DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.734e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1298 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11361515	2L_11361515_SNP [dm3] 2L_11361515_SNP [dm6]	A	G	1.976e^-6	0.885	INTRON salr	regulatory region REDfly_CRMs
3R	13588263	3R_13588263_INS [dm3] 3R_17762541_INS [dm6]	G	GTCG	2.029e^-6	0.885	UTR_5_PRIME TyrR UPSTREAM TyrR
3R	24217371	3R_24217371_SNP [dm3] 3R_28391649_SNP [dm6]	C	A	3.376e^-6	0.885	INTERGENIC
3L	970831	3L_970831_SNP [dm3] 3L_970831_SNP [dm6]	A	G	4.510e^-6	0.885	INTRON Glut1
3R	9151822	3R_9151822_SNP [dm3] 3R_13326100_SNP [dm6]	T	C	6.537e^-6	0.885	INTERGENIC
3R	16739456	3R_16739456_SNP [dm3] 3R_20913734_SNP [dm6]	C	T	6.554e^-6	0.885	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11361516	2L_11361516_SNP [dm3] 2L_11361516_SNP [dm6]	T	C	6.993e^-6	0.885	INTRON salr	regulatory region REDfly_CRMs
3R	26119375	3R_26119375_SNP [dm3] 3R_30293653_SNP [dm6]	T	A	7.462e^-6	0.885	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3911257	X_3911257_SNP [dm3] X_4017224_SNP [dm6]	G	A	9.644e^-6	0.885	INTERGENIC
X	2794934	X_2794934_SNP [dm3] X_2900901_SNP [dm6]	A	C	1.049e^-5	0.885	INTRON kirre
3R	11618479	3R_11618479_SNP [dm3] 3R_15792757_SNP [dm6]	G	C	1.100e^-5	0.885	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
3R	13588248	3R_13588248_SNP [dm3] 3R_17762526_SNP [dm6]	G	A	1.174e^-5	0.885	UTR_5_PRIME TyrR UPSTREAM TyrR
3R	26119383	3R_26119383_SNP [dm3] 3R_30293661_SNP [dm6]	G	C	1.225e^-5	0.885	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1383873	3L_1383873_SNP [dm3] 3L_1383873_SNP [dm6]	A	C	1.264e^-5	0.885	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
X	3911217	X_3911217_SNP [dm3] X_4017184_SNP [dm6]	C	A	1.343e^-5	0.885	INTERGENIC
X	3911229	X_3911229_SNP [dm3] X_4017196_SNP [dm6]	T	G	1.343e^-5	0.885	INTERGENIC
2L	11360994	2L_11360994_SNP [dm3] 2L_11360994_SNP [dm6]	G	C	1.376e^-5	0.885	INTRON salr	regulatory region REDfly_CRMs
2L	15343672	2L_15343672_DEL [dm3] 2L_15343672_DEL [dm6]	AAAT	A	1.397e^-5	0.885	INTERGENIC
2L	15343677	2L_15343677_SNP [dm3] 2L_15343677_SNP [dm6]	A	T	1.397e^-5	0.885	INTERGENIC
2L	15343679	2L_15343679_SNP [dm3] 2L_15343679_SNP [dm6]	T	C	1.397e^-5	0.885	INTERGENIC
2L	15343680	2L_15343680_SNP [dm3] 2L_15343680_SNP [dm6]	T	A	1.397e^-5	0.885	INTERGENIC
2L	15343689	2L_15343689_SNP [dm3] 2L_15343689_SNP [dm6]	T	A	1.397e^-5	0.885	INTERGENIC
X	3911242	X_3911242_DEL [dm3] X_4017209_DEL [dm6]	TAATATCAGT	T	1.538e^-5	0.885	INTERGENIC
3R	11618443	3R_11618443_SNP [dm3] 3R_15792721_SNP [dm6]	A	G	1.699e^-5	0.885	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3L	12834135	3L_12834135_SNP [dm3] 3L_12841035_SNP [dm6]	G	T	1.817e^-5	0.885	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	11139011	X_11139011_SNP [dm3] X_11244978_SNP [dm6]	C	G	1.853e^-5	0.885	INTRON CG44422
2L	8010191	2L_8010191_SNP [dm3] 2L_8010191_SNP [dm6]	G	A	1.915e^-5	0.885	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3911227	X_3911227_SNP [dm3] X_4017194_SNP [dm6]	A	T	1.983e^-5	0.885	INTERGENIC
3L	9088728	3L_9088728_SNP [dm3] 3L_9095628_SNP [dm6]	C	T	2.049e^-5	0.885	DOWNSTREAM CG32032 INTERGENIC
3R	26119373	3R_26119373_SNP [dm3] 3R_30293651_SNP [dm6]	G	C	2.153e^-5	0.885	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15737816	3L_15737816_SNP [dm3] 3L_15744716_SNP [dm6]	A	T	2.162e^-5	0.885	INTERGENIC
3R	24807557	3R_24807557_SNP [dm3] 3R_28981835_SNP [dm6]	C	T	2.172e^-5	0.885	INTERGENIC
3L	17335883	3L_17335883_SNP [dm3] 3L_17342783_SNP [dm6]	G	A	2.355e^-5	0.885	INTRON brv2
3L	13541893	3L_13541893_INS [dm3] 3L_13548793_INS [dm6]	C	CGGACAC	2.383e^-5	0.885	INTRON bru-3
3R	9196465	3R_9196465_SNP [dm3] 3R_13370743_SNP [dm6]	C	A	2.449e^-5	0.885	DOWNSTREAM CheA87a INTRON Lip3
3R	9196475	3R_9196475_SNP [dm3] 3R_13370753_SNP [dm6]	T	C	2.449e^-5	0.885	DOWNSTREAM CheA87a INTRON Lip3
2R	5318902	2R_5318902_INS [dm3] 2R_9431397_INS [dm6]	A	ATACA	2.451e^-5	0.885	INTRON Pdk
3L	7986579	3L_7986579_MNP [dm3] 3L_7993479_MNP [dm6]	GTT	TAG	2.465e^-5	0.885	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	12940092	X_12940092_SNP [dm3] X_13046059_SNP [dm6]	T	G	2.538e^-5	0.885	INTRON rad
3L	7061417	3L_7061417_SNP [dm3] 3L_7068317_SNP [dm6]	G	A	2.550e^-5	0.885	SYNONYMOUS_CODING CG32391 DOWNSTREAM CG14823 INTRON CG8641
X	4519489	X_4519489_SNP [dm3] X_4625456_SNP [dm6]	C	T	2.592e^-5	0.885	SYNONYMOUS_CODING peb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9196104	3R_9196104_SNP [dm3] 3R_13370382_SNP [dm6]	G	A	2.759e^-5	0.885	SYNONYMOUS_CODING Lip3 DOWNSTREAM CheA87a
2R	6379235	2R_6379235_SNP [dm3] 2R_10491730_SNP [dm6]	C	T	2.889e^-5	0.885	UTR_3_PRIME lola INTRON lola
2R	6508001	2R_6508001_SNP [dm3] 2R_10620496_SNP [dm6]	A	C	2.889e^-5	0.885	INTRON CG11883
2L	14359817	2L_14359817_SNP [dm3] 2L_14359817_SNP [dm6]	T	C	2.953e^-5	0.885	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5376612	3L_5376612_DEL [dm3] 3L_5383512_DEL [dm6]	CTGT	A	2.964e^-5	0.885	UPSTREAM Ir64a INTERGENIC
3L	1605240	3L_1605240_SNP [dm3] 3L_1605240_SNP [dm6]	A	C	2.992e^-5	0.885	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
2R	6452247	2R_6452247_SNP [dm3] 2R_10564742_SNP [dm6]	C	T	3.015e^-5	0.885	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	19388879	3L_19388879_SNP [dm3] 3L_19395779_SNP [dm6]	G	C	3.118e^-5	0.885	INTRON CG32206
3L	14642055	3L_14642055_SNP [dm3] 3L_14648955_SNP [dm6]	A	T	3.221e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642058	3L_14642058_SNP [dm3] 3L_14648958_SNP [dm6]	G	A	3.221e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642078	3L_14642078_MNP [dm3] 3L_14648978_MNP [dm6]	GGG	AAA	3.221e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	19388797	3L_19388797_SNP [dm3] 3L_19395697_SNP [dm6]	A	G	3.312e^-5	0.885	INTRON CG32206
3L	2622009	3L_2622009_SNP [dm3] 3L_2622009_SNP [dm6]	A	T	3.386e^-5	0.885	INTRON Pxn
3L	9088629	3L_9088629_SNP [dm3] 3L_9095529_SNP [dm6]	C	G	3.507e^-5	0.885	DOWNSTREAM CG32032 INTERGENIC
3R	10604335	3R_10604335_SNP [dm3] 3R_14778613_SNP [dm6]	G	A	3.565e^-5	0.885	INTRON jvl
3R	25365859	3R_25365859_SNP [dm3] 3R_29540137_SNP [dm6]	T	A	3.704e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9088625	3L_9088625_SNP [dm3] 3L_9095525_SNP [dm6]	C	T	3.770e^-5	0.885	DOWNSTREAM CG32032 INTERGENIC
3L	8246620	3L_8246620_SNP [dm3] 3L_8253520_SNP [dm6]	A	T	3.880e^-5	0.885	INTRON Dscam4
3R	9385445	3R_9385445_SNP [dm3] 3R_13559723_SNP [dm6]	T	A	3.932e^-5	0.885	INTERGENIC
3R	9385447	3R_9385447_SNP [dm3] 3R_13559725_SNP [dm6]	C	T	3.932e^-5	0.885	INTERGENIC
X	14382716	X_14382716_SNP [dm3] X_14488683_SNP [dm6]	T	C	4.173e^-5	0.885	INTERGENIC
2L	15343669	2L_15343669_SNP [dm3] 2L_15343669_SNP [dm6]	A	T	4.191e^-5	0.885	INTERGENIC
2L	15343684	2L_15343684_MNP [dm3] 2L_15343684_MNP [dm6]	GTT	ACA	4.191e^-5	0.885	INTERGENIC
2L	15343691	2L_15343691_DEL [dm3] 2L_15343691_DEL [dm6]	CAC	A	4.191e^-5	0.885	INTERGENIC
2R	11059590	2R_11059590_SNP [dm3] 2R_15172085_SNP [dm6]	T	C	4.287e^-5	0.885	INTRON igl
2R	6508603	2R_6508603_SNP [dm3] 2R_10621098_SNP [dm6]	T	G	4.287e^-5	0.885	INTRON CG11883
3R	24366641	3R_24366641_SNP [dm3] 3R_28540919_SNP [dm6]	G	A	4.326e^-5	0.885	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12135321	2L_12135321_SNP [dm3] 2L_12135321_SNP [dm6]	T	G	4.473e^-5	0.885	INTERGENIC
3L	16433813	3L_16433813_SNP [dm3] 3L_16440713_SNP [dm6]	G	A	4.561e^-5	0.885	INTRON CG33158 & 1 other
3L	20070404	3L_20070404_SNP [dm3] 3L_20077304_SNP [dm6]	G	T	4.578e^-5	0.885	INTRON sNPF-R
3R	12384171	3R_12384171_SNP [dm3] 3R_16558449_SNP [dm6]	C	T	4.789e^-5	0.885	INTRON CG42342
3L	14642038	3L_14642038_SNP [dm3] 3L_14648938_SNP [dm6]	T	A	4.994e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17993103	3R_17993103_SNP [dm3] 3R_22167381_SNP [dm6]	G	C	5.257e^-5	0.885	INTRON SKIP	TF binding site mE1_TFBS_Kr
2L	9014159	2L_9014159_SNP [dm3] 2L_9014159_SNP [dm6]	C	T	5.346e^-5	0.885	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24316014	3R_24316014_SNP [dm3] 3R_28490292_SNP [dm6]	T	A	5.393e^-5	0.885	INTRON Dhc98D
2R	10687961	2R_10687961_DEL [dm3] 2R_14800456_DEL [dm6]	GG	G	5.404e^-5	0.885	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	16738656	3R_16738656_INS [dm3] 3R_20912934_INS [dm6]	T	TCT	5.440e^-5	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5935829	3L_5935829_SNP [dm3] 3L_5942729_SNP [dm6]	G	A	5.452e^-5	0.885	INTRON CG33993
3L	16433911	3L_16433911_SNP [dm3] 3L_16440811_SNP [dm6]	A	T	5.505e^-5	0.885	INTRON CG33158 & 1 other
3L	16433660	3L_16433660_SNP [dm3] 3L_16440560_SNP [dm6]	A	C	5.602e^-5	0.885	INTRON CG33158 & 1 other
3L	7904156	3L_7904156_SNP [dm3] 3L_7911056_SNP [dm6]	G	T	5.765e^-5	0.885	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9986084	2L_9986084_SNP [dm3] 2L_9986084_SNP [dm6]	G	A	5.773e^-5	0.885	INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	6470230	2R_6470230_SNP [dm3] 2R_10582725_SNP [dm6]	T	A	5.982e^-5	0.885	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	6470328	2R_6470328_SNP [dm3] 2R_10582823_SNP [dm6]	C	T	5.982e^-5	0.885	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	6470331	2R_6470331_SNP [dm3] 2R_10582826_SNP [dm6]	A	G	5.982e^-5	0.885	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	6470398	2R_6470398_DEL [dm3] 2R_10582893_DEL [dm6]	TT	T	5.982e^-5	0.885	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	6470408	2R_6470408_SNP [dm3] 2R_10582903_SNP [dm6]	T	A	5.982e^-5	0.885	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	6320110	X_6320110_SNP [dm3] X_6426077_SNP [dm6]	T	A	5.984e^-5	0.885	INTRON CG42340
3R	16739498	3R_16739498_SNP [dm3] 3R_20913776_SNP [dm6]	T	C	6.001e^-5	0.885	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17955756	X_17955756_DEL [dm3] X_18061723_DEL [dm6]	CCCGC	C	6.139e^-5	0.885	INTRON Sh
3R	18178125	3R_18178125_SNP [dm3] 3R_22352403_SNP [dm6]	C	T	6.149e^-5	0.885	NON_SYNONYMOUS_CODING rdhB
2L	5249270	2L_5249270_SNP [dm3] 2L_5249270_SNP [dm6]	T	A	6.187e^-5	0.885	INTRON tkv	TF binding site mE1_TFBS_cnc
3L	14642130	3L_14642130_INS [dm3] 3L_14649030_INS [dm6]	T	TTGT	6.281e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13626819	3R_13626819_SNP [dm3] 3R_17801097_SNP [dm6]	G	T	6.287e^-5	0.885	DOWNSTREAM CG17806 INTRON CG17803
3L	14642070	3L_14642070_SNP [dm3] 3L_14648970_SNP [dm6]	C	T	6.344e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642095	3L_14642095_SNP [dm3] 3L_14648995_SNP [dm6]	T	A	6.344e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642098	3L_14642098_SNP [dm3] 3L_14648998_SNP [dm6]	A	T	6.344e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642110	3L_14642110_SNP [dm3] 3L_14649010_SNP [dm6]	T	C	6.344e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642039	3L_14642039_SNP [dm3] 3L_14648939_SNP [dm6]	T	G	6.386e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642051	3L_14642051_SNP [dm3] 3L_14648951_SNP [dm6]	T	C	6.386e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7986614	3L_7986614_SNP [dm3] 3L_7993514_SNP [dm6]	C	G	6.745e^-5	0.885	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	16433825	3L_16433825_SNP [dm3] 3L_16440725_SNP [dm6]	A	G	6.796e^-5	0.885	INTRON CG33158 & 1 other
2R	8093885	2R_8093885_SNP [dm3] 2R_12206380_SNP [dm6]	T	G	6.801e^-5	0.885	EXON CR45276	TF binding site mE1_TFBS_cad
3R	12426591	3R_12426591_SNP [dm3] 3R_16600869_SNP [dm6]	C	A	6.867e^-5	0.885	INTRON CG10345
2L	9507277	2L_9507277_SNP [dm3] 2L_9507277_SNP [dm6]	G	T	6.987e^-5	0.885	INTRON CG33298
3R	19381503	3R_19381503_SNP [dm3] 3R_23555781_SNP [dm6]	G	A	7.149e^-5	0.885	NON_SYNONYMOUS_CODING CG10164
3R	25365840	3R_25365840_SNP [dm3] 3R_29540118_SNP [dm6]	T	C	7.389e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9151836	3R_9151836_SNP [dm3] 3R_13326114_SNP [dm6]	A	G	7.490e^-5	0.885	INTERGENIC
3L	2622023	3L_2622023_INS [dm3] 3L_2622023_INS [dm6]	A	AGGTCTCA	7.538e^-5	0.885	INTRON Pxn
2R	6508615	2R_6508615_SNP [dm3] 2R_10621110_SNP [dm6]	A	G	7.777e^-5	0.885	INTRON CG11883
3R	11140143	3R_11140143_SNP [dm3] 3R_15314421_SNP [dm6]	T	C	7.777e^-5	0.885	INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7101775	2L_7101775_SNP [dm3] 2L_7101775_SNP [dm6]	C	T	7.797e^-5	0.885	INTRON Pvf3
3R	16704328	3R_16704328_SNP [dm3] 3R_20878606_SNP [dm6]	T	A	7.908e^-5	0.885	DOWNSTREAM TotZ EXON CR44048
3R	11619418	3R_11619418_SNP [dm3] 3R_15793696_SNP [dm6]	C	T	7.949e^-5	0.885	UPSTREAM nsl1 DOWNSTREAM Acyp2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	4427850	2L_4427850_SNP [dm3] 2L_4427850_SNP [dm6]	A	G	8.114e^-5	0.885	INTRON CG15431
X	6804574	X_6804574_DEL [dm3] X_6910541_DEL [dm6]	TT	T	8.182e^-5	0.885	INTRON CG14431
3R	24314572	3R_24314572_SNP [dm3] 3R_28488850_SNP [dm6]	T	C	8.201e^-5	0.885	INTRON Dhc98D
3R	25015447	3R_25015447_SNP [dm3] 3R_29189725_SNP [dm6]	G	T	8.258e^-5	0.885	INTRON CG14509
3L	1629983	3L_1629983_SNP [dm3] 3L_1629983_SNP [dm6]	T	C	8.269e^-5	0.885	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14352150	2L_14352150_SNP [dm3] 2L_14352150_SNP [dm6]	A	C	8.496e^-5	0.885	UTR_5_PRIME CG43052 UPSTREAM l_2_34Fc DOWNSTREAM l_2_34Fd
3L	14642089	3L_14642089_SNP [dm3] 3L_14648989_SNP [dm6]	A	T	8.668e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10312367	3R_10312367_SNP [dm3] 3R_14486645_SNP [dm6]	T	C	8.792e^-5	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18249664	X_18249664_INS [dm3] X_18355631_INS [dm6]	G	GTAGGCGG	8.911e^-5	0.885	INTRON CG6123
3R	24220172	3R_24220172_SNP [dm3] 3R_28394450_SNP [dm6]	G	A	8.958e^-5	0.885	INTERGENIC
3L	14642109	3L_14642109_SNP [dm3] 3L_14649009_SNP [dm6]	A	T	9.243e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642171	3L_14642171_SNP [dm3] 3L_14649071_SNP [dm6]	A	T	9.360e^-5	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	17250611	2L_17250611_SNP [dm3] 2L_17250611_SNP [dm6]	C	T	9.401e^-5	0.885	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	1196368	2L_1196368_SNP [dm3] 2L_1196368_SNP [dm6]	C	T	9.436e^-5	0.885	SYNONYMOUS_CODING CG5001
