DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.640e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1304 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	1068382	2L_1068382_SNP [dm3] 2L_1068382_SNP [dm6]	G	A	1.256e^-6	0.896	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13541893	3L_13541893_INS [dm3] 3L_13548793_INS [dm6]	C	CGGACAC	1.621e^-6	0.896	INTRON bru-3
X	18249664	X_18249664_INS [dm3] X_18355631_INS [dm6]	G	GTAGGCGG	2.843e^-6	0.896	INTRON CG6123
2R	13993156	2R_13993156_SNP [dm3] 2R_18105651_SNP [dm6]	T	G	4.815e^-6	0.896	INTRON CG5756
X	2730005	X_2730005_SNP [dm3] X_2835972_SNP [dm6]	T	C	4.832e^-6	0.896	INTRON kirre
3R	927064	3R_927064_SNP [dm3] 3R_5101342_SNP [dm6]	G	T	7.720e^-6	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11253610	3L_11253610_SNP [dm3] 3L_11260510_SNP [dm6]	C	T	7.797e^-6	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	25365859	3R_25365859_SNP [dm3] 3R_29540137_SNP [dm6]	T	A	9.235e^-6	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20530232	X_20530232_SNP [dm3] X_20659205_SNP [dm6]	A	G	1.020e^-5	0.896	INTRON Cyp6v1
2L	13983795	2L_13983795_SNP [dm3] 2L_13983795_SNP [dm6]	T	G	1.086e^-5	0.896	SPLICE_SITE_REGION rk DOWNSTREAM NimC2 INTRON rk	TF binding site mE1_TFBS_chinmo
2R	20188889	2R_20188889_SNP [dm3] 2R_24301366_SNP [dm6]	T	G	1.297e^-5	0.896	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15343672	2L_15343672_DEL [dm3] 2L_15343672_DEL [dm6]	AAAT	A	1.338e^-5	0.896	INTERGENIC
2L	15343677	2L_15343677_SNP [dm3] 2L_15343677_SNP [dm6]	A	T	1.338e^-5	0.896	INTERGENIC
2L	15343679	2L_15343679_SNP [dm3] 2L_15343679_SNP [dm6]	T	C	1.338e^-5	0.896	INTERGENIC
2L	15343680	2L_15343680_SNP [dm3] 2L_15343680_SNP [dm6]	T	A	1.338e^-5	0.896	INTERGENIC
2L	15343689	2L_15343689_SNP [dm3] 2L_15343689_SNP [dm6]	T	A	1.338e^-5	0.896	INTERGENIC
3R	10603796	3R_10603796_SNP [dm3] 3R_14778074_SNP [dm6]	C	T	1.577e^-5	0.896	INTRON jvl
3R	9151822	3R_9151822_SNP [dm3] 3R_13326100_SNP [dm6]	T	C	1.667e^-5	0.896	INTERGENIC
X	20530224	X_20530224_SNP [dm3] X_20659197_SNP [dm6]	A	G	1.706e^-5	0.896	INTRON Cyp6v1
3R	14423644	3R_14423644_SNP [dm3] 3R_18597922_SNP [dm6]	G	C	1.877e^-5	0.896	UPSTREAM CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1051015	2L_1051015_SNP [dm3] 2L_1051015_SNP [dm6]	T	A	1.970e^-5	0.896	UTR_3_PRIME S DOWNSTREAM S
2L	1650899	2L_1650899_DEL [dm3] 2L_1650899_DEL [dm6]	CC	C	2.129e^-5	0.896	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15343669	2L_15343669_SNP [dm3] 2L_15343669_SNP [dm6]	A	T	2.190e^-5	0.896	INTERGENIC
2L	15343684	2L_15343684_MNP [dm3] 2L_15343684_MNP [dm6]	GTT	ACA	2.190e^-5	0.896	INTERGENIC
2L	15343691	2L_15343691_DEL [dm3] 2L_15343691_DEL [dm6]	CAC	A	2.190e^-5	0.896	INTERGENIC
2L	1050940	2L_1050940_SNP [dm3] 2L_1050940_SNP [dm6]	G	T	2.217e^-5	0.896	UTR_3_PRIME S DOWNSTREAM S
2L	1050942	2L_1050942_SNP [dm3] 2L_1050942_SNP [dm6]	A	T	2.217e^-5	0.896	UTR_3_PRIME S DOWNSTREAM S
X	17167501	X_17167501_SNP [dm3] X_17273468_SNP [dm6]	A	G	2.291e^-5	0.896	INTRON f	TF binding site mE1_TFBS_cad
3L	14642070	3L_14642070_SNP [dm3] 3L_14648970_SNP [dm6]	C	T	2.568e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642095	3L_14642095_SNP [dm3] 3L_14648995_SNP [dm6]	T	A	2.568e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642098	3L_14642098_SNP [dm3] 3L_14648998_SNP [dm6]	A	T	2.568e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642110	3L_14642110_SNP [dm3] 3L_14649010_SNP [dm6]	T	C	2.568e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11618443	3R_11618443_SNP [dm3] 3R_15792721_SNP [dm6]	A	G	2.613e^-5	0.896	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3L	2627277	3L_2627277_SNP [dm3] 3L_2627277_SNP [dm6]	A	G	2.636e^-5	0.896	INTRON Pxn
3L	11513577	3L_11513577_DEL [dm3] 3L_11520477_DEL [dm6]	TTTATT	T	2.765e^-5	0.896	DOWNSTREAM CG11714 INTRON Fuca
X	20534979	X_20534979_INS [dm3] X_20663952_INS [dm6]	G	GGTCG	2.824e^-5	0.896	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	13321376	2L_13321376_SNP [dm3] 2L_13321376_SNP [dm6]	A	T	2.971e^-5	0.896	INTRON CG43778
2L	12807907	2L_12807907_SNP [dm3] 2L_12807907_SNP [dm6]	A	G	3.031e^-5	0.896	EXON CR43818
3L	2998162	3L_2998162_SNP [dm3] 3L_2998162_SNP [dm6]	A	T	3.206e^-5	0.896	INTERGENIC
3L	14642039	3L_14642039_SNP [dm3] 3L_14648939_SNP [dm6]	T	G	3.431e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642051	3L_14642051_SNP [dm3] 3L_14648951_SNP [dm6]	T	C	3.431e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	24366641	3R_24366641_SNP [dm3] 3R_28540919_SNP [dm6]	G	A	3.573e^-5	0.896	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12290341	3L_12290341_INS [dm3] 3L_12297241_INS [dm6]	T	TCCCAGTCCACTTT...	3.597e^-5	0.896	INTERGENIC
2L	11361516	2L_11361516_SNP [dm3] 2L_11361516_SNP [dm6]	T	C	3.708e^-5	0.896	INTRON salr	regulatory region REDfly_CRMs
3L	14642109	3L_14642109_SNP [dm3] 3L_14649009_SNP [dm6]	A	T	3.866e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642171	3L_14642171_SNP [dm3] 3L_14649071_SNP [dm6]	A	T	3.892e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9585406	2L_9585406_SNP [dm3] 2L_9585406_SNP [dm6]	C	G	3.894e^-5	0.896	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	7944635	2L_7944635_SNP [dm3] 2L_7944635_SNP [dm6]	C	T	4.139e^-5	0.896	INTRON Snoo
3L	14642038	3L_14642038_SNP [dm3] 3L_14648938_SNP [dm6]	T	A	4.139e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	20529187	X_20529187_SNP [dm3] X_20658160_SNP [dm6]	T	C	4.249e^-5	0.896	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
X	20528986	X_20528986_SNP [dm3] X_20657959_SNP [dm6]	G	C	4.432e^-5	0.896	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
3R	9751978	3R_9751978_SNP [dm3] 3R_13926256_SNP [dm6]	A	G	4.473e^-5	0.896	INTERGENIC
2R	2463585	2R_2463585_SNP [dm3] 2R_6576080_SNP [dm6]	C	A	4.481e^-5	0.896	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10219833	3L_10219833_SNP [dm3] 3L_10226733_SNP [dm6]	A	C	4.591e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219855	3L_10219855_SNP [dm3] 3L_10226755_SNP [dm6]	G	T	4.591e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25365840	3R_25365840_SNP [dm3] 3R_29540118_SNP [dm6]	T	C	4.633e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14642055	3L_14642055_SNP [dm3] 3L_14648955_SNP [dm6]	A	T	4.827e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642058	3L_14642058_SNP [dm3] 3L_14648958_SNP [dm6]	G	A	4.827e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642078	3L_14642078_MNP [dm3] 3L_14648978_MNP [dm6]	GGG	AAA	4.827e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3039454	3L_3039454_SNP [dm3] 3L_3039454_SNP [dm6]	T	C	4.871e^-5	0.896	SYNONYMOUS_CODING CG2162	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	3714053	2L_3714053_SNP [dm3] 2L_3714053_SNP [dm6]	G	C	4.892e^-5	0.896	UPSTREAM CG31955 & 1 other INTRON CG2818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24477152	3R_24477152_SNP [dm3] 3R_28651430_SNP [dm6]	G	A	4.939e^-5	0.896	UPSTREAM CG31050 INTERGENIC
3R	24477187	3R_24477187_SNP [dm3] 3R_28651465_SNP [dm6]	A	T	4.939e^-5	0.896	UPSTREAM CG31050 INTERGENIC
3R	24477204	3R_24477204_SNP [dm3] 3R_28651482_SNP [dm6]	T	A	4.939e^-5	0.896	INTERGENIC
3R	24477211	3R_24477211_SNP [dm3] 3R_28651489_SNP [dm6]	T	A	4.939e^-5	0.896	INTERGENIC
3R	24477212	3R_24477212_SNP [dm3] 3R_28651490_SNP [dm6]	C	T	4.939e^-5	0.896	INTERGENIC
2R	6379235	2R_6379235_SNP [dm3] 2R_10491730_SNP [dm6]	C	T	4.993e^-5	0.896	UTR_3_PRIME lola INTRON lola
2R	6508001	2R_6508001_SNP [dm3] 2R_10620496_SNP [dm6]	A	C	4.993e^-5	0.896	INTRON CG11883
3R	12048597	3R_12048597_SNP [dm3] 3R_16222875_SNP [dm6]	C	G	5.026e^-5	0.896	UPSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9088728	3L_9088728_SNP [dm3] 3L_9095628_SNP [dm6]	C	T	5.044e^-5	0.896	DOWNSTREAM CG32032 INTERGENIC
X	16082234	X_16082234_SNP [dm3] X_16188201_SNP [dm6]	T	C	5.104e^-5	0.896	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	1650910	2L_1650910_SNP [dm3] 2L_1650910_SNP [dm6]	G	A	5.321e^-5	0.896	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11471496	2R_11471496_SNP [dm3] 2R_15583991_SNP [dm6]	T	A	5.347e^-5	0.896	INTERGENIC
3R	14423609	3R_14423609_SNP [dm3] 3R_18597887_SNP [dm6]	T	G	5.373e^-5	0.896	UPSTREAM CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14642063	3L_14642063_SNP [dm3] 3L_14648963_SNP [dm6]	T	G	5.863e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	12408082	2R_12408082_SNP [dm3] 2R_16520577_SNP [dm6]	T	G	5.885e^-5	0.896	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	11618479	3R_11618479_SNP [dm3] 3R_15792757_SNP [dm6]	G	C	6.095e^-5	0.896	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
3L	957055	3L_957055_SNP [dm3] 3L_957055_SNP [dm6]	A	G	6.121e^-5	0.896	INTRON Glut1
X	20529036	X_20529036_SNP [dm3] X_20658009_SNP [dm6]	G	T	6.377e^-5	0.896	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
3L	14642089	3L_14642089_SNP [dm3] 3L_14648989_SNP [dm6]	A	T	6.437e^-5	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	970831	3L_970831_SNP [dm3] 3L_970831_SNP [dm6]	A	G	6.450e^-5	0.896	INTRON Glut1
3R	25024503	3R_25024503_SNP [dm3] 3R_29198781_SNP [dm6]	G	A	6.519e^-5	0.896	INTRON CG14515
X	5591823	X_5591823_SNP [dm3] X_5697790_SNP [dm6]	A	G	6.567e^-5	0.896	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12408099	2R_12408099_SNP [dm3] 2R_16520594_SNP [dm6]	C	T	6.648e^-5	0.896	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	6508615	2R_6508615_SNP [dm3] 2R_10621110_SNP [dm6]	A	G	6.664e^-5	0.896	INTRON CG11883
3R	11140143	3R_11140143_SNP [dm3] 3R_15314421_SNP [dm6]	T	C	6.664e^-5	0.896	INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	21910607	X_21910607_SNP [dm3] X_22508771_SNP [dm6]	C	A	6.741e^-5	0.896	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20527032	X_20527032_SNP [dm3] X_20656005_SNP [dm6]	T	G	6.749e^-5	0.896	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11361515	2L_11361515_SNP [dm3] 2L_11361515_SNP [dm6]	A	G	6.751e^-5	0.896	INTRON salr	regulatory region REDfly_CRMs
2R	19685444	2R_19685444_SNP [dm3] 2R_23797921_SNP [dm6]	C	T	6.908e^-5	0.896	UTR_5_PRIME CG9850	TF binding site mE1_TFBS_HSA
3L	17925410	3L_17925410_SNP [dm3] 3L_17932310_SNP [dm6]	C	T	6.933e^-5	0.896	INTERGENIC
2L	11921294	2L_11921294_SNP [dm3] 2L_11921294_SNP [dm6]	T	C	7.009e^-5	0.896	INTRON Pde1c
2R	11059590	2R_11059590_SNP [dm3] 2R_15172085_SNP [dm6]	T	C	7.017e^-5	0.896	INTRON igl
2R	6508603	2R_6508603_SNP [dm3] 2R_10621098_SNP [dm6]	T	G	7.017e^-5	0.896	INTRON CG11883
3R	18357577	3R_18357577_SNP [dm3] 3R_22531855_SNP [dm6]	A	G	7.116e^-5	0.896	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
X	9790622	X_9790622_SNP [dm3] X_9896589_SNP [dm6]	G	A	7.197e^-5	0.896	INTRON CG15249
3R	10604335	3R_10604335_SNP [dm3] 3R_14778613_SNP [dm6]	G	A	7.218e^-5	0.896	INTRON jvl
2L	7329612	2L_7329612_SNP [dm3] 2L_7329612_SNP [dm6]	C	G	7.473e^-5	0.896	UPSTREAM CR45304 INTERGENIC
2L	11920331	2L_11920331_SNP [dm3] 2L_11920331_SNP [dm6]	G	T	7.518e^-5	0.896	INTRON Pde1c
2L	11920411	2L_11920411_SNP [dm3] 2L_11920411_SNP [dm6]	T	C	7.518e^-5	0.896	INTRON Pde1c
2L	9030749	2L_9030749_SNP [dm3] 2L_9030749_SNP [dm6]	G	C	7.544e^-5	0.896	INTRON CG9582 & 1 other
X	4519489	X_4519489_SNP [dm3] X_4625456_SNP [dm6]	C	T	7.558e^-5	0.896	SYNONYMOUS_CODING peb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	7986614	3L_7986614_SNP [dm3] 3L_7993514_SNP [dm6]	C	G	7.576e^-5	0.896	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	18249638	X_18249638_DEL [dm3] X_18355605_DEL [dm6]	CTGCC	C	7.590e^-5	0.896	INTRON CG6123
X	17673226	X_17673226_SNP [dm3] X_17779193_SNP [dm6]	A	C	7.768e^-5	0.896	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	7835242	3L_7835242_SNP [dm3] 3L_7842142_SNP [dm6]	A	T	7.987e^-5	0.896	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10688546	2L_10688546_SNP [dm3] 2L_10688546_SNP [dm6]	T	A	8.006e^-5	0.896	DOWNSTREAM CG7294 INTERGENIC
X	17673209	X_17673209_INS [dm3] X_17779176_INS [dm6]	T	TCGCCATAGAACT...	8.009e^-5	0.896	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673211	X_17673211_SNP [dm3] X_17779178_SNP [dm6]	T	G	8.009e^-5	0.896	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673222	X_17673222_SNP [dm3] X_17779189_SNP [dm6]	A	G	8.009e^-5	0.896	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673229	X_17673229_SNP [dm3] X_17779196_SNP [dm6]	C	T	8.009e^-5	0.896	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673231	X_17673231_SNP [dm3] X_17779198_SNP [dm6]	T	C	8.009e^-5	0.896	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	17673233	X_17673233_SNP [dm3] X_17779200_SNP [dm6]	A	G	8.009e^-5	0.896	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	10219735	3L_10219735_SNP [dm3] 3L_10226635_SNP [dm6]	G	A	8.098e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219776	3L_10219776_SNP [dm3] 3L_10226676_SNP [dm6]	C	T	8.098e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13730433	3R_13730433_SNP [dm3] 3R_17904711_SNP [dm6]	G	A	8.166e^-5	0.896	INTRON Rim
X	5591812	X_5591812_SNP [dm3] X_5697779_SNP [dm6]	T	A	8.229e^-5	0.896	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2610285	3L_2610285_SNP [dm3] 3L_2610285_SNP [dm6]	C	T	8.240e^-5	0.896	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1085719	2L_1085719_SNP [dm3] 2L_1085719_SNP [dm6]	G	C	8.251e^-5	0.896	DOWNSTREAM Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	25024504	3R_25024504_SNP [dm3] 3R_29198782_SNP [dm6]	G	A	8.349e^-5	0.896	INTRON CG14515
3R	25024506	3R_25024506_SNP [dm3] 3R_29198784_SNP [dm6]	T	A	8.349e^-5	0.896	INTRON CG14515
3R	24217371	3R_24217371_SNP [dm3] 3R_28391649_SNP [dm6]	C	A	8.451e^-5	0.896	INTERGENIC
X	6396781	X_6396781_SNP [dm3] X_6502748_SNP [dm6]	A	T	8.487e^-5	0.896	INTRON CG42340
2L	9986084	2L_9986084_SNP [dm3] 2L_9986084_SNP [dm6]	G	A	8.535e^-5	0.896	INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	15535922	2L_15535922_SNP [dm3] 2L_15535922_SNP [dm6]	A	T	8.579e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	17673225	X_17673225_SNP [dm3] X_17779192_SNP [dm6]	C	T	8.942e^-5	0.896	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	4427850	2L_4427850_SNP [dm3] 2L_4427850_SNP [dm6]	A	G	8.963e^-5	0.896	INTRON CG15431
