DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.429e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1164 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2622009	3L_2622009_SNP [dm3] 3L_2622009_SNP [dm6]	A	T	2.321e^-6	0.82	INTRON Pxn
3L	2659050	3L_2659050_SNP [dm3] 3L_2659050_SNP [dm6]	T	C	2.638e^-6	0.82	SYNONYMOUS_CODING Fife UTR_3_PRIME Fife UPSTREAM CG33233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
3L	8246620	3L_8246620_SNP [dm3] 3L_8253520_SNP [dm6]	A	T	3.348e^-6	0.82	INTRON Dscam4
X	3899950	X_3899950_SNP [dm3] X_4005917_SNP [dm6]	A	G	7.378e^-6	0.82	INTERGENIC
2R	8782901	2R_8782901_SNP [dm3] 2R_12895396_SNP [dm6]	A	G	8.956e^-6	0.82	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2350486	2L_2350486_SNP [dm3] 2L_2350486_SNP [dm6]	T	C	1.148e^-5	0.82	INTRON CG9967 & 1 other
3L	970831	3L_970831_SNP [dm3] 3L_970831_SNP [dm6]	A	G	1.195e^-5	0.82	INTRON Glut1
2R	11707989	2R_11707989_SNP [dm3] 2R_15820484_SNP [dm6]	T	A	1.263e^-5	0.82	INTRON tun & 1 other
3L	7984136	3L_7984136_SNP [dm3] 3L_7991036_SNP [dm6]	T	C	1.388e^-5	0.82	INTRON nmo	TF binding site mE1_TFBS_cnc
3R	24366641	3R_24366641_SNP [dm3] 3R_28540919_SNP [dm6]	G	A	1.476e^-5	0.82	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17693124	3L_17693124_SNP [dm3] 3L_17700024_SNP [dm6]	G	T	2.078e^-5	0.82	INTRON Ccn
2L	6176837	2L_6176837_SNP [dm3] 2L_6176837_SNP [dm6]	C	T	2.378e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6508615	2R_6508615_SNP [dm3] 2R_10621110_SNP [dm6]	A	G	2.482e^-5	0.82	INTRON CG11883
3R	11140143	3R_11140143_SNP [dm3] 3R_15314421_SNP [dm6]	T	C	2.482e^-5	0.82	INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6379235	2R_6379235_SNP [dm3] 2R_10491730_SNP [dm6]	C	T	2.489e^-5	0.82	UTR_3_PRIME lola INTRON lola
2R	6508001	2R_6508001_SNP [dm3] 2R_10620496_SNP [dm6]	A	C	2.489e^-5	0.82	INTRON CG11883
3L	1605240	3L_1605240_SNP [dm3] 3L_1605240_SNP [dm6]	A	C	2.983e^-5	0.82	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
3L	14642038	3L_14642038_SNP [dm3] 3L_14648938_SNP [dm6]	T	A	3.020e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4427850	2L_4427850_SNP [dm3] 2L_4427850_SNP [dm6]	A	G	3.022e^-5	0.82	INTRON CG15431
3L	5956442	3L_5956442_SNP [dm3] 3L_5963342_SNP [dm6]	G	C	3.054e^-5	0.82	INTERGENIC
2R	11059590	2R_11059590_SNP [dm3] 2R_15172085_SNP [dm6]	T	C	3.068e^-5	0.82	INTRON igl
2R	6508603	2R_6508603_SNP [dm3] 2R_10621098_SNP [dm6]	T	G	3.068e^-5	0.82	INTRON CG11883
3L	14642070	3L_14642070_SNP [dm3] 3L_14648970_SNP [dm6]	C	T	3.185e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642095	3L_14642095_SNP [dm3] 3L_14648995_SNP [dm6]	T	A	3.185e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642098	3L_14642098_SNP [dm3] 3L_14648998_SNP [dm6]	A	T	3.185e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642110	3L_14642110_SNP [dm3] 3L_14649010_SNP [dm6]	T	C	3.185e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3039454	3L_3039454_SNP [dm3] 3L_3039454_SNP [dm6]	T	C	3.375e^-5	0.82	SYNONYMOUS_CODING CG2162	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	16739498	3R_16739498_SNP [dm3] 3R_20913776_SNP [dm6]	T	C	3.375e^-5	0.82	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7909123	3L_7909123_SNP [dm3] 3L_7916023_SNP [dm6]	G	C	3.497e^-5	0.82	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7944635	2L_7944635_SNP [dm3] 2L_7944635_SNP [dm6]	C	T	3.526e^-5	0.82	INTRON Snoo
3L	9088728	3L_9088728_SNP [dm3] 3L_9095628_SNP [dm6]	C	T	3.624e^-5	0.82	DOWNSTREAM CG32032 INTERGENIC
2R	16309182	2R_16309182_SNP [dm3] 2R_20421677_SNP [dm6]	A	G	3.720e^-5	0.82	INTERGENIC
3R	26119375	3R_26119375_SNP [dm3] 3R_30293653_SNP [dm6]	T	A	3.864e^-5	0.82	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14642039	3L_14642039_SNP [dm3] 3L_14648939_SNP [dm6]	T	G	4.029e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642051	3L_14642051_SNP [dm3] 3L_14648951_SNP [dm6]	T	C	4.029e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642089	3L_14642089_SNP [dm3] 3L_14648989_SNP [dm6]	A	T	4.142e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642055	3L_14642055_SNP [dm3] 3L_14648955_SNP [dm6]	A	T	4.145e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642058	3L_14642058_SNP [dm3] 3L_14648958_SNP [dm6]	G	A	4.145e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642078	3L_14642078_MNP [dm3] 3L_14648978_MNP [dm6]	GGG	AAA	4.145e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14641921	3L_14641921_SNP [dm3] 3L_14648821_SNP [dm6]	A	G	4.283e^-5	0.82	INTRON dlp	TF binding site mE1_TFBS_HSA
2L	492383	2L_492383_SNP [dm3] 2L_492383_SNP [dm6]	C	T	4.296e^-5	0.82	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7909156	3L_7909156_SNP [dm3] 3L_7916056_SNP [dm6]	C	T	4.341e^-5	0.82	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	492331	2L_492331_SNP [dm3] 2L_492331_SNP [dm6]	A	T	4.568e^-5	0.82	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	493550	2L_493550_SNP [dm3] 2L_493550_SNP [dm6]	G	A	4.568e^-5	0.82	INTRON ush
2L	5954899	2L_5954899_SNP [dm3] 2L_5954899_SNP [dm6]	G	A	4.568e^-5	0.82	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
X	17304679	X_17304679_DEL [dm3] X_17410646_DEL [dm6]	CC	C	4.568e^-5	0.82	INTERGENIC
3R	12384171	3R_12384171_SNP [dm3] 3R_16558449_SNP [dm6]	C	T	4.617e^-5	0.82	INTRON CG42342
3L	14642109	3L_14642109_SNP [dm3] 3L_14649009_SNP [dm6]	A	T	4.771e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642171	3L_14642171_SNP [dm3] 3L_14649071_SNP [dm6]	A	T	4.896e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2622023	3L_2622023_INS [dm3] 3L_2622023_INS [dm6]	A	AGGTCTCA	4.923e^-5	0.82	INTRON Pxn
2L	9585406	2L_9585406_SNP [dm3] 2L_9585406_SNP [dm6]	C	G	4.972e^-5	0.82	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	12456810	2R_12456810_SNP [dm3] 2R_16569305_SNP [dm6]	A	G	5.193e^-5	0.82	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2627277	3L_2627277_SNP [dm3] 3L_2627277_SNP [dm6]	A	G	5.222e^-5	0.82	INTRON Pxn
X	16443395	X_16443395_SNP [dm3] X_16549362_SNP [dm6]	A	G	5.238e^-5	0.82	SYNONYMOUS_CODING Arp2
2R	6954898	2R_6954898_SNP [dm3] 2R_11067393_SNP [dm6]	T	C	5.444e^-5	0.82	INTRON luna	TF binding site mE1_TFBS_chinmo
2L	15343669	2L_15343669_SNP [dm3] 2L_15343669_SNP [dm6]	A	T	5.462e^-5	0.82	INTERGENIC
2L	15343684	2L_15343684_MNP [dm3] 2L_15343684_MNP [dm6]	GTT	ACA	5.462e^-5	0.82	INTERGENIC
2L	15343691	2L_15343691_DEL [dm3] 2L_15343691_DEL [dm6]	CAC	A	5.462e^-5	0.82	INTERGENIC
3R	26119383	3R_26119383_SNP [dm3] 3R_30293661_SNP [dm6]	G	C	5.876e^-5	0.82	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25834938	3R_25834938_SNP [dm3] 3R_30009216_SNP [dm6]	G	A	6.021e^-5	0.82	UPSTREAM CG7912 INTRON Nlp
3L	14642063	3L_14642063_SNP [dm3] 3L_14648963_SNP [dm6]	T	G	6.302e^-5	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18741395	2R_18741395_SNP [dm3] 2R_22853872_SNP [dm6]	T	G	6.906e^-5	0.82	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18741492	2R_18741492_SNP [dm3] 2R_22853969_SNP [dm6]	G	A	6.906e^-5	0.82	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7986614	3L_7986614_SNP [dm3] 3L_7993514_SNP [dm6]	C	G	6.926e^-5	0.82	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	11039807	2R_11039807_SNP [dm3] 2R_15152302_SNP [dm6]	G	T	7.055e^-5	0.82	INTERGENIC
3R	9784390	3R_9784390_SNP [dm3] 3R_13958668_SNP [dm6]	T	A	7.493e^-5	0.82	UPSTREAM Ipp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9784391	3R_9784391_SNP [dm3] 3R_13958669_SNP [dm6]	T	A	7.493e^-5	0.82	UPSTREAM Ipp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18875209	2L_18875209_SNP [dm3] 2L_18875209_SNP [dm6]	T	C	7.551e^-5	0.82	INTRON tup	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12778968	3L_12778968_SNP [dm3] 3L_12785868_SNP [dm6]	T	C	7.625e^-5	0.82	SPLICE_SITE_REGION Atg1 INTRON Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19517597	X_19517597_SNP [dm3] X_19623564_SNP [dm6]	G	A	7.872e^-5	0.82	UPSTREAM NAA20 INTRON MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12456846	2R_12456846_SNP [dm3] 2R_16569341_SNP [dm6]	G	A	7.936e^-5	0.82	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13724195	3L_13724195_SNP [dm3] 3L_13731095_SNP [dm6]	C	T	8.232e^-5	0.82	INTRON bru-3
X	12130287	X_12130287_SNP [dm3] X_12236254_SNP [dm6]	A	C	8.408e^-5	0.82	UPSTREAM CG32655 INTRON Ten-a
2L	1196368	2L_1196368_SNP [dm3] 2L_1196368_SNP [dm6]	C	T	8.564e^-5	0.82	SYNONYMOUS_CODING CG5001
2L	11361516	2L_11361516_SNP [dm3] 2L_11361516_SNP [dm6]	T	C	8.641e^-5	0.82	INTRON salr	regulatory region REDfly_CRMs
2L	15343672	2L_15343672_DEL [dm3] 2L_15343672_DEL [dm6]	AAAT	A	8.646e^-5	0.82	INTERGENIC
2L	15343677	2L_15343677_SNP [dm3] 2L_15343677_SNP [dm6]	A	T	8.646e^-5	0.82	INTERGENIC
2L	15343679	2L_15343679_SNP [dm3] 2L_15343679_SNP [dm6]	T	C	8.646e^-5	0.82	INTERGENIC
2L	15343680	2L_15343680_SNP [dm3] 2L_15343680_SNP [dm6]	T	A	8.646e^-5	0.82	INTERGENIC
2L	15343689	2L_15343689_SNP [dm3] 2L_15343689_SNP [dm6]	T	A	8.646e^-5	0.82	INTERGENIC
2R	18180962	2R_18180962_SNP [dm3] 2R_22293457_SNP [dm6]	T	G	8.805e^-5	0.82	UTR_5_PRIME CG5819 INTRON CG5819
3R	15995537	3R_15995537_SNP [dm3] 3R_20169815_SNP [dm6]	A	G	9.232e^-5	0.82	INTRON CG5023
3L	2659386	3L_2659386_SNP [dm3] 3L_2659386_SNP [dm6]	T	G	9.400e^-5	0.82	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
3L	6600205	3L_6600205_SNP [dm3] 3L_6607105_SNP [dm6]	T	G	9.400e^-5	0.82	INTRON CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	964153	3L_964153_SNP [dm3] 3L_964153_SNP [dm6]	T	C	9.441e^-5	0.82	INTRON Glut1
3L	964192	3L_964192_SNP [dm3] 3L_964192_SNP [dm6]	T	C	9.441e^-5	0.82	INTRON Glut1
3L	964204	3L_964204_SNP [dm3] 3L_964204_SNP [dm6]	G	A	9.441e^-5	0.82	INTRON Glut1
2L	19079753	2L_19079753_SNP [dm3] 2L_19079753_SNP [dm6]	C	A	9.460e^-5	0.82	UTR_3_PRIME Lim3 UPSTREAM CG10700	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6396781	X_6396781_SNP [dm3] X_6502748_SNP [dm6]	A	T	9.468e^-5	0.82	INTRON CG42340
3R	5297393	3R_5297393_SNP [dm3] 3R_9471671_SNP [dm6]	C	T	9.497e^-5	0.82	SYNONYMOUS_CODING CG16779	TF binding site mE1_TFBS_chinmo
3R	26119373	3R_26119373_SNP [dm3] 3R_30293651_SNP [dm6]	G	C	9.510e^-5	0.82	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2463585	2R_2463585_SNP [dm3] 2R_6576080_SNP [dm6]	C	A	9.543e^-5	0.82	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	12821561	X_12821561_SNP [dm3] X_12927528_SNP [dm6]	T	C	9.587e^-5	0.82	INTRON fne
3L	12779776	3L_12779776_SNP [dm3] 3L_12786676_SNP [dm6]	C	T	9.623e^-5	0.82	SYNONYMOUS_CODING Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6060803	X_6060803_DEL [dm3] X_6166770_DEL [dm6]	TT	T	9.677e^-5	0.82	INTRON Ca-alpha1T
2L	9405070	2L_9405070_INS [dm3] 2L_9405070_INS [dm6]	A	ACATACA	9.682e^-5	0.82	INTRON Shawl
2R	11039792	2R_11039792_SNP [dm3] 2R_15152287_SNP [dm6]	T	A	9.847e^-5	0.82	INTERGENIC
2R	12408082	2R_12408082_SNP [dm3] 2R_16520577_SNP [dm6]	T	G	9.994e^-5	0.82	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14722937	2L_14722937_SNP [dm3] 2L_14722937_SNP [dm6]	G	C	1.022e^-4	0.82	INTERGENIC
3R	25526883	3R_25526883_SNP [dm3] 3R_29701161_SNP [dm6]	A	T	1.041e^-4	0.82	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	25526886	3R_25526886_SNP [dm3] 3R_29701164_SNP [dm6]	G	T	1.041e^-4	0.82	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	25526896	3R_25526896_SNP [dm3] 3R_29701174_SNP [dm6]	G	T	1.041e^-4	0.82	INTERGENIC	enhancer mE1_CBP_Enhancers
3L	15590997	3L_15590997_SNP [dm3] 3L_15597897_SNP [dm6]	A	T	1.055e^-4	0.82	INTRON RhoGAP71E	TF binding site mE1_TFBS_HSA
2L	9507277	2L_9507277_SNP [dm3] 2L_9507277_SNP [dm6]	G	T	1.060e^-4	0.82	INTRON CG33298
2L	11191010	2L_11191010_SNP [dm3] 2L_11191010_SNP [dm6]	G	C	1.067e^-4	0.82	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1236696	2L_1236696_SNP [dm3] 2L_1236696_SNP [dm6]	C	G	1.067e^-4	0.82	INTERGENIC
2L	15431797	2L_15431797_SNP [dm3] 2L_15431797_SNP [dm6]	C	T	1.067e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7742647	2L_7742647_SNP [dm3] 2L_7742647_SNP [dm6]	A	G	1.067e^-4	0.82	INTERGENIC
2L	7742855	2L_7742855_SNP [dm3] 2L_7742855_SNP [dm6]	T	C	1.067e^-4	0.82	DOWNSTREAM CG7214 INTERGENIC
2R	13597454	2R_13597454_SNP [dm3] 2R_17709949_SNP [dm6]	A	T	1.067e^-4	0.82	UPSTREAM CG6424 INTRON CG6424
2R	17035200	2R_17035200_SNP [dm3] 2R_21147695_SNP [dm6]	C	T	1.067e^-4	0.82	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
2R	18394879	2R_18394879_SNP [dm3] 2R_22507374_SNP [dm6]	C	T	1.067e^-4	0.82	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4083072	3L_4083072_SNP [dm3] 3L_4083072_SNP [dm6]	A	C	1.067e^-4	0.82	INTRON Gad1
3R	16891835	3R_16891835_SNP [dm3] 3R_21066113_SNP [dm6]	C	T	1.067e^-4	0.82	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	4127208	3R_4127208_SNP [dm3] 3R_8301486_SNP [dm6]	A	G	1.067e^-4	0.82	UTR_5_PRIME mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4127242	3R_4127242_SNP [dm3] 3R_8301520_SNP [dm6]	C	A	1.067e^-4	0.82	SYNONYMOUS_CODING mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4156237	3R_4156237_SNP [dm3] 3R_8330515_SNP [dm6]	A	C	1.067e^-4	0.82	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14302776	X_14302776_SNP [dm3] X_14408743_SNP [dm6]	C	T	1.067e^-4	0.82	INTRON dpr8
2R	13993156	2R_13993156_SNP [dm3] 2R_18105651_SNP [dm6]	T	G	1.067e^-4	0.82	INTRON CG5756
2R	9643391	2R_9643391_SNP [dm3] 2R_13755886_SNP [dm6]	A	G	1.126e^-4	0.82	INTRON CG6280
2L	11361515	2L_11361515_SNP [dm3] 2L_11361515_SNP [dm6]	A	G	1.128e^-4	0.82	INTRON salr	regulatory region REDfly_CRMs
2R	16463767	2R_16463767_SNP [dm3] 2R_20576262_SNP [dm6]	T	G	1.139e^-4	0.82	INTRON qsm
2R	16463777	2R_16463777_DEL [dm3] 2R_20576272_DEL [dm6]	CCCCCAATC	C	1.139e^-4	0.82	INTRON qsm
2L	4427843	2L_4427843_SNP [dm3] 2L_4427843_SNP [dm6]	G	A	1.140e^-4	0.82	INTRON CG15431
3R	10604354	3R_10604354_SNP [dm3] 3R_14778632_SNP [dm6]	T	G	1.145e^-4	0.82	INTRON jvl
