DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.452e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1309 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	8809578	3L_8809578_SNP [dm3] 3L_8816478_SNP [dm6]	T	A	6.525e^-6	0.929	INTERGENIC
3R	10249200	3R_10249200_SNP [dm3] 3R_14423478_SNP [dm6]	A	G	7.103e^-6	0.929	UPSTREAM CR44176 INTRON cv-c
2L	4442692	2L_4442692_SNP [dm3] 2L_4442692_SNP [dm6]	C	A	1.196e^-5	0.929	SYNONYMOUS_CODING CG15432 UPSTREAM Sfp24F DOWNSTREAM morgue	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	10249771	3R_10249771_SNP [dm3] 3R_14424049_SNP [dm6]	G	A	1.341e^-5	0.929	INTRON cv-c
2R	7070027	2R_7070027_SNP [dm3] 2R_11182522_SNP [dm6]	T	G	2.071e^-5	0.929	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7070036	2R_7070036_SNP [dm3] 2R_11182531_SNP [dm6]	G	C	2.071e^-5	0.929	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13577007	X_13577007_SNP [dm3] X_13682974_SNP [dm6]	A	G	2.438e^-5	0.929	UTR_5_PRIME CG11158
X	13866409	X_13866409_SNP [dm3] X_13972376_SNP [dm6]	T	G	2.466e^-5	0.929	INTRON mamo
2L	7012816	2L_7012816_SNP [dm3] 2L_7012816_SNP [dm6]	C	G	2.891e^-5	0.929	UPSTREAM CG43322 DOWNSTREAM CG43321 INTERGENIC
2R	9610105	2R_9610105_DEL [dm3] 2R_13722600_DEL [dm6]	GG	G	3.029e^-5	0.929	INTRON fas
3R	10249290	3R_10249290_SNP [dm3] 3R_14423568_SNP [dm6]	C	T	3.157e^-5	0.929	INTRON cv-c
X	17274549	X_17274549_SNP [dm3] X_17380516_SNP [dm6]	G	T	3.170e^-5	0.929	INTERGENIC
3L	17740227	3L_17740227_SNP [dm3] 3L_17747127_SNP [dm6]	G	A	3.631e^-5	0.929	UPSTREAM CG6034 INTRON Ccn
3L	17740673	3L_17740673_SNP [dm3] 3L_17747573_SNP [dm6]	C	T	3.631e^-5	0.929	UPSTREAM CG6034 INTRON Ccn
2L	4349985	2L_4349985_SNP [dm3] 2L_4349985_SNP [dm6]	C	G	3.684e^-5	0.929	DOWNSTREAM CR44699 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	9886678	3R_9886678_SNP [dm3] 3R_14060956_SNP [dm6]	A	T	3.882e^-5	0.929	INTRON foxo	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	18593697	3R_18593697_INS [dm3] 3R_22767975_INS [dm6]	A	AA	3.927e^-5	0.929	UPSTREAM CG13841 DOWNSTREAM CG43091 & 1 other INTRON Usp12-46 & 1 other
2L	16665677	2L_16665677_SNP [dm3] 2L_16665677_SNP [dm6]	G	C	3.937e^-5	0.929	INTRON Trpgamma	transposable element FlyBase
X	3153646	X_3153646_SNP [dm3] X_3259613_SNP [dm6]	G	C	4.295e^-5	0.929	INTRON dnc
2R	18538508	2R_18538508_SNP [dm3] 2R_22651003_SNP [dm6]	A	C	4.419e^-5	0.929	INTRON nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16122919	2R_16122919_SNP [dm3] 2R_20235414_SNP [dm6]	C	G	4.502e^-5	0.929	UPSTREAM CG44625 & 1 other DOWNSTREAM CG11044 & 1 other INTERGENIC
3L	12606182	3L_12606182_SNP [dm3] 3L_12613082_SNP [dm6]	A	G	4.774e^-5	0.929	INTRON caup	silencer mE1_HDAC_PRE
3L	8472576	3L_8472576_SNP [dm3] 3L_8479476_SNP [dm6]	A	C	4.792e^-5	0.929	SYNONYMOUS_CODING CG43163	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	25897263	3R_25897263_SNP [dm3] 3R_30071541_SNP [dm6]	C	T	5.014e^-5	0.929	INTRON sima
3L	12606207	3L_12606207_SNP [dm3] 3L_12613107_SNP [dm6]	T	A	5.443e^-5	0.929	INTRON caup	silencer mE1_HDAC_PRE
3L	12606208	3L_12606208_SNP [dm3] 3L_12613108_SNP [dm6]	T	A	5.443e^-5	0.929	INTRON caup	silencer mE1_HDAC_PRE
3L	2365224	3L_2365224_SNP [dm3] 3L_2365224_SNP [dm6]	G	A	5.557e^-5	0.929	INTERGENIC
3L	2365246	3L_2365246_INS [dm3] 3L_2365246_INS [dm6]	T	TGGTT	5.557e^-5	0.929	INTERGENIC
2R	4709932	2R_4709932_SNP [dm3] 2R_8822427_SNP [dm6]	C	G	5.649e^-5	0.929	INTRON sns	TF binding site mE1_TFBS_chinmo
2L	19951553	2L_19951553_DEL [dm3] 2L_19951553_DEL [dm6]	TA	G	5.677e^-5	0.929	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15030639	2R_15030639_SNP [dm3] 2R_19143134_SNP [dm6]	C	T	5.786e^-5	0.929	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	26580162	3R_26580162_SNP [dm3] 3R_30754440_SNP [dm6]	G	C	5.887e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	6329796	2L_6329796_SNP [dm3] 2L_6329796_SNP [dm6]	T	G	5.913e^-5	0.929	INTRON PDZ-GEF	TF binding site mE1_TFBS_cad
3L	17739962	3L_17739962_SNP [dm3] 3L_17746862_SNP [dm6]	G	A	5.963e^-5	0.929	UPSTREAM CG6034 INTRON Ccn
3L	17738232	3L_17738232_SNP [dm3] 3L_17745132_SNP [dm6]	G	A	5.988e^-5	0.929	DOWNSTREAM CG6034 INTRON Ccn
2R	16122527	2R_16122527_SNP [dm3] 2R_20235022_SNP [dm6]	A	T	6.039e^-5	0.929	START_GAINED CG44624 UTR_5_PRIME CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
2R	16122529	2R_16122529_SNP [dm3] 2R_20235024_SNP [dm6]	G	C	6.039e^-5	0.929	UTR_5_PRIME CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
3L	12606423	3L_12606423_INS [dm3] 3L_12613323_INS [dm6]	A	AT	6.099e^-5	0.929	INTRON caup	silencer mE1_HDAC_PRE
3L	17740457	3L_17740457_SNP [dm3] 3L_17747357_SNP [dm6]	G	C	6.110e^-5	0.929	UPSTREAM CG6034 INTRON Ccn
X	18886862	X_18886862_SNP [dm3] X_18992829_SNP [dm6]	T	C	6.129e^-5	0.929	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10249699	3R_10249699_SNP [dm3] 3R_14423977_SNP [dm6]	C	A	6.345e^-5	0.929	INTRON cv-c
2R	12044760	2R_12044760_SNP [dm3] 2R_16157255_SNP [dm6]	A	C	6.356e^-5	0.929	DOWNSTREAM CG10734 INTRON lbk
2L	5849965	2L_5849965_SNP [dm3] 2L_5849965_SNP [dm6]	G	A	6.375e^-5	0.929	INTRON TrissinR
3L	12606235	3L_12606235_SNP [dm3] 3L_12613135_SNP [dm6]	G	A	6.393e^-5	0.929	INTRON caup	silencer mE1_HDAC_PRE
X	18945107	X_18945107_SNP [dm3] X_19051074_SNP [dm6]	A	T	6.503e^-5	0.929	UTR_3_PRIME Diedel3 DOWNSTREAM Diedel3
2L	7390125	2L_7390125_SNP [dm3] 2L_7390125_SNP [dm6]	G	A	6.529e^-5	0.929	SYNONYMOUS_CODING gudu DOWNSTREAM CG5160	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2259386	2L_2259386_SNP [dm3] 2L_2259386_SNP [dm6]	C	T	6.593e^-5	0.929	DOWNSTREAM CR44788 INTERGENIC
2L	2259404	2L_2259404_SNP [dm3] 2L_2259404_SNP [dm6]	T	C	6.593e^-5	0.929	EXON CR44788
2L	2259406	2L_2259406_SNP [dm3] 2L_2259406_SNP [dm6]	C	T	6.593e^-5	0.929	EXON CR44788
2L	2259407	2L_2259407_SNP [dm3] 2L_2259407_SNP [dm6]	T	C	6.593e^-5	0.929	EXON CR44788
2R	8891260	2R_8891260_SNP [dm3] 2R_13003755_SNP [dm6]	C	T	6.593e^-5	0.929	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12605689	3L_12605689_SNP [dm3] 3L_12612589_SNP [dm6]	C	G	6.593e^-5	0.929	INTRON caup
3L	12606083	3L_12606083_SNP [dm3] 3L_12612983_SNP [dm6]	C	T	6.593e^-5	0.929	INTRON caup	silencer mE1_HDAC_PRE
2R	7070095	2R_7070095_SNP [dm3] 2R_11182590_SNP [dm6]	A	G	6.828e^-5	0.929	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18876662	X_18876662_SNP [dm3] X_18982629_SNP [dm6]	G	A	7.039e^-5	0.929	INTRON CG43759
X	18876806	X_18876806_SNP [dm3] X_18982773_SNP [dm6]	T	A	7.039e^-5	0.929	INTRON CG43759
X	18876808	X_18876808_SNP [dm3] X_18982775_SNP [dm6]	C	T	7.039e^-5	0.929	INTRON CG43759
3L	6361188	3L_6361188_SNP [dm3] 3L_6368088_SNP [dm6]	T	C	7.192e^-5	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	18775847	2R_18775847_SNP [dm3] 2R_22888324_SNP [dm6]	T	G	7.366e^-5	0.929	SYNONYMOUS_CODING Gmer UPSTREAM MED23 DOWNSTREAM asrij	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	8082053	X_8082053_SNP [dm3] X_8188020_SNP [dm6]	C	T	7.446e^-5	0.929	INTRON sdt
2R	19518925	2R_19518925_SNP [dm3] 2R_23631402_SNP [dm6]	A	G	7.476e^-5	0.929	INTERGENIC	silencer mE1_HDAC_PRE
2L	8324558	2L_8324558_INS [dm3] 2L_8324558_INS [dm6]	C	CTCCTGCT	7.568e^-5	0.929	INTRON CG7781
3L	17739865	3L_17739865_SNP [dm3] 3L_17746765_SNP [dm6]	C	T	7.620e^-5	0.929	SYNONYMOUS_CODING CG6034 INTRON Ccn
3L	6649799	3L_6649799_SNP [dm3] 3L_6656699_SNP [dm6]	T	C	7.643e^-5	0.929	INTERGENIC
3L	3145251	3L_3145251_SNP [dm3] 3L_3145251_SNP [dm6]	T	C	7.778e^-5	0.929	SYNONYMOUS_CODING CG1291 DOWNSTREAM CG12082	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7160096	2R_7160096_SNP [dm3] 2R_11272591_SNP [dm6]	A	G	7.789e^-5	0.929	UPSTREAM Cpr47Ef INTERGENIC	TF binding site mE1_TFBS_cad
3L	12605508	3L_12605508_SNP [dm3] 3L_12612408_SNP [dm6]	T	C	7.805e^-5	0.929	INTRON caup
3L	17744152	3L_17744152_SNP [dm3] 3L_17751052_SNP [dm6]	T	A	7.895e^-5	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744158	3L_17744158_SNP [dm3] 3L_17751058_SNP [dm6]	G	C	7.895e^-5	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744163	3L_17744163_SNP [dm3] 3L_17751063_SNP [dm6]	C	T	7.895e^-5	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744164	3L_17744164_SNP [dm3] 3L_17751064_SNP [dm6]	C	T	7.895e^-5	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744170	3L_17744170_SNP [dm3] 3L_17751070_SNP [dm6]	A	T	7.895e^-5	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744173	3L_17744173_SNP [dm3] 3L_17751073_SNP [dm6]	A	G	7.895e^-5	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744175	3L_17744175_SNP [dm3] 3L_17751075_SNP [dm6]	T	A	7.895e^-5	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744179	3L_17744179_MNP [dm3] 3L_17751079_MNP [dm6]	GAA	TTC	7.895e^-5	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744188	3L_17744188_SNP [dm3] 3L_17751088_SNP [dm6]	T	C	7.895e^-5	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744189	3L_17744189_SNP [dm3] 3L_17751089_SNP [dm6]	A	T	7.895e^-5	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
X	16234624	X_16234624_SNP [dm3] X_16340591_SNP [dm6]	G	C	7.909e^-5	0.929	UTR_3_PRIME Dsp1 DOWNSTREAM Dsp1
2L	13030083	2L_13030083_SNP [dm3] 2L_13030083_SNP [dm6]	T	C	7.911e^-5	0.929	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13060154	2R_13060154_SNP [dm3] 2R_17172649_SNP [dm6]	T	A	8.261e^-5	0.929	INTERGENIC
3L	5649597	3L_5649597_SNP [dm3] 3L_5656497_SNP [dm6]	A	G	8.404e^-5	0.929	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5649600	3L_5649600_SNP [dm3] 3L_5656500_SNP [dm6]	G	A	8.404e^-5	0.929	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9901605	2R_9901605_SNP [dm3] 2R_14014100_SNP [dm6]	A	T	8.463e^-5	0.929	INTRON mam
2L	16082151	2L_16082151_SNP [dm3] 2L_16082151_SNP [dm6]	G	A	8.469e^-5	0.929	DOWNSTREAM beat-Ia INTERGENIC
2L	4141699	2L_4141699_SNP [dm3] 2L_4141699_SNP [dm6]	A	G	8.484e^-5	0.929	INTERGENIC
3L	2920501	3L_2920501_SNP [dm3] 3L_2920501_SNP [dm6]	G	A	8.517e^-5	0.929	INTRON Shab
2L	5248343	2L_5248343_SNP [dm3] 2L_5248343_SNP [dm6]	A	C	8.857e^-5	0.929	INTRON tkv
2L	5248349	2L_5248349_SNP [dm3] 2L_5248349_SNP [dm6]	G	A	8.857e^-5	0.929	INTRON tkv
3L	2920465	3L_2920465_INS [dm3] 3L_2920465_INS [dm6]	C	CTATGTATTTGTATTATTC...	9.207e^-5	0.929	INTRON Shab
3L	2920472	3L_2920472_SNP [dm3] 3L_2920472_SNP [dm6]	A	G	9.207e^-5	0.929	INTRON Shab
3L	17934912	3L_17934912_SNP [dm3] 3L_17941812_SNP [dm6]	T	C	9.263e^-5	0.929	INTRON CG43174
2R	8888926	2R_8888926_SNP [dm3] 2R_13001421_SNP [dm6]	G	A	9.321e^-5	0.929	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8888932	2R_8888932_SNP [dm3] 2R_13001427_SNP [dm6]	G	A	9.321e^-5	0.929	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17709429	3L_17709429_SNP [dm3] 3L_17716329_SNP [dm6]	C	T	9.345e^-5	0.929	INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9273151	X_9273151_SNP [dm3] X_9379118_SNP [dm6]	G	C	9.375e^-5	0.929	INTRON mgl
X	9273193	X_9273193_SNP [dm3] X_9379160_SNP [dm6]	T	A	9.375e^-5	0.929	INTRON mgl
3R	26456440	3R_26456440_DEL [dm3] 3R_30630718_DEL [dm6]	ACTA	A	9.386e^-5	0.929	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4056711	3L_4056711_SNP [dm3] 3L_4056711_SNP [dm6]	T	G	9.440e^-5	0.929	INTRON CG1136	TF binding site mE1_TFBS_cad
3R	18004542	3R_18004542_DEL [dm3] 3R_22178820_DEL [dm6]	TT	T	9.487e^-5	0.929	INTRON SKIP
3R	18004547	3R_18004547_SNP [dm3] 3R_22178825_SNP [dm6]	G	T	9.487e^-5	0.929	INTRON SKIP
2L	21911534	2L_21911534_SNP [dm3] 2L_21911534_SNP [dm6]	A	G	9.527e^-5	0.929	INTERGENIC
3R	24415816	3R_24415816_SNP [dm3] 3R_28590094_SNP [dm6]	G	A	9.609e^-5	0.929	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	8439875	2R_8439875_DEL [dm3] 2R_12552370_DEL [dm6]	CCC	A	9.648e^-5	0.929	INTRON fra
2L	17098619	2L_17098619_SNP [dm3] 2L_17098619_SNP [dm6]	A	G	9.721e^-5	0.929	INTERGENIC
3L	17740063	3L_17740063_SNP [dm3] 3L_17746963_SNP [dm6]	C	T	9.847e^-5	0.929	UPSTREAM CG6034 INTRON Ccn
2R	16693918	2R_16693918_SNP [dm3] 2R_20806413_SNP [dm6]	T	A	9.850e^-5	0.929	INTERGENIC
3L	5649567	3L_5649567_SNP [dm3] 3L_5656467_SNP [dm6]	C	T	9.929e^-5	0.929	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	16164394	X_16164394_SNP [dm3] X_16270361_SNP [dm6]	A	G	1.009e^-4	0.929	SYNONYMOUS_CODING kat80 UPSTREAM Mfe2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	5362649	X_5362649_SNP [dm3] X_5468616_SNP [dm6]	A	G	1.010e^-4	0.929	INTRON SPR
3R	5602156	3R_5602156_SNP [dm3] 3R_9776434_SNP [dm6]	T	C	1.013e^-4	0.929	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6093230	X_6093230_SNP [dm3] X_6199197_SNP [dm6]	A	T	1.038e^-4	0.929	UPSTREAM CG32751 DOWNSTREAM CG43090 & 1 other INTERGENIC
3L	17934864	3L_17934864_SNP [dm3] 3L_17941764_SNP [dm6]	G	T	1.048e^-4	0.929	INTRON CG43174	TF binding site mE1_TFBS_HSA
3L	18942876	3L_18942876_SNP [dm3] 3L_18949776_SNP [dm6]	G	A	1.067e^-4	0.929	UPSTREAM CG6836 INTERGENIC
2L	19945263	2L_19945263_SNP [dm3] 2L_19945263_SNP [dm6]	G	T	1.077e^-4	0.929	SPLICE_SITE_REGION sick UTR_5_PRIME sick INTRON sick
2R	8608231	2R_8608231_SNP [dm3] 2R_12720726_SNP [dm6]	A	G	1.095e^-4	0.929	INTRON CG42663
2L	5395561	2L_5395561_SNP [dm3] 2L_5395561_SNP [dm6]	C	T	1.110e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5649582	3L_5649582_SNP [dm3] 3L_5656482_SNP [dm6]	C	A	1.111e^-4	0.929	INTRON lin-28	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7629387	3L_7629387_SNP [dm3] 3L_7636287_SNP [dm6]	G	A	1.154e^-4	0.929	SYNONYMOUS_CODING CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9968626	2L_9968626_INS [dm3] 2L_9968626_INS [dm6]	A	AA	1.159e^-4	0.929	UTR_3_PRIME RpL13 DOWNSTREAM RpL13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18004558	3R_18004558_SNP [dm3] 3R_22178836_SNP [dm6]	C	G	1.159e^-4	0.929	INTRON SKIP
3L	8639214	3L_8639214_SNP [dm3] 3L_8646114_SNP [dm6]	A	C	1.164e^-4	0.929	SPLICE_SITE_DONOR CG13305 SYNONYMOUS_CODING CG13305 INTRON CG13305	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10249164	3R_10249164_SNP [dm3] 3R_14423442_SNP [dm6]	T	G	1.167e^-4	0.929	UPSTREAM CR44176 INTRON cv-c
2R	13060152	2R_13060152_SNP [dm3] 2R_17172647_SNP [dm6]	C	T	1.186e^-4	0.929	INTERGENIC
X	12838031	X_12838031_SNP [dm3] X_12943998_SNP [dm6]	A	T	1.186e^-4	0.929	INTRON fne
