DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.824e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.07897
In_3R_Mo	0.04831

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	6.4679	0.0394

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2649 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	7055730	2L_7055730_SNP [dm3] 2L_7055730_SNP [dm6]	G	T	2.202e^-7	0.258	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4018931	3L_4018931_SNP [dm3] 3L_4018931_SNP [dm6]	A	C	3.587e^-7	0.258	UTR_5_PRIME fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2505319	2L_2505319_SNP [dm3] 2L_2505319_SNP [dm6]	G	A	4.130e^-7	0.258	INTERGENIC
3L	4589484	3L_4589484_SNP [dm3] 3L_4589484_SNP [dm6]	C	A	7.688e^-7	0.276	INTRON CG42540
3L	4589469	3L_4589469_SNP [dm3] 3L_4589469_SNP [dm6]	A	G	9.064e^-7	0.276	INTRON CG42540
3L	18379105	3L_18379105_SNP [dm3] 3L_18386005_SNP [dm6]	T	A	1.003e^-6	0.276	INTERGENIC
3R	9684126	3R_9684126_SNP [dm3] 3R_13858404_SNP [dm6]	C	T	1.069e^-6	0.276	INTERGENIC
3L	4589481	3L_4589481_SNP [dm3] 3L_4589481_SNP [dm6]	G	T	1.178e^-6	0.276	INTRON CG42540
3L	18380014	3L_18380014_DEL [dm3] 3L_18386914_DEL [dm6]	AAAATTTGTAT...	A	1.579e^-6	0.309	INTERGENIC
3L	18380048	3L_18380048_DEL [dm3] 3L_18386948_DEL [dm6]	ATAAA	A	1.661e^-6	0.309	INTERGENIC
3L	4589486	3L_4589486_SNP [dm3] 3L_4589486_SNP [dm6]	G	A	1.835e^-6	0.309	INTRON CG42540
3L	18379821	3L_18379821_SNP [dm3] 3L_18386721_SNP [dm6]	C	T	2.202e^-6	0.309	INTERGENIC
X	20938898	X_20938898_SNP [dm3] X_21067871_SNP [dm6]	T	C	2.342e^-6	0.309	UPSTREAM CG32512 INTRON bves
3L	4589482	3L_4589482_SNP [dm3] 3L_4589482_SNP [dm6]	A	C	2.510e^-6	0.309	INTRON CG42540
2L	2505215	2L_2505215_SNP [dm3] 2L_2505215_SNP [dm6]	T	A	2.618e^-6	0.309	INTERGENIC
2L	5669845	2L_5669845_SNP [dm3] 2L_5669845_SNP [dm6]	G	T	2.652e^-6	0.309	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26352963	3R_26352963_SNP [dm3] 3R_30527241_SNP [dm6]	G	A	3.229e^-6	0.309	UPSTREAM jdp INTERGENIC
3L	18379826	3L_18379826_SNP [dm3] 3L_18386726_SNP [dm6]	C	T	3.619e^-6	0.309	INTERGENIC
3L	18380031	3L_18380031_DEL [dm3] 3L_18386931_DEL [dm6]	AAACTCAGAGCTT...	A	3.638e^-6	0.309	INTERGENIC
3R	10410415	3R_10410415_SNP [dm3] 3R_14584693_SNP [dm6]	C	T	3.709e^-6	0.309	INTRON stumps
2R	6598250	2R_6598250_SNP [dm3] 2R_10710745_SNP [dm6]	G	A	3.990e^-6	0.309	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_sens
3L	10704320	3L_10704320_SNP [dm3] 3L_10711220_SNP [dm6]	G	A	4.367e^-6	0.309	INTERGENIC
3L	18380056	3L_18380056_SNP [dm3] 3L_18386956_SNP [dm6]	C	A	4.381e^-6	0.309	INTERGENIC
3L	18380008	3L_18380008_SNP [dm3] 3L_18386908_SNP [dm6]	T	C	4.619e^-6	0.309	INTERGENIC
2L	15412016	2L_15412016_SNP [dm3] 2L_15412016_SNP [dm6]	C	A	4.657e^-6	0.309	INTERGENIC
X	609133	X_609133_SNP [dm3] X_715100_SNP [dm6]	G	A	4.701e^-6	0.309	INTRON sdk