2R	15274178	2R_15274178_SNP [dm3] 2R_19386673_SNP [dm6]	G	C	1.158e^-4	0.82	NON_SYNONYMOUS_CODING CG10081
3L	2645886	3L_2645886_SNP [dm3] 3L_2645886_SNP [dm6]	C	A	1.172e^-4	0.82	NON_SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22144237	3R_22144237_SNP [dm3] 3R_26318515_SNP [dm6]	T	A	1.201e^-4	0.82	UTR_5_PRIME CG33970
3L	13274309	3L_13274309_SNP [dm3] 3L_13281209_SNP [dm6]	T	G	1.216e^-4	0.82	INTERGENIC
2R	11038945	2R_11038945_SNP [dm3] 2R_15151440_SNP [dm6]	A	G	1.253e^-4	0.82	INTERGENIC
2R	20188889	2R_20188889_SNP [dm3] 2R_24301366_SNP [dm6]	T	G	1.253e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13434509	2L_13434509_SNP [dm3] 2L_13434509_SNP [dm6]	C	T	1.265e^-4	0.82	INTRON CG42784	TF binding site mE1_TFBS_cad
2R	11968893	2R_11968893_SNP [dm3] 2R_16081388_SNP [dm6]	G	A	1.269e^-4	0.82	UTR_3_PRIME Dg DOWNSTREAM Dg
2L	17542237	2L_17542237_SNP [dm3] 2L_17542237_SNP [dm6]	C	A	1.278e^-4	0.82	EXON CR43304
3L	2664117	3L_2664117_SNP [dm3] 3L_2664117_SNP [dm6]	G	A	1.284e^-4	0.82	DOWNSTREAM CG33234 INTRON Fife
2L	4427987	2L_4427987_SNP [dm3] 2L_4427987_SNP [dm6]	A	G	1.288e^-4	0.82	INTRON CG15431
2L	4428074	2L_4428074_SNP [dm3] 2L_4428074_SNP [dm6]	A	C	1.288e^-4	0.82	INTRON CG15431
2L	10036237	2L_10036237_SNP [dm3] 2L_10036237_SNP [dm6]	C	T	1.293e^-4	0.82	INTRON obst-B
2L	4428392	2L_4428392_SNP [dm3] 2L_4428392_SNP [dm6]	G	T	1.298e^-4	0.82	INTRON CG15431
2L	7742428	2L_7742428_SNP [dm3] 2L_7742428_SNP [dm6]	A	T	1.298e^-4	0.82	UPSTREAM Acp1 INTERGENIC
3R	9760120	3R_9760120_SNP [dm3] 3R_13934398_SNP [dm6]	A	C	1.307e^-4	0.82	INTERGENIC
3L	14228494	3L_14228494_SNP [dm3] 3L_14235394_SNP [dm6]	T	C	1.310e^-4	0.82	SYNONYMOUS_CODING CG34244 DOWNSTREAM CG7924	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	1.310e^-4	0.82	UTR_3_PRIME Syt1
3L	19653770	3L_19653770_SNP [dm3] 3L_19660670_SNP [dm6]	G	A	1.318e^-4	0.82	INTRON tey
3R	9151822	3R_9151822_SNP [dm3] 3R_13326100_SNP [dm6]	T	C	1.330e^-4	0.82	INTERGENIC
3L	5021943	3L_5021943_SNP [dm3] 3L_5021943_SNP [dm6]	T	A	1.342e^-4	0.82	INTRON Con	TF binding site mE1_TFBS_chinmo
2R	10886371	2R_10886371_SNP [dm3] 2R_14998866_SNP [dm6]	T	C	1.371e^-4	0.82	INTERGENIC
2L	9030749	2L_9030749_SNP [dm3] 2L_9030749_SNP [dm6]	G	C	1.386e^-4	0.82	INTRON CG9582 & 1 other
X	14301449	X_14301449_SNP [dm3] X_14407416_SNP [dm6]	T	C	1.412e^-4	0.82	INTRON dpr8
3L	22995658	3L_22995658_SNP [dm3] 3L_23002558_SNP [dm6]	A	G	1.419e^-4	0.82	INTRON nrm
X	6804574	X_6804574_DEL [dm3] X_6910541_DEL [dm6]	TT	T	1.429e^-4	0.82	INTRON CG14431
X	13292552	X_13292552_SNP [dm3] X_13398519_SNP [dm6]	T	C	1.444e^-4	0.82	INTRON CG1673
3R	26718585	3R_26718585_SNP [dm3] 3R_30892863_SNP [dm6]	C	G	1.448e^-4	0.82	INTERGENIC
2L	7743361	2L_7743361_SNP [dm3] 2L_7743361_SNP [dm6]	C	T	1.451e^-4	0.82	DOWNSTREAM CG7214 INTERGENIC
3R	13418027	3R_13418027_SNP [dm3] 3R_17592305_SNP [dm6]	C	T	1.451e^-4	0.82	INTERGENIC
3R	27124729	3R_27124729_SNP [dm3] 3R_31299007_SNP [dm6]	A	G	1.471e^-4	0.82	INTERGENIC
3R	27125023	3R_27125023_SNP [dm3] 3R_31299301_SNP [dm6]	G	A	1.471e^-4	0.82	INTERGENIC
X	6286638	X_6286638_SNP [dm3] X_6392605_SNP [dm6]	G	C	1.471e^-4	0.82	INTERGENIC
2L	17250611	2L_17250611_SNP [dm3] 2L_17250611_SNP [dm6]	C	T	1.483e^-4	0.82	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	3678343	2L_3678343_SNP [dm3] 2L_3678343_SNP [dm6]	T	A	1.498e^-4	0.82	INTRON CG34340
2L	5078905	2L_5078905_SNP [dm3] 2L_5078905_SNP [dm6]	A	G	1.509e^-4	0.82	SYNONYMOUS_CODING pgant5
3L	13541893	3L_13541893_INS [dm3] 3L_13548793_INS [dm6]	C	CGGACAC	1.517e^-4	0.82	INTRON bru-3
3R	24217371	3R_24217371_SNP [dm3] 3R_28391649_SNP [dm6]	C	A	1.518e^-4	0.82	INTERGENIC
X	20318721	X_20318721_SNP [dm3] X_20447694_SNP [dm6]	A	G	1.536e^-4	0.82	DOWNSTREAM CG42578 INTERGENIC
2L	11971745	2L_11971745_SNP [dm3] 2L_11971745_SNP [dm6]	C	T	1.541e^-4	0.82	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11971906	2L_11971906_SNP [dm3] 2L_11971906_SNP [dm6]	A	T	1.541e^-4	0.82	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	1051015	2L_1051015_SNP [dm3] 2L_1051015_SNP [dm6]	T	A	1.544e^-4	0.82	UTR_3_PRIME S DOWNSTREAM S
2L	1121021	2L_1121021_SNP [dm3] 2L_1121021_SNP [dm6]	T	G	1.547e^-4	0.82	INTRON Pino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26838751	3R_26838751_SNP [dm3] 3R_31013029_SNP [dm6]	C	A	1.548e^-4	0.82	INTRON 5-HT7	TF binding site mE1_TFBS_inv
3L	14642130	3L_14642130_INS [dm3] 3L_14649030_INS [dm6]	T	TTGT	1.563e^-4	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	862947	2L_862947_SNP [dm3] 2L_862947_SNP [dm6]	T	G	1.574e^-4	0.82	SYNONYMOUS_CODING aru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22134063	X_22134063_SNP [dm3] X_22732227_SNP [dm6]	C	T	1.577e^-4	0.82	INTRON CR44997	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9507221	2L_9507221_SNP [dm3] 2L_9507221_SNP [dm6]	G	C	1.582e^-4	0.82	INTRON CG33298
3R	23832184	3R_23832184_SNP [dm3] 3R_28006462_SNP [dm6]	C	T	1.591e^-4	0.82	INTERGENIC
3R	9151848	3R_9151848_SNP [dm3] 3R_13326126_SNP [dm6]	A	G	1.602e^-4	0.82	INTERGENIC
2R	8622612	2R_8622612_SNP [dm3] 2R_12735107_SNP [dm6]	C	T	1.627e^-4	0.82	SYNONYMOUS_CODING CG42663
X	17673225	X_17673225_SNP [dm3] X_17779192_SNP [dm6]	C	T	1.638e^-4	0.82	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	4519489	X_4519489_SNP [dm3] X_4625456_SNP [dm6]	C	T	1.645e^-4	0.82	SYNONYMOUS_CODING peb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	17673209	X_17673209_INS [dm3] X_17779176_INS [dm6]	T	TCGCCATAGAACT...	1.647e^-4	0.82	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673211	X_17673211_SNP [dm3] X_17779178_SNP [dm6]	T	G	1.647e^-4	0.82	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673222	X_17673222_SNP [dm3] X_17779189_SNP [dm6]	A	G	1.647e^-4	0.82	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673229	X_17673229_SNP [dm3] X_17779196_SNP [dm6]	C	T	1.647e^-4	0.82	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673231	X_17673231_SNP [dm3] X_17779198_SNP [dm6]	T	C	1.647e^-4	0.82	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673233	X_17673233_SNP [dm3] X_17779200_SNP [dm6]	A	G	1.647e^-4	0.82	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	9591724	3R_9591724_SNP [dm3] 3R_13766002_SNP [dm6]	T	A	1.647e^-4	0.82	NON_SYNONYMOUS_CODING CG9312
2L	1113989	2L_1113989_SNP [dm3] 2L_1113989_SNP [dm6]	G	T	1.675e^-4	0.82	UTR_3_PRIME CG14340 DOWNSTREAM Pino
3L	13165040	3L_13165040_SNP [dm3] 3L_13171940_SNP [dm6]	C	T	1.677e^-4	0.82	INTERGENIC
3R	9747358	3R_9747358_DEL [dm3] 3R_13921636_DEL [dm6]	TCCCCAT	T	1.681e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_sens
2R	9644119	2R_9644119_SNP [dm3] 2R_13756614_SNP [dm6]	T	A	1.688e^-4	0.82	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12583221	2R_12583221_SNP [dm3] 2R_16695716_SNP [dm6]	C	T	1.694e^-4	0.82	INTRON CG30463
3R	12211228	3R_12211228_SNP [dm3] 3R_16385506_SNP [dm6]	A	G	1.694e^-4	0.82	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	13503985	2R_13503985_SNP [dm3] 2R_17616480_SNP [dm6]	A	G	1.707e^-4	0.82	UPSTREAM snoRNA:Or-aca4 DOWNSTREAM CG44403 INTRON CG10936	TF binding site BDTNP1_TFBS_dl
3L	15611717	3L_15611717_SNP [dm3] 3L_15618617_SNP [dm6]	A	G	1.741e^-4	0.82	INTRON comm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3L	15611725	3L_15611725_SNP [dm3] 3L_15618625_SNP [dm6]	C	A	1.741e^-4	0.82	INTRON comm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
X	11139011	X_11139011_SNP [dm3] X_11244978_SNP [dm6]	C	G	1.748e^-4	0.82	INTRON CG44422
3R	16304635	3R_16304635_SNP [dm3] 3R_20478913_SNP [dm6]	A	G	1.760e^-4	0.82	INTRON Gfrl	TF binding site BDTNP1_TFBS_twi
2R	19529370	2R_19529370_SNP [dm3] 2R_23641847_SNP [dm6]	T	A	1.761e^-4	0.82	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2663896	3L_2663896_SNP [dm3] 3L_2663896_SNP [dm6]	T	C	1.765e^-4	0.82	DOWNSTREAM CG33234 INTRON Fife
X	9790622	X_9790622_SNP [dm3] X_9896589_SNP [dm6]	G	A	1.768e^-4	0.82	INTRON CG15249
2L	16222318	2L_16222318_SNP [dm3] 2L_16222318_SNP [dm6]	A	G	1.777e^-4	0.82	INTERGENIC
2L	3050608	2L_3050608_SNP [dm3] 2L_3050608_SNP [dm6]	A	G	1.797e^-4	0.82	NON_SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3050837	2L_3050837_SNP [dm3] 2L_3050837_SNP [dm6]	G	C	1.797e^-4	0.82	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	3473334	2L_3473334_SNP [dm3] 2L_3473334_SNP [dm6]	A	T	1.810e^-4	0.82	DOWNSTREAM CG31776 INTRON pgant4	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	9760102	3R_9760102_SNP [dm3] 3R_13934380_SNP [dm6]	C	G	1.826e^-4	0.82	INTERGENIC
2R	13503977	2R_13503977_SNP [dm3] 2R_17616472_SNP [dm6]	C	T	1.828e^-4	0.82	UPSTREAM snoRNA:Or-aca4 DOWNSTREAM CG44403 INTRON CG10936	TF binding site BDTNP1_TFBS_dl
3R	11618443	3R_11618443_SNP [dm3] 3R_15792721_SNP [dm6]	A	G	1.849e^-4	0.82	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
X	18249664	X_18249664_INS [dm3] X_18355631_INS [dm6]	G	GTAGGCGG	1.862e^-4	0.82	INTRON CG6123
3R	13730433	3R_13730433_SNP [dm3] 3R_17904711_SNP [dm6]	G	A	1.870e^-4	0.82	INTRON Rim
3L	4739624	3L_4739624_SNP [dm3] 3L_4739624_SNP [dm6]	G	C	1.875e^-4	0.82	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	1.878e^-4	0.82	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25524460	3R_25524460_SNP [dm3] 3R_29698738_SNP [dm6]	C	G	1.909e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4316624	2L_4316624_SNP [dm3] 2L_4316624_SNP [dm6]	G	A	1.910e^-4	0.82	DOWNSTREAM tutl INTRON tutl
3R	16099065	3R_16099065_SNP [dm3] 3R_20273343_SNP [dm6]	C	T	1.912e^-4	0.82	INTRON cic
2L	6065490	2L_6065490_SNP [dm3] 2L_6065490_SNP [dm6]	G	C	1.915e^-4	0.82	SYNONYMOUS_CODING Fbw5 UPSTREAM CG9147	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18170401	X_18170401_SNP [dm3] X_18276368_SNP [dm6]	A	G	1.930e^-4	0.82	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12821487	X_12821487_SNP [dm3] X_12927454_SNP [dm6]	G	A	1.952e^-4	0.82	INTRON fne
2R	6954908	2R_6954908_SNP [dm3] 2R_11067403_SNP [dm6]	T	C	1.983e^-4	0.82	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	13584318	3L_13584318_DEL [dm3] 3L_13591218_DEL [dm6]	CGCT	G	1.989e^-4	0.82	INTRON bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1106365	2L_1106365_SNP [dm3] 2L_1106365_SNP [dm6]	G	A	2.004e^-4	0.82	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13641881	3R_13641881_SNP [dm3] 3R_17816159_SNP [dm6]	G	A	2.016e^-4	0.82	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9752024	3R_9752024_SNP [dm3] 3R_13926302_SNP [dm6]	C	T	2.044e^-4	0.82	INTERGENIC
2L	10030120	2L_10030120_SNP [dm3] 2L_10030120_SNP [dm6]	T	C	2.051e^-4	0.82	DOWNSTREAM CG13127 INTERGENIC
2R	7339258	2R_7339258_DEL [dm3] 2R_11451753_DEL [dm6]	AC	A	2.052e^-4	0.82	UPSTREAM E_Pc_ DOWNSTREAM qvr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	11874867	2R_11874867_SNP [dm3] 2R_15987362_SNP [dm6]	T	G	2.081e^-4	0.82	UPSTREAM CR45021 & 1 other INTRON Strn-Mlck
X	6593783	X_6593783_SNP [dm3] X_6699750_SNP [dm6]	T	A	2.081e^-4	0.82	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6593967	X_6593967_SNP [dm3] X_6699934_SNP [dm6]	G	A	2.081e^-4	0.82	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11618479	3R_11618479_SNP [dm3] 3R_15792757_SNP [dm6]	G	C	2.098e^-4	0.82	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
X	5568149	X_5568149_SNP [dm3] X_5674116_SNP [dm6]	G	A	2.099e^-4	0.82	SYNONYMOUS_CODING Tre1 DOWNSTREAM RpL35	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10753216	2L_10753216_SNP [dm3] 2L_10753216_SNP [dm6]	A	C	2.105e^-4	0.82	INTRON CG17124
3L	15586228	3L_15586228_SNP [dm3] 3L_15593128_SNP [dm6]	C	T	2.113e^-4	0.82	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2663711	2L_2663711_SNP [dm3] 2L_2663711_SNP [dm6]	T	A	2.121e^-4	0.82	INTERGENIC
2L	16295988	2L_16295988_SNP [dm3] 2L_16295988_SNP [dm6]	A	C	2.131e^-4	0.82	UTR_3_PRIME Cyp303a1 DOWNSTREAM heix
X	12821480	X_12821480_SNP [dm3] X_12927447_SNP [dm6]	T	C	2.132e^-4	0.82	INTRON fne
3R	4719116	3R_4719116_SNP [dm3] 3R_8893394_SNP [dm6]	C	A	2.165e^-4	0.82	INTRON pyd
3L	14642827	3L_14642827_SNP [dm3] 3L_14649727_SNP [dm6]	G	T	2.169e^-4	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17559641	3R_17559641_SNP [dm3] 3R_21733919_SNP [dm6]	C	T	2.170e^-4	0.82	INTERGENIC
3R	17559683	3R_17559683_SNP [dm3] 3R_21733961_SNP [dm6]	A	T	2.170e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9088633	3L_9088633_SNP [dm3] 3L_9095533_SNP [dm6]	A	T	2.173e^-4	0.82	DOWNSTREAM CG32032 INTERGENIC
2R	10686218	2R_10686218_SNP [dm3] 2R_14798713_SNP [dm6]	G	T	2.189e^-4	0.82	UTR_5_PRIME kn INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11766514	2R_11766514_SNP [dm3] 2R_15879009_SNP [dm6]	G	A	2.189e^-4	0.82	INTRON sli
2R	12787382	2R_12787382_SNP [dm3] 2R_16899877_SNP [dm6]	T	C	2.189e^-4	0.82	SYNONYMOUS_CODING inaC
2R	15327382	2R_15327382_SNP [dm3] 2R_19439877_SNP [dm6]	G	A	2.189e^-4	0.82	SPLICE_SITE_REGION Spt5 INTRON Spt5	TF binding site mE1_TFBS_sens
2R	15327451	2R_15327451_SNP [dm3] 2R_19439946_SNP [dm6]	G	T	2.189e^-4	0.82	SYNONYMOUS_CODING Spt5
2R	19120090	2R_19120090_SNP [dm3] 2R_23232567_SNP [dm6]	T	A	2.189e^-4	0.82	UPSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cad
2R	19120118	2R_19120118_SNP [dm3] 2R_23232595_SNP [dm6]	T	C	2.189e^-4	0.82	UPSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cad
2R	19123694	2R_19123694_SNP [dm3] 2R_23236171_SNP [dm6]	T	A	2.189e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7909074	3L_7909074_SNP [dm3] 3L_7915974_SNP [dm6]	C	A	2.189e^-4	0.82	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	12928384	3R_12928384_SNP [dm3] 3R_17102662_SNP [dm6]	C	G	2.189e^-4	0.82	INTRON cher
3R	13855042	3R_13855042_SNP [dm3] 3R_18029320_SNP [dm6]	A	T	2.189e^-4	0.82	INTERGENIC
3R	13855047	3R_13855047_SNP [dm3] 3R_18029325_SNP [dm6]	G	A	2.189e^-4	0.82	INTERGENIC
3R	25016530	3R_25016530_SNP [dm3] 3R_29190808_SNP [dm6]	G	A	2.189e^-4	0.82	INTRON CG14509