3L	3814085	3L_3814085_SNP [dm3] 3L_3814085_SNP [dm6]	G	T	1.209e^-4	0.929	UPSTREAM Scsalpha DOWNSTREAM CR43932 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	3814115	3L_3814115_SNP [dm3] 3L_3814115_SNP [dm6]	T	C	1.209e^-4	0.929	UPSTREAM Scsalpha DOWNSTREAM CR43932 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	17737778	3L_17737778_SNP [dm3] 3L_17744678_SNP [dm6]	A	G	1.213e^-4	0.929	DOWNSTREAM CG6034 INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2R	10526302	2R_10526302_SNP [dm3] 2R_14638797_SNP [dm6]	C	T	1.214e^-4	0.929	UTR_3_PRIME CG43236 UPSTREAM CG42715 DOWNSTREAM CG43236	TF binding site mE1_TFBS_inv
3L	17739432	3L_17739432_SNP [dm3] 3L_17746332_SNP [dm6]	G	T	1.214e^-4	0.929	NON_SYNONYMOUS_CODING CG6034 INTRON Ccn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17939479	3L_17939479_SNP [dm3] 3L_17946379_SNP [dm6]	A	G	1.237e^-4	0.929	DOWNSTREAM CG43174 & 1 other INTERGENIC
3R	5104206	3R_5104206_SNP [dm3] 3R_9278484_SNP [dm6]	C	T	1.250e^-4	0.929	INTERGENIC
3R	27018881	3R_27018881_SNP [dm3] 3R_31193159_SNP [dm6]	T	A	1.277e^-4	0.929	UPSTREAM bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8326044	2L_8326044_SNP [dm3] 2L_8326044_SNP [dm6]	C	T	1.286e^-4	0.929	UPSTREAM CG7781 INTERGENIC
X	8081999	X_8081999_SNP [dm3] X_8187966_SNP [dm6]	G	A	1.304e^-4	0.929	INTRON sdt	TF binding site BDTNP1_TFBS_dl
X	6276884	X_6276884_SNP [dm3] X_6382851_SNP [dm6]	C	T	1.331e^-4	0.929	INTERGENIC
2R	5694971	2R_5694971_SNP [dm3] 2R_9807466_SNP [dm6]	T	G	1.335e^-4	0.929	UPSTREAM CG1688 INTERGENIC	TF binding site mE1_TFBS_inv
3R	26580256	3R_26580256_DEL [dm3] 3R_30754534_DEL [dm6]	ACTTGGCTTACTTCGGTTCG...	A	1.349e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	15967419	3R_15967419_SNP [dm3] 3R_20141697_SNP [dm6]	C	A	1.356e^-4	0.929	INTERGENIC
2R	5085362	2R_5085362_SNP [dm3] 2R_9197857_SNP [dm6]	G	A	1.376e^-4	0.929	INTRON unpg
2L	19951639	2L_19951639_SNP [dm3] 2L_19951639_SNP [dm6]	G	C	1.377e^-4	0.929	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16234702	X_16234702_SNP [dm3] X_16340669_SNP [dm6]	T	G	1.397e^-4	0.929	DOWNSTREAM Dsp1 INTERGENIC
3L	17744182	3L_17744182_DEL [dm3] 3L_17751082_DEL [dm6]	AAA	A	1.399e^-4	0.929	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
X	11661375	X_11661375_SNP [dm3] X_11767342_SNP [dm6]	C	G	1.401e^-4	0.929	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
X	8082055	X_8082055_SNP [dm3] X_8188022_SNP [dm6]	T	G	1.406e^-4	0.929	INTRON sdt
X	12441976	X_12441976_SNP [dm3] X_12547943_SNP [dm6]	C	A	1.424e^-4	0.929	UPSTREAM CG43921 INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19930733	2R_19930733_SNP [dm3] 2R_24043210_SNP [dm6]	A	G	1.430e^-4	0.929	SYNONYMOUS_CODING IntS1
2L	13029990	2L_13029990_SNP [dm3] 2L_13029990_SNP [dm6]	C	T	1.432e^-4	0.929	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18533098	2R_18533098_SNP [dm3] 2R_22645593_SNP [dm6]	T	A	1.437e^-4	0.929	INTRON CG2852	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	16665679	2L_16665679_SNP [dm3] 2L_16665679_SNP [dm6]	G	T	1.439e^-4	0.929	INTRON Trpgamma	transposable element FlyBase
X	11657056	X_11657056_DEL [dm3] X_11763023_DEL [dm6]	TTAC	T	1.442e^-4	0.929	DOWNSTREAM CG9360 INTRON m
3L	5649605	3L_5649605_INS [dm3] 3L_5656505_INS [dm6]	G	GTCAG	1.448e^-4	0.929	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5649620	3L_5649620_MNP [dm3] 3L_5656520_MNP [dm6]	CGA	TAT	1.448e^-4	0.929	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5649626	3L_5649626_SNP [dm3] 3L_5656526_SNP [dm6]	A	C	1.448e^-4	0.929	INTRON lin-28	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	20153373	3L_20153373_SNP [dm3] 3L_20160273_SNP [dm6]	G	A	1.458e^-4	0.929	INTRON CG42674
3R	25278360	3R_25278360_SNP [dm3] 3R_29452638_SNP [dm6]	A	G	1.465e^-4	0.929	INTRON Ptp99A	TF binding site mE1_TFBS_chinmo
X	6387981	X_6387981_SNP [dm3] X_6493948_SNP [dm6]	C	A	1.494e^-4	0.929	INTRON CG42340
2L	17529464	2L_17529464_SNP [dm3] 2L_17529464_SNP [dm6]	T	A	1.508e^-4	0.929	UTR_3_PRIME CG15145 UPSTREAM CG15144
X	6455531	X_6455531_SNP [dm3] X_6561498_SNP [dm6]	G	A	1.517e^-4	0.929	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_sens
3R	9896509	3R_9896509_SNP [dm3] 3R_14070787_SNP [dm6]	C	T	1.520e^-4	0.929	INTRON foxo
3L	17040374	3L_17040374_SNP [dm3] 3L_17047274_SNP [dm6]	C	G	1.544e^-4	0.929	INTRON TpnC73F
3L	15707863	3L_15707863_SNP [dm3] 3L_15714763_SNP [dm6]	C	T	1.560e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15707892	3L_15707892_SNP [dm3] 3L_15714792_SNP [dm6]	A	G	1.560e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15707918	3L_15707918_INS [dm3] 3L_15714818_INS [dm6]	A	AA	1.560e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3794513	X_3794513_SNP [dm3] X_3900480_SNP [dm6]	G	A	1.560e^-4	0.929	INTRON CG42541
2R	8608240	2R_8608240_SNP [dm3] 2R_12720735_SNP [dm6]	C	A	1.576e^-4	0.929	INTRON CG42663
2R	19518921	2R_19518921_SNP [dm3] 2R_23631398_SNP [dm6]	T	C	1.590e^-4	0.929	INTERGENIC	silencer mE1_HDAC_PRE
2R	16122981	2R_16122981_SNP [dm3] 2R_20235476_SNP [dm6]	G	A	1.612e^-4	0.929	UPSTREAM CG44625 & 1 other DOWNSTREAM CG11044 & 1 other INTERGENIC
2R	14903618	2R_14903618_SNP [dm3] 2R_19016113_SNP [dm6]	C	G	1.618e^-4	0.929	INTERGENIC
3R	13678351	3R_13678351_SNP [dm3] 3R_17852629_SNP [dm6]	A	C	1.628e^-4	0.929	NON_SYNONYMOUS_CODING tinc
2R	4508454	2R_4508454_SNP [dm3] 2R_8620949_SNP [dm6]	G	A	1.637e^-4	0.929	NON_SYNONYMOUS_CODING Cirl DOWNSTREAM Cirl	TF binding site mE1_TFBS_cad
2L	18389224	2L_18389224_SNP [dm3] 2L_18389224_SNP [dm6]	A	G	1.642e^-4	0.929	UTR_3_PRIME Fas3 INTRON Fas3
3R	5151102	3R_5151102_SNP [dm3] 3R_9325380_SNP [dm6]	G	A	1.653e^-4	0.929	INTRON CG8861
3L	12605968	3L_12605968_SNP [dm3] 3L_12612868_SNP [dm6]	C	G	1.661e^-4	0.929	INTRON caup
2R	15030371	2R_15030371_SNP [dm3] 2R_19142866_SNP [dm6]	G	A	1.667e^-4	0.929	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14084423	3L_14084423_SNP [dm3] 3L_14091323_SNP [dm6]	G	C	1.685e^-4	0.929	INTERGENIC
3L	3446459	3L_3446459_SNP [dm3] 3L_3446459_SNP [dm6]	G	A	1.686e^-4	0.929	INTRON eIF5B
3L	3446425	3L_3446425_SNP [dm3] 3L_3446425_SNP [dm6]	G	A	1.692e^-4	0.929	INTRON eIF5B
2L	8323937	2L_8323937_SNP [dm3] 2L_8323937_SNP [dm6]	A	G	1.692e^-4	0.929	INTRON CG7781
3R	18658172	3R_18658172_SNP [dm3] 3R_22832450_SNP [dm6]	A	T	1.695e^-4	0.929	INTERGENIC
X	21907317	X_21907317_SNP [dm3] X_22505481_SNP [dm6]	A	G	1.713e^-4	0.929	INTRON l_1_G0196	TF binding site mE1_TFBS_chinmo
X	5379355	X_5379355_SNP [dm3] X_5485322_SNP [dm6]	T	C	1.738e^-4	0.929	INTRON SPR
2R	16093251	2R_16093251_SNP [dm3] 2R_20205746_SNP [dm6]	G	A	1.738e^-4	0.929	INTERGENIC
2R	16093261	2R_16093261_SNP [dm3] 2R_20205756_SNP [dm6]	G	A	1.738e^-4	0.929	INTERGENIC
2R	16093268	2R_16093268_SNP [dm3] 2R_20205763_SNP [dm6]	G	T	1.738e^-4	0.929	INTERGENIC
2R	16093269	2R_16093269_SNP [dm3] 2R_20205764_SNP [dm6]	C	A	1.738e^-4	0.929	INTERGENIC
3L	15486024	3L_15486024_SNP [dm3] 3L_15492924_SNP [dm6]	G	C	1.741e^-4	0.929	DOWNSTREAM CG12355 INTERGENIC
3L	18359463	3L_18359463_SNP [dm3] 3L_18366363_SNP [dm6]	T	C	1.753e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	10620163	X_10620163_DEL [dm3] X_10726130_DEL [dm6]	AA	A	1.796e^-4	0.929	INTRON CG32676
2L	19945265	2L_19945265_SNP [dm3] 2L_19945265_SNP [dm6]	T	C	1.799e^-4	0.929	SPLICE_SITE_REGION sick UTR_5_PRIME sick INTRON sick
2R	19518941	2R_19518941_SNP [dm3] 2R_23631418_SNP [dm6]	T	G	1.830e^-4	0.929	INTERGENIC	silencer mE1_HDAC_PRE
2R	8649145	2R_8649145_SNP [dm3] 2R_12761640_SNP [dm6]	C	T	1.835e^-4	0.929	UPSTREAM Nacalpha & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	8081993	X_8081993_INS [dm3] X_8187960_INS [dm6]	T	TA	1.838e^-4	0.929	INTRON sdt	TF binding site BDTNP1_TFBS_dl
3R	10947929	3R_10947929_SNP [dm3] 3R_15122207_SNP [dm6]	G	A	1.852e^-4	0.929	INTRON CG42788
X	6455411	X_6455411_SNP [dm3] X_6561378_SNP [dm6]	A	G	1.878e^-4	0.929	SYNONYMOUS_CODING CG34417
2R	15321616	2R_15321616_SNP [dm3] 2R_19434111_SNP [dm6]	A	G	1.899e^-4	0.929	SPLICE_SITE_REGION Fak INTRON Fak
2R	15321635	2R_15321635_SNP [dm3] 2R_19434130_SNP [dm6]	C	A	1.899e^-4	0.929	INTRON Fak
2R	15321639	2R_15321639_DEL [dm3] 2R_19434134_DEL [dm6]	GTT	A	1.899e^-4	0.929	INTRON Fak
3L	3439389	3L_3439389_SNP [dm3] 3L_3439389_SNP [dm6]	C	T	1.908e^-4	0.929	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	18966912	2R_18966912_SNP [dm3] 2R_23079389_SNP [dm6]	T	C	1.932e^-4	0.929	UTR_3_PRIME CG43659 UPSTREAM Art7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2R	18966914	2R_18966914_DEL [dm3] 2R_23079391_DEL [dm6]	TGATA	T	1.932e^-4	0.929	UTR_3_PRIME CG43659 UPSTREAM Art7	TF binding site BDTNP1_TFBS_dl
2R	18966921	2R_18966921_INS [dm3] 2R_23079398_INS [dm6]	T	TATACATCTTATTC...	1.932e^-4	0.929	UTR_3_PRIME CG43659 UPSTREAM Art7	TF binding site BDTNP1_TFBS_dl
3L	12606076	3L_12606076_SNP [dm3] 3L_12612976_SNP [dm6]	G	A	1.932e^-4	0.929	INTRON caup	silencer mE1_HDAC_PRE
2R	5811995	2R_5811995_SNP [dm3] 2R_9924490_SNP [dm6]	G	T	1.943e^-4	0.929	INTRON Mef2
2R	11911394	2R_11911394_SNP [dm3] 2R_16023889_SNP [dm6]	G	T	1.945e^-4	0.929	DOWNSTREAM casp INTRON CG8399
3R	10249137	3R_10249137_SNP [dm3] 3R_14423415_SNP [dm6]	A	C	1.947e^-4	0.929	UPSTREAM CR44176 INTRON cv-c
2R	18126997	2R_18126997_DEL [dm3] 2R_22239492_DEL [dm6]	AA	C	1.948e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16121027	2R_16121027_SNP [dm3] 2R_20233522_SNP [dm6]	G	T	1.958e^-4	0.929	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2R	16121033	2R_16121033_SNP [dm3] 2R_20233528_SNP [dm6]	C	T	1.958e^-4	0.929	DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2R	16121034	2R_16121034_SNP [dm3] 2R_20233529_SNP [dm6]	T	A	1.958e^-4	0.929	SPLICE_SITE_REGION CG11044 DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
2R	16121036	2R_16121036_SNP [dm3] 2R_20233531_SNP [dm6]	C	T	1.958e^-4	0.929	SPLICE_SITE_REGION CG11044 DOWNSTREAM tRNA:G3:56EFb INTRON CG11044
X	6455185	X_6455185_SNP [dm3] X_6561152_SNP [dm6]	G	C	1.975e^-4	0.929	NON_SYNONYMOUS_CODING CG34417
3L	16282340	3L_16282340_SNP [dm3] 3L_16289240_SNP [dm6]	T	G	1.987e^-4	0.929	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
X	2657950	X_2657950_SNP [dm3] X_2763917_SNP [dm6]	C	A	1.998e^-4	0.929	INTRON kirre
X	2657959	X_2657959_SNP [dm3] X_2763926_SNP [dm6]	T	G	1.998e^-4	0.929	INTRON kirre
3R	18414722	3R_18414722_SNP [dm3] 3R_22589000_SNP [dm6]	T	G	1.999e^-4	0.929	INTRON Efa6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27199348	3R_27199348_SNP [dm3] 3R_31373626_SNP [dm6]	G	T	2.000e^-4	0.929	SYNONYMOUS_CODING gskt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4141441	3L_4141441_SNP [dm3] 3L_4141441_SNP [dm6]	T	G	2.025e^-4	0.929	UPSTREAM Akh & 1 other DOWNSTREAM Ras64B INTERGENIC
2L	4319474	2L_4319474_SNP [dm3] 2L_4319474_SNP [dm6]	C	A	2.027e^-4	0.929	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl DOWNSTREAM tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17740236	3L_17740236_SNP [dm3] 3L_17747136_SNP [dm6]	A	T	2.054e^-4	0.929	UPSTREAM CG6034 INTRON Ccn
X	16726433	X_16726433_INS [dm3] X_16832400_INS [dm6]	C	CAC	2.078e^-4	0.929	INTRON CG13004	TF binding site BDTNP1_TFBS_twi
3L	9912603	3L_9912603_INS [dm3] 3L_9919503_INS [dm6]	T	TA	2.090e^-4	0.929	INTRON CG34356
2L	4239145	2L_4239145_SNP [dm3] 2L_4239145_SNP [dm6]	A	T	2.113e^-4	0.929	DOWNSTREAM CR45720 INTERGENIC
3R	5104352	3R_5104352_SNP [dm3] 3R_9278630_SNP [dm6]	C	A	2.122e^-4	0.929	INTERGENIC
3L	17740216	3L_17740216_DEL [dm3] 3L_17747116_DEL [dm6]	TA	T	2.124e^-4	0.929	UPSTREAM CG6034 INTRON Ccn
3L	17740221	3L_17740221_SNP [dm3] 3L_17747121_SNP [dm6]	G	C	2.124e^-4	0.929	UPSTREAM CG6034 INTRON Ccn
2L	10991686	2L_10991686_SNP [dm3] 2L_10991686_SNP [dm6]	G	A	2.145e^-4	0.929	SYNONYMOUS_CODING CG16833
2R	11911376	2R_11911376_SNP [dm3] 2R_16023871_SNP [dm6]	A	G	2.158e^-4	0.929	DOWNSTREAM casp INTRON CG8399
2R	19902815	2R_19902815_SNP [dm3] 2R_24015292_SNP [dm6]	A	T	2.172e^-4	0.929	INTRON CG4324	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5375073	X_5375073_SNP [dm3] X_5481040_SNP [dm6]	T	A	2.189e^-4	0.929	INTRON SPR
2L	17417681	2L_17417681_SNP [dm3] 2L_17417681_SNP [dm6]	T	C	2.195e^-4	0.929	INTRON Dif
3R	25227650	3R_25227650_SNP [dm3] 3R_29401928_SNP [dm6]	C	T	2.207e^-4	0.929	INTRON Ptp99A
X	3012029	X_3012029_SNP [dm3] X_3117996_SNP [dm6]	C	T	2.208e^-4	0.929	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18942802	3L_18942802_SNP [dm3] 3L_18949702_SNP [dm6]	C	T	2.208e^-4	0.929	UPSTREAM CG6836 INTERGENIC
X	18626347	X_18626347_SNP [dm3] X_18732314_SNP [dm6]	C	T	2.215e^-4	0.929	UPSTREAM CR45513 INTERGENIC
3L	16281700	3L_16281700_DEL [dm3] 3L_16288600_DEL [dm6]	TT	T	2.218e^-4	0.929	UPSTREAM CG13046 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9909345	3L_9909345_SNP [dm3] 3L_9916245_SNP [dm6]	C	T	2.230e^-4	0.929	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	19106517	3L_19106517_DEL [dm3] 3L_19113417_DEL [dm6]	AACAAATGAGTCTCTCT...	A	2.236e^-4	0.929	INTRON CG14082	TF binding site mE1_TFBS_inv
2L	3828693	2L_3828693_SNP [dm3] 2L_3828693_SNP [dm6]	T	G	2.236e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16282377	3L_16282377_SNP [dm3] 3L_16289277_SNP [dm6]	T	A	2.241e^-4	0.929	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
3L	6372137	3L_6372137_SNP [dm3] 3L_6379037_SNP [dm6]	T	A	2.265e^-4	0.929	INTERGENIC
3L	14341964	3L_14341964_SNP [dm3] 3L_14348864_SNP [dm6]	A	G	2.273e^-4	0.929	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21903678	2L_21903678_SNP [dm3] 2L_21903678_SNP [dm6]	C	T	2.283e^-4	0.929	NON_SYNONYMOUS_CODING CG1421
3L	17934858	3L_17934858_SNP [dm3] 3L_17941758_SNP [dm6]	G	T	2.285e^-4	0.929	INTRON CG43174	TF binding site mE1_TFBS_HSA
X	11657189	X_11657189_SNP [dm3] X_11763156_SNP [dm6]	A	G	2.291e^-4	0.929	DOWNSTREAM CG9360 INTRON m
3R	5602103	3R_5602103_SNP [dm3] 3R_9776381_SNP [dm6]	A	G	2.291e^-4	0.929	NON_SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3437963	3L_3437963_SNP [dm3] 3L_3437963_SNP [dm6]	C	T	2.294e^-4	0.929	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14295038	X_14295038_SNP [dm3] X_14401005_SNP [dm6]	C	T	2.315e^-4	0.929	INTRON dpr8
