DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.135e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.02104

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1717 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	6622403	2R_6622403_SNP [dm3] 2R_10734898_SNP [dm6]	C	T	1.892e^-6	0.781	UPSTREAM CG7220 INTRON CG7220
2L	5459601	2L_5459601_SNP [dm3] 2L_5459601_SNP [dm6]	T	C	3.525e^-6	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14748120	X_14748120_SNP [dm3] X_14854087_SNP [dm6]	A	G	4.143e^-6	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748327	X_14748327_SNP [dm3] X_14854294_SNP [dm6]	A	T	4.143e^-6	0.781	DOWNSTREAM CG9519 INTRON Flo2
3L	7449822	3L_7449822_SNP [dm3] 3L_7456722_SNP [dm6]	A	G	4.312e^-6	0.781	SYNONYMOUS_CODING ppk26
3L	7449825	3L_7449825_SNP [dm3] 3L_7456725_SNP [dm6]	C	T	4.312e^-6	0.781	SYNONYMOUS_CODING ppk26
X	20286602	X_20286602_SNP [dm3] X_20415575_SNP [dm6]	G	A	5.365e^-6	0.781	UPSTREAM Obp19a INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14748016	X_14748016_SNP [dm3] X_14853983_SNP [dm6]	C	A	5.382e^-6	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2R	7266250	2R_7266250_SNP [dm3] 2R_11378745_SNP [dm6]	C	A	6.429e^-6	0.781	INTRON Tsp47F
3L	11388928	3L_11388928_SNP [dm3] 3L_11395828_SNP [dm6]	A	G	7.184e^-6	0.781	DOWNSTREAM CG11726 INTERGENIC
X	14747743	X_14747743_SNP [dm3] X_14853710_SNP [dm6]	A	G	7.272e^-6	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	22839348	3L_22839348_SNP [dm3] 3L_22846248_SNP [dm6]	G	C	7.502e^-6	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6622249	2R_6622249_INS [dm3] 2R_10734744_INS [dm6]	A	AA	7.642e^-6	0.781	UPSTREAM CG7220 INTRON CG7220
2R	6622252	2R_6622252_MNP [dm3] 2R_10734747_MNP [dm6]	TAC	GTA	7.642e^-6	0.781	UPSTREAM CG7220 INTRON CG7220
2R	6622259	2R_6622259_SNP [dm3] 2R_10734754_SNP [dm6]	C	G	7.642e^-6	0.781	UPSTREAM CG7220 INTRON CG7220
3L	22831215	3L_22831215_SNP [dm3] 3L_22838115_SNP [dm6]	C	A	9.497e^-6	0.781	UTR_3_PRIME CG11226	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10529846	2R_10529846_SNP [dm3] 2R_14642341_SNP [dm6]	T	G	9.766e^-6	0.781	INTERGENIC
2R	10529851	2R_10529851_SNP [dm3] 2R_14642346_SNP [dm6]	A	G	9.766e^-6	0.781	INTERGENIC
X	14748377	X_14748377_SNP [dm3] X_14854344_SNP [dm6]	T	C	1.126e^-5	0.781	UTR_3_PRIME CG9519 INTRON Flo2
X	14746199	X_14746199_SNP [dm3] X_14852166_SNP [dm6]	C	T	1.155e^-5	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14748166	X_14748166_SNP [dm3] X_14854133_SNP [dm6]	G	T	1.164e^-5	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748179	X_14748179_SNP [dm3] X_14854146_SNP [dm6]	A	T	1.164e^-5	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748180	X_14748180_SNP [dm3] X_14854147_SNP [dm6]	C	T	1.164e^-5	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2L	11609712	2L_11609712_SNP [dm3] 2L_11609712_SNP [dm6]	T	C	1.274e^-5	0.781	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
2R	10454281	2R_10454281_SNP [dm3] 2R_14566776_SNP [dm6]	G	C	1.396e^-5	0.781	INTRON ttv
3L	22840382	3L_22840382_SNP [dm3] 3L_22847282_SNP [dm6]	G	T	1.435e^-5	0.781	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14747991	X_14747991_SNP [dm3] X_14853958_SNP [dm6]	T	C	1.564e^-5	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14747941	X_14747941_SNP [dm3] X_14853908_SNP [dm6]	T	A	1.745e^-5	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3R	10915767	3R_10915767_DEL [dm3] 3R_15090045_DEL [dm6]	ATAGATTCAATTCTACA...	A	1.746e^-5	0.781	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11359686	3L_11359686_SNP [dm3] 3L_11366586_SNP [dm6]	T	G	1.776e^-5	0.781	DOWNSTREAM CR45036 INTERGENIC	TF binding site mE1_TFBS_inv
X	14747757	X_14747757_SNP [dm3] X_14853724_SNP [dm6]	T	C	1.915e^-5	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	19917857	3L_19917857_DEL [dm3] 3L_19924757_DEL [dm6]	TA	G	1.970e^-5	0.781	UPSTREAM Grasp65 DOWNSTREAM CG7770 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12438864	X_12438864_SNP [dm3] X_12544831_SNP [dm6]	T	A	1.971e^-5	0.781	INTRON CG43921
X	14748028	X_14748028_SNP [dm3] X_14853995_SNP [dm6]	G	T	2.000e^-5	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	17181219	X_17181219_SNP [dm3] X_17287186_SNP [dm6]	G	A	2.073e^-5	0.781	SYNONYMOUS_CODING Fim INTRON CG5445	TF binding site mE1_TFBS_HSA
X	2908434	X_2908434_SNP [dm3] X_3014401_SNP [dm6]	G	A	2.121e^-5	0.781	INTRON kirre
3R	26077306	3R_26077306_SNP [dm3] 3R_30251584_SNP [dm6]	A	G	2.321e^-5	0.781	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	22839638	3L_22839638_SNP [dm3] 3L_22846538_SNP [dm6]	G	C	2.338e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11900713	3R_11900713_SNP [dm3] 3R_16074991_SNP [dm6]	A	T	2.351e^-5	0.781	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5462385	2L_5462385_INS [dm3] 2L_5462385_INS [dm6]	T	TCTCGT	2.372e^-5	0.781	INTRON mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	5483492	X_5483492_SNP [dm3] X_5589459_SNP [dm6]	G	A	2.447e^-5	0.781	INTERGENIC	TF binding site mE1_TFBS_inv
X	12336269	X_12336269_SNP [dm3] X_12442236_SNP [dm6]	A	G	2.579e^-5	0.781	INTRON Pkcdelta
3L	10138347	3L_10138347_SNP [dm3] 3L_10145247_SNP [dm6]	C	T	2.693e^-5	0.781	INTERGENIC
X	14746178	X_14746178_SNP [dm3] X_14852145_SNP [dm6]	A	C	2.729e^-5	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19204995	3R_19204995_SNP [dm3] 3R_23379273_SNP [dm6]	A	G	2.819e^-5	0.781	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11925572	3L_11925572_SNP [dm3] 3L_11932472_SNP [dm6]	T	G	2.825e^-5	0.781	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18083332	3L_18083332_SNP [dm3] 3L_18090232_SNP [dm6]	T	G	2.842e^-5	0.781	INTRON CG13698
3R	26077305	3R_26077305_SNP [dm3] 3R_30251583_SNP [dm6]	A	T	2.865e^-5	0.781	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2L	19295258	2L_19295258_SNP [dm3] 2L_19295258_SNP [dm6]	A	G	3.084e^-5	0.781	INTERGENIC
3L	4064248	3L_4064248_SNP [dm3] 3L_4064248_SNP [dm6]	A	T	3.201e^-5	0.781	UTR_3_PRIME dib & 1 other	TF binding site mE1_TFBS_cad
X	6828122	X_6828122_SNP [dm3] X_6934089_SNP [dm6]	C	G	3.259e^-5	0.781	INTRON CG14431
3R	18700052	3R_18700052_SNP [dm3] 3R_22874330_SNP [dm6]	G	C	3.278e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2908522	X_2908522_SNP [dm3] X_3014489_SNP [dm6]	G	A	3.278e^-5	0.781	INTRON kirre
3R	6711687	3R_6711687_SNP [dm3] 3R_10885965_SNP [dm6]	C	T	3.387e^-5	0.781	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8177294	2R_8177294_SNP [dm3] 2R_12289789_SNP [dm6]	T	C	3.415e^-5	0.781	UPSTREAM CG42700 INTRON CG42700
2R	8177295	2R_8177295_SNP [dm3] 2R_12289790_SNP [dm6]	T	C	3.415e^-5	0.781	UPSTREAM CG42700 INTRON CG42700
2L	1617410	2L_1617410_DEL [dm3] 2L_1617410_DEL [dm6]	AA	A	3.500e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	12336250	X_12336250_SNP [dm3] X_12442217_SNP [dm6]	A	C	3.595e^-5	0.781	INTRON Pkcdelta
3R	15334321	3R_15334321_SNP [dm3] 3R_19508599_SNP [dm6]	G	T	3.715e^-5	0.781	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
3R	20377587	3R_20377587_SNP [dm3] 3R_24551865_SNP [dm6]	T	C	3.831e^-5	0.781	INTRON Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19655670	3R_19655670_SNP [dm3] 3R_23829948_SNP [dm6]	C	T	3.832e^-5	0.781	INTRON CG34355
2L	8503577	2L_8503577_SNP [dm3] 2L_8503577_SNP [dm6]	C	T	3.871e^-5	0.781	INTRON Dh31
X	9095176	X_9095176_SNP [dm3] X_9201143_SNP [dm6]	C	T	3.886e^-5	0.781	INTRON su_r_
3L	11388971	3L_11388971_INS [dm3] 3L_11395871_INS [dm6]	A	AT	3.935e^-5	0.781	DOWNSTREAM CG11726 INTERGENIC
X	14747963	X_14747963_SNP [dm3] X_14853930_SNP [dm6]	A	T	4.060e^-5	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	22844112	3L_22844112_SNP [dm3] 3L_22851012_SNP [dm6]	C	T	4.105e^-5	0.781	INTRON CR43426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	6721222	3R_6721222_SNP [dm3] 3R_10895500_SNP [dm6]	C	A	4.140e^-5	0.781	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	6721449	3R_6721449_SNP [dm3] 3R_10895727_SNP [dm6]	A	T	4.140e^-5	0.781	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	18029073	3L_18029073_SNP [dm3] 3L_18035973_SNP [dm6]	G	A	4.171e^-5	0.781	INTRON Eip75B
X	3003793	X_3003793_SNP [dm3] X_3109760_SNP [dm6]	C	T	4.202e^-5	0.781	INTRON kirre
2L	19295226	2L_19295226_SNP [dm3] 2L_19295226_SNP [dm6]	C	T	4.214e^-5	0.781	INTERGENIC
X	12336300	X_12336300_SNP [dm3] X_12442267_SNP [dm6]	A	T	4.228e^-5	0.781	INTRON Pkcdelta
2R	17297680	2R_17297680_SNP [dm3] 2R_21410175_SNP [dm6]	A	C	4.252e^-5	0.781	INTRON Sdc
3R	16355299	3R_16355299_SNP [dm3] 3R_20529577_SNP [dm6]	A	T	4.263e^-5	0.781	INTERGENIC
3L	11925809	3L_11925809_SNP [dm3] 3L_11932709_SNP [dm6]	A	G	4.291e^-5	0.781	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7266275	2R_7266275_SNP [dm3] 2R_11378770_SNP [dm6]	T	G	4.322e^-5	0.781	INTRON Tsp47F
2R	10529806	2R_10529806_SNP [dm3] 2R_14642301_SNP [dm6]	T	C	4.374e^-5	0.781	INTERGENIC
3R	6725942	3R_6725942_SNP [dm3] 3R_10900220_SNP [dm6]	A	T	4.422e^-5	0.781	INTERGENIC
X	12336260	X_12336260_SNP [dm3] X_12442227_SNP [dm6]	A	C	4.603e^-5	0.781	INTRON Pkcdelta
X	14746220	X_14746220_SNP [dm3] X_14852187_SNP [dm6]	C	G	4.721e^-5	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14746250	X_14746250_SNP [dm3] X_14852217_SNP [dm6]	T	C	4.721e^-5	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17926749	2R_17926749_SNP [dm3] 2R_22039244_SNP [dm6]	A	G	4.797e^-5	0.781	INTRON CG34370
2R	8185395	2R_8185395_SNP [dm3] 2R_12297890_SNP [dm6]	A	C	4.925e^-5	0.781	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
2R	6621696	2R_6621696_SNP [dm3] 2R_10734191_SNP [dm6]	A	G	5.179e^-5	0.781	INTRON CG7220
3R	6724270	3R_6724270_SNP [dm3] 3R_10898548_SNP [dm6]	C	A	5.186e^-5	0.781	EXON CR45578	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2565606	X_2565606_SNP [dm3] X_2671573_SNP [dm6]	T	C	5.374e^-5	0.781	INTRON sgg
2R	14170739	2R_14170739_SNP [dm3] 2R_18283234_SNP [dm6]	A	G	5.517e^-5	0.781	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14170753	2R_14170753_SNP [dm3] 2R_18283248_SNP [dm6]	A	C	5.517e^-5	0.781	SPLICE_SITE_REGION sbb INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6723020	3R_6723020_SNP [dm3] 3R_10897298_SNP [dm6]	T	G	5.561e^-5	0.781	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	6723042	3R_6723042_SNP [dm3] 3R_10897320_SNP [dm6]	T	G	5.561e^-5	0.781	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723062	3R_6723062_SNP [dm3] 3R_10897340_SNP [dm6]	A	T	5.561e^-5	0.781	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723105	3R_6723105_SNP [dm3] 3R_10897383_SNP [dm6]	G	A	5.561e^-5	0.781	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723117	3R_6723117_SNP [dm3] 3R_10897395_SNP [dm6]	C	A	5.561e^-5	0.781	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723422	3R_6723422_SNP [dm3] 3R_10897700_SNP [dm6]	G	C	5.561e^-5	0.781	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3R	6725863	3R_6725863_SNP [dm3] 3R_10900141_SNP [dm6]	A	T	5.561e^-5	0.781	INTERGENIC
3R	6728775	3R_6728775_SNP [dm3] 3R_10903053_SNP [dm6]	C	T	5.561e^-5	0.781	INTERGENIC
3R	6734973	3R_6734973_SNP [dm3] 3R_10909251_SNP [dm6]	G	A	5.561e^-5	0.781	INTERGENIC
3R	6735382	3R_6735382_SNP [dm3] 3R_10909660_SNP [dm6]	C	A	5.561e^-5	0.781	INTERGENIC
3L	22847103	3L_22847103_SNP [dm3] 3L_22854003_SNP [dm6]	A	C	5.659e^-5	0.781	UPSTREAM CG32462 DOWNSTREAM CG32459 & 1 other EXON CR43426
2R	4071675	2R_4071675_SNP [dm3] 2R_8184170_SNP [dm6]	G	A	5.718e^-5	0.781	INTRON LRP1
3L	22840909	3L_22840909_SNP [dm3] 3L_22847809_SNP [dm6]	G	C	5.768e^-5	0.781	UPSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	22840930	3L_22840930_SNP [dm3] 3L_22847830_SNP [dm6]	G	T	5.768e^-5	0.781	UPSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14747995	X_14747995_SNP [dm3] X_14853962_SNP [dm6]	G	A	5.770e^-5	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2L	17925407	2L_17925407_SNP [dm3] 2L_17925407_SNP [dm6]	T	G	5.803e^-5	0.781	INTERGENIC
3L	778267	3L_778267_SNP [dm3] 3L_778267_SNP [dm6]	C	T	5.816e^-5	0.781	INTERGENIC
3L	11937635	3L_11937635_SNP [dm3] 3L_11944535_SNP [dm6]	G	A	5.860e^-5	0.781	SYNONYMOUS_CODING CG5883
3L	22840552	3L_22840552_SNP [dm3] 3L_22847452_SNP [dm6]	C	T	5.865e^-5	0.781	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22840557	3L_22840557_SNP [dm3] 3L_22847457_SNP [dm6]	T	A	5.865e^-5	0.781	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6722870	3R_6722870_SNP [dm3] 3R_10897148_SNP [dm6]	G	A	5.931e^-5	0.781	DOWNSTREAM Leash & 1 other EXON CR45577	TF binding site BDTNP1_TFBS_sna
2R	2024692	2R_2024692_SNP [dm3] 2R_6137187_SNP [dm6]	T	A	6.051e^-5	0.781	UPSTREAM CG14589 INTRON EcR
3L	18144818	3L_18144818_SNP [dm3] 3L_18151718_SNP [dm6]	T	G	6.099e^-5	0.781	INTRON CG7330
3L	11926621	3L_11926621_SNP [dm3] 3L_11933521_SNP [dm6]	C	G	6.237e^-5	0.781	SPLICE_SITE_REGION byn INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11925983	3L_11925983_SNP [dm3] 3L_11932883_SNP [dm6]	T	C	6.281e^-5	0.781	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8177177	2R_8177177_SNP [dm3] 2R_12289672_SNP [dm6]	A	G	6.353e^-5	0.781	INTRON CG42700
3R	11901121	3R_11901121_SNP [dm3] 3R_16075399_SNP [dm6]	A	G	6.380e^-5	0.781	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8381886	3L_8381886_SNP [dm3] 3L_8388786_SNP [dm6]	T	A	6.482e^-5	0.781	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad
X	9095198	X_9095198_DEL [dm3] X_9201165_DEL [dm6]	TGTGAATAGCCATAACTATT...	T	6.528e^-5	0.781	INTRON su_r_
3R	10412967	3R_10412967_SNP [dm3] 3R_14587245_SNP [dm6]	C	G	6.611e^-5	0.781	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12336255	X_12336255_SNP [dm3] X_12442222_SNP [dm6]	T	C	6.619e^-5	0.781	INTRON Pkcdelta
3L	5910833	3L_5910833_SNP [dm3] 3L_5917733_SNP [dm6]	A	G	6.702e^-5	0.781	UPSTREAM CR45167 DOWNSTREAM CG10483 & 1 other INTERGENIC