3R	26487577	3R_26487577_SNP [dm3] 3R_30661855_SNP [dm6]	T	G	2.197e^-4	0.82	INTERGENIC
3R	26735097	3R_26735097_SNP [dm3] 3R_30909375_SNP [dm6]	T	C	2.202e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22888119	3L_22888119_SNP [dm3] 3L_22895019_SNP [dm6]	T	C	2.203e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	5010373	X_5010373_SNP [dm3] X_5116340_SNP [dm6]	G	A	2.229e^-4	0.82	INTRON rg & 1 other
3L	8197120	3L_8197120_SNP [dm3] 3L_8204020_SNP [dm6]	T	C	2.267e^-4	0.82	DOWNSTREAM CG13679 INTERGENIC
3R	13730113	3R_13730113_SNP [dm3] 3R_17904391_SNP [dm6]	T	C	2.284e^-4	0.82	INTRON Rim
2R	9849715	2R_9849715_INS [dm3] 2R_13962210_INS [dm6]	T	TGAT	2.298e^-4	0.82	INTRON Cp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7307321	3R_7307321_SNP [dm3] 3R_11481599_SNP [dm6]	G	C	2.304e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13464279	2L_13464279_SNP [dm3] 2L_13464279_SNP [dm6]	A	T	2.313e^-4	0.82	INTRON CG42784
3L	15584864	3L_15584864_SNP [dm3] 3L_15591764_SNP [dm6]	T	C	2.321e^-4	0.82	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	16739456	3R_16739456_SNP [dm3] 3R_20913734_SNP [dm6]	C	T	2.347e^-4	0.82	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16563214	3R_16563214_SNP [dm3] 3R_20737492_SNP [dm6]	C	A	2.371e^-4	0.82	NON_SYNONYMOUS_CODING CG17267 UTR_3_PRIME cdc2c DOWNSTREAM cdc2c
3L	17976841	3L_17976841_DEL [dm3] 3L_17983741_DEL [dm6]	CTATCACTC	C	2.373e^-4	0.82	INTRON Eip75B
3R	9821791	3R_9821791_SNP [dm3] 3R_13996069_SNP [dm6]	C	G	2.381e^-4	0.82	INTRON rdx
3L	7908473	3L_7908473_SNP [dm3] 3L_7915373_SNP [dm6]	G	A	2.386e^-4	0.82	UPSTREAM CG32368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	20316145	X_20316145_SNP [dm3] X_20445118_SNP [dm6]	G	T	2.435e^-4	0.82	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6174439	2R_6174439_SNP [dm3] 2R_10286934_SNP [dm6]	A	T	2.483e^-4	0.82	UPSTREAM CAP INTRON CAP
2R	6174446	2R_6174446_SNP [dm3] 2R_10286941_SNP [dm6]	C	A	2.483e^-4	0.82	UPSTREAM CAP INTRON CAP
2R	6174454	2R_6174454_SNP [dm3] 2R_10286949_SNP [dm6]	A	G	2.483e^-4	0.82	UPSTREAM CAP INTRON CAP
2R	6656084	2R_6656084_SNP [dm3] 2R_10768579_SNP [dm6]	C	T	2.506e^-4	0.82	INTRON CG33144
2L	1112479	2L_1112479_SNP [dm3] 2L_1112479_SNP [dm6]	T	C	2.548e^-4	0.82	UPSTREAM CG14340 INTRON CG14339
X	2730005	X_2730005_SNP [dm3] X_2835972_SNP [dm6]	T	C	2.552e^-4	0.82	INTRON kirre
3R	9760109	3R_9760109_SNP [dm3] 3R_13934387_SNP [dm6]	C	T	2.560e^-4	0.82	INTERGENIC
2L	13464300	2L_13464300_SNP [dm3] 2L_13464300_SNP [dm6]	A	T	2.599e^-4	0.82	INTRON CG42784
2L	4521032	2L_4521032_SNP [dm3] 2L_4521032_SNP [dm6]	A	G	2.603e^-4	0.82	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27115976	3R_27115976_SNP [dm3] 3R_31290254_SNP [dm6]	G	T	2.609e^-4	0.82	INTERGENIC
3R	27117606	3R_27117606_SNP [dm3] 3R_31291884_SNP [dm6]	C	T	2.609e^-4	0.82	INTERGENIC
2R	9796970	2R_9796970_SNP [dm3] 2R_13909465_SNP [dm6]	A	C	2.636e^-4	0.82	INTRON shot
3R	17978331	3R_17978331_SNP [dm3] 3R_22152609_SNP [dm6]	C	A	2.649e^-4	0.82	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	27081920	3R_27081920_SNP [dm3] 3R_31256198_SNP [dm6]	A	C	2.656e^-4	0.82	SYNONYMOUS_CODING spn-F	TF binding site mE1_TFBS_cad
3L	4740113	3L_4740113_SNP [dm3] 3L_4740113_SNP [dm6]	G	T	2.656e^-4	0.82	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14302410	X_14302410_SNP [dm3] X_14408377_SNP [dm6]	A	T	2.656e^-4	0.82	INTRON dpr8
X	12821446	X_12821446_SNP [dm3] X_12927413_SNP [dm6]	A	G	2.657e^-4	0.82	INTRON fne	TF binding site BDTNP1_TFBS_dl
X	12821464	X_12821464_SNP [dm3] X_12927431_SNP [dm6]	A	G	2.657e^-4	0.82	INTRON fne
2L	14371395	2L_14371395_SNP [dm3] 2L_14371395_SNP [dm6]	C	A	2.720e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_sens
2L	7911802	2L_7911802_SNP [dm3] 2L_7911802_SNP [dm6]	A	C	2.755e^-4	0.82	INTRON Snoo
2R	10687961	2R_10687961_DEL [dm3] 2R_14800456_DEL [dm6]	GG	G	2.770e^-4	0.82	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	13983795	2L_13983795_SNP [dm3] 2L_13983795_SNP [dm6]	T	G	2.788e^-4	0.82	SPLICE_SITE_REGION rk DOWNSTREAM NimC2 INTRON rk	TF binding site mE1_TFBS_chinmo
X	17673226	X_17673226_SNP [dm3] X_17779193_SNP [dm6]	A	C	2.816e^-4	0.82	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	22905022	3L_22905022_SNP [dm3] 3L_22911922_SNP [dm6]	G	C	2.826e^-4	0.82	UTR_5_PRIME CG12768	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22914517	3L_22914517_SNP [dm3] 3L_22921417_SNP [dm6]	C	A	2.826e^-4	0.82	INTRON CG12768	TF binding site mE1_TFBS_HSA
3L	22929939	3L_22929939_SNP [dm3] 3L_22936839_SNP [dm6]	C	T	2.826e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	962555	3L_962555_SNP [dm3] 3L_962555_SNP [dm6]	C	T	2.848e^-4	0.82	INTRON Glut1
X	15298139	X_15298139_SNP [dm3] X_15404106_SNP [dm6]	A	G	2.848e^-4	0.82	INTRON Cngl
X	15298144	X_15298144_SNP [dm3] X_15404111_SNP [dm6]	G	A	2.848e^-4	0.82	INTRON Cngl
X	20318455	X_20318455_INS [dm3] X_20447428_INS [dm6]	C	CGGTGCAACGGGCATGGTC...	2.856e^-4	0.82	DOWNSTREAM CG42578 INTERGENIC
X	20318466	X_20318466_SNP [dm3] X_20447439_SNP [dm6]	A	G	2.856e^-4	0.82	DOWNSTREAM CG42578 INTERGENIC
X	20318467	X_20318467_SNP [dm3] X_20447440_SNP [dm6]	G	T	2.856e^-4	0.82	DOWNSTREAM CG42578 INTERGENIC
X	3381721	X_3381721_SNP [dm3] X_3487688_SNP [dm6]	G	C	2.858e^-4	0.82	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3R	25979319	3R_25979319_SNP [dm3] 3R_30153597_SNP [dm6]	G	A	2.865e^-4	0.82	SYNONYMOUS_CODING CG11498 DOWNSTREAM CG15529	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	12090102	2R_12090102_SNP [dm3] 2R_16202597_SNP [dm6]	C	T	2.866e^-4	0.82	SYNONYMOUS_CODING shark DOWNSTREAM mrj	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	14676335	3R_14676335_SNP [dm3] 3R_18850613_SNP [dm6]	G	T	2.866e^-4	0.82	DOWNSTREAM CR45633 & 1 other INTERGENIC
3R	14676337	3R_14676337_SNP [dm3] 3R_18850615_SNP [dm6]	C	A	2.866e^-4	0.82	DOWNSTREAM CR45633 & 1 other INTERGENIC
2L	11675308	2L_11675308_SNP [dm3] 2L_11675308_SNP [dm6]	C	A	2.916e^-4	0.82	INTERGENIC
3R	7762999	3R_7762999_SNP [dm3] 3R_11937277_SNP [dm6]	C	A	2.924e^-4	0.82	INTRON Cad87A
2R	12114111	2R_12114111_SNP [dm3] 2R_16226606_SNP [dm6]	G	A	2.925e^-4	0.82	UTR_5_PRIME Tsf3 & 1 other UPSTREAM CG15706 INTRON CG15706
X	17530812	X_17530812_SNP [dm3] X_17636779_SNP [dm6]	C	A	2.971e^-4	0.82	UPSTREAM CG8289 INTRON CG5800	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	20870971	X_20870971_SNP [dm3] X_20999944_SNP [dm6]	T	C	2.980e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17279522	2R_17279522_SNP [dm3] 2R_21392017_SNP [dm6]	A	T	2.993e^-4	0.82	DOWNSTREAM Sdc INTRON Acox57D-d
3L	14911328	3L_14911328_SNP [dm3] 3L_14918228_SNP [dm6]	T	G	2.994e^-4	0.82	INTRON DCX-EMAP
2R	15327318	2R_15327318_SNP [dm3] 2R_19439813_SNP [dm6]	T	C	2.999e^-4	0.82	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7856728	3L_7856728_SNP [dm3] 3L_7863628_SNP [dm6]	C	T	2.999e^-4	0.82	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	3658246	X_3658246_SNP [dm3] X_3764213_SNP [dm6]	A	G	3.009e^-4	0.82	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12766285	2R_12766285_SNP [dm3] 2R_16878780_SNP [dm6]	T	A	3.016e^-4	0.82	INTRON CG8910
3L	14642099	3L_14642099_SNP [dm3] 3L_14648999_SNP [dm6]	T	C	3.019e^-4	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	9386074	X_9386074_SNP [dm3] X_9492041_SNP [dm6]	C	T	3.021e^-4	0.82	INTRON mgl
3R	9867295	3R_9867295_SNP [dm3] 3R_14041573_SNP [dm6]	T	C	3.038e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15566523	2R_15566523_SNP [dm3] 2R_19679018_SNP [dm6]	G	T	3.047e^-4	0.82	INTERGENIC
3L	23139015	3L_23139015_SNP [dm3] 3L_23145915_SNP [dm6]	A	G	3.051e^-4	0.82	INTERGENIC
2R	6005158	2R_6005158_SNP [dm3] 2R_10117653_SNP [dm6]	G	T	3.127e^-4	0.82	UPSTREAM dmpd DOWNSTREAM Pfk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8164454	3L_8164454_SNP [dm3] 3L_8171354_SNP [dm6]	A	G	3.134e^-4	0.82	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi
X	14382716	X_14382716_SNP [dm3] X_14488683_SNP [dm6]	T	C	3.136e^-4	0.82	INTERGENIC
2R	17718258	2R_17718258_SNP [dm3] 2R_21830753_SNP [dm6]	G	C	3.137e^-4	0.82	INTRON CG13492
2R	6810847	2R_6810847_SNP [dm3] 2R_10923342_SNP [dm6]	G	A	3.150e^-4	0.82	INTERGENIC
3L	761565	3L_761565_SNP [dm3] 3L_761565_SNP [dm6]	G	T	3.163e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	14055274	3L_14055274_SNP [dm3] 3L_14062174_SNP [dm6]	G	C	3.165e^-4	0.82	INTRON CG32138
2R	17102265	2R_17102265_INS [dm3] 2R_21214760_INS [dm6]	A	ACTGTGA	3.168e^-4	0.82	DOWNSTREAM CG15661 INTRON CG4302
3L	14911343	3L_14911343_SNP [dm3] 3L_14918243_SNP [dm6]	A	C	3.169e^-4	0.82	INTRON DCX-EMAP
2R	10431042	2R_10431042_DEL [dm3] 2R_14543537_DEL [dm6]	TT	T	3.181e^-4	0.82	DOWNSTREAM CG30076 INTRON ttv
2R	15006732	2R_15006732_SNP [dm3] 2R_19119227_SNP [dm6]	A	T	3.182e^-4	0.82	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
2L	16496859	2L_16496859_SNP [dm3] 2L_16496859_SNP [dm6]	T	A	3.187e^-4	0.82	UTR_5_PRIME Tpr2 INTRON Tpr2
X	20405927	X_20405927_SNP [dm3] X_20534900_SNP [dm6]	G	T	3.208e^-4	0.82	INTERGENIC
3L	14057920	3L_14057920_SNP [dm3] 3L_14064820_SNP [dm6]	C	G	3.211e^-4	0.82	INTRON CG32138
3L	14057926	3L_14057926_SNP [dm3] 3L_14064826_SNP [dm6]	T	G	3.211e^-4	0.82	INTRON CG32138
3L	14057938	3L_14057938_SNP [dm3] 3L_14064838_SNP [dm6]	G	C	3.211e^-4	0.82	INTRON CG32138
3L	14057944	3L_14057944_SNP [dm3] 3L_14064844_SNP [dm6]	C	A	3.211e^-4	0.82	INTRON CG32138
3L	16448032	3L_16448032_SNP [dm3] 3L_16454932_SNP [dm6]	C	G	3.211e^-4	0.82	INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2479146	2R_2479146_SNP [dm3] 2R_6591641_SNP [dm6]	A	T	3.228e^-4	0.82	INTRON jing	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3658310	X_3658310_SNP [dm3] X_3764277_SNP [dm6]	C	G	3.236e^-4	0.82	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14347006	2L_14347006_SNP [dm3] 2L_14347006_SNP [dm6]	A	T	3.251e^-4	0.82	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
X	15428433	X_15428433_SNP [dm3] X_15534400_SNP [dm6]	T	C	3.251e^-4	0.82	INTRON Ac13E
2L	20241397	2L_20241397_SNP [dm3] 2L_20241397_SNP [dm6]	T	A	3.258e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13460412	X_13460412_SNP [dm3] X_13566379_SNP [dm6]	T	C	3.261e^-4	0.82	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
3L	13313957	3L_13313957_SNP [dm3] 3L_13320857_SNP [dm6]	T	C	3.277e^-4	0.82	INTERGENIC
2L	1068382	2L_1068382_SNP [dm3] 2L_1068382_SNP [dm6]	G	A	3.280e^-4	0.82	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2998162	3L_2998162_SNP [dm3] 3L_2998162_SNP [dm6]	A	T	3.298e^-4	0.82	INTERGENIC
2R	5318902	2R_5318902_INS [dm3] 2R_9431397_INS [dm6]	A	ATACA	3.305e^-4	0.82	INTRON Pdk
3R	20989278	3R_20989278_SNP [dm3] 3R_25163556_SNP [dm6]	T	C	3.310e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18159493	3L_18159493_SNP [dm3] 3L_18166393_SNP [dm6]	A	T	3.316e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5884286	2L_5884286_SNP [dm3] 2L_5884286_SNP [dm6]	C	T	3.326e^-4	0.82	SYNONYMOUS_CODING CG44574 UPSTREAM CG43185 DOWNSTREAM Sfp26Ac
3R	12975287	3R_12975287_SNP [dm3] 3R_17149565_SNP [dm6]	G	A	3.334e^-4	0.82	UPSTREAM Det & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12975331	3R_12975331_SNP [dm3] 3R_17149609_SNP [dm6]	A	T	3.334e^-4	0.82	UPSTREAM Det & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18385273	3R_18385273_SNP [dm3] 3R_22559551_SNP [dm6]	A	C	3.344e^-4	0.82	INTRON CG5278
3L	14642829	3L_14642829_DEL [dm3] 3L_14649729_DEL [dm6]	GA	G	3.362e^-4	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	11081217	2R_11081217_SNP [dm3] 2R_15193712_SNP [dm6]	C	T	3.406e^-4	0.82	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	960837	3L_960837_SNP [dm3] 3L_960837_SNP [dm6]	T	C	3.409e^-4	0.82	INTRON Glut1
X	14387839	X_14387839_SNP [dm3] X_14493806_SNP [dm6]	C	A	3.422e^-4	0.82	INTERGENIC
2L	5760144	2L_5760144_SNP [dm3] 2L_5760144_SNP [dm6]	C	A	3.429e^-4	0.82	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
2L	7101775	2L_7101775_SNP [dm3] 2L_7101775_SNP [dm6]	C	T	3.445e^-4	0.82	INTRON Pvf3
3L	7899961	3L_7899961_SNP [dm3] 3L_7906861_SNP [dm6]	C	T	3.453e^-4	0.82	INTRON pbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26736802	3R_26736802_SNP [dm3] 3R_30911080_SNP [dm6]	G	A	3.458e^-4	0.82	INTERGENIC
2R	12583235	2R_12583235_SNP [dm3] 2R_16695730_SNP [dm6]	C	A	3.463e^-4	0.82	INTRON CG30463
X	20530232	X_20530232_SNP [dm3] X_20659205_SNP [dm6]	A	G	3.463e^-4	0.82	INTRON Cyp6v1
2R	14230156	2R_14230156_SNP [dm3] 2R_18342651_SNP [dm6]	T	G	3.470e^-4	0.82	INTRON sbb
2L	4430404	2L_4430404_SNP [dm3] 2L_4430404_SNP [dm6]	G	A	3.511e^-4	0.82	INTRON CG15431
X	17667553	X_17667553_SNP [dm3] X_17773520_SNP [dm6]	A	G	3.511e^-4	0.82	INTRON unc-4
3L	15643704	3L_15643704_SNP [dm3] 3L_15650604_SNP [dm6]	A	T	3.519e^-4	0.82	UPSTREAM Eig71Ea & 1 other DOWNSTREAM Eig71Ec & 1 other INTERGENIC
3R	9151836	3R_9151836_SNP [dm3] 3R_13326114_SNP [dm6]	A	G	3.523e^-4	0.82	INTERGENIC
3R	10604335	3R_10604335_SNP [dm3] 3R_14778613_SNP [dm6]	G	A	3.550e^-4	0.82	INTRON jvl
X	18446683	X_18446683_SNP [dm3] X_18552650_SNP [dm6]	T	G	3.552e^-4	0.82	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26802785	3R_26802785_SNP [dm3] 3R_30977063_SNP [dm6]	G	T	3.564e^-4	0.82	INTRON 5-HT7
3L	18488295	3L_18488295_INS [dm3] 3L_18495195_INS [dm6]	A	AA	3.593e^-4	0.82	INTRON AstC-R2
3L	18488298	3L_18488298_SNP [dm3] 3L_18495198_SNP [dm6]	A	T	3.593e^-4	0.82	INTRON AstC-R2
2L	2764097	2L_2764097_SNP [dm3] 2L_2764097_SNP [dm6]	T	C	3.593e^-4	0.82	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
3R	26013931	3R_26013931_SNP [dm3] 3R_30188209_SNP [dm6]	T	C	3.607e^-4	0.82	INTRON CG9747
3R	26013943	3R_26013943_SNP [dm3] 3R_30188221_SNP [dm6]	C	T	3.607e^-4	0.82	INTRON CG9747
2R	11439258	2R_11439258_DEL [dm3] 2R_15551753_DEL [dm6]	TAAATT	T	3.621e^-4	0.82	INTERGENIC
