DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.095e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	2.8182	0.0932

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1397 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11361515	2L_11361515_SNP [dm3] 2L_11361515_SNP [dm6]	A	G	1.784e^-6	0.468	INTRON salr	regulatory region REDfly_CRMs
3R	11618479	3R_11618479_SNP [dm3] 3R_15792757_SNP [dm6]	G	C	2.038e^-6	0.468	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
3R	24217371	3R_24217371_SNP [dm3] 3R_28391649_SNP [dm6]	C	A	2.706e^-6	0.468	INTERGENIC
2L	11361516	2L_11361516_SNP [dm3] 2L_11361516_SNP [dm6]	T	C	2.753e^-6	0.468	INTRON salr	regulatory region REDfly_CRMs
3R	9151822	3R_9151822_SNP [dm3] 3R_13326100_SNP [dm6]	T	C	2.994e^-6	0.468	INTERGENIC
X	4519489	X_4519489_SNP [dm3] X_4625456_SNP [dm6]	C	T	3.702e^-6	0.468	SYNONYMOUS_CODING peb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	14642055	3L_14642055_SNP [dm3] 3L_14648955_SNP [dm6]	A	T	5.198e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642058	3L_14642058_SNP [dm3] 3L_14648958_SNP [dm6]	G	A	5.198e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642078	3L_14642078_MNP [dm3] 3L_14648978_MNP [dm6]	GGG	AAA	5.198e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	13541893	3L_13541893_INS [dm3] 3L_13548793_INS [dm6]	C	CGGACAC	6.161e^-6	0.468	INTRON bru-3
3R	26119383	3R_26119383_SNP [dm3] 3R_30293661_SNP [dm6]	G	C	6.502e^-6	0.468	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14642070	3L_14642070_SNP [dm3] 3L_14648970_SNP [dm6]	C	T	6.793e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642095	3L_14642095_SNP [dm3] 3L_14648995_SNP [dm6]	T	A	6.793e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642098	3L_14642098_SNP [dm3] 3L_14648998_SNP [dm6]	A	T	6.793e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642110	3L_14642110_SNP [dm3] 3L_14649010_SNP [dm6]	T	C	6.793e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642089	3L_14642089_SNP [dm3] 3L_14648989_SNP [dm6]	A	T	6.962e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6379235	2R_6379235_SNP [dm3] 2R_10491730_SNP [dm6]	C	T	7.089e^-6	0.468	UTR_3_PRIME lola INTRON lola
2R	6508001	2R_6508001_SNP [dm3] 2R_10620496_SNP [dm6]	A	C	7.089e^-6	0.468	INTRON CG11883
3R	25365859	3R_25365859_SNP [dm3] 3R_29540137_SNP [dm6]	T	A	7.171e^-6	0.468	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15343672	2L_15343672_DEL [dm3] 2L_15343672_DEL [dm6]	AAAT	A	7.204e^-6	0.468	INTERGENIC
2L	15343677	2L_15343677_SNP [dm3] 2L_15343677_SNP [dm6]	A	T	7.204e^-6	0.468	INTERGENIC
2L	15343679	2L_15343679_SNP [dm3] 2L_15343679_SNP [dm6]	T	C	7.204e^-6	0.468	INTERGENIC
2L	15343680	2L_15343680_SNP [dm3] 2L_15343680_SNP [dm6]	T	A	7.204e^-6	0.468	INTERGENIC
2L	15343689	2L_15343689_SNP [dm3] 2L_15343689_SNP [dm6]	T	A	7.204e^-6	0.468	INTERGENIC
3L	14642039	3L_14642039_SNP [dm3] 3L_14648939_SNP [dm6]	T	G	7.260e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642051	3L_14642051_SNP [dm3] 3L_14648951_SNP [dm6]	T	C	7.260e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	13588263	3R_13588263_INS [dm3] 3R_17762541_INS [dm6]	G	GTCG	7.375e^-6	0.468	UTR_5_PRIME TyrR UPSTREAM TyrR
2L	9507277	2L_9507277_SNP [dm3] 2L_9507277_SNP [dm6]	G	T	8.098e^-6	0.468	INTRON CG33298
3R	26119375	3R_26119375_SNP [dm3] 3R_30293653_SNP [dm6]	T	A	8.161e^-6	0.468	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14642038	3L_14642038_SNP [dm3] 3L_14648938_SNP [dm6]	T	A	8.581e^-6	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4427850	2L_4427850_SNP [dm3] 2L_4427850_SNP [dm6]	A	G	9.461e^-6	0.468	INTRON CG15431
2R	6508615	2R_6508615_SNP [dm3] 2R_10621110_SNP [dm6]	A	G	9.503e^-6	0.468	INTRON CG11883
3R	11140143	3R_11140143_SNP [dm3] 3R_15314421_SNP [dm6]	T	C	9.503e^-6	0.468	INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12834135	3L_12834135_SNP [dm3] 3L_12841035_SNP [dm6]	G	T	1.022e^-5	0.468	INTRON CG10960	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	14642109	3L_14642109_SNP [dm3] 3L_14649009_SNP [dm6]	A	T	1.067e^-5	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14642171	3L_14642171_SNP [dm3] 3L_14649071_SNP [dm6]	A	T	1.078e^-5	0.468	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	11059590	2R_11059590_SNP [dm3] 2R_15172085_SNP [dm6]	T	C	1.093e^-5	0.468	INTRON igl
2R	6508603	2R_6508603_SNP [dm3] 2R_10621098_SNP [dm6]	T	G	1.093e^-5	0.468	INTRON CG11883
3R	24366641	3R_24366641_SNP [dm3] 3R_28540919_SNP [dm6]	G	A	1.134e^-5	0.468	UPSTREAM Ppn INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15343669	2L_15343669_SNP [dm3] 2L_15343669_SNP [dm6]	A	T	1.179e^-5	0.468	INTERGENIC
2L	15343684	2L_15343684_MNP [dm3] 2L_15343684_MNP [dm6]	GTT	ACA	1.179e^-5	0.468	INTERGENIC
2L	15343691	2L_15343691_DEL [dm3] 2L_15343691_DEL [dm6]	CAC	A	1.179e^-5	0.468	INTERGENIC
3R	24807557	3R_24807557_SNP [dm3] 3R_28981835_SNP [dm6]	C	T	1.186e^-5	0.468	INTERGENIC
2L	17250611	2L_17250611_SNP [dm3] 2L_17250611_SNP [dm6]	C	T	1.209e^-5	0.468	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	7986614	3L_7986614_SNP [dm3] 3L_7993514_SNP [dm6]	C	G	1.217e^-5	0.468	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	9088728	3L_9088728_SNP [dm3] 3L_9095628_SNP [dm6]	C	T	1.224e^-5	0.468	DOWNSTREAM CG32032 INTERGENIC
3R	26119373	3R_26119373_SNP [dm3] 3R_30293651_SNP [dm6]	G	C	1.331e^-5	0.498	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11360994	2L_11360994_SNP [dm3] 2L_11360994_SNP [dm6]	G	C	1.468e^-5	0.52	INTRON salr	regulatory region REDfly_CRMs
3L	14641921	3L_14641921_SNP [dm3] 3L_14648821_SNP [dm6]	A	G	1.492e^-5	0.52	INTRON dlp	TF binding site mE1_TFBS_HSA
3R	11618443	3R_11618443_SNP [dm3] 3R_15792721_SNP [dm6]	A	G	1.540e^-5	0.52	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	16704328	3R_16704328_SNP [dm3] 3R_20878606_SNP [dm6]	T	A	1.542e^-5	0.52	DOWNSTREAM TotZ EXON CR44048
3L	14642063	3L_14642063_SNP [dm3] 3L_14648963_SNP [dm6]	T	G	1.607e^-5	0.52	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	970831	3L_970831_SNP [dm3] 3L_970831_SNP [dm6]	A	G	1.620e^-5	0.52	INTRON Glut1
2L	7101775	2L_7101775_SNP [dm3] 2L_7101775_SNP [dm6]	C	T	1.669e^-5	0.52	INTRON Pvf3
X	18249664	X_18249664_INS [dm3] X_18355631_INS [dm6]	G	GTAGGCGG	1.678e^-5	0.52	INTRON CG6123
2L	15740889	2L_15740889_SNP [dm3] 2L_15740889_SNP [dm6]	T	A	1.679e^-5	0.52	UTR_5_PRIME CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5318902	2R_5318902_INS [dm3] 2R_9431397_INS [dm6]	A	ATACA	1.686e^-5	0.52	INTRON Pdk
X	3911257	X_3911257_SNP [dm3] X_4017224_SNP [dm6]	G	A	1.730e^-5	0.524	INTERGENIC
3L	7986579	3L_7986579_MNP [dm3] 3L_7993479_MNP [dm6]	GTT	TAG	1.973e^-5	0.569	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	3911217	X_3911217_SNP [dm3] X_4017184_SNP [dm6]	C	A	1.974e^-5	0.569	INTERGENIC
X	3911229	X_3911229_SNP [dm3] X_4017196_SNP [dm6]	T	G	1.974e^-5	0.569	INTERGENIC
X	3911242	X_3911242_DEL [dm3] X_4017209_DEL [dm6]	TAATATCAGT	T	2.039e^-5	0.575	INTERGENIC
3R	16739456	3R_16739456_SNP [dm3] 3R_20913734_SNP [dm6]	C	T	2.083e^-5	0.575	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2794934	X_2794934_SNP [dm3] X_2900901_SNP [dm6]	A	C	2.110e^-5	0.575	INTRON kirre
3L	5376612	3L_5376612_DEL [dm3] 3L_5383512_DEL [dm6]	CTGT	A	2.139e^-5	0.575	UPSTREAM Ir64a INTERGENIC
2L	9014159	2L_9014159_SNP [dm3] 2L_9014159_SNP [dm6]	C	T	2.157e^-5	0.575	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	9151836	3R_9151836_SNP [dm3] 3R_13326114_SNP [dm6]	A	G	2.236e^-5	0.587	INTERGENIC
3L	14642130	3L_14642130_INS [dm3] 3L_14649030_INS [dm6]	T	TTGT	2.320e^-5	0.6	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	15737816	3L_15737816_SNP [dm3] 3L_15744716_SNP [dm6]	A	T	2.420e^-5	0.617	INTERGENIC
3R	13588248	3R_13588248_SNP [dm3] 3R_17762526_SNP [dm6]	G	A	2.506e^-5	0.622	UTR_5_PRIME TyrR UPSTREAM TyrR
X	6396781	X_6396781_SNP [dm3] X_6502748_SNP [dm6]	A	T	2.513e^-5	0.622	INTRON CG42340
3L	9088629	3L_9088629_SNP [dm3] 3L_9095529_SNP [dm6]	C	G	2.620e^-5	0.64	DOWNSTREAM CG32032 INTERGENIC
X	3911227	X_3911227_SNP [dm3] X_4017194_SNP [dm6]	A	T	2.667e^-5	0.641	INTERGENIC
3R	25365840	3R_25365840_SNP [dm3] 3R_29540118_SNP [dm6]	T	C	2.699e^-5	0.641	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1605240	3L_1605240_SNP [dm3] 3L_1605240_SNP [dm6]	A	C	2.819e^-5	0.661	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
3R	13626819	3R_13626819_SNP [dm3] 3R_17801097_SNP [dm6]	G	T	2.894e^-5	0.663	DOWNSTREAM CG17806 INTRON CG17803
3L	9088625	3L_9088625_SNP [dm3] 3L_9095525_SNP [dm6]	C	T	2.903e^-5	0.663	DOWNSTREAM CG32032 INTERGENIC
3L	2622009	3L_2622009_SNP [dm3] 3L_2622009_SNP [dm6]	A	T	3.151e^-5	0.71	INTRON Pxn
2R	6452247	2R_6452247_SNP [dm3] 2R_10564742_SNP [dm6]	C	T	3.262e^-5	0.726	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	6887132	2L_6887132_SNP [dm3] 2L_6887132_SNP [dm6]	A	G	3.427e^-5	0.744	INTRON Nlg2
2L	6887142	2L_6887142_SNP [dm3] 2L_6887142_SNP [dm6]	A	C	3.427e^-5	0.744	INTRON Nlg2
3L	8246620	3L_8246620_SNP [dm3] 3L_8253520_SNP [dm6]	A	T	3.470e^-5	0.744	INTRON Dscam4
3L	1629983	3L_1629983_SNP [dm3] 3L_1629983_SNP [dm6]	T	C	3.565e^-5	0.755	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14352150	2L_14352150_SNP [dm3] 2L_14352150_SNP [dm6]	A	C	3.794e^-5	0.792	UTR_5_PRIME CG43052 UPSTREAM l_2_34Fc DOWNSTREAM l_2_34Fd
2L	4427843	2L_4427843_SNP [dm3] 2L_4427843_SNP [dm6]	G	A	4.056e^-5	0.792	INTRON CG15431
3L	19412520	3L_19412520_SNP [dm3] 3L_19419420_SNP [dm6]	G	A	4.062e^-5	0.792	INTERGENIC
3L	7061417	3L_7061417_SNP [dm3] 3L_7068317_SNP [dm6]	G	A	4.200e^-5	0.792	SYNONYMOUS_CODING CG32391 DOWNSTREAM CG14823 INTRON CG8641
3L	1383873	3L_1383873_SNP [dm3] 3L_1383873_SNP [dm6]	A	C	4.235e^-5	0.792	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
3L	16433660	3L_16433660_SNP [dm3] 3L_16440560_SNP [dm6]	A	C	4.401e^-5	0.792	INTRON CG33158 & 1 other
X	6804574	X_6804574_DEL [dm3] X_6910541_DEL [dm6]	TT	T	4.415e^-5	0.792	INTRON CG14431
2L	14359817	2L_14359817_SNP [dm3] 2L_14359817_SNP [dm6]	T	C	4.444e^-5	0.792	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9196104	3R_9196104_SNP [dm3] 3R_13370382_SNP [dm6]	G	A	4.461e^-5	0.792	SYNONYMOUS_CODING Lip3 DOWNSTREAM CheA87a
X	20530232	X_20530232_SNP [dm3] X_20659205_SNP [dm6]	A	G	4.483e^-5	0.792	INTRON Cyp6v1
2L	6887031	2L_6887031_SNP [dm3] 2L_6887031_SNP [dm6]	A	T	4.492e^-5	0.792	INTRON Nlg2	TF binding site BDTNP1_TFBS_twi
2L	6887035	2L_6887035_SNP [dm3] 2L_6887035_SNP [dm6]	C	T	4.492e^-5	0.792	INTRON Nlg2	TF binding site BDTNP1_TFBS_twi
2L	6887070	2L_6887070_SNP [dm3] 2L_6887070_SNP [dm6]	A	G	4.492e^-5	0.792	INTRON Nlg2
3L	14642827	3L_14642827_SNP [dm3] 3L_14649727_SNP [dm6]	G	T	4.521e^-5	0.792	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	12384171	3R_12384171_SNP [dm3] 3R_16558449_SNP [dm6]	C	T	4.539e^-5	0.792	INTRON CG42342
2L	1460951	2L_1460951_SNP [dm3] 2L_1460951_SNP [dm6]	T	A	4.624e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	17335883	3L_17335883_SNP [dm3] 3L_17342783_SNP [dm6]	G	A	4.700e^-5	0.792	INTRON brv2
3R	13690663	3R_13690663_SNP [dm3] 3R_17864941_SNP [dm6]	A	T	4.796e^-5	0.792	NON_SYNONYMOUS_CODING tinc
2R	18741395	2R_18741395_SNP [dm3] 2R_22853872_SNP [dm6]	T	G	4.801e^-5	0.792	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18741492	2R_18741492_SNP [dm3] 2R_22853969_SNP [dm6]	G	A	4.801e^-5	0.792	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9196465	3R_9196465_SNP [dm3] 3R_13370743_SNP [dm6]	C	A	4.984e^-5	0.792	DOWNSTREAM CheA87a INTRON Lip3
3R	9196475	3R_9196475_SNP [dm3] 3R_13370753_SNP [dm6]	T	C	4.984e^-5	0.792	DOWNSTREAM CheA87a INTRON Lip3
X	20530224	X_20530224_SNP [dm3] X_20659197_SNP [dm6]	A	G	5.166e^-5	0.792	INTRON Cyp6v1
3R	12926587	3R_12926587_SNP [dm3] 3R_17100865_SNP [dm6]	T	C	5.195e^-5	0.792	INTRON cher
3R	12926613	3R_12926613_SNP [dm3] 3R_17100891_SNP [dm6]	G	T	5.195e^-5	0.792	INTRON cher
2L	11971745	2L_11971745_SNP [dm3] 2L_11971745_SNP [dm6]	C	T	5.262e^-5	0.792	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11971906	2L_11971906_SNP [dm3] 2L_11971906_SNP [dm6]	A	T	5.262e^-5	0.792	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	2622023	3L_2622023_INS [dm3] 3L_2622023_INS [dm6]	A	AGGTCTCA	5.296e^-5	0.792	INTRON Pxn
2L	19686941	2L_19686941_SNP [dm3] 2L_19686941_SNP [dm6]	G	A	5.297e^-5	0.792	INTRON Lar
2R	11471496	2R_11471496_SNP [dm3] 2R_15583991_SNP [dm6]	T	A	5.339e^-5	0.792	INTERGENIC
3L	10862630	3L_10862630_SNP [dm3] 3L_10869530_SNP [dm6]	A	T	5.356e^-5	0.792	UPSTREAM tna INTRON tna
2R	6470230	2R_6470230_SNP [dm3] 2R_10582725_SNP [dm6]	T	A	5.359e^-5	0.792	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	6470328	2R_6470328_SNP [dm3] 2R_10582823_SNP [dm6]	C	T	5.359e^-5	0.792	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	6470331	2R_6470331_SNP [dm3] 2R_10582826_SNP [dm6]	A	G	5.359e^-5	0.792	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	6470398	2R_6470398_DEL [dm3] 2R_10582893_DEL [dm6]	TT	T	5.359e^-5	0.792	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	6470408	2R_6470408_SNP [dm3] 2R_10582903_SNP [dm6]	T	A	5.359e^-5	0.792	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	16433813	3L_16433813_SNP [dm3] 3L_16440713_SNP [dm6]	G	A	5.420e^-5	0.792	INTRON CG33158 & 1 other
2R	12333487	2R_12333487_SNP [dm3] 2R_16445982_SNP [dm6]	T	A	5.561e^-5	0.792	UPSTREAM CG15925 INTERGENIC
2R	19897034	2R_19897034_SNP [dm3] 2R_24009511_SNP [dm6]	C	T	5.561e^-5	0.792	NON_SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo
3R	17993103	3R_17993103_SNP [dm3] 3R_22167381_SNP [dm6]	G	C	5.744e^-5	0.792	INTRON SKIP	TF binding site mE1_TFBS_Kr
3L	7984136	3L_7984136_SNP [dm3] 3L_7991036_SNP [dm6]	T	C	5.800e^-5	0.792	INTRON nmo	TF binding site mE1_TFBS_cnc
3R	24761012	3R_24761012_SNP [dm3] 3R_28935290_SNP [dm6]	A	G	5.870e^-5	0.792	INTRON CG14521
3R	24220172	3R_24220172_SNP [dm3] 3R_28394450_SNP [dm6]	G	A	5.949e^-5	0.792	INTERGENIC
