DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.051e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	2.8192	0.0931

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1850 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	5806121	X_5806121_SNP [dm3] X_5912088_SNP [dm6]	C	T	8.257e^-7	0.921	DOWNSTREAM CG12236 & 1 other INTRON CG12236	TF binding site mE1_TFBS_Trl
X	21906166	X_21906166_SNP [dm3] X_22504330_SNP [dm6]	A	G	2.198e^-6	0.921	UTR_3_PRIME l_1_G0196 DOWNSTREAM l_1_G0196 INTRON l_1_G0196
2L	15093700	2L_15093700_SNP [dm3] 2L_15093700_SNP [dm6]	C	G	2.473e^-6	0.921	INTRON CG15270
2L	15093713	2L_15093713_SNP [dm3] 2L_15093713_SNP [dm6]	A	T	2.473e^-6	0.921	INTRON CG15270
3L	17296210	3L_17296210_SNP [dm3] 3L_17303110_SNP [dm6]	C	G	4.441e^-6	0.921	INTERGENIC
3L	1937583	3L_1937583_SNP [dm3] 3L_1937583_SNP [dm6]	G	A	4.459e^-6	0.921	INTRON CG5687
2R	16400241	2R_16400241_SNP [dm3] 2R_20512736_SNP [dm6]	G	T	4.916e^-6	0.921	UTR_3_PRIME CG13426 DOWNSTREAM CR44649
3R	10956114	3R_10956114_DEL [dm3] 3R_15130392_DEL [dm6]	AT	C	5.799e^-6	0.921	DOWNSTREAM mir-2493 INTRON CG42788
X	5019812	X_5019812_SNP [dm3] X_5125779_SNP [dm6]	A	C	7.038e^-6	0.921	INTRON rg & 1 other
3L	14151102	3L_14151102_SNP [dm3] 3L_14158002_SNP [dm6]	T	A	7.585e^-6	0.921	INTERGENIC	regulatory region REDfly_CRMs
2L	772437	2L_772437_SNP [dm3] 2L_772437_SNP [dm6]	C	T	8.196e^-6	0.921	UPSTREAM CR44614 INTERGENIC
X	6786988	X_6786988_SNP [dm3] X_6892955_SNP [dm6]	T	G	8.828e^-6	0.921	INTERGENIC
3L	9087349	3L_9087349_SNP [dm3] 3L_9094249_SNP [dm6]	A	T	9.968e^-6	0.921	INTRON CG32032
3L	2669602	3L_2669602_SNP [dm3] 3L_2669602_SNP [dm6]	A	G	1.025e^-5	0.921	INTRON Fife
2R	20206041	2R_20206041_SNP [dm3] 2R_24318518_SNP [dm6]	G	T	1.030e^-5	0.921	INTERGENIC
2L	769955	2L_769955_SNP [dm3] 2L_769955_SNP [dm6]	A	T	1.128e^-5	0.921	INTERGENIC
2R	10348270	2R_10348270_SNP [dm3] 2R_14460765_SNP [dm6]	A	G	1.219e^-5	0.921	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	3816876	2L_3816876_SNP [dm3] 2L_3816876_SNP [dm6]	T	C	1.284e^-5	0.921	UPSTREAM CR44077 DOWNSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	18806907	X_18806907_SNP [dm3] X_18912874_SNP [dm6]	G	A	1.358e^-5	0.921	DOWNSTREAM CR44708 INTERGENIC
3R	15093894	3R_15093894_SNP [dm3] 3R_19268172_SNP [dm6]	T	C	1.377e^-5	0.921	INTERGENIC
2L	16222318	2L_16222318_SNP [dm3] 2L_16222318_SNP [dm6]	A	G	1.445e^-5	0.921	INTERGENIC
2R	12407045	2R_12407045_SNP [dm3] 2R_16519540_SNP [dm6]	C	A	1.466e^-5	0.921	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	4460926	2L_4460926_SNP [dm3] 2L_4460926_SNP [dm6]	T	G	1.569e^-5	0.921	SYNONYMOUS_CODING CG15435 DOWNSTREAM CG15443	TF binding site mE1_TFBS_sens
2L	769970	2L_769970_SNP [dm3] 2L_769970_SNP [dm6]	A	G	1.600e^-5	0.921	INTERGENIC
2R	20209968	2R_20209968_SNP [dm3] 2R_24322445_SNP [dm6]	T	A	1.601e^-5	0.921	INTERGENIC
2L	769925	2L_769925_SNP [dm3] 2L_769925_SNP [dm6]	C	T	1.662e^-5	0.921	INTERGENIC
2L	769928	2L_769928_SNP [dm3] 2L_769928_SNP [dm6]	A	G	1.662e^-5	0.921	INTERGENIC
2L	769946	2L_769946_SNP [dm3] 2L_769946_SNP [dm6]	A	C	1.662e^-5	0.921	INTERGENIC
2L	769951	2L_769951_SNP [dm3] 2L_769951_SNP [dm6]	T	A	1.662e^-5	0.921	INTERGENIC
2L	769958	2L_769958_SNP [dm3] 2L_769958_SNP [dm6]	G	T	1.662e^-5	0.921	INTERGENIC
3L	7771687	3L_7771687_SNP [dm3] 3L_7778587_SNP [dm6]	C	T	1.779e^-5	0.921	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_chinmo
2L	3815753	2L_3815753_SNP [dm3] 2L_3815753_SNP [dm6]	G	A	1.936e^-5	0.921	EXON CR44076	regulatory region REDfly_CRMs
3L	1937584	3L_1937584_SNP [dm3] 3L_1937584_SNP [dm6]	A	G	2.030e^-5	0.921	INTRON CG5687
X	14260616	X_14260616_SNP [dm3] X_14366583_SNP [dm6]	A	T	2.123e^-5	0.921	INTRON dpr8
3R	11612115	3R_11612115_SNP [dm3] 3R_15786393_SNP [dm6]	T	C	2.203e^-5	0.921	UPSTREAM CG9590 INTERGENIC
2R	20210450	2R_20210450_INS [dm3] 2R_24322927_INS [dm6]	T	TT	2.204e^-5	0.921	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9046152	3L_9046152_SNP [dm3] 3L_9053052_SNP [dm6]	C	T	2.243e^-5	0.921	INTRON Argk	TF binding site mE1_TFBS_HSA
2R	20209952	2R_20209952_SNP [dm3] 2R_24322429_SNP [dm6]	G	A	2.254e^-5	0.921	INTERGENIC
X	14260187	X_14260187_SNP [dm3] X_14366154_SNP [dm6]	A	G	2.344e^-5	0.921	INTRON dpr8
2L	6730043	2L_6730043_SNP [dm3] 2L_6730043_SNP [dm6]	A	G	2.347e^-5	0.921	SPLICE_SITE_REGION Liprin-alpha INTRON Liprin-alpha
2L	7785317	2L_7785317_SNP [dm3] 2L_7785317_SNP [dm6]	G	A	2.378e^-5	0.921	NON_SYNONYMOUS_CODING CG7154 DOWNSTREAM CG7149	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10809083	X_10809083_SNP [dm3] X_10915050_SNP [dm6]	G	A	2.642e^-5	0.921	INTRON CG43901
3L	18166679	3L_18166679_SNP [dm3] 3L_18173579_SNP [dm6]	T	C	2.799e^-5	0.921	INTRON W	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7835242	3L_7835242_SNP [dm3] 3L_7842142_SNP [dm6]	A	T	2.806e^-5	0.921	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17545065	2L_17545065_SNP [dm3] 2L_17545065_SNP [dm6]	A	T	2.983e^-5	0.921	INTERGENIC
3L	18168486	3L_18168486_SNP [dm3] 3L_18175386_SNP [dm6]	T	A	3.011e^-5	0.921	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15971164	3R_15971164_SNP [dm3] 3R_20145442_SNP [dm6]	A	G	3.130e^-5	0.921	INTERGENIC
2L	2782693	2L_2782693_SNP [dm3] 2L_2782693_SNP [dm6]	A	G	3.310e^-5	0.921	UTR_3_PRIME Syt1
2L	1364571	2L_1364571_SNP [dm3] 2L_1364571_SNP [dm6]	C	T	3.358e^-5	0.921	INTERGENIC
2L	1364502	2L_1364502_INS [dm3] 2L_1364502_INS [dm6]	T	TGCTGT	3.504e^-5	0.921	INTERGENIC
2R	7075296	2R_7075296_SNP [dm3] 2R_11187791_SNP [dm6]	G	C	3.929e^-5	0.921	INTRON shn	TF binding site BDTNP1_TFBS_twi
3R	17186726	3R_17186726_SNP [dm3] 3R_21361004_SNP [dm6]	C	A	4.035e^-5	0.921	SYNONYMOUS_CODING pre-mod_mdg4_-T UTR_5_PRIME pre-mod_mdg4_-Z INTRON mod_mdg4_
X	18807060	X_18807060_SNP [dm3] X_18913027_SNP [dm6]	A	G	4.068e^-5	0.921	DOWNSTREAM CR44708 INTERGENIC
3L	2657947	3L_2657947_SNP [dm3] 3L_2657947_SNP [dm6]	T	C	4.080e^-5	0.921	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3122711	2L_3122711_SNP [dm3] 2L_3122711_SNP [dm6]	A	C	4.237e^-5	0.921	INTRON toc
2L	1055199	2L_1055199_SNP [dm3] 2L_1055199_SNP [dm6]	C	T	4.261e^-5	0.921	INTRON S	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15502775	X_15502775_DEL [dm3] X_15608742_DEL [dm6]	AC	A	4.309e^-5	0.921	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7834801	3L_7834801_SNP [dm3] 3L_7841701_SNP [dm6]	G	A	4.567e^-5	0.921	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	18806982	X_18806982_SNP [dm3] X_18912949_SNP [dm6]	C	A	4.727e^-5	0.921	DOWNSTREAM CR44708 INTERGENIC
2R	13923938	2R_13923938_SNP [dm3] 2R_18036433_SNP [dm6]	C	T	4.736e^-5	0.921	INTERGENIC
2L	17533554	2L_17533554_SNP [dm3] 2L_17533554_SNP [dm6]	A	G	4.814e^-5	0.921	INTERGENIC
3R	16891998	3R_16891998_SNP [dm3] 3R_21066276_SNP [dm6]	T	A	4.860e^-5	0.921	INTRON AnxB9	TF binding site mE1_TFBS_Trl
2R	10893903	2R_10893903_SNP [dm3] 2R_15006398_SNP [dm6]	A	G	4.870e^-5	0.921	INTERGENIC
2L	12575800	2L_12575800_SNP [dm3] 2L_12575800_SNP [dm6]	G	A	5.037e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	21906190	X_21906190_SNP [dm3] X_22504354_SNP [dm6]	A	T	5.059e^-5	0.921	UTR_3_PRIME l_1_G0196 DOWNSTREAM l_1_G0196 INTRON l_1_G0196
2R	16115203	2R_16115203_SNP [dm3] 2R_20227698_SNP [dm6]	T	A	5.357e^-5	0.921	INTERGENIC
2L	3815739	2L_3815739_SNP [dm3] 2L_3815739_SNP [dm6]	C	G	5.382e^-5	0.921	EXON CR44076	regulatory region REDfly_CRMs
3L	3039454	3L_3039454_SNP [dm3] 3L_3039454_SNP [dm6]	T	C	5.436e^-5	0.921	SYNONYMOUS_CODING CG2162	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	12969385	3L_12969385_SNP [dm3] 3L_12976285_SNP [dm6]	A	T	5.553e^-5	0.921	INTERGENIC
X	10021062	X_10021062_SNP [dm3] X_10127029_SNP [dm6]	A	C	5.613e^-5	0.921	INTRON CR44894 & 1 other
3R	9151836	3R_9151836_SNP [dm3] 3R_13326114_SNP [dm6]	A	G	5.637e^-5	0.921	INTERGENIC
2L	2125859	2L_2125859_SNP [dm3] 2L_2125859_SNP [dm6]	G	T	5.670e^-5	0.921	INTERGENIC
3L	3147910	3L_3147910_SNP [dm3] 3L_3147910_SNP [dm6]	G	A	5.699e^-5	0.921	SYNONYMOUS_CODING CG12082 UPSTREAM BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	15021856	2L_15021856_SNP [dm3] 2L_15021856_SNP [dm6]	C	T	5.737e^-5	0.921	INTRON GABA-B-R1
2L	1364507	2L_1364507_SNP [dm3] 2L_1364507_SNP [dm6]	G	C	5.789e^-5	0.921	INTERGENIC
2L	1364682	2L_1364682_SNP [dm3] 2L_1364682_SNP [dm6]	C	A	5.789e^-5	0.921	INTERGENIC
2L	1364687	2L_1364687_SNP [dm3] 2L_1364687_SNP [dm6]	C	A	5.789e^-5	0.921	INTERGENIC
3R	15971158	3R_15971158_SNP [dm3] 3R_20145436_SNP [dm6]	A	T	5.851e^-5	0.921	INTERGENIC
3R	16892077	3R_16892077_SNP [dm3] 3R_21066355_SNP [dm6]	C	G	5.861e^-5	0.921	INTRON AnxB9	TF binding site mE1_TFBS_Trl
X	7514597	X_7514597_SNP [dm3] X_7620564_SNP [dm6]	C	T	5.947e^-5	0.921	INTRON ct	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15327816	2R_15327816_SNP [dm3] 2R_19440311_SNP [dm6]	T	C	6.011e^-5	0.921	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_sens
3L	10895087	3L_10895087_INS [dm3] 3L_10901987_INS [dm6]	C	CTATAGATTCA...	6.049e^-5	0.921	INTERGENIC
X	11076656	X_11076656_SNP [dm3] X_11182623_SNP [dm6]	T	A	6.082e^-5	0.921	UPSTREAM CG15200 INTERGENIC
2L	1364487	2L_1364487_SNP [dm3] 2L_1364487_SNP [dm6]	C	T	6.191e^-5	0.921	INTERGENIC
3L	3171832	3L_3171832_SNP [dm3] 3L_3171832_SNP [dm6]	C	G	6.336e^-5	0.921	NON_SYNONYMOUS_CODING CG14963 DOWNSTREAM CG32281 & 2 others
3R	13485692	3R_13485692_SNP [dm3] 3R_17659970_SNP [dm6]	C	A	6.496e^-5	0.921	INTRON CG14322
2R	18845660	2R_18845660_SNP [dm3] 2R_22958137_SNP [dm6]	A	C	6.537e^-5	0.921	UPSTREAM CR44780 INTERGENIC
2L	7911801	2L_7911801_SNP [dm3] 2L_7911801_SNP [dm6]	C	T	6.543e^-5	0.921	INTRON Snoo
3L	6586109	3L_6586109_SNP [dm3] 3L_6593009_SNP [dm6]	A	T	6.616e^-5	0.921	UTR_3_PRIME CG18769 DOWNSTREAM CG18769 & 1 other	transposable element FlyBase
X	20528986	X_20528986_SNP [dm3] X_20657959_SNP [dm6]	G	C	6.680e^-5	0.921	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
2L	3629942	2L_3629942_SNP [dm3] 2L_3629942_SNP [dm6]	C	T	6.687e^-5	0.921	INTRON for
X	19224666	X_19224666_SNP [dm3] X_19330633_SNP [dm6]	G	A	6.802e^-5	0.921	INTRON nAChRalpha7	transposable element FlyBase
2L	15114292	2L_15114292_SNP [dm3] 2L_15114292_SNP [dm6]	C	T	6.805e^-5	0.921	SPLICE_SITE_REGION stc INTRON stc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	6244360	2L_6244360_SNP [dm3] 2L_6244360_SNP [dm6]	T	A	6.853e^-5	0.921	INTERGENIC
3L	4740113	3L_4740113_SNP [dm3] 3L_4740113_SNP [dm6]	G	T	6.876e^-5	0.921	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14302410	X_14302410_SNP [dm3] X_14408377_SNP [dm6]	A	T	6.876e^-5	0.921	INTRON dpr8
X	5554035	X_5554035_SNP [dm3] X_5660002_SNP [dm6]	A	C	6.974e^-5	0.921	INTRON CG42265
3L	10184720	3L_10184720_SNP [dm3] 3L_10191620_SNP [dm6]	A	G	7.116e^-5	0.921	SYNONYMOUS_CODING ect
3R	9610534	3R_9610534_SNP [dm3] 3R_13784812_SNP [dm6]	C	T	7.248e^-5	0.921	SYNONYMOUS_CODING Dip-B DOWNSTREAM CR45590	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12237355	X_12237355_SNP [dm3] X_12343322_SNP [dm6]	G	A	7.268e^-5	0.921	INTERGENIC
2L	3272651	2L_3272651_SNP [dm3] 2L_3272651_SNP [dm6]	T	C	7.394e^-5	0.921	DOWNSTREAM CG3347 INTERGENIC
2L	12387779	2L_12387779_SNP [dm3] 2L_12387779_SNP [dm6]	G	C	7.412e^-5	0.921	INTRON bru-2
2L	6507026	2L_6507026_SNP [dm3] 2L_6507026_SNP [dm6]	C	T	7.560e^-5	0.921	DOWNSTREAM CR44775 INTRON CG31637
2R	17933252	2R_17933252_SNP [dm3] 2R_22045747_SNP [dm6]	C	T	7.689e^-5	0.921	INTERGENIC
3L	6465763	3L_6465763_SNP [dm3] 3L_6472663_SNP [dm6]	T	A	7.692e^-5	0.921	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7269355	2L_7269355_SNP [dm3] 2L_7269355_SNP [dm6]	C	T	7.750e^-5	0.921	INTRON Wnt4
2L	8230692	2L_8230692_SNP [dm3] 2L_8230692_SNP [dm6]	T	G	7.835e^-5	0.921	UPSTREAM Pvr INTRON Pvr
2L	2663711	2L_2663711_SNP [dm3] 2L_2663711_SNP [dm6]	T	A	7.901e^-5	0.921	INTERGENIC
2L	2844179	2L_2844179_SNP [dm3] 2L_2844179_SNP [dm6]	C	T	8.067e^-5	0.921	NON_SYNONYMOUS_CODING CG18558 DOWNSTREAM CG18557	TF binding site mE1_TFBS_cad
2L	5305033	2L_5305033_SNP [dm3] 2L_5305033_SNP [dm6]	C	T	8.122e^-5	0.921	UPSTREAM vri INTRON vri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	18806965	X_18806965_SNP [dm3] X_18912932_SNP [dm6]	A	G	8.332e^-5	0.921	DOWNSTREAM CR44708 INTERGENIC
2R	15264252	2R_15264252_INS [dm3] 2R_19376747_INS [dm6]	G	GTCAGTTCGGTG...	8.354e^-5	0.921	UTR_5_PRIME CG10062 INTRON CG10062
2L	17533351	2L_17533351_SNP [dm3] 2L_17533351_SNP [dm6]	G	A	8.488e^-5	0.921	INTERGENIC
2L	17533498	2L_17533498_SNP [dm3] 2L_17533498_SNP [dm6]	A	T	8.488e^-5	0.921	INTERGENIC
2L	12902689	2L_12902689_SNP [dm3] 2L_12902689_SNP [dm6]	A	G	8.595e^-5	0.921	INTERGENIC
3R	16892157	3R_16892157_SNP [dm3] 3R_21066435_SNP [dm6]	T	C	8.692e^-5	0.921	INTRON AnxB9
3R	9310781	3R_9310781_SNP [dm3] 3R_13485059_SNP [dm6]	C	T	8.692e^-5	0.921	INTERGENIC
2L	17538675	2L_17538675_SNP [dm3] 2L_17538675_SNP [dm6]	A	C	8.758e^-5	0.921	INTERGENIC
X	17762953	X_17762953_SNP [dm3] X_17868920_SNP [dm6]	C	A	8.820e^-5	0.921	INTRON mnb	TF binding site mE1_TFBS_cad
3L	8363723	3L_8363723_SNP [dm3] 3L_8370623_SNP [dm6]	C	T	8.990e^-5	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12969387	3L_12969387_SNP [dm3] 3L_12976287_SNP [dm6]	C	T	8.992e^-5	0.921	INTERGENIC
2L	17533557	2L_17533557_SNP [dm3] 2L_17533557_SNP [dm6]	A	C	8.998e^-5	0.921	INTERGENIC
2R	5716973	2R_5716973_SNP [dm3] 2R_9829468_SNP [dm6]	A	T	9.199e^-5	0.921	NON_SYNONYMOUS_CODING hebe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16892014	3R_16892014_SNP [dm3] 3R_21066292_SNP [dm6]	C	A	9.278e^-5	0.921	INTRON AnxB9	TF binding site mE1_TFBS_Trl
2L	17533601	2L_17533601_SNP [dm3] 2L_17533601_SNP [dm6]	A	G	9.442e^-5	0.921	INTERGENIC
X	20208419	X_20208419_SNP [dm3] X_20337392_SNP [dm6]	T	A	9.740e^-5	0.921	INTERGENIC
2L	16496859	2L_16496859_SNP [dm3] 2L_16496859_SNP [dm6]	T	A	9.946e^-5	0.921	UTR_5_PRIME Tpr2 INTRON Tpr2
3R	5085228	3R_5085228_SNP [dm3] 3R_9259506_SNP [dm6]	C	A	1.002e^-4	0.921	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15010576	3R_15010576_SNP [dm3] 3R_19184854_SNP [dm6]	A	T	1.009e^-4	0.921	INTRON CG31475