2R	11471496	2R_11471496_SNP [dm3] 2R_15583991_SNP [dm6]	T	A	9.481e^-5	0.885	INTERGENIC
3R	25834938	3R_25834938_SNP [dm3] 3R_30009216_SNP [dm6]	G	A	9.557e^-5	0.885	UPSTREAM CG7912 INTRON Nlp
3R	15456508	3R_15456508_SNP [dm3] 3R_19630786_SNP [dm6]	T	C	9.566e^-5	0.885	INTRON CG6231
3L	16433835	3L_16433835_SNP [dm3] 3L_16440735_SNP [dm6]	G	A	9.947e^-5	0.885	INTRON CG33158 & 1 other
3L	16433661	3L_16433661_SNP [dm3] 3L_16440561_SNP [dm6]	T	A	1.004e^-4	0.885	INTRON CG33158 & 1 other
3L	16433664	3L_16433664_SNP [dm3] 3L_16440564_SNP [dm6]	T	G	1.004e^-4	0.885	INTRON CG33158 & 1 other
3L	16433665	3L_16433665_SNP [dm3] 3L_16440565_SNP [dm6]	A	G	1.004e^-4	0.885	INTRON CG33158 & 1 other
3L	16433667	3L_16433667_DEL [dm3] 3L_16440567_DEL [dm6]	GTCATCATC	G	1.004e^-4	0.885	INTRON CG33158 & 1 other
2R	12456846	2R_12456846_SNP [dm3] 2R_16569341_SNP [dm6]	G	A	1.047e^-4	0.885	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2350486	2L_2350486_SNP [dm3] 2L_2350486_SNP [dm6]	T	C	1.049e^-4	0.885	INTRON CG9967 & 1 other
2R	8093873	2R_8093873_SNP [dm3] 2R_12206368_SNP [dm6]	C	A	1.050e^-4	0.885	EXON CR45276	TF binding site mE1_TFBS_cad
2L	15740889	2L_15740889_SNP [dm3] 2L_15740889_SNP [dm6]	T	A	1.052e^-4	0.885	UTR_5_PRIME CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5372509	2L_5372509_SNP [dm3] 2L_5372509_SNP [dm6]	T	C	1.079e^-4	0.885	INTERGENIC
X	11151575	X_11151575_SNP [dm3] X_11257542_SNP [dm6]	T	C	1.103e^-4	0.885	INTRON CG44422
3R	16738762	3R_16738762_SNP [dm3] 3R_20913040_SNP [dm6]	T	A	1.128e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12345223	2R_12345223_INS [dm3] 2R_16457718_INS [dm6]	G	GG	1.131e^-4	0.885	INTERGENIC
3R	24816235	3R_24816235_SNP [dm3] 3R_28990513_SNP [dm6]	T	C	1.150e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	6536230	2L_6536230_SNP [dm3] 2L_6536230_SNP [dm6]	T	A	1.159e^-4	0.885	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	26974976	3R_26974976_SNP [dm3] 3R_31149254_SNP [dm6]	C	T	1.173e^-4	0.885	INTRON Gycbeta100B
X	6537601	X_6537601_SNP [dm3] X_6643568_SNP [dm6]	G	A	1.184e^-4	0.885	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19478211	2R_19478211_SNP [dm3] 2R_23590688_SNP [dm6]	A	C	1.191e^-4	0.885	INTRON apt
3R	16738855	3R_16738855_SNP [dm3] 3R_20913133_SNP [dm6]	G	T	1.197e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med
2R	7310122	2R_7310122_SNP [dm3] 2R_11422617_SNP [dm6]	G	C	1.197e^-4	0.885	INTRON Drip
2R	12366379	2R_12366379_SNP [dm3] 2R_16478874_SNP [dm6]	T	C	1.209e^-4	0.885	INTERGENIC
2L	11971745	2L_11971745_SNP [dm3] 2L_11971745_SNP [dm6]	C	T	1.230e^-4	0.885	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11971906	2L_11971906_SNP [dm3] 2L_11971906_SNP [dm6]	A	T	1.230e^-4	0.885	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	15870162	3L_15870162_SNP [dm3] 3L_15877062_SNP [dm6]	T	G	1.240e^-4	0.885	UPSTREAM CR44051 INTRON pHCl
3R	24327835	3R_24327835_SNP [dm3] 3R_28502113_SNP [dm6]	C	T	1.240e^-4	0.885	INTRON Dhc98D
3L	14641921	3L_14641921_SNP [dm3] 3L_14648821_SNP [dm6]	A	G	1.247e^-4	0.885	INTRON dlp	TF binding site mE1_TFBS_HSA
3L	7984136	3L_7984136_SNP [dm3] 3L_7991036_SNP [dm6]	T	C	1.249e^-4	0.885	INTRON nmo	TF binding site mE1_TFBS_cnc
X	9449491	X_9449491_SNP [dm3] X_9555458_SNP [dm6]	G	C	1.252e^-4	0.885	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl
X	12953328	X_12953328_SNP [dm3] X_13059295_SNP [dm6]	T	A	1.256e^-4	0.885	INTRON rad
3R	7745399	3R_7745399_INS [dm3] 3R_11919677_INS [dm6]	A	AA	1.263e^-4	0.885	INTRON Cad87A
3L	16433688	3L_16433688_SNP [dm3] 3L_16440588_SNP [dm6]	A	G	1.266e^-4	0.885	INTRON CG33158 & 1 other
3R	16452801	3R_16452801_SNP [dm3] 3R_20627079_SNP [dm6]	C	G	1.267e^-4	0.885	UTR_3_PRIME H
2L	12447031	2L_12447031_SNP [dm3] 2L_12447031_SNP [dm6]	C	T	1.285e^-4	0.885	SYNONYMOUS_CODING CG5421
2R	8622612	2R_8622612_SNP [dm3] 2R_12735107_SNP [dm6]	C	T	1.292e^-4	0.885	SYNONYMOUS_CODING CG42663
X	6396781	X_6396781_SNP [dm3] X_6502748_SNP [dm6]	A	T	1.314e^-4	0.885	INTRON CG42340
3L	9088648	3L_9088648_DEL [dm3] 3L_9095548_DEL [dm6]	AAGA	A	1.334e^-4	0.885	DOWNSTREAM CG32032 INTERGENIC
3R	24289988	3R_24289988_SNP [dm3] 3R_28464266_SNP [dm6]	C	T	1.334e^-4	0.885	INTRON beat-VI
2L	4902338	2L_4902338_SNP [dm3] 2L_4902338_SNP [dm6]	T	C	1.339e^-4	0.885	SYNONYMOUS_CODING CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17844078	3R_17844078_SNP [dm3] 3R_22018356_SNP [dm6]	G	A	1.349e^-4	0.885	INTRON CG6439	TF binding site BDTNP1_TFBS_dl
3R	17844082	3R_17844082_SNP [dm3] 3R_22018360_SNP [dm6]	A	C	1.349e^-4	0.885	INTRON CG6439	TF binding site BDTNP1_TFBS_dl
3R	17844083	3R_17844083_SNP [dm3] 3R_22018361_SNP [dm6]	G	A	1.349e^-4	0.885	INTRON CG6439	TF binding site BDTNP1_TFBS_dl
2L	1460951	2L_1460951_SNP [dm3] 2L_1460951_SNP [dm6]	T	A	1.361e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1004576	3L_1004576_SNP [dm3] 3L_1004576_SNP [dm6]	G	A	1.362e^-4	0.885	INTRON trio
3L	14642063	3L_14642063_SNP [dm3] 3L_14648963_SNP [dm6]	T	G	1.367e^-4	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14135128	3R_14135128_SNP [dm3] 3R_18309406_SNP [dm6]	T	A	1.371e^-4	0.885	START_GAINED PKD UTR_5_PRIME PKD
3L	9088478	3L_9088478_SNP [dm3] 3L_9095378_SNP [dm6]	G	C	1.372e^-4	0.885	DOWNSTREAM CG32032 INTERGENIC
2L	6887132	2L_6887132_SNP [dm3] 2L_6887132_SNP [dm6]	A	G	1.387e^-4	0.885	INTRON Nlg2
2L	6887142	2L_6887142_SNP [dm3] 2L_6887142_SNP [dm6]	A	C	1.387e^-4	0.885	INTRON Nlg2
2R	19091722	2R_19091722_SNP [dm3] 2R_23204199_SNP [dm6]	C	A	1.413e^-4	0.885	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	10510194	2R_10510194_SNP [dm3] 2R_14622689_SNP [dm6]	A	G	1.421e^-4	0.885	UPSTREAM snoRNA:Me18S-G1952 & 3 others DOWNSTREAM snoRNA:Me18S-C1366 & 3 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	7303305	3R_7303305_SNP [dm3] 3R_11477583_SNP [dm6]	T	G	1.423e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10718741	3L_10718741_DEL [dm3] 3L_10725641_DEL [dm6]	TT	T	1.446e^-4	0.885	INTERGENIC
3R	23922182	3R_23922182_SNP [dm3] 3R_28096460_SNP [dm6]	A	T	1.456e^-4	0.885	INTERGENIC
2R	6470393	2R_6470393_SNP [dm3] 2R_10582888_SNP [dm6]	A	T	1.467e^-4	0.885	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	10496645	3L_10496645_SNP [dm3] 3L_10503545_SNP [dm6]	G	A	1.474e^-4	0.885	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9790622	X_9790622_SNP [dm3] X_9896589_SNP [dm6]	G	A	1.475e^-4	0.885	INTRON CG15249
3R	13666771	3R_13666771_SNP [dm3] 3R_17841049_SNP [dm6]	A	G	1.489e^-4	0.885	INTRON tinc
2R	13993156	2R_13993156_SNP [dm3] 2R_18105651_SNP [dm6]	T	G	1.504e^-4	0.885	INTRON CG5756
2L	4427843	2L_4427843_SNP [dm3] 2L_4427843_SNP [dm6]	G	A	1.513e^-4	0.885	INTRON CG15431
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	1.531e^-4	0.885	INTRON kek5
2R	15928199	2R_15928199_SNP [dm3] 2R_20040694_SNP [dm6]	T	C	1.531e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	19797987	2L_19797987_SNP [dm3] 2L_19797987_SNP [dm6]	A	C	1.534e^-4	0.885	INTRON sick
2L	19824797	2L_19824797_SNP [dm3] 2L_19824797_SNP [dm6]	C	T	1.540e^-4	0.885	INTRON sick
3L	10262594	3L_10262594_SNP [dm3] 3L_10269494_SNP [dm6]	A	C	1.555e^-4	0.885	EXON CR45242	regulatory region REDfly_CRMs
3L	7908820	3L_7908820_SNP [dm3] 3L_7915720_SNP [dm6]	A	G	1.613e^-4	0.885	SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26974822	3R_26974822_SNP [dm3] 3R_31149100_SNP [dm6]	A	T	1.616e^-4	0.885	INTRON Gycbeta100B
2L	5372497	2L_5372497_DEL [dm3] 2L_5372497_DEL [dm6]	CAGAGCCG	C	1.621e^-4	0.885	INTERGENIC
3L	9081917	3L_9081917_SNP [dm3] 3L_9088817_SNP [dm6]	C	T	1.627e^-4	0.885	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	9081928	3L_9081928_SNP [dm3] 3L_9088828_SNP [dm6]	A	C	1.627e^-4	0.885	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	9082021	3L_9082021_SNP [dm3] 3L_9088921_SNP [dm6]	A	T	1.627e^-4	0.885	SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad
2L	6887031	2L_6887031_SNP [dm3] 2L_6887031_SNP [dm6]	A	T	1.647e^-4	0.885	INTRON Nlg2	TF binding site BDTNP1_TFBS_twi
2L	6887035	2L_6887035_SNP [dm3] 2L_6887035_SNP [dm6]	C	T	1.647e^-4	0.885	INTRON Nlg2	TF binding site BDTNP1_TFBS_twi
2L	6887070	2L_6887070_SNP [dm3] 2L_6887070_SNP [dm6]	A	G	1.647e^-4	0.885	INTRON Nlg2
2R	20188889	2R_20188889_SNP [dm3] 2R_24301366_SNP [dm6]	T	G	1.664e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11874867	2R_11874867_SNP [dm3] 2R_15987362_SNP [dm6]	T	G	1.667e^-4	0.885	UPSTREAM CR45021 & 1 other INTRON Strn-Mlck
X	6593783	X_6593783_SNP [dm3] X_6699750_SNP [dm6]	T	A	1.667e^-4	0.885	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6593967	X_6593967_SNP [dm3] X_6699934_SNP [dm6]	G	A	1.667e^-4	0.885	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1068382	2L_1068382_SNP [dm3] 2L_1068382_SNP [dm6]	G	A	1.668e^-4	0.885	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11471572	2R_11471572_SNP [dm3] 2R_15584067_SNP [dm6]	G	C	1.669e^-4	0.885	INTERGENIC
2R	11471586	2R_11471586_SNP [dm3] 2R_15584081_SNP [dm6]	A	G	1.669e^-4	0.885	INTERGENIC
2R	11471591	2R_11471591_SNP [dm3] 2R_15584086_SNP [dm6]	A	T	1.669e^-4	0.885	INTERGENIC
2R	11471609	2R_11471609_SNP [dm3] 2R_15584104_SNP [dm6]	T	C	1.669e^-4	0.885	INTERGENIC
2L	12355378	2L_12355378_SNP [dm3] 2L_12355378_SNP [dm6]	A	C	1.731e^-4	0.885	INTRON bru-2
3L	1642861	3L_1642861_SNP [dm3] 3L_1642861_SNP [dm6]	G	A	1.737e^-4	0.885	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20534979	X_20534979_INS [dm3] X_20663952_INS [dm6]	G	GGTCG	1.758e^-4	0.885	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15201608	2R_15201608_SNP [dm3] 2R_19314103_SNP [dm6]	A	T	1.774e^-4	0.885	INTRON Rgk1	TF binding site BDTNP1_TFBS_twi
2R	17102205	2R_17102205_SNP [dm3] 2R_21214700_SNP [dm6]	A	G	1.774e^-4	0.885	DOWNSTREAM CG15661 INTRON CG4302
2R	17102221	2R_17102221_SNP [dm3] 2R_21214716_SNP [dm6]	T	C	1.774e^-4	0.885	DOWNSTREAM CG15661 INTRON CG4302
2R	17102222	2R_17102222_SNP [dm3] 2R_21214717_SNP [dm6]	C	T	1.774e^-4	0.885	DOWNSTREAM CG15661 INTRON CG4302
2R	18071531	2R_18071531_SNP [dm3] 2R_22184026_SNP [dm6]	G	A	1.774e^-4	0.885	SYNONYMOUS_CODING MED16	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19089288	3R_19089288_SNP [dm3] 3R_23263566_SNP [dm6]	A	T	1.774e^-4	0.885	UTR_3_PRIME orb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17560453	2R_17560453_SNP [dm3] 2R_21672948_SNP [dm6]	T	C	1.779e^-4	0.885	DOWNSTREAM CG15676 INTERGENIC
3R	9196495	3R_9196495_SNP [dm3] 3R_13370773_SNP [dm6]	A	G	1.787e^-4	0.885	DOWNSTREAM CheA87a INTRON Lip3
3L	1642205	3L_1642205_SNP [dm3] 3L_1642205_SNP [dm6]	C	T	1.791e^-4	0.885	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	19388822	3L_19388822_SNP [dm3] 3L_19395722_SNP [dm6]	C	G	1.794e^-4	0.885	INTRON CG32206
2L	12355507	2L_12355507_SNP [dm3] 2L_12355507_SNP [dm6]	A	T	1.807e^-4	0.885	UPSTREAM CG17010 INTRON bru-2
3R	9151242	3R_9151242_SNP [dm3] 3R_13325520_SNP [dm6]	T	A	1.815e^-4	0.885	INTERGENIC
2L	12446867	2L_12446867_SNP [dm3] 2L_12446867_SNP [dm6]	T	A	1.817e^-4	0.885	NON_SYNONYMOUS_CODING CG5421 UPSTREAM Oatp33Ea
3L	14642827	3L_14642827_SNP [dm3] 3L_14649727_SNP [dm6]	G	T	1.826e^-4	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	4747172	X_4747172_DEL [dm3] X_4853139_DEL [dm6]	AGA	A	1.840e^-4	0.885	INTRON CG42594	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5456162	2L_5456162_SNP [dm3] 2L_5456162_SNP [dm6]	C	T	1.852e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16082234	X_16082234_SNP [dm3] X_16188201_SNP [dm6]	T	C	1.857e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	8609721	3L_8609721_SNP [dm3] 3L_8616621_SNP [dm6]	G	C	1.893e^-4	0.885	UTR_3_PRIME CG6282 UPSTREAM S-Lap1
2L	3191688	2L_3191688_SNP [dm3] 2L_3191688_SNP [dm6]	C	T	1.895e^-4	0.885	INTRON CG34393
X	12243303	X_12243303_SNP [dm3] X_12349270_SNP [dm6]	T	G	1.914e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13650043	3L_13650043_SNP [dm3] 3L_13656943_SNP [dm6]	T	C	1.917e^-4	0.885	INTRON bru-3	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2610341	3L_2610341_SNP [dm3] 3L_2610341_SNP [dm6]	G	A	1.924e^-4	0.885	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2677101	X_2677101_SNP [dm3] X_2783068_SNP [dm6]	G	A	1.961e^-4	0.885	UTR_3_PRIME CG32795 INTRON kirre
X	6505360	X_6505360_SNP [dm3] X_6611327_SNP [dm6]	A	G	1.969e^-4	0.885	INTRON pigs
3R	17993102	3R_17993102_SNP [dm3] 3R_22167380_SNP [dm6]	T	C	1.977e^-4	0.885	INTRON SKIP	TF binding site mE1_TFBS_Kr
2L	4640210	2L_4640210_SNP [dm3] 2L_4640210_SNP [dm6]	C	T	1.979e^-4	0.885	INTERGENIC
2R	14472546	2R_14472546_SNP [dm3] 2R_18585041_SNP [dm6]	T	A	1.982e^-4	0.885	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
3R	27206827	3R_27206827_SNP [dm3] 3R_31381105_SNP [dm6]	T	A	1.990e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24816190	3R_24816190_SNP [dm3] 3R_28990468_SNP [dm6]	G	C	1.993e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	10862630	3L_10862630_SNP [dm3] 3L_10869530_SNP [dm6]	A	T	1.998e^-4	0.885	UPSTREAM tna INTRON tna
3L	9088633	3L_9088633_SNP [dm3] 3L_9095533_SNP [dm6]	A	T	2.014e^-4	0.885	DOWNSTREAM CG32032 INTERGENIC
3L	4587438	3L_4587438_SNP [dm3] 3L_4587438_SNP [dm6]	T	C	2.024e^-4	0.885	INTRON CG42540
X	2705446	X_2705446_SNP [dm3] X_2811413_SNP [dm6]	G	A	2.030e^-4	0.885	DOWNSTREAM CG12498 INTRON kirre
3R	19381435	3R_19381435_SNP [dm3] 3R_23555713_SNP [dm6]	T	G	2.031e^-4	0.885	NON_SYNONYMOUS_CODING CG10164
2L	14555374	2L_14555374_SNP [dm3] 2L_14555374_SNP [dm6]	G	A	2.045e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	14555424	2L_14555424_SNP [dm3] 2L_14555424_SNP [dm6]	G	C	2.045e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	1051015	2L_1051015_SNP [dm3] 2L_1051015_SNP [dm6]	T	A	2.068e^-4	0.885	UTR_3_PRIME S DOWNSTREAM S
2L	5715797	2L_5715797_SNP [dm3] 2L_5715797_SNP [dm6]	G	C	2.070e^-4	0.885	SYNONYMOUS_CODING CG14007 UPSTREAM CG34011 EXON CR44818
3R	16738847	3R_16738847_SNP [dm3] 3R_20913125_SNP [dm6]	G	T	2.074e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med
