DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.002e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1219 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	20188889	2R_20188889_SNP [dm3] 2R_24301366_SNP [dm6]	T	G	3.922e^-6	0.876	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13993156	2R_13993156_SNP [dm3] 2R_18105651_SNP [dm6]	T	G	9.479e^-6	0.876	INTRON CG5756
X	21910607	X_21910607_SNP [dm3] X_22508771_SNP [dm6]	C	A	2.431e^-5	0.876	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	970831	3L_970831_SNP [dm3] 3L_970831_SNP [dm6]	A	G	2.492e^-5	0.876	INTRON Glut1
2R	19886410	2R_19886410_SNP [dm3] 2R_23998887_SNP [dm6]	G	A	3.646e^-5	0.876	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
2L	1068382	2L_1068382_SNP [dm3] 2L_1068382_SNP [dm6]	G	A	3.802e^-5	0.876	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10886371	2R_10886371_SNP [dm3] 2R_14998866_SNP [dm6]	T	C	4.157e^-5	0.876	INTERGENIC
3L	2998162	3L_2998162_SNP [dm3] 3L_2998162_SNP [dm6]	A	T	4.502e^-5	0.876	INTERGENIC
2L	10747823	2L_10747823_SNP [dm3] 2L_10747823_SNP [dm6]	G	A	5.611e^-5	0.876	INTRON CG17124	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10604306	3R_10604306_SNP [dm3] 3R_14778584_SNP [dm6]	T	C	5.754e^-5	0.876	INTRON jvl
3L	2610285	3L_2610285_SNP [dm3] 3L_2610285_SNP [dm6]	C	T	5.767e^-5	0.876	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14425262	3R_14425262_SNP [dm3] 3R_18599540_SNP [dm6]	C	T	6.614e^-5	0.876	SYNONYMOUS_CODING CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17693124	3L_17693124_SNP [dm3] 3L_17700024_SNP [dm6]	G	T	6.802e^-5	0.876	INTRON Ccn
X	17167501	X_17167501_SNP [dm3] X_17273468_SNP [dm6]	A	G	7.039e^-5	0.876	INTRON f	TF binding site mE1_TFBS_cad
3R	11618443	3R_11618443_SNP [dm3] 3R_15792721_SNP [dm6]	A	G	7.209e^-5	0.876	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2L	7207281	2L_7207281_SNP [dm3] 2L_7207281_SNP [dm6]	T	C	7.746e^-5	0.876	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
2L	13321376	2L_13321376_SNP [dm3] 2L_13321376_SNP [dm6]	A	T	7.850e^-5	0.876	INTRON CG43778
2L	1050940	2L_1050940_SNP [dm3] 2L_1050940_SNP [dm6]	G	T	7.858e^-5	0.876	UTR_3_PRIME S DOWNSTREAM S
2L	1050942	2L_1050942_SNP [dm3] 2L_1050942_SNP [dm6]	A	T	7.858e^-5	0.876	UTR_3_PRIME S DOWNSTREAM S
3L	2659050	3L_2659050_SNP [dm3] 3L_2659050_SNP [dm6]	T	C	7.912e^-5	0.876	SYNONYMOUS_CODING Fife UTR_3_PRIME Fife UPSTREAM CG33233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
2L	19684274	2L_19684274_SNP [dm3] 2L_19684274_SNP [dm6]	T	C	7.950e^-5	0.876	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1051015	2L_1051015_SNP [dm3] 2L_1051015_SNP [dm6]	T	A	7.962e^-5	0.876	UTR_3_PRIME S DOWNSTREAM S
3L	2708979	3L_2708979_SNP [dm3] 3L_2708979_SNP [dm6]	T	C	7.975e^-5	0.876	INTRON Fife
3R	9784390	3R_9784390_SNP [dm3] 3R_13958668_SNP [dm6]	T	A	8.007e^-5	0.876	UPSTREAM Ipp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9784391	3R_9784391_SNP [dm3] 3R_13958669_SNP [dm6]	T	A	8.007e^-5	0.876	UPSTREAM Ipp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13541893	3L_13541893_INS [dm3] 3L_13548793_INS [dm6]	C	CGGACAC	8.019e^-5	0.876	INTRON bru-3
2L	15101700	2L_15101700_SNP [dm3] 2L_15101700_SNP [dm6]	G	C	8.180e^-5	0.876	INTERGENIC
3L	3039454	3L_3039454_SNP [dm3] 3L_3039454_SNP [dm6]	T	C	8.770e^-5	0.876	SYNONYMOUS_CODING CG2162	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11361516	2L_11361516_SNP [dm3] 2L_11361516_SNP [dm6]	T	C	8.952e^-5	0.876	INTRON salr	regulatory region REDfly_CRMs
2R	12456846	2R_12456846_SNP [dm3] 2R_16569341_SNP [dm6]	G	A	8.982e^-5	0.876	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12456810	2R_12456810_SNP [dm3] 2R_16569305_SNP [dm6]	A	G	1.077e^-4	0.876	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2610341	3L_2610341_SNP [dm3] 3L_2610341_SNP [dm6]	G	A	1.085e^-4	0.876	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	1.119e^-4	0.876	UTR_3_PRIME Syt1
2L	16317947	2L_16317947_SNP [dm3] 2L_16317947_SNP [dm6]	C	G	1.120e^-4	0.876	INTRON cact	TF binding site BDTNP1_TFBS_twi
2L	10021661	2L_10021661_SNP [dm3] 2L_10021661_SNP [dm6]	C	G	1.129e^-4	0.876	INTERGENIC
2L	10753216	2L_10753216_SNP [dm3] 2L_10753216_SNP [dm6]	A	C	1.153e^-4	0.876	INTRON CG17124
3R	9151822	3R_9151822_SNP [dm3] 3R_13326100_SNP [dm6]	T	C	1.155e^-4	0.876	INTERGENIC
X	19896549	X_19896549_SNP [dm3] X_20002516_SNP [dm6]	G	A	1.220e^-4	0.876	UPSTREAM CG17003 INTERGENIC
X	11139011	X_11139011_SNP [dm3] X_11244978_SNP [dm6]	C	G	1.221e^-4	0.876	INTRON CG44422
2L	15343672	2L_15343672_DEL [dm3] 2L_15343672_DEL [dm6]	AAAT	A	1.230e^-4	0.876	INTERGENIC
2L	15343677	2L_15343677_SNP [dm3] 2L_15343677_SNP [dm6]	A	T	1.230e^-4	0.876	INTERGENIC
2L	15343679	2L_15343679_SNP [dm3] 2L_15343679_SNP [dm6]	T	C	1.230e^-4	0.876	INTERGENIC
2L	15343680	2L_15343680_SNP [dm3] 2L_15343680_SNP [dm6]	T	A	1.230e^-4	0.876	INTERGENIC
2L	15343689	2L_15343689_SNP [dm3] 2L_15343689_SNP [dm6]	T	A	1.230e^-4	0.876	INTERGENIC
2L	4679672	2L_4679672_SNP [dm3] 2L_4679672_SNP [dm6]	G	T	1.249e^-4	0.876	INTERGENIC
2L	2663711	2L_2663711_SNP [dm3] 2L_2663711_SNP [dm6]	T	A	1.283e^-4	0.876	INTERGENIC
3R	10604354	3R_10604354_SNP [dm3] 3R_14778632_SNP [dm6]	T	G	1.290e^-4	0.876	INTRON jvl
X	12130287	X_12130287_SNP [dm3] X_12236254_SNP [dm6]	A	C	1.296e^-4	0.876	UPSTREAM CG32655 INTRON Ten-a
2L	3714053	2L_3714053_SNP [dm3] 2L_3714053_SNP [dm6]	G	C	1.311e^-4	0.876	UPSTREAM CG31955 & 1 other INTRON CG2818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21923850	X_21923850_SNP [dm3] X_22522014_SNP [dm6]	A	G	1.320e^-4	0.876	INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	9455395	2R_9455395_SNP [dm3] 2R_13567890_SNP [dm6]	T	A	1.323e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	13503985	2R_13503985_SNP [dm3] 2R_17616480_SNP [dm6]	A	G	1.337e^-4	0.876	UPSTREAM snoRNA:Or-aca4 DOWNSTREAM CG44403 INTRON CG10936	TF binding site BDTNP1_TFBS_dl
3L	8197120	3L_8197120_SNP [dm3] 3L_8204020_SNP [dm6]	T	C	1.338e^-4	0.876	DOWNSTREAM CG13679 INTERGENIC
3L	11253610	3L_11253610_SNP [dm3] 3L_11260510_SNP [dm6]	C	T	1.349e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	18180962	2R_18180962_SNP [dm3] 2R_22293457_SNP [dm6]	T	G	1.352e^-4	0.876	UTR_5_PRIME CG5819 INTRON CG5819
3L	10353951	3L_10353951_SNP [dm3] 3L_10360851_SNP [dm6]	T	A	1.358e^-4	0.876	EXON CR44327	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3714072	2L_3714072_SNP [dm3] 2L_3714072_SNP [dm6]	A	C	1.386e^-4	0.876	UPSTREAM CG31955 & 1 other INTRON CG2818	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9867295	3R_9867295_SNP [dm3] 3R_14041573_SNP [dm6]	T	C	1.475e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15289307	3R_15289307_SNP [dm3] 3R_19463585_SNP [dm6]	C	A	1.542e^-4	0.876	UTR_5_PRIME Dys UPSTREAM CG6255 INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	14642070	3L_14642070_SNP [dm3] 3L_14648970_SNP [dm6]	C	T	1.555e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642095	3L_14642095_SNP [dm3] 3L_14648995_SNP [dm6]	T	A	1.555e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642098	3L_14642098_SNP [dm3] 3L_14648998_SNP [dm6]	A	T	1.555e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642110	3L_14642110_SNP [dm3] 3L_14649010_SNP [dm6]	T	C	1.555e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	24902209	3R_24902209_SNP [dm3] 3R_29076487_SNP [dm6]	G	A	1.560e^-4	0.876	INTRON CG11873
2L	14032261	2L_14032261_SNP [dm3] 2L_14032261_SNP [dm6]	G	T	1.573e^-4	0.876	UPSTREAM CG18095 EXON CR45284
2L	3453053	2L_3453053_SNP [dm3] 2L_3453053_SNP [dm6]	A	C	1.611e^-4	0.876	SYNONYMOUS_CODING CG12795 DOWNSTREAM Snx1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25526883	3R_25526883_SNP [dm3] 3R_29701161_SNP [dm6]	A	T	1.614e^-4	0.876	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	25526886	3R_25526886_SNP [dm3] 3R_29701164_SNP [dm6]	G	T	1.614e^-4	0.876	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	25526896	3R_25526896_SNP [dm3] 3R_29701174_SNP [dm6]	G	T	1.614e^-4	0.876	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	16222318	2L_16222318_SNP [dm3] 2L_16222318_SNP [dm6]	A	G	1.634e^-4	0.876	INTERGENIC
2L	3712625	2L_3712625_SNP [dm3] 2L_3712625_SNP [dm6]	C	A	1.634e^-4	0.876	NON_SYNONYMOUS_CODING CG31955 UPSTREAM cutlet & 1 other INTRON CG31955	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
X	2730005	X_2730005_SNP [dm3] X_2835972_SNP [dm6]	T	C	1.646e^-4	0.876	INTRON kirre
X	16082234	X_16082234_SNP [dm3] X_16188201_SNP [dm6]	T	C	1.646e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	18640485	3R_18640485_SNP [dm3] 3R_22814763_SNP [dm6]	C	A	1.648e^-4	0.876	SYNONYMOUS_CODING CG13840
X	7136782	X_7136782_SNP [dm3] X_7242749_SNP [dm6]	C	A	1.659e^-4	0.876	DOWNSTREAM CG9650 INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10604335	3R_10604335_SNP [dm3] 3R_14778613_SNP [dm6]	G	A	1.666e^-4	0.876	INTRON jvl
X	18213027	X_18213027_SNP [dm3] X_18318994_SNP [dm6]	T	G	1.697e^-4	0.876	INTRON CG6023
3R	24807557	3R_24807557_SNP [dm3] 3R_28981835_SNP [dm6]	C	T	1.721e^-4	0.876	INTERGENIC
3L	17976841	3L_17976841_DEL [dm3] 3L_17983741_DEL [dm6]	CTATCACTC	C	1.732e^-4	0.876	INTRON Eip75B
2L	7944635	2L_7944635_SNP [dm3] 2L_7944635_SNP [dm6]	C	T	1.733e^-4	0.876	INTRON Snoo
2L	4806904	2L_4806904_SNP [dm3] 2L_4806904_SNP [dm6]	A	G	1.766e^-4	0.876	INTERGENIC
3R	24366641	3R_24366641_SNP [dm3] 3R_28540919_SNP [dm6]	G	A	1.771e^-4	0.876	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3535725	X_3535725_DEL [dm3] X_3641692_DEL [dm6]	AA	T	1.788e^-4	0.876	INTRON AstA-R1
2L	7946125	2L_7946125_SNP [dm3] 2L_7946125_SNP [dm6]	T	A	1.788e^-4	0.876	INTRON Snoo
X	21923868	X_21923868_SNP [dm3] X_22522032_SNP [dm6]	A	T	1.799e^-4	0.876	INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	14642063	3L_14642063_SNP [dm3] 3L_14648963_SNP [dm6]	T	G	1.827e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20530232	X_20530232_SNP [dm3] X_20659205_SNP [dm6]	A	G	1.829e^-4	0.876	INTRON Cyp6v1
3R	9151836	3R_9151836_SNP [dm3] 3R_13326114_SNP [dm6]	A	G	1.853e^-4	0.876	INTERGENIC
3L	2659386	3L_2659386_SNP [dm3] 3L_2659386_SNP [dm6]	T	G	1.858e^-4	0.876	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
3L	6600205	3L_6600205_SNP [dm3] 3L_6607105_SNP [dm6]	T	G	1.858e^-4	0.876	INTRON CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3536288	X_3536288_SNP [dm3] X_3642255_SNP [dm6]	T	G	1.869e^-4	0.876	INTRON AstA-R1
3L	14642039	3L_14642039_SNP [dm3] 3L_14648939_SNP [dm6]	T	G	1.886e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642051	3L_14642051_SNP [dm3] 3L_14648951_SNP [dm6]	T	C	1.886e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15120596	2L_15120596_SNP [dm3] 2L_15120596_SNP [dm6]	G	A	1.912e^-4	0.876	EXON CR43853
2L	9986084	2L_9986084_SNP [dm3] 2L_9986084_SNP [dm6]	G	A	1.916e^-4	0.876	INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14642109	3L_14642109_SNP [dm3] 3L_14649009_SNP [dm6]	A	T	1.924e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20879685	X_20879685_DEL [dm3] X_21008658_DEL [dm6]	TC	T	1.950e^-4	0.876	INTERGENIC
X	14260204	X_14260204_SNP [dm3] X_14366171_SNP [dm6]	A	G	1.969e^-4	0.876	INTRON dpr8
3R	15321702	3R_15321702_SNP [dm3] 3R_19495980_SNP [dm6]	G	T	2.006e^-4	0.876	INTRON Dys	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19304630	2R_19304630_SNP [dm3] 2R_23417107_SNP [dm6]	T	C	2.006e^-4	0.876	UTR_3_PRIME CG30411 INTRON CG9812	TF binding site mE1_TFBS_HSA
2L	14722937	2L_14722937_SNP [dm3] 2L_14722937_SNP [dm6]	G	C	2.015e^-4	0.876	INTERGENIC
3L	5376612	3L_5376612_DEL [dm3] 3L_5383512_DEL [dm6]	CTGT	A	2.019e^-4	0.876	UPSTREAM Ir64a INTERGENIC
X	15665108	X_15665108_SNP [dm3] X_15771075_SNP [dm6]	T	C	2.023e^-4	0.876	SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
2R	6508615	2R_6508615_SNP [dm3] 2R_10621110_SNP [dm6]	A	G	2.042e^-4	0.876	INTRON CG11883
3R	11140143	3R_11140143_SNP [dm3] 3R_15314421_SNP [dm6]	T	C	2.042e^-4	0.876	INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14387405	2L_14387405_DEL [dm3] 2L_14387405_DEL [dm6]	AA	A	2.066e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1605240	3L_1605240_SNP [dm3] 3L_1605240_SNP [dm6]	A	C	2.067e^-4	0.876	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
2L	11361515	2L_11361515_SNP [dm3] 2L_11361515_SNP [dm6]	A	G	2.069e^-4	0.876	INTRON salr	regulatory region REDfly_CRMs
2L	15343669	2L_15343669_SNP [dm3] 2L_15343669_SNP [dm6]	A	T	2.076e^-4	0.876	INTERGENIC
2L	15343684	2L_15343684_MNP [dm3] 2L_15343684_MNP [dm6]	GTT	ACA	2.076e^-4	0.876	INTERGENIC
2L	15343691	2L_15343691_DEL [dm3] 2L_15343691_DEL [dm6]	CAC	A	2.076e^-4	0.876	INTERGENIC
2R	12970435	2R_12970435_INS [dm3] 2R_17082930_INS [dm6]	C	CC	2.109e^-4	0.876	INTRON CG30460
2L	8768775	2L_8768775_SNP [dm3] 2L_8768775_SNP [dm6]	A	C	2.127e^-4	0.876	UPSTREAM CG9463 DOWNSTREAM CG9465 INTERGENIC
2R	12408082	2R_12408082_SNP [dm3] 2R_16520577_SNP [dm6]	T	G	2.135e^-4	0.876	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	16317713	2L_16317713_SNP [dm3] 2L_16317713_SNP [dm6]	C	T	2.144e^-4	0.876	INTRON cact	TF binding site BDTNP1_TFBS_twi
2L	14068721	2L_14068721_SNP [dm3] 2L_14068721_SNP [dm6]	T	C	2.146e^-4	0.876	INTRON nAChRalpha5
3L	2589083	3L_2589083_SNP [dm3] 3L_2589083_SNP [dm6]	C	A	2.162e^-4	0.876	UPSTREAM dos DOWNSTREAM RpL8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14642171	3L_14642171_SNP [dm3] 3L_14649071_SNP [dm6]	A	T	2.171e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5022545	X_5022545_SNP [dm3] X_5128512_SNP [dm6]	T	A	2.176e^-4	0.876	INTRON rg & 1 other
3R	14680608	3R_14680608_SNP [dm3] 3R_18854886_SNP [dm6]	T	G	2.182e^-4	0.876	INTERGENIC
3R	14680621	3R_14680621_SNP [dm3] 3R_18854899_SNP [dm6]	A	C	2.182e^-4	0.876	INTERGENIC
3R	14680648	3R_14680648_SNP [dm3] 3R_18854926_SNP [dm6]	A	T	2.182e^-4	0.876	INTERGENIC
3L	8246620	3L_8246620_SNP [dm3] 3L_8253520_SNP [dm6]	A	T	2.186e^-4	0.876	INTRON Dscam4