3R	26352884	3R_26352884_SNP [dm3] 3R_30527162_SNP [dm6]	G	A	4.904e^-6	0.309	UPSTREAM jdp INTERGENIC
2R	6598784	2R_6598784_SNP [dm3] 2R_10711279_SNP [dm6]	C	A	5.013e^-6	0.309	SYNONYMOUS_CODING stan
3R	8171820	3R_8171820_SNP [dm3] 3R_12346098_SNP [dm6]	A	T	5.029e^-6	0.309	INTERGENIC
3L	18380060	3L_18380060_SNP [dm3] 3L_18386960_SNP [dm6]	G	A	5.183e^-6	0.309	INTERGENIC
3L	18379790	3L_18379790_DEL [dm3] 3L_18386690_DEL [dm6]	TT	T	5.258e^-6	0.309	INTERGENIC
3L	18379966	3L_18379966_SNP [dm3] 3L_18386866_SNP [dm6]	T	G	5.397e^-6	0.309	INTERGENIC
3L	18380003	3L_18380003_DEL [dm3] 3L_18386903_DEL [dm6]	AA	A	5.434e^-6	0.309	INTERGENIC
3R	26352883	3R_26352883_SNP [dm3] 3R_30527161_SNP [dm6]	T	C	5.664e^-6	0.309	UPSTREAM jdp INTERGENIC
2L	7055720	2L_7055720_SNP [dm3] 2L_7055720_SNP [dm6]	G	A	5.759e^-6	0.309	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13238502	3L_13238502_SNP [dm3] 3L_13245402_SNP [dm6]	G	A	6.220e^-6	0.309	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26547243	3R_26547243_SNP [dm3] 3R_30721521_SNP [dm6]	T	G	6.259e^-6	0.309	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7998229	3R_7998229_SNP [dm3] 3R_12172507_SNP [dm6]	A	G	6.319e^-6	0.309	INTERGENIC
X	20561887	X_20561887_SNP [dm3] X_20690860_SNP [dm6]	C	G	6.435e^-6	0.309	UTR_5_PRIME run UPSTREAM CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	18378414	3L_18378414_SNP [dm3] 3L_18385314_SNP [dm6]	T	G	6.687e^-6	0.314	INTERGENIC
3L	18378438	3L_18378438_SNP [dm3] 3L_18385338_SNP [dm6]	G	T	6.984e^-6	0.32	INTERGENIC
3L	18380082	3L_18380082_SNP [dm3] 3L_18386982_SNP [dm6]	C	T	7.555e^-6	0.33	INTERGENIC
3L	18379837	3L_18379837_SNP [dm3] 3L_18386737_SNP [dm6]	T	A	7.576e^-6	0.33	INTERGENIC
3R	26352892	3R_26352892_SNP [dm3] 3R_30527170_SNP [dm6]	T	C	7.876e^-6	0.332	UPSTREAM jdp INTERGENIC
3R	7632221	3R_7632221_SNP [dm3] 3R_11806499_SNP [dm6]	G	T	8.222e^-6	0.332	UTR_5_PRIME ClC-a INTRON ClC-a	TF binding site mE1_TFBS_HSA
3L	18379983	3L_18379983_SNP [dm3] 3L_18386883_SNP [dm6]	G	A	8.326e^-6	0.332	INTERGENIC
2L	5937659	2L_5937659_SNP [dm3] 2L_5937659_SNP [dm6]	C	T	8.332e^-6	0.332	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26352878	3R_26352878_SNP [dm3] 3R_30527156_SNP [dm6]	T	C	8.605e^-6	0.332	UPSTREAM jdp INTERGENIC
3L	18380073	3L_18380073_SNP [dm3] 3L_18386973_SNP [dm6]	T	C	8.697e^-6	0.332	INTERGENIC
2L	11554134	2L_11554134_SNP [dm3] 2L_11554134_SNP [dm6]	C	A	8.853e^-6	0.332	INTERGENIC
X	18169458	X_18169458_SNP [dm3] X_18275425_SNP [dm6]	G	T	9.415e^-6	0.346	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4018694	3L_4018694_SNP [dm3] 3L_4018694_SNP [dm6]	A	T	9.815e^-6	0.348	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26354640	3R_26354640_DEL [dm3] 3R_30528918_DEL [dm6]	GG	G	9.834e^-6	0.348	DOWNSTREAM CR45552 INTRON CR45552
