DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.089e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.02214

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1268 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	13758101	3R_13758101_SNP [dm3] 3R_17932379_SNP [dm6]	T	C	1.360e^-6	0.98	UTR_5_PRIME cpo INTRON cpo
2R	10199786	2R_10199786_SNP [dm3] 2R_14312281_SNP [dm6]	A	C	3.376e^-6	0.98	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10199785	2R_10199785_SNP [dm3] 2R_14312280_SNP [dm6]	A	T	4.435e^-6	0.98	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9740613	3R_9740613_SNP [dm3] 3R_13914891_SNP [dm6]	A	G	4.835e^-6	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1998443	2L_1998443_SNP [dm3] 2L_1998443_SNP [dm6]	T	C	4.941e^-6	0.98	SYNONYMOUS_CODING CG33543
2L	7657831	2L_7657831_SNP [dm3] 2L_7657831_SNP [dm6]	T	C	5.024e^-6	0.98	INTRON Slob
2L	7657841	2L_7657841_SNP [dm3] 2L_7657841_SNP [dm6]	A	G	6.741e^-6	0.98	INTRON Slob
X	3994156	X_3994156_SNP [dm3] X_4100123_SNP [dm6]	G	A	8.016e^-6	0.98	SYNONYMOUS_CODING CG6379	TF binding site mE1_TFBS_sens
X	3994558	X_3994558_SNP [dm3] X_4100525_SNP [dm6]	C	T	8.016e^-6	0.98	SYNONYMOUS_CODING CG6379 UPSTREAM CG15375	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	3994561	X_3994561_SNP [dm3] X_4100528_SNP [dm6]	G	A	8.016e^-6	0.98	SYNONYMOUS_CODING CG6379 UPSTREAM CG15375	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10887069	3R_10887069_DEL [dm3] 3R_15061347_DEL [dm6]	TT	T	8.337e^-6	0.98	INTRON dpr9
3R	8133574	3R_8133574_SNP [dm3] 3R_12307852_SNP [dm6]	T	G	8.680e^-6	0.98	INTERGENIC
3L	21867568	3L_21867568_SNP [dm3] 3L_21874468_SNP [dm6]	A	C	9.110e^-6	0.98	INTRON mub
2R	20102229	2R_20102229_SNP [dm3] 2R_24214706_SNP [dm6]	C	T	9.926e^-6	0.98	UTR_3_PRIME CG30419
2L	10132387	2L_10132387_SNP [dm3] 2L_10132387_SNP [dm6]	C	A	9.945e^-6	0.98	INTRON CG44153
3R	14755658	3R_14755658_SNP [dm3] 3R_18929936_SNP [dm6]	T	C	1.128e^-5	0.98	INTRON CG42613	TF binding site BDTNP1_TFBS_dl
3R	9740640	3R_9740640_SNP [dm3] 3R_13914918_SNP [dm6]	G	C	1.204e^-5	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1035433	X_1035433_SNP [dm3] X_1141400_SNP [dm6]	T	C	1.365e^-5	0.98	INTERGENIC
3R	9740645	3R_9740645_SNP [dm3] 3R_13914923_SNP [dm6]	T	G	1.366e^-5	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9181144	X_9181144_SNP [dm3] X_9287111_SNP [dm6]	T	C	1.392e^-5	0.98	INTRON lz
2L	14265739	2L_14265739_SNP [dm3] 2L_14265739_SNP [dm6]	G	A	1.567e^-5	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	3390317	3L_3390317_SNP [dm3] 3L_3390317_SNP [dm6]	A	G	1.585e^-5	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9087612	3R_9087612_SNP [dm3] 3R_13261890_SNP [dm6]	T	C	1.776e^-5	0.98	DOWNSTREAM Ravus INTRON CG11686
2R	5131633	2R_5131633_SNP [dm3] 2R_9244128_SNP [dm6]	A	G	1.955e^-5	0.98	INTRON hig & 1 other
2R	5131647	2R_5131647_SNP [dm3] 2R_9244142_SNP [dm6]	A	G	1.955e^-5	0.98	INTRON hig & 1 other
2R	5131651	2R_5131651_SNP [dm3] 2R_9244146_SNP [dm6]	G	T	1.955e^-5	0.98	INTRON hig & 1 other
2R	5131668	2R_5131668_SNP [dm3] 2R_9244163_SNP [dm6]	C	T	1.955e^-5	0.98	INTRON hig & 1 other
2R	5131670	2R_5131670_SNP [dm3] 2R_9244165_SNP [dm6]	T	A	1.955e^-5	0.98	INTRON hig & 1 other
2L	14265675	2L_14265675_SNP [dm3] 2L_14265675_SNP [dm6]	A	G	2.065e^-5	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	4759694	3R_4759694_SNP [dm3] 3R_8933972_SNP [dm6]	T	G	2.073e^-5	0.98	DOWNSTREAM CR44020 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	12634826	3L_12634826_SNP [dm3] 3L_12641726_SNP [dm6]	T	C	2.076e^-5	0.98	INTRON CR32111	TF binding site BDTNP1_TFBS_twi
3R	9095758	3R_9095758_SNP [dm3] 3R_13270036_SNP [dm6]	C	A	2.127e^-5	0.98	UTR_3_PRIME Su_var_3-7 DOWNSTREAM Su_var_3-7 INTRON CG8449
2R	18640254	2R_18640254_SNP [dm3] 2R_22752749_SNP [dm6]	A	G	2.135e^-5	0.98	INTRON CG42260
2R	18818784	2R_18818784_SNP [dm3] 2R_22931261_SNP [dm6]	C	G	2.213e^-5	0.98	SYNONYMOUS_CODING CG42678 DOWNSTREAM CG3788 INTRON CG42678
2R	18819000	2R_18819000_SNP [dm3] 2R_22931477_SNP [dm6]	T	G	2.213e^-5	0.98	DOWNSTREAM CG3788 INTRON CG42678
2R	16339026	2R_16339026_SNP [dm3] 2R_20451521_SNP [dm6]	G	C	2.238e^-5	0.98	INTRON CG12484
3R	10887155	3R_10887155_SNP [dm3] 3R_15061433_SNP [dm6]	G	T	2.278e^-5	0.98	INTRON dpr9
3L	3390456	3L_3390456_SNP [dm3] 3L_3390456_SNP [dm6]	C	G	2.428e^-5	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3390458	3L_3390458_SNP [dm3] 3L_3390458_SNP [dm6]	A	T	2.428e^-5	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3390512	3L_3390512_INS [dm3] 3L_3390512_INS [dm6]	C	TAAG	2.428e^-5	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3390516	3L_3390516_DEL [dm3] 3L_3390516_DEL [dm6]	CT	C	2.428e^-5	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14265716	2L_14265716_SNP [dm3] 2L_14265716_SNP [dm6]	G	A	2.580e^-5	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	750430	3L_750430_SNP [dm3] 3L_750430_SNP [dm6]	A	G	2.583e^-5	0.98	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
2L	10132385	2L_10132385_SNP [dm3] 2L_10132385_SNP [dm6]	G	A	2.583e^-5	0.98	INTRON CG44153
3R	9740632	3R_9740632_SNP [dm3] 3R_13914910_SNP [dm6]	G	A	2.664e^-5	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21496715	3R_21496715_SNP [dm3] 3R_25670993_SNP [dm6]	G	T	2.803e^-5	0.98	INTRON Lgr3
3R	14754796	3R_14754796_SNP [dm3] 3R_18929074_SNP [dm6]	C	T	2.897e^-5	0.98	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10886791	3R_10886791_SNP [dm3] 3R_15061069_SNP [dm6]	T	A	2.914e^-5	0.98	INTRON dpr9
3R	10886794	3R_10886794_SNP [dm3] 3R_15061072_SNP [dm6]	T	C	2.914e^-5	0.98	INTRON dpr9
3R	10886807	3R_10886807_SNP [dm3] 3R_15061085_SNP [dm6]	A	T	2.914e^-5	0.98	INTRON dpr9
3R	10915767	3R_10915767_DEL [dm3] 3R_15090045_DEL [dm6]	ATAGATTCAATTCTACA...	A	2.915e^-5	0.98	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6756837	3L_6756837_SNP [dm3] 3L_6763737_SNP [dm6]	T	C	2.994e^-5	0.98	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	7873493	3R_7873493_SNP [dm3] 3R_12047771_SNP [dm6]	C	G	3.114e^-5	0.98	DOWNSTREAM CG14739 INTERGENIC
3L	6756838	3L_6756838_SNP [dm3] 3L_6763738_SNP [dm6]	G	A	3.134e^-5	0.98	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	6756840	3L_6756840_SNP [dm3] 3L_6763740_SNP [dm6]	A	G	3.134e^-5	0.98	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	1828364	3L_1828364_SNP [dm3] 3L_1828364_SNP [dm6]	A	G	3.272e^-5	0.98	INTRON Cpr62Ba
3R	14754839	3R_14754839_SNP [dm3] 3R_18929117_SNP [dm6]	A	T	3.403e^-5	0.98	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6756868	3L_6756868_SNP [dm3] 3L_6763768_SNP [dm6]	G	A	3.673e^-5	0.98	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	6756881	3L_6756881_SNP [dm3] 3L_6763781_SNP [dm6]	A	T	3.673e^-5	0.98	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	5814998	3L_5814998_SNP [dm3] 3L_5821898_SNP [dm6]	C	T	3.682e^-5	0.98	INTRON vn
3R	9530012	3R_9530012_SNP [dm3] 3R_13704290_SNP [dm6]	G	C	3.817e^-5	0.98	INTRON Adgf-D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15058527	2L_15058527_SNP [dm3] 2L_15058527_SNP [dm6]	A	C	3.820e^-5	0.98	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
3R	10910192	3R_10910192_SNP [dm3] 3R_15084470_SNP [dm6]	G	T	3.913e^-5	0.98	INTRON CG6966
2L	14265677	2L_14265677_SNP [dm3] 2L_14265677_SNP [dm6]	A	G	4.078e^-5	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	10630882	2L_10630882_SNP [dm3] 2L_10630882_SNP [dm6]	A	G	4.103e^-5	0.98	SYNONYMOUS_CODING CG7329
2L	10630900	2L_10630900_SNP [dm3] 2L_10630900_SNP [dm6]	T	C	4.103e^-5	0.98	SYNONYMOUS_CODING CG7329
3L	8401421	3L_8401421_SNP [dm3] 3L_8408321_SNP [dm6]	T	A	4.553e^-5	0.98	SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
3R	10915578	3R_10915578_SNP [dm3] 3R_15089856_SNP [dm6]	G	A	4.778e^-5	0.98	INTRON CG6966	TF binding site mE1_TFBS_Trl
2R	18818906	2R_18818906_SNP [dm3] 2R_22931383_SNP [dm6]	C	T	4.794e^-5	0.98	DOWNSTREAM CG3788 INTRON CG42678
2R	17614570	2R_17614570_SNP [dm3] 2R_21727065_SNP [dm6]	T	C	5.075e^-5	0.98	DOWNSTREAM CR44750 INTERGENIC
3L	5815167	3L_5815167_SNP [dm3] 3L_5822067_SNP [dm6]	C	G	5.093e^-5	0.98	INTRON vn
3L	5815175	3L_5815175_SNP [dm3] 3L_5822075_SNP [dm6]	T	G	5.093e^-5	0.98	INTRON vn
3R	14754808	3R_14754808_SNP [dm3] 3R_18929086_SNP [dm6]	G	A	5.151e^-5	0.98	UPSTREAM CG42613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5815094	3L_5815094_SNP [dm3] 3L_5821994_SNP [dm6]	G	A	5.529e^-5	0.98	INTRON vn
3L	7590825	3L_7590825_SNP [dm3] 3L_7597725_SNP [dm6]	T	C	5.724e^-5	0.98	INTRON CG33275
2R	18819015	2R_18819015_SNP [dm3] 2R_22931492_SNP [dm6]	T	A	5.796e^-5	0.98	DOWNSTREAM CG3788 INTRON CG42678
3L	22017686	3L_22017686_SNP [dm3] 3L_22024586_SNP [dm6]	C	T	5.852e^-5	0.98	INTERGENIC
2L	4753753	2L_4753753_SNP [dm3] 2L_4753753_SNP [dm6]	A	T	6.115e^-5	0.98	INTRON CG15630
3R	25850660	3R_25850660_SNP [dm3] 3R_30024938_SNP [dm6]	T	G	6.565e^-5	0.98	INTRON Axn
3R	7869981	3R_7869981_SNP [dm3] 3R_12044259_SNP [dm6]	T	C	6.601e^-5	0.98	DOWNSTREAM CG14736 INTERGENIC
2L	14265526	2L_14265526_SNP [dm3] 2L_14265526_SNP [dm6]	A	C	6.617e^-5	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	7123609	3L_7123609_SNP [dm3] 3L_7130509_SNP [dm6]	A	T	6.645e^-5	0.98	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	21889842	3L_21889842_SNP [dm3] 3L_21896742_SNP [dm6]	T	A	7.120e^-5	0.98	INTRON mub
3R	20734950	3R_20734950_SNP [dm3] 3R_24909228_SNP [dm6]	T	C	7.183e^-5	0.98	INTERGENIC
3R	10915855	3R_10915855_SNP [dm3] 3R_15090133_SNP [dm6]	G	C	7.199e^-5	0.98	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	8152800	3R_8152800_SNP [dm3] 3R_12327078_SNP [dm6]	C	A	7.229e^-5	0.98	UPSTREAM CR45584 INTERGENIC
3R	8152807	3R_8152807_SNP [dm3] 3R_12327085_SNP [dm6]	C	A	7.229e^-5	0.98	UPSTREAM CR45584 INTERGENIC
3R	8152809	3R_8152809_DEL [dm3] 3R_12327087_DEL [dm6]	GG	C	7.229e^-5	0.98	UPSTREAM CR45584 INTERGENIC
3R	8218856	3R_8218856_SNP [dm3] 3R_12393134_SNP [dm6]	G	A	7.304e^-5	0.98	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 UPSTREAM CG10096 DOWNSTREAM CG10097 INTRON CG34402	TF binding site mE1_TFBS_cad
2R	18643231	2R_18643231_SNP [dm3] 2R_22755726_SNP [dm6]	T	C	7.376e^-5	0.98	SYNONYMOUS_CODING CG13526 UPSTREAM CR30267 INTRON CG42260	TF binding site BDTNP1_TFBS_da
2R	17614573	2R_17614573_SNP [dm3] 2R_21727068_SNP [dm6]	G	A	7.560e^-5	0.98	DOWNSTREAM CR44750 INTERGENIC
3L	5398609	3L_5398609_SNP [dm3] 3L_5405509_SNP [dm6]	T	C	7.845e^-5	0.98	INTERGENIC
2R	8273165	2R_8273165_SNP [dm3] 2R_12385660_SNP [dm6]	G	A	7.895e^-5	0.98	INTERGENIC
3L	8216698	3L_8216698_SNP [dm3] 3L_8223598_SNP [dm6]	C	A	7.940e^-5	0.98	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
3L	22030669	3L_22030669_SNP [dm3] 3L_22037569_SNP [dm6]	G	A	7.996e^-5	0.98	INTRON Oct-TyrR
3L	750429	3L_750429_SNP [dm3] 3L_750429_SNP [dm6]	T	A	8.209e^-5	0.98	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3L	750435	3L_750435_SNP [dm3] 3L_750435_SNP [dm6]	T	G	8.209e^-5	0.98	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3L	750450	3L_750450_MNP [dm3] 3L_750450_MNP [dm6]	CGA	ACC	8.209e^-5	0.98	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3L	750457	3L_750457_SNP [dm3] 3L_750457_SNP [dm6]	C	A	8.209e^-5	0.98	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3L	750458	3L_750458_SNP [dm3] 3L_750458_SNP [dm6]	G	C	8.209e^-5	0.98	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
2R	18797276	2R_18797276_SNP [dm3] 2R_22909753_SNP [dm6]	C	A	8.233e^-5	0.98	INTRON nahoda
3L	5225356	3L_5225356_SNP [dm3] 3L_5232256_SNP [dm6]	A	C	8.342e^-5	0.98	INTRON shep
3R	9530065	3R_9530065_SNP [dm3] 3R_13704343_SNP [dm6]	T	C	8.453e^-5	0.98	SYNONYMOUS_CODING Adgf-D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18350084	2L_18350084_SNP [dm3] 2L_18350084_SNP [dm6]	C	T	8.465e^-5	0.98	INTRON Fas3
3R	21327975	3R_21327975_SNP [dm3] 3R_25502253_SNP [dm6]	C	T	8.469e^-5	0.98	UPSTREAM CR43457 EXON CR43456	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8513345	2R_8513345_SNP [dm3] 2R_12625840_SNP [dm6]	A	G	8.655e^-5	0.98	UTR_5_PRIME CG17760 DOWNSTREAM CG30054
2R	8513350	2R_8513350_SNP [dm3] 2R_12625845_SNP [dm6]	T	C	8.655e^-5	0.98	START_GAINED CG17760 UTR_5_PRIME CG17760 DOWNSTREAM CG30054
2R	8513371	2R_8513371_SNP [dm3] 2R_12625866_SNP [dm6]	C	G	8.655e^-5	0.98	UTR_5_PRIME CG17760 DOWNSTREAM CG30054
2R	8703569	2R_8703569_SNP [dm3] 2R_12816064_SNP [dm6]	A	C	8.747e^-5	0.98	INTERGENIC
3R	9331826	3R_9331826_SNP [dm3] 3R_13506104_SNP [dm6]	C	A	8.764e^-5	0.98	INTERGENIC
3L	16154744	3L_16154744_SNP [dm3] 3L_16161644_SNP [dm6]	G	C	9.060e^-5	0.98	INTRON CG5151	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10632198	2L_10632198_SNP [dm3] 2L_10632198_SNP [dm6]	T	C	9.100e^-5	0.98	INTRON CG7329
2R	17219902	2R_17219902_SNP [dm3] 2R_21332397_SNP [dm6]	T	C	9.130e^-5	0.98	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-A2589c	TF binding site mE1_TFBS_cad
2L	17983392	2L_17983392_SNP [dm3] 2L_17983392_SNP [dm6]	C	G	9.136e^-5	0.98	UPSTREAM btv INTERGENIC
3R	17638062	3R_17638062_SNP [dm3] 3R_21812340_SNP [dm6]	C	G	9.216e^-5	0.98	INTRON CASK
3L	13592909	3L_13592909_SNP [dm3] 3L_13599809_SNP [dm6]	G	A	9.245e^-5	0.98	INTRON bru-3 EXON CR45120
3L	13593386	3L_13593386_SNP [dm3] 3L_13600286_SNP [dm6]	T	C	9.245e^-5	0.98	DOWNSTREAM CR45120 INTRON bru-3
3L	18160161	3L_18160161_SNP [dm3] 3L_18167061_SNP [dm6]	A	G	9.262e^-5	0.98	DOWNSTREAM W INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4045591	2L_4045591_SNP [dm3] 2L_4045591_SNP [dm6]	A	T	9.375e^-5	0.98	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19433155	X_19433155_SNP [dm3] X_19539122_SNP [dm6]	A	G	9.436e^-5	0.98	INTRON CG32532
3L	1679634	3L_1679634_SNP [dm3] 3L_1679634_SNP [dm6]	A	T	9.509e^-5	0.98	INTRON CG7991
X	5451681	X_5451681_SNP [dm3] X_5557648_SNP [dm6]	G	A	9.544e^-5	0.98	INTRON Vsx2
3L	3390432	3L_3390432_SNP [dm3] 3L_3390432_SNP [dm6]	G	A	9.626e^-5	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3994004	X_3994004_DEL [dm3] X_4099971_DEL [dm6]	AA	A	9.752e^-5	0.98	INTRON CG6379	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24111556	3R_24111556_SNP [dm3] 3R_28285834_SNP [dm6]	A	G	1.000e^-4	0.98	INTERGENIC