3R	25349630	3R_25349630_SNP [dm3] 3R_29523908_SNP [dm6]	C	T	2.197e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10512682	3L_10512682_SNP [dm3] 3L_10519582_SNP [dm6]	T	C	2.207e^-4	0.876	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10288242	2L_10288242_SNP [dm3] 2L_10288242_SNP [dm6]	T	A	2.210e^-4	0.876	INTRON CG5604
3R	9299421	3R_9299421_SNP [dm3] 3R_13473699_SNP [dm6]	C	T	2.214e^-4	0.876	INTERGENIC
3R	25220523	3R_25220523_SNP [dm3] 3R_29394801_SNP [dm6]	G	C	2.218e^-4	0.876	INTRON Ptp99A
2L	12807907	2L_12807907_SNP [dm3] 2L_12807907_SNP [dm6]	A	G	2.251e^-4	0.876	EXON CR43818
3R	9964529	3R_9964529_DEL [dm3] 3R_14138807_DEL [dm6]	CATT	C	2.274e^-4	0.876	INTERGENIC
3R	19569830	3R_19569830_SNP [dm3] 3R_23744108_SNP [dm6]	T	A	2.290e^-4	0.876	INTRON Hmgcr
2L	6507026	2L_6507026_SNP [dm3] 2L_6507026_SNP [dm6]	C	T	2.297e^-4	0.876	DOWNSTREAM CR44775 INTRON CG31637
3L	5957506	3L_5957506_SNP [dm3] 3L_5964406_SNP [dm6]	A	T	2.312e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13321339	2L_13321339_DEL [dm3] 2L_13321339_DEL [dm6]	CTTCC	C	2.313e^-4	0.876	INTRON CG43778
2L	13321374	2L_13321374_SNP [dm3] 2L_13321374_SNP [dm6]	A	G	2.313e^-4	0.876	INTRON CG43778
3R	14680629	3R_14680629_SNP [dm3] 3R_18854907_SNP [dm6]	C	T	2.339e^-4	0.876	INTERGENIC
3R	9673226	3R_9673226_SNP [dm3] 3R_13847504_SNP [dm6]	C	G	2.343e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14680570	3R_14680570_SNP [dm3] 3R_18854848_SNP [dm6]	C	A	2.345e^-4	0.876	INTERGENIC
3L	964153	3L_964153_SNP [dm3] 3L_964153_SNP [dm6]	T	C	2.346e^-4	0.876	INTRON Glut1
3L	964192	3L_964192_SNP [dm3] 3L_964192_SNP [dm6]	T	C	2.346e^-4	0.876	INTRON Glut1
3L	964204	3L_964204_SNP [dm3] 3L_964204_SNP [dm6]	G	A	2.346e^-4	0.876	INTRON Glut1
2R	10893903	2R_10893903_SNP [dm3] 2R_15006398_SNP [dm6]	A	G	2.358e^-4	0.876	INTERGENIC
2R	2463585	2R_2463585_SNP [dm3] 2R_6576080_SNP [dm6]	C	A	2.387e^-4	0.876	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2589141	3L_2589141_SNP [dm3] 3L_2589141_SNP [dm6]	C	T	2.395e^-4	0.876	UPSTREAM dos DOWNSTREAM RpL8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	21981948	X_21981948_SNP [dm3] X_22580112_SNP [dm6]	C	T	2.397e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18686002	X_18686002_SNP [dm3] X_18791969_SNP [dm6]	T	C	2.408e^-4	0.876	SYNONYMOUS_CODING Atg101 INTRON Pk17E
3R	26051533	3R_26051533_SNP [dm3] 3R_30225811_SNP [dm6]	G	A	2.444e^-4	0.876	INTERGENIC
2L	21942650	2L_21942650_SNP [dm3] 2L_21942650_SNP [dm6]	G	A	2.446e^-4	0.876	INTERGENIC
2L	10750426	2L_10750426_SNP [dm3] 2L_10750426_SNP [dm6]	A	T	2.450e^-4	0.876	INTRON CG17124
2L	10750428	2L_10750428_SNP [dm3] 2L_10750428_SNP [dm6]	A	C	2.450e^-4	0.876	INTRON CG17124
2L	10750430	2L_10750430_SNP [dm3] 2L_10750430_SNP [dm6]	A	T	2.450e^-4	0.876	INTRON CG17124
2L	10750432	2L_10750432_SNP [dm3] 2L_10750432_SNP [dm6]	A	C	2.450e^-4	0.876	INTRON CG17124
2L	10750434	2L_10750434_SNP [dm3] 2L_10750434_SNP [dm6]	A	G	2.450e^-4	0.876	INTRON CG17124
2L	10750435	2L_10750435_SNP [dm3] 2L_10750435_SNP [dm6]	A	G	2.450e^-4	0.876	INTRON CG17124
3R	24217371	3R_24217371_SNP [dm3] 3R_28391649_SNP [dm6]	C	A	2.463e^-4	0.876	INTERGENIC
2L	2764097	2L_2764097_SNP [dm3] 2L_2764097_SNP [dm6]	T	C	2.471e^-4	0.876	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
2L	7911802	2L_7911802_SNP [dm3] 2L_7911802_SNP [dm6]	A	C	2.473e^-4	0.876	INTRON Snoo
X	17673209	X_17673209_INS [dm3] X_17779176_INS [dm6]	T	TCGCCATAGAACT...	2.492e^-4	0.876	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673211	X_17673211_SNP [dm3] X_17779178_SNP [dm6]	T	G	2.492e^-4	0.876	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673222	X_17673222_SNP [dm3] X_17779189_SNP [dm6]	A	G	2.492e^-4	0.876	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673229	X_17673229_SNP [dm3] X_17779196_SNP [dm6]	C	T	2.492e^-4	0.876	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673231	X_17673231_SNP [dm3] X_17779198_SNP [dm6]	T	C	2.492e^-4	0.876	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673233	X_17673233_SNP [dm3] X_17779200_SNP [dm6]	A	G	2.492e^-4	0.876	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	15006732	2R_15006732_SNP [dm3] 2R_19119227_SNP [dm6]	A	T	2.504e^-4	0.876	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
2L	14387395	2L_14387395_DEL [dm3] 2L_14387395_DEL [dm6]	AGTAGGTG	A	2.511e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9821791	3R_9821791_SNP [dm3] 3R_13996069_SNP [dm6]	C	G	2.511e^-4	0.876	INTRON rdx
2R	15909211	2R_15909211_SNP [dm3] 2R_20021706_SNP [dm6]	G	A	2.515e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20530224	X_20530224_SNP [dm3] X_20659197_SNP [dm6]	A	G	2.516e^-4	0.876	INTRON Cyp6v1
2L	424367	2L_424367_SNP [dm3] 2L_424367_SNP [dm6]	G	A	2.521e^-4	0.876	SYNONYMOUS_CODING BBS8	TF binding site mE1_TFBS_chinmo
X	20875775	X_20875775_SNP [dm3] X_21004748_SNP [dm6]	T	C	2.522e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875815	X_20875815_SNP [dm3] X_21004788_SNP [dm6]	T	C	2.522e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	16848641	2R_16848641_SNP [dm3] 2R_20961136_SNP [dm6]	A	G	2.529e^-4	0.876	UPSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16848650	2R_16848650_SNP [dm3] 2R_20961145_SNP [dm6]	C	T	2.529e^-4	0.876	UPSTREAM hbn INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22870296	3R_22870296_SNP [dm3] 3R_27044574_SNP [dm6]	T	G	2.536e^-4	0.876	INTRON RYa-R
2R	15329455	2R_15329455_SNP [dm3] 2R_19441950_SNP [dm6]	T	G	2.547e^-4	0.876	UPSTREAM RpL11 DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	9299417	3R_9299417_SNP [dm3] 3R_13473695_SNP [dm6]	T	G	2.555e^-4	0.876	INTERGENIC
2L	862947	2L_862947_SNP [dm3] 2L_862947_SNP [dm6]	T	G	2.560e^-4	0.876	SYNONYMOUS_CODING aru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18741395	2R_18741395_SNP [dm3] 2R_22853872_SNP [dm6]	T	G	2.589e^-4	0.876	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18741492	2R_18741492_SNP [dm3] 2R_22853969_SNP [dm6]	G	A	2.589e^-4	0.876	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8045065	2L_8045065_SNP [dm3] 2L_8045065_SNP [dm6]	C	A	2.592e^-4	0.876	SYNONYMOUS_CODING CG7466
2L	6176837	2L_6176837_SNP [dm3] 2L_6176837_SNP [dm6]	C	T	2.628e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8045110	2L_8045110_SNP [dm3] 2L_8045110_SNP [dm6]	G	A	2.635e^-4	0.876	SYNONYMOUS_CODING CG7466
2L	15120602	2L_15120602_SNP [dm3] 2L_15120602_SNP [dm6]	G	T	2.642e^-4	0.876	EXON CR43853
2R	8508840	2R_8508840_SNP [dm3] 2R_12621335_SNP [dm6]	A	G	2.645e^-4	0.876	UTR_3_PRIME Galphaq DOWNSTREAM Galphaq
3L	13724195	3L_13724195_SNP [dm3] 3L_13731095_SNP [dm6]	C	T	2.648e^-4	0.876	INTRON bru-3
3L	12779776	3L_12779776_SNP [dm3] 3L_12786676_SNP [dm6]	C	T	2.648e^-4	0.876	SYNONYMOUS_CODING Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15361028	3R_15361028_SNP [dm3] 3R_19535306_SNP [dm6]	C	T	2.651e^-4	0.876	INTRON Dys	TF binding site mE1_TFBS_HSA
3R	9578273	3R_9578273_SNP [dm3] 3R_13752551_SNP [dm6]	G	A	2.653e^-4	0.876	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_sens
2L	2673453	2L_2673453_SNP [dm3] 2L_2673453_SNP [dm6]	T	C	2.674e^-4	0.876	INTERGENIC
3R	25836469	3R_25836469_SNP [dm3] 3R_30010747_SNP [dm6]	G	A	2.675e^-4	0.876	SYNONYMOUS_CODING CG7920 DOWNSTREAM Nlp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6379235	2R_6379235_SNP [dm3] 2R_10491730_SNP [dm6]	C	T	2.684e^-4	0.876	UTR_3_PRIME lola INTRON lola
2R	6508001	2R_6508001_SNP [dm3] 2R_10620496_SNP [dm6]	A	C	2.684e^-4	0.876	INTRON CG11883
2L	4427850	2L_4427850_SNP [dm3] 2L_4427850_SNP [dm6]	A	G	2.690e^-4	0.876	INTRON CG15431
2R	1634710	2R_1634710_SNP [dm3] 2R_5747205_SNP [dm6]	G	A	2.695e^-4	0.876	INTERGENIC	transposable element FlyBase
X	17673225	X_17673225_SNP [dm3] X_17779192_SNP [dm6]	C	T	2.695e^-4	0.876	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	2622009	3L_2622009_SNP [dm3] 3L_2622009_SNP [dm6]	A	T	2.698e^-4	0.876	INTRON Pxn
3R	12384171	3R_12384171_SNP [dm3] 3R_16558449_SNP [dm6]	C	T	2.724e^-4	0.876	INTRON CG42342
3R	5297393	3R_5297393_SNP [dm3] 3R_9471671_SNP [dm6]	C	T	2.741e^-4	0.876	SYNONYMOUS_CODING CG16779	TF binding site mE1_TFBS_chinmo
3L	8135663	3L_8135663_SNP [dm3] 3L_8142563_SNP [dm6]	C	A	2.745e^-4	0.876	DOWNSTREAM mus301 INTRON CG13676	TF binding site mE1_TFBS_cad
3L	8135666	3L_8135666_SNP [dm3] 3L_8142566_SNP [dm6]	C	A	2.745e^-4	0.876	DOWNSTREAM mus301 INTRON CG13676	TF binding site mE1_TFBS_cad
3L	8135693	3L_8135693_SNP [dm3] 3L_8142593_SNP [dm6]	T	C	2.745e^-4	0.876	DOWNSTREAM mus301 INTRON CG13676	TF binding site mE1_TFBS_cad
2L	10750437	2L_10750437_INS [dm3] 2L_10750437_INS [dm6]	A	AGA	2.746e^-4	0.876	INTRON CG17124
2R	12583221	2R_12583221_SNP [dm3] 2R_16695716_SNP [dm6]	C	T	2.746e^-4	0.876	INTRON CG30463
3R	16739498	3R_16739498_SNP [dm3] 3R_20913776_SNP [dm6]	T	C	2.753e^-4	0.876	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19886399	2R_19886399_SNP [dm3] 2R_23998876_SNP [dm6]	G	A	2.755e^-4	0.876	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
2L	639783	2L_639783_INS [dm3] 2L_639783_INS [dm6]	A	ACCAGCA	2.761e^-4	0.876	DOWNSTREAM ds INTERGENIC
3L	14911329	3L_14911329_SNP [dm3] 3L_14918229_SNP [dm6]	A	C	2.764e^-4	0.876	INTRON DCX-EMAP
2L	14180920	2L_14180920_SNP [dm3] 2L_14180920_SNP [dm6]	T	C	2.775e^-4	0.876	UPSTREAM CG43333 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14518615	2L_14518615_SNP [dm3] 2L_14518615_SNP [dm6]	C	T	2.788e^-4	0.876	UPSTREAM tRNA:G3:35Bb DOWNSTREAM tRNA:G3:35Bc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	15006933	2L_15006933_SNP [dm3] 2L_15006933_SNP [dm6]	G	A	2.788e^-4	0.876	SYNONYMOUS_CODING l_2_35Be UPSTREAM NC2beta DOWNSTREAM dyn-p25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7513568	2L_7513568_SNP [dm3] 2L_7513568_SNP [dm6]	G	C	2.788e^-4	0.876	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9790622	X_9790622_SNP [dm3] X_9896589_SNP [dm6]	G	A	2.795e^-4	0.876	INTRON CG15249
3R	9376198	3R_9376198_SNP [dm3] 3R_13550476_SNP [dm6]	C	T	2.826e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6220938	2L_6220938_SNP [dm3] 2L_6220938_SNP [dm6]	C	G	2.835e^-4	0.876	INTERGENIC
X	14260187	X_14260187_SNP [dm3] X_14366154_SNP [dm6]	A	G	2.836e^-4	0.876	INTRON dpr8
3R	7307321	3R_7307321_SNP [dm3] 3R_11481599_SNP [dm6]	G	C	2.844e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6536230	2L_6536230_SNP [dm3] 2L_6536230_SNP [dm6]	T	A	2.855e^-4	0.876	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14057920	3L_14057920_SNP [dm3] 3L_14064820_SNP [dm6]	C	G	2.861e^-4	0.876	INTRON CG32138
3L	14057926	3L_14057926_SNP [dm3] 3L_14064826_SNP [dm6]	T	G	2.861e^-4	0.876	INTRON CG32138
3L	14057938	3L_14057938_SNP [dm3] 3L_14064838_SNP [dm6]	G	C	2.861e^-4	0.876	INTRON CG32138
3L	14057944	3L_14057944_SNP [dm3] 3L_14064844_SNP [dm6]	C	A	2.861e^-4	0.876	INTRON CG32138
3R	9299382	3R_9299382_INS [dm3] 3R_13473660_INS [dm6]	G	GAGT	2.869e^-4	0.876	INTERGENIC
3R	9378973	3R_9378973_SNP [dm3] 3R_13553251_SNP [dm6]	G	T	2.883e^-4	0.876	INTERGENIC
3R	25834938	3R_25834938_SNP [dm3] 3R_30009216_SNP [dm6]	G	A	2.891e^-4	0.876	UPSTREAM CG7912 INTRON Nlp
3L	2669602	3L_2669602_SNP [dm3] 3L_2669602_SNP [dm6]	A	G	2.917e^-4	0.876	INTRON Fife
2R	11467748	2R_11467748_SNP [dm3] 2R_15580243_SNP [dm6]	A	G	2.917e^-4	0.876	INTERGENIC
2L	7207317	2L_7207317_SNP [dm3] 2L_7207317_SNP [dm6]	A	G	2.920e^-4	0.876	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
3L	5168209	3L_5168209_SNP [dm3] 3L_5175109_SNP [dm6]	T	G	2.921e^-4	0.876	INTRON shep
2L	14511685	2L_14511685_SNP [dm3] 2L_14511685_SNP [dm6]	T	A	2.922e^-4	0.876	EXON CR45693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14642089	3L_14642089_SNP [dm3] 3L_14648989_SNP [dm6]	A	T	2.929e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	10024580	X_10024580_SNP [dm3] X_10130547_SNP [dm6]	A	C	2.953e^-4	0.876	INTRON CR44894 & 1 other
3L	2610215	3L_2610215_SNP [dm3] 3L_2610215_SNP [dm6]	A	T	2.962e^-4	0.876	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_chinmo
3L	5168213	3L_5168213_SNP [dm3] 3L_5175113_SNP [dm6]	G	T	2.966e^-4	0.876	INTRON shep
3L	5168216	3L_5168216_SNP [dm3] 3L_5175116_SNP [dm6]	A	C	2.966e^-4	0.876	INTRON shep
X	1024505	X_1024505_SNP [dm3] X_1130472_SNP [dm6]	G	A	2.974e^-4	0.876	INTRON CG3655	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18249664	X_18249664_INS [dm3] X_18355631_INS [dm6]	G	GTAGGCGG	2.976e^-4	0.876	INTRON CG6123
2L	11971745	2L_11971745_SNP [dm3] 2L_11971745_SNP [dm6]	C	T	2.982e^-4	0.876	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11971906	2L_11971906_SNP [dm3] 2L_11971906_SNP [dm6]	A	T	2.982e^-4	0.876	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	14680486	3R_14680486_SNP [dm3] 3R_18854764_SNP [dm6]	A	C	2.998e^-4	0.876	INTERGENIC
X	3759709	X_3759709_SNP [dm3] X_3865676_SNP [dm6]	G	T	2.998e^-4	0.876	INTRON yin
2R	6450140	2R_6450140_SNP [dm3] 2R_10562635_SNP [dm6]	C	A	3.004e^-4	0.876	INTRON psq	TF binding site BDTNP1_TFBS_twi
X	15665110	X_15665110_SNP [dm3] X_15771077_SNP [dm6]	G	T	3.012e^-4	0.876	NON_SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
2L	15114292	2L_15114292_SNP [dm3] 2L_15114292_SNP [dm6]	C	T	3.013e^-4	0.876	SPLICE_SITE_REGION stc INTRON stc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	22995658	3L_22995658_SNP [dm3] 3L_23002558_SNP [dm6]	A	G	3.022e^-4	0.876	INTRON nrm
3R	16568503	3R_16568503_SNP [dm3] 3R_20742781_SNP [dm6]	G	A	3.036e^-4	0.876	DOWNSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad
3L	14911515	3L_14911515_SNP [dm3] 3L_14918415_SNP [dm6]	G	T	3.036e^-4	0.876	INTRON DCX-EMAP
X	18807060	X_18807060_SNP [dm3] X_18913027_SNP [dm6]	A	G	3.052e^-4	0.876	DOWNSTREAM CR44708 INTERGENIC
3L	2849756	3L_2849756_SNP [dm3] 3L_2849756_SNP [dm6]	A	T	3.054e^-4	0.876	INTRON CG43444	TF binding site mE1_TFBS_cad
2R	16115203	2R_16115203_SNP [dm3] 2R_20227698_SNP [dm6]	T	A	3.062e^-4	0.876	INTERGENIC
2R	13993135	2R_13993135_SNP [dm3] 2R_18105630_SNP [dm6]	T	C	3.069e^-4	0.876	INTRON CG5756
2R	19685444	2R_19685444_SNP [dm3] 2R_23797921_SNP [dm6]	C	T	3.070e^-4	0.876	UTR_5_PRIME CG9850	TF binding site mE1_TFBS_HSA
