DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.678e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01798

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	2.7305	0.0984

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1830 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	14748016	X_14748016_SNP [dm3] X_14853983_SNP [dm6]	C	A	3.006e^-6	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2R	6622403	2R_6622403_SNP [dm3] 2R_10734898_SNP [dm6]	C	T	3.113e^-6	0.787	UPSTREAM CG7220 INTRON CG7220
2L	5459601	2L_5459601_SNP [dm3] 2L_5459601_SNP [dm6]	T	C	3.393e^-6	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14748120	X_14748120_SNP [dm3] X_14854087_SNP [dm6]	A	G	3.515e^-6	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748327	X_14748327_SNP [dm3] X_14854294_SNP [dm6]	A	T	3.515e^-6	0.787	DOWNSTREAM CG9519 INTRON Flo2
2R	6622249	2R_6622249_INS [dm3] 2R_10734744_INS [dm6]	A	AA	6.878e^-6	0.787	UPSTREAM CG7220 INTRON CG7220
2R	6622252	2R_6622252_MNP [dm3] 2R_10734747_MNP [dm6]	TAC	GTA	6.878e^-6	0.787	UPSTREAM CG7220 INTRON CG7220
2R	6622259	2R_6622259_SNP [dm3] 2R_10734754_SNP [dm6]	C	G	6.878e^-6	0.787	UPSTREAM CG7220 INTRON CG7220
2R	10529846	2R_10529846_SNP [dm3] 2R_14642341_SNP [dm6]	T	G	6.891e^-6	0.787	INTERGENIC
2R	10529851	2R_10529851_SNP [dm3] 2R_14642346_SNP [dm6]	A	G	6.891e^-6	0.787	INTERGENIC
X	14748166	X_14748166_SNP [dm3] X_14854133_SNP [dm6]	G	T	8.915e^-6	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748179	X_14748179_SNP [dm3] X_14854146_SNP [dm6]	A	T	8.915e^-6	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748180	X_14748180_SNP [dm3] X_14854147_SNP [dm6]	C	T	8.915e^-6	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14747991	X_14747991_SNP [dm3] X_14853958_SNP [dm6]	T	C	9.603e^-6	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748377	X_14748377_SNP [dm3] X_14854344_SNP [dm6]	T	C	9.930e^-6	0.787	UTR_3_PRIME CG9519 INTRON Flo2
X	14747941	X_14747941_SNP [dm3] X_14853908_SNP [dm6]	T	A	1.057e^-5	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14747743	X_14747743_SNP [dm3] X_14853710_SNP [dm6]	A	G	1.102e^-5	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3R	19204995	3R_19204995_SNP [dm3] 3R_23379273_SNP [dm6]	A	G	1.217e^-5	0.787	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2908434	X_2908434_SNP [dm3] X_3014401_SNP [dm6]	G	A	1.250e^-5	0.787	INTRON kirre
3L	11925572	3L_11925572_SNP [dm3] 3L_11932472_SNP [dm6]	T	G	1.307e^-5	0.787	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26077306	3R_26077306_SNP [dm3] 3R_30251584_SNP [dm6]	A	G	1.344e^-5	0.787	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	5483492	X_5483492_SNP [dm3] X_5589459_SNP [dm6]	G	A	1.368e^-5	0.787	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10915767	3R_10915767_DEL [dm3] 3R_15090045_DEL [dm6]	ATAGATTCAATTCTACA...	A	1.379e^-5	0.787	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14748028	X_14748028_SNP [dm3] X_14853995_SNP [dm6]	G	T	1.400e^-5	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3R	11900713	3R_11900713_SNP [dm3] 3R_16074991_SNP [dm6]	A	T	1.416e^-5	0.787	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17926749	2R_17926749_SNP [dm3] 2R_22039244_SNP [dm6]	A	G	1.454e^-5	0.787	INTRON CG34370
3R	26077305	3R_26077305_SNP [dm3] 3R_30251583_SNP [dm6]	A	T	1.684e^-5	0.787	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	18083332	3L_18083332_SNP [dm3] 3L_18090232_SNP [dm6]	T	G	1.687e^-5	0.787	INTRON CG13698
3L	7449822	3L_7449822_SNP [dm3] 3L_7456722_SNP [dm6]	A	G	1.767e^-5	0.787	SYNONYMOUS_CODING ppk26
3L	7449825	3L_7449825_SNP [dm3] 3L_7456725_SNP [dm6]	C	T	1.767e^-5	0.787	SYNONYMOUS_CODING ppk26
X	14746199	X_14746199_SNP [dm3] X_14852166_SNP [dm6]	C	T	1.783e^-5	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18700052	3R_18700052_SNP [dm3] 3R_22874330_SNP [dm6]	G	C	1.814e^-5	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2908522	X_2908522_SNP [dm3] X_3014489_SNP [dm6]	G	A	1.814e^-5	0.787	INTRON kirre
2R	2024404	2R_2024404_INS [dm3] 2R_6136899_INS [dm6]	A	AA	1.890e^-5	0.787	UPSTREAM CG14589 INTRON EcR
3L	11925809	3L_11925809_SNP [dm3] 3L_11932709_SNP [dm6]	A	G	2.065e^-5	0.787	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20286602	X_20286602_SNP [dm3] X_20415575_SNP [dm6]	G	A	2.127e^-5	0.787	UPSTREAM Obp19a INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10137081	3L_10137081_SNP [dm3] 3L_10143981_SNP [dm6]	C	T	2.139e^-5	0.787	INTERGENIC
X	12336269	X_12336269_SNP [dm3] X_12442236_SNP [dm6]	A	G	2.158e^-5	0.787	INTRON Pkcdelta
2L	5462385	2L_5462385_INS [dm3] 2L_5462385_INS [dm6]	T	TCTCGT	2.161e^-5	0.787	INTRON mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	11926621	3L_11926621_SNP [dm3] 3L_11933521_SNP [dm6]	C	G	2.181e^-5	0.787	SPLICE_SITE_REGION byn INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7266250	2R_7266250_SNP [dm3] 2R_11378745_SNP [dm6]	C	A	2.228e^-5	0.787	INTRON Tsp47F
2R	2024692	2R_2024692_SNP [dm3] 2R_6137187_SNP [dm6]	T	A	2.240e^-5	0.787	UPSTREAM CG14589 INTRON EcR
3R	20377587	3R_20377587_SNP [dm3] 3R_24551865_SNP [dm6]	T	C	2.321e^-5	0.787	INTRON Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15334321	3R_15334321_SNP [dm3] 3R_19508599_SNP [dm6]	G	T	2.361e^-5	0.787	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
2R	14170739	2R_14170739_SNP [dm3] 2R_18283234_SNP [dm6]	A	G	2.484e^-5	0.787	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14170753	2R_14170753_SNP [dm3] 2R_18283248_SNP [dm6]	A	C	2.484e^-5	0.787	SPLICE_SITE_REGION sbb INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2024617	2R_2024617_INS [dm3] 2R_6137112_INS [dm6]	T	TTAT	2.545e^-5	0.787	UPSTREAM CG14589 INTRON EcR
3L	11925983	3L_11925983_SNP [dm3] 3L_11932883_SNP [dm6]	T	C	2.672e^-5	0.787	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13259722	X_13259722_SNP [dm3] X_13365689_SNP [dm6]	T	C	2.789e^-5	0.787	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14747757	X_14747757_SNP [dm3] X_14853724_SNP [dm6]	T	C	2.797e^-5	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2R	17472391	2R_17472391_SNP [dm3] 2R_21584886_SNP [dm6]	C	A	2.912e^-5	0.787	NON_SYNONYMOUS_CODING CG30222 UTR_3_PRIME CG30222
2R	17472400	2R_17472400_SNP [dm3] 2R_21584895_SNP [dm6]	T	C	2.912e^-5	0.787	SYNONYMOUS_CODING CG30222 UTR_3_PRIME CG30222
X	3003793	X_3003793_SNP [dm3] X_3109760_SNP [dm6]	C	T	3.007e^-5	0.787	INTRON kirre
3L	22831215	3L_22831215_SNP [dm3] 3L_22838115_SNP [dm6]	C	A	3.137e^-5	0.787	UTR_3_PRIME CG11226	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	14750834	X_14750834_SNP [dm3] X_14856801_SNP [dm6]	A	T	3.146e^-5	0.787	UPSTREAM CG9519 INTRON Flo2
X	12336300	X_12336300_SNP [dm3] X_12442267_SNP [dm6]	A	T	3.196e^-5	0.787	INTRON Pkcdelta
X	12336260	X_12336260_SNP [dm3] X_12442227_SNP [dm6]	A	C	3.378e^-5	0.787	INTRON Pkcdelta
3L	11388928	3L_11388928_SNP [dm3] 3L_11395828_SNP [dm6]	A	G	3.396e^-5	0.787	DOWNSTREAM CG11726 INTERGENIC
3R	26099225	3R_26099225_SNP [dm3] 3R_30273503_SNP [dm6]	C	G	3.491e^-5	0.787	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	14747963	X_14747963_SNP [dm3] X_14853930_SNP [dm6]	A	T	3.495e^-5	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	2249372	X_2249372_SNP [dm3] X_2355339_SNP [dm6]	A	G	3.549e^-5	0.787	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2L	11609712	2L_11609712_SNP [dm3] 2L_11609712_SNP [dm6]	T	C	3.607e^-5	0.787	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
X	6828122	X_6828122_SNP [dm3] X_6934089_SNP [dm6]	C	G	3.703e^-5	0.787	INTRON CG14431
2R	10529806	2R_10529806_SNP [dm3] 2R_14642301_SNP [dm6]	T	C	3.705e^-5	0.787	INTERGENIC
3L	22839348	3L_22839348_SNP [dm3] 3L_22846248_SNP [dm6]	G	C	3.711e^-5	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12336250	X_12336250_SNP [dm3] X_12442217_SNP [dm6]	A	C	3.892e^-5	0.787	INTRON Pkcdelta
2R	2060042	2R_2060042_SNP [dm3] 2R_6172537_SNP [dm6]	G	A	3.894e^-5	0.787	UPSTREAM tRNA:K2:42Ad DOWNSTREAM tRNA:CR30316 INTERGENIC	regulatory region REDfly_CRMs
2R	10454281	2R_10454281_SNP [dm3] 2R_14566776_SNP [dm6]	G	C	3.926e^-5	0.787	INTRON ttv
2L	16497934	2L_16497934_SNP [dm3] 2L_16497934_SNP [dm6]	T	G	4.019e^-5	0.787	INTRON Tpr2
3R	11901121	3R_11901121_SNP [dm3] 3R_16075399_SNP [dm6]	A	G	4.030e^-5	0.787	SYNONYMOUS_CODING Mhcl INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11359686	3L_11359686_SNP [dm3] 3L_11366586_SNP [dm6]	T	G	4.243e^-5	0.787	DOWNSTREAM CR45036 INTERGENIC	TF binding site mE1_TFBS_inv
2R	6575248	2R_6575248_SNP [dm3] 2R_10687743_SNP [dm6]	A	G	4.258e^-5	0.787	INTRON stan
2R	6575273	2R_6575273_SNP [dm3] 2R_10687768_SNP [dm6]	G	A	4.258e^-5	0.787	INTRON stan
X	14747995	X_14747995_SNP [dm3] X_14853962_SNP [dm6]	G	A	4.353e^-5	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14746220	X_14746220_SNP [dm3] X_14852187_SNP [dm6]	C	G	4.355e^-5	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14746250	X_14746250_SNP [dm3] X_14852217_SNP [dm6]	T	C	4.355e^-5	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	22839638	3L_22839638_SNP [dm3] 3L_22846538_SNP [dm6]	G	C	4.416e^-5	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15309269	3R_15309269_SNP [dm3] 3R_19483547_SNP [dm6]	C	T	4.421e^-5	0.787	INTRON Dys
X	12336255	X_12336255_SNP [dm3] X_12442222_SNP [dm6]	T	C	4.444e^-5	0.787	INTRON Pkcdelta
2R	8177294	2R_8177294_SNP [dm3] 2R_12289789_SNP [dm6]	T	C	4.452e^-5	0.787	UPSTREAM CG42700 INTRON CG42700
2R	8177295	2R_8177295_SNP [dm3] 2R_12289790_SNP [dm6]	T	C	4.452e^-5	0.787	UPSTREAM CG42700 INTRON CG42700
X	14747090	X_14747090_SNP [dm3] X_14853057_SNP [dm6]	A	G	4.800e^-5	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2
3L	19917857	3L_19917857_DEL [dm3] 3L_19924757_DEL [dm6]	TA	G	5.205e^-5	0.787	UPSTREAM Grasp65 DOWNSTREAM CG7770 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	778267	3L_778267_SNP [dm3] 3L_778267_SNP [dm6]	C	T	5.220e^-5	0.787	INTERGENIC
3L	22840382	3L_22840382_SNP [dm3] 3L_22847282_SNP [dm6]	G	T	5.237e^-5	0.787	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19295211	2L_19295211_SNP [dm3] 2L_19295211_SNP [dm6]	A	G	5.291e^-5	0.787	INTERGENIC
3L	14037571	3L_14037571_SNP [dm3] 3L_14044471_SNP [dm6]	T	C	5.342e^-5	0.787	SYNONYMOUS_CODING blue DOWNSTREAM Hsc70Cb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8381886	3L_8381886_SNP [dm3] 3L_8388786_SNP [dm6]	T	A	5.377e^-5	0.787	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad
3R	6721222	3R_6721222_SNP [dm3] 3R_10895500_SNP [dm6]	C	A	5.426e^-5	0.787	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	6721449	3R_6721449_SNP [dm3] 3R_10895727_SNP [dm6]	A	T	5.426e^-5	0.787	UTR_3_PRIME Leash DOWNSTREAM CR45577	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	15333095	3R_15333095_SNP [dm3] 3R_19507373_SNP [dm6]	T	A	5.457e^-5	0.787	INTRON Dys
3R	6725942	3R_6725942_SNP [dm3] 3R_10900220_SNP [dm6]	A	T	5.457e^-5	0.787	INTERGENIC
3R	6711687	3R_6711687_SNP [dm3] 3R_10885965_SNP [dm6]	C	T	5.535e^-5	0.787	UTR_5_PRIME Leash UPSTREAM CG14696	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2565606	X_2565606_SNP [dm3] X_2671573_SNP [dm6]	T	C	5.546e^-5	0.787	INTRON sgg
X	2249375	X_2249375_DEL [dm3] X_2355342_DEL [dm6]	AATT	A	5.634e^-5	0.787	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
X	2565595	X_2565595_SNP [dm3] X_2671562_SNP [dm6]	T	C	5.656e^-5	0.787	INTRON sgg
2R	9728400	2R_9728400_SNP [dm3] 2R_13840895_SNP [dm6]	G	C	5.673e^-5	0.787	NON_SYNONYMOUS_CODING CG6357 DOWNSTREAM Syngr
2R	17297680	2R_17297680_SNP [dm3] 2R_21410175_SNP [dm6]	A	C	5.710e^-5	0.787	INTRON Sdc
3L	4412923	3L_4412923_SNP [dm3] 3L_4412923_SNP [dm6]	G	C	5.786e^-5	0.787	INTRON DOR
2R	8178119	2R_8178119_SNP [dm3] 2R_12290614_SNP [dm6]	A	G	5.817e^-5	0.787	UPSTREAM CG42700 INTRON CG42700
X	14746178	X_14746178_SNP [dm3] X_14852145_SNP [dm6]	A	C	5.836e^-5	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15448855	2R_15448855_SNP [dm3] 2R_19561350_SNP [dm6]	T	G	5.858e^-5	0.787	INTRON sm
3L	10369265	3L_10369265_SNP [dm3] 3L_10376165_SNP [dm6]	C	T	5.908e^-5	0.787	INTERGENIC
3R	6736381	3R_6736381_SNP [dm3] 3R_10910659_SNP [dm6]	T	C	5.926e^-5	0.787	INTERGENIC
3R	6723020	3R_6723020_SNP [dm3] 3R_10897298_SNP [dm6]	T	G	5.966e^-5	0.787	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	6723042	3R_6723042_SNP [dm3] 3R_10897320_SNP [dm6]	T	G	5.966e^-5	0.787	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723062	3R_6723062_SNP [dm3] 3R_10897340_SNP [dm6]	A	T	5.966e^-5	0.787	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723105	3R_6723105_SNP [dm3] 3R_10897383_SNP [dm6]	G	A	5.966e^-5	0.787	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723117	3R_6723117_SNP [dm3] 3R_10897395_SNP [dm6]	C	A	5.966e^-5	0.787	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3R	6723422	3R_6723422_SNP [dm3] 3R_10897700_SNP [dm6]	G	C	5.966e^-5	0.787	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3R	6725863	3R_6725863_SNP [dm3] 3R_10900141_SNP [dm6]	A	T	5.966e^-5	0.787	INTERGENIC
3R	6728775	3R_6728775_SNP [dm3] 3R_10903053_SNP [dm6]	C	T	5.966e^-5	0.787	INTERGENIC
3R	6734973	3R_6734973_SNP [dm3] 3R_10909251_SNP [dm6]	G	A	5.966e^-5	0.787	INTERGENIC
3R	6735382	3R_6735382_SNP [dm3] 3R_10909660_SNP [dm6]	C	A	5.966e^-5	0.787	INTERGENIC
3L	11594864	3L_11594864_SNP [dm3] 3L_11601764_SNP [dm6]	T	C	6.303e^-5	0.787	INTRON CG7368
3L	9793534	3L_9793534_SNP [dm3] 3L_9800434_SNP [dm6]	C	G	6.321e^-5	0.787	UTR_3_PRIME Ilp2 DOWNSTREAM Ilp3 INTRON CG32052
2R	6213515	2R_6213515_INS [dm3] 2R_10326010_INS [dm6]	T	TGT	6.473e^-5	0.787	INTRON CG42732
2L	19295258	2L_19295258_SNP [dm3] 2L_19295258_SNP [dm6]	A	G	6.480e^-5	0.787	INTERGENIC
3L	22840552	3L_22840552_SNP [dm3] 3L_22847452_SNP [dm6]	C	T	6.757e^-5	0.787	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22840557	3L_22840557_SNP [dm3] 3L_22847457_SNP [dm6]	T	A	6.757e^-5	0.787	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12336171	X_12336171_DEL [dm3] X_12442138_DEL [dm6]	TAGTATGTTACAAAGAATTC...	T	6.849e^-5	0.787	INTRON Pkcdelta
3R	17947127	3R_17947127_SNP [dm3] 3R_22121405_SNP [dm6]	C	G	6.863e^-5	0.787	INTRON CG42390