2R	6710694	2R_6710694_SNP [dm3] 2R_10823189_SNP [dm6]	G	C	6.744e^-5	0.781	SYNONYMOUS_CODING CG12343 UPSTREAM CG12325 DOWNSTREAM RpS15Ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2024617	2R_2024617_INS [dm3] 2R_6137112_INS [dm6]	T	TTAT	6.757e^-5	0.781	UPSTREAM CG14589 INTRON EcR
3R	15309269	3R_15309269_SNP [dm3] 3R_19483547_SNP [dm6]	C	T	6.829e^-5	0.781	INTRON Dys
X	15249142	X_15249142_SNP [dm3] X_15355109_SNP [dm6]	G	C	7.283e^-5	0.781	INTRON acj6
2R	6575248	2R_6575248_SNP [dm3] 2R_10687743_SNP [dm6]	A	G	7.297e^-5	0.781	INTRON stan
2R	6575273	2R_6575273_SNP [dm3] 2R_10687768_SNP [dm6]	G	A	7.297e^-5	0.781	INTRON stan
2L	17925425	2L_17925425_SNP [dm3] 2L_17925425_SNP [dm6]	A	T	7.346e^-5	0.781	INTERGENIC
3L	10137081	3L_10137081_SNP [dm3] 3L_10143981_SNP [dm6]	C	T	7.353e^-5	0.781	INTERGENIC
3R	15333095	3R_15333095_SNP [dm3] 3R_19507373_SNP [dm6]	T	A	7.373e^-5	0.781	INTRON Dys
2R	18074793	2R_18074793_SNP [dm3] 2R_22187288_SNP [dm6]	C	G	7.405e^-5	0.781	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2565595	X_2565595_SNP [dm3] X_2671562_SNP [dm6]	T	C	7.481e^-5	0.781	INTRON sgg
X	14747090	X_14747090_SNP [dm3] X_14853057_SNP [dm6]	A	G	7.603e^-5	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2
X	14750834	X_14750834_SNP [dm3] X_14856801_SNP [dm6]	A	T	7.654e^-5	0.781	UPSTREAM CG9519 INTRON Flo2
X	12336171	X_12336171_DEL [dm3] X_12442138_DEL [dm6]	TAGTATGTTACAAAGAATTC...	T	7.666e^-5	0.781	INTRON Pkcdelta
3R	25965356	3R_25965356_SNP [dm3] 3R_30139634_SNP [dm6]	A	G	7.667e^-5	0.781	INTRON AdoR
2L	4305613	2L_4305613_SNP [dm3] 2L_4305613_SNP [dm6]	T	C	7.729e^-5	0.781	UTR_3_PRIME tutl INTRON tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15477633	2R_15477633_DEL [dm3] 2R_19590128_DEL [dm6]	TT	T	7.789e^-5	0.781	INTRON sm
3L	7282799	3L_7282799_SNP [dm3] 3L_7289699_SNP [dm6]	T	G	7.844e^-5	0.781	INTRON unc-13-4A
3L	22839245	3L_22839245_SNP [dm3] 3L_22846145_SNP [dm6]	C	T	7.916e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19399342	X_19399342_SNP [dm3] X_19505309_SNP [dm6]	T	C	7.970e^-5	0.781	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	22539300	3L_22539300_SNP [dm3] 3L_22546200_SNP [dm6]	G	A	8.005e^-5	0.781	INTERGENIC
X	14744343	X_14744343_SNP [dm3] X_14850310_SNP [dm6]	G	A	8.031e^-5	0.781	DOWNSTREAM CG9521 INTRON Flo2
3R	17947127	3R_17947127_SNP [dm3] 3R_22121405_SNP [dm6]	C	G	8.059e^-5	0.781	INTRON CG42390
X	14088719	X_14088719_SNP [dm3] X_14194686_SNP [dm6]	G	A	8.126e^-5	0.781	NON_SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18138453	X_18138453_SNP [dm3] X_18244420_SNP [dm6]	C	G	8.341e^-5	0.781	DOWNSTREAM CR45607 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9793534	3L_9793534_SNP [dm3] 3L_9800434_SNP [dm6]	C	G	8.367e^-5	0.781	UTR_3_PRIME Ilp2 DOWNSTREAM Ilp3 INTRON CG32052
3R	6736381	3R_6736381_SNP [dm3] 3R_10910659_SNP [dm6]	T	C	8.381e^-5	0.781	INTERGENIC
3L	7283447	3L_7283447_INS [dm3] 3L_7290347_INS [dm6]	T	TC	8.519e^-5	0.781	INTRON unc-13-4A
3L	7283450	3L_7283450_SNP [dm3] 3L_7290350_SNP [dm6]	A	C	8.519e^-5	0.781	INTRON unc-13-4A
3L	7283456	3L_7283456_SNP [dm3] 3L_7290356_SNP [dm6]	G	C	8.519e^-5	0.781	INTRON unc-13-4A
3L	7283466	3L_7283466_SNP [dm3] 3L_7290366_SNP [dm6]	T	A	8.519e^-5	0.781	INTRON unc-13-4A
3L	7283484	3L_7283484_SNP [dm3] 3L_7290384_SNP [dm6]	A	C	8.519e^-5	0.781	INTRON unc-13-4A
2R	20098889	2R_20098889_SNP [dm3] 2R_24211366_SNP [dm6]	T	A	8.522e^-5	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	14927186	3L_14927186_SNP [dm3] 3L_14934086_SNP [dm6]	C	T	8.553e^-5	0.781	INTRON DCX-EMAP
X	13259722	X_13259722_SNP [dm3] X_13365689_SNP [dm6]	T	C	8.737e^-5	0.781	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7283453	3L_7283453_SNP [dm3] 3L_7290353_SNP [dm6]	C	A	8.895e^-5	0.781	INTRON unc-13-4A
3L	7283458	3L_7283458_SNP [dm3] 3L_7290358_SNP [dm6]	C	G	8.895e^-5	0.781	INTRON unc-13-4A
3L	7283515	3L_7283515_SNP [dm3] 3L_7290415_SNP [dm6]	A	C	8.895e^-5	0.781	INTRON unc-13-4A
2R	17472391	2R_17472391_SNP [dm3] 2R_21584886_SNP [dm6]	C	A	8.948e^-5	0.781	NON_SYNONYMOUS_CODING CG30222 UTR_3_PRIME CG30222
2R	17472400	2R_17472400_SNP [dm3] 2R_21584895_SNP [dm6]	T	C	8.948e^-5	0.781	SYNONYMOUS_CODING CG30222 UTR_3_PRIME CG30222
X	9929877	X_9929877_SNP [dm3] X_10035844_SNP [dm6]	A	G	8.958e^-5	0.781	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5246175	3L_5246175_SNP [dm3] 3L_5253075_SNP [dm6]	G	C	8.982e^-5	0.781	INTRON shep
3L	11594864	3L_11594864_SNP [dm3] 3L_11601764_SNP [dm6]	T	C	8.990e^-5	0.781	INTRON CG7368
X	8097972	X_8097972_SNP [dm3] X_8203939_SNP [dm6]	G	A	9.104e^-5	0.781	INTRON sdt
2L	5522064	2L_5522064_SNP [dm3] 2L_5522064_SNP [dm6]	A	T	9.157e^-5	0.781	DOWNSTREAM cl INTRON CG7371
3R	22910302	3R_22910302_DEL [dm3] 3R_27084580_DEL [dm6]	TAATTGCACC	T	9.297e^-5	0.781	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad
2R	2024404	2R_2024404_INS [dm3] 2R_6136899_INS [dm6]	A	AA	9.327e^-5	0.781	UPSTREAM CG14589 INTRON EcR
3L	22836321	3L_22836321_SNP [dm3] 3L_22843221_SNP [dm6]	A	T	9.430e^-5	0.781	UPSTREAM tRNA:CR32456 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5722756	2L_5722756_SNP [dm3] 2L_5722756_SNP [dm6]	T	G	9.510e^-5	0.781	NON_SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1991200	2L_1991200_SNP [dm3] 2L_1991200_SNP [dm6]	C	T	9.712e^-5	0.781	DOWNSTREAM Obp22a & 1 other INTERGENIC
3L	7283452	3L_7283452_SNP [dm3] 3L_7290352_SNP [dm6]	G	T	9.816e^-5	0.781	INTRON unc-13-4A
2R	13391110	2R_13391110_SNP [dm3] 2R_17503605_SNP [dm6]	G	A	9.899e^-5	0.781	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
2L	18079776	2L_18079776_SNP [dm3] 2L_18079776_SNP [dm6]	A	C	1.001e^-4	0.781	INTRON Arr1
3R	13240068	3R_13240068_SNP [dm3] 3R_17414346_SNP [dm6]	T	A	1.001e^-4	0.781	DOWNSTREAM CG42821 INTRON CG42822
3R	26099225	3R_26099225_SNP [dm3] 3R_30273503_SNP [dm6]	C	G	1.012e^-4	0.781	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	2060042	2R_2060042_SNP [dm3] 2R_6172537_SNP [dm6]	G	A	1.020e^-4	0.781	UPSTREAM tRNA:K2:42Ad DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs
2R	4262469	2R_4262469_SNP [dm3] 2R_8374964_SNP [dm6]	G	A	1.022e^-4	0.781	INTRON pdm3
3L	12344432	3L_12344432_SNP [dm3] 3L_12351332_SNP [dm6]	A	G	1.022e^-4	0.781	UTR_5_PRIME CrzR
X	16904032	X_16904032_SNP [dm3] X_17009999_SNP [dm6]	C	T	1.024e^-4	0.781	INTRON CG45002
3L	5910770	3L_5910770_SNP [dm3] 3L_5917670_SNP [dm6]	C	A	1.026e^-4	0.781	UPSTREAM CR45167 DOWNSTREAM CG10483 & 1 other INTERGENIC
3L	14102639	3L_14102639_SNP [dm3] 3L_14109539_SNP [dm6]	C	G	1.034e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_zfh1
X	13840408	X_13840408_INS [dm3] X_13946375_INS [dm6]	A	AGAAA	1.040e^-4	0.781	INTRON mamo
3L	7283488	3L_7283488_SNP [dm3] 3L_7290388_SNP [dm6]	G	A	1.044e^-4	0.781	INTRON unc-13-4A
3L	11752019	3L_11752019_SNP [dm3] 3L_11758919_SNP [dm6]	T	G	1.053e^-4	0.781	INTRON CG6024
X	19399201	X_19399201_SNP [dm3] X_19505168_SNP [dm6]	A	G	1.055e^-4	0.781	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	22138457	X_22138457_SNP [dm3] X_22736621_SNP [dm6]	C	G	1.063e^-4	0.781	INTRON CR44997
2L	5726726	2L_5726726_SNP [dm3] 2L_5726726_SNP [dm6]	C	G	1.069e^-4	0.781	UTR_3_PRIME CG14006 DOWNSTREAM CG14006 INTRON CG11030	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22847381	3L_22847381_SNP [dm3] 3L_22854281_SNP [dm6]	A	G	1.072e^-4	0.781	UPSTREAM CG32462 DOWNSTREAM CG32459 & 1 other EXON CR43426	transposable element FlyBase
2L	4767526	2L_4767526_SNP [dm3] 2L_4767526_SNP [dm6]	T	C	1.085e^-4	0.781	INTRON CG15630
3L	8381900	3L_8381900_SNP [dm3] 3L_8388800_SNP [dm6]	G	C	1.088e^-4	0.781	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad
3L	8381971	3L_8381971_SNP [dm3] 3L_8388871_SNP [dm6]	G	A	1.088e^-4	0.781	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8382181	3L_8382181_SNP [dm3] 3L_8389081_SNP [dm6]	T	C	1.088e^-4	0.781	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad
3L	12503572	3L_12503572_SNP [dm3] 3L_12510472_SNP [dm6]	A	C	1.103e^-4	0.781	SYNONYMOUS_CODING sti
3R	6725887	3R_6725887_DEL [dm3] 3R_10900165_DEL [dm6]	TTGGC	AA	1.105e^-4	0.781	INTERGENIC
2R	9888929	2R_9888929_SNP [dm3] 2R_14001424_SNP [dm6]	C	T	1.106e^-4	0.781	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9888966	2R_9888966_SNP [dm3] 2R_14001461_SNP [dm6]	A	T	1.106e^-4	0.781	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10454474	2R_10454474_SNP [dm3] 2R_14566969_SNP [dm6]	A	G	1.111e^-4	0.781	INTRON ttv
2L	10639049	2L_10639049_SNP [dm3] 2L_10639049_SNP [dm6]	C	T	1.115e^-4	0.781	UPSTREAM CG7329 & 1 other EXON CR45351
X	2249372	X_2249372_SNP [dm3] X_2355339_SNP [dm6]	A	G	1.116e^-4	0.781	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2R	6213515	2R_6213515_INS [dm3] 2R_10326010_INS [dm6]	T	TGT	1.126e^-4	0.781	INTRON CG42732
3L	7282284	3L_7282284_SNP [dm3] 3L_7289184_SNP [dm6]	T	C	1.132e^-4	0.781	INTRON unc-13-4A
2R	15472253	2R_15472253_DEL [dm3] 2R_19584748_DEL [dm6]	ATTTGAGAATATA...	A	1.143e^-4	0.781	INTRON sm
X	14748332	X_14748332_DEL [dm3] X_14854299_DEL [dm6]	AGAACTGATAGAACAAAC...	A	1.148e^-4	0.781	DOWNSTREAM CG9519 INTRON Flo2
3R	10595780	3R_10595780_SNP [dm3] 3R_14770058_SNP [dm6]	T	G	1.160e^-4	0.781	INTRON jvl
3L	11928369	3L_11928369_SNP [dm3] 3L_11935269_SNP [dm6]	T	C	1.161e^-4	0.781	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18074670	2R_18074670_SNP [dm3] 2R_22187165_SNP [dm6]	C	A	1.163e^-4	0.781	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14748323	X_14748323_SNP [dm3] X_14854290_SNP [dm6]	G	A	1.170e^-4	0.781	DOWNSTREAM CG9519 INTRON Flo2
3L	7283508	3L_7283508_SNP [dm3] 3L_7290408_SNP [dm6]	A	T	1.182e^-4	0.781	INTRON unc-13-4A
2L	11722222	2L_11722222_SNP [dm3] 2L_11722222_SNP [dm6]	A	T	1.186e^-4	0.781	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad
3L	10369265	3L_10369265_SNP [dm3] 3L_10376165_SNP [dm6]	C	T	1.214e^-4	0.781	INTERGENIC
2L	19295211	2L_19295211_SNP [dm3] 2L_19295211_SNP [dm6]	A	G	1.219e^-4	0.781	INTERGENIC
2R	8185808	2R_8185808_SNP [dm3] 2R_12298303_SNP [dm6]	C	A	1.221e^-4	0.781	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850 & 1 other
2R	8185809	2R_8185809_SNP [dm3] 2R_12298304_SNP [dm6]	T	A	1.221e^-4	0.781	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850 & 1 other
X	20497405	X_20497405_DEL [dm3] X_20626378_DEL [dm6]	AATTGTTATTA...	A	1.229e^-4	0.781	INTERGENIC
X	11704754	X_11704754_SNP [dm3] X_11810721_SNP [dm6]	G	A	1.253e^-4	0.781	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9964048	2R_9964048_SNP [dm3] 2R_14076543_SNP [dm6]	A	G	1.266e^-4	0.781	INTRON Prosap
3R	18564446	3R_18564446_SNP [dm3] 3R_22738724_SNP [dm6]	A	G	1.268e^-4	0.781	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18564461	3R_18564461_SNP [dm3] 3R_22738739_SNP [dm6]	C	T	1.268e^-4	0.781	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3955833	3L_3955833_SNP [dm3] 3L_3955833_SNP [dm6]	T	C	1.274e^-4	0.781	UTR_3_PRIME CG12605
2L	5462422	2L_5462422_SNP [dm3] 2L_5462422_SNP [dm6]	T	A	1.291e^-4	0.781	INTRON mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	18059342	3L_18059342_SNP [dm3] 3L_18066242_SNP [dm6]	C	T	1.293e^-4	0.781	INTERGENIC
X	14966995	X_14966995_SNP [dm3] X_15072962_SNP [dm6]	T	C	1.294e^-4	0.781	NON_SYNONYMOUS_CODING Lsd-2 INTRON Lsd-2
2R	16168199	2R_16168199_SNP [dm3] 2R_20280694_SNP [dm6]	A	C	1.300e^-4	0.781	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3R	15338223	3R_15338223_INS [dm3] 3R_19512501_INS [dm6]	A	AC	1.304e^-4	0.781	INTRON Dys
2R	8178119	2R_8178119_SNP [dm3] 2R_12290614_SNP [dm6]	A	G	1.310e^-4	0.781	UPSTREAM CG42700 INTRON CG42700
3L	12557176	3L_12557176_SNP [dm3] 3L_12564076_SNP [dm6]	T	C	1.318e^-4	0.781	INTRON sowah
3L	10194208	3L_10194208_SNP [dm3] 3L_10201108_SNP [dm6]	T	A	1.322e^-4	0.781	INTRON ect
3L	11822667	3L_11822667_SNP [dm3] 3L_11829567_SNP [dm6]	A	G	1.350e^-4	0.781	SPLICE_SITE_REGION CG7264 INTRON CycA & 1 other
3L	11822670	3L_11822670_SNP [dm3] 3L_11829570_SNP [dm6]	C	G	1.350e^-4	0.781	INTRON CycA & 1 other
3L	11822686	3L_11822686_SNP [dm3] 3L_11829586_SNP [dm6]	G	T	1.350e^-4	0.781	INTRON CycA & 1 other
3L	11822725	3L_11822725_SNP [dm3] 3L_11829625_SNP [dm6]	A	C	1.350e^-4	0.781	SYNONYMOUS_CODING CG7264 INTRON CycA
3L	14762448	3L_14762448_SNP [dm3] 3L_14769348_SNP [dm6]	A	T	1.383e^-4	0.781	UTR_3_PRIME mop UPSTREAM CG17173
3R	15337994	3R_15337994_SNP [dm3] 3R_19512272_SNP [dm6]	G	C	1.383e^-4	0.781	INTRON Dys
3L	421598	3L_421598_SNP [dm3] 3L_421598_SNP [dm6]	T	C	1.383e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_sens
3L	11123871	3L_11123871_SNP [dm3] 3L_11130771_SNP [dm6]	C	A	1.384e^-4	0.781	UPSTREAM nol INTRON CG42575
X	2249375	X_2249375_DEL [dm3] X_2355342_DEL [dm6]	AATT	A	1.398e^-4	0.781	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2L	8961539	2L_8961539_SNP [dm3] 2L_8961539_SNP [dm6]	A	G	1.415e^-4	0.781	SYNONYMOUS_CODING CG9525 UPSTREAM CG32985	TF binding site mE1_TFBS_HSA
2L	14010952	2L_14010952_SNP [dm3] 2L_14010952_SNP [dm6]	T	C	1.421e^-4	0.781	UPSTREAM tRNA:Q:34E INTERGENIC
X	6528322	X_6528322_SNP [dm3] X_6634289_SNP [dm6]	A	T	1.426e^-4	0.781	NON_SYNONYMOUS_CODING CG14443 INTRON pigs
2R	9888840	2R_9888840_SNP [dm3] 2R_14001335_SNP [dm6]	C	A	1.465e^-4	0.781	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24200726	3R_24200726_SNP [dm3] 3R_28375004_SNP [dm6]	G	A	1.482e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1939497	2L_1939497_SNP [dm3] 2L_1939497_SNP [dm6]	C	A	1.502e^-4	0.781	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11106323	3L_11106323_SNP [dm3] 3L_11113223_SNP [dm6]	C	A	1.502e^-4	0.781	DOWNSTREAM fd68A INTRON Sod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	5203960	X_5203960_SNP [dm3] X_5309927_SNP [dm6]	A	G	1.502e^-4	0.781	UPSTREAM Cdk7 DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
3L	18849866	3L_18849866_SNP [dm3] 3L_18856766_SNP [dm6]	C	T	1.510e^-4	0.781	UPSTREAM CR45388 INTERGENIC