3L	14362115	3L_14362115_SNP [dm3] 3L_14369015_SNP [dm6]	T	C	1.054e^-5	0.355	UTR_3_PRIME CG13481 DOWNSTREAM fz
2L	7598483	2L_7598483_SNP [dm3] 2L_7598483_SNP [dm6]	A	C	1.070e^-5	0.355	INTERGENIC
2R	9324791	2R_9324791_SNP [dm3] 2R_13437286_SNP [dm6]	C	G	1.076e^-5	0.355	UTR_5_PRIME CG42321 UPSTREAM tRNA:CR30509 INTRON CG42321
3L	4018706	3L_4018706_SNP [dm3] 3L_4018706_SNP [dm6]	T	C	1.080e^-5	0.355	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20352874	X_20352874_SNP [dm3] X_20481847_SNP [dm6]	A	C	1.130e^-5	0.365	INTRON RhoGAP19D	TF binding site mE1_TFBS_Trl
3L	4018715	3L_4018715_SNP [dm3] 3L_4018715_SNP [dm6]	A	T	1.167e^-5	0.371	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18380009	3L_18380009_SNP [dm3] 3L_18386909_SNP [dm6]	G	A	1.187e^-5	0.371	INTERGENIC
X	7574618	X_7574618_SNP [dm3] X_7680585_SNP [dm6]	C	A	1.235e^-5	0.38	UPSTREAM CR45667 & 1 other DOWNSTREAM CR45665 INTERGENIC	TF binding site mE1_TFBS_Trl
X	15312244	X_15312244_SNP [dm3] X_15418211_SNP [dm6]	A	G	1.273e^-5	0.385	INTRON Cngl
X	21861301	X_21861301_SNP [dm3] X_22459465_SNP [dm6]	C	T	1.342e^-5	0.394	INTRON CG14619	transposable element FlyBase
3L	9920968	3L_9920968_SNP [dm3] 3L_9927868_SNP [dm6]	C	T	1.345e^-5	0.394	INTRON CG34356	TF binding site mE1_TFBS_sbb
2L	2599430	2L_2599430_SNP [dm3] 2L_2599430_SNP [dm6]	G	T	1.383e^-5	0.394	INTRON CR44790
3L	18379925	3L_18379925_SNP [dm3] 3L_18386825_SNP [dm6]	G	A	1.393e^-5	0.394	INTERGENIC
3L	18379950	3L_18379950_SNP [dm3] 3L_18386850_SNP [dm6]	T	C	1.407e^-5	0.394	INTERGENIC
3R	26352992	3R_26352992_SNP [dm3] 3R_30527270_SNP [dm6]	T	C	1.441e^-5	0.398	UPSTREAM jdp INTERGENIC
3R	26352784	3R_26352784_SNP [dm3] 3R_30527062_SNP [dm6]	G	A	1.520e^-5	0.4	UPSTREAM jdp INTERGENIC
3L	2312434	3L_2312434_SNP [dm3] 3L_2312434_SNP [dm6]	G	T	1.523e^-5	0.4	INTERGENIC
2R	6598244	2R_6598244_SNP [dm3] 2R_10710739_SNP [dm6]	C	G	1.569e^-5	0.4	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_sens
3L	18379122	3L_18379122_SNP [dm3] 3L_18386022_SNP [dm6]	A	T	1.571e^-5	0.4	INTERGENIC
2L	5937599	2L_5937599_SNP [dm3] 2L_5937599_SNP [dm6]	C	T	1.584e^-5	0.4	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18380074	3L_18380074_SNP [dm3] 3L_18386974_SNP [dm6]	T	C	1.594e^-5	0.4	INTERGENIC
3R	13593504	3R_13593504_SNP [dm3] 3R_17767782_SNP [dm6]	A	T	1.599e^-5	0.4	DOWNSTREAM CG43102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21861423	X_21861423_INS [dm3] X_22459587_INS [dm6]	T	TT	1.626e^-5	0.401	INTRON CG14619	transposable element FlyBase
3L	4018665	3L_4018665_SNP [dm3] 3L_4018665_SNP [dm6]	T	A	1.656e^-5	0.402	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15411856	2L_15411856_SNP [dm3] 2L_15411856_SNP [dm6]	A	G	1.678e^-5	0.402	INTERGENIC
X	11578954	X_11578954_DEL [dm3] X_11684921_DEL [dm6]	GATCGCTGATCGTGTTAATA...	G	1.724e^-5	0.402	INTRON bif