2L	1085111	2L_1085111_SNP [dm3] 2L_1085111_SNP [dm6]	G	A	9.139e^-5	0.896	SYNONYMOUS_CODING CG4629 UTR_3_PRIME Atg4a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1067665	2L_1067665_SNP [dm3] 2L_1067665_SNP [dm6]	G	A	9.371e^-5	0.896	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	11980266	2R_11980266_SNP [dm3] 2R_16092761_SNP [dm6]	G	A	9.419e^-5	0.896	INTRON Dg
3L	2708979	3L_2708979_SNP [dm3] 3L_2708979_SNP [dm6]	T	C	9.447e^-5	0.896	INTRON Fife
X	20526314	X_20526314_SNP [dm3] X_20655287_SNP [dm6]	C	T	9.649e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11971745	2L_11971745_SNP [dm3] 2L_11971745_SNP [dm6]	C	T	9.830e^-5	0.896	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11971906	2L_11971906_SNP [dm3] 2L_11971906_SNP [dm6]	A	T	9.830e^-5	0.896	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	19822533	2L_19822533_DEL [dm3] 2L_19822533_DEL [dm6]	CC	C	9.834e^-5	0.896	INTRON sick
X	20527070	X_20527070_SNP [dm3] X_20656043_SNP [dm6]	G	C	9.944e^-5	0.896	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20527076	X_20527076_SNP [dm3] X_20656049_SNP [dm6]	A	G	9.944e^-5	0.896	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20527093	X_20527093_SNP [dm3] X_20656066_SNP [dm6]	A	T	9.944e^-5	0.896	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11920401	2L_11920401_SNP [dm3] 2L_11920401_SNP [dm6]	A	C	9.990e^-5	0.896	INTRON Pde1c
3L	10219732	3L_10219732_INS [dm3] 3L_10226632_INS [dm6]	T	TTTTTAT	1.038e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219734	3L_10219734_SNP [dm3] 3L_10226634_SNP [dm6]	C	A	1.038e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219737	3L_10219737_INS [dm3] 3L_10226637_INS [dm6]	G	GTATTT	1.038e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219743	3L_10219743_SNP [dm3] 3L_10226643_SNP [dm6]	T	A	1.038e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219744	3L_10219744_SNP [dm3] 3L_10226644_SNP [dm6]	A	C	1.038e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219750	3L_10219750_INS [dm3] 3L_10226650_INS [dm6]	A	AAGTTCCTCAAT...	1.038e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219757	3L_10219757_MNP [dm3] 3L_10226657_MNP [dm6]	CAA	TGT	1.038e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219761	3L_10219761_INS [dm3] 3L_10226661_INS [dm6]	T	TATATACAGC	1.038e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10219790	3L_10219790_SNP [dm3] 3L_10226690_SNP [dm6]	A	G	1.038e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26119375	3R_26119375_SNP [dm3] 3R_30293653_SNP [dm6]	T	A	1.051e^-4	0.896	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19383891	3L_19383891_SNP [dm3] 3L_19390791_SNP [dm6]	A	G	1.051e^-4	0.896	DOWNSTREAM ms_3_76Ba INTRON CG32206	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
2R	11643817	2R_11643817_SNP [dm3] 2R_15756312_SNP [dm6]	A	G	1.052e^-4	0.896	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10167949	2L_10167949_SNP [dm3] 2L_10167949_SNP [dm6]	C	T	1.058e^-4	0.896	INTRON CG44153
3R	26119383	3R_26119383_SNP [dm3] 3R_30293661_SNP [dm6]	G	C	1.058e^-4	0.896	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7632015	2L_7632015_SNP [dm3] 2L_7632015_SNP [dm6]	C	G	1.082e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	20136566	2L_20136566_SNP [dm3] 2L_20136566_SNP [dm6]	G	T	1.101e^-4	0.896	INTERGENIC
3L	22172807	3L_22172807_SNP [dm3] 3L_22179707_SNP [dm6]	G	A	1.103e^-4	0.896	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	5021943	3L_5021943_SNP [dm3] 3L_5021943_SNP [dm6]	T	A	1.116e^-4	0.896	INTRON Con	TF binding site mE1_TFBS_chinmo
3L	14641921	3L_14641921_SNP [dm3] 3L_14648821_SNP [dm6]	A	G	1.117e^-4	0.896	INTRON dlp	TF binding site mE1_TFBS_HSA
3L	22171288	3L_22171288_DEL [dm3] 3L_22178188_DEL [dm6]	AT	A	1.125e^-4	0.896	INTRON olf413	TF binding site mE1_TFBS_sens
2R	7409690	2R_7409690_SNP [dm3] 2R_11522185_SNP [dm6]	A	C	1.152e^-4	0.896	INTERGENIC
2R	3263958	2R_3263958_SNP [dm3] 2R_7376453_SNP [dm6]	A	T	1.156e^-4	0.896	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
3R	8345262	3R_8345262_SNP [dm3] 3R_12519540_SNP [dm6]	T	C	1.161e^-4	0.896	INTRON Octbeta3R
2R	17939476	2R_17939476_SNP [dm3] 2R_22051971_SNP [dm6]	G	C	1.173e^-4	0.896	INTERGENIC
3R	24807557	3R_24807557_SNP [dm3] 3R_28981835_SNP [dm6]	C	T	1.197e^-4	0.896	INTERGENIC
2L	1299018	2L_1299018_SNP [dm3] 2L_1299018_SNP [dm6]	A	T	1.198e^-4	0.896	INTERGENIC
2L	1299028	2L_1299028_SNP [dm3] 2L_1299028_SNP [dm6]	T	C	1.198e^-4	0.896	INTERGENIC
2L	15343588	2L_15343588_SNP [dm3] 2L_15343588_SNP [dm6]	T	A	1.205e^-4	0.896	INTERGENIC
3R	10604354	3R_10604354_SNP [dm3] 3R_14778632_SNP [dm6]	T	G	1.206e^-4	0.896	INTRON jvl
3R	25024432	3R_25024432_SNP [dm3] 3R_29198710_SNP [dm6]	A	C	1.221e^-4	0.896	INTRON CG14515
2R	12456846	2R_12456846_SNP [dm3] 2R_16569341_SNP [dm6]	G	A	1.234e^-4	0.896	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3286114	2L_3286114_SNP [dm3] 2L_3286114_SNP [dm6]	C	T	1.239e^-4	0.896	INTERGENIC
2L	6220938	2L_6220938_SNP [dm3] 2L_6220938_SNP [dm6]	C	G	1.247e^-4	0.896	INTERGENIC
3L	2610215	3L_2610215_SNP [dm3] 3L_2610215_SNP [dm6]	A	T	1.251e^-4	0.896	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_chinmo
3L	10219749	3L_10219749_SNP [dm3] 3L_10226649_SNP [dm6]	C	T	1.260e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4316624	2L_4316624_SNP [dm3] 2L_4316624_SNP [dm6]	G	A	1.267e^-4	0.896	DOWNSTREAM tutl INTRON tutl
3L	9547837	3L_9547837_SNP [dm3] 3L_9554737_SNP [dm6]	C	T	1.268e^-4	0.896	INTRON CG42673
X	11911521	X_11911521_DEL [dm3] X_12017488_DEL [dm6]	TCAT	T	1.272e^-4	0.896	DOWNSTREAM regucalcin	TF binding site mE1_TFBS_HSA
2L	3750776	2L_3750776_SNP [dm3] 2L_3750776_SNP [dm6]	A	G	1.297e^-4	0.896	INTRON CG10019
2L	3750808	2L_3750808_SNP [dm3] 2L_3750808_SNP [dm6]	C	T	1.297e^-4	0.896	NON_SYNONYMOUS_CODING CG10019
2L	1085695	2L_1085695_SNP [dm3] 2L_1085695_SNP [dm6]	A	G	1.301e^-4	0.896	DOWNSTREAM Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	1085698	2L_1085698_SNP [dm3] 2L_1085698_SNP [dm6]	G	A	1.301e^-4	0.896	DOWNSTREAM Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	17693124	3L_17693124_SNP [dm3] 3L_17700024_SNP [dm6]	G	T	1.305e^-4	0.896	INTRON Ccn
2L	11921171	2L_11921171_SNP [dm3] 2L_11921171_SNP [dm6]	C	T	1.308e^-4	0.896	INTRON Pde1c
2L	9507277	2L_9507277_SNP [dm3] 2L_9507277_SNP [dm6]	G	T	1.319e^-4	0.896	INTRON CG33298
3L	2989975	3L_2989975_SNP [dm3] 3L_2989975_SNP [dm6]	T	G	1.334e^-4	0.896	INTERGENIC
3L	2610341	3L_2610341_SNP [dm3] 3L_2610341_SNP [dm6]	G	A	1.344e^-4	0.896	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3750854	2L_3750854_SNP [dm3] 2L_3750854_SNP [dm6]	G	A	1.347e^-4	0.896	SYNONYMOUS_CODING CG10019
2L	1726719	2L_1726719_SNP [dm3] 2L_1726719_SNP [dm6]	A	C	1.351e^-4	0.896	INTRON Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25526883	3R_25526883_SNP [dm3] 3R_29701161_SNP [dm6]	A	T	1.377e^-4	0.896	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	25526886	3R_25526886_SNP [dm3] 3R_29701164_SNP [dm6]	G	T	1.377e^-4	0.896	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	25526896	3R_25526896_SNP [dm3] 3R_29701174_SNP [dm6]	G	T	1.377e^-4	0.896	INTERGENIC	enhancer mE1_CBP_Enhancers
2R	6954898	2R_6954898_SNP [dm3] 2R_11067393_SNP [dm6]	T	C	1.379e^-4	0.896	INTRON luna	TF binding site mE1_TFBS_chinmo
2L	7631627	2L_7631627_SNP [dm3] 2L_7631627_SNP [dm6]	T	A	1.391e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	7631672	2L_7631672_SNP [dm3] 2L_7631672_SNP [dm6]	A	T	1.391e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	11874867	2R_11874867_SNP [dm3] 2R_15987362_SNP [dm6]	T	G	1.393e^-4	0.896	UPSTREAM CR45021 & 1 other INTRON Strn-Mlck
X	6593783	X_6593783_SNP [dm3] X_6699750_SNP [dm6]	T	A	1.393e^-4	0.896	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6593967	X_6593967_SNP [dm3] X_6699934_SNP [dm6]	G	A	1.393e^-4	0.896	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8345270	3R_8345270_SNP [dm3] 3R_12519548_SNP [dm6]	T	A	1.403e^-4	0.896	INTRON Octbeta3R
3L	10199531	3L_10199531_SNP [dm3] 3L_10206431_SNP [dm6]	A	T	1.433e^-4	0.896	DOWNSTREAM CR44538 INTERGENIC
3L	3569365	3L_3569365_SNP [dm3] 3L_3569365_SNP [dm6]	A	T	1.447e^-4	0.896	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	6737221	2R_6737221_SNP [dm3] 2R_10849716_SNP [dm6]	A	T	1.448e^-4	0.896	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6737223	2R_6737223_SNP [dm3] 2R_10849718_SNP [dm6]	A	C	1.448e^-4	0.896	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18758337	2R_18758337_SNP [dm3] 2R_22870814_SNP [dm6]	C	T	1.475e^-4	0.896	UPSTREAM CG13532 DOWNSTREAM fd59A INTERGENIC
2R	18758357	2R_18758357_SNP [dm3] 2R_22870834_SNP [dm6]	G	T	1.475e^-4	0.896	UPSTREAM CG13532 DOWNSTREAM fd59A INTERGENIC	TF binding site mE1_TFBS_cad
3L	5956442	3L_5956442_SNP [dm3] 3L_5963342_SNP [dm6]	G	C	1.501e^-4	0.896	INTERGENIC
3R	14423766	3R_14423766_SNP [dm3] 3R_18598044_SNP [dm6]	C	T	1.505e^-4	0.896	SYNONYMOUS_CODING CG14304 UPSTREAM CG14305 INTRON qin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5286160	3R_5286160_SNP [dm3] 3R_9460438_SNP [dm6]	T	A	1.516e^-4	0.896	START_GAINED GstZ2 UTR_5_PRIME GstZ2 DOWNSTREAM CG16779	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	5286239	3R_5286239_SNP [dm3] 3R_9460517_SNP [dm6]	C	T	1.516e^-4	0.896	UTR_5_PRIME GstZ2 DOWNSTREAM CG16779	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10752924	2L_10752924_SNP [dm3] 2L_10752924_SNP [dm6]	G	T	1.525e^-4	0.896	INTRON CG17124	TF binding site mE1_TFBS_cad
3R	9299421	3R_9299421_SNP [dm3] 3R_13473699_SNP [dm6]	C	T	1.525e^-4	0.896	INTERGENIC
3R	26974822	3R_26974822_SNP [dm3] 3R_31149100_SNP [dm6]	A	T	1.527e^-4	0.896	INTRON Gycbeta100B
3L	8757018	3L_8757018_DEL [dm3] 3L_8763918_DEL [dm6]	AT	A	1.552e^-4	0.896	INTRON Fhos
3L	2659386	3L_2659386_SNP [dm3] 3L_2659386_SNP [dm6]	T	G	1.555e^-4	0.896	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
3L	6600205	3L_6600205_SNP [dm3] 3L_6607105_SNP [dm6]	T	G	1.555e^-4	0.896	INTRON CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20526929	X_20526929_SNP [dm3] X_20655902_SNP [dm6]	C	T	1.567e^-4	0.896	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9020214	3L_9020214_SNP [dm3] 3L_9027114_SNP [dm6]	A	G	1.568e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11026843	3L_11026843_SNP [dm3] 3L_11033743_SNP [dm6]	C	T	1.606e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1196368	2L_1196368_SNP [dm3] 2L_1196368_SNP [dm6]	C	T	1.627e^-4	0.896	SYNONYMOUS_CODING CG5001
3L	9020201	3L_9020201_SNP [dm3] 3L_9027101_SNP [dm6]	C	G	1.641e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15707777	2R_15707777_SNP [dm3] 2R_19820272_SNP [dm6]	C	T	1.644e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Kr
2L	1083669	2L_1083669_SNP [dm3] 2L_1083669_SNP [dm6]	A	G	1.649e^-4	0.896	UTR_3_PRIME Atg4a & 1 other DOWNSTREAM Atg4a
3R	26974976	3R_26974976_SNP [dm3] 3R_31149254_SNP [dm6]	C	T	1.651e^-4	0.896	INTRON Gycbeta100B
2R	10412159	2R_10412159_DEL [dm3] 2R_14524654_DEL [dm6]	GG	G	1.665e^-4	0.896	INTERGENIC
3L	17976841	3L_17976841_DEL [dm3] 3L_17983741_DEL [dm6]	CTATCACTC	C	1.669e^-4	0.896	INTRON Eip75B
3L	8757263	3L_8757263_SNP [dm3] 3L_8764163_SNP [dm6]	G	A	1.679e^-4	0.896	INTRON Fhos
3L	8756577	3L_8756577_SNP [dm3] 3L_8763477_SNP [dm6]	A	C	1.681e^-4	0.896	INTRON Fhos
3L	8756596	3L_8756596_SNP [dm3] 3L_8763496_SNP [dm6]	G	A	1.681e^-4	0.896	INTRON Fhos
3L	7986579	3L_7986579_MNP [dm3] 3L_7993479_MNP [dm6]	GTT	TAG	1.685e^-4	0.896	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	6594064	X_6594064_SNP [dm3] X_6700031_SNP [dm6]	A	C	1.711e^-4	0.896	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14642130	3L_14642130_INS [dm3] 3L_14649030_INS [dm6]	T	TTGT	1.712e^-4	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18741395	2R_18741395_SNP [dm3] 2R_22853872_SNP [dm6]	T	G	1.730e^-4	0.896	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18741492	2R_18741492_SNP [dm3] 2R_22853969_SNP [dm6]	G	A	1.730e^-4	0.896	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9547817	3L_9547817_SNP [dm3] 3L_9554717_SNP [dm6]	A	G	1.745e^-4	0.896	INTRON CG42673
2L	3714072	2L_3714072_SNP [dm3] 2L_3714072_SNP [dm6]	A	C	1.758e^-4	0.896	UPSTREAM CG31955 & 1 other INTRON CG2818	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24958211	3R_24958211_SNP [dm3] 3R_29132489_SNP [dm6]	A	G	1.777e^-4	0.896	SYNONYMOUS_CODING Vha100-1
2L	7631946	2L_7631946_SNP [dm3] 2L_7631946_SNP [dm6]	T	A	1.806e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	25836469	3R_25836469_SNP [dm3] 3R_30010747_SNP [dm6]	G	A	1.813e^-4	0.896	SYNONYMOUS_CODING CG7920 DOWNSTREAM Nlp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	2916283	3L_2916283_SNP [dm3] 3L_2916283_SNP [dm6]	A	G	1.813e^-4	0.896	SYNONYMOUS_CODING CG9970 INTRON Shab
X	20526908	X_20526908_SNP [dm3] X_20655881_SNP [dm6]	G	A	1.814e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10601952	2L_10601952_SNP [dm3] 2L_10601952_SNP [dm6]	C	T	1.816e^-4	0.896	INTRON Trim9
3R	10604306	3R_10604306_SNP [dm3] 3R_14778584_SNP [dm6]	T	C	1.817e^-4	0.896	INTRON jvl
2R	10886371	2R_10886371_SNP [dm3] 2R_14998866_SNP [dm6]	T	C	1.826e^-4	0.896	INTERGENIC
3L	15605230	3L_15605230_SNP [dm3] 3L_15612130_SNP [dm6]	G	T	1.838e^-4	0.896	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449
3L	15605236	3L_15605236_SNP [dm3] 3L_15612136_SNP [dm6]	C	T	1.838e^-4	0.896	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449
3L	14642827	3L_14642827_SNP [dm3] 3L_14649727_SNP [dm6]	G	T	1.843e^-4	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3043783	3L_3043783_SNP [dm3] 3L_3043783_SNP [dm6]	C	T	1.844e^-4	0.896	SYNONYMOUS_CODING Jafrac2 DOWNSTREAM scramb2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2414040	X_2414040_SNP [dm3] X_2520007_SNP [dm6]	C	T	1.856e^-4	0.896	INTRON trol