3R	7303269	3R_7303269_SNP [dm3] 3R_11477547_SNP [dm6]	C	A	2.109e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3899950	X_3899950_SNP [dm3] X_4005917_SNP [dm6]	A	G	2.112e^-4	0.885	INTERGENIC
2R	9930184	2R_9930184_SNP [dm3] 2R_14042679_SNP [dm6]	T	A	2.114e^-4	0.885	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9930225	2R_9930225_SNP [dm3] 2R_14042720_SNP [dm6]	A	T	2.114e^-4	0.885	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9930232	2R_9930232_SNP [dm3] 2R_14042727_SNP [dm6]	G	T	2.114e^-4	0.885	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	10220846	3L_10220846_SNP [dm3] 3L_10227746_SNP [dm6]	G	A	2.126e^-4	0.885	INTERGENIC
3R	13690663	3R_13690663_SNP [dm3] 3R_17864941_SNP [dm6]	A	T	2.134e^-4	0.885	NON_SYNONYMOUS_CODING tinc
3R	24613276	3R_24613276_SNP [dm3] 3R_28787554_SNP [dm6]	T	C	2.153e^-4	0.885	INTERGENIC
3R	13591362	3R_13591362_SNP [dm3] 3R_17765640_SNP [dm6]	G	A	2.163e^-4	0.885	INTERGENIC
2L	7104425	2L_7104425_SNP [dm3] 2L_7104425_SNP [dm6]	T	G	2.180e^-4	0.885	INTRON Pvf3
X	14301489	X_14301489_SNP [dm3] X_14407456_SNP [dm6]	T	G	2.185e^-4	0.885	INTRON dpr8
X	14301507	X_14301507_SNP [dm3] X_14407474_SNP [dm6]	G	A	2.185e^-4	0.885	INTRON dpr8
2L	3046926	2L_3046926_SNP [dm3] 2L_3046926_SNP [dm6]	A	T	2.206e^-4	0.885	DOWNSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12842065	3L_12842065_SNP [dm3] 3L_12848965_SNP [dm6]	A	C	2.240e^-4	0.885	SYNONYMOUS_CODING CG10948	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7902301	3L_7902301_SNP [dm3] 3L_7909201_SNP [dm6]	A	G	2.252e^-4	0.885	SYNONYMOUS_CODING pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4341073	3L_4341073_SNP [dm3] 3L_4341073_SNP [dm6]	A	G	2.256e^-4	0.885	INTRON Cip4
2R	17102365	2R_17102365_SNP [dm3] 2R_21214860_SNP [dm6]	T	G	2.265e^-4	0.885	DOWNSTREAM CG15661 INTRON CG4302
2R	10511198	2R_10511198_INS [dm3] 2R_14623693_INS [dm6]	C	ACA	2.281e^-4	0.885	UPSTREAM snoRNA:Me28S-G2703b & 2 others DOWNSTREAM snoRNA:Me18S-G1952 & 3 others EXON Uhg5	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	13949629	3L_13949629_SNP [dm3] 3L_13956529_SNP [dm6]	C	T	2.284e^-4	0.885	INTRON CG32137
2L	5476379	2L_5476379_SNP [dm3] 2L_5476379_SNP [dm6]	C	T	2.296e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	1192482	3L_1192482_SNP [dm3] 3L_1192482_SNP [dm6]	T	A	2.304e^-4	0.885	INTRON Trh	TF binding site mE1_TFBS_chinmo
3L	1192494	3L_1192494_SNP [dm3] 3L_1192494_SNP [dm6]	C	T	2.304e^-4	0.885	INTRON Trh	TF binding site mE1_TFBS_chinmo
X	18213027	X_18213027_SNP [dm3] X_18318994_SNP [dm6]	T	G	2.325e^-4	0.885	INTRON CG6023
3R	18581683	3R_18581683_SNP [dm3] 3R_22755961_SNP [dm6]	C	T	2.345e^-4	0.885	INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_Trl
2R	16463767	2R_16463767_SNP [dm3] 2R_20576262_SNP [dm6]	T	G	2.354e^-4	0.885	INTRON qsm
2R	16463777	2R_16463777_DEL [dm3] 2R_20576272_DEL [dm6]	CCCCCAATC	C	2.354e^-4	0.885	INTRON qsm
3R	12644778	3R_12644778_SNP [dm3] 3R_16819056_SNP [dm6]	G	A	2.360e^-4	0.885	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	7804462	X_7804462_INS [dm3] X_7910429_INS [dm6]	C	CTC	2.382e^-4	0.885	INTRON CG1444
3R	26974876	3R_26974876_SNP [dm3] 3R_31149154_SNP [dm6]	A	T	2.394e^-4	0.885	INTRON Gycbeta100B
2R	19091705	2R_19091705_SNP [dm3] 2R_23204182_SNP [dm6]	G	A	2.408e^-4	0.885	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	7631946	2L_7631946_SNP [dm3] 2L_7631946_SNP [dm6]	T	A	2.409e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	7834801	3L_7834801_SNP [dm3] 3L_7841701_SNP [dm6]	G	A	2.438e^-4	0.885	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	26021142	3R_26021142_SNP [dm3] 3R_30195420_SNP [dm6]	A	G	2.447e^-4	0.885	DOWNSTREAM CG9743 INTRON CG15531
2L	1279311	2L_1279311_SNP [dm3] 2L_1279311_SNP [dm6]	T	C	2.473e^-4	0.885	INTRON robo3
2L	6907139	2L_6907139_SNP [dm3] 2L_6907139_SNP [dm6]	G	A	2.480e^-4	0.885	UPSTREAM Rat1 DOWNSTREAM Nlg2 INTRON CG13773
3R	16704589	3R_16704589_SNP [dm3] 3R_20878867_SNP [dm6]	C	T	2.491e^-4	0.885	DOWNSTREAM TotZ EXON CR44048
3L	15870867	3L_15870867_SNP [dm3] 3L_15877767_SNP [dm6]	A	G	2.494e^-4	0.885	INTRON pHCl
3L	1642730	3L_1642730_SNP [dm3] 3L_1642730_SNP [dm6]	A	G	2.499e^-4	0.885	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1390461	3L_1390461_SNP [dm3] 3L_1390461_SNP [dm6]	A	T	2.511e^-4	0.885	INTRON Ptp61F	TF binding site mE1_TFBS_cad
X	5115100	X_5115100_SNP [dm3] X_5221067_SNP [dm6]	A	C	2.522e^-4	0.885	INTRON CG15465 & 1 other
2L	6907110	2L_6907110_SNP [dm3] 2L_6907110_SNP [dm6]	A	G	2.527e^-4	0.885	SYNONYMOUS_CODING CG13773 UPSTREAM Rat1 DOWNSTREAM Nlg2
3R	13626942	3R_13626942_SNP [dm3] 3R_17801220_SNP [dm6]	T	A	2.541e^-4	0.885	UTR_5_PRIME CG17803 DOWNSTREAM CG17806
3L	13949480	3L_13949480_SNP [dm3] 3L_13956380_SNP [dm6]	C	T	2.552e^-4	0.885	INTRON CG32137
3L	22786865	3L_22786865_SNP [dm3] 3L_22793765_SNP [dm6]	T	C	2.574e^-4	0.885	UTR_3_PRIME jim
X	14382798	X_14382798_SNP [dm3] X_14488765_SNP [dm6]	A	G	2.607e^-4	0.885	INTERGENIC
2L	15347661	2L_15347661_SNP [dm3] 2L_15347661_SNP [dm6]	G	C	2.650e^-4	0.885	INTERGENIC
2R	12456810	2R_12456810_SNP [dm3] 2R_16569305_SNP [dm6]	A	G	2.671e^-4	0.885	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1083669	2L_1083669_SNP [dm3] 2L_1083669_SNP [dm6]	A	G	2.694e^-4	0.885	UTR_3_PRIME Atg4a & 1 other DOWNSTREAM Atg4a
2L	4469087	2L_4469087_SNP [dm3] 2L_4469087_SNP [dm6]	C	A	2.733e^-4	0.885	SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1650899	2L_1650899_DEL [dm3] 2L_1650899_DEL [dm6]	CC	C	2.739e^-4	0.885	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17102345	2R_17102345_INS [dm3] 2R_21214840_INS [dm6]	C	CGGTCGGTTTATTAAC...	2.741e^-4	0.885	DOWNSTREAM CG15661 INTRON CG4302
3R	27249859	3R_27249859_SNP [dm3] 3R_31424137_SNP [dm6]	G	A	2.741e^-4	0.885	INTRON Gprk2
3R	26119437	3R_26119437_SNP [dm3] 3R_30293715_SNP [dm6]	A	G	2.749e^-4	0.885	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26119443	3R_26119443_SNP [dm3] 3R_30293721_SNP [dm6]	A	G	2.749e^-4	0.885	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23908833	3R_23908833_SNP [dm3] 3R_28083111_SNP [dm6]	A	T	2.761e^-4	0.885	INTRON CG34362
3R	26664274	3R_26664274_SNP [dm3] 3R_30838552_SNP [dm6]	G	A	2.783e^-4	0.885	SYNONYMOUS_CODING CG15544
3R	16739142	3R_16739142_SNP [dm3] 3R_20913420_SNP [dm6]	C	T	2.790e^-4	0.885	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8309389	2L_8309389_SNP [dm3] 2L_8309389_SNP [dm6]	C	A	2.792e^-4	0.885	SYNONYMOUS_CODING CG7818 DOWNSTREAM CG7810	TF binding site mE1_TFBS_sens
X	14382570	X_14382570_SNP [dm3] X_14488537_SNP [dm6]	T	A	2.811e^-4	0.885	INTERGENIC
2R	6525332	2R_6525332_SNP [dm3] 2R_10637827_SNP [dm6]	C	A	2.817e^-4	0.885	INTRON CG11883	TF binding site mE1_TFBS_cad
2R	6525343	2R_6525343_SNP [dm3] 2R_10637838_SNP [dm6]	A	T	2.817e^-4	0.885	INTRON CG11883	TF binding site mE1_TFBS_cad
3L	4211912	3L_4211912_SNP [dm3] 3L_4211912_SNP [dm6]	A	T	2.818e^-4	0.885	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
2R	18725178	2R_18725178_SNP [dm3] 2R_22837655_SNP [dm6]	C	T	2.820e^-4	0.885	DOWNSTREAM CG12490 INTRON CG9825
3L	14642829	3L_14642829_DEL [dm3] 3L_14649729_DEL [dm6]	GA	G	2.826e^-4	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	16738916	3R_16738916_SNP [dm3] 3R_20913194_SNP [dm6]	A	T	2.854e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	24314637	3R_24314637_SNP [dm3] 3R_28488915_SNP [dm6]	T	C	2.860e^-4	0.885	INTRON Dhc98D
2R	9930296	2R_9930296_SNP [dm3] 2R_14042791_SNP [dm6]	T	A	2.864e^-4	0.885	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	16891960	3L_16891960_SNP [dm3] 3L_16898860_SNP [dm6]	T	C	2.866e^-4	0.885	UPSTREAM Lmpt INTRON Lmpt
3R	25015666	3R_25015666_SNP [dm3] 3R_29189944_SNP [dm6]	T	G	2.874e^-4	0.885	INTRON CG14509
2L	19825441	2L_19825441_SNP [dm3] 2L_19825441_SNP [dm6]	C	T	2.884e^-4	0.885	INTRON sick
X	18170401	X_18170401_SNP [dm3] X_18276368_SNP [dm6]	A	G	2.888e^-4	0.885	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1279284	2L_1279284_SNP [dm3] 2L_1279284_SNP [dm6]	T	G	2.904e^-4	0.885	INTRON robo3
3R	5062512	3R_5062512_INS [dm3] 3R_9236790_INS [dm6]	T	TT	2.944e^-4	0.885	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17853263	3R_17853263_SNP [dm3] 3R_22027541_SNP [dm6]	C	A	2.954e^-4	0.885	UPSTREAM ND42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14640938	3L_14640938_SNP [dm3] 3L_14647838_SNP [dm6]	C	T	2.960e^-4	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2627277	3L_2627277_SNP [dm3] 3L_2627277_SNP [dm6]	A	G	2.961e^-4	0.885	INTRON Pxn
2L	19935159	2L_19935159_SNP [dm3] 2L_19935159_SNP [dm6]	C	A	2.963e^-4	0.885	UPSTREAM sick & 1 other INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11471554	2R_11471554_SNP [dm3] 2R_15584049_SNP [dm6]	C	A	2.968e^-4	0.885	INTERGENIC
2L	4333472	2L_4333472_SNP [dm3] 2L_4333472_SNP [dm6]	T	C	2.978e^-4	0.885	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25114806	3R_25114806_SNP [dm3] 3R_29289084_SNP [dm6]	T	C	2.986e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15820192	2R_15820192_SNP [dm3] 2R_19932687_SNP [dm6]	A	T	2.998e^-4	0.885	INTERGENIC
3R	16738663	3R_16738663_DEL [dm3] 3R_20912941_DEL [dm6]	TC	T	3.011e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16738690	3R_16738690_SNP [dm3] 3R_20912968_SNP [dm6]	G	T	3.011e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16738726	3R_16738726_SNP [dm3] 3R_20913004_SNP [dm6]	C	A	3.011e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20405927	X_20405927_SNP [dm3] X_20534900_SNP [dm6]	G	T	3.024e^-4	0.885	INTERGENIC
3R	14430722	3R_14430722_SNP [dm3] 3R_18605000_SNP [dm6]	C	T	3.040e^-4	0.885	INTRON qin & 1 other
3R	26664328	3R_26664328_SNP [dm3] 3R_30838606_SNP [dm6]	A	C	3.044e^-4	0.885	SYNONYMOUS_CODING CG15544
3L	2610285	3L_2610285_SNP [dm3] 3L_2610285_SNP [dm6]	C	T	3.044e^-4	0.885	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26838751	3R_26838751_SNP [dm3] 3R_31013029_SNP [dm6]	C	A	3.048e^-4	0.885	INTRON 5-HT7	TF binding site mE1_TFBS_inv
3L	9081937	3L_9081937_SNP [dm3] 3L_9088837_SNP [dm6]	A	C	3.050e^-4	0.885	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	19017298	3L_19017298_SNP [dm3] 3L_19024198_SNP [dm6]	G	A	3.060e^-4	0.885	INTRON nkd
3L	7938380	3L_7938380_SNP [dm3] 3L_7945280_SNP [dm6]	C	T	3.074e^-4	0.885	DOWNSTREAM CG43880 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16433763	3L_16433763_SNP [dm3] 3L_16440663_SNP [dm6]	G	A	3.083e^-4	0.885	INTRON CG33158 & 1 other
3L	5935840	3L_5935840_SNP [dm3] 3L_5942740_SNP [dm6]	C	G	3.085e^-4	0.885	INTRON CG33993
3L	5935846	3L_5935846_DEL [dm3] 3L_5942746_DEL [dm6]	ATAGC	A	3.085e^-4	0.885	INTRON CG33993
2L	3628428	2L_3628428_SNP [dm3] 2L_3628428_SNP [dm6]	G	T	3.104e^-4	0.885	INTRON for	TF binding site BDTNP1_TFBS_twi
3R	9328443	3R_9328443_DEL [dm3] 3R_13502721_DEL [dm6]	AA	A	3.105e^-4	0.885	INTERGENIC
3R	23550954	3R_23550954_SNP [dm3] 3R_27725232_SNP [dm6]	A	C	3.109e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	19388891	3L_19388891_SNP [dm3] 3L_19395791_SNP [dm6]	G	A	3.119e^-4	0.885	INTRON CG32206
2L	10247933	2L_10247933_SNP [dm3] 2L_10247933_SNP [dm6]	A	G	3.137e^-4	0.885	SYNONYMOUS_CODING bsk UPSTREAM chico
3R	18714619	3R_18714619_DEL [dm3] 3R_22888897_DEL [dm6]	TT	T	3.161e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13386183	3R_13386183_SNP [dm3] 3R_17560461_SNP [dm6]	C	A	3.168e^-4	0.885	INTRON Hmx	TF binding site BDTNP1_TFBS_dl
3L	13541900	3L_13541900_INS [dm3] 3L_13548800_INS [dm6]	A	ATA	3.168e^-4	0.885	INTRON bru-3
3L	417974	3L_417974_SNP [dm3] 3L_417974_SNP [dm6]	T	A	3.169e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs
3L	1323325	3L_1323325_SNP [dm3] 3L_1323325_SNP [dm6]	T	A	3.169e^-4	0.885	UPSTREAM CG9184 INTRON Myo61F EXON CR45166	TF binding site mE1_TFBS_HSA
X	13981234	X_13981234_SNP [dm3] X_14087201_SNP [dm6]	T	C	3.188e^-4	0.885	INTERGENIC
2R	9979338	2R_9979338_SNP [dm3] 2R_14091833_SNP [dm6]	C	A	3.189e^-4	0.885	DOWNSTREAM CG42287 & 1 other INTRON Prosap
2L	14753114	2L_14753114_SNP [dm3] 2L_14753114_SNP [dm6]	T	A	3.201e^-4	0.885	INTERGENIC
3R	9196004	3R_9196004_SNP [dm3] 3R_13370282_SNP [dm6]	C	A	3.203e^-4	0.885	UTR_3_PRIME Lip3 & 1 other
2L	6907095	2L_6907095_SNP [dm3] 2L_6907095_SNP [dm6]	C	T	3.219e^-4	0.885	SYNONYMOUS_CODING CG13773 UPSTREAM Rat1 DOWNSTREAM Nlg2
2L	12358098	2L_12358098_SNP [dm3] 2L_12358098_SNP [dm6]	C	T	3.220e^-4	0.885	SYNONYMOUS_CODING bru-2 DOWNSTREAM CG17010
2R	6314338	2R_6314338_SNP [dm3] 2R_10426833_SNP [dm6]	G	T	3.227e^-4	0.885	DOWNSTREAM CG12896 INTERGENIC
2R	6393440	2R_6393440_SNP [dm3] 2R_10505935_SNP [dm6]	G	A	3.240e^-4	0.885	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26664675	3R_26664675_SNP [dm3] 3R_30838953_SNP [dm6]	G	A	3.240e^-4	0.885	NON_SYNONYMOUS_CODING CG15544
3L	18119927	3L_18119927_SNP [dm3] 3L_18126827_SNP [dm6]	T	C	3.258e^-4	0.885	INTERGENIC
2L	6530649	2L_6530649_SNP [dm3] 2L_6530649_SNP [dm6]	G	T	3.258e^-4	0.885	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_twi
3R	12061896	3R_12061896_SNP [dm3] 3R_16236174_SNP [dm6]	G	T	3.258e^-4	0.885	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2659050	3L_2659050_SNP [dm3] 3L_2659050_SNP [dm6]	T	C	3.269e^-4	0.885	SYNONYMOUS_CODING Fife UTR_3_PRIME Fife UPSTREAM CG33233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
3R	15604558	3R_15604558_SNP [dm3] 3R_19778836_SNP [dm6]	G	T	3.276e^-4	0.885	NON_SYNONYMOUS_CODING CG11391	TF binding site mE1_TFBS_sens
X	9449524	X_9449524_SNP [dm3] X_9555491_SNP [dm6]	T	C	3.281e^-4	0.885	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25344655	3R_25344655_SNP [dm3] 3R_29518933_SNP [dm6]	C	A	3.288e^-4	0.885	INTERGENIC
2L	5760074	2L_5760074_SNP [dm3] 2L_5760074_SNP [dm6]	T	A	3.300e^-4	0.885	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