2L	5462422	2L_5462422_SNP [dm3] 2L_5462422_SNP [dm6]	T	A	6.868e^-5	0.787	INTRON mid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	18059342	3L_18059342_SNP [dm3] 3L_18066242_SNP [dm6]	C	T	6.988e^-5	0.787	INTERGENIC
2R	8186438	2R_8186438_SNP [dm3] 2R_12298933_SNP [dm6]	T	C	7.027e^-5	0.787	SYNONYMOUS_STOP CG8850 UTR_3_PRIME CG42700 DOWNSTREAM CG42700
3L	4064248	3L_4064248_SNP [dm3] 3L_4064248_SNP [dm6]	A	T	7.102e^-5	0.787	UTR_3_PRIME dib & 1 other	TF binding site mE1_TFBS_cad
3R	18918337	3R_18918337_SNP [dm3] 3R_23092615_SNP [dm6]	A	T	7.230e^-5	0.787	NON_SYNONYMOUS_CODING CG6726 UTR_5_PRIME CG17110 UPSTREAM CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8961539	2L_8961539_SNP [dm3] 2L_8961539_SNP [dm6]	A	G	7.354e^-5	0.787	SYNONYMOUS_CODING CG9525 UPSTREAM CG32985	TF binding site mE1_TFBS_HSA
2R	6621696	2R_6621696_SNP [dm3] 2R_10734191_SNP [dm6]	A	G	7.356e^-5	0.787	INTRON CG7220
2R	8177177	2R_8177177_SNP [dm3] 2R_12289672_SNP [dm6]	A	G	7.532e^-5	0.787	INTRON CG42700
3L	12503572	3L_12503572_SNP [dm3] 3L_12510472_SNP [dm6]	A	C	7.615e^-5	0.787	SYNONYMOUS_CODING sti
2R	8185395	2R_8185395_SNP [dm3] 2R_12297890_SNP [dm6]	A	C	7.655e^-5	0.787	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
3R	6724270	3R_6724270_SNP [dm3] 3R_10898548_SNP [dm6]	C	A	7.680e^-5	0.787	EXON CR45578	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1078685	3L_1078685_SNP [dm3] 3L_1078685_SNP [dm6]	A	C	7.838e^-5	0.787	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18029073	3L_18029073_SNP [dm3] 3L_18035973_SNP [dm6]	G	A	7.850e^-5	0.787	INTRON Eip75B
X	14748332	X_14748332_DEL [dm3] X_14854299_DEL [dm6]	AGAACTGATAGAACAAAC...	A	7.988e^-5	0.787	DOWNSTREAM CG9519 INTRON Flo2
3L	11752019	3L_11752019_SNP [dm3] 3L_11758919_SNP [dm6]	T	G	8.064e^-5	0.787	INTRON CG6024
X	12438864	X_12438864_SNP [dm3] X_12544831_SNP [dm6]	T	A	8.124e^-5	0.787	INTRON CG43921
2R	9888929	2R_9888929_SNP [dm3] 2R_14001424_SNP [dm6]	C	T	8.151e^-5	0.787	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9888966	2R_9888966_SNP [dm3] 2R_14001461_SNP [dm6]	A	T	8.151e^-5	0.787	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13259685	X_13259685_SNP [dm3] X_13365652_SNP [dm6]	C	T	8.176e^-5	0.787	SYNONYMOUS_CODING Syt12	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14246155	X_14246155_SNP [dm3] X_14352122_SNP [dm6]	T	C	8.336e^-5	0.787	INTRON dpr8
X	17181219	X_17181219_SNP [dm3] X_17287186_SNP [dm6]	G	A	8.384e^-5	0.787	SYNONYMOUS_CODING Fim INTRON CG5445	TF binding site mE1_TFBS_HSA
3R	18917914	3R_18917914_SNP [dm3] 3R_23092192_SNP [dm6]	T	C	8.456e^-5	0.787	SYNONYMOUS_CODING CG6726 UTR_5_PRIME CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad
3R	18917935	3R_18917935_SNP [dm3] 3R_23092213_SNP [dm6]	A	G	8.456e^-5	0.787	SYNONYMOUS_CODING CG6726 UTR_5_PRIME CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad
2R	8185808	2R_8185808_SNP [dm3] 2R_12298303_SNP [dm6]	C	A	8.477e^-5	0.787	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850 & 1 other
2R	8185809	2R_8185809_SNP [dm3] 2R_12298304_SNP [dm6]	T	A	8.477e^-5	0.787	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850 & 1 other
3R	6722870	3R_6722870_SNP [dm3] 3R_10897148_SNP [dm6]	G	A	8.643e^-5	0.787	DOWNSTREAM Leash & 1 other EXON CR45577	TF binding site BDTNP1_TFBS_sna
3L	10138347	3L_10138347_SNP [dm3] 3L_10145247_SNP [dm6]	C	T	8.679e^-5	0.787	INTERGENIC
X	9095176	X_9095176_SNP [dm3] X_9201143_SNP [dm6]	C	T	8.698e^-5	0.787	INTRON su_r_
2L	18079767	2L_18079767_SNP [dm3] 2L_18079767_SNP [dm6]	T	C	8.863e^-5	0.787	INTRON Arr1
3L	11937635	3L_11937635_SNP [dm3] 3L_11944535_SNP [dm6]	G	A	8.887e^-5	0.787	SYNONYMOUS_CODING CG5883
3R	19224292	3R_19224292_DEL [dm3] 3R_23398570_DEL [dm6]	AATGCCACTA	A	8.910e^-5	0.787	DOWNSTREAM CR44323 INTERGENIC
3L	18144818	3L_18144818_SNP [dm3] 3L_18151718_SNP [dm6]	T	G	9.047e^-5	0.787	INTRON CG7330
3R	19655670	3R_19655670_SNP [dm3] 3R_23829948_SNP [dm6]	C	T	9.058e^-5	0.787	INTRON CG34355
2R	18074793	2R_18074793_SNP [dm3] 2R_22187288_SNP [dm6]	C	G	9.217e^-5	0.787	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14927186	3L_14927186_SNP [dm3] 3L_14934086_SNP [dm6]	C	T	9.430e^-5	0.787	INTRON DCX-EMAP
2R	9888840	2R_9888840_SNP [dm3] 2R_14001335_SNP [dm6]	C	A	9.507e^-5	0.787	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8191138	2R_8191138_SNP [dm3] 2R_12303633_SNP [dm6]	T	C	9.523e^-5	0.787	SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2
3L	18006995	3L_18006995_SNP [dm3] 3L_18013895_SNP [dm6]	G	T	9.588e^-5	0.787	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4071675	2R_4071675_SNP [dm3] 2R_8184170_SNP [dm6]	G	A	9.597e^-5	0.787	INTRON LRP1
X	14748323	X_14748323_SNP [dm3] X_14854290_SNP [dm6]	G	A	9.614e^-5	0.787	DOWNSTREAM CG9519 INTRON Flo2
3L	22844112	3L_22844112_SNP [dm3] 3L_22851012_SNP [dm6]	C	T	9.705e^-5	0.787	INTRON CR43426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5522064	2L_5522064_SNP [dm3] 2L_5522064_SNP [dm6]	A	T	9.936e^-5	0.787	DOWNSTREAM cl INTRON CG7371
X	11704754	X_11704754_SNP [dm3] X_11810721_SNP [dm6]	G	A	1.002e^-4	0.787	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18564446	3R_18564446_SNP [dm3] 3R_22738724_SNP [dm6]	A	G	1.011e^-4	0.787	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18564461	3R_18564461_SNP [dm3] 3R_22738739_SNP [dm6]	C	T	1.011e^-4	0.787	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9888912	2R_9888912_SNP [dm3] 2R_14001407_SNP [dm6]	A	G	1.016e^-4	0.787	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25456605	3R_25456605_SNP [dm3] 3R_29630883_SNP [dm6]	T	A	1.028e^-4	0.787	UTR_3_PRIME Dop1R2
3L	11928369	3L_11928369_SNP [dm3] 3L_11935269_SNP [dm6]	T	C	1.033e^-4	0.787	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9964048	2R_9964048_SNP [dm3] 2R_14076543_SNP [dm6]	A	G	1.034e^-4	0.787	INTRON Prosap
2R	15472253	2R_15472253_DEL [dm3] 2R_19584748_DEL [dm6]	ATTTGAGAATATA...	A	1.045e^-4	0.787	INTRON sm
X	19399201	X_19399201_SNP [dm3] X_19505168_SNP [dm6]	A	G	1.046e^-4	0.787	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11822667	3L_11822667_SNP [dm3] 3L_11829567_SNP [dm6]	A	G	1.050e^-4	0.787	SPLICE_SITE_REGION CG7264 INTRON CycA & 1 other
3L	11822670	3L_11822670_SNP [dm3] 3L_11829570_SNP [dm6]	C	G	1.050e^-4	0.787	INTRON CycA & 1 other
3L	11822686	3L_11822686_SNP [dm3] 3L_11829586_SNP [dm6]	G	T	1.050e^-4	0.787	INTRON CycA & 1 other
3L	11822725	3L_11822725_SNP [dm3] 3L_11829625_SNP [dm6]	A	C	1.050e^-4	0.787	SYNONYMOUS_CODING CG7264 INTRON CycA
3L	12219177	3L_12219177_SNP [dm3] 3L_12226077_SNP [dm6]	C	T	1.068e^-4	0.787	INTRON app
3L	12219209	3L_12219209_SNP [dm3] 3L_12226109_SNP [dm6]	C	A	1.068e^-4	0.787	INTRON app
2R	8447629	2R_8447629_SNP [dm3] 2R_12560124_SNP [dm6]	G	A	1.078e^-4	0.787	INTRON fra
2R	19029419	2R_19029419_DEL [dm3] 2R_23141896_DEL [dm6]	GTATATG	G	1.087e^-4	0.787	UPSTREAM Klp59D INTERGENIC
2R	8190945	2R_8190945_SNP [dm3] 2R_12303440_SNP [dm6]	C	T	1.093e^-4	0.787	UTR_3_PRIME SIP2 INTRON SIP2
2R	8193923	2R_8193923_SNP [dm3] 2R_12306418_SNP [dm6]	G	A	1.093e^-4	0.787	UPSTREAM CG17739 & 1 other INTERGENIC
2L	19295226	2L_19295226_SNP [dm3] 2L_19295226_SNP [dm6]	C	T	1.105e^-4	0.787	INTERGENIC
2R	6710694	2R_6710694_SNP [dm3] 2R_10823189_SNP [dm6]	G	C	1.119e^-4	0.787	SYNONYMOUS_CODING CG12343 UPSTREAM CG12325 DOWNSTREAM RpS15Ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14743141	X_14743141_SNP [dm3] X_14849108_SNP [dm6]	C	T	1.121e^-4	0.787	UPSTREAM CG9522 INTRON Flo2
3R	6733147	3R_6733147_SNP [dm3] 3R_10907425_SNP [dm6]	G	A	1.131e^-4	0.787	INTERGENIC
X	6528322	X_6528322_SNP [dm3] X_6634289_SNP [dm6]	A	T	1.134e^-4	0.787	NON_SYNONYMOUS_CODING CG14443 INTRON pigs
2R	14170768	2R_14170768_SNP [dm3] 2R_18283263_SNP [dm6]	A	T	1.148e^-4	0.787	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20497349	X_20497349_SNP [dm3] X_20626322_SNP [dm6]	A	T	1.162e^-4	0.787	INTERGENIC
3L	12069108	3L_12069108_INS [dm3] 3L_12076008_INS [dm6]	G	GCAGTTG	1.180e^-4	0.787	INTRON Sema-5c
3R	3903541	3R_3903541_SNP [dm3] 3R_8077819_SNP [dm6]	A	T	1.192e^-4	0.787	INTRON mAChR-B	TF binding site mE1_TFBS_cad
3R	16348074	3R_16348074_SNP [dm3] 3R_20522352_SNP [dm6]	A	T	1.196e^-4	0.787	INTERGENIC
3R	16348113	3R_16348113_SNP [dm3] 3R_20522391_SNP [dm6]	G	A	1.196e^-4	0.787	INTERGENIC
3R	16348156	3R_16348156_SNP [dm3] 3R_20522434_SNP [dm6]	C	A	1.196e^-4	0.787	INTERGENIC
3R	16348198	3R_16348198_SNP [dm3] 3R_20522476_SNP [dm6]	T	C	1.196e^-4	0.787	INTERGENIC
3L	8327377	3L_8327377_SNP [dm3] 3L_8334277_SNP [dm6]	G	A	1.197e^-4	0.787	INTERGENIC
X	20497291	X_20497291_SNP [dm3] X_20626264_SNP [dm6]	C	T	1.197e^-4	0.787	INTERGENIC
X	20497298	X_20497298_SNP [dm3] X_20626271_SNP [dm6]	C	G	1.197e^-4	0.787	INTERGENIC
X	20497336	X_20497336_SNP [dm3] X_20626309_SNP [dm6]	T	C	1.197e^-4	0.787	INTERGENIC
X	17170009	X_17170009_SNP [dm3] X_17275976_SNP [dm6]	T	A	1.203e^-4	0.787	INTRON f
2R	9119738	2R_9119738_SNP [dm3] 2R_13232233_SNP [dm6]	T	C	1.204e^-4	0.787	SYNONYMOUS_CODING CG4670 DOWNSTREAM fsd	TF binding site mE1_TFBS_cad
X	14088719	X_14088719_SNP [dm3] X_14194686_SNP [dm6]	G	A	1.216e^-4	0.787	NON_SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18079776	2L_18079776_SNP [dm3] 2L_18079776_SNP [dm6]	A	C	1.216e^-4	0.787	INTRON Arr1
2L	18078855	2L_18078855_SNP [dm3] 2L_18078855_SNP [dm6]	C	A	1.219e^-4	0.787	INTRON Arr1	TF binding site mE1_TFBS_chinmo
2L	18078879	2L_18078879_SNP [dm3] 2L_18078879_SNP [dm6]	A	G	1.219e^-4	0.787	INTRON Arr1	TF binding site mE1_TFBS_chinmo
2L	18078882	2L_18078882_SNP [dm3] 2L_18078882_SNP [dm6]	T	C	1.219e^-4	0.787	INTRON Arr1	TF binding site mE1_TFBS_chinmo
2L	18081416	2L_18081416_SNP [dm3] 2L_18081416_SNP [dm6]	C	T	1.228e^-4	0.787	UPSTREAM ninaD DOWNSTREAM Arr1 INTERGENIC
2L	4279057	2L_4279057_SNP [dm3] 2L_4279057_SNP [dm6]	T	C	1.237e^-4	0.787	INTRON Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4279061	2L_4279061_SNP [dm3] 2L_4279061_SNP [dm6]	A	T	1.237e^-4	0.787	INTRON Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6725887	3R_6725887_DEL [dm3] 3R_10900165_DEL [dm6]	TTGGC	AA	1.244e^-4	0.787	INTERGENIC
2L	5462501	2L_5462501_SNP [dm3] 2L_5462501_SNP [dm6]	T	C	1.253e^-4	0.787	INTRON mid	TF binding site BDTNP1_TFBS_dl
2L	6902704	2L_6902704_SNP [dm3] 2L_6902704_SNP [dm6]	T	C	1.253e^-4	0.787	DOWNSTREAM mir-932 INTRON Nlg2
2L	6902712	2L_6902712_SNP [dm3] 2L_6902712_SNP [dm6]	C	A	1.253e^-4	0.787	DOWNSTREAM mir-932 INTRON Nlg2
2R	7369002	2R_7369002_SNP [dm3] 2R_11481497_SNP [dm6]	T	C	1.254e^-4	0.787	INTRON inv
3L	5246175	3L_5246175_SNP [dm3] 3L_5253075_SNP [dm6]	G	C	1.256e^-4	0.787	INTRON shep
2R	16168199	2R_16168199_SNP [dm3] 2R_20280694_SNP [dm6]	A	C	1.256e^-4	0.787	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3L	18849866	3L_18849866_SNP [dm3] 3L_18856766_SNP [dm6]	C	T	1.269e^-4	0.787	UPSTREAM CR45388 INTERGENIC
3L	7926049	3L_7926049_INS [dm3] 3L_7932949_INS [dm6]	T	TT	1.271e^-4	0.787	INTRON syd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8287437	2R_8287437_SNP [dm3] 2R_12399932_SNP [dm6]	C	T	1.276e^-4	0.787	DOWNSTREAM CG30048 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16147078	X_16147078_SNP [dm3] X_16253045_SNP [dm6]	T	C	1.282e^-4	0.787	DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2R	9778080	2R_9778080_SNP [dm3] 2R_13890575_SNP [dm6]	G	T	1.306e^-4	0.787	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_sens
2R	9778107	2R_9778107_SNP [dm3] 2R_13890602_SNP [dm6]	G	A	1.306e^-4	0.787	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_sens
3L	7282799	3L_7282799_SNP [dm3] 3L_7289699_SNP [dm6]	T	G	1.306e^-4	0.787	INTRON unc-13-4A
2L	5726726	2L_5726726_SNP [dm3] 2L_5726726_SNP [dm6]	C	G	1.311e^-4	0.787	UTR_3_PRIME CG14006 DOWNSTREAM CG14006 INTRON CG11030	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8182220	3R_8182220_SNP [dm3] 3R_12356498_SNP [dm6]	T	C	1.319e^-4	0.787	UPSTREAM MBD-R2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	19399342	X_19399342_SNP [dm3] X_19505309_SNP [dm6]	T	C	1.325e^-4	0.787	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	8186583	2R_8186583_SNP [dm3] 2R_12299078_SNP [dm6]	G	A	1.329e^-4	0.787	UTR_3_PRIME CG42700 DOWNSTREAM CG42700 INTRON CG8850
2R	6185006	2R_6185006_SNP [dm3] 2R_10297501_SNP [dm6]	G	A	1.346e^-4	0.787	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	14744343	X_14744343_SNP [dm3] X_14850310_SNP [dm6]	G	A	1.350e^-4	0.787	DOWNSTREAM CG9521 INTRON Flo2
X	14748186	X_14748186_SNP [dm3] X_14854153_SNP [dm6]	G	T	1.351e^-4	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2R	14957973	2R_14957973_SNP [dm3] 2R_19070468_SNP [dm6]	A	G	1.361e^-4	0.787	INTRON 5-HT1A
2R	15477633	2R_15477633_DEL [dm3] 2R_19590128_DEL [dm6]	TT	T	1.362e^-4	0.787	INTRON sm
2R	13391110	2R_13391110_SNP [dm3] 2R_17503605_SNP [dm6]	G	A	1.367e^-4	0.787	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
2L	4305613	2L_4305613_SNP [dm3] 2L_4305613_SNP [dm6]	T	C	1.368e^-4	0.787	UTR_3_PRIME tutl INTRON tutl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10385441	X_10385441_SNP [dm3] X_10491408_SNP [dm6]	G	C	1.378e^-4	0.787	INTRON spri
3R	18913559	3R_18913559_SNP [dm3] 3R_23087837_SNP [dm6]	A	T	1.405e^-4	0.787	INTRON CG13830	TF binding site mE1_TFBS_cad
2R	18074670	2R_18074670_SNP [dm3] 2R_22187165_SNP [dm6]	C	A	1.406e^-4	0.787	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10214082	3R_10214082_SNP [dm3] 3R_14388360_SNP [dm6]	G	A	1.406e^-4	0.787	INTERGENIC
3R	10580254	3R_10580254_SNP [dm3] 3R_14754532_SNP [dm6]	T	A	1.406e^-4	0.787	UPSTREAM CG7362 INTRON jvl
2R	14835543	2R_14835543_SNP [dm3] 2R_18948038_SNP [dm6]	G	A	1.409e^-4	0.787	INTRON sano
X	9095198	X_9095198_DEL [dm3] X_9201165_DEL [dm6]	TGTGAATAGCCATAACTATT...	T	1.417e^-4	0.787	INTRON su_r_
3L	18007050	3L_18007050_SNP [dm3] 3L_18013950_SNP [dm6]	C	A	1.422e^-4	0.787	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	11203841	2L_11203841_SNP [dm3] 2L_11203841_SNP [dm6]	T	A	1.423e^-4	0.787	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25965356	3R_25965356_SNP [dm3] 3R_30139634_SNP [dm6]	A	G	1.429e^-4	0.787	INTRON AdoR