3R	7303305	3R_7303305_SNP [dm3] 3R_11477583_SNP [dm6]	T	G	5.992e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11139011	X_11139011_SNP [dm3] X_11244978_SNP [dm6]	C	G	6.035e^-5	0.792	INTRON CG44422
2L	8010191	2L_8010191_SNP [dm3] 2L_8010191_SNP [dm6]	G	A	6.259e^-5	0.792	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5115100	X_5115100_SNP [dm3] X_5221067_SNP [dm6]	A	C	6.340e^-5	0.792	INTRON CG15465 & 1 other
2L	2350486	2L_2350486_SNP [dm3] 2L_2350486_SNP [dm6]	T	C	6.360e^-5	0.792	INTRON CG9967 & 1 other
X	14301449	X_14301449_SNP [dm3] X_14407416_SNP [dm6]	T	C	6.623e^-5	0.792	INTRON dpr8
3L	9081937	3L_9081937_SNP [dm3] 3L_9088837_SNP [dm6]	A	C	6.837e^-5	0.792	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	1642861	3L_1642861_SNP [dm3] 3L_1642861_SNP [dm6]	G	A	6.942e^-5	0.792	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11191010	2L_11191010_SNP [dm3] 2L_11191010_SNP [dm6]	G	C	6.968e^-5	0.792	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1236696	2L_1236696_SNP [dm3] 2L_1236696_SNP [dm6]	C	G	6.968e^-5	0.792	INTERGENIC
2L	15431797	2L_15431797_SNP [dm3] 2L_15431797_SNP [dm6]	C	T	6.968e^-5	0.792	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7742647	2L_7742647_SNP [dm3] 2L_7742647_SNP [dm6]	A	G	6.968e^-5	0.792	INTERGENIC
2L	7742855	2L_7742855_SNP [dm3] 2L_7742855_SNP [dm6]	T	C	6.968e^-5	0.792	DOWNSTREAM CG7214 INTERGENIC
2R	13597454	2R_13597454_SNP [dm3] 2R_17709949_SNP [dm6]	A	T	6.968e^-5	0.792	UPSTREAM CG6424 INTRON CG6424
2R	17035200	2R_17035200_SNP [dm3] 2R_21147695_SNP [dm6]	C	T	6.968e^-5	0.792	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
2R	18394879	2R_18394879_SNP [dm3] 2R_22507374_SNP [dm6]	C	T	6.968e^-5	0.792	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4083072	3L_4083072_SNP [dm3] 3L_4083072_SNP [dm6]	A	C	6.968e^-5	0.792	INTRON Gad1
3R	16891835	3R_16891835_SNP [dm3] 3R_21066113_SNP [dm6]	C	T	6.968e^-5	0.792	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	4127208	3R_4127208_SNP [dm3] 3R_8301486_SNP [dm6]	A	G	6.968e^-5	0.792	UTR_5_PRIME mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4127242	3R_4127242_SNP [dm3] 3R_8301520_SNP [dm6]	C	A	6.968e^-5	0.792	SYNONYMOUS_CODING mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4156237	3R_4156237_SNP [dm3] 3R_8330515_SNP [dm6]	A	C	6.968e^-5	0.792	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14302776	X_14302776_SNP [dm3] X_14408743_SNP [dm6]	C	T	6.968e^-5	0.792	INTRON dpr8
2L	12135321	2L_12135321_SNP [dm3] 2L_12135321_SNP [dm6]	T	G	7.003e^-5	0.792	INTERGENIC
3L	2659050	3L_2659050_SNP [dm3] 3L_2659050_SNP [dm6]	T	C	7.220e^-5	0.792	SYNONYMOUS_CODING Fife UTR_3_PRIME Fife UPSTREAM CG33233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo
3L	4739624	3L_4739624_SNP [dm3] 3L_4739624_SNP [dm6]	G	C	7.275e^-5	0.792	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
2L	4427987	2L_4427987_SNP [dm3] 2L_4427987_SNP [dm6]	A	G	7.380e^-5	0.792	INTRON CG15431
2L	4428074	2L_4428074_SNP [dm3] 2L_4428074_SNP [dm6]	A	C	7.380e^-5	0.792	INTRON CG15431
X	3744491	X_3744491_SNP [dm3] X_3850458_SNP [dm6]	G	A	7.404e^-5	0.792	NON_SYNONYMOUS_CODING ec INTRON ec
X	3744492	X_3744492_SNP [dm3] X_3850459_SNP [dm6]	G	A	7.404e^-5	0.792	SYNONYMOUS_CODING ec INTRON ec
2L	14722937	2L_14722937_SNP [dm3] 2L_14722937_SNP [dm6]	G	C	7.477e^-5	0.792	INTERGENIC
3L	16433825	3L_16433825_SNP [dm3] 3L_16440725_SNP [dm6]	A	G	7.591e^-5	0.792	INTRON CG33158 & 1 other
2R	11874867	2R_11874867_SNP [dm3] 2R_15987362_SNP [dm6]	T	G	7.597e^-5	0.792	UPSTREAM CR45021 & 1 other INTRON Strn-Mlck
X	6593783	X_6593783_SNP [dm3] X_6699750_SNP [dm6]	T	A	7.597e^-5	0.792	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6593967	X_6593967_SNP [dm3] X_6699934_SNP [dm6]	G	A	7.597e^-5	0.792	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14642829	3L_14642829_DEL [dm3] 3L_14649729_DEL [dm6]	GA	G	7.610e^-5	0.792	INTRON dlp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	12426591	3R_12426591_SNP [dm3] 3R_16600869_SNP [dm6]	C	A	7.679e^-5	0.792	INTRON CG10345
3R	26974976	3R_26974976_SNP [dm3] 3R_31149254_SNP [dm6]	C	T	7.771e^-5	0.792	INTRON Gycbeta100B
3L	10262594	3L_10262594_SNP [dm3] 3L_10269494_SNP [dm6]	A	C	7.807e^-5	0.792	EXON CR45242	regulatory region REDfly_CRMs
3R	16452801	3R_16452801_SNP [dm3] 3R_20627079_SNP [dm6]	C	G	7.841e^-5	0.792	UTR_3_PRIME H
3L	20070404	3L_20070404_SNP [dm3] 3L_20077304_SNP [dm6]	G	T	7.874e^-5	0.792	INTRON sNPF-R
3R	24477152	3R_24477152_SNP [dm3] 3R_28651430_SNP [dm6]	G	A	7.901e^-5	0.792	UPSTREAM CG31050 INTERGENIC
3R	24477187	3R_24477187_SNP [dm3] 3R_28651465_SNP [dm6]	A	T	7.901e^-5	0.792	UPSTREAM CG31050 INTERGENIC
3R	24477204	3R_24477204_SNP [dm3] 3R_28651482_SNP [dm6]	T	A	7.901e^-5	0.792	INTERGENIC
3R	24477211	3R_24477211_SNP [dm3] 3R_28651489_SNP [dm6]	T	A	7.901e^-5	0.792	INTERGENIC
3R	24477212	3R_24477212_SNP [dm3] 3R_28651490_SNP [dm6]	C	T	7.901e^-5	0.792	INTERGENIC
2L	492331	2L_492331_SNP [dm3] 2L_492331_SNP [dm6]	A	T	7.921e^-5	0.792	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	493550	2L_493550_SNP [dm3] 2L_493550_SNP [dm6]	G	A	7.921e^-5	0.792	INTRON ush
2L	5954899	2L_5954899_SNP [dm3] 2L_5954899_SNP [dm6]	G	A	7.921e^-5	0.792	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
X	17304679	X_17304679_DEL [dm3] X_17410646_DEL [dm6]	CC	C	7.921e^-5	0.792	INTERGENIC
3L	16433911	3L_16433911_SNP [dm3] 3L_16440811_SNP [dm6]	A	T	7.926e^-5	0.792	INTRON CG33158 & 1 other
3L	7835242	3L_7835242_SNP [dm3] 3L_7842142_SNP [dm6]	A	T	7.990e^-5	0.793	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2989975	3L_2989975_SNP [dm3] 3L_2989975_SNP [dm6]	T	G	8.313e^-5	0.812	INTERGENIC
X	9449491	X_9449491_SNP [dm3] X_9555458_SNP [dm6]	G	C	8.313e^-5	0.812	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	10604335	3R_10604335_SNP [dm3] 3R_14778613_SNP [dm6]	G	A	8.315e^-5	0.812	INTRON jvl
X	12940092	X_12940092_SNP [dm3] X_13046059_SNP [dm6]	T	G	8.448e^-5	0.82	INTRON rad
X	14382716	X_14382716_SNP [dm3] X_14488683_SNP [dm6]	T	C	8.487e^-5	0.82	INTERGENIC
X	20534979	X_20534979_INS [dm3] X_20663952_INS [dm6]	G	GGTCG	8.591e^-5	0.823	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9088478	3L_9088478_SNP [dm3] 3L_9095378_SNP [dm6]	G	C	8.611e^-5	0.823	DOWNSTREAM CG32032 INTERGENIC
2R	13517905	2R_13517905_SNP [dm3] 2R_17630400_SNP [dm6]	A	T	8.670e^-5	0.824	INTRON CG10936 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18170401	X_18170401_SNP [dm3] X_18276368_SNP [dm6]	A	G	8.752e^-5	0.824	UPSTREAM upd3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2659386	3L_2659386_SNP [dm3] 3L_2659386_SNP [dm6]	T	G	8.812e^-5	0.824	UPSTREAM CG33233 INTRON Fife	TF binding site mE1_TFBS_chinmo
3L	6600205	3L_6600205_SNP [dm3] 3L_6607105_SNP [dm6]	T	G	8.812e^-5	0.824	INTRON CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12333458	2R_12333458_SNP [dm3] 2R_16445953_SNP [dm6]	G	T	8.901e^-5	0.824	UPSTREAM CG15925 INTERGENIC
3L	2664117	3L_2664117_SNP [dm3] 3L_2664117_SNP [dm6]	G	A	8.936e^-5	0.824	DOWNSTREAM CG33234 INTRON Fife
3R	26838751	3R_26838751_SNP [dm3] 3R_31013029_SNP [dm6]	C	A	8.973e^-5	0.824	INTRON 5-HT7	TF binding site mE1_TFBS_inv
2L	9986084	2L_9986084_SNP [dm3] 2L_9986084_SNP [dm6]	G	A	9.005e^-5	0.824	INTRON bib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	19478211	2R_19478211_SNP [dm3] 2R_23590688_SNP [dm6]	A	C	9.121e^-5	0.824	INTRON apt
3R	24316014	3R_24316014_SNP [dm3] 3R_28490292_SNP [dm6]	T	A	9.122e^-5	0.824	INTRON Dhc98D
2L	1196368	2L_1196368_SNP [dm3] 2L_1196368_SNP [dm6]	C	T	9.184e^-5	0.824	SYNONYMOUS_CODING CG5001
3R	12048597	3R_12048597_SNP [dm3] 3R_16222875_SNP [dm6]	C	G	9.185e^-5	0.824	UPSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13165040	3L_13165040_SNP [dm3] 3L_13171940_SNP [dm6]	C	T	9.266e^-5	0.827	INTERGENIC
3R	26974822	3R_26974822_SNP [dm3] 3R_31149100_SNP [dm6]	A	T	9.412e^-5	0.829	INTRON Gycbeta100B
2L	7743361	2L_7743361_SNP [dm3] 2L_7743361_SNP [dm6]	C	T	9.500e^-5	0.829	DOWNSTREAM CG7214 INTERGENIC
3R	13418027	3R_13418027_SNP [dm3] 3R_17592305_SNP [dm6]	C	T	9.500e^-5	0.829	INTERGENIC
3R	12644778	3R_12644778_SNP [dm3] 3R_16819056_SNP [dm6]	G	A	9.516e^-5	0.829	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	15870867	3L_15870867_SNP [dm3] 3L_15877767_SNP [dm6]	A	G	9.584e^-5	0.829	INTRON pHCl
2L	1068382	2L_1068382_SNP [dm3] 2L_1068382_SNP [dm6]	G	A	9.607e^-5	0.829	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	492383	2L_492383_SNP [dm3] 2L_492383_SNP [dm6]	C	T	9.620e^-5	0.829	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4428392	2L_4428392_SNP [dm3] 2L_4428392_SNP [dm6]	G	T	9.853e^-5	0.833	INTRON CG15431
2L	7742428	2L_7742428_SNP [dm3] 2L_7742428_SNP [dm6]	A	T	9.853e^-5	0.833	UPSTREAM Acp1 INTERGENIC
3R	17559641	3R_17559641_SNP [dm3] 3R_21733919_SNP [dm6]	C	T	9.855e^-5	0.833	INTERGENIC
3R	17559683	3R_17559683_SNP [dm3] 3R_21733961_SNP [dm6]	A	T	9.855e^-5	0.833	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15347661	2L_15347661_SNP [dm3] 2L_15347661_SNP [dm6]	G	C	9.959e^-5	0.838	INTERGENIC
X	4007219	X_4007219_SNP [dm3] X_4113186_SNP [dm6]	A	C	1.015e^-4	0.839	SYNONYMOUS_CODING Nsun2 UPSTREAM dgt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19825441	2L_19825441_SNP [dm3] 2L_19825441_SNP [dm6]	C	T	1.020e^-4	0.839	INTRON sick
3L	16433835	3L_16433835_SNP [dm3] 3L_16440735_SNP [dm6]	G	A	1.046e^-4	0.839	INTRON CG33158 & 1 other
2L	1299018	2L_1299018_SNP [dm3] 2L_1299018_SNP [dm6]	A	T	1.060e^-4	0.839	INTERGENIC
2L	1299028	2L_1299028_SNP [dm3] 2L_1299028_SNP [dm6]	T	C	1.060e^-4	0.839	INTERGENIC
X	14301489	X_14301489_SNP [dm3] X_14407456_SNP [dm6]	T	G	1.064e^-4	0.839	INTRON dpr8
X	14301507	X_14301507_SNP [dm3] X_14407474_SNP [dm6]	G	A	1.064e^-4	0.839	INTRON dpr8
X	20318721	X_20318721_SNP [dm3] X_20447694_SNP [dm6]	A	G	1.065e^-4	0.839	DOWNSTREAM CG42578 INTERGENIC
3R	25015447	3R_25015447_SNP [dm3] 3R_29189725_SNP [dm6]	G	T	1.067e^-4	0.839	INTRON CG14509
2L	19378082	2L_19378082_INS [dm3] 2L_19378082_INS [dm6]	C	CC	1.075e^-4	0.839	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16433661	3L_16433661_SNP [dm3] 3L_16440561_SNP [dm6]	T	A	1.076e^-4	0.839	INTRON CG33158 & 1 other
3L	16433664	3L_16433664_SNP [dm3] 3L_16440564_SNP [dm6]	T	G	1.076e^-4	0.839	INTRON CG33158 & 1 other
3L	16433665	3L_16433665_SNP [dm3] 3L_16440565_SNP [dm6]	A	G	1.076e^-4	0.839	INTRON CG33158 & 1 other
3L	16433667	3L_16433667_DEL [dm3] 3L_16440567_DEL [dm6]	GTCATCATC	G	1.076e^-4	0.839	INTRON CG33158 & 1 other
X	17955756	X_17955756_DEL [dm3] X_18061723_DEL [dm6]	CCCGC	C	1.077e^-4	0.839	INTRON Sh
2L	19824797	2L_19824797_SNP [dm3] 2L_19824797_SNP [dm6]	C	T	1.077e^-4	0.839	INTRON sick
3R	24613276	3R_24613276_SNP [dm3] 3R_28787554_SNP [dm6]	T	C	1.080e^-4	0.839	INTERGENIC
2R	11545602	2R_11545602_SNP [dm3] 2R_15658097_SNP [dm6]	C	G	1.087e^-4	0.839	NON_SYNONYMOUS_CODING fus DOWNSTREAM mir-278 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9151848	3R_9151848_SNP [dm3] 3R_13326126_SNP [dm6]	A	G	1.088e^-4	0.839	INTERGENIC
2L	5249270	2L_5249270_SNP [dm3] 2L_5249270_SNP [dm6]	T	A	1.099e^-4	0.839	INTRON tkv	TF binding site mE1_TFBS_cnc
3L	9088633	3L_9088633_SNP [dm3] 3L_9095533_SNP [dm6]	A	T	1.102e^-4	0.839	DOWNSTREAM CG32032 INTERGENIC
2R	20188889	2R_20188889_SNP [dm3] 2R_24301366_SNP [dm6]	T	G	1.106e^-4	0.839	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20316145	X_20316145_SNP [dm3] X_20445118_SNP [dm6]	G	T	1.108e^-4	0.839	UTR_3_PRIME CG1695	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16433688	3L_16433688_SNP [dm3] 3L_16440588_SNP [dm6]	A	G	1.120e^-4	0.843	INTRON CG33158 & 1 other
2L	5456162	2L_5456162_SNP [dm3] 2L_5456162_SNP [dm6]	C	T	1.123e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12447031	2L_12447031_SNP [dm3] 2L_12447031_SNP [dm6]	C	T	1.142e^-4	0.852	SYNONYMOUS_CODING CG5421
2L	19825452	2L_19825452_SNP [dm3] 2L_19825452_SNP [dm6]	T	C	1.149e^-4	0.852	INTRON sick
2L	19825453	2L_19825453_SNP [dm3] 2L_19825453_SNP [dm6]	G	A	1.149e^-4	0.852	INTRON sick
3L	17693124	3L_17693124_SNP [dm3] 3L_17700024_SNP [dm6]	G	T	1.153e^-4	0.852	INTRON Ccn
3R	12061896	3R_12061896_SNP [dm3] 3R_16236174_SNP [dm6]	G	T	1.160e^-4	0.853	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24314572	3R_24314572_SNP [dm3] 3R_28488850_SNP [dm6]	T	C	1.180e^-4	0.853	INTRON Dhc98D
X	20529187	X_20529187_SNP [dm3] X_20658160_SNP [dm6]	T	C	1.182e^-4	0.853	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
3R	18714619	3R_18714619_DEL [dm3] 3R_22888897_DEL [dm6]	TT	T	1.184e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12456846	2R_12456846_SNP [dm3] 2R_16569341_SNP [dm6]	G	A	1.184e^-4	0.853	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2663896	3L_2663896_SNP [dm3] 3L_2663896_SNP [dm6]	T	C	1.185e^-4	0.853	DOWNSTREAM CG33234 INTRON Fife
X	9790622	X_9790622_SNP [dm3] X_9896589_SNP [dm6]	G	A	1.192e^-4	0.853	INTRON CG15249
3L	7902301	3L_7902301_SNP [dm3] 3L_7909201_SNP [dm6]	A	G	1.199e^-4	0.853	SYNONYMOUS_CODING pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9088648	3L_9088648_DEL [dm3] 3L_9095548_DEL [dm6]	AAGA	A	1.202e^-4	0.853	DOWNSTREAM CG32032 INTERGENIC
3L	7834801	3L_7834801_SNP [dm3] 3L_7841701_SNP [dm6]	G	A	1.203e^-4	0.853	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	1642730	3L_1642730_SNP [dm3] 3L_1642730_SNP [dm6]	A	G	1.209e^-4	0.854	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14982063	2R_14982063_SNP [dm3] 2R_19094558_SNP [dm6]	G	A	1.241e^-4	0.865	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
3R	26664274	3R_26664274_SNP [dm3] 3R_30838552_SNP [dm6]	G	A	1.243e^-4	0.865	SYNONYMOUS_CODING CG15544
2R	13993156	2R_13993156_SNP [dm3] 2R_18105651_SNP [dm6]	T	G	1.250e^-4	0.865	INTRON CG5756
3R	9760102	3R_9760102_SNP [dm3] 3R_13934380_SNP [dm6]	C	G	1.251e^-4	0.865	INTERGENIC