3R	16738642	3R_16738642_INS [dm3] 3R_20912920_INS [dm6]	A	AA	3.306e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24610942	3R_24610942_SNP [dm3] 3R_28785220_SNP [dm6]	T	C	3.318e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19378082	2L_19378082_INS [dm3] 2L_19378082_INS [dm6]	C	CC	3.339e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24331273	3R_24331273_MNP [dm3] 3R_28505551_MNP [dm6]	AAA	CCG	3.356e^-4	0.885	INTRON Dhc98D
3R	24331279	3R_24331279_MNP [dm3] 3R_28505557_MNP [dm6]	TTT	GGC	3.356e^-4	0.885	INTRON Dhc98D
X	20318455	X_20318455_INS [dm3] X_20447428_INS [dm6]	C	CGGTGCAACGGGCATGGTC...	3.371e^-4	0.885	DOWNSTREAM CG42578 INTERGENIC
X	20318466	X_20318466_SNP [dm3] X_20447439_SNP [dm6]	A	G	3.371e^-4	0.885	DOWNSTREAM CG42578 INTERGENIC
X	20318467	X_20318467_SNP [dm3] X_20447440_SNP [dm6]	G	T	3.371e^-4	0.885	DOWNSTREAM CG42578 INTERGENIC
3L	19412520	3L_19412520_SNP [dm3] 3L_19419420_SNP [dm6]	G	A	3.379e^-4	0.885	INTERGENIC
2L	9507221	2L_9507221_SNP [dm3] 2L_9507221_SNP [dm6]	G	C	3.386e^-4	0.885	INTRON CG33298
2L	8762996	2L_8762996_SNP [dm3] 2L_8762996_SNP [dm6]	T	C	3.401e^-4	0.885	INTERGENIC
2L	8048392	2L_8048392_SNP [dm3] 2L_8048392_SNP [dm6]	T	C	3.403e^-4	0.885	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8048518	2L_8048518_SNP [dm3] 2L_8048518_SNP [dm6]	G	A	3.403e^-4	0.885	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2L	8048524	2L_8048524_SNP [dm3] 2L_8048524_SNP [dm6]	C	T	3.403e^-4	0.885	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2R	13191870	2R_13191870_SNP [dm3] 2R_17304365_SNP [dm6]	G	T	3.403e^-4	0.885	INTRON mbl
2R	6353918	2R_6353918_SNP [dm3] 2R_10466413_SNP [dm6]	C	G	3.403e^-4	0.885	NON_SYNONYMOUS_CODING Caf1-105 DOWNSTREAM Galphao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7206367	2R_7206367_SNP [dm3] 2R_11318862_SNP [dm6]	A	G	3.403e^-4	0.885	UPSTREAM nompA DOWNSTREAM Or47b INTERGENIC
2R	8093874	2R_8093874_SNP [dm3] 2R_12206369_SNP [dm6]	G	A	3.403e^-4	0.885	EXON CR45276	TF binding site mE1_TFBS_cad
2R	8093892	2R_8093892_SNP [dm3] 2R_12206387_SNP [dm6]	G	A	3.403e^-4	0.885	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1061298	3L_1061298_SNP [dm3] 3L_1061298_SNP [dm6]	T	G	3.403e^-4	0.885	INTRON bab1
3L	10920333	3L_10920333_SNP [dm3] 3L_10927233_SNP [dm6]	C	G	3.403e^-4	0.885	INTERGENIC
X	11652062	X_11652062_SNP [dm3] X_11758029_SNP [dm6]	T	A	3.403e^-4	0.885	INTRON m
X	11652067	X_11652067_SNP [dm3] X_11758034_SNP [dm6]	G	C	3.403e^-4	0.885	INTRON m
X	15513106	X_15513106_SNP [dm3] X_15619073_SNP [dm6]	C	T	3.403e^-4	0.885	INTRON sog	TF binding site mE1_TFBS_cad
X	15513419	X_15513419_SNP [dm3] X_15619386_SNP [dm6]	C	T	3.403e^-4	0.885	INTRON sog	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13626283	3R_13626283_SNP [dm3] 3R_17800561_SNP [dm6]	A	T	3.410e^-4	0.885	DOWNSTREAM CG17806 INTRON CG17803
3L	16470628	3L_16470628_SNP [dm3] 3L_16477528_SNP [dm6]	T	C	3.411e^-4	0.885	INTRON CG33158 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19825452	2L_19825452_SNP [dm3] 2L_19825452_SNP [dm6]	T	C	3.418e^-4	0.885	INTRON sick
2L	19825453	2L_19825453_SNP [dm3] 2L_19825453_SNP [dm6]	G	A	3.418e^-4	0.885	INTRON sick
3L	7908803	3L_7908803_SNP [dm3] 3L_7915703_SNP [dm6]	T	G	3.441e^-4	0.885	NON_SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26718585	3R_26718585_SNP [dm3] 3R_30892863_SNP [dm6]	C	G	3.477e^-4	0.885	INTERGENIC
3L	7908473	3L_7908473_SNP [dm3] 3L_7915373_SNP [dm6]	G	A	3.487e^-4	0.885	UPSTREAM CG32368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	2414040	X_2414040_SNP [dm3] X_2520007_SNP [dm6]	C	T	3.487e^-4	0.885	INTRON trol
2R	11039807	2R_11039807_SNP [dm3] 2R_15152302_SNP [dm6]	G	T	3.497e^-4	0.885	INTERGENIC
3R	16738833	3R_16738833_SNP [dm3] 3R_20913111_SNP [dm6]	T	A	3.499e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	919658	X_919658_SNP [dm3] X_1025625_SNP [dm6]	A	G	3.505e^-4	0.885	INTRON su_w[a]_ & 2 others
X	919681	X_919681_SNP [dm3] X_1025648_SNP [dm6]	G	C	3.505e^-4	0.885	INTRON su_w[a]_ & 2 others
3R	27081920	3R_27081920_SNP [dm3] 3R_31256198_SNP [dm6]	A	C	3.534e^-4	0.885	SYNONYMOUS_CODING spn-F	TF binding site mE1_TFBS_cad
2R	9788799	2R_9788799_SNP [dm3] 2R_13901294_SNP [dm6]	T	A	3.539e^-4	0.885	INTRON shot	TF binding site mE1_TFBS_cad
3R	27049096	3R_27049096_SNP [dm3] 3R_31223374_SNP [dm6]	T	G	3.553e^-4	0.885	INTRON CG12054	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17826921	3R_17826921_SNP [dm3] 3R_22001199_SNP [dm6]	G	C	3.569e^-4	0.885	INTRON Eip93F	TF binding site mE1_TFBS_HSA
2L	4429815	2L_4429815_SNP [dm3] 2L_4429815_SNP [dm6]	C	T	3.585e^-4	0.885	INTRON CG15431
2L	1300265	2L_1300265_SNP [dm3] 2L_1300265_SNP [dm6]	A	C	3.614e^-4	0.885	INTERGENIC
2R	11714319	2R_11714319_INS [dm3] 2R_15826814_INS [dm6]	T	TTT	3.631e^-4	0.885	UTR_3_PRIME Poxn INTRON tun
2L	8229817	2L_8229817_SNP [dm3] 2L_8229817_SNP [dm6]	G	A	3.657e^-4	0.885	INTRON Pvr
2L	8229819	2L_8229819_SNP [dm3] 2L_8229819_SNP [dm6]	A	C	3.657e^-4	0.885	INTRON Pvr
2L	12200176	2L_12200176_SNP [dm3] 2L_12200176_SNP [dm6]	G	T	3.663e^-4	0.885	INTRON aret
3R	20321720	3R_20321720_SNP [dm3] 3R_24495998_SNP [dm6]	T	C	3.682e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25417408	3R_25417408_SNP [dm3] 3R_29591686_SNP [dm6]	G	A	3.702e^-4	0.885	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	25417428	3R_25417428_SNP [dm3] 3R_29591706_SNP [dm6]	C	T	3.702e^-4	0.885	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	12644817	3R_12644817_SNP [dm3] 3R_16819095_SNP [dm6]	G	C	3.726e^-4	0.885	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13541885	3L_13541885_SNP [dm3] 3L_13548785_SNP [dm6]	A	G	3.730e^-4	0.885	INTRON bru-3
3R	24761012	3R_24761012_SNP [dm3] 3R_28935290_SNP [dm6]	A	G	3.731e^-4	0.885	INTRON CG14521
3L	4492574	3L_4492574_SNP [dm3] 3L_4492574_SNP [dm6]	G	T	3.754e^-4	0.885	INTERGENIC
X	20316145	X_20316145_SNP [dm3] X_20445118_SNP [dm6]	G	T	3.761e^-4	0.885	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15566523	2R_15566523_SNP [dm3] 2R_19679018_SNP [dm6]	G	T	3.768e^-4	0.885	INTERGENIC
X	10194370	X_10194370_SNP [dm3] X_10300337_SNP [dm6]	A	G	3.776e^-4	0.885	INTRON alpha-Man-I
X	11151581	X_11151581_SNP [dm3] X_11257548_SNP [dm6]	T	C	3.782e^-4	0.885	INTRON CG44422
2L	3858221	2L_3858221_SNP [dm3] 2L_3858221_SNP [dm6]	C	G	3.797e^-4	0.885	INTERGENIC
2R	8782901	2R_8782901_SNP [dm3] 2R_12895396_SNP [dm6]	A	G	3.820e^-4	0.885	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25173065	3R_25173065_SNP [dm3] 3R_29347343_SNP [dm6]	C	G	3.829e^-4	0.885	INTERGENIC
X	9296399	X_9296399_SNP [dm3] X_9402366_SNP [dm6]	T	C	3.846e^-4	0.885	INTRON mgl
3R	927064	3R_927064_SNP [dm3] 3R_5101342_SNP [dm6]	G	T	3.888e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9581466	2L_9581466_SNP [dm3] 2L_9581466_SNP [dm6]	A	T	3.893e^-4	0.885	NON_SYNONYMOUS_CODING gcm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3680728	2L_3680728_SNP [dm3] 2L_3680728_SNP [dm6]	T	C	3.903e^-4	0.885	INTRON CG34340
3L	15870106	3L_15870106_SNP [dm3] 3L_15877006_SNP [dm6]	T	A	3.915e^-4	0.885	UPSTREAM CR44051 INTRON pHCl
3R	9443986	3R_9443986_SNP [dm3] 3R_13618264_SNP [dm6]	T	C	3.916e^-4	0.885	EXON CR45680
3R	19308043	3R_19308043_SNP [dm3] 3R_23482321_SNP [dm6]	T	C	3.918e^-4	0.885	SYNONYMOUS_CODING Ir94f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19308079	3R_19308079_SNP [dm3] 3R_23482357_SNP [dm6]	C	A	3.918e^-4	0.885	NON_SYNONYMOUS_CODING Ir94f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4049154	3L_4049154_SNP [dm3] 3L_4049154_SNP [dm6]	A	C	3.934e^-4	0.885	INTRON CG1136
3L	4049196	3L_4049196_SNP [dm3] 3L_4049196_SNP [dm6]	C	T	3.934e^-4	0.885	INTRON CG1136
3R	9197243	3R_9197243_SNP [dm3] 3R_13371521_SNP [dm6]	T	G	3.940e^-4	0.885	INTRON Lip3
2L	4429814	2L_4429814_SNP [dm3] 2L_4429814_SNP [dm6]	A	C	3.941e^-4	0.885	INTRON CG15431
X	2757904	X_2757904_SNP [dm3] X_2863871_SNP [dm6]	G	A	3.984e^-4	0.885	INTRON kirre
2L	13915097	2L_13915097_SNP [dm3] 2L_13915097_SNP [dm6]	G	T	3.987e^-4	0.885	SYNONYMOUS_CODING Ance-3
2L	3045157	2L_3045157_SNP [dm3] 2L_3045157_SNP [dm6]	T	C	3.998e^-4	0.885	INTRON v_2_k05816
3L	13724195	3L_13724195_SNP [dm3] 3L_13731095_SNP [dm6]	C	T	4.013e^-4	0.885	INTRON bru-3
3R	9201815	3R_9201815_SNP [dm3] 3R_13376093_SNP [dm6]	T	G	4.047e^-4	0.885	UPSTREAM CR44138 INTRON CG9813	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1855024	2L_1855024_SNP [dm3] 2L_1855024_SNP [dm6]	G	T	4.059e^-4	0.885	INTRON wry	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3901582	2L_3901582_SNP [dm3] 2L_3901582_SNP [dm6]	T	C	4.059e^-4	0.885	INTRON capu
2L	4132503	2L_4132503_SNP [dm3] 2L_4132503_SNP [dm6]	G	T	4.059e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12442709	2R_12442709_SNP [dm3] 2R_16555204_SNP [dm6]	G	A	4.059e^-4	0.885	SYNONYMOUS_CODING Syn2
3L	19997154	3L_19997154_SNP [dm3] 3L_20004054_SNP [dm6]	C	T	4.059e^-4	0.885	NON_SYNONYMOUS_CODING CG7668	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	19998318	3L_19998318_SNP [dm3] 3L_20005218_SNP [dm6]	C	T	4.059e^-4	0.885	UPSTREAM kug DOWNSTREAM CG7668 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	20000093	3L_20000093_SNP [dm3] 3L_20006993_SNP [dm6]	G	T	4.059e^-4	0.885	INTRON kug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18167777	3R_18167777_SNP [dm3] 3R_22342055_SNP [dm6]	G	T	4.059e^-4	0.885	INTRON CG5386	TF binding site mE1_TFBS_inv
3R	18506002	3R_18506002_SNP [dm3] 3R_22680280_SNP [dm6]	G	A	4.059e^-4	0.885	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23947828	3R_23947828_SNP [dm3] 3R_28122106_SNP [dm6]	G	A	4.059e^-4	0.885	INTERGENIC
3R	25156272	3R_25156272_SNP [dm3] 3R_29330550_SNP [dm6]	G	A	4.059e^-4	0.885	INTERGENIC
X	7571178	X_7571178_SNP [dm3] X_7677145_SNP [dm6]	C	T	4.059e^-4	0.885	UTR_3_PRIME ct
2L	5760055	2L_5760055_SNP [dm3] 2L_5760055_SNP [dm6]	A	C	4.069e^-4	0.885	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
3R	12644673	3R_12644673_DEL [dm3] 3R_16818951_DEL [dm6]	TCT	T	4.086e^-4	0.885	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26936510	3R_26936510_SNP [dm3] 3R_31110788_SNP [dm6]	G	A	4.098e^-4	0.885	INTERGENIC
X	13194740	X_13194740_SNP [dm3] X_13300707_SNP [dm6]	T	C	4.104e^-4	0.885	DOWNSTREAM CG1622 INTRON CG1764
3L	16251871	3L_16251871_SNP [dm3] 3L_16258771_SNP [dm6]	T	C	4.105e^-4	0.885	DOWNSTREAM CG13053 INTERGENIC
3R	26047464	3R_26047464_SNP [dm3] 3R_30221742_SNP [dm6]	A	G	4.115e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16675000	3L_16675000_INS [dm3] 3L_16681900_INS [dm6]	A	AAA	4.118e^-4	0.885	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi
X	3658246	X_3658246_SNP [dm3] X_3764213_SNP [dm6]	A	G	4.119e^-4	0.885	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12048597	3R_12048597_SNP [dm3] 3R_16222875_SNP [dm6]	C	G	4.124e^-4	0.885	UPSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14982063	2R_14982063_SNP [dm3] 2R_19094558_SNP [dm6]	G	A	4.127e^-4	0.885	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
2L	9723608	2L_9723608_SNP [dm3] 2L_9723608_SNP [dm6]	T	G	4.143e^-4	0.885	INTRON Nckx30C	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10262364	3L_10262364_SNP [dm3] 3L_10269264_SNP [dm6]	A	C	4.156e^-4	0.885	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3R	14290732	3R_14290732_SNP [dm3] 3R_18465010_SNP [dm6]	C	T	4.171e^-4	0.885	INTRON fru
X	19766802	X_19766802_SNP [dm3] X_19872769_SNP [dm6]	G	T	4.177e^-4	0.885	INTRON Hers	transposable element FlyBase
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	4.193e^-4	0.885	UTR_3_PRIME Syt1
3R	27328663	3R_27328663_SNP [dm3] 3R_31502941_SNP [dm6]	T	G	4.194e^-4	0.885	INTRON mey
2R	19073413	2R_19073413_SNP [dm3] 2R_23185890_SNP [dm6]	G	T	4.199e^-4	0.885	DOWNSTREAM CG13539 INTRON CG34371
2R	4951280	2R_4951280_SNP [dm3] 2R_9063775_SNP [dm6]	T	C	4.212e^-4	0.885	INTRON ana	regulatory region REDfly_CRMs
3R	13641881	3R_13641881_SNP [dm3] 3R_17816159_SNP [dm6]	G	A	4.225e^-4	0.885	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4801154	3L_4801154_SNP [dm3] 3L_4801154_SNP [dm6]	C	A	4.238e^-4	0.885	UPSTREAM CR44528 DOWNSTREAM CR45740 INTERGENIC
2R	8622400	2R_8622400_SNP [dm3] 2R_12734895_SNP [dm6]	A	T	4.253e^-4	0.885	INTRON CG42663
3R	16738716	3R_16738716_SNP [dm3] 3R_20912994_SNP [dm6]	C	G	4.273e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3605042	2L_3605042_SNP [dm3] 2L_3605042_SNP [dm6]	C	T	4.286e^-4	0.885	SYNONYMOUS_CODING odd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20865778	X_20865778_SNP [dm3] X_20994751_SNP [dm6]	T	C	4.290e^-4	0.885	INTERGENIC
2R	7367377	2R_7367377_SNP [dm3] 2R_11479872_SNP [dm6]	G	A	4.297e^-4	0.885	INTRON inv
2L	1312803	2L_1312803_SNP [dm3] 2L_1312803_SNP [dm6]	G	T	4.301e^-4	0.885	INTERGENIC
X	13066356	X_13066356_SNP [dm3] X_13172323_SNP [dm6]	C	T	4.338e^-4	0.885	NON_SYNONYMOUS_CODING CG34411	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4801109	3L_4801109_SNP [dm3] 3L_4801109_SNP [dm6]	C	G	4.343e^-4	0.885	UPSTREAM CR44528 DOWNSTREAM CR45740 INTERGENIC
3L	3188583	3L_3188583_SNP [dm3] 3L_3188583_SNP [dm6]	A	G	4.349e^-4	0.885	SYNONYMOUS_CODING CG42525 DOWNSTREAM CG14957	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	2425777	2R_2425777_SNP [dm3] 2R_6538272_SNP [dm6]	A	G	4.351e^-4	0.885	INTRON jing
2R	2425778	2R_2425778_SNP [dm3] 2R_6538273_SNP [dm6]	T	C	4.351e^-4	0.885	INTRON jing
2R	2391244	2R_2391244_SNP [dm3] 2R_6503739_SNP [dm6]	A	T	4.361e^-4	0.885	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18652103	X_18652103_SNP [dm3] X_18758070_SNP [dm6]	T	C	4.374e^-4	0.885	INTERGENIC
3R	26974825	3R_26974825_SNP [dm3] 3R_31149103_SNP [dm6]	C	T	4.379e^-4	0.885	INTRON Gycbeta100B
3R	16725601	3R_16725601_SNP [dm3] 3R_20899879_SNP [dm6]	T	C	4.381e^-4	0.885	INTERGENIC
2L	5456174	2L_5456174_SNP [dm3] 2L_5456174_SNP [dm6]	C	T	4.382e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1196454	2L_1196454_SNP [dm3] 2L_1196454_SNP [dm6]	C	G	4.388e^-4	0.885	UTR_3_PRIME CG5001
3R	24355427	3R_24355427_SNP [dm3] 3R_28529705_SNP [dm6]	A	G	4.414e^-4	0.885	INTRON Ppn	TF binding site mE1_TFBS_chinmo
3R	24359452	3R_24359452_SNP [dm3] 3R_28533730_SNP [dm6]	G	A	4.414e^-4	0.885	INTRON Ppn