2L	17250611	2L_17250611_SNP [dm3] 2L_17250611_SNP [dm6]	C	T	1.871e^-4	0.896	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	7088793	3L_7088793_INS [dm3] 3L_7095693_INS [dm6]	A	AATAAA	1.886e^-4	0.896	INTRON form3	TF binding site BDTNP1_TFBS_da
3L	7088811	3L_7088811_SNP [dm3] 3L_7095711_SNP [dm6]	A	T	1.886e^-4	0.896	INTRON form3	TF binding site BDTNP1_TFBS_da
2L	14722937	2L_14722937_SNP [dm3] 2L_14722937_SNP [dm6]	G	C	1.891e^-4	0.896	INTERGENIC
2L	1298960	2L_1298960_SNP [dm3] 2L_1298960_SNP [dm6]	A	T	1.896e^-4	0.896	INTERGENIC
3R	26119373	3R_26119373_SNP [dm3] 3R_30293651_SNP [dm6]	G	C	1.907e^-4	0.896	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	822133	3R_822133_SNP [dm3] 3R_4996411_SNP [dm6]	T	C	1.924e^-4	0.896	INTRON CG2022	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5618957	2L_5618957_SNP [dm3] 2L_5618957_SNP [dm6]	C	T	1.953e^-4	0.896	DOWNSTREAM CR44796 INTERGENIC
3R	16305962	3R_16305962_SNP [dm3] 3R_20480240_SNP [dm6]	A	G	1.956e^-4	0.896	INTRON Gfrl
3R	25865027	3R_25865027_SNP [dm3] 3R_30039305_SNP [dm6]	A	T	1.957e^-4	0.896	NON_SYNONYMOUS_CODING janA UPSTREAM Sry-beta & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14741798	2R_14741798_SNP [dm3] 2R_18854293_SNP [dm6]	A	G	1.959e^-4	0.896	INTRON Jheh1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	843534	2L_843534_SNP [dm3] 2L_843534_SNP [dm6]	C	A	1.986e^-4	0.896	UPSTREAM drongo INTRON drongo
X	11437407	X_11437407_SNP [dm3] X_11543374_SNP [dm6]	G	A	2.000e^-4	0.896	INTRON Drak	TF binding site mE1_TFBS_HSA
3R	10245642	3R_10245642_SNP [dm3] 3R_14419920_SNP [dm6]	T	C	2.003e^-4	0.896	INTRON cv-c & 1 other
2L	9584667	2L_9584667_SNP [dm3] 2L_9584667_SNP [dm6]	T	A	2.018e^-4	0.896	DOWNSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14277676	3R_14277676_SNP [dm3] 3R_18451954_SNP [dm6]	C	T	2.039e^-4	0.896	INTRON fru
2L	3286091	2L_3286091_SNP [dm3] 2L_3286091_SNP [dm6]	A	G	2.039e^-4	0.896	INTERGENIC
3L	9088633	3L_9088633_SNP [dm3] 3L_9095533_SNP [dm6]	A	T	2.048e^-4	0.896	DOWNSTREAM CG32032 INTERGENIC
3L	8649941	3L_8649941_SNP [dm3] 3L_8656841_SNP [dm6]	A	G	2.052e^-4	0.896	INTERGENIC
3L	10218961	3L_10218961_SNP [dm3] 3L_10225861_SNP [dm6]	A	C	2.063e^-4	0.896	UPSTREAM scramb1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18640485	3R_18640485_SNP [dm3] 3R_22814763_SNP [dm6]	C	A	2.089e^-4	0.896	SYNONYMOUS_CODING CG13840
3R	4369002	3R_4369002_SNP [dm3] 3R_8543280_SNP [dm6]	C	A	2.097e^-4	0.896	INTERGENIC
3L	10219698	3L_10219698_SNP [dm3] 3L_10226598_SNP [dm6]	A	G	2.116e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13129319	2L_13129319_SNP [dm3] 2L_13129319_SNP [dm6]	A	T	2.127e^-4	0.896	INTERGENIC
3L	18119927	3L_18119927_SNP [dm3] 3L_18126827_SNP [dm6]	T	C	2.130e^-4	0.896	INTERGENIC
3L	12780215	3L_12780215_SNP [dm3] 3L_12787115_SNP [dm6]	A	T	2.135e^-4	0.896	INTRON Atg1	TF binding site mE1_TFBS_cad
2L	19686941	2L_19686941_SNP [dm3] 2L_19686941_SNP [dm6]	G	A	2.139e^-4	0.896	INTRON Lar
3L	19384189	3L_19384189_SNP [dm3] 3L_19391089_SNP [dm6]	A	G	2.145e^-4	0.896	INTRON CG32206	TF binding site BDTNP1_TFBS_Med mE1_TFBS_inv
3L	964153	3L_964153_SNP [dm3] 3L_964153_SNP [dm6]	T	C	2.166e^-4	0.896	INTRON Glut1
3L	964192	3L_964192_SNP [dm3] 3L_964192_SNP [dm6]	T	C	2.166e^-4	0.896	INTRON Glut1
3L	964204	3L_964204_SNP [dm3] 3L_964204_SNP [dm6]	G	A	2.166e^-4	0.896	INTRON Glut1
3L	13165040	3L_13165040_SNP [dm3] 3L_13171940_SNP [dm6]	C	T	2.175e^-4	0.896	INTERGENIC
2L	6773478	2L_6773478_SNP [dm3] 2L_6773478_SNP [dm6]	T	C	2.181e^-4	0.896	UPSTREAM CG11321 & 1 other INTERGENIC
3R	25024464	3R_25024464_SNP [dm3] 3R_29198742_SNP [dm6]	C	A	2.185e^-4	0.896	INTRON CG14515
3L	8209126	3L_8209126_SNP [dm3] 3L_8216026_SNP [dm6]	C	A	2.192e^-4	0.896	UTR_3_PRIME CG8012 DOWNSTREAM CG8012
3R	16571372	3R_16571372_SNP [dm3] 3R_20745650_SNP [dm6]	C	A	2.200e^-4	0.896	UPSTREAM CG31200 INTRON CG42322
3R	16571502	3R_16571502_SNP [dm3] 3R_20745780_SNP [dm6]	G	C	2.200e^-4	0.896	UPSTREAM CG31200 INTRON CG42322
3R	16571503	3R_16571503_SNP [dm3] 3R_20745781_SNP [dm6]	T	C	2.200e^-4	0.896	UPSTREAM CG31200 INTRON CG42322
3L	10219753	3L_10219753_SNP [dm3] 3L_10226653_SNP [dm6]	T	G	2.202e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14298340	X_14298340_SNP [dm3] X_14404307_SNP [dm6]	C	A	2.208e^-4	0.896	INTRON dpr8
3R	9299382	3R_9299382_INS [dm3] 3R_13473660_INS [dm6]	G	GAGT	2.214e^-4	0.896	INTERGENIC
2L	13321339	2L_13321339_DEL [dm3] 2L_13321339_DEL [dm6]	CTTCC	C	2.228e^-4	0.896	INTRON CG43778
2L	13321374	2L_13321374_SNP [dm3] 2L_13321374_SNP [dm6]	A	G	2.228e^-4	0.896	INTRON CG43778
2R	9905025	2R_9905025_SNP [dm3] 2R_14017520_SNP [dm6]	T	C	2.241e^-4	0.896	INTRON mam
X	15963445	X_15963445_SNP [dm3] X_16069412_SNP [dm6]	A	G	2.248e^-4	0.896	SYNONYMOUS_CODING dpr18 DOWNSTREAM Nipsnap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	10364143	3L_10364143_SNP [dm3] 3L_10371043_SNP [dm6]	T	A	2.252e^-4	0.896	INTERGENIC
3R	9151836	3R_9151836_SNP [dm3] 3R_13326114_SNP [dm6]	A	G	2.262e^-4	0.896	INTERGENIC
3L	10792464	3L_10792464_SNP [dm3] 3L_10799364_SNP [dm6]	G	T	2.272e^-4	0.896	INTERGENIC
3R	24477407	3R_24477407_SNP [dm3] 3R_28651685_SNP [dm6]	G	T	2.279e^-4	0.896	INTERGENIC
3R	15361028	3R_15361028_SNP [dm3] 3R_19535306_SNP [dm6]	C	T	2.283e^-4	0.896	INTRON Dys	TF binding site mE1_TFBS_HSA
2L	10283490	2L_10283490_SNP [dm3] 2L_10283490_SNP [dm6]	C	A	2.285e^-4	0.896	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16241629	3L_16241629_SNP [dm3] 3L_16248529_SNP [dm6]	G	A	2.286e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	2925699	3L_2925699_INS [dm3] 3L_2925699_INS [dm6]	A	AA	2.290e^-4	0.896	INTRON Shab
3L	3702156	3L_3702156_SNP [dm3] 3L_3702156_SNP [dm6]	T	G	2.291e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7061261	3L_7061261_SNP [dm3] 3L_7068161_SNP [dm6]	G	T	2.318e^-4	0.896	NON_SYNONYMOUS_CODING CG14823 UTR_3_PRIME CG14823 DOWNSTREAM CG32391 INTRON CG8641
3L	5257560	3L_5257560_SNP [dm3] 3L_5264460_SNP [dm6]	T	C	2.321e^-4	0.896	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24033355	3R_24033355_SNP [dm3] 3R_28207633_SNP [dm6]	G	A	2.321e^-4	0.896	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21082510	3L_21082510_SNP [dm3] 3L_21089410_SNP [dm6]	T	C	2.351e^-4	0.896	UPSTREAM CG33285 INTRON ko	regulatory region REDfly_CRMs
X	5806121	X_5806121_SNP [dm3] X_5912088_SNP [dm6]	C	T	2.355e^-4	0.896	DOWNSTREAM CG12236 & 1 other INTRON CG12236	TF binding site mE1_TFBS_Trl
2L	6536230	2L_6536230_SNP [dm3] 2L_6536230_SNP [dm6]	T	A	2.356e^-4	0.896	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4806904	2L_4806904_SNP [dm3] 2L_4806904_SNP [dm6]	A	G	2.360e^-4	0.896	INTERGENIC
2L	14371395	2L_14371395_SNP [dm3] 2L_14371395_SNP [dm6]	C	A	2.361e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_sens
2R	2462385	2R_2462385_SNP [dm3] 2R_6574880_SNP [dm6]	G	C	2.369e^-4	0.896	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	18357523	3R_18357523_SNP [dm3] 3R_22531801_SNP [dm6]	G	T	2.376e^-4	0.896	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
X	19783242	X_19783242_SNP [dm3] X_19889209_SNP [dm6]	G	A	2.376e^-4	0.896	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14228494	3L_14228494_SNP [dm3] 3L_14235394_SNP [dm6]	T	C	2.391e^-4	0.896	SYNONYMOUS_CODING CG34244 DOWNSTREAM CG7924	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2617220	3L_2617220_SNP [dm3] 3L_2617220_SNP [dm6]	G	A	2.399e^-4	0.896	INTRON Pxn	TF binding site mE1_TFBS_HSA
2L	20532653	2L_20532653_SNP [dm3] 2L_20532653_SNP [dm6]	G	A	2.414e^-4	0.896	DOWNSTREAM CG44270 INTERGENIC
2R	12408130	2R_12408130_SNP [dm3] 2R_16520625_SNP [dm6]	C	T	2.417e^-4	0.896	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	15815097	2R_15815097_SNP [dm3] 2R_19927592_SNP [dm6]	C	A	2.418e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7835460	3L_7835460_SNP [dm3] 3L_7842360_SNP [dm6]	G	A	2.419e^-4	0.896	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	16704328	3R_16704328_SNP [dm3] 3R_20878606_SNP [dm6]	T	A	2.428e^-4	0.896	DOWNSTREAM TotZ EXON CR44048
2L	15347661	2L_15347661_SNP [dm3] 2L_15347661_SNP [dm6]	G	C	2.438e^-4	0.896	INTERGENIC
3R	8435913	3R_8435913_SNP [dm3] 3R_12610191_SNP [dm6]	T	C	2.447e^-4	0.896	INTERGENIC
3R	13690663	3R_13690663_SNP [dm3] 3R_17864941_SNP [dm6]	A	T	2.453e^-4	0.896	NON_SYNONYMOUS_CODING tinc
2R	6954908	2R_6954908_SNP [dm3] 2R_11067403_SNP [dm6]	T	C	2.457e^-4	0.896	INTRON luna	TF binding site mE1_TFBS_chinmo
2R	7339258	2R_7339258_DEL [dm3] 2R_11451753_DEL [dm6]	AC	A	2.463e^-4	0.896	UPSTREAM E_Pc_ DOWNSTREAM qvr INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	7875428	3L_7875428_SNP [dm3] 3L_7882328_SNP [dm6]	A	G	2.465e^-4	0.896	INTRON CG32365
3R	4369107	3R_4369107_SNP [dm3] 3R_8543385_SNP [dm6]	T	G	2.467e^-4	0.896	INTERGENIC
X	6594232	X_6594232_SNP [dm3] X_6700199_SNP [dm6]	G	A	2.470e^-4	0.896	UTR_5_PRIME CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6594296	X_6594296_SNP [dm3] X_6700263_SNP [dm6]	G	A	2.470e^-4	0.896	UTR_5_PRIME CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10604977	3R_10604977_SNP [dm3] 3R_14779255_SNP [dm6]	C	A	2.471e^-4	0.896	INTRON jvl
X	6804574	X_6804574_DEL [dm3] X_6910541_DEL [dm6]	TT	T	2.480e^-4	0.896	INTRON CG14431
3R	10282004	3R_10282004_SNP [dm3] 3R_14456282_SNP [dm6]	G	A	2.492e^-4	0.896	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20526853	X_20526853_DEL [dm3] X_20655826_DEL [dm6]	ATCA	A	2.504e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12363734	2R_12363734_SNP [dm3] 2R_16476229_SNP [dm6]	C	T	2.523e^-4	0.896	INTERGENIC
3L	10199528	3L_10199528_SNP [dm3] 3L_10206428_SNP [dm6]	T	G	2.527e^-4	0.896	DOWNSTREAM CR44538 INTERGENIC
2L	14511685	2L_14511685_SNP [dm3] 2L_14511685_SNP [dm6]	T	A	2.528e^-4	0.896	EXON CR45693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17431824	2R_17431824_SNP [dm3] 2R_21544319_SNP [dm6]	G	A	2.535e^-4	0.896	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	16929414	2R_16929414_SNP [dm3] 2R_21041909_SNP [dm6]	C	A	2.557e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14864096	X_14864096_DEL [dm3] X_14970063_DEL [dm6]	ACATA	A	2.559e^-4	0.896	INTRON eag
2L	15343759	2L_15343759_SNP [dm3] 2L_15343759_SNP [dm6]	G	A	2.562e^-4	0.896	INTERGENIC
3R	8345263	3R_8345263_SNP [dm3] 3R_12519541_SNP [dm6]	C	A	2.566e^-4	0.896	INTRON Octbeta3R
2L	2350486	2L_2350486_SNP [dm3] 2L_2350486_SNP [dm6]	T	C	2.585e^-4	0.896	INTRON CG9967 & 1 other
2R	10868635	2R_10868635_SNP [dm3] 2R_14981130_SNP [dm6]	T	C	2.592e^-4	0.896	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
2L	7946125	2L_7946125_SNP [dm3] 2L_7946125_SNP [dm6]	T	A	2.601e^-4	0.896	INTRON Snoo
X	20528839	X_20528839_SNP [dm3] X_20657812_SNP [dm6]	A	G	2.632e^-4	0.896	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466	TF binding site BDTNP1_TFBS_dl
3L	14642099	3L_14642099_SNP [dm3] 3L_14648999_SNP [dm6]	T	C	2.644e^-4	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	3154237	X_3154237_SNP [dm3] X_3260204_SNP [dm6]	T	A	2.659e^-4	0.896	INTRON dnc
3L	11798830	3L_11798830_SNP [dm3] 3L_11805730_SNP [dm6]	C	A	2.664e^-4	0.896	NON_SYNONYMOUS_CODING CG42255
2R	11517472	2R_11517472_INS [dm3] 2R_15629967_INS [dm6]	C	CCCC	2.667e^-4	0.896	INTRON CG42524
X	13352016	X_13352016_INS [dm3] X_13457983_INS [dm6]	T	TT	2.674e^-4	0.896	UPSTREAM CG34324 INTRON Neto
X	13352031	X_13352031_SNP [dm3] X_13457998_SNP [dm6]	G	T	2.674e^-4	0.896	UPSTREAM CG34324 INTRON Neto
3R	26838751	3R_26838751_SNP [dm3] 3R_31013029_SNP [dm6]	C	A	2.681e^-4	0.896	INTRON 5-HT7	TF binding site mE1_TFBS_inv
3L	8378399	3L_8378399_SNP [dm3] 3L_8385299_SNP [dm6]	A	C	2.681e^-4	0.896	INTRON ImpE1
3R	9867295	3R_9867295_SNP [dm3] 3R_14041573_SNP [dm6]	T	C	2.698e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18031241	X_18031241_SNP [dm3] X_18137208_SNP [dm6]	G	A	2.710e^-4	0.896	UPSTREAM ari-1 INTRON ari-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	24929621	3R_24929621_SNP [dm3] 3R_29103899_SNP [dm6]	A	G	2.717e^-4	0.896	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2648494	2L_2648494_SNP [dm3] 2L_2648494_SNP [dm6]	T	C	2.725e^-4	0.896	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 UPSTREAM CG9962 DOWNSTREAM CG43851
3R	16568503	3R_16568503_SNP [dm3] 3R_20742781_SNP [dm6]	G	A	2.774e^-4	0.896	DOWNSTREAM CG31199 INTRON CG42322	TF binding site mE1_TFBS_cad
X	6804654	X_6804654_SNP [dm3] X_6910621_SNP [dm6]	C	T	2.780e^-4	0.896	INTRON CG14431
3L	10512682	3L_10512682_SNP [dm3] 3L_10519582_SNP [dm6]	T	C	2.802e^-4	0.896	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4316687	2L_4316687_SNP [dm3] 2L_4316687_SNP [dm6]	A	G	2.803e^-4	0.896	DOWNSTREAM tutl INTRON tutl
2L	10688529	2L_10688529_SNP [dm3] 2L_10688529_SNP [dm6]	C	T	2.808e^-4	0.896	DOWNSTREAM CG7294 INTERGENIC
3R	18990297	3R_18990297_SNP [dm3] 3R_23164575_SNP [dm6]	G	C	2.809e^-4	0.896	INTERGENIC
2L	11191010	2L_11191010_SNP [dm3] 2L_11191010_SNP [dm6]	G	C	2.809e^-4	0.896	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1236696	2L_1236696_SNP [dm3] 2L_1236696_SNP [dm6]	C	G	2.809e^-4	0.896	INTERGENIC
2L	15431797	2L_15431797_SNP [dm3] 2L_15431797_SNP [dm6]	C	T	2.809e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7742647	2L_7742647_SNP [dm3] 2L_7742647_SNP [dm6]	A	G	2.809e^-4	0.896	INTERGENIC
2L	7742855	2L_7742855_SNP [dm3] 2L_7742855_SNP [dm6]	T	C	2.809e^-4	0.896	DOWNSTREAM CG7214 INTERGENIC
2R	13597454	2R_13597454_SNP [dm3] 2R_17709949_SNP [dm6]	A	T	2.809e^-4	0.896	UPSTREAM CG6424 INTRON CG6424
2R	17035200	2R_17035200_SNP [dm3] 2R_21147695_SNP [dm6]	C	T	2.809e^-4	0.896	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
2R	18394879	2R_18394879_SNP [dm3] 2R_22507374_SNP [dm6]	C	T	2.809e^-4	0.896	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4083072	3L_4083072_SNP [dm3] 3L_4083072_SNP [dm6]	A	C	2.809e^-4	0.896	INTRON Gad1