X	7234307	X_7234307_SNP [dm3] X_7340274_SNP [dm6]	T	C	1.014e^-4	0.921	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
X	18213574	X_18213574_SNP [dm3] X_18319541_SNP [dm6]	A	G	1.020e^-4	0.921	INTRON CG6023
3L	2654355	3L_2654355_SNP [dm3] 3L_2654355_SNP [dm6]	A	C	1.022e^-4	0.921	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup
X	7234249	X_7234249_SNP [dm3] X_7340216_SNP [dm6]	A	C	1.024e^-4	0.921	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
X	7234267	X_7234267_SNP [dm3] X_7340234_SNP [dm6]	A	G	1.024e^-4	0.921	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
X	15502774	X_15502774_SNP [dm3] X_15608741_SNP [dm6]	G	A	1.058e^-4	0.921	INTRON sog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1061922	3L_1061922_SNP [dm3] 3L_1061922_SNP [dm6]	A	G	1.059e^-4	0.921	INTRON bab1
3L	10511676	3L_10511676_SNP [dm3] 3L_10518576_SNP [dm6]	T	A	1.062e^-4	0.921	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16513284	X_16513284_SNP [dm3] X_16619251_SNP [dm6]	T	G	1.064e^-4	0.921	INTRON CG9782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16513365	X_16513365_SNP [dm3] X_16619332_SNP [dm6]	G	A	1.064e^-4	0.921	INTRON CG9782	TF binding site BDTNP1_TFBS_dl
2L	10460240	2L_10460240_SNP [dm3] 2L_10460240_SNP [dm6]	C	T	1.067e^-4	0.921	SYNONYMOUS_CODING LM408
3R	13485689	3R_13485689_SNP [dm3] 3R_17659967_SNP [dm6]	T	C	1.069e^-4	0.921	INTRON CG14322
3R	13485703	3R_13485703_SNP [dm3] 3R_17659981_SNP [dm6]	C	T	1.069e^-4	0.921	INTRON CG14322
3R	13485704	3R_13485704_SNP [dm3] 3R_17659982_SNP [dm6]	A	T	1.069e^-4	0.921	INTRON CG14322
3R	13485710	3R_13485710_SNP [dm3] 3R_17659988_SNP [dm6]	G	T	1.069e^-4	0.921	INTRON CG14322
2L	11932460	2L_11932460_SNP [dm3] 2L_11932460_SNP [dm6]	G	A	1.073e^-4	0.921	INTERGENIC
X	14298340	X_14298340_SNP [dm3] X_14404307_SNP [dm6]	C	A	1.083e^-4	0.921	INTRON dpr8
3L	4082494	3L_4082494_SNP [dm3] 3L_4082494_SNP [dm6]	C	A	1.090e^-4	0.921	SYNONYMOUS_CODING Gad1
3R	20254450	3R_20254450_SNP [dm3] 3R_24428728_SNP [dm6]	T	G	1.097e^-4	0.921	INTRON nAChRalpha1
3R	26657673	3R_26657673_SNP [dm3] 3R_30831951_SNP [dm6]	T	G	1.099e^-4	0.921	INTRON CG15544
3R	18702158	3R_18702158_DEL [dm3] 3R_22876436_DEL [dm6]	AA	A	1.106e^-4	0.921	INTERGENIC
3R	4376881	3R_4376881_SNP [dm3] 3R_8551159_SNP [dm6]	A	G	1.109e^-4	0.921	INTERGENIC
3R	3329485	3R_3329485_SNP [dm3] 3R_7503763_SNP [dm6]	A	G	1.112e^-4	0.921	INTRON alpha-Est9
2L	16373576	2L_16373576_SNP [dm3] 2L_16373576_SNP [dm6]	C	T	1.115e^-4	0.921	INTERGENIC
2L	770295	2L_770295_SNP [dm3] 2L_770295_SNP [dm6]	T	A	1.117e^-4	0.921	INTERGENIC
2L	10117804	2L_10117804_SNP [dm3] 2L_10117804_SNP [dm6]	G	A	1.118e^-4	0.921	INTRON CG44153 & 1 other
2L	3051032	2L_3051032_SNP [dm3] 2L_3051032_SNP [dm6]	C	A	1.135e^-4	0.921	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo
3R	14465834	3R_14465834_INS [dm3] 3R_18640112_INS [dm6]	T	TAACTAAATCCGAGT...	1.143e^-4	0.921	INTRON qin & 1 other
2L	17867054	2L_17867054_SNP [dm3] 2L_17867054_SNP [dm6]	G	A	1.144e^-4	0.921	INTRON CadN2
3L	16200711	3L_16200711_SNP [dm3] 3L_16207611_SNP [dm6]	T	C	1.149e^-4	0.921	INTERGENIC
X	20318721	X_20318721_SNP [dm3] X_20447694_SNP [dm6]	A	G	1.158e^-4	0.921	DOWNSTREAM CG42578 INTERGENIC
2L	15632177	2L_15632177_SNP [dm3] 2L_15632177_SNP [dm6]	T	A	1.170e^-4	0.921	UTR_3_PRIME CG18480
2L	15632228	2L_15632228_SNP [dm3] 2L_15632228_SNP [dm6]	T	A	1.170e^-4	0.921	UTR_3_PRIME CG18480
2L	17540596	2L_17540596_SNP [dm3] 2L_17540596_SNP [dm6]	G	T	1.172e^-4	0.921	INTERGENIC
X	10809164	X_10809164_SNP [dm3] X_10915131_SNP [dm6]	C	G	1.180e^-4	0.921	INTRON CG43901
2R	20140338	2R_20140338_SNP [dm3] 2R_24252815_SNP [dm6]	T	C	1.199e^-4	0.921	SYNONYMOUS_CODING nord	TF binding site mE1_TFBS_chinmo
2L	2125610	2L_2125610_SNP [dm3] 2L_2125610_SNP [dm6]	T	G	1.214e^-4	0.921	INTERGENIC
3R	5214819	3R_5214819_SNP [dm3] 3R_9389097_SNP [dm6]	C	T	1.217e^-4	0.921	INTRON FER
2R	16737721	2R_16737721_SNP [dm3] 2R_20850216_SNP [dm6]	G	A	1.239e^-4	0.921	UTR_3_PRIME CG9993 UPSTREAM CG17999	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18640485	3R_18640485_SNP [dm3] 3R_22814763_SNP [dm6]	C	A	1.240e^-4	0.921	SYNONYMOUS_CODING CG13840
2L	17539870	2L_17539870_SNP [dm3] 2L_17539870_SNP [dm6]	C	G	1.240e^-4	0.921	INTERGENIC
2L	9888878	2L_9888878_SNP [dm3] 2L_9888878_SNP [dm6]	G	T	1.247e^-4	0.921	SYNONYMOUS_CODING FKBP59	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4427987	2L_4427987_SNP [dm3] 2L_4427987_SNP [dm6]	A	G	1.250e^-4	0.921	INTRON CG15431
2L	4428074	2L_4428074_SNP [dm3] 2L_4428074_SNP [dm6]	A	C	1.250e^-4	0.921	INTRON CG15431
X	17618494	X_17618494_SNP [dm3] X_17724461_SNP [dm6]	C	A	1.261e^-4	0.921	INTRON CG42684
2R	18552188	2R_18552188_SNP [dm3] 2R_22664683_SNP [dm6]	T	C	1.264e^-4	0.921	UPSTREAM CG42867 DOWNSTREAM CG4250 INTERGENIC
3R	23803289	3R_23803289_SNP [dm3] 3R_27977567_SNP [dm6]	A	C	1.279e^-4	0.921	INTRON betaTub97EF
3R	12398523	3R_12398523_SNP [dm3] 3R_16572801_SNP [dm6]	A	T	1.286e^-4	0.921	NON_SYNONYMOUS_CODING CG14891 DOWNSTREAM CG14903	TF binding site mE1_TFBS_D
2L	15390095	2L_15390095_SNP [dm3] 2L_15390095_SNP [dm6]	C	T	1.293e^-4	0.921	INTERGENIC
2L	2782662	2L_2782662_SNP [dm3] 2L_2782662_SNP [dm6]	A	T	1.293e^-4	0.921	UTR_3_PRIME Syt1
3R	14444722	3R_14444722_SNP [dm3] 3R_18619000_SNP [dm6]	T	G	1.293e^-4	0.921	INTRON qin & 1 other
2R	8484309	2R_8484309_SNP [dm3] 2R_12596804_SNP [dm6]	C	T	1.314e^-4	0.921	INTRON Amph
3L	9611844	3L_9611844_SNP [dm3] 3L_9618744_SNP [dm6]	G	A	1.323e^-4	0.921	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
3R	4140884	3R_4140884_SNP [dm3] 3R_8315162_SNP [dm6]	A	T	1.328e^-4	0.921	NON_SYNONYMOUS_CODING Coq2 DOWNSTREAM eIF4AIII	TF binding site mE1_TFBS_inv
3L	18166693	3L_18166693_SNP [dm3] 3L_18173593_SNP [dm6]	C	T	1.334e^-4	0.921	INTRON W	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12384171	3R_12384171_SNP [dm3] 3R_16558449_SNP [dm6]	C	T	1.334e^-4	0.921	INTRON CG42342
3L	2377966	3L_2377966_INS [dm3] 3L_2377966_INS [dm6]	T	TT	1.344e^-4	0.921	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7702581	3L_7702581_SNP [dm3] 3L_7709481_SNP [dm6]	C	T	1.357e^-4	0.921	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7702595	3L_7702595_SNP [dm3] 3L_7709495_SNP [dm6]	C	G	1.357e^-4	0.921	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7702599	3L_7702599_SNP [dm3] 3L_7709499_SNP [dm6]	C	T	1.357e^-4	0.921	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1056926	2L_1056926_SNP [dm3] 2L_1056926_SNP [dm6]	C	A	1.365e^-4	0.921	INTRON S	TF binding site BDTNP1_TFBS_da
2L	17533468	2L_17533468_SNP [dm3] 2L_17533468_SNP [dm6]	C	T	1.368e^-4	0.921	INTERGENIC
2L	11361044	2L_11361044_SNP [dm3] 2L_11361044_SNP [dm6]	A	G	1.372e^-4	0.921	INTRON salr	regulatory region REDfly_CRMs
2L	5954470	2L_5954470_SNP [dm3] 2L_5954470_SNP [dm6]	T	C	1.376e^-4	0.921	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5954494	2L_5954494_SNP [dm3] 2L_5954494_SNP [dm6]	C	G	1.376e^-4	0.921	DOWNSTREAM CG13999 INTRON CG9044	TF binding site mE1_TFBS_inv
2L	5954529	2L_5954529_SNP [dm3] 2L_5954529_SNP [dm6]	T	G	1.376e^-4	0.921	DOWNSTREAM CG13999 INTRON CG9044	TF binding site mE1_TFBS_inv
2L	5954530	2L_5954530_SNP [dm3] 2L_5954530_SNP [dm6]	A	T	1.376e^-4	0.921	DOWNSTREAM CG13999 INTRON CG9044	TF binding site mE1_TFBS_inv
2L	5954558	2L_5954558_SNP [dm3] 2L_5954558_SNP [dm6]	A	C	1.376e^-4	0.921	NON_SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
2L	5954568	2L_5954568_SNP [dm3] 2L_5954568_SNP [dm6]	A	T	1.376e^-4	0.921	NON_SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
2L	5954580	2L_5954580_SNP [dm3] 2L_5954580_SNP [dm6]	T	C	1.376e^-4	0.921	NON_SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
2L	5954581	2L_5954581_SNP [dm3] 2L_5954581_SNP [dm6]	C	T	1.376e^-4	0.921	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
2R	18152043	2R_18152043_SNP [dm3] 2R_22264538_SNP [dm6]	G	T	1.387e^-4	0.921	INTRON dve
X	16513525	X_16513525_SNP [dm3] X_16619492_SNP [dm6]	A	T	1.388e^-4	0.921	INTRON CG9782
X	16513541	X_16513541_SNP [dm3] X_16619508_SNP [dm6]	G	T	1.388e^-4	0.921	INTRON CG9782
2R	15380522	2R_15380522_SNP [dm3] 2R_19493017_SNP [dm6]	C	G	1.396e^-4	0.921	SYNONYMOUS_CODING Rep DOWNSTREAM hpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16659210	3L_16659210_SNP [dm3] 3L_16666110_SNP [dm6]	G	A	1.405e^-4	0.921	INTRON Galphaf
2R	12460069	2R_12460069_SNP [dm3] 2R_16572564_SNP [dm6]	T	C	1.409e^-4	0.921	NON_SYNONYMOUS_CODING CG4927
3L	2353053	3L_2353053_SNP [dm3] 3L_2353053_SNP [dm6]	T	A	1.416e^-4	0.921	INTERGENIC
X	12237334	X_12237334_SNP [dm3] X_12343301_SNP [dm6]	T	G	1.433e^-4	0.921	INTERGENIC
3R	9225424	3R_9225424_DEL [dm3] 3R_13399702_DEL [dm6]	ATATA	A	1.435e^-4	0.921	INTRON CG9796	TF binding site mE1_TFBS_cad
X	17618806	X_17618806_SNP [dm3] X_17724773_SNP [dm6]	A	T	1.444e^-4	0.921	INTRON CG42684
X	17618838	X_17618838_SNP [dm3] X_17724805_SNP [dm6]	G	T	1.444e^-4	0.921	INTRON CG42684
2R	6975650	2R_6975650_SNP [dm3] 2R_11088145_SNP [dm6]	A	G	1.452e^-4	0.921	UTR_3_PRIME CG43188 INTRON luna
3L	1575193	3L_1575193_SNP [dm3] 3L_1575193_SNP [dm6]	C	T	1.455e^-4	0.921	SYNONYMOUS_CODING CG12004 DOWNSTREAM CG12004
3L	857694	3L_857694_SNP [dm3] 3L_857694_SNP [dm6]	A	T	1.467e^-4	0.921	UPSTREAM dpr20 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
2L	17539250	2L_17539250_SNP [dm3] 2L_17539250_SNP [dm6]	T	A	1.472e^-4	0.921	INTERGENIC
3R	9151848	3R_9151848_SNP [dm3] 3R_13326126_SNP [dm6]	A	G	1.473e^-4	0.921	INTERGENIC
2R	9466425	2R_9466425_SNP [dm3] 2R_13578920_SNP [dm6]	C	T	1.487e^-4	0.921	EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17533116	2L_17533116_SNP [dm3] 2L_17533116_SNP [dm6]	C	A	1.490e^-4	0.921	UPSTREAM CG15145 INTERGENIC
2R	17062887	2R_17062887_SNP [dm3] 2R_21175382_SNP [dm6]	C	T	1.498e^-4	0.921	UTR_5_PRIME Pu DOWNSTREAM Xpd	TF binding site mE1_TFBS_Trl
2R	17063126	2R_17063126_SNP [dm3] 2R_21175621_SNP [dm6]	C	T	1.498e^-4	0.921	SYNONYMOUS_CODING Pu
2R	17063408	2R_17063408_SNP [dm3] 2R_21175903_SNP [dm6]	C	T	1.498e^-4	0.921	INTRON Pu
2R	9606880	2R_9606880_SNP [dm3] 2R_13719375_SNP [dm6]	A	G	1.505e^-4	0.921	INTRON fas
3L	4718575	3L_4718575_SNP [dm3] 3L_4718575_SNP [dm6]	C	T	1.508e^-4	0.921	INTRON RhoGEF64C
3L	10633874	3L_10633874_SNP [dm3] 3L_10640774_SNP [dm6]	G	T	1.518e^-4	0.921	UTR_3_PRIME CG32066 DOWNSTREAM CG18628
2R	12236088	2R_12236088_SNP [dm3] 2R_16348583_SNP [dm6]	C	A	1.524e^-4	0.921	UPSTREAM CG15710 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3112225	3L_3112225_SNP [dm3] 3L_3112225_SNP [dm6]	T	G	1.538e^-4	0.921	NON_SYNONYMOUS_CODING CG45067 UPSTREAM CG45066
X	12237335	X_12237335_SNP [dm3] X_12343302_SNP [dm6]	T	C	1.541e^-4	0.921	INTERGENIC
3R	15010618	3R_15010618_SNP [dm3] 3R_19184896_SNP [dm6]	T	G	1.543e^-4	0.921	INTRON CG31475
X	22063718	X_22063718_SNP [dm3] X_22661882_SNP [dm6]	C	T	1.550e^-4	0.921	INTRON CR44997
X	8155409	X_8155409_SNP [dm3] X_8261376_SNP [dm6]	C	G	1.551e^-4	0.921	INTRON CG1632
3L	2669599	3L_2669599_SNP [dm3] 3L_2669599_SNP [dm6]	G	A	1.551e^-4	0.921	INTRON Fife
3R	9865872	3R_9865872_SNP [dm3] 3R_14040150_SNP [dm6]	G	T	1.557e^-4	0.921	INTERGENIC
2R	18741176	2R_18741176_SNP [dm3] 2R_22853653_SNP [dm6]	G	A	1.571e^-4	0.921	SYNONYMOUS_CODING CG13531 UPSTREAM RpL23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5570821	2L_5570821_SNP [dm3] 2L_5570821_SNP [dm6]	T	C	1.572e^-4	0.921	INTERGENIC
2L	7743361	2L_7743361_SNP [dm3] 2L_7743361_SNP [dm6]	C	T	1.596e^-4	0.921	DOWNSTREAM CG7214 INTERGENIC
3R	13418027	3R_13418027_SNP [dm3] 3R_17592305_SNP [dm6]	C	T	1.596e^-4	0.921	INTERGENIC
2L	5955060	2L_5955060_SNP [dm3] 2L_5955060_SNP [dm6]	A	G	1.607e^-4	0.921	UTR_3_PRIME CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
2L	7327894	2L_7327894_SNP [dm3] 2L_7327894_SNP [dm6]	C	T	1.625e^-4	0.921	INTERGENIC
2L	17542237	2L_17542237_SNP [dm3] 2L_17542237_SNP [dm6]	C	A	1.625e^-4	0.921	EXON CR43304
2R	12584261	2R_12584261_SNP [dm3] 2R_16696756_SNP [dm6]	C	T	1.630e^-4	0.921	INTRON CG30463
3R	9151822	3R_9151822_SNP [dm3] 3R_13326100_SNP [dm6]	T	C	1.647e^-4	0.921	INTERGENIC
3R	18357574	3R_18357574_SNP [dm3] 3R_22531852_SNP [dm6]	T	C	1.656e^-4	0.921	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
3R	9578273	3R_9578273_SNP [dm3] 3R_13752551_SNP [dm6]	G	A	1.666e^-4	0.921	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_sens
2L	8221828	2L_8221828_SNP [dm3] 2L_8221828_SNP [dm6]	A	G	1.688e^-4	0.921	SYNONYMOUS_CODING Pvr	TF binding site mE1_TFBS_HSA
3R	12514864	3R_12514864_SNP [dm3] 3R_16689142_SNP [dm6]	C	T	1.699e^-4	0.921	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12514865	3R_12514865_SNP [dm3] 3R_16689143_SNP [dm6]	C	T	1.699e^-4	0.921	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11191010	2L_11191010_SNP [dm3] 2L_11191010_SNP [dm6]	G	C	1.715e^-4	0.921	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1236696	2L_1236696_SNP [dm3] 2L_1236696_SNP [dm6]	C	G	1.715e^-4	0.921	INTERGENIC
2L	15431797	2L_15431797_SNP [dm3] 2L_15431797_SNP [dm6]	C	T	1.715e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7742647	2L_7742647_SNP [dm3] 2L_7742647_SNP [dm6]	A	G	1.715e^-4	0.921	INTERGENIC
2L	7742855	2L_7742855_SNP [dm3] 2L_7742855_SNP [dm6]	T	C	1.715e^-4	0.921	DOWNSTREAM CG7214 INTERGENIC
2R	13597454	2R_13597454_SNP [dm3] 2R_17709949_SNP [dm6]	A	T	1.715e^-4	0.921	UPSTREAM CG6424 INTRON CG6424
2R	17035200	2R_17035200_SNP [dm3] 2R_21147695_SNP [dm6]	C	T	1.715e^-4	0.921	UTR_3_PRIME CG15657 DOWNSTREAM CG30389 & 1 other	TF binding site mE1_TFBS_cad
2R	18394879	2R_18394879_SNP [dm3] 2R_22507374_SNP [dm6]	C	T	1.715e^-4	0.921	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4083072	3L_4083072_SNP [dm3] 3L_4083072_SNP [dm6]	A	C	1.715e^-4	0.921	INTRON Gad1
3R	16891835	3R_16891835_SNP [dm3] 3R_21066113_SNP [dm6]	C	T	1.715e^-4	0.921	INTRON AnxB9	TF binding site mE1_TFBS_Trl