2L	8229817	2L_8229817_SNP [dm3] 2L_8229817_SNP [dm6]	G	A	1.260e^-4	0.865	INTRON Pvr
2L	8229819	2L_8229819_SNP [dm3] 2L_8229819_SNP [dm6]	A	C	1.260e^-4	0.865	INTRON Pvr
3L	14642099	3L_14642099_SNP [dm3] 3L_14648999_SNP [dm6]	T	C	1.273e^-4	0.865	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	18565196	X_18565196_SNP [dm3] X_18671163_SNP [dm6]	G	T	1.281e^-4	0.865	INTERGENIC
X	2414040	X_2414040_SNP [dm3] X_2520007_SNP [dm6]	C	T	1.282e^-4	0.865	INTRON trol
3R	26021142	3R_26021142_SNP [dm3] 3R_30195420_SNP [dm6]	A	G	1.283e^-4	0.865	DOWNSTREAM CG9743 INTRON CG15531
2L	4902338	2L_4902338_SNP [dm3] 2L_4902338_SNP [dm6]	T	C	1.286e^-4	0.865	SYNONYMOUS_CODING CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9796970	2R_9796970_SNP [dm3] 2R_13909465_SNP [dm6]	A	C	1.295e^-4	0.865	INTRON shot
3L	14228494	3L_14228494_SNP [dm3] 3L_14235394_SNP [dm6]	T	C	1.296e^-4	0.865	SYNONYMOUS_CODING CG34244 DOWNSTREAM CG7924	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2627277	3L_2627277_SNP [dm3] 3L_2627277_SNP [dm6]	A	G	1.297e^-4	0.865	INTRON Pxn
3R	22144237	3R_22144237_SNP [dm3] 3R_26318515_SNP [dm6]	T	A	1.304e^-4	0.865	UTR_5_PRIME CG33970
3L	15870162	3L_15870162_SNP [dm3] 3L_15877062_SNP [dm6]	T	G	1.305e^-4	0.865	UPSTREAM CR44051 INTRON pHCl
3R	25834938	3R_25834938_SNP [dm3] 3R_30009216_SNP [dm6]	G	A	1.310e^-4	0.865	UPSTREAM CG7912 INTRON Nlp
3L	16880262	3L_16880262_SNP [dm3] 3L_16887162_SNP [dm6]	A	G	1.319e^-4	0.866	UTR_5_PRIME Lmpt INTRON Lmpt
3R	16739498	3R_16739498_SNP [dm3] 3R_20913776_SNP [dm6]	T	C	1.334e^-4	0.866	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	919658	X_919658_SNP [dm3] X_1025625_SNP [dm6]	A	G	1.338e^-4	0.866	INTRON su_w[a]_ & 2 others
X	919681	X_919681_SNP [dm3] X_1025648_SNP [dm6]	G	C	1.338e^-4	0.866	INTRON su_w[a]_ & 2 others
3R	25344655	3R_25344655_SNP [dm3] 3R_29518933_SNP [dm6]	C	A	1.341e^-4	0.866	INTERGENIC
3L	12842065	3L_12842065_SNP [dm3] 3L_12848965_SNP [dm6]	A	C	1.341e^-4	0.866	SYNONYMOUS_CODING CG10948	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	5779924	3R_5779924_SNP [dm3] 3R_9954202_SNP [dm6]	G	T	1.346e^-4	0.866	UTR_3_PRIME Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3R	12644817	3R_12644817_SNP [dm3] 3R_16819095_SNP [dm6]	G	C	1.360e^-4	0.872	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17542237	2L_17542237_SNP [dm3] 2L_17542237_SNP [dm6]	C	A	1.378e^-4	0.88	EXON CR43304
2L	5372509	2L_5372509_SNP [dm3] 2L_5372509_SNP [dm6]	T	C	1.388e^-4	0.884	INTERGENIC
X	20528986	X_20528986_SNP [dm3] X_20657959_SNP [dm6]	G	C	1.396e^-4	0.886	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
2R	12456810	2R_12456810_SNP [dm3] 2R_16569305_SNP [dm6]	A	G	1.408e^-4	0.89	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17993102	3R_17993102_SNP [dm3] 3R_22167380_SNP [dm6]	T	C	1.426e^-4	0.895	INTRON SKIP	TF binding site mE1_TFBS_Kr
3L	13541900	3L_13541900_INS [dm3] 3L_13548800_INS [dm6]	A	ATA	1.440e^-4	0.895	INTRON bru-3
X	20318455	X_20318455_INS [dm3] X_20447428_INS [dm6]	C	CGGTGCAACGGGCATGGTC...	1.442e^-4	0.895	DOWNSTREAM CG42578 INTERGENIC
X	20318466	X_20318466_SNP [dm3] X_20447439_SNP [dm6]	A	G	1.442e^-4	0.895	DOWNSTREAM CG42578 INTERGENIC
X	20318467	X_20318467_SNP [dm3] X_20447440_SNP [dm6]	G	T	1.442e^-4	0.895	DOWNSTREAM CG42578 INTERGENIC
2L	19797987	2L_19797987_SNP [dm3] 2L_19797987_SNP [dm6]	A	C	1.446e^-4	0.895	INTRON sick
2L	1051015	2L_1051015_SNP [dm3] 2L_1051015_SNP [dm6]	T	A	1.463e^-4	0.902	UTR_3_PRIME S DOWNSTREAM S
2L	4429815	2L_4429815_SNP [dm3] 2L_4429815_SNP [dm6]	C	T	1.491e^-4	0.912	INTRON CG15431
3R	15456508	3R_15456508_SNP [dm3] 3R_19630786_SNP [dm6]	T	C	1.497e^-4	0.912	INTRON CG6231
3R	7303269	3R_7303269_SNP [dm3] 3R_11477547_SNP [dm6]	C	A	1.505e^-4	0.912	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25417408	3R_25417408_SNP [dm3] 3R_29591686_SNP [dm6]	G	A	1.507e^-4	0.912	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	25417428	3R_25417428_SNP [dm3] 3R_29591706_SNP [dm6]	C	T	1.507e^-4	0.912	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	13386183	3R_13386183_SNP [dm3] 3R_17560461_SNP [dm6]	C	A	1.510e^-4	0.912	INTRON Hmx	TF binding site BDTNP1_TFBS_dl
3R	9196004	3R_9196004_SNP [dm3] 3R_13370282_SNP [dm6]	C	A	1.527e^-4	0.915	UTR_3_PRIME Lip3 & 1 other
3R	5963561	3R_5963561_SNP [dm3] 3R_10137839_SNP [dm6]	T	C	1.531e^-4	0.915	INTRON tws	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	27206827	3R_27206827_SNP [dm3] 3R_31381105_SNP [dm6]	T	A	1.535e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8782901	2R_8782901_SNP [dm3] 2R_12895396_SNP [dm6]	A	G	1.537e^-4	0.915	INTRON vg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12446867	2L_12446867_SNP [dm3] 2L_12446867_SNP [dm6]	T	A	1.545e^-4	0.915	NON_SYNONYMOUS_CODING CG5421 UPSTREAM Oatp33Ea
X	20527032	X_20527032_SNP [dm3] X_20656005_SNP [dm6]	T	G	1.548e^-4	0.915	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4316624	2L_4316624_SNP [dm3] 2L_4316624_SNP [dm6]	G	A	1.554e^-4	0.915	DOWNSTREAM tutl INTRON tutl
3R	24327835	3R_24327835_SNP [dm3] 3R_28502113_SNP [dm6]	C	T	1.556e^-4	0.915	INTRON Dhc98D
3R	24816235	3R_24816235_SNP [dm3] 3R_28990513_SNP [dm6]	T	C	1.562e^-4	0.915	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	4429814	2L_4429814_SNP [dm3] 2L_4429814_SNP [dm6]	A	C	1.577e^-4	0.919	INTRON CG15431
X	20529036	X_20529036_SNP [dm3] X_20658009_SNP [dm6]	G	T	1.580e^-4	0.919	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
3R	14430722	3R_14430722_SNP [dm3] 3R_18605000_SNP [dm6]	C	T	1.603e^-4	0.924	INTRON qin & 1 other
3R	26664328	3R_26664328_SNP [dm3] 3R_30838606_SNP [dm6]	A	C	1.606e^-4	0.924	SYNONYMOUS_CODING CG15544
3L	9020214	3L_9020214_SNP [dm3] 3L_9027114_SNP [dm6]	A	G	1.615e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9760120	3R_9760120_SNP [dm3] 3R_13934398_SNP [dm6]	A	C	1.619e^-4	0.924	INTERGENIC
3L	17004247	3L_17004247_SNP [dm3] 3L_17011147_SNP [dm6]	A	C	1.619e^-4	0.924	INTRON CG3764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9405070	2L_9405070_INS [dm3] 2L_9405070_INS [dm6]	A	ACATACA	1.620e^-4	0.924	INTRON Shawl
2L	13434509	2L_13434509_SNP [dm3] 2L_13434509_SNP [dm6]	C	T	1.637e^-4	0.928	INTRON CG42784	TF binding site mE1_TFBS_cad
X	917513	X_917513_SNP [dm3] X_1023480_SNP [dm6]	C	T	1.653e^-4	0.928	INTRON su_w[a]_ & 2 others
X	920143	X_920143_SNP [dm3] X_1026110_SNP [dm6]	T	C	1.653e^-4	0.928	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	16433763	3L_16433763_SNP [dm3] 3L_16440663_SNP [dm6]	G	A	1.655e^-4	0.928	INTRON CG33158 & 1 other
2L	6536230	2L_6536230_SNP [dm3] 2L_6536230_SNP [dm6]	T	A	1.659e^-4	0.928	UPSTREAM eya INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3043783	3L_3043783_SNP [dm3] 3L_3043783_SNP [dm6]	C	T	1.663e^-4	0.928	SYNONYMOUS_CODING Jafrac2 DOWNSTREAM scramb2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9867295	3R_9867295_SNP [dm3] 3R_14041573_SNP [dm6]	T	C	1.675e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6314338	2R_6314338_SNP [dm3] 2R_10426833_SNP [dm6]	G	T	1.679e^-4	0.928	DOWNSTREAM CG12896 INTERGENIC
2R	2463585	2R_2463585_SNP [dm3] 2R_6576080_SNP [dm6]	C	A	1.685e^-4	0.928	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3680728	2L_3680728_SNP [dm3] 2L_3680728_SNP [dm6]	T	C	1.688e^-4	0.928	INTRON CG34340
3R	13666771	3R_13666771_SNP [dm3] 3R_17841049_SNP [dm6]	A	G	1.698e^-4	0.928	INTRON tinc
2L	7631946	2L_7631946_SNP [dm3] 2L_7631946_SNP [dm6]	T	A	1.703e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	19388879	3L_19388879_SNP [dm3] 3L_19395779_SNP [dm6]	G	C	1.707e^-4	0.928	INTRON CG32206
X	6804573	X_6804573_SNP [dm3] X_6910540_SNP [dm6]	T	G	1.708e^-4	0.928	INTRON CG14431
2L	9507221	2L_9507221_SNP [dm3] 2L_9507221_SNP [dm6]	G	C	1.709e^-4	0.928	INTRON CG33298
3R	24816190	3R_24816190_SNP [dm3] 3R_28990468_SNP [dm6]	G	C	1.721e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3188454	3L_3188454_SNP [dm3] 3L_3188454_SNP [dm6]	A	G	1.721e^-4	0.928	SYNONYMOUS_CODING CG42525 DOWNSTREAM CG14957	TF binding site mE1_TFBS_sens
2R	14982051	2R_14982051_SNP [dm3] 2R_19094546_SNP [dm6]	C	A	1.729e^-4	0.928	SYNONYMOUS_CODING Ir56a INTRON 5-HT1A
3L	9020201	3L_9020201_SNP [dm3] 3L_9027101_SNP [dm6]	C	G	1.732e^-4	0.928	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6656084	2R_6656084_SNP [dm3] 2R_10768579_SNP [dm6]	C	T	1.733e^-4	0.928	INTRON CG33144
3L	19388797	3L_19388797_SNP [dm3] 3L_19395697_SNP [dm6]	A	G	1.742e^-4	0.929	INTRON CG32206
2L	1298960	2L_1298960_SNP [dm3] 2L_1298960_SNP [dm6]	A	T	1.743e^-4	0.929	INTERGENIC
3R	9385445	3R_9385445_SNP [dm3] 3R_13559723_SNP [dm6]	T	A	1.758e^-4	0.931	INTERGENIC
3R	9385447	3R_9385447_SNP [dm3] 3R_13559725_SNP [dm6]	C	T	1.758e^-4	0.931	INTERGENIC
3R	11619418	3R_11619418_SNP [dm3] 3R_15793696_SNP [dm6]	C	T	1.779e^-4	0.939	UPSTREAM nsl1 DOWNSTREAM Acyp2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	23840896	3R_23840896_SNP [dm3] 3R_28015174_SNP [dm6]	G	T	1.793e^-4	0.944	INTERGENIC
3R	9760109	3R_9760109_SNP [dm3] 3R_13934387_SNP [dm6]	C	T	1.812e^-4	0.951	INTERGENIC
3L	13541885	3L_13541885_SNP [dm3] 3L_13548785_SNP [dm6]	A	G	1.826e^-4	0.955	INTRON bru-3
3L	10718741	3L_10718741_DEL [dm3] 3L_10725641_DEL [dm6]	TT	T	1.841e^-4	0.955	INTERGENIC
2R	15928199	2R_15928199_SNP [dm3] 2R_20040694_SNP [dm6]	T	C	1.850e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	16738855	3R_16738855_SNP [dm3] 3R_20913133_SNP [dm6]	G	T	1.862e^-4	0.955	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med
X	920276	X_920276_DEL [dm3] X_1026243_DEL [dm6]	GCGCACGGTGT...	G	1.880e^-4	0.955	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	7908820	3L_7908820_SNP [dm3] 3L_7915720_SNP [dm6]	A	G	1.883e^-4	0.955	SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9932302	2R_9932302_SNP [dm3] 2R_14044797_SNP [dm6]	A	G	1.885e^-4	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3899950	X_3899950_SNP [dm3] X_4005917_SNP [dm6]	A	G	1.888e^-4	0.955	INTERGENIC
X	9296399	X_9296399_SNP [dm3] X_9402366_SNP [dm6]	T	C	1.889e^-4	0.955	INTRON mgl
3R	9328443	3R_9328443_DEL [dm3] 3R_13502721_DEL [dm6]	AA	A	1.890e^-4	0.955	INTERGENIC
X	917385	X_917385_SNP [dm3] X_1023352_SNP [dm6]	C	T	1.893e^-4	0.955	INTRON su_w[a]_ & 2 others
X	9449524	X_9449524_SNP [dm3] X_9555491_SNP [dm6]	T	C	1.896e^-4	0.955	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	14452682	2R_14452682_SNP [dm3] 2R_18565177_SNP [dm6]	C	G	1.899e^-4	0.955	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12644673	3R_12644673_DEL [dm3] 3R_16818951_DEL [dm6]	TCT	T	1.900e^-4	0.955	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12685183	X_12685183_SNP [dm3] X_12791150_SNP [dm6]	A	T	1.902e^-4	0.955	UTR_3_PRIME Pde9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12345223	2R_12345223_INS [dm3] 2R_16457718_INS [dm6]	G	GG	1.912e^-4	0.957	INTERGENIC
X	3814116	X_3814116_SNP [dm3] X_3920083_SNP [dm6]	T	C	1.943e^-4	0.97	INTRON CG42541
3R	26974825	3R_26974825_SNP [dm3] 3R_31149103_SNP [dm6]	C	T	1.961e^-4	0.976	INTRON Gycbeta100B
3R	27081920	3R_27081920_SNP [dm3] 3R_31256198_SNP [dm6]	A	C	1.967e^-4	0.976	SYNONYMOUS_CODING spn-F	TF binding site mE1_TFBS_cad
3R	4719116	3R_4719116_SNP [dm3] 3R_8893394_SNP [dm6]	C	A	1.971e^-4	0.976	INTRON pyd
2R	6470393	2R_6470393_SNP [dm3] 2R_10582888_SNP [dm6]	A	T	2.005e^-4	0.986	UPSTREAM psq INTRON psq	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	17925410	3L_17925410_SNP [dm3] 3L_17932310_SNP [dm6]	C	T	2.006e^-4	0.986	INTERGENIC
3L	9195662	3L_9195662_SNP [dm3] 3L_9202562_SNP [dm6]	C	G	2.023e^-4	0.986	DOWNSTREAM Slc45-1 INTERGENIC
3R	26664675	3R_26664675_SNP [dm3] 3R_30838953_SNP [dm6]	G	A	2.023e^-4	0.986	NON_SYNONYMOUS_CODING CG15544
2R	17028570	2R_17028570_SNP [dm3] 2R_21141065_SNP [dm6]	T	G	2.034e^-4	0.986	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	7904156	3L_7904156_SNP [dm3] 3L_7911056_SNP [dm6]	G	T	2.049e^-4	0.986	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18119927	3L_18119927_SNP [dm3] 3L_18126827_SNP [dm6]	T	C	2.057e^-4	0.986	INTERGENIC
2L	14555374	2L_14555374_SNP [dm3] 2L_14555374_SNP [dm6]	G	A	2.064e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	14555424	2L_14555424_SNP [dm3] 2L_14555424_SNP [dm6]	G	C	2.064e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	8270799	3L_8270799_SNP [dm3] 3L_8277699_SNP [dm6]	G	C	2.070e^-4	0.986	INTRON Dscam4
2L	9416398	2L_9416398_SNP [dm3] 2L_9416398_SNP [dm6]	G	T	2.072e^-4	0.986	UPSTREAM Mco1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14452748	2R_14452748_SNP [dm3] 2R_18565243_SNP [dm6]	C	T	2.086e^-4	0.986	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6073685	2L_6073685_DEL [dm3] 2L_6073685_DEL [dm6]	TT	T	2.108e^-4	0.986	UTR_3_PRIME Kr-h2 DOWNSTREAM CR43801
3R	2022598	3R_2022598_SNP [dm3] 3R_6196876_SNP [dm6]	A	T	2.110e^-4	0.986	INTERGENIC
3R	12926542	3R_12926542_SNP [dm3] 3R_17100820_SNP [dm6]	C	A	2.116e^-4	0.986	INTRON cher
X	20534992	X_20534992_SNP [dm3] X_20663965_SNP [dm6]	G	T	2.120e^-4	0.986	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	11707989	2R_11707989_SNP [dm3] 2R_15820484_SNP [dm6]	T	A	2.128e^-4	0.986	INTRON tun & 1 other
X	7804462	X_7804462_INS [dm3] X_7910429_INS [dm6]	C	CTC	2.142e^-4	0.986	INTRON CG1444
3R	27014934	3R_27014934_SNP [dm3] 3R_31189212_SNP [dm6]	G	A	2.156e^-4	0.986	INTRON mesh
X	6320110	X_6320110_SNP [dm3] X_6426077_SNP [dm6]	T	A	2.163e^-4	0.986	INTRON CG42340
3R	24610942	3R_24610942_SNP [dm3] 3R_28785220_SNP [dm6]	T	C	2.163e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8609721	3L_8609721_SNP [dm3] 3L_8616621_SNP [dm6]	G	C	2.172e^-4	0.986	UTR_3_PRIME CG6282 UPSTREAM S-Lap1
3L	3120867	3L_3120867_SNP [dm3] 3L_3120867_SNP [dm6]	G	A	2.176e^-4	0.986	SYNONYMOUS_CODING prominin-like
3L	13541922	3L_13541922_SNP [dm3] 3L_13548822_SNP [dm6]	A	T	2.176e^-4	0.986	INTRON bru-3
X	13981234	X_13981234_SNP [dm3] X_14087201_SNP [dm6]	T	C	2.208e^-4	0.986	INTERGENIC