2L	19935812	2L_19935812_SNP [dm3] 2L_19935812_SNP [dm6]	T	C	3.626e^-4	0.82	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	954781	3L_954781_SNP [dm3] 3L_954781_SNP [dm6]	C	A	3.651e^-4	0.82	INTRON Glut1
3L	23060477	3L_23060477_SNP [dm3] 3L_23067377_SNP [dm6]	C	A	3.652e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	9376198	3R_9376198_SNP [dm3] 3R_13550476_SNP [dm6]	C	T	3.661e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	3381478	X_3381478_SNP [dm3] X_3487445_SNP [dm6]	C	T	3.662e^-4	0.82	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site mE1_TFBS_sens
3R	24477152	3R_24477152_SNP [dm3] 3R_28651430_SNP [dm6]	G	A	3.665e^-4	0.82	UPSTREAM CG31050 INTERGENIC
3R	24477187	3R_24477187_SNP [dm3] 3R_28651465_SNP [dm6]	A	T	3.665e^-4	0.82	UPSTREAM CG31050 INTERGENIC
3R	24477204	3R_24477204_SNP [dm3] 3R_28651482_SNP [dm6]	T	A	3.665e^-4	0.82	INTERGENIC
3R	24477211	3R_24477211_SNP [dm3] 3R_28651489_SNP [dm6]	T	A	3.665e^-4	0.82	INTERGENIC
3R	24477212	3R_24477212_SNP [dm3] 3R_28651490_SNP [dm6]	C	T	3.665e^-4	0.82	INTERGENIC
2L	13464187	2L_13464187_SNP [dm3] 2L_13464187_SNP [dm6]	A	T	3.675e^-4	0.82	INTRON CG42784
2L	13464246	2L_13464246_SNP [dm3] 2L_13464246_SNP [dm6]	A	T	3.675e^-4	0.82	INTRON CG42784
2L	16317119	2L_16317119_SNP [dm3] 2L_16317119_SNP [dm6]	T	C	3.677e^-4	0.82	INTRON cact
2R	11038832	2R_11038832_SNP [dm3] 2R_15151327_SNP [dm6]	A	G	3.689e^-4	0.82	INTERGENIC
3R	12597664	3R_12597664_SNP [dm3] 3R_16771942_SNP [dm6]	G	C	3.690e^-4	0.82	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6174459	2R_6174459_SNP [dm3] 2R_10286954_SNP [dm6]	A	C	3.706e^-4	0.82	UPSTREAM CAP INTRON CAP
3L	15642813	3L_15642813_SNP [dm3] 3L_15649713_SNP [dm6]	T	C	3.710e^-4	0.82	UPSTREAM Eig71Eb & 1 other DOWNSTREAM CG43083 INTERGENIC
2R	14089936	2R_14089936_DEL [dm3] 2R_18202431_DEL [dm6]	AGGTCA	A	3.714e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14090594	2R_14090594_SNP [dm3] 2R_18203089_SNP [dm6]	G	C	3.714e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11306297	2R_11306297_SNP [dm3] 2R_15418792_SNP [dm6]	C	G	3.732e^-4	0.82	INTRON CG43729
3L	2006010	3L_2006010_SNP [dm3] 3L_2006010_SNP [dm6]	C	T	3.833e^-4	0.82	UPSTREAM CG42841 INTERGENIC
2L	9986084	2L_9986084_SNP [dm3] 2L_9986084_SNP [dm6]	G	A	3.846e^-4	0.82	INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	9201815	3R_9201815_SNP [dm3] 3R_13376093_SNP [dm6]	T	G	3.846e^-4	0.82	UPSTREAM CR44138 INTRON CG9813	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9644214	2R_9644214_SNP [dm3] 2R_13756709_SNP [dm6]	G	A	3.849e^-4	0.82	NON_SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16927691	2R_16927691_SNP [dm3] 2R_21040186_SNP [dm6]	T	C	3.862e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16927712	2R_16927712_SNP [dm3] 2R_21040207_SNP [dm6]	A	T	3.862e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25833677	3R_25833677_SNP [dm3] 3R_30007955_SNP [dm6]	T	G	3.865e^-4	0.82	SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18488211	3L_18488211_SNP [dm3] 3L_18495111_SNP [dm6]	C	A	3.865e^-4	0.82	INTRON AstC-R2
X	10024580	X_10024580_SNP [dm3] X_10130547_SNP [dm6]	A	C	3.897e^-4	0.82	INTRON CR44894 & 1 other
2L	13464164	2L_13464164_SNP [dm3] 2L_13464164_SNP [dm6]	G	A	3.905e^-4	0.82	INTRON CG42784
2L	13464191	2L_13464191_DEL [dm3] 2L_13464191_DEL [dm6]	TAATGTAGTTTAGAAAAT...	T	3.905e^-4	0.82	INTRON CG42784
2L	13464220	2L_13464220_INS [dm3] 2L_13464220_INS [dm6]	A	TT	3.905e^-4	0.82	INTRON CG42784
2L	13464232	2L_13464232_DEL [dm3] 2L_13464232_DEL [dm6]	TG	T	3.905e^-4	0.82	INTRON CG42784
2L	13464242	2L_13464242_SNP [dm3] 2L_13464242_SNP [dm6]	C	T	3.905e^-4	0.82	INTRON CG42784
2L	13464243	2L_13464243_SNP [dm3] 2L_13464243_SNP [dm6]	T	A	3.905e^-4	0.82	INTRON CG42784
2L	13464251	2L_13464251_SNP [dm3] 2L_13464251_SNP [dm6]	A	T	3.905e^-4	0.82	INTRON CG42784
2L	13464254	2L_13464254_INS [dm3] 2L_13464254_INS [dm6]	T	CAAA	3.905e^-4	0.82	INTRON CG42784
2L	13464257	2L_13464257_INS [dm3] 2L_13464257_INS [dm6]	G	GA	3.905e^-4	0.82	INTRON CG42784
2L	13464266	2L_13464266_SNP [dm3] 2L_13464266_SNP [dm6]	T	C	3.905e^-4	0.82	INTRON CG42784
2L	13464269	2L_13464269_SNP [dm3] 2L_13464269_SNP [dm6]	A	T	3.905e^-4	0.82	INTRON CG42784
2R	7437191	2R_7437191_SNP [dm3] 2R_11549686_SNP [dm6]	G	A	3.905e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	2757904	X_2757904_SNP [dm3] X_2863871_SNP [dm6]	G	A	3.912e^-4	0.82	INTRON kirre
3R	18640485	3R_18640485_SNP [dm3] 3R_22814763_SNP [dm6]	C	A	3.917e^-4	0.82	SYNONYMOUS_CODING CG13840
3R	9578273	3R_9578273_SNP [dm3] 3R_13752551_SNP [dm6]	G	A	3.969e^-4	0.82	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_sens
2R	18758337	2R_18758337_SNP [dm3] 2R_22870814_SNP [dm6]	C	T	3.983e^-4	0.82	UPSTREAM CG13532 DOWNSTREAM fd59A INTERGENIC
2R	18758357	2R_18758357_SNP [dm3] 2R_22870834_SNP [dm6]	G	T	3.983e^-4	0.82	UPSTREAM CG13532 DOWNSTREAM fd59A INTERGENIC	TF binding site mE1_TFBS_cad
X	12720129	X_12720129_SNP [dm3] X_12826096_SNP [dm6]	A	T	3.985e^-4	0.82	INTRON Pde9
X	12720237	X_12720237_SNP [dm3] X_12826204_SNP [dm6]	A	C	3.985e^-4	0.82	INTRON Pde9
X	10194734	X_10194734_SNP [dm3] X_10300701_SNP [dm6]	A	T	4.013e^-4	0.82	INTRON alpha-Man-I
X	15298316	X_15298316_SNP [dm3] X_15404283_SNP [dm6]	C	T	4.016e^-4	0.82	INTRON Cngl
3L	5820249	3L_5820249_SNP [dm3] 3L_5827149_SNP [dm6]	T	C	4.020e^-4	0.82	INTRON vn	TF binding site mE1_TFBS_chinmo
2R	2477542	2R_2477542_SNP [dm3] 2R_6590037_SNP [dm6]	G	A	4.032e^-4	0.82	INTRON jing
X	19517610	X_19517610_SNP [dm3] X_19623577_SNP [dm6]	A	G	4.049e^-4	0.82	UPSTREAM NAA20 INTRON MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19517620	X_19517620_SNP [dm3] X_19623587_SNP [dm6]	A	G	4.049e^-4	0.82	UPSTREAM NAA20 INTRON MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5212349	X_5212349_SNP [dm3] X_5318316_SNP [dm6]	T	A	4.054e^-4	0.82	SYNONYMOUS_CODING Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	10378420	3L_10378420_SNP [dm3] 3L_10385320_SNP [dm6]	T	C	4.057e^-4	0.82	INTERGENIC
3L	12779800	3L_12779800_SNP [dm3] 3L_12786700_SNP [dm6]	A	G	4.071e^-4	0.82	SYNONYMOUS_CODING Atg1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22786865	3L_22786865_SNP [dm3] 3L_22793765_SNP [dm6]	T	C	4.087e^-4	0.82	UTR_3_PRIME jim
3L	23055776	3L_23055776_SNP [dm3] 3L_23062676_SNP [dm6]	T	C	4.088e^-4	0.82	INTERGENIC	transposable element FlyBase
2L	1428015	2L_1428015_SNP [dm3] 2L_1428015_SNP [dm6]	T	A	4.095e^-4	0.82	UPSTREAM CG43401 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14995996	2R_14995996_SNP [dm3] 2R_19108491_SNP [dm6]	T	G	4.098e^-4	0.82	INTRON 5-HT1A
3R	26735105	3R_26735105_SNP [dm3] 3R_30909383_SNP [dm6]	C	T	4.110e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25365859	3R_25365859_SNP [dm3] 3R_29540137_SNP [dm6]	T	A	4.123e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	957055	3L_957055_SNP [dm3] 3L_957055_SNP [dm6]	A	G	4.142e^-4	0.82	INTRON Glut1
3R	4107681	3R_4107681_SNP [dm3] 3R_8281959_SNP [dm6]	T	C	4.144e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	1650899	2L_1650899_DEL [dm3] 2L_1650899_DEL [dm6]	CC	C	4.162e^-4	0.82	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15852026	2R_15852026_SNP [dm3] 2R_19964521_SNP [dm6]	A	C	4.169e^-4	0.82	INTERGENIC
2L	12842509	2L_12842509_SNP [dm3] 2L_12842509_SNP [dm6]	T	G	4.216e^-4	0.82	DOWNSTREAM CR44971 INTERGENIC
2R	19010481	2R_19010481_SNP [dm3] 2R_23122958_SNP [dm6]	T	A	4.221e^-4	0.82	DOWNSTREAM Klp59C INTERGENIC
2L	13321376	2L_13321376_SNP [dm3] 2L_13321376_SNP [dm6]	A	T	4.227e^-4	0.82	INTRON CG43778
2R	18741663	2R_18741663_SNP [dm3] 2R_22854140_SNP [dm6]	C	T	4.252e^-4	0.82	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16380494	2R_16380494_SNP [dm3] 2R_20492989_SNP [dm6]	C	A	4.283e^-4	0.82	UPSTREAM CR44643 INTERGENIC
3R	10995155	3R_10995155_SNP [dm3] 3R_15169433_SNP [dm6]	A	G	4.284e^-4	0.82	INTRON Gyc88E
2L	5423684	2L_5423684_SNP [dm3] 2L_5423684_SNP [dm6]	T	G	4.287e^-4	0.82	INTERGENIC
2L	5423891	2L_5423891_SNP [dm3] 2L_5423891_SNP [dm6]	C	T	4.287e^-4	0.82	INTERGENIC
2L	10753743	2L_10753743_SNP [dm3] 2L_10753743_SNP [dm6]	C	T	4.302e^-4	0.82	UTR_5_PRIME CG17124 INTRON CG17124
2L	10753745	2L_10753745_SNP [dm3] 2L_10753745_SNP [dm6]	G	A	4.302e^-4	0.82	UTR_5_PRIME CG17124 INTRON CG17124
2L	13129319	2L_13129319_SNP [dm3] 2L_13129319_SNP [dm6]	A	T	4.304e^-4	0.82	INTERGENIC
3R	9529458	3R_9529458_SNP [dm3] 3R_13703736_SNP [dm6]	A	G	4.308e^-4	0.82	SYNONYMOUS_CODING Adgf-D DOWNSTREAM ninaB	TF binding site mE1_TFBS_cad
2L	1428587	2L_1428587_SNP [dm3] 2L_1428587_SNP [dm6]	T	C	4.313e^-4	0.82	UTR_5_PRIME CG43401
X	21910607	X_21910607_SNP [dm3] X_22508771_SNP [dm6]	C	A	4.320e^-4	0.82	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16704809	X_16704809_SNP [dm3] X_16810776_SNP [dm6]	G	C	4.324e^-4	0.82	UPSTREAM CG4829 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16307095	3R_16307095_SNP [dm3] 3R_20481373_SNP [dm6]	C	A	4.342e^-4	0.82	UTR_5_PRIME Gfrl INTRON Gfrl
3R	4992785	3R_4992785_SNP [dm3] 3R_9167063_SNP [dm6]	G	A	4.344e^-4	0.82	INTRON pum
3L	16938408	3L_16938408_INS [dm3] 3L_16945308_INS [dm6]	A	AA	4.379e^-4	0.82	INTRON Obp73a
3L	15586201	3L_15586201_DEL [dm3] 3L_15593101_DEL [dm6]	CTC	C	4.379e^-4	0.82	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8134755	3R_8134755_SNP [dm3] 3R_12309033_SNP [dm6]	G	A	4.394e^-4	0.82	INTERGENIC
2R	3263958	2R_3263958_SNP [dm3] 2R_7376453_SNP [dm6]	A	T	4.396e^-4	0.82	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	12472700	2L_12472700_SNP [dm3] 2L_12472700_SNP [dm6]	C	T	4.399e^-4	0.82	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26051644	3R_26051644_SNP [dm3] 3R_30225922_SNP [dm6]	T	A	4.405e^-4	0.82	INTERGENIC
X	12243303	X_12243303_SNP [dm3] X_12349270_SNP [dm6]	T	G	4.414e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1727243	2L_1727243_SNP [dm3] 2L_1727243_SNP [dm6]	A	G	4.447e^-4	0.82	UTR_5_PRIME Eno INTRON Eno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16928486	X_16928486_SNP [dm3] X_17034453_SNP [dm6]	T	A	4.472e^-4	0.82	INTRON CG45002
2R	12333487	2R_12333487_SNP [dm3] 2R_16445982_SNP [dm6]	T	A	4.477e^-4	0.82	UPSTREAM CG15925 INTERGENIC
2R	19897034	2R_19897034_SNP [dm3] 2R_24009511_SNP [dm6]	C	T	4.477e^-4	0.82	NON_SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo
3L	11513577	3L_11513577_DEL [dm3] 3L_11520477_DEL [dm6]	TTTATT	T	4.506e^-4	0.82	DOWNSTREAM CG11714 INTRON Fuca
2L	15632264	2L_15632264_DEL [dm3] 2L_15632264_DEL [dm6]	CATCAAC	C	4.520e^-4	0.82	UTR_3_PRIME CG18480
X	6537601	X_6537601_SNP [dm3] X_6643568_SNP [dm6]	G	A	4.522e^-4	0.82	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11762905	2R_11762905_SNP [dm3] 2R_15875400_SNP [dm6]	A	G	4.524e^-4	0.82	SYNONYMOUS_CODING sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15647080	3L_15647080_SNP [dm3] 3L_15653980_SNP [dm6]	A	G	4.546e^-4	0.82	DOWNSTREAM Eig71Ed & 1 other INTERGENIC
3L	19654375	3L_19654375_SNP [dm3] 3L_19661275_SNP [dm6]	A	C	4.553e^-4	0.82	INTRON tey
3R	6273996	3R_6273996_SNP [dm3] 3R_10448274_SNP [dm6]	C	T	4.563e^-4	0.82	INTERGENIC
3R	9537229	3R_9537229_SNP [dm3] 3R_13711507_SNP [dm6]	T	C	4.570e^-4	0.82	SYNONYMOUS_CODING primo-2 START_GAINED primo-1 UTR_5_PRIME primo-1 UPSTREAM primo-1 DOWNSTREAM CR34044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15608741	3L_15608741_SNP [dm3] 3L_15615641_SNP [dm6]	C	T	4.576e^-4	0.82	INTRON comm3
3L	15608807	3L_15608807_SNP [dm3] 3L_15615707_SNP [dm6]	C	T	4.576e^-4	0.82	INTRON comm3
3L	15609862	3L_15609862_SNP [dm3] 3L_15616762_SNP [dm6]	A	T	4.576e^-4	0.82	INTRON comm3
3L	15609863	3L_15609863_SNP [dm3] 3L_15616763_SNP [dm6]	C	T	4.576e^-4	0.82	INTRON comm3
3L	15610924	3L_15610924_SNP [dm3] 3L_15617824_SNP [dm6]	T	C	4.576e^-4	0.82	INTRON comm3	TF binding site mE1_TFBS_inv
3L	15611153	3L_15611153_SNP [dm3] 3L_15618053_SNP [dm6]	C	A	4.576e^-4	0.82	INTRON comm3	TF binding site mE1_TFBS_inv
X	20498895	X_20498895_SNP [dm3] X_20627868_SNP [dm6]	A	G	4.578e^-4	0.82	INTERGENIC
3L	14911355	3L_14911355_SNP [dm3] 3L_14918255_SNP [dm6]	A	G	4.579e^-4	0.82	INTRON DCX-EMAP
X	18434004	X_18434004_SNP [dm3] X_18539971_SNP [dm6]	C	A	4.579e^-4	0.82	INTRON Bx
3L	7835460	3L_7835460_SNP [dm3] 3L_7842360_SNP [dm6]	G	A	4.603e^-4	0.82	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	20318452	X_20318452_SNP [dm3] X_20447425_SNP [dm6]	A	G	4.618e^-4	0.82	DOWNSTREAM CG42578 INTERGENIC
X	14298340	X_14298340_SNP [dm3] X_14404307_SNP [dm6]	C	A	4.632e^-4	0.82	INTRON dpr8
2R	11471572	2R_11471572_SNP [dm3] 2R_15584067_SNP [dm6]	G	C	4.639e^-4	0.82	INTERGENIC
2R	11471586	2R_11471586_SNP [dm3] 2R_15584081_SNP [dm6]	A	G	4.639e^-4	0.82	INTERGENIC
2R	11471591	2R_11471591_SNP [dm3] 2R_15584086_SNP [dm6]	A	T	4.639e^-4	0.82	INTERGENIC
2R	11471609	2R_11471609_SNP [dm3] 2R_15584104_SNP [dm6]	T	C	4.639e^-4	0.82	INTERGENIC
3R	15361028	3R_15361028_SNP [dm3] 3R_19535306_SNP [dm6]	C	T	4.643e^-4	0.82	INTRON Dys	TF binding site mE1_TFBS_HSA
2L	4316687	2L_4316687_SNP [dm3] 2L_4316687_SNP [dm6]	A	G	4.646e^-4	0.82	DOWNSTREAM tutl INTRON tutl
3L	7765142	3L_7765142_SNP [dm3] 3L_7772042_SNP [dm6]	A	G	4.646e^-4	0.82	INTRON Clk	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	10722470	2L_10722470_DEL [dm3] 2L_10722470_DEL [dm6]	TA	T	4.646e^-4	0.82	INTERGENIC
3L	18488311	3L_18488311_INS [dm3] 3L_18495211_INS [dm6]	A	ACAATA	4.648e^-4	0.82	INTRON AstC-R2
3L	10181271	3L_10181271_SNP [dm3] 3L_10188171_SNP [dm6]	A	T	4.652e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26078723	3R_26078723_SNP [dm3] 3R_30253001_SNP [dm6]	C	T	4.659e^-4	0.82	UPSTREAM CG18404 DOWNSTREAM CG9682 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3714053	2L_3714053_SNP [dm3] 2L_3714053_SNP [dm6]	G	C	4.683e^-4	0.82	UPSTREAM CG31955 & 1 other INTRON CG2818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14761495	3R_14761495_SNP [dm3] 3R_18935773_SNP [dm6]	T	A	4.685e^-4	0.82	INTRON CG42613