3R	4127208	3R_4127208_SNP [dm3] 3R_8301486_SNP [dm6]	A	G	1.715e^-4	0.921	UTR_5_PRIME mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4127242	3R_4127242_SNP [dm3] 3R_8301520_SNP [dm6]	C	A	1.715e^-4	0.921	SYNONYMOUS_CODING mRpL1 UPSTREAM CG9626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	4156237	3R_4156237_SNP [dm3] 3R_8330515_SNP [dm6]	A	C	1.715e^-4	0.921	INTRON Poxm	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14302776	X_14302776_SNP [dm3] X_14408743_SNP [dm6]	C	T	1.715e^-4	0.921	INTRON dpr8
X	21339687	X_21339687_SNP [dm3] X_21468660_SNP [dm6]	T	C	1.722e^-4	0.921	UPSTREAM CR45508 INTERGENIC
2R	7070332	2R_7070332_SNP [dm3] 2R_11182827_SNP [dm6]	G	C	1.727e^-4	0.921	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8528246	2R_8528246_SNP [dm3] 2R_12640741_SNP [dm6]	G	T	1.732e^-4	0.921	UTR_3_PRIME CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad
2R	8528298	2R_8528298_SNP [dm3] 2R_12640793_SNP [dm6]	A	G	1.732e^-4	0.921	UTR_3_PRIME CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad
3L	2624790	3L_2624790_SNP [dm3] 3L_2624790_SNP [dm6]	T	C	1.732e^-4	0.921	INTRON Pxn
2L	18616483	2L_18616483_SNP [dm3] 2L_18616483_SNP [dm6]	T	C	1.741e^-4	0.921	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	14301449	X_14301449_SNP [dm3] X_14407416_SNP [dm6]	T	C	1.741e^-4	0.921	INTRON dpr8
3L	17105609	3L_17105609_SNP [dm3] 3L_17112509_SNP [dm6]	C	A	1.757e^-4	0.921	INTRON Rbp6
3R	10226018	3R_10226018_SNP [dm3] 3R_14400296_SNP [dm6]	T	C	1.757e^-4	0.921	INTRON cv-c	TF binding site mE1_TFBS_Trl
3R	17187292	3R_17187292_SNP [dm3] 3R_21361570_SNP [dm6]	T	C	1.757e^-4	0.921	SYNONYMOUS_CODING pre-mod_mdg4_-Z UTR_3_PRIME pre-mod_mdg4_-T DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
X	17955600	X_17955600_SNP [dm3] X_18061567_SNP [dm6]	G	A	1.764e^-4	0.921	INTRON Sh
2R	12460068	2R_12460068_SNP [dm3] 2R_16572563_SNP [dm6]	C	T	1.773e^-4	0.921	SYNONYMOUS_CODING CG4927
2L	12236589	2L_12236589_DEL [dm3] 2L_12236589_DEL [dm6]	AA	A	1.774e^-4	0.921	INTRON aret
2L	5954646	2L_5954646_SNP [dm3] 2L_5954646_SNP [dm6]	G	A	1.774e^-4	0.921	NON_SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
2R	17836790	2R_17836790_SNP [dm3] 2R_21949285_SNP [dm6]	A	C	1.782e^-4	0.921	INTERGENIC
2L	4427979	2L_4427979_SNP [dm3] 2L_4427979_SNP [dm6]	A	G	1.789e^-4	0.921	INTRON CG15431
2L	15120056	2L_15120056_SNP [dm3] 2L_15120056_SNP [dm6]	T	C	1.795e^-4	0.921	EXON CR43853
3R	9865874	3R_9865874_SNP [dm3] 3R_14040152_SNP [dm6]	A	G	1.799e^-4	0.921	INTERGENIC
2L	8945055	2L_8945055_SNP [dm3] 2L_8945055_SNP [dm6]	C	T	1.807e^-4	0.921	SYNONYMOUS_CODING C1GalTA	TF binding site mE1_TFBS_cad
3L	15448437	3L_15448437_DEL [dm3] 3L_15455337_DEL [dm6]	AA	A	1.809e^-4	0.921	INTERGENIC
X	22063758	X_22063758_SNP [dm3] X_22661922_SNP [dm6]	C	G	1.822e^-4	0.921	INTRON CR44997
2R	17063394	2R_17063394_SNP [dm3] 2R_21175889_SNP [dm6]	T	A	1.829e^-4	0.921	INTRON Pu
3R	16664199	3R_16664199_SNP [dm3] 3R_20838477_SNP [dm6]	T	C	1.848e^-4	0.921	INTRON Synd	TF binding site BDTNP1_TFBS_dl
2R	15799377	2R_15799377_SNP [dm3] 2R_19911872_SNP [dm6]	G	C	1.851e^-4	0.921	UPSTREAM CR44573 INTERGENIC
2R	6293595	2R_6293595_SNP [dm3] 2R_10406090_SNP [dm6]	G	A	1.853e^-4	0.921	DOWNSTREAM CG12898 INTRON CG42732
2R	9437518	2R_9437518_SNP [dm3] 2R_13550013_SNP [dm6]	C	T	1.857e^-4	0.921	SYNONYMOUS_CODING CG33156 INTRON CG33156	TF binding site mE1_TFBS_inv
2R	6725841	2R_6725841_SNP [dm3] 2R_10838336_SNP [dm6]	A	G	1.879e^-4	0.921	SYNONYMOUS_CODING CG7686 DOWNSTREAM CG30015	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5212349	X_5212349_SNP [dm3] X_5318316_SNP [dm6]	T	A	1.885e^-4	0.921	SYNONYMOUS_CODING Sas10 DOWNSTREAM Rnp4F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12902661	2L_12902661_SNP [dm3] 2L_12902661_SNP [dm6]	C	T	1.900e^-4	0.921	INTERGENIC
2R	18741395	2R_18741395_SNP [dm3] 2R_22853872_SNP [dm6]	T	G	1.900e^-4	0.921	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18741492	2R_18741492_SNP [dm3] 2R_22853969_SNP [dm6]	G	A	1.900e^-4	0.921	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	20529036	X_20529036_SNP [dm3] X_20658009_SNP [dm6]	G	T	1.906e^-4	0.921	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
X	8701105	X_8701105_SNP [dm3] X_8807072_SNP [dm6]	G	A	1.911e^-4	0.921	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4455536	2L_4455536_SNP [dm3] 2L_4455536_SNP [dm6]	G	C	1.912e^-4	0.921	SYNONYMOUS_CODING Gs1l DOWNSTREAM CG15434	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14282124	3L_14282124_SNP [dm3] 3L_14289024_SNP [dm6]	A	T	1.918e^-4	0.921	INTRON fz
3L	18192126	3L_18192126_SNP [dm3] 3L_18199026_SNP [dm6]	T	C	1.918e^-4	0.921	INTERGENIC
X	5869989	X_5869989_SNP [dm3] X_5975956_SNP [dm6]	T	A	1.921e^-4	0.921	INTRON Grip
3R	9578323	3R_9578323_SNP [dm3] 3R_13752601_SNP [dm6]	A	G	1.927e^-4	0.921	NON_SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19952250	2R_19952250_SNP [dm3] 2R_24064727_SNP [dm6]	T	C	1.932e^-4	0.921	SPLICE_SITE_REGION Rap2l INTRON Rap2l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3885666	2L_3885666_SNP [dm3] 2L_3885666_SNP [dm6]	C	G	1.933e^-4	0.921	INTRON capu	TF binding site mE1_TFBS_bab1
3R	5695330	3R_5695330_SNP [dm3] 3R_9869608_SNP [dm6]	A	C	1.935e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3817004	2L_3817004_SNP [dm3] 2L_3817004_SNP [dm6]	G	T	1.942e^-4	0.921	UPSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10693191	3L_10693191_SNP [dm3] 3L_10700091_SNP [dm6]	G	A	1.943e^-4	0.921	INTERGENIC
3L	10693194	3L_10693194_SNP [dm3] 3L_10700094_SNP [dm6]	A	G	1.943e^-4	0.921	INTERGENIC
3L	17103921	3L_17103921_SNP [dm3] 3L_17110821_SNP [dm6]	G	A	1.943e^-4	0.921	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19008460	3R_19008460_DEL [dm3] 3R_23182738_DEL [dm6]	CTTATCTAAACAGCAAATAG...	C	1.943e^-4	0.921	UPSTREAM Irk1 INTRON Irk1
3R	19008516	3R_19008516_SNP [dm3] 3R_23182794_SNP [dm6]	A	G	1.943e^-4	0.921	UPSTREAM Irk1 INTRON Irk1
2L	12348580	2L_12348580_SNP [dm3] 2L_12348580_SNP [dm6]	T	C	1.945e^-4	0.921	INTRON bru-2	TF binding site BDTNP1_TFBS_twi
2R	7070331	2R_7070331_SNP [dm3] 2R_11182826_SNP [dm6]	T	C	1.948e^-4	0.921	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12456810	2R_12456810_SNP [dm3] 2R_16569305_SNP [dm6]	A	G	1.964e^-4	0.921	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15246897	3R_15246897_SNP [dm3] 3R_19421175_SNP [dm6]	T	G	1.965e^-4	0.921	INTRON CG31221
2L	5618957	2L_5618957_SNP [dm3] 2L_5618957_SNP [dm6]	C	T	1.966e^-4	0.921	DOWNSTREAM CR44796 INTERGENIC
2R	4132244	2R_4132244_SNP [dm3] 2R_8244739_SNP [dm6]	A	G	1.973e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_z
2R	4603858	2R_4603858_SNP [dm3] 2R_8716353_SNP [dm6]	T	A	1.979e^-4	0.921	UPSTREAM PGRP-SC2 INTERGENIC
2L	17537129	2L_17537129_SNP [dm3] 2L_17537129_SNP [dm6]	T	A	1.987e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4428392	2L_4428392_SNP [dm3] 2L_4428392_SNP [dm6]	G	T	1.997e^-4	0.921	INTRON CG15431
2L	7742428	2L_7742428_SNP [dm3] 2L_7742428_SNP [dm6]	A	T	1.997e^-4	0.921	UPSTREAM Acp1 INTERGENIC
X	14626258	X_14626258_SNP [dm3] X_14732225_SNP [dm6]	T	C	1.997e^-4	0.921	INTRON NetB
3L	2425238	3L_2425238_SNP [dm3] 3L_2425238_SNP [dm6]	C	T	2.000e^-4	0.921	INTRON CG45186	TF binding site mE1_TFBS_bab1
2L	15109953	2L_15109953_SNP [dm3] 2L_15109953_SNP [dm6]	G	A	2.006e^-4	0.921	SYNONYMOUS_CODING CG15269	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17218008	3R_17218008_SNP [dm3] 3R_21392286_SNP [dm6]	C	A	2.007e^-4	0.921	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	20735114	2R_20735114_SNP [dm3] 2R_24847591_SNP [dm6]	A	G	2.015e^-4	0.921	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	15784898	2R_15784898_SNP [dm3] 2R_19897393_SNP [dm6]	G	A	2.016e^-4	0.921	DOWNSTREAM CR44572 INTERGENIC
X	7812586	X_7812586_SNP [dm3] X_7918553_SNP [dm6]	G	T	2.019e^-4	0.921	SYNONYMOUS_CODING hdm DOWNSTREAM snz
X	7814283	X_7814283_SNP [dm3] X_7920250_SNP [dm6]	C	G	2.019e^-4	0.921	UPSTREAM Ykt6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	2859594	3L_2859594_DEL [dm3] 3L_2859594_DEL [dm6]	GTTGCTG	G	2.019e^-4	0.921	INTRON CG43444
3L	6488134	3L_6488134_SNP [dm3] 3L_6495034_SNP [dm6]	G	A	2.027e^-4	0.921	UPSTREAM sfl INTRON CG10144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	6488162	3L_6488162_SNP [dm3] 3L_6495062_SNP [dm6]	T	C	2.027e^-4	0.921	UPSTREAM sfl INTRON CG10144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	16496869	2L_16496869_SNP [dm3] 2L_16496869_SNP [dm6]	C	A	2.034e^-4	0.921	UTR_5_PRIME Tpr2 INTRON Tpr2
2L	8752562	2L_8752562_SNP [dm3] 2L_8752562_SNP [dm6]	G	A	2.034e^-4	0.921	NON_SYNONYMOUS_CODING CG12438 UPSTREAM CG45307	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12262552	2L_12262552_SNP [dm3] 2L_12262552_SNP [dm6]	A	G	2.036e^-4	0.921	INTRON aret
2L	5954587	2L_5954587_SNP [dm3] 2L_5954587_SNP [dm6]	C	T	2.049e^-4	0.921	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
X	17618164	X_17618164_SNP [dm3] X_17724131_SNP [dm6]	G	T	2.054e^-4	0.921	INTRON CG42684
X	3154237	X_3154237_SNP [dm3] X_3260204_SNP [dm6]	T	A	2.078e^-4	0.921	INTRON dnc
2R	15328077	2R_15328077_SNP [dm3] 2R_19440572_SNP [dm6]	T	G	2.096e^-4	0.921	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	21339585	X_21339585_SNP [dm3] X_21468558_SNP [dm6]	T	G	2.103e^-4	0.921	UPSTREAM CR45507 & 1 other INTERGENIC
2L	17537565	2L_17537565_SNP [dm3] 2L_17537565_SNP [dm6]	A	G	2.105e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11009886	3R_11009886_SNP [dm3] 3R_15184164_SNP [dm6]	A	G	2.106e^-4	0.921	INTRON Gyc88E
2L	12301450	2L_12301450_SNP [dm3] 2L_12301450_SNP [dm6]	T	C	2.112e^-4	0.921	INTRON aret
3L	2617151	3L_2617151_SNP [dm3] 3L_2617151_SNP [dm6]	A	G	2.113e^-4	0.921	INTRON Pxn
2L	17533865	2L_17533865_SNP [dm3] 2L_17533865_SNP [dm6]	G	A	2.122e^-4	0.921	INTERGENIC
3R	16664043	3R_16664043_SNP [dm3] 3R_20838321_SNP [dm6]	A	C	2.125e^-4	0.921	SPLICE_SITE_REGION Synd INTRON Synd
3L	3141914	3L_3141914_SNP [dm3] 3L_3141914_SNP [dm6]	C	T	2.132e^-4	0.921	INTRON CG11537	TF binding site mE1_TFBS_HSA
2L	4427850	2L_4427850_SNP [dm3] 2L_4427850_SNP [dm6]	A	G	2.136e^-4	0.921	INTRON CG15431
3L	828673	3L_828673_SNP [dm3] 3L_828673_SNP [dm6]	A	G	2.139e^-4	0.921	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 UPSTREAM snoRNA:Me28S-G3113a EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11892569	2L_11892569_SNP [dm3] 2L_11892569_SNP [dm6]	T	A	2.147e^-4	0.921	INTRON Pde1c
2L	17541992	2L_17541992_SNP [dm3] 2L_17541992_SNP [dm6]	T	A	2.152e^-4	0.921	INTRON CR43304
2R	18608015	2R_18608015_SNP [dm3] 2R_22720510_SNP [dm6]	A	G	2.161e^-4	0.921	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2681937	3L_2681937_SNP [dm3] 3L_2681937_SNP [dm6]	C	A	2.167e^-4	0.921	INTRON Fife
3R	13661676	3R_13661676_SNP [dm3] 3R_17835954_SNP [dm6]	C	A	2.168e^-4	0.921	INTRON tinc
2L	17538553	2L_17538553_SNP [dm3] 2L_17538553_SNP [dm6]	A	G	2.173e^-4	0.921	INTERGENIC
2L	10753216	2L_10753216_SNP [dm3] 2L_10753216_SNP [dm6]	A	C	2.177e^-4	0.921	INTRON CG17124
2L	8221836	2L_8221836_SNP [dm3] 2L_8221836_SNP [dm6]	T	G	2.179e^-4	0.921	NON_SYNONYMOUS_CODING Pvr	TF binding site mE1_TFBS_HSA
3R	7303305	3R_7303305_SNP [dm3] 3R_11477583_SNP [dm6]	T	G	2.186e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6954908	2R_6954908_SNP [dm3] 2R_11067403_SNP [dm6]	T	C	2.187e^-4	0.921	INTRON luna	TF binding site mE1_TFBS_chinmo
3L	1847606	3L_1847606_SNP [dm3] 3L_1847606_SNP [dm6]	A	C	2.196e^-4	0.921	INTERGENIC
3R	17185696	3R_17185696_SNP [dm3] 3R_21359974_SNP [dm6]	C	A	2.197e^-4	0.921	UPSTREAM pre-mod_mdg4_-Z & 7 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17185700	3R_17185700_SNP [dm3] 3R_21359978_SNP [dm6]	G	A	2.197e^-4	0.921	UPSTREAM pre-mod_mdg4_-Z & 7 others INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9971521	2R_9971521_SNP [dm3] 2R_14084016_SNP [dm6]	T	C	2.200e^-4	0.921	INTRON Prosap
3L	7835535	3L_7835535_SNP [dm3] 3L_7842435_SNP [dm6]	G	A	2.209e^-4	0.921	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	26047388	3R_26047388_SNP [dm3] 3R_30221666_SNP [dm6]	A	C	2.215e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13059654	2R_13059654_SNP [dm3] 2R_17172149_SNP [dm6]	T	A	2.227e^-4	0.921	INTERGENIC
3R	15010610	3R_15010610_SNP [dm3] 3R_19184888_SNP [dm6]	A	C	2.228e^-4	0.921	INTRON CG31475
3R	15010611	3R_15010611_SNP [dm3] 3R_19184889_SNP [dm6]	T	A	2.228e^-4	0.921	INTRON CG31475
2L	8944866	2L_8944866_SNP [dm3] 2L_8944866_SNP [dm6]	A	C	2.243e^-4	0.921	SYNONYMOUS_CODING C1GalTA	TF binding site mE1_TFBS_cad
2R	10887366	2R_10887366_SNP [dm3] 2R_14999861_SNP [dm6]	A	G	2.256e^-4	0.921	INTERGENIC
3L	7835533	3L_7835533_SNP [dm3] 3L_7842433_SNP [dm6]	A	G	2.267e^-4	0.921	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	1185983	2L_1185983_SNP [dm3] 2L_1185983_SNP [dm6]	C	A	2.276e^-4	0.921	UTR_5_PRIME CG5001 UPSTREAM CG5001 DOWNSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8512468	2R_8512468_SNP [dm3] 2R_12624963_SNP [dm6]	A	C	2.279e^-4	0.921	UPSTREAM CG17760 INTRON CG30054
2R	8512475	2R_8512475_SNP [dm3] 2R_12624970_SNP [dm6]	T	C	2.279e^-4	0.921	UPSTREAM CG17760 INTRON CG30054
2R	10894121	2R_10894121_SNP [dm3] 2R_15006616_SNP [dm6]	C	A	2.284e^-4	0.921	INTERGENIC
2R	1515220	2R_1515220_SNP [dm3] 2R_5627715_SNP [dm6]	G	A	2.289e^-4	0.921	INTERGENIC
X	17504572	X_17504572_DEL [dm3] X_17610539_DEL [dm6]	CAATTGA	C	2.305e^-4	0.921	INTERGENIC
3L	11169962	3L_11169962_SNP [dm3] 3L_11176862_SNP [dm6]	A	C	2.313e^-4	0.921	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P
3L	15448539	3L_15448539_SNP [dm3] 3L_15455439_SNP [dm6]	A	T	2.320e^-4	0.921	INTERGENIC
3L	6610334	3L_6610334_SNP [dm3] 3L_6617234_SNP [dm6]	G	T	2.325e^-4	0.921	NON_SYNONYMOUS_CODING CG8398
2L	9594773	2L_9594773_SNP [dm3] 2L_9594773_SNP [dm6]	C	A	2.327e^-4	0.921	INTERGENIC	regulatory region REDfly_CRMs
2R	20206705	2R_20206705_SNP [dm3] 2R_24319182_SNP [dm6]	G	A	2.327e^-4	0.921	INTERGENIC
