96	INTERGENIC	transposable element FlyBase
2L	22557233	2L_22557233_SNP [dm3] 2L_22664501_SNP [dm6]	T	G	8.969e^-5	0.96	INTRON CG40006
2R	10867097	2R_10867097_SNP [dm3] 2R_14979592_SNP [dm6]	C	T	8.990e^-5	0.96	SYNONYMOUS_CODING ckn
3L	13024698	3L_13024698_SNP [dm3] 3L_13031598_SNP [dm6]	A	T	9.023e^-5	0.96	DOWNSTREAM CR45157 INTRON CG17672	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	634323	2L_634323_SNP [dm3] 2L_634323_SNP [dm6]	A	G	9.115e^-5	0.96	INTERGENIC
2L	9588378	2L_9588378_SNP [dm3] 2L_9588378_SNP [dm6]	A	T	9.203e^-5	0.96	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2606575	3L_2606575_SNP [dm3] 3L_2606575_SNP [dm6]	C	T	9.215e^-5	0.96	INTRON Pxn
X	13436633	X_13436633_SNP [dm3] X_13542600_SNP [dm6]	A	G	9.221e^-5	0.96	INTERGENIC
2L	5419617	2L_5419617_SNP [dm3] 2L_5419617_SNP [dm6]	A	T	9.232e^-5	0.96	INTERGENIC
2L	7432399	2L_7432399_SNP [dm3] 2L_7432399_SNP [dm6]	C	G	9.247e^-5	0.96	INTRON CG5958
2L	17399703	2L_17399703_SNP [dm3] 2L_17399703_SNP [dm6]	T	G	9.260e^-5	0.96	INTRON CLIP-190
3L	11508740	3L_11508740_SNP [dm3] 3L_11515640_SNP [dm6]	T	A	9.302e^-5	0.96	INTRON CG7512
2L	22319294	2L_22319294_SNP [dm3] 2L_22319294_SNP [dm6]	G	A	9.305e^-5	0.96	INTRON CG17018
X	14471962	X_14471962_DEL [dm3] X_14577929_DEL [dm6]	GAACACAG	G	9.308e^-5	0.96	INTERGENIC
2R	4109079	2R_4109079_SNP [dm3] 2R_8221574_SNP [dm6]	C	T	9.322e^-5	0.96	INTRON LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5367092	2L_5367092_SNP [dm3] 2L_5367092_SNP [dm6]	T	A	9.382e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25888190	3R_25888190_SNP [dm3] 3R_30062468_SNP [dm6]	T	A	9.387e^-5	0.96	UPSTREAM sima INTRON sima
2L	6517474	2L_6517474_SNP [dm3] 2L_6517474_SNP [dm6]	A	G	9.392e^-5	0.96	INTRON CG31637
2L	22312301	2L_22312301_SNP [dm3] 2L_22312301_SNP [dm6]	C	T	9.403e^-5	0.96	INTRON CG17018
3L	13187460	3L_13187460_SNP [dm3] 3L_13194360_SNP [dm6]	A	G	9.532e^-5	0.96	INTERGENIC
2R	14493001	2R_14493001_SNP [dm3] 2R_18605496_SNP [dm6]	A	G	9.568e^-5	0.96	INTRON GEFmeso
3R	25547949	3R_25547949_SNP [dm3] 3R_29722227_SNP [dm6]	A	G	9.656e^-5	0.96	SYNONYMOUS_CODING CG15506 UPSTREAM CG34296 & 1 other	TF binding site mE1_TFBS_chinmo
2R	8687181	2R_8687181_SNP [dm3] 2R_12799676_SNP [dm6]	C	G	9.706e^-5	0.96	SYNONYMOUS_CODING sca UPSTREAM CR45137	TF binding site mE1_TFBS_cad
3R	19173916	3R_19173916_SNP [dm3] 3R_23348194_SNP [dm6]	T	G	9.722e^-5	0.96	NON_SYNONYMOUS_CODING DNApol-epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	13644306	2L_13644306_SNP [dm3] 2L_13644306_SNP [dm6]	A	G	9.727e^-5	0.96	INTERGENIC
2L	22312881	2L_22312881_SNP [dm3] 2L_22312881_SNP [dm6]	T	A	9.737e^-5	0.96	INTRON CG17018
3L	5242249	3L_5242249_SNP [dm3] 3L_5249149_SNP [dm6]	C	G	9.780e^-5	0.96	UPSTREAM shep INTRON shep
3R	12672244	3R_12672244_SNP [dm3] 3R_16846522_SNP [dm6]	G	A	9.905e^-5	0.96	EXON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_inv
2R	19593251	2R_19593251_SNP [dm3] 2R_23705728_SNP [dm6]	G	A	9.979e^-5	0.96	SYNONYMOUS_CODING l_2_not DOWNSTREAM l_2_dtl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9505062	2L_9505062_DEL [dm3] 2L_9505062_DEL [dm6]	ATAAATTTGATAAAAGA...	A	1.015e^-4	0.96	INTRON CG33298
2R	16805942	2R_16805942_SNP [dm3] 2R_20918437_SNP [dm6]	T	C	1.020e^-4	0.96	INTRON Rx	TF binding site mE1_TFBS_chinmo
2R	2173540	2R_2173540_SNP [dm3] 2R_6286035_SNP [dm6]	A	G	1.021e^-4	0.96	INTERGENIC	transposable element FlyBase
2R	17377811	2R_17377811_SNP [dm3] 2R_21490306_SNP [dm6]	A	G	1.036e^-4	0.96	INTRON Fkbp14
2R	10867612	2R_10867612_DEL [dm3] 2R_14980107_DEL [dm6]	TGG	T	1.038e^-4	0.96	UTR_3_PRIME ckn
X	18390841	X_18390841_SNP [dm3] X_18496808_SNP [dm6]	G	A	1.039e^-4	0.96	SYNONYMOUS_CODING GalNAc-T2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4009167	3L_4009167_SNP [dm3] 3L_4009167_SNP [dm6]	A	G	1.048e^-4	0.96	INTERGENIC
2R	9790310	2R_9790310_SNP [dm3] 2R_13902805_SNP [dm6]	C	T	1.056e^-4	0.96	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
2L	14366824	2L_14366824_SNP [dm3] 2L_14366824_SNP [dm6]	T	C	1.063e^-4	0.96	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
2L	17214392	2L_17214392_SNP [dm3] 2L_17214392_SNP [dm6]	A	G	1.067e^-4	0.96	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20210093	2R_20210093_SNP [dm3] 2R_24322570_SNP [dm6]	A	T	1.068e^-4	0.96	INTERGENIC
X	2792581	X_2792581_SNP [dm3] X_2898548_SNP [dm6]	G	A	1.077e^-4	0.96	INTRON kirre
2R	11460420	2R_11460420_SNP [dm3] 2R_15572915_SNP [dm6]	T	C	1.077e^-4	0.96	NON_SYNONYMOUS_CODING CG30466 DOWNSTREAM CG8204
2L	9654985	2L_9654985_SNP [dm3] 2L_9654985_SNP [dm6]	G	C	1.085e^-4	0.96	SYNONYMOUS_CODING Apoltp
2L	9669119	2L_9669119_SNP [dm3] 2L_9669119_SNP [dm6]	T	C	1.088e^-4	0.96	DOWNSTREAM CR44150 INTERGENIC
3L	14392067	3L_14392067_SNP [dm3] 3L_14398967_SNP [dm6]	T	A	1.091e^-4	0.96	INTERGENIC
3L	10433005	3L_10433005_SNP [dm3] 3L_10439905_SNP [dm6]	T	G	1.092e^-4	0.96	INTERGENIC
2L	14445314	2L_14445314_SNP [dm3] 2L_14445314_SNP [dm6]	T	A	1.098e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	23059699	3L_23059699_SNP [dm3] 3L_23066599_SNP [dm6]	A	G	1.105e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
3L	13019494	3L_13019494_SNP [dm3] 3L_13026394_SNP [dm6]	T	A	1.107e^-4	0.96	UTR_5_PRIME Zmynd10	TF binding site mE1_TFBS_cad
X	17653761	X_17653761_DEL [dm3] X_17759728_DEL [dm6]	ATGGCCAAGAAACTCTGGGA...	A	1.108e^-4	0.96	INTERGENIC
2R	17425737	2R_17425737_SNP [dm3] 2R_21538232_SNP [dm6]	T	A	1.114e^-4	0.96	UPSTREAM CG30287 DOWNSTREAM CG33226 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
X	12914933	X_12914933_SNP [dm3] X_13020900_SNP [dm6]	G	A	1.119e^-4	0.96	INTRON rad
2R	17581200	2R_17581200_SNP [dm3] 2R_21693695_SNP [dm6]	A	T	1.121e^-4	0.96	DOWNSTREAM Ppcdc & 1 other INTRON CngB	TF binding site mE1_TFBS_cad
2R	2145800	2R_2145800_SNP [dm3] 2R_6258295_SNP [dm6]	A	G	1.131e^-4	0.96	INTERGENIC	transposable element FlyBase
2L	17949471	2L_17949471_SNP [dm3] 2L_17949471_SNP [dm6]	G	A	1.137e^-4	0.96	DOWNSTREAM CR44397 INTRON CR44398
2L	17949473	2L_17949473_SNP [dm3] 2L_17949473_SNP [dm6]	C	T	1.137e^-4	0.96	DOWNSTREAM CR44397 INTRON CR44398
2R	14705688	2R_14705688_SNP [dm3] 2R_18818183_SNP [dm6]	G	A	1.140e^-4	0.96	INTERGENIC
2R	14975115	2R_14975115_SNP [dm3] 2R_19087610_SNP [dm6]	G	T	1.143e^-4	0.96	INTRON 5-HT1A
2L	22311238	2L_22311238_SNP [dm3] 2L_22311238_SNP [dm6]	T	A	1.151e^-4	0.96	UPSTREAM CG17018 INTRON CG17018	transposable element FlyBase
2L	9687567	2L_9687567_SNP [dm3] 2L_9687567_SNP [dm6]	G	A	1.161e^-4	0.96	INTRON Pka-C1
3L	18275042	3L_18275042_SNP [dm3] 3L_18281942_SNP [dm6]	C	T	1.168e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11508744	3L_11508744_SNP [dm3] 3L_11515644_SNP [dm6]	T	A	1.169e^-4	0.96	INTRON CG7512
3L	13028021	3L_13028021_SNP [dm3] 3L_13034921_SNP [dm6]	C	A	1.171e^-4	0.96	INTRON CG17672	TF binding site mE1_TFBS_cad
2R	19040069	2R_19040069_SNP [dm3] 2R_23152546_SNP [dm6]	A	G	1.177e^-4	0.96	UPSTREAM CG43207 INTERGENIC
3L	12250456	3L_12250456_SNP [dm3] 3L_12257356_SNP [dm6]	C	G	1.180e^-4	0.96	INTRON app
2L	12720606	2L_12720606_SNP [dm3] 2L_12720606_SNP [dm6]	C	T	1.181e^-4	0.96	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_cad
3R	12684625	3R_12684625_SNP [dm3] 3R_16858903_SNP [dm6]	A	G	1.182e^-4	0.96	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20210067	2R_20210067_INS [dm3] 2R_24322544_INS [dm6]	T	TGAGT	1.191e^-4	0.963	INTERGENIC
2L	5367090	2L_5367090_SNP [dm3] 2L_5367090_SNP [dm6]	T	A	1.199e^-4	0.965	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11340291	3L_11340291_SNP [dm3] 3L_11347191_SNP [dm6]	T	C	1.219e^-4	0.973	INTERGENIC
2R	19202894	2R_19202894_DEL [dm3] 2R_23315371_DEL [dm6]	CC	C	1.220e^-4	0.973	INTERGENIC
3R	22097233	3R_22097233_SNP [dm3] 3R_26271511_SNP [dm6]	G	A	1.243e^-4	0.988	INTRON CG6154
3R	12666196	3R_12666196_SNP [dm3] 3R_16840474_SNP [dm6]	A	T	1.265e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	13277963	2L_13277963_SNP [dm3] 2L_13277963_SNP [dm6]	A	G	1.271e^-4	1	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17653715	X_17653715_DEL [dm3] X_17759682_DEL [dm6]	CAAG	C	1.276e^-4	1	INTERGENIC
X	17653802	X_17653802_SNP [dm3] X_17759769_SNP [dm6]	C	T	1.281e^-4	1	INTERGENIC
3L	18130259	3L_18130259_SNP [dm3] 3L_18137159_SNP [dm6]	G	A	1.292e^-4	1	UPSTREAM CR44669 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17915624	2R_17915624_SNP [dm3] 2R_22028119_SNP [dm6]	C	A	1.306e^-4	1	INTRON CG34370
2R	16667773	2R_16667773_SNP [dm3] 2R_20780268_SNP [dm6]	T	G	1.308e^-4	1	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
3R	26576242	3R_26576242_SNP [dm3] 3R_30750520_SNP [dm6]	T	A	1.326e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13852108	3L_13852108_SNP [dm3] 3L_13859008_SNP [dm6]	G	A	1.340e^-4	1	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12483640	3L_12483640_SNP [dm3] 3L_12490540_SNP [dm6]	G	A	1.353e^-4	1	UTR_5_PRIME CG10660 UPSTREAM CG10660 EXON CR45681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2795634	2L_2795634_SNP [dm3] 2L_2795634_SNP [dm6]	C	T	1.358e^-4	1	UPSTREAM Syt1 INTRON Syt1
2L	9436343	2L_9436343_SNP [dm3] 2L_9436343_SNP [dm6]	G	C	1.364e^-4	1	SYNONYMOUS_CODING CG3769 UPSTREAM RpS28-like
2R	18632877	2R_18632877_SNP [dm3] 2R_22745372_SNP [dm6]	G	T	1.366e^-4	1	INTRON CG42260
3L	12189968	3L_12189968_SNP [dm3] 3L_12196868_SNP [dm6]	G	A	1.376e^-4	1	UPSTREAM CR45746 & 1 other INTERGENIC
2L	22319272	2L_22319272_SNP [dm3] 2L_22319272_SNP [dm6]	T	A	1.390e^-4	1	INTRON CG17018
3R	9068044	3R_9068044_SNP [dm3] 3R_13242322_SNP [dm6]	T	C	1.403e^-4	1	INTRON Ace
2L	21852904	2L_21852904_INS [dm3] 2L_21852904_INS [dm6]	G	GTCGTCGTATTA...	1.408e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14835694	2R_14835694_SNP [dm3] 2R_18948189_SNP [dm6]	G	C	1.409e^-4	1	INTRON sano
2L	7241448	2L_7241448_SNP [dm3] 2L_7241448_SNP [dm6]	C	G	1.413e^-4	1	UPSTREAM Ndae1 INTRON Ndae1
2R	1326397	2R_1326397_INS [dm3] 2R_5438892_INS [dm6]	T	TCTTG	1.419e^-4	1	INTRON laccase2	transposable element FlyBase
3L	13185182	3L_13185182_SNP [dm3] 3L_13192082_SNP [dm6]	G	A	1.429e^-4	1	INTERGENIC
3L	9291016	3L_9291016_SNP [dm3] 3L_9297916_SNP [dm6]	G	T	1.443e^-4	1	INTERGENIC
2L	7484103	2L_7484103_SNP [dm3] 2L_7484103_SNP [dm6]	C	A	1.451e^-4	1	INTRON Ziz	TF binding site mE1_TFBS_inv
3L	13015036	3L_13015036_SNP [dm3] 3L_13021936_SNP [dm6]	T	A	1.451e^-4	1	UPSTREAM AdenoK INTRON AdenoK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17399689	2L_17399689_SNP [dm3] 2L_17399689_SNP [dm6]	A	C	1.453e^-4	1	INTRON CLIP-190
3R	21705341	3R_21705341_DEL [dm3] 3R_25879619_DEL [dm6]	AA	A	1.455e^-4	1	INTRON Tsp96F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10435280	2R_10435280_SNP [dm3] 2R_14547775_SNP [dm6]	T	A	1.463e^-4	1	INTRON ttv
3R	17344166	3R_17344166_SNP [dm3] 3R_21518444_SNP [dm6]	T	C	1.469e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23413413	3R_23413413_SNP [dm3] 3R_27587691_SNP [dm6]	G	A	1.469e^-4	1	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12797294	2L_12797294_SNP [dm3] 2L_12797294_SNP [dm6]	G	A	1.510e^-4	1	INTERGENIC
2L	14371510	2L_14371510_SNP [dm3] 2L_14371510_SNP [dm6]	C	T	1.511e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3L	7468803	3L_7468803_SNP [dm3] 3L_7475703_SNP [dm6]	T	C	1.522e^-4	1	INTRON CG43292
X	17653786	X_17653786_SNP [dm3] X_17759753_SNP [dm6]	A	G	1.525e^-4	1	INTERGENIC
X	3182758	X_3182758_SNP [dm3] X_3288725_SNP [dm6]	T	A	1.527e^-4	1	UPSTREAM dnc INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	18633000	2R_18633000_SNP [dm3] 2R_22745495_SNP [dm6]	G	C	1.541e^-4	1	INTRON CG42260
2L	7432676	2L_7432676_SNP [dm3] 2L_7432676_SNP [dm6]	G	T	1.541e^-4	1	INTRON CG5958