3L	5910833	3L_5910833_SNP [dm3] 3L_5917733_SNP [dm6]	A	G	1.429e^-4	0.787	UPSTREAM CR45167 DOWNSTREAM CG10483 & 1 other INTERGENIC
3R	22910302	3R_22910302_DEL [dm3] 3R_27084580_DEL [dm6]	TAATTGCACC	T	1.440e^-4	0.787	INTRON Cpr97Ea	TF binding site mE1_TFBS_cad
3R	10412967	3R_10412967_SNP [dm3] 3R_14587245_SNP [dm6]	C	G	1.459e^-4	0.787	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22847381	3L_22847381_SNP [dm3] 3L_22854281_SNP [dm6]	A	G	1.464e^-4	0.787	UPSTREAM CG32462 DOWNSTREAM CG32459 & 1 other EXON CR43426	transposable element FlyBase
3L	12557176	3L_12557176_SNP [dm3] 3L_12564076_SNP [dm6]	T	C	1.468e^-4	0.787	INTRON sowah
2L	4162998	2L_4162998_SNP [dm3] 2L_4162998_SNP [dm6]	T	A	1.471e^-4	0.787	INTERGENIC
3L	11930917	3L_11930917_SNP [dm3] 3L_11937817_SNP [dm6]	G	C	1.473e^-4	0.787	NON_SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	7384900	3R_7384900_SNP [dm3] 3R_11559178_SNP [dm6]	C	T	1.474e^-4	0.787	SYNONYMOUS_CODING CG10898 DOWNSTREAM fabp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	19138541	2R_19138541_SNP [dm3] 2R_23251018_SNP [dm6]	G	A	1.474e^-4	0.787	INTERGENIC
3R	16388687	3R_16388687_SNP [dm3] 3R_20562965_SNP [dm6]	C	T	1.490e^-4	0.787	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21901458	X_21901458_SNP [dm3] X_22499622_SNP [dm6]	A	C	1.496e^-4	0.787	DOWNSTREAM l_1_G0196 INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18918124	3R_18918124_SNP [dm3] 3R_23092402_SNP [dm6]	C	T	1.504e^-4	0.787	SYNONYMOUS_CODING CG6726 START_GAINED CG17110 UTR_5_PRIME CG17110 INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13240068	3R_13240068_SNP [dm3] 3R_17414346_SNP [dm6]	T	A	1.513e^-4	0.787	DOWNSTREAM CG42821 INTRON CG42822
2R	13391090	2R_13391090_SNP [dm3] 2R_17503585_SNP [dm6]	C	A	1.524e^-4	0.787	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
3L	11931666	3L_11931666_SNP [dm3] 3L_11938566_SNP [dm6]	A	T	1.524e^-4	0.787	INTRON CG44837	TF binding site BDTNP1_TFBS_dl
X	8097972	X_8097972_SNP [dm3] X_8203939_SNP [dm6]	G	A	1.536e^-4	0.787	INTRON sdt
3L	22839245	3L_22839245_SNP [dm3] 3L_22846145_SNP [dm6]	C	T	1.548e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10194208	3L_10194208_SNP [dm3] 3L_10201108_SNP [dm6]	T	A	1.554e^-4	0.787	INTRON ect
2R	8190897	2R_8190897_SNP [dm3] 2R_12303392_SNP [dm6]	C	T	1.567e^-4	0.787	INTRON SIP2
3L	8381900	3L_8381900_SNP [dm3] 3L_8388800_SNP [dm6]	G	C	1.579e^-4	0.787	NON_SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad
3L	8381971	3L_8381971_SNP [dm3] 3L_8388871_SNP [dm6]	G	A	1.579e^-4	0.787	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8382181	3L_8382181_SNP [dm3] 3L_8389081_SNP [dm6]	T	C	1.579e^-4	0.787	SYNONYMOUS_CODING ImpE1	TF binding site mE1_TFBS_cad
X	22138457	X_22138457_SNP [dm3] X_22736621_SNP [dm6]	C	G	1.599e^-4	0.787	INTRON CR44997
X	2249345	X_2249345_SNP [dm3] X_2355312_SNP [dm6]	T	C	1.611e^-4	0.787	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2L	10639049	2L_10639049_SNP [dm3] 2L_10639049_SNP [dm6]	C	T	1.615e^-4	0.787	UPSTREAM CG7329 & 1 other EXON CR45351
3R	8172771	3R_8172771_SNP [dm3] 3R_12347049_SNP [dm6]	C	A	1.617e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	17094276	2R_17094276_SNP [dm3] 2R_21206771_SNP [dm6]	G	C	1.628e^-4	0.787	INTRON CG44245 & 1 other
2R	2638998	2R_2638998_SNP [dm3] 2R_6751493_SNP [dm6]	C	T	1.628e^-4	0.787	UPSTREAM Eb1 INTRON Eb1
3L	14331829	3L_14331829_SNP [dm3] 3L_14338729_SNP [dm6]	A	C	1.628e^-4	0.787	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20496655	X_20496655_INS [dm3] X_20625628_INS [dm6]	C	CT	1.642e^-4	0.787	INTERGENIC
3L	22847103	3L_22847103_SNP [dm3] 3L_22854003_SNP [dm6]	A	C	1.644e^-4	0.787	UPSTREAM CG32462 DOWNSTREAM CG32459 & 1 other EXON CR43426
2R	17314360	2R_17314360_SNP [dm3] 2R_21426855_SNP [dm6]	A	T	1.666e^-4	0.787	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2907046	X_2907046_SNP [dm3] X_3013013_SNP [dm6]	G	A	1.666e^-4	0.787	INTRON kirre
X	2907051	X_2907051_SNP [dm3] X_3013018_SNP [dm6]	G	A	1.666e^-4	0.787	INTRON kirre
2L	18051777	2L_18051777_SNP [dm3] 2L_18051777_SNP [dm6]	G	T	1.669e^-4	0.787	INTRON rdo
2L	18070999	2L_18070999_SNP [dm3] 2L_18070999_SNP [dm6]	A	T	1.669e^-4	0.787	DOWNSTREAM rdo INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7266275	2R_7266275_SNP [dm3] 2R_11378770_SNP [dm6]	T	G	1.677e^-4	0.787	INTRON Tsp47F
2L	6932215	2L_6932215_SNP [dm3] 2L_6932215_SNP [dm6]	C	T	1.686e^-4	0.787	START_GAINED CG43232 UTR_5_PRIME CG43232 DOWNSTREAM CG18304 & 1 other
3L	12358632	3L_12358632_SNP [dm3] 3L_12365532_SNP [dm6]	C	T	1.710e^-4	0.787	INTERGENIC
2R	8182051	2R_8182051_SNP [dm3] 2R_12294546_SNP [dm6]	A	G	1.713e^-4	0.787	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11927875	3L_11927875_SNP [dm3] 3L_11934775_SNP [dm6]	A	G	1.721e^-4	0.787	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	11927980	3L_11927980_SNP [dm3] 3L_11934880_SNP [dm6]	C	A	1.721e^-4	0.787	INTRON CG44837 & 1 other
3L	11928024	3L_11928024_SNP [dm3] 3L_11934924_SNP [dm6]	A	C	1.721e^-4	0.787	INTRON CG44837 & 1 other
3L	11928552	3L_11928552_SNP [dm3] 3L_11935452_SNP [dm6]	C	T	1.721e^-4	0.787	SYNONYMOUS_CODING byn UTR_3_PRIME byn INTRON CG44837	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11929046	3L_11929046_SNP [dm3] 3L_11935946_SNP [dm6]	T	C	1.721e^-4	0.787	DOWNSTREAM byn INTRON CG44837
3L	11929411	3L_11929411_SNP [dm3] 3L_11936311_SNP [dm6]	A	T	1.721e^-4	0.787	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
3L	11929442	3L_11929442_SNP [dm3] 3L_11936342_SNP [dm6]	T	C	1.721e^-4	0.787	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
3L	11929450	3L_11929450_SNP [dm3] 3L_11936350_SNP [dm6]	A	T	1.721e^-4	0.787	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
3L	11929890	3L_11929890_SNP [dm3] 3L_11936790_SNP [dm6]	A	T	1.721e^-4	0.787	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11931492	3L_11931492_SNP [dm3] 3L_11938392_SNP [dm6]	T	G	1.721e^-4	0.787	UTR_5_PRIME CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11933584	3L_11933584_SNP [dm3] 3L_11940484_SNP [dm6]	T	G	1.721e^-4	0.787	INTERGENIC
3L	11933819	3L_11933819_SNP [dm3] 3L_11940719_SNP [dm6]	G	A	1.721e^-4	0.787	INTERGENIC
3L	11933954	3L_11933954_SNP [dm3] 3L_11940854_SNP [dm6]	A	C	1.721e^-4	0.787	INTERGENIC
3L	11934298	3L_11934298_SNP [dm3] 3L_11941198_SNP [dm6]	T	C	1.721e^-4	0.787	UPSTREAM Rpt4R INTERGENIC
3L	11934704	3L_11934704_SNP [dm3] 3L_11941604_SNP [dm6]	C	A	1.721e^-4	0.787	UPSTREAM Rpt4R INTERGENIC
3L	11934799	3L_11934799_SNP [dm3] 3L_11941699_SNP [dm6]	A	T	1.721e^-4	0.787	UPSTREAM Rpt4R INTERGENIC
3R	19206640	3R_19206640_SNP [dm3] 3R_23380918_SNP [dm6]	G	C	1.727e^-4	0.787	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
2R	10454474	2R_10454474_SNP [dm3] 2R_14566969_SNP [dm6]	A	G	1.735e^-4	0.787	INTRON ttv
3L	22840909	3L_22840909_SNP [dm3] 3L_22847809_SNP [dm6]	G	C	1.736e^-4	0.787	UPSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	22840930	3L_22840930_SNP [dm3] 3L_22847830_SNP [dm6]	G	T	1.736e^-4	0.787	UPSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	20098889	2R_20098889_SNP [dm3] 2R_24211366_SNP [dm6]	T	A	1.752e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10140104	3L_10140104_INS [dm3] 3L_10147004_INS [dm6]	C	CCC	1.755e^-4	0.787	DOWNSTREAM dpr10 INTERGENIC
3L	11931607	3L_11931607_SNP [dm3] 3L_11938507_SNP [dm6]	C	A	1.758e^-4	0.787	SPLICE_SITE_REGION CG44837 UTR_5_PRIME CG44837	TF binding site mE1_TFBS_cad
3L	9512810	3L_9512810_SNP [dm3] 3L_9519710_SNP [dm6]	T	C	1.760e^-4	0.787	INTRON CG33700
3R	16355299	3R_16355299_SNP [dm3] 3R_20529577_SNP [dm6]	A	T	1.763e^-4	0.787	INTERGENIC
3L	22539300	3L_22539300_SNP [dm3] 3L_22546200_SNP [dm6]	G	A	1.769e^-4	0.787	INTERGENIC
3L	18338163	3L_18338163_SNP [dm3] 3L_18345063_SNP [dm6]	T	C	1.775e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3R	3291316	3R_3291316_SNP [dm3] 3R_7465594_SNP [dm6]	A	G	1.779e^-4	0.787	INTERGENIC
3R	17637050	3R_17637050_SNP [dm3] 3R_21811328_SNP [dm6]	C	A	1.784e^-4	0.787	INTRON CASK
3L	11925839	3L_11925839_SNP [dm3] 3L_11932739_SNP [dm6]	A	C	1.822e^-4	0.787	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3959278	2L_3959278_SNP [dm3] 2L_3959278_SNP [dm6]	G	T	1.827e^-4	0.787	INTRON fred
3R	23182293	3R_23182293_SNP [dm3] 3R_27356571_SNP [dm6]	C	T	1.830e^-4	0.787	INTRON CG42534
X	15249142	X_15249142_SNP [dm3] X_15355109_SNP [dm6]	G	C	1.838e^-4	0.787	INTRON acj6
3R	6791097	3R_6791097_SNP [dm3] 3R_10965375_SNP [dm6]	A	G	1.863e^-4	0.787	INTERGENIC
X	20497338	X_20497338_SNP [dm3] X_20626311_SNP [dm6]	A	T	1.874e^-4	0.787	INTERGENIC
2R	8176053	2R_8176053_SNP [dm3] 2R_12288548_SNP [dm6]	G	T	1.909e^-4	0.787	INTRON CG42700
3L	18007082	3L_18007082_SNP [dm3] 3L_18013982_SNP [dm6]	T	C	1.912e^-4	0.787	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	18835836	3L_18835836_SNP [dm3] 3L_18842736_SNP [dm6]	T	C	1.921e^-4	0.787	INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da
3L	12666917	3L_12666917_SNP [dm3] 3L_12673817_SNP [dm6]	A	G	1.933e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666919	3L_12666919_SNP [dm3] 3L_12673819_SNP [dm6]	T	G	1.933e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12666920	3L_12666920_SNP [dm3] 3L_12673820_SNP [dm6]	G	A	1.933e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9888934	2R_9888934_SNP [dm3] 2R_14001429_SNP [dm6]	T	C	1.935e^-4	0.787	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12333881	3L_12333881_SNP [dm3] 3L_12340781_SNP [dm6]	G	C	1.946e^-4	0.787	INTRON CrzR
2R	14957988	2R_14957988_SNP [dm3] 2R_19070483_SNP [dm6]	C	T	1.952e^-4	0.787	INTRON 5-HT1A
3R	10172151	3R_10172151_SNP [dm3] 3R_14346429_SNP [dm6]	C	G	1.954e^-4	0.787	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11360118	3L_11360118_SNP [dm3] 3L_11367018_SNP [dm6]	C	T	1.955e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18835922	3L_18835922_SNP [dm3] 3L_18842822_SNP [dm6]	T	C	1.955e^-4	0.787	DOWNSTREAM CR32027 INTRON Indy	TF binding site BDTNP1_TFBS_da
X	3905101	X_3905101_SNP [dm3] X_4011068_SNP [dm6]	A	T	1.955e^-4	0.787	INTERGENIC
2L	4670111	2L_4670111_SNP [dm3] 2L_4670111_SNP [dm6]	T	C	1.971e^-4	0.787	INTERGENIC
2L	17925425	2L_17925425_SNP [dm3] 2L_17925425_SNP [dm6]	A	T	1.974e^-4	0.787	INTERGENIC
X	2249408	X_2249408_SNP [dm3] X_2355375_SNP [dm6]	A	G	1.978e^-4	0.787	UPSTREAM ptr INTRON ptr
3L	7282906	3L_7282906_SNP [dm3] 3L_7289806_SNP [dm6]	T	C	1.984e^-4	0.787	INTRON unc-13-4A
X	14748005	X_14748005_SNP [dm3] X_14853972_SNP [dm6]	C	T	1.984e^-4	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2R	4262469	2R_4262469_SNP [dm3] 2R_8374964_SNP [dm6]	G	A	1.988e^-4	0.787	INTRON pdm3
3L	12344432	3L_12344432_SNP [dm3] 3L_12351332_SNP [dm6]	A	G	1.988e^-4	0.787	UTR_5_PRIME CrzR
X	21901452	X_21901452_SNP [dm3] X_22499616_SNP [dm6]	G	A	2.008e^-4	0.787	DOWNSTREAM l_1_G0196 INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17395600	2L_17395600_SNP [dm3] 2L_17395600_SNP [dm6]	A	C	2.008e^-4	0.787	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
3L	12217127	3L_12217127_SNP [dm3] 3L_12224027_SNP [dm6]	T	C	2.024e^-4	0.787	INTRON app
3R	17797781	3R_17797781_SNP [dm3] 3R_21972059_SNP [dm6]	A	G	2.026e^-4	0.787	UPSTREAM Eip93F INTRON Eip93F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1617410	2L_1617410_DEL [dm3] 2L_1617410_DEL [dm6]	AA	A	2.030e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	836865	3R_836865_SNP [dm3] 3R_5011143_SNP [dm6]	G	T	2.036e^-4	0.787	UPSTREAM CG2022 INTERGENIC
3L	18024810	3L_18024810_SNP [dm3] 3L_18031710_SNP [dm6]	T	A	2.039e^-4	0.787	INTRON Eip75B
3L	18024824	3L_18024824_SNP [dm3] 3L_18031724_SNP [dm6]	G	A	2.039e^-4	0.787	INTRON Eip75B
3L	18024825	3L_18024825_SNP [dm3] 3L_18031725_SNP [dm6]	C	T	2.039e^-4	0.787	INTRON Eip75B
3L	18024849	3L_18024849_SNP [dm3] 3L_18031749_SNP [dm6]	A	G	2.039e^-4	0.787	INTRON Eip75B
3L	18024855	3L_18024855_SNP [dm3] 3L_18031755_SNP [dm6]	A	T	2.039e^-4	0.787	INTRON Eip75B
3L	18024865	3L_18024865_SNP [dm3] 3L_18031765_SNP [dm6]	T	A	2.039e^-4	0.787	INTRON Eip75B
2L	8503577	2L_8503577_SNP [dm3] 2L_8503577_SNP [dm6]	C	T	2.039e^-4	0.787	INTRON Dh31
3L	18007254	3L_18007254_SNP [dm3] 3L_18014154_SNP [dm6]	C	T	2.039e^-4	0.787	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	14748404	X_14748404_SNP [dm3] X_14854371_SNP [dm6]	G	C	2.051e^-4	0.787	UTR_3_PRIME CG9519 INTRON Flo2
X	14750719	X_14750719_SNP [dm3] X_14856686_SNP [dm6]	T	C	2.051e^-4	0.787	UPSTREAM CG9519 INTRON Flo2
X	20497405	X_20497405_DEL [dm3] X_20626378_DEL [dm6]	AATTGTTATTA...	A	2.055e^-4	0.787	INTERGENIC
2L	17902212	2L_17902212_SNP [dm3] 2L_17902212_SNP [dm6]	G	T	2.055e^-4	0.787	DOWNSTREAM CR45333 EXON CR45332
3L	11388971	3L_11388971_INS [dm3] 3L_11395871_INS [dm6]	A	AT	2.067e^-4	0.787	DOWNSTREAM CG11726 INTERGENIC
2R	6750949	2R_6750949_SNP [dm3] 2R_10863444_SNP [dm6]	C	T	2.068e^-4	0.787	INTRON CG30015
2L	685138	2L_685138_SNP [dm3] 2L_685138_SNP [dm6]	C	T	2.069e^-4	0.787	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19764948	3R_19764948_SNP [dm3] 3R_23939226_SNP [dm6]	T	C	2.070e^-4	0.787	UPSTREAM Gdh INTRON Gdh
3L	11653235	3L_11653235_SNP [dm3] 3L_11660135_SNP [dm6]	A	T	2.072e^-4	0.787	INTRON CG32085
X	2249358	X_2249358_SNP [dm3] X_2355325_SNP [dm6]	A	G	2.083e^-4	0.787	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3L	1077822	3L_1077822_SNP [dm3] 3L_1077822_SNP [dm6]	C	T	2.091e^-4	0.787	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17979647	3R_17979647_SNP [dm3] 3R_22153925_SNP [dm6]	T	C	2.093e^-4	0.787	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	2249367	X_2249367_SNP [dm3] X_2355334_SNP [dm6]	G	A	2.094e^-4	0.787	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2R	13391092	2R_13391092_SNP [dm3] 2R_17503587_SNP [dm6]	C	G	2.101e^-4	0.787	INTRON CG43164	TF binding site BDTNP1_TFBS_dl
X	10385458	X_10385458_SNP [dm3] X_10491425_SNP [dm6]	C	G	2.102e^-4	0.787	INTRON spri
2R	14957982	2R_14957982_SNP [dm3] 2R_19070477_SNP [dm6]	G	A	2.103e^-4	0.787	INTRON 5-HT1A
3L	14927136	3L_14927136_INS [dm3] 3L_14934036_INS [dm6]	A	AA	2.112e^-4	0.787	INTRON DCX-EMAP