2L	15473943	2L_15473943_SNP [dm3] 2L_15473943_SNP [dm6]	A	C	2.332e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs
2R	12399641	2R_12399641_SNP [dm3] 2R_16512136_SNP [dm6]	G	C	2.336e^-4	0.929	INTRON Sema-2a
2L	17417699	2L_17417699_SNP [dm3] 2L_17417699_SNP [dm6]	T	C	2.337e^-4	0.929	INTRON Dif
X	6280552	X_6280552_SNP [dm3] X_6386519_SNP [dm6]	A	C	2.350e^-4	0.929	INTERGENIC
2R	4608021	2R_4608021_SNP [dm3] 2R_8720516_SNP [dm6]	A	T	2.351e^-4	0.929	SYNONYMOUS_CODING CG30357 INTRON CG14767	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11657052	X_11657052_SNP [dm3] X_11763019_SNP [dm6]	T	G	2.369e^-4	0.929	DOWNSTREAM CG9360 INTRON m
3L	17454608	3L_17454608_SNP [dm3] 3L_17461508_SNP [dm6]	C	A	2.370e^-4	0.929	INTERGENIC
3L	22981275	3L_22981275_SNP [dm3] 3L_22988175_SNP [dm6]	G	T	2.395e^-4	0.929	UTR_3_PRIME CG32457	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17393615	3R_17393615_SNP [dm3] 3R_21567893_SNP [dm6]	A	T	2.402e^-4	0.929	INTRON CG15498
2R	15030513	2R_15030513_SNP [dm3] 2R_19143008_SNP [dm6]	T	C	2.415e^-4	0.929	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25326709	3R_25326709_SNP [dm3] 3R_29500987_SNP [dm6]	T	C	2.433e^-4	0.929	SYNONYMOUS_CODING Trc8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8608256	2R_8608256_SNP [dm3] 2R_12720751_SNP [dm6]	A	C	2.454e^-4	0.929	INTRON CG42663
2L	8224245	2L_8224245_SNP [dm3] 2L_8224245_SNP [dm6]	A	C	2.471e^-4	0.929	SYNONYMOUS_CODING Pvr
3R	11511169	3R_11511169_SNP [dm3] 3R_15685447_SNP [dm6]	A	G	2.483e^-4	0.929	INTRON pxb	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	18777900	2R_18777900_SNP [dm3] 2R_22890377_SNP [dm6]	G	A	2.501e^-4	0.929	SPLICE_SITE_REGION MED23 INTRON MED23	TF binding site mE1_TFBS_cad
3L	18648267	3L_18648267_INS [dm3] 3L_18655167_INS [dm6]	T	TT	2.505e^-4	0.929	INTRON MYPT-75D
2L	12407251	2L_12407251_SNP [dm3] 2L_12407251_SNP [dm6]	A	G	2.509e^-4	0.929	SYNONYMOUS_CODING vir-1
2R	11337106	2R_11337106_SNP [dm3] 2R_15449601_SNP [dm6]	C	A	2.515e^-4	0.929	INTRON CG43729
2R	8609244	2R_8609244_SNP [dm3] 2R_12721739_SNP [dm6]	C	G	2.517e^-4	0.929	INTRON CG42663
2R	11441358	2R_11441358_SNP [dm3] 2R_15553853_SNP [dm6]	G	A	2.541e^-4	0.929	INTERGENIC
3R	9909548	3R_9909548_SNP [dm3] 3R_14083826_SNP [dm6]	G	A	2.549e^-4	0.929	INTRON foxo
2L	15473738	2L_15473738_SNP [dm3] 2L_15473738_SNP [dm6]	C	G	2.555e^-4	0.929	INTERGENIC
X	12441797	X_12441797_DEL [dm3] X_12547764_DEL [dm6]	TTC	T	2.555e^-4	0.929	UPSTREAM CG43921 INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10697223	2R_10697223_SNP [dm3] 2R_14809718_SNP [dm6]	T	C	2.558e^-4	0.929	SYNONYMOUS_CODING hui	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23574633	3R_23574633_SNP [dm3] 3R_27748911_SNP [dm6]	G	A	2.560e^-4	0.929	DOWNSTREAM Ets98B INTERGENIC
2L	12143962	2L_12143962_SNP [dm3] 2L_12143962_SNP [dm6]	A	T	2.564e^-4	0.929	INTRON CG31760
2L	4219131	2L_4219131_SNP [dm3] 2L_4219131_SNP [dm6]	C	T	2.577e^-4	0.929	INTRON ft	TF binding site mE1_TFBS_HSA
2L	4219151	2L_4219151_SNP [dm3] 2L_4219151_SNP [dm6]	G	A	2.577e^-4	0.929	INTRON ft	TF binding site mE1_TFBS_HSA
2L	4219158	2L_4219158_SNP [dm3] 2L_4219158_SNP [dm6]	T	C	2.577e^-4	0.929	INTRON ft	TF binding site mE1_TFBS_HSA
3R	24024964	3R_24024964_SNP [dm3] 3R_28199242_SNP [dm6]	G	A	2.587e^-4	0.929	INTRON CG34354
3R	10982508	3R_10982508_SNP [dm3] 3R_15156786_SNP [dm6]	G	A	2.597e^-4	0.929	INTRON Gyc88E
2L	14340967	2L_14340967_SNP [dm3] 2L_14340967_SNP [dm6]	C	A	2.608e^-4	0.929	DOWNSTREAM CG15286 INTRON CG33090
3L	8122502	3L_8122502_SNP [dm3] 3L_8129402_SNP [dm6]	A	T	2.620e^-4	0.929	INTRON CdsA
2L	7011007	2L_7011007_SNP [dm3] 2L_7011007_SNP [dm6]	T	C	2.623e^-4	0.929	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	19614912	3R_19614912_SNP [dm3] 3R_23789190_SNP [dm6]	G	T	2.639e^-4	0.929	INTRON mbc
X	12594011	X_12594011_SNP [dm3] X_12699978_SNP [dm6]	C	G	2.645e^-4	0.929	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5751940	X_5751940_SNP [dm3] X_5857907_SNP [dm6]	A	T	2.649e^-4	0.929	INTERGENIC
3R	15373951	3R_15373951_DEL [dm3] 3R_19548229_DEL [dm6]	TCCATTTCT	T	2.678e^-4	0.929	INTRON Dys
2L	2263805	2L_2263805_SNP [dm3] 2L_2263805_SNP [dm6]	C	T	2.682e^-4	0.929	DOWNSTREAM CG34049 INTRON CG4270
3L	16282346	3L_16282346_SNP [dm3] 3L_16289246_SNP [dm6]	T	C	2.683e^-4	0.929	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
2R	10286749	2R_10286749_SNP [dm3] 2R_14399244_SNP [dm6]	A	G	2.689e^-4	0.929	INTERGENIC
X	16914615	X_16914615_SNP [dm3] X_17020582_SNP [dm6]	C	T	2.690e^-4	0.929	INTRON CG45002
3R	19597042	3R_19597042_SNP [dm3] 3R_23771320_SNP [dm6]	T	C	2.699e^-4	0.929	SYNONYMOUS_CODING tst
3R	10249194	3R_10249194_SNP [dm3] 3R_14423472_SNP [dm6]	G	A	2.726e^-4	0.929	UPSTREAM CR44176 INTRON cv-c
2R	13060142	2R_13060142_SNP [dm3] 2R_17172637_SNP [dm6]	G	T	2.742e^-4	0.929	INTERGENIC
2R	15366000	2R_15366000_SNP [dm3] 2R_19478495_SNP [dm6]	G	C	2.759e^-4	0.929	INTRON par-1
X	2473445	X_2473445_SNP [dm3] X_2579412_SNP [dm6]	T	C	2.789e^-4	0.929	SYNONYMOUS_CODING Vha36-3 DOWNSTREAM Pdfr
X	6455644	X_6455644_SNP [dm3] X_6561611_SNP [dm6]	G	C	2.795e^-4	0.929	INTRON CG34417	TF binding site mE1_TFBS_sens
2L	4102683	2L_4102683_SNP [dm3] 2L_4102683_SNP [dm6]	A	G	2.805e^-4	0.929	INTRON ed
3R	25354373	3R_25354373_SNP [dm3] 3R_29528651_SNP [dm6]	T	A	2.814e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15030324	2R_15030324_SNP [dm3] 2R_19142819_SNP [dm6]	A	G	2.818e^-4	0.929	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15030325	2R_15030325_SNP [dm3] 2R_19142820_SNP [dm6]	G	C	2.818e^-4	0.929	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15030364	2R_15030364_SNP [dm3] 2R_19142859_SNP [dm6]	T	G	2.818e^-4	0.929	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16822683	3L_16822683_SNP [dm3] 3L_16829583_SNP [dm6]	G	A	2.834e^-4	0.929	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14355158	3L_14355158_SNP [dm3] 3L_14362058_SNP [dm6]	G	C	2.835e^-4	0.929	INTRON fz
2R	18774852	2R_18774852_SNP [dm3] 2R_22887329_SNP [dm6]	A	G	2.838e^-4	0.929	SYNONYMOUS_CODING asrij DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	3264891	3L_3264891_SNP [dm3] 3L_3264891_SNP [dm6]	C	T	2.848e^-4	0.929	INTRON ckd
3L	14084389	3L_14084389_SNP [dm3] 3L_14091289_SNP [dm6]	T	G	2.855e^-4	0.929	INTERGENIC
2L	16489457	2L_16489457_SNP [dm3] 2L_16489457_SNP [dm6]	G	C	2.876e^-4	0.929	NON_SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	3125021	2L_3125021_SNP [dm3] 2L_3125021_SNP [dm6]	T	A	2.877e^-4	0.929	INTRON toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11911343	2R_11911343_SNP [dm3] 2R_16023838_SNP [dm6]	A	G	2.880e^-4	0.929	SYNONYMOUS_CODING CG8399 DOWNSTREAM casp
2L	4451422	2L_4451422_SNP [dm3] 2L_4451422_SNP [dm6]	A	T	2.881e^-4	0.929	SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14553556	2R_14553556_SNP [dm3] 2R_18666051_SNP [dm6]	A	T	2.886e^-4	0.929	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3R	16018003	3R_16018003_SNP [dm3] 3R_20192281_SNP [dm6]	C	G	2.890e^-4	0.929	INTERGENIC
2R	2719293	2R_2719293_SNP [dm3] 2R_6831788_SNP [dm6]	C	G	2.890e^-4	0.929	UTR_5_PRIME CG34215 INTRON CG15236
X	13713305	X_13713305_SNP [dm3] X_13819272_SNP [dm6]	T	A	2.891e^-4	0.929	INTRON Clic
3R	15428997	3R_15428997_SNP [dm3] 3R_19603275_SNP [dm6]	T	A	2.900e^-4	0.929	UPSTREAM CG7342 DOWNSTREAM CG7333 INTERGENIC
2R	15321646	2R_15321646_SNP [dm3] 2R_19434141_SNP [dm6]	A	T	2.927e^-4	0.929	INTRON Fak
3L	6365631	3L_6365631_SNP [dm3] 3L_6372531_SNP [dm6]	C	A	2.927e^-4	0.929	INTERGENIC
2R	7069914	2R_7069914_SNP [dm3] 2R_11182409_SNP [dm6]	C	T	2.930e^-4	0.929	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3142986	3L_3142986_SNP [dm3] 3L_3142986_SNP [dm6]	C	T	2.934e^-4	0.929	UTR_5_PRIME CG11537 UPSTREAM CG1291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16901556	3L_16901556_SNP [dm3] 3L_16908456_SNP [dm6]	C	A	2.941e^-4	0.929	INTRON Lmpt
3R	25565661	3R_25565661_SNP [dm3] 3R_29739939_SNP [dm6]	G	T	2.944e^-4	0.929	START_GAINED CG1969 UTR_5_PRIME CG1969 UPSTREAM CG1969	TF binding site BDTNP1_TFBS_dl
2L	6329639	2L_6329639_SNP [dm3] 2L_6329639_SNP [dm6]	A	T	2.949e^-4	0.929	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad
2R	11181117	2R_11181117_SNP [dm3] 2R_15293612_SNP [dm6]	G	A	2.956e^-4	0.929	DOWNSTREAM CR44241 INTRON Trpm	TF binding site BDTNP1_TFBS_twi
X	16914497	X_16914497_SNP [dm3] X_17020464_SNP [dm6]	A	T	2.956e^-4	0.929	INTRON CG45002
2R	10286824	2R_10286824_SNP [dm3] 2R_14399319_SNP [dm6]	C	G	2.979e^-4	0.929	INTERGENIC
3L	10191049	3L_10191049_SNP [dm3] 3L_10197949_SNP [dm6]	A	G	2.980e^-4	0.929	INTRON ect
3R	18523538	3R_18523538_SNP [dm3] 3R_22697816_SNP [dm6]	C	A	2.986e^-4	0.929	NON_SYNONYMOUS_CODING cd UPSTREAM Cyp6d4
3R	1817627	3R_1817627_SNP [dm3] 3R_5991905_SNP [dm6]	G	A	3.044e^-4	0.929	INTERGENIC
3R	17415657	3R_17415657_SNP [dm3] 3R_21589935_SNP [dm6]	G	A	3.056e^-4	0.929	INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	15676596	3R_15676596_SNP [dm3] 3R_19850874_SNP [dm6]	G	C	3.068e^-4	0.929	SYNONYMOUS_CODING CG4662
3R	16018144	3R_16018144_SNP [dm3] 3R_20192422_SNP [dm6]	C	T	3.073e^-4	0.929	INTERGENIC
2R	11541287	2R_11541287_SNP [dm3] 2R_15653782_SNP [dm6]	A	G	3.084e^-4	0.929	INTRON CG42524
3R	17415803	3R_17415803_SNP [dm3] 3R_21590081_SNP [dm6]	C	A	3.088e^-4	0.929	UTR_5_PRIME InR INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18774612	2R_18774612_SNP [dm3] 2R_22887089_SNP [dm6]	C	T	3.091e^-4	0.929	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	4118884	3L_4118884_SNP [dm3] 3L_4118884_SNP [dm6]	A	T	3.097e^-4	0.929	INTRON Chd64
3L	4118885	3L_4118885_SNP [dm3] 3L_4118885_SNP [dm6]	G	A	3.097e^-4	0.929	INTRON Chd64
3L	4118895	3L_4118895_SNP [dm3] 3L_4118895_SNP [dm6]	G	T	3.097e^-4	0.929	INTRON Chd64
3L	4118897	3L_4118897_SNP [dm3] 3L_4118897_SNP [dm6]	T	C	3.097e^-4	0.929	INTRON Chd64
2L	10253470	2L_10253470_SNP [dm3] 2L_10253470_SNP [dm6]	G	A	3.102e^-4	0.929	NON_SYNONYMOUS_CODING Ror
3L	17891927	3L_17891927_SNP [dm3] 3L_17898827_SNP [dm6]	T	C	3.104e^-4	0.929	DOWNSTREAM Prestin INTERGENIC
X	6093337	X_6093337_SNP [dm3] X_6199304_SNP [dm6]	C	T	3.118e^-4	0.929	SYNONYMOUS_CODING CG43090 UPSTREAM CG32751 DOWNSTREAM vanin-like
3L	6260685	3L_6260685_DEL [dm3] 3L_6267585_DEL [dm6]	CTTAGTTCAC	C	3.145e^-4	0.929	INTERGENIC
2L	6509754	2L_6509754_SNP [dm3] 2L_6509754_SNP [dm6]	C	T	3.160e^-4	0.929	INTRON CG31637
X	12441804	X_12441804_SNP [dm3] X_12547771_SNP [dm6]	G	T	3.160e^-4	0.929	UPSTREAM CG43921 INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6161555	2R_6161555_SNP [dm3] 2R_10274050_SNP [dm6]	A	C	3.183e^-4	0.929	INTRON CAP
2R	4472219	2R_4472219_SNP [dm3] 2R_8584714_SNP [dm6]	G	C	3.218e^-4	0.929	UTR_5_PRIME CG42326
2R	19687214	2R_19687214_SNP [dm3] 2R_23799691_SNP [dm6]	A	G	3.219e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10239681	3L_10239681_SNP [dm3] 3L_10246581_SNP [dm6]	C	A	3.229e^-4	0.929	UPSTREAM CR44539 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1
2L	6904286	2L_6904286_SNP [dm3] 2L_6904286_SNP [dm6]	G	A	3.231e^-4	0.929	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6783794	2R_6783794_SNP [dm3] 2R_10896289_SNP [dm6]	A	G	3.251e^-4	0.929	SYNONYMOUS_CODING CG12942 DOWNSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16914538	X_16914538_SNP [dm3] X_17020505_SNP [dm6]	T	A	3.255e^-4	0.929	INTRON CG45002
3R	18164811	3R_18164811_SNP [dm3] 3R_22339089_SNP [dm6]	A	G	3.298e^-4	0.929	INTRON CG5388	TF binding site mE1_TFBS_Trl
X	9228222	X_9228222_SNP [dm3] X_9334189_SNP [dm6]	G	T	3.345e^-4	0.929	INTRON CG34449
3L	3439390	3L_3439390_SNP [dm3] 3L_3439390_SNP [dm6]	A	G	3.347e^-4	0.929	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	7234225	X_7234225_INS [dm3] X_7340192_INS [dm6]	T	TT	3.358e^-4	0.929	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
X	17274700	X_17274700_SNP [dm3] X_17380667_SNP [dm6]	G	T	3.362e^-4	0.929	INTERGENIC
X	17274717	X_17274717_SNP [dm3] X_17380684_SNP [dm6]	T	A	3.362e^-4	0.929	INTERGENIC
3L	9827258	3L_9827258_SNP [dm3] 3L_9834158_SNP [dm6]	A	G	3.364e^-4	0.929	UTR_3_PRIME CG43897 DOWNSTREAM I-2
3L	10686258	3L_10686258_SNP [dm3] 3L_10693158_SNP [dm6]	T	C	3.388e^-4	0.929	UTR_5_PRIME CG33493 DOWNSTREAM CG6463 & 1 other	TF binding site mE1_TFBS_sens
3L	3823252	3L_3823252_SNP [dm3] 3L_3823252_SNP [dm6]	T	A	3.389e^-4	0.929	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19200287	X_19200287_SNP [dm3] X_19306254_SNP [dm6]	A	T	3.395e^-4	0.929	UPSTREAM CG8051 INTRON CG8051
3R	26895239	3R_26895239_SNP [dm3] 3R_31069517_SNP [dm6]	C	T	3.399e^-4	0.929	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3L	6445121	3L_6445121_SNP [dm3] 3L_6452021_SNP [dm6]	G	T	3.400e^-4	0.929	INTRON CG42747
3L	18114523	3L_18114523_SNP [dm3] 3L_18121423_SNP [dm6]	T	A	3.432e^-4	0.929	DOWNSTREAM CG7341 INTRON CG42853
2L	7944958	2L_7944958_SNP [dm3] 2L_7944958_SNP [dm6]	T	C	3.440e^-4	0.929	INTRON Snoo
2R	6161552	2R_6161552_SNP [dm3] 2R_10274047_SNP [dm6]	A	T	3.441e^-4	0.929	INTRON CAP
3L	17147921	3L_17147921_SNP [dm3] 3L_17154821_SNP [dm6]	T	A	3.451e^-4	0.929	INTRON Rbp6	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16435347	2R_16435347_SNP [dm3] 2R_20547842_SNP [dm6]	A	T	3.474e^-4	0.929	NON_SYNONYMOUS_CODING Obp57e UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other
2L	12084553	2L_12084553_SNP [dm3] 2L_12084553_SNP [dm6]	A	G	3.478e^-4	0.929	SYNONYMOUS_CODING prd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12097495	3L_12097495_SNP [dm3] 3L_12104395_SNP [dm6]	T	C	3.487e^-4	0.929	INTERGENIC
2L	17938226	2L_17938226_INS [dm3] 2L_17938226_INS [dm6]	T	TT	3.492e^-4	0.929	DOWNSTREAM CR44399 INTERGENIC
3L	2538135	3L_2538135_SNP [dm3] 3L_2538135_SNP [dm6]	T	C	3.500e^-4	0.929	INTRON Spn
3R	14649759	3R_14649759_DEL [dm3] 3R_18824037_DEL [dm6]	AA	A	3.524e^-4	0.929	INTRON CG18208
3R	14649773	3R_14649773_SNP [dm3] 3R_18824051_SNP [dm6]	C	T	3.524e^-4	0.929	INTRON CG18208
2L	5248347	2L_5248347_SNP [dm3] 2L_5248347_SNP [dm6]	A	G	3.528e^-4	0.929	INTRON tkv
3L	12538691	3L_12538691_INS [dm3] 3L_12545591_INS [dm6]	T	TT	3.530e^-4	0.929	INTRON sowah
X	5532124	X_5532124_DEL [dm3] X_5638091_DEL [dm6]	ATTGTA	A	3.533e^-4	0.929	UPSTREAM CG42492 INTRON CG42492	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	9896146	3R_9896146_SNP [dm3] 3R_14070424_SNP [dm6]	C	T	3.540e^-4	0.929	INTRON foxo