3L	13032223	3L_13032223_SNP [dm3] 3L_13039123_SNP [dm6]	G	A	1.553e^-4	1	NON_SYNONYMOUS_CODING SRm160	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	622913	2L_622913_SNP [dm3] 2L_622913_SNP [dm6]	T	G	1.555e^-4	1	UPSTREAM CR44797 DOWNSTREAM CR44798 INTERGENIC
3L	13667440	3L_13667440_SNP [dm3] 3L_13674340_SNP [dm6]	A	G	1.564e^-4	1	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	8436499	3R_8436499_SNP [dm3] 3R_12610777_SNP [dm6]	C	T	1.573e^-4	1	INTERGENIC
2R	16982782	2R_16982782_SNP [dm3] 2R_21095277_SNP [dm6]	A	G	1.578e^-4	1	DOWNSTREAM CG4038 INTRON CG34396
3R	19792983	3R_19792983_SNP [dm3] 3R_23967261_SNP [dm6]	G	A	1.578e^-4	1	INTRON CG31140
2R	19468748	2R_19468748_SNP [dm3] 2R_23581225_SNP [dm6]	T	C	1.580e^-4	1	UTR_5_PRIME apt INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1823687	3L_1823687_SNP [dm3] 3L_1823687_SNP [dm6]	A	C	1.580e^-4	1	DOWNSTREAM GV1 & 1 other INTERGENIC
3R	21034366	3R_21034366_SNP [dm3] 3R_25208644_SNP [dm6]	A	G	1.585e^-4	1	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	22739231	2L_22739231_SNP [dm3] 2L_22846499_SNP [dm6]	T	A	1.585e^-4	1	INTRON CG17715
2L	9585884	2L_9585884_SNP [dm3] 2L_9585884_SNP [dm6]	G	T	1.587e^-4	1	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16464045	2R_16464045_SNP [dm3] 2R_20576540_SNP [dm6]	T	G	1.589e^-4	1	INTRON qsm
2R	8583848	2R_8583848_INS [dm3] 2R_12696343_INS [dm6]	A	AA	1.598e^-4	1	INTERGENIC
2R	2141972	2R_2141972_SNP [dm3] 2R_6254467_SNP [dm6]	T	A	1.601e^-4	1	INTRON Pld
3L	13024053	3L_13024053_SNP [dm3] 3L_13030953_SNP [dm6]	C	A	1.603e^-4	1	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	16463593	2R_16463593_SNP [dm3] 2R_20576088_SNP [dm6]	G	C	1.607e^-4	1	INTRON qsm
2L	16091515	2L_16091515_SNP [dm3] 2L_16091515_SNP [dm6]	A	T	1.610e^-4	1	INTERGENIC
3L	11420232	3L_11420232_SNP [dm3] 3L_11427132_SNP [dm6]	A	G	1.614e^-4	1	DOWNSTREAM CG7560 INTERGENIC
3R	12906965	3R_12906965_INS [dm3] 3R_17081243_INS [dm6]	A	AA	1.618e^-4	1	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13331931	3L_13331931_SNP [dm3] 3L_13338831_SNP [dm6]	T	G	1.626e^-4	1	INTERGENIC
2L	9492682	2L_9492682_SNP [dm3] 2L_9492682_SNP [dm6]	T	G	1.629e^-4	1	NON_SYNONYMOUS_CODING Gdi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9584727	2L_9584727_SNP [dm3] 2L_9584727_SNP [dm6]	G	C	1.639e^-4	1	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12678023	3R_12678023_SNP [dm3] 3R_16852301_SNP [dm6]	T	G	1.642e^-4	1	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	22110515	2L_22110515_INS [dm3] 2L_22110515_INS [dm6]	A	AA	1.643e^-4	1	DOWNSTREAM CG6675 INTERGENIC
2L	12367044	2L_12367044_SNP [dm3] 2L_12367044_SNP [dm6]	G	C	1.644e^-4	1	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
3L	11419511	3L_11419511_SNP [dm3] 3L_11426411_SNP [dm6]	T	C	1.657e^-4	1	DOWNSTREAM CG7560 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11620227	3L_11620227_SNP [dm3] 3L_11627127_SNP [dm6]	A	G	1.669e^-4	1	SYNONYMOUS_CODING PCID2 UPSTREAM CG18815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16311349	2R_16311349_SNP [dm3] 2R_20423844_SNP [dm6]	A	C	1.674e^-4	1	UPSTREAM CG12484 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17198714	2L_17198714_SNP [dm3] 2L_17198714_SNP [dm6]	T	C	1.676e^-4	1	INTRON beat-IIIc	TF binding site mE1_TFBS_zfh1
2R	9519763	2R_9519763_SNP [dm3] 2R_13632258_SNP [dm6]	C	T	1.683e^-4	1	INTRON fas
2R	14564921	2R_14564921_SNP [dm3] 2R_18677416_SNP [dm6]	A	T	1.684e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	14129704	3L_14129704_SNP [dm3] 3L_14136604_SNP [dm6]	G	C	1.708e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi
3L	8580108	3L_8580108_SNP [dm3] 3L_8587008_SNP [dm6]	C	T	1.709e^-4	1	INTRON CG43078	TF binding site mE1_TFBS_chinmo
2R	5584797	2R_5584797_SNP [dm3] 2R_9697292_SNP [dm6]	C	A	1.724e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	19519726	2R_19519726_SNP [dm3] 2R_23632203_SNP [dm6]	C	T	1.725e^-4	1	UPSTREAM retn INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	18675061	3L_18675061_SNP [dm3] 3L_18681961_SNP [dm6]	C	T	1.727e^-4	1	UPSTREAM CG32202 & 1 other DOWNSTREAM Chmp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11272842	X_11272842_SNP [dm3] X_11378809_SNP [dm6]	T	C	1.727e^-4	1	INTRON dlg1
2L	2792521	2L_2792521_SNP [dm3] 2L_2792521_SNP [dm6]	C	T	1.730e^-4	1	SYNONYMOUS_CODING Syt1 UTR_3_PRIME Syt1
X	3162563	X_3162563_SNP [dm3] X_3268530_SNP [dm6]	C	A	1.737e^-4	1	INTRON dnc
X	19278990	X_19278990_SNP [dm3] X_19384957_SNP [dm6]	A	C	1.743e^-4	1	INTRON kek5
2R	18158356	2R_18158356_SNP [dm3] 2R_22270851_SNP [dm6]	C	T	1.762e^-4	1	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19527743	2R_19527743_SNP [dm3] 2R_23640220_SNP [dm6]	G	T	1.767e^-4	1	INTRON retn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	21704938	3R_21704938_SNP [dm3] 3R_25879216_SNP [dm6]	T	C	1.768e^-4	1	INTRON Tsp96F
3L	15098951	3L_15098951_SNP [dm3] 3L_15105851_SNP [dm6]	C	A	1.769e^-4	1	UPSTREAM CTPsyn & 1 other INTRON CTPsyn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12279853	3L_12279853_SNP [dm3] 3L_12286753_SNP [dm6]	A	G	1.779e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15618392	3R_15618392_SNP [dm3] 3R_19792670_SNP [dm6]	A	G	1.782e^-4	1	INTERGENIC
2R	11721285	2R_11721285_SNP [dm3] 2R_15833780_SNP [dm6]	T	C	1.785e^-4	1	INTRON tun & 1 other	regulatory region REDfly_CRMs
2R	2141006	2R_2141006_DEL [dm3] 2R_6253501_DEL [dm6]	AGTTTTAATAAG...	A	1.790e^-4	1	INTRON Pld	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7410100	2R_7410100_SNP [dm3] 2R_11522595_SNP [dm6]	A	G	1.807e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11620107	3L_11620107_SNP [dm3] 3L_11627007_SNP [dm6]	T	C	1.810e^-4	1	SYNONYMOUS_CODING PCID2 UPSTREAM CG6083	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11620110	3L_11620110_SNP [dm3] 3L_11627010_SNP [dm6]	T	C	1.810e^-4	1	SYNONYMOUS_CODING PCID2 UPSTREAM CG6083	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	22089660	2L_22089660_SNP [dm3] 2L_22089660_SNP [dm6]	G	C	1.814e^-4	1	INTERGENIC	transposable element FlyBase
3L	8084726	3L_8084726_SNP [dm3] 3L_8091626_SNP [dm6]	C	G	1.821e^-4	1	SYNONYMOUS_CODING CG7565 INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5769391	2L_5769391_SNP [dm3] 2L_5769391_SNP [dm6]	T	C	1.834e^-4	1	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
3R	25375558	3R_25375558_SNP [dm3] 3R_29549836_SNP [dm6]	T	G	1.844e^-4	1	INTERGENIC
2R	8213988	2R_8213988_SNP [dm3] 2R_12326483_SNP [dm6]	C	A	1.847e^-4	1	UTR_5_PRIME garz UPSTREAM CG8841	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16972518	3L_16972518_DEL [dm3] 3L_16979418_DEL [dm6]	CTTTTATTTACATTGGTC...	C	1.853e^-4	1	INTRON Exn
3L	1840464	3L_1840464_SNP [dm3] 3L_1840464_SNP [dm6]	C	T	1.859e^-4	1	UTR_3_PRIME Cpr62Bc
2L	17532793	2L_17532793_SNP [dm3] 2L_17532793_SNP [dm6]	T	C	1.860e^-4	1	UPSTREAM CG15145 INTERGENIC
2L	9616245	2L_9616245_SNP [dm3] 2L_9616245_SNP [dm6]	A	G	1.869e^-4	1	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S DOWNSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl
2R	19607654	2R_19607654_SNP [dm3] 2R_23720131_SNP [dm6]	G	T	1.876e^-4	1	UPSTREAM CG18128 DOWNSTREAM CR45325 INTRON Sesn
2R	20211885	2R_20211885_SNP [dm3] 2R_24324362_SNP [dm6]	A	T	1.880e^-4	1	UPSTREAM CR44810 INTERGENIC
3L	10642294	3L_10642294_SNP [dm3] 3L_10649194_SNP [dm6]	A	T	1.893e^-4	1	INTRON CG32066
3R	26119799	3R_26119799_SNP [dm3] 3R_30294077_SNP [dm6]	A	C	1.904e^-4	1	INTRON hdc	TF binding site BDTNP1_TFBS_dl
3L	4383224	3L_4383224_SNP [dm3] 3L_4383224_SNP [dm6]	T	G	1.905e^-4	1	INTERGENIC
3R	18436141	3R_18436141_SNP [dm3] 3R_22610419_SNP [dm6]	T	C	1.921e^-4	1	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7753986	2R_7753986_INS [dm3] 2R_11866481_INS [dm6]	A	AA	1.932e^-4	1	UPSTREAM CR42532 & 1 other INTERGENIC
2R	14975032	2R_14975032_INS [dm3] 2R_19087527_INS [dm6]	G	GCATG	1.932e^-4	1	INTRON 5-HT1A
2R	16454859	2R_16454859_SNP [dm3] 2R_20567354_SNP [dm6]	T	C	1.951e^-4	1	INTRON qsm
2L	12943810	2L_12943810_SNP [dm3] 2L_12943810_SNP [dm6]	G	T	1.960e^-4	1	INTERGENIC
3R	12907478	3R_12907478_SNP [dm3] 3R_17081756_SNP [dm6]	T	A	1.967e^-4	1	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8701618	2L_8701618_SNP [dm3] 2L_8701618_SNP [dm6]	T	G	1.968e^-4	1	INTRON Hnf4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	26542615	3R_26542615_DEL [dm3] 3R_30716893_DEL [dm6]	AT	A	1.984e^-4	1	INTERGENIC
X	13771999	X_13771999_SNP [dm3] X_13877966_SNP [dm6]	C	T	2.000e^-4	1	INTRON mamo
2L	17270587	2L_17270587_SNP [dm3] 2L_17270587_SNP [dm6]	A	T	2.000e^-4	1	INTERGENIC
3R	11990659	3R_11990659_SNP [dm3] 3R_16164937_SNP [dm6]	T	C	2.004e^-4	1	INTRON CG6006
3R	878740	3R_878740_SNP [dm3] 3R_5053018_SNP [dm6]	T	A	2.006e^-4	1	DOWNSTREAM CR45588 INTERGENIC	TF binding site mE1_TFBS_cad
2L	12795659	2L_12795659_INS [dm3] 2L_12795659_INS [dm6]	T	TTAAAAA	2.006e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21794874	2L_21794874_SNP [dm3] 2L_21794874_SNP [dm6]	G	A	2.008e^-4	1	INTRON CG31612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	636071	2L_636071_SNP [dm3] 2L_636071_SNP [dm6]	G	A	2.008e^-4	1	INTERGENIC
2L	3980354	2L_3980354_SNP [dm3] 2L_3980354_SNP [dm6]	G	A	2.015e^-4	1	INTRON fred
X	13043685	X_13043685_SNP [dm3] X_13149652_SNP [dm6]	A	T	2.024e^-4	1	INTRON CG32645
2L	14371512	2L_14371512_SNP [dm3] 2L_14371512_SNP [dm6]	A	C	2.031e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3L	14190377	3L_14190377_SNP [dm3] 3L_14197277_SNP [dm6]	A	T	2.032e^-4	1	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11340262	3L_11340262_SNP [dm3] 3L_11347162_SNP [dm6]	A	T	2.060e^-4	1	INTERGENIC
2R	16457860	2R_16457860_SNP [dm3] 2R_20570355_SNP [dm6]	C	T	2.069e^-4	1	INTRON qsm	TF binding site BDTNP1_TFBS_prd
2R	16670229	2R_16670229_SNP [dm3] 2R_20782724_SNP [dm6]	T	G	2.070e^-4	1	INTERGENIC
2R	2141062	2R_2141062_SNP [dm3] 2R_6253557_SNP [dm6]	T	C	2.071e^-4	1	INTRON Pld	TF binding site mE1_TFBS_cad
2R	6922210	2R_6922210_SNP [dm3] 2R_11034705_SNP [dm6]	A	G	2.071e^-4	1	INTRON luna	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8749727	3L_8749727_SNP [dm3] 3L_8756627_SNP [dm6]	G	A	2.075e^-4	1	NON_SYNONYMOUS_CODING CG6576 INTRON Fhos
2L	5365535	2L_5365535_SNP [dm3] 2L_5365535_SNP [dm6]	C	A	2.082e^-4	1	UTR_3_PRIME nompC DOWNSTREAM nompC	TF binding site mE1_TFBS_bab1
3R	12666125	3R_12666125_SNP [dm3] 3R_16840403_SNP [dm6]	C	T	2.083e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	5616091	X_5616091_SNP [dm3] X_5722058_SNP [dm6]	A	G	2.084e^-4	1	SYNONYMOUS_CODING CG32758	TF binding site mE1_TFBS_cad
2R	793418	2R_793418_SNP [dm3] 2R_4905913_SNP [dm6]	G	T	2.085e^-4	1	INTRON CG44102
3L	18248160	3L_18248160_SNP [dm3] 3L_18255060_SNP [dm6]	C	G	2.111e^-4	1	INTERGENIC
2L	7829639	2L_7829639_SNP [dm3] 2L_7829639_SNP [dm6]	C	T	2.118e^-4	1	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	3440576	2L_3440576_SNP [dm3] 2L_3440576_SNP [dm6]	C	A	2.123e^-4	1	INTERGENIC
2R	9018106	2R_9018106_SNP [dm3] 2R_13130601_SNP [dm6]	G	A	2.126e^-4	1	INTRON CG13326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15093439	3L_15093439_SNP [dm3] 3L_15100339_SNP [dm6]	A	G	2.136e^-4	1	UPSTREAM CR43973 INTRON CTPsyn EXON CR43972	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16464044	2R_16464044_SNP [dm3] 2R_20576539_SNP [dm6]	C	A	2.136e^-4	1	INTRON qsm
X	8626519	X_8626519_INS [dm3] X_8732486_INS [dm6]	C	CAC	2.141e^-4	1	INTERGENIC
2R	5583825	2R_5583825_SNP [dm3] 2R_9696320_SNP [dm6]	C	T	2.141e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3L	18675066	3L_18675066_SNP [dm3] 3L_18681966_SNP [dm6]	T	A	2.146e^-4	1	UPSTREAM CG32202 & 1 other DOWNSTREAM Chmp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12201729	3L_12201729_SNP [dm3] 3L_12208629_SNP [dm6]	G	T	2.149e^-4	1	DOWNSTREAM app INTRON app