2R	6756188	2R_6756188_SNP [dm3] 2R_10868683_SNP [dm6]	T	A	2.114e^-4	0.787	INTRON CG30015
X	3905087	X_3905087_SNP [dm3] X_4011054_SNP [dm6]	T	A	2.115e^-4	0.787	INTERGENIC
X	3905096	X_3905096_SNP [dm3] X_4011063_SNP [dm6]	T	C	2.115e^-4	0.787	INTERGENIC
X	3905107	X_3905107_SNP [dm3] X_4011074_SNP [dm6]	A	T	2.115e^-4	0.787	INTERGENIC
3R	16347770	3R_16347770_SNP [dm3] 3R_20522048_SNP [dm6]	G	A	2.126e^-4	0.787	INTERGENIC
2R	9411289	2R_9411289_SNP [dm3] 2R_13523784_SNP [dm6]	G	A	2.135e^-4	0.787	DOWNSTREAM CG13331 INTRON Vmat
3L	9805923	3L_9805923_SNP [dm3] 3L_9812823_SNP [dm6]	C	T	2.139e^-4	0.787	INTERGENIC
3L	1460659	3L_1460659_SNP [dm3] 3L_1460659_SNP [dm6]	C	A	2.150e^-4	0.787	DOWNSTREAM CR44842 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18353146	2L_18353146_SNP [dm3] 2L_18353146_SNP [dm6]	T	A	2.154e^-4	0.787	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
X	4137717	X_4137717_SNP [dm3] X_4243684_SNP [dm6]	A	C	2.166e^-4	0.787	UPSTREAM Femcoat DOWNSTREAM Muc4B INTERGENIC
3L	6390321	3L_6390321_SNP [dm3] 3L_6397221_SNP [dm6]	T	A	2.198e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14748409	X_14748409_SNP [dm3] X_14854376_SNP [dm6]	A	T	2.199e^-4	0.787	UTR_3_PRIME CG9519 INTRON Flo2
X	6889681	X_6889681_SNP [dm3] X_6995648_SNP [dm6]	C	T	2.201e^-4	0.787	DOWNSTREAM CR43837 INTRON Inx7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	13580905	2R_13580905_SNP [dm3] 2R_17693400_SNP [dm6]	A	T	2.213e^-4	0.787	INTRON swi2
3L	12666984	3L_12666984_SNP [dm3] 3L_12673884_SNP [dm6]	G	T	2.213e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12667016	3L_12667016_SNP [dm3] 3L_12673916_SNP [dm6]	T	C	2.213e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	15678604	3L_15678604_SNP [dm3] 3L_15685504_SNP [dm6]	A	G	2.213e^-4	0.787	NON_SYNONYMOUS_CODING pgant8 DOWNSTREAM CG34452	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15679158	3L_15679158_SNP [dm3] 3L_15686058_SNP [dm6]	G	T	2.213e^-4	0.787	NON_SYNONYMOUS_CODING pgant8 DOWNSTREAM CG34452
3L	18256615	3L_18256615_SNP [dm3] 3L_18263515_SNP [dm6]	A	G	2.213e^-4	0.787	INTERGENIC
X	4562500	X_4562500_SNP [dm3] X_4668467_SNP [dm6]	C	T	2.213e^-4	0.787	SYNONYMOUS_CODING rap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11917086	X_11917086_SNP [dm3] X_12023053_SNP [dm6]	A	T	2.214e^-4	0.787	UTR_3_PRIME Usp7 DOWNSTREAM Usp7 & 1 other
3L	11123871	3L_11123871_SNP [dm3] 3L_11130771_SNP [dm6]	C	A	2.243e^-4	0.787	UPSTREAM nol INTRON CG42575
3L	18007334	3L_18007334_SNP [dm3] 3L_18014234_SNP [dm6]	A	G	2.249e^-4	0.787	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	13964564	X_13964564_SNP [dm3] X_14070531_SNP [dm6]	A	G	2.252e^-4	0.787	UPSTREAM tRNA:S474:12Eh INTERGENIC
2L	17925407	2L_17925407_SNP [dm3] 2L_17925407_SNP [dm6]	T	G	2.254e^-4	0.787	INTERGENIC
3R	10595780	3R_10595780_SNP [dm3] 3R_14770058_SNP [dm6]	T	G	2.261e^-4	0.787	INTRON jvl
2L	11685882	2L_11685882_SNP [dm3] 2L_11685882_SNP [dm6]	A	C	2.272e^-4	0.787	INTERGENIC
3R	25463402	3R_25463402_INS [dm3] 3R_29637680_INS [dm6]	G	GTACTT	2.276e^-4	0.787	INTRON Dop1R2
3R	25463407	3R_25463407_SNP [dm3] 3R_29637685_SNP [dm6]	G	A	2.276e^-4	0.787	INTRON Dop1R2
X	14966995	X_14966995_SNP [dm3] X_15072962_SNP [dm6]	T	C	2.287e^-4	0.787	NON_SYNONYMOUS_CODING Lsd-2 INTRON Lsd-2
2R	8977418	2R_8977418_SNP [dm3] 2R_13089913_SNP [dm6]	T	C	2.302e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2024450	2R_2024450_SNP [dm3] 2R_6136945_SNP [dm6]	A	T	2.326e^-4	0.787	UPSTREAM CG14589 INTRON EcR
2L	4472297	2L_4472297_SNP [dm3] 2L_4472297_SNP [dm6]	G	A	2.329e^-4	0.787	INTRON ine
2L	8084986	2L_8084986_SNP [dm3] 2L_8084986_SNP [dm6]	T	C	2.340e^-4	0.787	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2R	8189781	2R_8189781_DEL [dm3] 2R_12302276_DEL [dm6]	GAATCCACGCAGCGG...	G	2.349e^-4	0.787	UPSTREAM CG8850 DOWNSTREAM SIP2 INTERGENIC
3L	13517073	3L_13517073_SNP [dm3] 3L_13523973_SNP [dm6]	G	T	2.356e^-4	0.787	UTR_3_PRIME bru-3
2L	17395651	2L_17395651_SNP [dm3] 2L_17395651_SNP [dm6]	G	A	2.372e^-4	0.787	INTRON CLIP-190	TF binding site mE1_TFBS_zfh1
2L	20246038	2L_20246038_INS [dm3] 2L_20246038_INS [dm6]	A	TTATAAACTTATT...	2.375e^-4	0.787	INTERGENIC
2L	20246098	2L_20246098_SNP [dm3] 2L_20246098_SNP [dm6]	A	T	2.375e^-4	0.787	INTERGENIC
2R	8782364	2R_8782364_SNP [dm3] 2R_12894859_SNP [dm6]	C	A	2.375e^-4	0.787	INTRON vg	TF binding site BDTNP1_TFBS_dl
3L	11092534	3L_11092534_SNP [dm3] 3L_11099434_SNP [dm6]	T	C	2.375e^-4	0.787	SYNONYMOUS_CODING APP-BP1 DOWNSTREAM pncr011:3L
3L	11092542	3L_11092542_SNP [dm3] 3L_11099442_SNP [dm6]	T	G	2.375e^-4	0.787	SYNONYMOUS_CODING APP-BP1 DOWNSTREAM pncr011:3L
3L	11092554	3L_11092554_SNP [dm3] 3L_11099454_SNP [dm6]	C	T	2.375e^-4	0.787	SYNONYMOUS_CODING APP-BP1 DOWNSTREAM pncr011:3L
3L	15676195	3L_15676195_SNP [dm3] 3L_15683095_SNP [dm6]	G	C	2.375e^-4	0.787	NON_SYNONYMOUS_CODING CG7579 UPSTREAM pgant8	TF binding site mE1_TFBS_sens
3L	15679513	3L_15679513_SNP [dm3] 3L_15686413_SNP [dm6]	A	T	2.375e^-4	0.787	UTR_3_PRIME pgant8 & 1 other
3R	16467032	3R_16467032_SNP [dm3] 3R_20641310_SNP [dm6]	G	A	2.375e^-4	0.787	SYNONYMOUS_CODING Lrrk
X	5327621	X_5327621_SNP [dm3] X_5433588_SNP [dm6]	G	A	2.375e^-4	0.787	EXON CR44471	TF binding site mE1_TFBS_Trl
X	5327710	X_5327710_SNP [dm3] X_5433677_SNP [dm6]	A	C	2.375e^-4	0.787	INTRON CR44471	TF binding site mE1_TFBS_Trl
X	5327714	X_5327714_SNP [dm3] X_5433681_SNP [dm6]	G	A	2.375e^-4	0.787	INTRON CR44471	TF binding site mE1_TFBS_Trl
2L	18027540	2L_18027540_SNP [dm3] 2L_18027540_SNP [dm6]	G	A	2.379e^-4	0.787	INTRON rdo
3R	24688643	3R_24688643_SNP [dm3] 3R_28862921_SNP [dm6]	A	T	2.384e^-4	0.787	INTRON spg
3L	9540447	3L_9540447_INS [dm3] 3L_9547347_INS [dm6]	T	TCG	2.388e^-4	0.787	UTR_5_PRIME CG42673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5722756	2L_5722756_SNP [dm3] 2L_5722756_SNP [dm6]	T	G	2.398e^-4	0.787	NON_SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4064242	3L_4064242_SNP [dm3] 3L_4064242_SNP [dm6]	T	A	2.405e^-4	0.787	UTR_3_PRIME dib & 1 other	TF binding site mE1_TFBS_cad
3L	3955833	3L_3955833_SNP [dm3] 3L_3955833_SNP [dm6]	T	C	2.416e^-4	0.787	UTR_3_PRIME CG12605
X	4765196	X_4765196_DEL [dm3] X_4871163_DEL [dm6]	GCCATGG	G	2.418e^-4	0.787	INTRON CG42594
3R	16256085	3R_16256085_SNP [dm3] 3R_20430363_SNP [dm6]	T	G	2.420e^-4	0.787	INTRON Gfrl
3L	6934637	3L_6934637_SNP [dm3] 3L_6941537_SNP [dm6]	T	C	2.422e^-4	0.787	INTERGENIC
3L	9512298	3L_9512298_SNP [dm3] 3L_9519198_SNP [dm6]	G	C	2.434e^-4	0.787	INTRON CG33700
2L	1991200	2L_1991200_SNP [dm3] 2L_1991200_SNP [dm6]	C	T	2.441e^-4	0.787	DOWNSTREAM Obp22a & 1 other INTERGENIC
2L	4165743	2L_4165743_SNP [dm3] 2L_4165743_SNP [dm6]	T	C	2.447e^-4	0.787	NON_SYNONYMOUS_CODING Or24a
2R	9963808	2R_9963808_DEL [dm3] 2R_14076303_DEL [dm6]	ATAAATA	A	2.450e^-4	0.787	INTRON Prosap
2L	8961673	2L_8961673_SNP [dm3] 2L_8961673_SNP [dm6]	C	T	2.479e^-4	0.787	NON_SYNONYMOUS_CODING CG9525 UPSTREAM CG32985
2R	9778191	2R_9778191_SNP [dm3] 2R_13890686_SNP [dm6]	T	G	2.482e^-4	0.787	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_sens
3R	8176776	3R_8176776_SNP [dm3] 3R_12351054_SNP [dm6]	G	A	2.486e^-4	0.787	SYNONYMOUS_CODING CG10041 UPSTREAM CG10038	TF binding site BDTNP1_TFBS_dl
X	3905103	X_3905103_SNP [dm3] X_4011070_SNP [dm6]	C	T	2.486e^-4	0.787	INTERGENIC
X	3905104	X_3905104_SNP [dm3] X_4011071_SNP [dm6]	A	T	2.486e^-4	0.787	INTERGENIC
3R	25021199	3R_25021199_SNP [dm3] 3R_29195477_SNP [dm6]	T	C	2.486e^-4	0.787	UPSTREAM CG14509 INTERGENIC
3R	16255933	3R_16255933_SNP [dm3] 3R_20430211_SNP [dm6]	T	G	2.501e^-4	0.787	INTRON Gfrl
2L	16990629	2L_16990629_SNP [dm3] 2L_16990629_SNP [dm6]	A	G	2.509e^-4	0.787	INTRON beat-IIIb
2L	16990636	2L_16990636_SNP [dm3] 2L_16990636_SNP [dm6]	T	A	2.509e^-4	0.787	INTRON beat-IIIb
3L	5910770	3L_5910770_SNP [dm3] 3L_5917670_SNP [dm6]	C	A	2.512e^-4	0.787	UPSTREAM CR45167 DOWNSTREAM CG10483 & 1 other INTERGENIC
3R	25463427	3R_25463427_SNP [dm3] 3R_29637705_SNP [dm6]	G	A	2.517e^-4	0.787	INTRON Dop1R2
X	3905079	X_3905079_SNP [dm3] X_4011046_SNP [dm6]	A	C	2.517e^-4	0.787	INTERGENIC
3L	18024845	3L_18024845_SNP [dm3] 3L_18031745_SNP [dm6]	G	C	2.518e^-4	0.787	INTRON Eip75B
3L	18024846	3L_18024846_SNP [dm3] 3L_18031746_SNP [dm6]	G	C	2.518e^-4	0.787	INTRON Eip75B
3L	10976613	3L_10976613_SNP [dm3] 3L_10983513_SNP [dm6]	C	A	2.519e^-4	0.787	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5302848	X_5302848_SNP [dm3] X_5408815_SNP [dm6]	G	C	2.531e^-4	0.787	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
3L	11244085	3L_11244085_SNP [dm3] 3L_11250985_SNP [dm6]	A	G	2.542e^-4	0.787	UPSTREAM CR44716 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	11929576	3L_11929576_SNP [dm3] 3L_11936476_SNP [dm6]	G	T	2.552e^-4	0.787	DOWNSTREAM byn INTRON CG44837	TF binding site mE1_TFBS_cad
2R	8185317	2R_8185317_SNP [dm3] 2R_12297812_SNP [dm6]	A	G	2.564e^-4	0.787	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
3R	6019445	3R_6019445_DEL [dm3] 3R_10193723_DEL [dm6]	TTTGTTGG	T	2.574e^-4	0.787	INTRON Syn
3L	18338100	3L_18338100_SNP [dm3] 3L_18345000_SNP [dm6]	A	C	2.586e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3L	18338113	3L_18338113_DEL [dm3] 3L_18345013_DEL [dm6]	AGCATTATATTTTAAAAAA...	A	2.586e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3L	18338193	3L_18338193_SNP [dm3] 3L_18345093_SNP [dm6]	C	G	2.586e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	18338199	3L_18338199_SNP [dm3] 3L_18345099_SNP [dm6]	C	A	2.586e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	12335963	3L_12335963_SNP [dm3] 3L_12342863_SNP [dm6]	A	T	2.591e^-4	0.787	INTRON CrzR
X	12769179	X_12769179_SNP [dm3] X_12875146_SNP [dm6]	G	A	2.592e^-4	0.787	INTRON Pde9
X	16904032	X_16904032_SNP [dm3] X_17009999_SNP [dm6]	C	T	2.593e^-4	0.787	INTRON CG45002
3L	10194155	3L_10194155_SNP [dm3] 3L_10201055_SNP [dm6]	G	C	2.594e^-4	0.787	INTRON ect
3L	1094154	3L_1094154_SNP [dm3] 3L_1094154_SNP [dm6]	T	C	2.606e^-4	0.787	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8367956	2R_8367956_SNP [dm3] 2R_12480451_SNP [dm6]	G	A	2.609e^-4	0.787	INTRON Dh44-R2
2R	9662489	2R_9662489_SNP [dm3] 2R_13774984_SNP [dm6]	G	A	2.617e^-4	0.787	SYNONYMOUS_CODING Cpr50Ca
X	13840408	X_13840408_INS [dm3] X_13946375_INS [dm6]	A	AGAAA	2.620e^-4	0.787	INTRON mamo
2L	8977461	2L_8977461_SNP [dm3] 2L_8977461_SNP [dm6]	C	T	2.621e^-4	0.787	DOWNSTREAM CG13101 INTERGENIC
3L	18603355	3L_18603355_SNP [dm3] 3L_18610255_SNP [dm6]	T	A	2.631e^-4	0.787	NON_SYNONYMOUS_CODING CG32201 DOWNSTREAM CG18231 INTRON CG4174 & 1 other
3L	8816309	3L_8816309_SNP [dm3] 3L_8823209_SNP [dm6]	C	T	2.633e^-4	0.787	INTERGENIC
2L	17529309	2L_17529309_SNP [dm3] 2L_17529309_SNP [dm6]	G	A	2.633e^-4	0.787	UPSTREAM CG15144 DOWNSTREAM CG15145 INTERGENIC
3L	11115991	3L_11115991_SNP [dm3] 3L_11122891_SNP [dm6]	A	G	2.639e^-4	0.787	UPSTREAM CG42575 DOWNSTREAM mRpL2 INTRON Ufd1-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	11115997	3L_11115997_SNP [dm3] 3L_11122897_SNP [dm6]	T	A	2.639e^-4	0.787	UPSTREAM CG42575 DOWNSTREAM mRpL2 INTRON Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	11115999	3L_11115999_SNP [dm3] 3L_11122899_SNP [dm6]	T	G	2.639e^-4	0.787	UPSTREAM CG42575 DOWNSTREAM mRpL2 INTRON Ufd1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	11385982	3L_11385982_SNP [dm3] 3L_11392882_SNP [dm6]	A	C	2.641e^-4	0.787	INTERGENIC
2L	18352830	2L_18352830_DEL [dm3] 2L_18352830_DEL [dm6]	ACGCC	TT	2.648e^-4	0.787	INTRON Fas3
3R	6735381	3R_6735381_SNP [dm3] 3R_10909659_SNP [dm6]	T	C	2.654e^-4	0.787	INTERGENIC
3L	12358643	3L_12358643_SNP [dm3] 3L_12365543_SNP [dm6]	A	T	2.657e^-4	0.787	INTERGENIC
2R	9824417	2R_9824417_SNP [dm3] 2R_13936912_SNP [dm6]	A	C	2.666e^-4	0.787	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24611293	3R_24611293_SNP [dm3] 3R_28785571_SNP [dm6]	G	T	2.673e^-4	0.787	INTERGENIC
2L	14010952	2L_14010952_SNP [dm3] 2L_14010952_SNP [dm6]	T	C	2.676e^-4	0.787	UPSTREAM tRNA:Q:34E INTERGENIC
2R	9888819	2R_9888819_SNP [dm3] 2R_14001314_SNP [dm6]	C	T	2.680e^-4	0.787	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4767526	2L_4767526_SNP [dm3] 2L_4767526_SNP [dm6]	T	C	2.686e^-4	0.787	INTRON CG15630
X	12769235	X_12769235_SNP [dm3] X_12875202_SNP [dm6]	G	A	2.705e^-4	0.787	INTRON Pde9
2L	16364249	2L_16364249_SNP [dm3] 2L_16364249_SNP [dm6]	T	C	2.709e^-4	0.787	INTERGENIC	regulatory region REDfly_CRMs
2L	16364257	2L_16364257_SNP [dm3] 2L_16364257_SNP [dm6]	G	C	2.709e^-4	0.787	INTERGENIC	regulatory region REDfly_CRMs
3R	24853713	3R_24853713_SNP [dm3] 3R_29027991_SNP [dm6]	A	G	2.716e^-4	0.787	SYNONYMOUS_CODING CG1951 UPSTREAM eIF4E-6	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
3R	25021230	3R_25021230_SNP [dm3] 3R_29195508_SNP [dm6]	A	C	2.738e^-4	0.787	UPSTREAM CG14509 INTERGENIC
2R	18362465	2R_18362465_SNP [dm3] 2R_22474960_SNP [dm6]	A	G	2.745e^-4	0.787	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18345630	2L_18345630_SNP [dm3] 2L_18345630_SNP [dm6]	A	G	2.749e^-4	0.787	INTRON Fas3	TF binding site mE1_TFBS_inv
2L	18345905	2L_18345905_SNP [dm3] 2L_18345905_SNP [dm6]	G	A	2.749e^-4	0.787	INTRON Fas3
2L	18346268	2L_18346268_SNP [dm3] 2L_18346268_SNP [dm6]	G	A	2.749e^-4	0.787	INTRON Fas3
2L	11466856	2L_11466856_SNP [dm3] 2L_11466856_SNP [dm6]	T	G	2.752e^-4	0.787	INTERGENIC
3R	559101	3R_559101_SNP [dm3] 3R_4733379_SNP [dm6]	A	C	2.777e^-4	0.787	DOWNSTREAM tacc INTERGENIC
3R	19571072	3R_19571072_SNP [dm3] 3R_23745350_SNP [dm6]	A	C	2.778e^-4	0.787	INTRON Hmgcr
3R	19571073	3R_19571073_SNP [dm3] 3R_23745351_SNP [dm6]	A	C	2.778e^-4	0.787	INTRON Hmgcr
3R	19571075	3R_19571075_DEL [dm3] 3R_23745353_DEL [dm6]	CTA	C	2.778e^-4	0.787	INTRON Hmgcr
3L	9983230	3L_9983230_SNP [dm3] 3L_9990130_SNP [dm6]	C	T	2.796e^-4	0.787	INTRON dpr6
X	3905119	X_3905119_SNP [dm3] X_4011086_SNP [dm6]	G	A	2.800e^-4	0.787	INTERGENIC
X	3905123	X_3905123_SNP [dm3] X_4011090_SNP [dm6]	G	A	2.800e^-4	0.787	INTERGENIC
3R	24200726	3R_24200726_SNP [dm3] 3R_28375004_SNP [dm6]	G	A	2.800e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26804827	3R_26804827_SNP [dm3] 3R_30979105_SNP [dm6]	G	A	2.809e^-4	0.787	INTRON 5-HT7