2R	8242861	2R_8242861_SNP [dm3] 2R_12355356_SNP [dm6]	A	G	1.005e^-4	0.98	UTR_3_PRIME CG30047 UPSTREAM CG30049
2L	12641873	2L_12641873_DEL [dm3] 2L_12641873_DEL [dm6]	CT	C	1.024e^-4	0.98	INTRON Ref2
3L	22013412	3L_22013412_SNP [dm3] 3L_22020312_SNP [dm6]	A	G	1.041e^-4	0.98	INTERGENIC
3L	22031820	3L_22031820_SNP [dm3] 3L_22038720_SNP [dm6]	T	A	1.047e^-4	0.98	INTRON Oct-TyrR
3R	10285073	3R_10285073_SNP [dm3] 3R_14459351_SNP [dm6]	C	T	1.047e^-4	0.98	INTRON cv-c
X	2896914	X_2896914_DEL [dm3] X_3002881_DEL [dm6]	TGCATTCGTGCAT...	T	1.051e^-4	0.98	INTRON kirre
X	2896937	X_2896937_SNP [dm3] X_3002904_SNP [dm6]	C	T	1.051e^-4	0.98	INTRON kirre
3L	5083286	3L_5083286_SNP [dm3] 3L_5083286_SNP [dm6]	T	C	1.058e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5416191	3L_5416191_SNP [dm3] 3L_5423091_SNP [dm6]	C	T	1.062e^-4	0.98	INTERGENIC
3R	10689502	3R_10689502_SNP [dm3] 3R_14863780_SNP [dm6]	A	G	1.075e^-4	0.98	INTRON btsz
X	1040176	X_1040176_SNP [dm3] X_1146143_SNP [dm6]	C	G	1.128e^-4	0.98	DOWNSTREAM CG14628 INTERGENIC
2R	15662483	2R_15662483_SNP [dm3] 2R_19774978_SNP [dm6]	C	T	1.132e^-4	0.98	INTERGENIC
3R	14212601	3R_14212601_SNP [dm3] 3R_18386879_SNP [dm6]	T	G	1.133e^-4	0.98	UTR_3_PRIME cona & 1 other	TF binding site mE1_TFBS_cad
3R	14212646	3R_14212646_SNP [dm3] 3R_18386924_SNP [dm6]	T	C	1.133e^-4	0.98	UTR_3_PRIME Vha100-4 DOWNSTREAM cona	TF binding site mE1_TFBS_cad
3R	14212650	3R_14212650_SNP [dm3] 3R_18386928_SNP [dm6]	G	T	1.133e^-4	0.98	UTR_3_PRIME Vha100-4 DOWNSTREAM cona	TF binding site mE1_TFBS_cad
3R	14212657	3R_14212657_SNP [dm3] 3R_18386935_SNP [dm6]	A	C	1.133e^-4	0.98	UTR_3_PRIME Vha100-4 DOWNSTREAM cona	TF binding site mE1_TFBS_cad
3R	14212662	3R_14212662_SNP [dm3] 3R_18386940_SNP [dm6]	G	T	1.133e^-4	0.98	UTR_3_PRIME Vha100-4 DOWNSTREAM cona	TF binding site mE1_TFBS_cad
3R	14212666	3R_14212666_SNP [dm3] 3R_18386944_SNP [dm6]	G	A	1.133e^-4	0.98	UTR_3_PRIME Vha100-4 DOWNSTREAM cona	TF binding site mE1_TFBS_cad
3R	14212707	3R_14212707_SNP [dm3] 3R_18386985_SNP [dm6]	T	A	1.133e^-4	0.98	NON_SYNONYMOUS_CODING Vha100-4 DOWNSTREAM cona	TF binding site mE1_TFBS_cad
3L	9808079	3L_9808079_SNP [dm3] 3L_9814979_SNP [dm6]	G	C	1.135e^-4	0.98	INTRON CG43897
2L	7230817	2L_7230817_SNP [dm3] 2L_7230817_SNP [dm6]	G	A	1.137e^-4	0.98	INTRON Ndae1
2L	14265810	2L_14265810_SNP [dm3] 2L_14265810_SNP [dm6]	T	C	1.141e^-4	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	14265779	2L_14265779_SNP [dm3] 2L_14265779_SNP [dm6]	T	C	1.154e^-4	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	17172225	2R_17172225_SNP [dm3] 2R_21284720_SNP [dm6]	A	T	1.155e^-4	0.98	SYNONYMOUS_CODING MFS16 DOWNSTREAM CG10505
3R	9978926	3R_9978926_SNP [dm3] 3R_14153204_SNP [dm6]	G	A	1.164e^-4	0.98	SYNONYMOUS_CODING CG9722 UPSTREAM CG42500 DOWNSTREAM CR44215
2L	13324148	2L_13324148_SNP [dm3] 2L_13324148_SNP [dm6]	T	G	1.166e^-4	0.98	INTRON CG43778
3R	8421231	3R_8421231_SNP [dm3] 3R_12595509_SNP [dm6]	T	A	1.171e^-4	0.98	UTR_5_PRIME Octbeta2R INTRON Octbeta2R	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13183106	3L_13183106_SNP [dm3] 3L_13190006_SNP [dm6]	G	T	1.178e^-4	0.98	INTERGENIC
3L	15509231	3L_15509231_SNP [dm3] 3L_15516131_SNP [dm6]	G	A	1.182e^-4	0.98	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	13579166	2R_13579166_SNP [dm3] 2R_17691661_SNP [dm6]	T	G	1.189e^-4	0.98	DOWNSTREAM HPS4 INTRON swi2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8160337	3R_8160337_SNP [dm3] 3R_12334615_SNP [dm6]	T	G	1.193e^-4	0.98	INTERGENIC
3L	22013822	3L_22013822_SNP [dm3] 3L_22020722_SNP [dm6]	C	A	1.197e^-4	0.98	INTERGENIC
2L	11295746	2L_11295746_INS [dm3] 2L_11295746_INS [dm6]	G	GG	1.198e^-4	0.98	INTERGENIC
3R	6413877	3R_6413877_SNP [dm3] 3R_10588155_SNP [dm6]	G	C	1.198e^-4	0.98	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5524682	2L_5524682_SNP [dm3] 2L_5524682_SNP [dm6]	C	T	1.206e^-4	0.98	SYNONYMOUS_CODING CG6907 UPSTREAM CG7371	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	10052120	3R_10052120_SNP [dm3] 3R_14226398_SNP [dm6]	C	T	1.209e^-4	0.98	SYNONYMOUS_CODING CG9631
2R	5131662	2R_5131662_INS [dm3] 2R_9244157_INS [dm6]	C	CC	1.219e^-4	0.98	INTRON hig & 1 other
2R	18821225	2R_18821225_SNP [dm3] 2R_22933702_SNP [dm6]	A	T	1.224e^-4	0.98	UTR_5_PRIME CG3788 UPSTREAM CG3788 DOWNSTREAM CG3800	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	5116294	3R_5116294_SNP [dm3] 3R_9290572_SNP [dm6]	T	C	1.224e^-4	0.98	INTERGENIC
2L	14265547	2L_14265547_SNP [dm3] 2L_14265547_SNP [dm6]	A	G	1.239e^-4	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	20734901	3R_20734901_SNP [dm3] 3R_24909179_SNP [dm6]	T	C	1.239e^-4	0.98	INTERGENIC
3R	20734921	3R_20734921_SNP [dm3] 3R_24909199_SNP [dm6]	G	A	1.239e^-4	0.98	INTERGENIC
3R	7873175	3R_7873175_SNP [dm3] 3R_12047453_SNP [dm6]	T	C	1.241e^-4	0.98	DOWNSTREAM CG14739 INTERGENIC
2L	7707259	2L_7707259_SNP [dm3] 2L_7707259_SNP [dm6]	G	A	1.249e^-4	0.98	DOWNSTREAM CR44990 INTRON Tep3	TF binding site mE1_TFBS_inv
2R	6645723	2R_6645723_SNP [dm3] 2R_10758218_SNP [dm6]	G	A	1.252e^-4	0.98	INTRON CG33144
2L	10814383	2L_10814383_SNP [dm3] 2L_10814383_SNP [dm6]	T	A	1.259e^-4	0.98	INTRON Nos
3R	26076163	3R_26076163_SNP [dm3] 3R_30250441_SNP [dm6]	C	A	1.275e^-4	0.98	NON_SYNONYMOUS_CODING CG34299 UPSTREAM CG9682 DOWNSTREAM CG34299
3L	21859222	3L_21859222_SNP [dm3] 3L_21866122_SNP [dm6]	T	A	1.276e^-4	0.98	INTRON mub
3R	10891207	3R_10891207_SNP [dm3] 3R_15065485_SNP [dm6]	G	C	1.303e^-4	0.98	INTRON dpr9
3R	7307007	3R_7307007_SNP [dm3] 3R_11481285_SNP [dm6]	G	T	1.313e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5121606	2R_5121606_SNP [dm3] 2R_9234101_SNP [dm6]	T	A	1.316e^-4	0.98	INTRON hig	TF binding site mE1_TFBS_cad
2R	5121629	2R_5121629_SNP [dm3] 2R_9234124_SNP [dm6]	T	A	1.316e^-4	0.98	INTRON hig	TF binding site mE1_TFBS_cad
3L	6506257	3L_6506257_SNP [dm3] 3L_6513157_SNP [dm6]	G	A	1.318e^-4	0.98	INTRON sfl
3L	9824778	3L_9824778_SNP [dm3] 3L_9831678_SNP [dm6]	T	A	1.325e^-4	0.98	INTRON CG43897
2L	14265733	2L_14265733_SNP [dm3] 2L_14265733_SNP [dm6]	T	G	1.326e^-4	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	15391569	X_15391569_INS [dm3] X_15497536_INS [dm6]	A	ATATTAAATTAAAAACACAG...	1.345e^-4	0.98	INTRON Gmap EXON CR44888	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8703577	2R_8703577_SNP [dm3] 2R_12816072_SNP [dm6]	C	T	1.345e^-4	0.98	INTERGENIC
3R	10891191	3R_10891191_SNP [dm3] 3R_15065469_SNP [dm6]	C	T	1.346e^-4	0.98	INTRON dpr9
3R	19864557	3R_19864557_SNP [dm3] 3R_24038835_SNP [dm6]	T	C	1.353e^-4	0.98	SYNONYMOUS_CODING spas UTR_5_PRIME Miro
2L	5397513	2L_5397513_SNP [dm3] 2L_5397513_SNP [dm6]	T	C	1.356e^-4	0.98	INTERGENIC
2L	14265801	2L_14265801_SNP [dm3] 2L_14265801_SNP [dm6]	T	G	1.356e^-4	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	21495233	3R_21495233_SNP [dm3] 3R_25669511_SNP [dm6]	A	C	1.360e^-4	0.98	INTRON Lgr3
3R	17638361	3R_17638361_INS [dm3] 3R_21812639_INS [dm6]	A	AGTC	1.363e^-4	0.98	INTRON CASK
3R	17638378	3R_17638378_SNP [dm3] 3R_21812656_SNP [dm6]	T	G	1.363e^-4	0.98	INTRON CASK
3R	17638748	3R_17638748_SNP [dm3] 3R_21813026_SNP [dm6]	G	A	1.363e^-4	0.98	INTRON CASK
3R	17638772	3R_17638772_SNP [dm3] 3R_21813050_SNP [dm6]	A	C	1.363e^-4	0.98	INTRON CASK
3R	17638789	3R_17638789_SNP [dm3] 3R_21813067_SNP [dm6]	A	T	1.363e^-4	0.98	INTRON CASK
2L	7707248	2L_7707248_SNP [dm3] 2L_7707248_SNP [dm6]	G	A	1.378e^-4	0.98	DOWNSTREAM CR44990 INTRON Tep3	TF binding site mE1_TFBS_inv
3L	7288840	3L_7288840_SNP [dm3] 3L_7295740_SNP [dm6]	A	C	1.389e^-4	0.98	INTRON unc-13-4A
2R	16963012	2R_16963012_SNP [dm3] 2R_21075507_SNP [dm6]	G	A	1.389e^-4	0.98	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	9204130	X_9204130_SNP [dm3] X_9310097_SNP [dm6]	G	A	1.407e^-4	0.98	INTERGENIC
3L	15523128	3L_15523128_SNP [dm3] 3L_15530028_SNP [dm6]	G	T	1.422e^-4	0.98	UPSTREAM obst-H DOWNSTREAM CG43248 INTERGENIC
2L	20390987	2L_20390987_SNP [dm3] 2L_20390987_SNP [dm6]	A	G	1.446e^-4	0.98	INTRON CG10947
3R	9893049	3R_9893049_SNP [dm3] 3R_14067327_SNP [dm6]	G	A	1.459e^-4	0.98	INTRON foxo
2R	9754217	2R_9754217_SNP [dm3] 2R_13866712_SNP [dm6]	T	C	1.462e^-4	0.98	SYNONYMOUS_CODING shot
2L	20128078	2L_20128078_SNP [dm3] 2L_20128078_SNP [dm6]	C	A	1.464e^-4	0.98	INTERGENIC
3L	5226046	3L_5226046_SNP [dm3] 3L_5232946_SNP [dm6]	A	G	1.479e^-4	0.98	INTRON shep
3L	5226177	3L_5226177_SNP [dm3] 3L_5233077_SNP [dm6]	A	C	1.479e^-4	0.98	INTRON shep
3L	22015640	3L_22015640_SNP [dm3] 3L_22022540_SNP [dm6]	T	A	1.480e^-4	0.98	INTERGENIC
3L	22015641	3L_22015641_SNP [dm3] 3L_22022541_SNP [dm6]	T	C	1.480e^-4	0.98	INTERGENIC
3R	19203467	3R_19203467_SNP [dm3] 3R_23377745_SNP [dm6]	T	C	1.486e^-4	0.98	INTRON CG4393	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11254789	3L_11254789_SNP [dm3] 3L_11261689_SNP [dm6]	T	A	1.487e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6454638	3R_6454638_SNP [dm3] 3R_10628916_SNP [dm6]	C	G	1.552e^-4	0.98	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_inv
3L	5815112	3L_5815112_SNP [dm3] 3L_5822012_SNP [dm6]	A	C	1.569e^-4	0.98	INTRON vn
3R	8890778	3R_8890778_INS [dm3] 3R_13065056_INS [dm6]	T	TTAT	1.604e^-4	0.98	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	9537658	2R_9537658_SNP [dm3] 2R_13650153_SNP [dm6]	C	T	1.634e^-4	0.98	INTRON fas
3R	26074060	3R_26074060_SNP [dm3] 3R_30248338_SNP [dm6]	A	C	1.645e^-4	0.98	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7878388	3R_7878388_SNP [dm3] 3R_12052666_SNP [dm6]	C	G	1.658e^-4	0.98	INTERGENIC
X	5448864	X_5448864_SNP [dm3] X_5554831_SNP [dm6]	C	A	1.661e^-4	0.98	INTRON Vsx2	TF binding site mE1_TFBS_cnc
2L	8985147	2L_8985147_SNP [dm3] 2L_8985147_SNP [dm6]	C	T	1.675e^-4	0.98	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13217071	2R_13217071_SNP [dm3] 2R_17329566_SNP [dm6]	A	G	1.691e^-4	0.98	INTRON mbl
3L	4723950	3L_4723950_SNP [dm3] 3L_4723950_SNP [dm6]	T	C	1.709e^-4	0.98	INTRON RhoGEF64C
2L	7060435	2L_7060435_SNP [dm3] 2L_7060435_SNP [dm6]	T	G	1.716e^-4	0.98	NON_SYNONYMOUS_CODING CG31907 INTRON Mnn1
2L	10873586	2L_10873586_SNP [dm3] 2L_10873586_SNP [dm6]	T	C	1.744e^-4	0.98	INTERGENIC
X	8174415	X_8174415_SNP [dm3] X_8280382_SNP [dm6]	C	G	1.746e^-4	0.98	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9994244	3R_9994244_SNP [dm3] 3R_14168522_SNP [dm6]	A	G	1.752e^-4	0.98	UTR_3_PRIME Dop1R1
3L	9829757	3L_9829757_SNP [dm3] 3L_9836657_SNP [dm6]	T	A	1.752e^-4	0.98	UTR_5_PRIME I-2 UPSTREAM I-2 DOWNSTREAM Cdk8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17384399	3R_17384399_SNP [dm3] 3R_21558677_SNP [dm6]	C	G	1.756e^-4	0.98	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	784298	2L_784298_SNP [dm3] 2L_784298_SNP [dm6]	T	C	1.762e^-4	0.98	UPSTREAM CG3544 INTERGENIC
3L	21939333	3L_21939333_SNP [dm3] 3L_21946233_SNP [dm6]	A	G	1.766e^-4	0.98	INTRON CG14562
3L	22019152	3L_22019152_DEL [dm3] 3L_22026052_DEL [dm6]	TTT	T	1.766e^-4	0.98	DOWNSTREAM CG7140 INTERGENIC
3L	22019164	3L_22019164_DEL [dm3] 3L_22026064_DEL [dm6]	CAAC	C	1.766e^-4	0.98	DOWNSTREAM CG7140 INTERGENIC
2R	17219815	2R_17219815_SNP [dm3] 2R_21332310_SNP [dm6]	A	T	1.793e^-4	0.98	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-A2589c	TF binding site mE1_TFBS_cad
2L	17983377	2L_17983377_SNP [dm3] 2L_17983377_SNP [dm6]	T	G	1.801e^-4	0.98	UPSTREAM btv INTERGENIC
3L	5815115	3L_5815115_SNP [dm3] 3L_5822015_SNP [dm6]	G	T	1.812e^-4	0.98	INTRON vn
3L	10943177	3L_10943177_SNP [dm3] 3L_10950077_SNP [dm6]	C	A	1.818e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	785038	2L_785038_SNP [dm3] 2L_785038_SNP [dm6]	C	T	1.825e^-4	0.98	SYNONYMOUS_CODING CG3544	TF binding site mE1_TFBS_chinmo
2L	12853294	2L_12853294_SNP [dm3] 2L_12853294_SNP [dm6]	G	C	1.830e^-4	0.98	INTERGENIC
2L	12853828	2L_12853828_SNP [dm3] 2L_12853828_SNP [dm6]	A	G	1.830e^-4	0.98	INTERGENIC
3L	1259292	3L_1259292_SNP [dm3] 3L_1259292_SNP [dm6]	C	T	1.835e^-4	0.98	INTRON CG9134
2R	15662451	2R_15662451_SNP [dm3] 2R_19774946_SNP [dm6]	C	T	1.855e^-4	0.98	INTERGENIC
3R	9497562	3R_9497562_SNP [dm3] 3R_13671840_SNP [dm6]	A	G	1.862e^-4	0.98	INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7872822	3R_7872822_SNP [dm3] 3R_12047100_SNP [dm6]	G	A	1.877e^-4	0.98	INTERGENIC
X	4663113	X_4663113_SNP [dm3] X_4769080_SNP [dm6]	C	T	1.886e^-4	0.98	UTR_3_PRIME CG15472	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5019192	2L_5019192_SNP [dm3] 2L_5019192_SNP [dm6]	G	T	1.919e^-4	0.98	INTRON vkg
3R	17638350	3R_17638350_DEL [dm3] 3R_21812628_DEL [dm6]	TTGCTATTGCC...	T	1.929e^-4	0.98	INTRON CASK
3L	19047593	3L_19047593_SNP [dm3] 3L_19054493_SNP [dm6]	C	G	1.937e^-4	0.98	INTERGENIC	regulatory region REDfly_CRMs
3R	22984051	3R_22984051_SNP [dm3] 3R_27158329_SNP [dm6]	C	T	1.937e^-4	0.98	SYNONYMOUS_CODING grass DOWNSTREAM Men-b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10631376	2L_10631376_SNP [dm3] 2L_10631376_SNP [dm6]	T	G	1.939e^-4	0.98	UPSTREAM CG7329 INTRON CG7329
3R	8890784	3R_8890784_SNP [dm3] 3R_13065062_SNP [dm6]	T	G	1.947e^-4	0.98	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	8483509	3R_8483509_SNP [dm3] 3R_12657787_SNP [dm6]	C	T	1.980e^-4	0.98	INTRON CG6225	TF binding site mE1_TFBS_cad
2R	17740769	2R_17740769_SNP [dm3] 2R_21853264_SNP [dm6]	C	G	1.981e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11254738	3L_11254738_SNP [dm3] 3L_11261638_SNP [dm6]	A	T	2.018e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17172143	2R_17172143_SNP [dm3] 2R_21284638_SNP [dm6]	C	T	2.026e^-4	0.98	DOWNSTREAM CG10505 INTRON MFS16
X	3811953	X_3811953_SNP [dm3] X_3917920_SNP [dm6]	A	G	2.040e^-4	0.98	INTRON CG42541
3L	9829629	3L_9829629_SNP [dm3] 3L_9836529_SNP [dm6]	A	T	2.070e^-4	0.98	UTR_5_PRIME I-2 UPSTREAM I-2 DOWNSTREAM Cdk8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	22028852	3L_22028852_SNP [dm3] 3L_22035752_SNP [dm6]	T	C	2.071e^-4	0.98	INTRON Oct-TyrR