3R	9896175	3R_9896175_INS [dm3] 3R_14070453_INS [dm6]	T	TCT	3.540e^-4	0.929	INTRON foxo
3L	18955978	3L_18955978_SNP [dm3] 3L_18962878_SNP [dm6]	G	A	3.540e^-4	0.929	INTERGENIC
3L	18955976	3L_18955976_SNP [dm3] 3L_18962876_SNP [dm6]	T	C	3.544e^-4	0.929	INTERGENIC
2R	7206103	2R_7206103_SNP [dm3] 2R_11318598_SNP [dm6]	T	A	3.550e^-4	0.929	UTR_5_PRIME nompA UPSTREAM nompA
2L	16414962	2L_16414962_SNP [dm3] 2L_16414962_SNP [dm6]	T	C	3.555e^-4	0.929	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24786908	3R_24786908_SNP [dm3] 3R_28961186_SNP [dm6]	A	T	3.565e^-4	0.929	INTRON CG14521
2R	6174270	2R_6174270_SNP [dm3] 2R_10286765_SNP [dm6]	A	C	3.579e^-4	0.929	DOWNSTREAM CAP INTRON CAP
2R	20203410	2R_20203410_SNP [dm3] 2R_24315887_SNP [dm6]	G	T	3.581e^-4	0.929	INTERGENIC
3L	3446460	3L_3446460_SNP [dm3] 3L_3446460_SNP [dm6]	C	T	3.592e^-4	0.929	INTRON eIF5B
3L	7588851	3L_7588851_SNP [dm3] 3L_7595751_SNP [dm6]	T	A	3.593e^-4	0.929	INTRON CG33275
3L	7588896	3L_7588896_SNP [dm3] 3L_7595796_SNP [dm6]	G	A	3.593e^-4	0.929	INTRON CG33275
3L	7588897	3L_7588897_SNP [dm3] 3L_7595797_SNP [dm6]	G	A	3.593e^-4	0.929	INTRON CG33275
3R	9642285	3R_9642285_SNP [dm3] 3R_13816563_SNP [dm6]	C	G	3.605e^-4	0.929	DOWNSTREAM CR43641 EXON CR43642	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14498191	3L_14498191_SNP [dm3] 3L_14505091_SNP [dm6]	C	T	3.609e^-4	0.929	INTRON bbg
X	17274596	X_17274596_SNP [dm3] X_17380563_SNP [dm6]	G	A	3.613e^-4	0.929	INTERGENIC
3L	16309860	3L_16309860_SNP [dm3] 3L_16316760_SNP [dm6]	T	C	3.619e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15365880	2R_15365880_SNP [dm3] 2R_19478375_SNP [dm6]	T	C	3.623e^-4	0.929	INTRON par-1
3L	18215011	3L_18215011_SNP [dm3] 3L_18221911_SNP [dm6]	C	T	3.630e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6972251	2L_6972251_DEL [dm3] 2L_6972251_DEL [dm6]	CTGGGAGTGC	C	3.662e^-4	0.929	UPSTREAM snRNP-U1-70K DOWNSTREAM uif EXON CR43142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	2263863	2L_2263863_SNP [dm3] 2L_2263863_SNP [dm6]	C	T	3.667e^-4	0.929	SYNONYMOUS_CODING CG4270 DOWNSTREAM CG34049
3L	5152225	3L_5152225_SNP [dm3] 3L_5159125_SNP [dm6]	G	A	3.674e^-4	0.929	UTR_3_PRIME shep
2L	15111484	2L_15111484_INS [dm3] 2L_15111484_INS [dm6]	A	AA	3.686e^-4	0.929	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12751636	3L_12751636_SNP [dm3] 3L_12758536_SNP [dm6]	A	T	3.691e^-4	0.929	INTRON CG32113	TF binding site mE1_TFBS_inv
2R	7069899	2R_7069899_SNP [dm3] 2R_11182394_SNP [dm6]	A	T	3.695e^-4	0.929	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	11993969	2R_11993969_DEL [dm3] 2R_16106464_DEL [dm6]	AAA	A	3.714e^-4	0.929	UTR_3_PRIME Rho1 DOWNSTREAM Ric
3L	17705905	3L_17705905_SNP [dm3] 3L_17712805_SNP [dm6]	T	G	3.728e^-4	0.929	INTRON Ccn
2L	10564038	2L_10564038_SNP [dm3] 2L_10564038_SNP [dm6]	C	T	3.731e^-4	0.929	INTRON Trim9
2R	18957747	2R_18957747_DEL [dm3] 2R_23070224_DEL [dm6]	AAA	A	3.751e^-4	0.929	UPSTREAM l_2_k09913 INTRON l_2_k09913	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4830285	2R_4830285_SNP [dm3] 2R_8942780_SNP [dm6]	G	A	3.753e^-4	0.929	UPSTREAM CR44274 DOWNSTREAM CR44273 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21129194	X_21129194_SNP [dm3] X_21258167_SNP [dm6]	T	A	3.772e^-4	0.929	INTRON CG32521
3L	8531153	3L_8531153_SNP [dm3] 3L_8538053_SNP [dm6]	C	T	3.776e^-4	0.929	DOWNSTREAM ergic53 INTERGENIC
3L	9837062	3L_9837062_SNP [dm3] 3L_9843962_SNP [dm6]	A	G	3.782e^-4	0.929	SYNONYMOUS_CODING RasGAP1	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_HSA mE1_TFBS_sens
X	17273364	X_17273364_SNP [dm3] X_17379331_SNP [dm6]	G	A	3.803e^-4	0.929	UPSTREAM CR43491 INTERGENIC
2R	11848437	2R_11848437_SNP [dm3] 2R_15960932_SNP [dm6]	G	T	3.823e^-4	0.929	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5642999	X_5642999_SNP [dm3] X_5748966_SNP [dm6]	T	C	3.836e^-4	0.929	INTRON CG4078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16122810	2R_16122810_SNP [dm3] 2R_20235305_SNP [dm6]	A	G	3.838e^-4	0.929	UTR_3_PRIME CG44624 UPSTREAM CG44625 & 1 other DOWNSTREAM CG11044
X	21232198	X_21232198_SNP [dm3] X_21361171_SNP [dm6]	C	T	3.839e^-4	0.929	UTR_3_PRIME Sep1
2R	4524616	2R_4524616_SNP [dm3] 2R_8637111_SNP [dm6]	A	G	3.840e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15705670	3L_15705670_SNP [dm3] 3L_15712570_SNP [dm6]	A	C	3.856e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	1809147	3R_1809147_SNP [dm3] 3R_5983425_SNP [dm6]	A	T	3.860e^-4	0.929	INTERGENIC
3R	18004585	3R_18004585_SNP [dm3] 3R_22178863_SNP [dm6]	A	T	3.864e^-4	0.929	INTRON SKIP
2L	9890670	2L_9890670_SNP [dm3] 2L_9890670_SNP [dm6]	A	T	3.865e^-4	0.929	UPSTREAM CG4537 DOWNSTREAM FKBP59 & 1 other INTRON CG34183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	15030643	2R_15030643_SNP [dm3] 2R_19143138_SNP [dm6]	G	A	3.865e^-4	0.929	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	18214947	3L_18214947_SNP [dm3] 3L_18221847_SNP [dm6]	C	T	3.880e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18214951	3L_18214951_SNP [dm3] 3L_18221851_SNP [dm6]	C	A	3.880e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18214954	3L_18214954_INS [dm3] 3L_18221854_INS [dm6]	A	AAGTCAGTG	3.880e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215017	3L_18215017_SNP [dm3] 3L_18221917_SNP [dm6]	A	T	3.880e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215020	3L_18215020_SNP [dm3] 3L_18221920_SNP [dm6]	G	T	3.880e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215026	3L_18215026_SNP [dm3] 3L_18221926_SNP [dm6]	A	C	3.880e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215028	3L_18215028_MNP [dm3] 3L_18221928_MNP [dm6]	ACA	TTT	3.880e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215033	3L_18215033_INS [dm3] 3L_18221933_INS [dm6]	TT	AAGCGCAAA	3.880e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215057	3L_18215057_MNP [dm3] 3L_18221957_MNP [dm6]	TAA	GTG	3.880e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215086	3L_18215086_DEL [dm3] 3L_18221986_DEL [dm6]	TTTTT	AC	3.880e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10017954	3L_10017954_INS [dm3] 3L_10024854_INS [dm6]	C	CCAC	3.900e^-4	0.929	INTRON dpr6
2L	4708804	2L_4708804_SNP [dm3] 2L_4708804_SNP [dm6]	C	T	3.911e^-4	0.929	INTRON CG34351
2L	4708805	2L_4708805_DEL [dm3] 2L_4708805_DEL [dm6]	CCAGTCCGCTT...	C	3.911e^-4	0.929	INTRON CG34351
2R	2084007	2R_2084007_SNP [dm3] 2R_6196502_SNP [dm6]	G	A	3.912e^-4	0.929	UPSTREAM Ptr DOWNSTREAM CG30432 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6904464	2L_6904464_SNP [dm3] 2L_6904464_SNP [dm6]	T	A	3.916e^-4	0.929	SPLICE_SITE_REGION Nlg2 INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6904499	2L_6904499_SNP [dm3] 2L_6904499_SNP [dm6]	A	T	3.916e^-4	0.929	INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10946646	3R_10946646_INS [dm3] 3R_15120924_INS [dm6]	T	TGGT	3.920e^-4	0.929	INTRON CG42788
2L	11533747	2L_11533747_SNP [dm3] 2L_11533747_SNP [dm6]	T	C	3.921e^-4	0.929	UTR_3_PRIME CG34162 INTRON CR42743
3R	19915706	3R_19915706_SNP [dm3] 3R_24089984_SNP [dm6]	G	C	3.924e^-4	0.929	INTRON 4EHP
2R	15878572	2R_15878572_SNP [dm3] 2R_19991067_SNP [dm6]	T	C	3.926e^-4	0.929	INTERGENIC
2L	21859180	2L_21859180_SNP [dm3] 2L_21859180_SNP [dm6]	A	G	3.933e^-4	0.929	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	14904144	2R_14904144_SNP [dm3] 2R_19016639_SNP [dm6]	A	G	3.937e^-4	0.929	INTERGENIC
2L	9412604	2L_9412604_SNP [dm3] 2L_9412604_SNP [dm6]	A	C	3.942e^-4	0.929	INTRON Shawl
2R	4203646	2R_4203646_SNP [dm3] 2R_8316141_SNP [dm6]	C	G	3.947e^-4	0.929	INTERGENIC
3L	17710078	3L_17710078_SNP [dm3] 3L_17716978_SNP [dm6]	G	C	3.970e^-4	0.929	INTRON Ccn
3L	17710080	3L_17710080_SNP [dm3] 3L_17716980_SNP [dm6]	C	G	3.970e^-4	0.929	INTRON Ccn
3R	11476017	3R_11476017_SNP [dm3] 3R_15650295_SNP [dm6]	C	G	3.981e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18761962	2R_18761962_INS [dm3] 2R_22874439_INS [dm6]	G	TT	3.991e^-4	0.929	UPSTREAM PIP5K59B DOWNSTREAM CR45469 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18761970	2R_18761970_SNP [dm3] 2R_22874447_SNP [dm6]	C	T	3.991e^-4	0.929	UPSTREAM PIP5K59B DOWNSTREAM CR45469 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13060192	2R_13060192_SNP [dm3] 2R_17172687_SNP [dm6]	T	A	3.991e^-4	0.929	INTERGENIC
2L	11231277	2L_11231277_SNP [dm3] 2L_11231277_SNP [dm6]	A	G	3.995e^-4	0.929	INTRON ab
3L	8997732	3L_8997732_SNP [dm3] 3L_9004632_SNP [dm6]	T	C	4.000e^-4	0.929	UPSTREAM Doc3 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2585991	2L_2585991_SNP [dm3] 2L_2585991_SNP [dm6]	T	C	4.018e^-4	0.929	UPSTREAM Drp1 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2585992	2L_2585992_SNP [dm3] 2L_2585992_SNP [dm6]	A	C	4.018e^-4	0.929	UPSTREAM Drp1 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14649700	3R_14649700_SNP [dm3] 3R_18823978_SNP [dm6]	A	T	4.020e^-4	0.929	INTRON CG18208
3R	14649728	3R_14649728_SNP [dm3] 3R_18824006_SNP [dm6]	C	G	4.020e^-4	0.929	INTRON CG18208
3R	14649736	3R_14649736_SNP [dm3] 3R_18824014_SNP [dm6]	G	A	4.020e^-4	0.929	INTRON CG18208
3R	14649749	3R_14649749_SNP [dm3] 3R_18824027_SNP [dm6]	A	G	4.020e^-4	0.929	INTRON CG18208
2L	4219331	2L_4219331_SNP [dm3] 2L_4219331_SNP [dm6]	C	G	4.025e^-4	0.929	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8747277	2L_8747277_SNP [dm3] 2L_8747277_SNP [dm6]	G	C	4.029e^-4	0.929	INTERGENIC
X	9128238	X_9128238_SNP [dm3] X_9234205_SNP [dm6]	C	T	4.036e^-4	0.929	SYNONYMOUS_CODING Ir8a	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5936777	2L_5936777_SNP [dm3] 2L_5936777_SNP [dm6]	C	G	4.039e^-4	0.929	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8392719	2R_8392719_SNP [dm3] 2R_12505214_SNP [dm6]	T	G	4.042e^-4	0.929	UPSTREAM fdl INTRON fdl
3L	18457653	3L_18457653_DEL [dm3] 3L_18464553_DEL [dm6]	TTCGTTGCACGTTTTCTATG...	T	4.044e^-4	0.929	INTERGENIC
3L	4118868	3L_4118868_SNP [dm3] 3L_4118868_SNP [dm6]	T	C	4.046e^-4	0.929	INTRON Chd64
X	6455613	X_6455613_SNP [dm3] X_6561580_SNP [dm6]	A	T	4.061e^-4	0.929	INTRON CG34417	TF binding site mE1_TFBS_sens
X	6455879	X_6455879_SNP [dm3] X_6561846_SNP [dm6]	T	C	4.061e^-4	0.929	SYNONYMOUS_CODING CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18929411	3L_18929411_SNP [dm3] 3L_18936311_SNP [dm6]	C	G	4.062e^-4	0.929	INTRON CG32204
2L	4497007	2L_4497007_SNP [dm3] 2L_4497007_SNP [dm6]	G	A	4.073e^-4	0.929	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17671102	X_17671102_SNP [dm3] X_17777069_SNP [dm6]	A	T	4.115e^-4	0.929	INTRON unc-4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18215065	3L_18215065_MNP [dm3] 3L_18221965_MNP [dm6]	TAG	ATT	4.124e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215070	3L_18215070_SNP [dm3] 3L_18221970_SNP [dm6]	A	T	4.124e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215071	3L_18215071_DEL [dm3] 3L_18221971_DEL [dm6]	AGAC	A	4.124e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215079	3L_18215079_SNP [dm3] 3L_18221979_SNP [dm6]	C	T	4.124e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215080	3L_18215080_SNP [dm3] 3L_18221980_SNP [dm6]	A	T	4.124e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18215082	3L_18215082_SNP [dm3] 3L_18221982_SNP [dm6]	A	T	4.124e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11006717	3R_11006717_SNP [dm3] 3R_15180995_SNP [dm6]	G	A	4.134e^-4	0.929	UPSTREAM Mf INTRON Gyc88E & 1 other
2R	18760742	2R_18760742_SNP [dm3] 2R_22873219_SNP [dm6]	C	T	4.134e^-4	0.929	INTRON CG13532	TF binding site mE1_TFBS_chinmo
2R	18760924	2R_18760924_SNP [dm3] 2R_22873401_SNP [dm6]	A	C	4.134e^-4	0.929	INTRON CG13532	TF binding site mE1_TFBS_chinmo
X	10081966	X_10081966_SNP [dm3] X_10187933_SNP [dm6]	C	T	4.141e^-4	0.929	INTRON CR44894 & 1 other
3R	23887395	3R_23887395_SNP [dm3] 3R_28061673_SNP [dm6]	A	G	4.143e^-4	0.929	INTRON CG34362
3R	18522322	3R_18522322_SNP [dm3] 3R_22696600_SNP [dm6]	T	C	4.143e^-4	0.929	SYNONYMOUS_CODING cd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18357129	2R_18357129_SNP [dm3] 2R_22469624_SNP [dm6]	A	G	4.147e^-4	0.929	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26176265	3R_26176265_SNP [dm3] 3R_30350543_SNP [dm6]	C	G	4.167e^-4	0.929	INTRON hdc
3L	7223191	3L_7223191_SNP [dm3] 3L_7230091_SNP [dm6]	G	C	4.207e^-4	0.929	INTERGENIC
2L	11484388	2L_11484388_SNP [dm3] 2L_11484388_SNP [dm6]	C	T	4.208e^-4	0.929	UPSTREAM CG43355 & 1 other INTERGENIC
3R	6015035	3R_6015035_SNP [dm3] 3R_10189313_SNP [dm6]	G	T	4.248e^-4	0.929	INTRON CG12814	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	6015037	3R_6015037_SNP [dm3] 3R_10189315_SNP [dm6]	T	A	4.248e^-4	0.929	INTRON CG12814	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14178347	3L_14178347_SNP [dm3] 3L_14185247_SNP [dm6]	T	G	4.252e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24100345	3R_24100345_SNP [dm3] 3R_28274623_SNP [dm6]	T	C	4.267e^-4	0.929	INTERGENIC
2R	6213142	2R_6213142_SNP [dm3] 2R_10325637_SNP [dm6]	C	A	4.277e^-4	0.929	INTRON CG42732
2L	5885437	2L_5885437_SNP [dm3] 2L_5885437_SNP [dm6]	C	A	4.294e^-4	0.929	UTR_3_PRIME CG43185 UPSTREAM Sfp26Ac & 1 other
2L	4426554	2L_4426554_SNP [dm3] 2L_4426554_SNP [dm6]	T	C	4.305e^-4	0.929	INTRON CG15431
3L	2498915	3L_2498915_SNP [dm3] 3L_2498915_SNP [dm6]	C	T	4.319e^-4	0.929	UTR_3_PRIME CG45186 DOWNSTREAM CG16758	TF binding site BDTNP1_TFBS_dl
3L	1098269	3L_1098269_SNP [dm3] 3L_1098269_SNP [dm6]	A	G	4.335e^-4	0.929	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7715556	3L_7715556_SNP [dm3] 3L_7722456_SNP [dm6]	T	C	4.336e^-4	0.929	SYNONYMOUS_CODING CG7457 DOWNSTREAM CG12262 INTRON CG32373
3R	10950739	3R_10950739_DEL [dm3] 3R_15125017_DEL [dm6]	TT	T	4.345e^-4	0.929	INTRON CG42788
3R	10954860	3R_10954860_DEL [dm3] 3R_15129138_DEL [dm6]	AA	A	4.345e^-4	0.929	INTRON CG42788
3R	10962926	3R_10962926_SNP [dm3] 3R_15137204_SNP [dm6]	C	T	4.345e^-4	0.929	SYNONYMOUS_CODING CG3984 UPSTREAM CG6912 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7957216	2L_7957216_SNP [dm3] 2L_7957216_SNP [dm6]	T	C	4.359e^-4	0.929	INTRON Snoo