3L	13274146	3L_13274146_SNP [dm3] 3L_13281046_SNP [dm6]	G	A	4.704e^-4	0.82	INTERGENIC
2L	19362106	2L_19362106_SNP [dm3] 2L_19362106_SNP [dm6]	A	T	4.708e^-4	0.82	INTRON dnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	7307312	3R_7307312_SNP [dm3] 3R_11481590_SNP [dm6]	C	T	4.713e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25250108	3R_25250108_SNP [dm3] 3R_29424386_SNP [dm6]	T	G	4.724e^-4	0.82	INTRON Ptp99A
2L	3714072	2L_3714072_SNP [dm3] 2L_3714072_SNP [dm6]	A	C	4.751e^-4	0.82	UPSTREAM CG31955 & 1 other INTRON CG2818	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12545609	2R_12545609_INS [dm3] 2R_16658104_INS [dm6]	A	AA	4.756e^-4	0.82	INTRON Picot
3L	19654325	3L_19654325_INS [dm3] 3L_19661225_INS [dm6]	A	AA	4.756e^-4	0.82	INTRON tey
X	14260187	X_14260187_SNP [dm3] X_14366154_SNP [dm6]	A	G	4.757e^-4	0.82	INTRON dpr8
2L	4904652	2L_4904652_SNP [dm3] 2L_4904652_SNP [dm6]	A	G	4.762e^-4	0.82	SYNONYMOUS_CODING CG2837 DOWNSTREAM CG3036	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7303305	3R_7303305_SNP [dm3] 3R_11477583_SNP [dm6]	T	G	4.767e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12975229	3R_12975229_SNP [dm3] 3R_17149507_SNP [dm6]	G	A	4.785e^-4	0.82	UPSTREAM Det & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18128850	3L_18128850_SNP [dm3] 3L_18135750_SNP [dm6]	G	A	4.798e^-4	0.82	DOWNSTREAM CR44669 INTERGENIC
3L	4802161	3L_4802161_SNP [dm3] 3L_4802161_SNP [dm6]	A	G	4.804e^-4	0.82	DOWNSTREAM CG7509 EXON CR44528
3L	4802172	3L_4802172_SNP [dm3] 3L_4802172_SNP [dm6]	C	T	4.804e^-4	0.82	DOWNSTREAM CG7509 EXON CR44528
3L	12290341	3L_12290341_INS [dm3] 3L_12297241_INS [dm6]	T	TCCCAGTCCACTTT...	4.809e^-4	0.82	INTERGENIC
2L	5797290	2L_5797290_SNP [dm3] 2L_5797290_SNP [dm6]	C	A	4.813e^-4	0.82	INTRON CG9171
3R	4140884	3R_4140884_SNP [dm3] 3R_8315162_SNP [dm6]	A	T	4.834e^-4	0.82	NON_SYNONYMOUS_CODING Coq2 DOWNSTREAM eIF4AIII	TF binding site mE1_TFBS_inv
3R	10614051	3R_10614051_SNP [dm3] 3R_14788329_SNP [dm6]	G	A	4.849e^-4	0.82	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	956975	3L_956975_SNP [dm3] 3L_956975_SNP [dm6]	G	C	4.865e^-4	0.82	INTRON Glut1
2L	2763988	2L_2763988_SNP [dm3] 2L_2763988_SNP [dm6]	A	C	4.886e^-4	0.82	UTR_3_PRIME CG3077 DOWNSTREAM CG3077 & 1 other
2R	18728806	2R_18728806_SNP [dm3] 2R_22841283_SNP [dm6]	C	T	4.887e^-4	0.82	SYNONYMOUS_CODING CG9826	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14230048	2R_14230048_DEL [dm3] 2R_18342543_DEL [dm6]	ATAA	A	4.888e^-4	0.82	INTRON sbb
3L	11141983	3L_11141983_SNP [dm3] 3L_11148883_SNP [dm6]	A	G	4.890e^-4	0.82	DOWNSTREAM CG6216 INTRON CG32082
X	10056228	X_10056228_SNP [dm3] X_10162195_SNP [dm6]	A	G	4.908e^-4	0.82	INTRON CR44894 & 1 other
2L	8010179	2L_8010179_SNP [dm3] 2L_8010179_SNP [dm6]	A	T	4.915e^-4	0.82	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7911801	2L_7911801_SNP [dm3] 2L_7911801_SNP [dm6]	C	T	4.916e^-4	0.82	INTRON Snoo
X	17167501	X_17167501_SNP [dm3] X_17273468_SNP [dm6]	A	G	4.921e^-4	0.82	INTRON f	TF binding site mE1_TFBS_cad
X	7802590	X_7802590_SNP [dm3] X_7908557_SNP [dm6]	T	A	4.938e^-4	0.82	UPSTREAM dpr14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5376612	3L_5376612_DEL [dm3] 3L_5383512_DEL [dm6]	CTGT	A	4.953e^-4	0.82	UPSTREAM Ir64a INTERGENIC
2L	11921294	2L_11921294_SNP [dm3] 2L_11921294_SNP [dm6]	T	C	4.957e^-4	0.82	INTRON Pde1c
X	13460496	X_13460496_SNP [dm3] X_13566463_SNP [dm6]	A	C	4.969e^-4	0.82	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
X	16665876	X_16665876_INS [dm3] X_16771843_INS [dm6]	T	TATTTCTGAT	4.979e^-4	0.82	INTRON if	TF binding site BDTNP1_TFBS_da
3R	13322987	3R_13322987_DEL [dm3] 3R_17497265_DEL [dm6]	CGTGGAGAGACATAC...	C	4.996e^-4	0.82	INTRON Dscam3
3R	26162429	3R_26162429_SNP [dm3] 3R_30336707_SNP [dm6]	C	A	5.025e^-4	0.82	INTRON hdc
2L	14574320	2L_14574320_SNP [dm3] 2L_14574320_SNP [dm6]	G	T	5.057e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12842065	3L_12842065_SNP [dm3] 3L_12848965_SNP [dm6]	A	C	5.080e^-4	0.82	SYNONYMOUS_CODING CG10948	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	12821493	X_12821493_SNP [dm3] X_12927460_SNP [dm6]	T	C	5.087e^-4	0.82	INTRON fne
2L	5645775	2L_5645775_SNP [dm3] 2L_5645775_SNP [dm6]	G	A	5.091e^-4	0.82	INTRON CG31646	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25852732	3R_25852732_DEL [dm3] 3R_30027010_DEL [dm6]	AAG	T	5.101e^-4	0.82	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25852737	3R_25852737_DEL [dm3] 3R_30027015_DEL [dm6]	AGAATATTTACAATT...	A	5.101e^-4	0.82	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25852753	3R_25852753_DEL [dm3] 3R_30027031_DEL [dm6]	GTATATTCCA	G	5.101e^-4	0.82	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25852765	3R_25852765_SNP [dm3] 3R_30027043_SNP [dm6]	A	G	5.101e^-4	0.82	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25852798	3R_25852798_SNP [dm3] 3R_30027076_SNP [dm6]	A	T	5.101e^-4	0.82	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13464122	2L_13464122_SNP [dm3] 2L_13464122_SNP [dm6]	C	G	5.127e^-4	0.82	INTRON CG42784
3L	4832962	3L_4832962_SNP [dm3] 3L_4832962_SNP [dm6]	A	G	5.143e^-4	0.82	NON_SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15995382	3R_15995382_SNP [dm3] 3R_20169660_SNP [dm6]	C	T	5.147e^-4	0.82	INTRON CG5023	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10283142	2L_10283142_SNP [dm3] 2L_10283142_SNP [dm6]	T	C	5.147e^-4	0.82	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
3L	6666830	3L_6666830_INS [dm3] 3L_6673730_INS [dm6]	A	AT	5.188e^-4	0.82	INTERGENIC
3L	8169871	3L_8169871_SNP [dm3] 3L_8176771_SNP [dm6]	G	A	5.188e^-4	0.82	SYNONYMOUS_CODING Nmt UPSTREAM RecQ4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	23426778	3L_23426778_SNP [dm3] 3L_23433678_SNP [dm6]	T	C	5.214e^-4	0.82	INTERGENIC	transposable element FlyBase
3R	12048597	3R_12048597_SNP [dm3] 3R_16222875_SNP [dm6]	C	G	5.242e^-4	0.82	UPSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8435913	3R_8435913_SNP [dm3] 3R_12610191_SNP [dm6]	T	C	5.248e^-4	0.82	INTERGENIC
2R	19886410	2R_19886410_SNP [dm3] 2R_23998887_SNP [dm6]	G	A	5.264e^-4	0.82	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
3L	7772792	3L_7772792_SNP [dm3] 3L_7779692_SNP [dm6]	C	T	5.271e^-4	0.82	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7772801	3L_7772801_SNP [dm3] 3L_7779701_SNP [dm6]	G	C	5.271e^-4	0.82	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2209397	3L_2209397_SNP [dm3] 3L_2209397_SNP [dm6]	C	A	5.274e^-4	0.82	INTERGENIC
X	20498911	X_20498911_SNP [dm3] X_20627884_SNP [dm6]	A	T	5.290e^-4	0.82	INTERGENIC
2R	15201608	2R_15201608_SNP [dm3] 2R_19314103_SNP [dm6]	A	T	5.296e^-4	0.82	INTRON Rgk1	TF binding site BDTNP1_TFBS_twi
2R	17102205	2R_17102205_SNP [dm3] 2R_21214700_SNP [dm6]	A	G	5.296e^-4	0.82	DOWNSTREAM CG15661 INTRON CG4302
2R	17102221	2R_17102221_SNP [dm3] 2R_21214716_SNP [dm6]	T	C	5.296e^-4	0.82	DOWNSTREAM CG15661 INTRON CG4302
2R	17102222	2R_17102222_SNP [dm3] 2R_21214717_SNP [dm6]	C	T	5.296e^-4	0.82	DOWNSTREAM CG15661 INTRON CG4302
2R	18071531	2R_18071531_SNP [dm3] 2R_22184026_SNP [dm6]	G	A	5.296e^-4	0.82	SYNONYMOUS_CODING MED16	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19089288	3R_19089288_SNP [dm3] 3R_23263566_SNP [dm6]	A	T	5.296e^-4	0.82	UTR_3_PRIME orb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1050940	2L_1050940_SNP [dm3] 2L_1050940_SNP [dm6]	G	T	5.302e^-4	0.82	UTR_3_PRIME S DOWNSTREAM S
2L	1050942	2L_1050942_SNP [dm3] 2L_1050942_SNP [dm6]	A	T	5.302e^-4	0.82	UTR_3_PRIME S DOWNSTREAM S
3L	2471326	3L_2471326_SNP [dm3] 3L_2471326_SNP [dm6]	C	T	5.306e^-4	0.82	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	14674963	2L_14674963_SNP [dm3] 2L_14674963_SNP [dm6]	T	G	5.309e^-4	0.82	INTRON osp
X	6594232	X_6594232_SNP [dm3] X_6700199_SNP [dm6]	G	A	5.309e^-4	0.82	UTR_5_PRIME CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6594296	X_6594296_SNP [dm3] X_6700263_SNP [dm6]	G	A	5.309e^-4	0.82	UTR_5_PRIME CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8650712	3L_8650712_SNP [dm3] 3L_8657612_SNP [dm6]	A	T	5.351e^-4	0.82	INTERGENIC
2R	18741176	2R_18741176_SNP [dm3] 2R_22853653_SNP [dm6]	G	A	5.356e^-4	0.82	SYNONYMOUS_CODING CG13531 UPSTREAM RpL23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	927064	3R_927064_SNP [dm3] 3R_5101342_SNP [dm6]	G	T	5.374e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20530224	X_20530224_SNP [dm3] X_20659197_SNP [dm6]	A	G	5.375e^-4	0.82	INTRON Cyp6v1
3L	3033470	3L_3033470_SNP [dm3] 3L_3033470_SNP [dm6]	C	T	5.381e^-4	0.82	INTERGENIC
2L	10688546	2L_10688546_SNP [dm3] 2L_10688546_SNP [dm6]	T	A	5.382e^-4	0.82	DOWNSTREAM CG7294 INTERGENIC
3R	13902587	3R_13902587_SNP [dm3] 3R_18076865_SNP [dm6]	C	T	5.390e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10219732	3L_10219732_INS [dm3] 3L_10226632_INS [dm6]	T	TTTTTAT	5.393e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219734	3L_10219734_SNP [dm3] 3L_10226634_SNP [dm6]	C	A	5.393e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219737	3L_10219737_INS [dm3] 3L_10226637_INS [dm6]	G	GTATTT	5.393e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219743	3L_10219743_SNP [dm3] 3L_10226643_SNP [dm6]	T	A	5.393e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219744	3L_10219744_SNP [dm3] 3L_10226644_SNP [dm6]	A	C	5.393e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219750	3L_10219750_INS [dm3] 3L_10226650_INS [dm6]	A	AAGTTCCTCAAT...	5.393e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219757	3L_10219757_MNP [dm3] 3L_10226657_MNP [dm6]	CAA	TGT	5.393e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219761	3L_10219761_INS [dm3] 3L_10226661_INS [dm6]	T	TATATACAGC	5.393e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219790	3L_10219790_SNP [dm3] 3L_10226690_SNP [dm6]	A	G	5.393e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3453053	2L_3453053_SNP [dm3] 2L_3453053_SNP [dm6]	A	C	5.394e^-4	0.82	SYNONYMOUS_CODING CG12795 DOWNSTREAM Snx1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17900409	2R_17900409_SNP [dm3] 2R_22012904_SNP [dm6]	G	A	5.397e^-4	0.82	INTRON CG34370
2L	6536230	2L_6536230_SNP [dm3] 2L_6536230_SNP [dm6]	T	A	5.397e^-4	0.82	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6470230	2R_6470230_SNP [dm3] 2R_10582725_SNP [dm6]	T	A	5.419e^-4	0.82	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	6470328	2R_6470328_SNP [dm3] 2R_10582823_SNP [dm6]	C	T	5.419e^-4	0.82	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	6470331	2R_6470331_SNP [dm3] 2R_10582826_SNP [dm6]	A	G	5.419e^-4	0.82	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	6470398	2R_6470398_DEL [dm3] 2R_10582893_DEL [dm6]	TT	T	5.419e^-4	0.82	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	6470408	2R_6470408_SNP [dm3] 2R_10582903_SNP [dm6]	T	A	5.419e^-4	0.82	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	3271339	3L_3271339_SNP [dm3] 3L_3271339_SNP [dm6]	C	T	5.419e^-4	0.82	INTRON CG14960
2R	3659431	2R_3659431_SNP [dm3] 2R_7771926_SNP [dm6]	G	A	5.434e^-4	0.82	INTRON CG30497 & 1 other
2R	6144010	2R_6144010_SNP [dm3] 2R_10256505_SNP [dm6]	G	A	5.442e^-4	0.82	UPSTREAM CG12911 INTERGENIC
2R	6144015	2R_6144015_SNP [dm3] 2R_10256510_SNP [dm6]	C	A	5.442e^-4	0.82	UPSTREAM CG12911 INTERGENIC
X	16082234	X_16082234_SNP [dm3] X_16188201_SNP [dm6]	T	C	5.443e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	6907014	2L_6907014_SNP [dm3] 2L_6907014_SNP [dm6]	C	T	5.483e^-4	0.82	SYNONYMOUS_CODING CG13773 DOWNSTREAM Nlg2
2L	956075	2L_956075_SNP [dm3] 2L_956075_SNP [dm6]	A	G	5.487e^-4	0.82	INTRON CG4341
2L	956105	2L_956105_SNP [dm3] 2L_956105_SNP [dm6]	C	T	5.487e^-4	0.82	INTRON CG4341
X	3658294	X_3658294_SNP [dm3] X_3764261_SNP [dm6]	G	C	5.520e^-4	0.82	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13686900	X_13686900_SNP [dm3] X_13792867_SNP [dm6]	C	G	5.524e^-4	0.82	INTRON inaE	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1650910	2L_1650910_SNP [dm3] 2L_1650910_SNP [dm6]	G	A	5.527e^-4	0.82	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23829700	3R_23829700_SNP [dm3] 3R_28003978_SNP [dm6]	A	T	5.537e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25021883	3R_25021883_SNP [dm3] 3R_29196161_SNP [dm6]	A	T	5.542e^-4	0.82	INTERGENIC
3L	15592703	3L_15592703_SNP [dm3] 3L_15599603_SNP [dm6]	C	T	5.549e^-4	0.82	INTRON RhoGAP71E
2L	3423115	2L_3423115_SNP [dm3] 2L_3423115_SNP [dm6]	G	A	5.550e^-4	0.82	UPSTREAM pgant2 INTRON pgant2
2R	16351934	2R_16351934_SNP [dm3] 2R_20464429_SNP [dm6]	C	T	5.571e^-4	0.82	INTRON CG12484	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18432594	2R_18432594_SNP [dm3] 2R_22545089_SNP [dm6]	C	A	5.571e^-4	0.82	INTRON px
3R	10162670	3R_10162670_SNP [dm3] 3R_14336948_SNP [dm6]	T	C	5.571e^-4	0.82	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	10162679	3R_10162679_SNP [dm3] 3R_14336957_SNP [dm6]	T	C	5.571e^-4	0.82	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	10162681	3R_10162681_SNP [dm3] 3R_14336959_SNP [dm6]	T	C	5.571e^-4	0.82	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	10162690	3R_10162690_SNP [dm3] 3R_14336968_SNP [dm6]	C	G	5.571e^-4	0.82	INTRON NK7.1	TF binding site mE1_TFBS_kn
X	17529145	X_17529145_SNP [dm3] X_17635112_SNP [dm6]	C	A	5.571e^-4	0.82	INTRON CG8289	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	17530811	X_17530811_SNP [dm3] X_17636778_SNP [dm6]	T	C	5.571e^-4	0.82	UPSTREAM CG8289 INTRON CG5800	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	17530820	X_17530820_SNP [dm3] X_17636787_SNP [dm6]	A	T	5.571e^-4	0.82	UPSTREAM CG8289 INTRON CG5800	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	17530823	X_17530823_SNP [dm3] X_17636790_SNP [dm6]	G	T	5.571e^-4	0.82	UPSTREAM CG8289 INTRON CG5800	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	17530831	X_17530831_SNP [dm3] X_17636798_SNP [dm6]	T	C	5.571e^-4	0.82	UPSTREAM CG8289 INTRON CG5800	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	17530926	X_17530926_SNP [dm3] X_17636893_SNP [dm6]	C	T	5.571e^-4	0.82	SYNONYMOUS_CODING CG5800 UPSTREAM CG8289	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	19482711	X_19482711_SNP [dm3] X_19588678_SNP [dm6]	G	T	5.571e^-4	0.82	SPLICE_SITE_REGION CG14219 INTRON CG14219