3R	17203947	3R_17203947_SNP [dm3] 3R_21378225_SNP [dm6]	T	C	2.075e^-4	0.98	UPSTREAM mod_mdg4_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	5228435	3L_5228435_SNP [dm3] 3L_5235335_SNP [dm6]	C	T	2.110e^-4	0.98	SYNONYMOUS_CODING CG4669 INTRON shep	TF binding site mE1_TFBS_sens
2L	13873826	2L_13873826_SNP [dm3] 2L_13873826_SNP [dm6]	A	C	2.120e^-4	0.98	INTRON CenG1A
3L	12650685	3L_12650685_SNP [dm3] 3L_12657585_SNP [dm6]	G	A	2.120e^-4	0.98	INTERGENIC
3L	15523132	3L_15523132_SNP [dm3] 3L_15530032_SNP [dm6]	A	G	2.133e^-4	0.98	UPSTREAM obst-H DOWNSTREAM CG43248 INTERGENIC
3L	15523135	3L_15523135_SNP [dm3] 3L_15530035_SNP [dm6]	T	A	2.133e^-4	0.98	UPSTREAM obst-H DOWNSTREAM CG43248 INTERGENIC
3L	15523136	3L_15523136_SNP [dm3] 3L_15530036_SNP [dm6]	T	C	2.133e^-4	0.98	UPSTREAM obst-H DOWNSTREAM CG43248 INTERGENIC
3L	15523141	3L_15523141_INS [dm3] 3L_15530041_INS [dm6]	A	AA	2.133e^-4	0.98	UPSTREAM obst-H DOWNSTREAM CG43248 INTERGENIC
3R	10052061	3R_10052061_SNP [dm3] 3R_14226339_SNP [dm6]	G	C	2.142e^-4	0.98	NON_SYNONYMOUS_CODING CG9631
3R	25850680	3R_25850680_SNP [dm3] 3R_30024958_SNP [dm6]	G	A	2.142e^-4	0.98	INTRON Axn
2R	6212561	2R_6212561_SNP [dm3] 2R_10325056_SNP [dm6]	G	A	2.150e^-4	0.98	INTRON CG42732
2R	8776870	2R_8776870_SNP [dm3] 2R_12889365_SNP [dm6]	T	C	2.168e^-4	0.98	INTRON vg	regulatory region FlyBase TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5083246	3L_5083246_SNP [dm3] 3L_5083246_SNP [dm6]	T	C	2.171e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5083249	3L_5083249_SNP [dm3] 3L_5083249_SNP [dm6]	T	C	2.171e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5083259	3L_5083259_SNP [dm3] 3L_5083259_SNP [dm6]	T	A	2.171e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5083270	3L_5083270_SNP [dm3] 3L_5083270_SNP [dm6]	G	T	2.171e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5083277	3L_5083277_SNP [dm3] 3L_5083277_SNP [dm6]	T	G	2.171e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8982095	2L_8982095_SNP [dm3] 2L_8982095_SNP [dm6]	T	C	2.175e^-4	0.98	DOWNSTREAM CG18662 INTRON CG13101
2R	13579177	2R_13579177_DEL [dm3] 2R_17691672_DEL [dm6]	CTTTAATATGCTC...	C	2.196e^-4	0.98	DOWNSTREAM HPS4 INTRON swi2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10943167	3L_10943167_SNP [dm3] 3L_10950067_SNP [dm6]	T	G	2.203e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12517325	3L_12517325_SNP [dm3] 3L_12524225_SNP [dm6]	G	C	2.207e^-4	0.98	UPSTREAM ver & 1 other DOWNSTREAM eIF-2beta INTRON ver	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16846560	2R_16846560_SNP [dm3] 2R_20959055_SNP [dm6]	T	C	2.221e^-4	0.98	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18832590	3L_18832590_SNP [dm3] 3L_18839490_SNP [dm6]	T	C	2.244e^-4	0.98	INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17217029	2R_17217029_SNP [dm3] 2R_21329524_SNP [dm6]	G	A	2.244e^-4	0.98	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi28S-3378 & 3 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16690828	X_16690828_SNP [dm3] X_16796795_SNP [dm6]	G	A	2.247e^-4	0.98	DOWNSTREAM CG9132 & 1 other INTERGENIC
3R	17638367	3R_17638367_DEL [dm3] 3R_21812645_DEL [dm6]	TATA	T	2.252e^-4	0.98	INTRON CASK
3R	17638788	3R_17638788_SNP [dm3] 3R_21813066_SNP [dm6]	A	G	2.252e^-4	0.98	INTRON CASK
2L	12641889	2L_12641889_SNP [dm3] 2L_12641889_SNP [dm6]	A	T	2.291e^-4	0.98	INTRON Ref2
2R	20102124	2R_20102124_SNP [dm3] 2R_24214601_SNP [dm6]	A	T	2.302e^-4	0.98	UTR_3_PRIME CG30419
2R	6702526	2R_6702526_SNP [dm3] 2R_10815021_SNP [dm6]	T	G	2.308e^-4	0.98	INTRON CG7222
3L	5361272	3L_5361272_SNP [dm3] 3L_5368172_SNP [dm6]	A	C	2.309e^-4	0.98	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
3L	22013128	3L_22013128_SNP [dm3] 3L_22020028_SNP [dm6]	C	T	2.335e^-4	0.98	INTERGENIC
3L	22013294	3L_22013294_SNP [dm3] 3L_22020194_SNP [dm6]	G	T	2.335e^-4	0.98	INTERGENIC
3L	22013299	3L_22013299_SNP [dm3] 3L_22020199_SNP [dm6]	A	G	2.335e^-4	0.98	INTERGENIC
3L	22016550	3L_22016550_SNP [dm3] 3L_22023450_SNP [dm6]	C	T	2.335e^-4	0.98	INTERGENIC
3L	22030194	3L_22030194_SNP [dm3] 3L_22037094_SNP [dm6]	A	C	2.335e^-4	0.98	INTRON Oct-TyrR	transposable element FlyBase
X	8867593	X_8867593_SNP [dm3] X_8973560_SNP [dm6]	T	C	2.344e^-4	0.98	INTRON rdgA & 2 others
2R	19387091	2R_19387091_SNP [dm3] 2R_23499568_SNP [dm6]	A	G	2.348e^-4	0.98	UPSTREAM CG13558 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	23086494	3R_23086494_SNP [dm3] 3R_27260772_SNP [dm6]	T	C	2.369e^-4	0.98	SYNONYMOUS_CODING woc UPSTREAM woc EXON CR44049	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15780561	3L_15780561_SNP [dm3] 3L_15787461_SNP [dm6]	G	C	2.378e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3231874	2L_3231874_SNP [dm3] 2L_3231874_SNP [dm6]	A	G	2.385e^-4	0.98	INTERGENIC
X	7358007	X_7358007_SNP [dm3] X_7463974_SNP [dm6]	A	T	2.387e^-4	0.98	INTERGENIC
X	7358028	X_7358028_SNP [dm3] X_7463995_SNP [dm6]	G	C	2.387e^-4	0.98	INTERGENIC
3R	8423580	3R_8423580_SNP [dm3] 3R_12597858_SNP [dm6]	A	T	2.388e^-4	0.98	INTERGENIC
3L	10943126	3L_10943126_SNP [dm3] 3L_10950026_SNP [dm6]	G	T	2.394e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10943127	3L_10943127_SNP [dm3] 3L_10950027_SNP [dm6]	T	C	2.394e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23166571	3L_23166571_SNP [dm3] 3L_23173471_SNP [dm6]	A	C	2.395e^-4	0.98	UPSTREAM CG34031 INTERGENIC
3L	22011020	3L_22011020_DEL [dm3] 3L_22017920_DEL [dm6]	CC	C	2.402e^-4	0.98	INTERGENIC
2R	17613615	2R_17613615_INS [dm3] 2R_21726110_INS [dm6]	T	TGATAAATCATGCAAACGCA...	2.420e^-4	0.98	INTERGENIC
2L	19639523	2L_19639523_SNP [dm3] 2L_19639523_SNP [dm6]	G	A	2.421e^-4	0.98	INTRON Lar	TF binding site BDTNP1_TFBS_hb
X	20694100	X_20694100_SNP [dm3] X_20823073_SNP [dm6]	G	T	2.425e^-4	0.98	INTRON shakB & 1 other
X	20694124	X_20694124_SNP [dm3] X_20823097_SNP [dm6]	C	G	2.425e^-4	0.98	INTRON shakB & 1 other
2L	8992408	2L_8992408_SNP [dm3] 2L_8992408_SNP [dm6]	T	A	2.439e^-4	0.98	INTRON CG9555
3L	14687386	3L_14687386_SNP [dm3] 3L_14694286_SNP [dm6]	T	G	2.441e^-4	0.98	INTRON ome
3L	22011449	3L_22011449_SNP [dm3] 3L_22018349_SNP [dm6]	G	C	2.450e^-4	0.98	INTERGENIC
3R	8172771	3R_8172771_SNP [dm3] 3R_12347049_SNP [dm6]	C	A	2.455e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	5131653	2R_5131653_DEL [dm3] 2R_9244148_DEL [dm6]	TAAAC	T	2.474e^-4	0.98	INTRON hig & 1 other
2R	16792171	2R_16792171_SNP [dm3] 2R_20904666_SNP [dm6]	C	T	2.478e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7180197	2R_7180197_SNP [dm3] 2R_11292692_SNP [dm6]	A	G	2.488e^-4	0.98	INTRON dare & 1 other	TF binding site mE1_TFBS_sens
3R	14207342	3R_14207342_SNP [dm3] 3R_18381620_SNP [dm6]	T	A	2.497e^-4	0.98	UTR_3_PRIME CG14309 UPSTREAM CG7675
3R	9740636	3R_9740636_SNP [dm3] 3R_13914914_SNP [dm6]	C	T	2.500e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16297421	2R_16297421_SNP [dm3] 2R_20409916_SNP [dm6]	T	G	2.500e^-4	0.98	INTERGENIC
3L	14277696	3L_14277696_DEL [dm3] 3L_14284596_DEL [dm6]	ATT	A	2.514e^-4	0.98	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18003078	2R_18003078_SNP [dm3] 2R_22115573_SNP [dm6]	A	T	2.525e^-4	0.98	NON_SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
3R	26843891	3R_26843891_SNP [dm3] 3R_31018169_SNP [dm6]	C	T	2.536e^-4	0.98	INTERGENIC
2L	12136200	2L_12136200_SNP [dm3] 2L_12136200_SNP [dm6]	G	A	2.538e^-4	0.98	INTERGENIC
3R	3676778	3R_3676778_SNP [dm3] 3R_7851056_SNP [dm6]	C	T	2.549e^-4	0.98	INTRON CG34384	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10352906	X_10352906_SNP [dm3] X_10458873_SNP [dm6]	A	T	2.573e^-4	0.98	NON_SYNONYMOUS_CODING Or9a
2L	22567620	2L_22567620_SNP [dm3] 2L_22674888_SNP [dm6]	T	C	2.576e^-4	0.98	INTRON CG40006
3R	11290835	3R_11290835_SNP [dm3] 3R_15465113_SNP [dm6]	G	A	2.577e^-4	0.98	INTRON AdamTS-A
2L	10585819	2L_10585819_SNP [dm3] 2L_10585819_SNP [dm6]	A	T	2.586e^-4	0.98	INTRON Trim9
3R	10282004	3R_10282004_SNP [dm3] 3R_14456282_SNP [dm6]	G	A	2.605e^-4	0.98	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8796996	3R_8796996_SNP [dm3] 3R_12971274_SNP [dm6]	G	A	2.634e^-4	0.98	INTRON CG7381
2R	16222377	2R_16222377_SNP [dm3] 2R_20334872_SNP [dm6]	A	G	2.648e^-4	0.98	INTERGENIC
2L	14266258	2L_14266258_SNP [dm3] 2L_14266258_SNP [dm6]	C	T	2.667e^-4	0.98	INTRON wb	TF binding site BDTNP1_TFBS_twi
3L	434919	3L_434919_SNP [dm3] 3L_434919_SNP [dm6]	A	C	2.675e^-4	0.98	UTR_3_PRIME klar UPSTREAM snmRNA:438	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	3710484	3R_3710484_SNP [dm3] 3R_7884762_SNP [dm6]	A	C	2.677e^-4	0.98	INTRON CG17816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17036378	2L_17036378_SNP [dm3] 2L_17036378_SNP [dm6]	T	A	2.678e^-4	0.98	INTERGENIC
3R	9919424	3R_9919424_SNP [dm3] 3R_14093702_SNP [dm6]	T	A	2.681e^-4	0.98	INTRON CCHa1
X	13296869	X_13296869_SNP [dm3] X_13402836_SNP [dm6]	C	T	2.681e^-4	0.98	UTR_5_PRIME CG12725
X	13296873	X_13296873_SNP [dm3] X_13402840_SNP [dm6]	C	T	2.681e^-4	0.98	UTR_5_PRIME CG12725
3R	9893068	3R_9893068_SNP [dm3] 3R_14067346_SNP [dm6]	C	G	2.682e^-4	0.98	INTRON foxo
3L	13593324	3L_13593324_MNP [dm3] 3L_13600224_MNP [dm6]	AGT	GTG	2.683e^-4	0.98	DOWNSTREAM CR45120 INTRON bru-3
2L	7724621	2L_7724621_SNP [dm3] 2L_7724621_SNP [dm6]	A	G	2.688e^-4	0.98	SYNONYMOUS_CODING CG13795
X	16983846	X_16983846_SNP [dm3] X_17089813_SNP [dm6]	T	C	2.709e^-4	0.98	INTERGENIC
3R	9094670	3R_9094670_SNP [dm3] 3R_13268948_SNP [dm6]	T	A	2.709e^-4	0.98	UTR_3_PRIME Su_var_3-7 DOWNSTREAM CG8449	TF binding site mE1_TFBS_HSA
2R	9263155	2R_9263155_SNP [dm3] 2R_13375650_SNP [dm6]	T	A	2.717e^-4	0.98	DOWNSTREAM CG10814 INTERGENIC
2R	19386827	2R_19386827_SNP [dm3] 2R_23499304_SNP [dm6]	C	G	2.727e^-4	0.98	UPSTREAM CG13558 INTERGENIC
3R	26074070	3R_26074070_SNP [dm3] 3R_30248348_SNP [dm6]	T	C	2.745e^-4	0.98	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26074104	3R_26074104_SNP [dm3] 3R_30248382_SNP [dm6]	T	A	2.745e^-4	0.98	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15523126	3L_15523126_SNP [dm3] 3L_15530026_SNP [dm6]	T	A	2.750e^-4	0.98	UPSTREAM obst-H DOWNSTREAM CG43248 INTERGENIC
3R	21959909	3R_21959909_SNP [dm3] 3R_26134187_SNP [dm6]	A	T	2.760e^-4	0.98	INTRON CG6142
3L	22011840	3L_22011840_SNP [dm3] 3L_22018740_SNP [dm6]	T	A	2.767e^-4	0.98	INTERGENIC
2L	5019191	2L_5019191_SNP [dm3] 2L_5019191_SNP [dm6]	C	G	2.774e^-4	0.98	INTRON vkg
3R	7798725	3R_7798725_SNP [dm3] 3R_11973003_SNP [dm6]	A	T	2.778e^-4	0.98	DOWNSTREAM Tango9 & 1 other INTERGENIC
3R	7798726	3R_7798726_INS [dm3] 3R_11973004_INS [dm6]	A	ATG	2.778e^-4	0.98	DOWNSTREAM Tango9 & 1 other INTERGENIC
3R	7798728	3R_7798728_MNP [dm3] 3R_11973006_MNP [dm6]	CTT	GAC	2.778e^-4	0.98	DOWNSTREAM Tango9 & 1 other INTERGENIC
3L	3393012	3L_3393012_SNP [dm3] 3L_3393012_SNP [dm6]	C	G	2.783e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3393015	3L_3393015_SNP [dm3] 3L_3393015_SNP [dm6]	C	A	2.783e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3393041	3L_3393041_SNP [dm3] 3L_3393041_SNP [dm6]	A	T	2.783e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3393050	3L_3393050_DEL [dm3] 3L_3393050_DEL [dm6]	AAACATCAAGGTAGTGGTAA...	A	2.783e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3393554	3L_3393554_SNP [dm3] 3L_3393554_SNP [dm6]	T	G	2.783e^-4	0.98	UPSTREAM CR45737 INTERGENIC
3L	3393579	3L_3393579_SNP [dm3] 3L_3393579_SNP [dm6]	A	G	2.783e^-4	0.98	UPSTREAM CR45737 INTERGENIC
2R	13910335	2R_13910335_SNP [dm3] 2R_18022830_SNP [dm6]	A	G	2.790e^-4	0.98	DOWNSTREAM CG10910 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	21808947	3L_21808947_SNP [dm3] 3L_21815847_SNP [dm6]	A	C	2.791e^-4	0.98	INTRON eg
2L	10631203	2L_10631203_SNP [dm3] 2L_10631203_SNP [dm6]	A	C	2.806e^-4	0.98	UPSTREAM CG7329 INTRON CG7329
2L	7813152	2L_7813152_SNP [dm3] 2L_7813152_SNP [dm6]	A	G	2.827e^-4	0.98	INTRON LanB1	TF binding site BDTNP1_TFBS_twi
2L	14559464	2L_14559464_SNP [dm3] 2L_14559464_SNP [dm6]	C	T	2.827e^-4	0.98	UPSTREAM CR44854 INTERGENIC
3L	487728	3L_487728_SNP [dm3] 3L_487728_SNP [dm6]	G	T	2.828e^-4	0.98	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19882386	3R_19882386_SNP [dm3] 3R_24056664_SNP [dm6]	G	A	2.833e^-4	0.98	SYNONYMOUS_CODING Hsp68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17614569	2R_17614569_SNP [dm3] 2R_21727064_SNP [dm6]	A	C	2.858e^-4	0.98	DOWNSTREAM CR44750 INTERGENIC
2L	594294	2L_594294_SNP [dm3] 2L_594294_SNP [dm6]	C	G	2.864e^-4	0.98	SYNONYMOUS_CODING Gsc UTR_5_PRIME Gsc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7707253	2L_7707253_INS [dm3] 2L_7707253_INS [dm6]	A	AA	2.885e^-4	0.98	DOWNSTREAM CR44990 INTRON Tep3	TF binding site mE1_TFBS_inv
X	17193412	X_17193412_SNP [dm3] X_17299379_SNP [dm6]	C	T	2.894e^-4	0.98	INTRON CG5445 & 1 other
3R	18686409	3R_18686409_SNP [dm3] 3R_22860687_SNP [dm6]	C	A	2.895e^-4	0.98	INTERGENIC
2L	3693352	2L_3693352_SNP [dm3] 2L_3693352_SNP [dm6]	T	C	2.898e^-4	0.98	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
2L	6760412	2L_6760412_SNP [dm3] 2L_6760412_SNP [dm6]	G	C	2.899e^-4	0.98	UPSTREAM CG11322 INTRON CG11321
3L	20596889	3L_20596889_SNP [dm3] 3L_20603789_SNP [dm6]	A	G	2.908e^-4	0.98	INTRON knrl	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19433158	X_19433158_SNP [dm3] X_19539125_SNP [dm6]	T	A	2.919e^-4	0.98	INTRON CG32532
3L	18159642	3L_18159642_INS [dm3] 3L_18166542_INS [dm6]	A	ATT	2.926e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8170310	3R_8170310_SNP [dm3] 3R_12344588_SNP [dm6]	A	G	2.935e^-4	0.98	INTERGENIC
2R	9658046	2R_9658046_SNP [dm3] 2R_13770541_SNP [dm6]	T	A	2.935e^-4	0.98	INTRON Cpr50Ca	TF binding site mE1_TFBS_HSA
3L	12544236	3L_12544236_DEL [dm3] 3L_12551136_DEL [dm6]	CAC	C	2.954e^-4	0.98	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	22049107	3L_22049107_SNP [dm3] 3L_22056007_SNP [dm6]	T	C	2.959e^-4	0.98	INTRON Oct-TyrR
2R	8382713	2R_8382713_SNP [dm3] 2R_12495208_SNP [dm6]	A	G	2.972e^-4	0.98	UPSTREAM s-cup INTRON fdl	TF binding site mE1_TFBS_cad
2L	3934586	2L_3934586_SNP [dm3] 2L_3934586_SNP [dm6]	T	A	2.984e^-4	0.98	INTRON fred