2R	16740167	2R_16740167_SNP [dm3] 2R_20852662_SNP [dm6]	C	T	2.330e^-4	0.921	UPSTREAM CG9993 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15108077	2L_15108077_SNP [dm3] 2L_15108077_SNP [dm6]	G	A	2.336e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14722937	2L_14722937_SNP [dm3] 2L_14722937_SNP [dm6]	G	C	2.337e^-4	0.921	INTERGENIC
3R	14822454	3R_14822454_SNP [dm3] 3R_18996732_SNP [dm6]	T	C	2.345e^-4	0.921	INTRON gukh	TF binding site mE1_TFBS_cad
2R	10547311	2R_10547311_SNP [dm3] 2R_14659806_SNP [dm6]	T	C	2.347e^-4	0.921	INTERGENIC
2R	18146860	2R_18146860_SNP [dm3] 2R_22259355_SNP [dm6]	C	A	2.347e^-4	0.921	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	18147951	2R_18147951_SNP [dm3] 2R_22260446_SNP [dm6]	A	G	2.347e^-4	0.921	INTRON dve
2R	18148296	2R_18148296_SNP [dm3] 2R_22260791_SNP [dm6]	A	G	2.347e^-4	0.921	INTRON dve
2R	18150986	2R_18150986_SNP [dm3] 2R_22263481_SNP [dm6]	T	A	2.347e^-4	0.921	INTRON dve
2R	18151006	2R_18151006_SNP [dm3] 2R_22263501_SNP [dm6]	G	C	2.347e^-4	0.921	INTRON dve
2R	9781053	2R_9781053_SNP [dm3] 2R_13893548_SNP [dm6]	A	G	2.347e^-4	0.921	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	828409	3L_828409_SNP [dm3] 3L_828409_SNP [dm6]	A	G	2.347e^-4	0.921	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 UPSTREAM snoRNA:Me28S-G3113b & 1 other EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	15010621	3R_15010621_INS [dm3] 3R_19184899_INS [dm6]	T	TATG	2.353e^-4	0.921	INTRON CG31475
2L	492331	2L_492331_SNP [dm3] 2L_492331_SNP [dm6]	A	T	2.353e^-4	0.921	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	493550	2L_493550_SNP [dm3] 2L_493550_SNP [dm6]	G	A	2.353e^-4	0.921	INTRON ush
2L	5954899	2L_5954899_SNP [dm3] 2L_5954899_SNP [dm6]	G	A	2.353e^-4	0.921	SYNONYMOUS_CODING CG9044 DOWNSTREAM CG13999	TF binding site mE1_TFBS_inv
X	17304679	X_17304679_DEL [dm3] X_17410646_DEL [dm6]	CC	C	2.353e^-4	0.921	INTERGENIC
3R	17186689	3R_17186689_INS [dm3] 3R_21360967_INS [dm6]	A	ATGAGATCGA	2.362e^-4	0.921	UTR_5_PRIME pre-mod_mdg4_-Z INTRON mod_mdg4_
X	8003210	X_8003210_SNP [dm3] X_8109177_SNP [dm6]	T	C	2.369e^-4	0.921	INTRON Gclc
3R	9591724	3R_9591724_SNP [dm3] 3R_13766002_SNP [dm6]	T	A	2.372e^-4	0.921	NON_SYNONYMOUS_CODING CG9312
2R	16710901	2R_16710901_SNP [dm3] 2R_20823396_SNP [dm6]	A	G	2.375e^-4	0.921	SYNONYMOUS_CODING insc	TF binding site mE1_TFBS_chinmo
3L	17477340	3L_17477340_SNP [dm3] 3L_17484240_SNP [dm6]	A	G	2.383e^-4	0.921	INTRON CG6333
3L	2664117	3L_2664117_SNP [dm3] 3L_2664117_SNP [dm6]	G	A	2.391e^-4	0.921	DOWNSTREAM CG33234 INTRON Fife
3R	12514840	3R_12514840_SNP [dm3] 3R_16689118_SNP [dm6]	C	T	2.396e^-4	0.921	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4719116	3R_4719116_SNP [dm3] 3R_8893394_SNP [dm6]	C	A	2.398e^-4	0.921	INTRON pyd
2R	15669877	2R_15669877_SNP [dm3] 2R_19782372_SNP [dm6]	A	G	2.405e^-4	0.921	INTERGENIC
2L	20241397	2L_20241397_SNP [dm3] 2L_20241397_SNP [dm6]	T	A	2.409e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17762722	X_17762722_SNP [dm3] X_17868689_SNP [dm6]	C	T	2.427e^-4	0.921	INTRON mnb
2L	9235567	2L_9235567_SNP [dm3] 2L_9235567_SNP [dm6]	A	G	2.438e^-4	0.921	DOWNSTREAM tRNA:CR31885 INTRON tai
2L	11359788	2L_11359788_SNP [dm3] 2L_11359788_SNP [dm6]	T	C	2.439e^-4	0.921	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4465889	2L_4465889_SNP [dm3] 2L_4465889_SNP [dm6]	T	C	2.469e^-4	0.921	SYNONYMOUS_CODING CG17840 DOWNSTREAM CG15436	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10169236	2L_10169236_SNP [dm3] 2L_10169236_SNP [dm6]	T	C	2.483e^-4	0.921	INTRON CG44153
2R	4361253	2R_4361253_SNP [dm3] 2R_8473748_SNP [dm6]	C	T	2.497e^-4	0.921	NON_SYNONYMOUS_CODING Mal-A8 DOWNSTREAM mtt
2L	17542217	2L_17542217_DEL [dm3] 2L_17542217_DEL [dm6]	CGCGCCATGTA...	C	2.511e^-4	0.921	EXON CR43304
3L	1287330	3L_1287330_SNP [dm3] 3L_1287330_SNP [dm6]	T	A	2.513e^-4	0.921	INTRON CG32333
2L	7908842	2L_7908842_SNP [dm3] 2L_7908842_SNP [dm6]	C	T	2.513e^-4	0.921	INTRON Snoo
2L	18875209	2L_18875209_SNP [dm3] 2L_18875209_SNP [dm6]	T	C	2.528e^-4	0.921	INTRON tup	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14448725	2R_14448725_SNP [dm3] 2R_18561220_SNP [dm6]	C	T	2.560e^-4	0.921	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22469788	3R_22469788_SNP [dm3] 3R_26644066_SNP [dm6]	C	A	2.563e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10898599	2R_10898599_SNP [dm3] 2R_15011094_SNP [dm6]	T	G	2.580e^-4	0.921	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2R	10898611	2R_10898611_SNP [dm3] 2R_15011106_SNP [dm6]	T	C	2.580e^-4	0.921	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3L	6465407	3L_6465407_SNP [dm3] 3L_6472307_SNP [dm6]	C	A	2.594e^-4	0.921	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	19228848	X_19228848_SNP [dm3] X_19334815_SNP [dm6]	A	C	2.601e^-4	0.921	INTRON nAChRalpha7
2L	14073030	2L_14073030_SNP [dm3] 2L_14073030_SNP [dm6]	A	T	2.606e^-4	0.921	INTRON nAChRalpha5
2L	14073200	2L_14073200_SNP [dm3] 2L_14073200_SNP [dm6]	G	A	2.606e^-4	0.921	INTRON nAChRalpha5
3L	1589087	3L_1589087_SNP [dm3] 3L_1589087_SNP [dm6]	T	A	2.619e^-4	0.921	INTRON CG13917
2L	16650412	2L_16650412_SNP [dm3] 2L_16650412_SNP [dm6]	A	T	2.619e^-4	0.921	INTRON CG42389
3L	4739624	3L_4739624_SNP [dm3] 3L_4739624_SNP [dm6]	G	C	2.628e^-4	0.921	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
3L	6701858	3L_6701858_SNP [dm3] 3L_6708758_SNP [dm6]	T	C	2.644e^-4	0.921	SYNONYMOUS_CODING CG8519
2L	19994355	2L_19994355_SNP [dm3] 2L_19994355_SNP [dm6]	C	T	2.646e^-4	0.921	INTRON CG43861	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4024478	2L_4024478_SNP [dm3] 2L_4024478_SNP [dm6]	A	G	2.647e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	15093730	2L_15093730_SNP [dm3] 2L_15093730_SNP [dm6]	A	G	2.652e^-4	0.921	INTRON CG15270
2L	769944	2L_769944_SNP [dm3] 2L_769944_SNP [dm6]	T	G	2.664e^-4	0.921	INTERGENIC
2L	17533855	2L_17533855_SNP [dm3] 2L_17533855_SNP [dm6]	A	G	2.671e^-4	0.921	INTERGENIC
2L	3268128	2L_3268128_SNP [dm3] 2L_3268128_SNP [dm6]	T	A	2.676e^-4	0.921	UPSTREAM CR44484 INTERGENIC
3L	3144411	3L_3144411_SNP [dm3] 3L_3144411_SNP [dm6]	A	G	2.684e^-4	0.921	SYNONYMOUS_CODING CG1291 UPSTREAM CG11537 DOWNSTREAM CG12082	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18152141	2R_18152141_SNP [dm3] 2R_22264636_SNP [dm6]	G	T	2.689e^-4	0.921	INTRON dve
2R	1468632	2R_1468632_SNP [dm3] 2R_5581127_SNP [dm6]	C	A	2.701e^-4	0.921	INTERGENIC
3L	13657454	3L_13657454_SNP [dm3] 3L_13664354_SNP [dm6]	C	G	2.710e^-4	0.921	INTRON bru-3
3R	4918043	3R_4918043_SNP [dm3] 3R_9092321_SNP [dm6]	A	C	2.712e^-4	0.921	INTRON pum
2R	20212047	2R_20212047_SNP [dm3] 2R_24324524_SNP [dm6]	T	C	2.721e^-4	0.921	UPSTREAM CR44810 INTERGENIC
2L	769842	2L_769842_SNP [dm3] 2L_769842_SNP [dm6]	T	C	2.728e^-4	0.921	INTERGENIC
3R	15242367	3R_15242367_SNP [dm3] 3R_19416645_SNP [dm6]	C	G	2.745e^-4	0.921	INTRON CG31221
3R	18016566	3R_18016566_SNP [dm3] 3R_22190844_SNP [dm6]	A	G	2.748e^-4	0.921	INTRON SKIP
2L	14074415	2L_14074415_SNP [dm3] 2L_14074415_SNP [dm6]	T	C	2.749e^-4	0.921	INTRON nAChRalpha5
3R	19008233	3R_19008233_SNP [dm3] 3R_23182511_SNP [dm6]	T	C	2.752e^-4	0.921	UPSTREAM Irk1 INTRON Irk1
2R	6508615	2R_6508615_SNP [dm3] 2R_10621110_SNP [dm6]	A	G	2.758e^-4	0.921	INTRON CG11883
3R	11140143	3R_11140143_SNP [dm3] 3R_15314421_SNP [dm6]	T	C	2.758e^-4	0.921	INTRON Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7209838	2L_7209838_SNP [dm3] 2L_7209838_SNP [dm6]	G	C	2.766e^-4	0.921	INTRON CG13784
2L	7209855	2L_7209855_SNP [dm3] 2L_7209855_SNP [dm6]	C	T	2.766e^-4	0.921	INTRON CG13784
2R	15669881	2R_15669881_SNP [dm3] 2R_19782376_SNP [dm6]	A	G	2.776e^-4	0.921	INTERGENIC
2L	10410531	2L_10410531_SNP [dm3] 2L_10410531_SNP [dm6]	A	T	2.776e^-4	0.921	DOWNSTREAM CG5355 & 2 others INTERGENIC
2L	2541915	2L_2541915_SNP [dm3] 2L_2541915_SNP [dm6]	G	A	2.779e^-4	0.921	INTERGENIC
2L	2541968	2L_2541968_SNP [dm3] 2L_2541968_SNP [dm6]	G	A	2.779e^-4	0.921	INTERGENIC
2L	6894312	2L_6894312_SNP [dm3] 2L_6894312_SNP [dm6]	T	A	2.779e^-4	0.921	INTRON Nlg2
2L	6894331	2L_6894331_SNP [dm3] 2L_6894331_SNP [dm6]	G	T	2.779e^-4	0.921	INTRON Nlg2
2L	6894332	2L_6894332_SNP [dm3] 2L_6894332_SNP [dm6]	G	T	2.779e^-4	0.921	INTRON Nlg2
2L	6894338	2L_6894338_SNP [dm3] 2L_6894338_SNP [dm6]	T	A	2.779e^-4	0.921	INTRON Nlg2
2L	6894360	2L_6894360_SNP [dm3] 2L_6894360_SNP [dm6]	G	A	2.779e^-4	0.921	INTRON Nlg2
2R	10547258	2R_10547258_DEL [dm3] 2R_14659753_DEL [dm6]	GCAACTTTGTG...	G	2.779e^-4	0.921	UPSTREAM Adgf-E INTERGENIC
2R	10547281	2R_10547281_SNP [dm3] 2R_14659776_SNP [dm6]	A	T	2.779e^-4	0.921	INTERGENIC
2R	18145563	2R_18145563_SNP [dm3] 2R_22258058_SNP [dm6]	C	T	2.779e^-4	0.921	INTRON dve	TF binding site mE1_TFBS_chinmo
2R	18145810	2R_18145810_SNP [dm3] 2R_22258305_SNP [dm6]	A	G	2.779e^-4	0.921	INTRON dve	TF binding site mE1_TFBS_chinmo
2R	3281409	2R_3281409_SNP [dm3] 2R_7393904_SNP [dm6]	T	A	2.779e^-4	0.921	SYNONYMOUS_CODING CG1707 UPSTREAM Gr43a
2R	3281599	2R_3281599_SNP [dm3] 2R_7394094_SNP [dm6]	A	T	2.779e^-4	0.921	UPSTREAM Gr43a & 1 other INTRON CG1707
3L	10740989	3L_10740989_SNP [dm3] 3L_10747889_SNP [dm6]	A	G	2.779e^-4	0.921	INTERGENIC
3L	4052407	3L_4052407_SNP [dm3] 3L_4052407_SNP [dm6]	T	C	2.779e^-4	0.921	INTRON CG1136	TF binding site BDTNP1_TFBS_twi
3L	4052408	3L_4052408_SNP [dm3] 3L_4052408_SNP [dm6]	A	C	2.779e^-4	0.921	INTRON CG1136	TF binding site BDTNP1_TFBS_twi
3L	4052412	3L_4052412_SNP [dm3] 3L_4052412_SNP [dm6]	A	C	2.779e^-4	0.921	INTRON CG1136	TF binding site BDTNP1_TFBS_twi
3L	4720672	3L_4720672_SNP [dm3] 3L_4720672_SNP [dm6]	A	T	2.779e^-4	0.921	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
3R	10513116	3R_10513116_SNP [dm3] 3R_14687394_SNP [dm6]	T	G	2.779e^-4	0.921	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14490975	3R_14490975_SNP [dm3] 3R_18665253_SNP [dm6]	G	A	2.779e^-4	0.921	UTR_3_PRIME Gos28 UPSTREAM CG31231	TF binding site mE1_TFBS_cad
X	17477947	X_17477947_SNP [dm3] X_17583914_SNP [dm6]	C	A	2.779e^-4	0.921	INTRON CG12991
X	8155558	X_8155558_SNP [dm3] X_8261525_SNP [dm6]	G	T	2.779e^-4	0.921	INTRON CG1632
2R	9345370	2R_9345370_SNP [dm3] 2R_13457865_SNP [dm6]	A	G	2.798e^-4	0.921	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6591138	2L_6591138_SNP [dm3] 2L_6591138_SNP [dm6]	A	C	2.803e^-4	0.921	INTRON CG11319	TF binding site mE1_TFBS_sbb
X	7824564	X_7824564_SNP [dm3] X_7930531_SNP [dm6]	G	A	2.806e^-4	0.921	INTRON CG10777	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2377907	3L_2377907_SNP [dm3] 3L_2377907_SNP [dm6]	T	A	2.809e^-4	0.921	UTR_5_PRIME CG45186 UPSTREAM CG15877 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6309444	3L_6309444_SNP [dm3] 3L_6316344_SNP [dm6]	T	C	2.811e^-4	0.921	INTERGENIC	regulatory region REDfly_CRMs
2R	15909190	2R_15909190_SNP [dm3] 2R_20021685_SNP [dm6]	A	C	2.812e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19686882	2L_19686882_SNP [dm3] 2L_19686882_SNP [dm6]	G	A	2.816e^-4	0.921	INTRON Lar
3L	14882124	3L_14882124_SNP [dm3] 3L_14889024_SNP [dm6]	T	C	2.817e^-4	0.921	INTERGENIC
2R	1657578	2R_1657578_SNP [dm3] 2R_5770073_SNP [dm6]	T	A	2.841e^-4	0.921	INTRON Gp210
2R	6140310	2R_6140310_SNP [dm3] 2R_10252805_SNP [dm6]	A	G	2.861e^-4	0.921	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
2L	12262574	2L_12262574_SNP [dm3] 2L_12262574_SNP [dm6]	G	A	2.871e^-4	0.921	INTRON aret	transposable element FlyBase
3L	5848389	3L_5848389_SNP [dm3] 3L_5855289_SNP [dm6]	A	G	2.875e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	15448442	3L_15448442_SNP [dm3] 3L_15455342_SNP [dm6]	G	A	2.884e^-4	0.921	INTERGENIC
3L	5848380	3L_5848380_SNP [dm3] 3L_5855280_SNP [dm6]	G	A	2.885e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	10899873	X_10899873_SNP [dm3] X_11005840_SNP [dm6]	A	T	2.889e^-4	0.921	INTRON CG42339
3L	3161754	3L_3161754_SNP [dm3] 3L_3161754_SNP [dm6]	A	G	2.897e^-4	0.921	UTR_3_PRIME pfk UPSTREAM rasp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18741663	2R_18741663_SNP [dm3] 2R_22854140_SNP [dm6]	C	T	2.910e^-4	0.921	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10143327	2R_10143327_SNP [dm3] 2R_14255822_SNP [dm6]	G	A	2.912e^-4	0.921	UPSTREAM CG8531 INTRON Hsc70-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14469884	3R_14469884_SNP [dm3] 3R_18644162_SNP [dm6]	T	C	2.914e^-4	0.921	INTRON qin
2L	9661301	2L_9661301_SNP [dm3] 2L_9661301_SNP [dm6]	T	C	2.926e^-4	0.921	INTERGENIC	insulator Insulator_Class_II.mE01
3L	11865261	3L_11865261_SNP [dm3] 3L_11872161_SNP [dm6]	C	A	2.931e^-4	0.921	UPSTREAM CG5906 INTRON CG44837
3L	14228494	3L_14228494_SNP [dm3] 3L_14235394_SNP [dm6]	T	C	2.933e^-4	0.921	SYNONYMOUS_CODING CG34244 DOWNSTREAM CG7924	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2663896	3L_2663896_SNP [dm3] 3L_2663896_SNP [dm6]	T	C	2.933e^-4	0.921	DOWNSTREAM CG33234 INTRON Fife
X	12237520	X_12237520_SNP [dm3] X_12343487_SNP [dm6]	C	T	2.958e^-4	0.921	INTERGENIC
2R	5318902	2R_5318902_INS [dm3] 2R_9431397_INS [dm6]	A	ATACA	2.962e^-4	0.921	INTRON Pdk
2R	15909211	2R_15909211_SNP [dm3] 2R_20021706_SNP [dm6]	G	A	2.980e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27081920	3R_27081920_SNP [dm3] 3R_31256198_SNP [dm6]	A	C	2.999e^-4	0.921	SYNONYMOUS_CODING spn-F	TF binding site mE1_TFBS_cad
3R	9870377	3R_9870377_SNP [dm3] 3R_14044655_SNP [dm6]	C	T	3.003e^-4	0.921	UPSTREAM tRNA:S2b:88A INTERGENIC
3R	14280247	3R_14280247_SNP [dm3] 3R_18454525_SNP [dm6]	G	A	3.013e^-4	0.921	INTRON fru
2R	10136696	2R_10136696_DEL [dm3] 2R_14249191_DEL [dm6]	CAAGGGATACCAC...	C	3.022e^-4	0.921	CODON_DELETION Mdr50	TF binding site mE1_TFBS_cad
3L	16874530	3L_16874530_SNP [dm3] 3L_16881430_SNP [dm6]	T	A	3.024e^-4	0.921	INTRON Lmpt
X	8003162	X_8003162_SNP [dm3] X_8109129_SNP [dm6]	C	T	3.024e^-4	0.921	INTRON Gclc
3R	24189722	3R_24189722_SNP [dm3] 3R_28364000_SNP [dm6]	T	C	3.042e^-4	0.921	INTERGENIC
2L	6720414	2L_6720414_SNP [dm3] 2L_6720414_SNP [dm6]	A	T	3.053e^-4	0.921	UTR_3_PRIME homer