X	21192112	X_21192112_SNP [dm3] X_21321085_SNP [dm6]	C	A	5.571e^-4	0.82	UTR_3_PRIME Dd	TF binding site mE1_TFBS_cad
X	7891763	X_7891763_SNP [dm3] X_7997730_SNP [dm6]	C	T	5.571e^-4	0.82	INTRON Tbh
3R	19703160	3R_19703160_SNP [dm3] 3R_23877438_SNP [dm6]	T	G	5.572e^-4	0.82	INTRON Pli
2L	15472413	2L_15472413_SNP [dm3] 2L_15472413_SNP [dm6]	C	T	5.575e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16880262	3L_16880262_SNP [dm3] 3L_16887162_SNP [dm6]	A	G	5.585e^-4	0.82	UTR_5_PRIME Lmpt INTRON Lmpt
2L	13464078	2L_13464078_SNP [dm3] 2L_13464078_SNP [dm6]	T	A	5.586e^-4	0.82	INTRON CG42784
2L	13464156	2L_13464156_SNP [dm3] 2L_13464156_SNP [dm6]	T	C	5.586e^-4	0.82	INTRON CG42784
X	2312229	X_2312229_SNP [dm3] X_2418196_SNP [dm6]	A	G	5.600e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_sens
3R	10588785	3R_10588785_SNP [dm3] 3R_14763063_SNP [dm6]	G	A	5.603e^-4	0.82	INTRON jvl
2L	5760055	2L_5760055_SNP [dm3] 2L_5760055_SNP [dm6]	A	C	5.607e^-4	0.82	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
X	13463218	X_13463218_INS [dm3] X_13569185_INS [dm6]	T	TAT	5.628e^-4	0.82	INTRON Tango13
2L	15632177	2L_15632177_SNP [dm3] 2L_15632177_SNP [dm6]	T	A	5.629e^-4	0.82	UTR_3_PRIME CG18480
2L	15632228	2L_15632228_SNP [dm3] 2L_15632228_SNP [dm6]	T	A	5.629e^-4	0.82	UTR_3_PRIME CG18480
2R	2477001	2R_2477001_SNP [dm3] 2R_6589496_SNP [dm6]	C	G	5.633e^-4	0.82	INTRON jing
3L	1629983	3L_1629983_SNP [dm3] 3L_1629983_SNP [dm6]	T	C	5.667e^-4	0.82	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	965005	3L_965005_SNP [dm3] 3L_965005_SNP [dm6]	T	C	5.678e^-4	0.82	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19994355	2L_19994355_SNP [dm3] 2L_19994355_SNP [dm6]	C	T	5.682e^-4	0.82	INTRON CG43861	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13687460	X_13687460_SNP [dm3] X_13793427_SNP [dm6]	A	G	5.683e^-4	0.82	INTRON inaE	TF binding site mE1_TFBS_HSA
3L	8664990	3L_8664990_SNP [dm3] 3L_8671890_SNP [dm6]	A	G	5.684e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8665170	3L_8665170_SNP [dm3] 3L_8672070_SNP [dm6]	G	T	5.684e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10025756	2L_10025756_SNP [dm3] 2L_10025756_SNP [dm6]	A	T	5.697e^-4	0.82	UPSTREAM CG13127 INTERGENIC
3R	19087400	3R_19087400_SNP [dm3] 3R_23261678_SNP [dm6]	C	A	5.703e^-4	0.82	UTR_3_PRIME orb
2R	17415259	2R_17415259_SNP [dm3] 2R_21527754_SNP [dm6]	G	A	5.723e^-4	0.82	INTRON Egfr
2R	11968999	2R_11968999_INS [dm3] 2R_16081494_INS [dm6]	C	CG	5.744e^-4	0.82	UTR_3_PRIME Dg DOWNSTREAM Dg
2L	17250326	2L_17250326_SNP [dm3] 2L_17250326_SNP [dm6]	T	C	5.774e^-4	0.82	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	3050570	2L_3050570_SNP [dm3] 2L_3050570_SNP [dm6]	G	C	5.785e^-4	0.82	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26675613	3R_26675613_SNP [dm3] 3R_30849891_SNP [dm6]	G	A	5.787e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26734407	3R_26734407_SNP [dm3] 3R_30908685_SNP [dm6]	A	G	5.787e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26734541	3R_26734541_SNP [dm3] 3R_30908819_SNP [dm6]	C	T	5.787e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15605230	3L_15605230_SNP [dm3] 3L_15612130_SNP [dm6]	G	T	5.790e^-4	0.82	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449
3L	15605236	3L_15605236_SNP [dm3] 3L_15612136_SNP [dm6]	C	T	5.790e^-4	0.82	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449
X	6514412	X_6514412_INS [dm3] X_6620379_INS [dm6]	A	ACCTGGGAGA	5.802e^-4	0.82	INTRON pigs
2L	2990301	2L_2990301_SNP [dm3] 2L_2990301_SNP [dm6]	T	C	5.803e^-4	0.82	SYNONYMOUS_CODING okr DOWNSTREAM Bem46	TF binding site mE1_TFBS_cad
2L	8941919	2L_8941919_SNP [dm3] 2L_8941919_SNP [dm6]	A	G	5.826e^-4	0.82	UTR_5_PRIME CG9510 UPSTREAM CG9510 DOWNSTREAM CG9515	TF binding site mE1_TFBS_cad
3L	14647028	3L_14647028_SNP [dm3] 3L_14653928_SNP [dm6]	T	C	5.828e^-4	0.82	INTRON dlp
2L	1551468	2L_1551468_SNP [dm3] 2L_1551468_SNP [dm6]	A	G	5.839e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13464148	2L_13464148_SNP [dm3] 2L_13464148_SNP [dm6]	C	T	5.840e^-4	0.82	INTRON CG42784
2L	13464159	2L_13464159_SNP [dm3] 2L_13464159_SNP [dm6]	A	G	5.840e^-4	0.82	INTRON CG42784
X	12938070	X_12938070_SNP [dm3] X_13044037_SNP [dm6]	A	T	5.884e^-4	0.82	INTRON rad
X	3381590	X_3381590_SNP [dm3] X_3487557_SNP [dm6]	A	G	5.903e^-4	0.82	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_sens
2R	19685444	2R_19685444_SNP [dm3] 2R_23797921_SNP [dm6]	C	T	5.906e^-4	0.82	UTR_5_PRIME CG9850	TF binding site mE1_TFBS_HSA
X	20146226	X_20146226_SNP [dm3] X_20275200_SNP [dm6]	C	T	5.909e^-4	0.82	INTERGENIC
3R	12975336	3R_12975336_SNP [dm3] 3R_17149614_SNP [dm6]	C	T	5.914e^-4	0.82	UPSTREAM Det & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11762874	2L_11762874_SNP [dm3] 2L_11762874_SNP [dm6]	G	A	5.918e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11471496	2R_11471496_SNP [dm3] 2R_15583991_SNP [dm6]	T	A	5.932e^-4	0.82	INTERGENIC
2R	12408130	2R_12408130_SNP [dm3] 2R_16520625_SNP [dm6]	C	T	5.936e^-4	0.82	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	13500620	2R_13500620_SNP [dm3] 2R_17613115_SNP [dm6]	T	G	5.963e^-4	0.82	INTRON CG10936
2R	17900408	2R_17900408_SNP [dm3] 2R_22012903_SNP [dm6]	C	T	5.968e^-4	0.82	INTRON CG34370
3L	10778527	3L_10778527_SNP [dm3] 3L_10785427_SNP [dm6]	G	A	5.979e^-4	0.82	DOWNSTREAM CR44544 INTERGENIC
2L	8308906	2L_8308906_SNP [dm3] 2L_8308906_SNP [dm6]	C	T	5.987e^-4	0.82	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	12788317	2R_12788317_SNP [dm3] 2R_16900812_SNP [dm6]	A	G	5.995e^-4	0.82	INTRON inaC
2R	18484180	2R_18484180_SNP [dm3] 2R_22596675_SNP [dm6]	T	A	5.995e^-4	0.82	UPSTREAM CG4269 DOWNSTREAM CG3927 EXON CR45328
3L	10219833	3L_10219833_SNP [dm3] 3L_10226733_SNP [dm6]	A	C	5.997e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219855	3L_10219855_SNP [dm3] 3L_10226755_SNP [dm6]	G	T	5.997e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19124970	2R_19124970_SNP [dm3] 2R_23237447_SNP [dm6]	C	T	6.003e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16381345	2R_16381345_SNP [dm3] 2R_20493840_SNP [dm6]	C	T	6.006e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9376362	3R_9376362_SNP [dm3] 3R_13550640_SNP [dm6]	G	A	6.019e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19010489	2R_19010489_SNP [dm3] 2R_23122966_SNP [dm6]	T	G	6.022e^-4	0.82	DOWNSTREAM Klp59C INTERGENIC
2R	19010500	2R_19010500_SNP [dm3] 2R_23122977_SNP [dm6]	G	A	6.022e^-4	0.82	DOWNSTREAM Klp59C INTERGENIC
3R	13701279	3R_13701279_SNP [dm3] 3R_17875557_SNP [dm6]	T	C	6.063e^-4	0.82	INTRON Rim
3R	13701311	3R_13701311_SNP [dm3] 3R_17875589_SNP [dm6]	T	G	6.063e^-4	0.82	INTRON Rim
2L	1726719	2L_1726719_SNP [dm3] 2L_1726719_SNP [dm6]	A	C	6.068e^-4	0.82	INTRON Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2685245	2L_2685245_SNP [dm3] 2L_2685245_SNP [dm6]	T	C	6.073e^-4	0.82	INTRON CG31690
3L	15602326	3L_15602326_SNP [dm3] 3L_15609226_SNP [dm6]	A	G	6.078e^-4	0.82	UTR_3_PRIME CG7650 DOWNSTREAM RhoGAP71E
3L	2617337	3L_2617337_DEL [dm3] 3L_2617337_DEL [dm6]	AGCTTTCAGCTTCA...	A	6.087e^-4	0.82	INTRON Pxn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	21452450	X_21452450_SNP [dm3] X_21581423_SNP [dm6]	A	T	6.111e^-4	0.82	INTERGENIC
2R	6452247	2R_6452247_SNP [dm3] 2R_10564742_SNP [dm6]	C	T	6.138e^-4	0.82	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	21185134	X_21185134_SNP [dm3] X_21314107_SNP [dm6]	C	T	6.146e^-4	0.82	INTRON CG1801
X	21190719	X_21190719_SNP [dm3] X_21319692_SNP [dm6]	G	A	6.146e^-4	0.82	UPSTREAM CG33713 & 1 other DOWNSTREAM Dd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20718933	2R_20718933_SNP [dm3] 2R_24831410_SNP [dm6]	G	A	6.146e^-4	0.82	INTRON Dll	TF binding site mE1_TFBS_chinmo
3R	12926587	3R_12926587_SNP [dm3] 3R_17100865_SNP [dm6]	T	C	6.149e^-4	0.82	INTRON cher
3R	12926613	3R_12926613_SNP [dm3] 3R_17100891_SNP [dm6]	G	T	6.149e^-4	0.82	INTRON cher
3L	7765168	3L_7765168_SNP [dm3] 3L_7772068_SNP [dm6]	A	T	6.152e^-4	0.82	INTRON Clk	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	19935159	2L_19935159_SNP [dm3] 2L_19935159_SNP [dm6]	C	A	6.168e^-4	0.82	UPSTREAM sick & 1 other INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6299837	2L_6299837_SNP [dm3] 2L_6299837_SNP [dm6]	T	G	6.170e^-4	0.82	INTRON Ddr
X	18213027	X_18213027_SNP [dm3] X_18318994_SNP [dm6]	T	G	6.170e^-4	0.82	INTRON CG6023
2R	15909211	2R_15909211_SNP [dm3] 2R_20021706_SNP [dm6]	G	A	6.193e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10219749	3L_10219749_SNP [dm3] 3L_10226649_SNP [dm6]	C	T	6.207e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9816780	3R_9816780_SNP [dm3] 3R_13991058_SNP [dm6]	T	A	6.219e^-4	0.82	INTRON rdx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12720369	X_12720369_SNP [dm3] X_12826336_SNP [dm6]	C	T	6.243e^-4	0.82	INTRON Pde9
2R	11464499	2R_11464499_SNP [dm3] 2R_15576994_SNP [dm6]	A	C	6.255e^-4	0.82	INTERGENIC
2L	2685239	2L_2685239_SNP [dm3] 2L_2685239_SNP [dm6]	A	C	6.255e^-4	0.82	INTRON CG31690
3R	26922113	3R_26922113_SNP [dm3] 3R_31096391_SNP [dm6]	C	T	6.301e^-4	0.82	INTRON CG11317
2L	14359817	2L_14359817_SNP [dm3] 2L_14359817_SNP [dm6]	T	C	6.309e^-4	0.82	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5286160	3R_5286160_SNP [dm3] 3R_9460438_SNP [dm6]	T	A	6.314e^-4	0.82	START_GAINED GstZ2 UTR_5_PRIME GstZ2 DOWNSTREAM CG16779	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5286239	3R_5286239_SNP [dm3] 3R_9460517_SNP [dm6]	C	T	6.314e^-4	0.82	UTR_5_PRIME GstZ2 DOWNSTREAM CG16779	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9723608	2L_9723608_SNP [dm3] 2L_9723608_SNP [dm6]	T	G	6.345e^-4	0.82	INTRON Nckx30C	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14400695	X_14400695_SNP [dm3] X_14506662_SNP [dm6]	G	C	6.352e^-4	0.82	INTERGENIC
3R	25836469	3R_25836469_SNP [dm3] 3R_30010747_SNP [dm6]	G	A	6.354e^-4	0.82	SYNONYMOUS_CODING CG7920 DOWNSTREAM Nlp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	10723837	2L_10723837_SNP [dm3] 2L_10723837_SNP [dm6]	T	A	6.360e^-4	0.82	UPSTREAM CG6431 INTERGENIC
3L	1112484	3L_1112484_SNP [dm3] 3L_1112484_SNP [dm6]	T	G	6.364e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6393440	2R_6393440_SNP [dm3] 2R_10505935_SNP [dm6]	G	A	6.369e^-4	0.82	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	15566572	2R_15566572_SNP [dm3] 2R_19679067_SNP [dm6]	G	T	6.371e^-4	0.82	INTERGENIC
2L	15438219	2L_15438219_SNP [dm3] 2L_15438219_SNP [dm6]	C	T	6.379e^-4	0.82	INTERGENIC
2R	15330039	2R_15330039_SNP [dm3] 2R_19442534_SNP [dm6]	A	C	6.381e^-4	0.82	UPSTREAM snoRNA:Psi28S-2444 DOWNSTREAM Spt5 INTRON RpL11	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	2716614	2R_2716614_SNP [dm3] 2R_6829109_SNP [dm6]	G	A	6.392e^-4	0.82	INTRON CG15236	TF binding site mE1_TFBS_chinmo
3R	17992833	3R_17992833_SNP [dm3] 3R_22167111_SNP [dm6]	T	C	6.395e^-4	0.82	INTRON SKIP	TF binding site mE1_TFBS_Kr
3L	2621884	3L_2621884_SNP [dm3] 3L_2621884_SNP [dm6]	C	G	6.395e^-4	0.82	INTRON Pxn
3L	14239248	3L_14239248_SNP [dm3] 3L_14246148_SNP [dm6]	T	C	6.408e^-4	0.82	UPSTREAM CR44561 INTRON CR44560
3L	4561121	3L_4561121_SNP [dm3] 3L_4561121_SNP [dm6]	T	C	6.415e^-4	0.82	INTRON CG42540
2L	9534662	2L_9534662_SNP [dm3] 2L_9534662_SNP [dm6]	G	T	6.418e^-4	0.82	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo
2L	9534668	2L_9534668_SNP [dm3] 2L_9534668_SNP [dm6]	A	G	6.418e^-4	0.82	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo
3L	10219735	3L_10219735_SNP [dm3] 3L_10226635_SNP [dm6]	G	A	6.421e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219776	3L_10219776_SNP [dm3] 3L_10226676_SNP [dm6]	C	T	6.421e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6594064	X_6594064_SNP [dm3] X_6700031_SNP [dm6]	A	C	6.432e^-4	0.82	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1963454	2L_1963454_SNP [dm3] 2L_1963454_SNP [dm6]	T	G	6.439e^-4	0.82	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	1963488	2L_1963488_DEL [dm3] 2L_1963488_DEL [dm6]	ATTATCAA	A	6.439e^-4	0.82	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	19517526	X_19517526_SNP [dm3] X_19623493_SNP [dm6]	C	G	6.503e^-4	0.82	SYNONYMOUS_CODING MKP-4 UPSTREAM NAA20	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7822616	3R_7822616_SNP [dm3] 3R_11996894_SNP [dm6]	G	A	6.504e^-4	0.82	INTRON Tk
X	3272765	X_3272765_SNP [dm3] X_3378732_SNP [dm6]	C	T	6.512e^-4	0.82	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_dl
3R	7846660	3R_7846660_SNP [dm3] 3R_12020938_SNP [dm6]	C	A	6.522e^-4	0.82	INTERGENIC
3R	16704328	3R_16704328_SNP [dm3] 3R_20878606_SNP [dm6]	T	A	6.552e^-4	0.82	DOWNSTREAM TotZ EXON CR44048
X	21104762	X_21104762_SNP [dm3] X_21233735_SNP [dm6]	G	A	6.553e^-4	0.82	INTRON CG32521
X	21104763	X_21104763_SNP [dm3] X_21233736_SNP [dm6]	A	G	6.553e^-4	0.82	INTRON CG32521
2L	14370466	2L_14370466_INS [dm3] 2L_14370466_INS [dm6]	G	GTGTG	6.569e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	5956799	3L_5956799_SNP [dm3] 3L_5963699_SNP [dm6]	G	T	6.576e^-4	0.82	INTERGENIC
2L	1106404	2L_1106404_SNP [dm3] 2L_1106404_SNP [dm6]	G	A	6.612e^-4	0.82	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2661261	3L_2661261_SNP [dm3] 3L_2661261_SNP [dm6]	G	A	6.615e^-4	0.82	SYNONYMOUS_CODING CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