2R	10149116	2R_10149116_SNP [dm3] 2R_14261611_SNP [dm6]	C	A	3.096e^-4	0.876	UTR_3_PRIME CG8547 DOWNSTREAM beta4GalNAcTA
3L	18128850	3L_18128850_SNP [dm3] 3L_18135750_SNP [dm6]	G	A	3.096e^-4	0.876	DOWNSTREAM CR44669 INTERGENIC
3L	14642038	3L_14642038_SNP [dm3] 3L_14648938_SNP [dm6]	T	A	3.111e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20875794	X_20875794_SNP [dm3] X_21004767_SNP [dm6]	T	A	3.114e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	7834801	3L_7834801_SNP [dm3] 3L_7841701_SNP [dm6]	G	A	3.123e^-4	0.876	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	15493031	3L_15493031_SNP [dm3] 3L_15499931_SNP [dm6]	C	T	3.124e^-4	0.876	INTRON CG7275	TF binding site mE1_TFBS_sens
3L	14641921	3L_14641921_SNP [dm3] 3L_14648821_SNP [dm6]	A	G	3.163e^-4	0.876	INTRON dlp	TF binding site mE1_TFBS_HSA
3L	4740113	3L_4740113_SNP [dm3] 3L_4740113_SNP [dm6]	G	T	3.177e^-4	0.876	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14302410	X_14302410_SNP [dm3] X_14408377_SNP [dm6]	A	T	3.177e^-4	0.876	INTRON dpr8
2L	7821407	2L_7821407_SNP [dm3] 2L_7821407_SNP [dm6]	G	A	3.183e^-4	0.876	UPSTREAM CG7115 & 1 other DOWNSTREAM LanB1 INTRON CG7115	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA
3R	24928007	3R_24928007_SNP [dm3] 3R_29102285_SNP [dm6]	G	A	3.200e^-4	0.876	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6594064	X_6594064_SNP [dm3] X_6700031_SNP [dm6]	A	C	3.211e^-4	0.876	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12551476	2R_12551476_SNP [dm3] 2R_16663971_SNP [dm6]	A	G	3.214e^-4	0.876	UTR_5_PRIME Picot UPSTREAM Picot
3L	5956442	3L_5956442_SNP [dm3] 3L_5963342_SNP [dm6]	G	C	3.226e^-4	0.876	INTERGENIC
3L	8164454	3L_8164454_SNP [dm3] 3L_8171354_SNP [dm6]	A	G	3.228e^-4	0.876	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi
2L	8309062	2L_8309062_SNP [dm3] 2L_8309062_SNP [dm6]	A	T	3.235e^-4	0.876	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8309068	2L_8309068_SNP [dm3] 2L_8309068_SNP [dm6]	C	T	3.235e^-4	0.876	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	14673733	3R_14673733_SNP [dm3] 3R_18848011_SNP [dm6]	A	G	3.249e^-4	0.876	SYNONYMOUS_CODING CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25220540	3R_25220540_SNP [dm3] 3R_29394818_SNP [dm6]	C	T	3.257e^-4	0.876	INTRON Ptp99A
2L	7821008	2L_7821008_SNP [dm3] 2L_7821008_SNP [dm6]	A	T	3.262e^-4	0.876	UPSTREAM CG7115 DOWNSTREAM CR45008 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15605230	3L_15605230_SNP [dm3] 3L_15612130_SNP [dm6]	G	T	3.267e^-4	0.876	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449
3L	15605236	3L_15605236_SNP [dm3] 3L_15612136_SNP [dm6]	C	T	3.267e^-4	0.876	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449
2L	3629942	2L_3629942_SNP [dm3] 2L_3629942_SNP [dm6]	C	T	3.284e^-4	0.876	INTRON for
3L	12290341	3L_12290341_INS [dm3] 3L_12297241_INS [dm6]	T	TCCCAGTCCACTTT...	3.314e^-4	0.876	INTERGENIC
2L	16496859	2L_16496859_SNP [dm3] 2L_16496859_SNP [dm6]	T	A	3.324e^-4	0.876	UTR_5_PRIME Tpr2 INTRON Tpr2
2L	14722985	2L_14722985_SNP [dm3] 2L_14722985_SNP [dm6]	C	T	3.332e^-4	0.876	INTERGENIC
2L	14723070	2L_14723070_SNP [dm3] 2L_14723070_SNP [dm6]	T	G	3.332e^-4	0.876	INTERGENIC
3R	7307312	3R_7307312_SNP [dm3] 3R_11481590_SNP [dm6]	C	T	3.333e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14723026	2L_14723026_SNP [dm3] 2L_14723026_SNP [dm6]	C	A	3.336e^-4	0.876	INTERGENIC
3R	24925447	3R_24925447_SNP [dm3] 3R_29099725_SNP [dm6]	G	T	3.374e^-4	0.876	NON_SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14680481	3R_14680481_INS [dm3] 3R_18854759_INS [dm6]	T	GATCTTAGAAAAC...	3.377e^-4	0.876	INTERGENIC
3R	9962850	3R_9962850_SNP [dm3] 3R_14137128_SNP [dm6]	A	G	3.383e^-4	0.876	INTERGENIC
3R	9377351	3R_9377351_SNP [dm3] 3R_13551629_SNP [dm6]	T	G	3.383e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14228494	3L_14228494_SNP [dm3] 3L_14235394_SNP [dm6]	T	C	3.397e^-4	0.876	SYNONYMOUS_CODING CG34244 DOWNSTREAM CG7924	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24869189	3R_24869189_SNP [dm3] 3R_29043467_SNP [dm6]	A	C	3.408e^-4	0.876	INTRON Pkc98E
2R	17279522	2R_17279522_SNP [dm3] 2R_21392017_SNP [dm6]	A	T	3.409e^-4	0.876	DOWNSTREAM Sdc INTRON Acox57D-d
3R	25365840	3R_25365840_SNP [dm3] 3R_29540118_SNP [dm6]	T	C	3.409e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1650899	2L_1650899_DEL [dm3] 2L_1650899_DEL [dm6]	CC	C	3.411e^-4	0.876	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7329612	2L_7329612_SNP [dm3] 2L_7329612_SNP [dm6]	C	G	3.418e^-4	0.876	UPSTREAM CR45304 INTERGENIC
3R	9591724	3R_9591724_SNP [dm3] 3R_13766002_SNP [dm6]	T	A	3.421e^-4	0.876	NON_SYNONYMOUS_CODING CG9312
3L	9088728	3L_9088728_SNP [dm3] 3L_9095628_SNP [dm6]	C	T	3.423e^-4	0.876	DOWNSTREAM CG32032 INTERGENIC
2R	11874867	2R_11874867_SNP [dm3] 2R_15987362_SNP [dm6]	T	G	3.435e^-4	0.876	UPSTREAM CR45021 & 1 other INTRON Strn-Mlck
X	6593783	X_6593783_SNP [dm3] X_6699750_SNP [dm6]	T	A	3.435e^-4	0.876	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6593967	X_6593967_SNP [dm3] X_6699934_SNP [dm6]	G	A	3.435e^-4	0.876	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7127288	X_7127288_SNP [dm3] X_7233255_SNP [dm6]	G	A	3.438e^-4	0.876	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
X	7802590	X_7802590_SNP [dm3] X_7908557_SNP [dm6]	T	A	3.451e^-4	0.876	UPSTREAM dpr14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21942647	2L_21942647_SNP [dm3] 2L_21942647_SNP [dm6]	G	T	3.465e^-4	0.876	INTERGENIC
3R	14423644	3R_14423644_SNP [dm3] 3R_18597922_SNP [dm6]	G	C	3.472e^-4	0.876	UPSTREAM CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11059590	2R_11059590_SNP [dm3] 2R_15172085_SNP [dm6]	T	C	3.491e^-4	0.876	INTRON igl
2R	6508603	2R_6508603_SNP [dm3] 2R_10621098_SNP [dm6]	T	G	3.491e^-4	0.876	INTRON CG11883
3R	7303305	3R_7303305_SNP [dm3] 3R_11477583_SNP [dm6]	T	G	3.501e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5168192	3L_5168192_SNP [dm3] 3L_5175092_SNP [dm6]	T	A	3.525e^-4	0.876	INTRON shep
3L	8209126	3L_8209126_SNP [dm3] 3L_8216026_SNP [dm6]	C	A	3.536e^-4	0.876	UTR_3_PRIME CG8012 DOWNSTREAM CG8012
2L	14347006	2L_14347006_SNP [dm3] 2L_14347006_SNP [dm6]	A	T	3.538e^-4	0.876	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
2L	15113348	2L_15113348_SNP [dm3] 2L_15113348_SNP [dm6]	T	C	3.574e^-4	0.876	UPSTREAM stc DOWNSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	15113352	2L_15113352_SNP [dm3] 2L_15113352_SNP [dm6]	A	G	3.574e^-4	0.876	UPSTREAM stc DOWNSTREAM CG15269 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
2L	7946118	2L_7946118_SNP [dm3] 2L_7946118_SNP [dm6]	T	G	3.581e^-4	0.876	INTRON Snoo
3L	2627277	3L_2627277_SNP [dm3] 3L_2627277_SNP [dm6]	A	G	3.602e^-4	0.876	INTRON Pxn
2L	8230692	2L_8230692_SNP [dm3] 2L_8230692_SNP [dm6]	T	G	3.602e^-4	0.876	UPSTREAM Pvr INTRON Pvr
2R	9849715	2R_9849715_INS [dm3] 2R_13962210_INS [dm6]	T	TGAT	3.618e^-4	0.876	INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14518699	2L_14518699_SNP [dm3] 2L_14518699_SNP [dm6]	T	A	3.622e^-4	0.876	UPSTREAM tRNA:G3:35Bb & 1 other DOWNSTREAM tRNA:G3:35Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	14518723	2L_14518723_SNP [dm3] 2L_14518723_SNP [dm6]	T	A	3.622e^-4	0.876	UPSTREAM tRNA:G3:35Bb & 1 other DOWNSTREAM tRNA:G3:35Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	14518785	2L_14518785_SNP [dm3] 2L_14518785_SNP [dm6]	C	G	3.622e^-4	0.876	UPSTREAM tRNA:G3:35Bb & 1 other DOWNSTREAM tRNA:G3:35Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	14518875	2L_14518875_SNP [dm3] 2L_14518875_SNP [dm6]	G	C	3.622e^-4	0.876	UPSTREAM tRNA:G3:35Bb & 1 other DOWNSTREAM tRNA:G3:35Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	12393729	3L_12393729_SNP [dm3] 3L_12400629_SNP [dm6]	G	C	3.622e^-4	0.876	SYNONYMOUS_CODING Smyd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9896967	3L_9896967_DEL [dm3] 3L_9903867_DEL [dm6]	ATTTTAAGTTCTA...	A	3.622e^-4	0.876	DOWNSTREAM nudE INTERGENIC
3R	10002439	3R_10002439_SNP [dm3] 3R_14176717_SNP [dm6]	G	T	3.622e^-4	0.876	UTR_3_PRIME Dop1R1 DOWNSTREAM Dop1R1
X	16196007	X_16196007_SNP [dm3] X_16301974_SNP [dm6]	T	C	3.622e^-4	0.876	INTRON CG3632	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20877205	X_20877205_SNP [dm3] X_21006178_SNP [dm6]	G	T	3.623e^-4	0.876	INTERGENIC	transposable element FlyBase
3R	7575289	3R_7575289_DEL [dm3] 3R_11749567_DEL [dm6]	AGCTTTAAGTATAT...	A	3.638e^-4	0.876	UPSTREAM CG6923 & 1 other INTRON CG6923	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	6537601	X_6537601_SNP [dm3] X_6643568_SNP [dm6]	G	A	3.665e^-4	0.876	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7569814	2R_7569814_SNP [dm3] 2R_11682309_SNP [dm6]	T	A	3.680e^-4	0.876	INTRON Buffy
3R	25365859	3R_25365859_SNP [dm3] 3R_29540137_SNP [dm6]	T	A	3.683e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16317013	2R_16317013_SNP [dm3] 2R_20429508_SNP [dm6]	A	G	3.688e^-4	0.876	UTR_5_PRIME CG12484
X	13964945	X_13964945_INS [dm3] X_14070912_INS [dm6]	A	AA	3.690e^-4	0.876	DOWNSTREAM tRNA:S474:12Eh INTERGENIC
3L	7232323	3L_7232323_SNP [dm3] 3L_7239223_SNP [dm6]	G	T	3.692e^-4	0.876	NON_SYNONYMOUS_CODING BHD DOWNSTREAM RpL18	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	927064	3R_927064_SNP [dm3] 3R_5101342_SNP [dm6]	G	T	3.730e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14518798	2L_14518798_SNP [dm3] 2L_14518798_SNP [dm6]	T	A	3.733e^-4	0.876	UPSTREAM tRNA:G3:35Bb & 1 other DOWNSTREAM tRNA:G3:35Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	15167984	3R_15167984_SNP [dm3] 3R_19342262_SNP [dm6]	T	C	3.733e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	822133	3R_822133_SNP [dm3] 3R_4996411_SNP [dm6]	T	C	3.742e^-4	0.876	INTRON CG2022	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2588955	3L_2588955_SNP [dm3] 3L_2588955_SNP [dm6]	A	G	3.751e^-4	0.876	UPSTREAM dos DOWNSTREAM RpL8 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	12778968	3L_12778968_SNP [dm3] 3L_12785868_SNP [dm6]	T	C	3.770e^-4	0.876	SPLICE_SITE_REGION Atg1 INTRON Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8782901	2R_8782901_SNP [dm3] 2R_12895396_SNP [dm6]	A	G	3.815e^-4	0.876	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8045233	2L_8045233_SNP [dm3] 2L_8045233_SNP [dm6]	G	A	3.841e^-4	0.876	SYNONYMOUS_CODING CG7466
2L	8045236	2L_8045236_SNP [dm3] 2L_8045236_SNP [dm6]	G	A	3.841e^-4	0.876	SYNONYMOUS_CODING CG7466
3L	14642055	3L_14642055_SNP [dm3] 3L_14648955_SNP [dm6]	A	T	3.860e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642058	3L_14642058_SNP [dm3] 3L_14648958_SNP [dm6]	G	A	3.860e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642078	3L_14642078_MNP [dm3] 3L_14648978_MNP [dm6]	GGG	AAA	3.860e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14680558	3R_14680558_SNP [dm3] 3R_18854836_SNP [dm6]	C	T	3.893e^-4	0.876	INTERGENIC
3R	14680571	3R_14680571_SNP [dm3] 3R_18854849_SNP [dm6]	T	A	3.893e^-4	0.876	INTERGENIC
2L	14828725	2L_14828725_SNP [dm3] 2L_14828725_SNP [dm6]	C	T	3.917e^-4	0.876	INTERGENIC
2L	14753114	2L_14753114_SNP [dm3] 2L_14753114_SNP [dm6]	T	A	3.921e^-4	0.876	INTERGENIC
X	20876615	X_20876615_SNP [dm3] X_21005588_SNP [dm6]	T	C	3.934e^-4	0.876	INTERGENIC
2L	1067665	2L_1067665_SNP [dm3] 2L_1067665_SNP [dm6]	G	A	3.941e^-4	0.876	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	2849639	3L_2849639_DEL [dm3] 3L_2849639_DEL [dm6]	CACTTC	C	3.946e^-4	0.876	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	7984136	3L_7984136_SNP [dm3] 3L_7991036_SNP [dm6]	T	C	3.950e^-4	0.876	INTRON nmo	TF binding site mE1_TFBS_cnc
2L	10750460	2L_10750460_SNP [dm3] 2L_10750460_SNP [dm6]	A	G	3.967e^-4	0.876	INTRON CG17124
X	16372414	X_16372414_SNP [dm3] X_16478381_SNP [dm6]	A	G	4.003e^-4	0.876	INTRON para
X	14400695	X_14400695_SNP [dm3] X_14506662_SNP [dm6]	G	C	4.010e^-4	0.876	INTERGENIC
2R	10893988	2R_10893988_SNP [dm3] 2R_15006483_SNP [dm6]	T	C	4.015e^-4	0.876	INTERGENIC
X	13460496	X_13460496_SNP [dm3] X_13566463_SNP [dm6]	A	C	4.027e^-4	0.876	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
3R	12656945	3R_12656945_SNP [dm3] 3R_16831223_SNP [dm6]	A	G	4.029e^-4	0.876	EXON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
X	2312229	X_2312229_SNP [dm3] X_2418196_SNP [dm6]	A	G	4.052e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9954389	2L_9954389_SNP [dm3] 2L_9954389_SNP [dm6]	G	A	4.073e^-4	0.876	UTR_5_PRIME CG4709 UPSTREAM CG4709 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2L	9534662	2L_9534662_SNP [dm3] 2L_9534662_SNP [dm6]	G	T	4.086e^-4	0.876	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo
2L	9534668	2L_9534668_SNP [dm3] 2L_9534668_SNP [dm6]	A	G	4.086e^-4	0.876	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo
X	14400705	X_14400705_SNP [dm3] X_14506672_SNP [dm6]	T	G	4.095e^-4	0.876	INTERGENIC
X	14400707	X_14400707_SNP [dm3] X_14506674_SNP [dm6]	G	A	4.095e^-4	0.876	INTERGENIC
2L	13441488	2L_13441488_SNP [dm3] 2L_13441488_SNP [dm6]	A	C	4.107e^-4	0.876	INTRON CG42784 EXON CR45683
3R	9751978	3R_9751978_SNP [dm3] 3R_13926256_SNP [dm6]	A	G	4.110e^-4	0.876	INTERGENIC
2R	15566523	2R_15566523_SNP [dm3] 2R_19679018_SNP [dm6]	G	T	4.124e^-4	0.876	INTERGENIC
X	9386074	X_9386074_SNP [dm3] X_9492041_SNP [dm6]	C	T	4.127e^-4	0.876	INTRON mgl
2R	17939476	2R_17939476_SNP [dm3] 2R_22051971_SNP [dm6]	G	C	4.127e^-4	0.876	INTERGENIC
3L	16468208	3L_16468208_SNP [dm3] 3L_16475108_SNP [dm6]	T	G	4.133e^-4	0.876	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13949278	3L_13949278_SNP [dm3] 3L_13956178_SNP [dm6]	A	C	4.149e^-4	0.876	INTRON CG32137
3R	16305962	3R_16305962_SNP [dm3] 3R_20480240_SNP [dm6]	A	G	4.149e^-4	0.876	INTRON Gfrl
2L	12471705	2L_12471705_DEL [dm3] 2L_12471705_DEL [dm6]	TGC	T	4.150e^-4	0.876	INTRON bun
X	17673226	X_17673226_SNP [dm3] X_17779193_SNP [dm6]	A	C	4.162e^-4	0.876	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	8926803	3L_8926803_SNP [dm3] 3L_8933703_SNP [dm6]	T	C	4.167e^-4	0.876	SYNONYMOUS_CODING CG43783