2L	2654792	2L_2654792_SNP [dm3] 2L_2654792_SNP [dm6]	A	C	2.223e^-4	0.986	NON_SYNONYMOUS_CODING Or23a UPSTREAM Prosbeta4R2 DOWNSTREAM Prosbeta4R1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4341073	3L_4341073_SNP [dm3] 3L_4341073_SNP [dm6]	A	G	2.240e^-4	0.986	INTRON Cip4
X	920739	X_920739_SNP [dm3] X_1026706_SNP [dm6]	C	G	2.256e^-4	0.986	UPSTREAM CG3021 & 2 others INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	920885	X_920885_SNP [dm3] X_1026852_SNP [dm6]	A	T	2.256e^-4	0.986	UTR_5_PRIME CG3021 UPSTREAM CG32814 & 1 other INTRON su_w[a]_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	19017298	3L_19017298_SNP [dm3] 3L_19024198_SNP [dm6]	G	A	2.268e^-4	0.986	INTRON nkd
2R	6525332	2R_6525332_SNP [dm3] 2R_10637827_SNP [dm6]	C	A	2.282e^-4	0.986	INTRON CG11883	TF binding site mE1_TFBS_cad
2R	6525343	2R_6525343_SNP [dm3] 2R_10637838_SNP [dm6]	A	T	2.282e^-4	0.986	INTRON CG11883	TF binding site mE1_TFBS_cad
3R	927064	3R_927064_SNP [dm3] 3R_5101342_SNP [dm6]	G	T	2.300e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20241397	2L_20241397_SNP [dm3] 2L_20241397_SNP [dm6]	T	A	2.310e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14368022	2L_14368022_SNP [dm3] 2L_14368022_SNP [dm6]	G	A	2.313e^-4	0.986	INTERGENIC
2L	14368117	2L_14368117_SNP [dm3] 2L_14368117_SNP [dm6]	A	T	2.313e^-4	0.986	INTERGENIC
3R	16738656	3R_16738656_INS [dm3] 3R_20912934_INS [dm6]	T	TCT	2.324e^-4	0.986	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24289988	3R_24289988_SNP [dm3] 3R_28464266_SNP [dm6]	C	T	2.328e^-4	0.986	INTRON beat-VI
3L	9196165	3L_9196165_SNP [dm3] 3L_9203065_SNP [dm6]	A	G	2.339e^-4	0.986	UTR_3_PRIME Slc45-1
2R	19800121	2R_19800121_SNP [dm3] 2R_23912598_SNP [dm6]	G	A	2.354e^-4	0.986	SYNONYMOUS_CODING kcc	TF binding site BDTNP1_TFBS_twi
X	6619612	X_6619612_SNP [dm3] X_6725579_SNP [dm6]	C	G	2.355e^-4	0.986	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	26119437	3R_26119437_SNP [dm3] 3R_30293715_SNP [dm6]	A	G	2.358e^-4	0.986	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26119443	3R_26119443_SNP [dm3] 3R_30293721_SNP [dm6]	A	G	2.358e^-4	0.986	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10262364	3L_10262364_SNP [dm3] 3L_10269264_SNP [dm6]	A	C	2.375e^-4	0.986	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
3L	8757263	3L_8757263_SNP [dm3] 3L_8764163_SNP [dm6]	G	A	2.375e^-4	0.986	INTRON Fhos
3R	16704589	3R_16704589_SNP [dm3] 3R_20878867_SNP [dm6]	C	T	2.391e^-4	0.986	DOWNSTREAM TotZ EXON CR44048
X	5694650	X_5694650_SNP [dm3] X_5800617_SNP [dm6]	T	C	2.410e^-4	0.986	INTERGENIC
2L	4430404	2L_4430404_SNP [dm3] 2L_4430404_SNP [dm6]	G	A	2.431e^-4	0.986	INTRON CG15431
X	17667553	X_17667553_SNP [dm3] X_17773520_SNP [dm6]	A	G	2.431e^-4	0.986	INTRON unc-4
X	10194370	X_10194370_SNP [dm3] X_10300337_SNP [dm6]	A	G	2.448e^-4	0.986	INTRON alpha-Man-I
3R	24128438	3R_24128438_SNP [dm3] 3R_28302716_SNP [dm6]	C	G	2.448e^-4	0.986	DOWNSTREAM CG12516 INTERGENIC
3R	24128442	3R_24128442_SNP [dm3] 3R_28302720_SNP [dm6]	C	T	2.448e^-4	0.986	DOWNSTREAM CG12516 INTERGENIC
2L	10688546	2L_10688546_SNP [dm3] 2L_10688546_SNP [dm6]	T	A	2.450e^-4	0.986	DOWNSTREAM CG7294 INTERGENIC
3R	16738847	3R_16738847_SNP [dm3] 3R_20913125_SNP [dm6]	G	T	2.451e^-4	0.986	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med
2L	10902417	2L_10902417_SNP [dm3] 2L_10902417_SNP [dm6]	T	G	2.464e^-4	0.986	UPSTREAM CG14070 INTERGENIC
2L	10902439	2L_10902439_DEL [dm3] 2L_10902439_DEL [dm6]	AC	T	2.464e^-4	0.986	UPSTREAM CG14070 INTERGENIC
X	16082234	X_16082234_SNP [dm3] X_16188201_SNP [dm6]	T	C	2.467e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	20270266	2L_20270266_SNP [dm3] 2L_20270266_SNP [dm6]	A	T	2.468e^-4	0.986	INTERGENIC
X	16701369	X_16701369_SNP [dm3] X_16807336_SNP [dm6]	T	C	2.478e^-4	0.986	INTRON ppk28 EXON CR44053
X	16701386	X_16701386_SNP [dm3] X_16807353_SNP [dm6]	C	T	2.478e^-4	0.986	INTRON ppk28 EXON CR44053
3R	26564587	3R_26564587_SNP [dm3] 3R_30738865_SNP [dm6]	A	C	2.513e^-4	0.986	INTERGENIC
3R	4587621	3R_4587621_INS [dm3] 3R_8761899_INS [dm6]	A	AT	2.523e^-4	0.986	INTRON CG11768 & 1 other
3R	10312367	3R_10312367_SNP [dm3] 3R_14486645_SNP [dm6]	T	C	2.530e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18178125	3R_18178125_SNP [dm3] 3R_22352403_SNP [dm6]	C	T	2.531e^-4	0.986	NON_SYNONYMOUS_CODING rdhB
3R	18357577	3R_18357577_SNP [dm3] 3R_22531855_SNP [dm6]	A	G	2.546e^-4	0.986	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
2R	12572945	2R_12572945_SNP [dm3] 2R_16685440_SNP [dm6]	A	T	2.559e^-4	0.986	INTRON CG30463	TF binding site mE1_TFBS_HSA
2R	12545658	2R_12545658_SNP [dm3] 2R_16658153_SNP [dm6]	A	G	2.564e^-4	0.986	INTRON Picot
X	10229519	X_10229519_INS [dm3] X_10335486_INS [dm6]	A	AG	2.569e^-4	0.986	INTRON CG43740
3R	13626283	3R_13626283_SNP [dm3] 3R_17800561_SNP [dm6]	A	T	2.574e^-4	0.986	DOWNSTREAM CG17806 INTRON CG17803
3L	7221219	3L_7221219_SNP [dm3] 3L_7228119_SNP [dm6]	G	C	2.583e^-4	0.986	INTERGENIC
2R	8093885	2R_8093885_SNP [dm3] 2R_12206380_SNP [dm6]	T	G	2.588e^-4	0.986	EXON CR45276	TF binding site mE1_TFBS_cad
3R	26974876	3R_26974876_SNP [dm3] 3R_31149154_SNP [dm6]	A	T	2.593e^-4	0.986	INTRON Gycbeta100B
2L	14753114	2L_14753114_SNP [dm3] 2L_14753114_SNP [dm6]	T	A	2.609e^-4	0.986	INTERGENIC
2R	10687961	2R_10687961_DEL [dm3] 2R_14800456_DEL [dm6]	GG	G	2.615e^-4	0.986	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	4429945	2L_4429945_SNP [dm3] 2L_4429945_SNP [dm6]	T	C	2.620e^-4	0.986	INTRON CG15431
3R	16571372	3R_16571372_SNP [dm3] 3R_20745650_SNP [dm6]	C	A	2.645e^-4	0.986	UPSTREAM CG31200 INTRON CG42322
3R	16571502	3R_16571502_SNP [dm3] 3R_20745780_SNP [dm6]	G	C	2.645e^-4	0.986	UPSTREAM CG31200 INTRON CG42322
3R	16571503	3R_16571503_SNP [dm3] 3R_20745781_SNP [dm6]	T	C	2.645e^-4	0.986	UPSTREAM CG31200 INTRON CG42322
X	20527070	X_20527070_SNP [dm3] X_20656043_SNP [dm6]	G	C	2.665e^-4	0.986	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20527076	X_20527076_SNP [dm3] X_20656049_SNP [dm6]	A	G	2.665e^-4	0.986	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20527093	X_20527093_SNP [dm3] X_20656066_SNP [dm6]	A	T	2.665e^-4	0.986	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4087267	X_4087267_SNP [dm3] X_4193234_SNP [dm6]	C	T	2.682e^-4	0.986	INTRON Fas2	regulatory region REDfly_CRMs
3R	23550954	3R_23550954_SNP [dm3] 3R_27725232_SNP [dm6]	A	C	2.691e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12211145	3R_12211145_SNP [dm3] 3R_16385423_SNP [dm6]	T	G	2.691e^-4	0.986	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	4140884	3R_4140884_SNP [dm3] 3R_8315162_SNP [dm6]	A	T	2.694e^-4	0.986	NON_SYNONYMOUS_CODING Coq2 DOWNSTREAM eIF4AIII	TF binding site mE1_TFBS_inv
X	2677101	X_2677101_SNP [dm3] X_2783068_SNP [dm6]	G	A	2.710e^-4	0.986	UTR_3_PRIME CG32795 INTRON kirre
3R	17853263	3R_17853263_SNP [dm3] 3R_22027541_SNP [dm6]	C	A	2.711e^-4	0.986	UPSTREAM ND42 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4801154	3L_4801154_SNP [dm3] 3L_4801154_SNP [dm6]	C	A	2.712e^-4	0.986	UPSTREAM CR44528 DOWNSTREAM CR45740 INTERGENIC
2L	7104425	2L_7104425_SNP [dm3] 2L_7104425_SNP [dm6]	T	G	2.713e^-4	0.986	INTRON Pvf3
3L	16938408	3L_16938408_INS [dm3] 3L_16945308_INS [dm6]	A	AA	2.714e^-4	0.986	INTRON Obp73a
2L	20142804	2L_20142804_SNP [dm3] 2L_20142804_SNP [dm6]	A	T	2.733e^-4	0.986	INTERGENIC
3R	26967716	3R_26967716_SNP [dm3] 3R_31141994_SNP [dm6]	A	G	2.734e^-4	0.986	INTRON Gycbeta100B
3R	17992833	3R_17992833_SNP [dm3] 3R_22167111_SNP [dm6]	T	C	2.763e^-4	0.986	INTRON SKIP	TF binding site mE1_TFBS_Kr
2R	11980266	2R_11980266_SNP [dm3] 2R_16092761_SNP [dm6]	G	A	2.768e^-4	0.986	INTRON Dg
X	20526929	X_20526929_SNP [dm3] X_20655902_SNP [dm6]	C	T	2.780e^-4	0.986	DOWNSTREAM CR45466 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12849624	3L_12849624_SNP [dm3] 3L_12856524_SNP [dm6]	G	C	2.782e^-4	0.986	UTR_3_PRIME Ent3 DOWNSTREAM CG32107	TF binding site mE1_TFBS_cad
X	20404361	X_20404361_SNP [dm3] X_20533334_SNP [dm6]	T	C	2.786e^-4	0.986	INTERGENIC
2L	4640210	2L_4640210_SNP [dm3] 2L_4640210_SNP [dm6]	C	T	2.788e^-4	0.986	INTERGENIC
X	3385759	X_3385759_SNP [dm3] X_3491726_SNP [dm6]	G	A	2.789e^-4	0.986	SYNONYMOUS_CODING Gas8 DOWNSTREAM CG10803 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19822539	2L_19822539_SNP [dm3] 2L_19822539_SNP [dm6]	C	A	2.802e^-4	0.986	INTRON sick
2L	8309389	2L_8309389_SNP [dm3] 2L_8309389_SNP [dm6]	C	A	2.811e^-4	0.986	SYNONYMOUS_CODING CG7818 DOWNSTREAM CG7810	TF binding site mE1_TFBS_sens
2R	9930184	2R_9930184_SNP [dm3] 2R_14042679_SNP [dm6]	T	A	2.814e^-4	0.986	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9930225	2R_9930225_SNP [dm3] 2R_14042720_SNP [dm6]	A	T	2.814e^-4	0.986	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9930232	2R_9930232_SNP [dm3] 2R_14042727_SNP [dm6]	G	T	2.814e^-4	0.986	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	11714319	2R_11714319_INS [dm3] 2R_15826814_INS [dm6]	T	TTT	2.816e^-4	0.986	UTR_3_PRIME Poxn INTRON tun
3L	13336552	3L_13336552_SNP [dm3] 3L_13343452_SNP [dm6]	T	A	2.818e^-4	0.986	DOWNSTREAM CR44559 INTERGENIC
3L	8756577	3L_8756577_SNP [dm3] 3L_8763477_SNP [dm6]	A	C	2.849e^-4	0.986	INTRON Fhos
3L	8756596	3L_8756596_SNP [dm3] 3L_8763496_SNP [dm6]	G	A	2.849e^-4	0.986	INTRON Fhos
2R	17560453	2R_17560453_SNP [dm3] 2R_21672948_SNP [dm6]	T	C	2.864e^-4	0.986	DOWNSTREAM CG15676 INTERGENIC
2L	3680687	2L_3680687_SNP [dm3] 2L_3680687_SNP [dm6]	G	A	2.870e^-4	0.986	INTRON CG34340
2L	3680712	2L_3680712_SNP [dm3] 2L_3680712_SNP [dm6]	T	G	2.870e^-4	0.986	INTRON CG34340
3R	4032540	3R_4032540_SNP [dm3] 3R_8206818_SNP [dm6]	G	T	2.874e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	2705446	X_2705446_SNP [dm3] X_2811413_SNP [dm6]	G	A	2.877e^-4	0.986	DOWNSTREAM CG12498 INTRON kirre
2L	14555249	2L_14555249_SNP [dm3] 2L_14555249_SNP [dm6]	T	A	2.886e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
3L	2989970	3L_2989970_SNP [dm3] 3L_2989970_SNP [dm6]	C	T	2.886e^-4	0.986	INTERGENIC
2R	17935045	2R_17935045_SNP [dm3] 2R_22047540_SNP [dm6]	A	T	2.893e^-4	0.986	INTERGENIC
3L	9196166	3L_9196166_SNP [dm3] 3L_9203066_SNP [dm6]	A	G	2.896e^-4	0.986	UTR_3_PRIME Slc45-1
2R	10500896	2R_10500896_SNP [dm3] 2R_14613391_SNP [dm6]	C	A	2.902e^-4	0.986	NON_SYNONYMOUS_CODING Su_var_2-HP2 INTRON Su_var_2-HP2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	417974	3L_417974_SNP [dm3] 3L_417974_SNP [dm6]	T	A	2.912e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
X	20318452	X_20318452_SNP [dm3] X_20447425_SNP [dm6]	A	G	2.925e^-4	0.986	DOWNSTREAM CG42578 INTERGENIC
3R	26823592	3R_26823592_SNP [dm3] 3R_30997870_SNP [dm6]	G	A	2.931e^-4	0.986	INTRON 5-HT7
3R	25173065	3R_25173065_SNP [dm3] 3R_29347343_SNP [dm6]	C	G	2.939e^-4	0.986	INTERGENIC
3L	11513577	3L_11513577_DEL [dm3] 3L_11520477_DEL [dm6]	TTTATT	T	2.939e^-4	0.986	DOWNSTREAM CG11714 INTRON Fuca
3L	15477498	3L_15477498_SNP [dm3] 3L_15484398_SNP [dm6]	A	G	2.947e^-4	0.986	UTR_3_PRIME Ran-like
3L	15477529	3L_15477529_SNP [dm3] 3L_15484429_SNP [dm6]	T	C	2.947e^-4	0.986	UTR_3_PRIME Ran-like
X	920011	X_920011_SNP [dm3] X_1025978_SNP [dm6]	G	A	2.953e^-4	0.986	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19381503	3R_19381503_SNP [dm3] 3R_23555781_SNP [dm6]	G	A	2.959e^-4	0.986	NON_SYNONYMOUS_CODING CG10164
X	20526908	X_20526908_SNP [dm3] X_20655881_SNP [dm6]	G	A	2.969e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13724195	3L_13724195_SNP [dm3] 3L_13731095_SNP [dm6]	C	T	2.975e^-4	0.986	INTRON bru-3
3L	9547837	3L_9547837_SNP [dm3] 3L_9554737_SNP [dm6]	C	T	2.979e^-4	0.986	INTRON CG42673
3L	3574810	3L_3574810_SNP [dm3] 3L_3574810_SNP [dm6]	G	C	2.989e^-4	0.986	INTRON Eip63E
3R	27328663	3R_27328663_SNP [dm3] 3R_31502941_SNP [dm6]	T	G	3.011e^-4	0.986	INTRON mey
2L	3191688	2L_3191688_SNP [dm3] 2L_3191688_SNP [dm6]	C	T	3.026e^-4	0.986	INTRON CG34393
2R	15820192	2R_15820192_SNP [dm3] 2R_19932687_SNP [dm6]	A	T	3.029e^-4	0.986	INTERGENIC
2L	1083669	2L_1083669_SNP [dm3] 2L_1083669_SNP [dm6]	A	G	3.032e^-4	0.986	UTR_3_PRIME Atg4a & 1 other DOWNSTREAM Atg4a
2L	10247834	2L_10247834_SNP [dm3] 2L_10247834_SNP [dm6]	T	A	3.033e^-4	0.986	UPSTREAM chico INTRON bsk
X	10194734	X_10194734_SNP [dm3] X_10300701_SNP [dm6]	A	T	3.043e^-4	0.986	INTRON alpha-Man-I
2L	12358098	2L_12358098_SNP [dm3] 2L_12358098_SNP [dm6]	C	T	3.058e^-4	0.986	SYNONYMOUS_CODING bru-2 DOWNSTREAM CG17010
2L	6779142	2L_6779142_SNP [dm3] 2L_6779142_SNP [dm6]	A	G	3.080e^-4	0.986	UTR_3_PRIME nrv1 DOWNSTREAM CG17378
2L	1650899	2L_1650899_DEL [dm3] 2L_1650899_DEL [dm6]	CC	C	3.080e^-4	0.986	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12355378	2L_12355378_SNP [dm3] 2L_12355378_SNP [dm6]	A	C	3.084e^-4	0.986	INTRON bru-2
X	919947	X_919947_SNP [dm3] X_1025914_SNP [dm6]	C	G	3.114e^-4	0.986	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site mE1_TFBS_HSA
2L	2648494	2L_2648494_SNP [dm3] 2L_2648494_SNP [dm6]	T	C	3.114e^-4	0.986	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 UPSTREAM CG9962 DOWNSTREAM CG43851
3R	25024504	3R_25024504_SNP [dm3] 3R_29198782_SNP [dm6]	G	A	3.130e^-4	0.986	INTRON CG14515
3R	25024506	3R_25024506_SNP [dm3] 3R_29198784_SNP [dm6]	T	A	3.130e^-4	0.986	INTRON CG14515
3R	19183213	3R_19183213_SNP [dm3] 3R_23357491_SNP [dm6]	C	T	3.149e^-4	0.986	SYNONYMOUS_CODING Sec13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	7624553	3L_7624553_SNP [dm3] 3L_7631453_SNP [dm6]	G	A	3.157e^-4	0.986	INTRON CG33275
X	6804654	X_6804654_SNP [dm3] X_6910621_SNP [dm6]	C	T	3.168e^-4	0.986	INTRON CG14431
2R	16068031	2R_16068031_SNP [dm3] 2R_20180526_SNP [dm6]	C	A	3.180e^-4	0.986	INTERGENIC
3R	13626678	3R_13626678_SNP [dm3] 3R_17800956_SNP [dm6]	C	G	3.183e^-4	0.986	NON_SYNONYMOUS_CODING CG17803 DOWNSTREAM CG17806
2L	12807907	2L_12807907_SNP [dm3] 2L_12807907_SNP [dm6]	A	G	3.183e^-4	0.986	EXON CR43818