3R	6735381	3R_6735381_SNP [dm3] 3R_10909659_SNP [dm6]	T	C	1.513e^-4	0.781	INTERGENIC
X	10385441	X_10385441_SNP [dm3] X_10491408_SNP [dm6]	G	C	1.535e^-4	0.781	INTRON spri
2L	11203841	2L_11203841_SNP [dm3] 2L_11203841_SNP [dm6]	T	A	1.541e^-4	0.781	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11185661	2L_11185661_SNP [dm3] 2L_11185661_SNP [dm6]	G	A	1.560e^-4	0.781	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12514085	3L_12514085_INS [dm3] 3L_12520985_INS [dm6]	C	CCTC	1.578e^-4	0.781	DOWNSTREAM Gcn5 & 1 other INTERGENIC
2R	9888912	2R_9888912_SNP [dm3] 2R_14001407_SNP [dm6]	A	G	1.581e^-4	0.781	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16347770	3R_16347770_SNP [dm3] 3R_20522048_SNP [dm6]	G	A	1.582e^-4	0.781	INTERGENIC
X	20496655	X_20496655_INS [dm3] X_20625628_INS [dm6]	C	CT	1.590e^-4	0.781	INTERGENIC
X	12602468	X_12602468_SNP [dm3] X_12708435_SNP [dm6]	C	T	1.598e^-4	0.781	SYNONYMOUS_CODING CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	16990629	2L_16990629_SNP [dm3] 2L_16990629_SNP [dm6]	A	G	1.609e^-4	0.781	INTRON beat-IIIb
2L	16990636	2L_16990636_SNP [dm3] 2L_16990636_SNP [dm6]	T	A	1.609e^-4	0.781	INTRON beat-IIIb
2R	9728400	2R_9728400_SNP [dm3] 2R_13840895_SNP [dm6]	G	C	1.609e^-4	0.781	NON_SYNONYMOUS_CODING CG6357 DOWNSTREAM Syngr
2R	8181198	2R_8181198_SNP [dm3] 2R_12293693_SNP [dm6]	C	T	1.614e^-4	0.781	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8181355	2R_8181355_DEL [dm3] 2R_12293850_DEL [dm6]	AG	A	1.614e^-4	0.781	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6889681	X_6889681_SNP [dm3] X_6995648_SNP [dm6]	C	T	1.643e^-4	0.781	DOWNSTREAM CR43837 INTRON Inx7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	2638998	2R_2638998_SNP [dm3] 2R_6751493_SNP [dm6]	C	T	1.645e^-4	0.781	UPSTREAM Eb1 INTRON Eb1
X	14748409	X_14748409_SNP [dm3] X_14854376_SNP [dm6]	A	T	1.650e^-4	0.781	UTR_3_PRIME CG9519 INTRON Flo2
2R	17314360	2R_17314360_SNP [dm3] 2R_21426855_SNP [dm6]	A	T	1.651e^-4	0.781	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2907046	X_2907046_SNP [dm3] X_3013013_SNP [dm6]	G	A	1.651e^-4	0.781	INTRON kirre
X	2907051	X_2907051_SNP [dm3] X_3013018_SNP [dm6]	G	A	1.651e^-4	0.781	INTRON kirre
3L	18835836	3L_18835836_SNP [dm3] 3L_18842736_SNP [dm6]	T	C	1.661e^-4	0.781	INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da
X	14743141	X_14743141_SNP [dm3] X_14849108_SNP [dm6]	C	T	1.679e^-4	0.781	UPSTREAM CG9522 INTRON Flo2
3L	6390321	3L_6390321_SNP [dm3] 3L_6397221_SNP [dm6]	T	A	1.692e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8367956	2R_8367956_SNP [dm3] 2R_12480451_SNP [dm6]	G	A	1.696e^-4	0.781	INTRON Dh44-R2
3R	15338097	3R_15338097_SNP [dm3] 3R_19512375_SNP [dm6]	C	A	1.706e^-4	0.781	INTRON Dys
3R	15338101	3R_15338101_SNP [dm3] 3R_19512379_SNP [dm6]	A	T	1.706e^-4	0.781	INTRON Dys
3R	15338117	3R_15338117_SNP [dm3] 3R_19512395_SNP [dm6]	T	G	1.706e^-4	0.781	INTRON Dys
X	12328784	X_12328784_SNP [dm3] X_12434751_SNP [dm6]	C	A	1.708e^-4	0.781	INTRON Pkcdelta
3R	18555623	3R_18555623_SNP [dm3] 3R_22729901_SNP [dm6]	A	C	1.712e^-4	0.781	INTRON CG45049
2R	8186438	2R_8186438_SNP [dm3] 2R_12298933_SNP [dm6]	T	C	1.715e^-4	0.781	SYNONYMOUS_STOP CG8850 UTR_3_PRIME CG42700 DOWNSTREAM CG42700
2L	1939376	2L_1939376_SNP [dm3] 2L_1939376_SNP [dm6]	G	A	1.752e^-4	0.781	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9301143	2L_9301143_SNP [dm3] 2L_9301143_SNP [dm6]	T	C	1.752e^-4	0.781	UTR_3_PRIME Ggamma30A
X	3428788	X_3428788_SNP [dm3] X_3534755_SNP [dm6]	A	T	1.761e^-4	0.781	INTRON CG32791	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12804929	2L_12804929_SNP [dm3] 2L_12804929_SNP [dm6]	C	T	1.761e^-4	0.781	INTERGENIC
3R	15338318	3R_15338318_SNP [dm3] 3R_19512596_SNP [dm6]	C	T	1.840e^-4	0.781	INTRON Dys
2L	4162998	2L_4162998_SNP [dm3] 2L_4162998_SNP [dm6]	T	A	1.840e^-4	0.781	INTERGENIC
3R	19224292	3R_19224292_DEL [dm3] 3R_23398570_DEL [dm6]	AATGCCACTA	A	1.844e^-4	0.781	DOWNSTREAM CR44323 INTERGENIC
3R	26804827	3R_26804827_SNP [dm3] 3R_30979105_SNP [dm6]	G	A	1.847e^-4	0.781	INTRON 5-HT7
3R	26804828	3R_26804828_DEL [dm3] 3R_30979106_DEL [dm6]	CA	C	1.847e^-4	0.781	INTRON 5-HT7
3L	11625440	3L_11625440_SNP [dm3] 3L_11632340_SNP [dm6]	C	T	1.854e^-4	0.781	DOWNSTREAM CR45158 INTRON CG32091
X	5203942	X_5203942_SNP [dm3] X_5309909_SNP [dm6]	G	A	1.854e^-4	0.781	UPSTREAM Cdk7 DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
2R	13410342	2R_13410342_SNP [dm3] 2R_17522837_SNP [dm6]	G	T	1.871e^-4	0.781	INTRON Patronin
2L	20791136	2L_20791136_SNP [dm3] 2L_20791136_SNP [dm6]	G	T	1.893e^-4	0.781	INTRON vari
2R	5518137	2R_5518137_SNP [dm3] 2R_9630632_SNP [dm6]	T	C	1.893e^-4	0.781	INTRON Mmp2
3L	7724963	3L_7724963_SNP [dm3] 3L_7731863_SNP [dm6]	G	T	1.893e^-4	0.781	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo
X	5687954	X_5687954_SNP [dm3] X_5793921_SNP [dm6]	C	A	1.893e^-4	0.781	SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5688107	X_5688107_SNP [dm3] X_5794074_SNP [dm6]	G	A	1.893e^-4	0.781	SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_sens
2L	17529309	2L_17529309_SNP [dm3] 2L_17529309_SNP [dm6]	G	A	1.894e^-4	0.781	UPSTREAM CG15144 DOWNSTREAM CG15145 INTERGENIC
3R	16348074	3R_16348074_SNP [dm3] 3R_20522352_SNP [dm6]	A	T	1.903e^-4	0.781	INTERGENIC
3R	16348113	3R_16348113_SNP [dm3] 3R_20522391_SNP [dm6]	G	A	1.903e^-4	0.781	INTERGENIC
3R	16348156	3R_16348156_SNP [dm3] 3R_20522434_SNP [dm6]	C	A	1.903e^-4	0.781	INTERGENIC
3R	16348198	3R_16348198_SNP [dm3] 3R_20522476_SNP [dm6]	T	C	1.903e^-4	0.781	INTERGENIC
3R	15338294	3R_15338294_SNP [dm3] 3R_19512572_SNP [dm6]	A	C	1.906e^-4	0.781	INTRON Dys
2R	17094276	2R_17094276_SNP [dm3] 2R_21206771_SNP [dm6]	G	C	1.922e^-4	0.781	INTRON CG44245 & 1 other
X	14246155	X_14246155_SNP [dm3] X_14352122_SNP [dm6]	T	C	1.930e^-4	0.781	INTRON dpr8
3L	1460659	3L_1460659_SNP [dm3] 3L_1460659_SNP [dm6]	C	A	1.930e^-4	0.781	DOWNSTREAM CR44842 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18007050	3L_18007050_SNP [dm3] 3L_18013950_SNP [dm6]	C	A	1.931e^-4	0.781	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	17940171	3R_17940171_SNP [dm3] 3R_22114449_SNP [dm6]	C	A	1.931e^-4	0.781	SYNONYMOUS_CODING Ir94a
X	12439349	X_12439349_SNP [dm3] X_12545316_SNP [dm6]	A	G	1.943e^-4	0.781	INTRON CG43921
3L	18338163	3L_18338163_SNP [dm3] 3L_18345063_SNP [dm6]	T	C	1.946e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
X	16147078	X_16147078_SNP [dm3] X_16253045_SNP [dm6]	T	C	1.947e^-4	0.781	DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2L	4767523	2L_4767523_SNP [dm3] 2L_4767523_SNP [dm6]	T	C	1.948e^-4	0.781	INTRON CG15630
2R	8809486	2R_8809486_SNP [dm3] 2R_12921981_SNP [dm6]	C	T	1.965e^-4	0.781	SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	14752160	X_14752160_SNP [dm3] X_14858127_SNP [dm6]	G	C	1.968e^-4	0.781	INTRON Flo2
2R	15448855	2R_15448855_SNP [dm3] 2R_19561350_SNP [dm6]	T	G	1.968e^-4	0.781	INTRON sm
X	14748186	X_14748186_SNP [dm3] X_14854153_SNP [dm6]	G	T	1.970e^-4	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	11931666	3L_11931666_SNP [dm3] 3L_11938566_SNP [dm6]	A	T	1.977e^-4	0.781	INTRON CG44837	TF binding site BDTNP1_TFBS_dl
2R	8287437	2R_8287437_SNP [dm3] 2R_12399932_SNP [dm6]	C	T	1.980e^-4	0.781	DOWNSTREAM CG30048 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	1071495	2R_1071495_SNP [dm3] 2R_5183990_SNP [dm6]	G	A	1.980e^-4	0.781	INTRON Nipped-A	TF binding site mE1_TFBS_zfh1
2L	8977461	2L_8977461_SNP [dm3] 2L_8977461_SNP [dm6]	C	T	1.987e^-4	0.781	DOWNSTREAM CG13101 INTERGENIC
3R	6791097	3R_6791097_SNP [dm3] 3R_10965375_SNP [dm6]	A	G	1.992e^-4	0.781	INTERGENIC
X	14752387	X_14752387_INS [dm3] X_14858354_INS [dm6]	T	TA	2.007e^-4	0.781	INTRON Flo2
2L	2854889	2L_2854889_SNP [dm3] 2L_2854889_SNP [dm6]	G	T	2.009e^-4	0.781	UTR_5_PRIME CG3104 INTRON CG3104
3L	12493776	3L_12493776_SNP [dm3] 3L_12500676_SNP [dm6]	G	C	2.009e^-4	0.781	NON_SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15543773	X_15543773_SNP [dm3] X_15649740_SNP [dm6]	T	C	2.009e^-4	0.781	INTERGENIC
X	14746100	X_14746100_SNP [dm3] X_14852067_SNP [dm6]	C	T	2.030e^-4	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14746316	X_14746316_SNP [dm3] X_14852283_SNP [dm6]	C	T	2.030e^-4	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14747520	X_14747520_SNP [dm3] X_14853487_SNP [dm6]	C	T	2.030e^-4	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748473	X_14748473_SNP [dm3] X_14854440_SNP [dm6]	C	T	2.030e^-4	0.781	NON_SYNONYMOUS_CODING CG9519 INTRON Flo2
X	14748747	X_14748747_SNP [dm3] X_14854714_SNP [dm6]	A	G	2.030e^-4	0.781	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad
2R	8189781	2R_8189781_DEL [dm3] 2R_12302276_DEL [dm6]	GAATCCACGCAGCGG...	G	2.042e^-4	0.781	UPSTREAM CG8850 DOWNSTREAM SIP2 INTERGENIC
2R	9119738	2R_9119738_SNP [dm3] 2R_13232233_SNP [dm6]	T	C	2.047e^-4	0.781	SYNONYMOUS_CODING CG4670 DOWNSTREAM fsd	TF binding site mE1_TFBS_cad
2L	15181028	2L_15181028_SNP [dm3] 2L_15181028_SNP [dm6]	C	A	2.057e^-4	0.781	INTRON CG4168
2L	17898583	2L_17898583_SNP [dm3] 2L_17898583_SNP [dm6]	C	T	2.057e^-4	0.781	INTERGENIC
2L	20790858	2L_20790858_SNP [dm3] 2L_20790858_SNP [dm6]	A	G	2.057e^-4	0.781	INTRON vari
2L	20792023	2L_20792023_SNP [dm3] 2L_20792023_SNP [dm6]	C	A	2.057e^-4	0.781	INTRON vari	TF binding site mE1_TFBS_Trl
2R	19557347	2R_19557347_SNP [dm3] 2R_23669824_SNP [dm6]	C	T	2.057e^-4	0.781	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19557351	2R_19557351_SNP [dm3] 2R_23669828_SNP [dm6]	T	G	2.057e^-4	0.781	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5518274	2R_5518274_SNP [dm3] 2R_9630769_SNP [dm6]	C	G	2.057e^-4	0.781	INTRON Mmp2
3L	11186850	3L_11186850_SNP [dm3] 3L_11193750_SNP [dm6]	C	T	2.057e^-4	0.781	INTRON GlcAT-P
3L	11351583	3L_11351583_SNP [dm3] 3L_11358483_SNP [dm6]	C	A	2.057e^-4	0.781	INTERGENIC
3R	15338037	3R_15338037_SNP [dm3] 3R_19512315_SNP [dm6]	A	C	2.057e^-4	0.781	INTRON Dys
3R	3447033	3R_3447033_DEL [dm3] 3R_7621311_DEL [dm6]	CC	C	2.075e^-4	0.781	INTRON CG34127
2R	8176053	2R_8176053_SNP [dm3] 2R_12288548_SNP [dm6]	G	T	2.075e^-4	0.781	INTRON CG42700
3R	17797781	3R_17797781_SNP [dm3] 3R_21972059_SNP [dm6]	A	G	2.081e^-4	0.781	UPSTREAM Eip93F INTRON Eip93F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	10328503	3R_10328503_SNP [dm3] 3R_14502781_SNP [dm6]	A	G	2.092e^-4	0.781	INTRON CR44177
2L	18078855	2L_18078855_SNP [dm3] 2L_18078855_SNP [dm6]	C	A	2.094e^-4	0.781	INTRON Arr1	TF binding site mE1_TFBS_chinmo
2L	18078879	2L_18078879_SNP [dm3] 2L_18078879_SNP [dm6]	A	G	2.094e^-4	0.781	INTRON Arr1	TF binding site mE1_TFBS_chinmo
2L	18078882	2L_18078882_SNP [dm3] 2L_18078882_SNP [dm6]	T	C	2.094e^-4	0.781	INTRON Arr1	TF binding site mE1_TFBS_chinmo
3R	26673849	3R_26673849_SNP [dm3] 3R_30848127_SNP [dm6]	A	G	2.104e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs
3L	19917475	3L_19917475_SNP [dm3] 3L_19924375_SNP [dm6]	A	G	2.126e^-4	0.781	UTR_3_PRIME CG7770 UPSTREAM Su_z_12 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4534033	3L_4534033_SNP [dm3] 3L_4534033_SNP [dm6]	C	A	2.142e^-4	0.781	INTRON CG11353
2R	14835543	2R_14835543_SNP [dm3] 2R_18948038_SNP [dm6]	G	A	2.143e^-4	0.781	INTRON sano
2L	15092305	2L_15092305_SNP [dm3] 2L_15092305_SNP [dm6]	A	C	2.151e^-4	0.781	SYNONYMOUS_CODING CG15270
2L	3959278	2L_3959278_SNP [dm3] 2L_3959278_SNP [dm6]	G	T	2.170e^-4	0.781	INTRON fred
X	14752159	X_14752159_SNP [dm3] X_14858126_SNP [dm6]	G	T	2.171e^-4	0.781	INTRON Flo2
3L	11350537	3L_11350537_SNP [dm3] 3L_11357437_SNP [dm6]	T	A	2.178e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	25937248	3R_25937248_SNP [dm3] 3R_30111526_SNP [dm6]	A	T	2.178e^-4	0.781	INTRON sima
2R	8447629	2R_8447629_SNP [dm3] 2R_12560124_SNP [dm6]	G	A	2.197e^-4	0.781	INTRON fra
2R	8182051	2R_8182051_SNP [dm3] 2R_12294546_SNP [dm6]	A	G	2.204e^-4	0.781	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17938192	3L_17938192_SNP [dm3] 3L_17945092_SNP [dm6]	C	A	2.205e^-4	0.781	INTRON CG43174
2L	18066714	2L_18066714_SNP [dm3] 2L_18066714_SNP [dm6]	C	T	2.215e^-4	0.781	INTRON rdo
X	8470660	X_8470660_SNP [dm3] X_8576627_SNP [dm6]	G	A	2.226e^-4	0.781	INTRON CG12065
3L	2690491	3L_2690491_SNP [dm3] 3L_2690491_SNP [dm6]	T	C	2.227e^-4	0.781	INTRON Fife
3R	6849806	3R_6849806_SNP [dm3] 3R_11024084_SNP [dm6]	T	G	2.229e^-4	0.781	INTRON CG34114
2R	6185006	2R_6185006_SNP [dm3] 2R_10297501_SNP [dm6]	G	A	2.235e^-4	0.781	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12074623	2L_12074623_SNP [dm3] 2L_12074623_SNP [dm6]	C	G	2.252e^-4	0.781	INTERGENIC
3L	4064242	3L_4064242_SNP [dm3] 3L_4064242_SNP [dm6]	T	A	2.256e^-4	0.781	UTR_3_PRIME dib & 1 other	TF binding site mE1_TFBS_cad
3L	10194155	3L_10194155_SNP [dm3] 3L_10201055_SNP [dm6]	G	C	2.284e^-4	0.781	INTRON ect
2L	14090819	2L_14090819_SNP [dm3] 2L_14090819_SNP [dm6]	C	T	2.290e^-4	0.781	UTR_3_PRIME nAChRalpha5
X	13259685	X_13259685_SNP [dm3] X_13365652_SNP [dm6]	C	T	2.291e^-4	0.781	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10454875	2R_10454875_SNP [dm3] 2R_14567370_SNP [dm6]	T	C	2.293e^-4	0.781	INTRON ttv
2L	8168956	2L_8168956_SNP [dm3] 2L_8168956_SNP [dm6]	T	C	2.303e^-4	0.781	INTRON Piezo
3L	4412923	3L_4412923_SNP [dm3] 3L_4412923_SNP [dm6]	G	C	2.304e^-4	0.781	INTRON DOR
2L	16497934	2L_16497934_SNP [dm3] 2L_16497934_SNP [dm6]	T	G	2.314e^-4	0.781	INTRON Tpr2
3L	10140104	3L_10140104_INS [dm3] 3L_10147004_INS [dm6]	C	CCC	2.321e^-4	0.781	DOWNSTREAM dpr10 INTERGENIC
3R	10172151	3R_10172151_SNP [dm3] 3R_14346429_SNP [dm6]	C	G	2.321e^-4	0.781	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11082510	2R_11082510_SNP [dm3] 2R_15195005_SNP [dm6]	T	G	2.328e^-4	0.781	UPSTREAM CG43829 INTERGENIC