X	5844435	X_5844435_INS [dm3] X_5950402_INS [dm6]	G	GCTA	4.178e^-4	0.876	CODON_INSERTION CG32755 DOWNSTREAM CG6041	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15605347	3L_15605347_SNP [dm3] 3L_15612247_SNP [dm6]	C	G	4.182e^-4	0.876	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449 DOWNSTREAM comm3
2R	19889499	2R_19889499_SNP [dm3] 2R_24001976_SNP [dm6]	G	A	4.184e^-4	0.876	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	497444	X_497444_SNP [dm3] X_603411_SNP [dm6]	C	T	4.185e^-4	0.876	INTRON CG13366
2R	11471496	2R_11471496_SNP [dm3] 2R_15583991_SNP [dm6]	T	A	4.189e^-4	0.876	INTERGENIC
2L	8081889	2L_8081889_SNP [dm3] 2L_8081889_SNP [dm6]	C	A	4.191e^-4	0.876	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13983795	2L_13983795_SNP [dm3] 2L_13983795_SNP [dm6]	T	G	4.192e^-4	0.876	SPLICE_SITE_REGION rk DOWNSTREAM NimC2 INTRON rk	TF binding site mE1_TFBS_chinmo
2L	492383	2L_492383_SNP [dm3] 2L_492383_SNP [dm6]	C	T	4.204e^-4	0.876	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	9048664	3R_9048664_SNP [dm3] 3R_13222942_SNP [dm6]	A	C	4.244e^-4	0.876	DOWNSTREAM Ace INTERGENIC
X	14375894	X_14375894_SNP [dm3] X_14481861_SNP [dm6]	A	T	4.251e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5802662	2L_5802662_SNP [dm3] 2L_5802662_SNP [dm6]	G	T	4.260e^-4	0.876	SYNONYMOUS_CODING CG7239 UPSTREAM CG14005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15103038	2L_15103038_SNP [dm3] 2L_15103038_SNP [dm6]	A	T	4.265e^-4	0.876	INTERGENIC
3R	26051540	3R_26051540_DEL [dm3] 3R_30225818_DEL [dm6]	TAATAG	T	4.277e^-4	0.876	INTERGENIC
3R	18358064	3R_18358064_SNP [dm3] 3R_22532342_SNP [dm6]	C	G	4.297e^-4	0.876	UTR_3_PRIME CG5326 UPSTREAM CG33093
3R	9365456	3R_9365456_SNP [dm3] 3R_13539734_SNP [dm6]	G	A	4.301e^-4	0.876	INTERGENIC
3L	1287330	3L_1287330_SNP [dm3] 3L_1287330_SNP [dm6]	T	A	4.305e^-4	0.876	INTRON CG32333
2R	15206882	2R_15206882_SNP [dm3] 2R_19319377_SNP [dm6]	A	G	4.310e^-4	0.876	INTRON Rgk1
2R	15207582	2R_15207582_SNP [dm3] 2R_19320077_SNP [dm6]	G	A	4.310e^-4	0.876	INTRON Rgk1
2R	15207761	2R_15207761_SNP [dm3] 2R_19320256_SNP [dm6]	T	C	4.310e^-4	0.876	INTRON Rgk1
2R	15209207	2R_15209207_SNP [dm3] 2R_19321702_SNP [dm6]	C	T	4.310e^-4	0.876	INTRON Rgk1	TF binding site mE1_TFBS_inv
2R	15209212	2R_15209212_SNP [dm3] 2R_19321707_SNP [dm6]	C	G	4.310e^-4	0.876	INTRON Rgk1	TF binding site mE1_TFBS_inv
2R	15209259	2R_15209259_SNP [dm3] 2R_19321754_SNP [dm6]	G	T	4.310e^-4	0.876	INTRON Rgk1	TF binding site mE1_TFBS_inv
3R	24807539	3R_24807539_INS [dm3] 3R_28981817_INS [dm6]	A	ACA	4.312e^-4	0.876	INTERGENIC
2L	3715387	2L_3715387_SNP [dm3] 2L_3715387_SNP [dm6]	T	C	4.317e^-4	0.876	SYNONYMOUS_CODING CG2818	TF binding site mE1_TFBS_sens
2L	3715399	2L_3715399_SNP [dm3] 2L_3715399_SNP [dm6]	C	A	4.317e^-4	0.876	SYNONYMOUS_CODING CG2818	TF binding site mE1_TFBS_sens
3L	2471326	3L_2471326_SNP [dm3] 3L_2471326_SNP [dm6]	C	T	4.326e^-4	0.876	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	10809083	X_10809083_SNP [dm3] X_10915050_SNP [dm6]	G	A	4.343e^-4	0.876	INTRON CG43901
2R	8896095	2R_8896095_SNP [dm3] 2R_13008590_SNP [dm6]	C	A	4.344e^-4	0.876	DOWNSTREAM Su_z_2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24289988	3R_24289988_SNP [dm3] 3R_28464266_SNP [dm6]	C	T	4.345e^-4	0.876	INTRON beat-VI
2L	11191010	2L_11191010_SNP [dm3] 2L_11191010_SNP [dm6]	G	C	4.346e^-4	0.876	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1236696	2L_1236696_SNP [dm3] 2L_1236696_SNP [dm6]	C	G	4.346e^-4	0.876	INTERGENIC
2L	15431797	2L_15431797_SNP [dm3] 2L_15431797_SNP [dm6]	C	T	4.346e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7742647	2L_7742647_SNP [dm3] 2L_7742647_SNP [dm6]	A	G	4.346e^-4	0.876	INTERGENIC
2L	7742855	2L_7742855_SNP [dm3] 2L_7742855_SNP [dm6]	T	C	4.346e^-4	0.876	DOWNSTREAM CG7214 INTERGENIC
2R	13597454	2R_13597454_SNP [dm3] 2R_17709949_SNP [dm6]	A	T	4.346e^-4	0.876	UPSTREAM CG6424 INTRON CG6424
2R	17035200	2R_17035200_SNP [dm3] 2R_21147695_SNP [dm6]	C	T	4.346e^-4	0.876	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
2R	18394879	2R_18394879_SNP [dm3] 2R_22507374_SNP [dm6]	C	T	4.346e^-4	0.876	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4083072	3L_4083072_SNP [dm3] 3L_4083072_SNP [dm6]	A	C	4.346e^-4	0.876	INTRON Gad1
3R	16891835	3R_16891835_SNP [dm3] 3R_21066113_SNP [dm6]	C	T	4.346e^-4	0.876	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	4127208	3R_4127208_SNP [dm3] 3R_8301486_SNP [dm6]	A	G	4.346e^-4	0.876	UTR_5_PRIME mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4127242	3R_4127242_SNP [dm3] 3R_8301520_SNP [dm6]	C	A	4.346e^-4	0.876	SYNONYMOUS_CODING mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4156237	3R_4156237_SNP [dm3] 3R_8330515_SNP [dm6]	A	C	4.346e^-4	0.876	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14302776	X_14302776_SNP [dm3] X_14408743_SNP [dm6]	C	T	4.346e^-4	0.876	INTRON dpr8
3L	18159493	3L_18159493_SNP [dm3] 3L_18166393_SNP [dm6]	A	T	4.368e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25024432	3R_25024432_SNP [dm3] 3R_29198710_SNP [dm6]	A	C	4.376e^-4	0.876	INTRON CG14515
3R	24843029	3R_24843029_DEL [dm3] 3R_29017307_DEL [dm6]	CATAC	C	4.379e^-4	0.876	INTRON wat
3L	16251871	3L_16251871_SNP [dm3] 3L_16258771_SNP [dm6]	T	C	4.379e^-4	0.876	DOWNSTREAM CG13053 INTERGENIC
3R	5644093	3R_5644093_SNP [dm3] 3R_9818371_SNP [dm6]	G	A	4.379e^-4	0.876	UTR_5_PRIME CG9459 DOWNSTREAM CG9458
3L	13165040	3L_13165040_SNP [dm3] 3L_13171940_SNP [dm6]	C	T	4.393e^-4	0.876	INTERGENIC
2L	2632065	2L_2632065_SNP [dm3] 2L_2632065_SNP [dm6]	G	T	4.399e^-4	0.876	INTERGENIC
2L	1112479	2L_1112479_SNP [dm3] 2L_1112479_SNP [dm6]	T	C	4.403e^-4	0.876	UPSTREAM CG14340 INTRON CG14339
2R	12766285	2R_12766285_SNP [dm3] 2R_16878780_SNP [dm6]	T	A	4.408e^-4	0.876	INTRON CG8910
2L	11638444	2L_11638444_SNP [dm3] 2L_11638444_SNP [dm6]	C	A	4.409e^-4	0.876	INTERGENIC
2L	492331	2L_492331_SNP [dm3] 2L_492331_SNP [dm6]	A	T	4.430e^-4	0.876	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	493550	2L_493550_SNP [dm3] 2L_493550_SNP [dm6]	G	A	4.430e^-4	0.876	INTRON ush
2L	5954899	2L_5954899_SNP [dm3] 2L_5954899_SNP [dm6]	G	A	4.430e^-4	0.876	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
X	17304679	X_17304679_DEL [dm3] X_17410646_DEL [dm6]	CC	C	4.430e^-4	0.876	INTERGENIC
2L	19533250	2L_19533250_SNP [dm3] 2L_19533250_SNP [dm6]	G	A	4.443e^-4	0.876	UPSTREAM CG33116 DOWNSTREAM CG10137 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	13982250	2L_13982250_SNP [dm3] 2L_13982250_SNP [dm6]	T	C	4.451e^-4	0.876	SYNONYMOUS_CODING NimC2 DOWNSTREAM rk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25333142	3R_25333142_SNP [dm3] 3R_29507420_SNP [dm6]	G	T	4.453e^-4	0.876	INTERGENIC
3R	9151848	3R_9151848_SNP [dm3] 3R_13326126_SNP [dm6]	A	G	4.487e^-4	0.876	INTERGENIC
3R	9537229	3R_9537229_SNP [dm3] 3R_13711507_SNP [dm6]	T	C	4.508e^-4	0.876	SYNONYMOUS_CODING primo-2 START_GAINED primo-1 UTR_5_PRIME primo-1 UPSTREAM primo-1 DOWNSTREAM CR34044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11707989	2R_11707989_SNP [dm3] 2R_15820484_SNP [dm6]	T	A	4.559e^-4	0.876	INTRON tun & 1 other
X	19896455	X_19896455_SNP [dm3] X_20002422_SNP [dm6]	G	A	4.563e^-4	0.876	UPSTREAM CG17003 INTERGENIC
3L	2664117	3L_2664117_SNP [dm3] 3L_2664117_SNP [dm6]	G	A	4.581e^-4	0.876	DOWNSTREAM CG33234 INTRON Fife
2L	12516165	2L_12516165_SNP [dm3] 2L_12516165_SNP [dm6]	A	T	4.594e^-4	0.876	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	13500385	2R_13500385_DEL [dm3] 2R_17612880_DEL [dm6]	TG	T	4.595e^-4	0.876	INTRON CG10936
2L	1279311	2L_1279311_SNP [dm3] 2L_1279311_SNP [dm6]	T	C	4.598e^-4	0.876	INTRON robo3
X	14400544	X_14400544_SNP [dm3] X_14506511_SNP [dm6]	G	C	4.628e^-4	0.876	INTERGENIC
X	14400547	X_14400547_SNP [dm3] X_14506514_SNP [dm6]	A	T	4.628e^-4	0.876	INTERGENIC
3R	9963368	3R_9963368_SNP [dm3] 3R_14137646_SNP [dm6]	T	A	4.635e^-4	0.876	INTERGENIC
X	12219963	X_12219963_SNP [dm3] X_12325930_SNP [dm6]	G	T	4.656e^-4	0.876	INTRON Ten-a
2R	19886495	2R_19886495_SNP [dm3] 2R_23998972_SNP [dm6]	C	T	4.658e^-4	0.876	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
2L	15120594	2L_15120594_SNP [dm3] 2L_15120594_SNP [dm6]	T	A	4.667e^-4	0.876	EXON CR43853
2R	17947599	2R_17947599_SNP [dm3] 2R_22060094_SNP [dm6]	A	T	4.676e^-4	0.876	UPSTREAM Snp INTRON CG13501	TF binding site BDTNP1_TFBS_dl
3L	10729744	3L_10729744_INS [dm3] 3L_10736644_INS [dm6]	T	TT	4.702e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12296780	3L_12296780_SNP [dm3] 3L_12303680_SNP [dm6]	T	A	4.704e^-4	0.876	INTERGENIC
X	20876850	X_20876850_SNP [dm3] X_21005823_SNP [dm6]	A	C	4.708e^-4	0.876	INTERGENIC
2L	5078905	2L_5078905_SNP [dm3] 2L_5078905_SNP [dm6]	A	G	4.731e^-4	0.876	SYNONYMOUS_CODING pgant5
3L	16891960	3L_16891960_SNP [dm3] 3L_16898860_SNP [dm6]	T	C	4.733e^-4	0.876	UPSTREAM Lmpt INTRON Lmpt
2L	15120599	2L_15120599_SNP [dm3] 2L_15120599_SNP [dm6]	T	C	4.734e^-4	0.876	EXON CR43853
2L	14001860	2L_14001860_SNP [dm3] 2L_14001860_SNP [dm6]	A	G	4.748e^-4	0.876	UPSTREAM rk INTERGENIC
2L	1856136	2L_1856136_SNP [dm3] 2L_1856136_SNP [dm6]	A	G	4.777e^-4	0.876	INTRON wry
X	17841186	X_17841186_SNP [dm3] X_17947153_SNP [dm6]	G	C	4.779e^-4	0.876	UTR_3_PRIME Sh INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20876983	X_20876983_SNP [dm3] X_21005956_SNP [dm6]	A	C	4.783e^-4	0.876	INTERGENIC
X	20879940	X_20879940_SNP [dm3] X_21008913_SNP [dm6]	G	T	4.783e^-4	0.876	INTERGENIC
2R	17884521	2R_17884521_SNP [dm3] 2R_21997016_SNP [dm6]	A	G	4.790e^-4	0.876	INTRON CG34370
3L	14863754	3L_14863754_SNP [dm3] 3L_14870654_SNP [dm6]	A	C	4.803e^-4	0.876	NON_SYNONYMOUS_CODING CG17839	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20528986	X_20528986_SNP [dm3] X_20657959_SNP [dm6]	G	C	4.819e^-4	0.876	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
2R	15207768	2R_15207768_SNP [dm3] 2R_19320263_SNP [dm6]	A	G	4.828e^-4	0.876	INTRON Rgk1
3L	4098882	3L_4098882_SNP [dm3] 3L_4098882_SNP [dm6]	A	G	4.830e^-4	0.876	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	13460412	X_13460412_SNP [dm3] X_13566379_SNP [dm6]	T	C	4.833e^-4	0.876	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
2L	13974306	2L_13974306_SNP [dm3] 2L_13974306_SNP [dm6]	A	G	4.834e^-4	0.876	NON_SYNONYMOUS_CODING NimC1
2L	1098323	2L_1098323_SNP [dm3] 2L_1098323_SNP [dm6]	T	C	4.839e^-4	0.876	INTRON CG4629
2L	7829598	2L_7829598_SNP [dm3] 2L_7829598_SNP [dm6]	C	T	4.856e^-4	0.876	INTRON mts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17150709	2R_17150709_SNP [dm3] 2R_21263204_SNP [dm6]	C	T	4.856e^-4	0.876	INTRON Rgk3
2L	15632177	2L_15632177_SNP [dm3] 2L_15632177_SNP [dm6]	T	A	4.858e^-4	0.876	UTR_3_PRIME CG18480
2L	15632228	2L_15632228_SNP [dm3] 2L_15632228_SNP [dm6]	T	A	4.858e^-4	0.876	UTR_3_PRIME CG18480
2R	17118424	2R_17118424_INS [dm3] 2R_21230919_INS [dm6]	T	TTC	4.891e^-4	0.876	INTRON ASPP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16252981	2L_16252981_INS [dm3] 2L_16252981_INS [dm6]	C	CGTA	4.896e^-4	0.876	INTRON PRL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19087400	3R_19087400_SNP [dm3] 3R_23261678_SNP [dm6]	C	A	4.901e^-4	0.876	UTR_3_PRIME orb
2L	10722425	2L_10722425_SNP [dm3] 2L_10722425_SNP [dm6]	T	A	4.918e^-4	0.876	INTERGENIC
2L	10722428	2L_10722428_SNP [dm3] 2L_10722428_SNP [dm6]	C	T	4.918e^-4	0.876	INTERGENIC
3L	12297238	3L_12297238_DEL [dm3] 3L_12304138_DEL [dm6]	TACGGAAAAAGGAGTGGGAA...	T	4.931e^-4	0.876	INTERGENIC
2L	421794	2L_421794_SNP [dm3] 2L_421794_SNP [dm6]	G	T	4.949e^-4	0.876	UTR_5_PRIME CG13692 UPSTREAM CG11885 DOWNSTREAM RpLP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	15270336	2R_15270336_SNP [dm3] 2R_19382831_SNP [dm6]	T	A	4.956e^-4	0.876	INTRON CG10073
2L	4079868	2L_4079868_SNP [dm3] 2L_4079868_SNP [dm6]	G	A	4.970e^-4	0.876	SYNONYMOUS_CODING ed
2R	6144010	2R_6144010_SNP [dm3] 2R_10256505_SNP [dm6]	G	A	4.985e^-4	0.876	UPSTREAM CG12911 INTERGENIC
2R	6144015	2R_6144015_SNP [dm3] 2R_10256510_SNP [dm6]	C	A	4.985e^-4	0.876	UPSTREAM CG12911 INTERGENIC
2R	12755604	2R_12755604_SNP [dm3] 2R_16868099_SNP [dm6]	A	T	4.992e^-4	0.876	UPSTREAM Ef1beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	6439469	2R_6439469_SNP [dm3] 2R_10551964_SNP [dm6]	T	G	4.998e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5318902	2R_5318902_INS [dm3] 2R_9431397_INS [dm6]	A	ATACA	5.005e^-4	0.876	INTRON Pdk
3R	10601259	3R_10601259_SNP [dm3] 3R_14775537_SNP [dm6]	C	A	5.011e^-4	0.876	INTRON jvl
3L	10779249	3L_10779249_INS [dm3] 3L_10786149_INS [dm6]	C	AA	5.018e^-4	0.876	DOWNSTREAM CR44544 INTERGENIC
3L	10353929	3L_10353929_SNP [dm3] 3L_10360829_SNP [dm6]	G	A	5.032e^-4	0.876	EXON CR44327	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10353937	3L_10353937_SNP [dm3] 3L_10360837_SNP [dm6]	A	C	5.032e^-4	0.876	EXON CR44327	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13464006	2L_13464006_SNP [dm3] 2L_13464006_SNP [dm6]	A	G	5.033e^-4	0.876	INTRON CG42784
2L	13464007	2L_13464007_SNP [dm3] 2L_13464007_SNP [dm6]	T	A	5.033e^-4	0.876	INTRON CG42784
2L	13464406	2L_13464406_SNP [dm3] 2L_13464406_SNP [dm6]	C	G	5.033e^-4	0.876	INTRON CG42784
2L	13464415	2L_13464415_SNP [dm3] 2L_13464415_SNP [dm6]	T	A	5.033e^-4	0.876	INTRON CG42784
3R	19845884	3R_19845884_SNP [dm3] 3R_24020162_SNP [dm6]	T	A	5.034e^-4	0.876	INTRON KrT95D
3L	10906559	3L_10906559_SNP [dm3] 3L_10913459_SNP [dm6]	A	C	5.055e^-4	0.876	INTERGENIC
3L	11793167	3L_11793167_SNP [dm3] 3L_11800067_SNP [dm6]	G	C	5.055e^-4	0.876	NON_SYNONYMOUS_CODING CG10361
3L	7890980	3L_7890980_SNP [dm3] 3L_7897880_SNP [dm6]	T	C	5.056e^-4	0.876	SYNONYMOUS_CODING pbl
2L	3046926	2L_3046926_SNP [dm3] 2L_3046926_SNP [dm6]	A	T	5.062e^-4	0.876	DOWNSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19984280	2L_19984280_INS [dm3] 2L_19984280_INS [dm6]	C	CATAAC	5.065e^-4	0.876	INTRON CG43861
2R	17094444	2R_17094444_SNP [dm3] 2R_21206939_SNP [dm6]	G	A	5.066e^-4	0.876	SYNONYMOUS_CODING Glycogenin INTRON CG44245 & 1 other
2R	8896103	2R_8896103_SNP [dm3] 2R_13008598_SNP [dm6]	T	C	5.068e^-4	0.876	DOWNSTREAM Su_z_2 INTERGENIC	TF binding site mE1_TFBS_cad