3R	26804828	3R_26804828_DEL [dm3] 3R_30979106_DEL [dm6]	CA	C	2.809e^-4	0.787	INTRON 5-HT7
X	14537149	X_14537149_SNP [dm3] X_14643116_SNP [dm6]	A	T	2.823e^-4	0.787	INTRON NetA
3R	10915855	3R_10915855_SNP [dm3] 3R_15090133_SNP [dm6]	G	C	2.823e^-4	0.787	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	17311459	2R_17311459_SNP [dm3] 2R_21423954_SNP [dm6]	G	C	2.837e^-4	0.787	INTRON Sdc
3R	10749054	3R_10749054_SNP [dm3] 3R_14923332_SNP [dm6]	T	C	2.843e^-4	0.787	DOWNSTREAM Sdr EXON CR45598
3L	9872578	3L_9872578_SNP [dm3] 3L_9879478_SNP [dm6]	G	T	2.843e^-4	0.787	UTR_5_PRIME CG34382
2L	11601064	2L_11601064_SNP [dm3] 2L_11601064_SNP [dm6]	C	A	2.850e^-4	0.787	INTRON kek2
3R	19543391	3R_19543391_SNP [dm3] 3R_23717669_SNP [dm6]	C	G	2.873e^-4	0.787	SYNONYMOUS_CODING nau	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2249366	X_2249366_SNP [dm3] X_2355333_SNP [dm6]	T	A	2.883e^-4	0.787	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2L	14050752	2L_14050752_SNP [dm3] 2L_14050752_SNP [dm6]	T	G	2.892e^-4	0.787	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
3L	8805201	3L_8805201_SNP [dm3] 3L_8812101_SNP [dm6]	G	A	2.907e^-4	0.787	DOWNSTREAM CG13309 INTERGENIC
3R	19526475	3R_19526475_SNP [dm3] 3R_23700753_SNP [dm6]	C	T	2.913e^-4	0.787	UPSTREAM CG31468 INTRON CG31148
3L	9282082	3L_9282082_SNP [dm3] 3L_9288982_SNP [dm6]	G	A	2.917e^-4	0.787	DOWNSTREAM GluRIB INTERGENIC
3L	9282086	3L_9282086_SNP [dm3] 3L_9288986_SNP [dm6]	G	A	2.917e^-4	0.787	DOWNSTREAM GluRIB INTERGENIC
3L	700265	3L_700265_SNP [dm3] 3L_700265_SNP [dm6]	T	A	2.951e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	14752159	X_14752159_SNP [dm3] X_14858126_SNP [dm6]	G	T	2.956e^-4	0.787	INTRON Flo2
3R	6722197	3R_6722197_INS [dm3] 3R_10896475_INS [dm6]	G	GG	2.965e^-4	0.787	DOWNSTREAM CR45577 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
3L	11552149	3L_11552149_SNP [dm3] 3L_11559049_SNP [dm6]	T	C	2.974e^-4	0.787	UPSTREAM Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
2R	8183657	2R_8183657_SNP [dm3] 2R_12296152_SNP [dm6]	C	A	2.990e^-4	0.787	DOWNSTREAM CR45271 INTRON CG42700
X	9929877	X_9929877_SNP [dm3] X_10035844_SNP [dm6]	A	G	2.992e^-4	0.787	SYNONYMOUS_CODING Cht6 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7301051	2L_7301051_SNP [dm3] 2L_7301051_SNP [dm6]	T	C	2.998e^-4	0.787	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6723171	3R_6723171_SNP [dm3] 3R_10897449_SNP [dm6]	A	G	3.003e^-4	0.787	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3L	5398609	3L_5398609_SNP [dm3] 3L_5405509_SNP [dm6]	T	C	3.004e^-4	0.787	INTERGENIC
3L	18338173	3L_18338173_SNP [dm3] 3L_18345073_SNP [dm6]	C	G	3.028e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3L	11653238	3L_11653238_SNP [dm3] 3L_11660138_SNP [dm6]	T	G	3.041e^-4	0.787	INTRON CG32085
3R	816457	3R_816457_SNP [dm3] 3R_4990735_SNP [dm6]	A	T	3.047e^-4	0.787	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
X	20621043	X_20621043_SNP [dm3] X_20750016_SNP [dm6]	T	C	3.051e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	8514043	3L_8514043_SNP [dm3] 3L_8520943_SNP [dm6]	T	C	3.059e^-4	0.787	SYNONYMOUS_CODING se DOWNSTREAM GstO3 & 1 other
X	14752387	X_14752387_INS [dm3] X_14858354_INS [dm6]	T	TA	3.068e^-4	0.787	INTRON Flo2
3L	11441234	3L_11441234_SNP [dm3] 3L_11448134_SNP [dm6]	T	C	3.087e^-4	0.787	INTERGENIC
3R	6028732	3R_6028732_INS [dm3] 3R_10203010_INS [dm6]	A	ATCA	3.102e^-4	0.787	DOWNSTREAM Timp INTRON Syn	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	6028749	3R_6028749_SNP [dm3] 3R_10203027_SNP [dm6]	G	C	3.102e^-4	0.787	DOWNSTREAM Timp INTRON Syn	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7356107	3L_7356107_SNP [dm3] 3L_7363007_SNP [dm6]	G	A	3.105e^-4	0.787	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14745265	X_14745265_SNP [dm3] X_14851232_SNP [dm6]	T	G	3.106e^-4	0.787	UTR_3_PRIME CG9521 INTRON Flo2
X	14745317	X_14745317_SNP [dm3] X_14851284_SNP [dm6]	A	G	3.106e^-4	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2
X	14745769	X_14745769_SNP [dm3] X_14851736_SNP [dm6]	A	G	3.106e^-4	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_sens
2R	8183545	2R_8183545_SNP [dm3] 2R_12296040_SNP [dm6]	T	A	3.108e^-4	0.787	DOWNSTREAM CR45271 INTRON CG42700
X	12328784	X_12328784_SNP [dm3] X_12434751_SNP [dm6]	C	A	3.108e^-4	0.787	INTRON Pkcdelta
3L	8819873	3L_8819873_SNP [dm3] 3L_8826773_SNP [dm6]	A	T	3.109e^-4	0.787	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	11899164	X_11899164_DEL [dm3] X_12005131_DEL [dm6]	TT	T	3.110e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_HSA
X	11899425	X_11899425_SNP [dm3] X_12005392_SNP [dm6]	T	A	3.110e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_HSA
X	11899465	X_11899465_SNP [dm3] X_12005432_SNP [dm6]	A	T	3.110e^-4	0.787	INTERGENIC
3R	18564409	3R_18564409_SNP [dm3] 3R_22738687_SNP [dm6]	G	A	3.110e^-4	0.787	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12074623	2L_12074623_SNP [dm3] 2L_12074623_SNP [dm6]	C	G	3.115e^-4	0.787	INTERGENIC
X	19574514	X_19574514_SNP [dm3] X_19680481_SNP [dm6]	T	A	3.120e^-4	0.787	INTRON dome	regulatory region REDfly_CRMs
2R	8181198	2R_8181198_SNP [dm3] 2R_12293693_SNP [dm6]	C	T	3.124e^-4	0.787	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8181355	2R_8181355_DEL [dm3] 2R_12293850_DEL [dm6]	AG	A	3.124e^-4	0.787	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16570915	X_16570915_SNP [dm3] X_16676882_SNP [dm6]	T	G	3.148e^-4	0.787	UPSTREAM CG13012 INTERGENIC
X	14746100	X_14746100_SNP [dm3] X_14852067_SNP [dm6]	C	T	3.156e^-4	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14746316	X_14746316_SNP [dm3] X_14852283_SNP [dm6]	C	T	3.156e^-4	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14747520	X_14747520_SNP [dm3] X_14853487_SNP [dm6]	C	T	3.156e^-4	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
X	14748473	X_14748473_SNP [dm3] X_14854440_SNP [dm6]	C	T	3.156e^-4	0.787	NON_SYNONYMOUS_CODING CG9519 INTRON Flo2
X	14748747	X_14748747_SNP [dm3] X_14854714_SNP [dm6]	A	G	3.156e^-4	0.787	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad
3R	3291560	3R_3291560_SNP [dm3] 3R_7465838_SNP [dm6]	T	A	3.159e^-4	0.787	INTERGENIC
3L	7356071	3L_7356071_SNP [dm3] 3L_7362971_SNP [dm6]	C	T	3.163e^-4	0.787	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7356134	3L_7356134_SNP [dm3] 3L_7363034_SNP [dm6]	C	T	3.163e^-4	0.787	SYNONYMOUS_CODING Sec63	TF binding site mE1_TFBS_chinmo
3L	9497822	3L_9497822_SNP [dm3] 3L_9504722_SNP [dm6]	G	A	3.177e^-4	0.787	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9540446	3L_9540446_SNP [dm3] 3L_9547346_SNP [dm6]	C	T	3.182e^-4	0.787	UTR_5_PRIME CG42673	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3289014	3R_3289014_SNP [dm3] 3R_7463292_SNP [dm6]	G	A	3.182e^-4	0.787	INTERGENIC
3L	15677588	3L_15677588_SNP [dm3] 3L_15684488_SNP [dm6]	T	C	3.182e^-4	0.787	INTRON pgant8
3L	15677591	3L_15677591_SNP [dm3] 3L_15684491_SNP [dm6]	T	C	3.182e^-4	0.787	INTRON pgant8
3L	15677592	3L_15677592_SNP [dm3] 3L_15684492_SNP [dm6]	A	T	3.182e^-4	0.787	INTRON pgant8
3L	12514085	3L_12514085_INS [dm3] 3L_12520985_INS [dm6]	C	CCTC	3.182e^-4	0.787	DOWNSTREAM Gcn5 & 1 other INTERGENIC
3R	8176753	3R_8176753_SNP [dm3] 3R_12351031_SNP [dm6]	A	G	3.192e^-4	0.787	SYNONYMOUS_CODING CG10041 UPSTREAM CG10038	TF binding site BDTNP1_TFBS_dl
2L	11722222	2L_11722222_SNP [dm3] 2L_11722222_SNP [dm6]	A	T	3.209e^-4	0.787	DOWNSTREAM CR44143 INTERGENIC	TF binding site mE1_TFBS_cad
3R	18555623	3R_18555623_SNP [dm3] 3R_22729901_SNP [dm6]	A	C	3.212e^-4	0.787	INTRON CG45049
2L	2854889	2L_2854889_SNP [dm3] 2L_2854889_SNP [dm6]	G	T	3.215e^-4	0.787	UTR_5_PRIME CG3104 INTRON CG3104
3L	12493776	3L_12493776_SNP [dm3] 3L_12500676_SNP [dm6]	G	C	3.215e^-4	0.787	NON_SYNONYMOUS_CODING CG10638 UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15543773	X_15543773_SNP [dm3] X_15649740_SNP [dm6]	T	C	3.215e^-4	0.787	INTERGENIC
3L	18102801	3L_18102801_SNP [dm3] 3L_18109701_SNP [dm6]	T	C	3.232e^-4	0.787	UPSTREAM mus304 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	8910883	2L_8910883_SNP [dm3] 2L_8910883_SNP [dm6]	A	T	3.263e^-4	0.787	INTRON CG34398
2R	18362872	2R_18362872_SNP [dm3] 2R_22475367_SNP [dm6]	C	T	3.269e^-4	0.787	NON_SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
2R	18362879	2R_18362879_SNP [dm3] 2R_22475374_SNP [dm6]	T	C	3.269e^-4	0.787	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
3R	6309634	3R_6309634_SNP [dm3] 3R_10483912_SNP [dm6]	T	G	3.269e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6309671	3R_6309671_SNP [dm3] 3R_10483949_SNP [dm6]	A	T	3.269e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6309672	3R_6309672_SNP [dm3] 3R_10483950_SNP [dm6]	A	T	3.269e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18346246	2L_18346246_SNP [dm3] 2L_18346246_SNP [dm6]	G	T	3.275e^-4	0.787	INTRON Fas3
X	2249279	X_2249279_SNP [dm3] X_2355246_SNP [dm6]	G	T	3.276e^-4	0.787	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3L	778044	3L_778044_SNP [dm3] 3L_778044_SNP [dm6]	C	T	3.277e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15019414	2L_15019414_DEL [dm3] 2L_15019414_DEL [dm6]	TCCAT	T	3.295e^-4	0.787	INTRON GABA-B-R1
2R	9778074	2R_9778074_SNP [dm3] 2R_13890569_SNP [dm6]	A	C	3.322e^-4	0.787	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_sens
2R	12111756	2R_12111756_SNP [dm3] 2R_16224251_SNP [dm6]	T	C	3.334e^-4	0.787	SYNONYMOUS_CODING CG15706	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9824227	2R_9824227_SNP [dm3] 2R_13936722_SNP [dm6]	G	A	3.341e^-4	0.787	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9824251	2R_9824251_SNP [dm3] 2R_13936746_SNP [dm6]	T	A	3.341e^-4	0.787	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8839017	2R_8839017_SNP [dm3] 2R_12951512_SNP [dm6]	C	T	3.345e^-4	0.787	INTRON CG44251 & 1 other	TF binding site mE1_TFBS_cad
X	2565616	X_2565616_SNP [dm3] X_2671583_SNP [dm6]	A	C	3.349e^-4	0.787	INTRON sgg
3R	19707342	3R_19707342_SNP [dm3] 3R_23881620_SNP [dm6]	A	T	3.350e^-4	0.787	INTRON Pli
3R	20415354	3R_20415354_SNP [dm3] 3R_24589632_SNP [dm6]	C	T	3.350e^-4	0.787	INTRON mld	TF binding site mE1_TFBS_HSA
3R	25131909	3R_25131909_SNP [dm3] 3R_29306187_SNP [dm6]	T	A	3.350e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3831138	2L_3831138_SNP [dm3] 2L_3831138_SNP [dm6]	T	A	3.351e^-4	0.787	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11185661	2L_11185661_SNP [dm3] 2L_11185661_SNP [dm6]	G	A	3.355e^-4	0.787	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15116874	3R_15116874_SNP [dm3] 3R_19291152_SNP [dm6]	C	G	3.356e^-4	0.787	INTERGENIC
2R	8190215	2R_8190215_DEL [dm3] 2R_12302710_DEL [dm6]	GATGTTTAACGCTGGTCTTG...	G	3.362e^-4	0.787	UTR_3_PRIME SIP2 UPSTREAM CG8850
2L	18066714	2L_18066714_SNP [dm3] 2L_18066714_SNP [dm6]	C	T	3.370e^-4	0.787	INTRON rdo
2R	8178793	2R_8178793_SNP [dm3] 2R_12291288_SNP [dm6]	G	T	3.378e^-4	0.787	INTRON CG42700
2L	18343716	2L_18343716_SNP [dm3] 2L_18343716_SNP [dm6]	G	T	3.379e^-4	0.787	INTRON Fas3
2L	18343901	2L_18343901_SNP [dm3] 2L_18343901_SNP [dm6]	T	C	3.379e^-4	0.787	INTRON Fas3
2L	18348622	2L_18348622_SNP [dm3] 2L_18348622_SNP [dm6]	C	G	3.379e^-4	0.787	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18352037	2L_18352037_SNP [dm3] 2L_18352037_SNP [dm6]	A	T	3.379e^-4	0.787	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18353156	2L_18353156_DEL [dm3] 2L_18353156_DEL [dm6]	TATGGTAGT	T	3.379e^-4	0.787	INTRON Fas3	TF binding site BDTNP1_TFBS_twi
2R	14179180	2R_14179180_INS [dm3] 2R_18291675_INS [dm6]	T	TCT	3.381e^-4	0.787	UPSTREAM CG14502 INTRON CG14502 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	3904882	X_3904882_SNP [dm3] X_4010849_SNP [dm6]	C	T	3.392e^-4	0.787	INTERGENIC
3L	11758547	3L_11758547_SNP [dm3] 3L_11765447_SNP [dm6]	C	A	3.407e^-4	0.787	INTRON CG6024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	15333470	3R_15333470_SNP [dm3] 3R_19507748_SNP [dm6]	C	G	3.407e^-4	0.787	INTRON Dys
3R	6723169	3R_6723169_SNP [dm3] 3R_10897447_SNP [dm6]	T	A	3.407e^-4	0.787	UPSTREAM CR45577 DOWNSTREAM CR45578 INTERGENIC
3R	19764943	3R_19764943_SNP [dm3] 3R_23939221_SNP [dm6]	G	A	3.408e^-4	0.787	UPSTREAM Gdh INTRON Gdh
3L	17951754	3L_17951754_SNP [dm3] 3L_17958654_SNP [dm6]	A	G	3.410e^-4	0.787	INTRON Eip75B
3R	3447033	3R_3447033_DEL [dm3] 3R_7621311_DEL [dm6]	CC	C	3.415e^-4	0.787	INTRON CG34127
2L	18065420	2L_18065420_SNP [dm3] 2L_18065420_SNP [dm6]	A	G	3.432e^-4	0.787	SYNONYMOUS_CODING rdo
X	14291725	X_14291725_SNP [dm3] X_14397692_SNP [dm6]	A	G	3.434e^-4	0.787	INTRON dpr8
3L	7838097	3L_7838097_SNP [dm3] 3L_7844997_SNP [dm6]	C	T	3.436e^-4	0.787	INTRON Pdp1	regulatory region REDfly_CRMs
3L	7838102	3L_7838102_SNP [dm3] 3L_7845002_SNP [dm6]	C	T	3.436e^-4	0.787	INTRON Pdp1	regulatory region REDfly_CRMs
2R	16168200	2R_16168200_SNP [dm3] 2R_20280695_SNP [dm6]	A	T	3.441e^-4	0.787	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3L	11463339	3L_11463339_SNP [dm3] 3L_11470239_SNP [dm6]	A	G	3.453e^-4	0.787	INTERGENIC
3R	6309513	3R_6309513_SNP [dm3] 3R_10483791_SNP [dm6]	G	A	3.461e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17558438	3R_17558438_SNP [dm3] 3R_21732716_SNP [dm6]	C	T	3.466e^-4	0.787	INTERGENIC
3R	3447595	3R_3447595_SNP [dm3] 3R_7621873_SNP [dm6]	G	T	3.472e^-4	0.787	INTRON CG34127
3R	3464665	3R_3464665_SNP [dm3] 3R_7638943_SNP [dm6]	G	T	3.472e^-4	0.787	UTR_5_PRIME CG34127	insulator Insulator_Class_II.mE01
2R	8809486	2R_8809486_SNP [dm3] 2R_12921981_SNP [dm6]	C	T	3.490e^-4	0.787	SYNONYMOUS_CODING NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4534033	3L_4534033_SNP [dm3] 3L_4534033_SNP [dm6]	C	A	3.490e^-4	0.787	INTRON CG11353
X	15968042	X_15968042_SNP [dm3] X_16074009_SNP [dm6]	C	G	3.496e^-4	0.787	UPSTREAM Nipsnap DOWNSTREAM Tob INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18031236	2L_18031236_SNP [dm3] 2L_18031236_SNP [dm6]	A	C	3.511e^-4	0.787	INTRON rdo
2L	4165739	2L_4165739_SNP [dm3] 2L_4165739_SNP [dm6]	T	C	3.517e^-4	0.787	SYNONYMOUS_CODING Or24a