2R	12672193	2R_12672193_DEL [dm3] 2R_16784688_DEL [dm6]	CAA	GT	4.364e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20285380	X_20285380_SNP [dm3] X_20414353_SNP [dm6]	A	C	4.394e^-4	0.929	UPSTREAM CG15459 & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	5005595	X_5005595_SNP [dm3] X_5111562_SNP [dm6]	G	A	4.397e^-4	0.929	INTRON rg & 1 other
2L	4305993	2L_4305993_SNP [dm3] 2L_4305993_SNP [dm6]	G	A	4.402e^-4	0.929	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3R	23781609	3R_23781609_SNP [dm3] 3R_27955887_SNP [dm6]	G	A	4.416e^-4	0.929	SYNONYMOUS_CODING CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18567070	3R_18567070_SNP [dm3] 3R_22741348_SNP [dm6]	C	A	4.419e^-4	0.929	NON_SYNONYMOUS_CODING CG6985 UPSTREAM Dcr-1	TF binding site mE1_TFBS_cad
X	16412761	X_16412761_SNP [dm3] X_16518728_SNP [dm6]	G	A	4.451e^-4	0.929	INTRON para
3L	22981254	3L_22981254_SNP [dm3] 3L_22988154_SNP [dm6]	T	G	4.465e^-4	0.929	NON_SYNONYMOUS_CODING CG32457	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	22981290	3L_22981290_SNP [dm3] 3L_22988190_SNP [dm6]	A	G	4.465e^-4	0.929	UTR_3_PRIME CG32457	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1609106	3L_1609106_SNP [dm3] 3L_1609106_SNP [dm6]	G	C	4.466e^-4	0.929	INTRON CG33791 & 1 other
3R	24088297	3R_24088297_DEL [dm3] 3R_28262575_DEL [dm6]	TTCGGGG	T	4.466e^-4	0.929	DOWNSTREAM CG43125 INTERGENIC
X	5969915	X_5969915_SNP [dm3] X_6075882_SNP [dm6]	C	G	4.481e^-4	0.929	DOWNSTREAM CG4666 INTERGENIC
2R	18777912	2R_18777912_SNP [dm3] 2R_22890389_SNP [dm6]	C	T	4.485e^-4	0.929	INTRON MED23	TF binding site mE1_TFBS_cad
2R	18325632	2R_18325632_SNP [dm3] 2R_22438127_SNP [dm6]	T	A	4.488e^-4	0.929	INTERGENIC
2R	2712441	2R_2712441_SNP [dm3] 2R_6824936_SNP [dm6]	T	A	4.501e^-4	0.929	INTERGENIC
X	2478302	X_2478302_INS [dm3] X_2584269_INS [dm6]	T	TATTCATCT	4.507e^-4	0.929	UTR_3_PRIME CG13760 DOWNSTREAM CG13759
3R	9886698	3R_9886698_SNP [dm3] 3R_14060976_SNP [dm6]	A	C	4.515e^-4	0.929	INTRON foxo	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	9886708	3R_9886708_SNP [dm3] 3R_14060986_SNP [dm6]	C	T	4.515e^-4	0.929	INTRON foxo	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	8889094	2R_8889094_SNP [dm3] 2R_13001589_SNP [dm6]	T	C	4.522e^-4	0.929	SYNONYMOUS_CODING Su_z_2	TF binding site mE1_TFBS_sens
2L	7954157	2L_7954157_INS [dm3] 2L_7954157_INS [dm6]	T	TGGT	4.523e^-4	0.929	INTRON Snoo
2R	11522384	2R_11522384_SNP [dm3] 2R_15634879_SNP [dm6]	T	C	4.528e^-4	0.929	INTRON CG42524
2R	11522641	2R_11522641_SNP [dm3] 2R_15635136_SNP [dm6]	C	A	4.528e^-4	0.929	INTRON CG42524
2L	7814200	2L_7814200_INS [dm3] 2L_7814200_INS [dm6]	G	GG	4.528e^-4	0.929	UPSTREAM LanB1 INTRON LanB1
3R	24578381	3R_24578381_SNP [dm3] 3R_28752659_SNP [dm6]	A	G	4.535e^-4	0.929	UPSTREAM CG10000 INTERGENIC
3L	18114521	3L_18114521_SNP [dm3] 3L_18121421_SNP [dm6]	A	G	4.553e^-4	0.929	DOWNSTREAM CG7341 INTRON CG42853
2R	12524938	2R_12524938_SNP [dm3] 2R_16637433_SNP [dm6]	T	C	4.555e^-4	0.929	INTRON Alk	TF binding site BDTNP1_TFBS_dl
2R	16794573	2R_16794573_SNP [dm3] 2R_20907068_SNP [dm6]	G	A	4.571e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23575076	3R_23575076_SNP [dm3] 3R_27749354_SNP [dm6]	C	G	4.606e^-4	0.929	DOWNSTREAM Ets98B INTERGENIC
3R	24533456	3R_24533456_SNP [dm3] 3R_28707734_SNP [dm6]	C	T	4.606e^-4	0.929	INTRON htt	TF binding site mE1_TFBS_chinmo
3L	12062279	3L_12062279_SNP [dm3] 3L_12069179_SNP [dm6]	G	A	4.607e^-4	0.929	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	6945607	X_6945607_SNP [dm3] X_7051574_SNP [dm6]	C	T	4.616e^-4	0.929	INTRON CG12541
X	17569830	X_17569830_SNP [dm3] X_17675797_SNP [dm6]	C	G	4.629e^-4	0.929	NON_SYNONYMOUS_CODING chas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10554609	2L_10554609_DEL [dm3] 2L_10554609_DEL [dm6]	AATCCAATGCAATGCAAA...	A	4.640e^-4	0.929	INTRON Trim9	TF binding site mE1_TFBS_cad
2R	7205835	2R_7205835_SNP [dm3] 2R_11318330_SNP [dm6]	G	C	4.661e^-4	0.929	UPSTREAM nompA INTRON nompA
X	19361762	X_19361762_SNP [dm3] X_19467729_SNP [dm6]	A	G	4.668e^-4	0.929	INTRON kek5
2L	8747245	2L_8747245_SNP [dm3] 2L_8747245_SNP [dm6]	A	G	4.682e^-4	0.929	INTERGENIC
X	3856676	X_3856676_SNP [dm3] X_3962643_SNP [dm6]	C	A	4.689e^-4	0.929	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_HSA
3R	26672986	3R_26672986_SNP [dm3] 3R_30847264_SNP [dm6]	A	G	4.697e^-4	0.929	INTERGENIC
X	2999531	X_2999531_SNP [dm3] X_3105498_SNP [dm6]	C	T	4.698e^-4	0.929	INTRON kirre
3L	18574941	3L_18574941_DEL [dm3] 3L_18581841_DEL [dm6]	CACTAGCATT	C	4.703e^-4	0.929	INTERGENIC
X	13964618	X_13964618_SNP [dm3] X_14070585_SNP [dm6]	C	A	4.710e^-4	0.929	UPSTREAM tRNA:S474:12Eh INTERGENIC
X	13964633	X_13964633_SNP [dm3] X_14070600_SNP [dm6]	G	C	4.710e^-4	0.929	UPSTREAM tRNA:S474:12Eh INTERGENIC
2L	6904698	2L_6904698_SNP [dm3] 2L_6904698_SNP [dm6]	G	A	4.728e^-4	0.929	INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18833999	2R_18833999_SNP [dm3] 2R_22946476_SNP [dm6]	G	C	4.743e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	17152487	3L_17152487_SNP [dm3] 3L_17159387_SNP [dm6]	C	T	4.767e^-4	0.929	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl
3L	22911562	3L_22911562_SNP [dm3] 3L_22918462_SNP [dm6]	A	T	4.782e^-4	0.929	INTRON CG12768	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15721747	3L_15721747_INS [dm3] 3L_15728647_INS [dm6]	T	TT	4.829e^-4	0.929	UPSTREAM comm INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5601545	3R_5601545_SNP [dm3] 3R_9775823_SNP [dm6]	A	G	4.834e^-4	0.929	NON_SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo
2L	3848125	2L_3848125_INS [dm3] 2L_3848125_INS [dm6]	A	AAG	4.840e^-4	0.929	INTERGENIC
3L	17040295	3L_17040295_SNP [dm3] 3L_17047195_SNP [dm6]	A	G	4.856e^-4	0.929	INTRON TpnC73F
3L	2824870	3L_2824870_SNP [dm3] 3L_2824870_SNP [dm6]	T	C	4.860e^-4	0.929	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2824926	3L_2824926_SNP [dm3] 3L_2824926_SNP [dm6]	G	T	4.860e^-4	0.929	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18555098	X_18555098_INS [dm3] X_18661065_INS [dm6]	C	CCAC	4.860e^-4	0.929	UTR_3_PRIME fu INTRON CG6696	TF binding site mE1_TFBS_chinmo
2R	9628429	2R_9628429_SNP [dm3] 2R_13740924_SNP [dm6]	T	A	4.862e^-4	0.929	INTRON fas
3R	26571821	3R_26571821_SNP [dm3] 3R_30746099_SNP [dm6]	T	G	4.879e^-4	0.929	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
3R	26577766	3R_26577766_SNP [dm3] 3R_30752044_SNP [dm6]	C	T	4.879e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15696839	2R_15696839_SNP [dm3] 2R_19809334_SNP [dm6]	G	T	4.882e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9827108	3L_9827108_SNP [dm3] 3L_9834008_SNP [dm6]	A	T	4.897e^-4	0.929	UTR_3_PRIME CG43897 DOWNSTREAM I-2
2R	18539924	2R_18539924_SNP [dm3] 2R_22652419_SNP [dm6]	T	C	4.925e^-4	0.929	UTR_3_PRIME nsr DOWNSTREAM Cyp6d2 & 1 other
3L	9019884	3L_9019884_SNP [dm3] 3L_9026784_SNP [dm6]	A	T	4.928e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	12260858	2L_12260858_SNP [dm3] 2L_12260858_SNP [dm6]	A	T	4.937e^-4	0.929	INTRON aret
X	18250782	X_18250782_SNP [dm3] X_18356749_SNP [dm6]	G	T	4.963e^-4	0.929	UPSTREAM CG6123 INTERGENIC	transposable element FlyBase
X	19646998	X_19646998_SNP [dm3] X_19752965_SNP [dm6]	A	G	4.963e^-4	0.929	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens
3R	9757828	3R_9757828_SNP [dm3] 3R_13932106_SNP [dm6]	A	G	4.967e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	19453863	3R_19453863_SNP [dm3] 3R_23628141_SNP [dm6]	A	T	4.981e^-4	0.929	INTRON CG31145
3L	12081736	3L_12081736_SNP [dm3] 3L_12088636_SNP [dm6]	T	G	4.987e^-4	0.929	START_GAINED CG17154 UTR_5_PRIME CG17154	TF binding site mE1_TFBS_inv
3L	8302666	3L_8302666_SNP [dm3] 3L_8309566_SNP [dm6]	T	A	4.988e^-4	0.929	UPSTREAM BI-1 DOWNSTREAM CG7185 EXON CR45409	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2R	5972672	2R_5972672_SNP [dm3] 2R_10085167_SNP [dm6]	T	C	5.017e^-4	0.929	UPSTREAM CG2269 DOWNSTREAM egr & 1 other INTERGENIC
3R	16863149	3R_16863149_SNP [dm3] 3R_21037427_SNP [dm6]	A	T	5.028e^-4	0.929	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
2R	19895314	2R_19895314_SNP [dm3] 2R_24007791_SNP [dm6]	C	A	5.044e^-4	0.929	INTRON Unc-89	TF binding site mE1_TFBS_cad
X	12756123	X_12756123_INS [dm3] X_12862090_INS [dm6]	A	AGAAAA	5.046e^-4	0.929	INTRON Pde9
3L	15718176	3L_15718176_SNP [dm3] 3L_15725076_SNP [dm6]	C	T	5.053e^-4	0.929	INTRON comm
2R	2717156	2R_2717156_DEL [dm3] 2R_6829651_DEL [dm6]	CCGTTCCTACC...	C	5.053e^-4	0.929	UTR_5_PRIME CG15236	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad
3L	12062702	3L_12062702_SNP [dm3] 3L_12069602_SNP [dm6]	C	A	5.057e^-4	0.929	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16282468	3L_16282468_SNP [dm3] 3L_16289368_SNP [dm6]	G	C	5.060e^-4	0.929	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
X	2648039	X_2648039_SNP [dm3] X_2754006_SNP [dm6]	C	T	5.063e^-4	0.929	INTRON kirre
X	2648079	X_2648079_SNP [dm3] X_2754046_SNP [dm6]	A	G	5.063e^-4	0.929	INTRON kirre
3L	14320585	3L_14320585_SNP [dm3] 3L_14327485_SNP [dm6]	C	A	5.075e^-4	0.929	INTRON fz
2L	7010994	2L_7010994_SNP [dm3] 2L_7010994_SNP [dm6]	A	G	5.079e^-4	0.929	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3461908	3L_3461908_SNP [dm3] 3L_3461908_SNP [dm6]	T	A	5.105e^-4	0.929	UPSTREAM eIF5B & 1 other INTRON armi	TF binding site BDTNP1_TFBS_dl
2R	19557369	2R_19557369_SNP [dm3] 2R_23669846_SNP [dm6]	T	C	5.110e^-4	0.929	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13123038	2L_13123038_SNP [dm3] 2L_13123038_SNP [dm6]	G	A	5.155e^-4	0.929	INTERGENIC
X	16412621	X_16412621_SNP [dm3] X_16518588_SNP [dm6]	A	G	5.163e^-4	0.929	INTRON para
2L	11230842	2L_11230842_SNP [dm3] 2L_11230842_SNP [dm6]	A	C	5.172e^-4	0.929	INTRON ab
2L	19091932	2L_19091932_SNP [dm3] 2L_19091932_SNP [dm6]	C	T	5.197e^-4	0.929	INTRON Lim3
2L	11821525	2L_11821525_SNP [dm3] 2L_11821525_SNP [dm6]	G	T	5.209e^-4	0.929	UTR_5_PRIME Pde1c INTRON Pde1c
2L	19091939	2L_19091939_SNP [dm3] 2L_19091939_SNP [dm6]	C	T	5.209e^-4	0.929	INTRON Lim3
X	6093318	X_6093318_SNP [dm3] X_6199285_SNP [dm6]	T	A	5.212e^-4	0.929	NON_SYNONYMOUS_CODING CG43090 UPSTREAM CG32751 DOWNSTREAM vanin-like
3L	14560742	3L_14560742_SNP [dm3] 3L_14567642_SNP [dm6]	C	G	5.212e^-4	0.929	UTR_5_PRIME CG42758
3L	13233378	3L_13233378_SNP [dm3] 3L_13240278_SNP [dm6]	T	C	5.250e^-4	0.929	INTRON caps
3L	2980859	3L_2980859_SNP [dm3] 3L_2980859_SNP [dm6]	C	T	5.250e^-4	0.929	UPSTREAM CG2107 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15520803	2L_15520803_SNP [dm3] 2L_15520803_SNP [dm6]	C	A	5.255e^-4	0.929	INTERGENIC
3L	4119051	3L_4119051_INS [dm3] 3L_4119051_INS [dm6]	A	ATCCATCGCAGTTTCTGTAT...	5.256e^-4	0.929	INTRON Chd64
2R	4524581	2R_4524581_SNP [dm3] 2R_8637076_SNP [dm6]	T	G	5.284e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4494444	2R_4494444_SNP [dm3] 2R_8606939_SNP [dm6]	T	C	5.298e^-4	0.929	INTRON rgr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7085839	2R_7085839_DEL [dm3] 2R_11198334_DEL [dm6]	TTAATTAAT	T	5.315e^-4	0.929	UTR_5_PRIME shn INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16282385	3L_16282385_SNP [dm3] 3L_16289285_SNP [dm6]	T	C	5.351e^-4	0.929	UPSTREAM CG13046 DOWNSTREAM CG13045 INTERGENIC
3R	19146677	3R_19146677_SNP [dm3] 3R_23320955_SNP [dm6]	T	C	5.359e^-4	0.929	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12024921	2L_12024921_SNP [dm3] 2L_12024921_SNP [dm6]	C	G	5.360e^-4	0.929	INTRON CR44587
3L	22923904	3L_22923904_INS [dm3] 3L_22930804_INS [dm6]	A	ACTTA	5.376e^-4	0.929	INTERGENIC
3L	3759134	3L_3759134_INS [dm3] 3L_3759134_INS [dm6]	T	TT	5.384e^-4	0.929	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA
3R	24123726	3R_24123726_SNP [dm3] 3R_28298004_SNP [dm6]	G	A	5.446e^-4	0.929	INTERGENIC
2L	15634340	2L_15634340_SNP [dm3] 2L_15634340_SNP [dm6]	C	A	5.448e^-4	0.929	UTR_3_PRIME CG18480
2R	8471371	2R_8471371_SNP [dm3] 2R_12583866_SNP [dm6]	C	A	5.459e^-4	0.929	INTRON Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10481055	3L_10481055_SNP [dm3] 3L_10487955_SNP [dm6]	T	G	5.478e^-4	0.929	INTRON A2bp1
3L	14561267	3L_14561267_SNP [dm3] 3L_14568167_SNP [dm6]	G	T	5.500e^-4	0.929	DOWNSTREAM CG42758 INTERGENIC
3L	14561276	3L_14561276_DEL [dm3] 3L_14568176_DEL [dm6]	ATA	A	5.500e^-4	0.929	DOWNSTREAM CG42758 INTERGENIC
3L	14561280	3L_14561280_SNP [dm3] 3L_14568180_SNP [dm6]	A	T	5.500e^-4	0.929	DOWNSTREAM CG42758 INTERGENIC
3L	14561289	3L_14561289_SNP [dm3] 3L_14568189_SNP [dm6]	C	T	5.500e^-4	0.929	DOWNSTREAM CG42758 INTERGENIC
3L	14561298	3L_14561298_SNP [dm3] 3L_14568198_SNP [dm6]	G	C	5.500e^-4	0.929	DOWNSTREAM CG42758 INTERGENIC
3L	14561308	3L_14561308_SNP [dm3] 3L_14568208_SNP [dm6]	C	G	5.500e^-4	0.929	DOWNSTREAM CG42758 INTERGENIC
2L	8944614	2L_8944614_SNP [dm3] 2L_8944614_SNP [dm6]	T	G	5.510e^-4	0.929	SYNONYMOUS_CODING C1GalTA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8944626	2L_8944626_SNP [dm3] 2L_8944626_SNP [dm6]	A	G	5.510e^-4	0.929	SYNONYMOUS_CODING C1GalTA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8944635	2L_8944635_SNP [dm3] 2L_8944635_SNP [dm6]	G	A	5.510e^-4	0.929	SYNONYMOUS_CODING C1GalTA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24707385	3R_24707385_SNP [dm3] 3R_28881663_SNP [dm6]	C	T	5.528e^-4	0.929	SYNONYMOUS_CODING CG14527 INTRON CG33203
3R	1334806	3R_1334806_SNP [dm3] 3R_5509084_SNP [dm6]	A	T	5.529e^-4	0.929	UTR_3_PRIME Nmdar1
3R	15418035	3R_15418035_SNP [dm3] 3R_19592313_SNP [dm6]	A	T	5.530e^-4	0.929	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23679614	3R_23679614_SNP [dm3] 3R_27853892_SNP [dm6]	A	G	5.544e^-4	0.929	INTRON CG34353
2R	19141371	2R_19141371_SNP [dm3] 2R_23253848_SNP [dm6]	C	A	5.546e^-4	0.929	INTERGENIC
X	21440003	X_21440003_SNP [dm3] X_21568976_SNP [dm6]	G	T	5.547e^-4	0.929	INTERGENIC
2L	13699553	2L_13699553_SNP [dm3] 2L_13699553_SNP [dm6]	A	G	5.562e^-4	0.929	INTRON CG31814
3R	10249196	3R_10249196_SNP [dm3] 3R_14423474_SNP [dm6]	C	T	5.564e^-4	0.929	UPSTREAM CR44176 INTRON cv-c
3R	24100331	3R_24100331_INS [dm3] 3R_28274609_INS [dm6]	A	TGAT	5.571e^-4	0.929	INTERGENIC
3R	26577800	3R_26577800_SNP [dm3] 3R_30752078_SNP [dm6]	G	C	5.574e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5879703	X_5879703_SNP [dm3] X_5985670_SNP [dm6]	T	C	5.580e^-4	0.929	SYNONYMOUS_CODING Grip