3R	24360688	3R_24360688_SNP [dm3] 3R_28534966_SNP [dm6]	T	G	4.414e^-4	0.885	INTRON Ppn
3R	24362526	3R_24362526_SNP [dm3] 3R_28536804_SNP [dm6]	A	T	4.414e^-4	0.885	INTRON Ppn
3R	9375176	3R_9375176_SNP [dm3] 3R_13549454_SNP [dm6]	A	C	4.420e^-4	0.885	INTERGENIC
X	917513	X_917513_SNP [dm3] X_1023480_SNP [dm6]	C	T	4.436e^-4	0.885	INTRON su_w[a]_ & 2 others
X	920143	X_920143_SNP [dm3] X_1026110_SNP [dm6]	T	C	4.436e^-4	0.885	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2R	6525418	2R_6525418_SNP [dm3] 2R_10637913_SNP [dm6]	T	A	4.449e^-4	0.885	INTRON CG11883	TF binding site mE1_TFBS_cad
3L	7624553	3L_7624553_SNP [dm3] 3L_7631453_SNP [dm6]	G	A	4.449e^-4	0.885	INTRON CG33275
3L	13336552	3L_13336552_SNP [dm3] 3L_13343452_SNP [dm6]	T	A	4.486e^-4	0.885	DOWNSTREAM CR44559 INTERGENIC
X	16756014	X_16756014_SNP [dm3] X_16861981_SNP [dm6]	C	G	4.487e^-4	0.885	INTRON CG13003
2L	10247834	2L_10247834_SNP [dm3] 2L_10247834_SNP [dm6]	T	A	4.508e^-4	0.885	UPSTREAM chico INTRON bsk
X	11652100	X_11652100_SNP [dm3] X_11758067_SNP [dm6]	A	C	4.526e^-4	0.885	INTRON m
2L	2762492	2L_2762492_SNP [dm3] 2L_2762492_SNP [dm6]	C	A	4.526e^-4	0.885	SYNONYMOUS_CODING Trn-SR DOWNSTREAM CG3077	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2762510	2L_2762510_SNP [dm3] 2L_2762510_SNP [dm6]	C	T	4.526e^-4	0.885	SYNONYMOUS_CODING Trn-SR DOWNSTREAM CG3077	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3659431	2R_3659431_SNP [dm3] 2R_7771926_SNP [dm6]	G	A	4.542e^-4	0.885	INTRON CG30497 & 1 other
2R	11545602	2R_11545602_SNP [dm3] 2R_15658097_SNP [dm6]	C	G	4.542e^-4	0.885	NON_SYNONYMOUS_CODING fus DOWNSTREAM mir-278 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9454074	2R_9454074_SNP [dm3] 2R_13566569_SNP [dm6]	G	A	4.564e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17422519	2R_17422519_SNP [dm3] 2R_21535014_SNP [dm6]	A	G	4.567e^-4	0.885	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	12644266	3R_12644266_INS [dm3] 3R_16818544_INS [dm6]	G	GCAAG	4.567e^-4	0.885	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19766514	X_19766514_SNP [dm3] X_19872481_SNP [dm6]	C	T	4.567e^-4	0.885	INTRON Hers	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	12194833	2L_12194833_SNP [dm3] 2L_12194833_SNP [dm6]	T	G	4.569e^-4	0.885	INTRON aret
X	11652072	X_11652072_SNP [dm3] X_11758039_SNP [dm6]	T	G	4.570e^-4	0.885	INTRON m
3R	15976709	3R_15976709_SNP [dm3] 3R_20150987_SNP [dm6]	C	A	4.581e^-4	0.885	INTERGENIC
3R	15976743	3R_15976743_SNP [dm3] 3R_20151021_SNP [dm6]	T	C	4.581e^-4	0.885	INTERGENIC
3R	15976754	3R_15976754_SNP [dm3] 3R_20151032_SNP [dm6]	C	T	4.581e^-4	0.885	INTERGENIC
X	20534992	X_20534992_SNP [dm3] X_20663965_SNP [dm6]	G	T	4.606e^-4	0.885	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	18461680	2R_18461680_SNP [dm3] 2R_22574175_SNP [dm6]	G	A	4.613e^-4	0.885	INTRON dnr1
2R	6737367	2R_6737367_SNP [dm3] 2R_10849862_SNP [dm6]	G	A	4.625e^-4	0.885	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19935196	2L_19935196_SNP [dm3] 2L_19935196_SNP [dm6]	T	A	4.667e^-4	0.885	UPSTREAM sick & 1 other INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13949278	3L_13949278_SNP [dm3] 3L_13956178_SNP [dm6]	A	C	4.688e^-4	0.885	INTRON CG32137
2L	14368002	2L_14368002_SNP [dm3] 2L_14368002_SNP [dm6]	T	A	4.690e^-4	0.885	INTERGENIC
2R	17895880	2R_17895880_SNP [dm3] 2R_22008375_SNP [dm6]	G	T	4.694e^-4	0.885	INTRON CG34370
2R	7395548	2R_7395548_INS [dm3] 2R_11508043_INS [dm6]	A	TT	4.718e^-4	0.885	UTR_3_PRIME inv DOWNSTREAM inv
2L	19686941	2L_19686941_SNP [dm3] 2L_19686941_SNP [dm6]	G	A	4.718e^-4	0.885	INTRON Lar
X	6213448	X_6213448_SNP [dm3] X_6319415_SNP [dm6]	A	T	4.724e^-4	0.885	INTRON CG15894
X	20530232	X_20530232_SNP [dm3] X_20659205_SNP [dm6]	A	G	4.733e^-4	0.885	INTRON Cyp6v1
3R	19183213	3R_19183213_SNP [dm3] 3R_23357491_SNP [dm6]	C	T	4.734e^-4	0.885	SYNONYMOUS_CODING Sec13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	5694650	X_5694650_SNP [dm3] X_5800617_SNP [dm6]	T	C	4.742e^-4	0.885	INTERGENIC
2R	8358219	2R_8358219_SNP [dm3] 2R_12470714_SNP [dm6]	C	T	4.744e^-4	0.885	SYNONYMOUS_CODING CG8545 INTRON dgt5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	917385	X_917385_SNP [dm3] X_1023352_SNP [dm6]	C	T	4.748e^-4	0.885	INTRON su_w[a]_ & 2 others
3R	24221157	3R_24221157_SNP [dm3] 3R_28395435_SNP [dm6]	T	A	4.759e^-4	0.885	INTERGENIC
3R	4032540	3R_4032540_SNP [dm3] 3R_8206818_SNP [dm6]	G	T	4.768e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	17693124	3L_17693124_SNP [dm3] 3L_17700024_SNP [dm6]	G	T	4.769e^-4	0.885	INTRON Ccn
X	6619612	X_6619612_SNP [dm3] X_6725579_SNP [dm6]	C	G	4.794e^-4	0.885	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	4429945	2L_4429945_SNP [dm3] 2L_4429945_SNP [dm6]	T	C	4.806e^-4	0.885	INTRON CG15431
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	4.814e^-4	0.885	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14452748	2R_14452748_SNP [dm3] 2R_18565243_SNP [dm6]	C	T	4.814e^-4	0.885	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	2702262	X_2702262_SNP [dm3] X_2808229_SNP [dm6]	T	C	4.817e^-4	0.885	INTRON kirre
3R	20028836	3R_20028836_SNP [dm3] 3R_24203114_SNP [dm6]	A	G	4.837e^-4	0.885	INTRON twin
3L	1256178	3L_1256178_SNP [dm3] 3L_1256178_SNP [dm6]	A	T	4.846e^-4	0.885	UPSTREAM CG9134 DOWNSTREAM CG9130 & 1 other INTERGENIC
2R	6555513	2R_6555513_SNP [dm3] 2R_10668008_SNP [dm6]	A	C	4.853e^-4	0.885	INTERGENIC
2R	14621502	2R_14621502_SNP [dm3] 2R_18733997_SNP [dm6]	G	A	4.861e^-4	0.885	INTRON Hs3st-A
2R	18607745	2R_18607745_SNP [dm3] 2R_22720240_SNP [dm6]	A	C	4.861e^-4	0.885	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19762240	X_19762240_INS [dm3] X_19868207_INS [dm6]	A	TT	4.861e^-4	0.885	INTRON Hers
3R	16963996	3R_16963996_SNP [dm3] 3R_21138274_SNP [dm6]	A	G	4.875e^-4	0.885	UTR_5_PRIME meigo UPSTREAM meigo DOWNSTREAM Ubpy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	18358064	3R_18358064_SNP [dm3] 3R_22532342_SNP [dm6]	C	G	4.877e^-4	0.885	UTR_3_PRIME CG5326 UPSTREAM CG33093
2R	8352009	2R_8352009_SNP [dm3] 2R_12464504_SNP [dm6]	T	C	4.881e^-4	0.885	SYNONYMOUS_CODING Lac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5779924	3R_5779924_SNP [dm3] 3R_9954202_SNP [dm6]	G	T	4.882e^-4	0.885	UTR_3_PRIME Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3R	25833677	3R_25833677_SNP [dm3] 3R_30007955_SNP [dm6]	T	G	4.896e^-4	0.885	SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	19517597	X_19517597_SNP [dm3] X_19623564_SNP [dm6]	G	A	4.915e^-4	0.885	UPSTREAM NAA20 INTRON MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7835242	3L_7835242_SNP [dm3] 3L_7842142_SNP [dm6]	A	T	4.927e^-4	0.885	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19822533	2L_19822533_DEL [dm3] 2L_19822533_DEL [dm6]	CC	C	4.939e^-4	0.885	INTRON sick
3R	12211145	3R_12211145_SNP [dm3] 3R_16385423_SNP [dm6]	T	G	4.941e^-4	0.885	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	1650910	2L_1650910_SNP [dm3] 2L_1650910_SNP [dm6]	G	A	4.942e^-4	0.885	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	920276	X_920276_DEL [dm3] X_1026243_DEL [dm6]	GCGCACGGTGT...	G	4.948e^-4	0.885	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	25190693	3R_25190693_SNP [dm3] 3R_29364971_SNP [dm6]	A	G	4.959e^-4	0.885	INTERGENIC
3L	8043901	3L_8043901_SNP [dm3] 3L_8050801_SNP [dm6]	C	T	4.979e^-4	0.885	UTR_3_PRIME nmo DOWNSTREAM nmo
2R	14982051	2R_14982051_SNP [dm3] 2R_19094546_SNP [dm6]	C	A	4.987e^-4	0.885	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
2L	10985688	2L_10985688_SNP [dm3] 2L_10985688_SNP [dm6]	T	C	4.997e^-4	0.885	SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9197249	3R_9197249_SNP [dm3] 3R_13371527_SNP [dm6]	T	A	5.000e^-4	0.885	INTRON Lip3
2R	18741395	2R_18741395_SNP [dm3] 2R_22853872_SNP [dm6]	T	G	5.005e^-4	0.885	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18741492	2R_18741492_SNP [dm3] 2R_22853969_SNP [dm6]	G	A	5.005e^-4	0.885	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	17928418	3L_17928418_SNP [dm3] 3L_17935318_SNP [dm6]	C	T	5.009e^-4	0.885	SYNONYMOUS_CODING CG43173 INTRON CG43174
3R	14761495	3R_14761495_SNP [dm3] 3R_18935773_SNP [dm6]	T	A	5.016e^-4	0.885	INTRON CG42613
3L	16880262	3L_16880262_SNP [dm3] 3L_16887162_SNP [dm6]	A	G	5.021e^-4	0.885	UTR_5_PRIME Lmpt INTRON Lmpt
3L	4130369	3L_4130369_SNP [dm3] 3L_4130369_SNP [dm6]	T	A	5.028e^-4	0.885	INTRON ens
2R	11707989	2R_11707989_SNP [dm3] 2R_15820484_SNP [dm6]	T	A	5.030e^-4	0.885	INTRON tun & 1 other
X	12685183	X_12685183_SNP [dm3] X_12791150_SNP [dm6]	A	T	5.032e^-4	0.885	UTR_3_PRIME Pde9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24326503	3R_24326503_SNP [dm3] 3R_28500781_SNP [dm6]	G	C	5.042e^-4	0.885	INTRON Dhc98D
3R	24326527	3R_24326527_SNP [dm3] 3R_28500805_SNP [dm6]	T	C	5.042e^-4	0.885	INTRON Dhc98D
3R	24326617	3R_24326617_SNP [dm3] 3R_28500895_SNP [dm6]	A	G	5.042e^-4	0.885	INTRON Dhc98D
3L	13541922	3L_13541922_SNP [dm3] 3L_13548822_SNP [dm6]	A	T	5.063e^-4	0.885	INTRON bru-3
2R	17939476	2R_17939476_SNP [dm3] 2R_22051971_SNP [dm6]	G	C	5.066e^-4	0.885	INTERGENIC
3R	24331261	3R_24331261_DEL [dm3] 3R_28505539_DEL [dm6]	TATGAATATGT...	T	5.069e^-4	0.885	INTRON Dhc98D
3R	26957190	3R_26957190_SNP [dm3] 3R_31131468_SNP [dm6]	T	C	5.073e^-4	0.885	UPSTREAM CG15556 & 1 other INTERGENIC
3L	2989975	3L_2989975_SNP [dm3] 3L_2989975_SNP [dm6]	T	G	5.090e^-4	0.885	INTERGENIC
2R	14452682	2R_14452682_SNP [dm3] 2R_18565177_SNP [dm6]	C	G	5.093e^-4	0.885	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19580282	2R_19580282_SNP [dm3] 2R_23692759_SNP [dm6]	C	T	5.101e^-4	0.885	SYNONYMOUS_CODING CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7325219	3L_7325219_SNP [dm3] 3L_7332119_SNP [dm6]	A	G	5.103e^-4	0.885	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
X	11829189	X_11829189_DEL [dm3] X_11935156_DEL [dm6]	GTTTCTGG	G	5.116e^-4	0.885	UTR_3_PRIME cac
2R	11472449	2R_11472449_SNP [dm3] 2R_15584944_SNP [dm6]	T	A	5.124e^-4	0.885	INTERGENIC
2L	15091513	2L_15091513_SNP [dm3] 2L_15091513_SNP [dm6]	A	C	5.131e^-4	0.885	NON_SYNONYMOUS_CODING CG15270
2R	12408099	2R_12408099_SNP [dm3] 2R_16520594_SNP [dm6]	C	T	5.131e^-4	0.885	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	1299018	2L_1299018_SNP [dm3] 2L_1299018_SNP [dm6]	A	T	5.143e^-4	0.885	INTERGENIC
2L	1299028	2L_1299028_SNP [dm3] 2L_1299028_SNP [dm6]	T	C	5.143e^-4	0.885	INTERGENIC
2R	12779517	2R_12779517_SNP [dm3] 2R_16892012_SNP [dm6]	T	C	5.147e^-4	0.885	INTRON CG8910	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16589156	3R_16589156_SNP [dm3] 3R_20763434_SNP [dm6]	A	G	5.149e^-4	0.885	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11968893	2R_11968893_SNP [dm3] 2R_16081388_SNP [dm6]	G	A	5.149e^-4	0.885	UTR_3_PRIME Dg DOWNSTREAM Dg
2L	10902417	2L_10902417_SNP [dm3] 2L_10902417_SNP [dm6]	T	G	5.154e^-4	0.885	UPSTREAM CG14070 INTERGENIC
2L	10902439	2L_10902439_DEL [dm3] 2L_10902439_DEL [dm6]	AC	T	5.154e^-4	0.885	UPSTREAM CG14070 INTERGENIC
2R	17028570	2R_17028570_SNP [dm3] 2R_21141065_SNP [dm6]	T	G	5.156e^-4	0.885	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	26967716	3R_26967716_SNP [dm3] 3R_31141994_SNP [dm6]	A	G	5.157e^-4	0.885	INTRON Gycbeta100B
2L	1063485	2L_1063485_SNP [dm3] 2L_1063485_SNP [dm6]	A	G	5.161e^-4	0.885	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1063486	2L_1063486_SNP [dm3] 2L_1063486_SNP [dm6]	C	A	5.161e^-4	0.885	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1063531	2L_1063531_SNP [dm3] 2L_1063531_SNP [dm6]	A	G	5.161e^-4	0.885	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1063533	2L_1063533_SNP [dm3] 2L_1063533_SNP [dm6]	C	T	5.161e^-4	0.885	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7908940	3L_7908940_SNP [dm3] 3L_7915840_SNP [dm6]	C	T	5.173e^-4	0.885	UTR_3_PRIME CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14153724	3L_14153724_SNP [dm3] 3L_14160624_SNP [dm6]	T	A	5.173e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs
3R	18350246	3R_18350246_SNP [dm3] 3R_22524524_SNP [dm6]	T	C	5.173e^-4	0.885	INTRON CG5346
3L	4049324	3L_4049324_SNP [dm3] 3L_4049324_SNP [dm6]	T	G	5.189e^-4	0.885	INTRON CG1136
3L	4049369	3L_4049369_SNP [dm3] 3L_4049369_SNP [dm6]	T	G	5.189e^-4	0.885	INTRON CG1136
3R	4182367	3R_4182367_SNP [dm3] 3R_8356645_SNP [dm6]	G	A	5.189e^-4	0.885	UPSTREAM stck INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18250995	3L_18250995_SNP [dm3] 3L_18257895_SNP [dm6]	C	G	5.199e^-4	0.885	INTERGENIC
3R	24362048	3R_24362048_SNP [dm3] 3R_28536326_SNP [dm6]	T	G	5.206e^-4	0.885	INTRON Ppn
2R	11039792	2R_11039792_SNP [dm3] 2R_15152287_SNP [dm6]	T	A	5.213e^-4	0.885	INTERGENIC
3R	10604354	3R_10604354_SNP [dm3] 3R_14778632_SNP [dm6]	T	G	5.214e^-4	0.885	INTRON jvl
3R	11618337	3R_11618337_SNP [dm3] 3R_15792615_SNP [dm6]	T	A	5.216e^-4	0.885	UPSTREAM Acyp2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	11618379	3R_11618379_SNP [dm3] 3R_15792657_SNP [dm6]	C	T	5.216e^-4	0.885	UPSTREAM Acyp2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	11618473	3R_11618473_SNP [dm3] 3R_15792751_SNP [dm6]	C	A	5.216e^-4	0.885	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	11618513	3R_11618513_SNP [dm3] 3R_15792791_SNP [dm6]	G	T	5.216e^-4	0.885	UTR_5_PRIME Acyp2 UPSTREAM c_3_G & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
3R	11618847	3R_11618847_SNP [dm3] 3R_15793125_SNP [dm6]	G	A	5.216e^-4	0.885	SYNONYMOUS_CODING Acyp2 UPSTREAM c_3_G & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
3R	11619444	3R_11619444_SNP [dm3] 3R_15793722_SNP [dm6]	A	G	5.216e^-4	0.885	UPSTREAM nsl1 DOWNSTREAM Acyp2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	11619621	3R_11619621_SNP [dm3] 3R_15793899_SNP [dm6]	T	G	5.216e^-4	0.885	UTR_5_PRIME nsl1 DOWNSTREAM Acyp2 INTRON nsl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	11621138	3R_11621138_SNP [dm3] 3R_15795416_SNP [dm6]	G	T	5.216e^-4	0.885	SYNONYMOUS_CODING nsl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	9547837	3L_9547837_SNP [dm3] 3L_9554737_SNP [dm6]	C	T	5.222e^-4	0.885	INTRON CG42673