2L	13401998	2L_13401998_SNP [dm3] 2L_13401998_SNP [dm6]	T	C	3.069e^-4	0.921	INTRON CG7110
2R	17932880	2R_17932880_SNP [dm3] 2R_22045375_SNP [dm6]	G	C	3.071e^-4	0.921	INTERGENIC
2R	18607949	2R_18607949_SNP [dm3] 2R_22720444_SNP [dm6]	A	G	3.079e^-4	0.921	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14069884	2L_14069884_SNP [dm3] 2L_14069884_SNP [dm6]	C	T	3.089e^-4	0.921	INTRON nAChRalpha5
2L	4464619	2L_4464619_SNP [dm3] 2L_4464619_SNP [dm6]	T	C	3.097e^-4	0.921	SYNONYMOUS_CODING CG15436 UPSTREAM CG17840	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2L	5541378	2L_5541378_SNP [dm3] 2L_5541378_SNP [dm6]	A	T	3.098e^-4	0.921	INTRON Hel25E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	17063263	2R_17063263_SNP [dm3] 2R_21175758_SNP [dm6]	G	A	3.109e^-4	0.921	INTRON Pu
3L	16204588	3L_16204588_SNP [dm3] 3L_16211488_SNP [dm6]	T	C	3.111e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15922188	2L_15922188_SNP [dm3] 2L_15922188_SNP [dm6]	A	G	3.112e^-4	0.921	INTRON beat-Ib
2L	15972916	2L_15972916_SNP [dm3] 2L_15972916_SNP [dm6]	A	T	3.112e^-4	0.921	INTERGENIC
2L	15972921	2L_15972921_SNP [dm3] 2L_15972921_SNP [dm6]	C	T	3.112e^-4	0.921	INTERGENIC
2L	15972943	2L_15972943_INS [dm3] 2L_15972943_INS [dm6]	A	ACACTA	3.112e^-4	0.921	INTERGENIC
2L	4461031	2L_4461031_SNP [dm3] 2L_4461031_SNP [dm6]	G	A	3.112e^-4	0.921	SYNONYMOUS_CODING CG15435 DOWNSTREAM CG15443	TF binding site mE1_TFBS_sens
3L	17011803	3L_17011803_SNP [dm3] 3L_17018703_SNP [dm6]	G	A	3.112e^-4	0.921	NON_SYNONYMOUS_CODING CG7728	TF binding site mE1_TFBS_cad
3L	17016785	3L_17016785_SNP [dm3] 3L_17023685_SNP [dm6]	C	A	3.112e^-4	0.921	NON_SYNONYMOUS_CODING a10 UPSTREAM CG6652 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17016786	3L_17016786_SNP [dm3] 3L_17023686_SNP [dm6]	G	A	3.112e^-4	0.921	SYNONYMOUS_CODING a10 UPSTREAM CG6652 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7774677	3L_7774677_SNP [dm3] 3L_7781577_SNP [dm6]	C	A	3.112e^-4	0.921	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7774698	3L_7774698_SNP [dm3] 3L_7781598_SNP [dm6]	G	A	3.112e^-4	0.921	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13987823	X_13987823_DEL [dm3] X_14093790_DEL [dm6]	CTCCGCCCAGCCGCCACC...	C	3.112e^-4	0.921	INTERGENIC
2R	17605582	2R_17605582_SNP [dm3] 2R_21718077_SNP [dm6]	G	A	3.129e^-4	0.921	SYNONYMOUS_CODING CG30398 UPSTREAM Tango11 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14641921	3L_14641921_SNP [dm3] 3L_14648821_SNP [dm6]	A	G	3.129e^-4	0.921	INTRON dlp	TF binding site mE1_TFBS_HSA
2R	12507621	2R_12507621_DEL [dm3] 2R_16620116_DEL [dm6]	GA	G	3.135e^-4	0.921	INTRON CG5065
2L	6173987	2L_6173987_SNP [dm3] 2L_6173987_SNP [dm6]	A	G	3.136e^-4	0.921	INTERGENIC
2L	5541319	2L_5541319_SNP [dm3] 2L_5541319_SNP [dm6]	G	T	3.138e^-4	0.921	SYNONYMOUS_CODING Hel25E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	5541362	2L_5541362_SNP [dm3] 2L_5541362_SNP [dm6]	T	C	3.138e^-4	0.921	INTRON Hel25E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	10209090	2L_10209090_SNP [dm3] 2L_10209090_SNP [dm6]	C	T	3.139e^-4	0.921	DOWNSTREAM CG5727 INTRON CG5731 EXON CR44845	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10209092	2L_10209092_SNP [dm3] 2L_10209092_SNP [dm6]	A	C	3.139e^-4	0.921	DOWNSTREAM CG5727 INTRON CG5731 EXON CR44845	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	13604554	2L_13604554_SNP [dm3] 2L_13604554_SNP [dm6]	C	A	3.157e^-4	0.921	INTRON kuz
3L	9087219	3L_9087219_SNP [dm3] 3L_9094119_SNP [dm6]	C	T	3.160e^-4	0.921	SYNONYMOUS_CODING CG32032
3L	7730733	3L_7730733_DEL [dm3] 3L_7737633_DEL [dm6]	CC	C	3.163e^-4	0.921	INTRON CG32373 & 1 other
2L	1692534	2L_1692534_SNP [dm3] 2L_1692534_SNP [dm6]	T	C	3.182e^-4	0.921	INTRON chinmo
3R	25365859	3R_25365859_SNP [dm3] 3R_29540137_SNP [dm6]	T	A	3.184e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3781602	X_3781602_SNP [dm3] X_3887569_SNP [dm6]	A	G	3.212e^-4	0.921	INTRON CG15239
3R	9760102	3R_9760102_SNP [dm3] 3R_13934380_SNP [dm6]	C	G	3.213e^-4	0.921	INTERGENIC
2L	17542233	2L_17542233_SNP [dm3] 2L_17542233_SNP [dm6]	T	G	3.232e^-4	0.921	EXON CR43304
2R	4241631	2R_4241631_SNP [dm3] 2R_8354126_SNP [dm6]	T	A	3.240e^-4	0.921	INTRON pdm3
2R	7214897	2R_7214897_SNP [dm3] 2R_11327392_SNP [dm6]	C	T	3.251e^-4	0.921	INTRON sha
2L	6267915	2L_6267915_SNP [dm3] 2L_6267915_SNP [dm6]	C	T	3.275e^-4	0.921	INTRON Ddr
2L	3458474	2L_3458474_SNP [dm3] 2L_3458474_SNP [dm6]	C	T	3.280e^-4	0.921	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12236603	2L_12236603_INS [dm3] 2L_12236603_INS [dm6]	G	GG	3.284e^-4	0.921	INTRON aret
3L	3146056	3L_3146056_SNP [dm3] 3L_3146056_SNP [dm6]	T	C	3.287e^-4	0.921	SYNONYMOUS_CODING CG12082 DOWNSTREAM CG1291	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14448722	2R_14448722_SNP [dm3] 2R_18561217_SNP [dm6]	A	G	3.297e^-4	0.921	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	10690994	2R_10690994_SNP [dm3] 2R_14803489_SNP [dm6]	G	A	3.299e^-4	0.921	INTRON kn	regulatory region REDfly_CRMs
2R	10691005	2R_10691005_SNP [dm3] 2R_14803500_SNP [dm6]	C	T	3.299e^-4	0.921	INTRON kn	regulatory region REDfly_CRMs
2L	492383	2L_492383_SNP [dm3] 2L_492383_SNP [dm6]	C	T	3.301e^-4	0.921	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1460951	2L_1460951_SNP [dm3] 2L_1460951_SNP [dm6]	T	A	3.301e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18148263	2R_18148263_DEL [dm3] 2R_22260758_DEL [dm6]	GGTG	G	3.313e^-4	0.921	INTRON dve
3L	14808696	3L_14808696_SNP [dm3] 3L_14815596_SNP [dm6]	T	C	3.320e^-4	0.921	INTRON CG17839
2R	12344700	2R_12344700_SNP [dm3] 2R_16457195_SNP [dm6]	A	G	3.322e^-4	0.921	INTERGENIC
3R	9542341	3R_9542341_SNP [dm3] 3R_13716619_SNP [dm6]	C	A	3.323e^-4	0.921	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2L	11359795	2L_11359795_SNP [dm3] 2L_11359795_SNP [dm6]	A	C	3.347e^-4	0.921	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11359799	2L_11359799_SNP [dm3] 2L_11359799_SNP [dm6]	T	A	3.347e^-4	0.921	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11359811	2L_11359811_SNP [dm3] 2L_11359811_SNP [dm6]	C	T	3.347e^-4	0.921	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11743807	2R_11743807_SNP [dm3] 2R_15856302_SNP [dm6]	C	T	3.354e^-4	0.921	DOWNSTREAM tun INTRON CG12970
3R	13965824	3R_13965824_SNP [dm3] 3R_18140102_SNP [dm6]	G	A	3.356e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	15448406	3L_15448406_SNP [dm3] 3L_15455306_SNP [dm6]	G	A	3.357e^-4	0.921	INTERGENIC
3L	15448415	3L_15448415_SNP [dm3] 3L_15455315_SNP [dm6]	G	A	3.357e^-4	0.921	INTERGENIC
X	7670097	X_7670097_SNP [dm3] X_7776064_SNP [dm6]	C	T	3.371e^-4	0.921	INTERGENIC
X	21270912	X_21270912_SNP [dm3] X_21399885_SNP [dm6]	A	C	3.379e^-4	0.921	DOWNSTREAM CR45500 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4448663	2L_4448663_SNP [dm3] 2L_4448663_SNP [dm6]	A	G	3.381e^-4	0.921	UPSTREAM MFS18 DOWNSTREAM CG15439 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2R	14273112	2R_14273112_SNP [dm3] 2R_18385607_SNP [dm6]	T	C	3.404e^-4	0.921	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC	TF binding site mE1_TFBS_cad
2L	19686941	2L_19686941_SNP [dm3] 2L_19686941_SNP [dm6]	G	A	3.412e^-4	0.921	INTRON Lar
X	7137931	X_7137931_SNP [dm3] X_7243898_SNP [dm6]	A	G	3.416e^-4	0.921	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
3L	17290114	3L_17290114_SNP [dm3] 3L_17297014_SNP [dm6]	T	C	3.418e^-4	0.921	INTERGENIC
3R	25372956	3R_25372956_DEL [dm3] 3R_29547234_DEL [dm6]	AAGCCA	A	3.424e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	16317119	2L_16317119_SNP [dm3] 2L_16317119_SNP [dm6]	T	C	3.436e^-4	0.921	INTRON cact
2L	17533618	2L_17533618_SNP [dm3] 2L_17533618_SNP [dm6]	C	A	3.460e^-4	0.921	INTERGENIC
2L	4444751	2L_4444751_SNP [dm3] 2L_4444751_SNP [dm6]	C	A	3.463e^-4	0.921	UTR_5_PRIME Elp3 UPSTREAM morgue	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6488877	3L_6488877_SNP [dm3] 3L_6495777_SNP [dm6]	C	A	3.469e^-4	0.921	UTR_5_PRIME sfl UPSTREAM CG10144	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	3910623	3L_3910623_SNP [dm3] 3L_3910623_SNP [dm6]	T	A	3.472e^-4	0.921	UTR_3_PRIME Eip63F-1 UPSTREAM mge
2L	14176771	2L_14176771_SNP [dm3] 2L_14176771_SNP [dm6]	C	A	3.475e^-4	0.921	INTRON CG43333
3R	6255319	3R_6255319_SNP [dm3] 3R_10429597_SNP [dm6]	T	C	3.480e^-4	0.921	INTERGENIC
3R	6255323	3R_6255323_SNP [dm3] 3R_10429601_SNP [dm6]	C	A	3.480e^-4	0.921	INTERGENIC
3R	6255330	3R_6255330_SNP [dm3] 3R_10429608_SNP [dm6]	T	C	3.480e^-4	0.921	INTERGENIC
2L	2642842	2L_2642842_SNP [dm3] 2L_2642842_SNP [dm6]	G	T	3.489e^-4	0.921	INTERGENIC
2L	12450775	2L_12450775_SNP [dm3] 2L_12450775_SNP [dm6]	T	G	3.519e^-4	0.921	NON_SYNONYMOUS_CODING Oatp33Eb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5587225	3L_5587225_SNP [dm3] 3L_5594125_SNP [dm6]	A	G	3.519e^-4	0.921	SYNONYMOUS_CODING CG10592	TF binding site mE1_TFBS_cad
3L	5587231	3L_5587231_SNP [dm3] 3L_5594131_SNP [dm6]	G	A	3.519e^-4	0.921	SYNONYMOUS_CODING CG10592	TF binding site mE1_TFBS_cad
2L	12515570	2L_12515570_SNP [dm3] 2L_12515570_SNP [dm6]	A	G	3.520e^-4	0.921	INTRON bun
3R	19032073	3R_19032073_SNP [dm3] 3R_23206351_SNP [dm6]	G	A	3.527e^-4	0.921	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	15425346	X_15425346_SNP [dm3] X_15531313_SNP [dm6]	C	G	3.527e^-4	0.921	INTRON Ac13E	TF binding site BDTNP1_TFBS_twi
3L	16904671	3L_16904671_SNP [dm3] 3L_16911571_SNP [dm6]	T	C	3.547e^-4	0.921	SYNONYMOUS_CODING Lmpt UTR_5_PRIME Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
3L	15605230	3L_15605230_SNP [dm3] 3L_15612130_SNP [dm6]	G	T	3.548e^-4	0.921	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449
3L	15605236	3L_15605236_SNP [dm3] 3L_15612136_SNP [dm6]	C	T	3.548e^-4	0.921	SYNONYMOUS_CODING CG13449 UPSTREAM CG13449
2L	11871563	2L_11871563_SNP [dm3] 2L_11871563_SNP [dm6]	G	T	3.552e^-4	0.921	INTRON Pde1c
X	17528966	X_17528966_SNP [dm3] X_17634933_SNP [dm6]	A	G	3.552e^-4	0.921	SYNONYMOUS_CODING CG8289	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	21135372	2L_21135372_SNP [dm3] 2L_21135372_SNP [dm6]	T	G	3.563e^-4	0.921	UTR_3_PRIME Dap160 INTRON Dap160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17935720	2R_17935720_SNP [dm3] 2R_22048215_SNP [dm6]	T	G	3.566e^-4	0.921	INTERGENIC
3L	951541	3L_951541_SNP [dm3] 3L_951541_SNP [dm6]	C	A	3.567e^-4	0.921	INTRON Glut1
3R	17559641	3R_17559641_SNP [dm3] 3R_21733919_SNP [dm6]	C	T	3.568e^-4	0.921	INTERGENIC
3R	17559683	3R_17559683_SNP [dm3] 3R_21733961_SNP [dm6]	A	T	3.568e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA
X	15553742	X_15553742_SNP [dm3] X_15659709_SNP [dm6]	A	T	3.571e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3751314	2L_3751314_INS [dm3] 2L_3751314_INS [dm6]	C	CTTATC	3.572e^-4	0.921	INTRON CG10019
2L	8309098	2L_8309098_SNP [dm3] 2L_8309098_SNP [dm6]	T	A	3.574e^-4	0.921	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	14088975	2L_14088975_SNP [dm3] 2L_14088975_SNP [dm6]	A	G	3.584e^-4	0.921	INTRON nAChRalpha5
2L	12388589	2L_12388589_SNP [dm3] 2L_12388589_SNP [dm6]	C	A	3.596e^-4	0.921	INTRON bru-2
2R	17075457	2R_17075457_SNP [dm3] 2R_21187952_SNP [dm6]	T	C	3.616e^-4	0.921	INTRON tud	TF binding site mE1_TFBS_sens
X	7845296	X_7845296_SNP [dm3] X_7951263_SNP [dm6]	G	A	3.621e^-4	0.921	SYNONYMOUS_CODING CG42593	TF binding site mE1_TFBS_chinmo
3L	13082467	3L_13082467_SNP [dm3] 3L_13089367_SNP [dm6]	C	T	3.622e^-4	0.921	SYNONYMOUS_CODING CG11251 DOWNSTREAM CR45749	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8222248	2L_8222248_SNP [dm3] 2L_8222248_SNP [dm6]	G	A	3.624e^-4	0.921	SYNONYMOUS_CODING Pvr
X	14297692	X_14297692_SNP [dm3] X_14403659_SNP [dm6]	A	G	3.629e^-4	0.921	INTRON dpr8
X	14297723	X_14297723_SNP [dm3] X_14403690_SNP [dm6]	C	T	3.629e^-4	0.921	INTRON dpr8
2R	12355702	2R_12355702_SNP [dm3] 2R_16468197_SNP [dm6]	T	C	3.632e^-4	0.921	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
3L	10894920	3L_10894920_SNP [dm3] 3L_10901820_SNP [dm6]	T	G	3.634e^-4	0.921	INTERGENIC
3L	10894932	3L_10894932_SNP [dm3] 3L_10901832_SNP [dm6]	T	G	3.634e^-4	0.921	INTERGENIC
3R	22144237	3R_22144237_SNP [dm3] 3R_26318515_SNP [dm6]	T	A	3.638e^-4	0.921	UTR_5_PRIME CG33970
2R	10826023	2R_10826023_SNP [dm3] 2R_14938518_SNP [dm6]	C	G	3.643e^-4	0.921	NON_SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_sens
2R	10826111	2R_10826111_SNP [dm3] 2R_14938606_SNP [dm6]	G	A	3.643e^-4	0.921	SYNONYMOUS_CODING Lap1
2R	4553865	2R_4553865_SNP [dm3] 2R_8666360_SNP [dm6]	C	T	3.647e^-4	0.921	INTRON Acsl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10690944	2R_10690944_SNP [dm3] 2R_14803439_SNP [dm6]	T	C	3.674e^-4	0.921	INTRON kn	regulatory region REDfly_CRMs
X	10021455	X_10021455_SNP [dm3] X_10127422_SNP [dm6]	T	A	3.677e^-4	0.921	INTRON CR44894 & 1 other
3R	5482021	3R_5482021_SNP [dm3] 3R_9656299_SNP [dm6]	A	C	3.678e^-4	0.921	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17891896	2L_17891896_SNP [dm3] 2L_17891896_SNP [dm6]	T	G	3.680e^-4	0.921	INTERGENIC
3L	3148786	3L_3148786_SNP [dm3] 3L_3148786_SNP [dm6]	A	G	3.681e^-4	0.921	UPSTREAM BtbVII & 1 other INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20188889	2R_20188889_SNP [dm3] 2R_24301366_SNP [dm6]	T	G	3.683e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14723026	2L_14723026_SNP [dm3] 2L_14723026_SNP [dm6]	C	A	3.688e^-4	0.921	INTERGENIC
2R	13746741	2R_13746741_SNP [dm3] 2R_17859236_SNP [dm6]	C	T	3.715e^-4	0.921	INTRON olf186-F
3R	16858730	3R_16858730_SNP [dm3] 3R_21033008_SNP [dm6]	C	T	3.716e^-4	0.921	SYNONYMOUS_CODING Dhc93AB
3R	16858805	3R_16858805_SNP [dm3] 3R_21033083_SNP [dm6]	A	T	3.716e^-4	0.921	INTRON Dhc93AB
3L	14259540	3L_14259540_SNP [dm3] 3L_14266440_SNP [dm6]	G	A	3.720e^-4	0.921	INTERGENIC
2L	7328762	2L_7328762_SNP [dm3] 2L_7328762_SNP [dm6]	A	G	3.723e^-4	0.921	DOWNSTREAM CR45304 INTERGENIC
3L	2461801	3L_2461801_DEL [dm3] 3L_2461801_DEL [dm6]	TGT	T	3.736e^-4	0.921	INTRON CG45186