3L	13336552	3L_13336552_SNP [dm3] 3L_13343452_SNP [dm6]	T	A	5.071e^-4	0.876	DOWNSTREAM CR44559 INTERGENIC
2L	19822533	2L_19822533_DEL [dm3] 2L_19822533_DEL [dm6]	CC	C	5.071e^-4	0.876	INTRON sick
2R	3263958	2R_3263958_SNP [dm3] 2R_7376453_SNP [dm6]	A	T	5.095e^-4	0.876	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3R	9366068	3R_9366068_SNP [dm3] 3R_13540346_SNP [dm6]	T	G	5.117e^-4	0.876	INTERGENIC
3L	7835242	3L_7835242_SNP [dm3] 3L_7842142_SNP [dm6]	A	T	5.141e^-4	0.876	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7911801	2L_7911801_SNP [dm3] 2L_7911801_SNP [dm6]	C	T	5.148e^-4	0.876	INTRON Snoo
3L	17333245	3L_17333245_SNP [dm3] 3L_17340145_SNP [dm6]	T	G	5.164e^-4	0.876	UPSTREAM CG6479 & 1 other DOWNSTREAM CG13727 INTERGENIC
3L	7633639	3L_7633639_SNP [dm3] 3L_7640539_SNP [dm6]	A	G	5.167e^-4	0.876	UPSTREAM CG33276 DOWNSTREAM CG33275 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26119383	3R_26119383_SNP [dm3] 3R_30293661_SNP [dm6]	G	C	5.171e^-4	0.876	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12016606	X_12016606_SNP [dm3] X_12122573_SNP [dm6]	A	G	5.176e^-4	0.876	INTRON Ten-a
X	18287782	X_18287782_DEL [dm3] X_18393749_DEL [dm6]	CC	C	5.181e^-4	0.876	INTRON CG32549
2L	10752894	2L_10752894_SNP [dm3] 2L_10752894_SNP [dm6]	A	G	5.206e^-4	0.876	INTRON CG17124	TF binding site mE1_TFBS_cad
3L	10219833	3L_10219833_SNP [dm3] 3L_10226733_SNP [dm6]	A	C	5.209e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219855	3L_10219855_SNP [dm3] 3L_10226755_SNP [dm6]	G	T	5.209e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5022419	X_5022419_SNP [dm3] X_5128386_SNP [dm6]	A	G	5.214e^-4	0.876	INTRON rg & 1 other
2R	7437191	2R_7437191_SNP [dm3] 2R_11549686_SNP [dm6]	G	A	5.221e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	20877566	X_20877566_DEL [dm3] X_21006539_DEL [dm6]	GT	G	5.234e^-4	0.876	INTERGENIC
X	13460278	X_13460278_SNP [dm3] X_13566245_SNP [dm6]	A	G	5.239e^-4	0.876	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
2R	15209111	2R_15209111_SNP [dm3] 2R_19321606_SNP [dm6]	T	C	5.243e^-4	0.876	INTRON Rgk1	TF binding site mE1_TFBS_inv
3R	26612763	3R_26612763_SNP [dm3] 3R_30787041_SNP [dm6]	T	C	5.276e^-4	0.876	UTR_3_PRIME zfh1
3R	10182916	3R_10182916_SNP [dm3] 3R_14357194_SNP [dm6]	C	T	5.281e^-4	0.876	INTRON NK7.1
2L	5682402	2L_5682402_SNP [dm3] 2L_5682402_SNP [dm6]	A	T	5.282e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	420794	2L_420794_SNP [dm3] 2L_420794_SNP [dm6]	T	C	5.286e^-4	0.876	UTR_3_PRIME RpLP1 UPSTREAM CG13692 DOWNSTREAM CG11885 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
3R	7313871	3R_7313871_SNP [dm3] 3R_11488149_SNP [dm6]	A	T	5.291e^-4	0.876	DOWNSTREAM CR45581 INTERGENIC
3L	16468202	3L_16468202_SNP [dm3] 3L_16475102_SNP [dm6]	G	A	5.295e^-4	0.876	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17914898	X_17914898_DEL [dm3] X_18020865_DEL [dm6]	ATAATTAAATTGATTTAAAT...	A	5.298e^-4	0.876	INTRON Sh
3R	19569833	3R_19569833_SNP [dm3] 3R_23744111_SNP [dm6]	A	G	5.300e^-4	0.876	INTRON Hmgcr
X	20878472	X_20878472_SNP [dm3] X_21007445_SNP [dm6]	G	A	5.305e^-4	0.876	INTERGENIC
2L	3715558	2L_3715558_SNP [dm3] 2L_3715558_SNP [dm6]	T	C	5.342e^-4	0.876	SYNONYMOUS_CODING CG2818	TF binding site mE1_TFBS_sens
3L	2663896	3L_2663896_SNP [dm3] 3L_2663896_SNP [dm6]	T	C	5.371e^-4	0.876	DOWNSTREAM CG33234 INTRON Fife
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	5.388e^-4	0.876	INTRON kek5
X	20879733	X_20879733_SNP [dm3] X_21008706_SNP [dm6]	A	G	5.400e^-4	0.876	INTERGENIC
2L	4795700	2L_4795700_SNP [dm3] 2L_4795700_SNP [dm6]	T	A	5.405e^-4	0.876	DOWNSTREAM Clect27 INTRON CG3294
3R	26612735	3R_26612735_INS [dm3] 3R_30787013_INS [dm6]	C	CA	5.414e^-4	0.876	UTR_3_PRIME zfh1
2L	13973622	2L_13973622_SNP [dm3] 2L_13973622_SNP [dm6]	C	T	5.417e^-4	0.876	UTR_3_PRIME NimC1 UPSTREAM He DOWNSTREAM NimC1
3L	10353960	3L_10353960_SNP [dm3] 3L_10360860_SNP [dm6]	T	G	5.423e^-4	0.876	EXON CR44327	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6451261	X_6451261_SNP [dm3] X_6557228_SNP [dm6]	T	C	5.427e^-4	0.876	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
X	6451267	X_6451267_SNP [dm3] X_6557234_SNP [dm6]	C	A	5.427e^-4	0.876	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	19533795	2L_19533795_SNP [dm3] 2L_19533795_SNP [dm6]	T	C	5.432e^-4	0.876	START_GAINED CG33116 UTR_5_PRIME CG33116 DOWNSTREAM CG10137	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3536095	X_3536095_SNP [dm3] X_3642062_SNP [dm6]	T	A	5.437e^-4	0.876	INTRON AstA-R1
3L	1100597	3L_1100597_SNP [dm3] 3L_1100597_SNP [dm6]	A	G	5.449e^-4	0.876	NON_SYNONYMOUS_CODING bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21942759	2L_21942759_SNP [dm3] 2L_21942759_SNP [dm6]	G	C	5.466e^-4	0.876	INTERGENIC
2R	11964783	2R_11964783_SNP [dm3] 2R_16077278_SNP [dm6]	G	A	5.468e^-4	0.876	DOWNSTREAM CR43415 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6065490	2L_6065490_SNP [dm3] 2L_6065490_SNP [dm6]	G	C	5.471e^-4	0.876	SYNONYMOUS_CODING Fbw5 UPSTREAM CG9147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13463218	X_13463218_INS [dm3] X_13569185_INS [dm6]	T	TAT	5.485e^-4	0.876	INTRON Tango13
X	20875211	X_20875211_SNP [dm3] X_21004184_SNP [dm6]	G	A	5.494e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20877623	X_20877623_SNP [dm3] X_21006596_SNP [dm6]	G	A	5.494e^-4	0.876	INTERGENIC
X	20877649	X_20877649_SNP [dm3] X_21006622_SNP [dm6]	A	G	5.494e^-4	0.876	INTERGENIC
X	20877650	X_20877650_SNP [dm3] X_21006623_SNP [dm6]	A	T	5.494e^-4	0.876	INTERGENIC
X	20877685	X_20877685_SNP [dm3] X_21006658_SNP [dm6]	C	T	5.494e^-4	0.876	INTERGENIC
3R	10603796	3R_10603796_SNP [dm3] 3R_14778074_SNP [dm6]	C	T	5.503e^-4	0.876	INTRON jvl
2R	16010266	2R_16010266_SNP [dm3] 2R_20122761_SNP [dm6]	T	A	5.506e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	11242295	2R_11242295_SNP [dm3] 2R_15354790_SNP [dm6]	G	C	5.514e^-4	0.876	INTRON unc-5
2L	15115640	2L_15115640_SNP [dm3] 2L_15115640_SNP [dm6]	A	G	5.519e^-4	0.876	SYNONYMOUS_CODING stc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	14230048	2R_14230048_DEL [dm3] 2R_18342543_DEL [dm6]	ATAA	A	5.521e^-4	0.876	INTRON sbb
2L	14114777	2L_14114777_DEL [dm3] 2L_14114777_DEL [dm6]	TT	T	5.522e^-4	0.876	INTERGENIC
2R	12755237	2R_12755237_SNP [dm3] 2R_16867732_SNP [dm6]	C	T	5.524e^-4	0.876	UPSTREAM Ef1beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12755272	2R_12755272_SNP [dm3] 2R_16867767_SNP [dm6]	T	C	5.524e^-4	0.876	UPSTREAM Ef1beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	23139015	3L_23139015_SNP [dm3] 3L_23145915_SNP [dm6]	A	G	5.528e^-4	0.876	INTERGENIC
2L	4428392	2L_4428392_SNP [dm3] 2L_4428392_SNP [dm6]	G	T	5.529e^-4	0.876	INTRON CG15431
2L	7742428	2L_7742428_SNP [dm3] 2L_7742428_SNP [dm6]	A	T	5.529e^-4	0.876	UPSTREAM Acp1 INTERGENIC
3R	9192834	3R_9192834_SNP [dm3] 3R_13367112_SNP [dm6]	C	T	5.530e^-4	0.876	UPSTREAM Dic1 & 1 other INTRON Dic1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9078300	2L_9078300_SNP [dm3] 2L_9078300_SNP [dm6]	C	A	5.533e^-4	0.876	DOWNSTREAM CG12439 INTERGENIC
X	16681158	X_16681158_SNP [dm3] X_16787125_SNP [dm6]	C	T	5.534e^-4	0.876	UPSTREAM Sap30 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	13128504	X_13128504_SNP [dm3] X_13234471_SNP [dm6]	T	A	5.542e^-4	0.876	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4427987	2L_4427987_SNP [dm3] 2L_4427987_SNP [dm6]	A	G	5.565e^-4	0.876	INTRON CG15431
2L	4428074	2L_4428074_SNP [dm3] 2L_4428074_SNP [dm6]	A	C	5.565e^-4	0.876	INTRON CG15431
3L	5956799	3L_5956799_SNP [dm3] 3L_5963699_SNP [dm6]	G	T	5.568e^-4	0.876	INTERGENIC
X	20874190	X_20874190_SNP [dm3] X_21003163_SNP [dm6]	C	A	5.582e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20875600	X_20875600_SNP [dm3] X_21004573_SNP [dm6]	G	A	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875656	X_20875656_SNP [dm3] X_21004629_SNP [dm6]	A	C	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875658	X_20875658_SNP [dm3] X_21004631_SNP [dm6]	G	A	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875675	X_20875675_SNP [dm3] X_21004648_SNP [dm6]	C	G	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875704	X_20875704_SNP [dm3] X_21004677_SNP [dm6]	G	A	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875740	X_20875740_SNP [dm3] X_21004713_SNP [dm6]	G	C	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875757	X_20875757_SNP [dm3] X_21004730_SNP [dm6]	G	A	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875774	X_20875774_SNP [dm3] X_21004747_SNP [dm6]	C	G	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875786	X_20875786_SNP [dm3] X_21004759_SNP [dm6]	C	G	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875792	X_20875792_SNP [dm3] X_21004765_SNP [dm6]	A	T	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875793	X_20875793_SNP [dm3] X_21004766_SNP [dm6]	T	A	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875827	X_20875827_SNP [dm3] X_21004800_SNP [dm6]	G	T	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875829	X_20875829_DEL [dm3] X_21004802_DEL [dm6]	TACATCGACTCGGCTAT...	C	5.582e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20876885	X_20876885_INS [dm3] X_21005858_INS [dm6]	G	GTAAACAAGCAAACACCCAA...	5.582e^-4	0.876	INTERGENIC
X	20876889	X_20876889_SNP [dm3] X_21005862_SNP [dm6]	A	G	5.582e^-4	0.876	INTERGENIC
X	20876896	X_20876896_SNP [dm3] X_21005869_SNP [dm6]	G	C	5.582e^-4	0.876	INTERGENIC
X	20877050	X_20877050_SNP [dm3] X_21006023_SNP [dm6]	C	G	5.582e^-4	0.876	INTERGENIC	transposable element FlyBase
X	20877138	X_20877138_SNP [dm3] X_21006111_SNP [dm6]	T	C	5.582e^-4	0.876	INTERGENIC	transposable element FlyBase
X	20877152	X_20877152_SNP [dm3] X_21006125_SNP [dm6]	G	C	5.582e^-4	0.876	INTERGENIC	transposable element FlyBase
X	20877154	X_20877154_INS [dm3] X_21006127_INS [dm6]	G	TATATACATAC...	5.582e^-4	0.876	INTERGENIC	transposable element FlyBase
X	20877195	X_20877195_DEL [dm3] X_21006168_DEL [dm6]	TT	T	5.582e^-4	0.876	INTERGENIC	transposable element FlyBase
X	20877212	X_20877212_DEL [dm3] X_21006185_DEL [dm6]	AT	A	5.582e^-4	0.876	INTERGENIC	transposable element FlyBase
X	20877221	X_20877221_SNP [dm3] X_21006194_SNP [dm6]	T	C	5.582e^-4	0.876	INTERGENIC	transposable element FlyBase
X	20877312	X_20877312_SNP [dm3] X_21006285_SNP [dm6]	G	C	5.582e^-4	0.876	INTERGENIC	transposable element FlyBase
X	20877313	X_20877313_DEL [dm3] X_21006286_DEL [dm6]	TTGAA	T	5.582e^-4	0.876	INTERGENIC	transposable element FlyBase
X	20877405	X_20877405_SNP [dm3] X_21006378_SNP [dm6]	A	T	5.582e^-4	0.876	INTERGENIC
X	20877575	X_20877575_SNP [dm3] X_21006548_SNP [dm6]	G	A	5.582e^-4	0.876	INTERGENIC
X	20877879	X_20877879_SNP [dm3] X_21006852_SNP [dm6]	A	T	5.582e^-4	0.876	INTERGENIC
X	20878262	X_20878262_DEL [dm3] X_21007235_DEL [dm6]	ATTTTCAGTTCCGCA...	A	5.582e^-4	0.876	INTERGENIC
2R	3659431	2R_3659431_SNP [dm3] 2R_7771926_SNP [dm6]	G	A	5.613e^-4	0.876	INTRON CG30497 & 1 other
3R	25024503	3R_25024503_SNP [dm3] 3R_29198781_SNP [dm6]	G	A	5.621e^-4	0.876	INTRON CG14515
3L	5667362	3L_5667362_SNP [dm3] 3L_5674262_SNP [dm6]	A	G	5.622e^-4	0.876	INTRON sif	TF binding site mE1_TFBS_chinmo
X	5212349	X_5212349_SNP [dm3] X_5318316_SNP [dm6]	T	A	5.632e^-4	0.876	SYNONYMOUS_CODING Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	14542118	3R_14542118_SNP [dm3] 3R_18716396_SNP [dm6]	T	A	5.633e^-4	0.876	UTR_3_PRIME VAChT INTRON Cha	TF binding site mE1_TFBS_kn
3L	2617151	3L_2617151_SNP [dm3] 3L_2617151_SNP [dm6]	A	G	5.641e^-4	0.876	INTRON Pxn
2R	6737221	2R_6737221_SNP [dm3] 2R_10849716_SNP [dm6]	A	T	5.644e^-4	0.876	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6737223	2R_6737223_SNP [dm3] 2R_10849718_SNP [dm6]	A	C	5.644e^-4	0.876	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20210450	2R_20210450_INS [dm3] 2R_24322927_INS [dm6]	T	TT	5.649e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_inv
X	19896211	X_19896211_SNP [dm3] X_20002178_SNP [dm6]	G	C	5.651e^-4	0.876	UPSTREAM CG17003 INTERGENIC
3L	22786865	3L_22786865_SNP [dm3] 3L_22793765_SNP [dm6]	T	C	5.654e^-4	0.876	UTR_3_PRIME jim
3R	9961597	3R_9961597_SNP [dm3] 3R_14135875_SNP [dm6]	A	G	5.664e^-4	0.876	INTERGENIC
3R	14423609	3R_14423609_SNP [dm3] 3R_18597887_SNP [dm6]	T	G	5.677e^-4	0.876	UPSTREAM CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9760102	3R_9760102_SNP [dm3] 3R_13934380_SNP [dm6]	C	G	5.678e^-4	0.876	INTERGENIC
2R	3569418	2R_3569418_SNP [dm3] 2R_7681913_SNP [dm6]	T	C	5.685e^-4	0.876	UPSTREAM CG1399 INTRON CG1399
2L	14367958	2L_14367958_SNP [dm3] 2L_14367958_SNP [dm6]	G	T	5.688e^-4	0.876	INTERGENIC
3R	7825409	3R_7825409_DEL [dm3] 3R_11999687_DEL [dm6]	CC	C	5.704e^-4	0.876	INTRON Tk & 1 other
3L	10906564	3L_10906564_SNP [dm3] 3L_10913464_SNP [dm6]	T	G	5.705e^-4	0.876	INTERGENIC
2L	1145145	2L_1145145_SNP [dm3] 2L_1145145_SNP [dm6]	G	T	5.722e^-4	0.876	INTRON MFS3	TF binding site mE1_TFBS_cad
X	20875674	X_20875674_SNP [dm3] X_21004647_SNP [dm6]	T	A	5.728e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	17928601	2L_17928601_SNP [dm3] 2L_17928601_SNP [dm6]	G	A	5.732e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7743361	2L_7743361_SNP [dm3] 2L_7743361_SNP [dm6]	C	T	5.737e^-4	0.876	DOWNSTREAM CG7214 INTERGENIC
3R	13418027	3R_13418027_SNP [dm3] 3R_17592305_SNP [dm6]	C	T	5.737e^-4	0.876	INTERGENIC
3L	3942492	3L_3942492_SNP [dm3] 3L_3942492_SNP [dm6]	G	A	5.748e^-4	0.876	UPSTREAM CG14982 & 1 other INTERGENIC
3R	14717242	3R_14717242_SNP [dm3] 3R_18891520_SNP [dm6]	T	C	5.752e^-4	0.876	INTERGENIC
2L	3286114	2L_3286114_SNP [dm3] 2L_3286114_SNP [dm6]	C	T	5.760e^-4	0.876	INTERGENIC
3L	14911549	3L_14911549_SNP [dm3] 3L_14918449_SNP [dm6]	A	G	5.769e^-4	0.876	INTRON DCX-EMAP
3L	14911550	3L_14911550_SNP [dm3] 3L_14918450_SNP [dm6]	G	C	5.769e^-4	0.876	INTRON DCX-EMAP
3R	9196104	3R_9196104_SNP [dm3] 3R_13370382_SNP [dm6]	G	A	5.773e^-4	0.876	SYNONYMOUS_CODING Lip3 DOWNSTREAM CheA87a