2L	14080305	2L_14080305_DEL [dm3] 2L_14080305_DEL [dm6]	TCTGTT	T	2.152e^-4	1	INTRON nAChRalpha5
2L	16572413	2L_16572413_INS [dm3] 2L_16572413_INS [dm6]	C	ATG	2.165e^-4	1	INTRON CG42389
2R	2141088	2R_2141088_SNP [dm3] 2R_6253583_SNP [dm6]	A	C	2.170e^-4	1	INTRON Pld	TF binding site mE1_TFBS_cad
X	14471042	X_14471042_SNP [dm3] X_14577009_SNP [dm6]	A	T	2.170e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14253256	3L_14253256_SNP [dm3] 3L_14260156_SNP [dm6]	C	T	2.177e^-4	1	INTERGENIC
2L	21788039	2L_21788039_SNP [dm3] 2L_21788039_SNP [dm6]	T	C	2.183e^-4	1	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	7432659	2L_7432659_SNP [dm3] 2L_7432659_SNP [dm6]	G	T	2.187e^-4	1	INTRON CG5958
2R	10913579	2R_10913579_INS [dm3] 2R_15026074_INS [dm6]	A	ATTCATAGGCGAA...	2.190e^-4	1	DOWNSTREAM CR45256 INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14371525	2L_14371525_SNP [dm3] 2L_14371525_SNP [dm6]	T	G	2.202e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3R	26542606	3R_26542606_SNP [dm3] 3R_30716884_SNP [dm6]	C	G	2.210e^-4	1	INTERGENIC
2R	17366434	2R_17366434_SNP [dm3] 2R_21478929_SNP [dm6]	C	A	2.213e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	14497882	3R_14497882_SNP [dm3] 3R_18672160_SNP [dm6]	T	G	2.213e^-4	1	DOWNSTREAM CG31230 INTRON CG7702
2L	22310213	2L_22310213_SNP [dm3] 2L_22310213_SNP [dm6]	A	T	2.219e^-4	1	INTRON CG17018	transposable element FlyBase
3R	19132467	3R_19132467_SNP [dm3] 3R_23306745_SNP [dm6]	T	C	2.220e^-4	1	INTRON pnt
3R	21337994	3R_21337994_SNP [dm3] 3R_25512272_SNP [dm6]	A	G	2.224e^-4	1	INTERGENIC
2L	622960	2L_622960_DEL [dm3] 2L_622960_DEL [dm6]	TA	T	2.233e^-4	1	UPSTREAM CR44797 DOWNSTREAM CR44798 INTERGENIC
3R	12680293	3R_12680293_SNP [dm3] 3R_16854571_SNP [dm6]	C	G	2.233e^-4	1	DOWNSTREAM iab-8 INTRON iab-8 & 1 other EXON iab-4
3L	21194240	3L_21194240_DEL [dm3] 3L_21201140_DEL [dm6]	AA	A	2.234e^-4	1	UPSTREAM CG33056 INTRON CG33054 & 1 other
3L	10411933	3L_10411933_SNP [dm3] 3L_10418833_SNP [dm6]	T	G	2.234e^-4	1	INTERGENIC
3L	14190375	3L_14190375_INS [dm3] 3L_14197275_INS [dm6]	G	GATT	2.241e^-4	1	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21794872	2L_21794872_SNP [dm3] 2L_21794872_SNP [dm6]	A	T	2.242e^-4	1	INTRON CG31612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	18675080	3L_18675080_SNP [dm3] 3L_18681980_SNP [dm6]	T	A	2.249e^-4	1	UPSTREAM CG32202 & 1 other DOWNSTREAM Chmp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14694624	X_14694624_SNP [dm3] X_14800591_SNP [dm6]	T	G	2.250e^-4	1	NON_SYNONYMOUS_CODING rut
2R	19179840	2R_19179840_SNP [dm3] 2R_23292317_SNP [dm6]	A	T	2.252e^-4	1	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6010193	2L_6010193_SNP [dm3] 2L_6010193_SNP [dm6]	A	G	2.283e^-4	1	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo
2L	6137770	2L_6137770_SNP [dm3] 2L_6137770_SNP [dm6]	T	A	2.284e^-4	1	INTERGENIC
2R	7156697	2R_7156697_SNP [dm3] 2R_11269192_SNP [dm6]	C	T	2.291e^-4	1	INTRON Cpr47Ef
3L	22249172	3L_22249172_DEL [dm3] 3L_22256072_DEL [dm6]	ATACATACATA...	A	2.292e^-4	1	INTERGENIC
X	17459818	X_17459818_SNP [dm3] X_17565785_SNP [dm6]	G	T	2.292e^-4	1	DOWNSTREAM ppk23 INTERGENIC
2R	5537090	2R_5537090_SNP [dm3] 2R_9649585_SNP [dm6]	G	T	2.293e^-4	1	INTRON Mmp2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9574975	3R_9574975_SNP [dm3] 3R_13749253_SNP [dm6]	T	A	2.311e^-4	1	INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12879529	3L_12879529_SNP [dm3] 3L_12886429_SNP [dm6]	A	C	2.312e^-4	1	NON_SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_sens
2R	20437910	2R_20437910_SNP [dm3] 2R_24550387_SNP [dm6]	C	A	2.313e^-4	1	INTRON CG4622 & 1 other
2L	22304980	2L_22304980_SNP [dm3] 2L_22304980_SNP [dm6]	T	C	2.320e^-4	1	INTERGENIC
2R	1087387	2R_1087387_SNP [dm3] 2R_5199882_SNP [dm6]	T	A	2.329e^-4	1	INTRON Nipped-A
2L	9378551	2L_9378551_SNP [dm3] 2L_9378551_SNP [dm6]	C	A	2.337e^-4	1	INTRON Shawl
3L	20914199	3L_20914199_SNP [dm3] 3L_20921099_SNP [dm6]	A	T	2.346e^-4	1	DOWNSTREAM CR43929 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26271093	3R_26271093_SNP [dm3] 3R_30445371_SNP [dm6]	C	T	2.351e^-4	1	UPSTREAM Osi23 DOWNSTREAM aralar1 INTERGENIC
2L	22164158	2L_22164158_SNP [dm3] 2L_22164158_SNP [dm6]	A	T	2.358e^-4	1	UTR_3_PRIME CG42748
2L	629708	2L_629708_SNP [dm3] 2L_629708_SNP [dm6]	T	C	2.370e^-4	1	DOWNSTREAM CR45369 INTERGENIC
3L	13331869	3L_13331869_SNP [dm3] 3L_13338769_SNP [dm6]	C	G	2.372e^-4	1	INTERGENIC
2R	13460104	2R_13460104_SNP [dm3] 2R_17572599_SNP [dm6]	G	T	2.372e^-4	1	UPSTREAM CG42239 & 1 other DOWNSTREAM POSH INTRON CG14482	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12145200	2R_12145200_SNP [dm3] 2R_16257695_SNP [dm6]	T	A	2.379e^-4	1	INTRON CngA
2L	3733724	2L_3733724_SNP [dm3] 2L_3733724_SNP [dm6]	T	A	2.393e^-4	1	INTRON CG10019
3L	7522616	3L_7522616_SNP [dm3] 3L_7529516_SNP [dm6]	C	T	2.393e^-4	1	INTRON lqf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1209322	3L_1209322_SNP [dm3] 3L_1209322_SNP [dm6]	A	G	2.399e^-4	1	INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	12906905	3R_12906905_SNP [dm3] 3R_17081183_SNP [dm6]	G	C	2.400e^-4	1	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13436180	X_13436180_SNP [dm3] X_13542147_SNP [dm6]	A	C	2.408e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8473692	2L_8473692_SNP [dm3] 2L_8473692_SNP [dm6]	C	T	2.412e^-4	1	INTRON d
2R	19046914	2R_19046914_SNP [dm3] 2R_23159391_SNP [dm6]	G	A	2.414e^-4	1	SYNONYMOUS_CODING CG9899
2L	7432677	2L_7432677_SNP [dm3] 2L_7432677_SNP [dm6]	T	C	2.423e^-4	1	INTRON CG5958
2R	9626455	2R_9626455_SNP [dm3] 2R_13738950_SNP [dm6]	T	A	2.424e^-4	1	INTRON fas
2L	6137774	2L_6137774_SNP [dm3] 2L_6137774_SNP [dm6]	T	A	2.424e^-4	1	INTERGENIC
X	14842275	X_14842275_SNP [dm3] X_14948242_SNP [dm6]	A	C	2.429e^-4	1	INTRON pdgy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18639588	X_18639588_SNP [dm3] X_18745555_SNP [dm6]	T	G	2.442e^-4	1	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
3R	25888160	3R_25888160_SNP [dm3] 3R_30062438_SNP [dm6]	A	T	2.455e^-4	1	UPSTREAM sima INTRON sima
3R	15592540	3R_15592540_SNP [dm3] 3R_19766818_SNP [dm6]	C	T	2.462e^-4	1	INTRON GluClalpha
3R	9582782	3R_9582782_SNP [dm3] 3R_13757060_SNP [dm6]	C	T	2.465e^-4	1	INTRON CG34383
3R	20984588	3R_20984588_SNP [dm3] 3R_25158866_SNP [dm6]	T	C	2.465e^-4	1	INTERGENIC
2R	10954344	2R_10954344_SNP [dm3] 2R_15066839_SNP [dm6]	T	A	2.465e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3273976	2L_3273976_SNP [dm3] 2L_3273976_SNP [dm6]	C	T	2.467e^-4	1	INTERGENIC
2L	9614949	2L_9614949_SNP [dm3] 2L_9614949_SNP [dm6]	T	C	2.473e^-4	1	INTRON Trx-2
X	11168364	X_11168364_SNP [dm3] X_11274331_SNP [dm6]	C	A	2.511e^-4	1	INTRON CG44422
3L	4664826	3L_4664826_SNP [dm3] 3L_4664826_SNP [dm6]	A	G	2.515e^-4	1	SYNONYMOUS_CODING axo
3R	26060516	3R_26060516_SNP [dm3] 3R_30234794_SNP [dm6]	T	C	2.516e^-4	1	INTERGENIC
3R	14092102	3R_14092102_SNP [dm3] 3R_18266380_SNP [dm6]	C	A	2.517e^-4	1	INTERGENIC
2R	8478539	2R_8478539_INS [dm3] 2R_12591034_INS [dm6]	T	TTAAATATGT	2.517e^-4	1	DOWNSTREAM CR30055 INTRON Sin3A EXON CR30055	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	9212500	3R_9212500_SNP [dm3] 3R_13386778_SNP [dm6]	G	C	2.525e^-4	1	SYNONYMOUS_CODING CG9799	TF binding site mE1_TFBS_cad
3R	24903699	3R_24903699_SNP [dm3] 3R_29077977_SNP [dm6]	A	G	2.533e^-4	1	INTRON CG11873
3L	1410100	3L_1410100_SNP [dm3] 3L_1410100_SNP [dm6]	G	A	2.539e^-4	1	UPSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18192010	3L_18192010_SNP [dm3] 3L_18198910_SNP [dm6]	A	G	2.552e^-4	1	INTERGENIC
X	21344731	X_21344731_SNP [dm3] X_21473704_SNP [dm6]	G	A	2.592e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18474073	3R_18474073_SNP [dm3] 3R_22648351_SNP [dm6]	A	G	2.600e^-4	1	INTRON CG45058
2R	5583326	2R_5583326_SNP [dm3] 2R_9695821_SNP [dm6]	G	A	2.609e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	3182902	X_3182902_SNP [dm3] X_3288869_SNP [dm6]	C	T	2.612e^-4	1	UPSTREAM dnc INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	9018191	2R_9018191_SNP [dm3] 2R_13130686_SNP [dm6]	G	A	2.627e^-4	1	SYNONYMOUS_CODING CG13326	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	17944011	2L_17944011_SNP [dm3] 2L_17944011_SNP [dm6]	A	T	2.632e^-4	1	INTERGENIC
3R	18459877	3R_18459877_SNP [dm3] 3R_22634155_SNP [dm6]	T	C	2.634e^-4	1	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9569492	3R_9569492_SNP [dm3] 3R_13743770_SNP [dm6]	A	G	2.641e^-4	1	INTRON CG34383	TF binding site mE1_TFBS_inv
3L	14972258	3L_14972258_DEL [dm3] 3L_14979158_DEL [dm6]	TCCTACA	T	2.642e^-4	1	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3L	17622931	3L_17622931_SNP [dm3] 3L_17629831_SNP [dm6]	G	A	2.642e^-4	1	NON_SYNONYMOUS_CODING CG7510
2L	11600884	2L_11600884_SNP [dm3] 2L_11600884_SNP [dm6]	G	T	2.644e^-4	1	INTRON kek2
3L	1475380	3L_1475380_SNP [dm3] 3L_1475380_SNP [dm6]	A	G	2.644e^-4	1	UPSTREAM Ptp61F DOWNSTREAM stet INTERGENIC
X	2897420	X_2897420_DEL [dm3] X_3003387_DEL [dm6]	CGCCTC	C	2.659e^-4	1	INTRON kirre
3L	14392925	3L_14392925_INS [dm3] 3L_14399825_INS [dm6]	A	AA	2.667e^-4	1	DOWNSTREAM CG3868 INTERGENIC
2R	12003687	2R_12003687_SNP [dm3] 2R_16116182_SNP [dm6]	C	A	2.675e^-4	1	NON_SYNONYMOUS_CODING Asph UTR_3_PRIME Asph UPSTREAM Jhedup
3R	18346958	3R_18346958_SNP [dm3] 3R_22521236_SNP [dm6]	C	T	2.676e^-4	1	SYNONYMOUS_CODING CG5346	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6830472	3L_6830472_SNP [dm3] 3L_6837372_SNP [dm6]	T	A	2.682e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16549891	2L_16549891_SNP [dm3] 2L_16549891_SNP [dm6]	T	A	2.686e^-4	1	UTR_5_PRIME CG5968 INTRON CG42389
2L	12644176	2L_12644176_SNP [dm3] 2L_12644176_SNP [dm6]	C	A	2.688e^-4	1	INTRON Ref2
2L	17399660	2L_17399660_DEL [dm3] 2L_17399660_DEL [dm6]	AATGAATAGAATGGCACGT...	A	2.688e^-4	1	INTRON CLIP-190
3L	1209326	3L_1209326_SNP [dm3] 3L_1209326_SNP [dm6]	T	A	2.703e^-4	1	INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18194746	2R_18194746_SNP [dm3] 2R_22307241_SNP [dm6]	A	C	2.712e^-4	1	INTRON wdp
2R	10030838	2R_10030838_SNP [dm3] 2R_14143333_SNP [dm6]	G	A	2.717e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	22091810	2L_22091810_SNP [dm3] 2L_22091810_SNP [dm6]	T	C	2.724e^-4	1	INTERGENIC	transposable element FlyBase
X	17653740	X_17653740_SNP [dm3] X_17759707_SNP [dm6]	G	T	2.724e^-4	1	INTERGENIC
3R	26268292	3R_26268292_SNP [dm3] 3R_30442570_SNP [dm6]	C	T	2.731e^-4	1	INTRON CG15537
2L	15616594	2L_15616594_SNP [dm3] 2L_15616594_SNP [dm6]	T	C	2.732e^-4	1	UPSTREAM CG11865 & 1 other INTERGENIC
2L	17947986	2L_17947986_SNP [dm3] 2L_17947986_SNP [dm6]	A	T	2.735e^-4	1	DOWNSTREAM CR44398 INTERGENIC
3R	25376001	3R_25376001_SNP [dm3] 3R_29550279_SNP [dm6]	T	C	2.739e^-4	1	INTERGENIC
2L	9588262	2L_9588262_SNP [dm3] 2L_9588262_SNP [dm6]	T	C	2.751e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4155577	2L_4155577_SNP [dm3] 2L_4155577_SNP [dm6]	T	C	2.751e^-4	1	INTERGENIC
3R	13535338	3R_13535338_SNP [dm3] 3R_17709616_SNP [dm6]	G	A	2.778e^-4	1	INTRON osa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14442119	2L_14442119_SNP [dm3] 2L_14442119_SNP [dm6]	A	G	2.792e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	23123835	3R_23123835_SNP [dm3] 3R_27298113_SNP [dm6]	G	A	2.795e^-4	1	SPLICE_SITE_REGION CG3339 SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo
3R	25403374	3R_25403374_SNP [dm3] 3R_29577652_SNP [dm6]	C	T	2.797e^-4	1	INTERGENIC