3L	1112505	3L_1112505_DEL [dm3] 3L_1112505_DEL [dm6]	CTAAA	C	5.252e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12849624	3L_12849624_SNP [dm3] 3L_12856524_SNP [dm6]	G	C	5.262e^-4	0.885	UTR_3_PRIME Ent3 DOWNSTREAM CG32107	TF binding site mE1_TFBS_cad
3R	27014934	3R_27014934_SNP [dm3] 3R_31189212_SNP [dm6]	G	A	5.265e^-4	0.885	INTRON mesh
3L	6766922	3L_6766922_SNP [dm3] 3L_6773822_SNP [dm6]	A	C	5.297e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs
X	19517526	X_19517526_SNP [dm3] X_19623493_SNP [dm6]	C	G	5.319e^-4	0.885	SYNONYMOUS_CODING MKP-4 UPSTREAM NAA20	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16073579	2R_16073579_SNP [dm3] 2R_20186074_SNP [dm6]	C	T	5.321e^-4	0.885	INTERGENIC
3R	12642564	3R_12642564_SNP [dm3] 3R_16816842_SNP [dm6]	C	T	5.326e^-4	0.885	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3L	9053223	3L_9053223_SNP [dm3] 3L_9060123_SNP [dm6]	T	C	5.332e^-4	0.885	INTRON Argk
3R	18722541	3R_18722541_SNP [dm3] 3R_22896819_SNP [dm6]	T	C	5.340e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16585441	3R_16585441_SNP [dm3] 3R_20759719_SNP [dm6]	A	T	5.341e^-4	0.885	SYNONYMOUS_CODING CG31195 INTRON Syp
2L	14340716	2L_14340716_SNP [dm3] 2L_14340716_SNP [dm6]	A	G	5.341e^-4	0.885	DOWNSTREAM CG15286 INTRON CG33090
2R	6656084	2R_6656084_SNP [dm3] 2R_10768579_SNP [dm6]	C	T	5.346e^-4	0.885	INTRON CG33144
3L	4549517	3L_4549517_SNP [dm3] 3L_4549517_SNP [dm6]	G	A	5.364e^-4	0.885	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24220233	3R_24220233_SNP [dm3] 3R_28394511_SNP [dm6]	A	G	5.370e^-4	0.885	INTERGENIC
3R	23031131	3R_23031131_SNP [dm3] 3R_27205409_SNP [dm6]	G	T	5.373e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs
3L	15469855	3L_15469855_SNP [dm3] 3L_15476755_SNP [dm6]	T	A	5.392e^-4	0.885	INTERGENIC
3R	24335507	3R_24335507_SNP [dm3] 3R_28509785_SNP [dm6]	C	T	5.395e^-4	0.885	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad
3R	24359956	3R_24359956_SNP [dm3] 3R_28534234_SNP [dm6]	G	T	5.395e^-4	0.885	INTRON Ppn
3R	24361575	3R_24361575_SNP [dm3] 3R_28535853_SNP [dm6]	A	G	5.395e^-4	0.885	INTRON Ppn
3R	24362676	3R_24362676_SNP [dm3] 3R_28536954_SNP [dm6]	A	G	5.395e^-4	0.885	INTRON Ppn
2L	3680687	2L_3680687_SNP [dm3] 2L_3680687_SNP [dm6]	G	A	5.416e^-4	0.885	INTRON CG34340
2L	3680712	2L_3680712_SNP [dm3] 2L_3680712_SNP [dm6]	T	G	5.416e^-4	0.885	INTRON CG34340
X	7802707	X_7802707_INS [dm3] X_7908674_INS [dm6]	T	TT	5.417e^-4	0.885	UPSTREAM dpr14 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12970349	3L_12970349_SNP [dm3] 3L_12977249_SNP [dm6]	A	T	5.419e^-4	0.885	INTERGENIC
3R	13663683	3R_13663683_SNP [dm3] 3R_17837961_SNP [dm6]	G	T	5.419e^-4	0.885	INTRON tinc	transposable element FlyBase
3L	17984333	3L_17984333_SNP [dm3] 3L_17991233_SNP [dm6]	G	T	5.440e^-4	0.885	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2619686	3L_2619686_INS [dm3] 3L_2619686_INS [dm6]	G	TC	5.440e^-4	0.885	INTRON Pxn
3L	2619784	3L_2619784_SNP [dm3] 3L_2619784_SNP [dm6]	T	A	5.440e^-4	0.885	INTRON Pxn
3R	16589066	3R_16589066_SNP [dm3] 3R_20763344_SNP [dm6]	A	T	5.447e^-4	0.885	UPSTREAM CG31195 INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5372449	2L_5372449_SNP [dm3] 2L_5372449_SNP [dm6]	T	C	5.455e^-4	0.885	INTERGENIC
2L	20466188	2L_20466188_SNP [dm3] 2L_20466188_SNP [dm6]	T	C	5.463e^-4	0.885	INTRON CR44980
3L	3188454	3L_3188454_SNP [dm3] 3L_3188454_SNP [dm6]	A	G	5.464e^-4	0.885	SYNONYMOUS_CODING CG42525 DOWNSTREAM CG14957	TF binding site mE1_TFBS_sens
3R	26936492	3R_26936492_SNP [dm3] 3R_31110770_SNP [dm6]	A	T	5.471e^-4	0.885	INTERGENIC
3L	4049341	3L_4049341_SNP [dm3] 3L_4049341_SNP [dm6]	A	C	5.482e^-4	0.885	INTRON CG1136
2L	6760432	2L_6760432_SNP [dm3] 2L_6760432_SNP [dm6]	A	G	5.482e^-4	0.885	UPSTREAM CG11322 INTRON CG11321
3L	22815890	3L_22815890_INS [dm3] 3L_22822790_INS [dm6]	T	TT	5.485e^-4	0.885	INTRON jim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19302102	2R_19302102_SNP [dm3] 2R_23414579_SNP [dm6]	A	G	5.486e^-4	0.885	NON_SYNONYMOUS_CODING CG9812	TF binding site mE1_TFBS_chinmo
2L	16165409	2L_16165409_SNP [dm3] 2L_16165409_SNP [dm6]	C	A	5.491e^-4	0.885	UPSTREAM Ca-alpha1D INTERGENIC
3L	19997959	3L_19997959_INS [dm3] 3L_20004859_INS [dm6]	A	ATGGCAAAGTTA...	5.491e^-4	0.885	UPSTREAM kug DOWNSTREAM CG7668 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	20054548	3L_20054548_SNP [dm3] 3L_20061448_SNP [dm6]	G	T	5.491e^-4	0.885	INTRON sNPF-R
3R	18625197	3R_18625197_SNP [dm3] 3R_22799475_SNP [dm6]	C	T	5.491e^-4	0.885	INTERGENIC
3R	24931575	3R_24931575_SNP [dm3] 3R_29105853_SNP [dm6]	G	A	5.491e^-4	0.885	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26976404	3R_26976404_SNP [dm3] 3R_31150682_SNP [dm6]	C	T	5.492e^-4	0.885	SYNONYMOUS_CODING Gycbeta100B
3L	11513577	3L_11513577_DEL [dm3] 3L_11520477_DEL [dm6]	TTTATT	T	5.501e^-4	0.885	DOWNSTREAM CG11714 INTRON Fuca
3R	12926587	3R_12926587_SNP [dm3] 3R_17100865_SNP [dm6]	T	C	5.512e^-4	0.885	INTRON cher
3R	12926613	3R_12926613_SNP [dm3] 3R_17100891_SNP [dm6]	G	T	5.512e^-4	0.885	INTRON cher
2L	14555249	2L_14555249_SNP [dm3] 2L_14555249_SNP [dm6]	T	A	5.513e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
X	11232618	X_11232618_INS [dm3] X_11338585_INS [dm6]	A	AAA	5.526e^-4	0.885	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
2L	11368179	2L_11368179_SNP [dm3] 2L_11368179_SNP [dm6]	T	C	5.534e^-4	0.885	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	920739	X_920739_SNP [dm3] X_1026706_SNP [dm6]	C	G	5.567e^-4	0.885	UPSTREAM CG3021 & 2 others INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	920885	X_920885_SNP [dm3] X_1026852_SNP [dm6]	A	T	5.567e^-4	0.885	UTR_5_PRIME CG3021 UPSTREAM CG32814 & 1 other INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19776416	2L_19776416_SNP [dm3] 2L_19776416_SNP [dm6]	G	A	5.586e^-4	0.885	UTR_3_PRIME CdGAPr
X	20317573	X_20317573_SNP [dm3] X_20446546_SNP [dm6]	T	G	5.607e^-4	0.885	NON_SYNONYMOUS_CODING CG42578 DOWNSTREAM CG1695
3R	17992833	3R_17992833_SNP [dm3] 3R_22167111_SNP [dm6]	T	C	5.610e^-4	0.885	INTRON SKIP	TF binding site mE1_TFBS_Kr
3L	13833398	3L_13833398_SNP [dm3] 3L_13840298_SNP [dm6]	T	C	5.614e^-4	0.885	UTR_3_PRIME CG8757	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13625980	3R_13625980_SNP [dm3] 3R_17800258_SNP [dm6]	A	G	5.621e^-4	0.885	NON_SYNONYMOUS_CODING CG17803
2L	6507026	2L_6507026_SNP [dm3] 2L_6507026_SNP [dm6]	C	T	5.623e^-4	0.885	DOWNSTREAM CR44775 INTRON CG31637
3R	24478271	3R_24478271_SNP [dm3] 3R_28652549_SNP [dm6]	G	C	5.643e^-4	0.885	INTERGENIC
3R	9413078	3R_9413078_SNP [dm3] 3R_13587356_SNP [dm6]	T	A	5.651e^-4	0.885	UPSTREAM CG14370 INTERGENIC
3R	10607044	3R_10607044_SNP [dm3] 3R_14781322_SNP [dm6]	G	A	5.664e^-4	0.885	INTRON jvl
2L	4353700	2L_4353700_SNP [dm3] 2L_4353700_SNP [dm6]	A	G	5.671e^-4	0.885	NON_SYNONYMOUS_CODING CG15429	TF binding site BDTNP1_TFBS_prd
2L	492331	2L_492331_SNP [dm3] 2L_492331_SNP [dm6]	A	T	5.690e^-4	0.885	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	493550	2L_493550_SNP [dm3] 2L_493550_SNP [dm6]	G	A	5.690e^-4	0.885	INTRON ush
2L	5954899	2L_5954899_SNP [dm3] 2L_5954899_SNP [dm6]	G	A	5.690e^-4	0.885	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
X	17304679	X_17304679_DEL [dm3] X_17410646_DEL [dm6]	CC	C	5.690e^-4	0.885	INTERGENIC
X	20534993	X_20534993_SNP [dm3] X_20663966_SNP [dm6]	G	T	5.693e^-4	0.885	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13620569	2R_13620569_SNP [dm3] 2R_17733064_SNP [dm6]	C	G	5.694e^-4	0.885	UPSTREAM CG34195 DOWNSTREAM CG4984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13620573	2R_13620573_SNP [dm3] 2R_17733068_SNP [dm6]	G	T	5.694e^-4	0.885	UPSTREAM CG34195 DOWNSTREAM CG4984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13620662	2R_13620662_INS [dm3] 2R_17733157_INS [dm6]	T	ATA	5.694e^-4	0.885	UPSTREAM CG34195 DOWNSTREAM CG4984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13620665	2R_13620665_SNP [dm3] 2R_17733160_SNP [dm6]	T	A	5.694e^-4	0.885	UPSTREAM CG34195 DOWNSTREAM CG4984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7171322	2L_7171322_SNP [dm3] 2L_7171322_SNP [dm6]	G	A	5.695e^-4	0.885	INTERGENIC
3R	7307321	3R_7307321_SNP [dm3] 3R_11481599_SNP [dm6]	G	C	5.699e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26823592	3R_26823592_SNP [dm3] 3R_30997870_SNP [dm6]	G	A	5.702e^-4	0.885	INTRON 5-HT7
3R	26784297	3R_26784297_SNP [dm3] 3R_30958575_SNP [dm6]	T	C	5.716e^-4	0.885	INTERGENIC
2R	7804260	2R_7804260_SNP [dm3] 2R_11916755_SNP [dm6]	A	G	5.740e^-4	0.885	INTERGENIC
3L	10268484	3L_10268484_SNP [dm3] 3L_10275384_SNP [dm6]	A	T	5.742e^-4	0.885	DOWNSTREAM Or67d INTERGENIC
X	5115095	X_5115095_MNP [dm3] X_5221062_MNP [dm6]	ATT	TAA	5.769e^-4	0.885	INTRON CG15465 & 1 other
X	9587732	X_9587732_DEL [dm3] X_9693699_DEL [dm6]	AGCACTA	A	5.769e^-4	0.885	UPSTREAM btd INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	5701852	X_5701852_SNP [dm3] X_5807819_SNP [dm6]	A	G	5.771e^-4	0.885	INTERGENIC
2L	6073685	2L_6073685_DEL [dm3] 2L_6073685_DEL [dm6]	TT	T	5.773e^-4	0.885	UTR_3_PRIME Kr-h2 DOWNSTREAM CR43801
2R	9867005	2R_9867005_SNP [dm3] 2R_13979500_SNP [dm6]	A	C	5.786e^-4	0.885	START_GAINED CG6701 UTR_5_PRIME CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2328932	X_2328932_SNP [dm3] X_2434899_SNP [dm6]	G	T	5.796e^-4	0.885	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5937088	3L_5937088_INS [dm3] 3L_5943988_INS [dm6]	C	CG	5.811e^-4	0.885	INTRON CG33993
3L	14640201	3L_14640201_SNP [dm3] 3L_14647101_SNP [dm6]	G	A	5.824e^-4	0.885	INTRON dlp
3L	14641706	3L_14641706_SNP [dm3] 3L_14648606_SNP [dm6]	C	A	5.824e^-4	0.885	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	7721188	3R_7721188_SNP [dm3] 3R_11895466_SNP [dm6]	T	G	5.832e^-4	0.885	NON_SYNONYMOUS_CODING Cad87A
3R	26119143	3R_26119143_SNP [dm3] 3R_30293421_SNP [dm6]	A	G	5.838e^-4	0.885	INTRON hdc	TF binding site BDTNP1_TFBS_dl
X	5115068	X_5115068_SNP [dm3] X_5221035_SNP [dm6]	G	A	5.857e^-4	0.885	INTRON CG15465 & 1 other
3R	24335537	3R_24335537_SNP [dm3] 3R_28509815_SNP [dm6]	A	T	5.862e^-4	0.885	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad
3R	24335684	3R_24335684_SNP [dm3] 3R_28509962_SNP [dm6]	A	G	5.862e^-4	0.885	INTRON Dhc98D	TF binding site mE1_TFBS_cad
3R	24337002	3R_24337002_SNP [dm3] 3R_28511280_SNP [dm6]	T	A	5.862e^-4	0.885	SYNONYMOUS_CODING Dhc98D
3R	24347146	3R_24347146_SNP [dm3] 3R_28521424_SNP [dm6]	T	G	5.862e^-4	0.885	SYNONYMOUS_CODING Ppn UPSTREAM CG31051
3R	24359511	3R_24359511_SNP [dm3] 3R_28533789_SNP [dm6]	A	G	5.862e^-4	0.885	INTRON Ppn
2L	12807907	2L_12807907_SNP [dm3] 2L_12807907_SNP [dm6]	A	G	5.884e^-4	0.885	EXON CR43818
2L	11191010	2L_11191010_SNP [dm3] 2L_11191010_SNP [dm6]	G	C	5.887e^-4	0.885	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1236696	2L_1236696_SNP [dm3] 2L_1236696_SNP [dm6]	C	G	5.887e^-4	0.885	INTERGENIC
2L	15431797	2L_15431797_SNP [dm3] 2L_15431797_SNP [dm6]	C	T	5.887e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7742647	2L_7742647_SNP [dm3] 2L_7742647_SNP [dm6]	A	G	5.887e^-4	0.885	INTERGENIC
2L	7742855	2L_7742855_SNP [dm3] 2L_7742855_SNP [dm6]	T	C	5.887e^-4	0.885	DOWNSTREAM CG7214 INTERGENIC
2R	13597454	2R_13597454_SNP [dm3] 2R_17709949_SNP [dm6]	A	T	5.887e^-4	0.885	UPSTREAM CG6424 INTRON CG6424
2R	17035200	2R_17035200_SNP [dm3] 2R_21147695_SNP [dm6]	C	T	5.887e^-4	0.885	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
2R	18394879	2R_18394879_SNP [dm3] 2R_22507374_SNP [dm6]	C	T	5.887e^-4	0.885	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4083072	3L_4083072_SNP [dm3] 3L_4083072_SNP [dm6]	A	C	5.887e^-4	0.885	INTRON Gad1
3R	16891835	3R_16891835_SNP [dm3] 3R_21066113_SNP [dm6]	C	T	5.887e^-4	0.885	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	4127208	3R_4127208_SNP [dm3] 3R_8301486_SNP [dm6]	A	G	5.887e^-4	0.885	UTR_5_PRIME mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4127242	3R_4127242_SNP [dm3] 3R_8301520_SNP [dm6]	C	A	5.887e^-4	0.885	SYNONYMOUS_CODING mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4156237	3R_4156237_SNP [dm3] 3R_8330515_SNP [dm6]	A	C	5.887e^-4	0.885	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14302776	X_14302776_SNP [dm3] X_14408743_SNP [dm6]	C	T	5.887e^-4	0.885	INTRON dpr8
3R	7825409	3R_7825409_DEL [dm3] 3R_11999687_DEL [dm6]	CC	C	5.905e^-4	0.885	INTRON Tk & 1 other
3R	13961332	3R_13961332_SNP [dm3] 3R_18135610_SNP [dm6]	G	T	5.910e^-4	0.885	DOWNSTREAM sr INTERGENIC
3R	16704630	3R_16704630_SNP [dm3] 3R_20878908_SNP [dm6]	C	T	5.920e^-4	0.885	DOWNSTREAM TotZ EXON CR44048
3R	12718678	3R_12718678_SNP [dm3] 3R_16892956_SNP [dm6]	A	G	5.923e^-4	0.885	UPSTREAM iab-8 INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2610215	3L_2610215_SNP [dm3] 3L_2610215_SNP [dm6]	A	T	5.923e^-4	0.885	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_chinmo
2R	12583235	2R_12583235_SNP [dm3] 2R_16695730_SNP [dm6]	C	A	5.925e^-4	0.885	INTRON CG30463
2L	13441488	2L_13441488_SNP [dm3] 2L_13441488_SNP [dm6]	A	C	5.926e^-4	0.885	INTRON CG42784 EXON CR45683
2R	11471413	2R_11471413_SNP [dm3] 2R_15583908_SNP [dm6]	A	T	5.959e^-4	0.885	INTERGENIC
2R	8594607	2R_8594607_INS [dm3] 2R_12707102_INS [dm6]	C	CTCCC	5.965e^-4	0.885	INTRON CG42663
3L	15493031	3L_15493031_SNP [dm3] 3L_15499931_SNP [dm6]	C	T	5.968e^-4	0.885	INTRON CG7275	TF binding site mE1_TFBS_sens
X	19750078	X_19750078_SNP [dm3] X_19856045_SNP [dm6]	A	G	5.996e^-4	0.885	INTRON Nup205	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11980266	2R_11980266_SNP [dm3] 2R_16092761_SNP [dm6]	G	A	5.999e^-4	0.885	INTRON Dg
2L	8010179	2L_8010179_SNP [dm3] 2L_8010179_SNP [dm6]	A	T	6.013e^-4	0.885	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17101725	2R_17101725_SNP [dm3] 2R_21214220_SNP [dm6]	T	C	6.014e^-4	0.885	SYNONYMOUS_CODING CG4302