3R	18918337	3R_18918337_SNP [dm3] 3R_23092615_SNP [dm6]	A	T	2.333e^-4	0.781	NON_SYNONYMOUS_CODING CG6726 UTR_5_PRIME CG17110 UPSTREAM CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3789537	2L_3789537_SNP [dm3] 2L_3789537_SNP [dm6]	C	T	2.337e^-4	0.781	UPSTREAM CG3921 INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1456057	3L_1456057_SNP [dm3] 3L_1456057_SNP [dm6]	G	A	2.340e^-4	0.781	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	8327377	3L_8327377_SNP [dm3] 3L_8334277_SNP [dm6]	G	A	2.344e^-4	0.781	INTERGENIC
X	20497291	X_20497291_SNP [dm3] X_20626264_SNP [dm6]	C	T	2.344e^-4	0.781	INTERGENIC
X	20497298	X_20497298_SNP [dm3] X_20626271_SNP [dm6]	C	G	2.344e^-4	0.781	INTERGENIC
X	20497336	X_20497336_SNP [dm3] X_20626309_SNP [dm6]	T	C	2.344e^-4	0.781	INTERGENIC
3L	7283492	3L_7283492_SNP [dm3] 3L_7290392_SNP [dm6]	T	A	2.347e^-4	0.781	INTRON unc-13-4A
3L	7283502	3L_7283502_MNP [dm3] 3L_7290402_MNP [dm6]	TAT	GTC	2.347e^-4	0.781	INTRON unc-13-4A
X	14748005	X_14748005_SNP [dm3] X_14853972_SNP [dm6]	C	T	2.364e^-4	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	11536453	3L_11536453_SNP [dm3] 3L_11543353_SNP [dm6]	C	G	2.369e^-4	0.781	INTRON Mob2
3L	11536456	3L_11536456_SNP [dm3] 3L_11543356_SNP [dm6]	T	A	2.369e^-4	0.781	INTRON Mob2
2L	5462501	2L_5462501_SNP [dm3] 2L_5462501_SNP [dm6]	T	C	2.376e^-4	0.781	INTRON mid	TF binding site BDTNP1_TFBS_dl
2L	6902704	2L_6902704_SNP [dm3] 2L_6902704_SNP [dm6]	T	C	2.376e^-4	0.781	DOWNSTREAM mir-932 INTRON Nlg2
2L	6902712	2L_6902712_SNP [dm3] 2L_6902712_SNP [dm6]	C	A	2.376e^-4	0.781	DOWNSTREAM mir-932 INTRON Nlg2
3R	3291316	3R_3291316_SNP [dm3] 3R_7465594_SNP [dm6]	A	G	2.391e^-4	0.781	INTERGENIC
X	17170009	X_17170009_SNP [dm3] X_17275976_SNP [dm6]	T	A	2.393e^-4	0.781	INTRON f
3R	6722197	3R_6722197_INS [dm3] 3R_10896475_INS [dm6]	G	GG	2.397e^-4	0.781	DOWNSTREAM CR45577 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3L	11930917	3L_11930917_SNP [dm3] 3L_11937817_SNP [dm6]	G	C	2.408e^-4	0.781	NON_SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16256085	3R_16256085_SNP [dm3] 3R_20430363_SNP [dm6]	T	G	2.408e^-4	0.781	INTRON Gfrl
3L	11351594	3L_11351594_SNP [dm3] 3L_11358494_SNP [dm6]	T	A	2.409e^-4	0.781	INTERGENIC
3L	5398609	3L_5398609_SNP [dm3] 3L_5405509_SNP [dm6]	T	C	2.412e^-4	0.781	INTERGENIC
X	14748404	X_14748404_SNP [dm3] X_14854371_SNP [dm6]	G	C	2.414e^-4	0.781	UTR_3_PRIME CG9519 INTRON Flo2
X	14750719	X_14750719_SNP [dm3] X_14856686_SNP [dm6]	T	C	2.414e^-4	0.781	UPSTREAM CG9519 INTRON Flo2
2R	19138541	2R_19138541_SNP [dm3] 2R_23251018_SNP [dm6]	G	A	2.414e^-4	0.781	INTERGENIC
3R	8182220	3R_8182220_SNP [dm3] 3R_12356498_SNP [dm6]	T	C	2.417e^-4	0.781	UPSTREAM MBD-R2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	4279057	2L_4279057_SNP [dm3] 2L_4279057_SNP [dm6]	T	C	2.431e^-4	0.781	INTRON Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4279061	2L_4279061_SNP [dm3] 2L_4279061_SNP [dm6]	A	T	2.431e^-4	0.781	INTRON Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14927136	3L_14927136_INS [dm3] 3L_14934036_INS [dm6]	A	AA	2.432e^-4	0.781	INTRON DCX-EMAP
3R	16255933	3R_16255933_SNP [dm3] 3R_20430211_SNP [dm6]	T	G	2.434e^-4	0.781	INTRON Gfrl
3R	7384900	3R_7384900_SNP [dm3] 3R_11559178_SNP [dm6]	C	T	2.445e^-4	0.781	SYNONYMOUS_CODING CG10898 DOWNSTREAM fabp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	11685574	2L_11685574_SNP [dm3] 2L_11685574_SNP [dm6]	G	A	2.449e^-4	0.781	INTERGENIC
X	14749221	X_14749221_SNP [dm3] X_14855188_SNP [dm6]	C	T	2.449e^-4	0.781	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14749239	X_14749239_SNP [dm3] X_14855206_SNP [dm6]	A	G	2.449e^-4	0.781	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15338192	3R_15338192_SNP [dm3] 3R_19512470_SNP [dm6]	T	A	2.467e^-4	0.781	INTRON Dys
2L	16380574	2L_16380574_INS [dm3] 2L_16380574_INS [dm6]	A	ATGGTCA	2.467e^-4	0.781	INTERGENIC
3L	14037571	3L_14037571_SNP [dm3] 3L_14044471_SNP [dm6]	T	C	2.469e^-4	0.781	SYNONYMOUS_CODING blue DOWNSTREAM Hsc70Cb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12069108	3L_12069108_INS [dm3] 3L_12076008_INS [dm6]	G	GCAGTTG	2.478e^-4	0.781	INTRON Sema-5c
3L	11931607	3L_11931607_SNP [dm3] 3L_11938507_SNP [dm6]	C	A	2.479e^-4	0.781	SPLICE_SITE_REGION CG44837 UTR_5_PRIME CG44837	TF binding site mE1_TFBS_cad
3L	21201276	3L_21201276_SNP [dm3] 3L_21208176_SNP [dm6]	C	A	2.500e^-4	0.781	UTR_3_PRIME CG10510 DOWNSTREAM CG10512	TF binding site mE1_TFBS_cad
3L	11360118	3L_11360118_SNP [dm3] 3L_11367018_SNP [dm6]	C	T	2.515e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18835922	3L_18835922_SNP [dm3] 3L_18842822_SNP [dm6]	T	C	2.515e^-4	0.781	DOWNSTREAM CR32027 INTRON Indy	TF binding site BDTNP1_TFBS_da
X	3905101	X_3905101_SNP [dm3] X_4011068_SNP [dm6]	A	T	2.515e^-4	0.781	INTERGENIC
2L	2527168	2L_2527168_SNP [dm3] 2L_2527168_SNP [dm6]	C	T	2.524e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6299955	3L_6299955_SNP [dm3] 3L_6306855_SNP [dm6]	A	T	2.526e^-4	0.781	DOWNSTREAM CR45113 INTERGENIC
X	10385458	X_10385458_SNP [dm3] X_10491425_SNP [dm6]	C	G	2.529e^-4	0.781	INTRON spri
2R	9888934	2R_9888934_SNP [dm3] 2R_14001429_SNP [dm6]	T	C	2.536e^-4	0.781	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17951754	3L_17951754_SNP [dm3] 3L_17958654_SNP [dm6]	A	G	2.542e^-4	0.781	INTRON Eip75B
3L	7926049	3L_7926049_INS [dm3] 3L_7932949_INS [dm6]	T	TT	2.547e^-4	0.781	INTRON syd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13540411	2L_13540411_SNP [dm3] 2L_13540411_SNP [dm6]	C	T	2.560e^-4	0.781	UPSTREAM CG16852 INTRON B4
2L	13540414	2L_13540414_SNP [dm3] 2L_13540414_SNP [dm6]	A	G	2.560e^-4	0.781	UPSTREAM CG16852 INTRON B4
2L	16990628	2L_16990628_SNP [dm3] 2L_16990628_SNP [dm6]	A	G	2.566e^-4	0.781	INTRON beat-IIIb
2R	14170768	2R_14170768_SNP [dm3] 2R_18283263_SNP [dm6]	A	T	2.582e^-4	0.781	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3953437	2L_3953437_SNP [dm3] 2L_3953437_SNP [dm6]	C	T	2.588e^-4	0.781	INTRON fred
3L	7282906	3L_7282906_SNP [dm3] 3L_7289806_SNP [dm6]	T	C	2.591e^-4	0.781	INTRON unc-13-4A
3R	18917914	3R_18917914_SNP [dm3] 3R_23092192_SNP [dm6]	T	C	2.604e^-4	0.781	SYNONYMOUS_CODING CG6726 UTR_5_PRIME CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad
3R	18917935	3R_18917935_SNP [dm3] 3R_23092213_SNP [dm6]	A	G	2.604e^-4	0.781	SYNONYMOUS_CODING CG6726 UTR_5_PRIME CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad
2R	8190945	2R_8190945_SNP [dm3] 2R_12303440_SNP [dm6]	C	T	2.622e^-4	0.781	UTR_3_PRIME SIP2 INTRON SIP2
2R	8193923	2R_8193923_SNP [dm3] 2R_12306418_SNP [dm6]	G	A	2.622e^-4	0.781	UPSTREAM CG17739 & 1 other INTERGENIC
2R	17311459	2R_17311459_SNP [dm3] 2R_21423954_SNP [dm6]	G	C	2.640e^-4	0.781	INTRON Sdc
3R	10919499	3R_10919499_DEL [dm3] 3R_15093777_DEL [dm6]	ATGTA	A	2.653e^-4	0.781	INTRON CG6966	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	12666917	3L_12666917_SNP [dm3] 3L_12673817_SNP [dm6]	A	G	2.653e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666919	3L_12666919_SNP [dm3] 3L_12673819_SNP [dm6]	T	G	2.653e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666920	3L_12666920_SNP [dm3] 3L_12673820_SNP [dm6]	G	A	2.653e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11722207	2L_11722207_SNP [dm3] 2L_11722207_SNP [dm6]	C	A	2.678e^-4	0.781	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad
2L	11722212	2L_11722212_SNP [dm3] 2L_11722212_SNP [dm6]	T	C	2.678e^-4	0.781	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad
2L	11722221	2L_11722221_SNP [dm3] 2L_11722221_SNP [dm6]	G	A	2.678e^-4	0.781	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad
3R	11702385	3R_11702385_SNP [dm3] 3R_15876663_SNP [dm6]	A	G	2.690e^-4	0.781	UPSTREAM CG31183 INTERGENIC
3L	11598825	3L_11598825_DEL [dm3] 3L_11605725_DEL [dm6]	AA	A	2.701e^-4	0.781	UTR_3_PRIME CG6091 DOWNSTREAM CG6091 & 1 other
2R	9561345	2R_9561345_SNP [dm3] 2R_13673840_SNP [dm6]	A	G	2.701e^-4	0.781	DOWNSTREAM CR45032 INTRON fas	TF binding site mE1_TFBS_chinmo
2L	4988154	2L_4988154_SNP [dm3] 2L_4988154_SNP [dm6]	T	A	2.703e^-4	0.781	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25807325	3R_25807325_SNP [dm3] 3R_29981603_SNP [dm6]	T	C	2.706e^-4	0.781	INTERGENIC
3R	25807338	3R_25807338_SNP [dm3] 3R_29981616_SNP [dm6]	G	C	2.706e^-4	0.781	INTERGENIC
3R	6733147	3R_6733147_SNP [dm3] 3R_10907425_SNP [dm6]	G	A	2.709e^-4	0.781	INTERGENIC
3L	18024845	3L_18024845_SNP [dm3] 3L_18031745_SNP [dm6]	G	C	2.711e^-4	0.781	INTRON Eip75B
3L	18024846	3L_18024846_SNP [dm3] 3L_18031746_SNP [dm6]	G	C	2.711e^-4	0.781	INTRON Eip75B
2L	8333363	2L_8333363_SNP [dm3] 2L_8333363_SNP [dm6]	G	A	2.724e^-4	0.781	DOWNSTREAM CG14275 INTERGENIC
3L	11927875	3L_11927875_SNP [dm3] 3L_11934775_SNP [dm6]	A	G	2.727e^-4	0.781	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	11927980	3L_11927980_SNP [dm3] 3L_11934880_SNP [dm6]	C	A	2.727e^-4	0.781	INTRON CG44837 & 1 other
3L	11928024	3L_11928024_SNP [dm3] 3L_11934924_SNP [dm6]	A	C	2.727e^-4	0.781	INTRON CG44837 & 1 other
3L	11928552	3L_11928552_SNP [dm3] 3L_11935452_SNP [dm6]	C	T	2.727e^-4	0.781	SYNONYMOUS_CODING byn UTR_3_PRIME byn INTRON CG44837	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11929046	3L_11929046_SNP [dm3] 3L_11935946_SNP [dm6]	T	C	2.727e^-4	0.781	DOWNSTREAM byn INTRON CG44837
3L	11929411	3L_11929411_SNP [dm3] 3L_11936311_SNP [dm6]	A	T	2.727e^-4	0.781	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
3L	11929442	3L_11929442_SNP [dm3] 3L_11936342_SNP [dm6]	T	C	2.727e^-4	0.781	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
3L	11929450	3L_11929450_SNP [dm3] 3L_11936350_SNP [dm6]	A	T	2.727e^-4	0.781	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
3L	11929890	3L_11929890_SNP [dm3] 3L_11936790_SNP [dm6]	A	T	2.727e^-4	0.781	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11931492	3L_11931492_SNP [dm3] 3L_11938392_SNP [dm6]	T	G	2.727e^-4	0.781	UTR_5_PRIME CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11933584	3L_11933584_SNP [dm3] 3L_11940484_SNP [dm6]	T	G	2.727e^-4	0.781	INTERGENIC
3L	11933819	3L_11933819_SNP [dm3] 3L_11940719_SNP [dm6]	G	A	2.727e^-4	0.781	INTERGENIC
3L	11933954	3L_11933954_SNP [dm3] 3L_11940854_SNP [dm6]	A	C	2.727e^-4	0.781	INTERGENIC
3L	11934298	3L_11934298_SNP [dm3] 3L_11941198_SNP [dm6]	T	C	2.727e^-4	0.781	UPSTREAM Rpt4R INTERGENIC
3L	11934704	3L_11934704_SNP [dm3] 3L_11941604_SNP [dm6]	C	A	2.727e^-4	0.781	UPSTREAM Rpt4R INTERGENIC
3L	11934799	3L_11934799_SNP [dm3] 3L_11941699_SNP [dm6]	A	T	2.727e^-4	0.781	UPSTREAM Rpt4R INTERGENIC
2R	8186583	2R_8186583_SNP [dm3] 2R_12299078_SNP [dm6]	G	A	2.738e^-4	0.781	UTR_3_PRIME CG42700 DOWNSTREAM CG42700 INTRON CG8850
2L	18352830	2L_18352830_DEL [dm3] 2L_18352830_DEL [dm6]	ACGCC	TT	2.750e^-4	0.781	INTRON Fas3
3L	18102801	3L_18102801_SNP [dm3] 3L_18109701_SNP [dm6]	T	C	2.757e^-4	0.781	UPSTREAM mus304 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	15019414	2L_15019414_DEL [dm3] 2L_15019414_DEL [dm6]	TCCAT	T	2.762e^-4	0.781	INTRON GABA-B-R1
2L	18079767	2L_18079767_SNP [dm3] 2L_18079767_SNP [dm6]	T	C	2.779e^-4	0.781	INTRON Arr1
3R	22801529	3R_22801529_SNP [dm3] 3R_26975807_SNP [dm6]	C	A	2.783e^-4	0.781	SYNONYMOUS_CODING CG5521
2R	16168200	2R_16168200_SNP [dm3] 2R_20280695_SNP [dm6]	A	T	2.787e^-4	0.781	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
X	20497349	X_20497349_SNP [dm3] X_20626322_SNP [dm6]	A	T	2.798e^-4	0.781	INTERGENIC
3L	1078685	3L_1078685_SNP [dm3] 3L_1078685_SNP [dm6]	A	C	2.803e^-4	0.781	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4474489	X_4474489_INS [dm3] X_4580456_INS [dm6]	A	ACATA	2.806e^-4	0.781	INTRON CR32773
3R	19222468	3R_19222468_SNP [dm3] 3R_23396746_SNP [dm6]	G	A	2.809e^-4	0.781	INTERGENIC
2R	7603527	2R_7603527_SNP [dm3] 2R_11716022_SNP [dm6]	C	A	2.821e^-4	0.781	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	8181982	2R_8181982_DEL [dm3] 2R_12294477_DEL [dm6]	CCCAATATTT	C	2.830e^-4	0.781	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4165743	2L_4165743_SNP [dm3] 2L_4165743_SNP [dm6]	T	C	2.840e^-4	0.781	NON_SYNONYMOUS_CODING Or24a
2R	14179180	2R_14179180_INS [dm3] 2R_18291675_INS [dm6]	T	TCT	2.846e^-4	0.781	UPSTREAM CG14502 INTRON CG14502 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14957973	2R_14957973_SNP [dm3] 2R_19070468_SNP [dm6]	A	G	2.871e^-4	0.781	INTRON 5-HT1A
3R	16388687	3R_16388687_SNP [dm3] 3R_20562965_SNP [dm6]	C	T	2.883e^-4	0.781	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20621043	X_20621043_SNP [dm3] X_20750016_SNP [dm6]	T	C	2.899e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	15760960	3R_15760960_SNP [dm3] 3R_19935238_SNP [dm6]	T	C	2.899e^-4	0.781	UPSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12333881	3L_12333881_SNP [dm3] 3L_12340781_SNP [dm6]	G	C	2.901e^-4	0.781	INTRON CrzR
2R	8181351	2R_8181351_INS [dm3] 2R_12293846_INS [dm6]	T	TAAA	2.920e^-4	0.781	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12246122	3L_12246122_SNP [dm3] 3L_12253022_SNP [dm6]	T	C	2.936e^-4	0.781	INTRON app
3R	18913559	3R_18913559_SNP [dm3] 3R_23087837_SNP [dm6]	A	T	2.939e^-4	0.781	INTRON CG13830	TF binding site mE1_TFBS_cad
3L	12217127	3L_12217127_SNP [dm3] 3L_12224027_SNP [dm6]	T	C	2.952e^-4	0.781	INTRON app
2L	20246038	2L_20246038_INS [dm3] 2L_20246038_INS [dm6]	A	TTATAAACTTATT...	2.957e^-4	0.781	INTERGENIC
2L	20246098	2L_20246098_SNP [dm3] 2L_20246098_SNP [dm6]	A	T	2.957e^-4	0.781	INTERGENIC
2R	8782364	2R_8782364_SNP [dm3] 2R_12894859_SNP [dm6]	C	A	2.957e^-4	0.781	INTRON vg	TF binding site BDTNP1_TFBS_dl
3L	11092534	3L_11092534_SNP [dm3] 3L_11099434_SNP [dm6]	T	C	2.957e^-4	0.781	SYNONYMOUS_CODING APP-BP1 DOWNSTREAM pncr011:3L
3L	11092542	3L_11092542_SNP [dm3] 3L_11099442_SNP [dm6]	T	G	2.957e^-4	0.781	SYNONYMOUS_CODING APP-BP1 DOWNSTREAM pncr011:3L
3L	11092554	3L_11092554_SNP [dm3] 3L_11099454_SNP [dm6]	C	T	2.957e^-4	0.781	SYNONYMOUS_CODING APP-BP1 DOWNSTREAM pncr011:3L