3R	9740675	3R_9740675_SNP [dm3] 3R_13914953_SNP [dm6]	C	T	2.984e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9740676	3R_9740676_SNP [dm3] 3R_13914954_SNP [dm6]	A	T	2.984e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19022055	2R_19022055_SNP [dm3] 2R_23134532_SNP [dm6]	C	T	2.994e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7288988	3L_7288988_SNP [dm3] 3L_7295888_SNP [dm6]	T	C	2.997e^-4	0.98	INTRON unc-13-4A
X	20765876	X_20765876_SNP [dm3] X_20894849_SNP [dm6]	T	A	3.018e^-4	0.98	INTRON shakB	transposable element FlyBase
3R	5969801	3R_5969801_SNP [dm3] 3R_10144079_SNP [dm6]	A	G	3.086e^-4	0.98	UTR_5_PRIME TAF1B UPSTREAM Invadolysin DOWNSTREAM CG42759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22990199	3L_22990199_SNP [dm3] 3L_22997099_SNP [dm6]	A	C	3.087e^-4	0.98	INTERGENIC
3L	5361294	3L_5361294_DEL [dm3] 3L_5368194_DEL [dm6]	TATAAAA	C	3.095e^-4	0.98	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
3L	5647256	3L_5647256_SNP [dm3] 3L_5654156_SNP [dm6]	T	A	3.112e^-4	0.98	UPSTREAM lin-28 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17422560	3L_17422560_SNP [dm3] 3L_17429460_SNP [dm6]	A	G	3.120e^-4	0.98	SYNONYMOUS_CODING CG32174 UTR_3_PRIME frc UPSTREAM CG33052	TF binding site BDTNP1_TFBS_dl
3R	8475207	3R_8475207_SNP [dm3] 3R_12649485_SNP [dm6]	G	A	3.149e^-4	0.98	INTRON Dtg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	2538937	2L_2538937_SNP [dm3] 2L_2538937_SNP [dm6]	C	A	3.153e^-4	0.98	INTERGENIC
X	17477542	X_17477542_SNP [dm3] X_17583509_SNP [dm6]	T	A	3.153e^-4	0.98	INTRON CG12991
X	19029328	X_19029328_SNP [dm3] X_19135295_SNP [dm6]	G	A	3.165e^-4	0.98	UTR_3_PRIME Obp18a DOWNSTREAM RhoGAP18B
2L	18375841	2L_18375841_SNP [dm3] 2L_18375841_SNP [dm6]	C	T	3.182e^-4	0.98	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18003083	2R_18003083_SNP [dm3] 2R_22115578_SNP [dm6]	G	A	3.183e^-4	0.98	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
2R	18003089	2R_18003089_SNP [dm3] 2R_22115584_SNP [dm6]	T	C	3.183e^-4	0.98	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
2L	10657962	2L_10657962_DEL [dm3] 2L_10657962_DEL [dm6]	AA	A	3.188e^-4	0.98	UPSTREAM CG45690 EXON CR45692
3R	17638426	3R_17638426_SNP [dm3] 3R_21812704_SNP [dm6]	A	T	3.200e^-4	0.98	INTRON CASK
3L	754844	3L_754844_SNP [dm3] 3L_754844_SNP [dm6]	C	A	3.201e^-4	0.98	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16898671	2R_16898671_SNP [dm3] 2R_21011166_SNP [dm6]	T	C	3.210e^-4	0.98	SYNONYMOUS_CODING grau UPSTREAM CG9346	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9085654	3R_9085654_SNP [dm3] 3R_13259932_SNP [dm6]	A	G	3.211e^-4	0.98	UPSTREAM CG11686 & 1 other INTERGENIC
3R	9085837	3R_9085837_SNP [dm3] 3R_13260115_SNP [dm6]	C	T	3.211e^-4	0.98	UPSTREAM CG11686 & 1 other INTERGENIC
2L	19699852	2L_19699852_SNP [dm3] 2L_19699852_SNP [dm6]	C	T	3.254e^-4	0.98	SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da
X	3811734	X_3811734_SNP [dm3] X_3917701_SNP [dm6]	G	A	3.255e^-4	0.98	INTRON CG42541
2L	9679289	2L_9679289_SNP [dm3] 2L_9679289_SNP [dm6]	G	C	3.267e^-4	0.98	INTERGENIC
2L	18527917	2L_18527917_SNP [dm3] 2L_18527917_SNP [dm6]	C	T	3.271e^-4	0.98	SYNONYMOUS_CODING CG10211	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26074178	3R_26074178_SNP [dm3] 3R_30248456_SNP [dm6]	G	T	3.276e^-4	0.98	UPSTREAM tRNA:CR31383 DOWNSTREAM tRNA:CR31023 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	22008468	3L_22008468_SNP [dm3] 3L_22015368_SNP [dm6]	A	T	3.283e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5133708	2R_5133708_SNP [dm3] 2R_9246203_SNP [dm6]	A	G	3.287e^-4	0.98	INTRON hig
2R	5133711	2R_5133711_SNP [dm3] 2R_9246206_SNP [dm6]	A	T	3.287e^-4	0.98	INTRON hig
3L	14277701	3L_14277701_SNP [dm3] 3L_14284601_SNP [dm6]	A	C	3.301e^-4	0.98	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14277702	3L_14277702_SNP [dm3] 3L_14284602_SNP [dm6]	T	A	3.301e^-4	0.98	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14277704	3L_14277704_SNP [dm3] 3L_14284604_SNP [dm6]	T	A	3.301e^-4	0.98	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14277705	3L_14277705_SNP [dm3] 3L_14284605_SNP [dm6]	T	C	3.301e^-4	0.98	INTRON fz	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5849375	3L_5849375_SNP [dm3] 3L_5856275_SNP [dm6]	T	C	3.317e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	8703602	2R_8703602_SNP [dm3] 2R_12816097_SNP [dm6]	G	A	3.321e^-4	0.98	INTERGENIC
3R	7870917	3R_7870917_SNP [dm3] 3R_12045195_SNP [dm6]	C	A	3.322e^-4	0.98	INTERGENIC
2L	11666267	2L_11666267_SNP [dm3] 2L_11666267_SNP [dm6]	T	C	3.337e^-4	0.98	DOWNSTREAM CR44481 INTERGENIC
3R	17638765	3R_17638765_SNP [dm3] 3R_21813043_SNP [dm6]	T	C	3.338e^-4	0.98	INTRON CASK
3R	22432927	3R_22432927_SNP [dm3] 3R_26607205_SNP [dm6]	A	C	3.350e^-4	0.98	EXON CR44951
X	11315429	X_11315429_SNP [dm3] X_11421396_SNP [dm6]	G	T	3.371e^-4	0.98	INTERGENIC
2L	14265828	2L_14265828_DEL [dm3] 2L_14265828_DEL [dm6]	TATT	C	3.379e^-4	0.98	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16514059	2R_16514059_SNP [dm3] 2R_20626554_SNP [dm6]	C	T	3.398e^-4	0.98	SYNONYMOUS_CODING CG16742
3R	20559030	3R_20559030_SNP [dm3] 3R_24733308_SNP [dm6]	C	T	3.413e^-4	0.98	INTRON tok
2L	8502675	2L_8502675_SNP [dm3] 2L_8502675_SNP [dm6]	A	C	3.415e^-4	0.98	INTRON Dh31
2L	7803622	2L_7803622_SNP [dm3] 2L_7803622_SNP [dm6]	A	G	3.415e^-4	0.98	UTR_3_PRIME cdc14 DOWNSTREAM cdc14 INTRON cdc14	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4498638	2R_4498638_SNP [dm3] 2R_8611133_SNP [dm6]	C	T	3.416e^-4	0.98	UTR_3_PRIME rgr DOWNSTREAM CG8642	TF binding site mE1_TFBS_cad
3L	1887565	3L_1887565_SNP [dm3] 3L_1887565_SNP [dm6]	A	T	3.426e^-4	0.98	INTRON Tmhs	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	1680884	3L_1680884_SNP [dm3] 3L_1680884_SNP [dm6]	T	A	3.434e^-4	0.98	INTRON CG7991
3R	9017151	3R_9017151_SNP [dm3] 3R_13191429_SNP [dm6]	G	T	3.440e^-4	0.98	UPSTREAM CG8141 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5647275	3L_5647275_SNP [dm3] 3L_5654175_SNP [dm6]	A	G	3.457e^-4	0.98	UPSTREAM lin-28 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15662489	2R_15662489_SNP [dm3] 2R_19774984_SNP [dm6]	T	C	3.500e^-4	0.98	INTERGENIC
3L	3881898	3L_3881898_SNP [dm3] 3L_3881898_SNP [dm6]	A	C	3.506e^-4	0.98	INTERGENIC
3L	8649958	3L_8649958_SNP [dm3] 3L_8656858_SNP [dm6]	A	G	3.514e^-4	0.98	INTERGENIC
2R	16370707	2R_16370707_SNP [dm3] 2R_20483202_SNP [dm6]	G	A	3.524e^-4	0.98	INTERGENIC
3R	9049414	3R_9049414_SNP [dm3] 3R_13223692_SNP [dm6]	A	G	3.536e^-4	0.98	DOWNSTREAM Ace INTRON Ace
3L	7123573	3L_7123573_SNP [dm3] 3L_7130473_SNP [dm6]	T	C	3.544e^-4	0.98	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	5363556	3L_5363556_SNP [dm3] 3L_5370456_SNP [dm6]	A	T	3.546e^-4	0.98	DOWNSTREAM CR44515 & 1 other INTERGENIC
3R	9719389	3R_9719389_SNP [dm3] 3R_13893667_SNP [dm6]	A	C	3.556e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5088343	3L_5088343_SNP [dm3] 3L_5088343_SNP [dm6]	A	T	3.564e^-4	0.98	INTERGENIC
2L	12642259	2L_12642259_SNP [dm3] 2L_12642259_SNP [dm6]	A	G	3.564e^-4	0.98	INTRON Ref2
X	20012865	X_20012865_SNP [dm3] X_20118832_SNP [dm6]	C	A	3.573e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9815901	3L_9815901_SNP [dm3] 3L_9822801_SNP [dm6]	A	T	3.574e^-4	0.98	DOWNSTREAM Ilp5 INTRON CG43897
3L	5083254	3L_5083254_SNP [dm3] 3L_5083254_SNP [dm6]	G	A	3.575e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18442802	2L_18442802_SNP [dm3] 2L_18442802_SNP [dm6]	A	T	3.582e^-4	0.98	SYNONYMOUS_CODING RpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17229190	2R_17229190_SNP [dm3] 2R_21341685_SNP [dm6]	G	A	3.601e^-4	0.98	UTR_3_PRIME dom UPSTREAM CG15666
2R	17229195	2R_17229195_SNP [dm3] 2R_21341690_SNP [dm6]	C	A	3.601e^-4	0.98	UTR_3_PRIME dom UPSTREAM CG15666
2R	18642324	2R_18642324_SNP [dm3] 2R_22754819_SNP [dm6]	G	A	3.610e^-4	0.98	UPSTREAM CG13526 INTRON CG42260
2L	6822725	2L_6822725_SNP [dm3] 2L_6822725_SNP [dm6]	T	G	3.611e^-4	0.98	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	26567027	3R_26567027_INS [dm3] 3R_30741305_INS [dm6]	A	AA	3.618e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9978843	3R_9978843_SNP [dm3] 3R_14153121_SNP [dm6]	G	A	3.624e^-4	0.98	SYNONYMOUS_CODING CG9722 UPSTREAM CG42500 DOWNSTREAM CR44215
3L	16491777	3L_16491777_SNP [dm3] 3L_16498677_SNP [dm6]	T	A	3.628e^-4	0.98	INTRON CG43373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9072983	3R_9072983_SNP [dm3] 3R_13247261_SNP [dm6]	G	A	3.631e^-4	0.98	INTRON Ace
3L	22848499	3L_22848499_SNP [dm3] 3L_22855399_SNP [dm6]	T	G	3.643e^-4	0.98	NON_SYNONYMOUS_CODING CG32459 DOWNSTREAM CR43426
2L	10873638	2L_10873638_SNP [dm3] 2L_10873638_SNP [dm6]	G	A	3.644e^-4	0.98	INTERGENIC
X	19029393	X_19029393_SNP [dm3] X_19135360_SNP [dm6]	G	T	3.662e^-4	0.98	UTR_3_PRIME Obp18a DOWNSTREAM RhoGAP18B
X	19029992	X_19029992_SNP [dm3] X_19135959_SNP [dm6]	G	A	3.662e^-4	0.98	UPSTREAM Obp18a DOWNSTREAM RhoGAP18B INTERGENIC	regulatory region REDfly_CRMs
3L	22031783	3L_22031783_SNP [dm3] 3L_22038683_SNP [dm6]	A	G	3.679e^-4	0.98	INTRON Oct-TyrR
3L	22033562	3L_22033562_SNP [dm3] 3L_22040462_SNP [dm6]	C	T	3.679e^-4	0.98	INTRON Oct-TyrR
2L	12857897	2L_12857897_SNP [dm3] 2L_12857897_SNP [dm6]	A	G	3.687e^-4	0.98	INTERGENIC
2R	14171938	2R_14171938_SNP [dm3] 2R_18284433_SNP [dm6]	T	C	3.690e^-4	0.98	SYNONYMOUS_CODING sbb DOWNSTREAM sbb	TF binding site mE1_TFBS_cad
3R	7791793	3R_7791793_SNP [dm3] 3R_11966071_SNP [dm6]	A	C	3.698e^-4	0.98	SYNONYMOUS_CODING CG12213	TF binding site mE1_TFBS_cad
3L	1475265	3L_1475265_DEL [dm3] 3L_1475265_DEL [dm6]	AA	A	3.699e^-4	0.98	UPSTREAM Ptp61F DOWNSTREAM stet INTERGENIC
2R	9768093	2R_9768093_SNP [dm3] 2R_13880588_SNP [dm6]	G	A	3.704e^-4	0.98	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3L	3393503	3L_3393503_SNP [dm3] 3L_3393503_SNP [dm6]	A	G	3.708e^-4	0.98	UPSTREAM CR45737 INTERGENIC
3L	9902135	3L_9902135_INS [dm3] 3L_9909035_INS [dm6]	T	TTGT	3.712e^-4	0.98	INTRON CG34356
2L	5398229	2L_5398229_SNP [dm3] 2L_5398229_SNP [dm6]	A	T	3.724e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12517341	3L_12517341_SNP [dm3] 3L_12524241_SNP [dm6]	T	A	3.738e^-4	0.98	UPSTREAM ver & 1 other DOWNSTREAM eIF-2beta INTRON ver	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5019187	2L_5019187_SNP [dm3] 2L_5019187_SNP [dm6]	A	T	3.739e^-4	0.98	INTRON vkg
2L	14215471	2L_14215471_SNP [dm3] 2L_14215471_SNP [dm6]	G	A	3.744e^-4	0.98	INTRON Dyrk2
2L	14215367	2L_14215367_SNP [dm3] 2L_14215367_SNP [dm6]	C	G	3.744e^-4	0.98	INTRON Dyrk2
3R	11507982	3R_11507982_SNP [dm3] 3R_15682260_SNP [dm6]	G	A	3.747e^-4	0.98	INTRON pxb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5903884	X_5903884_SNP [dm3] X_6009851_SNP [dm6]	C	T	3.762e^-4	0.98	INTRON mab-21
2L	7080281	2L_7080281_SNP [dm3] 2L_7080281_SNP [dm6]	G	C	3.773e^-4	0.98	UPSTREAM CR44611 INTRON Pvf2
3R	7871091	3R_7871091_SNP [dm3] 3R_12045369_SNP [dm6]	T	A	3.778e^-4	0.98	INTERGENIC
3R	9102308	3R_9102308_SNP [dm3] 3R_13276586_SNP [dm6]	C	T	3.823e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	14530724	2L_14530724_SNP [dm3] 2L_14530724_SNP [dm6]	T	C	3.825e^-4	0.98	UPSTREAM tRNA:G3:35Bd DOWNSTREAM tRNA:G3:35Be INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	22680865	2L_22680865_SNP [dm3] 2L_22788133_SNP [dm6]	G	A	3.828e^-4	0.98	INTERGENIC
2R	15662461	2R_15662461_SNP [dm3] 2R_19774956_SNP [dm6]	G	T	3.841e^-4	0.98	INTERGENIC
3L	9831395	3L_9831395_SNP [dm3] 3L_9838295_SNP [dm6]	C	A	3.841e^-4	0.98	SYNONYMOUS_CODING Cdk8 DOWNSTREAM RasGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	26564564	3R_26564564_SNP [dm3] 3R_30738842_SNP [dm6]	C	A	3.848e^-4	0.98	INTERGENIC
3L	5815133	3L_5815133_SNP [dm3] 3L_5822033_SNP [dm6]	C	G	3.886e^-4	0.98	INTRON vn
2R	17172105	2R_17172105_SNP [dm3] 2R_21284600_SNP [dm6]	C	T	3.893e^-4	0.98	SPLICE_SITE_REGION MFS16 DOWNSTREAM CG10505 INTRON MFS16
3L	5361065	3L_5361065_SNP [dm3] 3L_5367965_SNP [dm6]	A	G	3.905e^-4	0.98	UTR_5_PRIME CG10635 DOWNSTREAM Membrin
3L	12683596	3L_12683596_SNP [dm3] 3L_12690496_SNP [dm6]	A	C	3.914e^-4	0.98	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10330444	2L_10330444_SNP [dm3] 2L_10330444_SNP [dm6]	G	A	3.915e^-4	0.98	SYNONYMOUS_CODING CG5375	TF binding site mE1_TFBS_sens
3L	22011036	3L_22011036_SNP [dm3] 3L_22017936_SNP [dm6]	C	A	3.933e^-4	0.98	INTERGENIC
3L	22013402	3L_22013402_SNP [dm3] 3L_22020302_SNP [dm6]	T	A	3.933e^-4	0.98	INTERGENIC
3L	22016160	3L_22016160_SNP [dm3] 3L_22023060_SNP [dm6]	G	T	3.933e^-4	0.98	INTERGENIC
3L	22016468	3L_22016468_SNP [dm3] 3L_22023368_SNP [dm6]	A	C	3.933e^-4	0.98	INTERGENIC
3L	22018952	3L_22018952_SNP [dm3] 3L_22025852_SNP [dm6]	A	C	3.933e^-4	0.98	DOWNSTREAM CG7140 INTERGENIC
3L	22020247	3L_22020247_SNP [dm3] 3L_22027147_SNP [dm6]	T	C	3.933e^-4	0.98	SYNONYMOUS_CODING CG7140	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22029106	3L_22029106_SNP [dm3] 3L_22036006_SNP [dm6]	A	G	3.933e^-4	0.98	INTRON Oct-TyrR
3L	22030571	3L_22030571_SNP [dm3] 3L_22037471_SNP [dm6]	C	T	3.933e^-4	0.98	INTRON Oct-TyrR
3L	5647280	3L_5647280_SNP [dm3] 3L_5654180_SNP [dm6]	A	C	3.936e^-4	0.98	UPSTREAM lin-28 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5647291	3L_5647291_SNP [dm3] 3L_5654191_SNP [dm6]	T	G	3.936e^-4	0.98	UPSTREAM lin-28 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	15930381	2L_15930381_SNP [dm3] 2L_15930381_SNP [dm6]	C	G	3.937e^-4	0.98	INTRON beat-Ib
X	20766040	X_20766040_DEL [dm3] X_20895013_DEL [dm6]	TGCC	A	3.944e^-4	0.98	INTRON shakB	transposable element FlyBase
X	20766101	X_20766101_DEL [dm3] X_20895074_DEL [dm6]	AATCACTTGTA...	A	3.944e^-4	0.98	INTRON shakB
X	20766126	X_20766126_INS [dm3] X_20895099_INS [dm6]	C	CC	3.944e^-4	0.98	INTRON shakB
2L	12311464	2L_12311464_SNP [dm3] 2L_12311464_SNP [dm6]	C	G	3.947e^-4	0.98	UTR_3_PRIME aret DOWNSTREAM aret INTRON aret
3L	22009742	3L_22009742_SNP [dm3] 3L_22016642_SNP [dm6]	T	G	3.960e^-4	0.98	INTERGENIC