X	20890618	X_20890618_SNP [dm3] X_21019591_SNP [dm6]	G	C	6.025e^-4	0.885	INTERGENIC
X	14301449	X_14301449_SNP [dm3] X_14407416_SNP [dm6]	T	C	6.027e^-4	0.885	INTRON dpr8
2L	14381471	2L_14381471_DEL [dm3] 2L_14381471_DEL [dm6]	TACATTT	T	6.040e^-4	0.885	UPSTREAM ppk INTERGENIC
3L	7909192	3L_7909192_SNP [dm3] 3L_7916092_SNP [dm6]	C	T	6.042e^-4	0.885	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7909196	3L_7909196_SNP [dm3] 3L_7916096_SNP [dm6]	T	C	6.042e^-4	0.885	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7909198	3L_7909198_SNP [dm3] 3L_7916098_SNP [dm6]	T	G	6.042e^-4	0.885	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11471549	2R_11471549_SNP [dm3] 2R_15584044_SNP [dm6]	T	C	6.107e^-4	0.885	INTERGENIC
3L	485649	3L_485649_SNP [dm3] 3L_485649_SNP [dm6]	C	T	6.112e^-4	0.885	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12585818	2L_12585818_SNP [dm3] 2L_12585818_SNP [dm6]	A	G	6.127e^-4	0.885	INTERGENIC
3R	15360021	3R_15360021_SNP [dm3] 3R_19534299_SNP [dm6]	G	C	6.130e^-4	0.885	INTRON Dys
2L	10986151	2L_10986151_SNP [dm3] 2L_10986151_SNP [dm6]	G	T	6.140e^-4	0.885	INTRON piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25024504	3R_25024504_SNP [dm3] 3R_29198782_SNP [dm6]	G	A	6.141e^-4	0.885	INTRON CG14515
3R	25024506	3R_25024506_SNP [dm3] 3R_29198784_SNP [dm6]	T	A	6.141e^-4	0.885	INTRON CG14515
2L	8347823	2L_8347823_SNP [dm3] 2L_8347823_SNP [dm6]	C	A	6.159e^-4	0.885	INTRON CG7778
3L	9547817	3L_9547817_SNP [dm3] 3L_9554717_SNP [dm6]	A	G	6.159e^-4	0.885	INTRON CG42673
3L	1434701	3L_1434701_SNP [dm3] 3L_1434701_SNP [dm6]	G	T	6.169e^-4	0.885	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad
2L	4353444	2L_4353444_SNP [dm3] 2L_4353444_SNP [dm6]	C	T	6.183e^-4	0.885	SYNONYMOUS_CODING CG15429	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3286114	2L_3286114_SNP [dm3] 2L_3286114_SNP [dm6]	C	T	6.200e^-4	0.885	INTERGENIC
3R	24693813	3R_24693813_SNP [dm3] 3R_28868091_SNP [dm6]	T	C	6.211e^-4	0.885	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
3R	9751978	3R_9751978_SNP [dm3] 3R_13926256_SNP [dm6]	A	G	6.215e^-4	0.885	INTERGENIC
3R	24339115	3R_24339115_SNP [dm3] 3R_28513393_SNP [dm6]	T	G	6.221e^-4	0.885	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26871503	3R_26871503_SNP [dm3] 3R_31045781_SNP [dm6]	C	T	6.223e^-4	0.885	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
2R	16697314	2R_16697314_SNP [dm3] 2R_20809809_SNP [dm6]	A	G	6.225e^-4	0.885	INTERGENIC
3L	2617220	3L_2617220_SNP [dm3] 3L_2617220_SNP [dm6]	G	A	6.248e^-4	0.885	INTRON Pxn	TF binding site mE1_TFBS_HSA
3R	15023420	3R_15023420_SNP [dm3] 3R_19197698_SNP [dm6]	C	T	6.271e^-4	0.885	INTRON CG31475
3R	24128438	3R_24128438_SNP [dm3] 3R_28302716_SNP [dm6]	C	G	6.281e^-4	0.885	DOWNSTREAM CG12516 INTERGENIC
3R	24128442	3R_24128442_SNP [dm3] 3R_28302720_SNP [dm6]	C	T	6.281e^-4	0.885	DOWNSTREAM CG12516 INTERGENIC
X	919947	X_919947_SNP [dm3] X_1025914_SNP [dm6]	C	G	6.295e^-4	0.885	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site mE1_TFBS_HSA
X	18565196	X_18565196_SNP [dm3] X_18671163_SNP [dm6]	G	T	6.304e^-4	0.885	INTERGENIC
3R	24362334	3R_24362334_SNP [dm3] 3R_28536612_SNP [dm6]	T	C	6.307e^-4	0.885	INTRON Ppn
2R	18608804	2R_18608804_SNP [dm3] 2R_22721299_SNP [dm6]	T	C	6.312e^-4	0.885	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	920011	X_920011_SNP [dm3] X_1025978_SNP [dm6]	G	A	6.314e^-4	0.885	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10500896	2R_10500896_SNP [dm3] 2R_14613391_SNP [dm6]	C	A	6.318e^-4	0.885	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4427987	2L_4427987_SNP [dm3] 2L_4427987_SNP [dm6]	A	G	6.336e^-4	0.885	INTRON CG15431
2L	4428074	2L_4428074_SNP [dm3] 2L_4428074_SNP [dm6]	A	C	6.336e^-4	0.885	INTRON CG15431
2L	7750313	2L_7750313_SNP [dm3] 2L_7750313_SNP [dm6]	T	C	6.339e^-4	0.885	INTERGENIC
X	12130287	X_12130287_SNP [dm3] X_12236254_SNP [dm6]	A	C	6.349e^-4	0.885	UPSTREAM CG32655 INTRON Ten-a
2R	6525565	2R_6525565_SNP [dm3] 2R_10638060_SNP [dm6]	A	C	6.356e^-4	0.885	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2R	7310344	2R_7310344_SNP [dm3] 2R_11422839_SNP [dm6]	A	T	6.380e^-4	0.885	INTRON Drip
3R	4213127	3R_4213127_SNP [dm3] 3R_8387405_SNP [dm6]	C	T	6.388e^-4	0.885	SYNONYMOUS_CODING CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11306297	2R_11306297_SNP [dm3] 2R_15418792_SNP [dm6]	C	G	6.412e^-4	0.885	INTRON CG43729
X	18214043	X_18214043_DEL [dm3] X_18320010_DEL [dm6]	CC	C	6.418e^-4	0.885	INTRON CG6023
X	6593836	X_6593836_DEL [dm3] X_6699803_DEL [dm6]	TA	C	6.428e^-4	0.885	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13336679	3L_13336679_SNP [dm3] 3L_13343579_SNP [dm6]	A	C	6.430e^-4	0.885	EXON CR44559
3R	10312363	3R_10312363_SNP [dm3] 3R_14486641_SNP [dm6]	T	A	6.464e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1192500	3L_1192500_SNP [dm3] 3L_1192500_SNP [dm6]	G	A	6.464e^-4	0.885	INTRON Trh	TF binding site mE1_TFBS_chinmo
2R	9867176	2R_9867176_DEL [dm3] 2R_13979671_DEL [dm6]	GTTG	G	6.466e^-4	0.885	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10032697	2R_10032697_SNP [dm3] 2R_14145192_SNP [dm6]	A	G	6.504e^-4	0.885	DOWNSTREAM mir-989 INTERGENIC
3L	9238019	3L_9238019_SNP [dm3] 3L_9244919_SNP [dm6]	G	A	6.505e^-4	0.885	INTERGENIC
2R	12572945	2R_12572945_SNP [dm3] 2R_16685440_SNP [dm6]	A	T	6.514e^-4	0.885	INTRON CG30463	TF binding site mE1_TFBS_HSA
2R	11520603	2R_11520603_SNP [dm3] 2R_15633098_SNP [dm6]	C	G	6.538e^-4	0.885	INTRON CG42524
3L	10620516	3L_10620516_SNP [dm3] 3L_10627416_SNP [dm6]	A	T	6.577e^-4	0.885	UTR_3_PRIME CG34238 DOWNSTREAM CG14151	TF binding site mE1_TFBS_inv
3L	10620520	3L_10620520_SNP [dm3] 3L_10627420_SNP [dm6]	G	T	6.577e^-4	0.885	UTR_3_PRIME CG34238 DOWNSTREAM CG14151	TF binding site mE1_TFBS_inv
2R	9893527	2R_9893527_SNP [dm3] 2R_14006022_SNP [dm6]	T	C	6.577e^-4	0.885	UPSTREAM mir-4978 INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11793150	2R_11793150_SNP [dm3] 2R_15905645_SNP [dm6]	C	T	6.580e^-4	0.885	INTRON sli	TF binding site mE1_TFBS_chinmo
3L	13840140	3L_13840140_SNP [dm3] 3L_13847040_SNP [dm6]	C	G	6.586e^-4	0.885	SYNONYMOUS_CODING Hml
2L	10382440	2L_10382440_INS [dm3] 2L_10382440_INS [dm6]	C	CAGAAAC	6.587e^-4	0.885	UTR_3_PRIME gny DOWNSTREAM gny	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	11728786	X_11728786_SNP [dm3] X_11834753_SNP [dm6]	T	C	6.598e^-4	0.885	SYNONYMOUS_CODING rudhira DOWNSTREAM rudhira	TF binding site mE1_TFBS_cad
X	8177974	X_8177974_SNP [dm3] X_8283941_SNP [dm6]	T	A	6.622e^-4	0.885	INTRON nAChRalpha3
3L	2916283	3L_2916283_SNP [dm3] 3L_2916283_SNP [dm6]	A	G	6.624e^-4	0.885	SYNONYMOUS_CODING CG9970 INTRON Shab
2R	12333487	2R_12333487_SNP [dm3] 2R_16445982_SNP [dm6]	T	A	6.638e^-4	0.885	UPSTREAM CG15925 INTERGENIC
2R	19897034	2R_19897034_SNP [dm3] 2R_24009511_SNP [dm6]	C	T	6.638e^-4	0.885	NON_SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo
3R	10737232	3R_10737232_SNP [dm3] 3R_14911510_SNP [dm6]	A	T	6.684e^-4	0.885	INTERGENIC
X	18391766	X_18391766_SNP [dm3] X_18497733_SNP [dm6]	G	T	6.684e^-4	0.885	INTRON GalNAc-T2
2R	15327843	2R_15327843_SNP [dm3] 2R_19440338_SNP [dm6]	A	G	6.684e^-4	0.885	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
2R	15327849	2R_15327849_SNP [dm3] 2R_19440344_SNP [dm6]	A	G	6.684e^-4	0.885	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
2R	15327852	2R_15327852_SNP [dm3] 2R_19440347_SNP [dm6]	C	T	6.684e^-4	0.885	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
2R	7805366	2R_7805366_SNP [dm3] 2R_11917861_SNP [dm6]	A	T	6.684e^-4	0.885	UPSTREAM CR44305 INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	15519254	X_15519254_SNP [dm3] X_15625221_SNP [dm6]	A	T	6.687e^-4	0.885	INTRON sog	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11464741	2R_11464741_SNP [dm3] 2R_15577236_SNP [dm6]	G	A	6.691e^-4	0.885	INTERGENIC
3R	17357502	3R_17357502_SNP [dm3] 3R_21531780_SNP [dm6]	G	C	6.700e^-4	0.885	EXON CR43372	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13828577	X_13828577_INS [dm3] X_13934544_INS [dm6]	A	AA	6.719e^-4	0.885	INTRON mamo	TF binding site mE1_TFBS_HSA
2R	17279522	2R_17279522_SNP [dm3] 2R_21392017_SNP [dm6]	A	T	6.742e^-4	0.885	DOWNSTREAM Sdc INTRON Acox57D-d
2L	6541066	2L_6541066_SNP [dm3] 2L_6541066_SNP [dm6]	A	G	6.742e^-4	0.885	INTRON eya	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
X	3744491	X_3744491_SNP [dm3] X_3850458_SNP [dm6]	G	A	6.749e^-4	0.885	NON_SYNONYMOUS_CODING ec INTRON ec
X	3744492	X_3744492_SNP [dm3] X_3850459_SNP [dm6]	G	A	6.749e^-4	0.885	SYNONYMOUS_CODING ec INTRON ec
2R	6737375	2R_6737375_SNP [dm3] 2R_10849870_SNP [dm6]	G	A	6.750e^-4	0.885	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5303793	2L_5303793_SNP [dm3] 2L_5303793_SNP [dm6]	G	A	6.752e^-4	0.885	INTRON vri
2L	5303796	2L_5303796_SNP [dm3] 2L_5303796_SNP [dm6]	T	C	6.752e^-4	0.885	INTRON vri
X	9450178	X_9450178_SNP [dm3] X_9556145_SNP [dm6]	A	G	6.756e^-4	0.885	DOWNSTREAM RpS28b INTRON CG15317	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18034795	2R_18034795_SNP [dm3] 2R_22147290_SNP [dm6]	A	G	6.777e^-4	0.885	INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13373022	3L_13373022_SNP [dm3] 3L_13379922_SNP [dm6]	C	T	6.798e^-4	0.885	DOWNSTREAM SNCF & 1 other INTRON CG14111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23030816	3R_23030816_SNP [dm3] 3R_27205094_SNP [dm6]	C	T	6.800e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs
3R	23030979	3R_23030979_SNP [dm3] 3R_27205257_SNP [dm6]	C	A	6.800e^-4	0.885	INTERGENIC	regulatory region REDfly_CRMs
3R	23840896	3R_23840896_SNP [dm3] 3R_28015174_SNP [dm6]	G	T	6.800e^-4	0.885	INTERGENIC
X	18213925	X_18213925_SNP [dm3] X_18319892_SNP [dm6]	T	C	6.805e^-4	0.885	INTRON CG6023	transposable element FlyBase
X	6804573	X_6804573_SNP [dm3] X_6910540_SNP [dm6]	T	G	6.830e^-4	0.885	INTRON CG14431
2L	12355342	2L_12355342_SNP [dm3] 2L_12355342_SNP [dm6]	G	A	6.830e^-4	0.885	INTRON bru-2
2R	13476399	2R_13476399_SNP [dm3] 2R_17588894_SNP [dm6]	G	C	6.833e^-4	0.885	INTRON RhoGAP54D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3814116	X_3814116_SNP [dm3] X_3920083_SNP [dm6]	T	C	6.852e^-4	0.885	INTRON CG42541
2L	14722937	2L_14722937_SNP [dm3] 2L_14722937_SNP [dm6]	G	C	6.855e^-4	0.885	INTERGENIC
3R	13626029	3R_13626029_SNP [dm3] 3R_17800307_SNP [dm6]	C	G	6.863e^-4	0.885	NON_SYNONYMOUS_CODING CG17803
2R	8919176	2R_8919176_SNP [dm3] 2R_13031671_SNP [dm6]	C	T	6.877e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_sens
2L	9078300	2L_9078300_SNP [dm3] 2L_9078300_SNP [dm6]	C	A	6.900e^-4	0.885	DOWNSTREAM CG12439 INTERGENIC
3L	17344171	3L_17344171_SNP [dm3] 3L_17351071_SNP [dm6]	G	A	6.905e^-4	0.885	INTERGENIC
3R	24359177	3R_24359177_SNP [dm3] 3R_28533455_SNP [dm6]	T	A	6.917e^-4	0.885	INTRON Ppn	TF binding site BDTNP1_TFBS_twi
3R	24362176	3R_24362176_SNP [dm3] 3R_28536454_SNP [dm6]	T	C	6.917e^-4	0.885	INTRON Ppn
3R	24366275	3R_24366275_SNP [dm3] 3R_28540553_SNP [dm6]	C	T	6.917e^-4	0.885	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15646322	3L_15646322_SNP [dm3] 3L_15653222_SNP [dm6]	C	T	6.925e^-4	0.885	UPSTREAM Eig71Ec DOWNSTREAM Eig71Ed INTERGENIC
3L	15646324	3L_15646324_SNP [dm3] 3L_15653224_SNP [dm6]	A	T	6.925e^-4	0.885	UPSTREAM Eig71Ec DOWNSTREAM Eig71Ed INTERGENIC
3R	25024464	3R_25024464_SNP [dm3] 3R_29198742_SNP [dm6]	C	A	6.929e^-4	0.885	INTRON CG14515
2L	8155849	2L_8155849_INS [dm3] 2L_8155849_INS [dm6]	T	TATAT	6.929e^-4	0.885	UTR_5_PRIME CG8552 DOWNSTREAM CG43394 INTRON CG8552 & 1 other	TF binding site mE1_TFBS_Kr
2R	15929214	2R_15929214_SNP [dm3] 2R_20041709_SNP [dm6]	C	T	6.942e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	14368022	2L_14368022_SNP [dm3] 2L_14368022_SNP [dm6]	G	A	6.959e^-4	0.885	INTERGENIC
2L	14368117	2L_14368117_SNP [dm3] 2L_14368117_SNP [dm6]	A	T	6.959e^-4	0.885	INTERGENIC
3R	9121270	3R_9121270_SNP [dm3] 3R_13295548_SNP [dm6]	C	T	6.960e^-4	0.885	SYNONYMOUS_CODING CG8773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	917421	3L_917421_INS [dm3] 3L_917421_INS [dm6]	T	TTGGGT	6.961e^-4	0.885	INTRON Glut1
2R	11471577	2R_11471577_SNP [dm3] 2R_15584072_SNP [dm6]	C	A	6.962e^-4	0.885	INTERGENIC
2R	16073671	2R_16073671_SNP [dm3] 2R_20186166_SNP [dm6]	C	G	6.979e^-4	0.885	INTERGENIC
2R	16073708	2R_16073708_SNP [dm3] 2R_20186203_SNP [dm6]	G	T	6.979e^-4	0.885	INTERGENIC
3L	17927867	3L_17927867_SNP [dm3] 3L_17934767_SNP [dm6]	C	G	6.993e^-4	0.885	UTR_5_PRIME CG43173 INTRON CG43174
3L	17928775	3L_17928775_SNP [dm3] 3L_17935675_SNP [dm6]	C	T	6.993e^-4	0.885	DOWNSTREAM CG43173 INTRON CG43174
2R	12788605	2R_12788605_SNP [dm3] 2R_16901100_SNP [dm6]	C	G	7.001e^-4	0.885	SYNONYMOUS_CODING inaC
3L	1266792	3L_1266792_SNP [dm3] 3L_1266792_SNP [dm6]	G	C	7.013e^-4	0.885	INTRON CG9134
2R	17560463	2R_17560463_SNP [dm3] 2R_21672958_SNP [dm6]	T	A	7.031e^-4	0.885	DOWNSTREAM CG15676 INTERGENIC
3L	7631240	3L_7631240_SNP [dm3] 3L_7638140_SNP [dm6]	C	T	7.035e^-4	0.885	INTRON CG33275
3L	7631513	3L_7631513_SNP [dm3] 3L_7638413_SNP [dm6]	G	A	7.035e^-4	0.885	SYNONYMOUS_CODING CG33275
3L	7631816	3L_7631816_SNP [dm3] 3L_7638716_SNP [dm6]	C	T	7.035e^-4	0.885	INTRON CG33275
3L	7631849	3L_7631849_SNP [dm3] 3L_7638749_SNP [dm6]	T	A	7.035e^-4	0.885	UPSTREAM snoRNA:Me18S-A1806 INTRON CG33275
3L	7631851	3L_7631851_SNP [dm3] 3L_7638751_SNP [dm6]	A	T	7.035e^-4	0.885	UPSTREAM snoRNA:Me18S-A1806 INTRON CG33275
2L	13625197	2L_13625197_SNP [dm3] 2L_13625197_SNP [dm6]	C	A	7.038e^-4	0.885	INTRON kuz
3R	26932268	3R_26932268_SNP [dm3] 3R_31106546_SNP [dm6]	C	G	7.050e^-4	0.885	UTR_3_PRIME CG11318
3L	4739624	3L_4739624_SNP [dm3] 3L_4739624_SNP [dm6]	G	C	7.054e^-4	0.885	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
2L	3045159	2L_3045159_SNP [dm3] 2L_3045159_SNP [dm6]	G	T	7.061e^-4	0.885	INTRON v_2_k05816
2R	8351750	2R_8351750_SNP [dm3] 2R_12464245_SNP [dm6]	G	C	7.066e^-4	0.885	INTRON Lac
2R	9348168	2R_9348168_SNP [dm3] 2R_13460663_SNP [dm6]	T	C	7.069e^-4	0.885	INTRON arr	TF binding site mE1_TFBS_chinmo