3L	15676195	3L_15676195_SNP [dm3] 3L_15683095_SNP [dm6]	G	C	2.957e^-4	0.781	NON_SYNONYMOUS_CODING CG7579 UPSTREAM pgant8	TF binding site mE1_TFBS_sens
3L	15679513	3L_15679513_SNP [dm3] 3L_15686413_SNP [dm6]	A	T	2.957e^-4	0.781	UTR_3_PRIME pgant8 & 1 other
3R	16467032	3R_16467032_SNP [dm3] 3R_20641310_SNP [dm6]	G	A	2.957e^-4	0.781	SYNONYMOUS_CODING Lrrk
X	5327621	X_5327621_SNP [dm3] X_5433588_SNP [dm6]	G	A	2.957e^-4	0.781	EXON CR44471	TF binding site mE1_TFBS_Trl
X	5327710	X_5327710_SNP [dm3] X_5433677_SNP [dm6]	A	C	2.957e^-4	0.781	INTRON CR44471	TF binding site mE1_TFBS_Trl
X	5327714	X_5327714_SNP [dm3] X_5433681_SNP [dm6]	G	A	2.957e^-4	0.781	INTRON CR44471	TF binding site mE1_TFBS_Trl
3R	25463402	3R_25463402_INS [dm3] 3R_29637680_INS [dm6]	G	GTACTT	2.968e^-4	0.781	INTRON Dop1R2
3R	25463407	3R_25463407_SNP [dm3] 3R_29637685_SNP [dm6]	G	A	2.968e^-4	0.781	INTRON Dop1R2
3L	11937643	3L_11937643_SNP [dm3] 3L_11944543_SNP [dm6]	T	A	2.972e^-4	0.781	NON_SYNONYMOUS_CODING CG5883
3L	11938277	3L_11938277_SNP [dm3] 3L_11945177_SNP [dm6]	A	C	2.972e^-4	0.781	UPSTREAM CG5883 DOWNSTREAM mir-285 INTERGENIC
3L	9540446	3L_9540446_SNP [dm3] 3L_9547346_SNP [dm6]	C	T	2.981e^-4	0.781	UTR_5_PRIME CG42673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16752705	3L_16752705_SNP [dm3] 3L_16759605_SNP [dm6]	G	T	2.997e^-4	0.781	INTERGENIC
3L	7283510	3L_7283510_SNP [dm3] 3L_7290410_SNP [dm6]	A	C	2.998e^-4	0.781	INTRON unc-13-4A
X	2565616	X_2565616_SNP [dm3] X_2671583_SNP [dm6]	A	C	3.036e^-4	0.781	INTRON sgg
2R	6339283	2R_6339283_SNP [dm3] 2R_10451778_SNP [dm6]	G	A	3.047e^-4	0.781	INTRON Galphao & 1 other
2R	8977418	2R_8977418_SNP [dm3] 2R_13089913_SNP [dm6]	T	C	3.049e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5362251	3L_5362251_SNP [dm3] 3L_5369151_SNP [dm6]	G	T	3.073e^-4	0.781	UPSTREAM CR44515 INTERGENIC
3R	26077303	3R_26077303_SNP [dm3] 3R_30251581_SNP [dm6]	T	A	3.073e^-4	0.781	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	3905087	X_3905087_SNP [dm3] X_4011054_SNP [dm6]	T	A	3.075e^-4	0.781	INTERGENIC
X	3905096	X_3905096_SNP [dm3] X_4011063_SNP [dm6]	T	C	3.075e^-4	0.781	INTERGENIC
X	3905107	X_3905107_SNP [dm3] X_4011074_SNP [dm6]	A	T	3.075e^-4	0.781	INTERGENIC
2R	16907159	2R_16907159_SNP [dm3] 2R_21019654_SNP [dm6]	T	G	3.078e^-4	0.781	INTRON RIC-3
3R	19222519	3R_19222519_SNP [dm3] 3R_23396797_SNP [dm6]	T	C	3.109e^-4	0.781	INTERGENIC
X	3905079	X_3905079_SNP [dm3] X_4011046_SNP [dm6]	A	C	3.110e^-4	0.781	INTERGENIC
3R	19454315	3R_19454315_SNP [dm3] 3R_23628593_SNP [dm6]	C	T	3.114e^-4	0.781	INTRON CG31145
3L	2690504	3L_2690504_SNP [dm3] 3L_2690504_SNP [dm6]	T	G	3.130e^-4	0.781	INTRON Fife
2R	12414436	2R_12414436_SNP [dm3] 2R_16526931_SNP [dm6]	A	G	3.136e^-4	0.781	INTRON Sema-2a
3L	12349774	3L_12349774_DEL [dm3] 3L_12356674_DEL [dm6]	TT	C	3.141e^-4	0.781	INTERGENIC
X	8208710	X_8208710_SNP [dm3] X_8314677_SNP [dm6]	A	C	3.146e^-4	0.781	INTRON nAChRalpha3
3L	9512810	3L_9512810_SNP [dm3] 3L_9519710_SNP [dm6]	T	C	3.147e^-4	0.781	INTRON CG33700
2L	11679763	2L_11679763_SNP [dm3] 2L_11679763_SNP [dm6]	T	G	3.150e^-4	0.781	INTERGENIC
3R	17940312	3R_17940312_SNP [dm3] 3R_22114590_SNP [dm6]	A	C	3.152e^-4	0.781	SYNONYMOUS_CODING Ir94a DOWNSTREAM Ir94b
3R	18918124	3R_18918124_SNP [dm3] 3R_23092402_SNP [dm6]	C	T	3.154e^-4	0.781	SYNONYMOUS_CODING CG6726 START_GAINED CG17110 UTR_5_PRIME CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2192818	3L_2192818_SNP [dm3] 3L_2192818_SNP [dm6]	C	G	3.155e^-4	0.781	UPSTREAM CG5707 INTERGENIC
3L	7283008	3L_7283008_SNP [dm3] 3L_7289908_SNP [dm6]	T	C	3.160e^-4	0.781	INTRON unc-13-4A
2L	17395600	2L_17395600_SNP [dm3] 2L_17395600_SNP [dm6]	A	C	3.164e^-4	0.781	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
2R	9411289	2R_9411289_SNP [dm3] 2R_13523784_SNP [dm6]	G	A	3.165e^-4	0.781	DOWNSTREAM CG13331 INTRON Vmat
2R	13580905	2R_13580905_SNP [dm3] 2R_17693400_SNP [dm6]	A	T	3.192e^-4	0.781	INTRON swi2
3L	12666984	3L_12666984_SNP [dm3] 3L_12673884_SNP [dm6]	G	T	3.192e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12667016	3L_12667016_SNP [dm3] 3L_12673916_SNP [dm6]	T	C	3.192e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	15678604	3L_15678604_SNP [dm3] 3L_15685504_SNP [dm6]	A	G	3.192e^-4	0.781	NON_SYNONYMOUS_CODING pgant8 DOWNSTREAM CG34452	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15679158	3L_15679158_SNP [dm3] 3L_15686058_SNP [dm6]	G	T	3.192e^-4	0.781	NON_SYNONYMOUS_CODING pgant8 DOWNSTREAM CG34452
3L	18256615	3L_18256615_SNP [dm3] 3L_18263515_SNP [dm6]	A	G	3.192e^-4	0.781	INTERGENIC
X	4562500	X_4562500_SNP [dm3] X_4668467_SNP [dm6]	C	T	3.192e^-4	0.781	SYNONYMOUS_CODING rap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19750258	3R_19750258_SNP [dm3] 3R_23924536_SNP [dm6]	G	T	3.218e^-4	0.781	UTR_5_PRIME Ndc1 DOWNSTREAM CG31141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19750261	3R_19750261_SNP [dm3] 3R_23924539_SNP [dm6]	C	T	3.218e^-4	0.781	UTR_5_PRIME Ndc1 DOWNSTREAM CG31141	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4798043	X_4798043_SNP [dm3] X_4904010_SNP [dm6]	T	C	3.249e^-4	0.781	SYNONYMOUS_CODING CG42594
2R	9824417	2R_9824417_SNP [dm3] 2R_13936912_SNP [dm6]	A	C	3.253e^-4	0.781	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17940176	3R_17940176_SNP [dm3] 3R_22114454_SNP [dm6]	T	G	3.266e^-4	0.781	NON_SYNONYMOUS_CODING Ir94a
3R	15338227	3R_15338227_DEL [dm3] 3R_19512505_DEL [dm6]	CATGAATG	C	3.274e^-4	0.781	INTRON Dys
3R	7355095	3R_7355095_SNP [dm3] 3R_11529373_SNP [dm6]	C	T	3.274e^-4	0.781	INTERGENIC
2R	14957982	2R_14957982_SNP [dm3] 2R_19070477_SNP [dm6]	G	A	3.281e^-4	0.781	INTRON 5-HT1A
3R	13364442	3R_13364442_SNP [dm3] 3R_17538720_SNP [dm6]	C	T	3.321e^-4	0.781	SYNONYMOUS_CODING l_3_07882
3R	13364463	3R_13364463_SNP [dm3] 3R_17538741_SNP [dm6]	C	T	3.321e^-4	0.781	SYNONYMOUS_CODING l_3_07882
2R	8191138	2R_8191138_SNP [dm3] 2R_12303633_SNP [dm6]	T	C	3.322e^-4	0.781	SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2
3R	19531173	3R_19531173_SNP [dm3] 3R_23705451_SNP [dm6]	A	G	3.327e^-4	0.781	SYNONYMOUS_CODING CG31414 DOWNSTREAM CG31413 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14743362	X_14743362_SNP [dm3] X_14849329_SNP [dm6]	A	C	3.331e^-4	0.781	UPSTREAM CG9522 INTRON Flo2
2R	13547940	2R_13547940_SNP [dm3] 2R_17660435_SNP [dm6]	T	G	3.351e^-4	0.781	INTRON CCHa1-R
X	14537149	X_14537149_SNP [dm3] X_14643116_SNP [dm6]	A	T	3.354e^-4	0.781	INTRON NetA
3R	18184962	3R_18184962_SNP [dm3] 3R_22359240_SNP [dm6]	C	G	3.371e^-4	0.781	INTRON Sar1
3L	11244085	3L_11244085_SNP [dm3] 3L_11250985_SNP [dm6]	A	G	3.382e^-4	0.781	UPSTREAM CR44716 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	4746701	2L_4746701_SNP [dm3] 2L_4746701_SNP [dm6]	G	T	3.386e^-4	0.781	INTRON CG15630
2R	8185317	2R_8185317_SNP [dm3] 2R_12297812_SNP [dm6]	A	G	3.392e^-4	0.781	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
3R	8176776	3R_8176776_SNP [dm3] 3R_12351054_SNP [dm6]	G	A	3.395e^-4	0.781	SYNONYMOUS_CODING CG10041 UPSTREAM CG10038	TF binding site BDTNP1_TFBS_dl
X	3905103	X_3905103_SNP [dm3] X_4011070_SNP [dm6]	C	T	3.395e^-4	0.781	INTERGENIC
X	3905104	X_3905104_SNP [dm3] X_4011071_SNP [dm6]	A	T	3.395e^-4	0.781	INTERGENIC
X	4572217	X_4572217_INS [dm3] X_4678184_INS [dm6]	G	GG	3.407e^-4	0.781	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4669791	2L_4669791_SNP [dm3] 2L_4669791_SNP [dm6]	C	A	3.421e^-4	0.781	INTERGENIC
2R	13391090	2R_13391090_SNP [dm3] 2R_17503585_SNP [dm6]	C	A	3.433e^-4	0.781	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
2L	4669784	2L_4669784_SNP [dm3] 2L_4669784_SNP [dm6]	A	C	3.433e^-4	0.781	INTERGENIC
2L	4733779	2L_4733779_SNP [dm3] 2L_4733779_SNP [dm6]	G	A	3.433e^-4	0.781	SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630
2R	1292989	2R_1292989_SNP [dm3] 2R_5405484_SNP [dm6]	G	T	3.433e^-4	0.781	INTERGENIC	transposable element FlyBase
2R	1293056	2R_1293056_SNP [dm3] 2R_5405551_SNP [dm6]	G	A	3.433e^-4	0.781	INTERGENIC	transposable element FlyBase
3R	744643	3R_744643_SNP [dm3] 3R_4918921_SNP [dm6]	C	T	3.438e^-4	0.781	INTRON Cdep
X	5688083	X_5688083_SNP [dm3] X_5794050_SNP [dm6]	G	A	3.443e^-4	0.781	SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_sens
2L	6471488	2L_6471488_SNP [dm3] 2L_6471488_SNP [dm6]	C	T	3.447e^-4	0.781	SYNONYMOUS_CODING mmy	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15674093	3L_15674093_SNP [dm3] 3L_15680993_SNP [dm6]	T	C	3.452e^-4	0.781	SYNONYMOUS_CODING CG7304 DOWNSTREAM CG7579
2R	18349089	2R_18349089_SNP [dm3] 2R_22461584_SNP [dm6]	C	A	3.461e^-4	0.781	INTRON CG10384
3R	19596166	3R_19596166_SNP [dm3] 3R_23770444_SNP [dm6]	G	A	3.463e^-4	0.781	SYNONYMOUS_CODING tst
X	11899164	X_11899164_DEL [dm3] X_12005131_DEL [dm6]	TT	T	3.480e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA
X	11899425	X_11899425_SNP [dm3] X_12005392_SNP [dm6]	T	A	3.480e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA
X	11899465	X_11899465_SNP [dm3] X_12005432_SNP [dm6]	A	T	3.480e^-4	0.781	INTERGENIC
3L	6934637	3L_6934637_SNP [dm3] 3L_6941537_SNP [dm6]	T	C	3.481e^-4	0.781	INTERGENIC
X	12328827	X_12328827_SNP [dm3] X_12434794_SNP [dm6]	G	T	3.489e^-4	0.781	INTRON Pkcdelta
3R	19571072	3R_19571072_SNP [dm3] 3R_23745350_SNP [dm6]	A	C	3.501e^-4	0.781	INTRON Hmgcr
3R	19571073	3R_19571073_SNP [dm3] 3R_23745351_SNP [dm6]	A	C	3.501e^-4	0.781	INTRON Hmgcr
3R	19571075	3R_19571075_DEL [dm3] 3R_23745353_DEL [dm6]	CTA	C	3.501e^-4	0.781	INTRON Hmgcr
3L	18540983	3L_18540983_SNP [dm3] 3L_18547883_SNP [dm6]	C	T	3.506e^-4	0.781	INTERGENIC
X	14749593	X_14749593_SNP [dm3] X_14855560_SNP [dm6]	A	G	3.516e^-4	0.781	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14749650	X_14749650_SNP [dm3] X_14855617_SNP [dm6]	C	T	3.516e^-4	0.781	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14750860	X_14750860_SNP [dm3] X_14856827_SNP [dm6]	A	G	3.516e^-4	0.781	UPSTREAM CG9519 INTRON Flo2
X	14748458	X_14748458_SNP [dm3] X_14854425_SNP [dm6]	T	A	3.519e^-4	0.781	UTR_3_PRIME CG9519 INTRON Flo2
X	14748945	X_14748945_SNP [dm3] X_14854912_SNP [dm6]	A	T	3.519e^-4	0.781	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad
X	14749512	X_14749512_SNP [dm3] X_14855479_SNP [dm6]	C	T	3.519e^-4	0.781	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11148755	3L_11148755_SNP [dm3] 3L_11155655_SNP [dm6]	A	G	3.541e^-4	0.781	INTRON CG32082
2L	18353146	2L_18353146_SNP [dm3] 2L_18353146_SNP [dm6]	T	A	3.555e^-4	0.781	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
2L	16990646	2L_16990646_SNP [dm3] 2L_16990646_SNP [dm6]	T	C	3.563e^-4	0.781	INTRON beat-IIIb
X	20497338	X_20497338_SNP [dm3] X_20626311_SNP [dm6]	A	T	3.567e^-4	0.781	INTERGENIC
2L	19272390	2L_19272390_DEL [dm3] 2L_19272390_DEL [dm6]	TGTCTGGAGT	T	3.585e^-4	0.781	EXON CR44190
3L	12932903	3L_12932903_SNP [dm3] 3L_12939803_SNP [dm6]	T	G	3.586e^-4	0.781	INTERGENIC
2L	4726265	2L_4726265_SNP [dm3] 2L_4726265_SNP [dm6]	A	T	3.605e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	4764957	2L_4764957_SNP [dm3] 2L_4764957_SNP [dm6]	T	C	3.605e^-4	0.781	INTRON CG15630
2L	3831138	2L_3831138_SNP [dm3] 2L_3831138_SNP [dm6]	T	A	3.611e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	559101	3R_559101_SNP [dm3] 3R_4733379_SNP [dm6]	A	C	3.619e^-4	0.781	DOWNSTREAM tacc INTERGENIC
2L	6850528	2L_6850528_SNP [dm3] 2L_6850528_SNP [dm6]	A	G	3.619e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6850538	2L_6850538_SNP [dm3] 2L_6850538_SNP [dm6]	G	C	3.619e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14749236	X_14749236_SNP [dm3] X_14855203_SNP [dm6]	C	T	3.629e^-4	0.781	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13239980	3R_13239980_SNP [dm3] 3R_17414258_SNP [dm6]	A	G	3.633e^-4	0.781	NON_SYNONYMOUS_CODING CG42822 DOWNSTREAM CG42821
3R	25456605	3R_25456605_SNP [dm3] 3R_29630883_SNP [dm6]	T	A	3.641e^-4	0.781	UTR_3_PRIME Dop1R2
3R	20377526	3R_20377526_SNP [dm3] 3R_24551804_SNP [dm6]	T	C	3.651e^-4	0.781	SYNONYMOUS_CODING Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25463427	3R_25463427_SNP [dm3] 3R_29637705_SNP [dm6]	G	A	3.652e^-4	0.781	INTRON Dop1R2
2R	9379933	2R_9379933_SNP [dm3] 2R_13492428_SNP [dm6]	T	A	3.656e^-4	0.781	INTRON bbc
3R	26470513	3R_26470513_SNP [dm3] 3R_30644791_SNP [dm6]	T	G	3.665e^-4	0.781	SYNONYMOUS_CODING CG31013
2R	14957988	2R_14957988_SNP [dm3] 2R_19070483_SNP [dm6]	C	T	3.666e^-4	0.781	INTRON 5-HT1A
X	21901458	X_21901458_SNP [dm3] X_22499622_SNP [dm6]	A	C	3.666e^-4	0.781	DOWNSTREAM l_1_G0196 INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18031236	2L_18031236_SNP [dm3] 2L_18031236_SNP [dm6]	A	C	3.689e^-4	0.781	INTRON rdo
3L	11937662	3L_11937662_SNP [dm3] 3L_11944562_SNP [dm6]	G	A	3.692e^-4	0.781	SYNONYMOUS_CODING CG5883
2L	18051777	2L_18051777_SNP [dm3] 2L_18051777_SNP [dm6]	G	T	3.697e^-4	0.781	INTRON rdo
2L	18070999	2L_18070999_SNP [dm3] 2L_18070999_SNP [dm6]	A	T	3.697e^-4	0.781	DOWNSTREAM rdo INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4137717	X_4137717_SNP [dm3] X_4243684_SNP [dm6]	A	C	3.709e^-4	0.781	UPSTREAM Femcoat DOWNSTREAM Muc4B INTERGENIC
3R	6028732	3R_6028732_INS [dm3] 3R_10203010_INS [dm6]	A	ATCA	3.726e^-4	0.781	DOWNSTREAM Timp INTRON Syn	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	6028749	3R_6028749_SNP [dm3] 3R_10203027_SNP [dm6]	G	C	3.726e^-4	0.781	DOWNSTREAM Timp INTRON Syn	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6333423	2R_6333423_INS [dm3] 2R_10445918_INS [dm6]	T	TC	3.729e^-4	0.781	INTRON Galphao
3R	816457	3R_816457_SNP [dm3] 3R_4990735_SNP [dm6]	A	T	3.730e^-4	0.781	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
3L	18029156	3L_18029156_SNP [dm3] 3L_18036056_SNP [dm6]	T	C	3.735e^-4	0.781	INTRON Eip75B
X	11917086	X_11917086_SNP [dm3] X_12023053_SNP [dm6]	A	T	3.765e^-4	0.781	UTR_3_PRIME Usp7 DOWNSTREAM Usp7 & 1 other