2R	15207447	2R_15207447_SNP [dm3] 2R_19319942_SNP [dm6]	A	G	5.775e^-4	0.876	INTRON Rgk1
X	14301449	X_14301449_SNP [dm3] X_14407416_SNP [dm6]	T	C	5.781e^-4	0.876	INTRON dpr8
3L	15590997	3L_15590997_SNP [dm3] 3L_15597897_SNP [dm6]	A	T	5.781e^-4	0.876	INTRON RhoGAP71E	TF binding site mE1_TFBS_HSA
2L	14388703	2L_14388703_SNP [dm3] 2L_14388703_SNP [dm6]	T	C	5.797e^-4	0.876	INTERGENIC
X	17673061	X_17673061_INS [dm3] X_17779028_INS [dm6]	G	TCCATTTTTTCGACGGCGTT...	5.802e^-4	0.876	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12808667	2L_12808667_SNP [dm3] 2L_12808667_SNP [dm6]	C	G	5.812e^-4	0.876	UPSTREAM CR43818 INTERGENIC
3R	24931599	3R_24931599_SNP [dm3] 3R_29105877_SNP [dm6]	A	G	5.819e^-4	0.876	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8377416	2R_8377416_SNP [dm3] 2R_12489911_SNP [dm6]	T	A	5.827e^-4	0.876	INTRON fdl
X	19517597	X_19517597_SNP [dm3] X_19623564_SNP [dm6]	G	A	5.832e^-4	0.876	UPSTREAM NAA20 INTRON MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12731711	X_12731711_SNP [dm3] X_12837678_SNP [dm6]	C	G	5.834e^-4	0.876	INTRON Pde9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	26640139	3R_26640139_SNP [dm3] 3R_30814417_SNP [dm6]	G	C	5.839e^-4	0.876	INTRON cindr	TF binding site BDTNP1_TFBS_twi
3R	26282022	3R_26282022_SNP [dm3] 3R_30456300_SNP [dm6]	A	G	5.846e^-4	0.876	UPSTREAM aralar1 DOWNSTREAM CG2224 INTERGENIC
3L	4099042	3L_4099042_DEL [dm3] 3L_4099042_DEL [dm6]	GC	A	5.858e^-4	0.876	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11630638	3R_11630638_SNP [dm3] 3R_15804916_SNP [dm6]	T	A	5.878e^-4	0.876	INTRON alpha-Man-IIb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11630640	3R_11630640_SNP [dm3] 3R_15804918_SNP [dm6]	T	A	5.878e^-4	0.876	INTRON alpha-Man-IIb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17333226	3L_17333226_SNP [dm3] 3L_17340126_SNP [dm6]	T	C	5.883e^-4	0.876	UPSTREAM CG6479 & 1 other DOWNSTREAM CG13727 INTERGENIC
3L	11466313	3L_11466313_INS [dm3] 3L_11473213_INS [dm6]	A	AAAA	5.897e^-4	0.876	UPSTREAM Vha16-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14301489	X_14301489_SNP [dm3] X_14407456_SNP [dm6]	T	G	5.902e^-4	0.876	INTRON dpr8
X	14301507	X_14301507_SNP [dm3] X_14407474_SNP [dm6]	G	A	5.902e^-4	0.876	INTRON dpr8
2L	4427843	2L_4427843_SNP [dm3] 2L_4427843_SNP [dm6]	G	A	5.902e^-4	0.876	INTRON CG15431
X	10785271	X_10785271_SNP [dm3] X_10891238_SNP [dm6]	G	T	5.905e^-4	0.876	UTR_5_PRIME Ork1 UPSTREAM CR45616 & 1 other
2L	10699810	2L_10699810_SNP [dm3] 2L_10699810_SNP [dm6]	G	A	5.909e^-4	0.876	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad
3R	6021168	3R_6021168_SNP [dm3] 3R_10195446_SNP [dm6]	G	A	5.912e^-4	0.876	INTRON Syn
3R	23695874	3R_23695874_SNP [dm3] 3R_27870152_SNP [dm6]	A	G	5.922e^-4	0.876	INTRON CG34353
3R	23695877	3R_23695877_SNP [dm3] 3R_27870155_SNP [dm6]	A	G	5.922e^-4	0.876	INTRON CG34353
3R	23695906	3R_23695906_SNP [dm3] 3R_27870184_SNP [dm6]	C	T	5.922e^-4	0.876	INTRON CG34353
2L	12441393	2L_12441393_SNP [dm3] 2L_12441393_SNP [dm6]	C	T	5.925e^-4	0.876	DOWNSTREAM Oatp33Ea & 1 other INTERGENIC
3L	21859346	3L_21859346_SNP [dm3] 3L_21866246_SNP [dm6]	T	C	5.931e^-4	0.876	INTRON mub
3R	9357655	3R_9357655_SNP [dm3] 3R_13531933_SNP [dm6]	G	A	5.954e^-4	0.876	INTERGENIC
2L	15102804	2L_15102804_SNP [dm3] 2L_15102804_SNP [dm6]	T	A	5.959e^-4	0.876	INTERGENIC
2L	3769993	2L_3769993_SNP [dm3] 2L_3769993_SNP [dm6]	T	A	5.979e^-4	0.876	DOWNSTREAM CG43707 EXON CR43704	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10995056	3R_10995056_SNP [dm3] 3R_15169334_SNP [dm6]	A	T	5.985e^-4	0.876	INTRON Gyc88E
3R	14761495	3R_14761495_SNP [dm3] 3R_18935773_SNP [dm6]	T	A	5.991e^-4	0.876	INTRON CG42613
X	14400834	X_14400834_INS [dm3] X_14506801_INS [dm6]	A	ATGGCCA	6.008e^-4	0.876	INTERGENIC
3R	26119375	3R_26119375_SNP [dm3] 3R_30293653_SNP [dm6]	T	A	6.025e^-4	0.876	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16681097	X_16681097_SNP [dm3] X_16787064_SNP [dm6]	C	G	6.073e^-4	0.876	UPSTREAM Sap30 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	15093700	2L_15093700_SNP [dm3] 2L_15093700_SNP [dm6]	C	G	6.074e^-4	0.876	INTRON CG15270
2L	15093713	2L_15093713_SNP [dm3] 2L_15093713_SNP [dm6]	A	T	6.074e^-4	0.876	INTRON CG15270
X	20872602	X_20872602_SNP [dm3] X_21001575_SNP [dm6]	T	G	6.075e^-4	0.876	INTERGENIC
2R	7155698	2R_7155698_SNP [dm3] 2R_11268193_SNP [dm6]	A	G	6.097e^-4	0.876	SPLICE_SITE_REGION Cpr47Ef INTRON Cpr47Ef
3R	9760120	3R_9760120_SNP [dm3] 3R_13934398_SNP [dm6]	A	C	6.107e^-4	0.876	INTERGENIC
3L	10219735	3L_10219735_SNP [dm3] 3L_10226635_SNP [dm6]	G	A	6.114e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219776	3L_10219776_SNP [dm3] 3L_10226676_SNP [dm6]	C	T	6.114e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7950568	2L_7950568_SNP [dm3] 2L_7950568_SNP [dm6]	G	T	6.129e^-4	0.876	INTRON Snoo
3L	13949629	3L_13949629_SNP [dm3] 3L_13956529_SNP [dm6]	C	T	6.132e^-4	0.876	INTRON CG32137
3R	8345270	3R_8345270_SNP [dm3] 3R_12519548_SNP [dm6]	T	A	6.137e^-4	0.876	INTRON Octbeta3R
3L	6985746	3L_6985746_SNP [dm3] 3L_6992646_SNP [dm6]	C	A	6.138e^-4	0.876	INTRON bin	TF binding site mE1_TFBS_cad
X	20872599	X_20872599_SNP [dm3] X_21001572_SNP [dm6]	T	C	6.140e^-4	0.876	INTERGENIC
3L	10779198	3L_10779198_SNP [dm3] 3L_10786098_SNP [dm6]	C	A	6.151e^-4	0.876	DOWNSTREAM CR44544 INTERGENIC
3L	13336679	3L_13336679_SNP [dm3] 3L_13343579_SNP [dm6]	A	C	6.194e^-4	0.876	EXON CR44559
2L	10688546	2L_10688546_SNP [dm3] 2L_10688546_SNP [dm6]	T	A	6.201e^-4	0.876	DOWNSTREAM CG7294 INTERGENIC
X	3968031	X_3968031_DEL [dm3] X_4073998_DEL [dm6]	ACATTTC	A	6.203e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6445235	3L_6445235_SNP [dm3] 3L_6452135_SNP [dm6]	C	A	6.214e^-4	0.876	INTRON CG42747
2R	20111569	2R_20111569_SNP [dm3] 2R_24224046_SNP [dm6]	A	C	6.217e^-4	0.876	INTRON CG30419	TF binding site mE1_TFBS_chinmo
X	6744358	X_6744358_SNP [dm3] X_6850325_SNP [dm6]	C	T	6.230e^-4	0.876	SYNONYMOUS_CODING CG4558 UPSTREAM Cht11	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20527032	X_20527032_SNP [dm3] X_20656005_SNP [dm6]	T	G	6.238e^-4	0.876	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5802737	2L_5802737_SNP [dm3] 2L_5802737_SNP [dm6]	C	A	6.245e^-4	0.876	UPSTREAM CG14005 INTRON CG7239	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4454918	2R_4454918_SNP [dm3] 2R_8567413_SNP [dm6]	G	A	6.260e^-4	0.876	UPSTREAM Cyp6a14 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	14367893	2L_14367893_SNP [dm3] 2L_14367893_SNP [dm6]	T	A	6.288e^-4	0.876	INTERGENIC
2L	7681964	2L_7681964_SNP [dm3] 2L_7681964_SNP [dm6]	G	A	6.295e^-4	0.876	SYNONYMOUS_CODING Myo28B1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7569505	3R_7569505_DEL [dm3] 3R_11743783_DEL [dm6]	CAA	C	6.308e^-4	0.876	UTR_3_PRIME CG14722 DOWNSTREAM CG6923
X	20874148	X_20874148_SNP [dm3] X_21003121_SNP [dm6]	C	T	6.310e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12834063	3L_12834063_SNP [dm3] 3L_12840963_SNP [dm6]	A	G	6.313e^-4	0.876	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	16927691	2R_16927691_SNP [dm3] 2R_21040186_SNP [dm6]	T	C	6.318e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16927712	2R_16927712_SNP [dm3] 2R_21040207_SNP [dm6]	A	T	6.318e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9830249	3R_9830249_SNP [dm3] 3R_14004527_SNP [dm6]	A	T	6.321e^-4	0.876	INTRON rdx
X	20318721	X_20318721_SNP [dm3] X_20447694_SNP [dm6]	A	G	6.324e^-4	0.876	DOWNSTREAM CG42578 INTERGENIC
3R	18090626	3R_18090626_DEL [dm3] 3R_22264904_DEL [dm6]	GGTGAAAGGGAGGGAT...	G	6.334e^-4	0.876	INTRON SKIP
3R	16704328	3R_16704328_SNP [dm3] 3R_20878606_SNP [dm6]	T	A	6.339e^-4	0.876	DOWNSTREAM TotZ EXON CR44048
2L	19079753	2L_19079753_SNP [dm3] 2L_19079753_SNP [dm6]	C	A	6.350e^-4	0.876	UTR_3_PRIME Lim3 UPSTREAM CG10700	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17591858	3L_17591858_SNP [dm3] 3L_17598758_SNP [dm6]	G	A	6.355e^-4	0.876	INTRON Eip74EF
2L	1279284	2L_1279284_SNP [dm3] 2L_1279284_SNP [dm6]	T	G	6.361e^-4	0.876	INTRON robo3
2L	2764146	2L_2764146_SNP [dm3] 2L_2764146_SNP [dm6]	A	C	6.370e^-4	0.876	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
3L	13845358	3L_13845358_SNP [dm3] 3L_13852258_SNP [dm6]	T	C	6.371e^-4	0.876	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5786811	3R_5786811_SNP [dm3] 3R_9961089_SNP [dm6]	G	A	6.376e^-4	0.876	INTRON Glut4EF	TF binding site mE1_TFBS_HSA
2R	19529370	2R_19529370_SNP [dm3] 2R_23641847_SNP [dm6]	T	A	6.381e^-4	0.876	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9752024	3R_9752024_SNP [dm3] 3R_13926302_SNP [dm6]	C	T	6.382e^-4	0.876	INTERGENIC
X	14134893	X_14134893_SNP [dm3] X_14240860_SNP [dm6]	G	A	6.396e^-4	0.876	SYNONYMOUS_CODING mRNA-cap DOWNSTREAM CG1434	TF binding site mE1_TFBS_sens
2R	16309182	2R_16309182_SNP [dm3] 2R_20421677_SNP [dm6]	A	G	6.397e^-4	0.876	INTERGENIC
3L	11041882	3L_11041882_SNP [dm3] 3L_11048782_SNP [dm6]	A	C	6.398e^-4	0.876	INTRON CG43693
2R	12146333	2R_12146333_SNP [dm3] 2R_16258828_SNP [dm6]	G	T	6.400e^-4	0.876	INTRON CngA
3L	2656658	3L_2656658_SNP [dm3] 3L_2656658_SNP [dm6]	C	T	6.411e^-4	0.876	UTR_3_PRIME Fife
2L	7207233	2L_7207233_SNP [dm3] 2L_7207233_SNP [dm6]	T	C	6.411e^-4	0.876	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
2R	15270364	2R_15270364_SNP [dm3] 2R_19382859_SNP [dm6]	T	C	6.412e^-4	0.876	SYNONYMOUS_CODING CG10073
3R	22144237	3R_22144237_SNP [dm3] 3R_26318515_SNP [dm6]	T	A	6.435e^-4	0.876	UTR_5_PRIME CG33970
2R	10140007	2R_10140007_SNP [dm3] 2R_14252502_SNP [dm6]	T	C	6.441e^-4	0.876	UTR_3_PRIME Mdr50 DOWNSTREAM Hsc70-5
2R	16382473	2R_16382473_SNP [dm3] 2R_20494968_SNP [dm6]	C	T	6.448e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14388712	2L_14388712_SNP [dm3] 2L_14388712_SNP [dm6]	A	C	6.452e^-4	0.876	INTERGENIC
2R	7408184	2R_7408184_SNP [dm3] 2R_11520679_SNP [dm6]	T	A	6.475e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7408586	2R_7408586_SNP [dm3] 2R_11521081_SNP [dm6]	C	T	6.475e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7408667	2R_7408667_SNP [dm3] 2R_11521162_SNP [dm6]	G	A	6.475e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16892157	3R_16892157_SNP [dm3] 3R_21066435_SNP [dm6]	T	C	6.477e^-4	0.876	INTRON AnxB9
3R	9310781	3R_9310781_SNP [dm3] 3R_13485059_SNP [dm6]	C	T	6.477e^-4	0.876	INTERGENIC
2R	11471679	2R_11471679_SNP [dm3] 2R_15584174_SNP [dm6]	C	T	6.498e^-4	0.876	INTERGENIC
2L	5802593	2L_5802593_SNP [dm3] 2L_5802593_SNP [dm6]	C	T	6.504e^-4	0.876	SYNONYMOUS_CODING CG7239 UPSTREAM CG14005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15428433	X_15428433_SNP [dm3] X_15534400_SNP [dm6]	T	C	6.510e^-4	0.876	INTRON Ac13E
2L	17542237	2L_17542237_SNP [dm3] 2L_17542237_SNP [dm6]	C	A	6.518e^-4	0.876	EXON CR43304
2L	3858986	2L_3858986_SNP [dm3] 2L_3858986_SNP [dm6]	C	T	6.521e^-4	0.876	INTERGENIC
2L	3859014	2L_3859014_SNP [dm3] 2L_3859014_SNP [dm6]	C	T	6.521e^-4	0.876	INTERGENIC
3R	15201682	3R_15201682_SNP [dm3] 3R_19375960_SNP [dm6]	A	G	6.523e^-4	0.876	SYNONYMOUS_CODING CG31404 DOWNSTREAM CG31245 INTRON Ino80
2R	14607112	2R_14607112_DEL [dm3] 2R_18719607_DEL [dm6]	AT	A	6.559e^-4	0.876	UPSTREAM mir-4982 INTRON Hs3st-A
2R	14396573	2R_14396573_SNP [dm3] 2R_18509068_SNP [dm6]	C	T	6.559e^-4	0.876	INTERGENIC
X	3536341	X_3536341_SNP [dm3] X_3642308_SNP [dm6]	T	A	6.576e^-4	0.876	INTRON AstA-R1
X	2354764	X_2354764_SNP [dm3] X_2460731_SNP [dm6]	A	G	6.584e^-4	0.876	INTRON boi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14554776	2L_14554776_DEL [dm3] 2L_14554776_DEL [dm6]	TGTCGTT	T	6.643e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	16373162	X_16373162_DEL [dm3] X_16479129_DEL [dm6]	CC	C	6.655e^-4	0.876	INTRON para
3L	15611717	3L_15611717_SNP [dm3] 3L_15618617_SNP [dm6]	A	G	6.659e^-4	0.876	INTRON comm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3L	15611725	3L_15611725_SNP [dm3] 3L_15618625_SNP [dm6]	C	A	6.659e^-4	0.876	INTRON comm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
2L	4163918	2L_4163918_SNP [dm3] 2L_4163918_SNP [dm6]	A	C	6.661e^-4	0.876	DOWNSTREAM Or24a INTERGENIC
2L	2350486	2L_2350486_SNP [dm3] 2L_2350486_SNP [dm6]	T	C	6.661e^-4	0.876	INTRON CG9967 & 1 other
2R	14396629	2R_14396629_SNP [dm3] 2R_18509124_SNP [dm6]	G	C	6.666e^-4	0.876	INTERGENIC
3R	24794716	3R_24794716_SNP [dm3] 3R_28968994_SNP [dm6]	G	A	6.670e^-4	0.876	INTRON CG14521
3L	15606040	3L_15606040_SNP [dm3] 3L_15612940_SNP [dm6]	T	C	6.678e^-4	0.876	UPSTREAM CG13449 DOWNSTREAM comm3 INTERGENIC
3L	22905022	3L_22905022_SNP [dm3] 3L_22911922_SNP [dm6]	G	C	6.741e^-4	0.876	UTR_5_PRIME CG12768	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22914517	3L_22914517_SNP [dm3] 3L_22921417_SNP [dm6]	C	A	6.741e^-4	0.876	INTRON CG12768	TF binding site mE1_TFBS_HSA
3L	22929939	3L_22929939_SNP [dm3] 3L_22936839_SNP [dm6]	C	T	6.741e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9861930	2L_9861930_SNP [dm3] 2L_9861930_SNP [dm6]	A	G	6.742e^-4	0.876	INTRON nAChRalpha6
3R	10994960	3R_10994960_SNP [dm3] 3R_15169238_SNP [dm6]	G	A	6.763e^-4	0.876	INTRON Gyc88E
2L	13974090	2L_13974090_SNP [dm3] 2L_13974090_SNP [dm6]	A	G	6.776e^-4	0.876	UTR_3_PRIME NimC1 DOWNSTREAM NimC1
3L	23426778	3L_23426778_SNP [dm3] 3L_23433678_SNP [dm6]	T	C	6.785e^-4	0.876	INTERGENIC	transposable element FlyBase
X	1282781	X_1282781_SNP [dm3] X_1388748_SNP [dm6]	T	C	6.786e^-4	0.876	UTR_5_PRIME CG32813 INTRON CG32813	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	15101687	2L_15101687_SNP [dm3] 2L_15101687_SNP [dm6]	T	C	6.786e^-4	0.876	INTERGENIC
2R	13992777	2R_13992777_SNP [dm3] 2R_18105272_SNP [dm6]	G	A	6.788e^-4	0.876	NON_SYNONYMOUS_CODING CG5756
X	20527070	X_20527070_SNP [dm3] X_20656043_SNP [dm6]	G	C	6.798e^-4	0.876	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20527076	X_20527076_SNP [dm3] X_20656049_SNP [dm6]	A	G	6.798e^-4	0.876	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20527093	X_20527093_SNP [dm3] X_20656066_SNP [dm6]	A	T	6.798e^-4	0.876	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16099065	3R_16099065_SNP [dm3] 3R_20273343_SNP [dm6]	C	T	6.799e^-4	0.876	INTRON cic