X	20550557	X_20550557_SNP [dm3] X_20679530_SNP [dm6]	A	T	3.740e^-4	0.921	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	9405070	2L_9405070_INS [dm3] 2L_9405070_INS [dm6]	A	ACATACA	3.753e^-4	0.921	INTRON Shawl
2L	17533066	2L_17533066_SNP [dm3] 2L_17533066_SNP [dm6]	G	C	3.755e^-4	0.921	UPSTREAM CG15145 INTERGENIC
X	5554036	X_5554036_SNP [dm3] X_5660003_SNP [dm6]	A	T	3.769e^-4	0.921	INTRON CG42265
2R	18815646	2R_18815646_SNP [dm3] 2R_22928123_SNP [dm6]	T	A	3.772e^-4	0.921	UTR_3_PRIME CG42678 UPSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_cad
3L	17594064	3L_17594064_SNP [dm3] 3L_17600964_SNP [dm6]	T	A	3.778e^-4	0.921	INTRON Eip74EF
2L	3818643	2L_3818643_SNP [dm3] 2L_3818643_SNP [dm6]	C	A	3.779e^-4	0.921	DOWNSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	12967460	3L_12967460_SNP [dm3] 3L_12974360_SNP [dm6]	G	T	3.789e^-4	0.921	DOWNSTREAM CG10749 INTERGENIC
3L	12598375	3L_12598375_SNP [dm3] 3L_12605275_SNP [dm6]	T	C	3.789e^-4	0.921	INTERGENIC
3L	2672134	3L_2672134_SNP [dm3] 3L_2672134_SNP [dm6]	C	T	3.796e^-4	0.921	UTR_3_PRIME Fife INTRON Fife
X	7814288	X_7814288_SNP [dm3] X_7920255_SNP [dm6]	A	C	3.796e^-4	0.921	UPSTREAM Ykt6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	7821300	X_7821300_SNP [dm3] X_7927267_SNP [dm6]	C	A	3.796e^-4	0.921	SYNONYMOUS_CODING CG10777	TF binding site mE1_TFBS_chinmo
X	7820251	X_7820251_SNP [dm3] X_7926218_SNP [dm6]	A	G	3.799e^-4	0.921	UTR_3_PRIME CG10777	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	13241800	3L_13241800_SNP [dm3] 3L_13248700_SNP [dm6]	C	T	3.814e^-4	0.921	UTR_5_PRIME CG32119 UPSTREAM tRNA:D2:69F INTRON caps
2L	20139696	2L_20139696_SNP [dm3] 2L_20139696_SNP [dm6]	T	A	3.833e^-4	0.921	INTERGENIC
2L	1364629	2L_1364629_SNP [dm3] 2L_1364629_SNP [dm6]	A	G	3.833e^-4	0.921	INTERGENIC
X	20529187	X_20529187_SNP [dm3] X_20658160_SNP [dm6]	T	C	3.836e^-4	0.921	UTR_5_PRIME Cyp6v1 UPSTREAM CR45466
3L	8758863	3L_8758863_SNP [dm3] 3L_8765763_SNP [dm6]	C	T	3.839e^-4	0.921	UPSTREAM Fhos INTRON Fhos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	11612763	3R_11612763_SNP [dm3] 3R_15787041_SNP [dm6]	C	G	3.839e^-4	0.921	NON_SYNONYMOUS_CODING CG9590	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6954898	2R_6954898_SNP [dm3] 2R_11067393_SNP [dm6]	T	C	3.865e^-4	0.921	INTRON luna	TF binding site mE1_TFBS_chinmo
X	15531595	X_15531595_SNP [dm3] X_15637562_SNP [dm6]	C	T	3.877e^-4	0.921	DOWNSTREAM CR44423 INTERGENIC
2R	17349447	2R_17349447_SNP [dm3] 2R_21461942_SNP [dm6]	T	C	3.884e^-4	0.921	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2L	17533643	2L_17533643_SNP [dm3] 2L_17533643_SNP [dm6]	A	C	3.888e^-4	0.921	INTERGENIC
2R	11983717	2R_11983717_DEL [dm3] 2R_16096212_DEL [dm6]	GCCACAAAGAGAACT...	G	3.889e^-4	0.921	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12356737	2R_12356737_SNP [dm3] 2R_16469232_SNP [dm6]	A	T	3.889e^-4	0.921	DOWNSTREAM CheB53b INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16737662	2R_16737662_SNP [dm3] 2R_20850157_SNP [dm6]	C	T	3.889e^-4	0.921	UTR_3_PRIME CG9993 UPSTREAM CG17999	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16775946	2R_16775946_SNP [dm3] 2R_20888441_SNP [dm6]	C	T	3.889e^-4	0.921	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	18606064	2R_18606064_SNP [dm3] 2R_22718559_SNP [dm6]	C	T	3.889e^-4	0.921	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18686600	3R_18686600_SNP [dm3] 3R_22860878_SNP [dm6]	T	C	3.889e^-4	0.921	INTERGENIC
X	16506117	X_16506117_SNP [dm3] X_16612084_SNP [dm6]	C	G	3.889e^-4	0.921	NON_SYNONYMOUS_CODING mbt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	5554102	X_5554102_SNP [dm3] X_5660069_SNP [dm6]	T	C	3.889e^-4	0.921	INTRON CG42265
X	5554119	X_5554119_SNP [dm3] X_5660086_SNP [dm6]	A	T	3.889e^-4	0.921	INTRON CG42265
X	8142194	X_8142194_SNP [dm3] X_8248161_SNP [dm6]	C	G	3.889e^-4	0.921	DOWNSTREAM ND75 & 1 other INTERGENIC
3L	7406006	3L_7406006_SNP [dm3] 3L_7412906_SNP [dm6]	T	G	3.895e^-4	0.921	INTERGENIC
2L	3987723	2L_3987723_SNP [dm3] 2L_3987723_SNP [dm6]	T	G	3.909e^-4	0.921	INTRON fred
3L	7728670	3L_7728670_SNP [dm3] 3L_7735570_SNP [dm6]	A	G	3.910e^-4	0.921	INTRON CG32373 & 1 other
3L	9087325	3L_9087325_SNP [dm3] 3L_9094225_SNP [dm6]	T	C	3.910e^-4	0.921	INTRON CG32032
3L	6589919	3L_6589919_SNP [dm3] 3L_6596819_SNP [dm6]	C	T	3.913e^-4	0.921	INTRON ndl
2L	17533469	2L_17533469_DEL [dm3] 2L_17533469_DEL [dm6]	TGTAATGGAAGTCCAC...	T	3.959e^-4	0.921	INTERGENIC
2L	17533488	2L_17533488_SNP [dm3] 2L_17533488_SNP [dm6]	A	C	3.959e^-4	0.921	INTERGENIC
X	10021422	X_10021422_SNP [dm3] X_10127389_SNP [dm6]	G	A	3.964e^-4	0.921	INTRON CR44894 & 1 other
2L	15331072	2L_15331072_SNP [dm3] 2L_15331072_SNP [dm6]	T	A	3.975e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16704437	3R_16704437_SNP [dm3] 3R_20878715_SNP [dm6]	T	A	4.003e^-4	0.921	DOWNSTREAM TotZ EXON CR44048
2L	12159502	2L_12159502_SNP [dm3] 2L_12159502_SNP [dm6]	T	C	4.011e^-4	0.921	INTRON CG31760	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9577843	3R_9577843_SNP [dm3] 3R_13752121_SNP [dm6]	T	A	4.015e^-4	0.921	INTRON CG34383
3R	18357577	3R_18357577_SNP [dm3] 3R_22531855_SNP [dm6]	A	G	4.031e^-4	0.921	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
2L	21061321	2L_21061321_SNP [dm3] 2L_21061321_SNP [dm6]	T	G	4.031e^-4	0.921	INTRON CG9265
3L	8197120	3L_8197120_SNP [dm3] 3L_8204020_SNP [dm6]	T	C	4.039e^-4	0.921	DOWNSTREAM CG13679 INTERGENIC
3L	15996556	3L_15996556_SNP [dm3] 3L_16003456_SNP [dm6]	A	G	4.044e^-4	0.921	INTRON CG5830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	9695561	2L_9695561_SNP [dm3] 2L_9695561_SNP [dm6]	C	T	4.045e^-4	0.921	INTRON Pka-C1
3L	17493387	3L_17493387_SNP [dm3] 3L_17500287_SNP [dm6]	C	A	4.047e^-4	0.921	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17493391	3L_17493391_SNP [dm3] 3L_17500291_SNP [dm6]	A	T	4.047e^-4	0.921	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9760109	3R_9760109_SNP [dm3] 3R_13934387_SNP [dm6]	C	T	4.073e^-4	0.921	INTERGENIC
X	14300480	X_14300480_SNP [dm3] X_14406447_SNP [dm6]	C	T	4.083e^-4	0.921	INTRON dpr8
2R	8628894	2R_8628894_SNP [dm3] 2R_12741389_SNP [dm6]	T	C	4.084e^-4	0.921	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6169842	2R_6169842_SNP [dm3] 2R_10282337_SNP [dm6]	A	T	4.084e^-4	0.921	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10809270	X_10809270_SNP [dm3] X_10915237_SNP [dm6]	G	A	4.104e^-4	0.921	INTRON CG43901
3L	5956640	3L_5956640_SNP [dm3] 3L_5963540_SNP [dm6]	G	A	4.105e^-4	0.921	INTERGENIC
2L	15116468	2L_15116468_SNP [dm3] 2L_15116468_SNP [dm6]	A	G	4.105e^-4	0.921	SYNONYMOUS_CODING stc	TF binding site mE1_TFBS_chinmo
2R	12344737	2R_12344737_SNP [dm3] 2R_16457232_SNP [dm6]	A	C	4.111e^-4	0.921	INTERGENIC
2R	12346195	2R_12346195_SNP [dm3] 2R_16458690_SNP [dm6]	G	T	4.111e^-4	0.921	INTERGENIC
2R	12346847	2R_12346847_SNP [dm3] 2R_16459342_SNP [dm6]	G	T	4.111e^-4	0.921	INTERGENIC
X	9950707	X_9950707_SNP [dm3] X_10056674_SNP [dm6]	A	G	4.111e^-4	0.921	UTR_3_PRIME CG15312 DOWNSTREAM CG15312
2R	10268523	2R_10268523_SNP [dm3] 2R_14381018_SNP [dm6]	T	C	4.121e^-4	0.921	INTRON Dh44-R1
3R	15441633	3R_15441633_SNP [dm3] 3R_19615911_SNP [dm6]	T	G	4.121e^-4	0.921	DOWNSTREAM CG6231 & 1 other INTERGENIC
3L	5956601	3L_5956601_SNP [dm3] 3L_5963501_SNP [dm6]	C	A	4.141e^-4	0.921	INTERGENIC
3L	13165040	3L_13165040_SNP [dm3] 3L_13171940_SNP [dm6]	C	T	4.154e^-4	0.921	INTERGENIC
3L	18654677	3L_18654677_SNP [dm3] 3L_18661577_SNP [dm6]	C	T	4.154e^-4	0.921	UTR_5_PRIME MYPT-75D
2R	21059083	2R_21059083_SNP [dm3] 2R_25171560_SNP [dm6]	C	A	4.165e^-4	0.921	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_Kr
3L	3549294	3L_3549294_SNP [dm3] 3L_3549294_SNP [dm6]	C	A	4.168e^-4	0.921	INTRON Eip63E
2L	6505029	2L_6505029_SNP [dm3] 2L_6505029_SNP [dm6]	G	T	4.171e^-4	0.921	INTRON CG31637
2R	5126465	2R_5126465_SNP [dm3] 2R_9238960_SNP [dm6]	G	A	4.204e^-4	0.921	SYNONYMOUS_CODING Cyp4p2 INTRON hig
2R	10691008	2R_10691008_SNP [dm3] 2R_14803503_SNP [dm6]	A	G	4.207e^-4	0.921	INTRON kn	regulatory region REDfly_CRMs
2R	10691016	2R_10691016_SNP [dm3] 2R_14803511_SNP [dm6]	T	C	4.207e^-4	0.921	INTRON kn	regulatory region REDfly_CRMs
2R	9724460	2R_9724460_SNP [dm3] 2R_13836955_SNP [dm6]	G	A	4.207e^-4	0.921	INTRON CG6347
2R	3263958	2R_3263958_SNP [dm3] 2R_7376453_SNP [dm6]	A	T	4.214e^-4	0.921	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	769872	2L_769872_SNP [dm3] 2L_769872_SNP [dm6]	T	A	4.221e^-4	0.921	INTERGENIC
2L	769876	2L_769876_SNP [dm3] 2L_769876_SNP [dm6]	T	C	4.221e^-4	0.921	INTERGENIC
2L	4429832	2L_4429832_SNP [dm3] 2L_4429832_SNP [dm6]	C	A	4.225e^-4	0.921	INTRON CG15431
2L	14722985	2L_14722985_SNP [dm3] 2L_14722985_SNP [dm6]	C	T	4.225e^-4	0.921	INTERGENIC
2L	14723070	2L_14723070_SNP [dm3] 2L_14723070_SNP [dm6]	T	G	4.225e^-4	0.921	INTERGENIC
2R	6167224	2R_6167224_SNP [dm3] 2R_10279719_SNP [dm6]	G	A	4.228e^-4	0.921	NON_SYNONYMOUS_CODING CAP INTRON CAP
2R	6167235	2R_6167235_SNP [dm3] 2R_10279730_SNP [dm6]	G	A	4.228e^-4	0.921	SYNONYMOUS_CODING CAP INTRON CAP
X	14302503	X_14302503_SNP [dm3] X_14408470_SNP [dm6]	G	A	4.228e^-4	0.921	INTRON dpr8
X	5843836	X_5843836_SNP [dm3] X_5949803_SNP [dm6]	A	G	4.235e^-4	0.921	SYNONYMOUS_CODING CG6041 UPSTREAM CG32755
3R	9867295	3R_9867295_SNP [dm3] 3R_14041573_SNP [dm6]	T	C	4.245e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3271697	2L_3271697_SNP [dm3] 2L_3271697_SNP [dm6]	A	T	4.254e^-4	0.921	UTR_3_PRIME CG3347
X	8697822	X_8697822_SNP [dm3] X_8803789_SNP [dm6]	T	C	4.269e^-4	0.921	INTRON Lim1
3L	9196166	3L_9196166_SNP [dm3] 3L_9203066_SNP [dm6]	A	G	4.279e^-4	0.921	UTR_3_PRIME Slc45-1
2R	8512465	2R_8512465_SNP [dm3] 2R_12624960_SNP [dm6]	A	G	4.280e^-4	0.921	UPSTREAM CG17760 INTRON CG30054
2L	3766042	2L_3766042_SNP [dm3] 2L_3766042_SNP [dm6]	C	T	4.281e^-4	0.921	SPLICE_SITE_REGION CG43707 SYNONYMOUS_CODING CG43707 UPSTREAM CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
X	17618693	X_17618693_SNP [dm3] X_17724660_SNP [dm6]	T	A	4.285e^-4	0.921	INTRON CG42684
X	6804654	X_6804654_SNP [dm3] X_6910621_SNP [dm6]	C	T	4.290e^-4	0.921	INTRON CG14431
2R	16741922	2R_16741922_SNP [dm3] 2R_20854417_SNP [dm6]	G	A	4.290e^-4	0.921	INTERGENIC
3L	17290118	3L_17290118_SNP [dm3] 3L_17297018_SNP [dm6]	A	T	4.328e^-4	0.921	INTERGENIC
2L	3200405	2L_3200405_SNP [dm3] 2L_3200405_SNP [dm6]	T	A	4.340e^-4	0.921	UPSTREAM CG34393 INTRON CG34393
X	3154205	X_3154205_INS [dm3] X_3260172_INS [dm6]	G	GAC	4.348e^-4	0.921	INTRON dnc
2R	17150041	2R_17150041_SNP [dm3] 2R_21262536_SNP [dm6]	G	T	4.350e^-4	0.921	INTRON Rgk3
2R	10898676	2R_10898676_SNP [dm3] 2R_15011171_SNP [dm6]	A	T	4.368e^-4	0.921	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
3L	3170786	3L_3170786_SNP [dm3] 3L_3170786_SNP [dm6]	A	T	4.378e^-4	0.921	NON_SYNONYMOUS_CODING CG32281 DOWNSTREAM CG14963 INTRON CG32278	TF binding site mE1_TFBS_sens
2L	12262578	2L_12262578_SNP [dm3] 2L_12262578_SNP [dm6]	A	T	4.387e^-4	0.921	INTRON aret	transposable element FlyBase
3L	3033470	3L_3033470_SNP [dm3] 3L_3033470_SNP [dm6]	C	T	4.391e^-4	0.921	INTERGENIC
2L	16800580	2L_16800580_SNP [dm3] 2L_16800580_SNP [dm6]	T	A	4.399e^-4	0.921	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
2R	9455395	2R_9455395_SNP [dm3] 2R_13567890_SNP [dm6]	T	A	4.402e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
X	6450167	X_6450167_SNP [dm3] X_6556134_SNP [dm6]	A	C	4.407e^-4	0.921	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	2665852	3L_2665852_SNP [dm3] 3L_2665852_SNP [dm6]	G	A	4.409e^-4	0.921	INTRON Fife	TF binding site mE1_TFBS_chinmo
3R	6975544	3R_6975544_SNP [dm3] 3R_11149822_SNP [dm6]	T	A	4.421e^-4	0.921	INTERGENIC
X	8968494	X_8968494_SNP [dm3] X_9074461_SNP [dm6]	C	A	4.424e^-4	0.921	INTRON CG44325
2L	15317187	2L_15317187_SNP [dm3] 2L_15317187_SNP [dm6]	C	A	4.433e^-4	0.921	DOWNSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	8231111	2L_8231111_DEL [dm3] 2L_8231111_DEL [dm6]	ATAATA	A	4.436e^-4	0.921	UPSTREAM Pvr INTRON Pvr
3L	16762100	3L_16762100_SNP [dm3] 3L_16769000_SNP [dm6]	T	A	4.438e^-4	0.921	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	15331229	2L_15331229_SNP [dm3] 2L_15331229_SNP [dm6]	C	T	4.440e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8309062	2L_8309062_SNP [dm3] 2L_8309062_SNP [dm6]	A	T	4.442e^-4	0.921	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8309068	2L_8309068_SNP [dm3] 2L_8309068_SNP [dm6]	C	T	4.442e^-4	0.921	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11696268	2L_11696268_SNP [dm3] 2L_11696268_SNP [dm6]	G	A	4.469e^-4	0.921	DOWNSTREAM CG4988 INTERGENIC
2L	17896498	2L_17896498_SNP [dm3] 2L_17896498_SNP [dm6]	A	T	4.469e^-4	0.921	INTERGENIC
3L	2665014	3L_2665014_SNP [dm3] 3L_2665014_SNP [dm6]	C	T	4.480e^-4	0.921	UTR_3_PRIME Fife INTRON Fife
3L	14264933	3L_14264933_SNP [dm3] 3L_14271833_SNP [dm6]	A	G	4.486e^-4	0.921	INTERGENIC
X	20530224	X_20530224_SNP [dm3] X_20659197_SNP [dm6]	A	G	4.531e^-4	0.921	INTRON Cyp6v1
X	7138307	X_7138307_SNP [dm3] X_7244274_SNP [dm6]	T	C	4.533e^-4	0.921	INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17676469	3L_17676469_SNP [dm3] 3L_17683369_SNP [dm6]	A	G	4.548e^-4	0.921	UTR_3_PRIME CG34251 DOWNSTREAM CG34251
2L	6750650	2L_6750650_SNP [dm3] 2L_6750650_SNP [dm6]	A	G	4.557e^-4	0.921	INTRON CG11221
2R	12507260	2R_12507260_SNP [dm3] 2R_16619755_SNP [dm6]	A	T	4.609e^-4	0.921	INTRON CG5065
2R	2598272	2R_2598272_SNP [dm3] 2R_6710767_SNP [dm6]	G	A	4.614e^-4	0.921	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	8003194	X_8003194_SNP [dm3] X_8109161_SNP [dm6]	A	T	4.621e^-4	0.921	INTRON Gclc
X	8003195	X_8003195_SNP [dm3] X_8109162_SNP [dm6]	C	G	4.621e^-4	0.921	INTRON Gclc
X	8003200	X_8003200_SNP [dm3] X_8109167_SNP [dm6]	A	T	4.621e^-4	0.921	INTRON Gclc
X	8003213	X_8003213_SNP [dm3] X_8109180_SNP [dm6]	G	T	4.621e^-4	0.921	INTRON Gclc
X	8003218	X_8003218_SNP [dm3] X_8109185_SNP [dm6]	C	T	4.621e^-4	0.921	INTRON Gclc
X	8003219	X_8003219_SNP [dm3] X_8109186_SNP [dm6]	C	G	4.621e^-4	0.921	INTRON Gclc