3L	7908473	3L_7908473_SNP [dm3] 3L_7915373_SNP [dm6]	G	A	3.184e^-4	0.986	UPSTREAM CG32368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3678343	2L_3678343_SNP [dm3] 2L_3678343_SNP [dm6]	T	A	3.188e^-4	0.986	INTRON CG34340
2R	19091722	2R_19091722_SNP [dm3] 2R_23204199_SNP [dm6]	C	A	3.191e^-4	0.986	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	11471572	2R_11471572_SNP [dm3] 2R_15584067_SNP [dm6]	G	C	3.212e^-4	0.986	INTERGENIC
2R	11471586	2R_11471586_SNP [dm3] 2R_15584081_SNP [dm6]	A	G	3.212e^-4	0.986	INTERGENIC
2R	11471591	2R_11471591_SNP [dm3] 2R_15584086_SNP [dm6]	A	T	3.212e^-4	0.986	INTERGENIC
2R	11471609	2R_11471609_SNP [dm3] 2R_15584104_SNP [dm6]	T	C	3.212e^-4	0.986	INTERGENIC
2L	3858221	2L_3858221_SNP [dm3] 2L_3858221_SNP [dm6]	C	G	3.216e^-4	0.986	INTERGENIC
3R	24220233	3R_24220233_SNP [dm3] 3R_28394511_SNP [dm6]	A	G	3.254e^-4	0.986	INTERGENIC
3L	5956442	3L_5956442_SNP [dm3] 3L_5963342_SNP [dm6]	G	C	3.264e^-4	0.986	INTERGENIC
3R	7745399	3R_7745399_INS [dm3] 3R_11919677_INS [dm6]	A	AA	3.269e^-4	0.986	INTRON Cad87A
3L	10496645	3L_10496645_SNP [dm3] 3L_10503545_SNP [dm6]	G	A	3.274e^-4	0.986	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9337737	3L_9337737_SNP [dm3] 3L_9344637_SNP [dm6]	G	C	3.276e^-4	0.986	INTRON PGRP-LC
3R	18357574	3R_18357574_SNP [dm3] 3R_22531852_SNP [dm6]	T	C	3.286e^-4	0.986	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
3R	17844078	3R_17844078_SNP [dm3] 3R_22018356_SNP [dm6]	G	A	3.289e^-4	0.986	INTRON CG6439	TF binding site BDTNP1_TFBS_dl
3R	17844082	3R_17844082_SNP [dm3] 3R_22018360_SNP [dm6]	A	C	3.289e^-4	0.986	INTRON CG6439	TF binding site BDTNP1_TFBS_dl
3R	17844083	3R_17844083_SNP [dm3] 3R_22018361_SNP [dm6]	G	A	3.289e^-4	0.986	INTRON CG6439	TF binding site BDTNP1_TFBS_dl
2R	18461680	2R_18461680_SNP [dm3] 2R_22574175_SNP [dm6]	G	A	3.300e^-4	0.986	INTRON dnr1
2L	13308307	2L_13308307_SNP [dm3] 2L_13308307_SNP [dm6]	G	A	3.310e^-4	0.986	DOWNSTREAM CG16825 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	16697314	2R_16697314_SNP [dm3] 2R_20809809_SNP [dm6]	A	G	3.310e^-4	0.986	INTERGENIC
2R	11472449	2R_11472449_SNP [dm3] 2R_15584944_SNP [dm6]	T	A	3.331e^-4	0.986	INTERGENIC
3L	5935829	3L_5935829_SNP [dm3] 3L_5942729_SNP [dm6]	G	A	3.332e^-4	0.986	INTRON CG33993
3R	26717181	3R_26717181_SNP [dm3] 3R_30891459_SNP [dm6]	G	C	3.363e^-4	0.986	INTERGENIC
3R	5062512	3R_5062512_INS [dm3] 3R_9236790_INS [dm6]	T	TT	3.368e^-4	0.986	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	16452986	3R_16452986_SNP [dm3] 3R_20627264_SNP [dm6]	A	G	3.373e^-4	0.986	UTR_3_PRIME H DOWNSTREAM H
2L	2648501	2L_2648501_SNP [dm3] 2L_2648501_SNP [dm6]	A	T	3.411e^-4	0.986	NON_SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125 UPSTREAM CG9962 DOWNSTREAM CG43851
3L	6666830	3L_6666830_INS [dm3] 3L_6673730_INS [dm6]	A	AT	3.416e^-4	0.986	INTERGENIC
3R	18358064	3R_18358064_SNP [dm3] 3R_22532342_SNP [dm6]	C	G	3.425e^-4	0.986	UTR_3_PRIME CG5326 UPSTREAM CG33093
2L	9030749	2L_9030749_SNP [dm3] 2L_9030749_SNP [dm6]	G	C	3.469e^-4	0.986	INTRON CG9582 & 1 other
X	5115068	X_5115068_SNP [dm3] X_5221035_SNP [dm6]	G	A	3.493e^-4	0.986	INTRON CG15465 & 1 other
3L	1642205	3L_1642205_SNP [dm3] 3L_1642205_SNP [dm6]	C	T	3.495e^-4	0.986	SYNONYMOUS_CODING alphaCOP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	2610285	3L_2610285_SNP [dm3] 3L_2610285_SNP [dm6]	C	T	3.497e^-4	0.986	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3750776	2L_3750776_SNP [dm3] 2L_3750776_SNP [dm6]	A	G	3.498e^-4	0.986	INTRON CG10019
2L	3750808	2L_3750808_SNP [dm3] 2L_3750808_SNP [dm6]	C	T	3.498e^-4	0.986	NON_SYNONYMOUS_CODING CG10019
3R	12048709	3R_12048709_SNP [dm3] 3R_16222987_SNP [dm6]	A	C	3.532e^-4	0.986	UPSTREAM CR45643 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19811944	2L_19811944_SNP [dm3] 2L_19811944_SNP [dm6]	T	C	3.541e^-4	0.986	UPSTREAM snRNA:U2:38ABb DOWNSTREAM snRNA:U5:38ABa INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2702262	X_2702262_SNP [dm3] X_2808229_SNP [dm6]	T	C	3.544e^-4	0.986	INTRON kirre
3R	9751978	3R_9751978_SNP [dm3] 3R_13926256_SNP [dm6]	A	G	3.567e^-4	0.986	INTERGENIC
2L	1300265	2L_1300265_SNP [dm3] 2L_1300265_SNP [dm6]	A	C	3.573e^-4	0.986	INTERGENIC
3R	5719178	3R_5719178_SNP [dm3] 3R_9893456_SNP [dm6]	G	T	3.585e^-4	0.986	INTRON Glut4EF
2L	5618872	2L_5618872_SNP [dm3] 2L_5618872_SNP [dm6]	G	A	3.587e^-4	0.986	UPSTREAM CG14010 DOWNSTREAM CR44796 INTERGENIC
3L	9081917	3L_9081917_SNP [dm3] 3L_9088817_SNP [dm6]	C	T	3.598e^-4	0.986	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	9081928	3L_9081928_SNP [dm3] 3L_9088828_SNP [dm6]	A	C	3.598e^-4	0.986	SYNONYMOUS_CODING Tequila INTRON Tequila
3L	9082021	3L_9082021_SNP [dm3] 3L_9088921_SNP [dm6]	A	T	3.598e^-4	0.986	SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad
3R	14135128	3R_14135128_SNP [dm3] 3R_18309406_SNP [dm6]	T	A	3.630e^-4	0.986	START_GAINED PKD UTR_5_PRIME PKD
3L	4801109	3L_4801109_SNP [dm3] 3L_4801109_SNP [dm6]	C	G	3.639e^-4	0.986	UPSTREAM CR44528 DOWNSTREAM CR45740 INTERGENIC
X	20533810	X_20533810_SNP [dm3] X_20662783_SNP [dm6]	T	G	3.643e^-4	0.986	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	20533811	X_20533811_SNP [dm3] X_20662784_SNP [dm6]	T	C	3.643e^-4	0.986	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	20533813	X_20533813_SNP [dm3] X_20662786_SNP [dm6]	T	A	3.643e^-4	0.986	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13098097	2L_13098097_SNP [dm3] 2L_13098097_SNP [dm6]	G	T	3.656e^-4	0.986	DOWNSTREAM CR45447 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	15360021	3R_15360021_SNP [dm3] 3R_19534299_SNP [dm6]	G	C	3.662e^-4	0.986	INTRON Dys
3L	2574247	3L_2574247_SNP [dm3] 3L_2574247_SNP [dm6]	T	C	3.672e^-4	0.986	INTRON msn
2L	12585818	2L_12585818_SNP [dm3] 2L_12585818_SNP [dm6]	A	G	3.690e^-4	0.986	INTERGENIC
3R	23908833	3R_23908833_SNP [dm3] 3R_28083111_SNP [dm6]	A	T	3.693e^-4	0.986	INTRON CG34362
2L	19823829	2L_19823829_SNP [dm3] 2L_19823829_SNP [dm6]	C	T	3.703e^-4	0.986	INTRON sick
2L	4878122	2L_4878122_SNP [dm3] 2L_4878122_SNP [dm6]	T	C	3.726e^-4	0.986	UTR_3_PRIME Cf2
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	3.755e^-4	0.986	UTR_3_PRIME Syt1
3L	7908803	3L_7908803_SNP [dm3] 3L_7915703_SNP [dm6]	T	G	3.771e^-4	0.986	NON_SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	11437407	X_11437407_SNP [dm3] X_11543374_SNP [dm6]	G	A	3.771e^-4	0.986	INTRON Drak	TF binding site mE1_TFBS_HSA
3L	2610341	3L_2610341_SNP [dm3] 3L_2610341_SNP [dm6]	G	A	3.781e^-4	0.986	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9788799	2R_9788799_SNP [dm3] 2R_13901294_SNP [dm6]	T	A	3.787e^-4	0.986	INTRON shot	TF binding site mE1_TFBS_cad
2L	19822533	2L_19822533_DEL [dm3] 2L_19822533_DEL [dm6]	CC	C	3.790e^-4	0.986	INTRON sick
2L	4429843	2L_4429843_SNP [dm3] 2L_4429843_SNP [dm6]	A	T	3.794e^-4	0.986	INTRON CG15431
3L	10268484	3L_10268484_SNP [dm3] 3L_10275384_SNP [dm6]	A	T	3.795e^-4	0.986	DOWNSTREAM Or67d INTERGENIC
2R	9930296	2R_9930296_SNP [dm3] 2R_14042791_SNP [dm6]	T	A	3.796e^-4	0.986	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	5372497	2L_5372497_DEL [dm3] 2L_5372497_DEL [dm6]	CAGAGCCG	C	3.816e^-4	0.986	INTERGENIC
2L	4316687	2L_4316687_SNP [dm3] 2L_4316687_SNP [dm6]	A	G	3.834e^-4	0.986	DOWNSTREAM tutl INTRON tutl
X	20533802	X_20533802_SNP [dm3] X_20662775_SNP [dm6]	T	A	3.836e^-4	0.986	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9547817	3L_9547817_SNP [dm3] 3L_9554717_SNP [dm6]	A	G	3.856e^-4	0.986	INTRON CG42673
X	20526853	X_20526853_DEL [dm3] X_20655826_DEL [dm6]	ATCA	A	3.880e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9201815	3R_9201815_SNP [dm3] 3R_13376093_SNP [dm6]	T	G	3.884e^-4	0.986	UPSTREAM CR44138 INTRON CG9813	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6289817	3L_6289817_SNP [dm3] 3L_6296717_SNP [dm6]	A	G	3.894e^-4	0.986	INTERGENIC
3L	3467047	3L_3467047_SNP [dm3] 3L_3467047_SNP [dm6]	C	A	3.897e^-4	0.986	SYNONYMOUS_CODING CycJ DOWNSTREAM armi & 1 other
2L	5715797	2L_5715797_SNP [dm3] 2L_5715797_SNP [dm6]	G	C	3.902e^-4	0.986	SYNONYMOUS_CODING CG14007 UPSTREAM CG34011 EXON CR44818
3R	16738762	3R_16738762_SNP [dm3] 3R_20913040_SNP [dm6]	T	A	3.907e^-4	0.986	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8093873	2R_8093873_SNP [dm3] 2R_12206368_SNP [dm6]	C	A	3.909e^-4	0.986	EXON CR45276	TF binding site mE1_TFBS_cad
3L	13336679	3L_13336679_SNP [dm3] 3L_13343579_SNP [dm6]	A	C	3.913e^-4	0.986	EXON CR44559
2L	5760074	2L_5760074_SNP [dm3] 2L_5760074_SNP [dm6]	T	A	3.917e^-4	0.986	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
2R	19091705	2R_19091705_SNP [dm3] 2R_23204182_SNP [dm6]	G	A	3.924e^-4	0.986	UPSTREAM CG34371 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	5760055	2L_5760055_SNP [dm3] 2L_5760055_SNP [dm6]	A	C	3.929e^-4	0.986	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
3L	14640938	3L_14640938_SNP [dm3] 3L_14647838_SNP [dm6]	C	T	3.936e^-4	0.986	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12355507	2L_12355507_SNP [dm3] 2L_12355507_SNP [dm6]	A	T	3.949e^-4	0.986	UPSTREAM CG17010 INTRON bru-2
3R	16571318	3R_16571318_SNP [dm3] 3R_20745596_SNP [dm6]	A	G	3.964e^-4	0.986	UPSTREAM CG31200 INTRON CG42322
3R	25833677	3R_25833677_SNP [dm3] 3R_30007955_SNP [dm6]	T	G	3.992e^-4	0.986	SYNONYMOUS_CODING CG7912 INTRON Nlp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3286114	2L_3286114_SNP [dm3] 2L_3286114_SNP [dm6]	C	T	4.005e^-4	0.986	INTERGENIC
2L	10985688	2L_10985688_SNP [dm3] 2L_10985688_SNP [dm6]	T	C	4.014e^-4	0.986	SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9197015	3R_9197015_SNP [dm3] 3R_13371293_SNP [dm6]	A	G	4.026e^-4	0.986	SYNONYMOUS_CODING Lip3 DOWNSTREAM CheA87a
3L	14640201	3L_14640201_SNP [dm3] 3L_14647101_SNP [dm6]	G	A	4.040e^-4	0.986	INTRON dlp
3L	14641706	3L_14641706_SNP [dm3] 3L_14648606_SNP [dm6]	C	A	4.040e^-4	0.986	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20532653	2L_20532653_SNP [dm3] 2L_20532653_SNP [dm6]	G	A	4.056e^-4	0.986	DOWNSTREAM CG44270 INTERGENIC
3R	9821799	3R_9821799_INS [dm3] 3R_13996077_INS [dm6]	A	ATAACAA	4.057e^-4	0.986	INTRON rdx
X	3996943	X_3996943_SNP [dm3] X_4102910_SNP [dm6]	G	A	4.069e^-4	0.986	UTR_3_PRIME CG15375 DOWNSTREAM Xpac	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	3996961	X_3996961_SNP [dm3] X_4102928_SNP [dm6]	A	T	4.069e^-4	0.986	UTR_3_PRIME CG15375 DOWNSTREAM Xpac	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	12460068	2R_12460068_SNP [dm3] 2R_16572563_SNP [dm6]	C	T	4.079e^-4	0.986	SYNONYMOUS_CODING CG4927
X	16756014	X_16756014_SNP [dm3] X_16861981_SNP [dm6]	C	G	4.081e^-4	0.986	INTRON CG13003
2R	11968893	2R_11968893_SNP [dm3] 2R_16081388_SNP [dm6]	G	A	4.087e^-4	0.986	UTR_3_PRIME Dg DOWNSTREAM Dg
2L	5618957	2L_5618957_SNP [dm3] 2L_5618957_SNP [dm6]	C	T	4.103e^-4	0.986	DOWNSTREAM CR44796 INTERGENIC
2L	5456174	2L_5456174_SNP [dm3] 2L_5456174_SNP [dm6]	C	T	4.149e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2617220	3L_2617220_SNP [dm3] 3L_2617220_SNP [dm6]	G	A	4.153e^-4	0.986	INTRON Pxn	TF binding site mE1_TFBS_HSA
2R	15058450	2R_15058450_SNP [dm3] 2R_19170945_SNP [dm6]	C	T	4.158e^-4	0.986	SYNONYMOUS_CODING CG10737
3L	15870106	3L_15870106_SNP [dm3] 3L_15877006_SNP [dm6]	T	A	4.166e^-4	0.986	UPSTREAM CR44051 INTRON pHCl
3L	9053223	3L_9053223_SNP [dm3] 3L_9060123_SNP [dm6]	T	C	4.237e^-4	0.986	INTRON Argk
2R	12408099	2R_12408099_SNP [dm3] 2R_16520594_SNP [dm6]	C	T	4.237e^-4	0.986	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13792865	3L_13792865_SNP [dm3] 3L_13799765_SNP [dm6]	T	C	4.238e^-4	0.986	INTRON bru-3
3R	26520744	3R_26520744_SNP [dm3] 3R_30695022_SNP [dm6]	A	G	4.254e^-4	0.986	SYNONYMOUS_CODING CG12069 DOWNSTREAM Pka-C2
X	2328932	X_2328932_SNP [dm3] X_2434899_SNP [dm6]	G	T	4.265e^-4	0.986	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18348773	2R_18348773_SNP [dm3] 2R_22461268_SNP [dm6]	C	T	4.269e^-4	0.986	INTRON CG10384
3R	25024503	3R_25024503_SNP [dm3] 3R_29198781_SNP [dm6]	G	A	4.277e^-4	0.986	INTRON CG14515
X	11151575	X_11151575_SNP [dm3] X_11257542_SNP [dm6]	T	C	4.291e^-4	0.986	INTRON CG44422
3R	16452800	3R_16452800_SNP [dm3] 3R_20627078_SNP [dm6]	A	T	4.310e^-4	0.986	UTR_3_PRIME H
3R	14761495	3R_14761495_SNP [dm3] 3R_18935773_SNP [dm6]	T	A	4.331e^-4	0.986	INTRON CG42613
2R	12779517	2R_12779517_SNP [dm3] 2R_16892012_SNP [dm6]	T	C	4.342e^-4	0.986	INTRON CG8910	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2916283	3L_2916283_SNP [dm3] 3L_2916283_SNP [dm6]	A	G	4.350e^-4	0.986	SYNONYMOUS_CODING CG9970 INTRON Shab
2L	5372449	2L_5372449_SNP [dm3] 2L_5372449_SNP [dm6]	T	C	4.364e^-4	0.986	INTERGENIC
2R	11471413	2R_11471413_SNP [dm3] 2R_15583908_SNP [dm6]	A	T	4.365e^-4	0.986	INTERGENIC
2L	9013758	2L_9013758_SNP [dm3] 2L_9013758_SNP [dm6]	G	A	4.367e^-4	0.986	SYNONYMOUS_CODING Rcd-1r UTR_3_PRIME CG13102 DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16725601	3R_16725601_SNP [dm3] 3R_20899879_SNP [dm6]	T	C	4.367e^-4	0.986	INTERGENIC
2L	19826936	2L_19826936_SNP [dm3] 2L_19826936_SNP [dm6]	G	T	4.395e^-4	0.986	UTR_5_PRIME sick UPSTREAM sick INTRON sick
3R	18640485	3R_18640485_SNP [dm3] 3R_22814763_SNP [dm6]	C	A	4.398e^-4	0.986	SYNONYMOUS_CODING CG13840
X	9450034	X_9450034_SNP [dm3] X_9556001_SNP [dm6]	T	C	4.400e^-4	0.986	SYNONYMOUS_CODING CG15317 DOWNSTREAM RpS28b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	4429876	2L_4429876_SNP [dm3] 2L_4429876_SNP [dm6]	T	G	4.411e^-4	0.986	INTRON CG15431
X	9727189	X_9727189_SNP [dm3] X_9833156_SNP [dm6]	A	G	4.432e^-4	0.986	INTRON CG32698
3L	485649	3L_485649_SNP [dm3] 3L_485649_SNP [dm6]	C	T	4.452e^-4	0.986	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19073413	2R_19073413_SNP [dm3] 2R_23185890_SNP [dm6]	G	T	4.474e^-4	0.986	DOWNSTREAM CG13539 INTRON CG34371
X	3813976	X_3813976_SNP [dm3] X_3919943_SNP [dm6]	G	A	4.492e^-4	0.986	INTRON CG42541