3R	16891835	3R_16891835_SNP [dm3] 3R_21066113_SNP [dm6]	C	T	2.809e^-4	0.896	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	4127208	3R_4127208_SNP [dm3] 3R_8301486_SNP [dm6]	A	G	2.809e^-4	0.896	UTR_5_PRIME mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4127242	3R_4127242_SNP [dm3] 3R_8301520_SNP [dm6]	C	A	2.809e^-4	0.896	SYNONYMOUS_CODING mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4156237	3R_4156237_SNP [dm3] 3R_8330515_SNP [dm6]	A	C	2.809e^-4	0.896	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14302776	X_14302776_SNP [dm3] X_14408743_SNP [dm6]	C	T	2.809e^-4	0.896	INTRON dpr8
2L	7911802	2L_7911802_SNP [dm3] 2L_7911802_SNP [dm6]	A	C	2.815e^-4	0.896	INTRON Snoo
2L	13321440	2L_13321440_SNP [dm3] 2L_13321440_SNP [dm6]	G	A	2.819e^-4	0.896	INTRON CG43778
2R	12970435	2R_12970435_INS [dm3] 2R_17082930_INS [dm6]	C	CC	2.821e^-4	0.896	INTRON CG30460
2L	3453053	2L_3453053_SNP [dm3] 2L_3453053_SNP [dm6]	A	C	2.824e^-4	0.896	SYNONYMOUS_CODING CG12795 DOWNSTREAM Snx1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5618872	2L_5618872_SNP [dm3] 2L_5618872_SNP [dm6]	G	A	2.849e^-4	0.896	UPSTREAM CG14010 DOWNSTREAM CR44796 INTERGENIC
2L	14357481	2L_14357481_SNP [dm3] 2L_14357481_SNP [dm6]	G	A	2.853e^-4	0.896	UPSTREAM CR44851 INTRON Rab14
3R	8134755	3R_8134755_SNP [dm3] 3R_12309033_SNP [dm6]	G	A	2.863e^-4	0.896	INTERGENIC
X	14563595	X_14563595_SNP [dm3] X_14669562_SNP [dm6]	C	A	2.864e^-4	0.896	INTERGENIC
2L	10753216	2L_10753216_SNP [dm3] 2L_10753216_SNP [dm6]	A	C	2.868e^-4	0.896	INTRON CG17124
3L	9088625	3L_9088625_SNP [dm3] 3L_9095525_SNP [dm6]	C	T	2.868e^-4	0.896	DOWNSTREAM CG32032 INTERGENIC
2R	12407045	2R_12407045_SNP [dm3] 2R_16519540_SNP [dm6]	C	A	2.884e^-4	0.896	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	13710194	3L_13710194_SNP [dm3] 3L_13717094_SNP [dm6]	A	G	2.886e^-4	0.896	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3713966	2L_3713966_SNP [dm3] 2L_3713966_SNP [dm6]	A	G	2.893e^-4	0.896	UPSTREAM CG31955 & 1 other INTRON CG2818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20260518	2L_20260518_SNP [dm3] 2L_20260518_SNP [dm6]	C	A	2.896e^-4	0.896	INTERGENIC
3L	14642829	3L_14642829_DEL [dm3] 3L_14649729_DEL [dm6]	GA	G	2.904e^-4	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	1444996	3L_1444996_INS [dm3] 3L_1444996_INS [dm6]	G	GGG	2.925e^-4	0.896	INTRON Ptp61F	TF binding site mE1_TFBS_sens
2L	14368205	2L_14368205_SNP [dm3] 2L_14368205_SNP [dm6]	C	T	2.938e^-4	0.896	INTERGENIC
3L	8246620	3L_8246620_SNP [dm3] 3L_8253520_SNP [dm6]	A	T	2.940e^-4	0.896	INTRON Dscam4
3L	11798899	3L_11798899_SNP [dm3] 3L_11805799_SNP [dm6]	G	A	2.950e^-4	0.896	INTRON CG42255
3L	12834135	3L_12834135_SNP [dm3] 3L_12841035_SNP [dm6]	G	T	2.990e^-4	0.896	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	12895282	X_12895282_SNP [dm3] X_13001249_SNP [dm6]	A	G	2.993e^-4	0.896	INTRON rad
2R	9644119	2R_9644119_SNP [dm3] 2R_13756614_SNP [dm6]	T	A	3.000e^-4	0.896	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24213585	3R_24213585_DEL [dm3] 3R_28387863_DEL [dm6]	GG	G	3.017e^-4	0.896	INTERGENIC
3R	26527703	3R_26527703_SNP [dm3] 3R_30701981_SNP [dm6]	T	A	3.023e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_inv
X	9386074	X_9386074_SNP [dm3] X_9492041_SNP [dm6]	C	T	3.028e^-4	0.896	INTRON mgl
3L	9196166	3L_9196166_SNP [dm3] 3L_9203066_SNP [dm6]	A	G	3.028e^-4	0.896	UTR_3_PRIME Slc45-1
3R	24033517	3R_24033517_SNP [dm3] 3R_28207795_SNP [dm6]	T	A	3.032e^-4	0.896	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13993135	2R_13993135_SNP [dm3] 2R_18105630_SNP [dm6]	T	C	3.032e^-4	0.896	INTRON CG5756
2R	18607949	2R_18607949_SNP [dm3] 2R_22720444_SNP [dm6]	A	G	3.047e^-4	0.896	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2659050	3L_2659050_SNP [dm3] 3L_2659050_SNP [dm6]	T	C	3.054e^-4	0.896	SYNONYMOUS_CODING Fife UTR_3_PRIME Fife UPSTREAM CG33233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	12545658	2R_12545658_SNP [dm3] 2R_16658153_SNP [dm6]	A	G	3.058e^-4	0.896	INTRON Picot
2L	14028978	2L_14028978_SNP [dm3] 2L_14028978_SNP [dm6]	C	T	3.062e^-4	0.896	SYNONYMOUS_CODING CG4500 DOWNSTREAM CG18095
2R	12545609	2R_12545609_INS [dm3] 2R_16658104_INS [dm6]	A	AA	3.065e^-4	0.896	INTRON Picot
2L	4427843	2L_4427843_SNP [dm3] 2L_4427843_SNP [dm6]	G	A	3.067e^-4	0.896	INTRON CG15431
2L	21942650	2L_21942650_SNP [dm3] 2L_21942650_SNP [dm6]	G	A	3.073e^-4	0.896	INTERGENIC
3L	13143477	3L_13143477_SNP [dm3] 3L_13150377_SNP [dm6]	A	G	3.079e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16115203	2R_16115203_SNP [dm3] 2R_20227698_SNP [dm6]	T	A	3.089e^-4	0.896	INTERGENIC
3L	20570915	3L_20570915_SNP [dm3] 3L_20577815_SNP [dm6]	G	C	3.114e^-4	0.896	INTERGENIC
3L	2664117	3L_2664117_SNP [dm3] 3L_2664117_SNP [dm6]	G	A	3.116e^-4	0.896	DOWNSTREAM CG33234 INTRON Fife
3R	10604871	3R_10604871_SNP [dm3] 3R_14779149_SNP [dm6]	G	T	3.146e^-4	0.896	INTRON jvl
3R	7825409	3R_7825409_DEL [dm3] 3R_11999687_DEL [dm6]	CC	C	3.179e^-4	0.896	INTRON Tk & 1 other
3L	9088629	3L_9088629_SNP [dm3] 3L_9095529_SNP [dm6]	C	G	3.181e^-4	0.896	DOWNSTREAM CG32032 INTERGENIC
2R	13503985	2R_13503985_SNP [dm3] 2R_17616480_SNP [dm6]	A	G	3.185e^-4	0.896	UPSTREAM snoRNA:Or-aca4 DOWNSTREAM CG44403 INTRON CG10936	TF binding site BDTNP1_TFBS_dl
3L	2622023	3L_2622023_INS [dm3] 3L_2622023_INS [dm6]	A	AGGTCTCA	3.202e^-4	0.896	INTRON Pxn
X	14400695	X_14400695_SNP [dm3] X_14506662_SNP [dm6]	G	C	3.205e^-4	0.896	INTERGENIC
3L	5376612	3L_5376612_DEL [dm3] 3L_5383512_DEL [dm6]	CTGT	A	3.211e^-4	0.896	UPSTREAM Ir64a INTERGENIC
3R	26784086	3R_26784086_SNP [dm3] 3R_30958364_SNP [dm6]	A	G	3.223e^-4	0.896	INTERGENIC
X	2312229	X_2312229_SNP [dm3] X_2418196_SNP [dm6]	A	G	3.226e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_sens
3R	9299417	3R_9299417_SNP [dm3] 3R_13473695_SNP [dm6]	T	G	3.232e^-4	0.896	INTERGENIC
3L	13541885	3L_13541885_SNP [dm3] 3L_13548785_SNP [dm6]	A	G	3.236e^-4	0.896	INTRON bru-3
2R	20321777	2R_20321777_SNP [dm3] 2R_24434254_SNP [dm6]	G	T	3.236e^-4	0.896	INTERGENIC
3L	12780219	3L_12780219_SNP [dm3] 3L_12787119_SNP [dm6]	A	T	3.237e^-4	0.896	INTRON Atg1	TF binding site mE1_TFBS_cad
3R	9151848	3R_9151848_SNP [dm3] 3R_13326126_SNP [dm6]	A	G	3.242e^-4	0.896	INTERGENIC
2L	19362106	2L_19362106_SNP [dm3] 2L_19362106_SNP [dm6]	A	T	3.249e^-4	0.896	INTRON dnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15978281	2L_15978281_SNP [dm3] 2L_15978281_SNP [dm6]	T	A	3.253e^-4	0.896	INTERGENIC
3L	9197497	3L_9197497_SNP [dm3] 3L_9204397_SNP [dm6]	A	G	3.268e^-4	0.896	SYNONYMOUS_CODING Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	5682402	2L_5682402_SNP [dm3] 2L_5682402_SNP [dm6]	A	T	3.274e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15324379	2L_15324379_SNP [dm3] 2L_15324379_SNP [dm6]	A	C	3.281e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	15324387	2L_15324387_SNP [dm3] 2L_15324387_SNP [dm6]	G	A	3.281e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	2574247	3L_2574247_SNP [dm3] 3L_2574247_SNP [dm6]	T	C	3.308e^-4	0.896	INTRON msn
X	20877205	X_20877205_SNP [dm3] X_21006178_SNP [dm6]	G	T	3.314e^-4	0.896	INTERGENIC	transposable element FlyBase
X	21232964	X_21232964_SNP [dm3] X_21361937_SNP [dm6]	G	A	3.341e^-4	0.896	DOWNSTREAM Sep1 INTERGENIC
2R	18180962	2R_18180962_SNP [dm3] 2R_22293457_SNP [dm6]	T	G	3.366e^-4	0.896	UTR_5_PRIME CG5819 INTRON CG5819
3L	2622009	3L_2622009_SNP [dm3] 3L_2622009_SNP [dm6]	A	T	3.368e^-4	0.896	INTRON Pxn
2L	10190807	2L_10190807_SNP [dm3] 2L_10190807_SNP [dm6]	G	T	3.369e^-4	0.896	SYNONYMOUS_CODING CG31874 INTRON Sur	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20241397	2L_20241397_SNP [dm3] 2L_20241397_SNP [dm6]	T	A	3.392e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6507026	2L_6507026_SNP [dm3] 2L_6507026_SNP [dm6]	C	T	3.393e^-4	0.896	DOWNSTREAM CR44775 INTRON CG31637
3L	18617504	3L_18617504_SNP [dm3] 3L_18624404_SNP [dm6]	G	T	3.405e^-4	0.896	SYNONYMOUS_CODING bora
2L	14068721	2L_14068721_SNP [dm3] 2L_14068721_SNP [dm6]	T	C	3.421e^-4	0.896	INTRON nAChRalpha5
2R	20321776	2R_20321776_SNP [dm3] 2R_24434253_SNP [dm6]	A	G	3.422e^-4	0.896	INTERGENIC
2R	20200009	2R_20200009_SNP [dm3] 2R_24312486_SNP [dm6]	T	A	3.438e^-4	0.896	UTR_3_PRIME betaTub60D	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20200155	2R_20200155_SNP [dm3] 2R_24312632_SNP [dm6]	C	T	3.438e^-4	0.896	UTR_3_PRIME betaTub60D	TF binding site mE1_TFBS_HSA
2R	20200176	2R_20200176_SNP [dm3] 2R_24312653_SNP [dm6]	C	T	3.438e^-4	0.896	UTR_3_PRIME betaTub60D
3R	16571318	3R_16571318_SNP [dm3] 3R_20745596_SNP [dm6]	A	G	3.467e^-4	0.896	UPSTREAM CG31200 INTRON CG42322
X	14133567	X_14133567_SNP [dm3] X_14239534_SNP [dm6]	T	A	3.468e^-4	0.896	NON_SYNONYMOUS_CODING CG1434 DOWNSTREAM mRNA-cap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2615750	3L_2615750_SNP [dm3] 3L_2615750_SNP [dm6]	G	A	3.476e^-4	0.896	INTRON Pxn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4521032	2L_4521032_SNP [dm3] 2L_4521032_SNP [dm6]	A	G	3.479e^-4	0.896	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9552484	3L_9552484_SNP [dm3] 3L_9559384_SNP [dm6]	A	G	3.484e^-4	0.896	INTRON CG42673
2R	20321748	2R_20321748_SNP [dm3] 2R_24434225_SNP [dm6]	C	T	3.503e^-4	0.896	INTERGENIC
2L	20295611	2L_20295611_SNP [dm3] 2L_20295611_SNP [dm6]	T	C	3.505e^-4	0.896	UTR_3_PRIME CG12617 DOWNSTREAM CG12617
3R	5390470	3R_5390470_SNP [dm3] 3R_9564748_SNP [dm6]	C	T	3.514e^-4	0.896	SYNONYMOUS_CODING Vps45	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1428015	2L_1428015_SNP [dm3] 2L_1428015_SNP [dm6]	T	A	3.533e^-4	0.896	UPSTREAM CG43401 INTERGENIC	TF binding site mE1_TFBS_cad
2L	15120602	2L_15120602_SNP [dm3] 2L_15120602_SNP [dm6]	G	T	3.578e^-4	0.896	EXON CR43853
2L	14368207	2L_14368207_SNP [dm3] 2L_14368207_SNP [dm6]	C	T	3.606e^-4	0.896	INTERGENIC
X	14260187	X_14260187_SNP [dm3] X_14366154_SNP [dm6]	A	G	3.609e^-4	0.896	INTRON dpr8
2L	492331	2L_492331_SNP [dm3] 2L_492331_SNP [dm6]	A	T	3.609e^-4	0.896	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	493550	2L_493550_SNP [dm3] 2L_493550_SNP [dm6]	G	A	3.609e^-4	0.896	INTRON ush
2L	5954899	2L_5954899_SNP [dm3] 2L_5954899_SNP [dm6]	G	A	3.609e^-4	0.896	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
X	17304679	X_17304679_DEL [dm3] X_17410646_DEL [dm6]	CC	C	3.609e^-4	0.896	INTERGENIC
2L	4427987	2L_4427987_SNP [dm3] 2L_4427987_SNP [dm6]	A	G	3.615e^-4	0.896	INTRON CG15431
2L	4428074	2L_4428074_SNP [dm3] 2L_4428074_SNP [dm6]	A	C	3.615e^-4	0.896	INTRON CG15431
3L	8649880	3L_8649880_SNP [dm3] 3L_8656780_SNP [dm6]	T	A	3.629e^-4	0.896	INTERGENIC
2R	2451649	2R_2451649_SNP [dm3] 2R_6564144_SNP [dm6]	T	C	3.643e^-4	0.896	INTRON jing
3L	11026938	3L_11026938_SNP [dm3] 3L_11033838_SNP [dm6]	T	C	3.665e^-4	0.896	UPSTREAM CR44547 INTERGENIC	TF binding site mE1_TFBS_cad
3L	8210098	3L_8210098_SNP [dm3] 3L_8216998_SNP [dm6]	G	A	3.668e^-4	0.896	DOWNSTREAM CG8012 INTERGENIC
3R	12926587	3R_12926587_SNP [dm3] 3R_17100865_SNP [dm6]	T	C	3.672e^-4	0.896	INTRON cher
3R	12926613	3R_12926613_SNP [dm3] 3R_17100891_SNP [dm6]	G	T	3.672e^-4	0.896	INTRON cher
2R	12333487	2R_12333487_SNP [dm3] 2R_16445982_SNP [dm6]	T	A	3.685e^-4	0.896	UPSTREAM CG15925 INTERGENIC
2R	19897034	2R_19897034_SNP [dm3] 2R_24009511_SNP [dm6]	C	T	3.685e^-4	0.896	NON_SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo
X	15665108	X_15665108_SNP [dm3] X_15771075_SNP [dm6]	T	C	3.686e^-4	0.896	SYNONYMOUS_CODING CG33172	TF binding site mE1_TFBS_sens
3L	3034732	3L_3034732_SNP [dm3] 3L_3034732_SNP [dm6]	C	T	3.688e^-4	0.896	UPSTREAM CG2162 INTERGENIC
X	6804727	X_6804727_DEL [dm3] X_6910694_DEL [dm6]	ATTATT	A	3.703e^-4	0.896	INTRON CG14431
3R	8435875	3R_8435875_SNP [dm3] 3R_12610153_SNP [dm6]	C	T	3.709e^-4	0.896	INTERGENIC
2L	20468546	2L_20468546_INS [dm3] 2L_20468546_INS [dm6]	T	TTA	3.711e^-4	0.896	INTRON CR44980
2L	4428392	2L_4428392_SNP [dm3] 2L_4428392_SNP [dm6]	G	T	3.717e^-4	0.896	INTRON CG15431
2L	7742428	2L_7742428_SNP [dm3] 2L_7742428_SNP [dm6]	A	T	3.717e^-4	0.896	UPSTREAM Acp1 INTERGENIC
2L	8309062	2L_8309062_SNP [dm3] 2L_8309062_SNP [dm6]	A	T	3.726e^-4	0.896	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8309068	2L_8309068_SNP [dm3] 2L_8309068_SNP [dm6]	C	T	3.726e^-4	0.896	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	16704456	3R_16704456_SNP [dm3] 3R_20878734_SNP [dm6]	T	C	3.733e^-4	0.896	DOWNSTREAM TotZ EXON CR44048
X	14301449	X_14301449_SNP [dm3] X_14407416_SNP [dm6]	T	C	3.739e^-4	0.896	INTRON dpr8
2L	10247834	2L_10247834_SNP [dm3] 2L_10247834_SNP [dm6]	T	A	3.754e^-4	0.896	UPSTREAM chico INTRON bsk
2L	14024315	2L_14024315_SNP [dm3] 2L_14024315_SNP [dm6]	A	T	3.778e^-4	0.896	UPSTREAM CR31840 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12634276	2R_12634276_SNP [dm3] 2R_16746771_SNP [dm6]	T	A	3.778e^-4	0.896	UPSTREAM CG15617 INTERGENIC
X	13625504	X_13625504_INS [dm3] X_13731471_INS [dm6]	T	TAAGTT	3.778e^-4	0.896	INTRON g	TF binding site BDTNP1_TFBS_dl
2R	13517905	2R_13517905_SNP [dm3] 2R_17630400_SNP [dm6]	A	T	3.779e^-4	0.896	INTRON CG10936 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7743361	2L_7743361_SNP [dm3] 2L_7743361_SNP [dm6]	C	T	3.783e^-4	0.896	DOWNSTREAM CG7214 INTERGENIC
3R	13418027	3R_13418027_SNP [dm3] 3R_17592305_SNP [dm6]	C	T	3.783e^-4	0.896	INTERGENIC
2R	18484180	2R_18484180_SNP [dm3] 2R_22596675_SNP [dm6]	T	A	3.783e^-4	0.896	UPSTREAM CG4269 DOWNSTREAM CG3927 EXON CR45328
3R	12442635	3R_12442635_SNP [dm3] 3R_16616913_SNP [dm6]	G	C	3.783e^-4	0.896	NON_SYNONYMOUS_CODING CG17562
3L	16891960	3L_16891960_SNP [dm3] 3L_16898860_SNP [dm6]	T	C	3.792e^-4	0.896	UPSTREAM Lmpt INTRON Lmpt
3L	2663896	3L_2663896_SNP [dm3] 3L_2663896_SNP [dm6]	T	C	3.795e^-4	0.896	DOWNSTREAM CG33234 INTRON Fife
2R	10893903	2R_10893903_SNP [dm3] 2R_15006398_SNP [dm6]	A	G	3.803e^-4	0.896	INTERGENIC
3R	25852607	3R_25852607_SNP [dm3] 3R_30026885_SNP [dm6]	G	C	3.805e^-4	0.896	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_HSA
3R	25852608	3R_25852608_SNP [dm3] 3R_30026886_SNP [dm6]	T	C	3.805e^-4	0.896	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_HSA
2R	10893988	2R_10893988_SNP [dm3] 2R_15006483_SNP [dm6]	T	C	3.855e^-4	0.896	INTERGENIC