3R	11618058	3R_11618058_SNP [dm3] 3R_15792336_SNP [dm6]	G	T	7.077e^-4	0.885	NON_SYNONYMOUS_CODING c_3_G UPSTREAM Acyp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	10220802	3L_10220802_SNP [dm3] 3L_10227702_SNP [dm6]	A	T	7.093e^-4	0.885	INTERGENIC
3L	2574247	3L_2574247_SNP [dm3] 3L_2574247_SNP [dm6]	T	C	7.093e^-4	0.885	INTRON msn
2L	14555224	2L_14555224_SNP [dm3] 2L_14555224_SNP [dm6]	C	T	7.093e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
2L	14555229	2L_14555229_SNP [dm3] 2L_14555229_SNP [dm6]	T	A	7.093e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
2L	14555262	2L_14555262_SNP [dm3] 2L_14555262_SNP [dm6]	T	C	7.093e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
3R	16739206	3R_16739206_SNP [dm3] 3R_20913484_SNP [dm6]	T	A	7.096e^-4	0.885	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16738759	3R_16738759_SNP [dm3] 3R_20913037_SNP [dm6]	G	A	7.097e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17980353	3L_17980353_SNP [dm3] 3L_17987253_SNP [dm6]	C	A	7.100e^-4	0.885	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24279717	3R_24279717_SNP [dm3] 3R_28453995_SNP [dm6]	A	T	7.105e^-4	0.885	INTRON beat-VI
3R	14184296	3R_14184296_SNP [dm3] 3R_18358574_SNP [dm6]	G	A	7.106e^-4	0.885	INTRON CG15803
3L	17159757	3L_17159757_INS [dm3] 3L_17166657_INS [dm6]	A	AA	7.111e^-4	0.885	UPSTREAM CR43433 INTRON Rbp6
2R	8583224	2R_8583224_SNP [dm3] 2R_12695719_SNP [dm6]	C	A	7.112e^-4	0.885	INTERGENIC
3L	13840106	3L_13840106_SNP [dm3] 3L_13847006_SNP [dm6]	T	C	7.127e^-4	0.885	INTRON Hml
2L	12580486	2L_12580486_SNP [dm3] 2L_12580486_SNP [dm6]	A	G	7.128e^-4	0.885	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	19997800	X_19997800_SNP [dm3] X_20103767_SNP [dm6]	C	T	7.129e^-4	0.885	INTERGENIC
3R	16738745	3R_16738745_SNP [dm3] 3R_20913023_SNP [dm6]	T	G	7.130e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16738773	3R_16738773_SNP [dm3] 3R_20913051_SNP [dm6]	A	T	7.130e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16738779	3R_16738779_SNP [dm3] 3R_20913057_SNP [dm6]	T	A	7.130e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7070099	3L_7070099_SNP [dm3] 3L_7076999_SNP [dm6]	T	C	7.145e^-4	0.885	INTRON CG8641
2L	12872190	2L_12872190_SNP [dm3] 2L_12872190_SNP [dm6]	C	G	7.162e^-4	0.885	INTERGENIC
3L	13330711	3L_13330711_SNP [dm3] 3L_13337611_SNP [dm6]	T	A	7.167e^-4	0.885	INTERGENIC
3R	24338230	3R_24338230_SNP [dm3] 3R_28512508_SNP [dm6]	C	T	7.189e^-4	0.885	SYNONYMOUS_CODING Dhc98D
3R	24350886	3R_24350886_SNP [dm3] 3R_28525164_SNP [dm6]	C	T	7.189e^-4	0.885	NON_SYNONYMOUS_CODING Ppn INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24362976	3R_24362976_SNP [dm3] 3R_28537254_SNP [dm6]	C	A	7.189e^-4	0.885	INTRON Ppn
3R	24363590	3R_24363590_SNP [dm3] 3R_28537868_SNP [dm6]	T	C	7.189e^-4	0.885	INTRON Ppn
3R	9784390	3R_9784390_SNP [dm3] 3R_13958668_SNP [dm6]	T	A	7.200e^-4	0.885	UPSTREAM Ipp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9784391	3R_9784391_SNP [dm3] 3R_13958669_SNP [dm6]	T	A	7.200e^-4	0.885	UPSTREAM Ipp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15975430	3R_15975430_SNP [dm3] 3R_20149708_SNP [dm6]	C	T	7.202e^-4	0.885	INTERGENIC
X	20530224	X_20530224_SNP [dm3] X_20659197_SNP [dm6]	A	G	7.214e^-4	0.885	INTRON Cyp6v1
2L	16165411	2L_16165411_INS [dm3] 2L_16165411_INS [dm6]	C	TGTAGTGTAGTGTAGTGTAG...	7.230e^-4	0.885	UPSTREAM Ca-alpha1D INTERGENIC
2R	6539469	2R_6539469_SNP [dm3] 2R_10651964_SNP [dm6]	G	T	7.233e^-4	0.885	INTERGENIC
3R	25836469	3R_25836469_SNP [dm3] 3R_30010747_SNP [dm6]	G	A	7.237e^-4	0.885	SYNONYMOUS_CODING CG7920 DOWNSTREAM Nlp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	18269520	3R_18269520_SNP [dm3] 3R_22443798_SNP [dm6]	C	T	7.241e^-4	0.885	NON_SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_sens
2R	18497290	2R_18497290_SNP [dm3] 2R_22609785_SNP [dm6]	A	G	7.243e^-4	0.885	SYNONYMOUS_CODING CG4329 DOWNSTREAM Vps20	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6898496	2L_6898496_INS [dm3] 2L_6898496_INS [dm6]	A	AGATGGGA	7.256e^-4	0.885	INTRON Nlg2
2R	12333458	2R_12333458_SNP [dm3] 2R_16445953_SNP [dm6]	G	T	7.271e^-4	0.885	UPSTREAM CG15925 INTERGENIC
2R	20207887	2R_20207887_SNP [dm3] 2R_24320364_SNP [dm6]	C	T	7.272e^-4	0.885	INTERGENIC
3R	10626956	3R_10626956_SNP [dm3] 3R_14801234_SNP [dm6]	C	T	7.293e^-4	0.885	UPSTREAM CG14857 DOWNSTREAM CG14856 INTERGENIC
3R	10626960	3R_10626960_SNP [dm3] 3R_14801238_SNP [dm6]	T	G	7.293e^-4	0.885	UPSTREAM CG14857 DOWNSTREAM CG14856 INTERGENIC
3R	24691184	3R_24691184_SNP [dm3] 3R_28865462_SNP [dm6]	G	T	7.301e^-4	0.885	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7307312	3R_7307312_SNP [dm3] 3R_11481590_SNP [dm6]	C	T	7.302e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	19997803	X_19997803_SNP [dm3] X_20103770_SNP [dm6]	A	G	7.309e^-4	0.885	INTERGENIC
3L	5769220	3L_5769220_SNP [dm3] 3L_5776120_SNP [dm6]	T	C	7.310e^-4	0.885	UTR_3_PRIME scny DOWNSTREAM vito & 1 other
3L	5769221	3L_5769221_SNP [dm3] 3L_5776121_SNP [dm6]	T	C	7.310e^-4	0.885	UTR_3_PRIME scny DOWNSTREAM vito & 1 other
2R	4949240	2R_4949240_SNP [dm3] 2R_9061735_SNP [dm6]	G	T	7.315e^-4	0.885	SYNONYMOUS_CODING CG8197 UPSTREAM ana	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16068031	2R_16068031_SNP [dm3] 2R_20180526_SNP [dm6]	C	A	7.316e^-4	0.885	INTERGENIC
3R	15975779	3R_15975779_SNP [dm3] 3R_20150057_SNP [dm6]	G	A	7.321e^-4	0.885	INTERGENIC
X	5322305	X_5322305_SNP [dm3] X_5428272_SNP [dm6]	C	T	7.328e^-4	0.885	UPSTREAM CR45517 DOWNSTREAM CG16756 INTERGENIC
X	5322331	X_5322331_SNP [dm3] X_5428298_SNP [dm6]	T	G	7.328e^-4	0.885	UPSTREAM CR45517 DOWNSTREAM CG16756 INTERGENIC
2L	8644251	2L_8644251_SNP [dm3] 2L_8644251_SNP [dm6]	G	A	7.335e^-4	0.885	INTRON Sema-1a
2L	8644264	2L_8644264_SNP [dm3] 2L_8644264_SNP [dm6]	G	C	7.335e^-4	0.885	INTRON Sema-1a
2R	1746678	2R_1746678_SNP [dm3] 2R_5859173_SNP [dm6]	T	C	7.335e^-4	0.885	UTR_3_PRIME dpr12
3R	18600114	3R_18600114_SNP [dm3] 3R_22774392_SNP [dm6]	A	C	7.335e^-4	0.885	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other
3R	5266047	3R_5266047_SNP [dm3] 3R_9440325_SNP [dm6]	C	A	7.335e^-4	0.885	INTRON ps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15085805	3R_15085805_SNP [dm3] 3R_19260083_SNP [dm6]	C	T	7.335e^-4	0.885	UTR_3_PRIME CG14280
3R	15085809	3R_15085809_SNP [dm3] 3R_19260087_SNP [dm6]	T	A	7.335e^-4	0.885	UTR_3_PRIME CG14280
3L	11402795	3L_11402795_SNP [dm3] 3L_11409695_SNP [dm6]	C	T	7.337e^-4	0.885	INTERGENIC
3L	11402833	3L_11402833_SNP [dm3] 3L_11409733_SNP [dm6]	C	T	7.337e^-4	0.885	INTERGENIC
2L	7743361	2L_7743361_SNP [dm3] 2L_7743361_SNP [dm6]	C	T	7.357e^-4	0.885	DOWNSTREAM CG7214 INTERGENIC
3R	13418027	3R_13418027_SNP [dm3] 3R_17592305_SNP [dm6]	C	T	7.357e^-4	0.885	INTERGENIC
3R	10614051	3R_10614051_SNP [dm3] 3R_14788329_SNP [dm6]	G	A	7.360e^-4	0.885	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15274178	2R_15274178_SNP [dm3] 2R_19386673_SNP [dm6]	G	C	7.360e^-4	0.885	NON_SYNONYMOUS_CODING CG10081
3L	1639808	3L_1639808_SNP [dm3] 3L_1639808_SNP [dm6]	A	G	7.377e^-4	0.885	UTR_5_PRIME Bgb UPSTREAM metl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	1639825	3L_1639825_SNP [dm3] 3L_1639825_SNP [dm6]	G	C	7.377e^-4	0.885	UTR_5_PRIME Bgb UPSTREAM metl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	5760144	2L_5760144_SNP [dm3] 2L_5760144_SNP [dm6]	C	A	7.378e^-4	0.885	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
2L	492383	2L_492383_SNP [dm3] 2L_492383_SNP [dm6]	C	T	7.391e^-4	0.885	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	17542237	2L_17542237_SNP [dm3] 2L_17542237_SNP [dm6]	C	A	7.395e^-4	0.885	EXON CR43304
3L	19854804	3L_19854804_SNP [dm3] 3L_19861704_SNP [dm6]	C	A	7.396e^-4	0.885	DOWNSTREAM Papss EXON CR45433	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	20285579	X_20285579_SNP [dm3] X_20414552_SNP [dm6]	A	T	7.398e^-4	0.885	UPSTREAM CG15459 & 1 other INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
X	20285580	X_20285580_SNP [dm3] X_20414553_SNP [dm6]	T	C	7.398e^-4	0.885	UPSTREAM CG15459 & 1 other INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3R	24172286	3R_24172286_SNP [dm3] 3R_28346564_SNP [dm6]	A	G	7.401e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16738667	3R_16738667_SNP [dm3] 3R_20912945_SNP [dm6]	G	A	7.406e^-4	0.885	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16443388	3L_16443388_SNP [dm3] 3L_16450288_SNP [dm6]	T	C	7.406e^-4	0.885	SYNONYMOUS_CODING dsx-c73A INTRON CG33158	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14425262	3R_14425262_SNP [dm3] 3R_18599540_SNP [dm6]	C	T	7.414e^-4	0.885	SYNONYMOUS_CODING CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14884277	3R_14884277_SNP [dm3] 3R_19058555_SNP [dm6]	G	A	7.424e^-4	0.885	INTRON cdi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19956574	2R_19956574_SNP [dm3] 2R_24069051_SNP [dm6]	G	T	7.431e^-4	0.885	UTR_5_PRIME CG3209 UPSTREAM yki	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Ubx
3R	26035258	3R_26035258_SNP [dm3] 3R_30209536_SNP [dm6]	A	G	7.432e^-4	0.885	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5373054	2L_5373054_SNP [dm3] 2L_5373054_SNP [dm6]	A	G	7.442e^-4	0.885	INTERGENIC
2R	13620659	2R_13620659_SNP [dm3] 2R_17733154_SNP [dm6]	A	G	7.453e^-4	0.885	UPSTREAM CG34195 DOWNSTREAM CG4984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13620716	2R_13620716_SNP [dm3] 2R_17733211_SNP [dm6]	T	A	7.453e^-4	0.885	UPSTREAM CG34195 DOWNSTREAM CG4984 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13621034	2R_13621034_SNP [dm3] 2R_17733529_SNP [dm6]	C	T	7.453e^-4	0.885	DOWNSTREAM CG4984 & 2 others INTRON CG34195	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	4950552	2R_4950552_SNP [dm3] 2R_9063047_SNP [dm6]	G	T	7.453e^-4	0.885	INTRON ana	regulatory region REDfly_CRMs
2R	4950653	2R_4950653_SNP [dm3] 2R_9063148_SNP [dm6]	G	T	7.453e^-4	0.885	INTRON ana	regulatory region REDfly_CRMs
X	11597497	X_11597497_SNP [dm3] X_11703464_SNP [dm6]	A	G	7.453e^-4	0.885	DOWNSTREAM CG2444 INTRON PhKgamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11597519	X_11597519_SNP [dm3] X_11703486_SNP [dm6]	C	T	7.453e^-4	0.885	DOWNSTREAM CG2444 INTRON PhKgamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2481696	3L_2481696_SNP [dm3] 3L_2481696_SNP [dm6]	C	A	7.456e^-4	0.885	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	964153	3L_964153_SNP [dm3] 3L_964153_SNP [dm6]	T	C	7.464e^-4	0.885	INTRON Glut1
3L	964192	3L_964192_SNP [dm3] 3L_964192_SNP [dm6]	T	C	7.464e^-4	0.885	INTRON Glut1
3L	964204	3L_964204_SNP [dm3] 3L_964204_SNP [dm6]	G	A	7.464e^-4	0.885	INTRON Glut1
3R	26925817	3R_26925817_SNP [dm3] 3R_31100095_SNP [dm6]	T	C	7.485e^-4	0.885	NON_SYNONYMOUS_CODING CG15553
3L	1182152	3L_1182152_SNP [dm3] 3L_1182152_SNP [dm6]	C	T	7.498e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11638459	2L_11638459_SNP [dm3] 2L_11638459_SNP [dm6]	C	A	7.515e^-4	0.885	INTERGENIC
3R	13961335	3R_13961335_INS [dm3] 3R_18135613_INS [dm6]	G	GA	7.518e^-4	0.885	DOWNSTREAM sr INTERGENIC
3L	5935798	3L_5935798_SNP [dm3] 3L_5942698_SNP [dm6]	C	A	7.518e^-4	0.885	INTRON CG33993
3R	7310106	3R_7310106_SNP [dm3] 3R_11484384_SNP [dm6]	C	G	7.539e^-4	0.885	INTERGENIC
3R	25797820	3R_25797820_SNP [dm3] 3R_29972098_SNP [dm6]	G	A	7.545e^-4	0.885	INTERGENIC
2L	1074962	2L_1074962_SNP [dm3] 2L_1074962_SNP [dm6]	T	C	7.556e^-4	0.885	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	13950997	2L_13950997_SNP [dm3] 2L_13950997_SNP [dm6]	G	C	7.570e^-4	0.885	INTRON Ance-3
X	16661280	X_16661280_SNP [dm3] X_16767247_SNP [dm6]	T	A	7.570e^-4	0.885	INTRON if
2L	10085669	2L_10085669_SNP [dm3] 2L_10085669_SNP [dm6]	C	T	7.571e^-4	0.885	INTRON CG44153
3R	9821791	3R_9821791_SNP [dm3] 3R_13996069_SNP [dm6]	C	G	7.574e^-4	0.885	INTRON rdx
3L	8151147	3L_8151147_SNP [dm3] 3L_8158047_SNP [dm6]	T	C	7.597e^-4	0.885	INTRON CG42445
3R	18739671	3R_18739671_SNP [dm3] 3R_22913949_SNP [dm6]	C	A	7.632e^-4	0.885	INTRON klg
2L	20270266	2L_20270266_SNP [dm3] 2L_20270266_SNP [dm6]	A	T	7.638e^-4	0.885	INTERGENIC
2L	4878122	2L_4878122_SNP [dm3] 2L_4878122_SNP [dm6]	T	C	7.641e^-4	0.885	UTR_3_PRIME Cf2
2R	15329455	2R_15329455_SNP [dm3] 2R_19441950_SNP [dm6]	T	G	7.658e^-4	0.885	UPSTREAM RpL11 DOWNSTREAM Spt5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	9005935	3R_9005935_SNP [dm3] 3R_13180213_SNP [dm6]	A	C	7.666e^-4	0.885	INTERGENIC
3R	20028820	3R_20028820_SNP [dm3] 3R_24203098_SNP [dm6]	G	A	7.675e^-4	0.885	INTRON twin
3R	4587621	3R_4587621_INS [dm3] 3R_8761899_INS [dm6]	A	AT	7.681e^-4	0.885	INTRON CG11768 & 1 other
3R	10626966	3R_10626966_SNP [dm3] 3R_14801244_SNP [dm6]	G	T	7.683e^-4	0.885	UPSTREAM CG14857 DOWNSTREAM CG14856 INTERGENIC
3L	7909123	3L_7909123_SNP [dm3] 3L_7916023_SNP [dm6]	G	C	7.692e^-4	0.885	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18357087	3R_18357087_SNP [dm3] 3R_22531365_SNP [dm6]	G	A	7.693e^-4	0.885	SYNONYMOUS_CODING CG33093 UPSTREAM CG33099 DOWNSTREAM CG5326	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18208153	3L_18208153_SNP [dm3] 3L_18215053_SNP [dm6]	T	A	7.699e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	24224152	3R_24224152_SNP [dm3] 3R_28398430_SNP [dm6]	G	A	7.699e^-4	0.885	INTERGENIC
2L	1298960	2L_1298960_SNP [dm3] 2L_1298960_SNP [dm6]	A	T	7.727e^-4	0.885	INTERGENIC
2L	4428392	2L_4428392_SNP [dm3] 2L_4428392_SNP [dm6]	G	T	7.730e^-4	0.885	INTRON CG15431
2L	7742428	2L_7742428_SNP [dm3] 2L_7742428_SNP [dm6]	A	T	7.730e^-4	0.885	UPSTREAM Acp1 INTERGENIC
3L	3905057	3L_3905057_SNP [dm3] 3L_3905057_SNP [dm6]	C	T	7.731e^-4	0.885	UPSTREAM ida DOWNSTREAM Sc2 INTERGENIC
3R	17559641	3R_17559641_SNP [dm3] 3R_21733919_SNP [dm6]	C	T	7.744e^-4	0.885	INTERGENIC
3R	17559683	3R_17559683_SNP [dm3] 3R_21733961_SNP [dm6]	A	T	7.744e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

productivity1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results