3R	19206640	3R_19206640_SNP [dm3] 3R_23380918_SNP [dm6]	G	C	3.767e^-4	0.781	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
3L	11351609	3L_11351609_SNP [dm3] 3L_11358509_SNP [dm6]	A	T	3.781e^-4	0.781	INTERGENIC
3R	3750941	3R_3750941_SNP [dm3] 3R_7925219_SNP [dm6]	C	T	3.789e^-4	0.781	UTR_3_PRIME dsx DOWNSTREAM lds
X	13127814	X_13127814_INS [dm3] X_13233781_INS [dm6]	A	ACATA	3.794e^-4	0.781	INTRON mew	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9540447	3L_9540447_INS [dm3] 3L_9547347_INS [dm6]	T	TCG	3.795e^-4	0.781	UTR_5_PRIME CG42673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19574514	X_19574514_SNP [dm3] X_19680481_SNP [dm6]	T	A	3.799e^-4	0.781	INTRON dome	regulatory region REDfly_CRMs
2L	9194994	2L_9194994_SNP [dm3] 2L_9194994_SNP [dm6]	C	A	3.816e^-4	0.781	INTRON tai
2L	7210677	2L_7210677_SNP [dm3] 2L_7210677_SNP [dm6]	A	G	3.841e^-4	0.781	INTRON CG13784
X	16958445	X_16958445_SNP [dm3] X_17064412_SNP [dm6]	A	C	3.842e^-4	0.781	INTRON CG45002
3L	11477090	3L_11477090_SNP [dm3] 3L_11483990_SNP [dm6]	G	C	3.845e^-4	0.781	INTERGENIC
3R	14818533	3R_14818533_SNP [dm3] 3R_18992811_SNP [dm6]	G	T	3.845e^-4	0.781	INTRON gukh	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	19547112	3R_19547112_SNP [dm3] 3R_23721390_SNP [dm6]	C	A	3.845e^-4	0.781	NON_SYNONYMOUS_CODING CG10232	TF binding site mE1_TFBS_HSA
X	14748009	X_14748009_SNP [dm3] X_14853976_SNP [dm6]	T	A	3.846e^-4	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3R	6723169	3R_6723169_SNP [dm3] 3R_10897447_SNP [dm6]	T	A	3.860e^-4	0.781	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
2R	17744101	2R_17744101_SNP [dm3] 2R_21856596_SNP [dm6]	A	T	3.864e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	8910883	2L_8910883_SNP [dm3] 2L_8910883_SNP [dm6]	A	T	3.874e^-4	0.781	INTRON CG34398
2R	8183657	2R_8183657_SNP [dm3] 2R_12296152_SNP [dm6]	C	A	3.880e^-4	0.781	DOWNSTREAM CR45271 INTRON CG42700
3L	1094154	3L_1094154_SNP [dm3] 3L_1094154_SNP [dm6]	T	C	3.886e^-4	0.781	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3903541	3R_3903541_SNP [dm3] 3R_8077819_SNP [dm6]	A	T	3.890e^-4	0.781	INTRON mAChR-B	TF binding site mE1_TFBS_cad
3L	11388852	3L_11388852_SNP [dm3] 3L_11395752_SNP [dm6]	G	A	3.911e^-4	0.781	DOWNSTREAM CG11726 INTERGENIC
3L	7356071	3L_7356071_SNP [dm3] 3L_7362971_SNP [dm6]	C	T	3.917e^-4	0.781	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7356134	3L_7356134_SNP [dm3] 3L_7363034_SNP [dm6]	C	T	3.917e^-4	0.781	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo
2R	8190897	2R_8190897_SNP [dm3] 2R_12303392_SNP [dm6]	C	T	3.923e^-4	0.781	INTRON SIP2
X	12769179	X_12769179_SNP [dm3] X_12875146_SNP [dm6]	G	A	3.929e^-4	0.781	INTRON Pde9
3R	17637050	3R_17637050_SNP [dm3] 3R_21811328_SNP [dm6]	C	A	3.960e^-4	0.781	INTRON CASK
2L	16629200	2L_16629200_SNP [dm3] 2L_16629200_SNP [dm6]	A	T	3.963e^-4	0.781	UPSTREAM CR44151 INTRON CG42389
3L	14331829	3L_14331829_SNP [dm3] 3L_14338729_SNP [dm6]	A	C	3.969e^-4	0.781	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15677588	3L_15677588_SNP [dm3] 3L_15684488_SNP [dm6]	T	C	3.982e^-4	0.781	INTRON pgant8
3L	15677591	3L_15677591_SNP [dm3] 3L_15684491_SNP [dm6]	T	C	3.982e^-4	0.781	INTRON pgant8
3L	15677592	3L_15677592_SNP [dm3] 3L_15684492_SNP [dm6]	A	T	3.982e^-4	0.781	INTRON pgant8
3R	6723118	3R_6723118_SNP [dm3] 3R_10897396_SNP [dm6]	A	C	3.992e^-4	0.781	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
2R	1229109	2R_1229109_INS [dm3] 2R_5341604_INS [dm6]	T	TTTTATCTTAAACATAAGTG...	3.992e^-4	0.781	UPSTREAM CG10465 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	14748861	X_14748861_SNP [dm3] X_14854828_SNP [dm6]	T	C	4.011e^-4	0.781	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad
2L	7301051	2L_7301051_SNP [dm3] 2L_7301051_SNP [dm6]	T	C	4.013e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9282082	3L_9282082_SNP [dm3] 3L_9288982_SNP [dm6]	G	A	4.014e^-4	0.781	DOWNSTREAM GluRIB INTERGENIC
3L	9282086	3L_9282086_SNP [dm3] 3L_9288986_SNP [dm6]	G	A	4.014e^-4	0.781	DOWNSTREAM GluRIB INTERGENIC
2L	4670111	2L_4670111_SNP [dm3] 2L_4670111_SNP [dm6]	T	C	4.022e^-4	0.781	INTERGENIC
3L	10135550	3L_10135550_SNP [dm3] 3L_10142450_SNP [dm6]	C	A	4.028e^-4	0.781	INTERGENIC
2L	17395651	2L_17395651_SNP [dm3] 2L_17395651_SNP [dm6]	G	A	4.038e^-4	0.781	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
3L	12277874	3L_12277874_SNP [dm3] 3L_12284774_SNP [dm6]	G	T	4.042e^-4	0.781	INTERGENIC
X	5483513	X_5483513_DEL [dm3] X_5589480_DEL [dm6]	TCAAGGGGGTT...	T	4.042e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4165739	2L_4165739_SNP [dm3] 2L_4165739_SNP [dm6]	T	C	4.043e^-4	0.781	SYNONYMOUS_CODING Or24a
3R	3575858	3R_3575858_DEL [dm3] 3R_7750136_DEL [dm6]	TCT	T	4.049e^-4	0.781	UPSTREAM pyd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19707342	3R_19707342_SNP [dm3] 3R_23881620_SNP [dm6]	A	T	4.062e^-4	0.781	INTRON Pli
3R	20415354	3R_20415354_SNP [dm3] 3R_24589632_SNP [dm6]	C	T	4.062e^-4	0.781	INTRON mld	TF binding site mE1_TFBS_HSA
3R	25131909	3R_25131909_SNP [dm3] 3R_29306187_SNP [dm6]	T	A	4.062e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11475442	3L_11475442_SNP [dm3] 3L_11482342_SNP [dm6]	T	G	4.069e^-4	0.781	INTERGENIC
3L	9512298	3L_9512298_SNP [dm3] 3L_9519198_SNP [dm6]	G	C	4.077e^-4	0.781	INTRON CG33700
X	9378917	X_9378917_SNP [dm3] X_9484884_SNP [dm6]	A	C	4.089e^-4	0.781	INTRON mgl
2L	6932215	2L_6932215_SNP [dm3] 2L_6932215_SNP [dm6]	C	T	4.104e^-4	0.781	START_GAINED CG43232 UTR_5_PRIME CG43232 DOWNSTREAM CG18304 & 1 other
X	14748570	X_14748570_SNP [dm3] X_14854537_SNP [dm6]	T	G	4.116e^-4	0.781	SYNONYMOUS_CODING CG9519 INTRON Flo2
3R	13654401	3R_13654401_INS [dm3] 3R_17828679_INS [dm6]	G	GC	4.122e^-4	0.781	INTRON tinc
2L	6020366	2L_6020366_INS [dm3] 2L_6020366_INS [dm6]	A	AG	4.130e^-4	0.781	UPSTREAM H2.0 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18330547	2L_18330547_SNP [dm3] 2L_18330547_SNP [dm6]	A	G	4.133e^-4	0.781	INTRON Fas3
3R	19543391	3R_19543391_SNP [dm3] 3R_23717669_SNP [dm6]	C	G	4.134e^-4	0.781	SYNONYMOUS_CODING nau	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9197002	2L_9197002_SNP [dm3] 2L_9197002_SNP [dm6]	T	A	4.170e^-4	0.781	INTRON tai
2L	11190011	2L_11190011_SNP [dm3] 2L_11190011_SNP [dm6]	T	A	4.182e^-4	0.781	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15154020	3R_15154020_SNP [dm3] 3R_19328298_SNP [dm6]	A	G	4.182e^-4	0.781	UPSTREAM CR44175 INTERGENIC
3L	12584604	3L_12584604_INS [dm3] 3L_12591504_INS [dm6]	A	ATTTTTTTTTTAG...	4.185e^-4	0.781	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26251997	3R_26251997_SNP [dm3] 3R_30426275_SNP [dm6]	T	C	4.186e^-4	0.781	SYNONYMOUS_CODING CG2218	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15334367	3R_15334367_SNP [dm3] 3R_19508645_SNP [dm6]	T	A	4.190e^-4	0.781	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25930338	3R_25930338_SNP [dm3] 3R_30104616_SNP [dm6]	C	T	4.191e^-4	0.781	SYNONYMOUS_CODING sima START_GAINED sima UTR_5_PRIME sima INTRON sima
3L	11102771	3L_11102771_SNP [dm3] 3L_11109671_SNP [dm6]	G	T	4.192e^-4	0.781	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22059378	2L_22059378_SNP [dm3] 2L_22059378_SNP [dm6]	T	C	4.207e^-4	0.781	INTERGENIC
2L	6344972	2L_6344972_SNP [dm3] 2L_6344972_SNP [dm6]	A	G	4.208e^-4	0.781	INTRON Cpr	TF binding site mE1_TFBS_sens
2L	6344973	2L_6344973_SNP [dm3] 2L_6344973_SNP [dm6]	C	T	4.208e^-4	0.781	INTRON Cpr	TF binding site mE1_TFBS_sens
3L	7087435	3L_7087435_SNP [dm3] 3L_7094335_SNP [dm6]	T	C	4.209e^-4	0.781	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	19049137	3L_19049137_SNP [dm3] 3L_19056037_SNP [dm6]	A	T	4.215e^-4	0.781	INTERGENIC
3L	19049139	3L_19049139_INS [dm3] 3L_19056039_INS [dm6]	A	ATCGTAG	4.215e^-4	0.781	INTERGENIC
3L	19049145	3L_19049145_SNP [dm3] 3L_19056045_SNP [dm6]	A	T	4.215e^-4	0.781	INTERGENIC
3L	19049149	3L_19049149_SNP [dm3] 3L_19056049_SNP [dm6]	A	T	4.215e^-4	0.781	INTERGENIC
3L	19049157	3L_19049157_SNP [dm3] 3L_19056057_SNP [dm6]	T	A	4.215e^-4	0.781	INTERGENIC
3L	19049170	3L_19049170_SNP [dm3] 3L_19056070_SNP [dm6]	G	A	4.215e^-4	0.781	INTERGENIC
3L	19049175	3L_19049175_SNP [dm3] 3L_19056075_SNP [dm6]	C	T	4.215e^-4	0.781	INTERGENIC
3L	18000797	3L_18000797_SNP [dm3] 3L_18007697_SNP [dm6]	C	T	4.216e^-4	0.781	INTRON Eip75B
3L	18006995	3L_18006995_SNP [dm3] 3L_18013895_SNP [dm6]	G	T	4.218e^-4	0.781	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10915855	3R_10915855_SNP [dm3] 3R_15090133_SNP [dm6]	G	C	4.223e^-4	0.781	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16364249	2L_16364249_SNP [dm3] 2L_16364249_SNP [dm6]	T	C	4.224e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs
2L	16364257	2L_16364257_SNP [dm3] 2L_16364257_SNP [dm6]	G	C	4.224e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs
2L	18027540	2L_18027540_SNP [dm3] 2L_18027540_SNP [dm6]	G	A	4.234e^-4	0.781	INTRON rdo
3L	13467012	3L_13467012_SNP [dm3] 3L_13473912_SNP [dm6]	A	G	4.239e^-4	0.781	INTRON CG10089
X	3905119	X_3905119_SNP [dm3] X_4011086_SNP [dm6]	G	A	4.243e^-4	0.781	INTERGENIC
X	3905123	X_3905123_SNP [dm3] X_4011090_SNP [dm6]	G	A	4.243e^-4	0.781	INTERGENIC
2L	17645227	2L_17645227_SNP [dm3] 2L_17645227_SNP [dm6]	A	G	4.251e^-4	0.781	UPSTREAM CR45699 INTERGENIC
2L	8084986	2L_8084986_SNP [dm3] 2L_8084986_SNP [dm6]	T	C	4.254e^-4	0.781	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	8816309	3L_8816309_SNP [dm3] 3L_8823209_SNP [dm6]	C	T	4.260e^-4	0.781	INTERGENIC
2L	4743745	2L_4743745_SNP [dm3] 2L_4743745_SNP [dm6]	T	C	4.264e^-4	0.781	INTRON CG15630
X	2907648	X_2907648_MNP [dm3] X_3013615_MNP [dm6]	CAT	GCA	4.264e^-4	0.781	INTRON kirre
2L	13540416	2L_13540416_SNP [dm3] 2L_13540416_SNP [dm6]	A	T	4.266e^-4	0.781	UPSTREAM CG16852 INTRON B4
X	14743374	X_14743374_SNP [dm3] X_14849341_SNP [dm6]	T	A	4.267e^-4	0.781	UPSTREAM CG9522 INTRON Flo2
X	14745737	X_14745737_SNP [dm3] X_14851704_SNP [dm6]	C	T	4.275e^-4	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2
X	14745809	X_14745809_SNP [dm3] X_14851776_SNP [dm6]	T	C	4.275e^-4	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_sens
X	18107275	X_18107275_SNP [dm3] X_18213242_SNP [dm6]	C	T	4.275e^-4	0.781	SYNONYMOUS_CODING CG33639	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10580254	3R_10580254_SNP [dm3] 3R_14754532_SNP [dm6]	T	A	4.281e^-4	0.781	UPSTREAM CG7362 INTRON jvl
2L	4472297	2L_4472297_SNP [dm3] 2L_4472297_SNP [dm6]	G	A	4.282e^-4	0.781	INTRON ine
2L	18343559	2L_18343559_SNP [dm3] 2L_18343559_SNP [dm6]	A	T	4.305e^-4	0.781	INTRON Fas3
3R	27476539	3R_27476539_SNP [dm3] 3R_31650817_SNP [dm6]	C	T	4.309e^-4	0.781	INTRON kek6
3L	2156295	3L_2156295_SNP [dm3] 3L_2156295_SNP [dm6]	A	T	4.335e^-4	0.781	INTRON CG15822
2L	4165790	2L_4165790_SNP [dm3] 2L_4165790_SNP [dm6]	G	T	4.344e^-4	0.781	SYNONYMOUS_CODING Or24a
3R	3291560	3R_3291560_SNP [dm3] 3R_7465838_SNP [dm6]	T	A	4.346e^-4	0.781	INTERGENIC
2R	9778080	2R_9778080_SNP [dm3] 2R_13890575_SNP [dm6]	G	T	4.346e^-4	0.781	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_sens
2R	9778107	2R_9778107_SNP [dm3] 2R_13890602_SNP [dm6]	G	A	4.346e^-4	0.781	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_sens
3L	17996575	3L_17996575_SNP [dm3] 3L_18003475_SNP [dm6]	A	G	4.349e^-4	0.781	UPSTREAM snoRNA:Me28S-A30 INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
2R	9662489	2R_9662489_SNP [dm3] 2R_13774984_SNP [dm6]	G	A	4.359e^-4	0.781	SYNONYMOUS_CODING Cpr50Ca
2R	18593248	2R_18593248_SNP [dm3] 2R_22705743_SNP [dm6]	C	A	4.360e^-4	0.781	DOWNSTREAM Obp58c & 1 other INTERGENIC
X	22053689	X_22053689_SNP [dm3] X_22651853_SNP [dm6]	A	T	4.363e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18003215	3L_18003215_SNP [dm3] 3L_18010115_SNP [dm6]	A	T	4.363e^-4	0.781	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7283399	3L_7283399_SNP [dm3] 3L_7290299_SNP [dm6]	T	A	4.383e^-4	0.781	INTRON unc-13-4A
3L	7283407	3L_7283407_SNP [dm3] 3L_7290307_SNP [dm6]	T	A	4.383e^-4	0.781	INTRON unc-13-4A
3L	7283408	3L_7283408_SNP [dm3] 3L_7290308_SNP [dm6]	A	T	4.383e^-4	0.781	INTRON unc-13-4A
3L	7283410	3L_7283410_SNP [dm3] 3L_7290310_SNP [dm6]	C	T	4.383e^-4	0.781	INTRON unc-13-4A
3L	7283415	3L_7283415_SNP [dm3] 3L_7290315_SNP [dm6]	T	A	4.383e^-4	0.781	INTRON unc-13-4A
3L	7283436	3L_7283436_SNP [dm3] 3L_7290336_SNP [dm6]	A	C	4.383e^-4	0.781	INTRON unc-13-4A
3L	7283437	3L_7283437_SNP [dm3] 3L_7290337_SNP [dm6]	A	C	4.383e^-4	0.781	INTRON unc-13-4A
3L	7283439	3L_7283439_DEL [dm3] 3L_7290339_DEL [dm6]	TAAA	T	4.383e^-4	0.781	INTRON unc-13-4A
2L	4761651	2L_4761651_SNP [dm3] 2L_4761651_SNP [dm6]	C	T	4.392e^-4	0.781	INTRON CG15630
2L	4761695	2L_4761695_SNP [dm3] 2L_4761695_SNP [dm6]	A	T	4.392e^-4	0.781	INTRON CG15630
2L	6473957	2L_6473957_SNP [dm3] 2L_6473957_SNP [dm6]	G	T	4.396e^-4	0.781	UPSTREAM mmy DOWNSTREAM CG9536 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7356107	3L_7356107_SNP [dm3] 3L_7363007_SNP [dm6]	G	A	4.401e^-4	0.781	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8172771	3R_8172771_SNP [dm3] 3R_12347049_SNP [dm6]	C	A	4.403e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	12769235	X_12769235_SNP [dm3] X_12875202_SNP [dm6]	G	A	4.407e^-4	0.781	INTRON Pde9
2R	4201565	2R_4201565_SNP [dm3] 2R_8314060_SNP [dm6]	C	T	4.412e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13488166	3R_13488166_SNP [dm3] 3R_17662444_SNP [dm6]	A	G	4.431e^-4	0.781	NON_SYNONYMOUS_CODING CG14322
3R	24611293	3R_24611293_SNP [dm3] 3R_28785571_SNP [dm6]	G	T	4.451e^-4	0.781	INTERGENIC
3L	17951750	3L_17951750_SNP [dm3] 3L_17958650_SNP [dm6]	C	T	4.452e^-4	0.781	INTRON Eip75B
X	8699199	X_8699199_INS [dm3] X_8805166_INS [dm6]	T	TT	4.453e^-4	0.781	UTR_5_PRIME Lim1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13319447	3R_13319447_SNP [dm3] 3R_17493725_SNP [dm6]	G	C	4.458e^-4	0.781	INTRON Dscam3