X	17841186	X_17841186_SNP [dm3] X_17947153_SNP [dm6]	G	C	3.857e^-4	0.896	UTR_3_PRIME Sh INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3727699	3L_3727699_SNP [dm3] 3L_3727699_SNP [dm6]	C	T	3.882e^-4	0.896	INTRON CG32264
2L	492383	2L_492383_SNP [dm3] 2L_492383_SNP [dm6]	C	T	3.889e^-4	0.896	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	4099042	3L_4099042_DEL [dm3] 3L_4099042_DEL [dm6]	GC	A	3.891e^-4	0.896	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12543496	2R_12543496_SNP [dm3] 2R_16655991_SNP [dm6]	T	C	3.893e^-4	0.896	UPSTREAM Nach INTRON Picot	TF binding site mE1_TFBS_cad
2L	4253284	2L_4253284_SNP [dm3] 2L_4253284_SNP [dm6]	T	A	3.895e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3810662	X_3810662_SNP [dm3] X_3916629_SNP [dm6]	G	A	3.906e^-4	0.896	INTRON CG42541	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5956799	3L_5956799_SNP [dm3] 3L_5963699_SNP [dm6]	G	T	3.918e^-4	0.896	INTERGENIC
3L	2989970	3L_2989970_SNP [dm3] 3L_2989970_SNP [dm6]	C	T	3.929e^-4	0.896	INTERGENIC
3R	7303305	3R_7303305_SNP [dm3] 3R_11477583_SNP [dm6]	T	G	3.954e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11798851	3L_11798851_SNP [dm3] 3L_11805751_SNP [dm6]	A	G	3.961e^-4	0.896	SPLICE_SITE_REGION CG42255 INTRON CG42255
3L	11798867	3L_11798867_SNP [dm3] 3L_11805767_SNP [dm6]	G	A	3.961e^-4	0.896	INTRON CG42255
2L	14368119	2L_14368119_SNP [dm3] 2L_14368119_SNP [dm6]	C	T	3.966e^-4	0.896	INTERGENIC
X	20534992	X_20534992_SNP [dm3] X_20663965_SNP [dm6]	G	T	3.973e^-4	0.896	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	13460278	X_13460278_SNP [dm3] X_13566245_SNP [dm6]	A	G	3.981e^-4	0.896	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
3L	9020213	3L_9020213_SNP [dm3] 3L_9027113_SNP [dm6]	C	T	3.988e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9490728	3L_9490728_SNP [dm3] 3L_9497628_SNP [dm6]	C	T	3.992e^-4	0.896	UPSTREAM path INTRON path
2L	14911072	2L_14911072_SNP [dm3] 2L_14911072_SNP [dm6]	G	A	3.995e^-4	0.896	INTRON CG42313
3R	5303127	3R_5303127_INS [dm3] 3R_9477405_INS [dm6]	A	AA	3.995e^-4	0.896	INTRON CG16779
3L	8197120	3L_8197120_SNP [dm3] 3L_8204020_SNP [dm6]	T	C	4.010e^-4	0.896	DOWNSTREAM CG13679 INTERGENIC
3L	13845358	3L_13845358_SNP [dm3] 3L_13852258_SNP [dm6]	T	C	4.014e^-4	0.896	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11471413	2R_11471413_SNP [dm3] 2R_15583908_SNP [dm6]	A	T	4.020e^-4	0.896	INTERGENIC
2R	12456810	2R_12456810_SNP [dm3] 2R_16569305_SNP [dm6]	A	G	4.021e^-4	0.896	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10182916	3R_10182916_SNP [dm3] 3R_14357194_SNP [dm6]	C	T	4.033e^-4	0.896	INTRON NK7.1
X	14260204	X_14260204_SNP [dm3] X_14366171_SNP [dm6]	A	G	4.045e^-4	0.896	INTRON dpr8
2L	10030079	2L_10030079_SNP [dm3] 2L_10030079_SNP [dm6]	T	C	4.052e^-4	0.896	DOWNSTREAM CG13127 INTERGENIC
3L	5361554	3L_5361554_SNP [dm3] 3L_5368454_SNP [dm6]	A	T	4.054e^-4	0.896	UPSTREAM CG10635 & 1 other INTERGENIC
3R	16307095	3R_16307095_SNP [dm3] 3R_20481373_SNP [dm6]	C	A	4.057e^-4	0.896	UTR_5_PRIME Gfrl INTRON Gfrl
2R	7677168	2R_7677168_SNP [dm3] 2R_11789663_SNP [dm6]	T	A	4.070e^-4	0.896	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1098323	2L_1098323_SNP [dm3] 2L_1098323_SNP [dm6]	T	C	4.076e^-4	0.896	INTRON CG4629
3L	9197494	3L_9197494_SNP [dm3] 3L_9204394_SNP [dm6]	G	A	4.076e^-4	0.896	SYNONYMOUS_CODING Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	1634710	2R_1634710_SNP [dm3] 2R_5747205_SNP [dm6]	G	A	4.082e^-4	0.896	INTERGENIC	transposable element FlyBase
X	20316145	X_20316145_SNP [dm3] X_20445118_SNP [dm6]	G	T	4.085e^-4	0.896	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14982051	2R_14982051_SNP [dm3] 2R_19094546_SNP [dm6]	C	A	4.085e^-4	0.896	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
X	1276898	X_1276898_SNP [dm3] X_1382865_SNP [dm6]	A	G	4.088e^-4	0.896	INTRON CG32813	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	19304630	2R_19304630_SNP [dm3] 2R_23417107_SNP [dm6]	T	C	4.099e^-4	0.896	UTR_3_PRIME CG30411 INTRON CG9812	TF binding site mE1_TFBS_HSA
3R	9752024	3R_9752024_SNP [dm3] 3R_13926302_SNP [dm6]	C	T	4.099e^-4	0.896	INTERGENIC
2L	19825441	2L_19825441_SNP [dm3] 2L_19825441_SNP [dm6]	C	T	4.115e^-4	0.896	INTRON sick
3R	22144237	3R_22144237_SNP [dm3] 3R_26318515_SNP [dm6]	T	A	4.119e^-4	0.896	UTR_5_PRIME CG33970
3L	16433825	3L_16433825_SNP [dm3] 3L_16440725_SNP [dm6]	A	G	4.126e^-4	0.896	INTRON CG33158 & 1 other
3L	5361413	3L_5361413_SNP [dm3] 3L_5368313_SNP [dm6]	G	A	4.133e^-4	0.896	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
3R	16571460	3R_16571460_SNP [dm3] 3R_20745738_SNP [dm6]	A	G	4.136e^-4	0.896	UPSTREAM CG31200 INTRON CG42322
3R	9196104	3R_9196104_SNP [dm3] 3R_13370382_SNP [dm6]	G	A	4.140e^-4	0.896	SYNONYMOUS_CODING Lip3 DOWNSTREAM CheA87a
2R	15006732	2R_15006732_SNP [dm3] 2R_19119227_SNP [dm6]	A	T	4.159e^-4	0.896	INTRON 5-HT1A	TF binding site mE1_TFBS_inv
3R	15321702	3R_15321702_SNP [dm3] 3R_19495980_SNP [dm6]	G	T	4.172e^-4	0.896	INTRON Dys	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9760120	3R_9760120_SNP [dm3] 3R_13934398_SNP [dm6]	A	C	4.172e^-4	0.896	INTERGENIC
3L	14642057	3L_14642057_SNP [dm3] 3L_14648957_SNP [dm6]	A	T	4.182e^-4	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	19115962	2L_19115962_SNP [dm3] 2L_19115962_SNP [dm6]	G	A	4.190e^-4	0.896	SYNONYMOUS_CODING CG10561 DOWNSTREAM Ddc	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	2632065	2L_2632065_SNP [dm3] 2L_2632065_SNP [dm6]	G	T	4.193e^-4	0.896	INTERGENIC
3R	9578273	3R_9578273_SNP [dm3] 3R_13752551_SNP [dm6]	G	A	4.213e^-4	0.896	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_sens
2R	8978031	2R_8978031_SNP [dm3] 2R_13090526_SNP [dm6]	A	T	4.219e^-4	0.896	INTERGENIC
3R	24911369	3R_24911369_SNP [dm3] 3R_29085647_SNP [dm6]	T	C	4.227e^-4	0.896	INTRON CG11873
3L	16891987	3L_16891987_SNP [dm3] 3L_16898887_SNP [dm6]	T	C	4.231e^-4	0.896	UPSTREAM Lmpt INTRON Lmpt
3L	16891991	3L_16891991_SNP [dm3] 3L_16898891_SNP [dm6]	C	T	4.231e^-4	0.896	UPSTREAM Lmpt INTRON Lmpt
2L	7490980	2L_7490980_SNP [dm3] 2L_7490980_SNP [dm6]	G	C	4.235e^-4	0.896	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15605347	3L_15605347_SNP [dm3] 3L_15612247_SNP [dm6]	C	G	4.242e^-4	0.896	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449 DOWNSTREAM comm3
3R	26974825	3R_26974825_SNP [dm3] 3R_31149103_SNP [dm6]	C	T	4.246e^-4	0.896	INTRON Gycbeta100B
3R	9760102	3R_9760102_SNP [dm3] 3R_13934380_SNP [dm6]	C	G	4.271e^-4	0.896	INTERGENIC
2L	14370466	2L_14370466_INS [dm3] 2L_14370466_INS [dm6]	G	GTGTG	4.284e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	11026934	3L_11026934_SNP [dm3] 3L_11033834_SNP [dm6]	T	C	4.317e^-4	0.896	UPSTREAM CR44547 INTERGENIC	TF binding site mE1_TFBS_cad
2L	12872178	2L_12872178_SNP [dm3] 2L_12872178_SNP [dm6]	G	C	4.325e^-4	0.896	INTERGENIC
3L	13541900	3L_13541900_INS [dm3] 3L_13548800_INS [dm6]	A	ATA	4.326e^-4	0.896	INTRON bru-3
2L	4201837	2L_4201837_SNP [dm3] 2L_4201837_SNP [dm6]	A	G	4.335e^-4	0.896	INTRON ft	TF binding site mE1_TFBS_chinmo
3L	5847591	3L_5847591_SNP [dm3] 3L_5854491_SNP [dm6]	C	T	4.335e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14368024	2L_14368024_SNP [dm3] 2L_14368024_SNP [dm6]	T	A	4.338e^-4	0.896	INTERGENIC
3R	10995056	3R_10995056_SNP [dm3] 3R_15169334_SNP [dm6]	A	T	4.338e^-4	0.896	INTRON Gyc88E
2L	12358098	2L_12358098_SNP [dm3] 2L_12358098_SNP [dm6]	C	T	4.360e^-4	0.896	SYNONYMOUS_CODING bru-2 DOWNSTREAM CG17010
2R	15742067	2R_15742067_SNP [dm3] 2R_19854562_SNP [dm6]	C	A	4.368e^-4	0.896	INTERGENIC
X	14400705	X_14400705_SNP [dm3] X_14506672_SNP [dm6]	T	G	4.376e^-4	0.896	INTERGENIC
X	14400707	X_14400707_SNP [dm3] X_14506674_SNP [dm6]	G	A	4.376e^-4	0.896	INTERGENIC
X	3153802	X_3153802_SNP [dm3] X_3259769_SNP [dm6]	T	G	4.390e^-4	0.896	INTRON dnc
2L	10688458	2L_10688458_INS [dm3] 2L_10688458_INS [dm6]	A	AAAATATAAAT...	4.404e^-4	0.896	DOWNSTREAM CG7294 INTERGENIC
2L	14368064	2L_14368064_SNP [dm3] 2L_14368064_SNP [dm6]	A	T	4.422e^-4	0.896	INTERGENIC
2L	14368094	2L_14368094_SNP [dm3] 2L_14368094_SNP [dm6]	A	T	4.422e^-4	0.896	INTERGENIC
2R	15297860	2R_15297860_SNP [dm3] 2R_19410355_SNP [dm6]	T	A	4.434e^-4	0.896	NON_SYNONYMOUS_CODING hts	TF binding site BDTNP1_TFBS_dl
2L	20295602	2L_20295602_SNP [dm3] 2L_20295602_SNP [dm6]	T	C	4.437e^-4	0.896	UTR_3_PRIME CG12617 DOWNSTREAM CG12617
2R	12572245	2R_12572245_DEL [dm3] 2R_16684740_DEL [dm6]	AGTAGTTTCCAA...	A	4.446e^-4	0.896	UPSTREAM CG30463 INTRON CG30463
2L	12872229	2L_12872229_SNP [dm3] 2L_12872229_SNP [dm6]	C	T	4.450e^-4	0.896	INTERGENIC
X	16082246	X_16082246_SNP [dm3] X_16188213_SNP [dm6]	C	G	4.451e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	11194470	2L_11194470_SNP [dm3] 2L_11194470_SNP [dm6]	C	T	4.463e^-4	0.896	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	24910789	3R_24910789_SNP [dm3] 3R_29085067_SNP [dm6]	G	C	4.472e^-4	0.896	INTRON CG11873
2R	15565541	2R_15565541_DEL [dm3] 2R_19678036_DEL [dm6]	CGAC	C	4.494e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13307888	2L_13307888_SNP [dm3] 2L_13307888_SNP [dm6]	G	C	4.499e^-4	0.896	UTR_3_PRIME CG43778 DOWNSTREAM CG16825 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	12615862	3L_12615862_SNP [dm3] 3L_12622762_SNP [dm6]	C	A	4.505e^-4	0.896	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11798901	3L_11798901_SNP [dm3] 3L_11805801_SNP [dm6]	T	G	4.506e^-4	0.896	INTRON CG42255
3R	8435842	3R_8435842_SNP [dm3] 3R_12610120_SNP [dm6]	A	T	4.513e^-4	0.896	INTERGENIC
2L	5784859	2L_5784859_SNP [dm3] 2L_5784859_SNP [dm6]	C	A	4.559e^-4	0.896	UTR_3_PRIME CG31913 INTRON CG9171
2L	5784862	2L_5784862_SNP [dm3] 2L_5784862_SNP [dm6]	G	A	4.559e^-4	0.896	UTR_3_PRIME CG31913 INTRON CG9171
3R	25865323	3R_25865323_SNP [dm3] 3R_30039601_SNP [dm6]	A	T	4.560e^-4	0.896	UPSTREAM Sry-beta & 2 others INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	19257306	X_19257306_SNP [dm3] X_19363273_SNP [dm6]	G	A	4.560e^-4	0.896	INTRON kek5	TF binding site BDTNP1_TFBS_dl
3R	5141772	3R_5141772_SNP [dm3] 3R_9316050_SNP [dm6]	T	C	4.561e^-4	0.896	INTRON CG8861
2L	14368022	2L_14368022_SNP [dm3] 2L_14368022_SNP [dm6]	G	A	4.574e^-4	0.896	INTERGENIC
2L	14368117	2L_14368117_SNP [dm3] 2L_14368117_SNP [dm6]	A	T	4.574e^-4	0.896	INTERGENIC
3L	1629983	3L_1629983_SNP [dm3] 3L_1629983_SNP [dm6]	T	C	4.576e^-4	0.896	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14365411	2L_14365411_SNP [dm3] 2L_14365411_SNP [dm6]	T	G	4.593e^-4	0.896	UTR_3_PRIME spel1 INTRON spel1
3L	10199543	3L_10199543_SNP [dm3] 3L_10206443_SNP [dm6]	T	A	4.599e^-4	0.896	DOWNSTREAM CR44538 INTERGENIC
2L	1296699	2L_1296699_SNP [dm3] 2L_1296699_SNP [dm6]	T	G	4.620e^-4	0.896	DOWNSTREAM robo3 INTERGENIC
3L	10862630	3L_10862630_SNP [dm3] 3L_10869530_SNP [dm6]	A	T	4.623e^-4	0.896	UPSTREAM tna INTRON tna
3R	17559641	3R_17559641_SNP [dm3] 3R_21733919_SNP [dm6]	C	T	4.626e^-4	0.896	INTERGENIC
3R	17559683	3R_17559683_SNP [dm3] 3R_21733961_SNP [dm6]	A	T	4.626e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7677152	2R_7677152_SNP [dm3] 2R_11789647_SNP [dm6]	T	A	4.630e^-4	0.896	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7462537	3L_7462537_SNP [dm3] 3L_7469437_SNP [dm6]	T	A	4.632e^-4	0.896	DOWNSTREAM CG8543 & 3 others INTERGENIC
2L	9585319	2L_9585319_DEL [dm3] 2L_9585319_DEL [dm6]	AA	A	4.634e^-4	0.896	INTRON CR43621	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	19829357	2L_19829357_SNP [dm3] 2L_19829357_SNP [dm6]	C	T	4.647e^-4	0.896	INTRON sick
2L	15978311	2L_15978311_SNP [dm3] 2L_15978311_SNP [dm6]	G	A	4.653e^-4	0.896	INTERGENIC
3L	4739624	3L_4739624_SNP [dm3] 3L_4739624_SNP [dm6]	G	C	4.655e^-4	0.896	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
3L	9686786	3L_9686786_SNP [dm3] 3L_9693686_SNP [dm6]	C	T	4.656e^-4	0.896	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	13697951	X_13697951_SNP [dm3] X_13803918_SNP [dm6]	C	T	4.657e^-4	0.896	SYNONYMOUS_CODING inaE	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7631756	2L_7631756_SNP [dm3] 2L_7631756_SNP [dm6]	G	T	4.668e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	16433813	3L_16433813_SNP [dm3] 3L_16440713_SNP [dm6]	G	A	4.679e^-4	0.896	INTRON CG33158 & 1 other
2L	6891801	2L_6891801_INS [dm3] 2L_6891801_INS [dm6]	A	AACAGAA	4.681e^-4	0.896	INTRON Nlg2
3L	11791981	3L_11791981_SNP [dm3] 3L_11798881_SNP [dm6]	C	G	4.692e^-4	0.896	DOWNSTREAM CG10361 & 1 other INTERGENIC
2L	15091513	2L_15091513_SNP [dm3] 2L_15091513_SNP [dm6]	A	C	4.733e^-4	0.896	NON_SYNONYMOUS_CODING CG15270
3L	956975	3L_956975_SNP [dm3] 3L_956975_SNP [dm6]	G	C	4.738e^-4	0.896	INTRON Glut1
2R	6295768	2R_6295768_SNP [dm3] 2R_10408263_SNP [dm6]	T	C	4.743e^-4	0.896	UPSTREAM CG12898 DOWNSTREAM CG43177 & 1 other INTRON CG42732
3R	9192834	3R_9192834_SNP [dm3] 3R_13367112_SNP [dm6]	C	T	4.746e^-4	0.896	UPSTREAM Dic1 & 1 other INTRON Dic1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15575028	3L_15575028_SNP [dm3] 3L_15581928_SNP [dm6]	T	A	4.775e^-4	0.896	NON_SYNONYMOUS_CODING CG12301	TF binding site mE1_TFBS_sens
3L	2471326	3L_2471326_SNP [dm3] 3L_2471326_SNP [dm6]	C	T	4.777e^-4	0.896	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	18446683	X_18446683_SNP [dm3] X_18552650_SNP [dm6]	T	G	4.784e^-4	0.896	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2022598	3R_2022598_SNP [dm3] 3R_6196876_SNP [dm6]	A	T	4.786e^-4	0.896	INTERGENIC
3L	15477498	3L_15477498_SNP [dm3] 3L_15484398_SNP [dm6]	A	G	4.790e^-4	0.896	UTR_3_PRIME Ran-like
3L	15477529	3L_15477529_SNP [dm3] 3L_15484429_SNP [dm6]	T	C	4.790e^-4	0.896	UTR_3_PRIME Ran-like
2R	13185101	2R_13185101_SNP [dm3] 2R_17297596_SNP [dm6]	T	C	4.848e^-4	0.896	INTRON mbl
2L	12516165	2L_12516165_SNP [dm3] 2L_12516165_SNP [dm6]	A	T	4.854e^-4	0.896	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	10412560	2R_10412560_SNP [dm3] 2R_14525055_SNP [dm6]	G	C	4.864e^-4	0.896	INTERGENIC
2L	15101700	2L_15101700_SNP [dm3] 2L_15101700_SNP [dm6]	G	C	4.865e^-4	0.896	INTERGENIC