2R	10434905	2R_10434905_SNP [dm3] 2R_14547400_SNP [dm6]	A	T	2.799e^-4	1	INTRON ttv
2L	22161507	2L_22161507_SNP [dm3] 2L_22161507_SNP [dm6]	A	G	2.800e^-4	1	DOWNSTREAM CG42748 INTRON CG42748
2L	19080838	2L_19080838_SNP [dm3] 2L_19080838_SNP [dm6]	A	T	2.804e^-4	1	INTRON Lim3
3L	8151475	3L_8151475_SNP [dm3] 3L_8158375_SNP [dm6]	T	C	2.805e^-4	1	DOWNSTREAM CG43886 INTRON CG42445
3L	8151477	3L_8151477_SNP [dm3] 3L_8158377_SNP [dm6]	T	A	2.805e^-4	1	DOWNSTREAM CG43886 INTRON CG42445
3L	8151479	3L_8151479_SNP [dm3] 3L_8158379_SNP [dm6]	A	C	2.805e^-4	1	DOWNSTREAM CG43886 INTRON CG42445
X	19010012	X_19010012_SNP [dm3] X_19115979_SNP [dm6]	C	T	2.827e^-4	1	INTERGENIC
2L	9616283	2L_9616283_SNP [dm3] 2L_9616283_SNP [dm6]	C	T	2.840e^-4	1	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S DOWNSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl
3R	25888126	3R_25888126_SNP [dm3] 3R_30062404_SNP [dm6]	C	A	2.842e^-4	1	UPSTREAM sima INTRON sima
2R	2154180	2R_2154180_SNP [dm3] 2R_6266675_SNP [dm6]	G	A	2.847e^-4	1	INTERGENIC	transposable element FlyBase
X	20759590	X_20759590_SNP [dm3] X_20888563_SNP [dm6]	G	A	2.851e^-4	1	INTRON shakB
2R	16456378	2R_16456378_DEL [dm3] 2R_20568873_DEL [dm6]	ATC	T	2.882e^-4	1	INTRON qsm
2R	10943728	2R_10943728_SNP [dm3] 2R_15056223_SNP [dm6]	C	A	2.883e^-4	1	NON_SYNONYMOUS_CODING CG33467	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10943729	2R_10943729_SNP [dm3] 2R_15056224_SNP [dm6]	C	A	2.883e^-4	1	SYNONYMOUS_CODING CG33467	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17902590	2L_17902590_SNP [dm3] 2L_17902590_SNP [dm6]	T	G	2.886e^-4	1	DOWNSTREAM CR45333 EXON CR45332
3R	15293401	3R_15293401_SNP [dm3] 3R_19467679_SNP [dm6]	G	A	2.892e^-4	1	INTRON Dys
2L	8551975	2L_8551975_SNP [dm3] 2L_8551975_SNP [dm6]	A	G	2.893e^-4	1	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
2R	16670086	2R_16670086_SNP [dm3] 2R_20782581_SNP [dm6]	G	C	2.898e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
2L	14530936	2L_14530936_SNP [dm3] 2L_14530936_SNP [dm6]	T	C	2.902e^-4	1	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6113280	2R_6113280_SNP [dm3] 2R_10225775_SNP [dm6]	A	G	2.909e^-4	1	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5770067	2L_5770067_SNP [dm3] 2L_5770067_SNP [dm6]	C	T	2.913e^-4	1	SYNONYMOUS_CODING CG9171 EXON CR31912	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16143727	X_16143727_SNP [dm3] X_16249694_SNP [dm6]	C	T	2.918e^-4	1	INTERGENIC
2L	14371395	2L_14371395_SNP [dm3] 2L_14371395_SNP [dm6]	C	A	2.919e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3R	12907391	3R_12907391_SNP [dm3] 3R_17081669_SNP [dm6]	T	A	2.943e^-4	1	UPSTREAM kuk INTRON kuk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13019554	3L_13019554_SNP [dm3] 3L_13026454_SNP [dm6]	G	C	2.948e^-4	1	UPSTREAM Zmynd10 INTERGENIC	TF binding site mE1_TFBS_cad
3L	8151471	3L_8151471_MNP [dm3] 3L_8158371_MNP [dm6]	CCA	AGT	2.949e^-4	1	DOWNSTREAM CG43886 INTRON CG42445
2L	9616313	2L_9616313_DEL [dm3] 2L_9616313_DEL [dm6]	GCTAAT	A	2.950e^-4	1	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S DOWNSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl
2L	621803	2L_621803_SNP [dm3] 2L_621803_SNP [dm6]	C	T	2.960e^-4	1	UPSTREAM lectin-21Cb INTERGENIC
2L	15288300	2L_15288300_SNP [dm3] 2L_15288300_SNP [dm6]	T	A	2.967e^-4	1	INTERGENIC
2R	19364954	2R_19364954_SNP [dm3] 2R_23477431_SNP [dm6]	G	C	2.970e^-4	1	DOWNSTREAM CR43792 INTRON CG43795 EXON CR43793
3L	8568599	3L_8568599_SNP [dm3] 3L_8575499_SNP [dm6]	A	G	2.985e^-4	1	INTRON CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	9626452	2R_9626452_SNP [dm3] 2R_13738947_SNP [dm6]	G	A	2.995e^-4	1	INTRON fas
3L	6293398	3L_6293398_SNP [dm3] 3L_6300298_SNP [dm6]	C	G	3.012e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2072942	2L_2072942_DEL [dm3] 2L_2072942_DEL [dm6]	GA	G	3.024e^-4	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5702513	X_5702513_SNP [dm3] X_5808480_SNP [dm6]	T	A	3.033e^-4	1	UPSTREAM Prosbeta2R1 INTERGENIC
X	5702514	X_5702514_SNP [dm3] X_5808481_SNP [dm6]	G	A	3.033e^-4	1	UPSTREAM Prosbeta2R1 INTERGENIC
2R	20517791	2R_20517791_SNP [dm3] 2R_24630268_SNP [dm6]	G	A	3.034e^-4	1	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
2L	17353954	2L_17353954_INS [dm3] 2L_17353954_INS [dm6]	T	TGCGTAT	3.049e^-4	1	UPSTREAM CR44345 EXON CR43239
3L	11391195	3L_11391195_SNP [dm3] 3L_11398095_SNP [dm6]	A	G	3.055e^-4	1	DOWNSTREAM CG44362 INTERGENIC
3L	16644975	3L_16644975_SNP [dm3] 3L_16651875_SNP [dm6]	A	C	3.059e^-4	1	INTRON Baldspot
2R	11690224	2R_11690224_SNP [dm3] 2R_15802719_SNP [dm6]	T	C	3.062e^-4	1	INTRON Zasp52 & 1 other
2R	11696101	2R_11696101_SNP [dm3] 2R_15808596_SNP [dm6]	A	G	3.064e^-4	1	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9589387	2L_9589387_SNP [dm3] 2L_9589387_SNP [dm6]	A	T	3.065e^-4	1	UPSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs
2R	12677099	2R_12677099_SNP [dm3] 2R_16789594_SNP [dm6]	T	C	3.071e^-4	1	SYNONYMOUS_CODING CG5522
2L	17429505	2L_17429505_SNP [dm3] 2L_17429505_SNP [dm6]	T	C	3.076e^-4	1	UPSTREAM CR44409 INTRON Dif
2R	4115947	2R_4115947_SNP [dm3] 2R_8228442_SNP [dm6]	A	G	3.081e^-4	1	SYNONYMOUS_CODING CG34217 UPSTREAM CR44275 DOWNSTREAM dpn
2R	17425496	2R_17425496_SNP [dm3] 2R_21537991_SNP [dm6]	C	A	3.087e^-4	1	NON_SYNONYMOUS_CODING CG30287 DOWNSTREAM CG33226 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2R	13484129	2R_13484129_SNP [dm3] 2R_17596624_SNP [dm6]	G	A	3.089e^-4	1	SYNONYMOUS_CODING CG11423 INTRON lack	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3976760	2L_3976760_SNP [dm3] 2L_3976760_SNP [dm6]	T	C	3.091e^-4	1	INTRON fred
2L	17325417	2L_17325417_SNP [dm3] 2L_17325417_SNP [dm6]	G	A	3.099e^-4	1	INTERGENIC
2R	11452511	2R_11452511_SNP [dm3] 2R_15565006_SNP [dm6]	T	A	3.106e^-4	1	UTR_5_PRIME CG8195	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8467717	2L_8467717_SNP [dm3] 2L_8467717_SNP [dm6]	A	G	3.112e^-4	1	INTRON d	TF binding site mE1_TFBS_Kr
2R	17425490	2R_17425490_SNP [dm3] 2R_21537985_SNP [dm6]	A	G	3.127e^-4	1	NON_SYNONYMOUS_CODING CG30287 DOWNSTREAM CG33226 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2L	14498345	2L_14498345_SNP [dm3] 2L_14498345_SNP [dm6]	G	A	3.128e^-4	1	UPSTREAM CR45303 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11335217	3L_11335217_SNP [dm3] 3L_11342117_SNP [dm6]	C	G	3.142e^-4	1	EXON CR45250	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	6944180	3L_6944180_SNP [dm3] 3L_6951080_SNP [dm6]	A	G	3.145e^-4	1	SYNONYMOUS_CODING CG10077 DOWNSTREAM CG10077	TF binding site mE1_TFBS_inv
3R	14680693	3R_14680693_SNP [dm3] 3R_18854971_SNP [dm6]	T	A	3.146e^-4	1	INTERGENIC
3R	18912670	3R_18912670_SNP [dm3] 3R_23086948_SNP [dm6]	A	G	3.150e^-4	1	INTRON CG13830
3R	12666194	3R_12666194_SNP [dm3] 3R_16840472_SNP [dm6]	T	C	3.151e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10836393	2R_10836393_SNP [dm3] 2R_14948888_SNP [dm6]	G	T	3.151e^-4	1	INTRON aPKC	TF binding site mE1_TFBS_cad
3L	18275053	3L_18275053_SNP [dm3] 3L_18281953_SNP [dm6]	A	G	3.162e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16150276	X_16150276_INS [dm3] X_16256243_INS [dm6]	G	GA	3.165e^-4	1	INTERGENIC
2L	7432709	2L_7432709_SNP [dm3] 2L_7432709_SNP [dm6]	A	T	3.183e^-4	1	INTRON CG5958
2R	10232164	2R_10232164_SNP [dm3] 2R_14344659_SNP [dm6]	T	C	3.186e^-4	1	INTRON Shroom
3R	9570165	3R_9570165_SNP [dm3] 3R_13744443_SNP [dm6]	T	A	3.186e^-4	1	INTRON CG34383
3L	4397290	3L_4397290_MNP [dm3] 3L_4397290_MNP [dm6]	CAA	AGT	3.188e^-4	1	INTRON slow
3L	6683635	3L_6683635_SNP [dm3] 3L_6690535_SNP [dm6]	T	G	3.190e^-4	1	NON_SYNONYMOUS_CODING SP1173
2R	16253788	2R_16253788_SNP [dm3] 2R_20366283_SNP [dm6]	A	T	3.194e^-4	1	INTERGENIC
3R	7333179	3R_7333179_SNP [dm3] 3R_11507457_SNP [dm6]	A	G	3.216e^-4	1	INTERGENIC
3L	10722392	3L_10722392_SNP [dm3] 3L_10729292_SNP [dm6]	G	C	3.218e^-4	1	INTERGENIC
3L	13023571	3L_13023571_SNP [dm3] 3L_13030471_SNP [dm6]	T	C	3.222e^-4	1	INTRON CG17672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14164491	3L_14164491_SNP [dm3] 3L_14171391_SNP [dm6]	A	T	3.281e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	11171528	2R_11171528_SNP [dm3] 2R_15284023_SNP [dm6]	C	T	3.281e^-4	1	INTRON Trpm
2L	634416	2L_634416_SNP [dm3] 2L_634416_SNP [dm6]	A	C	3.302e^-4	1	INTERGENIC
3R	26305721	3R_26305721_SNP [dm3] 3R_30479999_SNP [dm6]	A	T	3.308e^-4	1	INTRON PH4alphaEFB
X	3183134	X_3183134_SNP [dm3] X_3289101_SNP [dm6]	A	G	3.311e^-4	1	UPSTREAM dnc INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	6429827	X_6429827_SNP [dm3] X_6535794_SNP [dm6]	T	C	3.317e^-4	1	SYNONYMOUS_CODING dx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3356813	2R_3356813_SNP [dm3] 2R_7469308_SNP [dm6]	G	A	3.317e^-4	1	INTRON Aldh-III
3L	10968098	3L_10968098_SNP [dm3] 3L_10974998_SNP [dm6]	G	A	3.324e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9589529	2L_9589529_SNP [dm3] 2L_9589529_SNP [dm6]	G	A	3.324e^-4	1	UTR_5_PRIME CG3841 UPSTREAM CG3841	regulatory region REDfly_CRMs
2L	11601591	2L_11601591_SNP [dm3] 2L_11601591_SNP [dm6]	G	A	3.328e^-4	1	INTRON kek2
X	17070296	X_17070296_DEL [dm3] X_17176263_DEL [dm6]	TAAGAA	T	3.344e^-4	1	UTR_5_PRIME baz INTRON baz	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_zfh1
3R	24448965	3R_24448965_SNP [dm3] 3R_28623243_SNP [dm6]	G	T	3.358e^-4	1	INTRON CG10011
3L	8209414	3L_8209414_SNP [dm3] 3L_8216314_SNP [dm6]	C	A	3.359e^-4	1	DOWNSTREAM CG8012 INTERGENIC
2L	10170658	2L_10170658_SNP [dm3] 2L_10170658_SNP [dm6]	C	A	3.361e^-4	1	INTRON CG44153
2R	16312873	2R_16312873_SNP [dm3] 2R_20425368_SNP [dm6]	C	T	3.364e^-4	1	INTRON CG12484
3L	6683636	3L_6683636_SNP [dm3] 3L_6690536_SNP [dm6]	T	G	3.368e^-4	1	SYNONYMOUS_CODING SP1173
2R	11171527	2R_11171527_SNP [dm3] 2R_15284022_SNP [dm6]	C	A	3.379e^-4	1	INTRON Trpm
3L	16748854	3L_16748854_SNP [dm3] 3L_16755754_SNP [dm6]	T	C	3.386e^-4	1	DOWNSTREAM CG42852 INTERGENIC
3L	12480583	3L_12480583_SNP [dm3] 3L_12487483_SNP [dm6]	C	T	3.389e^-4	1	INTRON CG10660	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	16667884	2R_16667884_SNP [dm3] 2R_20780379_SNP [dm6]	A	G	3.398e^-4	1	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9299688	3L_9299688_SNP [dm3] 3L_9306588_SNP [dm6]	T	C	3.405e^-4	1	INTERGENIC
3R	15281196	3R_15281196_SNP [dm3] 3R_19455474_SNP [dm6]	A	T	3.412e^-4	1	INTRON CG31221
3R	11455829	3R_11455829_SNP [dm3] 3R_15630107_SNP [dm6]	A	G	3.414e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	13535676	3R_13535676_SNP [dm3] 3R_17709954_SNP [dm6]	T	C	3.419e^-4	1	INTRON osa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16545614	3R_16545614_SNP [dm3] 3R_20719892_SNP [dm6]	G	C	3.420e^-4	1	INTERGENIC
2R	4115938	2R_4115938_SNP [dm3] 2R_8228433_SNP [dm6]	C	T	3.421e^-4	1	SYNONYMOUS_CODING CG34217 UPSTREAM CR44275 DOWNSTREAM dpn
2L	13992922	2L_13992922_SNP [dm3] 2L_13992922_SNP [dm6]	G	T	3.422e^-4	1	INTRON rk
X	17433491	X_17433491_SNP [dm3] X_17539458_SNP [dm6]	A	G	3.423e^-4	1	INTRON CG43658
3L	12250454	3L_12250454_SNP [dm3] 3L_12257354_SNP [dm6]	T	C	3.436e^-4	1	INTRON app
3L	8580078	3L_8580078_SNP [dm3] 3L_8586978_SNP [dm6]	A	T	3.446e^-4	1	INTRON CG43078	TF binding site mE1_TFBS_chinmo
2R	19717163	2R_19717163_SNP [dm3] 2R_23829640_SNP [dm6]	A	C	3.457e^-4	1	INTRON CG5549
2R	11437847	2R_11437847_SNP [dm3] 2R_15550342_SNP [dm6]	G	A	3.459e^-4	1	UPSTREAM CG8192 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	14092211	3R_14092211_SNP [dm3] 3R_18266489_SNP [dm6]	A	T	3.492e^-4	1	INTERGENIC
X	8191648	X_8191648_SNP [dm3] X_8297615_SNP [dm6]	T	G	3.496e^-4	1	INTRON nAChRalpha3
X	8191620	X_8191620_SNP [dm3] X_8297587_SNP [dm6]	T	C	3.503e^-4	1	INTRON nAChRalpha3