3L	12049981	3L_12049981_SNP [dm3] 3L_12056881_SNP [dm6]	T	A	3.524e^-4	0.787	UPSTREAM rols INTRON rols	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2690491	3L_2690491_SNP [dm3] 3L_2690491_SNP [dm6]	T	C	3.538e^-4	0.787	INTRON Fife
2R	10422286	2R_10422286_SNP [dm3] 2R_14534781_SNP [dm6]	A	T	3.543e^-4	0.787	INTRON ttv
3L	3670679	3L_3670679_SNP [dm3] 3L_3670679_SNP [dm6]	A	G	3.544e^-4	0.787	INTERGENIC
3L	3670689	3L_3670689_SNP [dm3] 3L_3670689_SNP [dm6]	T	A	3.544e^-4	0.787	INTERGENIC
3L	3670690	3L_3670690_SNP [dm3] 3L_3670690_SNP [dm6]	A	G	3.544e^-4	0.787	INTERGENIC
2L	18343559	2L_18343559_SNP [dm3] 2L_18343559_SNP [dm6]	A	T	3.551e^-4	0.787	INTRON Fas3
3R	26251997	3R_26251997_SNP [dm3] 3R_30426275_SNP [dm6]	T	C	3.561e^-4	0.787	SYNONYMOUS_CODING CG2218	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9824243	2R_9824243_SNP [dm3] 2R_13936738_SNP [dm6]	A	T	3.572e^-4	0.787	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25032260	3R_25032260_SNP [dm3] 3R_29206538_SNP [dm6]	A	G	3.584e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3202757	2L_3202757_SNP [dm3] 2L_3202757_SNP [dm6]	C	T	3.586e^-4	0.787	INTERGENIC
2L	3202765	2L_3202765_SNP [dm3] 2L_3202765_SNP [dm6]	G	A	3.586e^-4	0.787	INTERGENIC
3L	11123889	3L_11123889_SNP [dm3] 3L_11130789_SNP [dm6]	C	A	3.597e^-4	0.787	UPSTREAM nol INTRON CG42575
X	14748861	X_14748861_SNP [dm3] X_14854828_SNP [dm6]	T	C	3.608e^-4	0.787	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad
3L	13071700	3L_13071700_SNP [dm3] 3L_13078600_SNP [dm6]	C	T	3.614e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14102639	3L_14102639_SNP [dm3] 3L_14109539_SNP [dm6]	C	G	3.630e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_zfh1
2R	2515954	2R_2515954_SNP [dm3] 2R_6628449_SNP [dm6]	T	C	3.637e^-4	0.787	INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19980440	2L_19980440_INS [dm3] 2L_19980440_INS [dm6]	C	CATA	3.651e^-4	0.787	DOWNSTREAM CR43620 INTRON CG43861
2L	11400551	2L_11400551_SNP [dm3] 2L_11400551_SNP [dm6]	C	A	3.678e^-4	0.787	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	7840261	3L_7840261_SNP [dm3] 3L_7847161_SNP [dm6]	T	A	3.692e^-4	0.787	INTRON Pdp1
X	14748458	X_14748458_SNP [dm3] X_14854425_SNP [dm6]	T	A	3.701e^-4	0.787	UTR_3_PRIME CG9519 INTRON Flo2
X	14748945	X_14748945_SNP [dm3] X_14854912_SNP [dm6]	A	T	3.701e^-4	0.787	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad
X	14749512	X_14749512_SNP [dm3] X_14855479_SNP [dm6]	C	T	3.701e^-4	0.787	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9672867	2R_9672867_INS [dm3] 2R_13785362_INS [dm6]	T	TT	3.708e^-4	0.787	DOWNSTREAM CR43810 INTRON Cpr50Ca
3L	8565198	3L_8565198_SNP [dm3] 3L_8572098_SNP [dm6]	G	A	3.723e^-4	0.787	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea DOWNSTREAM mir-190
2R	11082510	2R_11082510_SNP [dm3] 2R_15195005_SNP [dm6]	T	G	3.725e^-4	0.787	UPSTREAM CG43829 INTERGENIC
2L	8851968	2L_8851968_INS [dm3] 2L_8851968_INS [dm6]	T	TG	3.728e^-4	0.787	DOWNSTREAM CR45365 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	4630068	2L_4630068_SNP [dm3] 2L_4630068_SNP [dm6]	T	C	3.747e^-4	0.787	INTERGENIC
2L	4669817	2L_4669817_SNP [dm3] 2L_4669817_SNP [dm6]	C	T	3.747e^-4	0.787	INTERGENIC
2L	4670723	2L_4670723_SNP [dm3] 2L_4670723_SNP [dm6]	T	A	3.747e^-4	0.787	INTERGENIC
2L	4741260	2L_4741260_INS [dm3] 2L_4741260_INS [dm6]	G	GG	3.747e^-4	0.787	INTRON CG15630
2L	4744221	2L_4744221_SNP [dm3] 2L_4744221_SNP [dm6]	T	A	3.747e^-4	0.787	INTRON CG15630
2L	4744223	2L_4744223_SNP [dm3] 2L_4744223_SNP [dm6]	T	A	3.747e^-4	0.787	INTRON CG15630
2L	4758852	2L_4758852_SNP [dm3] 2L_4758852_SNP [dm6]	A	G	3.747e^-4	0.787	INTRON CG15630
2L	4761680	2L_4761680_SNP [dm3] 2L_4761680_SNP [dm6]	C	T	3.747e^-4	0.787	INTRON CG15630
2L	4761711	2L_4761711_INS [dm3] 2L_4761711_INS [dm6]	G	GT	3.747e^-4	0.787	INTRON CG15630
2L	4761713	2L_4761713_SNP [dm3] 2L_4761713_SNP [dm6]	T	A	3.747e^-4	0.787	INTRON CG15630
2L	4761718	2L_4761718_SNP [dm3] 2L_4761718_SNP [dm6]	C	A	3.747e^-4	0.787	INTRON CG15630
2L	4761719	2L_4761719_SNP [dm3] 2L_4761719_SNP [dm6]	T	A	3.747e^-4	0.787	INTRON CG15630
2L	4761722	2L_4761722_DEL [dm3] 2L_4761722_DEL [dm6]	TT	A	3.747e^-4	0.787	INTRON CG15630
2L	4761725	2L_4761725_SNP [dm3] 2L_4761725_SNP [dm6]	A	G	3.747e^-4	0.787	INTRON CG15630
2L	4762036	2L_4762036_SNP [dm3] 2L_4762036_SNP [dm6]	A	G	3.747e^-4	0.787	UPSTREAM CG42523 INTRON CG15630
2L	4765734	2L_4765734_SNP [dm3] 2L_4765734_SNP [dm6]	C	T	3.747e^-4	0.787	INTRON CG15630
2L	4767944	2L_4767944_SNP [dm3] 2L_4767944_SNP [dm6]	A	T	3.747e^-4	0.787	INTRON CG15630
2L	4768918	2L_4768918_SNP [dm3] 2L_4768918_SNP [dm6]	G	C	3.747e^-4	0.787	INTRON CG15630
2L	4998902	2L_4998902_SNP [dm3] 2L_4998902_SNP [dm6]	G	C	3.747e^-4	0.787	INTRON Rtnl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_Trl
2L	7455510	2L_7455510_SNP [dm3] 2L_7455510_SNP [dm6]	T	C	3.747e^-4	0.787	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_HSA
2L	7456275	2L_7456275_SNP [dm3] 2L_7456275_SNP [dm6]	A	C	3.747e^-4	0.787	NON_SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
2R	1417537	2R_1417537_INS [dm3] 2R_5530032_INS [dm6]	A	ACACTAGAATAAC...	3.747e^-4	0.787	INTRON CG30438
2R	1419688	2R_1419688_SNP [dm3] 2R_5532183_SNP [dm6]	A	C	3.747e^-4	0.787	INTRON CG30438
2R	1423578	2R_1423578_SNP [dm3] 2R_5536073_SNP [dm6]	C	T	3.747e^-4	0.787	INTRON CG30438
2R	5954230	2R_5954230_SNP [dm3] 2R_10066725_SNP [dm6]	A	G	3.747e^-4	0.787	START_GAINED mRpL42 UTR_5_PRIME mRpL42 UPSTREAM mRpL42 & 1 other DOWNSTREAM cdc2rk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18343930	2L_18343930_SNP [dm3] 2L_18343930_SNP [dm6]	C	T	3.748e^-4	0.787	INTRON Fas3
3R	13319447	3R_13319447_SNP [dm3] 3R_17493725_SNP [dm6]	G	C	3.755e^-4	0.787	INTRON Dscam3
3R	13319450	3R_13319450_SNP [dm3] 3R_17493728_SNP [dm6]	T	A	3.755e^-4	0.787	INTRON Dscam3
3L	7283447	3L_7283447_INS [dm3] 3L_7290347_INS [dm6]	T	TC	3.758e^-4	0.787	INTRON unc-13-4A
3L	7283450	3L_7283450_SNP [dm3] 3L_7290350_SNP [dm6]	A	C	3.758e^-4	0.787	INTRON unc-13-4A
3L	7283456	3L_7283456_SNP [dm3] 3L_7290356_SNP [dm6]	G	C	3.758e^-4	0.787	INTRON unc-13-4A
3L	7283466	3L_7283466_SNP [dm3] 3L_7290366_SNP [dm6]	T	A	3.758e^-4	0.787	INTRON unc-13-4A
3L	7283484	3L_7283484_SNP [dm3] 3L_7290384_SNP [dm6]	A	C	3.758e^-4	0.787	INTRON unc-13-4A
3R	15760960	3R_15760960_SNP [dm3] 3R_19935238_SNP [dm6]	T	C	3.759e^-4	0.787	UPSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5244901	3L_5244901_SNP [dm3] 3L_5251801_SNP [dm6]	T	C	3.760e^-4	0.787	INTRON shep
2L	8084353	2L_8084353_SNP [dm3] 2L_8084353_SNP [dm6]	T	G	3.771e^-4	0.787	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	4572217	X_4572217_INS [dm3] X_4678184_INS [dm6]	G	GG	3.774e^-4	0.787	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4165790	2L_4165790_SNP [dm3] 2L_4165790_SNP [dm6]	G	T	3.780e^-4	0.787	SYNONYMOUS_CODING Or24a
2R	8186077	2R_8186077_SNP [dm3] 2R_12298572_SNP [dm6]	A	G	3.799e^-4	0.787	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850 & 1 other
X	3003855	X_3003855_SNP [dm3] X_3109822_SNP [dm6]	A	G	3.800e^-4	0.787	INTRON kirre
3L	7282284	3L_7282284_SNP [dm3] 3L_7289184_SNP [dm6]	T	C	3.807e^-4	0.787	INTRON unc-13-4A
3R	10328503	3R_10328503_SNP [dm3] 3R_14502781_SNP [dm6]	A	G	3.817e^-4	0.787	INTRON CR44177
X	8403439	X_8403439_SNP [dm3] X_8509406_SNP [dm6]	A	C	3.819e^-4	0.787	UPSTREAM CG33181 INTRON CG33181
3R	6764531	3R_6764531_DEL [dm3] 3R_10938809_DEL [dm6]	GCAGGTGGG	G	3.824e^-4	0.787	INTERGENIC
X	5302934	X_5302934_SNP [dm3] X_5408901_SNP [dm6]	A	C	3.834e^-4	0.787	INTRON NAAT1	TF binding site BDTNP1_TFBS_twi
X	14748009	X_14748009_SNP [dm3] X_14853976_SNP [dm6]	T	A	3.845e^-4	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
2L	9239119	2L_9239119_SNP [dm3] 2L_9239119_SNP [dm6]	G	A	3.855e^-4	0.787	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_cad
2L	16990628	2L_16990628_SNP [dm3] 2L_16990628_SNP [dm6]	A	G	3.865e^-4	0.787	INTRON beat-IIIb
3L	11598825	3L_11598825_DEL [dm3] 3L_11605725_DEL [dm6]	AA	A	3.897e^-4	0.787	UTR_3_PRIME CG6091 DOWNSTREAM CG6091 & 1 other
3R	6732601	3R_6732601_DEL [dm3] 3R_10906879_DEL [dm6]	GATTTAATTGGGTATTTCTG...	G	3.924e^-4	0.787	INTERGENIC
3R	20377526	3R_20377526_SNP [dm3] 3R_24551804_SNP [dm6]	T	C	3.928e^-4	0.787	SYNONYMOUS_CODING Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6850528	2L_6850528_SNP [dm3] 2L_6850528_SNP [dm6]	A	G	3.929e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6850538	2L_6850538_SNP [dm3] 2L_6850538_SNP [dm6]	G	C	3.929e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13150175	2L_13150175_SNP [dm3] 2L_13150175_SNP [dm6]	G	A	3.930e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7283452	3L_7283452_SNP [dm3] 3L_7290352_SNP [dm6]	G	T	3.931e^-4	0.787	INTRON unc-13-4A
2L	16380574	2L_16380574_INS [dm3] 2L_16380574_INS [dm6]	A	ATGGTCA	3.944e^-4	0.787	INTERGENIC
2L	11406351	2L_11406351_SNP [dm3] 2L_11406351_SNP [dm6]	T	C	3.945e^-4	0.787	INTERGENIC	regulatory region REDfly_CRMs
3R	12152865	3R_12152865_SNP [dm3] 3R_16327143_SNP [dm6]	A	C	3.953e^-4	0.787	SYNONYMOUS_CODING CG17929 UPSTREAM CG17930 INTRON Sulf1
3R	3750941	3R_3750941_SNP [dm3] 3R_7925219_SNP [dm6]	C	T	3.954e^-4	0.787	UTR_3_PRIME dsx DOWNSTREAM lds
3R	27476539	3R_27476539_SNP [dm3] 3R_31650817_SNP [dm6]	C	T	3.956e^-4	0.787	INTRON kek6
3L	4534413	3L_4534413_SNP [dm3] 3L_4534413_SNP [dm6]	G	A	3.956e^-4	0.787	INTRON CG11353
2R	9768093	2R_9768093_SNP [dm3] 2R_13880588_SNP [dm6]	G	A	3.976e^-4	0.787	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
X	3003807	X_3003807_DEL [dm3] X_3109774_DEL [dm6]	GTT	A	3.980e^-4	0.787	INTRON kirre
3R	3447013	3R_3447013_SNP [dm3] 3R_7621291_SNP [dm6]	A	C	3.992e^-4	0.787	INTRON CG34127
3R	18188154	3R_18188154_SNP [dm3] 3R_22362432_SNP [dm6]	C	G	4.028e^-4	0.787	UPSTREAM CG7071 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25952522	3R_25952522_SNP [dm3] 3R_30126800_SNP [dm6]	T	C	4.085e^-4	0.787	SYNONYMOUS_CODING Ppi1	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13410342	2R_13410342_SNP [dm3] 2R_17522837_SNP [dm6]	G	T	4.086e^-4	0.787	INTRON Patronin
2L	18013576	2L_18013576_SNP [dm3] 2L_18013576_SNP [dm6]	A	G	4.087e^-4	0.787	INTRON rdo	regulatory region REDfly_CRMs
3L	11039188	3L_11039188_SNP [dm3] 3L_11046088_SNP [dm6]	A	T	4.098e^-4	0.787	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	15224655	3R_15224655_SNP [dm3] 3R_19398933_SNP [dm6]	T	C	4.101e^-4	0.787	UPSTREAM CG31244 INTRON Ino80
3R	13364442	3R_13364442_SNP [dm3] 3R_17538720_SNP [dm6]	C	T	4.106e^-4	0.787	SYNONYMOUS_CODING l_3_07882
3R	13364463	3R_13364463_SNP [dm3] 3R_17538741_SNP [dm6]	C	T	4.106e^-4	0.787	SYNONYMOUS_CODING l_3_07882
3R	16256069	3R_16256069_SNP [dm3] 3R_20430347_SNP [dm6]	G	A	4.107e^-4	0.787	INTRON Gfrl
3L	10135550	3L_10135550_SNP [dm3] 3L_10142450_SNP [dm6]	C	A	4.112e^-4	0.787	INTERGENIC
X	14247040	X_14247040_SNP [dm3] X_14353007_SNP [dm6]	C	G	4.114e^-4	0.787	INTRON dpr8
2L	8333363	2L_8333363_SNP [dm3] 2L_8333363_SNP [dm6]	G	A	4.114e^-4	0.787	DOWNSTREAM CG14275 INTERGENIC
3L	5362251	3L_5362251_SNP [dm3] 3L_5369151_SNP [dm6]	G	T	4.117e^-4	0.787	UPSTREAM CR44515 INTERGENIC
3R	14768880	3R_14768880_SNP [dm3] 3R_18943158_SNP [dm6]	C	T	4.122e^-4	0.787	INTRON CG42613
X	15564888	X_15564888_SNP [dm3] X_15670855_SNP [dm6]	T	C	4.127e^-4	0.787	UTR_5_PRIME CG15646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	13467012	3L_13467012_SNP [dm3] 3L_13473912_SNP [dm6]	A	G	4.135e^-4	0.787	INTRON CG10089
X	14750851	X_14750851_SNP [dm3] X_14856818_SNP [dm6]	T	C	4.140e^-4	0.787	UPSTREAM CG9519 INTRON Flo2
X	8470660	X_8470660_SNP [dm3] X_8576627_SNP [dm6]	G	A	4.149e^-4	0.787	INTRON CG12065
2R	6821166	2R_6821166_SNP [dm3] 2R_10933661_SNP [dm6]	G	C	4.177e^-4	0.787	INTERGENIC
3L	12654435	3L_12654435_SNP [dm3] 3L_12661335_SNP [dm6]	C	T	4.177e^-4	0.787	UPSTREAM CR44552 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14216643	2R_14216643_SNP [dm3] 2R_18329138_SNP [dm6]	T	C	4.182e^-4	0.787	INTRON sbb
X	11899332	X_11899332_SNP [dm3] X_12005299_SNP [dm6]	T	G	4.186e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18350086	2L_18350086_SNP [dm3] 2L_18350086_SNP [dm6]	C	T	4.194e^-4	0.787	INTRON Fas3
2L	18350087	2L_18350087_SNP [dm3] 2L_18350087_SNP [dm6]	T	C	4.194e^-4	0.787	INTRON Fas3
2L	2554222	2L_2554222_SNP [dm3] 2L_2554222_SNP [dm6]	G	A	4.208e^-4	0.787	INTERGENIC
3L	8999169	3L_8999169_SNP [dm3] 3L_9006069_SNP [dm6]	C	G	4.231e^-4	0.787	INTRON Doc3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8999170	3L_8999170_SNP [dm3] 3L_9006070_SNP [dm6]	A	G	4.231e^-4	0.787	INTRON Doc3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8999578	3L_8999578_SNP [dm3] 3L_9006478_SNP [dm6]	C	A	4.231e^-4	0.787	NON_SYNONYMOUS_CODING Doc3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18321244	2R_18321244_SNP [dm3] 2R_22433739_SNP [dm6]	T	C	4.234e^-4	0.787	INTERGENIC
3L	14037544	3L_14037544_SNP [dm3] 3L_14044444_SNP [dm6]	C	T	4.243e^-4	0.787	SYNONYMOUS_CODING blue DOWNSTREAM Hsc70Cb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4673713	2L_4673713_SNP [dm3] 2L_4673713_SNP [dm6]	C	T	4.245e^-4	0.787	INTERGENIC
2L	4758783	2L_4758783_SNP [dm3] 2L_4758783_SNP [dm6]	G	A	4.245e^-4	0.787	INTRON CG15630
3L	3007170	3L_3007170_SNP [dm3] 3L_3007170_SNP [dm6]	A	G	4.246e^-4	0.787	INTRON FMRFaR
2L	14436618	2L_14436618_SNP [dm3] 2L_14436618_SNP [dm6]	C	G	4.255e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	14436638	2L_14436638_SNP [dm3] 2L_14436638_SNP [dm6]	A	T	4.255e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	1939497	2L_1939497_SNP [dm3] 2L_1939497_SNP [dm6]	C	A	4.260e^-4	0.787	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11106323	3L_11106323_SNP [dm3] 3L_11113223_SNP [dm6]	C	A	4.260e^-4	0.787	DOWNSTREAM fd68A INTRON Sod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	5203960	X_5203960_SNP [dm3] X_5309927_SNP [dm6]	A	G	4.260e^-4	0.787	UPSTREAM Cdk7 DOWNSTREAM TrxT INTRON snf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_jumu
3R	6723118	3R_6723118_SNP [dm3] 3R_10897396_SNP [dm6]	A	C	4.261e^-4	0.787	UPSTREAM CR45577 DOWNSTREAM Leash & 1 other INTERGENIC