2L	14518599	2L_14518599_SNP [dm3] 2L_14518599_SNP [dm6]	C	T	4.885e^-4	0.896	UPSTREAM tRNA:G3:35Bb DOWNSTREAM tRNA:G3:35Bc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	13314103	3L_13314103_SNP [dm3] 3L_13321003_SNP [dm6]	A	G	4.885e^-4	0.896	INTERGENIC
3R	4376881	3R_4376881_SNP [dm3] 3R_8551159_SNP [dm6]	A	G	4.892e^-4	0.896	INTERGENIC
2R	6656084	2R_6656084_SNP [dm3] 2R_10768579_SNP [dm6]	C	T	4.908e^-4	0.896	INTRON CG33144
3L	10700395	3L_10700395_SNP [dm3] 3L_10707295_SNP [dm6]	A	G	4.976e^-4	0.896	INTERGENIC
X	228346	X_228346_INS [dm3] X_334313_INS [dm6]	A	ATACTGCA	5.001e^-4	0.896	INTRON CG3777 & 1 other
X	2699719	X_2699719_SNP [dm3] X_2805686_SNP [dm6]	C	G	5.001e^-4	0.896	INTRON kirre
X	20582254	X_20582254_DEL [dm3] X_20711227_DEL [dm6]	ACTTAA	A	5.010e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
2L	14359817	2L_14359817_SNP [dm3] 2L_14359817_SNP [dm6]	T	C	5.014e^-4	0.896	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13971252	X_13971252_INS [dm3] X_14077219_INS [dm6]	A	AA	5.020e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8435917	3R_8435917_SNP [dm3] 3R_12610195_SNP [dm6]	C	T	5.021e^-4	0.896	INTERGENIC
3R	8435920	3R_8435920_SNP [dm3] 3R_12610198_SNP [dm6]	T	C	5.021e^-4	0.896	INTERGENIC
3R	8435921	3R_8435921_SNP [dm3] 3R_12610199_SNP [dm6]	G	T	5.021e^-4	0.896	INTERGENIC
2L	14722985	2L_14722985_SNP [dm3] 2L_14722985_SNP [dm6]	C	T	5.025e^-4	0.896	INTERGENIC
2L	14723070	2L_14723070_SNP [dm3] 2L_14723070_SNP [dm6]	T	G	5.025e^-4	0.896	INTERGENIC
X	4981282	X_4981282_INS [dm3] X_5087249_INS [dm6]	G	GAATGG	5.042e^-4	0.896	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl
3L	12615831	3L_12615831_SNP [dm3] 3L_12622731_SNP [dm6]	C	A	5.048e^-4	0.896	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14351099	2R_14351099_SNP [dm3] 2R_18463594_SNP [dm6]	T	G	5.049e^-4	0.896	INTRON CG30116
X	11139011	X_11139011_SNP [dm3] X_11244978_SNP [dm6]	C	G	5.061e^-4	0.896	INTRON CG44422
2L	6887031	2L_6887031_SNP [dm3] 2L_6887031_SNP [dm6]	A	T	5.067e^-4	0.896	INTRON Nlg2	TF binding site BDTNP1_TFBS_twi
2L	6887035	2L_6887035_SNP [dm3] 2L_6887035_SNP [dm6]	C	T	5.067e^-4	0.896	INTRON Nlg2	TF binding site BDTNP1_TFBS_twi
2L	6887070	2L_6887070_SNP [dm3] 2L_6887070_SNP [dm6]	A	G	5.067e^-4	0.896	INTRON Nlg2
X	19732585	X_19732585_SNP [dm3] X_19838552_SNP [dm6]	C	T	5.069e^-4	0.896	INTRON pico
X	19732586	X_19732586_SNP [dm3] X_19838553_SNP [dm6]	A	G	5.069e^-4	0.896	INTRON pico
2L	6887132	2L_6887132_SNP [dm3] 2L_6887132_SNP [dm6]	A	G	5.094e^-4	0.896	INTRON Nlg2
2L	6887142	2L_6887142_SNP [dm3] 2L_6887142_SNP [dm6]	A	C	5.094e^-4	0.896	INTRON Nlg2
2L	4729176	2L_4729176_INS [dm3] 2L_4729176_INS [dm6]	G	GAGTGCTCCAGATTG...	5.096e^-4	0.896	INTERGENIC
3L	12780247	3L_12780247_SNP [dm3] 3L_12787147_SNP [dm6]	T	G	5.102e^-4	0.896	INTRON Atg1
3L	7310678	3L_7310678_SNP [dm3] 3L_7317578_SNP [dm6]	T	C	5.107e^-4	0.896	INTERGENIC
3L	17160690	3L_17160690_SNP [dm3] 3L_17167590_SNP [dm6]	G	A	5.118e^-4	0.896	DOWNSTREAM CR43433 INTRON Rbp6	TF binding site mE1_TFBS_chinmo
2L	13307824	2L_13307824_DEL [dm3] 2L_13307824_DEL [dm6]	AAT	C	5.128e^-4	0.896	UTR_3_PRIME CG43778 DOWNSTREAM CG16825 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	7946118	2L_7946118_SNP [dm3] 2L_7946118_SNP [dm6]	T	G	5.133e^-4	0.896	INTRON Snoo
2R	17939481	2R_17939481_SNP [dm3] 2R_22051976_SNP [dm6]	T	C	5.143e^-4	0.896	INTERGENIC
3L	13710223	3L_13710223_SNP [dm3] 3L_13717123_SNP [dm6]	A	T	5.143e^-4	0.896	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	16433835	3L_16433835_SNP [dm3] 3L_16440735_SNP [dm6]	G	A	5.143e^-4	0.896	INTRON CG33158 & 1 other
2L	7707253	2L_7707253_INS [dm3] 2L_7707253_INS [dm6]	A	AA	5.154e^-4	0.896	DOWNSTREAM CR44990 INTRON Tep3	TF binding site mE1_TFBS_inv
2L	7631962	2L_7631962_SNP [dm3] 2L_7631962_SNP [dm6]	T	G	5.163e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	9376198	3R_9376198_SNP [dm3] 3R_13550476_SNP [dm6]	C	T	5.165e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	27454593	3R_27454593_SNP [dm3] 3R_31628871_SNP [dm6]	T	C	5.168e^-4	0.896	INTRON kek6
2L	11816553	2L_11816553_SNP [dm3] 2L_11816553_SNP [dm6]	T	C	5.170e^-4	0.896	UTR_3_PRIME Pde1c
3L	2408534	3L_2408534_SNP [dm3] 3L_2408534_SNP [dm6]	G	A	5.171e^-4	0.896	UTR_3_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26974876	3R_26974876_SNP [dm3] 3R_31149154_SNP [dm6]	A	T	5.187e^-4	0.896	INTRON Gycbeta100B
3R	12354759	3R_12354759_SNP [dm3] 3R_16529037_SNP [dm6]	A	T	5.190e^-4	0.896	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5706879	2L_5706879_DEL [dm3] 2L_5706879_DEL [dm6]	TTTTT	T	5.199e^-4	0.896	INTRON CG7236
X	20533816	X_20533816_SNP [dm3] X_20662789_SNP [dm6]	T	A	5.220e^-4	0.896	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7529185	3R_7529185_SNP [dm3] 3R_11703463_SNP [dm6]	A	C	5.222e^-4	0.896	UPSTREAM I-t DOWNSTREAM CG14718 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	5.222e^-4	0.896	UTR_3_PRIME Syt1
2L	16006077	2L_16006077_SNP [dm3] 2L_16006077_SNP [dm6]	A	G	5.234e^-4	0.896	SYNONYMOUS_CODING CG31820 UPSTREAM CR44844 DOWNSTREAM CG13245 & 1 other INTRON beat-Ic
2R	15297852	2R_15297852_SNP [dm3] 2R_19410347_SNP [dm6]	T	C	5.244e^-4	0.896	SYNONYMOUS_CODING hts	TF binding site BDTNP1_TFBS_dl
3L	18000216	3L_18000216_SNP [dm3] 3L_18007116_SNP [dm6]	T	G	5.246e^-4	0.896	INTRON Eip75B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4719116	3R_4719116_SNP [dm3] 3R_8893394_SNP [dm6]	C	A	5.265e^-4	0.896	INTRON pyd
2R	9796970	2R_9796970_SNP [dm3] 2R_13909465_SNP [dm6]	A	C	5.266e^-4	0.896	INTRON shot
3R	25350755	3R_25350755_SNP [dm3] 3R_29525033_SNP [dm6]	C	T	5.306e^-4	0.896	INTERGENIC
2L	1087318	2L_1087318_SNP [dm3] 2L_1087318_SNP [dm6]	G	T	5.319e^-4	0.896	INTRON CG4629
3L	2916690	3L_2916690_SNP [dm3] 3L_2916690_SNP [dm6]	A	T	5.320e^-4	0.896	UPSTREAM CG9970 INTRON Shab
2L	9405070	2L_9405070_INS [dm3] 2L_9405070_INS [dm6]	A	ACATACA	5.325e^-4	0.896	INTRON Shawl
X	13460412	X_13460412_SNP [dm3] X_13566379_SNP [dm6]	T	C	5.336e^-4	0.896	INTRON Tango13	TF binding site BDTNP1_TFBS_prd
X	20318721	X_20318721_SNP [dm3] X_20447694_SNP [dm6]	A	G	5.345e^-4	0.896	DOWNSTREAM CG42578 INTERGENIC
2R	12125005	2R_12125005_SNP [dm3] 2R_16237500_SNP [dm6]	G	C	5.347e^-4	0.896	DOWNSTREAM krimp & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16929375	2R_16929375_SNP [dm3] 2R_21041870_SNP [dm6]	T	A	5.347e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16929377	2R_16929377_DEL [dm3] 2R_21041872_DEL [dm6]	TCCATACA	G	5.347e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16929822	2R_16929822_SNP [dm3] 2R_21042317_SNP [dm6]	T	C	5.347e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16930170	2R_16930170_SNP [dm3] 2R_21042665_SNP [dm6]	G	T	5.347e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9196465	3R_9196465_SNP [dm3] 3R_13370743_SNP [dm6]	C	A	5.354e^-4	0.896	DOWNSTREAM CheA87a INTRON Lip3
3R	9196475	3R_9196475_SNP [dm3] 3R_13370753_SNP [dm6]	T	C	5.354e^-4	0.896	DOWNSTREAM CheA87a INTRON Lip3
2L	1649715	2L_1649715_SNP [dm3] 2L_1649715_SNP [dm6]	C	A	5.355e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1649748	2L_1649748_SNP [dm3] 2L_1649748_SNP [dm6]	G	A	5.355e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18425291	X_18425291_SNP [dm3] X_18531258_SNP [dm6]	T	C	5.359e^-4	0.896	INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	13430666	2L_13430666_SNP [dm3] 2L_13430666_SNP [dm6]	C	T	5.391e^-4	0.896	INTRON CG42784
2L	1400701	2L_1400701_SNP [dm3] 2L_1400701_SNP [dm6]	T	C	5.396e^-4	0.896	INTRON lea
X	14325311	X_14325311_INS [dm3] X_14431278_INS [dm6]	G	GG	5.396e^-4	0.896	INTRON dpr8
2R	7437191	2R_7437191_SNP [dm3] 2R_11549686_SNP [dm6]	G	A	5.399e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	2700983	X_2700983_SNP [dm3] X_2806950_SNP [dm6]	G	A	5.409e^-4	0.896	INTRON kirre
3L	7834801	3L_7834801_SNP [dm3] 3L_7841701_SNP [dm6]	G	A	5.411e^-4	0.896	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	13541922	3L_13541922_SNP [dm3] 3L_13548822_SNP [dm6]	A	T	5.416e^-4	0.896	INTRON bru-3
3L	10181271	3L_10181271_SNP [dm3] 3L_10188171_SNP [dm6]	A	T	5.422e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3587773	2L_3587773_SNP [dm3] 2L_3587773_SNP [dm6]	T	G	5.431e^-4	0.896	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	12857897	2L_12857897_SNP [dm3] 2L_12857897_SNP [dm6]	A	G	5.433e^-4	0.896	INTERGENIC
3R	26823592	3R_26823592_SNP [dm3] 3R_30997870_SNP [dm6]	G	A	5.443e^-4	0.896	INTRON 5-HT7
X	7136782	X_7136782_SNP [dm3] X_7242749_SNP [dm6]	C	A	5.470e^-4	0.896	DOWNSTREAM CG9650 INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9172513	3L_9172513_SNP [dm3] 3L_9179413_SNP [dm6]	T	G	5.470e^-4	0.896	UPSTREAM Rdl INTRON Rdl	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14723026	2L_14723026_SNP [dm3] 2L_14723026_SNP [dm6]	C	A	5.477e^-4	0.896	INTERGENIC
X	13352020	X_13352020_SNP [dm3] X_13457987_SNP [dm6]	C	T	5.482e^-4	0.896	UPSTREAM CG34324 INTRON Neto
2L	13969488	2L_13969488_SNP [dm3] 2L_13969488_SNP [dm6]	C	T	5.483e^-4	0.896	UPSTREAM NimB5 INTRON NimB4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2648521	2L_2648521_SNP [dm3] 2L_2648521_SNP [dm6]	A	C	5.485e^-4	0.896	NON_SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 UPSTREAM CG9962 DOWNSTREAM CG43851
2R	11464499	2R_11464499_SNP [dm3] 2R_15576994_SNP [dm6]	A	C	5.485e^-4	0.896	INTERGENIC
X	14400544	X_14400544_SNP [dm3] X_14506511_SNP [dm6]	G	C	5.509e^-4	0.896	INTERGENIC
X	14400547	X_14400547_SNP [dm3] X_14506514_SNP [dm6]	A	T	5.509e^-4	0.896	INTERGENIC
3L	9476257	3L_9476257_SNP [dm3] 3L_9483157_SNP [dm6]	A	C	5.515e^-4	0.896	SYNONYMOUS_CODING Jarid2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24042569	3R_24042569_SNP [dm3] 3R_28216847_SNP [dm6]	A	G	5.515e^-4	0.896	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3R	14423442	3R_14423442_SNP [dm3] 3R_18597720_SNP [dm6]	A	T	5.521e^-4	0.896	UPSTREAM CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13784649	2R_13784649_SNP [dm3] 2R_17897144_SNP [dm6]	C	T	5.561e^-4	0.896	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20875775	X_20875775_SNP [dm3] X_21004748_SNP [dm6]	T	C	5.562e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20875815	X_20875815_SNP [dm3] X_21004788_SNP [dm6]	T	C	5.562e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	1024505	X_1024505_SNP [dm3] X_1130472_SNP [dm6]	G	A	5.566e^-4	0.896	INTRON CG3655	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16300282	2L_16300282_INS [dm3] 2L_16300282_INS [dm6]	T	TT	5.580e^-4	0.896	UTR_5_PRIME CG17328 UPSTREAM heix INTRON CG17328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	15147138	X_15147138_INS [dm3] X_15253105_INS [dm6]	A	AA	5.600e^-4	0.896	INTERGENIC
2L	16684478	2L_16684478_SNP [dm3] 2L_16684478_SNP [dm6]	T	A	5.614e^-4	0.896	UPSTREAM CG31807 & 1 other INTRON grp	TF binding site BDTNP1_TFBS_dl
2R	16115434	2R_16115434_SNP [dm3] 2R_20227929_SNP [dm6]	G	A	5.619e^-4	0.896	INTERGENIC
2R	16115436	2R_16115436_SNP [dm3] 2R_20227931_SNP [dm6]	G	T	5.619e^-4	0.896	INTERGENIC
2R	16115441	2R_16115441_SNP [dm3] 2R_20227936_SNP [dm6]	T	A	5.619e^-4	0.896	INTERGENIC
2L	3287151	2L_3287151_SNP [dm3] 2L_3287151_SNP [dm6]	C	A	5.627e^-4	0.896	UPSTREAM CR44485 INTERGENIC
2L	14368045	2L_14368045_SNP [dm3] 2L_14368045_SNP [dm6]	C	A	5.637e^-4	0.896	INTERGENIC
2R	19886410	2R_19886410_SNP [dm3] 2R_23998887_SNP [dm6]	G	A	5.641e^-4	0.896	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
2R	1331863	2R_1331863_SNP [dm3] 2R_5444358_SNP [dm6]	T	A	5.642e^-4	0.896	INTRON laccase2	transposable element FlyBase
X	19430542	X_19430542_SNP [dm3] X_19536509_SNP [dm6]	C	A	5.643e^-4	0.896	INTRON CG32532
3R	24930426	3R_24930426_SNP [dm3] 3R_29104704_SNP [dm6]	A	C	5.648e^-4	0.896	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9862231	2L_9862231_SNP [dm3] 2L_9862231_SNP [dm6]	C	A	5.649e^-4	0.896	INTRON nAChRalpha6
3R	26784085	3R_26784085_SNP [dm3] 3R_30958363_SNP [dm6]	A	G	5.649e^-4	0.896	INTERGENIC
3R	18382934	3R_18382934_SNP [dm3] 3R_22557212_SNP [dm6]	G	A	5.666e^-4	0.896	DOWNSTREAM bond INTERGENIC
3L	22171534	3L_22171534_DEL [dm3] 3L_22178434_DEL [dm6]	GTT	G	5.682e^-4	0.896	INTRON olf413
2R	12333458	2R_12333458_SNP [dm3] 2R_16445953_SNP [dm6]	G	T	5.688e^-4	0.896	UPSTREAM CG15925 INTERGENIC
3R	26995434	3R_26995434_SNP [dm3] 3R_31169712_SNP [dm6]	A	G	5.708e^-4	0.896	UPSTREAM stops INTRON Gycbeta100B
3R	26995435	3R_26995435_SNP [dm3] 3R_31169713_SNP [dm6]	C	A	5.708e^-4	0.896	UPSTREAM stops INTRON Gycbeta100B
2R	12552105	2R_12552105_SNP [dm3] 2R_16664600_SNP [dm6]	A	C	5.716e^-4	0.896	UPSTREAM Picot INTRON Picot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15628477	2L_15628477_SNP [dm3] 2L_15628477_SNP [dm6]	T	C	5.742e^-4	0.896	UPSTREAM CG7631 INTERGENIC
3R	16739498	3R_16739498_SNP [dm3] 3R_20913776_SNP [dm6]	T	C	5.743e^-4	0.896	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2916256	3L_2916256_SNP [dm3] 3L_2916256_SNP [dm6]	A	C	5.765e^-4	0.896	SYNONYMOUS_CODING CG9970 INTRON Shab
2L	13430646	2L_13430646_SNP [dm3] 2L_13430646_SNP [dm6]	C	T	5.773e^-4	0.896	INTRON CG42784
3L	13336552	3L_13336552_SNP [dm3] 3L_13343452_SNP [dm6]	T	A	5.796e^-4	0.896	DOWNSTREAM CR44559 INTERGENIC
3L	7232323	3L_7232323_SNP [dm3] 3L_7239223_SNP [dm6]	G	T	5.825e^-4	0.896	NON_SYNONYMOUS_CODING BHD DOWNSTREAM RpL18	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8926803	3L_8926803_SNP [dm3] 3L_8933703_SNP [dm6]	T	C	5.832e^-4	0.896	SYNONYMOUS_CODING CG43783
2L	11701982	2L_11701982_SNP [dm3] 2L_11701982_SNP [dm6]	A	G	5.841e^-4	0.896	INTERGENIC
3R	9760109	3R_9760109_SNP [dm3] 3R_13934387_SNP [dm6]	C	T	5.841e^-4	0.896	INTERGENIC
3L	13333754	3L_13333754_SNP [dm3] 3L_13340654_SNP [dm6]	T	A	5.846e^-4	0.896	INTERGENIC
3L	8756850	3L_8756850_INS [dm3] 3L_8763750_INS [dm6]	C	CC	5.848e^-4	0.896	INTRON Fhos
2L	8763015	2L_8763015_SNP [dm3] 2L_8763015_SNP [dm6]	C	G	5.865e^-4	0.896	INTERGENIC
3R	26995455	3R_26995455_SNP [dm3] 3R_31169733_SNP [dm6]	C	T	5.873e^-4	0.896	UPSTREAM stops INTRON Gycbeta100B