3L	11620641	3L_11620641_SNP [dm3] 3L_11627541_SNP [dm6]	T	C	3.513e^-4	1	SYNONYMOUS_CODING PCID2 UPSTREAM CG18815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16462913	2R_16462913_SNP [dm3] 2R_20575408_SNP [dm6]	A	G	3.529e^-4	1	INTRON qsm
3R	11017551	3R_11017551_SNP [dm3] 3R_15191829_SNP [dm6]	C	T	3.529e^-4	1	SYNONYMOUS_CODING CG6752 DOWNSTREAM Gyc88E & 1 other
3R	18464458	3R_18464458_SNP [dm3] 3R_22638736_SNP [dm6]	G	A	3.530e^-4	1	SYNONYMOUS_CODING loco	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	3442717	2R_3442717_SNP [dm3] 2R_7555212_SNP [dm6]	C	A	3.538e^-4	1	NON_SYNONYMOUS_CODING Corin
3L	2576342	3L_2576342_DEL [dm3] 3L_2576342_DEL [dm6]	ACATTCG	A	3.542e^-4	1	INTRON msn
3L	16748857	3L_16748857_SNP [dm3] 3L_16755757_SNP [dm6]	T	A	3.545e^-4	1	DOWNSTREAM CG42852 INTERGENIC
X	10873119	X_10873119_SNP [dm3] X_10979086_SNP [dm6]	C	T	3.555e^-4	1	INTRON CG42339
2R	20416645	2R_20416645_SNP [dm3] 2R_24529122_SNP [dm6]	C	G	3.571e^-4	1	NON_SYNONYMOUS_CODING Brca2 DOWNSTREAM Ir60e
2L	9587677	2L_9587677_SNP [dm3] 2L_9587677_SNP [dm6]	C	T	3.583e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5776971	2L_5776971_SNP [dm3] 2L_5776971_SNP [dm6]	A	G	3.584e^-4	1	INTRON CG9171
2L	12258078	2L_12258078_SNP [dm3] 2L_12258078_SNP [dm6]	T	C	3.585e^-4	1	INTRON aret
3R	12666138	3R_12666138_SNP [dm3] 3R_16840416_SNP [dm6]	C	G	3.588e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	7155636	2R_7155636_SNP [dm3] 2R_11268131_SNP [dm6]	C	A	3.624e^-4	1	SYNONYMOUS_CODING Cpr47Ef
X	17653736	X_17653736_DEL [dm3] X_17759703_DEL [dm6]	TTT	T	3.632e^-4	1	INTERGENIC
3R	26045463	3R_26045463_SNP [dm3] 3R_30219741_SNP [dm6]	G	A	3.633e^-4	1	INTERGENIC
2L	634401	2L_634401_SNP [dm3] 2L_634401_SNP [dm6]	G	C	3.647e^-4	1	INTERGENIC
2L	14366899	2L_14366899_SNP [dm3] 2L_14366899_SNP [dm6]	T	C	3.652e^-4	1	DOWNSTREAM spel1 INTERGENIC
3L	16183821	3L_16183821_SNP [dm3] 3L_16190721_SNP [dm6]	A	C	3.652e^-4	1	INTERGENIC
2R	2119966	2R_2119966_DEL [dm3] 2R_6232461_DEL [dm6]	TCAATGTTT	T	3.659e^-4	1	INTRON bin3
3R	11528524	3R_11528524_SNP [dm3] 3R_15702802_SNP [dm6]	A	C	3.660e^-4	1	INTERGENIC
2L	22075664	2L_22075664_SNP [dm3] 2L_22075664_SNP [dm6]	G	A	3.661e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2865802	2L_2865802_SNP [dm3] 2L_2865802_SNP [dm6]	T	C	3.662e^-4	1	INTRON CG2991
2R	11572821	2R_11572821_SNP [dm3] 2R_15685316_SNP [dm6]	A	G	3.669e^-4	1	SYNONYMOUS_CODING CG30082 UPSTREAM CR43429 INTRON Ranbp11	TF binding site mE1_TFBS_cad
3R	9575165	3R_9575165_SNP [dm3] 3R_13749443_SNP [dm6]	G	A	3.671e^-4	1	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14090542	2R_14090542_SNP [dm3] 2R_18203037_SNP [dm6]	G	A	3.673e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7333097	3R_7333097_SNP [dm3] 3R_11507375_SNP [dm6]	G	A	3.679e^-4	1	INTERGENIC
2R	8717045	2R_8717045_SNP [dm3] 2R_12829540_SNP [dm6]	G	C	3.680e^-4	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	16667914	2R_16667914_SNP [dm3] 2R_20780409_SNP [dm6]	G	A	3.683e^-4	1	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18817830	X_18817830_SNP [dm3] X_18923797_SNP [dm6]	G	C	3.687e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18981210	2R_18981210_SNP [dm3] 2R_23093687_SNP [dm6]	C	T	3.705e^-4	1	INTRON CG9876
2L	9616329	2L_9616329_SNP [dm3] 2L_9616329_SNP [dm6]	C	T	3.707e^-4	1	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S DOWNSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl
X	6895715	X_6895715_SNP [dm3] X_7001682_SNP [dm6]	A	G	3.710e^-4	1	UTR_3_PRIME Inx2 INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5584798	2R_5584798_SNP [dm3] 2R_9697293_SNP [dm6]	G	A	3.712e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	16933186	3R_16933186_SNP [dm3] 3R_21107464_SNP [dm6]	G	C	3.726e^-4	1	SYNONYMOUS_CODING Sec15 UPSTREAM rtet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14366823	2L_14366823_SNP [dm3] 2L_14366823_SNP [dm6]	T	C	3.737e^-4	1	UTR_3_PRIME spel1	TF binding site mE1_TFBS_cad
2R	16799232	2R_16799232_INS [dm3] 2R_20911727_INS [dm6]	G	GG	3.737e^-4	1	DOWNSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10748048	2L_10748048_SNP [dm3] 2L_10748048_SNP [dm6]	T	C	3.749e^-4	1	INTRON CG17124	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6219289	3R_6219289_SNP [dm3] 3R_10393567_SNP [dm6]	A	G	3.758e^-4	1	INTRON cwo
3R	26062857	3R_26062857_SNP [dm3] 3R_30237135_SNP [dm6]	C	A	3.772e^-4	1	UTR_3_PRIME CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15371058	2L_15371058_SNP [dm3] 2L_15371058_SNP [dm6]	C	T	3.772e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	3.774e^-4	1	INTRON sick
3L	11408631	3L_11408631_SNP [dm3] 3L_11415531_SNP [dm6]	A	G	3.783e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9558621	3R_9558621_SNP [dm3] 3R_13732899_SNP [dm6]	A	T	3.786e^-4	1	INTRON CG34383	TF binding site BDTNP1_TFBS_dl
2R	10353395	2R_10353395_SNP [dm3] 2R_14465890_SNP [dm6]	A	T	3.788e^-4	1	DOWNSTREAM Oaz INTERGENIC
3L	10722582	3L_10722582_SNP [dm3] 3L_10729482_SNP [dm6]	C	T	3.789e^-4	1	INTERGENIC
3R	24903072	3R_24903072_SNP [dm3] 3R_29077350_SNP [dm6]	T	A	3.790e^-4	1	INTRON CG11873
3R	25162457	3R_25162457_SNP [dm3] 3R_29336735_SNP [dm6]	G	T	3.810e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21705868	3R_21705868_SNP [dm3] 3R_25880146_SNP [dm6]	C	G	3.811e^-4	1	INTRON Tsp96F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10030846	2R_10030846_INS [dm3] 2R_14143341_INS [dm6]	A	ATTTTACAAGGTGACATCTT...	3.814e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	13278011	2L_13278011_SNP [dm3] 2L_13278011_SNP [dm6]	T	C	3.815e^-4	1	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9618054	2L_9618054_SNP [dm3] 2L_9618054_SNP [dm6]	T	C	3.817e^-4	1	INTRON GlcAT-S
3R	25403277	3R_25403277_SNP [dm3] 3R_29577555_SNP [dm6]	G	A	3.830e^-4	1	INTERGENIC
3L	21064361	3L_21064361_SNP [dm3] 3L_21071261_SNP [dm6]	A	T	3.832e^-4	1	INTRON siz
2R	16548347	2R_16548347_SNP [dm3] 2R_20660842_SNP [dm6]	A	T	3.833e^-4	1	UTR_3_PRIME Lrt UPSTREAM CG13437
2R	11452516	2R_11452516_SNP [dm3] 2R_15565011_SNP [dm6]	C	A	3.851e^-4	1	UTR_5_PRIME CG8195	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	789151	3R_789151_SNP [dm3] 3R_4963429_SNP [dm6]	T	C	3.865e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	22096369	2L_22096369_SNP [dm3] 2L_22096369_SNP [dm6]	C	T	3.873e^-4	1	INTERGENIC
3L	5164928	3L_5164928_SNP [dm3] 3L_5171828_SNP [dm6]	A	G	3.875e^-4	1	INTRON shep
3L	8324741	3L_8324741_SNP [dm3] 3L_8331641_SNP [dm6]	G	T	3.876e^-4	1	INTERGENIC
2R	19605910	2R_19605910_SNP [dm3] 2R_23718387_SNP [dm6]	G	T	3.879e^-4	1	DOWNSTREAM CG18128 INTRON Sesn	TF binding site mE1_TFBS_chinmo
2R	11890398	2R_11890398_SNP [dm3] 2R_16002893_SNP [dm6]	T	C	3.896e^-4	1	SYNONYMOUS_CODING CG8370	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13873410	2L_13873410_SNP [dm3] 2L_13873410_SNP [dm6]	G	C	3.898e^-4	1	INTRON CenG1A
3L	13139373	3L_13139373_SNP [dm3] 3L_13146273_SNP [dm6]	G	T	3.904e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6307529	3L_6307529_SNP [dm3] 3L_6314429_SNP [dm6]	G	T	3.910e^-4	1	INTERGENIC
3L	14972252	3L_14972252_SNP [dm3] 3L_14979152_SNP [dm6]	A	G	3.924e^-4	1	UPSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2L	12730097	2L_12730097_SNP [dm3] 2L_12730097_SNP [dm6]	G	T	3.924e^-4	1	SYNONYMOUS_CODING MRP INTRON MRP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9616255	2L_9616255_SNP [dm3] 2L_9616255_SNP [dm6]	G	T	3.925e^-4	1	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S DOWNSTREAM Trx-2	TF binding site BDTNP1_TFBS_dl
3L	9915233	3L_9915233_SNP [dm3] 3L_9922133_SNP [dm6]	C	T	3.926e^-4	1	INTRON CG34356
3R	15618509	3R_15618509_SNP [dm3] 3R_19792787_SNP [dm6]	T	A	3.937e^-4	1	INTERGENIC
X	19430043	X_19430043_INS [dm3] X_19536010_INS [dm6]	G	GACG	3.940e^-4	1	INTRON CG32532
2L	12800064	2L_12800064_SNP [dm3] 2L_12800064_SNP [dm6]	A	G	3.951e^-4	1	INTERGENIC
2L	8467602	2L_8467602_SNP [dm3] 2L_8467602_SNP [dm6]	T	G	3.951e^-4	1	DOWNSTREAM fu2 INTRON d	TF binding site mE1_TFBS_Kr
3L	14392545	3L_14392545_INS [dm3] 3L_14399445_INS [dm6]	G	GG	3.955e^-4	1	INTERGENIC
3R	14224642	3R_14224642_SNP [dm3] 3R_18398920_SNP [dm6]	G	A	3.956e^-4	1	UPSTREAM CG44009 INTRON Vha100-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13774412	2R_13774412_SNP [dm3] 2R_17886907_SNP [dm6]	T	A	3.972e^-4	1	DOWNSTREAM PPO1 INTRON Elk	regulatory region REDfly_CRMs
2L	12323191	2L_12323191_SNP [dm3] 2L_12323191_SNP [dm6]	G	C	3.980e^-4	1	INTERGENIC
2L	11981780	2L_11981780_SNP [dm3] 2L_11981780_SNP [dm6]	T	A	4.004e^-4	1	INTRON CG16965
2R	13484087	2R_13484087_SNP [dm3] 2R_17596582_SNP [dm6]	C	G	4.015e^-4	1	SYNONYMOUS_CODING CG11423 INTRON lack	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11521273	3L_11521273_SNP [dm3] 3L_11528173_SNP [dm6]	T	C	4.026e^-4	1	INTRON Mob2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6683627	3L_6683627_SNP [dm3] 3L_6690527_SNP [dm6]	T	C	4.030e^-4	1	SYNONYMOUS_CODING SP1173
3R	19566249	3R_19566249_SNP [dm3] 3R_23740527_SNP [dm6]	G	A	4.040e^-4	1	INTRON Hmgcr
2L	5568620	2L_5568620_SNP [dm3] 2L_5568620_SNP [dm6]	G	A	4.043e^-4	1	INTERGENIC
3R	15292136	3R_15292136_SNP [dm3] 3R_19466414_SNP [dm6]	C	T	4.054e^-4	1	INTRON Dys
3R	17683371	3R_17683371_SNP [dm3] 3R_21857649_SNP [dm6]	A	G	4.058e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	2142304	2R_2142304_SNP [dm3] 2R_6254799_SNP [dm6]	A	G	4.063e^-4	1	INTRON Pld	transposable element FlyBase
X	14471032	X_14471032_SNP [dm3] X_14576999_SNP [dm6]	A	G	4.069e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16933150	3R_16933150_SNP [dm3] 3R_21107428_SNP [dm6]	T	C	4.079e^-4	1	SYNONYMOUS_CODING Sec15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5770400	2L_5770400_SNP [dm3] 2L_5770400_SNP [dm6]	C	T	4.106e^-4	1	SYNONYMOUS_CODING CG9171 EXON CR31912	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12795660	2L_12795660_DEL [dm3] 2L_12795660_DEL [dm6]	ATACC	A	4.120e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9626460	2R_9626460_SNP [dm3] 2R_13738955_SNP [dm6]	A	G	4.133e^-4	1	INTRON fas
2R	2142382	2R_2142382_SNP [dm3] 2R_6254877_SNP [dm6]	G	A	4.133e^-4	1	SYNONYMOUS_CODING Pld	transposable element FlyBase
2R	4059341	2R_4059341_SNP [dm3] 2R_8171836_SNP [dm6]	C	T	4.149e^-4	1	NON_SYNONYMOUS_CODING Mlh1 DOWNSTREAM CG14757	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9285767	2L_9285767_SNP [dm3] 2L_9285767_SNP [dm6]	T	C	4.149e^-4	1	INTRON Ggamma30A
2R	13601417	2R_13601417_SNP [dm3] 2R_17713912_SNP [dm6]	C	T	4.153e^-4	1	INTRON CG6424
X	14090973	X_14090973_SNP [dm3] X_14196940_SNP [dm6]	A	G	4.155e^-4	1	NON_SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	24880418	3R_24880418_SNP [dm3] 3R_29054696_SNP [dm6]	T	A	4.163e^-4	1	DOWNSTREAM CG11842 INTRON CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5568632	2L_5568632_SNP [dm3] 2L_5568632_SNP [dm6]	G	A	4.172e^-4	1	INTERGENIC
3L	12779776	3L_12779776_SNP [dm3] 3L_12786676_SNP [dm6]	C	T	4.172e^-4	1	SYNONYMOUS_CODING Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19351804	2R_19351804_SNP [dm3] 2R_23464281_SNP [dm6]	C	T	4.175e^-4	1	INTRON CG43795
3L	11620611	3L_11620611_SNP [dm3] 3L_11627511_SNP [dm6]	C	T	4.179e^-4	1	SYNONYMOUS_CODING PCID2 UPSTREAM CG18815	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	14238693	2L_14238693_SNP [dm3] 2L_14238693_SNP [dm6]	C	G	4.184e^-4	1	INTERGENIC
3L	2576351	3L_2576351_SNP [dm3] 3L_2576351_SNP [dm6]	C	T	4.186e^-4	1	INTRON msn
2R	6741193	2R_6741193_SNP [dm3] 2R_10853688_SNP [dm6]	T	G	4.188e^-4	1	UTR_5_PRIME CG30015 INTRON CG30015 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	3874931	2L_3874931_SNP [dm3] 2L_3874931_SNP [dm6]	G	T	4.192e^-4	1	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