3L	22012197	3L_22012197_SNP [dm3] 3L_22019097_SNP [dm6]	A	T	3.960e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11530887	3L_11530887_SNP [dm3] 3L_11537787_SNP [dm6]	T	G	3.962e^-4	0.98	INTRON Mob2
2L	10873589	2L_10873589_SNP [dm3] 2L_10873589_SNP [dm6]	A	T	3.968e^-4	0.98	INTERGENIC
3R	7825159	3R_7825159_SNP [dm3] 3R_11999437_SNP [dm6]	G	A	3.999e^-4	0.98	SPLICE_SITE_REGION Ect3 UTR_5_PRIME Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7825161	3R_7825161_SNP [dm3] 3R_11999439_SNP [dm6]	G	A	3.999e^-4	0.98	SPLICE_SITE_REGION Ect3 UTR_5_PRIME Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1613092	3L_1613092_SNP [dm3] 3L_1613092_SNP [dm6]	A	G	4.013e^-4	0.98	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other
3R	26183066	3R_26183066_SNP [dm3] 3R_30357344_SNP [dm6]	A	G	4.024e^-4	0.98	UPSTREAM hdc INTRON hdc
3L	18159892	3L_18159892_SNP [dm3] 3L_18166792_SNP [dm6]	C	G	4.028e^-4	0.98	DOWNSTREAM W INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13416716	2R_13416716_SNP [dm3] 2R_17529211_SNP [dm6]	C	G	4.030e^-4	0.98	INTRON Patronin
3R	5970395	3R_5970395_SNP [dm3] 3R_10144673_SNP [dm6]	C	T	4.045e^-4	0.98	UTR_5_PRIME Invadolysin UPSTREAM TAF1B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3392382	3L_3392382_SNP [dm3] 3L_3392382_SNP [dm6]	T	G	4.056e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3393174	3L_3393174_SNP [dm3] 3L_3393174_SNP [dm6]	T	A	4.056e^-4	0.98	UPSTREAM CR45737 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2840230	2L_2840230_SNP [dm3] 2L_2840230_SNP [dm6]	T	C	4.063e^-4	0.98	UTR_5_PRIME CG2975 DOWNSTREAM Cpr23B INTRON CR45342
2L	17364822	2L_17364822_SNP [dm3] 2L_17364822_SNP [dm6]	A	G	4.064e^-4	0.98	DOWNSTREAM CG31804 INTERGENIC
2R	9274136	2R_9274136_SNP [dm3] 2R_13386631_SNP [dm6]	T	C	4.077e^-4	0.98	INTERGENIC
2L	6665659	2L_6665659_SNP [dm3] 2L_6665659_SNP [dm6]	T	C	4.080e^-4	0.98	SYNONYMOUS_CODING cup UTR_5_PRIME CG34310 DOWNSTREAM Galt	TF binding site mE1_TFBS_chinmo
3L	5647307	3L_5647307_SNP [dm3] 3L_5654207_SNP [dm6]	T	C	4.118e^-4	0.98	UPSTREAM lin-28 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	15747024	3R_15747024_SNP [dm3] 3R_19921302_SNP [dm6]	T	G	4.120e^-4	0.98	DOWNSTREAM CG4770 & 1 other EXON CR43282
2L	10454297	2L_10454297_SNP [dm3] 2L_10454297_SNP [dm6]	C	T	4.121e^-4	0.98	SYNONYMOUS_CODING CG5322
3R	6413976	3R_6413976_SNP [dm3] 3R_10588254_SNP [dm6]	T	C	4.131e^-4	0.98	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18821444	2R_18821444_SNP [dm3] 2R_22933921_SNP [dm6]	G	T	4.134e^-4	0.98	UTR_5_PRIME CG3788 UPSTREAM CG3788 DOWNSTREAM CG3800	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4753775	2L_4753775_SNP [dm3] 2L_4753775_SNP [dm6]	A	T	4.145e^-4	0.98	INTRON CG15630
2R	12276629	2R_12276629_SNP [dm3] 2R_16389124_SNP [dm6]	T	A	4.151e^-4	0.98	INTRON Sema-2b
3R	19407521	3R_19407521_SNP [dm3] 3R_23581799_SNP [dm6]	A	C	4.155e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14705310	3R_14705310_SNP [dm3] 3R_18879588_SNP [dm6]	C	T	4.158e^-4	0.98	INTERGENIC
2R	17266704	2R_17266704_SNP [dm3] 2R_21379199_SNP [dm6]	C	T	4.161e^-4	0.98	UTR_5_PRIME cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17266898	2R_17266898_SNP [dm3] 2R_21379393_SNP [dm6]	T	C	4.161e^-4	0.98	UTR_5_PRIME cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12719935	3L_12719935_SNP [dm3] 3L_12726835_SNP [dm6]	G	A	4.165e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18159649	3L_18159649_SNP [dm3] 3L_18166549_SNP [dm6]	T	A	4.170e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7424688	3L_7424688_SNP [dm3] 3L_7431588_SNP [dm6]	T	A	4.171e^-4	0.98	INTRON CG42458
X	17477528	X_17477528_SNP [dm3] X_17583495_SNP [dm6]	T	A	4.194e^-4	0.98	INTRON CG12991
2R	14596472	2R_14596472_SNP [dm3] 2R_18708967_SNP [dm6]	A	G	4.202e^-4	0.98	SYNONYMOUS_CODING CG15087 DOWNSTREAM CG15073
2L	8925812	2L_8925812_SNP [dm3] 2L_8925812_SNP [dm6]	T	C	4.217e^-4	0.98	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20765980	X_20765980_SNP [dm3] X_20894953_SNP [dm6]	A	T	4.233e^-4	0.98	INTRON shakB	transposable element FlyBase
2L	9162968	2L_9162968_INS [dm3] 2L_9162968_INS [dm6]	T	TGTATGT	4.233e^-4	0.98	INTRON CG32982
3R	19742306	3R_19742306_SNP [dm3] 3R_23916584_SNP [dm6]	A	G	4.234e^-4	0.98	INTRON sba
3L	5815104	3L_5815104_SNP [dm3] 3L_5822004_SNP [dm6]	C	A	4.238e^-4	0.98	INTRON vn
3L	3625018	3L_3625018_SNP [dm3] 3L_3625018_SNP [dm6]	G	A	4.238e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11731735	2L_11731735_SNP [dm3] 2L_11731735_SNP [dm6]	C	A	4.286e^-4	0.98	INTERGENIC
3L	13593450	3L_13593450_SNP [dm3] 3L_13600350_SNP [dm6]	G	A	4.289e^-4	0.98	DOWNSTREAM CR45120 INTRON bru-3
3R	10689366	3R_10689366_SNP [dm3] 3R_14863644_SNP [dm6]	T	A	4.309e^-4	0.98	INTRON btsz
2R	9052618	2R_9052618_SNP [dm3] 2R_13165113_SNP [dm6]	T	G	4.328e^-4	0.98	INTRON GLaz
2R	18802315	2R_18802315_SNP [dm3] 2R_22914792_SNP [dm6]	A	G	4.335e^-4	0.98	UTR_3_PRIME nahoda INTRON nahoda
2R	17230284	2R_17230284_SNP [dm3] 2R_21342779_SNP [dm6]	A	C	4.343e^-4	0.98	DOWNSTREAM dom INTRON CG15666
2L	14011179	2L_14011179_SNP [dm3] 2L_14011179_SNP [dm6]	T	C	4.344e^-4	0.98	UPSTREAM tRNA:Q:34E INTERGENIC
3L	10369318	3L_10369318_SNP [dm3] 3L_10376218_SNP [dm6]	A	T	4.379e^-4	0.98	INTERGENIC
3R	10583608	3R_10583608_SNP [dm3] 3R_14757886_SNP [dm6]	G	A	4.429e^-4	0.98	INTRON jvl
3L	22011458	3L_22011458_SNP [dm3] 3L_22018358_SNP [dm6]	C	T	4.430e^-4	0.98	INTERGENIC
X	11315403	X_11315403_SNP [dm3] X_11421370_SNP [dm6]	A	C	4.449e^-4	0.98	INTERGENIC
2R	9119738	2R_9119738_SNP [dm3] 2R_13232233_SNP [dm6]	T	C	4.460e^-4	0.98	SYNONYMOUS_CODING CG4670 DOWNSTREAM fsd	TF binding site mE1_TFBS_cad
3L	3522505	3L_3522505_SNP [dm3] 3L_3522505_SNP [dm6]	T	C	4.482e^-4	0.98	DOWNSTREAM CR45043 INTRON Eip63E
3L	3522507	3L_3522507_SNP [dm3] 3L_3522507_SNP [dm6]	G	A	4.482e^-4	0.98	DOWNSTREAM CR45043 INTRON Eip63E
3R	10856503	3R_10856503_SNP [dm3] 3R_15030781_SNP [dm6]	A	C	4.491e^-4	0.98	INTERGENIC
3L	7290012	3L_7290012_SNP [dm3] 3L_7296912_SNP [dm6]	G	A	4.498e^-4	0.98	INTRON unc-13-4A
2R	8175818	2R_8175818_SNP [dm3] 2R_12288313_SNP [dm6]	T	C	4.506e^-4	0.98	INTRON CG42700
3L	8626276	3L_8626276_SNP [dm3] 3L_8633176_SNP [dm6]	C	A	4.524e^-4	0.98	SYNONYMOUS_CODING Cdc6 INTRON Zasp66	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5083260	3L_5083260_SNP [dm3] 3L_5083260_SNP [dm6]	G	T	4.525e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17614578	2R_17614578_SNP [dm3] 2R_21727073_SNP [dm6]	T	A	4.526e^-4	0.98	DOWNSTREAM CR44750 INTERGENIC
3L	20632152	3L_20632152_SNP [dm3] 3L_20639052_SNP [dm6]	T	G	4.527e^-4	0.98	NON_SYNONYMOUS_CODING CG13251	TF binding site mE1_TFBS_chinmo
2R	12274244	2R_12274244_SNP [dm3] 2R_16386739_SNP [dm6]	A	G	4.531e^-4	0.98	UTR_5_PRIME Sema-2b DOWNSTREAM CG43187	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	14515011	2L_14515011_SNP [dm3] 2L_14515011_SNP [dm6]	A	G	4.536e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8849551	3L_8849551_SNP [dm3] 3L_8856451_SNP [dm6]	T	G	4.538e^-4	0.98	INTRON dally
2R	19715545	2R_19715545_INS [dm3] 2R_23828022_INS [dm6]	A	AA	4.545e^-4	0.98	INTRON CG5549
3L	18103362	3L_18103362_SNP [dm3] 3L_18110262_SNP [dm6]	G	A	4.548e^-4	0.98	SYNONYMOUS_CODING mus304 UPSTREAM CG5147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	8620857	2R_8620857_SNP [dm3] 2R_12733352_SNP [dm6]	A	T	4.550e^-4	0.98	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6756702	3L_6756702_DEL [dm3] 3L_6763602_DEL [dm6]	GGAGAAACT	G	4.558e^-4	0.98	UPSTREAM CG32392 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	21981901	3R_21981901_SNP [dm3] 3R_26156179_SNP [dm6]	C	G	4.562e^-4	0.98	INTERGENIC
3L	21683408	3L_21683408_SNP [dm3] 3L_21690308_SNP [dm6]	T	A	4.590e^-4	0.98	DOWNSTREAM CG32447 INTERGENIC
3L	11570093	3L_11570093_SNP [dm3] 3L_11576993_SNP [dm6]	C	A	4.614e^-4	0.98	START_GAINED CG33489 UTR_5_PRIME CG33489 UPSTREAM CG33489 DOWNSTREAM CG33271
3R	5309174	3R_5309174_SNP [dm3] 3R_9483452_SNP [dm6]	C	G	4.618e^-4	0.98	INTRON CG16779 EXON CR45203
3R	15839821	3R_15839821_SNP [dm3] 3R_20014099_SNP [dm6]	C	G	4.640e^-4	0.98	UPSTREAM CG4836 & 1 other INTRON CG4836	TF binding site mE1_TFBS_cad
2L	12590186	2L_12590186_SNP [dm3] 2L_12590186_SNP [dm6]	T	C	4.640e^-4	0.98	INTRON nub
2L	12865257	2L_12865257_SNP [dm3] 2L_12865257_SNP [dm6]	A	C	4.642e^-4	0.98	INTERGENIC
2R	7180523	2R_7180523_SNP [dm3] 2R_11293018_SNP [dm6]	C	G	4.644e^-4	0.98	UTR_5_PRIME dare UTR_3_PRIME CG30033 DOWNSTREAM CG18336
3L	16923430	3L_16923430_SNP [dm3] 3L_16930330_SNP [dm6]	G	A	4.662e^-4	0.98	SYNONYMOUS_CODING CG11905 DOWNSTREAM CG11905 INTRON CG11905	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18360909	3L_18360909_SNP [dm3] 3L_18367809_SNP [dm6]	A	C	4.672e^-4	0.98	INTERGENIC
3R	15481474	3R_15481474_SNP [dm3] 3R_19655752_SNP [dm6]	A	G	4.678e^-4	0.98	INTRON CG6184	TF binding site mE1_TFBS_cad
3L	16154343	3L_16154343_SNP [dm3] 3L_16161243_SNP [dm6]	T	G	4.684e^-4	0.98	INTRON CG5151
3L	16154685	3L_16154685_SNP [dm3] 3L_16161585_SNP [dm6]	T	G	4.684e^-4	0.98	INTRON CG5151	TF binding site mE1_TFBS_HSA
3R	19918071	3R_19918071_SNP [dm3] 3R_24092349_SNP [dm6]	C	A	4.684e^-4	0.98	INTRON 4EHP	TF binding site BDTNP1_TFBS_dl
3R	26077303	3R_26077303_SNP [dm3] 3R_30251581_SNP [dm6]	T	A	4.690e^-4	0.98	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	1679847	3L_1679847_SNP [dm3] 3L_1679847_SNP [dm6]	G	C	4.711e^-4	0.98	INTRON CG7991
2L	5397563	2L_5397563_SNP [dm3] 2L_5397563_SNP [dm6]	G	A	4.712e^-4	0.98	INTERGENIC
2R	5129638	2R_5129638_SNP [dm3] 2R_9242133_SNP [dm6]	A	G	4.719e^-4	0.98	UTR_3_PRIME Cyp4p1 UPSTREAM Cyp4p3 INTRON hig
2R	5129741	2R_5129741_SNP [dm3] 2R_9242236_SNP [dm6]	A	G	4.719e^-4	0.98	UPSTREAM Cyp4p3 DOWNSTREAM Cyp4p1 INTRON hig
X	11315367	X_11315367_SNP [dm3] X_11421334_SNP [dm6]	G	A	4.720e^-4	0.98	INTERGENIC
2R	13579103	2R_13579103_SNP [dm3] 2R_17691598_SNP [dm6]	G	A	4.737e^-4	0.98	SYNONYMOUS_CODING swi2 DOWNSTREAM HPS4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	13418760	3L_13418760_SNP [dm3] 3L_13425660_SNP [dm6]	C	G	4.737e^-4	0.98	UTR_5_PRIME CG14106 DOWNSTREAM CG14105
X	15287795	X_15287795_SNP [dm3] X_15393762_SNP [dm6]	A	T	4.770e^-4	0.98	NON_SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
3L	8164207	3L_8164207_SNP [dm3] 3L_8171107_SNP [dm6]	C	T	4.774e^-4	0.98	SPLICE_SITE_REGION RecQ4 INTRON RecQ4	TF binding site BDTNP1_TFBS_twi
3R	9096575	3R_9096575_SNP [dm3] 3R_13270853_SNP [dm6]	G	A	4.786e^-4	0.98	SYNONYMOUS_CODING CG8449 DOWNSTREAM Su_var_3-7
2L	14915693	2L_14915693_INS [dm3] 2L_14915693_INS [dm6]	A	AT	4.800e^-4	0.98	INTRON CG42313
2R	18799941	2R_18799941_SNP [dm3] 2R_22912418_SNP [dm6]	C	G	4.806e^-4	0.98	NON_SYNONYMOUS_CODING nahoda SPLICE_SITE_REGION nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	17431152	3L_17431152_SNP [dm3] 3L_17438052_SNP [dm6]	A	T	4.824e^-4	0.98	DOWNSTREAM CG32176 INTERGENIC
3R	8599619	3R_8599619_SNP [dm3] 3R_12773897_SNP [dm6]	A	G	4.868e^-4	0.98	INTRON beat-Vc
3R	10395247	3R_10395247_SNP [dm3] 3R_14569525_SNP [dm6]	T	A	4.878e^-4	0.98	SYNONYMOUS_CODING Cys UPSTREAM CG8066 DOWNSTREAM CG7987 EXON CR44095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1260259	3L_1260259_SNP [dm3] 3L_1260259_SNP [dm6]	T	C	4.880e^-4	0.98	INTRON CG9134
3R	13802777	3R_13802777_SNP [dm3] 3R_17977055_SNP [dm6]	T	A	4.890e^-4	0.98	INTRON cpo
3R	9655187	3R_9655187_SNP [dm3] 3R_13829465_SNP [dm6]	A	C	4.893e^-4	0.98	INTERGENIC
2R	16297159	2R_16297159_SNP [dm3] 2R_20409654_SNP [dm6]	G	T	4.917e^-4	0.98	INTERGENIC
3R	16023048	3R_16023048_SNP [dm3] 3R_20197326_SNP [dm6]	T	C	4.919e^-4	0.98	INTERGENIC
3R	16023049	3R_16023049_SNP [dm3] 3R_20197327_SNP [dm6]	C	A	4.919e^-4	0.98	INTERGENIC
3R	9915700	3R_9915700_SNP [dm3] 3R_14089978_SNP [dm6]	T	A	4.946e^-4	0.98	UPSTREAM Npc2b INTRON Npc2b
2L	14001442	2L_14001442_SNP [dm3] 2L_14001442_SNP [dm6]	C	T	4.949e^-4	0.98	UPSTREAM rk INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	11890043	2L_11890043_SNP [dm3] 2L_11890043_SNP [dm6]	A	T	4.951e^-4	0.98	INTRON Pde1c
3R	15522405	3R_15522405_SNP [dm3] 3R_19696683_SNP [dm6]	C	T	4.974e^-4	0.98	INTRON Naam
3R	6428451	3R_6428451_SNP [dm3] 3R_10602729_SNP [dm6]	A	C	4.976e^-4	0.98	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6113361	X_6113361_SNP [dm3] X_6219328_SNP [dm6]	C	G	4.986e^-4	0.98	UPSTREAM Efr & 1 other INTERGENIC
3L	3392755	3L_3392755_SNP [dm3] 3L_3392755_SNP [dm6]	T	C	4.989e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3393196	3L_3393196_SNP [dm3] 3L_3393196_SNP [dm6]	G	A	4.989e^-4	0.98	UPSTREAM CR45737 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8984675	2L_8984675_SNP [dm3] 2L_8984675_SNP [dm6]	A	G	5.032e^-4	0.98	INTRON CG13101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16077819	2L_16077819_SNP [dm3] 2L_16077819_SNP [dm6]	T	C	5.033e^-4	0.98	INTRON beat-Ia
2L	7807928	2L_7807928_SNP [dm3] 2L_7807928_SNP [dm6]	C	T	5.049e^-4	0.98	INTRON cdc14	TF binding site mE1_TFBS_HSA
X	1040185	X_1040185_SNP [dm3] X_1146152_SNP [dm6]	T	C	5.086e^-4	0.98	DOWNSTREAM CG14628 INTERGENIC
2L	7721551	2L_7721551_SNP [dm3] 2L_7721551_SNP [dm6]	A	C	5.088e^-4	0.98	NON_SYNONYMOUS_CODING CG13794
3L	8164271	3L_8164271_SNP [dm3] 3L_8171171_SNP [dm6]	A	G	5.092e^-4	0.98	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi
3L	487585	3L_487585_SNP [dm3] 3L_487585_SNP [dm6]	C	A	5.101e^-4	0.98	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13579052	2R_13579052_SNP [dm3] 2R_17691547_SNP [dm6]	G	A	5.125e^-4	0.98	SYNONYMOUS_CODING swi2 DOWNSTREAM HPS4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14559575	2L_14559575_SNP [dm3] 2L_14559575_SNP [dm6]	G	T	5.136e^-4	0.98	UPSTREAM CR44854 INTERGENIC
X	13269598	X_13269598_SNP [dm3] X_13375565_SNP [dm6]	G	T	5.138e^-4	0.98	INTRON CG1640	TF binding site mE1_TFBS_inv
3L	15780607	3L_15780607_SNP [dm3] 3L_15787507_SNP [dm6]	T	A	5.149e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr
2R	18792131	2R_18792131_SNP [dm3] 2R_22904608_SNP [dm6]	T	C	5.160e^-4	0.98	INTRON nahoda