3L	16909110	3L_16909110_SNP [dm3] 3L_16916010_SNP [dm6]	C	G	6.622e^-4	0.82	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26162432	3R_26162432_SNP [dm3] 3R_30336710_SNP [dm6]	G	A	6.628e^-4	0.82	INTRON hdc
2R	18442840	2R_18442840_SNP [dm3] 2R_22555335_SNP [dm6]	T	C	6.640e^-4	0.82	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3701476	3L_3701476_SNP [dm3] 3L_3701476_SNP [dm6]	C	A	6.644e^-4	0.82	INTERGENIC
2R	12123357	2R_12123357_SNP [dm3] 2R_16235852_SNP [dm6]	C	T	6.668e^-4	0.82	UPSTREAM CG7786 & 1 other INTERGENIC
3R	16568503	3R_16568503_SNP [dm3] 3R_20742781_SNP [dm6]	G	A	6.680e^-4	0.82	DOWNSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad
X	4671909	X_4671909_DEL [dm3] X_4777876_DEL [dm6]	AA	A	6.686e^-4	0.82	UPSTREAM CG2871 INTERGENIC
3R	8345262	3R_8345262_SNP [dm3] 3R_12519540_SNP [dm6]	T	C	6.692e^-4	0.82	INTRON Octbeta3R
3L	22172807	3L_22172807_SNP [dm3] 3L_22179707_SNP [dm6]	G	A	6.709e^-4	0.82	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	12408099	2R_12408099_SNP [dm3] 2R_16520594_SNP [dm6]	C	T	6.754e^-4	0.82	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	8229817	2L_8229817_SNP [dm3] 2L_8229817_SNP [dm6]	G	A	6.763e^-4	0.82	INTRON Pvr
2L	8229819	2L_8229819_SNP [dm3] 2L_8229819_SNP [dm6]	A	C	6.763e^-4	0.82	INTRON Pvr
3R	19703168	3R_19703168_SNP [dm3] 3R_23877446_SNP [dm6]	C	A	6.768e^-4	0.82	INTRON Pli
3L	17594064	3L_17594064_SNP [dm3] 3L_17600964_SNP [dm6]	T	A	6.781e^-4	0.82	INTRON Eip74EF
2R	17101725	2R_17101725_SNP [dm3] 2R_21214220_SNP [dm6]	T	C	6.783e^-4	0.82	SYNONYMOUS_CODING CG4302
3R	10282004	3R_10282004_SNP [dm3] 3R_14456282_SNP [dm6]	G	A	6.793e^-4	0.82	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8169613	3L_8169613_SNP [dm3] 3L_8176513_SNP [dm6]	G	T	6.831e^-4	0.82	SYNONYMOUS_CODING Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13464112	2L_13464112_SNP [dm3] 2L_13464112_SNP [dm6]	A	T	6.854e^-4	0.82	INTRON CG42784
X	12953328	X_12953328_SNP [dm3] X_13059295_SNP [dm6]	T	A	6.855e^-4	0.82	INTRON rad
X	12895282	X_12895282_SNP [dm3] X_13001249_SNP [dm6]	A	G	6.856e^-4	0.82	INTRON rad
3R	15181978	3R_15181978_SNP [dm3] 3R_19356256_SNP [dm6]	C	G	6.862e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	12788102	2R_12788102_SNP [dm3] 2R_16900597_SNP [dm6]	T	C	6.872e^-4	0.82	SYNONYMOUS_CODING inaC
2R	12788135	2R_12788135_SNP [dm3] 2R_16900630_SNP [dm6]	T	C	6.872e^-4	0.82	SYNONYMOUS_CODING inaC
2R	12788150	2R_12788150_SNP [dm3] 2R_16900645_SNP [dm6]	A	G	6.872e^-4	0.82	SYNONYMOUS_CODING inaC
2R	12788320	2R_12788320_SNP [dm3] 2R_16900815_SNP [dm6]	A	C	6.872e^-4	0.82	INTRON inaC
2R	12788518	2R_12788518_SNP [dm3] 2R_16901013_SNP [dm6]	T	C	6.872e^-4	0.82	SYNONYMOUS_CODING inaC
2R	12788562	2R_12788562_SNP [dm3] 2R_16901057_SNP [dm6]	T	G	6.872e^-4	0.82	INTRON inaC
2R	12788564	2R_12788564_SNP [dm3] 2R_16901059_SNP [dm6]	A	G	6.872e^-4	0.82	INTRON inaC
2R	12788746	2R_12788746_SNP [dm3] 2R_16901241_SNP [dm6]	C	T	6.872e^-4	0.82	INTRON inaC
2R	12788764	2R_12788764_SNP [dm3] 2R_16901259_SNP [dm6]	T	A	6.872e^-4	0.82	INTRON inaC
2R	12788772	2R_12788772_SNP [dm3] 2R_16901267_SNP [dm6]	A	T	6.872e^-4	0.82	INTRON inaC
3L	15629426	3L_15629426_SNP [dm3] 3L_15636326_SNP [dm6]	C	T	6.872e^-4	0.82	INTRON comm3
3R	20258941	3R_20258941_SNP [dm3] 3R_24433219_SNP [dm6]	C	A	6.872e^-4	0.82	INTRON nAChRalpha1
X	3917962	X_3917962_SNP [dm3] X_4023929_SNP [dm6]	G	C	6.872e^-4	0.82	INTERGENIC
X	15288975	X_15288975_SNP [dm3] X_15394942_SNP [dm6]	T	G	6.874e^-4	0.82	INTRON Cngl
3L	3569365	3L_3569365_SNP [dm3] 3L_3569365_SNP [dm6]	A	T	6.893e^-4	0.82	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8435917	3R_8435917_SNP [dm3] 3R_12610195_SNP [dm6]	C	T	6.899e^-4	0.82	INTERGENIC
3R	8435920	3R_8435920_SNP [dm3] 3R_12610198_SNP [dm6]	T	C	6.899e^-4	0.82	INTERGENIC
3R	8435921	3R_8435921_SNP [dm3] 3R_12610199_SNP [dm6]	G	T	6.899e^-4	0.82	INTERGENIC
2R	12572245	2R_12572245_DEL [dm3] 2R_16684740_DEL [dm6]	AGTAGTTTCCAA...	A	6.926e^-4	0.82	UPSTREAM CG30463 INTRON CG30463
X	15665108	X_15665108_SNP [dm3] X_15771075_SNP [dm6]	T	C	6.938e^-4	0.82	SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
3R	10162413	3R_10162413_SNP [dm3] 3R_14336691_SNP [dm6]	G	A	6.957e^-4	0.82	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	25245653	3R_25245653_SNP [dm3] 3R_29419931_SNP [dm6]	A	G	6.966e^-4	0.82	SYNONYMOUS_CODING Ptp99A
3L	11585417	3L_11585417_SNP [dm3] 3L_11592317_SNP [dm6]	T	C	6.975e^-4	0.82	DOWNSTREAM CR45672 & 1 other INTERGENIC
2L	7946125	2L_7946125_SNP [dm3] 2L_7946125_SNP [dm6]	T	A	6.979e^-4	0.82	INTRON Snoo
3R	23910901	3R_23910901_SNP [dm3] 3R_28085179_SNP [dm6]	T	C	7.005e^-4	0.82	DOWNSTREAM CG34362 INTRON CG34362
2L	742803	2L_742803_INS [dm3] 2L_742803_INS [dm6]	A	ACATA	7.006e^-4	0.82	INTRON Eaat2
3R	7846448	3R_7846448_SNP [dm3] 3R_12020726_SNP [dm6]	A	G	7.011e^-4	0.82	INTERGENIC
3R	15360021	3R_15360021_SNP [dm3] 3R_19534299_SNP [dm6]	G	C	7.017e^-4	0.82	INTRON Dys
2R	19091722	2R_19091722_SNP [dm3] 2R_23204199_SNP [dm6]	C	A	7.022e^-4	0.82	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	14753114	2L_14753114_SNP [dm3] 2L_14753114_SNP [dm6]	T	A	7.037e^-4	0.82	INTERGENIC
X	3382189	X_3382189_SNP [dm3] X_3488156_SNP [dm6]	C	T	7.051e^-4	0.82	SYNONYMOUS_CODING CG10803 INTRON CR44999	TF binding site BDTNP1_TFBS_dl
3R	8435842	3R_8435842_SNP [dm3] 3R_12610120_SNP [dm6]	A	T	7.057e^-4	0.82	INTERGENIC
X	13460278	X_13460278_SNP [dm3] X_13566245_SNP [dm6]	A	G	7.061e^-4	0.82	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
3L	5022294	3L_5022294_SNP [dm3] 3L_5022294_SNP [dm6]	C	T	7.062e^-4	0.82	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6804573	X_6804573_SNP [dm3] X_6910540_SNP [dm6]	T	G	7.064e^-4	0.82	INTRON CG14431
3L	11253610	3L_11253610_SNP [dm3] 3L_11260510_SNP [dm6]	C	T	7.068e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	8169396	3L_8169396_SNP [dm3] 3L_8176296_SNP [dm6]	A	T	7.081e^-4	0.82	UTR_3_PRIME Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	8170426	3L_8170426_SNP [dm3] 3L_8177326_SNP [dm6]	T	C	7.081e^-4	0.82	SYNONYMOUS_CODING Nmt	TF binding site mE1_TFBS_sens
3L	8170480	3L_8170480_SNP [dm3] 3L_8177380_SNP [dm6]	G	A	7.081e^-4	0.82	SYNONYMOUS_CODING Nmt	TF binding site mE1_TFBS_sens
3L	8650745	3L_8650745_SNP [dm3] 3L_8657645_SNP [dm6]	C	A	7.085e^-4	0.82	INTERGENIC
3L	2622052	3L_2622052_SNP [dm3] 3L_2622052_SNP [dm6]	A	G	7.087e^-4	0.82	INTRON Pxn
3L	7983955	3L_7983955_INS [dm3] 3L_7990855_INS [dm6]	C	CTCGGCGCTTGAATTAC...	7.098e^-4	0.82	INTRON nmo
3L	7984006	3L_7984006_DEL [dm3] 3L_7990906_DEL [dm6]	TGCCACAGTAGCTATAATTG...	T	7.098e^-4	0.82	INTRON nmo	TF binding site mE1_TFBS_cnc
3R	10162567	3R_10162567_SNP [dm3] 3R_14336845_SNP [dm6]	C	G	7.098e^-4	0.82	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	15297213	X_15297213_SNP [dm3] X_15403180_SNP [dm6]	G	A	7.098e^-4	0.82	INTRON Cngl
3R	25852607	3R_25852607_SNP [dm3] 3R_30026885_SNP [dm6]	G	C	7.098e^-4	0.82	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_HSA
3R	25852608	3R_25852608_SNP [dm3] 3R_30026886_SNP [dm6]	T	C	7.098e^-4	0.82	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_HSA
2R	17102345	2R_17102345_INS [dm3] 2R_21214840_INS [dm6]	C	CGGTCGGTTTATTAAC...	7.108e^-4	0.82	DOWNSTREAM CG15661 INTRON CG4302
3R	27249859	3R_27249859_SNP [dm3] 3R_31424137_SNP [dm6]	G	A	7.108e^-4	0.82	INTRON Gprk2
2L	19363380	2L_19363380_SNP [dm3] 2L_19363380_SNP [dm6]	A	G	7.111e^-4	0.82	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26299539	3R_26299539_SNP [dm3] 3R_30473817_SNP [dm6]	C	G	7.119e^-4	0.82	INTRON PH4alphaEFB
2R	17775259	2R_17775259_SNP [dm3] 2R_21887754_SNP [dm6]	C	T	7.122e^-4	0.82	INTRON Fili
X	17533286	X_17533286_SNP [dm3] X_17639253_SNP [dm6]	C	T	7.122e^-4	0.82	UTR_3_PRIME RhoGAPp190 DOWNSTREAM CG5800
3L	9088629	3L_9088629_SNP [dm3] 3L_9095529_SNP [dm6]	C	G	7.131e^-4	0.82	DOWNSTREAM CG32032 INTERGENIC
2L	7329612	2L_7329612_SNP [dm3] 2L_7329612_SNP [dm6]	C	G	7.144e^-4	0.82	UPSTREAM CR45304 INTERGENIC
2L	16317713	2L_16317713_SNP [dm3] 2L_16317713_SNP [dm6]	C	T	7.156e^-4	0.82	INTRON cact	TF binding site BDTNP1_TFBS_twi
2L	13464098	2L_13464098_SNP [dm3] 2L_13464098_SNP [dm6]	A	T	7.167e^-4	0.82	INTRON CG42784
3R	16819141	3R_16819141_SNP [dm3] 3R_20993419_SNP [dm6]	G	C	7.174e^-4	0.82	SYNONYMOUS_CODING Calx	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20751068	X_20751068_DEL [dm3] X_20880041_DEL [dm6]	AA	A	7.182e^-4	0.82	INTRON shakB
3L	22815890	3L_22815890_INS [dm3] 3L_22822790_INS [dm6]	T	TT	7.185e^-4	0.82	INTRON jim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16751442	2R_16751442_SNP [dm3] 2R_20863937_SNP [dm6]	A	G	7.216e^-4	0.82	UTR_5_PRIME CG15227
3L	14642057	3L_14642057_SNP [dm3] 3L_14648957_SNP [dm6]	A	T	7.221e^-4	0.82	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	776023	2R_776023_SNP [dm3] 2R_4888518_SNP [dm6]	G	C	7.221e^-4	0.82	INTERGENIC
2R	786740	2R_786740_SNP [dm3] 2R_4899235_SNP [dm6]	A	T	7.221e^-4	0.82	INTRON CG44102	transposable element FlyBase
2L	13321339	2L_13321339_DEL [dm3] 2L_13321339_DEL [dm6]	CTTCC	C	7.227e^-4	0.82	INTRON CG43778
2L	13321374	2L_13321374_SNP [dm3] 2L_13321374_SNP [dm6]	A	G	7.227e^-4	0.82	INTRON CG43778
3L	15642064	3L_15642064_SNP [dm3] 3L_15648964_SNP [dm6]	T	C	7.233e^-4	0.82	UPSTREAM Eig71Eb DOWNSTREAM Eig71Ea INTRON CG43083
X	20528986	X_20528986_SNP [dm3] X_20657959_SNP [dm6]	G	C	7.242e^-4	0.82	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
2R	17102365	2R_17102365_SNP [dm3] 2R_21214860_SNP [dm6]	T	G	7.254e^-4	0.82	DOWNSTREAM CG15661 INTRON CG4302
3R	24929621	3R_24929621_SNP [dm3] 3R_29103899_SNP [dm6]	A	G	7.270e^-4	0.82	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8309062	2L_8309062_SNP [dm3] 2L_8309062_SNP [dm6]	A	T	7.276e^-4	0.82	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8309068	2L_8309068_SNP [dm3] 2L_8309068_SNP [dm6]	C	T	7.276e^-4	0.82	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7908940	3L_7908940_SNP [dm3] 3L_7915840_SNP [dm6]	C	T	7.283e^-4	0.82	UTR_3_PRIME CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15336800	2L_15336800_SNP [dm3] 2L_15336800_SNP [dm6]	A	G	7.307e^-4	0.82	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15336801	2L_15336801_SNP [dm3] 2L_15336801_SNP [dm6]	C	T	7.307e^-4	0.82	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	21942759	2L_21942759_SNP [dm3] 2L_21942759_SNP [dm6]	G	C	7.313e^-4	0.82	INTERGENIC
3R	4955712	3R_4955712_DEL [dm3] 3R_9129990_DEL [dm6]	AT	A	7.330e^-4	0.82	INTRON pum
2R	16378819	2R_16378819_SNP [dm3] 2R_20491314_SNP [dm6]	A	C	7.350e^-4	0.82	EXON CR44643
2R	16995606	2R_16995606_SNP [dm3] 2R_21108101_SNP [dm6]	G	A	7.377e^-4	0.82	INTRON ktub
2L	1112472	2L_1112472_SNP [dm3] 2L_1112472_SNP [dm6]	C	G	7.379e^-4	0.82	UPSTREAM CG14340 INTRON CG14339
2L	12236603	2L_12236603_INS [dm3] 2L_12236603_INS [dm6]	G	GG	7.380e^-4	0.82	INTRON aret
2R	4741504	2R_4741504_SNP [dm3] 2R_8853999_SNP [dm6]	C	T	7.391e^-4	0.82	UTR_3_PRIME sns
2R	11471554	2R_11471554_SNP [dm3] 2R_15584049_SNP [dm6]	C	A	7.394e^-4	0.82	INTERGENIC
3R	22736335	3R_22736335_INS [dm3] 3R_26910613_INS [dm6]	C	CTTCATCGAC	7.398e^-4	0.82	UTR_3_PRIME T48 DOWNSTREAM Ets97D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
2L	14673642	2L_14673642_SNP [dm3] 2L_14673642_SNP [dm6]	A	G	7.398e^-4	0.82	INTRON osp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15105401	2L_15105401_SNP [dm3] 2L_15105401_SNP [dm6]	C	T	7.405e^-4	0.82	INTERGENIC
X	12237335	X_12237335_SNP [dm3] X_12343302_SNP [dm6]	T	C	7.412e^-4	0.82	INTERGENIC
3R	7846612	3R_7846612_SNP [dm3] 3R_12020890_SNP [dm6]	T	G	7.413e^-4	0.82	INTERGENIC
3R	24289988	3R_24289988_SNP [dm3] 3R_28464266_SNP [dm6]	C	T	7.423e^-4	0.82	INTRON beat-VI
2R	16309285	2R_16309285_SNP [dm3] 2R_20421780_SNP [dm6]	G	A	7.423e^-4	0.82	INTERGENIC
3R	17560570	3R_17560570_SNP [dm3] 3R_21734848_SNP [dm6]	G	A	7.432e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17533129	X_17533129_INS [dm3] X_17639096_INS [dm6]	T	TAT	7.432e^-4	0.82	DOWNSTREAM RhoGAPp190 & 1 other INTERGENIC
3L	1330821	3L_1330821_SNP [dm3] 3L_1330821_SNP [dm6]	T	G	7.452e^-4	0.82	UPSTREAM msd1 INTRON mtacp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1330850	3L_1330850_SNP [dm3] 3L_1330850_SNP [dm6]	T	A	7.452e^-4	0.82	UPSTREAM msd1 INTRON mtacp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6295768	2R_6295768_SNP [dm3] 2R_10408263_SNP [dm6]	T	C	7.458e^-4	0.82	UPSTREAM CG12898 DOWNSTREAM CG43177 & 1 other INTRON CG42732
2L	14353642	2L_14353642_SNP [dm3] 2L_14353642_SNP [dm6]	G	A	7.459e^-4	0.82	INTRON l_2_34Fd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14353648	2L_14353648_SNP [dm3] 2L_14353648_SNP [dm6]	T	A	7.459e^-4	0.82	INTRON l_2_34Fd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9534660	2L_9534660_SNP [dm3] 2L_9534660_SNP [dm6]	C	A	7.465e^-4	0.82	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo
3L	2708979	3L_2708979_SNP [dm3] 3L_2708979_SNP [dm6]	T	C	7.485e^-4	0.82	INTRON Fife
2L	1105930	2L_1105930_SNP [dm3] 2L_1105930_SNP [dm6]	C	A	7.492e^-4	0.82	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad
2L	1105942	2L_1105942_SNP [dm3] 2L_1105942_SNP [dm6]	C	T	7.492e^-4	0.82	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad
2L	1109640	2L_1109640_SNP [dm3] 2L_1109640_SNP [dm6]	C	A	7.492e^-4	0.82	NON_SYNONYMOUS_CODING CG14339	TF binding site mE1_TFBS_chinmo
2L	1116363	2L_1116363_SNP [dm3] 2L_1116363_SNP [dm6]	G	T	7.492e^-4	0.82	INTRON Pino	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	6717727	2L_6717727_SNP [dm3] 2L_6717727_SNP [dm6]	A	G	7.492e^-4	0.82	NON_SYNONYMOUS_CODING Aatf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18604689	2R_18604689_SNP [dm3] 2R_22717184_SNP [dm6]	C	A	7.492e^-4	0.82	SYNONYMOUS_CODING CG30268 DOWNSTREAM jbug
3L	18487755	3L_18487755_SNP [dm3] 3L_18494655_SNP [dm6]	G	A	7.504e^-4	0.82	INTRON AstC-R2
2R	15914631	2R_15914631_SNP [dm3] 2R_20027126_SNP [dm6]	T	A	7.508e^-4	0.82	INTERGENIC