3R	25511970	3R_25511970_SNP [dm3] 3R_29686248_SNP [dm6]	G	C	4.192e^-4	1	DOWNSTREAM Gycalpha99B INTRON Obp99c	TF binding site mE1_TFBS_cad
X	18639590	X_18639590_SNP [dm3] X_18745557_SNP [dm6]	G	T	4.195e^-4	1	DOWNSTREAM CG12609 INTERGENIC	TF binding site mE1_TFBS_inv
3R	18435694	3R_18435694_SNP [dm3] 3R_22609972_SNP [dm6]	C	T	4.197e^-4	1	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9589625	2L_9589625_SNP [dm3] 2L_9589625_SNP [dm6]	T	C	4.201e^-4	1	UPSTREAM CG3841 INTRON CG3841	regulatory region REDfly_CRMs
3L	10011297	3L_10011297_SNP [dm3] 3L_10018197_SNP [dm6]	T	C	4.206e^-4	1	INTRON dpr6
2L	2525470	2L_2525470_SNP [dm3] 2L_2525470_SNP [dm6]	G	A	4.209e^-4	1	INTERGENIC
X	16150286	X_16150286_SNP [dm3] X_16256253_SNP [dm6]	T	G	4.215e^-4	1	INTERGENIC
3L	9059371	3L_9059371_SNP [dm3] 3L_9066271_SNP [dm6]	G	T	4.218e^-4	1	UPSTREAM Argk DOWNSTREAM CG4911 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	9059372	3L_9059372_SNP [dm3] 3L_9066272_SNP [dm6]	T	A	4.218e^-4	1	UPSTREAM Argk DOWNSTREAM CG4911 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	11587516	X_11587516_SNP [dm3] X_11693483_SNP [dm6]	G	A	4.224e^-4	1	UTR_3_PRIME bif INTRON bif
X	1998713	X_1998713_SNP [dm3] X_2104680_SNP [dm6]	C	T	4.224e^-4	1	INTRON csw
2R	7766402	2R_7766402_SNP [dm3] 2R_11878897_SNP [dm6]	G	A	4.224e^-4	1	NON_SYNONYMOUS_CODING CG13185
2L	9505089	2L_9505089_SNP [dm3] 2L_9505089_SNP [dm6]	G	A	4.258e^-4	1	INTRON CG33298
2L	21786581	2L_21786581_SNP [dm3] 2L_21786581_SNP [dm6]	A	T	4.258e^-4	1	INTRON CG31612	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2795066	2R_2795066_SNP [dm3] 2R_6907561_SNP [dm6]	C	A	4.261e^-4	1	INTRON CG30158	TF binding site mE1_TFBS_chinmo
X	1266448	X_1266448_SNP [dm3] X_1372415_SNP [dm6]	G	A	4.267e^-4	1	INTRON ssx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14238691	2L_14238691_SNP [dm3] 2L_14238691_SNP [dm6]	A	C	4.296e^-4	1	INTERGENIC
3L	12201776	3L_12201776_SNP [dm3] 3L_12208676_SNP [dm6]	G	A	4.308e^-4	1	DOWNSTREAM app INTRON app
3L	6817947	3L_6817947_SNP [dm3] 3L_6824847_SNP [dm6]	T	C	4.334e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	17455467	X_17455467_SNP [dm3] X_17561434_SNP [dm6]	G	T	4.335e^-4	1	UPSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	11593157	3R_11593157_SNP [dm3] 3R_15767435_SNP [dm6]	A	G	4.351e^-4	1	UTR_5_PRIME CG5623
2R	10584126	2R_10584126_SNP [dm3] 2R_14696621_SNP [dm6]	G	C	4.352e^-4	1	INTRON mspo
3R	26678671	3R_26678671_SNP [dm3] 3R_30852949_SNP [dm6]	G	A	4.358e^-4	1	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	16667900	2R_16667900_DEL [dm3] 2R_20780395_DEL [dm6]	GGAAT	G	4.363e^-4	1	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20914123	3L_20914123_SNP [dm3] 3L_20921023_SNP [dm6]	A	G	4.369e^-4	1	DOWNSTREAM CR43929 EXON CR45734	TF binding site BDTNP1_TFBS_twi
2L	4156275	2L_4156275_SNP [dm3] 2L_4156275_SNP [dm6]	G	A	4.369e^-4	1	INTERGENIC
2R	17763450	2R_17763450_SNP [dm3] 2R_21875945_SNP [dm6]	T	C	4.376e^-4	1	INTRON Fili
2L	4320476	2L_4320476_SNP [dm3] 2L_4320476_SNP [dm6]	C	T	4.376e^-4	1	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14536179	2R_14536179_SNP [dm3] 2R_18648674_SNP [dm6]	T	A	4.379e^-4	1	INTRON SP2637
3R	18763068	3R_18763068_SNP [dm3] 3R_22937346_SNP [dm6]	A	G	4.385e^-4	1	INTRON klg
X	12941212	X_12941212_SNP [dm3] X_13047179_SNP [dm6]	G	C	4.392e^-4	1	INTRON rad
2L	20488968	2L_20488968_SNP [dm3] 2L_20488968_SNP [dm6]	A	G	4.399e^-4	1	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14082718	2L_14082718_SNP [dm3] 2L_14082718_SNP [dm6]	A	T	4.401e^-4	1	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
3L	14868690	3L_14868690_SNP [dm3] 3L_14875590_SNP [dm6]	T	G	4.402e^-4	1	INTRON CG17839
2R	223036	2R_223036_INS [dm3] 2R_4335531_INS [dm6]	G	GCTAG	4.404e^-4	1	INTRON Gprk1
X	11001852	X_11001852_SNP [dm3] X_11107819_SNP [dm6]	T	G	4.407e^-4	1	NON_SYNONYMOUS_CODING CG42249 UPSTREAM Hsp60 DOWNSTREAM CG42249
2L	21749694	2L_21749694_DEL [dm3] 2L_21749694_DEL [dm6]	AATG	A	4.407e^-4	1	INTRON step	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8568633	3L_8568633_SNP [dm3] 3L_8575533_SNP [dm6]	T	G	4.413e^-4	1	INTRON CG6638	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	17653841	X_17653841_SNP [dm3] X_17759808_SNP [dm6]	G	A	4.413e^-4	1	INTERGENIC
3L	18296731	3L_18296731_SNP [dm3] 3L_18303631_SNP [dm6]	C	T	4.414e^-4	1	UTR_3_PRIME grim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	16933730	3R_16933730_SNP [dm3] 3R_21108008_SNP [dm6]	T	A	4.414e^-4	1	UPSTREAM rtet & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	5390975	X_5390975_DEL [dm3] X_5496942_DEL [dm6]	CAC	C	4.424e^-4	1	UPSTREAM frma INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14715885	2L_14715885_SNP [dm3] 2L_14715885_SNP [dm6]	G	A	4.435e^-4	1	INTERGENIC
3L	10722363	3L_10722363_INS [dm3] 3L_10729263_INS [dm6]	T	TAT	4.463e^-4	1	INTERGENIC
3R	12686645	3R_12686645_SNP [dm3] 3R_16860923_SNP [dm6]	A	G	4.488e^-4	1	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	3182529	X_3182529_SNP [dm3] X_3288496_SNP [dm6]	G	T	4.494e^-4	1	UPSTREAM dnc INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21911778	2L_21911778_SNP [dm3] 2L_21911778_SNP [dm6]	G	A	4.497e^-4	1	INTERGENIC	transposable element FlyBase
3L	16479452	3L_16479452_SNP [dm3] 3L_16486352_SNP [dm6]	G	A	4.510e^-4	1	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	20062147	2R_20062147_SNP [dm3] 2R_24174624_SNP [dm6]	G	A	4.511e^-4	1	UPSTREAM Nop60B & 1 other DOWNSTREAM CG3328 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6867556	2L_6867556_SNP [dm3] 2L_6867556_SNP [dm6]	A	T	4.512e^-4	1	INTRON Nha1	TF binding site mE1_TFBS_HSA
2R	7453624	2R_7453624_SNP [dm3] 2R_11566119_SNP [dm6]	G	A	4.516e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
X	18242141	X_18242141_SNP [dm3] X_18348108_SNP [dm6]	T	C	4.525e^-4	1	INTRON CG6123
2L	2165002	2L_2165002_SNP [dm3] 2L_2165002_SNP [dm6]	C	A	4.541e^-4	1	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	12795673	2L_12795673_SNP [dm3] 2L_12795673_SNP [dm6]	G	T	4.542e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15618368	3R_15618368_SNP [dm3] 3R_19792646_SNP [dm6]	G	C	4.556e^-4	1	INTERGENIC
3R	11520914	3R_11520914_SNP [dm3] 3R_15695192_SNP [dm6]	A	C	4.562e^-4	1	UPSTREAM CG5399 DOWNSTREAM CG31446 INTERGENIC
3L	2694707	3L_2694707_SNP [dm3] 3L_2694707_SNP [dm6]	G	T	4.579e^-4	1	INTRON Fife
2R	9638666	2R_9638666_SNP [dm3] 2R_13751161_SNP [dm6]	T	C	4.584e^-4	1	INTERGENIC
3R	19467260	3R_19467260_SNP [dm3] 3R_23641538_SNP [dm6]	G	A	4.607e^-4	1	INTRON CG31145
2L	10170675	2L_10170675_SNP [dm3] 2L_10170675_SNP [dm6]	A	T	4.611e^-4	1	INTRON CG44153
2L	9319081	2L_9319081_SNP [dm3] 2L_9319081_SNP [dm6]	G	C	4.613e^-4	1	INTERGENIC
3R	15421130	3R_15421130_SNP [dm3] 3R_19595408_SNP [dm6]	T	A	4.614e^-4	1	UTR_3_PRIME Dys DOWNSTREAM Dys
2R	19528362	2R_19528362_SNP [dm3] 2R_23640839_SNP [dm6]	G	A	4.638e^-4	1	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	14366878	2L_14366878_SNP [dm3] 2L_14366878_SNP [dm6]	G	C	4.644e^-4	1	DOWNSTREAM spel1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	14680486	3R_14680486_SNP [dm3] 3R_18854764_SNP [dm6]	A	C	4.654e^-4	1	INTERGENIC
2L	10512734	2L_10512734_SNP [dm3] 2L_10512734_SNP [dm6]	C	A	4.682e^-4	1	SYNONYMOUS_CODING Fatp UTR_3_PRIME CG45083	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17674893	2R_17674893_INS [dm3] 2R_21787388_INS [dm6]	T	TAGACATTT	4.683e^-4	1	INTERGENIC
3L	17816835	3L_17816835_SNP [dm3] 3L_17823735_SNP [dm6]	G	C	4.684e^-4	1	UPSTREAM Ir75c INTRON Grd
2L	7432892	2L_7432892_SNP [dm3] 2L_7432892_SNP [dm6]	A	G	4.686e^-4	1	INTRON CG5958
3R	19012564	3R_19012564_SNP [dm3] 3R_23186842_SNP [dm6]	G	A	4.686e^-4	1	UTR_3_PRIME cnc
2R	8501491	2R_8501491_SNP [dm3] 2R_12613986_SNP [dm6]	C	T	4.688e^-4	1	UTR_5_PRIME Galphaq UTR_3_PRIME CG45086 INTRON Galphaq	TF binding site BDTNP1_TFBS_dl
3L	12480585	3L_12480585_SNP [dm3] 3L_12487485_SNP [dm6]	A	G	4.696e^-4	1	INTRON CG10660	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	13471942	2R_13471942_DEL [dm3] 2R_17584437_DEL [dm6]	GCTAGAATATGTATGC...	G	4.698e^-4	1	UPSTREAM CG6484 DOWNSTREAM CG14483 EXON CR45274
2L	10218956	2L_10218956_SNP [dm3] 2L_10218956_SNP [dm6]	G	T	4.717e^-4	1	INTRON Npc1a
3R	19173918	3R_19173918_SNP [dm3] 3R_23348196_SNP [dm6]	C	A	4.722e^-4	1	SYNONYMOUS_CODING DNApol-epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	17287684	2L_17287684_SNP [dm3] 2L_17287684_SNP [dm6]	C	T	4.724e^-4	1	DOWNSTREAM CG15140 INTERGENIC
3R	26060546	3R_26060546_SNP [dm3] 3R_30234824_SNP [dm6]	C	T	4.728e^-4	1	INTERGENIC
3L	21064312	3L_21064312_SNP [dm3] 3L_21071212_SNP [dm6]	G	A	4.729e^-4	1	INTRON siz
2R	19506180	2R_19506180_SNP [dm3] 2R_23618657_SNP [dm6]	C	T	4.737e^-4	1	INTERGENIC
3L	1888682	3L_1888682_SNP [dm3] 3L_1888682_SNP [dm6]	A	C	4.741e^-4	1	UPSTREAM Tmhs INTRON Tmhs	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	12201722	3L_12201722_SNP [dm3] 3L_12208622_SNP [dm6]	T	C	4.746e^-4	1	DOWNSTREAM app INTRON app
X	1276404	X_1276404_SNP [dm3] X_1382371_SNP [dm6]	T	G	4.756e^-4	1	INTRON CG32813
3L	11420173	3L_11420173_SNP [dm3] 3L_11427073_SNP [dm6]	A	C	4.757e^-4	1	DOWNSTREAM CG7560 INTERGENIC
2L	9640130	2L_9640130_SNP [dm3] 2L_9640130_SNP [dm6]	A	G	4.763e^-4	1	INTRON Apoltp
3R	9570166	3R_9570166_SNP [dm3] 3R_13744444_SNP [dm6]	C	T	4.765e^-4	1	INTRON CG34383
3R	11990452	3R_11990452_SNP [dm3] 3R_16164730_SNP [dm6]	A	G	4.769e^-4	1	INTRON CG6006
2L	12811031	2L_12811031_SNP [dm3] 2L_12811031_SNP [dm6]	G	T	4.773e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9363837	3R_9363837_SNP [dm3] 3R_13538115_SNP [dm6]	C	G	4.779e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	5241854	3L_5241854_SNP [dm3] 3L_5248754_SNP [dm6]	C	T	4.789e^-4	1	UPSTREAM shep INTRON shep
3R	18346829	3R_18346829_SNP [dm3] 3R_22521107_SNP [dm6]	G	A	4.792e^-4	1	SYNONYMOUS_CODING CG5346	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11008118	3R_11008118_SNP [dm3] 3R_15182396_SNP [dm6]	A	C	4.801e^-4	1	UPSTREAM Mf INTRON Gyc88E
X	5464146	X_5464146_SNP [dm3] X_5570113_SNP [dm6]	T	C	4.804e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_eve mE1_TFBS_HSA
3L	2491809	3L_2491809_SNP [dm3] 3L_2491809_SNP [dm6]	A	C	4.810e^-4	1	SYNONYMOUS_CODING CG1146 INTRON CG45186	TF binding site mE1_TFBS_chinmo
X	17070554	X_17070554_SNP [dm3] X_17176521_SNP [dm6]	C	T	4.824e^-4	1	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Kr mE1_TFBS_zfh1
X	15301978	X_15301978_SNP [dm3] X_15407945_SNP [dm6]	T	C	4.840e^-4	1	UTR_3_PRIME Cngl INTRON Cngl
3L	13851984	3L_13851984_SNP [dm3] 3L_13858884_SNP [dm6]	G	A	4.852e^-4	1	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16933735	3R_16933735_SNP [dm3] 3R_21108013_SNP [dm6]	T	A	4.858e^-4	1	UPSTREAM rtet & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5504141	2L_5504141_SNP [dm3] 2L_5504141_SNP [dm6]	C	G	4.876e^-4	1	INTERGENIC
2R	11454826	2R_11454826_SNP [dm3] 2R_15567321_SNP [dm6]	C	T	4.895e^-4	1	SYNONYMOUS_CODING Flo1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25404020	3R_25404020_SNP [dm3] 3R_29578298_SNP [dm6]	T	G	4.895e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
2R	7032754	2R_7032754_SNP [dm3] 2R_11145249_SNP [dm6]	G	C	4.901e^-4	1	INTRON CG13229	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4762960	3L_4762960_SNP [dm3] 3L_4762960_SNP [dm6]	T	A	4.910e^-4	1	INTRON RhoGEF64C
3R	21705745	3R_21705745_SNP [dm3] 3R_25880023_SNP [dm6]	G	A	4.911e^-4	1	INTRON Tsp96F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