2L	13969454	2L_13969454_SNP [dm3] 2L_13969454_SNP [dm6]	C	T	4.507e^-4	0.986	SYNONYMOUS_CODING NimB4 UPSTREAM NimB5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10737232	3R_10737232_SNP [dm3] 3R_14911510_SNP [dm6]	A	T	4.512e^-4	0.986	INTERGENIC
2R	17939476	2R_17939476_SNP [dm3] 2R_22051971_SNP [dm6]	G	C	4.518e^-4	0.986	INTERGENIC
3R	24693813	3R_24693813_SNP [dm3] 3R_28868091_SNP [dm6]	T	C	4.525e^-4	0.986	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
2L	13950997	2L_13950997_SNP [dm3] 2L_13950997_SNP [dm6]	G	C	4.528e^-4	0.986	INTRON Ance-3
2L	6507026	2L_6507026_SNP [dm3] 2L_6507026_SNP [dm6]	C	T	4.531e^-4	0.986	DOWNSTREAM CR44775 INTRON CG31637
3L	2006010	3L_2006010_SNP [dm3] 3L_2006010_SNP [dm6]	C	T	4.567e^-4	0.986	UPSTREAM CG42841 INTERGENIC
3R	13256597	3R_13256597_SNP [dm3] 3R_17430875_SNP [dm6]	A	G	4.578e^-4	0.986	INTRON CG5873
2R	11464499	2R_11464499_SNP [dm3] 2R_15576994_SNP [dm6]	A	C	4.578e^-4	0.986	INTERGENIC
2L	5476379	2L_5476379_SNP [dm3] 2L_5476379_SNP [dm6]	C	T	4.597e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	12460069	2R_12460069_SNP [dm3] 2R_16572564_SNP [dm6]	T	C	4.599e^-4	0.986	NON_SYNONYMOUS_CODING CG4927
3R	18702023	3R_18702023_SNP [dm3] 3R_22876301_SNP [dm6]	A	G	4.607e^-4	0.986	INTERGENIC
X	6213448	X_6213448_SNP [dm3] X_6319415_SNP [dm6]	A	T	4.610e^-4	0.986	INTRON CG15894
X	3813461	X_3813461_SNP [dm3] X_3919428_SNP [dm6]	C	G	4.622e^-4	0.986	INTRON CG42541
X	20528839	X_20528839_SNP [dm3] X_20657812_SNP [dm6]	A	G	4.628e^-4	0.986	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466	TF binding site BDTNP1_TFBS_dl
3R	17826921	3R_17826921_SNP [dm3] 3R_22001199_SNP [dm6]	G	C	4.642e^-4	0.986	INTRON Eip93F	TF binding site mE1_TFBS_HSA
X	3814160	X_3814160_SNP [dm3] X_3920127_SNP [dm6]	C	T	4.649e^-4	0.986	INTRON CG42541
2R	14472546	2R_14472546_SNP [dm3] 2R_18585041_SNP [dm6]	T	A	4.653e^-4	0.986	INTRON GEFmeso	TF binding site mE1_TFBS_HSA
3L	1004576	3L_1004576_SNP [dm3] 3L_1004576_SNP [dm6]	G	A	4.697e^-4	0.986	INTRON trio
X	16661280	X_16661280_SNP [dm3] X_16767247_SNP [dm6]	T	A	4.719e^-4	0.986	INTRON if
2R	6954898	2R_6954898_SNP [dm3] 2R_11067393_SNP [dm6]	T	C	4.727e^-4	0.986	INTRON luna	TF binding site mE1_TFBS_chinmo
2R	12545609	2R_12545609_INS [dm3] 2R_16658104_INS [dm6]	A	AA	4.729e^-4	0.986	INTRON Picot
2L	15091513	2L_15091513_SNP [dm3] 2L_15091513_SNP [dm6]	A	C	4.730e^-4	0.986	NON_SYNONYMOUS_CODING CG15270
2L	7102899	2L_7102899_DEL [dm3] 2L_7102899_DEL [dm6]	CT	C	4.753e^-4	0.986	INTRON Pvf3
X	5487567	X_5487567_SNP [dm3] X_5593534_SNP [dm6]	T	A	4.797e^-4	0.986	UPSTREAM Vsx1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14555224	2L_14555224_SNP [dm3] 2L_14555224_SNP [dm6]	C	T	4.814e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
2L	14555229	2L_14555229_SNP [dm3] 2L_14555229_SNP [dm6]	T	A	4.814e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
2L	14555262	2L_14555262_SNP [dm3] 2L_14555262_SNP [dm6]	T	C	4.814e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
3L	7909192	3L_7909192_SNP [dm3] 3L_7916092_SNP [dm6]	C	T	4.825e^-4	0.986	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7909196	3L_7909196_SNP [dm3] 3L_7916096_SNP [dm6]	T	C	4.825e^-4	0.986	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7909198	3L_7909198_SNP [dm3] 3L_7916098_SNP [dm6]	T	G	4.825e^-4	0.986	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	9581466	2L_9581466_SNP [dm3] 2L_9581466_SNP [dm6]	A	T	4.866e^-4	0.986	NON_SYNONYMOUS_CODING gcm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8757018	3L_8757018_DEL [dm3] 3L_8763918_DEL [dm6]	AT	A	4.877e^-4	0.986	INTRON Fhos
2R	19302102	2R_19302102_SNP [dm3] 2R_23414579_SNP [dm6]	A	G	4.890e^-4	0.986	NON_SYNONYMOUS_CODING CG9812	TF binding site mE1_TFBS_chinmo
2R	19580282	2R_19580282_SNP [dm3] 2R_23692759_SNP [dm6]	C	T	4.892e^-4	0.986	SYNONYMOUS_CODING CG30183	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5769220	3L_5769220_SNP [dm3] 3L_5776120_SNP [dm6]	T	C	4.895e^-4	0.986	UTR_3_PRIME scny DOWNSTREAM vito & 1 other
3L	5769221	3L_5769221_SNP [dm3] 3L_5776121_SNP [dm6]	T	C	4.895e^-4	0.986	UTR_3_PRIME scny DOWNSTREAM vito & 1 other
3R	13663683	3R_13663683_SNP [dm3] 3R_17837961_SNP [dm6]	G	T	4.906e^-4	0.986	INTRON tinc	transposable element FlyBase
2R	10644103	2R_10644103_SNP [dm3] 2R_14756598_SNP [dm6]	A	G	4.907e^-4	0.986	NON_SYNONYMOUS_CODING CG12859 UPSTREAM CG10151 DOWNSTREAM Trs31	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	20534993	X_20534993_SNP [dm3] X_20663966_SNP [dm6]	G	T	4.912e^-4	0.986	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10167949	2L_10167949_SNP [dm3] 2L_10167949_SNP [dm6]	C	T	4.915e^-4	0.986	INTRON CG44153
2R	17642560	2R_17642560_SNP [dm3] 2R_21755055_SNP [dm6]	A	G	4.924e^-4	0.986	INTERGENIC
2L	1650910	2L_1650910_SNP [dm3] 2L_1650910_SNP [dm6]	G	A	4.929e^-4	0.986	UPSTREAM chinmo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6593836	X_6593836_DEL [dm3] X_6699803_DEL [dm6]	TA	C	4.929e^-4	0.986	UTR_5_PRIME CG14441 INTRON CG14441	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13441488	2L_13441488_SNP [dm3] 2L_13441488_SNP [dm6]	A	C	4.949e^-4	0.986	INTRON CG42784 EXON CR45683
X	19762240	X_19762240_INS [dm3] X_19868207_INS [dm6]	A	TT	4.955e^-4	0.986	INTRON Hers
2R	9644119	2R_9644119_SNP [dm3] 2R_13756614_SNP [dm6]	T	A	4.960e^-4	0.986	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6555513	2R_6555513_SNP [dm3] 2R_10668008_SNP [dm6]	A	C	4.963e^-4	0.986	INTERGENIC
3R	4376881	3R_4376881_SNP [dm3] 3R_8551159_SNP [dm6]	A	G	4.973e^-4	0.986	INTERGENIC
3R	26936510	3R_26936510_SNP [dm3] 3R_31110788_SNP [dm6]	G	A	4.975e^-4	0.986	INTERGENIC
3R	16892157	3R_16892157_SNP [dm3] 3R_21066435_SNP [dm6]	T	C	4.976e^-4	0.986	INTRON AnxB9
3R	9310781	3R_9310781_SNP [dm3] 3R_13485059_SNP [dm6]	C	T	4.976e^-4	0.986	INTERGENIC
X	3764992	X_3764992_SNP [dm3] X_3870959_SNP [dm6]	A	C	5.015e^-4	0.986	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3R	24172286	3R_24172286_SNP [dm3] 3R_28346564_SNP [dm6]	A	G	5.019e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11475078	2R_11475078_SNP [dm3] 2R_15587573_SNP [dm6]	C	G	5.035e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4760193	X_4760193_SNP [dm3] X_4866160_SNP [dm6]	A	G	5.036e^-4	0.986	INTRON CG42594
2L	8048392	2L_8048392_SNP [dm3] 2L_8048392_SNP [dm6]	T	C	5.037e^-4	0.986	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8048518	2L_8048518_SNP [dm3] 2L_8048518_SNP [dm6]	G	A	5.037e^-4	0.986	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2L	8048524	2L_8048524_SNP [dm3] 2L_8048524_SNP [dm6]	C	T	5.037e^-4	0.986	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2R	13191870	2R_13191870_SNP [dm3] 2R_17304365_SNP [dm6]	G	T	5.037e^-4	0.986	INTRON mbl
2R	6353918	2R_6353918_SNP [dm3] 2R_10466413_SNP [dm6]	C	G	5.037e^-4	0.986	NON_SYNONYMOUS_CODING Caf1-105 DOWNSTREAM Galphao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7206367	2R_7206367_SNP [dm3] 2R_11318862_SNP [dm6]	A	G	5.037e^-4	0.986	UPSTREAM nompA DOWNSTREAM Or47b INTERGENIC
2R	8093874	2R_8093874_SNP [dm3] 2R_12206369_SNP [dm6]	G	A	5.037e^-4	0.986	EXON CR45276	TF binding site mE1_TFBS_cad
2R	8093892	2R_8093892_SNP [dm3] 2R_12206387_SNP [dm6]	G	A	5.037e^-4	0.986	EXON CR45276	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1061298	3L_1061298_SNP [dm3] 3L_1061298_SNP [dm6]	T	G	5.037e^-4	0.986	INTRON bab1
3L	10920333	3L_10920333_SNP [dm3] 3L_10927233_SNP [dm6]	C	G	5.037e^-4	0.986	INTERGENIC
X	11652062	X_11652062_SNP [dm3] X_11758029_SNP [dm6]	T	A	5.037e^-4	0.986	INTRON m
X	11652067	X_11652067_SNP [dm3] X_11758034_SNP [dm6]	G	C	5.037e^-4	0.986	INTRON m
X	15513106	X_15513106_SNP [dm3] X_15619073_SNP [dm6]	C	T	5.037e^-4	0.986	INTRON sog	TF binding site mE1_TFBS_cad
X	15513419	X_15513419_SNP [dm3] X_15619386_SNP [dm6]	C	T	5.037e^-4	0.986	INTRON sog	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12243303	X_12243303_SNP [dm3] X_12349270_SNP [dm6]	T	G	5.060e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15963445	X_15963445_SNP [dm3] X_16069412_SNP [dm6]	A	G	5.062e^-4	0.986	SYNONYMOUS_CODING dpr18 DOWNSTREAM Nipsnap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
X	6804727	X_6804727_DEL [dm3] X_6910694_DEL [dm6]	ATTATT	A	5.071e^-4	0.986	INTRON CG14431
3L	1192482	3L_1192482_SNP [dm3] 3L_1192482_SNP [dm6]	T	A	5.078e^-4	0.986	INTRON Trh	TF binding site mE1_TFBS_chinmo
3L	1192494	3L_1192494_SNP [dm3] 3L_1192494_SNP [dm6]	C	T	5.078e^-4	0.986	INTRON Trh	TF binding site mE1_TFBS_chinmo
3R	24477407	3R_24477407_SNP [dm3] 3R_28651685_SNP [dm6]	G	T	5.096e^-4	0.986	INTERGENIC
3R	23922182	3R_23922182_SNP [dm3] 3R_28096460_SNP [dm6]	A	T	5.111e^-4	0.986	INTERGENIC
2L	763746	2L_763746_SNP [dm3] 2L_763746_SNP [dm6]	A	G	5.112e^-4	0.986	INTERGENIC
3L	14644200	3L_14644200_SNP [dm3] 3L_14651100_SNP [dm6]	C	T	5.115e^-4	0.986	INTRON dlp	TF binding site mE1_TFBS_cnc
3R	10994960	3R_10994960_SNP [dm3] 3R_15169238_SNP [dm6]	G	A	5.119e^-4	0.986	INTRON Gyc88E
2R	12366379	2R_12366379_SNP [dm3] 2R_16478874_SNP [dm6]	T	C	5.131e^-4	0.986	INTERGENIC
3R	24478271	3R_24478271_SNP [dm3] 3R_28652549_SNP [dm6]	G	C	5.163e^-4	0.986	INTERGENIC
3R	4671458	3R_4671458_SNP [dm3] 3R_8845736_SNP [dm6]	A	G	5.163e^-4	0.986	UTR_5_PRIME pyd INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	24221157	3R_24221157_SNP [dm3] 3R_28395435_SNP [dm6]	T	A	5.167e^-4	0.986	INTERGENIC
3L	2610215	3L_2610215_SNP [dm3] 3L_2610215_SNP [dm6]	A	T	5.173e^-4	0.986	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_chinmo
2R	11039807	2R_11039807_SNP [dm3] 2R_15152302_SNP [dm6]	G	T	5.174e^-4	0.986	INTERGENIC
3R	9151242	3R_9151242_SNP [dm3] 3R_13325520_SNP [dm6]	T	A	5.178e^-4	0.986	INTERGENIC
3R	5696915	3R_5696915_SNP [dm3] 3R_9871193_SNP [dm6]	A	C	5.181e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_sens
2R	6737367	2R_6737367_SNP [dm3] 2R_10849862_SNP [dm6]	G	A	5.190e^-4	0.986	INTRON CG30015	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5453564	2L_5453564_SNP [dm3] 2L_5453564_SNP [dm6]	G	T	5.202e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	4361484	3R_4361484_SNP [dm3] 3R_8535762_SNP [dm6]	G	A	5.212e^-4	0.986	INTERGENIC
3L	964153	3L_964153_SNP [dm3] 3L_964153_SNP [dm6]	T	C	5.212e^-4	0.986	INTRON Glut1
3L	964192	3L_964192_SNP [dm3] 3L_964192_SNP [dm6]	T	C	5.212e^-4	0.986	INTRON Glut1
3L	964204	3L_964204_SNP [dm3] 3L_964204_SNP [dm6]	G	A	5.212e^-4	0.986	INTRON Glut1
3R	17875093	3R_17875093_SNP [dm3] 3R_22049371_SNP [dm6]	A	G	5.232e^-4	0.986	INTRON how	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6525418	2R_6525418_SNP [dm3] 2R_10637913_SNP [dm6]	T	A	5.233e^-4	0.986	INTRON CG11883	TF binding site mE1_TFBS_cad
3R	24042569	3R_24042569_SNP [dm3] 3R_28216847_SNP [dm6]	A	G	5.236e^-4	0.986	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3L	19420809	3L_19420809_SNP [dm3] 3L_19427709_SNP [dm6]	C	T	5.265e^-4	0.986	INTERGENIC
3R	18609717	3R_18609717_SNP [dm3] 3R_22783995_SNP [dm6]	C	T	5.278e^-4	0.986	INTRON CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13591362	3R_13591362_SNP [dm3] 3R_17765640_SNP [dm6]	G	A	5.327e^-4	0.986	INTERGENIC
3L	7908940	3L_7908940_SNP [dm3] 3L_7915840_SNP [dm6]	C	T	5.340e^-4	0.986	UTR_3_PRIME CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15898953	2L_15898953_SNP [dm3] 2L_15898953_SNP [dm6]	C	A	5.343e^-4	0.986	SYNONYMOUS_CODING CG31823	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6887151	2L_6887151_SNP [dm3] 2L_6887151_SNP [dm6]	A	C	5.343e^-4	0.986	INTRON Nlg2
3L	9020213	3L_9020213_SNP [dm3] 3L_9027113_SNP [dm6]	C	T	5.344e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13626029	3R_13626029_SNP [dm3] 3R_17800307_SNP [dm6]	C	G	5.355e^-4	0.986	NON_SYNONYMOUS_CODING CG17803
X	19282276	X_19282276_SNP [dm3] X_19388243_SNP [dm6]	A	C	5.378e^-4	0.986	INTRON kek5
X	20318450	X_20318450_SNP [dm3] X_20447423_SNP [dm6]	T	A	5.382e^-4	0.986	DOWNSTREAM CG42578 INTERGENIC
X	14133567	X_14133567_SNP [dm3] X_14239534_SNP [dm6]	T	A	5.388e^-4	0.986	NON_SYNONYMOUS_CODING CG1434 DOWNSTREAM mRNA-cap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	5115095	X_5115095_MNP [dm3] X_5221062_MNP [dm6]	ATT	TAA	5.407e^-4	0.986	INTRON CG15465 & 1 other
X	9587732	X_9587732_DEL [dm3] X_9693699_DEL [dm6]	AGCACTA	A	5.407e^-4	0.986	UPSTREAM btd INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25797820	3R_25797820_SNP [dm3] 3R_29972098_SNP [dm6]	G	A	5.407e^-4	0.986	INTERGENIC
3R	11618058	3R_11618058_SNP [dm3] 3R_15792336_SNP [dm6]	G	T	5.407e^-4	0.986	NON_SYNONYMOUS_CODING c_3_G UPSTREAM Acyp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	24804745	3R_24804745_SNP [dm3] 3R_28979023_SNP [dm6]	G	A	5.416e^-4	0.986	INTERGENIC
3L	9193706	3L_9193706_SNP [dm3] 3L_9200606_SNP [dm6]	A	G	5.420e^-4	0.986	INTERGENIC
2L	1279311	2L_1279311_SNP [dm3] 2L_1279311_SNP [dm6]	T	C	5.438e^-4	0.986	INTRON robo3
2R	9172415	2R_9172415_SNP [dm3] 2R_13284910_SNP [dm6]	G	A	5.440e^-4	0.986	INTRON Dh31-R
2L	4521032	2L_4521032_SNP [dm3] 2L_4521032_SNP [dm6]	A	G	5.459e^-4	0.986	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18213027	X_18213027_SNP [dm3] X_18318994_SNP [dm6]	T	G	5.459e^-4	0.986	INTRON CG6023
3R	24279717	3R_24279717_SNP [dm3] 3R_28453995_SNP [dm6]	A	T	5.463e^-4	0.986	INTRON beat-VI
2L	6551676	2L_6551676_SNP [dm3] 2L_6551676_SNP [dm6]	T	A	5.485e^-4	0.986	UPSTREAM CR44776 INTERGENIC
3L	1572735	3L_1572735_SNP [dm3] 3L_1572735_SNP [dm6]	T	C	5.497e^-4	0.986	SYNONYMOUS_CODING CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10510194	2R_10510194_SNP [dm3] 2R_14622689_SNP [dm6]	A	G	5.500e^-4	0.986	UPSTREAM snoRNA:Me18S-G1952 & 3 others DOWNSTREAM snoRNA:Me18S-C1366 & 3 others INTRON Uhg5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	26718585	3R_26718585_SNP [dm3] 3R_30892863_SNP [dm6]	C	G	5.502e^-4	0.986	INTERGENIC