2L	9371700	2L_9371700_SNP [dm3] 2L_9371700_SNP [dm6]	G	T	5.597e^-4	0.929	UTR_3_PRIME Shawl UPSTREAM CR43865
3L	3823160	3L_3823160_SNP [dm3] 3L_3823160_SNP [dm6]	A	C	5.597e^-4	0.929	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3446252	3L_3446252_SNP [dm3] 3L_3446252_SNP [dm6]	T	G	5.610e^-4	0.929	INTRON eIF5B
3L	3446255	3L_3446255_SNP [dm3] 3L_3446255_SNP [dm6]	C	T	5.610e^-4	0.929	INTRON eIF5B
3R	15659076	3R_15659076_SNP [dm3] 3R_19833354_SNP [dm6]	G	T	5.612e^-4	0.929	INTRON bnl
3L	16309836	3L_16309836_SNP [dm3] 3L_16316736_SNP [dm6]	G	A	5.619e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3759047	3L_3759047_SNP [dm3] 3L_3759047_SNP [dm6]	C	T	5.621e^-4	0.929	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA
X	20888506	X_20888506_SNP [dm3] X_21017479_SNP [dm6]	G	A	5.650e^-4	0.929	INTERGENIC
X	2331802	X_2331802_SNP [dm3] X_2437769_SNP [dm6]	T	C	5.658e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9273155	X_9273155_SNP [dm3] X_9379122_SNP [dm6]	A	G	5.674e^-4	0.929	INTRON mgl
3R	1321175	3R_1321175_SNP [dm3] 3R_5495453_SNP [dm6]	C	G	5.686e^-4	0.929	INTRON CG31547
3R	1329126	3R_1329126_SNP [dm3] 3R_5503404_SNP [dm6]	C	T	5.686e^-4	0.929	UPSTREAM CG31547 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	1339342	3R_1339342_SNP [dm3] 3R_5513620_SNP [dm6]	A	T	5.686e^-4	0.929	INTRON Nmdar1
3R	1339450	3R_1339450_SNP [dm3] 3R_5513728_SNP [dm6]	G	A	5.686e^-4	0.929	INTRON Nmdar1
3R	1340113	3R_1340113_SNP [dm3] 3R_5514391_SNP [dm6]	G	C	5.686e^-4	0.929	INTRON Nmdar1
3R	1340675	3R_1340675_SNP [dm3] 3R_5514953_SNP [dm6]	T	C	5.686e^-4	0.929	INTRON Nmdar1
3R	1454528	3R_1454528_SNP [dm3] 3R_5628806_SNP [dm6]	A	G	5.686e^-4	0.929	NON_SYNONYMOUS_CODING CG31551	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	19143038	2R_19143038_INS [dm3] 2R_23255515_INS [dm6]	A	TGG	5.696e^-4	0.929	INTERGENIC
X	14927943	X_14927943_SNP [dm3] X_15033910_SNP [dm6]	T	C	5.698e^-4	0.929	SYNONYMOUS_CODING be UTR_3_PRIME be INTRON hiw
2R	8882005	2R_8882005_SNP [dm3] 2R_12994500_SNP [dm6]	T	C	5.722e^-4	0.929	NON_SYNONYMOUS_CODING CG33798
3L	22499814	3L_22499814_SNP [dm3] 3L_22506714_SNP [dm6]	T	C	5.738e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	969133	3R_969133_SNP [dm3] 3R_5143411_SNP [dm6]	A	G	5.738e^-4	0.929	INTERGENIC
3L	24001926	3L_24001926_SNP [dm3] 3L_24008826_SNP [dm6]	T	A	5.744e^-4	0.929	INTERGENIC
3R	17393618	3R_17393618_SNP [dm3] 3R_21567896_SNP [dm6]	A	T	5.749e^-4	0.929	INTRON CG15498
X	6455420	X_6455420_SNP [dm3] X_6561387_SNP [dm6]	C	T	5.754e^-4	0.929	SYNONYMOUS_CODING CG34417
2L	15530569	2L_15530569_DEL [dm3] 2L_15530569_DEL [dm6]	AAGAGACCAAA...	A	5.764e^-4	0.929	INTERGENIC
2R	11525199	2R_11525199_SNP [dm3] 2R_15637694_SNP [dm6]	T	C	5.769e^-4	0.929	INTRON CG42524
X	5160307	X_5160307_SNP [dm3] X_5266274_SNP [dm6]	C	T	5.780e^-4	0.929	INTERGENIC
3R	15417805	3R_15417805_DEL [dm3] 3R_19592083_DEL [dm6]	AA	A	5.785e^-4	0.929	INTRON Dys	TF binding site mE1_TFBS_sbb
3R	15417812	3R_15417812_INS [dm3] 3R_19592090_INS [dm6]	A	ACGAA	5.785e^-4	0.929	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17737621	3L_17737621_SNP [dm3] 3L_17744521_SNP [dm6]	G	A	5.794e^-4	0.929	DOWNSTREAM CG6034 INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2R	9748959	2R_9748959_SNP [dm3] 2R_13861454_SNP [dm6]	T	C	5.795e^-4	0.929	UPSTREAM CG13344 INTRON CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
2R	9748976	2R_9748976_SNP [dm3] 2R_13861471_SNP [dm6]	C	A	5.795e^-4	0.929	UPSTREAM CG13344 INTRON CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
2R	9748985	2R_9748985_SNP [dm3] 2R_13861480_SNP [dm6]	C	T	5.795e^-4	0.929	UPSTREAM CG13344 INTRON CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
2R	9749024	2R_9749024_SNP [dm3] 2R_13861519_SNP [dm6]	G	A	5.795e^-4	0.929	UPSTREAM CG13344 INTRON CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	7095997	2L_7095997_SNP [dm3] 2L_7095997_SNP [dm6]	A	G	5.821e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16492704	2L_16492704_SNP [dm3] 2L_16492704_SNP [dm6]	C	T	5.823e^-4	0.929	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
3L	3461455	3L_3461455_SNP [dm3] 3L_3461455_SNP [dm6]	G	A	5.850e^-4	0.929	UTR_5_PRIME armi UPSTREAM eIF5B & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
X	17847785	X_17847785_SNP [dm3] X_17953752_SNP [dm6]	T	A	5.855e^-4	0.929	INTRON Sh
3R	25244780	3R_25244780_DEL [dm3] 3R_29419058_DEL [dm6]	GT	G	5.857e^-4	0.929	INTRON Ptp99A
2L	13030680	2L_13030680_SNP [dm3] 2L_13030680_SNP [dm6]	C	A	5.874e^-4	0.929	SYNONYMOUS_CODING CG9932	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3007003	2L_3007003_SNP [dm3] 2L_3007003_SNP [dm6]	G	A	5.874e^-4	0.929	INTRON CG17265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10270058	2R_10270058_SNP [dm3] 2R_14382553_SNP [dm6]	A	T	5.874e^-4	0.929	INTRON Dh44-R1	TF binding site BDTNP1_TFBS_da
2R	11516866	2R_11516866_SNP [dm3] 2R_15629361_SNP [dm6]	A	G	5.874e^-4	0.929	INTRON CG42524
2R	12574127	2R_12574127_SNP [dm3] 2R_16686622_SNP [dm6]	C	T	5.874e^-4	0.929	INTRON CG30463
2R	17125026	2R_17125026_SNP [dm3] 2R_21237521_SNP [dm6]	C	T	5.874e^-4	0.929	INTRON ASPP
2R	17125028	2R_17125028_SNP [dm3] 2R_21237523_SNP [dm6]	T	G	5.874e^-4	0.929	INTRON ASPP
2R	18966942	2R_18966942_SNP [dm3] 2R_23079419_SNP [dm6]	C	T	5.874e^-4	0.929	UTR_3_PRIME CG43659 UPSTREAM Art7	TF binding site BDTNP1_TFBS_dl
3L	10906658	3L_10906658_SNP [dm3] 3L_10913558_SNP [dm6]	C	T	5.874e^-4	0.929	INTERGENIC
3L	12599455	3L_12599455_SNP [dm3] 3L_12606355_SNP [dm6]	G	A	5.874e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	12599913	3L_12599913_SNP [dm3] 3L_12606813_SNP [dm6]	C	G	5.874e^-4	0.929	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12600338	3L_12600338_SNP [dm3] 3L_12607238_SNP [dm6]	C	T	5.874e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	19018414	X_19018414_SNP [dm3] X_19124381_SNP [dm6]	G	C	5.874e^-4	0.929	START_GAINED CG15882 UTR_5_PRIME CG15882 DOWNSTREAM tgy
X	19020090	X_19020090_SNP [dm3] X_19126057_SNP [dm6]	G	C	5.874e^-4	0.929	NON_SYNONYMOUS_CODING tgy
X	4358163	X_4358163_SNP [dm3] X_4464130_SNP [dm6]	G	C	5.874e^-4	0.929	INTRON bi & 1 other	TF binding site BDTNP1_TFBS_Med
2R	17348950	2R_17348950_SNP [dm3] 2R_21461445_SNP [dm6]	C	T	5.888e^-4	0.929	INTRON Sdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17736914	3L_17736914_SNP [dm3] 3L_17743814_SNP [dm6]	T	C	5.898e^-4	0.929	INTRON Ccn
3L	17740761	3L_17740761_SNP [dm3] 3L_17747661_SNP [dm6]	C	G	5.898e^-4	0.929	UPSTREAM CG6034 INTRON Ccn
X	9467641	X_9467641_SNP [dm3] X_9573608_SNP [dm6]	G	A	5.903e^-4	0.929	SYNONYMOUS_CODING CG32699
X	1976698	X_1976698_SNP [dm3] X_2082665_SNP [dm6]	G	T	5.909e^-4	0.929	INTRON Unc-76	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16353238	2R_16353238_SNP [dm3] 2R_20465733_SNP [dm6]	G	A	5.942e^-4	0.929	SYNONYMOUS_CODING CG12484
3L	8865832	3L_8865832_INS [dm3] 3L_8872732_INS [dm6]	A	CT	5.949e^-4	0.929	INTRON dally	TF binding site BDTNP1_TFBS_twi
3L	8865838	3L_8865838_SNP [dm3] 3L_8872738_SNP [dm6]	A	T	5.949e^-4	0.929	INTRON dally	TF binding site BDTNP1_TFBS_twi
3L	8865842	3L_8865842_SNP [dm3] 3L_8872742_SNP [dm6]	A	G	5.949e^-4	0.929	INTRON dally	TF binding site BDTNP1_TFBS_twi
3L	8865847	3L_8865847_SNP [dm3] 3L_8872747_SNP [dm6]	T	A	5.949e^-4	0.929	INTRON dally	TF binding site BDTNP1_TFBS_twi
3L	8865865	3L_8865865_DEL [dm3] 3L_8872765_DEL [dm6]	GT	G	5.949e^-4	0.929	INTRON dally	TF binding site BDTNP1_TFBS_twi
3L	2536026	3L_2536026_SNP [dm3] 3L_2536026_SNP [dm6]	T	C	5.962e^-4	0.929	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_chinmo
2L	2265737	2L_2265737_SNP [dm3] 2L_2265737_SNP [dm6]	G	A	5.998e^-4	0.929	UPSTREAM CG34049 INTERGENIC
3L	3586112	3L_3586112_SNP [dm3] 3L_3586112_SNP [dm6]	T	C	6.005e^-4	0.929	INTRON Eip63E
2R	18774825	2R_18774825_SNP [dm3] 2R_22887302_SNP [dm6]	C	A	6.014e^-4	0.929	DOWNSTREAM Gmer INTRON asrij	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	2270853	X_2270853_SNP [dm3] X_2376820_SNP [dm6]	A	T	6.016e^-4	0.929	UTR_3_PRIME PsGEF INTRON PsGEF
X	5751877	X_5751877_SNP [dm3] X_5857844_SNP [dm6]	G	C	6.025e^-4	0.929	INTERGENIC
X	16724268	X_16724268_SNP [dm3] X_16830235_SNP [dm6]	A	T	6.033e^-4	0.929	INTRON CG13004
3R	10944186	3R_10944186_INS [dm3] 3R_15118464_INS [dm6]	C	CC	6.035e^-4	0.929	INTRON CG42788
2L	2268291	2L_2268291_SNP [dm3] 2L_2268291_SNP [dm6]	C	T	6.037e^-4	0.929	UTR_3_PRIME CG17242 DOWNSTREAM CG17242
2R	11980171	2R_11980171_SNP [dm3] 2R_16092666_SNP [dm6]	C	T	6.040e^-4	0.929	INTRON Dg
3R	443304	3R_443304_DEL [dm3] 3R_4617582_DEL [dm6]	GGTCAACATGG...	G	6.040e^-4	0.929	INTRON 5-HT2A
X	18252707	X_18252707_SNP [dm3] X_18358674_SNP [dm6]	A	T	6.046e^-4	0.929	UPSTREAM CG6106 INTERGENIC	TF binding site mE1_TFBS_HSA
X	18252723	X_18252723_SNP [dm3] X_18358690_SNP [dm6]	C	T	6.046e^-4	0.929	UPSTREAM CG6106 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	3221795	3R_3221795_SNP [dm3] 3R_7396073_SNP [dm6]	A	T	6.078e^-4	0.929	INTERGENIC
3R	3221997	3R_3221997_SNP [dm3] 3R_7396275_SNP [dm6]	T	C	6.078e^-4	0.929	INTERGENIC
X	11654624	X_11654624_SNP [dm3] X_11760591_SNP [dm6]	G	A	6.081e^-4	0.929	INTRON m
3R	19481832	3R_19481832_SNP [dm3] 3R_23656110_SNP [dm6]	A	T	6.082e^-4	0.929	INTRON CG31145
3R	14649818	3R_14649818_SNP [dm3] 3R_18824096_SNP [dm6]	G	T	6.084e^-4	0.929	INTRON CG18208
X	5956645	X_5956645_SNP [dm3] X_6062612_SNP [dm6]	G	A	6.088e^-4	0.929	INTRON CG5921
X	19433395	X_19433395_SNP [dm3] X_19539362_SNP [dm6]	C	T	6.102e^-4	0.929	INTRON CG32532
3R	24727822	3R_24727822_SNP [dm3] 3R_28902100_SNP [dm6]	A	T	6.105e^-4	0.929	UPSTREAM Doa INTRON Doa
3L	17527649	3L_17527649_SNP [dm3] 3L_17534549_SNP [dm6]	G	A	6.110e^-4	0.929	NON_SYNONYMOUS_CODING Nedd4 INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16438745	2R_16438745_SNP [dm3] 2R_20551240_SNP [dm6]	G	A	6.115e^-4	0.929	NON_SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	22756672	3R_22756672_SNP [dm3] 3R_26930950_SNP [dm6]	G	A	6.117e^-4	0.929	INTRON sda
3L	7977693	3L_7977693_SNP [dm3] 3L_7984593_SNP [dm6]	C	T	6.120e^-4	0.929	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	4425328	2L_4425328_SNP [dm3] 2L_4425328_SNP [dm6]	A	G	6.124e^-4	0.929	INTRON CG15431
2L	4432858	2L_4432858_SNP [dm3] 2L_4432858_SNP [dm6]	C	A	6.124e^-4	0.929	INTRON CG15431
2L	4432862	2L_4432862_SNP [dm3] 2L_4432862_SNP [dm6]	A	C	6.124e^-4	0.929	INTRON CG15431
2L	4432869	2L_4432869_SNP [dm3] 2L_4432869_SNP [dm6]	A	T	6.124e^-4	0.929	INTRON CG15431
2R	3264665	2R_3264665_SNP [dm3] 2R_7377160_SNP [dm6]	C	T	6.124e^-4	0.929	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6099207	X_6099207_SNP [dm3] X_6205174_SNP [dm6]	T	A	6.124e^-4	0.929	INTERGENIC
3R	10267204	3R_10267204_DEL [dm3] 3R_14441482_DEL [dm6]	GTACAACTTCTA...	G	6.138e^-4	0.929	INTRON cv-c
3R	24705841	3R_24705841_SNP [dm3] 3R_28880119_SNP [dm6]	G	A	6.144e^-4	0.929	UTR_5_PRIME CG14523 UPSTREAM CG14527 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13633393	2R_13633393_SNP [dm3] 2R_17745888_SNP [dm6]	G	A	6.176e^-4	0.929	UTR_3_PRIME sub & 1 other
2R	15698492	2R_15698492_SNP [dm3] 2R_19810987_SNP [dm6]	C	T	6.183e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	15700132	2R_15700132_SNP [dm3] 2R_19812627_SNP [dm6]	C	T	6.183e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12540675	3L_12540675_DEL [dm3] 3L_12547575_DEL [dm6]	TA	T	6.183e^-4	0.929	INTRON sowah
2L	16220887	2L_16220887_SNP [dm3] 2L_16220887_SNP [dm6]	G	C	6.184e^-4	0.929	INTERGENIC
3R	5248018	3R_5248018_SNP [dm3] 3R_9422296_SNP [dm6]	A	G	6.203e^-4	0.929	INTRON ps	TF binding site BDTNP1_TFBS_dl
X	13643177	X_13643177_SNP [dm3] X_13749144_SNP [dm6]	A	G	6.218e^-4	0.929	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25565768	3R_25565768_SNP [dm3] 3R_29740046_SNP [dm6]	T	G	6.244e^-4	0.929	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25565825	3R_25565825_SNP [dm3] 3R_29740103_SNP [dm6]	C	T	6.244e^-4	0.929	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25565837	3R_25565837_SNP [dm3] 3R_29740115_SNP [dm6]	T	G	6.244e^-4	0.929	UPSTREAM CG1969 INTRON CG1969	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	4839089	X_4839089_SNP [dm3] X_4945056_SNP [dm6]	A	G	6.253e^-4	0.929	INTRON Ptp4E
2L	4679490	2L_4679490_SNP [dm3] 2L_4679490_SNP [dm6]	A	C	6.261e^-4	0.929	INTERGENIC
3R	26892755	3R_26892755_SNP [dm3] 3R_31067033_SNP [dm6]	A	T	6.263e^-4	0.929	INTRON Sox100B
2L	7775153	2L_7775153_DEL [dm3] 2L_7775153_DEL [dm6]	AAA	A	6.274e^-4	0.929	DOWNSTREAM CG7179 & 1 other INTERGENIC
3L	7902127	3L_7902127_SNP [dm3] 3L_7909027_SNP [dm6]	A	G	6.284e^-4	0.929	INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	15658975	3R_15658975_SNP [dm3] 3R_19833253_SNP [dm6]	G	T	6.301e^-4	0.929	INTRON bnl
3R	15658996	3R_15658996_SNP [dm3] 3R_19833274_SNP [dm6]	T	C	6.301e^-4	0.929	INTRON bnl
3R	15659004	3R_15659004_SNP [dm3] 3R_19833282_SNP [dm6]	C	T	6.301e^-4	0.929	INTRON bnl
3R	15659048	3R_15659048_SNP [dm3] 3R_19833326_SNP [dm6]	T	G	6.301e^-4	0.929	INTRON bnl
2R	18967097	2R_18967097_SNP [dm3] 2R_23079574_SNP [dm6]	G	A	6.302e^-4	0.929	NON_SYNONYMOUS_CODING CG43659 UPSTREAM Art7 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	23653357	3R_23653357_SNP [dm3] 3R_27827635_SNP [dm6]	A	G	6.304e^-4	0.929	INTRON CG34353
3R	10600659	3R_10600659_SNP [dm3] 3R_14774937_SNP [dm6]	T	A	6.305e^-4	0.929	INTRON jvl
3R	10600664	3R_10600664_SNP [dm3] 3R_14774942_SNP [dm6]	C	A	6.305e^-4	0.929	INTRON jvl
X	13435399	X_13435399_SNP [dm3] X_13541366_SNP [dm6]	T	C	6.338e^-4	0.929	INTERGENIC
3R	15117139	3R_15117139_SNP [dm3] 3R_19291417_SNP [dm6]	C	T	6.356e^-4	0.929	INTERGENIC
3L	1290901	3L_1290901_SNP [dm3] 3L_1290901_SNP [dm6]	A	T	6.371e^-4	0.929	NON_SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18251389	X_18251389_SNP [dm3] X_18357356_SNP [dm6]	G	A	6.385e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9825444	2L_9825444_SNP [dm3] 2L_9825444_SNP [dm6]	C	A	6.387e^-4	0.929	INTRON nAChRalpha6
2L	987579	2L_987579_SNP [dm3] 2L_987579_SNP [dm6]	A	G	6.387e^-4	0.929	DOWNSTREAM CR44801 INTERGENIC