3R	10857038	3R_10857038_SNP [dm3] 3R_15031316_SNP [dm6]	G	A	5.170e^-4	0.98	INTERGENIC
2L	855241	2L_855241_SNP [dm3] 2L_855241_SNP [dm6]	T	C	5.190e^-4	0.98	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9051907	3R_9051907_SNP [dm3] 3R_13226185_SNP [dm6]	A	T	5.202e^-4	0.98	UTR_3_PRIME Ace INTRON Ace
3L	18158179	3L_18158179_SNP [dm3] 3L_18165079_SNP [dm6]	T	C	5.209e^-4	0.98	INTERGENIC
2R	18146220	2R_18146220_SNP [dm3] 2R_22258715_SNP [dm6]	G	T	5.214e^-4	0.98	INTRON dve
2R	18146256	2R_18146256_SNP [dm3] 2R_22258751_SNP [dm6]	T	A	5.214e^-4	0.98	INTRON dve
3L	12347674	3L_12347674_SNP [dm3] 3L_12354574_SNP [dm6]	G	C	5.232e^-4	0.98	INTERGENIC
2R	9776550	2R_9776550_SNP [dm3] 2R_13889045_SNP [dm6]	T	A	5.282e^-4	0.98	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_HSA
3R	23088256	3R_23088256_SNP [dm3] 3R_27262534_SNP [dm6]	C	T	5.285e^-4	0.98	DOWNSTREAM CR44049 INTRON woc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1680826	3L_1680826_SNP [dm3] 3L_1680826_SNP [dm6]	C	A	5.295e^-4	0.98	INTRON CG7991
2L	11739807	2L_11739807_SNP [dm3] 2L_11739807_SNP [dm6]	G	A	5.301e^-4	0.98	INTRON Vha100-5
2L	14920815	2L_14920815_SNP [dm3] 2L_14920815_SNP [dm6]	G	A	5.313e^-4	0.98	INTRON CG42313
2R	18639650	2R_18639650_INS [dm3] 2R_22752145_INS [dm6]	C	CTCAG	5.322e^-4	0.98	INTRON CG42260
3L	16822931	3L_16822931_SNP [dm3] 3L_16829831_SNP [dm6]	C	T	5.326e^-4	0.98	UPSTREAM CG13024 INTERGENIC
3R	7871006	3R_7871006_SNP [dm3] 3R_12045284_SNP [dm6]	G	T	5.327e^-4	0.98	INTERGENIC
3L	9915456	3L_9915456_SNP [dm3] 3L_9922356_SNP [dm6]	T	G	5.335e^-4	0.98	INTRON CG34356
2L	14559571	2L_14559571_SNP [dm3] 2L_14559571_SNP [dm6]	G	A	5.345e^-4	0.98	UPSTREAM CR44854 INTERGENIC
3R	9091355	3R_9091355_SNP [dm3] 3R_13265633_SNP [dm6]	C	T	5.345e^-4	0.98	INTRON Su_var_3-7	TF binding site mE1_TFBS_sens
3R	6130082	3R_6130082_SNP [dm3] 3R_10304360_SNP [dm6]	G	C	5.347e^-4	0.98	NON_SYNONYMOUS_CODING CG43143
3R	6130086	3R_6130086_SNP [dm3] 3R_10304364_SNP [dm6]	A	G	5.347e^-4	0.98	SYNONYMOUS_CODING CG43143
2L	16177090	2L_16177090_SNP [dm3] 2L_16177090_SNP [dm6]	A	G	5.353e^-4	0.98	INTRON Ca-alpha1D
X	4988933	X_4988933_SNP [dm3] X_5094900_SNP [dm6]	T	A	5.356e^-4	0.98	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14530699	2L_14530699_SNP [dm3] 2L_14530699_SNP [dm6]	T	G	5.357e^-4	0.98	UPSTREAM tRNA:G3:35Bd DOWNSTREAM tRNA:G3:35Be INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18492086	2L_18492086_SNP [dm3] 2L_18492086_SNP [dm6]	A	G	5.364e^-4	0.98	SYNONYMOUS_CODING kon	TF binding site mE1_TFBS_sens
2L	8326051	2L_8326051_DEL [dm3] 2L_8326051_DEL [dm6]	GT	A	5.382e^-4	0.98	UPSTREAM CG7781 INTERGENIC
2L	16108837	2L_16108837_SNP [dm3] 2L_16108837_SNP [dm6]	T	C	5.390e^-4	0.98	INTERGENIC
3R	26183069	3R_26183069_SNP [dm3] 3R_30357347_SNP [dm6]	A	G	5.406e^-4	0.98	UPSTREAM hdc INTRON hdc
2L	4329102	2L_4329102_SNP [dm3] 2L_4329102_SNP [dm6]	T	C	5.413e^-4	0.98	SYNONYMOUS_CODING CG16857	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6133458	X_6133458_SNP [dm3] X_6239425_SNP [dm6]	C	T	5.414e^-4	0.98	SYNONYMOUS_CODING CG14445
X	4567938	X_4567938_SNP [dm3] X_4673905_SNP [dm6]	C	T	5.436e^-4	0.98	INTRON rap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8381204	2R_8381204_SNP [dm3] 2R_12493699_SNP [dm6]	C	T	5.446e^-4	0.98	INTRON fdl
3R	7871198	3R_7871198_SNP [dm3] 3R_12045476_SNP [dm6]	A	G	5.446e^-4	0.98	INTERGENIC
X	19179493	X_19179493_SNP [dm3] X_19285460_SNP [dm6]	G	T	5.461e^-4	0.98	UPSTREAM CG8034 INTRON CG8034	TF binding site mE1_TFBS_HSA
X	20765833	X_20765833_SNP [dm3] X_20894806_SNP [dm6]	T	C	5.502e^-4	0.98	INTRON shakB	transposable element FlyBase
3R	20280173	3R_20280173_SNP [dm3] 3R_24454451_SNP [dm6]	A	T	5.505e^-4	0.98	INTRON nAChRalpha1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5398121	2L_5398121_SNP [dm3] 2L_5398121_SNP [dm6]	T	C	5.507e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24179664	3R_24179664_SNP [dm3] 3R_28353942_SNP [dm6]	T	C	5.508e^-4	0.98	DOWNSTREAM Or98b INTERGENIC
2L	16800572	2L_16800572_SNP [dm3] 2L_16800572_SNP [dm6]	A	T	5.539e^-4	0.98	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
X	1394167	X_1394167_SNP [dm3] X_1500134_SNP [dm6]	G	A	5.544e^-4	0.98	INTRON inc & 1 other	TF binding site mE1_TFBS_chinmo
X	5373680	X_5373680_SNP [dm3] X_5479647_SNP [dm6]	G	T	5.545e^-4	0.98	INTRON SPR	TF binding site BDTNP1_TFBS_twi
3R	7868879	3R_7868879_SNP [dm3] 3R_12043157_SNP [dm6]	C	A	5.546e^-4	0.98	UTR_3_PRIME CG14736 DOWNSTREAM CG14736
3R	7868880	3R_7868880_SNP [dm3] 3R_12043158_SNP [dm6]	A	T	5.546e^-4	0.98	UTR_3_PRIME CG14736 DOWNSTREAM CG14736
3R	7967181	3R_7967181_SNP [dm3] 3R_12141459_SNP [dm6]	T	C	5.547e^-4	0.98	INTRON dpr15	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10891098	3R_10891098_SNP [dm3] 3R_15065376_SNP [dm6]	G	A	5.551e^-4	0.98	INTRON dpr9
2L	13386314	2L_13386314_SNP [dm3] 2L_13386314_SNP [dm6]	G	A	5.556e^-4	0.98	UPSTREAM CR44599 DOWNSTREAM loqs INTRON CG9293	TF binding site BDTNP1_TFBS_dl
2L	14559479	2L_14559479_SNP [dm3] 2L_14559479_SNP [dm6]	T	C	5.557e^-4	0.98	UPSTREAM CR44854 INTERGENIC
3R	9007332	3R_9007332_SNP [dm3] 3R_13181610_SNP [dm6]	T	A	5.605e^-4	0.98	NON_SYNONYMOUS_CODING CG8138
3R	9007334	3R_9007334_SNP [dm3] 3R_13181612_SNP [dm6]	G	T	5.605e^-4	0.98	NON_SYNONYMOUS_CODING CG8138
2R	8383026	2R_8383026_SNP [dm3] 2R_12495521_SNP [dm6]	T	C	5.615e^-4	0.98	UPSTREAM s-cup INTRON fdl
2R	17196352	2R_17196352_SNP [dm3] 2R_21308847_SNP [dm6]	A	G	5.624e^-4	0.98	SYNONYMOUS_CODING CG42672 DOWNSTREAM CR45149 INTRON CG42672	TF binding site mE1_TFBS_cad
3L	11570072	3L_11570072_SNP [dm3] 3L_11576972_SNP [dm6]	A	G	5.624e^-4	0.98	UTR_5_PRIME CG33489 UPSTREAM CG33489 DOWNSTREAM CG33271
3L	11570089	3L_11570089_SNP [dm3] 3L_11576989_SNP [dm6]	A	C	5.624e^-4	0.98	START_GAINED CG33489 UTR_5_PRIME CG33489 UPSTREAM CG33489 DOWNSTREAM CG33271
3L	11570102	3L_11570102_SNP [dm3] 3L_11577002_SNP [dm6]	G	T	5.624e^-4	0.98	UTR_5_PRIME CG33489 UPSTREAM CG33489 DOWNSTREAM CG33271
3L	11946790	3L_11946790_SNP [dm3] 3L_11953690_SNP [dm6]	C	T	5.624e^-4	0.98	UPSTREAM CG7248 & 1 other INTERGENIC
3L	11947301	3L_11947301_SNP [dm3] 3L_11954201_SNP [dm6]	G	T	5.624e^-4	0.98	UTR_5_PRIME CG7248 UPSTREAM obst-G
3L	11947321	3L_11947321_SNP [dm3] 3L_11954221_SNP [dm6]	G	A	5.624e^-4	0.98	UTR_5_PRIME CG7248 UPSTREAM obst-G
3L	11947337	3L_11947337_SNP [dm3] 3L_11954237_SNP [dm6]	A	C	5.624e^-4	0.98	UTR_5_PRIME CG7248 UPSTREAM obst-G
3L	2386870	3L_2386870_SNP [dm3] 3L_2386870_SNP [dm6]	G	A	5.624e^-4	0.98	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	7805516	3L_7805516_SNP [dm3] 3L_7812416_SNP [dm6]	A	T	5.624e^-4	0.98	UTR_3_PRIME Pdp1
3R	22976996	3R_22976996_SNP [dm3] 3R_27151274_SNP [dm6]	C	A	5.624e^-4	0.98	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	11556997	X_11556997_SNP [dm3] X_11662964_SNP [dm6]	A	G	5.624e^-4	0.98	INTRON Ptp10D
X	14247513	X_14247513_SNP [dm3] X_14353480_SNP [dm6]	A	C	5.624e^-4	0.98	INTRON dpr8
X	7658243	X_7658243_SNP [dm3] X_7764210_SNP [dm6]	G	A	5.624e^-4	0.98	UPSTREAM Ir7a INTERGENIC
X	9193463	X_9193463_SNP [dm3] X_9299430_SNP [dm6]	T	C	5.624e^-4	0.98	INTRON lz
3R	9719378	3R_9719378_SNP [dm3] 3R_13893656_SNP [dm6]	C	A	5.630e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17637974	3R_17637974_SNP [dm3] 3R_21812252_SNP [dm6]	C	T	5.638e^-4	0.98	INTRON CASK
3L	8216719	3L_8216719_SNP [dm3] 3L_8223619_SNP [dm6]	C	A	5.647e^-4	0.98	DOWNSTREAM CG13678 INTERGENIC	TF binding site mE1_TFBS_cad
X	1868417	X_1868417_SNP [dm3] X_1974384_SNP [dm6]	G	A	5.650e^-4	0.98	INTRON Hr4	TF binding site mE1_TFBS_Trl
3L	20625732	3L_20625732_SNP [dm3] 3L_20632632_SNP [dm6]	G	A	5.657e^-4	0.98	UPSTREAM CR44681 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4780565	2L_4780565_SNP [dm3] 2L_4780565_SNP [dm6]	T	C	5.666e^-4	0.98	INTRON CG15630
3R	26922304	3R_26922304_SNP [dm3] 3R_31096582_SNP [dm6]	A	G	5.668e^-4	0.98	INTRON CG11317
X	19029325	X_19029325_INS [dm3] X_19135292_INS [dm6]	G	GG	5.673e^-4	0.98	UTR_3_PRIME Obp18a DOWNSTREAM RhoGAP18B
2R	8778886	2R_8778886_SNP [dm3] 2R_12891381_SNP [dm6]	G	C	5.698e^-4	0.98	INTRON vg	TF binding site mE1_TFBS_cad
3R	7855826	3R_7855826_SNP [dm3] 3R_12030104_SNP [dm6]	T	G	5.721e^-4	0.98	SYNONYMOUS_CODING CG31358 UTR_5_PRIME CG42505 & 1 other
X	3811831	X_3811831_SNP [dm3] X_3917798_SNP [dm6]	G	T	5.722e^-4	0.98	INTRON CG42541
3L	4723237	3L_4723237_SNP [dm3] 3L_4723237_SNP [dm6]	G	C	5.746e^-4	0.98	INTRON RhoGEF64C	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	8045788	2L_8045788_SNP [dm3] 2L_8045788_SNP [dm6]	T	C	5.750e^-4	0.98	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14116677	2R_14116677_SNP [dm3] 2R_18229172_SNP [dm6]	A	T	5.753e^-4	0.98	DOWNSTREAM CR45310 EXON CR45311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	6431219	3R_6431219_SNP [dm3] 3R_10605497_SNP [dm6]	T	C	5.756e^-4	0.98	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18643444	2R_18643444_SNP [dm3] 2R_22755939_SNP [dm6]	G	A	5.757e^-4	0.98	UPSTREAM CR30267 DOWNSTREAM CG13526 INTRON CG42260	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18643447	2R_18643447_SNP [dm3] 2R_22755942_SNP [dm6]	T	A	5.757e^-4	0.98	UPSTREAM CR30267 DOWNSTREAM CG13526 INTRON CG42260	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5815086	3L_5815086_SNP [dm3] 3L_5821986_SNP [dm6]	T	A	5.766e^-4	0.98	INTRON vn
3R	6129975	3R_6129975_SNP [dm3] 3R_10304253_SNP [dm6]	T	C	5.776e^-4	0.98	SYNONYMOUS_CODING CG43143
X	16618578	X_16618578_SNP [dm3] X_16724545_SNP [dm6]	G	A	5.785e^-4	0.98	INTRON CG32572	TF binding site mE1_TFBS_HSA
X	4453873	X_4453873_SNP [dm3] X_4559840_SNP [dm6]	G	C	5.801e^-4	0.98	SYNONYMOUS_CODING CG3546 INTRON CR32773	TF binding site mE1_TFBS_chinmo
2L	16177084	2L_16177084_SNP [dm3] 2L_16177084_SNP [dm6]	A	G	5.806e^-4	0.98	INTRON Ca-alpha1D
2L	16177102	2L_16177102_SNP [dm3] 2L_16177102_SNP [dm6]	T	C	5.806e^-4	0.98	INTRON Ca-alpha1D
3R	19877871	3R_19877871_SNP [dm3] 3R_24052149_SNP [dm6]	C	A	5.833e^-4	0.98	NON_SYNONYMOUS_CODING CG5991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	15313958	3R_15313958_SNP [dm3] 3R_19488236_SNP [dm6]	G	A	5.838e^-4	0.98	INTRON Dys
2R	16374252	2R_16374252_SNP [dm3] 2R_20486747_SNP [dm6]	G	C	5.840e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20011166	3R_20011166_SNP [dm3] 3R_24185444_SNP [dm6]	A	G	5.848e^-4	0.98	UPSTREAM CHORD INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18433730	X_18433730_SNP [dm3] X_18539697_SNP [dm6]	G	A	5.850e^-4	0.98	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12203865	2R_12203865_SNP [dm3] 2R_16316360_SNP [dm6]	A	T	5.852e^-4	0.98	UTR_3_PRIME Nox & 1 other
3L	20070107	3L_20070107_SNP [dm3] 3L_20077007_SNP [dm6]	C	G	5.862e^-4	0.98	INTRON sNPF-R
3L	5361315	3L_5361315_SNP [dm3] 3L_5368215_SNP [dm6]	A	T	5.862e^-4	0.98	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
2R	18621886	2R_18621886_SNP [dm3] 2R_22734381_SNP [dm6]	T	A	5.873e^-4	0.98	INTRON jbug
2R	18995240	2R_18995240_SNP [dm3] 2R_23107717_SNP [dm6]	C	G	5.874e^-4	0.98	INTERGENIC
2R	8367105	2R_8367105_SNP [dm3] 2R_12479600_SNP [dm6]	G	T	5.891e^-4	0.98	INTRON Dh44-R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19029937	X_19029937_INS [dm3] X_19135904_INS [dm6]	C	CCC	5.892e^-4	0.98	UPSTREAM Obp18a DOWNSTREAM RhoGAP18B INTERGENIC	regulatory region REDfly_CRMs
X	2084118	X_2084118_SNP [dm3] X_2190085_SNP [dm6]	A	G	5.896e^-4	0.98	INTRON Mct1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	2084488	X_2084488_SNP [dm3] X_2190455_SNP [dm6]	C	A	5.896e^-4	0.98	INTRON Mct1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4408560	2R_4408560_INS [dm3] 2R_8521055_INS [dm6]	T	TT	5.901e^-4	0.98	INTRON mtt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25225137	3R_25225137_SNP [dm3] 3R_29399415_SNP [dm6]	A	T	5.923e^-4	0.98	INTRON Ptp99A
X	5051496	X_5051496_SNP [dm3] X_5157463_SNP [dm6]	G	T	5.937e^-4	0.98	INTRON rg & 1 other
3R	5819544	3R_5819544_SNP [dm3] 3R_9993822_SNP [dm6]	G	C	5.942e^-4	0.98	UTR_3_PRIME Glut4EF
2L	4126250	2L_4126250_SNP [dm3] 2L_4126250_SNP [dm6]	A	T	5.945e^-4	0.98	INTERGENIC
3L	1679196	3L_1679196_SNP [dm3] 3L_1679196_SNP [dm6]	T	C	5.963e^-4	0.98	INTRON CG7991
3L	13593706	3L_13593706_SNP [dm3] 3L_13600606_SNP [dm6]	G	A	5.974e^-4	0.98	DOWNSTREAM CR45120 INTRON bru-3
2R	19715801	2R_19715801_SNP [dm3] 2R_23828278_SNP [dm6]	T	C	5.978e^-4	0.98	INTRON CG5549
X	2071937	X_2071937_SNP [dm3] X_2177904_SNP [dm6]	C	G	5.978e^-4	0.98	SYNONYMOUS_CODING Cyp4d2 EXON CR44690	TF binding site mE1_TFBS_inv
2R	16611111	2R_16611111_SNP [dm3] 2R_20723606_SNP [dm6]	T	C	6.004e^-4	0.98	DOWNSTREAM CR44660 INTRON dpr
2L	5408567	2L_5408567_SNP [dm3] 2L_5408567_SNP [dm6]	C	T	6.009e^-4	0.98	INTRON H15	TF binding site mE1_TFBS_cad
3R	9085707	3R_9085707_SNP [dm3] 3R_13259985_SNP [dm6]	G	A	6.024e^-4	0.98	UPSTREAM CG11686 & 1 other INTERGENIC
3L	5196300	3L_5196300_SNP [dm3] 3L_5203200_SNP [dm6]	T	A	6.029e^-4	0.98	INTRON shep
3R	23179523	3R_23179523_SNP [dm3] 3R_27353801_SNP [dm6]	C	G	6.036e^-4	0.98	INTRON CG42534
2L	6571313	2L_6571313_SNP [dm3] 2L_6571313_SNP [dm6]	A	G	6.049e^-4	0.98	UTR_3_PRIME CG11319 DOWNSTREAM CG11319 INTRON CG11319
3R	18099307	3R_18099307_SNP [dm3] 3R_22273585_SNP [dm6]	C	A	6.054e^-4	0.98	INTRON SKIP
2R	8978031	2R_8978031_SNP [dm3] 2R_13090526_SNP [dm6]	A	T	6.068e^-4	0.98	INTERGENIC
2R	9273924	2R_9273924_SNP [dm3] 2R_13386419_SNP [dm6]	A	G	6.070e^-4	0.98	INTERGENIC
3L	10577011	3L_10577011_SNP [dm3] 3L_10583911_SNP [dm6]	A	T	6.077e^-4	0.98	INTRON A2bp1
2R	9768027	2R_9768027_SNP [dm3] 2R_13880522_SNP [dm6]	A	T	6.079e^-4	0.98	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2R	9781611	2R_9781611_SNP [dm3] 2R_13894106_SNP [dm6]	C	T	6.138e^-4	0.98	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21591151	3R_21591151_SNP [dm3] 3R_25765429_SNP [dm6]	A	C	6.146e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19211443	3R_19211443_SNP [dm3] 3R_23385721_SNP [dm6]	A	C	6.171e^-4	0.98	UPSTREAM CG4393 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	13593825	3L_13593825_SNP [dm3] 3L_13600725_SNP [dm6]	G	A	6.172e^-4	0.98	DOWNSTREAM CR45120 INTRON bru-3