X	9450178	X_9450178_SNP [dm3] X_9556145_SNP [dm6]	A	G	5.523e^-4	0.986	DOWNSTREAM RpS28b INTRON CG15317	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18725178	2R_18725178_SNP [dm3] 2R_22837655_SNP [dm6]	C	T	5.544e^-4	0.986	DOWNSTREAM CG12490 INTRON CG9825
3R	26119143	3R_26119143_SNP [dm3] 3R_30293421_SNP [dm6]	A	G	5.549e^-4	0.986	INTRON hdc	TF binding site BDTNP1_TFBS_dl
2R	11471554	2R_11471554_SNP [dm3] 2R_15584049_SNP [dm6]	C	A	5.549e^-4	0.986	INTERGENIC
3L	10286174	3L_10286174_SNP [dm3] 3L_10293074_SNP [dm6]	A	C	5.549e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15201608	2R_15201608_SNP [dm3] 2R_19314103_SNP [dm6]	A	T	5.556e^-4	0.986	INTRON Rgk1	TF binding site BDTNP1_TFBS_twi
2R	17102205	2R_17102205_SNP [dm3] 2R_21214700_SNP [dm6]	A	G	5.556e^-4	0.986	DOWNSTREAM CG15661 INTRON CG4302
2R	17102221	2R_17102221_SNP [dm3] 2R_21214716_SNP [dm6]	T	C	5.556e^-4	0.986	DOWNSTREAM CG15661 INTRON CG4302
2R	17102222	2R_17102222_SNP [dm3] 2R_21214717_SNP [dm6]	C	T	5.556e^-4	0.986	DOWNSTREAM CG15661 INTRON CG4302
2R	18071531	2R_18071531_SNP [dm3] 2R_22184026_SNP [dm6]	G	A	5.556e^-4	0.986	SYNONYMOUS_CODING MED16	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19089288	3R_19089288_SNP [dm3] 3R_23263566_SNP [dm6]	A	T	5.556e^-4	0.986	UTR_3_PRIME orb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24393323	3R_24393323_SNP [dm3] 3R_28567601_SNP [dm6]	C	T	5.562e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24393333	3R_24393333_SNP [dm3] 3R_28567611_SNP [dm6]	A	G	5.562e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24393396	3R_24393396_SNP [dm3] 3R_28567674_SNP [dm6]	T	A	5.562e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24393398	3R_24393398_SNP [dm3] 3R_28567676_SNP [dm6]	C	T	5.562e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24393449	3R_24393449_SNP [dm3] 3R_28567727_SNP [dm6]	A	T	5.562e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24393474	3R_24393474_SNP [dm3] 3R_28567752_SNP [dm6]	A	C	5.562e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24393491	3R_24393491_SNP [dm3] 3R_28567769_SNP [dm6]	C	T	5.562e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6898496	2L_6898496_INS [dm3] 2L_6898496_INS [dm6]	A	AGATGGGA	5.573e^-4	0.986	INTRON Nlg2
X	14382798	X_14382798_SNP [dm3] X_14488765_SNP [dm6]	A	G	5.574e^-4	0.986	INTERGENIC
3L	17928418	3L_17928418_SNP [dm3] 3L_17935318_SNP [dm6]	C	T	5.582e^-4	0.986	SYNONYMOUS_CODING CG43173 INTRON CG43174
2R	9168209	2R_9168209_SNP [dm3] 2R_13280704_SNP [dm6]	G	C	5.593e^-4	0.986	INTRON Dh31-R
3R	25015666	3R_25015666_SNP [dm3] 3R_29189944_SNP [dm6]	T	G	5.636e^-4	0.986	INTRON CG14509
2R	15566523	2R_15566523_SNP [dm3] 2R_19679018_SNP [dm6]	G	T	5.680e^-4	0.986	INTERGENIC
2L	5760144	2L_5760144_SNP [dm3] 2L_5760144_SNP [dm6]	C	A	5.683e^-4	0.986	UTR_3_PRIME CG11030 DOWNSTREAM CG11030
2R	6393440	2R_6393440_SNP [dm3] 2R_10505935_SNP [dm6]	G	A	5.693e^-4	0.986	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	9196495	3R_9196495_SNP [dm3] 3R_13370773_SNP [dm6]	A	G	5.705e^-4	0.986	DOWNSTREAM CheA87a INTRON Lip3
2L	3628428	2L_3628428_SNP [dm3] 2L_3628428_SNP [dm6]	G	T	5.736e^-4	0.986	INTRON for	TF binding site BDTNP1_TFBS_twi
X	14339118	X_14339118_SNP [dm3] X_14445085_SNP [dm6]	A	G	5.737e^-4	0.986	INTRON dpr8
X	919897	X_919897_SNP [dm3] X_1025864_SNP [dm6]	A	G	5.754e^-4	0.986	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site mE1_TFBS_HSA
2R	16579016	2R_16579016_SNP [dm3] 2R_20691511_SNP [dm6]	G	A	5.767e^-4	0.986	UPSTREAM CR44659 INTERGENIC
3R	19308043	3R_19308043_SNP [dm3] 3R_23482321_SNP [dm6]	T	C	5.770e^-4	0.986	SYNONYMOUS_CODING Ir94f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19308079	3R_19308079_SNP [dm3] 3R_23482357_SNP [dm6]	C	A	5.770e^-4	0.986	NON_SYNONYMOUS_CODING Ir94f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2870375	X_2870375_SNP [dm3] X_2976342_SNP [dm6]	G	C	5.772e^-4	0.986	INTRON kirre
X	9398828	X_9398828_DEL [dm3] X_9504795_DEL [dm6]	GGT	A	5.778e^-4	0.986	UTR_3_PRIME CG32700
3L	16891960	3L_16891960_SNP [dm3] 3L_16898860_SNP [dm6]	T	C	5.787e^-4	0.986	UPSTREAM Lmpt INTRON Lmpt
2L	14365411	2L_14365411_SNP [dm3] 2L_14365411_SNP [dm6]	T	G	5.798e^-4	0.986	UTR_3_PRIME spel1 INTRON spel1
X	18249638	X_18249638_DEL [dm3] X_18355605_DEL [dm6]	CTGCC	C	5.822e^-4	0.986	INTRON CG6123
3R	26974166	3R_26974166_SNP [dm3] 3R_31148444_SNP [dm6]	A	G	5.826e^-4	0.986	INTRON Gycbeta100B
X	5806121	X_5806121_SNP [dm3] X_5912088_SNP [dm6]	C	T	5.835e^-4	0.986	DOWNSTREAM CG12236 & 1 other INTRON CG12236	TF binding site mE1_TFBS_Trl
3R	22847357	3R_22847357_SNP [dm3] 3R_27021635_SNP [dm6]	T	G	5.846e^-4	0.986	UPSTREAM CG6283 DOWNSTREAM CG6277 INTRON RYa-R
X	4087570	X_4087570_SNP [dm3] X_4193537_SNP [dm6]	G	A	5.852e^-4	0.986	INTRON Fas2	regulatory region REDfly_CRMs
3R	25024464	3R_25024464_SNP [dm3] 3R_29198742_SNP [dm6]	C	A	5.854e^-4	0.986	INTRON CG14515
2L	15324379	2L_15324379_SNP [dm3] 2L_15324379_SNP [dm6]	A	C	5.855e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	15324387	2L_15324387_SNP [dm3] 2L_15324387_SNP [dm6]	G	A	5.855e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	17378537	2L_17378537_INS [dm3] 2L_17378537_INS [dm6]	T	TATGT	5.856e^-4	0.986	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2010732	2L_2010732_SNP [dm3] 2L_2010732_SNP [dm6]	A	T	5.865e^-4	0.986	UPSTREAM CG4238 & 1 other DOWNSTREAM tRNA:CR31940 INTRON CG4238	TF binding site BDTNP1_TFBS_dl
2L	12448383	2L_12448383_DEL [dm3] 2L_12448383_DEL [dm6]	GAAAAAAG	G	5.870e^-4	0.986	UPSTREAM Oatp33Eb & 1 other INTERGENIC
3L	15792787	3L_15792787_SNP [dm3] 3L_15799687_SNP [dm6]	T	G	5.870e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6539469	2R_6539469_SNP [dm3] 2R_10651964_SNP [dm6]	G	T	5.870e^-4	0.986	INTERGENIC
2R	19814402	2R_19814402_SNP [dm3] 2R_23926879_SNP [dm6]	G	A	5.887e^-4	0.986	UTR_3_PRIME Ca-P60A & 1 other DOWNSTREAM Ca-P60A	TF binding site mE1_TFBS_cad
3L	19413614	3L_19413614_SNP [dm3] 3L_19420514_SNP [dm6]	A	G	5.911e^-4	0.986	INTERGENIC
2L	10247933	2L_10247933_SNP [dm3] 2L_10247933_SNP [dm6]	A	G	5.913e^-4	0.986	SYNONYMOUS_CODING bsk UPSTREAM chico
3R	15458725	3R_15458725_SNP [dm3] 3R_19633003_SNP [dm6]	T	C	5.928e^-4	0.986	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1855024	2L_1855024_SNP [dm3] 2L_1855024_SNP [dm6]	G	T	5.929e^-4	0.986	INTRON wry	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3901582	2L_3901582_SNP [dm3] 2L_3901582_SNP [dm6]	T	C	5.929e^-4	0.986	INTRON capu
2L	4132503	2L_4132503_SNP [dm3] 2L_4132503_SNP [dm6]	G	T	5.929e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12442709	2R_12442709_SNP [dm3] 2R_16555204_SNP [dm6]	G	A	5.929e^-4	0.986	SYNONYMOUS_CODING Syn2
3L	19997154	3L_19997154_SNP [dm3] 3L_20004054_SNP [dm6]	C	T	5.929e^-4	0.986	NON_SYNONYMOUS_CODING CG7668	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	19998318	3L_19998318_SNP [dm3] 3L_20005218_SNP [dm6]	C	T	5.929e^-4	0.986	UPSTREAM kug DOWNSTREAM CG7668 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	20000093	3L_20000093_SNP [dm3] 3L_20006993_SNP [dm6]	G	T	5.929e^-4	0.986	INTRON kug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18167777	3R_18167777_SNP [dm3] 3R_22342055_SNP [dm6]	G	T	5.929e^-4	0.986	INTRON CG5386	TF binding site mE1_TFBS_inv
3R	18506002	3R_18506002_SNP [dm3] 3R_22680280_SNP [dm6]	G	A	5.929e^-4	0.986	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23947828	3R_23947828_SNP [dm3] 3R_28122106_SNP [dm6]	G	A	5.929e^-4	0.986	INTERGENIC
3R	25156272	3R_25156272_SNP [dm3] 3R_29330550_SNP [dm6]	G	A	5.929e^-4	0.986	INTERGENIC
X	7571178	X_7571178_SNP [dm3] X_7677145_SNP [dm6]	C	T	5.929e^-4	0.986	UTR_3_PRIME ct
2R	18607949	2R_18607949_SNP [dm3] 2R_22720444_SNP [dm6]	A	G	5.932e^-4	0.986	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18581683	3R_18581683_SNP [dm3] 3R_22755961_SNP [dm6]	C	T	5.937e^-4	0.986	INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_Trl
3R	16585441	3R_16585441_SNP [dm3] 3R_20759719_SNP [dm6]	A	T	5.946e^-4	0.986	SYNONYMOUS_CODING CG31195 INTRON Syp
3R	9197243	3R_9197243_SNP [dm3] 3R_13371521_SNP [dm6]	T	G	5.949e^-4	0.986	INTRON Lip3
2L	8644251	2L_8644251_SNP [dm3] 2L_8644251_SNP [dm6]	G	A	5.953e^-4	0.986	INTRON Sema-1a
2L	8644264	2L_8644264_SNP [dm3] 2L_8644264_SNP [dm6]	G	C	5.953e^-4	0.986	INTRON Sema-1a
2R	1746678	2R_1746678_SNP [dm3] 2R_5859173_SNP [dm6]	T	C	5.953e^-4	0.986	UTR_3_PRIME dpr12
3R	18600114	3R_18600114_SNP [dm3] 3R_22774392_SNP [dm6]	A	C	5.953e^-4	0.986	DOWNSTREAM mir-4953 INTRON Usp12-46 & 1 other
3R	5266047	3R_5266047_SNP [dm3] 3R_9440325_SNP [dm6]	C	A	5.953e^-4	0.986	INTRON ps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16891998	3R_16891998_SNP [dm3] 3R_21066276_SNP [dm6]	T	A	5.956e^-4	0.986	INTRON AnxB9	TF binding site mE1_TFBS_Trl
2R	16115203	2R_16115203_SNP [dm3] 2R_20227698_SNP [dm6]	T	A	5.971e^-4	0.986	INTERGENIC
2R	9172447	2R_9172447_SNP [dm3] 2R_13284942_SNP [dm6]	T	C	5.976e^-4	0.986	INTRON Dh31-R
2R	9172450	2R_9172450_SNP [dm3] 2R_13284945_SNP [dm6]	A	G	5.976e^-4	0.986	INTRON Dh31-R
2R	9172455	2R_9172455_SNP [dm3] 2R_13284950_SNP [dm6]	T	A	5.976e^-4	0.986	INTRON Dh31-R
2L	19926200	2L_19926200_SNP [dm3] 2L_19926200_SNP [dm6]	A	T	5.983e^-4	0.986	INTRON sick	TF binding site mE1_TFBS_chinmo
3R	19456936	3R_19456936_SNP [dm3] 3R_23631214_SNP [dm6]	A	G	5.983e^-4	0.986	INTRON CG31145	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24165890	3R_24165890_SNP [dm3] 3R_28340168_SNP [dm6]	G	T	5.983e^-4	0.986	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24165891	3R_24165891_SNP [dm3] 3R_28340169_SNP [dm6]	G	A	5.983e^-4	0.986	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16471714	2L_16471714_SNP [dm3] 2L_16471714_SNP [dm6]	G	T	5.985e^-4	0.986	INTRON dac
X	2870364	X_2870364_SNP [dm3] X_2976331_SNP [dm6]	C	A	6.002e^-4	0.986	INTRON kirre
2L	6070171	2L_6070171_SNP [dm3] 2L_6070171_SNP [dm6]	T	G	6.011e^-4	0.986	SYNONYMOUS_CODING CG9154 UPSTREAM Kr-h2 DOWNSTREAM CG13993	TF binding site mE1_TFBS_sens
3L	19419831	3L_19419831_SNP [dm3] 3L_19426731_SNP [dm6]	G	A	6.022e^-4	0.986	INTERGENIC
X	2705403	X_2705403_SNP [dm3] X_2811370_SNP [dm6]	A	G	6.044e^-4	0.986	DOWNSTREAM CG12498 INTRON kirre
X	4747172	X_4747172_DEL [dm3] X_4853139_DEL [dm6]	AGA	A	6.058e^-4	0.986	INTRON CG42594	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4469087	2L_4469087_SNP [dm3] 2L_4469087_SNP [dm6]	C	A	6.064e^-4	0.986	SYNONYMOUS_CODING ine	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24331273	3R_24331273_MNP [dm3] 3R_28505551_MNP [dm6]	AAA	CCG	6.076e^-4	0.986	INTRON Dhc98D
3R	24331279	3R_24331279_MNP [dm3] 3R_28505557_MNP [dm6]	TTT	GGC	6.076e^-4	0.986	INTRON Dhc98D
2L	3046926	2L_3046926_SNP [dm3] 2L_3046926_SNP [dm6]	A	T	6.081e^-4	0.986	DOWNSTREAM CR43708 INTRON v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13650043	3L_13650043_SNP [dm3] 3L_13656943_SNP [dm6]	T	C	6.082e^-4	0.986	INTRON bru-3	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13643177	X_13643177_SNP [dm3] X_13749144_SNP [dm6]	A	G	6.090e^-4	0.986	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20466188	2L_20466188_SNP [dm3] 2L_20466188_SNP [dm6]	T	C	6.090e^-4	0.986	INTRON CR44980
3R	25115999	3R_25115999_SNP [dm3] 3R_29290277_SNP [dm6]	A	C	6.092e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	19010481	2R_19010481_SNP [dm3] 2R_23122958_SNP [dm6]	T	A	6.112e^-4	0.986	DOWNSTREAM Klp59C INTERGENIC
X	5694715	X_5694715_SNP [dm3] X_5800682_SNP [dm6]	T	G	6.126e^-4	0.986	INTERGENIC
3R	14423644	3R_14423644_SNP [dm3] 3R_18597922_SNP [dm6]	G	C	6.136e^-4	0.986	UPSTREAM CG14305 INTRON qin & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	763957	2L_763957_INS [dm3] 2L_763957_INS [dm6]	C	CAC	6.138e^-4	0.986	INTERGENIC
2R	14621502	2R_14621502_SNP [dm3] 2R_18733997_SNP [dm6]	G	A	6.146e^-4	0.986	INTRON Hs3st-A
2R	18607745	2R_18607745_SNP [dm3] 2R_22720240_SNP [dm6]	A	C	6.146e^-4	0.986	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16470628	3L_16470628_SNP [dm3] 3L_16477528_SNP [dm6]	T	C	6.147e^-4	0.986	INTRON CG33158 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4949240	2R_4949240_SNP [dm3] 2R_9061735_SNP [dm6]	G	T	6.152e^-4	0.986	SYNONYMOUS_CODING CG8197 UPSTREAM ana	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6907110	2L_6907110_SNP [dm3] 2L_6907110_SNP [dm6]	A	G	6.158e^-4	0.986	SYNONYMOUS_CODING CG13773 UPSTREAM Rat1 DOWNSTREAM Nlg2
2L	13625197	2L_13625197_SNP [dm3] 2L_13625197_SNP [dm6]	C	A	6.159e^-4	0.986	INTRON kuz
3L	7909123	3L_7909123_SNP [dm3] 3L_7916023_SNP [dm6]	G	C	6.165e^-4	0.986	UPSTREAM CG8111 DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12583235	2R_12583235_SNP [dm3] 2R_16695730_SNP [dm6]	C	A	6.176e^-4	0.986	INTRON CG30463
3L	11791879	3L_11791879_SNP [dm3] 3L_11798779_SNP [dm6]	C	T	6.183e^-4	0.986	UTR_3_PRIME Klp68D DOWNSTREAM CG10361
3R	24314637	3R_24314637_SNP [dm3] 3R_28488915_SNP [dm6]	T	C	6.183e^-4	0.986	INTRON Dhc98D
2L	14368002	2L_14368002_SNP [dm3] 2L_14368002_SNP [dm6]	T	A	6.198e^-4	0.986	INTERGENIC
3L	14911328	3L_14911328_SNP [dm3] 3L_14918228_SNP [dm6]	T	G	6.204e^-4	0.986	INTRON DCX-EMAP
3L	7088793	3L_7088793_INS [dm3] 3L_7095693_INS [dm6]	A	AATAAA	6.204e^-4	0.986	INTRON form3	TF binding site BDTNP1_TFBS_da
3L	7088811	3L_7088811_SNP [dm3] 3L_7095711_SNP [dm6]	A	T	6.204e^-4	0.986	INTRON form3	TF binding site BDTNP1_TFBS_da
X	12587540	X_12587540_SNP [dm3] X_12693507_SNP [dm6]	T	A	6.207e^-4	0.986	INTRON Smr	TF binding site mE1_TFBS_inv
3R	27015272	3R_27015272_SNP [dm3] 3R_31189550_SNP [dm6]	G	A	6.216e^-4	0.986	INTRON mesh
3R	26936492	3R_26936492_SNP [dm3] 3R_31110770_SNP [dm6]	A	T	6.227e^-4	0.986	INTERGENIC
2L	15632264	2L_15632264_DEL [dm3] 2L_15632264_DEL [dm6]	CATCAAC	C	6.250e^-4	0.986	UTR_3_PRIME CG18480
3R	23919006	3R_23919006_SNP [dm3] 3R_28093284_SNP [dm6]	T	C	6.254e^-4	0.986	INTERGENIC