2R	11350962	2R_11350962_SNP [dm3] 2R_15463457_SNP [dm6]	G	T	6.387e^-4	0.929	UTR_3_PRIME CG43729 INTRON CG43729
3L	12538082	3L_12538082_SNP [dm3] 3L_12544982_SNP [dm6]	G	A	6.387e^-4	0.929	INTRON sowah	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12538938	3L_12538938_SNP [dm3] 3L_12545838_SNP [dm6]	A	G	6.387e^-4	0.929	INTRON sowah
3L	12538978	3L_12538978_SNP [dm3] 3L_12545878_SNP [dm6]	C	T	6.387e^-4	0.929	INTRON sowah
3L	12596265	3L_12596265_SNP [dm3] 3L_12603165_SNP [dm6]	A	T	6.387e^-4	0.929	INTERGENIC
3L	12596267	3L_12596267_SNP [dm3] 3L_12603167_SNP [dm6]	G	C	6.387e^-4	0.929	INTERGENIC
3L	12596831	3L_12596831_SNP [dm3] 3L_12603731_SNP [dm6]	T	G	6.387e^-4	0.929	INTERGENIC
3L	9408937	3L_9408937_SNP [dm3] 3L_9415837_SNP [dm6]	G	A	6.387e^-4	0.929	UTR_3_PRIME CG3982 INTRON CG3967	TF binding site mE1_TFBS_cad
3R	13457049	3R_13457049_SNP [dm3] 3R_17631327_SNP [dm6]	C	T	6.387e^-4	0.929	UPSTREAM tRNA:CR31573 & 1 other INTRON CG43175	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	14770276	3R_14770276_SNP [dm3] 3R_18944554_SNP [dm6]	G	A	6.387e^-4	0.929	INTRON CG42613
3R	14770294	3R_14770294_SNP [dm3] 3R_18944572_SNP [dm6]	C	A	6.387e^-4	0.929	INTRON CG42613
3R	16017945	3R_16017945_DEL [dm3] 3R_20192223_DEL [dm6]	TCGTTT	T	6.387e^-4	0.929	INTERGENIC
3R	16018030	3R_16018030_SNP [dm3] 3R_20192308_SNP [dm6]	G	A	6.387e^-4	0.929	INTERGENIC
3R	16018035	3R_16018035_SNP [dm3] 3R_20192313_SNP [dm6]	G	A	6.387e^-4	0.929	INTERGENIC
3R	6692809	3R_6692809_SNP [dm3] 3R_10867087_SNP [dm6]	A	G	6.387e^-4	0.929	INTRON SelR
2R	12672137	2R_12672137_DEL [dm3] 2R_16784632_DEL [dm6]	ACTG	A	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672159	2R_12672159_DEL [dm3] 2R_16784654_DEL [dm6]	TATTAACATTAC...	T	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672177	2R_12672177_SNP [dm3] 2R_16784672_SNP [dm6]	C	T	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672180	2R_12672180_SNP [dm3] 2R_16784675_SNP [dm6]	T	C	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672190	2R_12672190_SNP [dm3] 2R_16784685_SNP [dm6]	T	C	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672199	2R_12672199_SNP [dm3] 2R_16784694_SNP [dm6]	C	A	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672200	2R_12672200_SNP [dm3] 2R_16784695_SNP [dm6]	G	A	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672202	2R_12672202_SNP [dm3] 2R_16784697_SNP [dm6]	A	T	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672205	2R_12672205_SNP [dm3] 2R_16784700_SNP [dm6]	A	G	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672207	2R_12672207_SNP [dm3] 2R_16784702_SNP [dm6]	T	G	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12672211	2R_12672211_SNP [dm3] 2R_16784706_SNP [dm6]	T	A	6.401e^-4	0.929	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8693058	2R_8693058_DEL [dm3] 2R_12805553_DEL [dm6]	CCGACCCCCAATGC...	C	6.415e^-4	0.929	INTERGENIC
3L	3439380	3L_3439380_SNP [dm3] 3L_3439380_SNP [dm6]	C	A	6.422e^-4	0.929	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14930474	3L_14930474_SNP [dm3] 3L_14937374_SNP [dm6]	C	T	6.429e^-4	0.929	INTRON DCX-EMAP
2L	7814135	2L_7814135_SNP [dm3] 2L_7814135_SNP [dm6]	C	T	6.435e^-4	0.929	UPSTREAM LanB1 INTRON LanB1
X	18252756	X_18252756_INS [dm3] X_18358723_INS [dm6]	A	ACATA	6.461e^-4	0.929	UPSTREAM CG6106 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1291293	3L_1291293_SNP [dm3] 3L_1291293_SNP [dm6]	C	T	6.463e^-4	0.929	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25643609	3R_25643609_INS [dm3] 3R_29817887_INS [dm6]	T	TCTTGAAAAGAAGAT...	6.468e^-4	0.929	UPSTREAM CG7829 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12711006	3L_12711006_SNP [dm3] 3L_12717906_SNP [dm6]	C	T	6.472e^-4	0.929	INTERGENIC
3L	12711007	3L_12711007_SNP [dm3] 3L_12717907_SNP [dm6]	A	C	6.472e^-4	0.929	INTERGENIC
2L	12406342	2L_12406342_SNP [dm3] 2L_12406342_SNP [dm6]	G	A	6.476e^-4	0.929	DOWNSTREAM vir-1 INTRON vir-1
2L	13131759	2L_13131759_SNP [dm3] 2L_13131759_SNP [dm6]	G	A	6.476e^-4	0.929	SYNONYMOUS_CODING CG5122
2L	15008142	2L_15008142_SNP [dm3] 2L_15008142_SNP [dm6]	A	G	6.476e^-4	0.929	SYNONYMOUS_CODING NC2beta UPSTREAM l_2_35Be DOWNSTREAM l_2_35Bc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15008178	2L_15008178_SNP [dm3] 2L_15008178_SNP [dm6]	T	C	6.476e^-4	0.929	SYNONYMOUS_CODING NC2beta UPSTREAM l_2_35Be DOWNSTREAM l_2_35Bc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6338596	3L_6338596_DEL [dm3] 3L_6345496_DEL [dm6]	CA	C	6.476e^-4	0.929	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	6174275	2R_6174275_SNP [dm3] 2R_10286770_SNP [dm6]	C	T	6.486e^-4	0.929	DOWNSTREAM CAP INTRON CAP
X	2470423	X_2470423_SNP [dm3] X_2576390_SNP [dm6]	A	G	6.495e^-4	0.929	SPLICE_SITE_REGION Pdfr SYNONYMOUS_CODING Pdfr INTRON Pdfr
2L	1956132	2L_1956132_SNP [dm3] 2L_1956132_SNP [dm6]	T	C	6.503e^-4	0.929	INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_GATAe
2R	15032468	2R_15032468_SNP [dm3] 2R_19144963_SNP [dm6]	T	G	6.507e^-4	0.929	INTRON ena EXON CR43399	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3586230	3L_3586230_SNP [dm3] 3L_3586230_SNP [dm6]	G	A	6.515e^-4	0.929	INTRON Eip63E
X	2648225	X_2648225_SNP [dm3] X_2754192_SNP [dm6]	C	T	6.515e^-4	0.929	INTRON kirre
X	2658841	X_2658841_SNP [dm3] X_2764808_SNP [dm6]	A	T	6.515e^-4	0.929	INTRON kirre	TF binding site mE1_TFBS_hkb
2R	16122718	2R_16122718_SNP [dm3] 2R_20235213_SNP [dm6]	A	G	6.515e^-4	0.929	NON_SYNONYMOUS_CODING CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
2R	16122728	2R_16122728_SNP [dm3] 2R_20235223_SNP [dm6]	T	A	6.515e^-4	0.929	NON_SYNONYMOUS_CODING CG44624 UPSTREAM CG44625 DOWNSTREAM CG11044
X	8082020	X_8082020_SNP [dm3] X_8187987_SNP [dm6]	C	T	6.524e^-4	0.929	INTRON sdt
3R	13514235	3R_13514235_SNP [dm3] 3R_17688513_SNP [dm6]	A	T	6.545e^-4	0.929	UTR_3_PRIME osa
3L	10900818	3L_10900818_SNP [dm3] 3L_10907718_SNP [dm6]	G	A	6.563e^-4	0.929	INTERGENIC
2L	6972206	2L_6972206_INS [dm3] 2L_6972206_INS [dm6]	A	ATAAAA	6.565e^-4	0.929	UPSTREAM CR43142 & 1 other DOWNSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	9761338	2R_9761338_SNP [dm3] 2R_13873833_SNP [dm6]	G	A	6.567e^-4	0.929	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3L	6339111	3L_6339111_SNP [dm3] 3L_6346011_SNP [dm6]	C	T	6.567e^-4	0.929	INTRON CG13300	TF binding site mE1_TFBS_Kr
3L	6339137	3L_6339137_SNP [dm3] 3L_6346037_SNP [dm6]	A	G	6.567e^-4	0.929	INTRON CG13300	TF binding site mE1_TFBS_Kr
3L	8301876	3L_8301876_SNP [dm3] 3L_8308776_SNP [dm6]	C	T	6.582e^-4	0.929	UTR_5_PRIME BI-1 DOWNSTREAM CR45409	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	8843700	2L_8843700_SNP [dm3] 2L_8843700_SNP [dm6]	G	T	6.582e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	8843702	2L_8843702_SNP [dm3] 2L_8843702_SNP [dm6]	A	G	6.582e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
X	8126147	X_8126147_SNP [dm3] X_8232114_SNP [dm6]	G	A	6.592e^-4	0.929	INTRON sdt	TF binding site mE1_TFBS_chinmo
2L	7401515	2L_7401515_SNP [dm3] 2L_7401515_SNP [dm6]	T	A	6.606e^-4	0.929	INTRON CG5171
2R	17917290	2R_17917290_SNP [dm3] 2R_22029785_SNP [dm6]	T	A	6.606e^-4	0.929	INTRON CG34370
3R	15418004	3R_15418004_SNP [dm3] 3R_19592282_SNP [dm6]	T	A	6.616e^-4	0.929	INTRON Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9748984	2R_9748984_SNP [dm3] 2R_13861479_SNP [dm6]	A	C	6.618e^-4	0.929	UPSTREAM CG13344 INTRON CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
2L	9529421	2L_9529421_SNP [dm3] 2L_9529421_SNP [dm6]	T	C	6.628e^-4	0.929	SYNONYMOUS_CODING CG31883 INTRON Oatp30B	TF binding site mE1_TFBS_HSA
X	19015286	X_19015286_SNP [dm3] X_19121253_SNP [dm6]	T	C	6.632e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10532320	2R_10532320_SNP [dm3] 2R_14644815_SNP [dm6]	G	A	6.641e^-4	0.929	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9629265	3R_9629265_SNP [dm3] 3R_13803543_SNP [dm6]	G	A	6.684e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3303230	3R_3303230_SNP [dm3] 3R_7477508_SNP [dm6]	T	G	6.690e^-4	0.929	INTERGENIC
2L	9847564	2L_9847564_SNP [dm3] 2L_9847564_SNP [dm6]	T	C	6.692e^-4	0.929	UPSTREAM CR43766 INTRON nAChRalpha6
X	9467675	X_9467675_SNP [dm3] X_9573642_SNP [dm6]	A	G	6.695e^-4	0.929	SYNONYMOUS_CODING CG32699
2R	16982642	2R_16982642_SNP [dm3] 2R_21095137_SNP [dm6]	G	A	6.704e^-4	0.929	DOWNSTREAM CG4038 INTRON CG34396
3R	15659020	3R_15659020_SNP [dm3] 3R_19833298_SNP [dm6]	G	C	6.710e^-4	0.929	INTRON bnl
2R	16707370	2R_16707370_SNP [dm3] 2R_20819865_SNP [dm6]	T	C	6.711e^-4	0.929	INTERGENIC
2R	16707485	2R_16707485_SNP [dm3] 2R_20819980_SNP [dm6]	G	A	6.711e^-4	0.929	INTERGENIC
2R	16707664	2R_16707664_SNP [dm3] 2R_20820159_SNP [dm6]	C	T	6.711e^-4	0.929	INTERGENIC
2R	16023294	2R_16023294_INS [dm3] 2R_20135789_INS [dm6]	A	AA	6.714e^-4	0.929	INTERGENIC
3L	3446199	3L_3446199_SNP [dm3] 3L_3446199_SNP [dm6]	T	A	6.716e^-4	0.929	INTRON eIF5B
3L	2534934	3L_2534934_SNP [dm3] 3L_2534934_SNP [dm6]	G	A	6.721e^-4	0.929	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2648091	X_2648091_SNP [dm3] X_2754058_SNP [dm6]	G	A	6.721e^-4	0.929	INTRON kirre
2L	19102138	2L_19102138_SNP [dm3] 2L_19102138_SNP [dm6]	T	A	6.728e^-4	0.929	INTRON Lim3 & 2 others
X	13716786	X_13716786_SNP [dm3] X_13822753_SNP [dm6]	A	C	6.728e^-4	0.929	UPSTREAM Nup93-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13716788	X_13716788_SNP [dm3] X_13822755_SNP [dm6]	C	T	6.728e^-4	0.929	UPSTREAM Nup93-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12600804	3L_12600804_SNP [dm3] 3L_12607704_SNP [dm6]	A	T	6.730e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12600805	3L_12600805_SNP [dm3] 3L_12607705_SNP [dm6]	A	G	6.730e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20197857	2R_20197857_SNP [dm3] 2R_24310334_SNP [dm6]	C	T	6.741e^-4	0.929	INTRON betaTub60D
3L	17740611	3L_17740611_SNP [dm3] 3L_17747511_SNP [dm6]	A	C	6.751e^-4	0.929	UPSTREAM CG6034 INTRON Ccn
3L	2824812	3L_2824812_INS [dm3] 3L_2824812_INS [dm6]	C	CC	6.757e^-4	0.929	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2682198	2R_2682198_SNP [dm3] 2R_6794693_SNP [dm6]	A	C	6.784e^-4	0.929	INTRON Epac	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8907784	2R_8907784_SNP [dm3] 2R_13020279_SNP [dm6]	A	G	6.813e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	19274395	2R_19274395_SNP [dm3] 2R_23386872_SNP [dm6]	T	A	6.814e^-4	0.929	UPSTREAM eIF2B-delta & 1 other INTRON eIF2B-delta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8082037	X_8082037_SNP [dm3] X_8188004_SNP [dm6]	C	T	6.822e^-4	0.929	INTRON sdt
2L	1978438	2L_1978438_SNP [dm3] 2L_1978438_SNP [dm6]	A	G	6.822e^-4	0.929	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12284093	2L_12284093_SNP [dm3] 2L_12284093_SNP [dm6]	G	T	6.824e^-4	0.929	INTRON aret
2L	12284105	2L_12284105_SNP [dm3] 2L_12284105_SNP [dm6]	A	G	6.824e^-4	0.929	INTRON aret
2L	11931815	2L_11931815_SNP [dm3] 2L_11931815_SNP [dm6]	A	G	6.833e^-4	0.929	INTERGENIC
3L	6633195	3L_6633195_SNP [dm3] 3L_6640095_SNP [dm6]	T	C	6.837e^-4	0.929	UPSTREAM CR45238 INTERGENIC
2L	7944140	2L_7944140_SNP [dm3] 2L_7944140_SNP [dm6]	A	G	6.838e^-4	0.929	INTRON Snoo
X	6945611	X_6945611_SNP [dm3] X_7051578_SNP [dm6]	A	T	6.841e^-4	0.929	INTRON CG12541
2L	1229149	2L_1229149_SNP [dm3] 2L_1229149_SNP [dm6]	G	C	6.859e^-4	0.929	SYNONYMOUS_CODING CG42329
X	15359441	X_15359441_SNP [dm3] X_15465408_SNP [dm6]	G	A	6.868e^-4	0.929	UTR_5_PRIME CG6299 UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other
3R	6517794	3R_6517794_INS [dm3] 3R_10692072_INS [dm6]	T	TT	6.877e^-4	0.929	INTRON Skeletor	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17718313	3L_17718313_SNP [dm3] 3L_17725213_SNP [dm6]	G	T	6.878e^-4	0.929	SYNONYMOUS_CODING CG6052 INTRON Ccn	TF binding site mE1_TFBS_HSA
3L	3439161	3L_3439161_SNP [dm3] 3L_3439161_SNP [dm6]	A	G	6.884e^-4	0.929	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15321159	2R_15321159_SNP [dm3] 2R_19433654_SNP [dm6]	A	C	6.893e^-4	0.929	INTRON Fak	TF binding site mE1_TFBS_inv
3L	22970678	3L_22970678_SNP [dm3] 3L_22977578_SNP [dm6]	C	G	6.893e^-4	0.929	INTERGENIC
X	12594036	X_12594036_SNP [dm3] X_12700003_SNP [dm6]	C	T	6.894e^-4	0.929	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12594050	X_12594050_INS [dm3] X_12700017_INS [dm6]	A	AG	6.894e^-4	0.929	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2921006	3L_2921006_SNP [dm3] 3L_2921006_SNP [dm6]	T	C	6.908e^-4	0.929	INTRON Shab
3R	18595583	3R_18595583_SNP [dm3] 3R_22769861_SNP [dm6]	T	A	6.916e^-4	0.929	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
3R	14176682	3R_14176682_SNP [dm3] 3R_18350960_SNP [dm6]	G	C	6.937e^-4	0.929	INTRON CG15803
2L	12212794	2L_12212794_SNP [dm3] 2L_12212794_SNP [dm6]	C	T	6.949e^-4	0.929	INTRON aret
2L	2692031	2L_2692031_SNP [dm3] 2L_2692031_SNP [dm6]	C	T	6.951e^-4	0.929	INTRON CG31690
3L	8639580	3L_8639580_SNP [dm3] 3L_8646480_SNP [dm6]	G	C	6.973e^-4	0.929	NON_SYNONYMOUS_CODING CG13305 UPSTREAM Pex7 DOWNSTREAM Arr2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11525232	2R_11525232_SNP [dm3] 2R_15637727_SNP [dm6]	C	T	6.987e^-4	0.929	INTRON CG42524
3R	25095068	3R_25095068_SNP [dm3] 3R_29269346_SNP [dm6]	G	C	6.991e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25095102	3R_25095102_SNP [dm3] 3R_29269380_SNP [dm6]	C	A	6.991e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	18877151	X_18877151_SNP [dm3] X_18983118_SNP [dm6]	C	A	6.994e^-4	0.929	INTRON CG43759
3L	8575745	3L_8575745_SNP [dm3] 3L_8582645_SNP [dm6]	T	A	6.998e^-4	0.929	UPSTREAM CG43078 INTRON CG43078
3L	7820420	3L_7820420_SNP [dm3] 3L_7827320_SNP [dm6]	T	A	7.005e^-4	0.929	INTRON Pdp1
3R	14469755	3R_14469755_SNP [dm3] 3R_18644033_SNP [dm6]	A	T	7.007e^-4	0.929	INTRON qin
2L	2503312	2L_2503312_SNP [dm3] 2L_2503312_SNP [dm6]	T	C	7.019e^-4	0.929	INTERGENIC
X	5969662	X_5969662_SNP [dm3] X_6075629_SNP [dm6]	T	C	7.035e^-4	0.929	UPSTREAM Tsp5D DOWNSTREAM CG4666 INTERGENIC
X	16234587	X_16234587_SNP [dm3] X_16340554_SNP [dm6]	C	T	7.041e^-4	0.929	UTR_3_PRIME Dsp1 DOWNSTREAM Dsp1
X	9487549	X_9487549_SNP [dm3] X_9593516_SNP [dm6]	C	T	7.042e^-4	0.929	INTERGENIC
3L	7431730	3L_7431730_SNP [dm3] 3L_7438630_SNP [dm6]	T	C	7.044e^-4	0.929	INTRON CG42458 & 1 other	TF binding site mE1_TFBS_inv