3L	9080379	3L_9080379_INS [dm3] 3L_9087279_INS [dm6]	A	AA	4.266e^-4	0.787	INTRON Tequila
X	9183807	X_9183807_INS [dm3] X_9289774_INS [dm6]	T	TC	4.268e^-4	0.787	INTRON lz
2L	9301143	2L_9301143_SNP [dm3] 2L_9301143_SNP [dm6]	T	C	4.282e^-4	0.787	UTR_3_PRIME Ggamma30A
3L	4986192	3L_4986192_SNP [dm3] 3L_4986192_SNP [dm6]	C	T	4.290e^-4	0.787	INTRON Con
X	13564863	X_13564863_DEL [dm3] X_13670830_DEL [dm6]	TTTGGGAACCTT...	T	4.291e^-4	0.787	INTRON CG15760	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9378917	X_9378917_SNP [dm3] X_9484884_SNP [dm6]	A	C	4.300e^-4	0.787	INTRON mgl
2L	18362410	2L_18362410_DEL [dm3] 2L_18362410_DEL [dm6]	GGCCATG	G	4.301e^-4	0.787	INTRON Fas3
3L	9804618	3L_9804618_SNP [dm3] 3L_9811518_SNP [dm6]	T	A	4.302e^-4	0.787	INTERGENIC
X	3905086	X_3905086_SNP [dm3] X_4011053_SNP [dm6]	A	C	4.303e^-4	0.787	INTERGENIC
3R	516763	3R_516763_INS [dm3] 3R_4691041_INS [dm6]	A	AACGAATAA	4.309e^-4	0.787	UPSTREAM CG33927 INTRON CG43427	transposable element FlyBase
3L	6299955	3L_6299955_SNP [dm3] 3L_6306855_SNP [dm6]	A	T	4.315e^-4	0.787	DOWNSTREAM CR45113 INTERGENIC
3R	6849806	3R_6849806_SNP [dm3] 3R_11024084_SNP [dm6]	T	G	4.325e^-4	0.787	INTRON CG34114
X	5688083	X_5688083_SNP [dm3] X_5794050_SNP [dm6]	G	A	4.326e^-4	0.787	SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_sens
2L	19436431	2L_19436431_SNP [dm3] 2L_19436431_SNP [dm6]	C	A	4.327e^-4	0.787	SYNONYMOUS_CODING CG10237 DOWNSTREAM Rab9	TF binding site mE1_TFBS_chinmo
2R	7603527	2R_7603527_SNP [dm3] 2R_11716022_SNP [dm6]	C	A	4.338e^-4	0.787	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	11536453	3L_11536453_SNP [dm3] 3L_11543353_SNP [dm6]	C	G	4.341e^-4	0.787	INTRON Mob2
3L	11536456	3L_11536456_SNP [dm3] 3L_11543356_SNP [dm6]	T	A	4.341e^-4	0.787	INTRON Mob2
3R	15338227	3R_15338227_DEL [dm3] 3R_19512505_DEL [dm6]	CATGAATG	C	4.342e^-4	0.787	INTRON Dys
2R	15448800	2R_15448800_SNP [dm3] 2R_19561295_SNP [dm6]	G	A	4.342e^-4	0.787	INTRON sm
3R	10243135	3R_10243135_SNP [dm3] 3R_14417413_SNP [dm6]	A	G	4.344e^-4	0.787	INTRON cv-c	TF binding site mE1_TFBS_HSA
2L	6473957	2L_6473957_SNP [dm3] 2L_6473957_SNP [dm6]	G	T	4.351e^-4	0.787	UPSTREAM mmy DOWNSTREAM CG9536 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18351034	2L_18351034_SNP [dm3] 2L_18351034_SNP [dm6]	A	T	4.353e^-4	0.787	INTRON Fas3
3R	15154020	3R_15154020_SNP [dm3] 3R_19328298_SNP [dm6]	A	G	4.367e^-4	0.787	UPSTREAM CR44175 INTERGENIC
2L	12080611	2L_12080611_SNP [dm3] 2L_12080611_SNP [dm6]	T	C	4.376e^-4	0.787	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12080612	2L_12080612_SNP [dm3] 2L_12080612_SNP [dm6]	T	A	4.376e^-4	0.787	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5100165	2L_5100165_SNP [dm3] 2L_5100165_SNP [dm6]	C	G	4.376e^-4	0.787	UTR_5_PRIME CG8680 UPSTREAM Msp300 DOWNSTREAM CG4230	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	14745737	X_14745737_SNP [dm3] X_14851704_SNP [dm6]	C	T	4.381e^-4	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2
X	14745809	X_14745809_SNP [dm3] X_14851776_SNP [dm6]	T	C	4.381e^-4	0.787	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_sens
3L	1078420	3L_1078420_SNP [dm3] 3L_1078420_SNP [dm6]	C	T	4.388e^-4	0.787	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1078429	3L_1078429_SNP [dm3] 3L_1078429_SNP [dm6]	T	A	4.388e^-4	0.787	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1078491	3L_1078491_SNP [dm3] 3L_1078491_SNP [dm6]	A	G	4.388e^-4	0.787	INTRON bab1	TF binding site mE1_TFBS_HSA
2L	20791136	2L_20791136_SNP [dm3] 2L_20791136_SNP [dm6]	G	T	4.390e^-4	0.787	INTRON vari
2R	5518137	2R_5518137_SNP [dm3] 2R_9630632_SNP [dm6]	T	C	4.390e^-4	0.787	INTRON Mmp2
3L	7724963	3L_7724963_SNP [dm3] 3L_7731863_SNP [dm6]	G	T	4.390e^-4	0.787	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo
X	5687954	X_5687954_SNP [dm3] X_5793921_SNP [dm6]	C	A	4.390e^-4	0.787	SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	5688107	X_5688107_SNP [dm3] X_5794074_SNP [dm6]	G	A	4.390e^-4	0.787	SYNONYMOUS_CODING CG12239	TF binding site mE1_TFBS_sens
2L	1939376	2L_1939376_SNP [dm3] 2L_1939376_SNP [dm6]	G	A	4.393e^-4	0.787	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11429878	3L_11429878_SNP [dm3] 3L_11436778_SNP [dm6]	G	A	4.395e^-4	0.787	DOWNSTREAM CR44548 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18364290	2L_18364290_DEL [dm3] 2L_18364290_DEL [dm6]	CA	C	4.404e^-4	0.787	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18364295	2L_18364295_SNP [dm3] 2L_18364295_SNP [dm6]	T	G	4.404e^-4	0.787	INTRON Fas3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18366273	2L_18366273_SNP [dm3] 2L_18366273_SNP [dm6]	C	A	4.404e^-4	0.787	INTRON Fas3
2L	7239824	2L_7239824_SNP [dm3] 2L_7239824_SNP [dm6]	T	A	4.405e^-4	0.787	INTRON Ndae1
2L	5393576	2L_5393576_INS [dm3] 2L_5393576_INS [dm6]	T	TTAAGATATGCT...	4.413e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16255980	3R_16255980_SNP [dm3] 3R_20430258_SNP [dm6]	C	T	4.418e^-4	0.787	INTRON Gfrl
3L	2787469	3L_2787469_SNP [dm3] 3L_2787469_SNP [dm6]	G	A	4.419e^-4	0.787	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17938192	3L_17938192_SNP [dm3] 3L_17945092_SNP [dm6]	C	A	4.420e^-4	0.787	INTRON CG43174
2R	10548790	2R_10548790_SNP [dm3] 2R_14661285_SNP [dm6]	A	T	4.426e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11585591	3L_11585591_INS [dm3] 3L_11592491_INS [dm6]	A	AAAGTTGGGCA...	4.428e^-4	0.787	DOWNSTREAM CR45443 & 1 other EXON CR45672 & 1 other
3L	11371407	3L_11371407_SNP [dm3] 3L_11378307_SNP [dm6]	G	C	4.449e^-4	0.787	INTERGENIC
3L	11811113	3L_11811113_SNP [dm3] 3L_11818013_SNP [dm6]	A	G	4.449e^-4	0.787	UTR_3_PRIME CG5946 INTRON CG5946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11811137	3L_11811137_SNP [dm3] 3L_11818037_SNP [dm6]	A	T	4.449e^-4	0.787	UTR_3_PRIME CG5946 INTRON CG5946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11811139	3L_11811139_SNP [dm3] 3L_11818039_SNP [dm6]	A	G	4.449e^-4	0.787	UTR_3_PRIME CG5946 INTRON CG5946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12681450	3L_12681450_SNP [dm3] 3L_12688350_SNP [dm6]	G	A	4.449e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5145074	3L_5145074_SNP [dm3] 3L_5151974_SNP [dm6]	T	C	4.449e^-4	0.787	SYNONYMOUS_CODING Gen UPSTREAM Srp54k	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19565130	3R_19565130_SNP [dm3] 3R_23739408_SNP [dm6]	C	G	4.449e^-4	0.787	INTRON Hmgcr
X	14570667	X_14570667_SNP [dm3] X_14676634_SNP [dm6]	A	C	4.449e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14570693	X_14570693_SNP [dm3] X_14676660_SNP [dm6]	G	T	4.449e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1613116	3L_1613116_SNP [dm3] 3L_1613116_SNP [dm6]	T	C	4.452e^-4	0.787	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other
3L	18156109	3L_18156109_SNP [dm3] 3L_18163009_SNP [dm6]	C	T	4.455e^-4	0.787	UPSTREAM CG13699 INTERGENIC
X	11899167	X_11899167_SNP [dm3] X_12005134_SNP [dm6]	G	T	4.462e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12156801	3L_12156801_SNP [dm3] 3L_12163701_SNP [dm6]	G	A	4.466e^-4	0.787	UTR_5_PRIME CG9760 DOWNSTREAM Rh7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	4585151	3R_4585151_SNP [dm3] 3R_8759429_SNP [dm6]	C	G	4.476e^-4	0.787	INTRON CG11768 & 1 other
3L	1078458	3L_1078458_INS [dm3] 3L_1078458_INS [dm6]	G	GC	4.479e^-4	0.787	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7283488	3L_7283488_SNP [dm3] 3L_7290388_SNP [dm6]	G	A	4.483e^-4	0.787	INTRON unc-13-4A
2R	9411298	2R_9411298_SNP [dm3] 2R_13523793_SNP [dm6]	G	T	4.485e^-4	0.787	DOWNSTREAM CG13331 INTRON Vmat
3L	7838101	3L_7838101_SNP [dm3] 3L_7845001_SNP [dm6]	A	G	4.485e^-4	0.787	INTRON Pdp1	regulatory region REDfly_CRMs
X	3891770	X_3891770_SNP [dm3] X_3997737_SNP [dm6]	A	G	4.487e^-4	0.787	INTERGENIC
2R	6112219	2R_6112219_SNP [dm3] 2R_10224714_SNP [dm6]	A	T	4.512e^-4	0.787	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7369001	2R_7369001_SNP [dm3] 2R_11481496_SNP [dm6]	A	T	4.525e^-4	0.787	INTRON inv
3L	14762448	3L_14762448_SNP [dm3] 3L_14769348_SNP [dm6]	A	T	4.525e^-4	0.787	UTR_3_PRIME mop UPSTREAM CG17173
3R	15337994	3R_15337994_SNP [dm3] 3R_19512272_SNP [dm6]	G	C	4.525e^-4	0.787	INTRON Dys
3L	15509021	3L_15509021_SNP [dm3] 3L_15515921_SNP [dm6]	T	G	4.528e^-4	0.787	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	15509025	3L_15509025_SNP [dm3] 3L_15515925_SNP [dm6]	T	A	4.528e^-4	0.787	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	4572013	X_4572013_SNP [dm3] X_4677980_SNP [dm6]	A	T	4.533e^-4	0.787	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	4572021	X_4572021_SNP [dm3] X_4677988_SNP [dm6]	C	T	4.533e^-4	0.787	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	15338318	3R_15338318_SNP [dm3] 3R_19512596_SNP [dm6]	C	T	4.534e^-4	0.787	INTRON Dys
3L	11937643	3L_11937643_SNP [dm3] 3L_11944543_SNP [dm6]	T	A	4.535e^-4	0.787	NON_SYNONYMOUS_CODING CG5883
3L	11938277	3L_11938277_SNP [dm3] 3L_11945177_SNP [dm6]	A	C	4.535e^-4	0.787	UPSTREAM CG5883 DOWNSTREAM mir-285 INTERGENIC
2R	7351776	2R_7351776_SNP [dm3] 2R_11464271_SNP [dm6]	C	T	4.549e^-4	0.787	UTR_3_PRIME E_Pc_ DOWNSTREAM E_Pc_
3L	1078686	3L_1078686_SNP [dm3] 3L_1078686_SNP [dm6]	A	C	4.558e^-4	0.787	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15334367	3R_15334367_SNP [dm3] 3R_19508645_SNP [dm6]	T	A	4.570e^-4	0.787	UPSTREAM Dys INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17951750	3L_17951750_SNP [dm3] 3L_17958650_SNP [dm6]	C	T	4.572e^-4	0.787	INTRON Eip75B
X	14752160	X_14752160_SNP [dm3] X_14858127_SNP [dm6]	G	C	4.574e^-4	0.787	INTRON Flo2
3L	5437275	3L_5437275_SNP [dm3] 3L_5444175_SNP [dm6]	C	T	4.575e^-4	0.787	INTERGENIC
2L	7457541	2L_7457541_SNP [dm3] 2L_7457541_SNP [dm6]	C	A	4.576e^-4	0.787	UPSTREAM Gr28b INTRON Gr28b
3L	12277874	3L_12277874_SNP [dm3] 3L_12284774_SNP [dm6]	G	T	4.578e^-4	0.787	INTERGENIC
3R	4059733	3R_4059733_DEL [dm3] 3R_8234011_DEL [dm6]	AA	A	4.581e^-4	0.787	UPSTREAM CR45549 INTRON DNApol-iota	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	10779427	2L_10779427_SNP [dm3] 2L_10779427_SNP [dm6]	A	G	4.590e^-4	0.787	INTRON CG31869
2L	11186198	2L_11186198_SNP [dm3] 2L_11186198_SNP [dm6]	C	T	4.590e^-4	0.787	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11947012	2L_11947012_SNP [dm3] 2L_11947012_SNP [dm6]	C	T	4.590e^-4	0.787	UTR_3_PRIME Cry UPSTREAM CG16964 DOWNSTREAM Cry
2L	11947013	2L_11947013_SNP [dm3] 2L_11947013_SNP [dm6]	T	C	4.590e^-4	0.787	UTR_3_PRIME Cry UPSTREAM CG16964 DOWNSTREAM Cry
2L	20224756	2L_20224756_SNP [dm3] 2L_20224756_SNP [dm6]	G	A	4.590e^-4	0.787	INTERGENIC
2L	20224825	2L_20224825_SNP [dm3] 2L_20224825_SNP [dm6]	C	A	4.590e^-4	0.787	INTERGENIC
2L	4623398	2L_4623398_SNP [dm3] 2L_4623398_SNP [dm6]	T	A	4.590e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4639176	2L_4639176_SNP [dm3] 2L_4639176_SNP [dm6]	G	T	4.590e^-4	0.787	INTERGENIC
2L	4743918	2L_4743918_SNP [dm3] 2L_4743918_SNP [dm6]	A	T	4.590e^-4	0.787	INTRON CG15630
2L	4757741	2L_4757741_SNP [dm3] 2L_4757741_SNP [dm6]	A	C	4.590e^-4	0.787	INTRON CG15630
2L	4758215	2L_4758215_SNP [dm3] 2L_4758215_SNP [dm6]	C	T	4.590e^-4	0.787	INTRON CG15630
2L	4762138	2L_4762138_SNP [dm3] 2L_4762138_SNP [dm6]	T	C	4.590e^-4	0.787	UPSTREAM CG42523 INTRON CG15630
2L	4762779	2L_4762779_SNP [dm3] 2L_4762779_SNP [dm6]	G	C	4.590e^-4	0.787	UPSTREAM CG42523 INTRON CG15630
2L	4762860	2L_4762860_SNP [dm3] 2L_4762860_SNP [dm6]	A	G	4.590e^-4	0.787	UPSTREAM CG42523 INTRON CG15630
2L	4764739	2L_4764739_SNP [dm3] 2L_4764739_SNP [dm6]	A	G	4.590e^-4	0.787	DOWNSTREAM CG42523 INTRON CG15630
2L	4764844	2L_4764844_SNP [dm3] 2L_4764844_SNP [dm6]	G	A	4.590e^-4	0.787	DOWNSTREAM CG42523 INTRON CG15630
2L	4767095	2L_4767095_SNP [dm3] 2L_4767095_SNP [dm6]	C	T	4.590e^-4	0.787	INTRON CG15630
2L	4767334	2L_4767334_SNP [dm3] 2L_4767334_SNP [dm6]	G	C	4.590e^-4	0.787	INTRON CG15630
2L	4767956	2L_4767956_SNP [dm3] 2L_4767956_SNP [dm6]	T	A	4.590e^-4	0.787	INTRON CG15630
2L	4768725	2L_4768725_SNP [dm3] 2L_4768725_SNP [dm6]	A	G	4.590e^-4	0.787	INTRON CG15630
2L	4769759	2L_4769759_SNP [dm3] 2L_4769759_SNP [dm6]	T	G	4.590e^-4	0.787	INTRON CG15630
2L	4769767	2L_4769767_SNP [dm3] 2L_4769767_SNP [dm6]	G	T	4.590e^-4	0.787	INTRON CG15630
2L	5404623	2L_5404623_SNP [dm3] 2L_5404623_SNP [dm6]	A	C	4.590e^-4	0.787	UTR_5_PRIME H15 UPSTREAM H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	7105943	2L_7105943_SNP [dm3] 2L_7105943_SNP [dm6]	C	T	4.590e^-4	0.787	INTRON Pvf3
2L	7454122	2L_7454122_SNP [dm3] 2L_7454122_SNP [dm6]	G	A	4.590e^-4	0.787	SYNONYMOUS_CODING Gr28a DOWNSTREAM Gr28b
2R	1324473	2R_1324473_SNP [dm3] 2R_5436968_SNP [dm6]	A	T	4.590e^-4	0.787	INTRON laccase2
2R	1411747	2R_1411747_DEL [dm3] 2R_5524242_DEL [dm6]	TCGAT	T	4.590e^-4	0.787	UPSTREAM CG30438 INTRON CG30438	transposable element FlyBase
2R	1412161	2R_1412161_SNP [dm3] 2R_5524656_SNP [dm6]	C	T	4.590e^-4	0.787	UPSTREAM CG30438 INTRON CG30438
2R	1417621	2R_1417621_SNP [dm3] 2R_5530116_SNP [dm6]	G	T	4.590e^-4	0.787	INTRON CG30438	transposable element FlyBase
2R	1421731	2R_1421731_SNP [dm3] 2R_5534226_SNP [dm6]	T	A	4.590e^-4	0.787	INTRON CG30438	transposable element FlyBase
2R	1422116	2R_1422116_SNP [dm3] 2R_5534611_SNP [dm6]	T	A	4.590e^-4	0.787	INTRON CG30438	transposable element FlyBase
2R	1424096	2R_1424096_SNP [dm3] 2R_5536591_SNP [dm6]	C	T	4.590e^-4	0.787	INTRON CG30438	TF binding site BDTNP1_TFBS_dl
2R	1424122	2R_1424122_SNP [dm3] 2R_5536617_SNP [dm6]	C	T	4.590e^-4	0.787	INTRON CG30438	TF binding site BDTNP1_TFBS_dl
2R	1424144	2R_1424144_DEL [dm3] 2R_5536639_DEL [dm6]	TTTCAATT	CGC	4.590e^-4	0.787	INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1424159	2R_1424159_SNP [dm3] 2R_5536654_SNP [dm6]	G	T	4.590e^-4	0.787	INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6004232	3L_6004232_SNP [dm3] 3L_6011132_SNP [dm6]	A	G	4.591e^-4	0.787	UPSTREAM alphaKap4 INTRON PVRAP
X	3428788	X_3428788_SNP [dm3] X_3534755_SNP [dm6]	A	T	4.599e^-4	0.787	INTRON CG32791	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12328827	X_12328827_SNP [dm3] X_12434794_SNP [dm6]	G	T	4.600e^-4	0.787	INTRON Pkcdelta