4	970711	4_970711_SNP [dm3] 4_950085_SNP [dm6]	C	T	4.912e^-4	1	DOWNSTREAM mGluR INTERGENIC	transposable element FlyBase
2L	14445313	2L_14445313_SNP [dm3] 2L_14445313_SNP [dm6]	G	T	4.914e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13041823	3R_13041823_SNP [dm3] 3R_17216101_SNP [dm6]	G	A	4.918e^-4	1	INTERGENIC
X	17739411	X_17739411_SNP [dm3] X_17845378_SNP [dm6]	C	T	4.918e^-4	1	UTR_5_PRIME Ucp4A UPSTREAM CG8142 INTRON Ucp4A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14221093	3R_14221093_SNP [dm3] 3R_18395371_SNP [dm6]	G	A	4.921e^-4	1	INTRON Vha100-2
X	2262566	X_2262566_SNP [dm3] X_2368533_SNP [dm6]	G	A	4.923e^-4	1	UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_chinmo
2R	14937752	2R_14937752_SNP [dm3] 2R_19050247_SNP [dm6]	T	C	4.923e^-4	1	INTERGENIC
X	6885051	X_6885051_SNP [dm3] X_6991018_SNP [dm6]	T	A	4.923e^-4	1	DOWNSTREAM Inx7 INTRON ogre	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24903697	3R_24903697_SNP [dm3] 3R_29077975_SNP [dm6]	A	T	4.927e^-4	1	INTRON CG11873
3L	18262602	3L_18262602_SNP [dm3] 3L_18269502_SNP [dm6]	T	C	4.931e^-4	1	INTERGENIC
3L	9399572	3L_9399572_SNP [dm3] 3L_9406472_SNP [dm6]	G	C	4.936e^-4	1	UTR_3_PRIME CG4022 DOWNSTREAM Cpr67B
2R	8686866	2R_8686866_SNP [dm3] 2R_12799361_SNP [dm6]	A	C	4.945e^-4	1	SYNONYMOUS_CODING sca UPSTREAM CR45137	TF binding site mE1_TFBS_cad
3R	26542647	3R_26542647_SNP [dm3] 3R_30716925_SNP [dm6]	A	C	4.949e^-4	1	INTERGENIC
2L	5350789	2L_5350789_SNP [dm3] 2L_5350789_SNP [dm6]	A	C	4.953e^-4	1	INTRON nompC
3L	13011277	3L_13011277_SNP [dm3] 3L_13018177_SNP [dm6]	A	T	4.964e^-4	1	UPSTREAM ste14 & 1 other DOWNSTREAM CR45445 INTERGENIC
2R	17798273	2R_17798273_SNP [dm3] 2R_21910768_SNP [dm6]	G	T	4.969e^-4	1	INTRON Fili
3L	624194	3L_624194_SNP [dm3] 3L_624194_SNP [dm6]	C	T	4.970e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12225592	3L_12225592_SNP [dm3] 3L_12232492_SNP [dm6]	T	C	4.971e^-4	1	INTRON app
3R	18166656	3R_18166656_SNP [dm3] 3R_22340934_SNP [dm6]	A	G	4.972e^-4	1	UPSTREAM CG5388 DOWNSTREAM CG5386 INTERGENIC
X	6333675	X_6333675_INS [dm3] X_6439642_INS [dm6]	A	ATTGGTTTATGGCA...	4.988e^-4	1	INTRON CG42340
2R	9248198	2R_9248198_SNP [dm3] 2R_13360693_SNP [dm6]	T	C	5.007e^-4	1	INTERGENIC
3R	4333220	3R_4333220_SNP [dm3] 3R_8507498_SNP [dm6]	C	T	5.033e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2694678	3L_2694678_SNP [dm3] 3L_2694678_SNP [dm6]	T	A	5.039e^-4	1	INTRON Fife
2R	9519287	2R_9519287_SNP [dm3] 2R_13631782_SNP [dm6]	G	A	5.045e^-4	1	INTRON fas
X	5903884	X_5903884_SNP [dm3] X_6009851_SNP [dm6]	C	T	5.048e^-4	1	INTRON mab-21
2L	622919	2L_622919_SNP [dm3] 2L_622919_SNP [dm6]	C	T	5.053e^-4	1	UPSTREAM CR44797 DOWNSTREAM CR44798 INTERGENIC
2R	6354173	2R_6354173_SNP [dm3] 2R_10466668_SNP [dm6]	C	G	5.057e^-4	1	NON_SYNONYMOUS_CODING Caf1-105 DOWNSTREAM Galphao	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16548392	2R_16548392_SNP [dm3] 2R_20660887_SNP [dm6]	T	A	5.065e^-4	1	UTR_3_PRIME Lrt UPSTREAM CG13437
2R	8719905	2R_8719905_SNP [dm3] 2R_12832400_SNP [dm6]	G	T	5.071e^-4	1	INTERGENIC
2R	9540262	2R_9540262_SNP [dm3] 2R_13652757_SNP [dm6]	C	T	5.076e^-4	1	INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4383191	3L_4383191_SNP [dm3] 3L_4383191_SNP [dm6]	G	A	5.084e^-4	1	INTERGENIC
3R	18245338	3R_18245338_SNP [dm3] 3R_22419616_SNP [dm6]	T	G	5.089e^-4	1	SYNONYMOUS_CODING Nop56 DOWNSTREAM lqfR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10510192	3L_10510192_SNP [dm3] 3L_10517092_SNP [dm6]	T	C	5.095e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8900424	2R_8900424_INS [dm3] 2R_13012919_INS [dm6]	C	CA	5.100e^-4	1	INTERGENIC
2R	16239259	2R_16239259_SNP [dm3] 2R_20351754_SNP [dm6]	C	T	5.100e^-4	1	INTERGENIC
2L	17326059	2L_17326059_SNP [dm3] 2L_17326059_SNP [dm6]	G	T	5.101e^-4	1	INTERGENIC
2R	6637861	2R_6637861_SNP [dm3] 2R_10750356_SNP [dm6]	C	A	5.105e^-4	1	INTRON CG33144
2L	14888794	2L_14888794_DEL [dm3] 2L_14888794_DEL [dm6]	AATA	A	5.107e^-4	1	INTERGENIC
2R	13453459	2R_13453459_SNP [dm3] 2R_17565954_SNP [dm6]	G	T	5.112e^-4	1	NON_SYNONYMOUS_CODING Ns2 DOWNSTREAM CG14480	TF binding site mE1_TFBS_sens
2R	7682975	2R_7682975_SNP [dm3] 2R_11795470_SNP [dm6]	G	A	5.120e^-4	1	INTRON ths	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	20475524	2R_20475524_SNP [dm3] 2R_24588001_SNP [dm6]	C	G	5.133e^-4	1	INTRON pio
2L	9586021	2L_9586021_SNP [dm3] 2L_9586021_SNP [dm6]	G	A	5.134e^-4	1	EXON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14092196	3R_14092196_SNP [dm3] 3R_18266474_SNP [dm6]	G	A	5.135e^-4	1	INTERGENIC
3R	16542345	3R_16542345_SNP [dm3] 3R_20716623_SNP [dm6]	A	C	5.140e^-4	1	INTERGENIC
2L	4847866	2L_4847866_SNP [dm3] 2L_4847866_SNP [dm6]	C	T	5.142e^-4	1	SYNONYMOUS_CODING CG11927 UPSTREAM mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21034765	3R_21034765_SNP [dm3] 3R_25209043_SNP [dm6]	C	T	5.143e^-4	1	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	7716863	X_7716863_SNP [dm3] X_7822830_SNP [dm6]	G	A	5.151e^-4	1	INTERGENIC
2R	19574164	2R_19574164_SNP [dm3] 2R_23686641_SNP [dm6]	G	T	5.153e^-4	1	NON_SYNONYMOUS_CODING St3	TF binding site mE1_TFBS_cad
2L	21763941	2L_21763941_SNP [dm3] 2L_21763941_SNP [dm6]	C	A	5.167e^-4	1	INTRON CG31612
X	17739369	X_17739369_SNP [dm3] X_17845336_SNP [dm6]	T	A	5.167e^-4	1	UTR_5_PRIME Ucp4A UPSTREAM CG8142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9183744	2R_9183744_SNP [dm3] 2R_13296239_SNP [dm6]	A	G	5.172e^-4	1	UPSTREAM Dh31-R DOWNSTREAM CG4734 INTERGENIC
3R	14092191	3R_14092191_SNP [dm3] 3R_18266469_SNP [dm6]	A	T	5.172e^-4	1	INTERGENIC
4	1065025	4_1065025_SNP [dm3] 4_1044399_SNP [dm6]	T	G	5.176e^-4	1	INTRON CaMKII
3R	18533415	3R_18533415_SNP [dm3] 3R_22707693_SNP [dm6]	T	G	5.185e^-4	1	UPSTREAM CG13842 DOWNSTREAM CG4907 INTERGENIC
2L	22170735	2L_22170735_SNP [dm3] 2L_22170735_SNP [dm6]	T	A	5.187e^-4	1	DOWNSTREAM CR44809 INTERGENIC
3L	13023518	3L_13023518_SNP [dm3] 3L_13030418_SNP [dm6]	G	A	5.190e^-4	1	INTRON CG17672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9307007	3L_9307007_DEL [dm3] 3L_9313907_DEL [dm6]	TCAGTTGAAAAAGATG...	T	5.193e^-4	1	INTERGENIC
3L	21071091	3L_21071091_SNP [dm3] 3L_21077991_SNP [dm6]	G	A	5.194e^-4	1	SYNONYMOUS_CODING ko	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15418648	2R_15418648_SNP [dm3] 2R_19531143_SNP [dm6]	G	A	5.200e^-4	1	INTRON sm
3L	6679048	3L_6679048_SNP [dm3] 3L_6685948_SNP [dm6]	C	A	5.204e^-4	1	INTERGENIC
3R	14680558	3R_14680558_SNP [dm3] 3R_18854836_SNP [dm6]	C	T	5.205e^-4	1	INTERGENIC
2R	11993743	2R_11993743_DEL [dm3] 2R_16106238_DEL [dm6]	AACA	C	5.213e^-4	1	UTR_3_PRIME Rho1
3R	16933544	3R_16933544_SNP [dm3] 3R_21107822_SNP [dm6]	A	G	5.227e^-4	1	SYNONYMOUS_CODING Sec15 UPSTREAM rtet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26542453	3R_26542453_SNP [dm3] 3R_30716731_SNP [dm6]	G	C	5.235e^-4	1	INTERGENIC
2L	9556463	2L_9556463_SNP [dm3] 2L_9556463_SNP [dm6]	T	C	5.241e^-4	1	INTRON jp
2L	7773747	2L_7773747_SNP [dm3] 2L_7773747_SNP [dm6]	T	C	5.247e^-4	1	INTRON CG7191
2R	19398740	2R_19398740_SNP [dm3] 2R_23511217_SNP [dm6]	G	A	5.250e^-4	1	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
3R	11963001	3R_11963001_SNP [dm3] 3R_16137279_SNP [dm6]	A	T	5.250e^-4	1	INTRON Sb
X	17433596	X_17433596_SNP [dm3] X_17539563_SNP [dm6]	A	C	5.253e^-4	1	INTRON CG43658
3L	12955606	3L_12955606_SNP [dm3] 3L_12962506_SNP [dm6]	C	T	5.254e^-4	1	INTERGENIC
3L	918125	3L_918125_SNP [dm3] 3L_918125_SNP [dm6]	T	A	5.261e^-4	1	INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14265072	X_14265072_DEL [dm3] X_14371039_DEL [dm6]	GCTGTAAATCTGG...	G	5.263e^-4	1	INTRON dpr8
3R	11879081	3R_11879081_SNP [dm3] 3R_16053359_SNP [dm6]	C	A	5.278e^-4	1	INTRON msps
2L	9618013	2L_9618013_SNP [dm3] 2L_9618013_SNP [dm6]	T	C	5.281e^-4	1	INTRON GlcAT-S
2R	19370677	2R_19370677_SNP [dm3] 2R_23483154_SNP [dm6]	C	G	5.285e^-4	1	INTRON CG43795	TF binding site mE1_TFBS_chinmo
2R	15815127	2R_15815127_SNP [dm3] 2R_19927622_SNP [dm6]	T	A	5.285e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9594699	2L_9594699_SNP [dm3] 2L_9594699_SNP [dm6]	C	T	5.288e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	3172019	X_3172019_SNP [dm3] X_3277986_SNP [dm6]	A	T	5.298e^-4	1	INTRON dnc
3R	12680743	3R_12680743_INS [dm3] 3R_16855021_INS [dm6]	A	ATAGGTTATTTTA...	5.316e^-4	1	INTRON iab-8 & 1 other EXON iab-4 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	10242457	3L_10242457_SNP [dm3] 3L_10249357_SNP [dm6]	C	T	5.316e^-4	1	UPSTREAM CR44540 INTERGENIC
3R	15618348	3R_15618348_SNP [dm3] 3R_19792626_SNP [dm6]	T	C	5.332e^-4	1	INTERGENIC
3L	5549429	3L_5549429_SNP [dm3] 3L_5556329_SNP [dm6]	G	T	5.350e^-4	1	INTERGENIC
3L	14398535	3L_14398535_SNP [dm3] 3L_14405435_SNP [dm6]	G	A	5.352e^-4	1	SYNONYMOUS_CODING stwl	TF binding site mE1_TFBS_sens
2R	11450093	2R_11450093_SNP [dm3] 2R_15562588_SNP [dm6]	G	A	5.376e^-4	1	DOWNSTREAM CG8195 & 1 other INTERGENIC
2R	9253987	2R_9253987_SNP [dm3] 2R_13366482_SNP [dm6]	A	G	5.377e^-4	1	INTERGENIC
3L	13027732	3L_13027732_SNP [dm3] 3L_13034632_SNP [dm6]	G	T	5.381e^-4	1	INTRON CG17672
3R	16933734	3R_16933734_SNP [dm3] 3R_21108012_SNP [dm6]	T	C	5.382e^-4	1	UPSTREAM rtet & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16462912	2R_16462912_SNP [dm3] 2R_20575407_SNP [dm6]	C	T	5.385e^-4	1	INTRON qsm
2R	20222349	2R_20222349_SNP [dm3] 2R_24334826_SNP [dm6]	C	G	5.390e^-4	1	UPSTREAM slbo EXON CR44282	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	5568671	2L_5568671_SNP [dm3] 2L_5568671_SNP [dm6]	G	A	5.392e^-4	1	INTERGENIC
2R	8905037	2R_8905037_SNP [dm3] 2R_13017532_SNP [dm6]	C	T	5.398e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15568540	2L_15568540_SNP [dm3] 2L_15568540_SNP [dm6]	G	A	5.405e^-4	1	INTRON kek3
3R	16933342	3R_16933342_SNP [dm3] 3R_21107620_SNP [dm6]	C	T	5.409e^-4	1	SYNONYMOUS_CODING Sec15 UPSTREAM rtet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10041169	3L_10041169_SNP [dm3] 3L_10048069_SNP [dm6]	T	A	5.413e^-4	1	INTRON dpr6
2R	19595432	2R_19595432_SNP [dm3] 2R_23707909_SNP [dm6]	C	T	5.413e^-4	1	SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9059368	3L_9059368_SNP [dm3] 3L_9066268_SNP [dm6]	A	C	5.425e^-4	1	UPSTREAM Argk DOWNSTREAM CG4911 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	13178677	2R_13178677_SNP [dm3] 2R_17291172_SNP [dm6]	A	G	5.432e^-4	1	INTRON mbl
2L	4453891	2L_4453891_SNP [dm3] 2L_4453891_SNP [dm6]	C	T	5.435e^-4	1	SYNONYMOUS_CODING CG15440 UPSTREAM CG15439 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	22313873	2L_22313873_SNP [dm3] 2L_22313873_SNP [dm6]	A	G	5.444e^-4	1	INTRON CG17018
2R	17387026	2R_17387026_SNP [dm3] 2R_21499521_SNP [dm6]	C	T	5.452e^-4	1	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
2L	1142438	2L_1142438_SNP [dm3] 2L_1142438_SNP [dm6]	A	G	5.454e^-4	1	UPSTREAM CR45717 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	23124771	3R_23124771_SNP [dm3] 3R_27299049_SNP [dm6]	C	A	5.455e^-4	1	INTRON CG3339
2R	2157998	2R_2157998_SNP [dm3] 2R_6270493_SNP [dm6]	A	T	5.473e^-4	1	INTERGENIC	transposable element FlyBase
2L	15371097	2L_15371097_SNP [dm3] 2L_15371097_SNP [dm6]	T	A	5.477e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5365554	2L_5365554_SNP [dm3] 2L_5365554_SNP [dm6]	T	C	5.497e^-4	1	UTR_3_PRIME nompC DOWNSTREAM nompC	TF binding site mE1_TFBS_bab1
2R	5778464	2R_5778464_SNP [dm3] 2R_9890959_SNP [dm6]	T	C	5.502e^-4	1	SYNONYMOUS_CODING CG30008 UPSTREAM CG30007 INTRON CG1513	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens
2R	13458838	2R_13458838_SNP [dm3] 2R_17571333_SNP [dm6]	G	A	5.505e^-4	1	SYNONYMOUS_CODING POSH DOWNSTREAM CG14482