3R	15976709	3R_15976709_SNP [dm3] 3R_20150987_SNP [dm6]	C	A	6.278e^-4	0.986	INTERGENIC
3R	15976743	3R_15976743_SNP [dm3] 3R_20151021_SNP [dm6]	T	C	6.278e^-4	0.986	INTERGENIC
3R	15976754	3R_15976754_SNP [dm3] 3R_20151032_SNP [dm6]	C	T	6.278e^-4	0.986	INTERGENIC
2L	19343524	2L_19343524_SNP [dm3] 2L_19343524_SNP [dm6]	T	G	6.282e^-4	0.986	INTRON dnt
3R	26857036	3R_26857036_SNP [dm3] 3R_31031314_SNP [dm6]	G	T	6.284e^-4	0.986	INTERGENIC
X	13980854	X_13980854_SNP [dm3] X_14086821_SNP [dm6]	C	T	6.290e^-4	0.986	INTERGENIC
X	12953328	X_12953328_SNP [dm3] X_13059295_SNP [dm6]	T	A	6.318e^-4	0.986	INTRON rad
2L	19825513	2L_19825513_DEL [dm3] 2L_19825513_DEL [dm6]	TT	T	6.324e^-4	0.986	UPSTREAM sick INTRON sick
2L	19825522	2L_19825522_SNP [dm3] 2L_19825522_SNP [dm6]	C	T	6.324e^-4	0.986	UPSTREAM sick INTRON sick
2L	19825562	2L_19825562_SNP [dm3] 2L_19825562_SNP [dm6]	A	C	6.324e^-4	0.986	UPSTREAM sick INTRON sick
3R	25437324	3R_25437324_SNP [dm3] 3R_29611602_SNP [dm6]	C	T	6.328e^-4	0.986	INTRON alph
3L	5937088	3L_5937088_INS [dm3] 3L_5943988_INS [dm6]	C	CG	6.329e^-4	0.986	INTRON CG33993
2L	6907139	2L_6907139_SNP [dm3] 2L_6907139_SNP [dm6]	G	A	6.335e^-4	0.986	UPSTREAM Rat1 DOWNSTREAM Nlg2 INTRON CG13773
3R	25824001	3R_25824001_SNP [dm3] 3R_29998279_SNP [dm6]	A	C	6.339e^-4	0.986	UTR_5_PRIME CG11504 UPSTREAM CG15525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4049154	3L_4049154_SNP [dm3] 3L_4049154_SNP [dm6]	A	C	6.340e^-4	0.986	INTRON CG1136
3L	4049196	3L_4049196_SNP [dm3] 3L_4049196_SNP [dm6]	C	T	6.340e^-4	0.986	INTRON CG1136
3L	2581218	3L_2581218_SNP [dm3] 3L_2581218_SNP [dm6]	A	G	6.342e^-4	0.986	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17524798	2L_17524798_SNP [dm3] 2L_17524798_SNP [dm6]	A	G	6.342e^-4	0.986	SYNONYMOUS_CODING Dhc36C UPSTREAM CG15143 DOWNSTREAM CG15144
2R	11643573	2R_11643573_SNP [dm3] 2R_15756068_SNP [dm6]	C	G	6.349e^-4	0.986	SYNONYMOUS_CODING CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12572932	2R_12572932_SNP [dm3] 2R_16685427_SNP [dm6]	C	T	6.370e^-4	0.986	INTRON CG30463	TF binding site mE1_TFBS_HSA
2L	4424709	2L_4424709_SNP [dm3] 2L_4424709_SNP [dm6]	A	T	6.372e^-4	0.986	INTRON CG15431
2R	13493017	2R_13493017_SNP [dm3] 2R_17605512_SNP [dm6]	G	A	6.379e^-4	0.986	SYNONYMOUS_CODING CG10936 UPSTREAM tRNA:CR30333 DOWNSTREAM tRNA:CR30231
3L	15469855	3L_15469855_SNP [dm3] 3L_15476755_SNP [dm6]	T	A	6.390e^-4	0.986	INTERGENIC
X	20865778	X_20865778_SNP [dm3] X_20994751_SNP [dm6]	T	C	6.394e^-4	0.986	INTERGENIC
3R	16704630	3R_16704630_SNP [dm3] 3R_20878908_SNP [dm6]	C	T	6.429e^-4	0.986	DOWNSTREAM TotZ EXON CR44048
3L	2617337	3L_2617337_DEL [dm3] 3L_2617337_DEL [dm6]	AGCTTTCAGCTTCA...	A	6.474e^-4	0.986	INTRON Pxn	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	26957190	3R_26957190_SNP [dm3] 3R_31131468_SNP [dm6]	T	C	6.483e^-4	0.986	UPSTREAM CG15556 & 1 other INTERGENIC
2R	11592770	2R_11592770_SNP [dm3] 2R_15705265_SNP [dm6]	T	C	6.483e^-4	0.986	INTERGENIC
2L	14068919	2L_14068919_SNP [dm3] 2L_14068919_SNP [dm6]	C	T	6.491e^-4	0.986	SYNONYMOUS_CODING nAChRalpha5
2R	18136400	2R_18136400_DEL [dm3] 2R_22248895_DEL [dm6]	TGGGTATGCCGTCTGGAATC...	T	6.516e^-4	0.986	INTRON dve	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	3188490	3L_3188490_SNP [dm3] 3L_3188490_SNP [dm6]	G	A	6.517e^-4	0.986	SYNONYMOUS_CODING CG42525 DOWNSTREAM CG14957	TF binding site mE1_TFBS_sens
3R	16738916	3R_16738916_SNP [dm3] 3R_20913194_SNP [dm6]	A	T	6.539e^-4	0.986	UPSTREAM snoRNA:CG31191-a DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5303793	2L_5303793_SNP [dm3] 2L_5303793_SNP [dm6]	G	A	6.553e^-4	0.986	INTRON vri
2L	5303796	2L_5303796_SNP [dm3] 2L_5303796_SNP [dm6]	T	C	6.553e^-4	0.986	INTRON vri
3R	24289893	3R_24289893_SNP [dm3] 3R_28464171_SNP [dm6]	T	C	6.570e^-4	0.986	SYNONYMOUS_CODING beat-VI
2L	12200176	2L_12200176_SNP [dm3] 2L_12200176_SNP [dm6]	G	T	6.574e^-4	0.986	INTRON aret
2R	17422519	2R_17422519_SNP [dm3] 2R_21535014_SNP [dm6]	A	G	6.593e^-4	0.986	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	12644266	3R_12644266_INS [dm3] 3R_16818544_INS [dm6]	G	GCAAG	6.593e^-4	0.986	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19766514	X_19766514_SNP [dm3] X_19872481_SNP [dm6]	C	T	6.593e^-4	0.986	INTRON Hers	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7461612	2L_7461612_SNP [dm3] 2L_7461612_SNP [dm6]	T	C	6.619e^-4	0.986	SYNONYMOUS_CODING Gr28b UPSTREAM Gr28b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1299167	2L_1299167_SNP [dm3] 2L_1299167_SNP [dm6]	A	C	6.620e^-4	0.986	INTERGENIC
X	4981282	X_4981282_INS [dm3] X_5087249_INS [dm6]	G	GAATGG	6.642e^-4	0.986	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_Trl
3R	15458716	3R_15458716_SNP [dm3] 3R_19632994_SNP [dm6]	T	A	6.644e^-4	0.986	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11791981	3L_11791981_SNP [dm3] 3L_11798881_SNP [dm6]	C	G	6.651e^-4	0.986	DOWNSTREAM CG10361 & 1 other INTERGENIC
X	12895282	X_12895282_SNP [dm3] X_13001249_SNP [dm6]	A	G	6.667e^-4	0.986	INTRON rad
3L	4832962	3L_4832962_SNP [dm3] 3L_4832962_SNP [dm6]	A	G	6.667e^-4	0.986	NON_SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10986151	2L_10986151_SNP [dm3] 2L_10986151_SNP [dm6]	G	T	6.675e^-4	0.986	INTRON piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	12642564	3R_12642564_SNP [dm3] 3R_16816842_SNP [dm6]	C	T	6.704e^-4	0.986	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2L	19829357	2L_19829357_SNP [dm3] 2L_19829357_SNP [dm6]	C	T	6.721e^-4	0.986	INTRON sick
2R	11306297	2R_11306297_SNP [dm3] 2R_15418792_SNP [dm6]	C	G	6.743e^-4	0.986	INTRON CG43729
X	11652072	X_11652072_SNP [dm3] X_11758039_SNP [dm6]	T	G	6.744e^-4	0.986	INTRON m
X	14298340	X_14298340_SNP [dm3] X_14404307_SNP [dm6]	C	A	6.749e^-4	0.986	INTRON dpr8
2R	15566572	2R_15566572_SNP [dm3] 2R_19679067_SNP [dm6]	G	T	6.777e^-4	0.986	INTERGENIC
2R	2400763	2R_2400763_SNP [dm3] 2R_6513258_SNP [dm6]	A	G	6.780e^-4	0.986	INTRON jing	TF binding site BDTNP1_TFBS_dl
2L	1050940	2L_1050940_SNP [dm3] 2L_1050940_SNP [dm6]	G	T	6.815e^-4	0.986	UTR_3_PRIME S DOWNSTREAM S
2L	1050942	2L_1050942_SNP [dm3] 2L_1050942_SNP [dm6]	A	T	6.815e^-4	0.986	UTR_3_PRIME S DOWNSTREAM S
3L	16675000	3L_16675000_INS [dm3] 3L_16681900_INS [dm6]	A	AAA	6.824e^-4	0.986	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi
2R	15264252	2R_15264252_INS [dm3] 2R_19376747_INS [dm6]	G	GTCAGTTCGGTG...	6.827e^-4	0.986	UTR_5_PRIME CG10062 INTRON CG10062
X	11652100	X_11652100_SNP [dm3] X_11758067_SNP [dm6]	A	C	6.830e^-4	0.986	INTRON m
2R	11038832	2R_11038832_SNP [dm3] 2R_15151327_SNP [dm6]	A	G	6.851e^-4	0.986	INTERGENIC
2R	15539805	2R_15539805_SNP [dm3] 2R_19652300_SNP [dm6]	G	A	6.851e^-4	0.986	UPSTREAM CR44213 DOWNSTREAM CR44212 EXON Ir56e
3L	18729249	3L_18729249_SNP [dm3] 3L_18736149_SNP [dm6]	T	G	6.870e^-4	0.986	INTERGENIC
2L	14368207	2L_14368207_SNP [dm3] 2L_14368207_SNP [dm6]	C	T	6.878e^-4	0.986	INTERGENIC
3R	10312363	3R_10312363_SNP [dm3] 3R_14486641_SNP [dm6]	T	A	6.894e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8622612	2R_8622612_SNP [dm3] 2R_12735107_SNP [dm6]	C	T	6.906e^-4	0.986	SYNONYMOUS_CODING CG42663
2R	15565625	2R_15565625_SNP [dm3] 2R_19678120_SNP [dm6]	A	G	6.908e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15565629	2R_15565629_SNP [dm3] 2R_19678124_SNP [dm6]	G	A	6.908e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	14915726	2L_14915726_SNP [dm3] 2L_14915726_SNP [dm6]	C	A	6.911e^-4	0.986	INTRON CG42313
X	12684750	X_12684750_SNP [dm3] X_12790717_SNP [dm6]	T	A	6.916e^-4	0.986	UTR_3_PRIME Pde9 DOWNSTREAM Pde9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12684760	X_12684760_SNP [dm3] X_12790727_SNP [dm6]	C	T	6.916e^-4	0.986	UTR_3_PRIME Pde9 DOWNSTREAM Pde9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12684769	X_12684769_SNP [dm3] X_12790736_SNP [dm6]	T	G	6.916e^-4	0.986	UTR_3_PRIME Pde9 DOWNSTREAM Pde9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12684910	X_12684910_SNP [dm3] X_12790877_SNP [dm6]	A	G	6.916e^-4	0.986	UTR_3_PRIME Pde9 DOWNSTREAM Pde9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1256178	3L_1256178_SNP [dm3] 3L_1256178_SNP [dm6]	A	T	6.921e^-4	0.986	UPSTREAM CG9134 DOWNSTREAM CG9130 & 1 other INTERGENIC
3R	17978331	3R_17978331_SNP [dm3] 3R_22152609_SNP [dm6]	C	A	6.932e^-4	0.986	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	5935840	3L_5935840_SNP [dm3] 3L_5942740_SNP [dm6]	C	G	6.939e^-4	0.986	INTRON CG33993
3L	5935846	3L_5935846_DEL [dm3] 3L_5942746_DEL [dm6]	ATAGC	A	6.939e^-4	0.986	INTRON CG33993
3R	25526883	3R_25526883_SNP [dm3] 3R_29701161_SNP [dm6]	A	T	6.941e^-4	0.986	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	25526886	3R_25526886_SNP [dm3] 3R_29701164_SNP [dm6]	G	T	6.941e^-4	0.986	INTERGENIC	enhancer mE1_CBP_Enhancers
3R	25526896	3R_25526896_SNP [dm3] 3R_29701174_SNP [dm6]	G	T	6.941e^-4	0.986	INTERGENIC	enhancer mE1_CBP_Enhancers
X	12951204	X_12951204_SNP [dm3] X_13057171_SNP [dm6]	T	C	6.943e^-4	0.986	INTRON rad
3R	23739239	3R_23739239_SNP [dm3] 3R_27913517_SNP [dm6]	T	C	6.947e^-4	0.986	SYNONYMOUS_CODING hanabi DOWNSTREAM CG5003
3R	23919047	3R_23919047_SNP [dm3] 3R_28093325_SNP [dm6]	A	C	6.984e^-4	0.986	INTERGENIC
2L	14555179	2L_14555179_DEL [dm3] 2L_14555179_DEL [dm6]	ATGTCCACACTGTTTTTCCC...	A	6.985e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
X	13980572	X_13980572_SNP [dm3] X_14086539_SNP [dm6]	G	C	6.993e^-4	0.986	INTERGENIC
2R	17560463	2R_17560463_SNP [dm3] 2R_21672958_SNP [dm6]	T	A	6.994e^-4	0.986	DOWNSTREAM CG15676 INTERGENIC
2R	8594607	2R_8594607_INS [dm3] 2R_12707102_INS [dm6]	C	CTCCC	7.002e^-4	0.986	INTRON CG42663
2L	20241398	2L_20241398_SNP [dm3] 2L_20241398_SNP [dm6]	G	T	7.020e^-4	0.986	INTERGENIC
2R	11472336	2R_11472336_SNP [dm3] 2R_15584831_SNP [dm6]	T	C	7.024e^-4	0.986	INTERGENIC
X	16566287	X_16566287_SNP [dm3] X_16672254_SNP [dm6]	C	T	7.025e^-4	0.986	INTRON CG13012
2L	8328476	2L_8328476_DEL [dm3] 2L_8328476_DEL [dm6]	ATGGC	A	7.033e^-4	0.986	UPSTREAM CG14275 INTRON CG14275
2R	9266424	2R_9266424_SNP [dm3] 2R_13378919_SNP [dm6]	A	T	7.052e^-4	0.986	INTERGENIC
2R	11517472	2R_11517472_INS [dm3] 2R_15629967_INS [dm6]	C	CCCC	7.057e^-4	0.986	INTRON CG42524
2L	14381471	2L_14381471_DEL [dm3] 2L_14381471_DEL [dm6]	TACATTT	T	7.061e^-4	0.986	UPSTREAM ppk INTERGENIC
2L	4333472	2L_4333472_SNP [dm3] 2L_4333472_SNP [dm6]	T	C	7.074e^-4	0.986	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13969488	2L_13969488_SNP [dm3] 2L_13969488_SNP [dm6]	C	T	7.099e^-4	0.986	UPSTREAM NimB5 INTRON NimB4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2578856	3L_2578856_SNP [dm3] 3L_2578856_SNP [dm6]	C	A	7.110e^-4	0.986	INTRON msn	TF binding site BDTNP1_TFBS_twi
3L	15870077	3L_15870077_SNP [dm3] 3L_15876977_SNP [dm6]	A	C	7.132e^-4	0.986	UPSTREAM CR44051 INTRON pHCl
2L	1312803	2L_1312803_SNP [dm3] 2L_1312803_SNP [dm6]	G	T	7.135e^-4	0.986	INTERGENIC
X	20533816	X_20533816_SNP [dm3] X_20662789_SNP [dm6]	T	A	7.141e^-4	0.986	INTRON CG1835	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14153724	3L_14153724_SNP [dm3] 3L_14160624_SNP [dm6]	T	A	7.141e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
3R	18350246	3R_18350246_SNP [dm3] 3R_22524524_SNP [dm6]	T	C	7.141e^-4	0.986	INTRON CG5346
3R	5768460	3R_5768460_SNP [dm3] 3R_9942738_SNP [dm6]	C	A	7.154e^-4	0.986	INTRON Glut4EF
3R	24326503	3R_24326503_SNP [dm3] 3R_28500781_SNP [dm6]	G	C	7.156e^-4	0.986	INTRON Dhc98D
3R	24326527	3R_24326527_SNP [dm3] 3R_28500805_SNP [dm6]	T	C	7.156e^-4	0.986	INTRON Dhc98D
3R	24326617	3R_24326617_SNP [dm3] 3R_28500895_SNP [dm6]	A	G	7.156e^-4	0.986	INTRON Dhc98D
2L	6907095	2L_6907095_SNP [dm3] 2L_6907095_SNP [dm6]	C	T	7.160e^-4	0.986	SYNONYMOUS_CODING CG13773 UPSTREAM Rat1 DOWNSTREAM Nlg2
2L	13147568	2L_13147568_SNP [dm3] 2L_13147568_SNP [dm6]	G	T	7.180e^-4	0.986	DOWNSTREAM CR44199 INTERGENIC
2L	10688529	2L_10688529_SNP [dm3] 2L_10688529_SNP [dm6]	C	T	7.188e^-4	0.986	DOWNSTREAM CG7294 INTERGENIC
2L	12669285	2L_12669285_DEL [dm3] 2L_12669285_DEL [dm6]	AA	A	7.197e^-4	0.986	UTR_5_PRIME CG15485 INTRON pdm2
2R	2425777	2R_2425777_SNP [dm3] 2R_6538272_SNP [dm6]	A	G	7.198e^-4	0.986	INTRON jing
2R	2425778	2R_2425778_SNP [dm3] 2R_6538273_SNP [dm6]	T	C	7.198e^-4	0.986	INTRON jing
X	20530840	X_20530840_SNP [dm3] X_20659813_SNP [dm6]	A	G	7.218e^-4	0.986	INTRON Cyp6v1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17102365	2R_17102365_SNP [dm3] 2R_21214860_SNP [dm6]	T	G	7.218e^-4	0.986	DOWNSTREAM CG15661 INTRON CG4302
2R	16463767	2R_16463767_SNP [dm3] 2R_20576262_SNP [dm6]	T	G	7.232e^-4	0.986	INTRON qsm
2R	16463777	2R_16463777_DEL [dm3] 2R_20576272_DEL [dm6]	CCCCCAATC	C	7.232e^-4	0.986	INTRON qsm
3L	18603651	3L_18603651_SNP [dm3] 3L_18610551_SNP [dm6]	G	A	7.235e^-4	0.986	NON_SYNONYMOUS_CODING CG32201 INTRON CG4174 & 1 other
3L	9755468	3L_9755468_SNP [dm3] 3L_9762368_SNP [dm6]	T	C	7.236e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	12951205	X_12951205_SNP [dm3] X_13057172_SNP [dm6]	A	C	7.243e^-4	0.986	INTRON rad
2L	1186679	2L_1186679_SNP [dm3] 2L_1186679_SNP [dm6]	T	C	7.259e^-4	0.986	DOWNSTREAM Tgt INTRON CG5001	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17941365	3L_17941365_SNP [dm3] 3L_17948265_SNP [dm6]	C	T	7.286e^-4	0.986	UPSTREAM CR45393 INTERGENIC
3L	17159757	3L_17159757_INS [dm3] 3L_17166657_INS [dm6]	A	AA	7.290e^-4	0.986	UPSTREAM CR43433 INTRON Rbp6
2L	8644263	2L_8644263_SNP [dm3] 2L_8644263_SNP [dm6]	G	T	7.291e^-4	0.986	INTRON Sema-1a
3L	3702156	3L_3702156_SNP [dm3] 3L_3702156_SNP [dm6]	T	G	7.308e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7395548	2R_7395548_INS [dm3] 2R_11508043_INS [dm6]	A	TT	7.314e^-4	0.986	UTR_3_PRIME inv DOWNSTREAM inv
3L	4049341	3L_4049341_SNP [dm3] 3L_4049341_SNP [dm6]	A	C	7.326e^-4	0.986	INTRON CG1136

By genomic position
Variant impact
Gene name

daughters1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results