3L	15469574	3L_15469574_SNP [dm3] 3L_15476474_SNP [dm6]	T	A	6.816e^-4	0.876	INTERGENIC
3R	7973853	3R_7973853_SNP [dm3] 3R_12148131_SNP [dm6]	A	T	6.822e^-4	0.876	INTRON dpr15
3L	8169871	3L_8169871_SNP [dm3] 3L_8176771_SNP [dm6]	G	A	6.823e^-4	0.876	SYNONYMOUS_CODING Nmt UPSTREAM RecQ4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16197454	X_16197454_DEL [dm3] X_16303421_DEL [dm6]	CT	C	6.830e^-4	0.876	UPSTREAM CG3679 DOWNSTREAM CG3632 INTERGENIC
3L	3108999	3L_3108999_SNP [dm3] 3L_3108999_SNP [dm6]	C	T	6.834e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_sens
2L	12872229	2L_12872229_SNP [dm3] 2L_12872229_SNP [dm6]	C	T	6.836e^-4	0.876	INTERGENIC
3R	6131472	3R_6131472_SNP [dm3] 3R_10305750_SNP [dm6]	A	G	6.838e^-4	0.876	SYNONYMOUS_CODING CG43143
3R	6131997	3R_6131997_SNP [dm3] 3R_10306275_SNP [dm6]	G	A	6.838e^-4	0.876	SYNONYMOUS_CODING CG43143
2L	2823404	2L_2823404_DEL [dm3] 2L_2823404_DEL [dm6]	TGCTT	T	6.863e^-4	0.876	DOWNSTREAM CG3123 INTRON Duox
3L	22914706	3L_22914706_SNP [dm3] 3L_22921606_SNP [dm6]	T	A	6.867e^-4	0.876	INTRON CG12768	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20526314	X_20526314_SNP [dm3] X_20655287_SNP [dm6]	C	T	6.873e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11039807	2R_11039807_SNP [dm3] 2R_15152302_SNP [dm6]	G	T	6.879e^-4	0.876	INTERGENIC
3L	8076388	3L_8076388_SNP [dm3] 3L_8083288_SNP [dm6]	T	A	6.884e^-4	0.876	UPSTREAM CR43974 INTRON Ect4	TF binding site mE1_TFBS_cad
3L	13336634	3L_13336634_SNP [dm3] 3L_13343534_SNP [dm6]	A	T	6.898e^-4	0.876	DOWNSTREAM CR44559 INTERGENIC
2R	20078648	2R_20078648_SNP [dm3] 2R_24191125_SNP [dm6]	C	T	6.902e^-4	0.876	SYNONYMOUS_CODING ocm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14642827	3L_14642827_SNP [dm3] 3L_14649727_SNP [dm6]	G	T	6.906e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	20965175	3L_20965175_SNP [dm3] 3L_20972075_SNP [dm6]	A	G	6.908e^-4	0.876	SYNONYMOUS_CODING CG33286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25688112	3R_25688112_SNP [dm3] 3R_29862390_SNP [dm6]	T	C	6.912e^-4	0.876	UPSTREAM CG15514 & 2 others INTRON RpS8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14443230	3L_14443230_SNP [dm3] 3L_14450130_SNP [dm6]	A	T	6.913e^-4	0.876	INTRON bbg
2L	14370466	2L_14370466_INS [dm3] 2L_14370466_INS [dm6]	G	GTGTG	6.923e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	12821561	X_12821561_SNP [dm3] X_12927528_SNP [dm6]	T	C	6.933e^-4	0.876	INTRON fne
2L	9534660	2L_9534660_SNP [dm3] 2L_9534660_SNP [dm6]	C	A	6.944e^-4	0.876	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo
3L	14131983	3L_14131983_SNP [dm3] 3L_14138883_SNP [dm6]	A	G	6.945e^-4	0.876	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	26064379	3R_26064379_INS [dm3] 3R_30238657_INS [dm6]	C	CGTGAGTAGC	6.962e^-4	0.876	UPSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7986579	3L_7986579_MNP [dm3] 3L_7993479_MNP [dm6]	GTT	TAG	6.974e^-4	0.876	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	8622400	2R_8622400_SNP [dm3] 2R_12734895_SNP [dm6]	A	T	6.986e^-4	0.876	INTRON CG42663
X	6744349	X_6744349_SNP [dm3] X_6850316_SNP [dm6]	C	G	6.988e^-4	0.876	SYNONYMOUS_CODING CG4558 UPSTREAM Cht11	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9961938	3R_9961938_SNP [dm3] 3R_14136216_SNP [dm6]	G	A	6.994e^-4	0.876	INTERGENIC
2R	11553050	2R_11553050_SNP [dm3] 2R_15665545_SNP [dm6]	T	A	6.995e^-4	0.876	UPSTREAM fus INTRON fus	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	10747551	2L_10747551_SNP [dm3] 2L_10747551_SNP [dm6]	A	T	7.004e^-4	0.876	INTRON CG17124	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7828657	2L_7828657_DEL [dm3] 2L_7828657_DEL [dm6]	TGT	T	7.004e^-4	0.876	INTRON mts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13961335	3R_13961335_INS [dm3] 3R_18135613_INS [dm6]	G	GA	7.007e^-4	0.876	DOWNSTREAM sr INTERGENIC
X	16927326	X_16927326_SNP [dm3] X_17033293_SNP [dm6]	C	T	7.027e^-4	0.876	UPSTREAM CG45002 INTRON CG45002
X	13682325	X_13682325_SNP [dm3] X_13788292_SNP [dm6]	C	G	7.038e^-4	0.876	INTRON inaE
3R	12657982	3R_12657982_SNP [dm3] 3R_16832260_SNP [dm6]	G	T	7.040e^-4	0.876	EXON iab-8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	1400701	2L_1400701_SNP [dm3] 2L_1400701_SNP [dm6]	T	C	7.064e^-4	0.876	INTRON lea
2L	10280996	2L_10280996_SNP [dm3] 2L_10280996_SNP [dm6]	A	G	7.097e^-4	0.876	UPSTREAM CG34043 DOWNSTREAM CG5604 INTERGENIC
2R	14741798	2R_14741798_SNP [dm3] 2R_18854293_SNP [dm6]	A	G	7.121e^-4	0.876	INTRON Jheh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4739624	3L_4739624_SNP [dm3] 3L_4739624_SNP [dm6]	G	C	7.129e^-4	0.876	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
3L	11513577	3L_11513577_DEL [dm3] 3L_11520477_DEL [dm6]	TTTATT	T	7.154e^-4	0.876	DOWNSTREAM CG11714 INTRON Fuca
2L	15347661	2L_15347661_SNP [dm3] 2L_15347661_SNP [dm6]	G	C	7.158e^-4	0.876	INTERGENIC
2L	12872178	2L_12872178_SNP [dm3] 2L_12872178_SNP [dm6]	G	C	7.167e^-4	0.876	INTERGENIC
2L	14028978	2L_14028978_SNP [dm3] 2L_14028978_SNP [dm6]	C	T	7.171e^-4	0.876	SYNONYMOUS_CODING CG4500 DOWNSTREAM CG18095
3R	13386183	3R_13386183_SNP [dm3] 3R_17560461_SNP [dm6]	C	A	7.186e^-4	0.876	INTRON Hmx	TF binding site BDTNP1_TFBS_dl
2L	16408739	2L_16408739_SNP [dm3] 2L_16408739_SNP [dm6]	A	G	7.186e^-4	0.876	INTRON CG5888
2R	14396584	2R_14396584_SNP [dm3] 2R_18509079_SNP [dm6]	C	T	7.186e^-4	0.876	INTERGENIC
2R	14396602	2R_14396602_SNP [dm3] 2R_18509097_SNP [dm6]	A	C	7.186e^-4	0.876	INTERGENIC
2R	14396612	2R_14396612_SNP [dm3] 2R_18509107_SNP [dm6]	A	T	7.186e^-4	0.876	INTERGENIC
2R	14396617	2R_14396617_DEL [dm3] 2R_18509112_DEL [dm6]	AAGACTCAAA	A	7.186e^-4	0.876	INTERGENIC
2R	8185101	2R_8185101_SNP [dm3] 2R_12297596_SNP [dm6]	G	A	7.186e^-4	0.876	SYNONYMOUS_CODING CG42700 EXON CR45271
2R	19331088	2R_19331088_SNP [dm3] 2R_23443565_SNP [dm6]	G	A	7.188e^-4	0.876	UPSTREAM CG43795 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16553991	3R_16553991_SNP [dm3] 3R_20728269_SNP [dm6]	C	T	7.188e^-4	0.876	INTERGENIC
2L	6536385	2L_6536385_SNP [dm3] 2L_6536385_SNP [dm6]	A	T	7.197e^-4	0.876	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	11315429	X_11315429_SNP [dm3] X_11421396_SNP [dm6]	G	T	7.202e^-4	0.876	INTERGENIC
2R	12630015	2R_12630015_SNP [dm3] 2R_16742510_SNP [dm6]	G	A	7.222e^-4	0.876	INTERGENIC
3L	6114411	3L_6114411_SNP [dm3] 3L_6121311_SNP [dm6]	G	T	7.222e^-4	0.876	INTRON Ets65A	TF binding site mE1_TFBS_HSA
2L	9405070	2L_9405070_INS [dm3] 2L_9405070_INS [dm6]	A	ACATACA	7.232e^-4	0.876	INTRON Shawl
X	20529187	X_20529187_SNP [dm3] X_20658160_SNP [dm6]	T	C	7.233e^-4	0.876	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
2L	8982257	2L_8982257_SNP [dm3] 2L_8982257_SNP [dm6]	A	T	7.236e^-4	0.876	DOWNSTREAM CG18662 INTRON CG13101
3R	9377279	3R_9377279_SNP [dm3] 3R_13551557_SNP [dm6]	T	G	7.238e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	420029	2L_420029_SNP [dm3] 2L_420029_SNP [dm6]	A	C	7.248e^-4	0.876	UTR_5_PRIME RpLP1 UPSTREAM CG13690 DOWNSTREAM CG11885	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	420230	2L_420230_DEL [dm3] 2L_420230_DEL [dm6]	GG	G	7.248e^-4	0.876	UPSTREAM CG13690 DOWNSTREAM CG11885 INTRON RpLP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19449095	3R_19449095_SNP [dm3] 3R_23623373_SNP [dm6]	C	A	7.248e^-4	0.876	INTRON CG31145
X	11074104	X_11074104_SNP [dm3] X_11180071_SNP [dm6]	G	T	7.276e^-4	0.876	INTERGENIC
2L	586915	2L_586915_SNP [dm3] 2L_586915_SNP [dm6]	A	T	7.288e^-4	0.876	INTRON Gsc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18966446	3R_18966446_SNP [dm3] 3R_23140724_SNP [dm6]	T	C	7.291e^-4	0.876	INTRON hh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16252985	2L_16252985_SNP [dm3] 2L_16252985_SNP [dm6]	A	G	7.294e^-4	0.876	INTRON PRL-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10906554	3L_10906554_SNP [dm3] 3L_10913454_SNP [dm6]	G	A	7.298e^-4	0.876	INTERGENIC
2R	10834858	2R_10834858_SNP [dm3] 2R_14947353_SNP [dm6]	C	T	7.318e^-4	0.876	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd
2L	10722470	2L_10722470_DEL [dm3] 2L_10722470_DEL [dm6]	TA	T	7.326e^-4	0.876	INTERGENIC
X	12237335	X_12237335_SNP [dm3] X_12343302_SNP [dm6]	T	C	7.329e^-4	0.876	INTERGENIC
X	20873918	X_20873918_SNP [dm3] X_21002891_SNP [dm6]	G	A	7.330e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20874677	X_20874677_SNP [dm3] X_21003650_SNP [dm6]	T	G	7.330e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15360021	3R_15360021_SNP [dm3] 3R_19534299_SNP [dm6]	G	C	7.344e^-4	0.876	INTRON Dys
X	12821487	X_12821487_SNP [dm3] X_12927454_SNP [dm6]	G	A	7.360e^-4	0.876	INTRON fne
X	7476972	X_7476972_SNP [dm3] X_7582939_SNP [dm6]	G	A	7.361e^-4	0.876	INTERGENIC	regulatory region REDfly_CRMs
X	22134063	X_22134063_SNP [dm3] X_22732227_SNP [dm6]	C	T	7.378e^-4	0.876	INTRON CR44997	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	7402770	2R_7402770_SNP [dm3] 2R_11515265_SNP [dm6]	C	A	7.381e^-4	0.876	INTERGENIC
X	1028623	X_1028623_INS [dm3] X_1134590_INS [dm6]	A	AA	7.381e^-4	0.876	UTR_5_PRIME CG3655	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1033414	X_1033414_SNP [dm3] X_1139381_SNP [dm6]	G	T	7.381e^-4	0.876	INTERGENIC
X	1036275	X_1036275_SNP [dm3] X_1142242_SNP [dm6]	A	T	7.381e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	1040409	X_1040409_SNP [dm3] X_1146376_SNP [dm6]	A	G	7.381e^-4	0.876	DOWNSTREAM CG14628 INTERGENIC	transposable element FlyBase
3R	9980514	3R_9980514_SNP [dm3] 3R_14154792_SNP [dm6]	T	C	7.387e^-4	0.876	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CG9722 & 1 other
3L	8169613	3L_8169613_SNP [dm3] 3L_8176513_SNP [dm6]	G	T	7.427e^-4	0.876	SYNONYMOUS_CODING Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11471572	2R_11471572_SNP [dm3] 2R_15584067_SNP [dm6]	G	C	7.498e^-4	0.876	INTERGENIC
2R	11471586	2R_11471586_SNP [dm3] 2R_15584081_SNP [dm6]	A	G	7.498e^-4	0.876	INTERGENIC
2R	11471591	2R_11471591_SNP [dm3] 2R_15584086_SNP [dm6]	A	T	7.498e^-4	0.876	INTERGENIC
2R	11471609	2R_11471609_SNP [dm3] 2R_15584104_SNP [dm6]	T	C	7.498e^-4	0.876	INTERGENIC
3R	13730113	3R_13730113_SNP [dm3] 3R_17904391_SNP [dm6]	T	C	7.511e^-4	0.876	INTRON Rim
2L	14545844	2L_14545844_SNP [dm3] 2L_14545844_SNP [dm6]	A	T	7.524e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	14554770	2L_14554770_SNP [dm3] 2L_14554770_SNP [dm6]	T	G	7.524e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	16680893	X_16680893_SNP [dm3] X_16786860_SNP [dm6]	G	T	7.533e^-4	0.876	UTR_5_PRIME CG9609 UPSTREAM Sap30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	16680963	X_16680963_INS [dm3] X_16786930_INS [dm6]	A	AACTTTATAACCA...	7.533e^-4	0.876	UTR_5_PRIME CG9609 UPSTREAM Sap30	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	16680966	X_16680966_SNP [dm3] X_16786933_SNP [dm6]	G	A	7.533e^-4	0.876	UTR_5_PRIME CG9609 UPSTREAM Sap30	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	16680967	X_16680967_SNP [dm3] X_16786934_SNP [dm6]	G	C	7.533e^-4	0.876	UTR_5_PRIME CG9609 UPSTREAM Sap30	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	7633618	3L_7633618_SNP [dm3] 3L_7640518_SNP [dm6]	A	C	7.536e^-4	0.876	UPSTREAM CG33276 DOWNSTREAM CG33275 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25024504	3R_25024504_SNP [dm3] 3R_29198782_SNP [dm6]	G	A	7.544e^-4	0.876	INTRON CG14515
3R	25024506	3R_25024506_SNP [dm3] 3R_29198784_SNP [dm6]	T	A	7.544e^-4	0.876	INTRON CG14515
2L	10622875	2L_10622875_SNP [dm3] 2L_10622875_SNP [dm6]	C	A	7.546e^-4	0.876	INTRON Trim9
2L	4679910	2L_4679910_SNP [dm3] 2L_4679910_SNP [dm6]	A	C	7.549e^-4	0.876	INTERGENIC
3L	2537737	3L_2537737_SNP [dm3] 3L_2537737_SNP [dm6]	C	T	7.563e^-4	0.876	INTRON Spn
X	14375754	X_14375754_SNP [dm3] X_14481721_SNP [dm6]	A	C	7.567e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14375762	X_14375762_SNP [dm3] X_14481729_SNP [dm6]	A	G	7.567e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14375788	X_14375788_SNP [dm3] X_14481755_SNP [dm6]	G	C	7.567e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20136566	2L_20136566_SNP [dm3] 2L_20136566_SNP [dm6]	G	T	7.588e^-4	0.876	INTERGENIC
2R	13873992	2R_13873992_SNP [dm3] 2R_17986487_SNP [dm6]	G	C	7.598e^-4	0.876	INTRON dpr13
2R	8368007	2R_8368007_SNP [dm3] 2R_12480502_SNP [dm6]	T	G	7.620e^-4	0.876	INTRON Dh44-R2
2L	4988103	2L_4988103_SNP [dm3] 2L_4988103_SNP [dm6]	T	G	7.622e^-4	0.876	INTRON CG34126	TF binding site mE1_TFBS_sens
3R	9403112	3R_9403112_SNP [dm3] 3R_13577390_SNP [dm6]	C	G	7.622e^-4	0.876	INTERGENIC
3R	9403200	3R_9403200_SNP [dm3] 3R_13577478_SNP [dm6]	G	T	7.622e^-4	0.876	INTERGENIC
3R	9961959	3R_9961959_SNP [dm3] 3R_14136237_SNP [dm6]	G	A	7.632e^-4	0.876	INTERGENIC
3R	9961965	3R_9961965_SNP [dm3] 3R_14136243_SNP [dm6]	A	G	7.632e^-4	0.876	INTERGENIC
3R	9962694	3R_9962694_SNP [dm3] 3R_14136972_SNP [dm6]	C	A	7.632e^-4	0.876	INTERGENIC
X	2312230	X_2312230_SNP [dm3] X_2418197_SNP [dm6]	T	A	7.638e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_sens
2L	15114078	2L_15114078_SNP [dm3] 2L_15114078_SNP [dm6]	A	C	7.647e^-4	0.876	SYNONYMOUS_CODING stc DOWNSTREAM CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
3R	1250247	3R_1250247_SNP [dm3] 3R_5424525_SNP [dm6]	C	A	7.653e^-4	0.876	DOWNSTREAM CG12147 INTRON CG14669
X	4087136	X_4087136_SNP [dm3] X_4193103_SNP [dm6]	C	G	7.654e^-4	0.876	INTRON Fas2	regulatory region REDfly_CRMs
2R	9464668	2R_9464668_SNP [dm3] 2R_13577163_SNP [dm6]	G	C	7.659e^-4	0.876	UPSTREAM CR44366 EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll
2R	9464762	2R_9464762_SNP [dm3] 2R_13577257_SNP [dm6]	A	G	7.659e^-4	0.876	UPSTREAM CR44366 EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll
2R	9464798	2R_9464798_SNP [dm3] 2R_13577293_SNP [dm6]	G	A	7.659e^-4	0.876	UPSTREAM CR44366 EXON CR44365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll
2R	9465233	2R_9465233_SNP [dm3] 2R_13577728_SNP [dm6]	A	T	7.659e^-4	0.876	UPSTREAM CR44366 DOWNSTREAM CR44365 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	2045669	X_2045669_INS [dm3] X_2151636_INS [dm6]	A	ATATAAA	7.676e^-4	0.876	INTRON wapl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1650910	2L_1650910_SNP [dm3] 2L_1650910_SNP [dm6]	G	A	7.685e^-4	0.876	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11039792	2R_11039792_SNP [dm3] 2R_15152287_SNP [dm6]	T	A	7.695e^-4	0.876	INTERGENIC
3R	9760109	3R_9760109_SNP [dm3] 3R_13934387_SNP [dm6]	C	T	7.698e^-4	0.876	INTERGENIC
3R	27454593	3R_27454593_SNP [dm3] 3R_31628871_SNP [dm6]	T	C	7.701e^-4	0.876	INTRON kek6
3L	3727699	3L_3727699_SNP [dm3] 3L_3727699_SNP [dm6]	C	T	7.703e^-4	0.876	INTRON CG32264
3R	9380947	3R_9380947_SNP [dm3] 3R_13555225_SNP [dm6]	C	A	7.712e^-4	0.876	INTERGENIC
3R	816700	3R_816700_SNP [dm3] 3R_4990978_SNP [dm6]	G	A	7.724e^-4	0.876	INTRON CG2022	TF binding site mE1_TFBS_cad
2L	3713966	2L_3713966_SNP [dm3] 2L_3713966_SNP [dm6]	A	G	7.750e^-4	0.876	UPSTREAM CG31955 & 1 other INTRON CG2818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4295584	2L_4295584_SNP [dm3] 2L_4295584_SNP [dm6]	C	T	7.761e^-4	0.876	SYNONYMOUS_CODING tutl	TF binding site mE1_TFBS_chinmo
X	12897939	X_12897939_SNP [dm3] X_13003906_SNP [dm6]	C	A	7.761e^-4	0.876	DOWNSTREAM CG15719 INTRON rad
3R	23832184	3R_23832184_SNP [dm3] 3R_28006462_SNP [dm6]	C	T	7.763e^-4	0.876	INTERGENIC
X	17171223	X_17171223_SNP [dm3] X_17277190_SNP [dm6]	G	A	7.763e^-4	0.876	INTRON f
3R	25417415	3R_25417415_SNP [dm3] 3R_29591693_SNP [dm6]	T	C	7.777e^-4	0.876	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	14680693	3R_14680693_SNP [dm3] 3R_18854971_SNP [dm6]	T	A	7.778e^-4	0.876	INTERGENIC
3L	6114346	3L_6114346_SNP [dm3] 3L_6121246_SNP [dm6]	T	G	7.782e^-4	0.876	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3L	6114407	3L_6114407_SNP [dm3] 3L_6121307_SNP [dm6]	G	A	7.782e^-4	0.876	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3L	6114418	3L_6114418_SNP [dm3] 3L_6121318_SNP [dm6]	T	A	7.782e^-4	0.876	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3L	6114430	3L_6114430_SNP [dm3] 3L_6121330_SNP [dm6]	A	G	7.782e^-4	0.876	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3L	6114432	3L_6114432_SNP [dm3] 3L_6121332_SNP [dm6]	T	A	7.782e^-4	0.876	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3L	6114447	3L_6114447_SNP [dm3] 3L_6121347_SNP [dm6]	C	T	7.782e^-4	0.876	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3L	6114468	3L_6114468_MNP [dm3] 3L_6121368_MNP [dm6]	GAA	AGT	7.782e^-4	0.876	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3L	6114483	3L_6114483_SNP [dm3] 3L_6121383_SNP [dm6]	G	A	7.782e^-4	0.876	INTRON Ets65A	TF binding site mE1_TFBS_HSA
3L	6114486	3L_6114486_SNP [dm3] 3L_6121386_SNP [dm6]	T	A	7.782e^-4	0.876	INTRON Ets65A	TF binding site mE1_TFBS_HSA
2R	6636046	2R_6636046_SNP [dm3] 2R_10748541_SNP [dm6]	A	C	7.789e^-4	0.876	INTRON CG33144
X	20876509	X_20876509_SNP [dm3] X_21005482_SNP [dm6]	C	A	7.796e^-4	0.876	INTERGENIC
X	20863350	X_20863350_SNP [dm3] X_20992323_SNP [dm6]	C	T	7.812e^-4	0.876	INTERGENIC
3L	3969919	3L_3969919_SNP [dm3] 3L_3969919_SNP [dm6]	A	T	7.812e^-4	0.876	INTERGENIC
X	7810944	X_7810944_SNP [dm3] X_7916911_SNP [dm6]	G	A	7.815e^-4	0.876	INTRON snz
X	20878126	X_20878126_SNP [dm3] X_21007099_SNP [dm6]	C	A	7.820e^-4	0.876	INTERGENIC
X	6396781	X_6396781_SNP [dm3] X_6502748_SNP [dm6]	A	T	7.829e^-4	0.876	INTRON CG42340
3R	16307095	3R_16307095_SNP [dm3] 3R_20481373_SNP [dm6]	C	A	7.846e^-4	0.876	UTR_5_PRIME Gfrl INTRON Gfrl
2R	9440604	2R_9440604_SNP [dm3] 2R_13553099_SNP [dm6]	A	G	7.853e^-4	0.876	SYNONYMOUS_CODING CG33156 UPSTREAM CG33156 & 1 other
3L	13840106	3L_13840106_SNP [dm3] 3L_13847006_SNP [dm6]	T	C	7.855e^-4	0.876	INTRON Hml
2L	14722202	2L_14722202_SNP [dm3] 2L_14722202_SNP [dm6]	T	C	7.869e^-4	0.876	INTERGENIC
3L	10219732	3L_10219732_INS [dm3] 3L_10226632_INS [dm6]	T	TTTTTAT	7.899e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219734	3L_10219734_SNP [dm3] 3L_10226634_SNP [dm6]	C	A	7.899e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219737	3L_10219737_INS [dm3] 3L_10226637_INS [dm6]	G	GTATTT	7.899e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219743	3L_10219743_SNP [dm3] 3L_10226643_SNP [dm6]	T	A	7.899e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219744	3L_10219744_SNP [dm3] 3L_10226644_SNP [dm6]	A	C	7.899e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219750	3L_10219750_INS [dm3] 3L_10226650_INS [dm6]	A	AAGTTCCTCAAT...	7.899e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219757	3L_10219757_MNP [dm3] 3L_10226657_MNP [dm6]	CAA	TGT	7.899e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219761	3L_10219761_INS [dm3] 3L_10226661_INS [dm6]	T	TATATACAGC	7.899e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219790	3L_10219790_SNP [dm3] 3L_10226690_SNP [dm6]	A	G	7.899e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15592703	3L_15592703_SNP [dm3] 3L_15599603_SNP [dm6]	C	T	7.902e^-4	0.876	INTRON RhoGAP71E
3L	12594041	3L_12594041_SNP [dm3] 3L_12600941_SNP [dm6]	A	C	7.906e^-4	0.876	INTERGENIC
3R	19552624	3R_19552624_SNP [dm3] 3R_23726902_SNP [dm6]	T	C	7.924e^-4	0.876	INTRON CG10365
2L	8763048	2L_8763048_SNP [dm3] 2L_8763048_SNP [dm6]	T	A	7.932e^-4	0.876	INTERGENIC
X	10401483	X_10401483_SNP [dm3] X_10507450_SNP [dm6]	G	A	7.935e^-4	0.876	INTRON spri
X	14382716	X_14382716_SNP [dm3] X_14488683_SNP [dm6]	T	C	7.937e^-4	0.876	INTERGENIC
3R	9196465	3R_9196465_SNP [dm3] 3R_13370743_SNP [dm6]	C	A	7.945e^-4	0.876	DOWNSTREAM CheA87a INTRON Lip3
3R	9196475	3R_9196475_SNP [dm3] 3R_13370753_SNP [dm6]	T	C	7.945e^-4	0.876	DOWNSTREAM CheA87a INTRON Lip3
3R	16396602	3R_16396602_SNP [dm3] 3R_20570880_SNP [dm6]	A	T	7.951e^-4	0.876	INTRON CG5191
3R	16396608	3R_16396608_SNP [dm3] 3R_20570886_SNP [dm6]	C	T	7.951e^-4	0.876	INTRON CG5191
3L	17333251	3L_17333251_SNP [dm3] 3L_17340151_SNP [dm6]	A	G	7.996e^-4	0.876	UPSTREAM CG6479 & 1 other DOWNSTREAM CG13727 INTERGENIC
2R	19010481	2R_19010481_SNP [dm3] 2R_23122958_SNP [dm6]	T	A	8.000e^-4	0.876	DOWNSTREAM Klp59C INTERGENIC
3L	14642099	3L_14642099_SNP [dm3] 3L_14648999_SNP [dm6]	T	C	8.007e^-4	0.876	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	14024492	2L_14024492_SNP [dm3] 2L_14024492_SNP [dm6]	A	T	8.008e^-4	0.876	UPSTREAM CR31840 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15428880	X_15428880_SNP [dm3] X_15534847_SNP [dm6]	G	C	8.024e^-4	0.876	INTRON Ac13E
2L	10722415	2L_10722415_SNP [dm3] 2L_10722415_SNP [dm6]	T	C	8.025e^-4	0.876	INTERGENIC
X	4251435	X_4251435_SNP [dm3] X_4357402_SNP [dm6]	C	A	8.025e^-4	0.876	NON_SYNONYMOUS_CODING norpA
3R	4719116	3R_4719116_SNP [dm3] 3R_8893394_SNP [dm6]	C	A	8.030e^-4	0.876	INTRON pyd
2R	10687961	2R_10687961_DEL [dm3] 2R_14800456_DEL [dm6]	GG	G	8.040e^-4	0.876	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	12408130	2R_12408130_SNP [dm3] 2R_16520625_SNP [dm6]	C	T	8.045e^-4	0.876	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	7986614	3L_7986614_SNP [dm3] 3L_7993514_SNP [dm6]	C	G	8.053e^-4	0.876	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	7973850	3R_7973850_SNP [dm3] 3R_12148128_SNP [dm6]	C	T	8.080e^-4	0.876	INTRON dpr15
2L	9862237	2L_9862237_SNP [dm3] 2L_9862237_SNP [dm6]	G	T	8.089e^-4	0.876	INTRON nAChRalpha6
2R	12583235	2R_12583235_SNP [dm3] 2R_16695730_SNP [dm6]	C	A	8.100e^-4	0.876	INTRON CG30463
3L	5667055	3L_5667055_SNP [dm3] 3L_5673955_SNP [dm6]	A	T	8.133e^-4	0.876	NON_SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17559641	3R_17559641_SNP [dm3] 3R_21733919_SNP [dm6]	C	T	8.136e^-4	0.876	INTERGENIC
3R	17559683	3R_17559683_SNP [dm3] 3R_21733961_SNP [dm6]	A	T	8.136e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11980266	2R_11980266_SNP [dm3] 2R_16092761_SNP [dm6]	G	A	8.171e^-4	0.876	INTRON Dg
2L	13500721	2L_13500721_SNP [dm3] 2L_13500721_SNP [dm6]	G	A	8.175e^-4	0.876	UTR_3_PRIME B4 DOWNSTREAM CG42784	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	15274178	2R_15274178_SNP [dm3] 2R_19386673_SNP [dm6]	G	C	8.193e^-4	0.876	NON_SYNONYMOUS_CODING CG10081
X	12821480	X_12821480_SNP [dm3] X_12927447_SNP [dm6]	T	C	8.195e^-4	0.876	INTRON fne
2L	4855275	2L_4855275_SNP [dm3] 2L_4855275_SNP [dm6]	T	G	8.196e^-4	0.876	INTRON pog
2L	5423684	2L_5423684_SNP [dm3] 2L_5423684_SNP [dm6]	T	G	8.209e^-4	0.876	INTERGENIC
2L	5423891	2L_5423891_SNP [dm3] 2L_5423891_SNP [dm6]	C	T	8.209e^-4	0.876	INTERGENIC
X	10401495	X_10401495_SNP [dm3] X_10507462_SNP [dm6]	C	A	8.210e^-4	0.876	INTRON spri
2L	4214658	2L_4214658_SNP [dm3] 2L_4214658_SNP [dm6]	G	A	8.212e^-4	0.876	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10834874	2R_10834874_SNP [dm3] 2R_14947369_SNP [dm6]	A	C	8.216e^-4	0.876	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd
2R	10834891	2R_10834891_SNP [dm3] 2R_14947386_SNP [dm6]	C	T	8.216e^-4	0.876	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd
2L	14367962	2L_14367962_SNP [dm3] 2L_14367962_SNP [dm6]	G	A	8.219e^-4	0.876	INTERGENIC
2R	17985974	2R_17985974_SNP [dm3] 2R_22098469_SNP [dm6]	T	G	8.221e^-4	0.876	INTRON CG11073	TF binding site BDTNP1_TFBS_dl
X	3430331	X_3430331_INS [dm3] X_3536298_INS [dm6]	T	TT	8.226e^-4	0.876	INTRON CG32791
2R	12757677	2R_12757677_DEL [dm3] 2R_16870172_DEL [dm6]	ATCA	A	8.229e^-4	0.876	DOWNSTREAM Ef1beta INTRON CG6426
2L	4353444	2L_4353444_SNP [dm3] 2L_4353444_SNP [dm6]	C	T	8.229e^-4	0.876	SYNONYMOUS_CODING CG15429	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10752759	2L_10752759_SNP [dm3] 2L_10752759_SNP [dm6]	T	A	8.245e^-4	0.876	INTRON CG17124	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
3L	22888119	3L_22888119_SNP [dm3] 3L_22895019_SNP [dm6]	T	C	8.249e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	15102726	2L_15102726_SNP [dm3] 2L_15102726_SNP [dm6]	C	T	8.252e^-4	0.876	INTERGENIC
2R	12094103	2R_12094103_SNP [dm3] 2R_16206598_SNP [dm6]	G	T	8.253e^-4	0.876	UPSTREAM mrj INTRON mrj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15551355	2R_15551355_SNP [dm3] 2R_19663850_SNP [dm6]	A	T	8.254e^-4	0.876	DOWNSTREAM hrg & 1 other INTERGENIC
3R	6040490	3R_6040490_SNP [dm3] 3R_10214768_SNP [dm6]	G	T	8.265e^-4	0.876	INTRON Syn
X	12821446	X_12821446_SNP [dm3] X_12927413_SNP [dm6]	A	G	8.286e^-4	0.876	INTRON fne	TF binding site BDTNP1_TFBS_dl
X	12821464	X_12821464_SNP [dm3] X_12927431_SNP [dm6]	A	G	8.286e^-4	0.876	INTRON fne
2R	15841425	2R_15841425_SNP [dm3] 2R_19953920_SNP [dm6]	G	T	8.297e^-4	0.876	NON_SYNONYMOUS_CODING CG44622
3L	10836460	3L_10836460_INS [dm3] 3L_10843360_INS [dm6]	A	AA	8.314e^-4	0.876	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26784086	3R_26784086_SNP [dm3] 3R_30958364_SNP [dm6]	A	G	8.315e^-4	0.876	INTERGENIC
2R	10834879	2R_10834879_SNP [dm3] 2R_14947374_SNP [dm6]	C	T	8.339e^-4	0.876	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd
3L	8169396	3L_8169396_SNP [dm3] 3L_8176296_SNP [dm6]	A	T	8.346e^-4	0.876	UTR_3_PRIME Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	8170426	3L_8170426_SNP [dm3] 3L_8177326_SNP [dm6]	T	C	8.346e^-4	0.876	SYNONYMOUS_CODING Nmt	TF binding site mE1_TFBS_sens
3L	8170480	3L_8170480_SNP [dm3] 3L_8177380_SNP [dm6]	G	A	8.346e^-4	0.876	SYNONYMOUS_CODING Nmt	TF binding site mE1_TFBS_sens
2R	16317065	2R_16317065_SNP [dm3] 2R_20429560_SNP [dm6]	A	C	8.357e^-4	0.876	UTR_5_PRIME CG12484
3L	15607143	3L_15607143_SNP [dm3] 3L_15614043_SNP [dm6]	C	T	8.378e^-4	0.876	INTRON comm3
X	7804462	X_7804462_INS [dm3] X_7910429_INS [dm6]	C	CTC	8.383e^-4	0.876	INTRON CG1444
2L	5058168	2L_5058168_SNP [dm3] 2L_5058168_SNP [dm6]	G	A	8.385e^-4	0.876	UTR_5_PRIME CG31918 DOWNSTREAM Rpn11	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	1112505	3L_1112505_DEL [dm3] 3L_1112505_DEL [dm6]	CTAAA	C	8.388e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25024464	3R_25024464_SNP [dm3] 3R_29198742_SNP [dm6]	C	A	8.391e^-4	0.876	INTRON CG14515
3R	17815058	3R_17815058_DEL [dm3] 3R_21989336_DEL [dm6]	GGAGCATAATAAATTTAA...	G	8.392e^-4	0.876	INTRON Eip93F
3L	18119927	3L_18119927_SNP [dm3] 3L_18126827_SNP [dm6]	T	C	8.394e^-4	0.876	INTERGENIC
3R	12211228	3R_12211228_SNP [dm3] 3R_16385506_SNP [dm6]	A	G	8.397e^-4	0.876	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	13292552	X_13292552_SNP [dm3] X_13398519_SNP [dm6]	T	C	8.400e^-4	0.876	INTRON CG1673
3R	25854602	3R_25854602_SNP [dm3] 3R_30028880_SNP [dm6]	C	T	8.402e^-4	0.876	INTRON Axn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7422972	3L_7422972_SNP [dm3] 3L_7429872_SNP [dm6]	A	T	8.402e^-4	0.876	INTRON CG42458
X	17673073	X_17673073_SNP [dm3] X_17779040_SNP [dm6]	G	A	8.429e^-4	0.876	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	11038945	2R_11038945_SNP [dm3] 2R_15151440_SNP [dm6]	A	G	8.434e^-4	0.876	INTERGENIC
2L	3678343	2L_3678343_SNP [dm3] 2L_3678343_SNP [dm6]	T	A	8.455e^-4	0.876	INTRON CG34340
2L	15115433	2L_15115433_SNP [dm3] 2L_15115433_SNP [dm6]	C	T	8.461e^-4	0.876	SYNONYMOUS_CODING stc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14911502	3L_14911502_SNP [dm3] 3L_14918402_SNP [dm6]	G	T	8.462e^-4	0.876	INTRON DCX-EMAP
3R	13961332	3R_13961332_SNP [dm3] 3R_18135610_SNP [dm6]	G	T	8.466e^-4	0.876	DOWNSTREAM sr INTERGENIC
3L	14443500	3L_14443500_SNP [dm3] 3L_14450400_SNP [dm6]	G	C	8.479e^-4	0.876	INTRON bbg
2R	12688235	2R_12688235_SNP [dm3] 2R_16800730_SNP [dm6]	C	A	8.481e^-4	0.876	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	10140044	2R_10140044_SNP [dm3] 2R_14252539_SNP [dm6]	G	A	8.483e^-4	0.876	UTR_3_PRIME Mdr50 DOWNSTREAM Hsc70-5
X	20876487	X_20876487_SNP [dm3] X_21005460_SNP [dm6]	A	G	8.489e^-4	0.876	INTERGENIC
2L	18890366	2L_18890366_SNP [dm3] 2L_18890366_SNP [dm6]	A	T	8.513e^-4	0.876	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15707777	2R_15707777_SNP [dm3] 2R_19820272_SNP [dm6]	C	T	8.520e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
2L	4171968	2L_4171968_SNP [dm3] 2L_4171968_SNP [dm6]	A	G	8.533e^-4	0.876	INTERGENIC

By genomic position
Variant impact
Gene name

sonsTotal phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results