2R	19897539	2R_19897539_SNP [dm3] 2R_24010016_SNP [dm6]	C	G	4.651e^-4	0.921	SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12448383	2L_12448383_DEL [dm3] 2L_12448383_DEL [dm6]	GAAAAAAG	G	4.652e^-4	0.921	UPSTREAM Oatp33Eb & 1 other INTERGENIC
2R	9437526	2R_9437526_SNP [dm3] 2R_13550021_SNP [dm6]	T	C	4.655e^-4	0.921	NON_SYNONYMOUS_CODING CG33156 INTRON CG33156	TF binding site mE1_TFBS_inv
2L	7207281	2L_7207281_SNP [dm3] 2L_7207281_SNP [dm6]	T	C	4.664e^-4	0.921	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784
3L	17938214	3L_17938214_SNP [dm3] 3L_17945114_SNP [dm6]	G	A	4.682e^-4	0.921	INTRON CG43174
3L	2665800	3L_2665800_SNP [dm3] 3L_2665800_SNP [dm6]	C	T	4.694e^-4	0.921	INTRON Fife
3R	18016418	3R_18016418_SNP [dm3] 3R_22190696_SNP [dm6]	A	T	4.696e^-4	0.921	INTRON SKIP
2R	17940608	2R_17940608_SNP [dm3] 2R_22053103_SNP [dm6]	C	A	4.727e^-4	0.921	INTERGENIC
3L	3599727	3L_3599727_SNP [dm3] 3L_3599727_SNP [dm6]	C	A	4.727e^-4	0.921	INTRON Eip63E
2R	10443211	2R_10443211_SNP [dm3] 2R_14555706_SNP [dm6]	G	A	4.745e^-4	0.921	INTRON ttv
2R	10886371	2R_10886371_SNP [dm3] 2R_14998866_SNP [dm6]	T	C	4.749e^-4	0.921	INTERGENIC
2R	6140466	2R_6140466_SNP [dm3] 2R_10252961_SNP [dm6]	G	A	4.754e^-4	0.921	UTR_5_PRIME CG12913 UPSTREAM Syb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
X	20318452	X_20318452_SNP [dm3] X_20447425_SNP [dm6]	A	G	4.765e^-4	0.921	DOWNSTREAM CG42578 INTERGENIC
2R	17935689	2R_17935689_SNP [dm3] 2R_22048184_SNP [dm6]	G	A	4.778e^-4	0.921	INTERGENIC
2L	9487091	2L_9487091_SNP [dm3] 2L_9487091_SNP [dm6]	G	T	4.788e^-4	0.921	INTERGENIC
2L	770291	2L_770291_SNP [dm3] 2L_770291_SNP [dm6]	T	A	4.795e^-4	0.921	INTERGENIC
2L	20944073	2L_20944073_SNP [dm3] 2L_20944073_SNP [dm6]	G	T	4.798e^-4	0.921	INTERGENIC
X	7136695	X_7136695_SNP [dm3] X_7242662_SNP [dm6]	T	A	4.799e^-4	0.921	DOWNSTREAM CG9650 INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
X	7136740	X_7136740_SNP [dm3] X_7242707_SNP [dm6]	A	C	4.799e^-4	0.921	DOWNSTREAM CG9650 INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
X	7136874	X_7136874_SNP [dm3] X_7242841_SNP [dm6]	C	T	4.799e^-4	0.921	DOWNSTREAM CG9650 INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	7136951	X_7136951_SNP [dm3] X_7242918_SNP [dm6]	A	C	4.799e^-4	0.921	DOWNSTREAM CG9650 INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	7137770	X_7137770_SNP [dm3] X_7243737_SNP [dm6]	A	G	4.799e^-4	0.921	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
X	7137773	X_7137773_DEL [dm3] X_7243740_DEL [dm6]	TAGTGACCACATAGC...	T	4.799e^-4	0.921	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
X	7137791	X_7137791_SNP [dm3] X_7243758_SNP [dm6]	G	T	4.799e^-4	0.921	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
X	7137794	X_7137794_DEL [dm3] X_7243761_DEL [dm6]	GTT	G	4.799e^-4	0.921	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
X	7137800	X_7137800_SNP [dm3] X_7243767_SNP [dm6]	T	G	4.799e^-4	0.921	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
X	7137884	X_7137884_SNP [dm3] X_7243851_SNP [dm6]	A	G	4.799e^-4	0.921	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
2R	17525473	2R_17525473_SNP [dm3] 2R_21637968_SNP [dm6]	T	C	4.804e^-4	0.921	SYNONYMOUS_CODING CG10321 UTR_3_PRIME CG10321	TF binding site mE1_TFBS_cad
2L	3803461	2L_3803461_SNP [dm3] 2L_3803461_SNP [dm6]	G	T	4.808e^-4	0.921	UPSTREAM Reph DOWNSTREAM CG3921 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	12646164	2L_12646164_SNP [dm3] 2L_12646164_SNP [dm6]	A	G	4.811e^-4	0.921	UTR_5_PRIME Ref2
2L	12646213	2L_12646213_SNP [dm3] 2L_12646213_SNP [dm6]	T	A	4.811e^-4	0.921	START_GAINED Ref2 UTR_5_PRIME Ref2
2L	2642715	2L_2642715_SNP [dm3] 2L_2642715_SNP [dm6]	A	G	4.856e^-4	0.921	INTERGENIC
3L	7836288	3L_7836288_INS [dm3] 3L_7843188_INS [dm6]	A	AGTGTTTTA	4.869e^-4	0.921	INTRON Pdp1	regulatory region REDfly_CRMs
2L	18868015	2L_18868015_SNP [dm3] 2L_18868015_SNP [dm6]	A	G	4.872e^-4	0.921	UPSTREAM mir-4946 INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13229943	3L_13229943_SNP [dm3] 3L_13236843_SNP [dm6]	G	T	4.887e^-4	0.921	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7065826	3L_7065826_SNP [dm3] 3L_7072726_SNP [dm6]	A	C	4.890e^-4	0.921	DOWNSTREAM CG34030 INTRON CG8641	TF binding site mE1_TFBS_inv
3L	19911174	3L_19911174_SNP [dm3] 3L_19918074_SNP [dm6]	A	G	4.890e^-4	0.921	UTR_3_PRIME Rpn1 DOWNSTREAM Su_z_12
3L	7835117	3L_7835117_SNP [dm3] 3L_7842017_SNP [dm6]	A	G	4.902e^-4	0.921	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	9796970	2R_9796970_SNP [dm3] 2R_13909465_SNP [dm6]	A	C	4.917e^-4	0.921	INTRON shot
2L	769871	2L_769871_SNP [dm3] 2L_769871_SNP [dm6]	T	G	4.921e^-4	0.921	INTERGENIC
2R	17656394	2R_17656394_SNP [dm3] 2R_21768889_SNP [dm6]	C	A	4.923e^-4	0.921	SPLICE_SITE_REGION CG30395 INTRON CG30395
3L	2473344	3L_2473344_SNP [dm3] 3L_2473344_SNP [dm6]	A	G	4.926e^-4	0.921	INTRON CG45186
2R	13505254	2R_13505254_SNP [dm3] 2R_17617749_SNP [dm6]	G	C	4.948e^-4	0.921	UTR_5_PRIME CG44403 DOWNSTREAM snoRNA:Or-aca4 INTRON CG10936
X	11068865	X_11068865_SNP [dm3] X_11174832_SNP [dm6]	C	A	4.951e^-4	0.921	INTERGENIC
X	11068890	X_11068890_SNP [dm3] X_11174857_SNP [dm6]	A	G	4.951e^-4	0.921	INTERGENIC
X	11068903	X_11068903_SNP [dm3] X_11174870_SNP [dm6]	G	C	4.951e^-4	0.921	INTERGENIC
2L	11359790	2L_11359790_SNP [dm3] 2L_11359790_SNP [dm6]	A	T	4.962e^-4	0.921	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11359804	2L_11359804_SNP [dm3] 2L_11359804_SNP [dm6]	T	A	4.962e^-4	0.921	INTRON salr	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14300560	X_14300560_SNP [dm3] X_14406527_SNP [dm6]	T	C	4.963e^-4	0.921	INTRON dpr8
2L	12575862	2L_12575862_SNP [dm3] 2L_12575862_SNP [dm6]	T	C	4.965e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	4455027	2L_4455027_SNP [dm3] 2L_4455027_SNP [dm6]	T	A	4.972e^-4	0.921	UPSTREAM CG15440 DOWNSTREAM Gs1l INTRON CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5047345	3R_5047345_DEL [dm3] 3R_9221623_DEL [dm6]	AA	A	4.973e^-4	0.921	INTRON pum	TF binding site BDTNP1_TFBS_dl
2L	10724710	2L_10724710_INS [dm3] 2L_10724710_INS [dm6]	T	TAAAT	4.978e^-4	0.921	UPSTREAM CG6431 INTRON CG6431
2R	7376619	2R_7376619_SNP [dm3] 2R_11489114_SNP [dm6]	C	T	4.986e^-4	0.921	INTRON inv
3L	22914706	3L_22914706_SNP [dm3] 3L_22921606_SNP [dm6]	T	A	4.987e^-4	0.921	INTRON CG12768	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5872779	2L_5872779_SNP [dm3] 2L_5872779_SNP [dm6]	T	C	4.992e^-4	0.921	INTRON rau	TF binding site mE1_TFBS_sens
3L	3171040	3L_3171040_SNP [dm3] 3L_3171040_SNP [dm6]	C	T	4.997e^-4	0.921	SYNONYMOUS_CODING CG32278 DOWNSTREAM CG14963 & 1 other	TF binding site mE1_TFBS_sens
2L	12262453	2L_12262453_SNP [dm3] 2L_12262453_SNP [dm6]	T	C	5.007e^-4	0.921	INTRON aret
3L	17493328	3L_17493328_SNP [dm3] 3L_17500228_SNP [dm6]	C	A	5.010e^-4	0.921	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9760120	3R_9760120_SNP [dm3] 3R_13934398_SNP [dm6]	A	C	5.015e^-4	0.921	INTERGENIC
2L	1273749	2L_1273749_SNP [dm3] 2L_1273749_SNP [dm6]	C	T	5.028e^-4	0.921	SYNONYMOUS_CODING robo3
2R	17656391	2R_17656391_SNP [dm3] 2R_21768886_SNP [dm6]	G	C	5.042e^-4	0.921	SPLICE_SITE_REGION CG30395 INTRON CG30395
3R	9725921	3R_9725921_SNP [dm3] 3R_13900199_SNP [dm6]	C	G	5.044e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1287073	3L_1287073_SNP [dm3] 3L_1287073_SNP [dm6]	G	A	5.046e^-4	0.921	INTRON CG32333
2R	10342231	2R_10342231_SNP [dm3] 2R_14454726_SNP [dm6]	C	T	5.051e^-4	0.921	INTRON Oaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	19257306	X_19257306_SNP [dm3] X_19363273_SNP [dm6]	G	A	5.053e^-4	0.921	INTRON kek5	TF binding site BDTNP1_TFBS_dl
X	9734213	X_9734213_SNP [dm3] X_9840180_SNP [dm6]	C	T	5.066e^-4	0.921	INTRON CG32698
3L	9087659	3L_9087659_SNP [dm3] 3L_9094559_SNP [dm6]	A	G	5.085e^-4	0.921	INTRON CG32032
2R	10886986	2R_10886986_SNP [dm3] 2R_14999481_SNP [dm6]	G	C	5.096e^-4	0.921	INTERGENIC
2L	10995524	2L_10995524_SNP [dm3] 2L_10995524_SNP [dm6]	G	T	5.104e^-4	0.921	UTR_3_PRIME CG16833 DOWNSTREAM CG16833 INTRON CG16833
X	22055765	X_22055765_SNP [dm3] X_22653929_SNP [dm6]	C	T	5.131e^-4	0.921	INTERGENIC	transposable element FlyBase
2L	4455051	2L_4455051_SNP [dm3] 2L_4455051_SNP [dm6]	C	T	5.135e^-4	0.921	UPSTREAM CG15440 DOWNSTREAM Gs1l INTRON CG15434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1522488	2R_1522488_DEL [dm3] 2R_5634983_DEL [dm6]	TAAAAGA	T	5.142e^-4	0.921	INTERGENIC	transposable element FlyBase
X	20530232	X_20530232_SNP [dm3] X_20659205_SNP [dm6]	A	G	5.154e^-4	0.921	INTRON Cyp6v1
2L	3687437	2L_3687437_SNP [dm3] 2L_3687437_SNP [dm6]	C	T	5.156e^-4	0.921	INTRON CG34340	TF binding site mE1_TFBS_Kr
2R	16739791	2R_16739791_SNP [dm3] 2R_20852286_SNP [dm6]	C	T	5.162e^-4	0.921	UPSTREAM CG9993 INTERGENIC
2R	10887387	2R_10887387_SNP [dm3] 2R_14999882_SNP [dm6]	C	T	5.175e^-4	0.921	INTERGENIC
2L	10725276	2L_10725276_SNP [dm3] 2L_10725276_SNP [dm6]	C	G	5.176e^-4	0.921	UPSTREAM CG6431 INTRON CG6431
2L	10725290	2L_10725290_SNP [dm3] 2L_10725290_SNP [dm6]	A	C	5.176e^-4	0.921	UPSTREAM CG6431 INTRON CG6431
2L	10725334	2L_10725334_SNP [dm3] 2L_10725334_SNP [dm6]	G	A	5.176e^-4	0.921	UPSTREAM CG6431 INTRON CG6431
2R	11983901	2R_11983901_SNP [dm3] 2R_16096396_SNP [dm6]	C	A	5.176e^-4	0.921	INTRON Dg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13201556	3L_13201556_SNP [dm3] 3L_13208456_SNP [dm6]	T	A	5.176e^-4	0.921	DOWNSTREAM CR45096 INTERGENIC
2L	1058160	2L_1058160_SNP [dm3] 2L_1058160_SNP [dm6]	G	T	5.178e^-4	0.921	INTRON S	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	1064431	2L_1064431_SNP [dm3] 2L_1064431_SNP [dm6]	G	C	5.178e^-4	0.921	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25114806	3R_25114806_SNP [dm3] 3R_29289084_SNP [dm6]	T	C	5.181e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12581190	2R_12581190_SNP [dm3] 2R_16693685_SNP [dm6]	A	T	5.208e^-4	0.921	UTR_3_PRIME CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
3L	14259530	3L_14259530_SNP [dm3] 3L_14266430_SNP [dm6]	A	G	5.214e^-4	0.921	INTERGENIC
3L	8135561	3L_8135561_SNP [dm3] 3L_8142461_SNP [dm6]	C	G	5.223e^-4	0.921	UTR_3_PRIME CG13676 DOWNSTREAM mus301
2L	15910515	2L_15910515_SNP [dm3] 2L_15910515_SNP [dm6]	T	C	5.225e^-4	0.921	INTRON beat-Ib
2L	8759291	2L_8759291_DEL [dm3] 2L_8759291_DEL [dm6]	ATATAGTTA	A	5.234e^-4	0.921	INTERGENIC
2L	3053324	2L_3053324_SNP [dm3] 2L_3053324_SNP [dm6]	C	A	5.237e^-4	0.921	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	3915962	2L_3915962_SNP [dm3] 2L_3915962_SNP [dm6]	G	C	5.247e^-4	0.921	INTRON fred
2L	3915964	2L_3915964_SNP [dm3] 2L_3915964_SNP [dm6]	A	G	5.247e^-4	0.921	INTRON fred
3L	2665580	3L_2665580_SNP [dm3] 3L_2665580_SNP [dm6]	T	G	5.248e^-4	0.921	INTRON Fife
3L	2667160	3L_2667160_SNP [dm3] 3L_2667160_SNP [dm6]	T	A	5.248e^-4	0.921	INTRON Fife
3L	8438881	3L_8438881_SNP [dm3] 3L_8445781_SNP [dm6]	G	T	5.248e^-4	0.921	INTRON CG6983	TF binding site BDTNP1_TFBS_twi
3R	9422621	3R_9422621_SNP [dm3] 3R_13596899_SNP [dm6]	C	A	5.248e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10171350	2L_10171350_SNP [dm3] 2L_10171350_SNP [dm6]	T	A	5.254e^-4	0.921	INTRON CG44153
2R	13873992	2R_13873992_SNP [dm3] 2R_17986487_SNP [dm6]	G	C	5.263e^-4	0.921	INTRON dpr13
3R	13908475	3R_13908475_SNP [dm3] 3R_18082753_SNP [dm6]	T	C	5.266e^-4	0.921	DOWNSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	15441556	3R_15441556_DEL [dm3] 3R_19615834_DEL [dm6]	AACA	A	5.271e^-4	0.921	DOWNSTREAM CG6231 & 1 other INTERGENIC
2R	18688893	2R_18688893_SNP [dm3] 2R_22801388_SNP [dm6]	T	G	5.277e^-4	0.921	INTRON blw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	7136782	X_7136782_SNP [dm3] X_7242749_SNP [dm6]	C	A	5.278e^-4	0.921	DOWNSTREAM CG9650 INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	15553737	X_15553737_SNP [dm3] X_15659704_SNP [dm6]	T	G	5.291e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	15553738	X_15553738_SNP [dm3] X_15659705_SNP [dm6]	G	C	5.291e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	15553743	X_15553743_SNP [dm3] X_15659710_SNP [dm6]	A	G	5.291e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	12387828	2L_12387828_SNP [dm3] 2L_12387828_SNP [dm6]	C	T	5.300e^-4	0.921	INTRON bru-2
3R	9474017	3R_9474017_SNP [dm3] 3R_13648295_SNP [dm6]	T	G	5.304e^-4	0.921	UPSTREAM rin INTRON rin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	14725471	2L_14725471_SNP [dm3] 2L_14725471_SNP [dm6]	A	G	5.307e^-4	0.921	SYNONYMOUS_CODING CG42685	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17685402	3L_17685402_SNP [dm3] 3L_17692302_SNP [dm6]	A	T	5.308e^-4	0.921	INTRON Ccn
2L	3687544	2L_3687544_SNP [dm3] 2L_3687544_SNP [dm6]	T	G	5.309e^-4	0.921	INTRON CG34340	TF binding site mE1_TFBS_Kr
X	7517484	X_7517484_SNP [dm3] X_7623451_SNP [dm6]	G	A	5.311e^-4	0.921	INTRON ct	TF binding site mE1_TFBS_HSA
X	20209530	X_20209530_SNP [dm3] X_20338503_SNP [dm6]	A	G	5.344e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17156317	2R_17156317_SNP [dm3] 2R_21268812_SNP [dm6]	A	G	5.359e^-4	0.921	INTRON Rgk3
2L	4679490	2L_4679490_SNP [dm3] 2L_4679490_SNP [dm6]	A	C	5.363e^-4	0.921	INTERGENIC
2L	3109569	2L_3109569_SNP [dm3] 2L_3109569_SNP [dm6]	C	A	5.375e^-4	0.921	UPSTREAM PpD6 INTRON toc
2R	9977354	2R_9977354_SNP [dm3] 2R_14089849_SNP [dm6]	T	A	5.387e^-4	0.921	UPSTREAM CG42287 INTRON Prosap
2R	9977388	2R_9977388_SNP [dm3] 2R_14089883_SNP [dm6]	T	G	5.387e^-4	0.921	UPSTREAM CG42287 INTRON Prosap
2L	3687442	2L_3687442_SNP [dm3] 2L_3687442_SNP [dm6]	C	T	5.399e^-4	0.921	INTRON CG34340	TF binding site mE1_TFBS_Kr
2L	2541806	2L_2541806_DEL [dm3] 2L_2541806_DEL [dm6]	TG	T	5.402e^-4	0.921	INTERGENIC
3L	2460286	3L_2460286_SNP [dm3] 3L_2460286_SNP [dm6]	A	G	5.431e^-4	0.921	UPSTREAM CG45186 INTRON CG45186