3L	13034848	3L_13034848_SNP [dm3] 3L_13041748_SNP [dm6]	C	T	5.528e^-4	1	UPSTREAM RpS4 DOWNSTREAM SRm160 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
4	318366	4_318366_DEL [dm3] 4_297740_DEL [dm6]	TT	T	5.528e^-4	1	INTRON Syt7	transposable element FlyBase
3L	12484512	3L_12484512_SNP [dm3] 3L_12491412_SNP [dm6]	C	A	5.536e^-4	1	UPSTREAM CG10660 & 1 other DOWNSTREAM CG10657 & 1 other INTERGENIC
3R	16926422	3R_16926422_SNP [dm3] 3R_21100700_SNP [dm6]	A	G	5.547e^-4	1	NON_SYNONYMOUS_CODING CG7044	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6240809	2R_6240809_SNP [dm3] 2R_10353304_SNP [dm6]	A	T	5.553e^-4	1	UPSTREAM CG12907 & 3 others INTRON CG42732
2R	4655267	2R_4655267_SNP [dm3] 2R_8767762_SNP [dm6]	T	C	5.560e^-4	1	DOWNSTREAM CR44278 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	9588447	2L_9588447_SNP [dm3] 2L_9588447_SNP [dm6]	A	G	5.561e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10143931	2R_10143931_SNP [dm3] 2R_14256426_SNP [dm6]	G	A	5.561e^-4	1	UPSTREAM CG8531 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19528542	2R_19528542_SNP [dm3] 2R_23641019_SNP [dm6]	T	A	5.563e^-4	1	INTRON retn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	1209550	3L_1209550_SNP [dm3] 3L_1209550_SNP [dm6]	C	T	5.564e^-4	1	UPSTREAM LysC INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	12137434	2R_12137434_SNP [dm3] 2R_16249929_SNP [dm6]	G	T	5.593e^-4	1	UPSTREAM CngA INTRON CngA
2L	4050100	2L_4050100_SNP [dm3] 2L_4050100_SNP [dm6]	G	A	5.606e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22308241	2L_22308241_SNP [dm3] 2L_22308241_SNP [dm6]	G	C	5.612e^-4	1	UPSTREAM CG17018 INTERGENIC	transposable element FlyBase
3L	6583963	3L_6583963_SNP [dm3] 3L_6590863_SNP [dm6]	G	A	5.615e^-4	1	INTRON CG18769
2R	19135493	2R_19135493_SNP [dm3] 2R_23247970_SNP [dm6]	G	T	5.618e^-4	1	UPSTREAM RpL22-like INTERGENIC
2L	17527196	2L_17527196_SNP [dm3] 2L_17527196_SNP [dm6]	C	G	5.620e^-4	1	NON_SYNONYMOUS_CODING CG15144	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17993916	2L_17993916_SNP [dm3] 2L_17993916_SNP [dm6]	G	A	5.648e^-4	1	EXON CR44767
2L	20498980	2L_20498980_SNP [dm3] 2L_20498980_SNP [dm6]	T	C	5.657e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16572410	2L_16572410_INS [dm3] 2L_16572410_INS [dm6]	T	TGA	5.658e^-4	1	INTRON CG42389
2R	6113297	2R_6113297_SNP [dm3] 2R_10225792_SNP [dm6]	A	C	5.661e^-4	1	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15371090	2L_15371090_INS [dm3] 2L_15371090_INS [dm6]	A	AA	5.679e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12151789	X_12151789_SNP [dm3] X_12257756_SNP [dm6]	C	A	5.684e^-4	1	INTRON Ten-a
3R	21484821	3R_21484821_SNP [dm3] 3R_25659099_SNP [dm6]	T	C	5.686e^-4	1	INTRON Tnks	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12807245	2L_12807245_SNP [dm3] 2L_12807245_SNP [dm6]	T	A	5.687e^-4	1	DOWNSTREAM CR43818 INTERGENIC
3R	18436123	3R_18436123_SNP [dm3] 3R_22610401_SNP [dm6]	G	A	5.687e^-4	1	SYNONYMOUS_CODING CG13843 INTRON CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6305491	3L_6305491_SNP [dm3] 3L_6312391_SNP [dm6]	C	G	5.690e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	3824500	2R_3824500_SNP [dm3] 2R_7936995_SNP [dm6]	T	A	5.690e^-4	1	SYNONYMOUS_CODING CG8728 DOWNSTREAM drosha	TF binding site mE1_TFBS_chinmo
3L	1338246	3L_1338246_SNP [dm3] 3L_1338246_SNP [dm6]	G	A	5.704e^-4	1	SYNONYMOUS_CODING l_3_02640	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21844552	2L_21844552_SNP [dm3] 2L_21844552_SNP [dm6]	T	G	5.707e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14447946	2R_14447946_SNP [dm3] 2R_18560441_SNP [dm6]	G	A	5.717e^-4	1	SYNONYMOUS_CODING GEFmeso START_GAINED GEFmeso UTR_5_PRIME GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15301966	X_15301966_SNP [dm3] X_15407933_SNP [dm6]	A	G	5.720e^-4	1	UTR_3_PRIME Cngl INTRON Cngl
2L	3979583	2L_3979583_SNP [dm3] 2L_3979583_SNP [dm6]	T	G	5.726e^-4	1	INTRON fred
3L	2694684	3L_2694684_SNP [dm3] 3L_2694684_SNP [dm6]	T	G	5.726e^-4	1	INTRON Fife
3L	11331564	3L_11331564_SNP [dm3] 3L_11338464_SNP [dm6]	G	C	5.728e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
X	13434605	X_13434605_SNP [dm3] X_13540572_SNP [dm6]	G	A	5.735e^-4	1	INTERGENIC
2L	8573066	2L_8573066_SNP [dm3] 2L_8573066_SNP [dm6]	A	G	5.747e^-4	1	INTRON Sema-1a
3L	833013	3L_833013_SNP [dm3] 3L_833013_SNP [dm6]	A	C	5.759e^-4	1	UPSTREAM snoRNA:Psi28S-3308 DOWNSTREAM snoRNA:Psi18S-1086 INTRON CG13900	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9961658	2L_9961658_SNP [dm3] 2L_9961658_SNP [dm6]	G	C	5.763e^-4	1	INTRON CG5850 EXON CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16253785	2R_16253785_SNP [dm3] 2R_20366280_SNP [dm6]	A	T	5.778e^-4	1	INTERGENIC
2L	14921060	2L_14921060_SNP [dm3] 2L_14921060_SNP [dm6]	A	G	5.780e^-4	1	INTRON CG42313
2R	6371789	2R_6371789_SNP [dm3] 2R_10484284_SNP [dm6]	A	T	5.781e^-4	1	UTR_5_PRIME pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14224571	3R_14224571_SNP [dm3] 3R_18398849_SNP [dm6]	T	C	5.786e^-4	1	UPSTREAM CG44009 INTRON Vha100-2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2795706	2L_2795706_SNP [dm3] 2L_2795706_SNP [dm6]	C	T	5.791e^-4	1	UPSTREAM Syt1 INTRON Syt1
2L	13993134	2L_13993134_SNP [dm3] 2L_13993134_SNP [dm6]	T	C	5.791e^-4	1	SYNONYMOUS_CODING rk
3R	25397047	3R_25397047_SNP [dm3] 3R_29571325_SNP [dm6]	C	T	5.805e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20423839	2R_20423839_SNP [dm3] 2R_24536316_SNP [dm6]	T	C	5.811e^-4	1	SYNONYMOUS_CODING CG11413 UTR_5_PRIME CG4622 UPSTREAM CG4622	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13181962	2L_13181962_SNP [dm3] 2L_13181962_SNP [dm6]	C	T	5.812e^-4	1	NON_SYNONYMOUS_CODING CG31849 INTRON CG5287	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9586379	2L_9586379_SNP [dm3] 2L_9586379_SNP [dm6]	A	T	5.818e^-4	1	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	4641657	3L_4641657_SNP [dm3] 3L_4641657_SNP [dm6]	A	G	5.830e^-4	1	DOWNSTREAM axo INTRON axo
3L	624181	3L_624181_SNP [dm3] 3L_624181_SNP [dm6]	A	G	5.833e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	624184	3L_624184_SNP [dm3] 3L_624184_SNP [dm6]	T	A	5.833e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19995487	3L_19995487_SNP [dm3] 3L_20002387_SNP [dm6]	C	A	5.834e^-4	1	UTR_3_PRIME Tom20 UPSTREAM CG7668 DOWNSTREAM Tom20	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Stat92E
2L	9655361	2L_9655361_SNP [dm3] 2L_9655361_SNP [dm6]	T	G	5.834e^-4	1	SYNONYMOUS_CODING Apoltp
X	7885533	X_7885533_SNP [dm3] X_7991500_SNP [dm6]	C	T	5.843e^-4	1	INTERGENIC
X	14695527	X_14695527_SNP [dm3] X_14801494_SNP [dm6]	G	A	5.845e^-4	1	INTRON rut
3L	13736384	3L_13736384_SNP [dm3] 3L_13743284_SNP [dm6]	C	G	5.858e^-4	1	INTRON bru-3
3L	13102509	3L_13102509_SNP [dm3] 3L_13109409_SNP [dm6]	C	A	5.859e^-4	1	INTERGENIC
3R	16928424	3R_16928424_SNP [dm3] 3R_21102702_SNP [dm6]	C	T	5.860e^-4	1	UPSTREAM CG7044 INTRON CG5745	TF binding site BDTNP1_TFBS_dl
2L	9589920	2L_9589920_SNP [dm3] 2L_9589920_SNP [dm6]	A	C	5.865e^-4	1	SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
3R	556629	3R_556629_SNP [dm3] 3R_4730907_SNP [dm6]	T	C	5.866e^-4	1	INTRON Nep2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9068026	3R_9068026_SNP [dm3] 3R_13242304_SNP [dm6]	C	G	5.877e^-4	1	INTRON Ace
X	18390997	X_18390997_SNP [dm3] X_18496964_SNP [dm6]	G	A	5.885e^-4	1	SYNONYMOUS_CODING GalNAc-T2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17441493	X_17441493_SNP [dm3] X_17547460_SNP [dm6]	G	C	5.885e^-4	1	INTRON CG43658
2L	22520536	2L_22520536_SNP [dm3] 2L_22627804_SNP [dm6]	A	G	5.887e^-4	1	INTRON CG40006
2R	17425396	2R_17425396_SNP [dm3] 2R_21537891_SNP [dm6]	C	A	5.893e^-4	1	SYNONYMOUS_CODING CG30287 DOWNSTREAM CG33226 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17425423	2R_17425423_SNP [dm3] 2R_21537918_SNP [dm6]	G	A	5.893e^-4	1	SYNONYMOUS_CODING CG30287 DOWNSTREAM CG33226 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19695787	3R_19695787_SNP [dm3] 3R_23870065_SNP [dm6]	C	T	5.893e^-4	1	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9068074	3R_9068074_SNP [dm3] 3R_13242352_SNP [dm6]	G	A	5.908e^-4	1	INTRON Ace
2R	17366437	2R_17366437_SNP [dm3] 2R_21478932_SNP [dm6]	T	A	5.911e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	6953017	2R_6953017_SNP [dm3] 2R_11065512_SNP [dm6]	G	A	5.915e^-4	1	INTRON luna
3R	11628659	3R_11628659_SNP [dm3] 3R_15802937_SNP [dm6]	T	C	5.918e^-4	1	NON_SYNONYMOUS_CODING CG9593 DOWNSTREAM nsl1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10482574	2L_10482574_SNP [dm3] 2L_10482574_SNP [dm6]	T	A	5.921e^-4	1	NON_SYNONYMOUS_CODING RluA-2 SPLICE_SITE_REGION RluA-2 UTR_3_PRIME RluA-2 UPSTREAM Grip75	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	17922656	X_17922656_SNP [dm3] X_18028623_SNP [dm6]	C	A	5.921e^-4	1	DOWNSTREAM CG6867 INTRON Sh
2L	13594376	2L_13594376_SNP [dm3] 2L_13594376_SNP [dm6]	C	T	5.922e^-4	1	INTRON kuz
2L	9654982	2L_9654982_SNP [dm3] 2L_9654982_SNP [dm6]	G	A	5.927e^-4	1	SYNONYMOUS_CODING Apoltp
3R	13535389	3R_13535389_SNP [dm3] 3R_17709667_SNP [dm6]	A	G	5.932e^-4	1	INTRON osa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10733323	3L_10733323_SNP [dm3] 3L_10740223_SNP [dm6]	T	A	5.934e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	23740017	3R_23740017_SNP [dm3] 3R_27914295_SNP [dm6]	G	A	5.942e^-4	1	SYNONYMOUS_CODING CG5003 DOWNSTREAM hanabi	TF binding site mE1_TFBS_chinmo
X	10873117	X_10873117_SNP [dm3] X_10979084_SNP [dm6]	A	G	5.950e^-4	1	INTRON CG42339
X	17922820	X_17922820_SNP [dm3] X_18028787_SNP [dm6]	C	A	5.962e^-4	1	DOWNSTREAM CG6867 INTRON Sh
2L	3983150	2L_3983150_SNP [dm3] 2L_3983150_SNP [dm6]	T	C	5.966e^-4	1	INTRON fred
3L	7746891	3L_7746891_SNP [dm3] 3L_7753791_SNP [dm6]	G	T	5.966e^-4	1	UPSTREAM CG7409 INTRON CG32373
2L	9433817	2L_9433817_SNP [dm3] 2L_9433817_SNP [dm6]	G	C	5.974e^-4	1	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10098610	3L_10098610_SNP [dm3] 3L_10105510_SNP [dm6]	C	A	5.974e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
X	6429475	X_6429475_SNP [dm3] X_6535442_SNP [dm6]	G	T	5.975e^-4	1	INTRON dx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	622900	2L_622900_SNP [dm3] 2L_622900_SNP [dm6]	A	T	5.989e^-4	1	UPSTREAM CR44797 DOWNSTREAM CR44798 INTERGENIC
2L	304013	2L_304013_SNP [dm3] 2L_304013_SNP [dm6]	T	G	5.990e^-4	1	UTR_3_PRIME Pi3K21B DOWNSTREAM Pi3K21B
2L	304015	2L_304015_SNP [dm3] 2L_304015_SNP [dm6]	A	T	5.990e^-4	1	UTR_3_PRIME Pi3K21B DOWNSTREAM Pi3K21B
2L	12148133	2L_12148133_SNP [dm3] 2L_12148133_SNP [dm6]	T	A	5.991e^-4	1	INTRON CG31760
X	12835438	X_12835438_SNP [dm3] X_12941405_SNP [dm6]	T	G	5.996e^-4	1	UTR_5_PRIME fne INTRON fne	TF binding site BDTNP1_TFBS_dl
2L	6547494	2L_6547494_SNP [dm3] 2L_6547494_SNP [dm6]	C	G	6.018e^-4	1	UPSTREAM eya INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	20550817	X_20550817_SNP [dm3] X_20679790_SNP [dm6]	C	T	6.032e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	4387598	X_4387598_SNP [dm3] X_4493565_SNP [dm6]	C	T	6.035e^-4	1	INTRON CR32773
2L	3280004	2L_3280004_SNP [dm3] 2L_3280004_SNP [dm6]	T	C	6.038e^-4	1	UPSTREAM CG3332 INTRON CG3332
2L	5568536	2L_5568536_SNP [dm3] 2L_5568536_SNP [dm6]	C	T	6.039e^-4	1	INTERGENIC
2L	10281264	2L_10281264_SNP [dm3] 2L_10281264_SNP [dm6]	A	T	6.050e^-4	1	UPSTREAM CG34043 DOWNSTREAM CG5604 INTERGENIC
3L	13023780	3L_13023780_SNP [dm3] 3L_13030680_SNP [dm6]	C	T	6.057e^-4	1	INTRON CG17672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Sample.size Experience 1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results