2L	9646922	2L_9646922_SNP [dm3] 2L_9646922_SNP [dm6]	A	C	7.052e^-4	0.929	INTRON Apoltp
3L	7812333	3L_7812333_SNP [dm3] 3L_7819233_SNP [dm6]	G	T	7.085e^-4	0.929	INTRON Pdp1	TF binding site BDTNP1_TFBS_z
2R	18539941	2R_18539941_SNP [dm3] 2R_22652436_SNP [dm6]	T	C	7.089e^-4	0.929	UTR_3_PRIME nsr DOWNSTREAM Cyp6d2 & 1 other
2R	18539945	2R_18539945_SNP [dm3] 2R_22652440_SNP [dm6]	C	A	7.089e^-4	0.929	UTR_3_PRIME nsr DOWNSTREAM Cyp6d2 & 1 other
2L	7957859	2L_7957859_SNP [dm3] 2L_7957859_SNP [dm6]	A	T	7.091e^-4	0.929	INTRON Snoo
2L	11229927	2L_11229927_INS [dm3] 2L_11229927_INS [dm6]	T	TTCT	7.093e^-4	0.929	INTRON ab
2L	11931726	2L_11931726_SNP [dm3] 2L_11931726_SNP [dm6]	A	T	7.116e^-4	0.929	INTERGENIC
3R	13678119	3R_13678119_SNP [dm3] 3R_17852397_SNP [dm6]	G	T	7.129e^-4	0.929	SYNONYMOUS_CODING tinc
3L	3141948	3L_3141948_SNP [dm3] 3L_3141948_SNP [dm6]	A	G	7.133e^-4	0.929	INTRON CG11537	TF binding site mE1_TFBS_HSA
2L	15473934	2L_15473934_SNP [dm3] 2L_15473934_SNP [dm6]	G	T	7.142e^-4	0.929	INTERGENIC	regulatory region REDfly_CRMs
3R	11074919	3R_11074919_DEL [dm3] 3R_15249197_DEL [dm6]	AATACAAATA	A	7.149e^-4	0.929	UPSTREAM CG42404 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	15252573	3R_15252573_SNP [dm3] 3R_19426851_SNP [dm6]	T	C	7.165e^-4	0.929	INTRON CG31221
2L	12143706	2L_12143706_SNP [dm3] 2L_12143706_SNP [dm6]	T	C	7.176e^-4	0.929	INTRON CG31760
2L	8750335	2L_8750335_SNP [dm3] 2L_8750335_SNP [dm6]	T	A	7.194e^-4	0.929	INTERGENIC
X	12998650	X_12998650_SNP [dm3] X_13104617_SNP [dm6]	C	G	7.209e^-4	0.929	INTRON CG43313
X	18883704	X_18883704_SNP [dm3] X_18989671_SNP [dm6]	T	A	7.214e^-4	0.929	INTRON CG43759
3L	12605965	3L_12605965_SNP [dm3] 3L_12612865_SNP [dm6]	A	G	7.218e^-4	0.929	INTRON caup
3L	12600860	3L_12600860_SNP [dm3] 3L_12607760_SNP [dm6]	G	A	7.222e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12600880	3L_12600880_SNP [dm3] 3L_12607780_SNP [dm6]	C	A	7.222e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12600901	3L_12600901_SNP [dm3] 3L_12607801_SNP [dm6]	A	G	7.222e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	27359555	3R_27359555_SNP [dm3] 3R_31533833_SNP [dm6]	T	C	7.223e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_sens
3R	26571827	3R_26571827_SNP [dm3] 3R_30746105_SNP [dm6]	A	G	7.225e^-4	0.929	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
2R	15321204	2R_15321204_SNP [dm3] 2R_19433699_SNP [dm6]	T	A	7.231e^-4	0.929	SPLICE_SITE_REGION Fak INTRON Fak	TF binding site mE1_TFBS_inv
2R	13682853	2R_13682853_SNP [dm3] 2R_17795348_SNP [dm6]	G	C	7.248e^-4	0.929	NON_SYNONYMOUS_CODING Dhit	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	11391888	2L_11391888_SNP [dm3] 2L_11391888_SNP [dm6]	A	T	7.262e^-4	0.929	INTRON CR43681	regulatory region REDfly_CRMs
2R	15712245	2R_15712245_SNP [dm3] 2R_19824740_SNP [dm6]	G	A	7.280e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	17939332	2L_17939332_SNP [dm3] 2L_17939332_SNP [dm6]	C	T	7.299e^-4	0.929	EXON CR44399
3R	14469696	3R_14469696_SNP [dm3] 3R_18643974_SNP [dm6]	G	A	7.307e^-4	0.929	INTRON qin
2R	11644354	2R_11644354_SNP [dm3] 2R_15756849_SNP [dm6]	G	C	7.307e^-4	0.929	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15366398	2R_15366398_SNP [dm3] 2R_19478893_SNP [dm6]	A	T	7.308e^-4	0.929	INTRON par-1
3R	25244639	3R_25244639_SNP [dm3] 3R_29418917_SNP [dm6]	G	A	7.310e^-4	0.929	INTRON Ptp99A
3L	9019849	3L_9019849_SNP [dm3] 3L_9026749_SNP [dm6]	A	G	7.315e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	4243960	2L_4243960_SNP [dm3] 2L_4243960_SNP [dm6]	C	A	7.316e^-4	0.929	INTERGENIC
2L	2664342	2L_2664342_SNP [dm3] 2L_2664342_SNP [dm6]	C	A	7.360e^-4	0.929	UPSTREAM CG9879 INTERGENIC
3L	7812311	3L_7812311_SNP [dm3] 3L_7819211_SNP [dm6]	C	G	7.392e^-4	0.929	INTRON Pdp1	TF binding site BDTNP1_TFBS_z
3L	10024170	3L_10024170_SNP [dm3] 3L_10031070_SNP [dm6]	C	A	7.395e^-4	0.929	UPSTREAM CR45155 INTRON dpr6
2L	15163107	2L_15163107_SNP [dm3] 2L_15163107_SNP [dm6]	C	T	7.400e^-4	0.929	UTR_3_PRIME CG4168
2L	1956119	2L_1956119_SNP [dm3] 2L_1956119_SNP [dm6]	T	C	7.402e^-4	0.929	INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_GATAe
2L	1956135	2L_1956135_SNP [dm3] 2L_1956135_SNP [dm6]	T	C	7.402e^-4	0.929	INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_GATAe
3L	4118944	3L_4118944_SNP [dm3] 3L_4118944_SNP [dm6]	A	C	7.402e^-4	0.929	INTRON Chd64
3L	4118967	3L_4118967_SNP [dm3] 3L_4118967_SNP [dm6]	A	T	7.402e^-4	0.929	INTRON Chd64
3L	4118974	3L_4118974_SNP [dm3] 3L_4118974_SNP [dm6]	G	A	7.402e^-4	0.929	INTRON Chd64
3L	4118998	3L_4118998_SNP [dm3] 3L_4118998_SNP [dm6]	T	C	7.402e^-4	0.929	INTRON Chd64
3R	24100366	3R_24100366_DEL [dm3] 3R_28274644_DEL [dm6]	ATAA	A	7.403e^-4	0.929	INTERGENIC
3R	13456946	3R_13456946_SNP [dm3] 3R_17631224_SNP [dm6]	G	T	7.404e^-4	0.929	UPSTREAM tRNA:CR31573 & 1 other INTRON CG43175	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	10993824	2R_10993824_SNP [dm3] 2R_15106319_SNP [dm6]	T	C	7.429e^-4	0.929	INTERGENIC
3L	12538827	3L_12538827_SNP [dm3] 3L_12545727_SNP [dm6]	A	T	7.430e^-4	0.929	INTRON sowah
3L	12596932	3L_12596932_SNP [dm3] 3L_12603832_SNP [dm6]	A	T	7.430e^-4	0.929	INTERGENIC
3L	12597076	3L_12597076_SNP [dm3] 3L_12603976_SNP [dm6]	T	C	7.430e^-4	0.929	INTERGENIC
2R	4657320	2R_4657320_DEL [dm3] 2R_8769815_DEL [dm6]	GCCTTACGAAG...	G	7.446e^-4	0.929	INTERGENIC
2R	4623039	2R_4623039_SNP [dm3] 2R_8735534_SNP [dm6]	C	A	7.453e^-4	0.929	UPSTREAM CG8740 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	15008136	2L_15008136_SNP [dm3] 2L_15008136_SNP [dm6]	A	C	7.491e^-4	0.929	SYNONYMOUS_CODING NC2beta UPSTREAM l_2_35Be DOWNSTREAM l_2_35Bc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18250827	X_18250827_SNP [dm3] X_18356794_SNP [dm6]	C	T	7.493e^-4	0.929	UPSTREAM CG6123 INTERGENIC	transposable element FlyBase
2L	3268212	2L_3268212_SNP [dm3] 2L_3268212_SNP [dm6]	T	C	7.495e^-4	0.929	UPSTREAM CR44484 INTERGENIC
2L	3268215	2L_3268215_SNP [dm3] 2L_3268215_SNP [dm6]	C	G	7.495e^-4	0.929	UPSTREAM CR44484 INTERGENIC
3R	13519782	3R_13519782_SNP [dm3] 3R_17694060_SNP [dm6]	G	A	7.513e^-4	0.929	INTRON osa	TF binding site mE1_TFBS_cad
X	3816881	X_3816881_SNP [dm3] X_3922848_SNP [dm6]	G	T	7.526e^-4	0.929	INTRON CG42541
3R	9376362	3R_9376362_SNP [dm3] 3R_13550640_SNP [dm6]	G	A	7.529e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9799968	2L_9799968_SNP [dm3] 2L_9799968_SNP [dm6]	C	A	7.533e^-4	0.929	INTRON nAChRalpha6
3L	17580232	3L_17580232_SNP [dm3] 3L_17587132_SNP [dm6]	T	C	7.536e^-4	0.929	INTRON Eip74EF
3L	903023	3L_903023_SNP [dm3] 3L_903023_SNP [dm6]	C	T	7.548e^-4	0.929	SYNONYMOUS_CODING CG13905	TF binding site mE1_TFBS_sens
2L	5342686	2L_5342686_SNP [dm3] 2L_5342686_SNP [dm6]	T	C	7.574e^-4	0.929	UPSTREAM CG12512 INTERGENIC
3R	13518966	3R_13518966_SNP [dm3] 3R_17693244_SNP [dm6]	C	T	7.580e^-4	0.929	SYNONYMOUS_CODING osa	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13521494	3R_13521494_SNP [dm3] 3R_17695772_SNP [dm6]	T	C	7.580e^-4	0.929	INTRON osa
2R	9749022	2R_9749022_SNP [dm3] 2R_13861517_SNP [dm6]	C	A	7.594e^-4	0.929	UPSTREAM CG13344 INTRON CG16935	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2L	21331175	2L_21331175_SNP [dm3] 2L_21331175_SNP [dm6]	T	C	7.595e^-4	0.929	UPSTREAM dimm INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11848799	2R_11848799_SNP [dm3] 2R_15961294_SNP [dm6]	T	C	7.595e^-4	0.929	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18888609	X_18888609_SNP [dm3] X_18994576_SNP [dm6]	C	A	7.599e^-4	0.929	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17275368	X_17275368_SNP [dm3] X_17381335_SNP [dm6]	T	C	7.614e^-4	0.929	INTERGENIC
3L	2722335	3L_2722335_SNP [dm3] 3L_2722335_SNP [dm6]	G	A	7.620e^-4	0.929	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19481385	3R_19481385_SNP [dm3] 3R_23655663_SNP [dm6]	G	C	7.626e^-4	0.929	INTRON CG31145
X	16171919	X_16171919_SNP [dm3] X_16277886_SNP [dm6]	T	C	7.631e^-4	0.929	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3855563	2L_3855563_DEL [dm3] 2L_3855563_DEL [dm6]	TC	T	7.632e^-4	0.929	UPSTREAM CR45449 DOWNSTREAM CR45450 INTERGENIC
3L	12102684	3L_12102684_INS [dm3] 3L_12109584_INS [dm6]	G	GG	7.643e^-4	0.929	INTERGENIC
2L	12372894	2L_12372894_SNP [dm3] 2L_12372894_SNP [dm6]	T	C	7.645e^-4	0.929	INTRON bru-2
2L	7914719	2L_7914719_SNP [dm3] 2L_7914719_SNP [dm6]	T	C	7.655e^-4	0.929	INTRON Snoo	TF binding site BDTNP1_TFBS_twi
2R	18778103	2R_18778103_SNP [dm3] 2R_22890580_SNP [dm6]	A	G	7.657e^-4	0.929	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
2R	15430459	2R_15430459_SNP [dm3] 2R_19542954_SNP [dm6]	C	T	7.658e^-4	0.929	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14649739	3R_14649739_SNP [dm3] 3R_18824017_SNP [dm6]	A	C	7.664e^-4	0.929	INTRON CG18208
2R	18220968	2R_18220968_SNP [dm3] 2R_22333463_SNP [dm6]	G	T	7.676e^-4	0.929	UTR_3_PRIME CG34208 DOWNSTREAM Liprin-gamma & 1 other
2L	16235794	2L_16235794_SNP [dm3] 2L_16235794_SNP [dm6]	G	A	7.679e^-4	0.929	SYNONYMOUS_CODING CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16235797	2L_16235797_SNP [dm3] 2L_16235797_SNP [dm6]	A	G	7.679e^-4	0.929	SYNONYMOUS_CODING CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3814160	3L_3814160_SNP [dm3] 3L_3814160_SNP [dm6]	T	C	7.690e^-4	0.929	UPSTREAM Scsalpha DOWNSTREAM CR43932 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2R	18778115	2R_18778115_SNP [dm3] 2R_22890592_SNP [dm6]	C	A	7.694e^-4	0.929	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
2R	18778589	2R_18778589_SNP [dm3] 2R_22891066_SNP [dm6]	A	G	7.694e^-4	0.929	SPLICE_SITE_REGION MED23 INTRON MED23	TF binding site mE1_TFBS_cad
2R	13648581	2R_13648581_SNP [dm3] 2R_17761076_SNP [dm6]	A	G	7.711e^-4	0.929	UTR_5_PRIME CG5009 DOWNSTREAM HLH54F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18774581	2R_18774581_SNP [dm3] 2R_22887058_SNP [dm6]	T	G	7.714e^-4	0.929	SYNONYMOUS_CODING asrij UPSTREAM CG3499 DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	11931953	2L_11931953_SNP [dm3] 2L_11931953_SNP [dm6]	C	T	7.722e^-4	0.929	INTERGENIC
X	20436947	X_20436947_SNP [dm3] X_20565920_SNP [dm6]	C	T	7.728e^-4	0.929	SYNONYMOUS_CODING RunxB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15696960	2R_15696960_DEL [dm3] 2R_19809455_DEL [dm6]	TCTTATTGCATTT...	A	7.741e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11931854	2L_11931854_SNP [dm3] 2L_11931854_SNP [dm6]	A	C	7.753e^-4	0.929	INTERGENIC
2L	11231400	2L_11231400_SNP [dm3] 2L_11231400_SNP [dm6]	T	G	7.753e^-4	0.929	INTRON ab
3R	10247658	3R_10247658_SNP [dm3] 3R_14421936_SNP [dm6]	C	G	7.763e^-4	0.929	DOWNSTREAM natalisin INTRON cv-c EXON CR44176
3R	10247659	3R_10247659_SNP [dm3] 3R_14421937_SNP [dm6]	A	G	7.763e^-4	0.929	DOWNSTREAM natalisin INTRON cv-c EXON CR44176
2R	5444062	2R_5444062_SNP [dm3] 2R_9556557_SNP [dm6]	T	G	7.768e^-4	0.929	INTERGENIC
X	18883820	X_18883820_SNP [dm3] X_18989787_SNP [dm6]	C	A	7.775e^-4	0.929	INTRON CG43759
3L	1197432	3L_1197432_SNP [dm3] 3L_1197432_SNP [dm6]	C	T	7.786e^-4	0.929	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10189582	3L_10189582_SNP [dm3] 3L_10196482_SNP [dm6]	G	T	7.791e^-4	0.929	INTRON ect	TF binding site mE1_TFBS_chinmo
2L	17200905	2L_17200905_SNP [dm3] 2L_17200905_SNP [dm6]	G	A	7.813e^-4	0.929	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
2L	17200914	2L_17200914_SNP [dm3] 2L_17200914_SNP [dm6]	G	A	7.813e^-4	0.929	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
X	19015398	X_19015398_SNP [dm3] X_19121365_SNP [dm6]	G	A	7.813e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15480037	3R_15480037_SNP [dm3] 3R_19654315_SNP [dm6]	C	T	7.817e^-4	0.929	SYNONYMOUS_CODING CG6184	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2824937	3L_2824937_SNP [dm3] 3L_2824937_SNP [dm6]	A	T	7.825e^-4	0.929	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2825067	3L_2825067_SNP [dm3] 3L_2825067_SNP [dm6]	T	C	7.825e^-4	0.929	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3727681	3R_3727681_SNP [dm3] 3R_7901959_SNP [dm6]	A	T	7.838e^-4	0.929	DOWNSTREAM wtrw INTRON mRpS9
2L	3804278	2L_3804278_SNP [dm3] 2L_3804278_SNP [dm6]	G	C	7.844e^-4	0.929	INTRON Reph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	15696957	2R_15696957_SNP [dm3] 2R_19809452_SNP [dm6]	T	A	7.883e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14580540	2R_14580540_SNP [dm3] 2R_18693035_SNP [dm6]	C	T	7.887e^-4	0.929	INTRON Sik3
3L	10646940	3L_10646940_SNP [dm3] 3L_10653840_SNP [dm6]	C	T	7.888e^-4	0.929	INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	18598524	2R_18598524_SNP [dm3] 2R_22711019_SNP [dm6]	C	T	7.898e^-4	0.929	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275	TF binding site mE1_TFBS_sens
2R	18598527	2R_18598527_SNP [dm3] 2R_22711022_SNP [dm6]	G	C	7.898e^-4	0.929	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275	TF binding site mE1_TFBS_sens
3R	14649764	3R_14649764_SNP [dm3] 3R_18824042_SNP [dm6]	T	A	7.900e^-4	0.929	INTRON CG18208
2L	2256564	2L_2256564_SNP [dm3] 2L_2256564_SNP [dm6]	T	C	7.904e^-4	0.929	INTERGENIC
2L	2256573	2L_2256573_SNP [dm3] 2L_2256573_SNP [dm6]	T	A	7.904e^-4	0.929	INTERGENIC
2L	2256575	2L_2256575_SNP [dm3] 2L_2256575_SNP [dm6]	T	A	7.904e^-4	0.929	INTERGENIC
2L	2256582	2L_2256582_SNP [dm3] 2L_2256582_SNP [dm6]	G	A	7.904e^-4	0.929	INTERGENIC
2R	8628946	2R_8628946_SNP [dm3] 2R_12741441_SNP [dm6]	G	C	7.911e^-4	0.929	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5797121	3L_5797121_SNP [dm3] 3L_5804021_SNP [dm6]	A	G	7.913e^-4	0.929	START_GAINED CG42272 UTR_5_PRIME CG42272 INTRON S6k & 1 other	TF binding site BDTNP1_TFBS_twi
3L	10686305	3L_10686305_SNP [dm3] 3L_10693205_SNP [dm6]	T	C	7.919e^-4	0.929	UTR_3_PRIME CG6463 UPSTREAM CG33493 DOWNSTREAM CG11811	TF binding site mE1_TFBS_sens
2L	11931798	2L_11931798_DEL [dm3] 2L_11931798_DEL [dm6]	ACATAGTATTTCTA...	A	7.923e^-4	0.929	INTERGENIC
X	8047334	X_8047334_SNP [dm3] X_8153301_SNP [dm6]	T	C	7.940e^-4	0.929	SYNONYMOUS_CODING CG18262	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

daughters3 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results