3R	19582843	3R_19582843_SNP [dm3] 3R_23757121_SNP [dm6]	T	G	5.875e^-4	0.896	SYNONYMOUS_CODING Hrd3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20526356	X_20526356_SNP [dm3] X_20655329_SNP [dm6]	C	T	5.881e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	12657982	3R_12657982_SNP [dm3] 3R_16832260_SNP [dm6]	G	T	5.883e^-4	0.896	EXON iab-8	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	14915726	2L_14915726_SNP [dm3] 2L_14915726_SNP [dm6]	C	A	5.888e^-4	0.896	INTRON CG42313
3R	835457	3R_835457_SNP [dm3] 3R_5009735_SNP [dm6]	G	T	5.922e^-4	0.896	INTRON CG2022
2L	10872186	2L_10872186_SNP [dm3] 2L_10872186_SNP [dm6]	A	G	5.925e^-4	0.896	EXON CR45454
3L	7088832	3L_7088832_SNP [dm3] 3L_7095732_SNP [dm6]	C	T	5.927e^-4	0.896	INTRON form3	TF binding site BDTNP1_TFBS_da
2R	9412365	2R_9412365_INS [dm3] 2R_13524860_INS [dm6]	A	AA	5.936e^-4	0.896	UPSTREAM CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad
2R	18321410	2R_18321410_SNP [dm3] 2R_22433905_SNP [dm6]	T	C	5.939e^-4	0.896	INTERGENIC
3R	5725755	3R_5725755_SNP [dm3] 3R_9900033_SNP [dm6]	T	A	5.949e^-4	0.896	INTRON Glut4EF
2L	9862245	2L_9862245_SNP [dm3] 2L_9862245_SNP [dm6]	G	T	5.959e^-4	0.896	INTRON nAChRalpha6
3L	2510264	3L_2510264_SNP [dm3] 3L_2510264_SNP [dm6]	T	C	5.972e^-4	0.896	NON_SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15336800	2L_15336800_SNP [dm3] 2L_15336800_SNP [dm6]	A	G	5.992e^-4	0.896	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15336801	2L_15336801_SNP [dm3] 2L_15336801_SNP [dm6]	C	T	5.992e^-4	0.896	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15343578	2L_15343578_SNP [dm3] 2L_15343578_SNP [dm6]	G	T	5.997e^-4	0.896	INTERGENIC
2L	15343721	2L_15343721_SNP [dm3] 2L_15343721_SNP [dm6]	A	T	5.997e^-4	0.896	INTERGENIC
3R	18358064	3R_18358064_SNP [dm3] 3R_22532342_SNP [dm6]	C	G	6.005e^-4	0.896	UTR_3_PRIME CG5326 UPSTREAM CG33093
X	17673061	X_17673061_INS [dm3] X_17779028_INS [dm6]	G	TCCATTTTTTCGACGGCGTT...	6.008e^-4	0.896	DOWNSTREAM unc-4 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	20433510	3L_20433510_DEL [dm3] 3L_20440410_DEL [dm6]	CATTGTTA	C	6.070e^-4	0.896	UPSTREAM CG11796 DOWNSTREAM CR45176 EXON CR43943
2R	16953718	2R_16953718_SNP [dm3] 2R_21066213_SNP [dm6]	A	G	6.075e^-4	0.896	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12804507	2R_12804507_SNP [dm3] 2R_16917002_SNP [dm6]	T	C	6.100e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2L	1074962	2L_1074962_SNP [dm3] 2L_1074962_SNP [dm6]	T	C	6.113e^-4	0.896	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	14723302	2L_14723302_SNP [dm3] 2L_14723302_SNP [dm6]	C	G	6.117e^-4	0.896	INTERGENIC
2L	5646230	2L_5646230_SNP [dm3] 2L_5646230_SNP [dm6]	G	C	6.134e^-4	0.896	INTRON CG31646	TF binding site mE1_TFBS_inv
X	2312230	X_2312230_SNP [dm3] X_2418197_SNP [dm6]	T	A	6.137e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_sens
3R	10504797	3R_10504797_SNP [dm3] 3R_14679075_SNP [dm6]	C	A	6.147e^-4	0.896	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	19845884	3R_19845884_SNP [dm3] 3R_24020162_SNP [dm6]	T	A	6.157e^-4	0.896	INTRON KrT95D
3L	10268038	3L_10268038_SNP [dm3] 3L_10274938_SNP [dm6]	C	T	6.174e^-4	0.896	DOWNSTREAM Or67d INTERGENIC
2L	8308906	2L_8308906_SNP [dm3] 2L_8308906_SNP [dm6]	C	T	6.186e^-4	0.896	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	5058168	2L_5058168_SNP [dm3] 2L_5058168_SNP [dm6]	G	A	6.186e^-4	0.896	UTR_5_PRIME CG31918 DOWNSTREAM Rpn11	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	16892157	3R_16892157_SNP [dm3] 3R_21066435_SNP [dm6]	T	C	6.209e^-4	0.896	INTRON AnxB9
3R	9310781	3R_9310781_SNP [dm3] 3R_13485059_SNP [dm6]	C	T	6.209e^-4	0.896	INTERGENIC
X	5115100	X_5115100_SNP [dm3] X_5221067_SNP [dm6]	A	C	6.256e^-4	0.896	INTRON CG15465 & 1 other
2L	19100189	2L_19100189_SNP [dm3] 2L_19100189_SNP [dm6]	T	G	6.270e^-4	0.896	INTRON Lim3
2R	7402770	2R_7402770_SNP [dm3] 2R_11515265_SNP [dm6]	C	A	6.275e^-4	0.896	INTERGENIC
X	1028623	X_1028623_INS [dm3] X_1134590_INS [dm6]	A	AA	6.275e^-4	0.896	UTR_5_PRIME CG3655	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1033414	X_1033414_SNP [dm3] X_1139381_SNP [dm6]	G	T	6.275e^-4	0.896	INTERGENIC
X	1036275	X_1036275_SNP [dm3] X_1142242_SNP [dm6]	A	T	6.275e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	1040409	X_1040409_SNP [dm3] X_1146376_SNP [dm6]	A	G	6.275e^-4	0.896	DOWNSTREAM CG14628 INTERGENIC	transposable element FlyBase
2L	14354891	2L_14354891_SNP [dm3] 2L_14354891_SNP [dm6]	A	T	6.291e^-4	0.896	UPSTREAM Rab14 DOWNSTREAM CR44851 INTRON l_2_34Fd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5214319	3R_5214319_DEL [dm3] 3R_9388597_DEL [dm6]	TT	T	6.301e^-4	0.896	INTRON FER
3L	3120867	3L_3120867_SNP [dm3] 3L_3120867_SNP [dm6]	G	A	6.303e^-4	0.896	SYNONYMOUS_CODING prominin-like
2R	11980274	2R_11980274_SNP [dm3] 2R_16092769_SNP [dm6]	C	A	6.304e^-4	0.896	INTRON Dg
3L	7061417	3L_7061417_SNP [dm3] 3L_7068317_SNP [dm6]	G	A	6.304e^-4	0.896	SYNONYMOUS_CODING CG32391 DOWNSTREAM CG14823 INTRON CG8641
3L	7089401	3L_7089401_SNP [dm3] 3L_7096301_SNP [dm6]	T	C	6.307e^-4	0.896	INTRON form3
3L	9196165	3L_9196165_SNP [dm3] 3L_9203065_SNP [dm6]	A	G	6.314e^-4	0.896	UTR_3_PRIME Slc45-1
3L	3039293	3L_3039293_SNP [dm3] 3L_3039293_SNP [dm6]	C	T	6.339e^-4	0.896	INTRON CG2162	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3039311	3L_3039311_SNP [dm3] 3L_3039311_SNP [dm6]	C	T	6.339e^-4	0.896	INTRON CG2162	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	13969049	2L_13969049_SNP [dm3] 2L_13969049_SNP [dm6]	G	A	6.348e^-4	0.896	SYNONYMOUS_CODING NimB4	TF binding site mE1_TFBS_cad
3L	14642136	3L_14642136_SNP [dm3] 3L_14649036_SNP [dm6]	C	T	6.348e^-4	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	6.349e^-4	0.896	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15125972	2L_15125972_SNP [dm3] 2L_15125972_SNP [dm6]	T	G	6.357e^-4	0.896	INTERGENIC
3R	25349630	3R_25349630_SNP [dm3] 3R_29523908_SNP [dm6]	C	T	6.378e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17670397	3L_17670397_SNP [dm3] 3L_17677297_SNP [dm6]	C	A	6.391e^-4	0.896	INTRON CG34251
3L	17670401	3L_17670401_SNP [dm3] 3L_17677301_SNP [dm6]	A	C	6.391e^-4	0.896	INTRON CG34251
3R	7307321	3R_7307321_SNP [dm3] 3R_11481599_SNP [dm6]	G	C	6.399e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	12605560	X_12605560_SNP [dm3] X_12711527_SNP [dm6]	C	A	6.399e^-4	0.896	SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_chinmo
3L	5848821	3L_5848821_DEL [dm3] 3L_5855721_DEL [dm6]	GTTTTTGCAGCGCTGCTTTG...	G	6.401e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	18357574	3R_18357574_SNP [dm3] 3R_22531852_SNP [dm6]	T	C	6.413e^-4	0.896	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
2L	14360079	2L_14360079_SNP [dm3] 2L_14360079_SNP [dm6]	G	T	6.414e^-4	0.896	NON_SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13697587	X_13697587_SNP [dm3] X_13803554_SNP [dm6]	A	C	6.414e^-4	0.896	SYNONYMOUS_CODING inaE	TF binding site BDTNP1_TFBS_Med
3R	7525925	3R_7525925_SNP [dm3] 3R_11700203_SNP [dm6]	C	T	6.419e^-4	0.896	UPSTREAM CG14718 INTERGENIC
3R	16130715	3R_16130715_INS [dm3] 3R_20304993_INS [dm6]	C	CC	6.426e^-4	0.896	UPSTREAM CG4367 INTERGENIC
2R	12804489	2R_12804489_SNP [dm3] 2R_16916984_SNP [dm6]	T	C	6.432e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2R	9412358	2R_9412358_SNP [dm3] 2R_13524853_SNP [dm6]	T	C	6.435e^-4	0.896	UPSTREAM CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad
X	19430562	X_19430562_SNP [dm3] X_19536529_SNP [dm6]	C	T	6.436e^-4	0.896	INTRON CG32532
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	6.469e^-4	0.896	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12780156	3L_12780156_SNP [dm3] 3L_12787056_SNP [dm6]	T	A	6.475e^-4	0.896	INTRON Atg1	TF binding site mE1_TFBS_cad
3L	5212793	3L_5212793_DEL [dm3] 3L_5219693_DEL [dm6]	ATACA	G	6.497e^-4	0.896	INTRON shep
2L	10030120	2L_10030120_SNP [dm3] 2L_10030120_SNP [dm6]	T	C	6.523e^-4	0.896	DOWNSTREAM CG13127 INTERGENIC
3L	16938408	3L_16938408_INS [dm3] 3L_16945308_INS [dm6]	A	AA	6.530e^-4	0.896	INTRON Obp73a
3L	3225741	3L_3225741_INS [dm3] 3L_3225741_INS [dm6]	A	AA	6.547e^-4	0.896	UPSTREAM CG11505 INTRON CG11505	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12048709	3R_12048709_SNP [dm3] 3R_16222987_SNP [dm6]	A	C	6.555e^-4	0.896	UPSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26784297	3R_26784297_SNP [dm3] 3R_30958575_SNP [dm6]	T	C	6.567e^-4	0.896	INTERGENIC
3R	18106323	3R_18106323_SNP [dm3] 3R_22280601_SNP [dm6]	C	G	6.592e^-4	0.896	INTRON SKIP
3L	14911515	3L_14911515_SNP [dm3] 3L_14918415_SNP [dm6]	G	T	6.592e^-4	0.896	INTRON DCX-EMAP
3L	15493031	3L_15493031_SNP [dm3] 3L_15499931_SNP [dm6]	C	T	6.592e^-4	0.896	INTRON CG7275	TF binding site mE1_TFBS_sens
2L	14364084	2L_14364084_SNP [dm3] 2L_14364084_SNP [dm6]	C	G	6.626e^-4	0.896	NON_SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad
3L	9346787	3L_9346787_SNP [dm3] 3L_9353687_SNP [dm6]	G	T	6.630e^-4	0.896	UPSTREAM CG32040 INTRON UGP	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	5078905	2L_5078905_SNP [dm3] 2L_5078905_SNP [dm6]	A	G	6.636e^-4	0.896	SYNONYMOUS_CODING pgant5
3L	18128850	3L_18128850_SNP [dm3] 3L_18135750_SNP [dm6]	G	A	6.655e^-4	0.896	DOWNSTREAM CR44669 INTERGENIC
3R	25350758	3R_25350758_INS [dm3] 3R_29525036_INS [dm6]	C	CATC	6.659e^-4	0.896	INTERGENIC
3R	4931121	3R_4931121_SNP [dm3] 3R_9105399_SNP [dm6]	G	C	6.686e^-4	0.896	INTRON pum
3L	10779284	3L_10779284_SNP [dm3] 3L_10786184_SNP [dm6]	T	A	6.688e^-4	0.896	DOWNSTREAM CR44544 INTERGENIC
3L	10779342	3L_10779342_SNP [dm3] 3L_10786242_SNP [dm6]	G	A	6.688e^-4	0.896	DOWNSTREAM CR44544 INTERGENIC
2L	8010214	2L_8010214_SNP [dm3] 2L_8010214_SNP [dm6]	G	C	6.702e^-4	0.896	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11201988	3L_11201988_SNP [dm3] 3L_11208888_SNP [dm6]	T	G	6.712e^-4	0.896	INTRON Ube3a	TF binding site mE1_TFBS_cad
3R	14699040	3R_14699040_SNP [dm3] 3R_18873318_SNP [dm6]	A	G	6.713e^-4	0.896	INTERGENIC
X	14301489	X_14301489_SNP [dm3] X_14407456_SNP [dm6]	T	G	6.713e^-4	0.896	INTRON dpr8
X	14301507	X_14301507_SNP [dm3] X_14407474_SNP [dm6]	G	A	6.713e^-4	0.896	INTRON dpr8
3L	8621023	3L_8621023_SNP [dm3] 3L_8627923_SNP [dm6]	C	T	6.723e^-4	0.896	INTRON Zasp66	TF binding site mE1_TFBS_bab1
3R	848110	3R_848110_SNP [dm3] 3R_5022388_SNP [dm6]	C	T	6.740e^-4	0.896	DOWNSTREAM CR45585 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15628467	2L_15628467_SNP [dm3] 2L_15628467_SNP [dm6]	C	A	6.752e^-4	0.896	UPSTREAM CG7631 INTERGENIC
2L	15628473	2L_15628473_SNP [dm3] 2L_15628473_SNP [dm6]	G	T	6.752e^-4	0.896	UPSTREAM CG7631 INTERGENIC
X	14821947	X_14821947_SNP [dm3] X_14927914_SNP [dm6]	G	C	6.763e^-4	0.896	NON_SYNONYMOUS_CODING CG32591 INTRON Flo2	TF binding site mE1_TFBS_chinmo
3R	20254450	3R_20254450_SNP [dm3] 3R_24428728_SNP [dm6]	T	G	6.766e^-4	0.896	INTRON nAChRalpha1
X	20189908	X_20189908_INS [dm3] X_20318881_INS [dm6]	A	AGCA	6.766e^-4	0.896	INTRON CG1504
2L	10382440	2L_10382440_INS [dm3] 2L_10382440_INS [dm6]	C	CAGAAAC	6.769e^-4	0.896	UTR_3_PRIME gny DOWNSTREAM gny	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	3858221	2L_3858221_SNP [dm3] 2L_3858221_SNP [dm6]	C	G	6.773e^-4	0.896	INTERGENIC
3R	8481797	3R_8481797_SNP [dm3] 3R_12656075_SNP [dm6]	T	C	6.803e^-4	0.896	INTRON CG6225
3L	9902974	3L_9902974_SNP [dm3] 3L_9909874_SNP [dm6]	A	G	6.805e^-4	0.896	INTRON CG34356
2L	13441488	2L_13441488_SNP [dm3] 2L_13441488_SNP [dm6]	A	C	6.820e^-4	0.896	INTRON CG42784 EXON CR45683
2L	1049463	2L_1049463_SNP [dm3] 2L_1049463_SNP [dm6]	C	T	6.824e^-4	0.896	DOWNSTREAM S INTERGENIC
2L	7101775	2L_7101775_SNP [dm3] 2L_7101775_SNP [dm6]	C	T	6.840e^-4	0.896	INTRON Pvf3
3R	19449090	3R_19449090_SNP [dm3] 3R_23623368_SNP [dm6]	C	T	6.859e^-4	0.896	INTRON CG31145
2R	19529370	2R_19529370_SNP [dm3] 2R_23641847_SNP [dm6]	T	A	6.861e^-4	0.896	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6494021	2L_6494021_SNP [dm3] 2L_6494021_SNP [dm6]	C	T	6.872e^-4	0.896	NON_SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16222318	2L_16222318_SNP [dm3] 2L_16222318_SNP [dm6]	A	G	6.885e^-4	0.896	INTERGENIC
3L	10378190	3L_10378190_SNP [dm3] 3L_10385090_SNP [dm6]	T	C	6.901e^-4	0.896	INTERGENIC
3R	24816190	3R_24816190_SNP [dm3] 3R_28990468_SNP [dm6]	G	C	6.906e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	9195969	3R_9195969_SNP [dm3] 3R_13370247_SNP [dm6]	G	C	6.909e^-4	0.896	NON_SYNONYMOUS_CODING CheA87a UTR_3_PRIME Lip3 DOWNSTREAM Dic1
3R	26974680	3R_26974680_SNP [dm3] 3R_31148958_SNP [dm6]	T	A	6.916e^-4	0.896	INTRON Gycbeta100B
3R	26974687	3R_26974687_SNP [dm3] 3R_31148965_SNP [dm6]	C	T	6.916e^-4	0.896	INTRON Gycbeta100B
3L	10262594	3L_10262594_SNP [dm3] 3L_10269494_SNP [dm6]	A	C	6.940e^-4	0.896	EXON CR45242	regulatory region REDfly_CRMs
3L	8868027	3L_8868027_SNP [dm3] 3L_8874927_SNP [dm6]	A	T	6.942e^-4	0.896	INTRON dally
X	4007219	X_4007219_SNP [dm3] X_4113186_SNP [dm6]	A	C	6.943e^-4	0.896	SYNONYMOUS_CODING Nsun2 UPSTREAM dgt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25250143	3R_25250143_SNP [dm3] 3R_29424421_SNP [dm6]	T	C	6.947e^-4	0.896	INTRON Ptp99A
3R	25250146	3R_25250146_SNP [dm3] 3R_29424424_SNP [dm6]	A	T	6.947e^-4	0.896	SPLICE_SITE_REGION Ptp99A INTRON Ptp99A
3L	13251350	3L_13251350_SNP [dm3] 3L_13258250_SNP [dm6]	T	A	6.963e^-4	0.896	INTRON caps
2L	4729084	2L_4729084_INS [dm3] 2L_4729084_INS [dm6]	T	TTCGGACT	6.973e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25905237	3R_25905237_SNP [dm3] 3R_30079515_SNP [dm6]	A	G	6.992e^-4	0.896	INTRON sima
3R	25905238	3R_25905238_SNP [dm3] 3R_30079516_SNP [dm6]	C	T	6.992e^-4	0.896	INTRON sima
3R	25905299	3R_25905299_SNP [dm3] 3R_30079577_SNP [dm6]	G	A	6.992e^-4	0.896	INTRON sima
3R	5202189	3R_5202189_SNP [dm3] 3R_9376467_SNP [dm6]	G	A	6.995e^-4	0.896	INTRON FER	TF binding site BDTNP1_TFBS_twi
2R	12457030	2R_12457030_SNP [dm3] 2R_16569525_SNP [dm6]	C	T	6.999e^-4	0.896	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18890366	2L_18890366_SNP [dm3] 2L_18890366_SNP [dm6]	A	T	7.005e^-4	0.896	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9130183	X_9130183_SNP [dm3] X_9236150_SNP [dm6]	C	T	7.014e^-4	0.896	SYNONYMOUS_CODING Ir8a DOWNSTREAM mir-4916 & 1 other