3L	14642089	3L_14642089_SNP [dm3] 3L_14648989_SNP [dm6]	A	T	5.435e^-4	0.921	INTRON dlp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	8130741	X_8130741_SNP [dm3] X_8236708_SNP [dm6]	A	G	5.439e^-4	0.921	SYNONYMOUS_CODING sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14069033	2L_14069033_SNP [dm3] 2L_14069033_SNP [dm6]	C	T	5.439e^-4	0.921	INTRON nAChRalpha5
2R	10898756	2R_10898756_SNP [dm3] 2R_15011251_SNP [dm6]	A	G	5.459e^-4	0.921	UPSTREAM hbs INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2R	10826085	2R_10826085_SNP [dm3] 2R_14938580_SNP [dm6]	G	A	5.480e^-4	0.921	NON_SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_sens
2R	10826086	2R_10826086_SNP [dm3] 2R_14938581_SNP [dm6]	A	C	5.480e^-4	0.921	NON_SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_sens
2R	10156150	2R_10156150_SNP [dm3] 2R_14268645_SNP [dm6]	T	G	5.480e^-4	0.921	UPSTREAM CG8547 DOWNSTREAM SelD INTERGENIC
2L	21917165	2L_21917165_SNP [dm3] 2L_21917165_SNP [dm6]	A	C	5.483e^-4	0.921	NON_SYNONYMOUS_CODING CG11634	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17656818	2R_17656818_SNP [dm3] 2R_21769313_SNP [dm6]	T	C	5.488e^-4	0.921	NON_SYNONYMOUS_CODING CG30395 SPLICE_SITE_REGION CG30395 INTRON CG30395	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23613877	3R_23613877_SNP [dm3] 3R_27788155_SNP [dm6]	G	A	5.495e^-4	0.921	INTRON CG34353
2R	6242201	2R_6242201_SNP [dm3] 2R_10354696_SNP [dm6]	A	G	5.498e^-4	0.921	DOWNSTREAM CG12902 & 2 others INTRON CG42732
3L	828901	3L_828901_SNP [dm3] 3L_828901_SNP [dm6]	A	G	5.498e^-4	0.921	SYNONYMOUS_CODING CG13900 UTR_3_PRIME CG13900 EXON CR45184	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3109575	2L_3109575_SNP [dm3] 2L_3109575_SNP [dm6]	G	T	5.502e^-4	0.921	UPSTREAM PpD6 INTRON toc
2R	11982049	2R_11982049_SNP [dm3] 2R_16094544_SNP [dm6]	G	C	5.509e^-4	0.921	INTRON Dg	TF binding site BDTNP1_TFBS_twi
2L	7911802	2L_7911802_SNP [dm3] 2L_7911802_SNP [dm6]	A	C	5.517e^-4	0.921	INTRON Snoo
2R	12507949	2R_12507949_SNP [dm3] 2R_16620444_SNP [dm6]	A	G	5.518e^-4	0.921	INTRON CG5065
3R	10629262	3R_10629262_SNP [dm3] 3R_14803540_SNP [dm6]	G	A	5.520e^-4	0.921	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4463054	2L_4463054_INS [dm3] 2L_4463054_INS [dm6]	A	AAAAGGTTAAGTGTTACC...	5.524e^-4	0.921	UTR_5_PRIME CG15443 UPSTREAM CG15436 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4463056	2L_4463056_DEL [dm3] 2L_4463056_DEL [dm6]	TGTAAAC	T	5.524e^-4	0.921	UTR_5_PRIME CG15443 UPSTREAM CG15436 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3214000	2L_3214000_SNP [dm3] 2L_3214000_SNP [dm6]	A	T	5.524e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8003242	X_8003242_SNP [dm3] X_8109209_SNP [dm6]	T	A	5.527e^-4	0.921	INTRON Gclc
X	8003243	X_8003243_SNP [dm3] X_8109210_SNP [dm6]	T	C	5.527e^-4	0.921	INTRON Gclc
X	13394919	X_13394919_SNP [dm3] X_13500886_SNP [dm6]	A	G	5.530e^-4	0.921	INTRON Neto
2R	17347039	2R_17347039_SNP [dm3] 2R_21459534_SNP [dm6]	G	A	5.557e^-4	0.921	INTRON Sdc
2R	20215861	2R_20215861_SNP [dm3] 2R_24328338_SNP [dm6]	G	A	5.557e^-4	0.921	UPSTREAM CR44810 INTRON CR44810
X	14853320	X_14853320_SNP [dm3] X_14959287_SNP [dm6]	T	G	5.558e^-4	0.921	INTRON eag	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14074428	2L_14074428_SNP [dm3] 2L_14074428_SNP [dm6]	A	C	5.559e^-4	0.921	INTRON nAChRalpha5
2L	14074431	2L_14074431_SNP [dm3] 2L_14074431_SNP [dm6]	G	C	5.559e^-4	0.921	INTRON nAChRalpha5
2R	13874003	2R_13874003_SNP [dm3] 2R_17986498_SNP [dm6]	G	A	5.563e^-4	0.921	INTRON dpr13
2R	13874004	2R_13874004_SNP [dm3] 2R_17986499_SNP [dm6]	C	A	5.563e^-4	0.921	INTRON dpr13
2L	4316624	2L_4316624_SNP [dm3] 2L_4316624_SNP [dm6]	G	A	5.564e^-4	0.921	DOWNSTREAM tutl INTRON tutl
X	12481595	X_12481595_SNP [dm3] X_12587562_SNP [dm6]	C	T	5.598e^-4	0.921	SYNONYMOUS_CODING LIMK1
3L	2085788	3L_2085788_SNP [dm3] 3L_2085788_SNP [dm6]	C	T	5.604e^-4	0.921	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9577928	3R_9577928_SNP [dm3] 3R_13752206_SNP [dm6]	T	A	5.605e^-4	0.921	INTRON CG34383
2L	6174009	2L_6174009_SNP [dm3] 2L_6174009_SNP [dm6]	C	T	5.607e^-4	0.921	INTERGENIC
X	18068338	X_18068338_SNP [dm3] X_18174305_SNP [dm6]	G	A	5.609e^-4	0.921	UTR_3_PRIME Frq1
2L	20241398	2L_20241398_SNP [dm3] 2L_20241398_SNP [dm6]	G	T	5.609e^-4	0.921	INTERGENIC
2L	13434509	2L_13434509_SNP [dm3] 2L_13434509_SNP [dm6]	C	T	5.634e^-4	0.921	INTRON CG42784	TF binding site mE1_TFBS_cad
3L	6612292	3L_6612292_SNP [dm3] 3L_6619192_SNP [dm6]	G	T	5.639e^-4	0.921	DOWNSTREAM CG8398 INTERGENIC
3R	14842989	3R_14842989_SNP [dm3] 3R_19017267_SNP [dm6]	G	C	5.643e^-4	0.921	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6701867	3L_6701867_SNP [dm3] 3L_6708767_SNP [dm6]	G	A	5.643e^-4	0.921	SYNONYMOUS_CODING CG8519
2R	17885076	2R_17885076_SNP [dm3] 2R_21997571_SNP [dm6]	T	A	5.658e^-4	0.921	INTRON CG34370
2L	6238471	2L_6238471_SNP [dm3] 2L_6238471_SNP [dm6]	A	T	5.659e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	8092106	2L_8092106_SNP [dm3] 2L_8092106_SNP [dm6]	T	G	5.664e^-4	0.921	INTRON Bsg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8309095	2L_8309095_SNP [dm3] 2L_8309095_SNP [dm6]	T	A	5.671e^-4	0.921	SYNONYMOUS_CODING CG7818 UPSTREAM Ostgamma DOWNSTREAM CG7810	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	8756577	3L_8756577_SNP [dm3] 3L_8763477_SNP [dm6]	A	C	5.674e^-4	0.921	INTRON Fhos
3L	8756596	3L_8756596_SNP [dm3] 3L_8763496_SNP [dm6]	G	A	5.674e^-4	0.921	INTRON Fhos
3L	2645866	3L_2645866_SNP [dm3] 3L_2645866_SNP [dm6]	A	G	5.699e^-4	0.921	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4921552	2R_4921552_SNP [dm3] 2R_9034047_SNP [dm6]	T	C	5.701e^-4	0.921	INTERGENIC
X	14300583	X_14300583_SNP [dm3] X_14406550_SNP [dm6]	A	C	5.710e^-4	0.921	INTRON dpr8
2L	8220975	2L_8220975_SNP [dm3] 2L_8220975_SNP [dm6]	T	A	5.723e^-4	0.921	UPSTREAM Snx6 DOWNSTREAM Pvr INTERGENIC	TF binding site mE1_TFBS_kn
2L	8081869	2L_8081869_SNP [dm3] 2L_8081869_SNP [dm6]	A	C	5.729e^-4	0.921	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13242849	3L_13242849_INS [dm3] 3L_13249749_INS [dm6]	A	AA	5.748e^-4	0.921	DOWNSTREAM tRNA:D2:69F INTRON caps
2L	17532520	2L_17532520_SNP [dm3] 2L_17532520_SNP [dm6]	A	G	5.750e^-4	0.921	UPSTREAM CG15145 INTERGENIC
3R	17978331	3R_17978331_SNP [dm3] 3R_22152609_SNP [dm6]	C	A	5.756e^-4	0.921	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	7488030	2R_7488030_SNP [dm3] 2R_11600525_SNP [dm6]	A	C	5.767e^-4	0.921	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7488076	2R_7488076_SNP [dm3] 2R_11600571_SNP [dm6]	C	T	5.767e^-4	0.921	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	12575786	2L_12575786_SNP [dm3] 2L_12575786_SNP [dm6]	A	G	5.797e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	13661601	3R_13661601_SNP [dm3] 3R_17835879_SNP [dm6]	G	A	5.822e^-4	0.921	INTRON tinc
X	3757696	X_3757696_SNP [dm3] X_3863663_SNP [dm6]	A	G	5.842e^-4	0.921	SYNONYMOUS_CODING yin UPSTREAM roX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13784288	2R_13784288_SNP [dm3] 2R_17896783_SNP [dm6]	A	G	5.842e^-4	0.921	INTRON Elk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1605240	3L_1605240_SNP [dm3] 3L_1605240_SNP [dm6]	A	C	5.862e^-4	0.921	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
X	9733635	X_9733635_SNP [dm3] X_9839602_SNP [dm6]	T	G	5.910e^-4	0.921	INTRON CG32698
2L	19272796	2L_19272796_SNP [dm3] 2L_19272796_SNP [dm6]	A	C	5.926e^-4	0.921	EXON CR44190
2L	19272803	2L_19272803_SNP [dm3] 2L_19272803_SNP [dm6]	A	T	5.926e^-4	0.921	EXON CR44190
3R	22736335	3R_22736335_INS [dm3] 3R_26910613_INS [dm6]	C	CTTCATCGAC	5.928e^-4	0.921	UTR_3_PRIME T48 DOWNSTREAM Ets97D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
3L	9259233	3L_9259233_SNP [dm3] 3L_9266133_SNP [dm6]	C	T	5.932e^-4	0.921	INTRON GluRIB
2L	11638603	2L_11638603_DEL [dm3] 2L_11638603_DEL [dm6]	AA	A	5.932e^-4	0.921	INTERGENIC
3R	9229628	3R_9229628_SNP [dm3] 3R_13403906_SNP [dm6]	A	C	5.947e^-4	0.921	NON_SYNONYMOUS_CODING yellow-e3 UPSTREAM CG33977	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9610816	X_9610816_SNP [dm3] X_9716783_SNP [dm6]	G	A	5.962e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	13541893	3L_13541893_INS [dm3] 3L_13548793_INS [dm6]	C	CGGACAC	5.978e^-4	0.921	INTRON bru-3
X	21215575	X_21215575_SNP [dm3] X_21344548_SNP [dm6]	T	G	5.986e^-4	0.921	UTR_3_PRIME fliI UPSTREAM dod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	17693124	3L_17693124_SNP [dm3] 3L_17700024_SNP [dm6]	G	T	5.986e^-4	0.921	INTRON Ccn
X	2040189	X_2040189_DEL [dm3] X_2146156_DEL [dm6]	GT	G	5.989e^-4	0.921	INTRON Pgd	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16186411	3L_16186411_SNP [dm3] 3L_16193311_SNP [dm6]	G	A	6.004e^-4	0.921	INTERGENIC
3L	17014327	3L_17014327_SNP [dm3] 3L_17021227_SNP [dm6]	C	G	6.004e^-4	0.921	SYNONYMOUS_CODING CG6652 DOWNSTREAM CG7728	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10223118	3R_10223118_SNP [dm3] 3R_14397396_SNP [dm6]	G	T	6.004e^-4	0.921	UPSTREAM mir-2281 INTRON cv-c
3R	9003161	3R_9003161_SNP [dm3] 3R_13177439_SNP [dm6]	G	C	6.004e^-4	0.921	INTERGENIC
3R	14781287	3R_14781287_SNP [dm3] 3R_18955565_SNP [dm6]	T	A	6.009e^-4	0.921	INTRON CG42613 & 1 other
3L	9196165	3L_9196165_SNP [dm3] 3L_9203065_SNP [dm6]	A	G	6.010e^-4	0.921	UTR_3_PRIME Slc45-1
2L	15347963	2L_15347963_SNP [dm3] 2L_15347963_SNP [dm6]	T	A	6.028e^-4	0.921	INTERGENIC
2L	4348706	2L_4348706_SNP [dm3] 2L_4348706_SNP [dm6]	A	T	6.029e^-4	0.921	UPSTREAM CR44699 DOWNSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7137725	X_7137725_SNP [dm3] X_7243692_SNP [dm6]	C	A	6.041e^-4	0.921	INTRON CR44357	TF binding site BDTNP1_TFBS_dl
3R	13485813	3R_13485813_SNP [dm3] 3R_17660091_SNP [dm6]	A	T	6.041e^-4	0.921	INTRON CG14322
3R	13485819	3R_13485819_SNP [dm3] 3R_17660097_SNP [dm6]	A	T	6.041e^-4	0.921	INTRON CG14322
2L	11198480	2L_11198480_SNP [dm3] 2L_11198480_SNP [dm6]	A	G	6.047e^-4	0.921	INTRON Ca-beta
2L	8307661	2L_8307661_SNP [dm3] 2L_8307661_SNP [dm6]	G	C	6.049e^-4	0.921	SYNONYMOUS_CODING Ostgamma UPSTREAM CG7818 DOWNSTREAM CG7840	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5869895	X_5869895_SNP [dm3] X_5975862_SNP [dm6]	T	C	6.067e^-4	0.921	INTRON Grip
X	5869910	X_5869910_SNP [dm3] X_5975877_SNP [dm6]	G	T	6.067e^-4	0.921	INTRON Grip
3L	12628278	3L_12628278_SNP [dm3] 3L_12635178_SNP [dm6]	T	G	6.102e^-4	0.921	INTRON CR32111	TF binding site mE1_TFBS_HSA
X	12481841	X_12481841_SNP [dm3] X_12587808_SNP [dm6]	A	G	6.118e^-4	0.921	SYNONYMOUS_CODING LIMK1
3L	16660577	3L_16660577_SNP [dm3] 3L_16667477_SNP [dm6]	T	G	6.152e^-4	0.921	INTRON Galphaf	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	17817239	2L_17817239_SNP [dm3] 2L_17817239_SNP [dm6]	A	T	6.152e^-4	0.921	INTRON CadN2
2L	17817299	2L_17817299_SNP [dm3] 2L_17817299_SNP [dm6]	G	T	6.152e^-4	0.921	INTRON CadN2
3R	25577379	3R_25577379_INS [dm3] 3R_29751657_INS [dm6]	T	TAT	6.156e^-4	0.921	INTRON yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12206864	3L_12206864_SNP [dm3] 3L_12213764_SNP [dm6]	G	T	6.162e^-4	0.921	SYNONYMOUS_CODING app
3R	10629337	3R_10629337_SNP [dm3] 3R_14803615_SNP [dm6]	T	A	6.166e^-4	0.921	SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4700783	3L_4700783_SNP [dm3] 3L_4700783_SNP [dm6]	G	A	6.180e^-4	0.921	INTRON RhoGEF64C
X	12165431	X_12165431_SNP [dm3] X_12271398_SNP [dm6]	A	T	6.193e^-4	0.921	INTRON Ten-a
X	12165525	X_12165525_SNP [dm3] X_12271492_SNP [dm6]	C	T	6.193e^-4	0.921	INTRON Ten-a
3L	10787252	3L_10787252_SNP [dm3] 3L_10794152_SNP [dm6]	T	G	6.194e^-4	0.921	UPSTREAM CR44546 INTERGENIC
2R	6176646	2R_6176646_INS [dm3] 2R_10289141_INS [dm6]	T	TT	6.201e^-4	0.921	INTRON CAP
3R	9610515	3R_9610515_SNP [dm3] 3R_13784793_SNP [dm6]	C	T	6.208e^-4	0.921	SYNONYMOUS_CODING Dip-B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20731933	2R_20731933_SNP [dm3] 2R_24844410_SNP [dm6]	C	G	6.210e^-4	0.921	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18820131	2R_18820131_SNP [dm3] 2R_22932608_SNP [dm6]	T	C	6.213e^-4	0.921	NON_SYNONYMOUS_CODING CG3788 DOWNSTREAM CG42678
2R	21059060	2R_21059060_DEL [dm3] 2R_25171537_DEL [dm6]	AATACATTAAAAATT...	A	6.220e^-4	0.921	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_Kr
2R	21059080	2R_21059080_SNP [dm3] 2R_25171557_SNP [dm6]	A	T	6.220e^-4	0.921	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_Kr
2L	6999085	2L_6999085_SNP [dm3] 2L_6999085_SNP [dm6]	T	A	6.223e^-4	0.921	INTRON uif
2R	18967516	2R_18967516_SNP [dm3] 2R_23079993_SNP [dm6]	T	C	6.225e^-4	0.921	UPSTREAM Art7 & 2 others INTERGENIC
3R	23813292	3R_23813292_INS [dm3] 3R_27987570_INS [dm6]	A	AA	6.225e^-4	0.921	INTRON betaTub97EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9416427	2L_9416427_SNP [dm3] 2L_9416427_SNP [dm6]	G	A	6.227e^-4	0.921	UPSTREAM Mco1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18161563	3R_18161563_SNP [dm3] 3R_22335841_SNP [dm6]	C	T	6.227e^-4	0.921	INTRON CG5388
3R	9230696	3R_9230696_SNP [dm3] 3R_13404974_SNP [dm6]	T	C	6.227e^-4	0.921	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9230718	3R_9230718_SNP [dm3] 3R_13404996_SNP [dm6]	G	A	6.227e^-4	0.921	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9230722	3R_9230722_SNP [dm3] 3R_13405000_SNP [dm6]	A	T	6.227e^-4	0.921	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9230771	3R_9230771_DEL [dm3] 3R_13405049_DEL [dm6]	AATGTAAAAATTTAACACGA...	A	6.227e^-4	0.921	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6092565	3L_6092565_SNP [dm3] 3L_6099465_SNP [dm6]	C	A	6.229e^-4	0.921	INTRON Ets65A
2R	16115383	2R_16115383_SNP [dm3] 2R_20227878_SNP [dm6]	C	A	6.229e^-4	0.921	INTERGENIC
2R	18196385	2R_18196385_SNP [dm3] 2R_22308880_SNP [dm6]	A	C	6.231e^-4	0.921	INTRON wdp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5554022	X_5554022_SNP [dm3] X_5659989_SNP [dm6]	G	T	6.232e^-4	0.921	INTRON CG42265
X	5554061	X_5554061_DEL [dm3] X_5660028_DEL [dm6]	GCATTTAACATAATAGCATA...	A	6.232e^-4	0.921	INTRON CG42265

By genomic position
Variant impact
Gene name

Larvae phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results