3L	13593842	3L_13593842_SNP [dm3] 3L_13600742_SNP [dm6]	C	T	6.172e^-4	0.98	DOWNSTREAM CR45120 INTRON bru-3
3R	12698183	3R_12698183_SNP [dm3] 3R_16872461_SNP [dm6]	A	C	6.180e^-4	0.98	INTRON iab-8
3R	25395696	3R_25395696_SNP [dm3] 3R_29569974_SNP [dm6]	T	C	6.205e^-4	0.98	INTERGENIC
3L	5361186	3L_5361186_SNP [dm3] 3L_5368086_SNP [dm6]	C	G	6.207e^-4	0.98	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
2L	17602197	2L_17602197_SNP [dm3] 2L_17602197_SNP [dm6]	C	G	6.223e^-4	0.98	INTRON Sytalpha
3R	20563504	3R_20563504_SNP [dm3] 3R_24737782_SNP [dm6]	C	A	6.226e^-4	0.98	INTRON tok
3R	15109253	3R_15109253_SNP [dm3] 3R_19283531_SNP [dm6]	A	G	6.250e^-4	0.98	INTERGENIC
2R	18428587	2R_18428587_SNP [dm3] 2R_22541082_SNP [dm6]	C	A	6.258e^-4	0.98	INTRON px
3L	8395430	3L_8395430_DEL [dm3] 3L_8402330_DEL [dm6]	TCGT	T	6.259e^-4	0.98	UTR_3_PRIME mkg-p & 1 other DOWNSTREAM CG7120
2L	20317081	2L_20317081_INS [dm3] 2L_20317081_INS [dm6]	T	TT	6.261e^-4	0.98	INTRON spir & 1 other
2L	4319242	2L_4319242_SNP [dm3] 2L_4319242_SNP [dm6]	T	C	6.263e^-4	0.98	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_cad
X	2630964	X_2630964_SNP [dm3] X_2736931_SNP [dm6]	G	A	6.264e^-4	0.98	SYNONYMOUS_CODING crm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4234361	2L_4234361_SNP [dm3] 2L_4234361_SNP [dm6]	T	G	6.266e^-4	0.98	INTERGENIC
2L	7813243	2L_7813243_SNP [dm3] 2L_7813243_SNP [dm6]	A	G	6.270e^-4	0.98	INTRON LanB1	TF binding site BDTNP1_TFBS_twi
2L	12614481	2L_12614481_SNP [dm3] 2L_12614481_SNP [dm6]	T	C	6.272e^-4	0.98	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	5175659	2R_5175659_SNP [dm3] 2R_9288154_SNP [dm6]	T	C	6.282e^-4	0.98	SYNONYMOUS_CODING CG1968 UTR_3_PRIME CG1968 DOWNSTREAM Mad1	TF binding site mE1_TFBS_HSA
3R	6402460	3R_6402460_SNP [dm3] 3R_10576738_SNP [dm6]	A	G	6.292e^-4	0.98	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16364249	2L_16364249_SNP [dm3] 2L_16364249_SNP [dm6]	T	C	6.296e^-4	0.98	INTERGENIC	regulatory region REDfly_CRMs
2L	16364257	2L_16364257_SNP [dm3] 2L_16364257_SNP [dm6]	G	C	6.296e^-4	0.98	INTERGENIC	regulatory region REDfly_CRMs
3R	9919455	3R_9919455_SNP [dm3] 3R_14093733_SNP [dm6]	C	T	6.319e^-4	0.98	INTRON CCHa1
2L	16800735	2L_16800735_SNP [dm3] 2L_16800735_SNP [dm6]	A	T	6.321e^-4	0.98	SYNONYMOUS_CODING Ugt36Bc	TF binding site mE1_TFBS_cad
2L	16800781	2L_16800781_SNP [dm3] 2L_16800781_SNP [dm6]	C	A	6.321e^-4	0.98	NON_SYNONYMOUS_CODING Ugt36Bc	TF binding site mE1_TFBS_cad
3R	25850658	3R_25850658_SNP [dm3] 3R_30024936_SNP [dm6]	T	A	6.340e^-4	0.98	INTRON Axn
2L	16388614	2L_16388614_SNP [dm3] 2L_16388614_SNP [dm6]	A	G	6.351e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16388616	2L_16388616_SNP [dm3] 2L_16388616_SNP [dm6]	G	C	6.351e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16388617	2L_16388617_SNP [dm3] 2L_16388617_SNP [dm6]	A	G	6.351e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15525833	3L_15525833_SNP [dm3] 3L_15532733_SNP [dm6]	T	C	6.353e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11744106	3L_11744106_SNP [dm3] 3L_11751006_SNP [dm6]	C	A	6.356e^-4	0.98	UPSTREAM Gr68a INTRON CG6024
2L	9253525	2L_9253525_SNP [dm3] 2L_9253525_SNP [dm6]	C	T	6.358e^-4	0.98	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9253549	2L_9253549_SNP [dm3] 2L_9253549_SNP [dm6]	C	G	6.358e^-4	0.98	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12745509	3R_12745509_DEL [dm3] 3R_16919787_DEL [dm6]	CTGGT	C	6.367e^-4	0.98	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	15147340	2L_15147340_SNP [dm3] 2L_15147340_SNP [dm6]	G	A	6.367e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3965362	2L_3965362_SNP [dm3] 2L_3965362_SNP [dm6]	C	T	6.374e^-4	0.98	INTRON fred
2L	14405421	2L_14405421_SNP [dm3] 2L_14405421_SNP [dm6]	A	G	6.379e^-4	0.98	INTRON elB	TF binding site mE1_TFBS_cad
2R	18942973	2R_18942973_SNP [dm3] 2R_23055450_SNP [dm6]	G	C	6.380e^-4	0.98	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18080389	2R_18080389_SNP [dm3] 2R_22192884_SNP [dm6]	T	A	6.381e^-4	0.98	INTRON Swim
2R	8977844	2R_8977844_SNP [dm3] 2R_13090339_SNP [dm6]	G	T	6.387e^-4	0.98	INTERGENIC
2R	8366414	2R_8366414_SNP [dm3] 2R_12478909_SNP [dm6]	T	C	6.401e^-4	0.98	INTRON Dh44-R2
X	4197449	X_4197449_INS [dm3] X_4303416_INS [dm6]	G	GTAGG	6.402e^-4	0.98	INTERGENIC
X	13937806	X_13937806_SNP [dm3] X_14043773_SNP [dm6]	C	A	6.414e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16157384	3L_16157384_SNP [dm3] 3L_16164284_SNP [dm6]	G	T	6.414e^-4	0.98	UTR_5_PRIME CG5151	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9092651	3R_9092651_SNP [dm3] 3R_13266929_SNP [dm6]	A	C	6.450e^-4	0.98	SYNONYMOUS_CODING Su_var_3-7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2632729	X_2632729_SNP [dm3] X_2738696_SNP [dm6]	C	T	6.465e^-4	0.98	UTR_5_PRIME crm UPSTREAM crm DOWNSTREAM Syx4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	19687038	2L_19687038_SNP [dm3] 2L_19687038_SNP [dm6]	G	A	6.466e^-4	0.98	INTRON Lar
2L	4304206	2L_4304206_INS [dm3] 2L_4304206_INS [dm6]	A	AGT	6.466e^-4	0.98	INTRON tutl
2L	12136659	2L_12136659_SNP [dm3] 2L_12136659_SNP [dm6]	T	A	6.477e^-4	0.98	INTERGENIC
X	12295412	X_12295412_SNP [dm3] X_12401379_SNP [dm6]	T	C	6.479e^-4	0.98	INTERGENIC
X	12295421	X_12295421_SNP [dm3] X_12401388_SNP [dm6]	G	A	6.479e^-4	0.98	INTERGENIC
X	12295422	X_12295422_SNP [dm3] X_12401389_SNP [dm6]	A	G	6.479e^-4	0.98	INTERGENIC
3L	8164549	3L_8164549_SNP [dm3] 3L_8171449_SNP [dm6]	C	A	6.480e^-4	0.98	INTRON RecQ4	TF binding site BDTNP1_TFBS_twi
3L	13593447	3L_13593447_DEL [dm3] 3L_13600347_DEL [dm6]	TT	G	6.489e^-4	0.98	DOWNSTREAM CR45120 INTRON bru-3
2L	9013131	2L_9013131_SNP [dm3] 2L_9013131_SNP [dm6]	A	G	6.493e^-4	0.98	SYNONYMOUS_CODING Rcd-1r UTR_3_PRIME CG13102 DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23608792	3R_23608792_SNP [dm3] 3R_27783070_SNP [dm6]	C	A	6.495e^-4	0.98	INTRON CG34353
3L	22019298	3L_22019298_SNP [dm3] 3L_22026198_SNP [dm6]	T	C	6.510e^-4	0.98	DOWNSTREAM CG7140 INTERGENIC
3L	22019300	3L_22019300_SNP [dm3] 3L_22026200_SNP [dm6]	A	T	6.510e^-4	0.98	DOWNSTREAM CG7140 INTERGENIC
3L	22019304	3L_22019304_MNP [dm3] 3L_22026204_MNP [dm6]	ATG	GAC	6.510e^-4	0.98	DOWNSTREAM CG7140 INTERGENIC
2R	18605358	2R_18605358_SNP [dm3] 2R_22717853_SNP [dm6]	C	A	6.524e^-4	0.98	DOWNSTREAM CG30268 INTRON jbug
3R	8549139	3R_8549139_SNP [dm3] 3R_12723417_SNP [dm6]	T	C	6.535e^-4	0.98	UPSTREAM Men INTERGENIC
3L	721196	3L_721196_SNP [dm3] 3L_721196_SNP [dm6]	C	A	6.535e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7825022	3R_7825022_SNP [dm3] 3R_11999300_SNP [dm6]	C	G	6.557e^-4	0.98	START_GAINED Ect3 UTR_5_PRIME Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7848367	3R_7848367_SNP [dm3] 3R_12022645_SNP [dm6]	C	T	6.557e^-4	0.98	INTERGENIC
3R	8082775	3R_8082775_SNP [dm3] 3R_12257053_SNP [dm6]	C	T	6.579e^-4	0.98	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	14057872	3L_14057872_SNP [dm3] 3L_14064772_SNP [dm6]	A	T	6.586e^-4	0.98	INTRON CG32138
3R	25395702	3R_25395702_SNP [dm3] 3R_29569980_SNP [dm6]	C	T	6.597e^-4	0.98	INTERGENIC
X	13296871	X_13296871_SNP [dm3] X_13402838_SNP [dm6]	A	G	6.603e^-4	0.98	UTR_5_PRIME CG12725
3R	1796751	3R_1796751_SNP [dm3] 3R_5971029_SNP [dm6]	G	T	6.607e^-4	0.98	DOWNSTREAM CR44926 INTERGENIC
3R	8605730	3R_8605730_SNP [dm3] 3R_12780008_SNP [dm6]	A	G	6.608e^-4	0.98	INTRON beat-Vc
X	16095085	X_16095085_SNP [dm3] X_16201052_SNP [dm6]	C	G	6.610e^-4	0.98	INTERGENIC
3R	8159084	3R_8159084_SNP [dm3] 3R_12333362_SNP [dm6]	G	A	6.627e^-4	0.98	INTERGENIC
X	3704113	X_3704113_SNP [dm3] X_3810080_SNP [dm6]	G	A	6.627e^-4	0.98	SYNONYMOUS_CODING fd3F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	3704119	X_3704119_SNP [dm3] X_3810086_SNP [dm6]	A	G	6.627e^-4	0.98	SYNONYMOUS_CODING fd3F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	7825325	3R_7825325_DEL [dm3] 3R_11999603_DEL [dm6]	GTGG	G	6.651e^-4	0.98	INTRON Tk & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5849361	3L_5849361_SNP [dm3] 3L_5856261_SNP [dm6]	A	C	6.668e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	6739947	2R_6739947_SNP [dm3] 2R_10852442_SNP [dm6]	C	A	6.675e^-4	0.98	INTRON CG30015
3R	5197880	3R_5197880_SNP [dm3] 3R_9372158_SNP [dm6]	A	G	6.678e^-4	0.98	SYNONYMOUS_CODING FER UPSTREAM FER INTRON FER
3L	21890492	3L_21890492_SNP [dm3] 3L_21897392_SNP [dm6]	G	A	6.685e^-4	0.98	INTRON mub
3L	22007664	3L_22007664_SNP [dm3] 3L_22014564_SNP [dm6]	C	T	6.685e^-4	0.98	INTERGENIC
3L	22015191	3L_22015191_SNP [dm3] 3L_22022091_SNP [dm6]	A	T	6.685e^-4	0.98	INTERGENIC
3L	22026230	3L_22026230_SNP [dm3] 3L_22033130_SNP [dm6]	C	A	6.685e^-4	0.98	INTERGENIC
3L	22028371	3L_22028371_SNP [dm3] 3L_22035271_SNP [dm6]	G	C	6.685e^-4	0.98	UTR_5_PRIME Oct-TyrR
3L	22029861	3L_22029861_SNP [dm3] 3L_22036761_SNP [dm6]	G	T	6.685e^-4	0.98	INTRON Oct-TyrR
3L	22045020	3L_22045020_SNP [dm3] 3L_22051920_SNP [dm6]	G	A	6.685e^-4	0.98	INTRON Oct-TyrR
3L	22048947	3L_22048947_SNP [dm3] 3L_22055847_SNP [dm6]	C	T	6.685e^-4	0.98	INTRON Oct-TyrR
3L	22049183	3L_22049183_SNP [dm3] 3L_22056083_SNP [dm6]	A	G	6.685e^-4	0.98	INTRON Oct-TyrR
3L	12063008	3L_12063008_SNP [dm3] 3L_12069908_SNP [dm6]	T	G	6.688e^-4	0.98	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	21806861	3L_21806861_SNP [dm3] 3L_21813761_SNP [dm6]	A	G	6.695e^-4	0.98	UPSTREAM CG43895 INTRON eg
3L	22013411	3L_22013411_SNP [dm3] 3L_22020311_SNP [dm6]	A	C	6.720e^-4	0.98	INTERGENIC
3L	11947324	3L_11947324_SNP [dm3] 3L_11954224_SNP [dm6]	T	A	6.729e^-4	0.98	UTR_5_PRIME CG7248 UPSTREAM obst-G
X	11315357	X_11315357_SNP [dm3] X_11421324_SNP [dm6]	G	A	6.757e^-4	0.98	INTERGENIC
2L	685811	2L_685811_SNP [dm3] 2L_685811_SNP [dm6]	A	C	6.765e^-4	0.98	INTRON ds
3L	8169426	3L_8169426_SNP [dm3] 3L_8176326_SNP [dm6]	A	C	6.769e^-4	0.98	UTR_3_PRIME Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	8073224	X_8073224_SNP [dm3] X_8179191_SNP [dm6]	A	G	6.771e^-4	0.98	UTR_5_PRIME sdt INTRON sdt
3L	20596428	3L_20596428_SNP [dm3] 3L_20603328_SNP [dm6]	G	A	6.775e^-4	0.98	INTRON knrl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16338314	X_16338314_SNP [dm3] X_16444281_SNP [dm6]	A	G	6.775e^-4	0.98	SYNONYMOUS_CODING rngo DOWNSTREAM eIF-2alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22017196	3L_22017196_SNP [dm3] 3L_22024096_SNP [dm6]	T	A	6.776e^-4	0.98	INTERGENIC
2L	22003378	2L_22003378_SNP [dm3] 2L_22003378_SNP [dm6]	A	T	6.778e^-4	0.98	INTERGENIC	transposable element FlyBase
2L	16605709	2L_16605709_SNP [dm3] 2L_16605709_SNP [dm6]	A	C	6.784e^-4	0.98	UPSTREAM CG31815 INTRON CG42389
3L	946846	3L_946846_SNP [dm3] 3L_946846_SNP [dm6]	G	C	6.795e^-4	0.98	INTRON Glut1
2R	18793384	2R_18793384_SNP [dm3] 2R_22905861_SNP [dm6]	C	G	6.796e^-4	0.98	INTRON nahoda
2R	18797380	2R_18797380_SNP [dm3] 2R_22909857_SNP [dm6]	C	T	6.796e^-4	0.98	INTRON nahoda
2R	18797511	2R_18797511_SNP [dm3] 2R_22909988_SNP [dm6]	G	A	6.796e^-4	0.98	INTRON nahoda
2R	18798215	2R_18798215_SNP [dm3] 2R_22910692_SNP [dm6]	C	A	6.796e^-4	0.98	INTRON nahoda
2R	18799810	2R_18799810_SNP [dm3] 2R_22912287_SNP [dm6]	C	A	6.796e^-4	0.98	SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	18799813	2R_18799813_SNP [dm3] 2R_22912290_SNP [dm6]	T	A	6.796e^-4	0.98	SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	18799866	2R_18799866_SNP [dm3] 2R_22912343_SNP [dm6]	A	C	6.796e^-4	0.98	NON_SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	18801446	2R_18801446_SNP [dm3] 2R_22913923_SNP [dm6]	C	T	6.796e^-4	0.98	SYNONYMOUS_CODING nahoda
2R	6823884	2R_6823884_SNP [dm3] 2R_10936379_SNP [dm6]	T	A	6.796e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	6824023	2R_6824023_SNP [dm3] 2R_10936518_SNP [dm6]	G	T	6.796e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19113756	2R_19113756_SNP [dm3] 2R_23226233_SNP [dm6]	A	G	6.817e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4144346	2R_4144346_SNP [dm3] 2R_8256841_SNP [dm6]	C	T	6.836e^-4	0.98	UTR_3_PRIME CG14760	TF binding site mE1_TFBS_cad
3R	26076132	3R_26076132_SNP [dm3] 3R_30250410_SNP [dm6]	T	C	6.847e^-4	0.98	SYNONYMOUS_CODING CG34299 UPSTREAM CG9682 DOWNSTREAM CG34299
2R	10059447	2R_10059447_SNP [dm3] 2R_14171942_SNP [dm6]	A	G	6.847e^-4	0.98	UTR_5_PRIME CG8331 INTRON CG8331
2L	16080925	2L_16080925_SNP [dm3] 2L_16080925_SNP [dm6]	T	C	6.851e^-4	0.98	UTR_3_PRIME beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13673262	2L_13673262_SNP [dm3] 2L_13673262_SNP [dm6]	T	C	6.852e^-4	0.98	DOWNSTREAM CG18507 INTERGENIC
2L	13673266	2L_13673266_SNP [dm3] 2L_13673266_SNP [dm6]	A	T	6.852e^-4	0.98	DOWNSTREAM CG18507 INTERGENIC
3R	10824537	3R_10824537_SNP [dm3] 3R_14998815_SNP [dm6]	G	A	6.852e^-4	0.98	INTERGENIC
2L	855252	2L_855252_SNP [dm3] 2L_855252_SNP [dm6]	T	G	6.855e^-4	0.98	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	18360090	3L_18360090_SNP [dm3] 3L_18366990_SNP [dm6]	C	T	6.859e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14634928	2R_14634928_SNP [dm3] 2R_18747423_SNP [dm6]	G	T	6.865e^-4	0.98	INTRON Hs3st-A	TF binding site mE1_TFBS_chinmo
2L	7292972	2L_7292972_SNP [dm3] 2L_7292972_SNP [dm6]	C	T	6.869e^-4	0.98	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26914961	3R_26914961_SNP [dm3] 3R_31089239_SNP [dm6]	G	C	6.876e^-4	0.98	INTERGENIC
2R	8175790	2R_8175790_SNP [dm3] 2R_12288285_SNP [dm6]	A	T	6.876e^-4	0.98	INTRON CG42700
2R	8175795	2R_8175795_SNP [dm3] 2R_12288290_SNP [dm6]	C	G	6.876e^-4	0.98	INTRON CG42700
2L	3934587	2L_3934587_SNP [dm3] 2L_3934587_SNP [dm6]	C	A	6.891e^-4	0.98	INTRON fred
3R	7315441	3R_7315441_SNP [dm3] 3R_11489719_SNP [dm6]	C	A	6.892e^-4	0.98	INTERGENIC
2R	17229449	2R_17229449_SNP [dm3] 2R_21341944_SNP [dm6]	A	C	6.894e^-4	0.98	UPSTREAM CG15666 DOWNSTREAM dom INTERGENIC
X	8752604	X_8752604_SNP [dm3] X_8858571_SNP [dm6]	A	C	6.920e^-4	0.98	INTRON CG12075
3R	9129506	3R_9129506_SNP [dm3] 3R_13303784_SNP [dm6]	G	T	6.923e^-4	0.98	UTR_3_PRIME CG43208 UPSTREAM CG32473 INTRON CG32473