X	9130219	X_9130219_SNP [dm3] X_9236186_SNP [dm6]	A	T	7.014e^-4	0.896	SPLICE_SITE_REGION Ir8a DOWNSTREAM mir-4916 & 1 other INTRON Ir8a
2L	8846508	2L_8846508_SNP [dm3] 2L_8846508_SNP [dm6]	C	T	7.044e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18164845	2R_18164845_INS [dm3] 2R_22277340_INS [dm6]	C	ATCGCTTT	7.044e^-4	0.896	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18164908	2R_18164908_SNP [dm3] 2R_22277403_SNP [dm6]	C	T	7.044e^-4	0.896	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18164918	2R_18164918_SNP [dm3] 2R_22277413_SNP [dm6]	C	T	7.044e^-4	0.896	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22570480	3L_22570480_SNP [dm3] 3L_22577380_SNP [dm6]	A	C	7.044e^-4	0.896	INTERGENIC
3L	7827849	3L_7827849_SNP [dm3] 3L_7834749_SNP [dm6]	T	C	7.044e^-4	0.896	INTRON Pdp1
3L	9686649	3L_9686649_SNP [dm3] 3L_9693549_SNP [dm6]	G	A	7.044e^-4	0.896	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9687137	3L_9687137_SNP [dm3] 3L_9694037_SNP [dm6]	T	C	7.044e^-4	0.896	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9687160	3L_9687160_SNP [dm3] 3L_9694060_SNP [dm6]	G	T	7.044e^-4	0.896	UPSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9688709	3L_9688709_SNP [dm3] 3L_9695609_SNP [dm6]	C	G	7.044e^-4	0.896	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9688724	3L_9688724_SNP [dm3] 3L_9695624_SNP [dm6]	T	A	7.044e^-4	0.896	UPSTREAM CG6767 INTRON CG6767 EXON CR45121	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9689632	3L_9689632_INS [dm3] 3L_9696532_INS [dm6]	G	AA	7.044e^-4	0.896	DOWNSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9690515	3L_9690515_SNP [dm3] 3L_9697415_SNP [dm6]	T	A	7.044e^-4	0.896	UPSTREAM CG6767 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9691011	3L_9691011_SNP [dm3] 3L_9697911_SNP [dm6]	C	A	7.044e^-4	0.896	UPSTREAM UbcD4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9691023	3L_9691023_SNP [dm3] 3L_9697923_SNP [dm6]	C	T	7.044e^-4	0.896	UPSTREAM UbcD4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9813023	3L_9813023_SNP [dm3] 3L_9819923_SNP [dm6]	A	T	7.044e^-4	0.896	INTRON CG43897
X	17254536	X_17254536_SNP [dm3] X_17360503_SNP [dm6]	T	A	7.044e^-4	0.896	INTERGENIC
X	17254550	X_17254550_SNP [dm3] X_17360517_SNP [dm6]	C	T	7.044e^-4	0.896	INTERGENIC
X	17254629	X_17254629_INS [dm3] X_17360596_INS [dm6]	G	GAG	7.044e^-4	0.896	INTERGENIC
X	17254632	X_17254632_SNP [dm3] X_17360599_SNP [dm6]	A	G	7.044e^-4	0.896	INTERGENIC
X	17254649	X_17254649_DEL [dm3] X_17360616_DEL [dm6]	ATTCA	A	7.044e^-4	0.896	INTERGENIC
X	20875794	X_20875794_SNP [dm3] X_21004767_SNP [dm6]	T	A	7.075e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	14368068	2L_14368068_SNP [dm3] 2L_14368068_SNP [dm6]	T	G	7.098e^-4	0.896	INTERGENIC
3L	14640201	3L_14640201_SNP [dm3] 3L_14647101_SNP [dm6]	G	A	7.114e^-4	0.896	INTRON dlp
3L	14641706	3L_14641706_SNP [dm3] 3L_14648606_SNP [dm6]	C	A	7.114e^-4	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	5666930	3L_5666930_SNP [dm3] 3L_5673830_SNP [dm6]	T	C	7.117e^-4	0.896	SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2615735	3L_2615735_SNP [dm3] 3L_2615735_SNP [dm6]	T	C	7.138e^-4	0.896	INTRON Pxn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1605240	3L_1605240_SNP [dm3] 3L_1605240_SNP [dm6]	A	C	7.161e^-4	0.896	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
3L	11216874	3L_11216874_SNP [dm3] 3L_11223774_SNP [dm6]	G	A	7.165e^-4	0.896	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6666830	3L_6666830_INS [dm3] 3L_6673730_INS [dm6]	A	AT	7.176e^-4	0.896	INTERGENIC
3L	21807959	3L_21807959_SNP [dm3] 3L_21814859_SNP [dm6]	G	A	7.183e^-4	0.896	SPLICE_SITE_REGION eg UPSTREAM eg INTRON eg
2L	14366023	2L_14366023_SNP [dm3] 2L_14366023_SNP [dm6]	C	T	7.185e^-4	0.896	UTR_3_PRIME spel1 DOWNSTREAM spel1
3R	26957476	3R_26957476_SNP [dm3] 3R_31131754_SNP [dm6]	T	C	7.186e^-4	0.896	UPSTREAM CR43458 INTERGENIC
2L	13500721	2L_13500721_SNP [dm3] 2L_13500721_SNP [dm6]	G	A	7.186e^-4	0.896	UTR_3_PRIME B4 DOWNSTREAM CG42784	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	2648501	2L_2648501_SNP [dm3] 2L_2648501_SNP [dm6]	A	T	7.195e^-4	0.896	NON_SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 UPSTREAM CG9962 DOWNSTREAM CG43851
X	21452450	X_21452450_SNP [dm3] X_21581423_SNP [dm6]	A	T	7.228e^-4	0.896	INTERGENIC
2R	15940336	2R_15940336_SNP [dm3] 2R_20052831_SNP [dm6]	C	T	7.241e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15740889	2L_15740889_SNP [dm3] 2L_15740889_SNP [dm6]	T	A	7.242e^-4	0.896	UTR_5_PRIME CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12236603	2L_12236603_INS [dm3] 2L_12236603_INS [dm6]	G	GG	7.245e^-4	0.896	INTRON aret
X	6735080	X_6735080_DEL [dm3] X_6841047_DEL [dm6]	AA	A	7.257e^-4	0.896	INTRON CG14435
3L	17670710	3L_17670710_SNP [dm3] 3L_17677610_SNP [dm6]	C	G	7.291e^-4	0.896	INTRON CG34251
3R	25954454	3R_25954454_SNP [dm3] 3R_30128732_SNP [dm6]	A	G	7.292e^-4	0.896	SYNONYMOUS_CODING Ppi1 START_GAINED Ppi1 UTR_5_PRIME Ppi1 DOWNSTREAM CG31029
3L	2626901	3L_2626901_SNP [dm3] 3L_2626901_SNP [dm6]	T	A	7.299e^-4	0.896	INTRON Pxn
2L	2654792	2L_2654792_SNP [dm3] 2L_2654792_SNP [dm6]	A	C	7.301e^-4	0.896	NON_SYNONYMOUS_CODING Or23a UPSTREAM Prosbeta4R2 DOWNSTREAM Prosbeta4R1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25852732	3R_25852732_DEL [dm3] 3R_30027010_DEL [dm6]	AAG	T	7.312e^-4	0.896	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25852737	3R_25852737_DEL [dm3] 3R_30027015_DEL [dm6]	AGAATATTTACAATT...	A	7.312e^-4	0.896	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25852753	3R_25852753_DEL [dm3] 3R_30027031_DEL [dm6]	GTATATTCCA	G	7.312e^-4	0.896	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25852765	3R_25852765_SNP [dm3] 3R_30027043_SNP [dm6]	A	G	7.312e^-4	0.896	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25852798	3R_25852798_SNP [dm3] 3R_30027076_SNP [dm6]	A	T	7.312e^-4	0.896	UPSTREAM Axn INTRON Axn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14555179	2L_14555179_DEL [dm3] 2L_14555179_DEL [dm6]	ATGTCCACACTGTTTTTCCC...	A	7.320e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
3L	8164454	3L_8164454_SNP [dm3] 3L_8171354_SNP [dm6]	A	G	7.323e^-4	0.896	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi
2L	1051010	2L_1051010_SNP [dm3] 2L_1051010_SNP [dm6]	A	T	7.328e^-4	0.896	UTR_3_PRIME S DOWNSTREAM S
2L	1051781	2L_1051781_SNP [dm3] 2L_1051781_SNP [dm6]	G	T	7.328e^-4	0.896	UTR_3_PRIME S DOWNSTREAM S	TF binding site mE1_TFBS_cad
2L	13983057	2L_13983057_SNP [dm3] 2L_13983057_SNP [dm6]	C	A	7.330e^-4	0.896	UTR_3_PRIME NimC2 & 1 other DOWNSTREAM NimC2
2L	14555249	2L_14555249_SNP [dm3] 2L_14555249_SNP [dm6]	T	A	7.340e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
3L	8566291	3L_8566291_SNP [dm3] 3L_8573191_SNP [dm6]	C	T	7.347e^-4	0.896	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea INTRON rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1531066	X_1531066_SNP [dm3] X_1637033_SNP [dm6]	C	A	7.347e^-4	0.896	SYNONYMOUS_CODING br INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	20498719	X_20498719_SNP [dm3] X_20627692_SNP [dm6]	G	A	7.347e^-4	0.896	INTERGENIC
2R	19851341	2R_19851341_SNP [dm3] 2R_23963818_SNP [dm6]	C	T	7.347e^-4	0.896	SYNONYMOUS_CODING Fmo-1 UPSTREAM Alas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	12853294	2L_12853294_SNP [dm3] 2L_12853294_SNP [dm6]	G	C	7.351e^-4	0.896	INTERGENIC
2L	12853828	2L_12853828_SNP [dm3] 2L_12853828_SNP [dm6]	A	G	7.351e^-4	0.896	INTERGENIC
3L	13336679	3L_13336679_SNP [dm3] 3L_13343579_SNP [dm6]	A	C	7.354e^-4	0.896	EXON CR44559
2L	14267199	2L_14267199_SNP [dm3] 2L_14267199_SNP [dm6]	A	C	7.355e^-4	0.896	INTRON wb
X	16669479	X_16669479_SNP [dm3] X_16775446_SNP [dm6]	G	A	7.384e^-4	0.896	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18625676	X_18625676_SNP [dm3] X_18731643_SNP [dm6]	T	C	7.389e^-4	0.896	UPSTREAM CR45512 INTERGENIC
2L	17542237	2L_17542237_SNP [dm3] 2L_17542237_SNP [dm6]	C	A	7.395e^-4	0.896	EXON CR43304
2R	14982063	2R_14982063_SNP [dm3] 2R_19094558_SNP [dm6]	G	A	7.400e^-4	0.896	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
3L	11791879	3L_11791879_SNP [dm3] 3L_11798779_SNP [dm6]	C	T	7.418e^-4	0.896	UTR_3_PRIME Klp68D DOWNSTREAM CG10361
3R	12061612	3R_12061612_SNP [dm3] 3R_16235890_SNP [dm6]	T	C	7.423e^-4	0.896	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12061730	3R_12061730_SNP [dm3] 3R_16236008_SNP [dm6]	T	A	7.423e^-4	0.896	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4740113	3L_4740113_SNP [dm3] 3L_4740113_SNP [dm6]	G	T	7.445e^-4	0.896	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14302410	X_14302410_SNP [dm3] X_14408377_SNP [dm6]	A	T	7.445e^-4	0.896	INTRON dpr8
3R	24213529	3R_24213529_SNP [dm3] 3R_28387807_SNP [dm6]	T	C	7.451e^-4	0.896	INTERGENIC
2L	10030169	2L_10030169_SNP [dm3] 2L_10030169_SNP [dm6]	C	T	7.453e^-4	0.896	DOWNSTREAM CG13127 INTERGENIC
3L	12895720	3L_12895720_SNP [dm3] 3L_12902620_SNP [dm6]	T	A	7.456e^-4	0.896	UTR_5_PRIME CG12520 DOWNSTREAM CG32117
3L	12895827	3L_12895827_SNP [dm3] 3L_12902727_SNP [dm6]	T	C	7.456e^-4	0.896	UTR_5_PRIME CG12520 DOWNSTREAM CG32117
3L	10364122	3L_10364122_INS [dm3] 3L_10371022_INS [dm6]	T	TT	7.463e^-4	0.896	INTERGENIC
3L	10364125	3L_10364125_SNP [dm3] 3L_10371025_SNP [dm6]	A	G	7.463e^-4	0.896	INTERGENIC
X	14462283	X_14462283_SNP [dm3] X_14568250_SNP [dm6]	A	C	7.466e^-4	0.896	INTERGENIC
2L	20128899	2L_20128899_SNP [dm3] 2L_20128899_SNP [dm6]	G	A	7.482e^-4	0.896	INTERGENIC
X	21927585	X_21927585_SNP [dm3] X_22525749_SNP [dm6]	A	G	7.484e^-4	0.896	INTRON CG17600
X	6451261	X_6451261_SNP [dm3] X_6557228_SNP [dm6]	T	C	7.486e^-4	0.896	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
X	6451267	X_6451267_SNP [dm3] X_6557234_SNP [dm6]	C	A	7.486e^-4	0.896	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	10283142	2L_10283142_SNP [dm3] 2L_10283142_SNP [dm6]	T	C	7.491e^-4	0.896	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
2R	11471572	2R_11471572_SNP [dm3] 2R_15584067_SNP [dm6]	G	C	7.493e^-4	0.896	INTERGENIC
2R	11471586	2R_11471586_SNP [dm3] 2R_15584081_SNP [dm6]	A	G	7.493e^-4	0.896	INTERGENIC
2R	11471591	2R_11471591_SNP [dm3] 2R_15584086_SNP [dm6]	A	T	7.493e^-4	0.896	INTERGENIC
2R	11471609	2R_11471609_SNP [dm3] 2R_15584104_SNP [dm6]	T	C	7.493e^-4	0.896	INTERGENIC
2L	19363380	2L_19363380_SNP [dm3] 2L_19363380_SNP [dm6]	A	G	7.504e^-4	0.896	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19896480	2R_19896480_SNP [dm3] 2R_24008957_SNP [dm6]	A	G	7.525e^-4	0.896	SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_cad
3L	12615793	3L_12615793_SNP [dm3] 3L_12622693_SNP [dm6]	T	G	7.545e^-4	0.896	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20242937	2L_20242937_INS [dm3] 2L_20242937_INS [dm6]	G	GACCTTGTCGTTCTCTTCGC...	7.549e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	14915647	2L_14915647_SNP [dm3] 2L_14915647_SNP [dm6]	A	G	7.549e^-4	0.896	INTRON CG42313
2L	15628408	2L_15628408_SNP [dm3] 2L_15628408_SNP [dm6]	G	C	7.551e^-4	0.896	UPSTREAM CG7631 INTERGENIC
3R	12644778	3R_12644778_SNP [dm3] 3R_16819056_SNP [dm6]	G	A	7.560e^-4	0.896	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10286174	3L_10286174_SNP [dm3] 3L_10293074_SNP [dm6]	A	C	7.567e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14443230	3L_14443230_SNP [dm3] 3L_14450130_SNP [dm6]	A	T	7.567e^-4	0.896	INTRON bbg
X	3982105	X_3982105_SNP [dm3] X_4088072_SNP [dm6]	T	G	7.568e^-4	0.896	SYNONYMOUS_CODING CG43689 UTR_3_PRIME CG43689 DOWNSTREAM CG43689
2L	13216287	2L_13216287_SNP [dm3] 2L_13216287_SNP [dm6]	A	G	7.568e^-4	0.896	UPSTREAM kek4 DOWNSTREAM CG9426 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5201094	3R_5201094_SNP [dm3] 3R_9375372_SNP [dm6]	A	T	7.568e^-4	0.896	UPSTREAM FER INTRON FER	regulatory region REDfly_CRMs
X	2705446	X_2705446_SNP [dm3] X_2811413_SNP [dm6]	G	A	7.582e^-4	0.896	DOWNSTREAM CG12498 INTRON kirre
2L	14369436	2L_14369436_INS [dm3] 2L_14369436_INS [dm6]	C	CCATTAAACACCTT...	7.584e^-4	0.896	INTERGENIC
2L	19817600	2L_19817600_SNP [dm3] 2L_19817600_SNP [dm6]	A	C	7.591e^-4	0.896	INTRON sick	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	14660404	3L_14660404_SNP [dm3] 3L_14667304_SNP [dm6]	C	T	7.591e^-4	0.896	SYNONYMOUS_CODING dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26995431	3R_26995431_SNP [dm3] 3R_31169709_SNP [dm6]	T	C	7.591e^-4	0.896	UPSTREAM stops INTRON Gycbeta100B
3L	13226841	3L_13226841_SNP [dm3] 3L_13233741_SNP [dm6]	G	A	7.600e^-4	0.896	INTRON caps
3R	13574720	3R_13574720_SNP [dm3] 3R_17748998_SNP [dm6]	T	A	7.605e^-4	0.896	INTERGENIC
2R	14396573	2R_14396573_SNP [dm3] 2R_18509068_SNP [dm6]	C	T	7.614e^-4	0.896	INTERGENIC
3L	11451450	3L_11451450_SNP [dm3] 3L_11458350_SNP [dm6]	C	T	7.626e^-4	0.896	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
2L	12865350	2L_12865350_SNP [dm3] 2L_12865350_SNP [dm6]	T	C	7.637e^-4	0.896	INTERGENIC
3L	17004247	3L_17004247_SNP [dm3] 3L_17011147_SNP [dm6]	A	C	7.640e^-4	0.896	INTRON CG3764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12662305	X_12662305_SNP [dm3] X_12768272_SNP [dm6]	C	T	7.654e^-4	0.896	INTRON CG3812
2L	7707259	2L_7707259_SNP [dm3] 2L_7707259_SNP [dm6]	G	A	7.656e^-4	0.896	DOWNSTREAM CR44990 INTRON Tep3	TF binding site mE1_TFBS_inv
2L	19828932	2L_19828932_SNP [dm3] 2L_19828932_SNP [dm6]	C	G	7.657e^-4	0.896	INTRON sick	TF binding site mE1_TFBS_cad
2L	5760144	2L_5760144_SNP [dm3] 2L_5760144_SNP [dm6]	C	A	7.664e^-4	0.896	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
X	14410267	X_14410267_SNP [dm3] X_14516234_SNP [dm6]	A	G	7.665e^-4	0.896	INTERGENIC
3L	22002567	3L_22002567_INS [dm3] 3L_22009467_INS [dm6]	T	TT	7.683e^-4	0.896	INTERGENIC

By genomic position
Variant impact
Gene name

daughtersTotal phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results