3L	17338134	3L_17338134_SNP [dm3] 3L_17345034_SNP [dm6]	A	G	7.515e^-4	0.82	UTR_3_PRIME Mip UPSTREAM brv2
3L	7986579	3L_7986579_MNP [dm3] 3L_7993479_MNP [dm6]	GTT	TAG	7.517e^-4	0.82	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	7462537	3L_7462537_SNP [dm3] 3L_7469437_SNP [dm6]	T	A	7.518e^-4	0.82	DOWNSTREAM CG8543 & 3 others INTERGENIC
X	20498902	X_20498902_SNP [dm3] X_20627875_SNP [dm6]	A	C	7.518e^-4	0.82	INTERGENIC
2L	2899358	2L_2899358_SNP [dm3] 2L_2899358_SNP [dm6]	C	T	7.519e^-4	0.82	INTRON lilli	TF binding site mE1_TFBS_Trl
2L	12585818	2L_12585818_SNP [dm3] 2L_12585818_SNP [dm6]	A	G	7.550e^-4	0.82	INTERGENIC
3R	16892157	3R_16892157_SNP [dm3] 3R_21066435_SNP [dm6]	T	C	7.566e^-4	0.82	INTRON AnxB9
3R	9310781	3R_9310781_SNP [dm3] 3R_13485059_SNP [dm6]	C	T	7.566e^-4	0.82	INTERGENIC
3L	14911515	3L_14911515_SNP [dm3] 3L_14918415_SNP [dm6]	G	T	7.577e^-4	0.82	INTRON DCX-EMAP
2L	5618957	2L_5618957_SNP [dm3] 2L_5618957_SNP [dm6]	C	T	7.579e^-4	0.82	DOWNSTREAM CR44796 INTERGENIC
2L	4427979	2L_4427979_SNP [dm3] 2L_4427979_SNP [dm6]	A	G	7.594e^-4	0.82	INTRON CG15431
3L	18746849	3L_18746849_SNP [dm3] 3L_18753749_SNP [dm6]	T	G	7.633e^-4	0.82	INTRON ftz-f1
2L	19533250	2L_19533250_SNP [dm3] 2L_19533250_SNP [dm6]	G	A	7.638e^-4	0.82	UPSTREAM CG33116 DOWNSTREAM CG10137 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13888413	2R_13888413_SNP [dm3] 2R_18000908_SNP [dm6]	T	A	7.646e^-4	0.82	INTRON dpr13
2L	11762850	2L_11762850_SNP [dm3] 2L_11762850_SNP [dm6]	T	A	7.663e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11762864	2L_11762864_SNP [dm3] 2L_11762864_SNP [dm6]	T	C	7.663e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11762879	2L_11762879_SNP [dm3] 2L_11762879_SNP [dm6]	T	A	7.663e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7461612	2L_7461612_SNP [dm3] 2L_7461612_SNP [dm6]	T	C	7.672e^-4	0.82	SYNONYMOUS_CODING Gr28b UPSTREAM Gr28b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4469465	2L_4469465_SNP [dm3] 2L_4469465_SNP [dm6]	C	G	7.690e^-4	0.82	SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad
3L	9020201	3L_9020201_SNP [dm3] 3L_9027101_SNP [dm6]	C	G	7.696e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
X	12956239	X_12956239_SNP [dm3] X_13062206_SNP [dm6]	T	G	7.703e^-4	0.82	DOWNSTREAM mir-971 INTRON rad
2R	16309045	2R_16309045_SNP [dm3] 2R_20421540_SNP [dm6]	C	G	7.716e^-4	0.82	INTERGENIC
X	10194370	X_10194370_SNP [dm3] X_10300337_SNP [dm6]	A	G	7.731e^-4	0.82	INTRON alpha-Man-I
2L	2641202	2L_2641202_SNP [dm3] 2L_2641202_SNP [dm6]	G	A	7.733e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11585536	3L_11585536_SNP [dm3] 3L_11592436_SNP [dm6]	A	T	7.748e^-4	0.82	DOWNSTREAM CR45672 & 1 other INTERGENIC
2R	16309049	2R_16309049_SNP [dm3] 2R_20421544_SNP [dm6]	A	T	7.762e^-4	0.82	INTERGENIC
X	9404811	X_9404811_SNP [dm3] X_9510778_SNP [dm6]	G	C	7.764e^-4	0.82	UPSTREAM CG34028 INTRON CG32700
3R	25250142	3R_25250142_SNP [dm3] 3R_29424420_SNP [dm6]	A	T	7.764e^-4	0.82	INTRON Ptp99A
3L	8756577	3L_8756577_SNP [dm3] 3L_8763477_SNP [dm6]	A	C	7.765e^-4	0.82	INTRON Fhos
3L	8756596	3L_8756596_SNP [dm3] 3L_8763496_SNP [dm6]	G	A	7.765e^-4	0.82	INTRON Fhos
3R	9087874	3R_9087874_SNP [dm3] 3R_13262152_SNP [dm6]	A	T	7.765e^-4	0.82	UTR_3_PRIME CG11686 DOWNSTREAM Ravus
3R	9661346	3R_9661346_SNP [dm3] 3R_13835624_SNP [dm6]	C	T	7.766e^-4	0.82	INTRON Nsf2	TF binding site mE1_TFBS_cad
2L	9585319	2L_9585319_DEL [dm3] 2L_9585319_DEL [dm6]	AA	A	7.774e^-4	0.82	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	2650534	2L_2650534_SNP [dm3] 2L_2650534_SNP [dm6]	T	C	7.820e^-4	0.82	SYNONYMOUS_CODING CG33125
3L	22914706	3L_22914706_SNP [dm3] 3L_22921606_SNP [dm6]	T	A	7.823e^-4	0.82	INTRON CG12768	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8345270	3R_8345270_SNP [dm3] 3R_12519548_SNP [dm6]	T	A	7.851e^-4	0.82	INTRON Octbeta3R
2L	2654792	2L_2654792_SNP [dm3] 2L_2654792_SNP [dm6]	A	C	7.862e^-4	0.82	NON_SYNONYMOUS_CODING Or23a UPSTREAM Prosbeta4R2 DOWNSTREAM Prosbeta4R1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5591812	X_5591812_SNP [dm3] X_5697779_SNP [dm6]	T	A	7.865e^-4	0.82	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7908574	3L_7908574_SNP [dm3] 3L_7915474_SNP [dm6]	T	G	7.873e^-4	0.82	UTR_5_PRIME CG32368 UPSTREAM CG8111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16821617	3R_16821617_SNP [dm3] 3R_20995895_SNP [dm6]	G	A	7.880e^-4	0.82	INTRON Calx
3R	16821628	3R_16821628_SNP [dm3] 3R_20995906_SNP [dm6]	T	A	7.880e^-4	0.82	INTRON Calx
3R	23908833	3R_23908833_SNP [dm3] 3R_28083111_SNP [dm6]	A	T	7.919e^-4	0.82	INTRON CG34362
3R	23829710	3R_23829710_SNP [dm3] 3R_28003988_SNP [dm6]	A	C	7.922e^-4	0.82	INTERGENIC
X	20526314	X_20526314_SNP [dm3] X_20655287_SNP [dm6]	C	T	7.939e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12834135	3L_12834135_SNP [dm3] 3L_12841035_SNP [dm6]	G	T	7.944e^-4	0.82	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	11964783	2R_11964783_SNP [dm3] 2R_16077278_SNP [dm6]	G	A	7.951e^-4	0.82	DOWNSTREAM CR43415 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4369107	3R_4369107_SNP [dm3] 3R_8543385_SNP [dm6]	T	G	7.958e^-4	0.82	INTERGENIC
2R	10893903	2R_10893903_SNP [dm3] 2R_15006398_SNP [dm6]	A	G	7.987e^-4	0.82	INTERGENIC
2L	13430646	2L_13430646_SNP [dm3] 2L_13430646_SNP [dm6]	C	T	8.001e^-4	0.82	INTRON CG42784
2L	20468546	2L_20468546_INS [dm3] 2L_20468546_INS [dm6]	T	TTA	8.031e^-4	0.82	INTRON CR44980
2L	16317691	2L_16317691_SNP [dm3] 2L_16317691_SNP [dm6]	C	T	8.031e^-4	0.82	INTRON cact
X	12642800	X_12642800_SNP [dm3] X_12748767_SNP [dm6]	C	T	8.035e^-4	0.82	UTR_3_PRIME CG4004 DOWNSTREAM CG4004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
3L	12780247	3L_12780247_SNP [dm3] 3L_12787147_SNP [dm6]	T	G	8.040e^-4	0.82	INTRON Atg1
2R	20103854	2R_20103854_SNP [dm3] 2R_24216331_SNP [dm6]	C	T	8.043e^-4	0.82	INTRON CG30419	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	19886399	2R_19886399_SNP [dm3] 2R_23998876_SNP [dm6]	G	A	8.063e^-4	0.82	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
X	20527032	X_20527032_SNP [dm3] X_20656005_SNP [dm6]	T	G	8.064e^-4	0.82	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15642535	3L_15642535_SNP [dm3] 3L_15649435_SNP [dm6]	T	A	8.088e^-4	0.82	SYNONYMOUS_CODING Eig71Ea UPSTREAM Eig71Eb DOWNSTREAM CG43083
3L	15648786	3L_15648786_SNP [dm3] 3L_15655686_SNP [dm6]	C	T	8.088e^-4	0.82	NON_SYNONYMOUS_CODING Eig71Ee DOWNSTREAM Eig71Ef
3L	18119927	3L_18119927_SNP [dm3] 3L_18126827_SNP [dm6]	T	C	8.094e^-4	0.82	INTERGENIC
X	12218851	X_12218851_SNP [dm3] X_12324818_SNP [dm6]	A	T	8.104e^-4	0.82	INTRON Ten-a
3R	24213585	3R_24213585_DEL [dm3] 3R_28387863_DEL [dm6]	GG	G	8.113e^-4	0.82	INTERGENIC
3L	12809855	3L_12809855_SNP [dm3] 3L_12816755_SNP [dm6]	A	T	8.115e^-4	0.82	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_sens
2L	12807907	2L_12807907_SNP [dm3] 2L_12807907_SNP [dm6]	A	G	8.117e^-4	0.82	EXON CR43818
3L	11142079	3L_11142079_SNP [dm3] 3L_11148979_SNP [dm6]	A	G	8.124e^-4	0.82	DOWNSTREAM CG6216 INTRON CG32082
3R	26848005	3R_26848005_SNP [dm3] 3R_31022283_SNP [dm6]	A	G	8.131e^-4	0.82	INTERGENIC
3L	7027321	3L_7027321_SNP [dm3] 3L_7034221_SNP [dm6]	A	G	8.138e^-4	0.82	INTRON Mp
2L	5802737	2L_5802737_SNP [dm3] 2L_5802737_SNP [dm6]	C	A	8.139e^-4	0.82	UPSTREAM CG14005 INTRON CG7239	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3450812	2R_3450812_SNP [dm3] 2R_7563307_SNP [dm6]	A	G	8.166e^-4	0.82	UTR_3_PRIME Corin
X	12481595	X_12481595_SNP [dm3] X_12587562_SNP [dm6]	C	T	8.175e^-4	0.82	SYNONYMOUS_CODING LIMK1
X	2706087	X_2706087_SNP [dm3] X_2812054_SNP [dm6]	A	C	8.179e^-4	0.82	INTRON kirre
3L	15606142	3L_15606142_SNP [dm3] 3L_15613042_SNP [dm6]	A	T	8.189e^-4	0.82	UPSTREAM CG13449 DOWNSTREAM comm3 INTERGENIC
2R	13746741	2R_13746741_SNP [dm3] 2R_17859236_SNP [dm6]	C	T	8.189e^-4	0.82	INTRON olf186-F
3L	13584253	3L_13584253_SNP [dm3] 3L_13591153_SNP [dm6]	C	G	8.199e^-4	0.82	INTRON bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16317101	2L_16317101_SNP [dm3] 2L_16317101_SNP [dm6]	G	A	8.201e^-4	0.82	INTRON cact
3R	15321702	3R_15321702_SNP [dm3] 3R_19495980_SNP [dm6]	G	T	8.201e^-4	0.82	INTRON Dys	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	21182720	X_21182720_SNP [dm3] X_21311693_SNP [dm6]	A	T	8.209e^-4	0.82	INTRON CG1801
2R	11969008	2R_11969008_SNP [dm3] 2R_16081503_SNP [dm6]	A	G	8.210e^-4	0.82	UTR_3_PRIME Dg DOWNSTREAM Dg
2R	6596699	2R_6596699_SNP [dm3] 2R_10709194_SNP [dm6]	C	T	8.217e^-4	0.82	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2L	14673565	2L_14673565_INS [dm3] 2L_14673565_INS [dm6]	A	AA	8.231e^-4	0.82	INTRON osp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10135790	2L_10135790_SNP [dm3] 2L_10135790_SNP [dm6]	T	C	8.237e^-4	0.82	INTRON CG44153
2L	3766488	2L_3766488_SNP [dm3] 2L_3766488_SNP [dm6]	C	T	8.238e^-4	0.82	DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
2L	10247834	2L_10247834_SNP [dm3] 2L_10247834_SNP [dm6]	T	A	8.249e^-4	0.82	UPSTREAM chico INTRON bsk
3R	18357574	3R_18357574_SNP [dm3] 3R_22531852_SNP [dm6]	T	C	8.257e^-4	0.82	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
3L	6375442	3L_6375442_DEL [dm3] 3L_6382342_DEL [dm6]	ACAA	A	8.262e^-4	0.82	INTERGENIC
3L	3677793	3L_3677793_SNP [dm3] 3L_3677793_SNP [dm6]	G	A	8.285e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8665125	3L_8665125_SNP [dm3] 3L_8672025_SNP [dm6]	A	C	8.293e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	20257854	X_20257854_SNP [dm3] X_20386827_SNP [dm6]	G	A	8.306e^-4	0.82	INTERGENIC
2L	3680687	2L_3680687_SNP [dm3] 2L_3680687_SNP [dm6]	G	A	8.316e^-4	0.82	INTRON CG34340
2L	3680712	2L_3680712_SNP [dm3] 2L_3680712_SNP [dm6]	T	G	8.316e^-4	0.82	INTRON CG34340
X	13824851	X_13824851_SNP [dm3] X_13930818_SNP [dm6]	A	G	8.322e^-4	0.82	INTRON mamo
3L	7064026	3L_7064026_SNP [dm3] 3L_7070926_SNP [dm6]	T	A	8.350e^-4	0.82	INTRON CG8641
2R	9455395	2R_9455395_SNP [dm3] 2R_13567890_SNP [dm6]	T	A	8.371e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	1061922	3L_1061922_SNP [dm3] 3L_1061922_SNP [dm6]	A	G	8.374e^-4	0.82	INTRON bab1
X	5591823	X_5591823_SNP [dm3] X_5697790_SNP [dm6]	A	G	8.395e^-4	0.82	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8650698	3L_8650698_SNP [dm3] 3L_8657598_SNP [dm6]	T	C	8.403e^-4	0.82	INTERGENIC
3R	7846663	3R_7846663_SNP [dm3] 3R_12020941_SNP [dm6]	G	A	8.406e^-4	0.82	INTERGENIC
3R	10182916	3R_10182916_SNP [dm3] 3R_14357194_SNP [dm6]	C	T	8.407e^-4	0.82	INTRON NK7.1
3L	9197497	3L_9197497_SNP [dm3] 3L_9204397_SNP [dm6]	A	G	8.414e^-4	0.82	SYNONYMOUS_CODING Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	11762858	2L_11762858_SNP [dm3] 2L_11762858_SNP [dm6]	G	A	8.420e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7846401	3R_7846401_SNP [dm3] 3R_12020679_SNP [dm6]	T	C	8.435e^-4	0.82	INTERGENIC
2R	10348531	2R_10348531_SNP [dm3] 2R_14461026_SNP [dm6]	G	A	8.439e^-4	0.82	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	6507026	2L_6507026_SNP [dm3] 2L_6507026_SNP [dm6]	C	T	8.453e^-4	0.82	DOWNSTREAM CR44775 INTRON CG31637
3R	4701050	3R_4701050_SNP [dm3] 3R_8875328_SNP [dm6]	C	T	8.453e^-4	0.82	INTRON pyd
X	17673061	X_17673061_INS [dm3] X_17779028_INS [dm6]	G	TCCATTTTTTCGACGGCGTT...	8.468e^-4	0.82	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18844922	3L_18844922_SNP [dm3] 3L_18851822_SNP [dm6]	A	G	8.470e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18601488	3R_18601488_SNP [dm3] 3R_22775766_SNP [dm6]	C	T	8.477e^-4	0.82	SYNONYMOUS_CODING Usp12-46 INTRON CG7029	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27389292	3R_27389292_DEL [dm3] 3R_31563570_DEL [dm6]	TATCT	T	8.478e^-4	0.82	INTRON nyo
3R	27389297	3R_27389297_INS [dm3] 3R_31563575_INS [dm6]	T	TAG	8.478e^-4	0.82	INTRON nyo
X	11652072	X_11652072_SNP [dm3] X_11758039_SNP [dm6]	T	G	8.480e^-4	0.82	INTRON m
3L	4341783	3L_4341783_DEL [dm3] 3L_4341783_DEL [dm6]	AA	A	8.484e^-4	0.82	INTRON Cip4
3L	15647762	3L_15647762_SNP [dm3] 3L_15654662_SNP [dm6]	C	A	8.488e^-4	0.82	SYNONYMOUS_CODING Eig71Ee
3R	7308144	3R_7308144_SNP [dm3] 3R_11482422_SNP [dm6]	T	C	8.489e^-4	0.82	INTERGENIC
3R	25250143	3R_25250143_SNP [dm3] 3R_29424421_SNP [dm6]	T	C	8.498e^-4	0.82	INTRON Ptp99A
3R	25250146	3R_25250146_SNP [dm3] 3R_29424424_SNP [dm6]	A	T	8.498e^-4	0.82	SPLICE_SITE_REGION Ptp99A INTRON Ptp99A
2L	14088975	2L_14088975_SNP [dm3] 2L_14088975_SNP [dm6]	A	G	8.509e^-4	0.82	INTRON nAChRalpha5
3L	536161	3L_536161_SNP [dm3] 3L_536161_SNP [dm6]	A	G	8.517e^-4	0.82	INTRON klar
3L	1383873	3L_1383873_SNP [dm3] 3L_1383873_SNP [dm6]	A	C	8.542e^-4	0.82	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
3L	11634311	3L_11634311_SNP [dm3] 3L_11641211_SNP [dm6]	T	C	8.543e^-4	0.82	INTRON CG32091	TF binding site mE1_TFBS_chinmo
3L	1908301	3L_1908301_SNP [dm3] 3L_1908301_SNP [dm6]	T	C	8.550e^-4	0.82	INTRON CG1887
3R	7525925	3R_7525925_SNP [dm3] 3R_11700203_SNP [dm6]	C	T	8.583e^-4	0.82	UPSTREAM CG14718 INTERGENIC
2L	14352150	2L_14352150_SNP [dm3] 2L_14352150_SNP [dm6]	A	C	8.602e^-4	0.82	UTR_5_PRIME CG43052 UPSTREAM l_2_34Fc DOWNSTREAM l_2_34Fd
2R	17431824	2R_17431824_SNP [dm3] 2R_21544319_SNP [dm6]	G	A	8.624e^-4	0.82	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	13464138	2L_13464138_SNP [dm3] 2L_13464138_SNP [dm6]	G	T	8.627e^-4	0.82	INTRON CG42784
3L	2510264	3L_2510264_SNP [dm3] 3L_2510264_SNP [dm6]	T	C	8.646e^-4	0.82	NON_SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7851932	3R_7851932_SNP [dm3] 3R_12026210_SNP [dm6]	A	T	8.649e^-4	0.82	INTERGENIC
3L	10798071	3L_10798071_SNP [dm3] 3L_10804971_SNP [dm6]	G	A	8.654e^-4	0.82	DOWNSTREAM CR44347 EXON CR44347
3R	6978297	3R_6978297_SNP [dm3] 3R_11152575_SNP [dm6]	C	T	8.654e^-4	0.82	SYNONYMOUS_CODING Ugt86Di

By genomic position
Variant impact
Gene name

productivityTotal phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results