X	17515773	X_17515773_SNP [dm3] X_17621740_SNP [dm6]	G	A	6.930e^-4	0.98	INTERGENIC
2L	785095	2L_785095_SNP [dm3] 2L_785095_SNP [dm6]	C	T	6.957e^-4	0.98	SYNONYMOUS_CODING CG3544	TF binding site mE1_TFBS_chinmo
2L	10522790	2L_10522790_SNP [dm3] 2L_10522790_SNP [dm6]	C	G	6.966e^-4	0.98	INTERGENIC
3R	11280767	3R_11280767_SNP [dm3] 3R_15455045_SNP [dm6]	T	C	6.977e^-4	0.98	INTRON AdamTS-A
2L	4796461	2L_4796461_SNP [dm3] 2L_4796461_SNP [dm6]	G	A	6.979e^-4	0.98	SYNONYMOUS_CODING CG3294 UTR_3_PRIME CG3294 DOWNSTREAM Clect27
3R	9915291	3R_9915291_SNP [dm3] 3R_14089569_SNP [dm6]	T	C	6.981e^-4	0.98	UTR_5_PRIME Npc2b
2R	7180299	2R_7180299_SNP [dm3] 2R_11292794_SNP [dm6]	T	A	6.982e^-4	0.98	UTR_3_PRIME CG30033 DOWNSTREAM CG18336 INTRON dare	TF binding site mE1_TFBS_sens
3L	7228442	3L_7228442_SNP [dm3] 3L_7235342_SNP [dm6]	T	C	6.998e^-4	0.98	INTRON CG14826	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22018939	3L_22018939_SNP [dm3] 3L_22025839_SNP [dm6]	G	A	7.004e^-4	0.98	DOWNSTREAM CG7140 INTERGENIC
3R	8584247	3R_8584247_SNP [dm3] 3R_12758525_SNP [dm6]	C	T	7.008e^-4	0.98	INTRON beat-Vc
3L	4760377	3L_4760377_SNP [dm3] 3L_4760377_SNP [dm6]	T	C	7.011e^-4	0.98	INTRON RhoGEF64C
2L	14429820	2L_14429820_SNP [dm3] 2L_14429820_SNP [dm6]	T	A	7.011e^-4	0.98	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16023102	3R_16023102_SNP [dm3] 3R_20197380_SNP [dm6]	C	G	7.018e^-4	0.98	INTERGENIC
3L	1454465	3L_1454465_SNP [dm3] 3L_1454465_SNP [dm6]	C	A	7.041e^-4	0.98	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
2L	16148336	2L_16148336_SNP [dm3] 2L_16148336_SNP [dm6]	C	G	7.046e^-4	0.98	INTERGENIC
X	16985212	X_16985212_SNP [dm3] X_17091179_SNP [dm6]	A	T	7.072e^-4	0.98	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14218397	2L_14218397_SNP [dm3] 2L_14218397_SNP [dm6]	A	G	7.078e^-4	0.98	INTRON Dyrk2
2L	12325711	2L_12325711_SNP [dm3] 2L_12325711_SNP [dm6]	C	G	7.094e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13575799	X_13575799_SNP [dm3] X_13681766_SNP [dm6]	G	C	7.119e^-4	0.98	INTERGENIC
3R	15839256	3R_15839256_SNP [dm3] 3R_20013534_SNP [dm6]	A	T	7.133e^-4	0.98	UPSTREAM CG4836 & 1 other INTERGENIC
2L	18406219	2L_18406219_SNP [dm3] 2L_18406219_SNP [dm6]	A	T	7.135e^-4	0.98	INTERGENIC
2R	8512643	2R_8512643_SNP [dm3] 2R_12625138_SNP [dm6]	G	A	7.146e^-4	0.98	UPSTREAM CG17760 INTRON CG30054
3L	14661155	3L_14661155_DEL [dm3] 3L_14668055_DEL [dm6]	AGATCTTGCCA...	A	7.147e^-4	0.98	INTRON dlp
3L	14661182	3L_14661182_DEL [dm3] 3L_14668082_DEL [dm6]	AAA	A	7.147e^-4	0.98	INTRON dlp
3L	14661209	3L_14661209_SNP [dm3] 3L_14668109_SNP [dm6]	C	A	7.147e^-4	0.98	INTRON dlp
3L	8542576	3L_8542576_SNP [dm3] 3L_8549476_SNP [dm6]	C	T	7.151e^-4	0.98	INTRON rhea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9156105	3R_9156105_SNP [dm3] 3R_13330383_SNP [dm6]	A	G	7.216e^-4	0.98	INTRON PK2-R2
3R	8172862	3R_8172862_SNP [dm3] 3R_12347140_SNP [dm6]	G	A	7.220e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	3750761	2L_3750761_SNP [dm3] 2L_3750761_SNP [dm6]	C	T	7.226e^-4	0.98	INTRON CG10019
2L	4305826	2L_4305826_SNP [dm3] 2L_4305826_SNP [dm6]	A	C	7.230e^-4	0.98	DOWNSTREAM tutl INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	5966744	3L_5966744_SNP [dm3] 3L_5973644_SNP [dm6]	A	T	7.232e^-4	0.98	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	24545407	3R_24545407_SNP [dm3] 3R_28719685_SNP [dm6]	C	A	7.233e^-4	0.98	INTRON htt	TF binding site mE1_TFBS_chinmo
X	20764554	X_20764554_SNP [dm3] X_20893527_SNP [dm6]	G	A	7.240e^-4	0.98	INTRON shakB	TF binding site mE1_TFBS_inv
3R	10689419	3R_10689419_INS [dm3] 3R_14863697_INS [dm6]	A	ACAGAGACCCTCT...	7.242e^-4	0.98	INTRON btsz
3R	15853745	3R_15853745_SNP [dm3] 3R_20028023_SNP [dm6]	G	T	7.252e^-4	0.98	UTR_5_PRIME CG4424 UPSTREAM CG4854	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	3042876	2R_3042876_SNP [dm3] 2R_7155371_SNP [dm6]	A	G	7.265e^-4	0.98	UTR_5_PRIME Spn43Ad INTRON pk
3L	18159974	3L_18159974_SNP [dm3] 3L_18166874_SNP [dm6]	G	C	7.271e^-4	0.98	DOWNSTREAM W INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7093759	3R_7093759_SNP [dm3] 3R_11268037_SNP [dm6]	A	T	7.285e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4029526	3R_4029526_SNP [dm3] 3R_8203804_SNP [dm6]	G	T	7.299e^-4	0.98	DOWNSTREAM CheA84a INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3455109	2L_3455109_SNP [dm3] 2L_3455109_SNP [dm6]	A	C	7.331e^-4	0.98	SPLICE_SITE_REGION Cog3 INTRON Cog3
2L	3455113	2L_3455113_SNP [dm3] 2L_3455113_SNP [dm6]	T	A	7.331e^-4	0.98	INTRON Cog3
3R	25850775	3R_25850775_DEL [dm3] 3R_30025053_DEL [dm6]	TTCTT	T	7.331e^-4	0.98	INTRON Axn
2L	852492	2L_852492_SNP [dm3] 2L_852492_SNP [dm6]	G	C	7.353e^-4	0.98	SPLICE_SITE_REGION CG4291 UPSTREAM kraken INTRON CG4291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17614898	2R_17614898_SNP [dm3] 2R_21727393_SNP [dm6]	A	G	7.364e^-4	0.98	DOWNSTREAM CR44750 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13673212	2L_13673212_SNP [dm3] 2L_13673212_SNP [dm6]	T	G	7.369e^-4	0.98	DOWNSTREAM CG18507 INTERGENIC
3L	5083368	3L_5083368_SNP [dm3] 3L_5083368_SNP [dm6]	A	T	7.383e^-4	0.98	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7807974	2L_7807974_SNP [dm3] 2L_7807974_SNP [dm6]	T	A	7.385e^-4	0.98	INTRON cdc14	TF binding site mE1_TFBS_HSA
2L	7807997	2L_7807997_SNP [dm3] 2L_7807997_SNP [dm6]	G	T	7.385e^-4	0.98	INTRON cdc14	TF binding site mE1_TFBS_HSA
2R	10855530	2R_10855530_SNP [dm3] 2R_14968025_SNP [dm6]	A	T	7.393e^-4	0.98	INTRON ckn	TF binding site mE1_TFBS_HSA
2L	14577069	2L_14577069_SNP [dm3] 2L_14577069_SNP [dm6]	C	T	7.395e^-4	0.98	EXON CR44856	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19224941	3R_19224941_SNP [dm3] 3R_23399219_SNP [dm6]	A	G	7.397e^-4	0.98	DOWNSTREAM CR44323 INTERGENIC
3R	18687004	3R_18687004_SNP [dm3] 3R_22861282_SNP [dm6]	A	G	7.417e^-4	0.98	INTERGENIC
2L	19401971	2L_19401971_SNP [dm3] 2L_19401971_SNP [dm6]	T	A	7.426e^-4	0.98	INTRON Pax
3L	4090253	3L_4090253_SNP [dm3] 3L_4090253_SNP [dm6]	A	T	7.429e^-4	0.98	INTRON CG14989	TF binding site mE1_TFBS_cad
3L	14721887	3L_14721887_SNP [dm3] 3L_14728787_SNP [dm6]	G	T	7.430e^-4	0.98	START_GAINED CG13473 UTR_5_PRIME CG13473 INTRON ome
3R	21624480	3R_21624480_SNP [dm3] 3R_25798758_SNP [dm6]	A	T	7.437e^-4	0.98	UPSTREAM CR43847 INTERGENIC
3R	14388580	3R_14388580_SNP [dm3] 3R_18562858_SNP [dm6]	A	G	7.441e^-4	0.98	INTERGENIC
3R	14388588	3R_14388588_SNP [dm3] 3R_18562866_SNP [dm6]	T	C	7.441e^-4	0.98	INTERGENIC
2L	10752924	2L_10752924_SNP [dm3] 2L_10752924_SNP [dm6]	G	T	7.443e^-4	0.98	INTRON CG17124	TF binding site mE1_TFBS_cad
3L	11136949	3L_11136949_SNP [dm3] 3L_11143849_SNP [dm6]	G	T	7.477e^-4	0.98	INTRON CG32082
2L	6665337	2L_6665337_SNP [dm3] 2L_6665337_SNP [dm6]	C	T	7.480e^-4	0.98	NON_SYNONYMOUS_CODING cup START_GAINED CG34310 UTR_5_PRIME CG34310 DOWNSTREAM Galt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9566420	X_9566420_SNP [dm3] X_9672387_SNP [dm6]	G	A	7.481e^-4	0.98	INTRON nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	9566441	X_9566441_SNP [dm3] X_9672408_SNP [dm6]	T	G	7.481e^-4	0.98	SYNONYMOUS_CODING nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	11315388	X_11315388_INS [dm3] X_11421355_INS [dm6]	A	AA	7.489e^-4	0.98	INTERGENIC
X	12187124	X_12187124_SNP [dm3] X_12293091_SNP [dm6]	T	A	7.504e^-4	0.98	INTRON Ten-a
2L	1714799	2L_1714799_SNP [dm3] 2L_1714799_SNP [dm6]	A	C	7.511e^-4	0.98	INTRON frtz	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	9202099	X_9202099_SNP [dm3] X_9308066_SNP [dm6]	C	G	7.515e^-4	0.98	INTERGENIC
2R	6681594	2R_6681594_SNP [dm3] 2R_10794089_SNP [dm6]	G	C	7.523e^-4	0.98	DOWNSTREAM mthl13 INTRON CG33144
3R	10329463	3R_10329463_SNP [dm3] 3R_14503741_SNP [dm6]	T	A	7.538e^-4	0.98	INTRON CR44177	TF binding site mE1_TFBS_cad
X	4197452	X_4197452_SNP [dm3] X_4303419_SNP [dm6]	A	G	7.540e^-4	0.98	INTERGENIC
3L	20070048	3L_20070048_SNP [dm3] 3L_20076948_SNP [dm6]	C	T	7.542e^-4	0.98	INTRON sNPF-R
3L	7028621	3L_7028621_SNP [dm3] 3L_7035521_SNP [dm6]	C	G	7.550e^-4	0.98	INTRON Mp
X	203894	X_203894_SNP [dm3] X_309861_SNP [dm6]	A	C	7.550e^-4	0.98	DOWNSTREAM CG12470 INTRON CG3777
3L	11253062	3L_11253062_SNP [dm3] 3L_11259962_SNP [dm6]	C	G	7.578e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6702840	2R_6702840_SNP [dm3] 2R_10815335_SNP [dm6]	A	T	7.597e^-4	0.98	UTR_3_PRIME CG7222 DOWNSTREAM dgo
3R	20833466	3R_20833466_SNP [dm3] 3R_25007744_SNP [dm6]	T	G	7.606e^-4	0.98	INTRON tnc
3L	5815052	3L_5815052_SNP [dm3] 3L_5821952_SNP [dm6]	G	C	7.611e^-4	0.98	INTRON vn
3L	13152931	3L_13152931_SNP [dm3] 3L_13159831_SNP [dm6]	G	A	7.616e^-4	0.98	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7102006	2L_7102006_SNP [dm3] 2L_7102006_SNP [dm6]	A	G	7.629e^-4	0.98	INTRON Pvf3
X	4197426	X_4197426_SNP [dm3] X_4303393_SNP [dm6]	A	T	7.642e^-4	0.98	INTERGENIC
2R	1343605	2R_1343605_SNP [dm3] 2R_5456100_SNP [dm6]	A	C	7.644e^-4	0.98	DOWNSTREAM laccase2 INTERGENIC
3R	20997330	3R_20997330_SNP [dm3] 3R_25171608_SNP [dm6]	G	A	7.645e^-4	0.98	SYNONYMOUS_CODING lobo	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25850627	3R_25850627_SNP [dm3] 3R_30024905_SNP [dm6]	A	G	7.650e^-4	0.98	INTRON Axn
2L	4347824	2L_4347824_SNP [dm3] 2L_4347824_SNP [dm6]	A	C	7.662e^-4	0.98	UPSTREAM CR44698 INTRON CR44697	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11294022	2L_11294022_SNP [dm3] 2L_11294022_SNP [dm6]	G	T	7.678e^-4	0.98	INTERGENIC
3R	26694348	3R_26694348_SNP [dm3] 3R_30868626_SNP [dm6]	C	A	7.678e^-4	0.98	SYNONYMOUS_CODING Cpr100A	TF binding site mE1_TFBS_cad
X	19499067	X_19499067_SNP [dm3] X_19605034_SNP [dm6]	C	T	7.681e^-4	0.98	UPSTREAM CG14207 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25253474	3R_25253474_SNP [dm3] 3R_29427752_SNP [dm6]	T	C	7.686e^-4	0.98	INTRON Ptp99A
3R	8346724	3R_8346724_SNP [dm3] 3R_12521002_SNP [dm6]	C	T	7.695e^-4	0.98	INTRON Octbeta3R
2L	5524466	2L_5524466_SNP [dm3] 2L_5524466_SNP [dm6]	A	G	7.700e^-4	0.98	SYNONYMOUS_CODING CG6907 UPSTREAM CG7371	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	3565213	3R_3565213_SNP [dm3] 3R_7739491_SNP [dm6]	T	A	7.707e^-4	0.98	NON_SYNONYMOUS_CODING CG43254 UPSTREAM CR44935
3L	11282895	3L_11282895_SNP [dm3] 3L_11289795_SNP [dm6]	T	C	7.716e^-4	0.98	INTRON CG6175
2L	4732664	2L_4732664_SNP [dm3] 2L_4732664_SNP [dm6]	A	C	7.722e^-4	0.98	NON_SYNONYMOUS_CODING CG15631
2R	7409350	2R_7409350_SNP [dm3] 2R_11521845_SNP [dm6]	T	C	7.724e^-4	0.98	INTERGENIC
2L	6006638	2L_6006638_SNP [dm3] 2L_6006638_SNP [dm6]	G	C	7.725e^-4	0.98	NON_SYNONYMOUS_CODING Gal DOWNSTREAM CR43866 & 1 other
3R	9817043	3R_9817043_SNP [dm3] 3R_13991321_SNP [dm6]	C	A	7.731e^-4	0.98	INTRON rdx	TF binding site mE1_TFBS_cad
2L	17364999	2L_17364999_INS [dm3] 2L_17364999_INS [dm6]	C	CC	7.733e^-4	0.98	DOWNSTREAM CG31804 INTERGENIC
2L	4733337	2L_4733337_SNP [dm3] 2L_4733337_SNP [dm6]	T	A	7.779e^-4	0.98	NON_SYNONYMOUS_CODING CG15631	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14286926	3R_14286926_SNP [dm3] 3R_18461204_SNP [dm6]	C	T	7.784e^-4	0.98	INTRON fru
3R	7868540	3R_7868540_SNP [dm3] 3R_12042818_SNP [dm6]	T	C	7.787e^-4	0.98	SPLICE_SITE_REGION CG14736 UTR_3_PRIME CG14736
3L	4839498	3L_4839498_SNP [dm3] 3L_4839498_SNP [dm6]	T	A	7.794e^-4	0.98	UTR_5_PRIME CG13707 INTRON CG13707
2L	13157050	2L_13157050_SNP [dm3] 2L_13157050_SNP [dm6]	C	A	7.796e^-4	0.98	INTERGENIC
3R	10689410	3R_10689410_SNP [dm3] 3R_14863688_SNP [dm6]	A	T	7.816e^-4	0.98	INTRON btsz
2L	7513048	2L_7513048_SNP [dm3] 2L_7513048_SNP [dm6]	T	A	7.846e^-4	0.98	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	21496861	3R_21496861_SNP [dm3] 3R_25671139_SNP [dm6]	G	T	7.854e^-4	0.98	INTRON Lgr3
3R	25322309	3R_25322309_SNP [dm3] 3R_29496587_SNP [dm6]	C	G	7.871e^-4	0.98	UTR_5_PRIME CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15930371	2L_15930371_SNP [dm3] 2L_15930371_SNP [dm6]	C	A	7.877e^-4	0.98	INTRON beat-Ib
2L	16108864	2L_16108864_SNP [dm3] 2L_16108864_SNP [dm6]	A	G	7.881e^-4	0.98	INTERGENIC
2R	14078198	2R_14078198_SNP [dm3] 2R_18190693_SNP [dm6]	G	A	7.900e^-4	0.98	INTRON CG33958
3L	22048841	3L_22048841_SNP [dm3] 3L_22055741_SNP [dm6]	T	A	7.904e^-4	0.98	INTRON Oct-TyrR	TF binding site BDTNP1_TFBS_da
X	12492903	X_12492903_SNP [dm3] X_12598870_SNP [dm6]	G	T	7.907e^-4	0.98	SYNONYMOUS_CODING Sec16	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5361642	3L_5361642_SNP [dm3] 3L_5368542_SNP [dm6]	C	T	7.915e^-4	0.98	UPSTREAM CG10635 & 1 other INTERGENIC
3R	816593	3R_816593_DEL [dm3] 3R_4990871_DEL [dm6]	TTGCAT	T	7.935e^-4	0.98	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
X	3811633	X_3811633_SNP [dm3] X_3917600_SNP [dm6]	G	T	7.949e^-4	0.98	INTRON CG42541
2L	14559518	2L_14559518_SNP [dm3] 2L_14559518_SNP [dm6]	G	A	7.954e^-4	0.98	UPSTREAM CR44854 INTERGENIC
X	14609774	X_14609774_SNP [dm3] X_14715741_SNP [dm6]	C	T	7.974e^-4	0.98	INTRON NetB
3L	750498	3L_750498_SNP [dm3] 3L_750498_SNP [dm6]	T	C	7.987e^-4	0.98	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
2L	3017740	2L_3017740_SNP [dm3] 2L_3017740_SNP [dm6]	G	A	7.996e^-4	0.98	UPSTREAM CG17264 INTRON CG17224
2L	14560564	2L_14560564_SNP [dm3] 2L_14560564_SNP [dm6]	A	C	7.998e^-4	0.98	UPSTREAM CR44855 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14478576	3L_14478576_SNP [dm3] 3L_14485476_SNP [dm6]	A	T	8.005e^-4	0.98	INTRON bbg
2L	6932576	2L_6932576_SNP [dm3] 2L_6932576_SNP [dm6]	A	T	8.006e^-4	0.98	UTR_3_PRIME CG18304 DOWNSTREAM Hrb27C & 1 other	TF binding site mE1_TFBS_cad
3R	25886845	3R_25886845_SNP [dm3] 3R_30061123_SNP [dm6]	T	C	8.007e^-4	0.98	INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	8344092	3R_8344092_SNP [dm3] 3R_12518370_SNP [dm6]	T	A	8.010e^-4	0.98	INTRON Octbeta3R	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	12203968	2R_12203968_SNP [dm3] 2R_16316463_SNP [dm6]	T	G	8.023e^-4	0.98	UTR_3_PRIME Nox & 1 other

By genomic position
Variant impact
Gene name

Temperature phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results