3R	13319450	3R_13319450_SNP [dm3] 3R_17493728_SNP [dm6]	T	A	4.458e^-4	0.781	INTRON Dscam3
3R	12152865	3R_12152865_SNP [dm3] 3R_16327143_SNP [dm6]	A	C	4.458e^-4	0.781	SYNONYMOUS_CODING CG17929 UPSTREAM CG17930 INTRON Sulf1
3L	12164916	3L_12164916_SNP [dm3] 3L_12171816_SNP [dm6]	G	A	4.461e^-4	0.781	INTRON Rh7
2R	9888819	2R_9888819_SNP [dm3] 2R_14001314_SNP [dm6]	C	T	4.469e^-4	0.781	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8183545	2R_8183545_SNP [dm3] 2R_12296040_SNP [dm6]	T	A	4.478e^-4	0.781	DOWNSTREAM CR45271 INTRON CG42700
3L	6298251	3L_6298251_SNP [dm3] 3L_6305151_SNP [dm6]	T	A	4.478e^-4	0.781	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
3L	7283444	3L_7283444_SNP [dm3] 3L_7290344_SNP [dm6]	T	C	4.484e^-4	0.781	INTRON unc-13-4A
2L	4761647	2L_4761647_SNP [dm3] 2L_4761647_SNP [dm6]	A	T	4.493e^-4	0.781	INTRON CG15630
X	15968042	X_15968042_SNP [dm3] X_16074009_SNP [dm6]	C	G	4.495e^-4	0.781	UPSTREAM Nipsnap DOWNSTREAM Tob INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	5379622	X_5379622_SNP [dm3] X_5485589_SNP [dm6]	C	A	4.506e^-4	0.781	INTRON SPR
3L	11758547	3L_11758547_SNP [dm3] 3L_11765447_SNP [dm6]	C	A	4.514e^-4	0.781	INTRON CG6024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	15333470	3R_15333470_SNP [dm3] 3R_19507748_SNP [dm6]	C	G	4.514e^-4	0.781	INTRON Dys
2R	9963808	2R_9963808_DEL [dm3] 2R_14076303_DEL [dm6]	ATAAATA	A	4.519e^-4	0.781	INTRON Prosap
X	4572013	X_4572013_SNP [dm3] X_4677980_SNP [dm6]	A	T	4.520e^-4	0.781	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	4572021	X_4572021_SNP [dm3] X_4677988_SNP [dm6]	C	T	4.520e^-4	0.781	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	6019445	3R_6019445_DEL [dm3] 3R_10193723_DEL [dm6]	TTTGTTGG	T	4.522e^-4	0.781	INTRON Syn
2L	13540417	2L_13540417_SNP [dm3] 2L_13540417_SNP [dm6]	T	G	4.536e^-4	0.781	UPSTREAM CG16852 INTRON B4
3R	19533160	3R_19533160_SNP [dm3] 3R_23707438_SNP [dm6]	T	C	4.545e^-4	0.781	UPSTREAM CR44052 INTRON CG31414
X	14746808	X_14746808_SNP [dm3] X_14852775_SNP [dm6]	T	C	4.570e^-4	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo
3R	6309513	3R_6309513_SNP [dm3] 3R_10483791_SNP [dm6]	G	A	4.587e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3007170	3L_3007170_SNP [dm3] 3L_3007170_SNP [dm6]	A	G	4.587e^-4	0.781	INTRON FMRFaR
2L	4755653	2L_4755653_SNP [dm3] 2L_4755653_SNP [dm6]	G	A	4.589e^-4	0.781	INTRON CG15630
3R	16256069	3R_16256069_SNP [dm3] 3R_20430347_SNP [dm6]	G	A	4.592e^-4	0.781	INTRON Gfrl
3R	13363908	3R_13363908_SNP [dm3] 3R_17538186_SNP [dm6]	A	T	4.609e^-4	0.781	SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22136513	2L_22136513_SNP [dm3] 2L_22136513_SNP [dm6]	A	G	4.611e^-4	0.781	INTRON CG42748
3L	17230706	3L_17230706_SNP [dm3] 3L_17237606_SNP [dm6]	G	A	4.616e^-4	0.781	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	11899332	X_11899332_SNP [dm3] X_12005299_SNP [dm6]	T	G	4.620e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6750949	2R_6750949_SNP [dm3] 2R_10863444_SNP [dm6]	C	T	4.623e^-4	0.781	INTRON CG30015
3L	12344452	3L_12344452_SNP [dm3] 3L_12351352_SNP [dm6]	T	G	4.625e^-4	0.781	UTR_5_PRIME CrzR
2R	9766422	2R_9766422_SNP [dm3] 2R_13878917_SNP [dm6]	C	T	4.629e^-4	0.781	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9538012	2R_9538012_SNP [dm3] 2R_13650507_SNP [dm6]	A	G	4.645e^-4	0.781	INTRON fas
2L	12080611	2L_12080611_SNP [dm3] 2L_12080611_SNP [dm6]	T	C	4.649e^-4	0.781	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12080612	2L_12080612_SNP [dm3] 2L_12080612_SNP [dm6]	T	A	4.649e^-4	0.781	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5100165	2L_5100165_SNP [dm3] 2L_5100165_SNP [dm6]	C	G	4.649e^-4	0.781	UTR_5_PRIME CG8680 UPSTREAM Msp300 DOWNSTREAM CG4230	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	697321	3R_697321_SNP [dm3] 3R_4871599_SNP [dm6]	G	A	4.655e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs
2R	1286516	2R_1286516_SNP [dm3] 2R_5399011_SNP [dm6]	T	C	4.657e^-4	0.781	INTERGENIC
2R	6435578	2R_6435578_SNP [dm3] 2R_10548073_SNP [dm6]	G	A	4.670e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8514043	3L_8514043_SNP [dm3] 3L_8520943_SNP [dm6]	T	C	4.676e^-4	0.781	SYNONYMOUS_CODING se DOWNSTREAM GstO3 & 1 other
X	7758036	X_7758036_SNP [dm3] X_7864003_SNP [dm6]	G	A	4.686e^-4	0.781	DOWNSTREAM Ir7b INTERGENIC
2R	12343717	2R_12343717_INS [dm3] 2R_16456212_INS [dm6]	T	TTTCTATGTCCGT...	4.698e^-4	0.781	INTERGENIC
2R	1324523	2R_1324523_SNP [dm3] 2R_5437018_SNP [dm6]	T	C	4.706e^-4	0.781	INTRON laccase2
3R	9696419	3R_9696419_SNP [dm3] 3R_13870697_SNP [dm6]	T	G	4.717e^-4	0.781	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18138629	X_18138629_SNP [dm3] X_18244596_SNP [dm6]	A	G	4.721e^-4	0.781	DOWNSTREAM CR45607 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12358632	3L_12358632_SNP [dm3] 3L_12365532_SNP [dm6]	C	T	4.748e^-4	0.781	INTERGENIC
2R	18593338	2R_18593338_SNP [dm3] 2R_22705833_SNP [dm6]	T	A	4.752e^-4	0.781	DOWNSTREAM Obp58c & 1 other INTERGENIC
X	13964564	X_13964564_SNP [dm3] X_14070531_SNP [dm6]	A	G	4.757e^-4	0.781	UPSTREAM tRNA:S474:12Eh INTERGENIC
3R	15116874	3R_15116874_SNP [dm3] 3R_19291152_SNP [dm6]	C	G	4.763e^-4	0.781	INTERGENIC
2R	10454150	2R_10454150_SNP [dm3] 2R_14566645_SNP [dm6]	T	C	4.764e^-4	0.781	INTRON ttv
3R	3291558	3R_3291558_SNP [dm3] 3R_7465836_SNP [dm6]	A	G	4.766e^-4	0.781	INTERGENIC
X	21901452	X_21901452_SNP [dm3] X_22499616_SNP [dm6]	G	A	4.776e^-4	0.781	DOWNSTREAM l_1_G0196 INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2353756	2L_2353756_SNP [dm3] 2L_2353756_SNP [dm6]	C	T	4.782e^-4	0.781	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25976673	3R_25976673_SNP [dm3] 3R_30150951_SNP [dm6]	G	T	4.784e^-4	0.781	INTERGENIC
3L	11176660	3L_11176660_SNP [dm3] 3L_11183560_SNP [dm6]	C	G	4.790e^-4	0.781	INTRON GlcAT-P
2L	18350086	2L_18350086_SNP [dm3] 2L_18350086_SNP [dm6]	C	T	4.798e^-4	0.781	INTRON Fas3
2L	18350087	2L_18350087_SNP [dm3] 2L_18350087_SNP [dm6]	T	C	4.798e^-4	0.781	INTRON Fas3
2R	1626907	2R_1626907_SNP [dm3] 2R_5739402_SNP [dm6]	G	C	4.805e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2L	5723235	2L_5723235_SNP [dm3] 2L_5723235_SNP [dm6]	A	G	4.806e^-4	0.781	SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8373690	2L_8373690_SNP [dm3] 2L_8373690_SNP [dm6]	T	G	4.814e^-4	0.781	SYNONYMOUS_CODING CG17292 UPSTREAM Wdr82	TF binding site mE1_TFBS_HSA
2R	7351776	2R_7351776_SNP [dm3] 2R_11464271_SNP [dm6]	C	T	4.817e^-4	0.781	UTR_3_PRIME E_Pc_ DOWNSTREAM E_Pc_
3R	24688643	3R_24688643_SNP [dm3] 3R_28862921_SNP [dm6]	A	T	4.826e^-4	0.781	INTRON spg
X	14747722	X_14747722_SNP [dm3] X_14853689_SNP [dm6]	T	C	4.827e^-4	0.781	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3L	10194146	3L_10194146_SNP [dm3] 3L_10201046_SNP [dm6]	T	G	4.829e^-4	0.781	INTRON ect
2L	4672307	2L_4672307_SNP [dm3] 2L_4672307_SNP [dm6]	A	C	4.840e^-4	0.781	INTERGENIC
2L	5444791	2L_5444791_SNP [dm3] 2L_5444791_SNP [dm6]	A	T	4.843e^-4	0.781	INTERGENIC
3R	3447595	3R_3447595_SNP [dm3] 3R_7621873_SNP [dm6]	G	T	4.843e^-4	0.781	INTRON CG34127
3R	3464665	3R_3464665_SNP [dm3] 3R_7638943_SNP [dm6]	G	T	4.843e^-4	0.781	UTR_5_PRIME CG34127	insulator Insulator_Class_II.mE01
2R	13391092	2R_13391092_SNP [dm3] 2R_17503587_SNP [dm6]	C	G	4.846e^-4	0.781	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
3L	18388223	3L_18388223_SNP [dm3] 3L_18395123_SNP [dm6]	T	C	4.846e^-4	0.781	INTERGENIC
2L	4750336	2L_4750336_INS [dm3] 2L_4750336_INS [dm6]	C	GTTGCAACACACT...	4.851e^-4	0.781	INTRON CG15630
2L	7396526	2L_7396526_SNP [dm3] 2L_7396526_SNP [dm6]	C	T	4.852e^-4	0.781	UPSTREAM CG5160 INTRON CG5160
2R	9379903	2R_9379903_SNP [dm3] 2R_13492398_SNP [dm6]	C	T	4.855e^-4	0.781	INTRON bbc
3R	8176753	3R_8176753_SNP [dm3] 3R_12351031_SNP [dm6]	A	G	4.873e^-4	0.781	SYNONYMOUS_CODING CG10041 UPSTREAM CG10038	TF binding site BDTNP1_TFBS_dl
2L	17984609	2L_17984609_SNP [dm3] 2L_17984609_SNP [dm6]	T	C	4.876e^-4	0.781	INTERGENIC
2R	12111756	2R_12111756_SNP [dm3] 2R_16224251_SNP [dm6]	T	C	4.878e^-4	0.781	SYNONYMOUS_CODING CG15706	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17219598	3L_17219598_SNP [dm3] 3L_17226498_SNP [dm6]	A	T	4.878e^-4	0.781	INTRON Rbp6
3L	8819873	3L_8819873_SNP [dm3] 3L_8826773_SNP [dm6]	A	T	4.898e^-4	0.781	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	3398047	3R_3398047_SNP [dm3] 3R_7572325_SNP [dm6]	T	C	4.925e^-4	0.781	SYNONYMOUS_CODING CG34127
3L	11792036	3L_11792036_DEL [dm3] 3L_11798936_DEL [dm6]	ACTA	A	4.927e^-4	0.781	DOWNSTREAM CG10361 & 1 other INTERGENIC
2L	4630068	2L_4630068_SNP [dm3] 2L_4630068_SNP [dm6]	T	C	4.935e^-4	0.781	INTERGENIC
2L	4669817	2L_4669817_SNP [dm3] 2L_4669817_SNP [dm6]	C	T	4.935e^-4	0.781	INTERGENIC
2L	4670723	2L_4670723_SNP [dm3] 2L_4670723_SNP [dm6]	T	A	4.935e^-4	0.781	INTERGENIC
2L	4741260	2L_4741260_INS [dm3] 2L_4741260_INS [dm6]	G	GG	4.935e^-4	0.781	INTRON CG15630
2L	4744221	2L_4744221_SNP [dm3] 2L_4744221_SNP [dm6]	T	A	4.935e^-4	0.781	INTRON CG15630
2L	4744223	2L_4744223_SNP [dm3] 2L_4744223_SNP [dm6]	T	A	4.935e^-4	0.781	INTRON CG15630
2L	4758852	2L_4758852_SNP [dm3] 2L_4758852_SNP [dm6]	A	G	4.935e^-4	0.781	INTRON CG15630
2L	4761680	2L_4761680_SNP [dm3] 2L_4761680_SNP [dm6]	C	T	4.935e^-4	0.781	INTRON CG15630
2L	4761711	2L_4761711_INS [dm3] 2L_4761711_INS [dm6]	G	GT	4.935e^-4	0.781	INTRON CG15630
2L	4761713	2L_4761713_SNP [dm3] 2L_4761713_SNP [dm6]	T	A	4.935e^-4	0.781	INTRON CG15630
2L	4761718	2L_4761718_SNP [dm3] 2L_4761718_SNP [dm6]	C	A	4.935e^-4	0.781	INTRON CG15630
2L	4761719	2L_4761719_SNP [dm3] 2L_4761719_SNP [dm6]	T	A	4.935e^-4	0.781	INTRON CG15630
2L	4761722	2L_4761722_DEL [dm3] 2L_4761722_DEL [dm6]	TT	A	4.935e^-4	0.781	INTRON CG15630
2L	4761725	2L_4761725_SNP [dm3] 2L_4761725_SNP [dm6]	A	G	4.935e^-4	0.781	INTRON CG15630
2L	4762036	2L_4762036_SNP [dm3] 2L_4762036_SNP [dm6]	A	G	4.935e^-4	0.781	UPSTREAM CG42523 INTRON CG15630
2L	4765734	2L_4765734_SNP [dm3] 2L_4765734_SNP [dm6]	C	T	4.935e^-4	0.781	INTRON CG15630
2L	4767944	2L_4767944_SNP [dm3] 2L_4767944_SNP [dm6]	A	T	4.935e^-4	0.781	INTRON CG15630
2L	4768918	2L_4768918_SNP [dm3] 2L_4768918_SNP [dm6]	G	C	4.935e^-4	0.781	INTRON CG15630
2L	4998902	2L_4998902_SNP [dm3] 2L_4998902_SNP [dm6]	G	C	4.935e^-4	0.781	INTRON Rtnl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_Trl
2L	7455510	2L_7455510_SNP [dm3] 2L_7455510_SNP [dm6]	T	C	4.935e^-4	0.781	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_HSA
2L	7456275	2L_7456275_SNP [dm3] 2L_7456275_SNP [dm6]	A	C	4.935e^-4	0.781	NON_SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
2R	1417537	2R_1417537_INS [dm3] 2R_5530032_INS [dm6]	A	ACACTAGAATAAC...	4.935e^-4	0.781	INTRON CG30438
2R	1419688	2R_1419688_SNP [dm3] 2R_5532183_SNP [dm6]	A	C	4.935e^-4	0.781	INTRON CG30438
2R	1423578	2R_1423578_SNP [dm3] 2R_5536073_SNP [dm6]	C	T	4.935e^-4	0.781	INTRON CG30438
2R	5954230	2R_5954230_SNP [dm3] 2R_10066725_SNP [dm6]	A	G	4.935e^-4	0.781	START_GAINED mRpL42 UTR_5_PRIME mRpL42 UPSTREAM mRpL42 & 1 other DOWNSTREAM cdc2rk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18024810	3L_18024810_SNP [dm3] 3L_18031710_SNP [dm6]	T	A	4.936e^-4	0.781	INTRON Eip75B
3L	18024824	3L_18024824_SNP [dm3] 3L_18031724_SNP [dm6]	G	A	4.936e^-4	0.781	INTRON Eip75B
3L	18024825	3L_18024825_SNP [dm3] 3L_18031725_SNP [dm6]	C	T	4.936e^-4	0.781	INTRON Eip75B
3L	18024849	3L_18024849_SNP [dm3] 3L_18031749_SNP [dm6]	A	G	4.936e^-4	0.781	INTRON Eip75B
3L	18024855	3L_18024855_SNP [dm3] 3L_18031755_SNP [dm6]	A	T	4.936e^-4	0.781	INTRON Eip75B
3L	18024865	3L_18024865_SNP [dm3] 3L_18031765_SNP [dm6]	T	A	4.936e^-4	0.781	INTRON Eip75B
3L	7087862	3L_7087862_SNP [dm3] 3L_7094762_SNP [dm6]	G	T	4.937e^-4	0.781	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	9233602	3L_9233602_SNP [dm3] 3L_9240502_SNP [dm6]	G	A	4.944e^-4	0.781	INTERGENIC
X	6626664	X_6626664_SNP [dm3] X_6732631_SNP [dm6]	G	A	4.958e^-4	0.781	UPSTREAM CR43461 INTRON CG3168	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
X	15677814	X_15677814_INS [dm3] X_15783781_INS [dm6]	T	TT	4.962e^-4	0.781	UPSTREAM Efhc1.1 DOWNSTREAM Paf-AHalpha INTERGENIC
3R	10823948	3R_10823948_SNP [dm3] 3R_14998226_SNP [dm6]	T	C	4.962e^-4	0.781	INTERGENIC
3R	26804836	3R_26804836_SNP [dm3] 3R_30979114_SNP [dm6]	A	T	4.975e^-4	0.781	INTRON 5-HT7
3L	12278126	3L_12278126_SNP [dm3] 3L_12285026_SNP [dm6]	T	C	4.979e^-4	0.781	INTERGENIC
3R	6723171	3R_6723171_SNP [dm3] 3R_10897449_SNP [dm6]	A	G	4.979e^-4	0.781	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
2R	6623625	2R_6623625_SNP [dm3] 2R_10736120_SNP [dm6]	T	C	4.981e^-4	0.781	INTRON CG7220
3R	6309634	3R_6309634_SNP [dm3] 3R_10483912_SNP [dm6]	T	G	4.996e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6309671	3R_6309671_SNP [dm3] 3R_10483949_SNP [dm6]	A	T	4.996e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6309672	3R_6309672_SNP [dm3] 3R_10483950_SNP [dm6]	A	T	4.996e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18359325	2L_18359325_SNP [dm3] 2L_18359325_SNP [dm6]	A	T	4.996e^-4	0.781	UPSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da
3R	19461535	3R_19461535_SNP [dm3] 3R_23635813_SNP [dm6]	T	A	5.012e^-4	0.781	INTRON CG31145
3R	14130176	3R_14130176_SNP [dm3] 3R_18304454_SNP [dm6]	G	A	5.013e^-4	0.781	SYNONYMOUS_CODING PKD	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2988160	2L_2988160_SNP [dm3] 2L_2988160_SNP [dm6]	T	G	5.013e^-4	0.781	UTR_5_PRIME Bem46 UPSTREAM Chd1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11927683	3L_11927683_SNP [dm3] 3L_11934583_SNP [dm6]	C	T	5.015e^-4	0.781	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17677940	2R_17677940_SNP [dm3] 2R_21790435_SNP [dm6]	C	G	5.033e^-4	0.781	SYNONYMOUS_CODING lox2
2R	10422286	2R_10422286_SNP [dm3] 2R_14534781_SNP [dm6]	A	T	5.053e^-4	0.781	INTRON ttv