2R	4201565	2R_4201565_SNP [dm3] 2R_8314060_SNP [dm6]	C	T	4.601e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16925892	3L_16925892_SNP [dm3] 3L_16932792_SNP [dm6]	A	G	4.614e^-4	0.787	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
2R	9676764	2R_9676764_SNP [dm3] 2R_13789259_SNP [dm6]	A	T	4.627e^-4	0.787	INTERGENIC
3R	15338223	3R_15338223_INS [dm3] 3R_19512501_INS [dm6]	A	AC	4.647e^-4	0.787	INTRON Dys
2L	19272390	2L_19272390_DEL [dm3] 2L_19272390_DEL [dm6]	TGTCTGGAGT	T	4.647e^-4	0.787	EXON CR44190
2L	8084576	2L_8084576_SNP [dm3] 2L_8084576_SNP [dm6]	T	A	4.647e^-4	0.787	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25021101	3R_25021101_DEL [dm3] 3R_29195379_DEL [dm6]	ATTATATATAT...	A	4.657e^-4	0.787	UPSTREAM CG14509 INTERGENIC
3L	5250386	3L_5250386_SNP [dm3] 3L_5257286_SNP [dm6]	T	C	4.691e^-4	0.787	INTRON shep
3L	11812090	3L_11812090_SNP [dm3] 3L_11818990_SNP [dm6]	T	C	4.692e^-4	0.787	INTRON CG5946
3L	12685551	3L_12685551_DEL [dm3] 3L_12692451_DEL [dm6]	ATAAAA	A	4.692e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	12690616	3L_12690616_SNP [dm3] 3L_12697516_SNP [dm6]	A	T	4.692e^-4	0.787	INTRON mirr	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12843405	3L_12843405_SNP [dm3] 3L_12850305_SNP [dm6]	T	C	4.692e^-4	0.787	SYNONYMOUS_CODING Wbp2 UPSTREAM CG10948	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7883391	3L_7883391_SNP [dm3] 3L_7890291_SNP [dm6]	A	G	4.692e^-4	0.787	INTRON CG32365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7883732	3L_7883732_SNP [dm3] 3L_7890632_SNP [dm6]	A	T	4.692e^-4	0.787	INTRON CG32365	TF binding site mE1_TFBS_HSA
3R	8177629	3R_8177629_SNP [dm3] 3R_12351907_SNP [dm6]	T	C	4.692e^-4	0.787	NON_SYNONYMOUS_CODING CG10041 DOWNSTREAM MBD-R2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4764209	X_4764209_SNP [dm3] X_4870176_SNP [dm6]	T	C	4.697e^-4	0.787	INTRON CG42594
3L	18540983	3L_18540983_SNP [dm3] 3L_18547883_SNP [dm6]	C	T	4.699e^-4	0.787	INTERGENIC
2L	10507826	2L_10507826_SNP [dm3] 2L_10507826_SNP [dm6]	A	G	4.719e^-4	0.787	SYNONYMOUS_CODING CG6094 DOWNSTREAM CG7384 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3L	19917475	3L_19917475_SNP [dm3] 3L_19924375_SNP [dm6]	A	G	4.720e^-4	0.787	UTR_3_PRIME CG7770 UPSTREAM Su_z_12 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12495929	3L_12495929_SNP [dm3] 3L_12502829_SNP [dm6]	C	T	4.738e^-4	0.787	SYNONYMOUS_CODING CG10646 DOWNSTREAM CG10681	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15153940	3R_15153940_SNP [dm3] 3R_19328218_SNP [dm6]	T	C	4.738e^-4	0.787	UPSTREAM CR44175 INTERGENIC
3R	15153994	3R_15153994_SNP [dm3] 3R_19328272_SNP [dm6]	T	A	4.738e^-4	0.787	UPSTREAM CR44175 INTERGENIC
3R	15154248	3R_15154248_SNP [dm3] 3R_19328526_SNP [dm6]	C	A	4.738e^-4	0.787	UPSTREAM CR44175 INTERGENIC
3L	10618861	3L_10618861_SNP [dm3] 3L_10625761_SNP [dm6]	T	A	4.740e^-4	0.787	UPSTREAM CG34238 & 1 other INTERGENIC
2L	4743745	2L_4743745_SNP [dm3] 2L_4743745_SNP [dm6]	T	C	4.745e^-4	0.787	INTRON CG15630
X	2907648	X_2907648_MNP [dm3] X_3013615_MNP [dm6]	CAT	GCA	4.745e^-4	0.787	INTRON kirre
2L	4767523	2L_4767523_SNP [dm3] 2L_4767523_SNP [dm6]	T	C	4.748e^-4	0.787	INTRON CG15630
2L	4669784	2L_4669784_SNP [dm3] 2L_4669784_SNP [dm6]	A	C	4.754e^-4	0.787	INTERGENIC
2L	4733779	2L_4733779_SNP [dm3] 2L_4733779_SNP [dm6]	G	A	4.754e^-4	0.787	SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630
2R	1292989	2R_1292989_SNP [dm3] 2R_5405484_SNP [dm6]	G	T	4.754e^-4	0.787	INTERGENIC	transposable element FlyBase
2R	1293056	2R_1293056_SNP [dm3] 2R_5405551_SNP [dm6]	G	A	4.754e^-4	0.787	INTERGENIC	transposable element FlyBase
2R	8426670	2R_8426670_SNP [dm3] 2R_12539165_SNP [dm6]	G	A	4.754e^-4	0.787	INTRON fra
3R	19531173	3R_19531173_SNP [dm3] 3R_23705451_SNP [dm6]	A	G	4.754e^-4	0.787	SYNONYMOUS_CODING CG31414 DOWNSTREAM CG31413 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11527949	3L_11527949_SNP [dm3] 3L_11534849_SNP [dm6]	C	T	4.759e^-4	0.787	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4746701	2L_4746701_SNP [dm3] 2L_4746701_SNP [dm6]	G	T	4.774e^-4	0.787	INTRON CG15630
3R	3447547	3R_3447547_DEL [dm3] 3R_7621825_DEL [dm6]	AGACTCCGCCTTG...	A	4.776e^-4	0.787	INTRON CG34127
2L	4669791	2L_4669791_SNP [dm3] 2L_4669791_SNP [dm6]	C	A	4.789e^-4	0.787	INTERGENIC
3L	2872797	3L_2872797_SNP [dm3] 3L_2872797_SNP [dm6]	C	T	4.791e^-4	0.787	INTRON CG43444
2R	12414436	2R_12414436_SNP [dm3] 2R_16526931_SNP [dm6]	A	G	4.815e^-4	0.787	INTRON Sema-2a
3R	3291558	3R_3291558_SNP [dm3] 3R_7465836_SNP [dm6]	A	G	4.827e^-4	0.787	INTERGENIC
X	15564889	X_15564889_SNP [dm3] X_15670856_SNP [dm6]	C	G	4.829e^-4	0.787	UTR_5_PRIME CG15646	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	2024725	2R_2024725_SNP [dm3] 2R_6137220_SNP [dm6]	G	A	4.839e^-4	0.787	UPSTREAM CG14589 INTRON EcR	TF binding site BDTNP1_TFBS_twi
3L	12601905	3L_12601905_SNP [dm3] 3L_12608805_SNP [dm6]	T	G	4.853e^-4	0.787	UPSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16472598	3R_16472598_SNP [dm3] 3R_20646876_SNP [dm6]	C	T	4.861e^-4	0.787	SPLICE_SITE_REGION GluRIIE INTRON GluRIIE
2L	4140447	2L_4140447_SNP [dm3] 2L_4140447_SNP [dm6]	A	G	4.875e^-4	0.787	INTERGENIC
3R	14514802	3R_14514802_SNP [dm3] 3R_18689080_SNP [dm6]	A	T	4.886e^-4	0.787	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3003820	X_3003820_SNP [dm3] X_3109787_SNP [dm6]	A	T	4.890e^-4	0.787	INTRON kirre
3L	13071834	3L_13071834_DEL [dm3] 3L_13078734_DEL [dm6]	CC	C	4.895e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4733899	2L_4733899_SNP [dm3] 2L_4733899_SNP [dm6]	C	G	4.906e^-4	0.787	NON_SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630
2R	1422950	2R_1422950_SNP [dm3] 2R_5535445_SNP [dm6]	A	C	4.912e^-4	0.787	INTRON CG30438	transposable element FlyBase
3R	25131745	3R_25131745_SNP [dm3] 3R_29306023_SNP [dm6]	A	G	4.922e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14095311	3L_14095311_SNP [dm3] 3L_14102211_SNP [dm6]	C	A	4.926e^-4	0.787	INTERGENIC
3R	26077303	3R_26077303_SNP [dm3] 3R_30251581_SNP [dm6]	T	A	4.927e^-4	0.787	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	12584604	3L_12584604_INS [dm3] 3L_12591504_INS [dm6]	A	ATTTTTTTTTTAG...	4.932e^-4	0.787	INTRON ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	14958097	2R_14958097_SNP [dm3] 2R_19070592_SNP [dm6]	C	G	4.935e^-4	0.787	INTRON 5-HT1A
2R	5665740	2R_5665740_SNP [dm3] 2R_9778235_SNP [dm6]	C	T	4.945e^-4	0.787	INTRON CG1688
2L	8722459	2L_8722459_SNP [dm3] 2L_8722459_SNP [dm6]	C	A	4.948e^-4	0.787	INTRON raw
2L	3583462	2L_3583462_SNP [dm3] 2L_3583462_SNP [dm6]	G	A	4.952e^-4	0.787	INTERGENIC
2L	3583470	2L_3583470_SNP [dm3] 2L_3583470_SNP [dm6]	T	C	4.952e^-4	0.787	INTERGENIC
3L	11455603	3L_11455603_SNP [dm3] 3L_11462503_SNP [dm6]	A	G	4.954e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	14090819	2L_14090819_SNP [dm3] 2L_14090819_SNP [dm6]	C	T	4.982e^-4	0.787	UTR_3_PRIME nAChRalpha5
3L	22836321	3L_22836321_SNP [dm3] 3L_22843221_SNP [dm6]	A	T	4.994e^-4	0.787	UPSTREAM tRNA:CR32456 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14749221	X_14749221_SNP [dm3] X_14855188_SNP [dm6]	C	T	4.999e^-4	0.787	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14749239	X_14749239_SNP [dm3] X_14855206_SNP [dm6]	A	G	4.999e^-4	0.787	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2787505	3L_2787505_SNP [dm3] 3L_2787505_SNP [dm6]	A	C	5.003e^-4	0.787	UTR_3_PRIME CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9781811	3R_9781811_SNP [dm3] 3R_13956089_SNP [dm6]	A	T	5.004e^-4	0.787	INTERGENIC
3L	7283508	3L_7283508_SNP [dm3] 3L_7290408_SNP [dm6]	A	T	5.008e^-4	0.787	INTRON unc-13-4A
2L	2877485	2L_2877485_DEL [dm3] 2L_2877485_DEL [dm6]	GTTTTC	G	5.013e^-4	0.787	UPSTREAM CG31950 DOWNSTREAM CG8814 INTRON Prx6005	TF binding site BDTNP1_TFBS_dl
3L	21201276	3L_21201276_SNP [dm3] 3L_21208176_SNP [dm6]	C	A	5.025e^-4	0.787	UTR_3_PRIME CG10510 DOWNSTREAM CG10512	TF binding site mE1_TFBS_cad
2R	9561345	2R_9561345_SNP [dm3] 2R_13673840_SNP [dm6]	A	G	5.026e^-4	0.787	DOWNSTREAM CR45032 INTRON fas	TF binding site mE1_TFBS_chinmo
2L	13540411	2L_13540411_SNP [dm3] 2L_13540411_SNP [dm6]	C	T	5.028e^-4	0.787	UPSTREAM CG16852 INTRON B4
2L	13540414	2L_13540414_SNP [dm3] 2L_13540414_SNP [dm6]	A	G	5.028e^-4	0.787	UPSTREAM CG16852 INTRON B4
3L	8623574	3L_8623574_SNP [dm3] 3L_8630474_SNP [dm6]	T	C	5.046e^-4	0.787	UTR_5_PRIME Zasp66 INTRON Zasp66	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11927683	3L_11927683_SNP [dm3] 3L_11934583_SNP [dm6]	C	T	5.048e^-4	0.787	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9239203	2L_9239203_SNP [dm3] 2L_9239203_SNP [dm6]	C	T	5.054e^-4	0.787	SYNONYMOUS_CODING tai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19979546	2L_19979546_SNP [dm3] 2L_19979546_SNP [dm6]	A	T	5.079e^-4	0.787	INTRON CG43861 EXON CR43620
X	14747722	X_14747722_SNP [dm3] X_14853689_SNP [dm6]	T	C	5.099e^-4	0.787	UPSTREAM CG9521 DOWNSTREAM CG9519 INTRON Flo2
3R	19206622	3R_19206622_SNP [dm3] 3R_23380900_SNP [dm6]	G	A	5.105e^-4	0.787	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo
X	20327473	X_20327473_SNP [dm3] X_20456446_SNP [dm6]	C	T	5.115e^-4	0.787	INTRON CG32506
3L	11906747	3L_11906747_SNP [dm3] 3L_11913647_SNP [dm6]	T	C	5.130e^-4	0.787	INTRON CG44837
3L	11906765	3L_11906765_SNP [dm3] 3L_11913665_SNP [dm6]	G	A	5.130e^-4	0.787	INTRON CG44837
3R	18458281	3R_18458281_SNP [dm3] 3R_22632559_SNP [dm6]	T	C	5.131e^-4	0.787	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7210764	2L_7210764_SNP [dm3] 2L_7210764_SNP [dm6]	C	A	5.136e^-4	0.787	INTRON CG13784
2R	18361384	2R_18361384_SNP [dm3] 2R_22473879_SNP [dm6]	T	G	5.136e^-4	0.787	DOWNSTREAM CG10384 INTRON CG45062	TF binding site mE1_TFBS_cad
2R	18362285	2R_18362285_SNP [dm3] 2R_22474780_SNP [dm6]	A	C	5.136e^-4	0.787	SYNONYMOUS_CODING CG45062	TF binding site mE1_TFBS_chinmo
3R	12313893	3R_12313893_SNP [dm3] 3R_16488171_SNP [dm6]	T	C	5.137e^-4	0.787	SYNONYMOUS_CODING Cad89D
3R	12313896	3R_12313896_SNP [dm3] 3R_16488174_SNP [dm6]	G	A	5.137e^-4	0.787	SYNONYMOUS_CODING Cad89D
2L	7210677	2L_7210677_SNP [dm3] 2L_7210677_SNP [dm6]	A	G	5.143e^-4	0.787	INTRON CG13784
2L	4755653	2L_4755653_SNP [dm3] 2L_4755653_SNP [dm6]	G	A	5.143e^-4	0.787	INTRON CG15630
X	2909118	X_2909118_SNP [dm3] X_3015085_SNP [dm6]	T	G	5.150e^-4	0.787	INTRON kirre
3R	17940312	3R_17940312_SNP [dm3] 3R_22114590_SNP [dm6]	A	C	5.152e^-4	0.787	SYNONYMOUS_CODING Ir94a DOWNSTREAM Ir94b
3R	25021176	3R_25021176_SNP [dm3] 3R_29195454_SNP [dm6]	G	A	5.154e^-4	0.787	UPSTREAM CG14509 INTERGENIC
3R	17975992	3R_17975992_SNP [dm3] 3R_22150270_SNP [dm6]	C	T	5.157e^-4	0.787	INTRON SKIP	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	5250406	3L_5250406_SNP [dm3] 3L_5257306_SNP [dm6]	G	T	5.164e^-4	0.787	INTRON shep
2R	9676671	2R_9676671_SNP [dm3] 2R_13789166_SNP [dm6]	C	G	5.168e^-4	0.787	INTERGENIC
X	3003830	X_3003830_DEL [dm3] X_3109797_DEL [dm6]	GTTTT	C	5.173e^-4	0.787	INTRON kirre
X	14749593	X_14749593_SNP [dm3] X_14855560_SNP [dm6]	A	G	5.174e^-4	0.787	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14749650	X_14749650_SNP [dm3] X_14855617_SNP [dm6]	C	T	5.174e^-4	0.787	SYNONYMOUS_CODING CG9519 INTRON Flo2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14750860	X_14750860_SNP [dm3] X_14856827_SNP [dm6]	A	G	5.174e^-4	0.787	UPSTREAM CG9519 INTRON Flo2
2L	4256026	2L_4256026_SNP [dm3] 2L_4256026_SNP [dm6]	T	C	5.179e^-4	0.787	DOWNSTREAM CR45295 & 1 other EXON CR45294
3L	14270962	3L_14270962_SNP [dm3] 3L_14277862_SNP [dm6]	C	T	5.211e^-4	0.787	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	11792036	3L_11792036_DEL [dm3] 3L_11798936_DEL [dm6]	ACTA	A	5.230e^-4	0.787	DOWNSTREAM CG10361 & 1 other INTERGENIC
2L	18082159	2L_18082159_SNP [dm3] 2L_18082159_SNP [dm6]	G	A	5.230e^-4	0.787	SPLICE_SITE_REGION ninaD DOWNSTREAM Arr1 INTRON ninaD
3R	25021246	3R_25021246_SNP [dm3] 3R_29195524_SNP [dm6]	C	A	5.252e^-4	0.787	UPSTREAM CG14509 INTERGENIC
2L	12002726	2L_12002726_SNP [dm3] 2L_12002726_SNP [dm6]	T	C	5.254e^-4	0.787	UPSTREAM CG6746 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	18046123	2L_18046123_SNP [dm3] 2L_18046123_SNP [dm6]	A	G	5.255e^-4	0.787	INTRON rdo
3R	15224661	3R_15224661_SNP [dm3] 3R_19398939_SNP [dm6]	G	C	5.260e^-4	0.787	UPSTREAM CG31244 INTRON Ino80
2L	12080685	2L_12080685_SNP [dm3] 2L_12080685_SNP [dm6]	A	T	5.267e^-4	0.787	DOWNSTREAM CR44590 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7596552	3L_7596552_SNP [dm3] 3L_7603452_SNP [dm6]	A	G	5.268e^-4	0.787	NON_SYNONYMOUS_CODING CG33275
3R	13488166	3R_13488166_SNP [dm3] 3R_17662444_SNP [dm6]	A	G	5.276e^-4	0.787	NON_SYNONYMOUS_CODING CG14322
2L	14436622	2L_14436622_SNP [dm3] 2L_14436622_SNP [dm6]	T	G	5.281e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	12340011	X_12340011_SNP [dm3] X_12445978_SNP [dm6]	G	A	5.293e^-4	0.787	SYNONYMOUS_CODING Pkcdelta INTRON Pkcdelta
3R	9571297	3R_9571297_SNP [dm3] 3R_13745575_SNP [dm6]	T	A	5.297e^-4	0.787	INTRON CG34383
3R	9571301	3R_9571301_SNP [dm3] 3R_13745579_SNP [dm6]	T	G	5.297e^-4	0.787	INTRON CG34383
X	14743362	X_14743362_SNP [dm3] X_14849329_SNP [dm6]	A	C	5.301e^-4	0.787	UPSTREAM CG9522 INTRON Flo2
2R	6749255	2R_6749255_SNP [dm3] 2R_10861750_SNP [dm6]	A	G	5.301e^-4	0.787	UPSTREAM CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14768864	3R_14768864_SNP [dm3] 3R_18943142_SNP [dm6]	T	A	5.307e^-4	0.787	INTRON CG42613
3L	12686272	3L_12686272_SNP [dm3] 3L_12693172_SNP [dm6]	T	A	5.319e^-4	0.787	UPSTREAM mirr INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8181982	2R_8181982_DEL [dm3] 2R_12294477_DEL [dm6]	CCCAATATTT	C	5.320e^-4	0.787	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11899333	X_11899333_SNP [dm3] X_12005300_SNP [dm6]	C	A	5.321e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22643407	3R_22643407_SNP [dm3] 3R_26817685_SNP [dm6]	T	C	5.333e^-4	0.787	INTRON Tl
2R	6339283	2R_6339283_SNP [dm3] 2R_10451778_SNP [dm6]	G	A	5.342e^-4	0.787	INTRON Galphao & 1 other

By genomic position
Variant impact
Gene name

daughters2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results