3L	11527949	3L_11527949_SNP [dm3] 3L_11534849_SNP [dm6]	C	T	5.056e^-4	0.781	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5587881	2L_5587881_SNP [dm3] 2L_5587881_SNP [dm6]	G	A	5.065e^-4	0.781	SYNONYMOUS_CODING CG7251
2L	15457235	2L_15457235_SNP [dm3] 2L_15457235_SNP [dm6]	G	A	5.069e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15457242	2L_15457242_SNP [dm3] 2L_15457242_SNP [dm6]	G	A	5.069e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15457244	2L_15457244_INS [dm3] 2L_15457244_INS [dm6]	T	CAC	5.069e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10779427	2L_10779427_SNP [dm3] 2L_10779427_SNP [dm6]	A	G	5.071e^-4	0.781	INTRON CG31869
2L	11186198	2L_11186198_SNP [dm3] 2L_11186198_SNP [dm6]	C	T	5.071e^-4	0.781	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11947012	2L_11947012_SNP [dm3] 2L_11947012_SNP [dm6]	C	T	5.071e^-4	0.781	UTR_3_PRIME Cry UPSTREAM CG16964 DOWNSTREAM Cry
2L	11947013	2L_11947013_SNP [dm3] 2L_11947013_SNP [dm6]	T	C	5.071e^-4	0.781	UTR_3_PRIME Cry UPSTREAM CG16964 DOWNSTREAM Cry
2L	20224756	2L_20224756_SNP [dm3] 2L_20224756_SNP [dm6]	G	A	5.071e^-4	0.781	INTERGENIC
2L	20224825	2L_20224825_SNP [dm3] 2L_20224825_SNP [dm6]	C	A	5.071e^-4	0.781	INTERGENIC
2L	4623398	2L_4623398_SNP [dm3] 2L_4623398_SNP [dm6]	T	A	5.071e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4639176	2L_4639176_SNP [dm3] 2L_4639176_SNP [dm6]	G	T	5.071e^-4	0.781	INTERGENIC
2L	4743918	2L_4743918_SNP [dm3] 2L_4743918_SNP [dm6]	A	T	5.071e^-4	0.781	INTRON CG15630
2L	4757741	2L_4757741_SNP [dm3] 2L_4757741_SNP [dm6]	A	C	5.071e^-4	0.781	INTRON CG15630
2L	4758215	2L_4758215_SNP [dm3] 2L_4758215_SNP [dm6]	C	T	5.071e^-4	0.781	INTRON CG15630
2L	4762138	2L_4762138_SNP [dm3] 2L_4762138_SNP [dm6]	T	C	5.071e^-4	0.781	UPSTREAM CG42523 INTRON CG15630
2L	4762779	2L_4762779_SNP [dm3] 2L_4762779_SNP [dm6]	G	C	5.071e^-4	0.781	UPSTREAM CG42523 INTRON CG15630
2L	4762860	2L_4762860_SNP [dm3] 2L_4762860_SNP [dm6]	A	G	5.071e^-4	0.781	UPSTREAM CG42523 INTRON CG15630
2L	4764739	2L_4764739_SNP [dm3] 2L_4764739_SNP [dm6]	A	G	5.071e^-4	0.781	DOWNSTREAM CG42523 INTRON CG15630
2L	4764844	2L_4764844_SNP [dm3] 2L_4764844_SNP [dm6]	G	A	5.071e^-4	0.781	DOWNSTREAM CG42523 INTRON CG15630
2L	4767095	2L_4767095_SNP [dm3] 2L_4767095_SNP [dm6]	C	T	5.071e^-4	0.781	INTRON CG15630
2L	4767334	2L_4767334_SNP [dm3] 2L_4767334_SNP [dm6]	G	C	5.071e^-4	0.781	INTRON CG15630
2L	4767956	2L_4767956_SNP [dm3] 2L_4767956_SNP [dm6]	T	A	5.071e^-4	0.781	INTRON CG15630
2L	4768725	2L_4768725_SNP [dm3] 2L_4768725_SNP [dm6]	A	G	5.071e^-4	0.781	INTRON CG15630
2L	4769759	2L_4769759_SNP [dm3] 2L_4769759_SNP [dm6]	T	G	5.071e^-4	0.781	INTRON CG15630
2L	4769767	2L_4769767_SNP [dm3] 2L_4769767_SNP [dm6]	G	T	5.071e^-4	0.781	INTRON CG15630
2L	5404623	2L_5404623_SNP [dm3] 2L_5404623_SNP [dm6]	A	C	5.071e^-4	0.781	UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	7105943	2L_7105943_SNP [dm3] 2L_7105943_SNP [dm6]	C	T	5.071e^-4	0.781	INTRON Pvf3
2L	7454122	2L_7454122_SNP [dm3] 2L_7454122_SNP [dm6]	G	A	5.071e^-4	0.781	SYNONYMOUS_CODING Gr28a DOWNSTREAM Gr28b
2R	1324473	2R_1324473_SNP [dm3] 2R_5436968_SNP [dm6]	A	T	5.071e^-4	0.781	INTRON laccase2
2R	1411747	2R_1411747_DEL [dm3] 2R_5524242_DEL [dm6]	TCGAT	T	5.071e^-4	0.781	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
2R	1412161	2R_1412161_SNP [dm3] 2R_5524656_SNP [dm6]	C	T	5.071e^-4	0.781	UPSTREAM CG30438 INTRON CG30438
2R	1417621	2R_1417621_SNP [dm3] 2R_5530116_SNP [dm6]	G	T	5.071e^-4	0.781	INTRON CG30438	transposable element FlyBase
2R	1421731	2R_1421731_SNP [dm3] 2R_5534226_SNP [dm6]	T	A	5.071e^-4	0.781	INTRON CG30438	transposable element FlyBase
2R	1422116	2R_1422116_SNP [dm3] 2R_5534611_SNP [dm6]	T	A	5.071e^-4	0.781	INTRON CG30438	transposable element FlyBase
2R	1424096	2R_1424096_SNP [dm3] 2R_5536591_SNP [dm6]	C	T	5.071e^-4	0.781	INTRON CG30438	TF binding site BDTNP1_TFBS_dl
2R	1424122	2R_1424122_SNP [dm3] 2R_5536617_SNP [dm6]	C	T	5.071e^-4	0.781	INTRON CG30438	TF binding site BDTNP1_TFBS_dl
2R	1424144	2R_1424144_DEL [dm3] 2R_5536639_DEL [dm6]	TTTCAATT	CGC	5.071e^-4	0.781	INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1424159	2R_1424159_SNP [dm3] 2R_5536654_SNP [dm6]	G	T	5.071e^-4	0.781	INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8961673	2L_8961673_SNP [dm3] 2L_8961673_SNP [dm6]	C	T	5.088e^-4	0.781	NON_SYNONYMOUS_CODING CG9525 UPSTREAM CG32985
3R	6028828	3R_6028828_SNP [dm3] 3R_10203106_SNP [dm6]	A	C	5.104e^-4	0.781	DOWNSTREAM Timp INTRON Syn	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8176245	2R_8176245_SNP [dm3] 2R_12288740_SNP [dm6]	A	G	5.108e^-4	0.781	INTRON CG42700
X	4764209	X_4764209_SNP [dm3] X_4870176_SNP [dm6]	T	C	5.110e^-4	0.781	INTRON CG42594
3L	11385982	3L_11385982_SNP [dm3] 3L_11392882_SNP [dm6]	A	C	5.123e^-4	0.781	INTERGENIC
2L	12080685	2L_12080685_SNP [dm3] 2L_12080685_SNP [dm6]	A	T	5.127e^-4	0.781	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11115991	3L_11115991_SNP [dm3] 3L_11122891_SNP [dm6]	A	G	5.127e^-4	0.781	UPSTREAM CG42575 DOWNSTREAM mRpL2 INTRON Ufd1-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	11115997	3L_11115997_SNP [dm3] 3L_11122897_SNP [dm6]	T	A	5.127e^-4	0.781	UPSTREAM CG42575 DOWNSTREAM mRpL2 INTRON Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	11115999	3L_11115999_SNP [dm3] 3L_11122899_SNP [dm6]	T	G	5.127e^-4	0.781	UPSTREAM CG42575 DOWNSTREAM mRpL2 INTRON Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3R	17979647	3R_17979647_SNP [dm3] 3R_22153925_SNP [dm6]	T	C	5.132e^-4	0.781	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19265742	2L_19265742_SNP [dm3] 2L_19265742_SNP [dm6]	C	T	5.133e^-4	0.781	INTERGENIC
2L	18343930	2L_18343930_SNP [dm3] 2L_18343930_SNP [dm6]	C	T	5.138e^-4	0.781	INTRON Fas3
2L	4140318	2L_4140318_SNP [dm3] 2L_4140318_SNP [dm6]	C	T	5.160e^-4	0.781	INTERGENIC
3L	12495929	3L_12495929_SNP [dm3] 3L_12502829_SNP [dm6]	C	T	5.161e^-4	0.781	SYNONYMOUS_CODING CG10646 DOWNSTREAM CG10681	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15153940	3R_15153940_SNP [dm3] 3R_19328218_SNP [dm6]	T	C	5.161e^-4	0.781	UPSTREAM CR44175 INTERGENIC
3R	15153994	3R_15153994_SNP [dm3] 3R_19328272_SNP [dm6]	T	A	5.161e^-4	0.781	UPSTREAM CR44175 INTERGENIC
3R	15154248	3R_15154248_SNP [dm3] 3R_19328526_SNP [dm6]	C	A	5.161e^-4	0.781	UPSTREAM CR44175 INTERGENIC
3R	19454199	3R_19454199_SNP [dm3] 3R_23628477_SNP [dm6]	G	A	5.187e^-4	0.781	INTRON CG31145
3R	15335310	3R_15335310_SNP [dm3] 3R_19509588_SNP [dm6]	A	G	5.188e^-4	0.781	INTRON Dys
3L	7952540	3L_7952540_SNP [dm3] 3L_7959440_SNP [dm6]	A	G	5.191e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19764948	3R_19764948_SNP [dm3] 3R_23939226_SNP [dm6]	T	C	5.195e^-4	0.781	UPSTREAM Gdh INTRON Gdh
2L	12002726	2L_12002726_SNP [dm3] 2L_12002726_SNP [dm6]	T	C	5.208e^-4	0.781	UPSTREAM CG6746 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	6342928	2L_6342928_SNP [dm3] 2L_6342928_SNP [dm6]	G	C	5.220e^-4	0.781	SYNONYMOUS_CODING Cpr UPSTREAM Cpr	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_inv mE1_TFBS_sens
3R	25850736	3R_25850736_SNP [dm3] 3R_30025014_SNP [dm6]	G	C	5.227e^-4	0.781	INTRON Axn
2R	9579274	2R_9579274_SNP [dm3] 2R_13691769_SNP [dm6]	G	A	5.240e^-4	0.781	UTR_3_PRIME CG6220 INTRON fas
X	14745265	X_14745265_SNP [dm3] X_14851232_SNP [dm6]	T	G	5.242e^-4	0.781	UTR_3_PRIME CG9521 INTRON Flo2
X	14745317	X_14745317_SNP [dm3] X_14851284_SNP [dm6]	A	G	5.242e^-4	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2
X	14745769	X_14745769_SNP [dm3] X_14851736_SNP [dm6]	A	G	5.242e^-4	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_sens
2R	18072165	2R_18072165_SNP [dm3] 2R_22184660_SNP [dm6]	C	T	5.244e^-4	0.781	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4159793	2L_4159793_SNP [dm3] 2L_4159793_SNP [dm6]	C	T	5.257e^-4	0.781	INTERGENIC
2L	4159833	2L_4159833_SNP [dm3] 2L_4159833_SNP [dm6]	C	T	5.257e^-4	0.781	INTERGENIC
2R	12327532	2R_12327532_SNP [dm3] 2R_16440027_SNP [dm6]	T	C	5.279e^-4	0.781	INTERGENIC
X	3003820	X_3003820_SNP [dm3] X_3109787_SNP [dm6]	A	T	5.280e^-4	0.781	INTRON kirre
X	11899167	X_11899167_SNP [dm3] X_12005134_SNP [dm6]	G	T	5.280e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4534413	3L_4534413_SNP [dm3] 3L_4534413_SNP [dm6]	G	A	5.289e^-4	0.781	INTRON CG11353
2L	4256026	2L_4256026_SNP [dm3] 2L_4256026_SNP [dm6]	T	C	5.295e^-4	0.781	DOWNSTREAM CR45295 & 1 other EXON CR45294
2L	3870133	2L_3870133_SNP [dm3] 2L_3870133_SNP [dm6]	C	T	5.317e^-4	0.781	SYNONYMOUS_CODING Cep97 START_GAINED Cep97 UTR_5_PRIME Cep97
2L	4761703	2L_4761703_SNP [dm3] 2L_4761703_SNP [dm6]	C	T	5.317e^-4	0.781	INTRON CG15630
2L	6700087	2L_6700087_SNP [dm3] 2L_6700087_SNP [dm6]	G	A	5.317e^-4	0.781	SYNONYMOUS_CODING Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1454045	3L_1454045_SNP [dm3] 3L_1454045_SNP [dm6]	T	A	5.319e^-4	0.781	INTRON Ptp61F
2L	19980440	2L_19980440_INS [dm3] 2L_19980440_INS [dm6]	C	CATA	5.326e^-4	0.781	DOWNSTREAM CR43620 INTRON CG43861
2L	18364290	2L_18364290_DEL [dm3] 2L_18364290_DEL [dm6]	CA	C	5.344e^-4	0.781	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18364295	2L_18364295_SNP [dm3] 2L_18364295_SNP [dm6]	T	G	5.344e^-4	0.781	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18366273	2L_18366273_SNP [dm3] 2L_18366273_SNP [dm6]	C	A	5.344e^-4	0.781	INTRON Fas3
3L	17950359	3L_17950359_SNP [dm3] 3L_17957259_SNP [dm6]	T	C	5.350e^-4	0.781	INTRON Eip75B
3L	17950367	3L_17950367_SNP [dm3] 3L_17957267_SNP [dm6]	C	T	5.350e^-4	0.781	INTRON Eip75B
2L	20036753	2L_20036753_SNP [dm3] 2L_20036753_SNP [dm6]	C	G	5.355e^-4	0.781	INTRON sNPF
3L	7087884	3L_7087884_INS [dm3] 3L_7094784_INS [dm6]	C	CC	5.357e^-4	0.781	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	22059344	2L_22059344_SNP [dm3] 2L_22059344_SNP [dm6]	A	G	5.367e^-4	0.781	INTERGENIC
3L	18338100	3L_18338100_SNP [dm3] 3L_18345000_SNP [dm6]	A	C	5.378e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3L	18338113	3L_18338113_DEL [dm3] 3L_18345013_DEL [dm6]	AGCATTATATTTTAAAAAA...	A	5.378e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3L	18338193	3L_18338193_SNP [dm3] 3L_18345093_SNP [dm6]	C	G	5.378e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	18338199	3L_18338199_SNP [dm3] 3L_18345099_SNP [dm6]	C	A	5.378e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11929576	3L_11929576_SNP [dm3] 3L_11936476_SNP [dm6]	G	T	5.388e^-4	0.781	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
2R	20102464	2R_20102464_SNP [dm3] 2R_24214941_SNP [dm6]	C	A	5.389e^-4	0.781	UTR_3_PRIME CG30419	TF binding site mE1_TFBS_chinmo
3R	836865	3R_836865_SNP [dm3] 3R_5011143_SNP [dm6]	G	T	5.394e^-4	0.781	UPSTREAM CG2022 INTERGENIC
3R	26161471	3R_26161471_SNP [dm3] 3R_30335749_SNP [dm6]	A	T	5.407e^-4	0.781	INTRON hdc
2R	1626300	2R_1626300_SNP [dm3] 2R_5738795_SNP [dm6]	A	T	5.408e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3L	18659852	3L_18659852_SNP [dm3] 3L_18666752_SNP [dm6]	C	G	5.409e^-4	0.781	UTR_3_PRIME MYPT-75D UPSTREAM CG42495	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	12565538	X_12565538_SNP [dm3] X_12671505_SNP [dm6]	C	T	5.411e^-4	0.781	INTRON Tis11
3R	6732601	3R_6732601_DEL [dm3] 3R_10906879_DEL [dm6]	GATTTAATTGGGTATTTCTG...	G	5.432e^-4	0.781	INTERGENIC
3R	14754867	3R_14754867_SNP [dm3] 3R_18929145_SNP [dm6]	T	C	5.433e^-4	0.781	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8426670	2R_8426670_SNP [dm3] 2R_12539165_SNP [dm6]	G	A	5.444e^-4	0.781	INTRON fra
2R	8178793	2R_8178793_SNP [dm3] 2R_12291288_SNP [dm6]	G	T	5.464e^-4	0.781	INTRON CG42700
X	14745623	X_14745623_SNP [dm3] X_14851590_SNP [dm6]	T	C	5.465e^-4	0.781	SYNONYMOUS_CODING CG9521 INTRON Flo2
2L	7004146	2L_7004146_SNP [dm3] 2L_7004146_SNP [dm6]	C	T	5.471e^-4	0.781	INTRON uif	TF binding site BDTNP1_TFBS_dl
3R	14514802	3R_14514802_SNP [dm3] 3R_18689080_SNP [dm6]	A	T	5.492e^-4	0.781	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19121311	2R_19121311_SNP [dm3] 2R_23233788_SNP [dm6]	T	C	5.493e^-4	0.781	SYNONYMOUS_CODING CG3092	TF binding site mE1_TFBS_cad
3R	6727046	3R_6727046_SNP [dm3] 3R_10901324_SNP [dm6]	G	A	5.504e^-4	0.781	INTERGENIC
X	20758831	X_20758831_SNP [dm3] X_20887804_SNP [dm6]	C	T	5.504e^-4	0.781	INTRON shakB
3L	11925839	3L_11925839_SNP [dm3] 3L_11932739_SNP [dm6]	A	C	5.512e^-4	0.781	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6726171	3R_6726171_SNP [dm3] 3R_10900449_SNP [dm6]	G	A	5.520e^-4	0.781	INTERGENIC
X	18102065	X_18102065_SNP [dm3] X_18208032_SNP [dm6]	C	A	5.524e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18102066	X_18102066_SNP [dm3] X_18208033_SNP [dm6]	C	A	5.524e^-4	0.781	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12557213	3L_12557213_SNP [dm3] 3L_12564113_SNP [dm6]	C	G	5.540e^-4	0.781	INTRON sowah
3L	12557233	3L_12557233_SNP [dm3] 3L_12564133_SNP [dm6]	G	A	5.540e^-4	0.781	INTRON sowah
2L	685138	2L_685138_SNP [dm3] 2L_685138_SNP [dm6]	C	T	5.547e^-4	0.781	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18343716	2L_18343716_SNP [dm3] 2L_18343716_SNP [dm6]	G	T	5.569e^-4	0.781	INTRON Fas3
2L	18343901	2L_18343901_SNP [dm3] 2L_18343901_SNP [dm6]	T	C	5.569e^-4	0.781	INTRON Fas3
2L	18348622	2L_18348622_SNP [dm3] 2L_18348622_SNP [dm6]	C	G	5.569e^-4	0.781	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18352037	2L_18352037_SNP [dm3] 2L_18352037_SNP [dm6]	A	T	5.569e^-4	0.781	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18353156	2L_18353156_DEL [dm3] 2L_18353156_DEL [dm6]	TATGGTAGT	T	5.569e^-4	0.781	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
X	12340011	X_12340011_SNP [dm3] X_12445978_SNP [dm6]	G	A	5.575e^-4	0.781	SYNONYMOUS_CODING Pkcdelta INTRON Pkcdelta

By genomic position
Variant impact
Gene name

productivity2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results