3L	4018666	3L_4018666_SNP [dm3] 3L_4018666_SNP [dm6]	T	A	1.776e^-5	0.402	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	718433	X_718433_SNP [dm3] X_824400_SNP [dm6]	C	T	1.791e^-5	0.402	INTRON CG43867	TF binding site mE1_TFBS_HSA
3L	13238497	3L_13238497_SNP [dm3] 3L_13245397_SNP [dm6]	G	T	1.794e^-5	0.402	INTRON caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26353012	3R_26353012_SNP [dm3] 3R_30527290_SNP [dm6]	C	T	1.802e^-5	0.402	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3R	13592132	3R_13592132_SNP [dm3] 3R_17766410_SNP [dm6]	C	T	1.840e^-5	0.402	INTERGENIC
3L	14362076	3L_14362076_SNP [dm3] 3L_14368976_SNP [dm6]	G	A	1.841e^-5	0.402	UTR_3_PRIME CG13481 DOWNSTREAM CG13481 & 1 other
2L	7598488	2L_7598488_SNP [dm3] 2L_7598488_SNP [dm6]	A	T	1.843e^-5	0.402	INTERGENIC
2L	2812366	2L_2812366_SNP [dm3] 2L_2812366_SNP [dm6]	G	C	1.882e^-5	0.404	UTR_3_PRIME daw UPSTREAM CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4018685	3L_4018685_SNP [dm3] 3L_4018685_SNP [dm6]	C	T	1.927e^-5	0.404	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2599423	2L_2599423_SNP [dm3] 2L_2599423_SNP [dm6]	T	A	2.002e^-5	0.404	INTRON CR44790
3R	13592584	3R_13592584_SNP [dm3] 3R_17766862_SNP [dm6]	C	A	2.006e^-5	0.404	INTERGENIC
2L	20357256	2L_20357256_SNP [dm3] 2L_20357256_SNP [dm6]	C	G	2.029e^-5	0.404	NON_SYNONYMOUS_CODING RtGEF INTRON RtGEF
X	5054894	X_5054894_SNP [dm3] X_5160861_SNP [dm6]	C	T	2.033e^-5	0.404	INTRON rg & 1 other
3L	12000217	3L_12000217_SNP [dm3] 3L_12007117_SNP [dm6]	G	T	2.044e^-5	0.404	SYNONYMOUS_CODING CG6928	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15312785	X_15312785_DEL [dm3] X_15418752_DEL [dm6]	TT	T	2.050e^-5	0.404	INTRON Cngl
3R	7927287	3R_7927287_SNP [dm3] 3R_12101565_SNP [dm6]	T	C	2.054e^-5	0.404	INTRON dpr17
2L	12452848	2L_12452848_SNP [dm3] 2L_12452848_SNP [dm6]	A	G	2.068e^-5	0.404	NON_SYNONYMOUS_CODING CG5418 UPSTREAM CR17024 DOWNSTREAM Oatp33Eb	TF binding site mE1_TFBS_cad
2L	17878291	2L_17878291_SNP [dm3] 2L_17878291_SNP [dm6]	C	T	2.233e^-5	0.428	INTERGENIC
3R	20401203	3R_20401203_SNP [dm3] 3R_24575481_SNP [dm6]	G	T	2.235e^-5	0.428	INTRON CG13624
X	10267443	X_10267443_SNP [dm3] X_10373410_SNP [dm6]	T	C	2.322e^-5	0.435	SYNONYMOUS_CODING CG32686 INTRON CG17841
2L	2599425	2L_2599425_SNP [dm3] 2L_2599425_SNP [dm6]	T	G	2.326e^-5	0.435	INTRON CR44790
3L	13892920	3L_13892920_DEL [dm3] 3L_13899820_DEL [dm6]	CC	C	2.381e^-5	0.435	INTRON dysc
X	3739507	X_3739507_SNP [dm3] X_3845474_SNP [dm6]	C	T	2.386e^-5	0.435	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24159246	3R_24159246_SNP [dm3] 3R_28333524_SNP [dm6]	C	T	2.411e^-5	0.435	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12452774	2L_12452774_SNP [dm3] 2L_12452774_SNP [dm6]	G	C	2.430e^-5	0.435	NON_SYNONYMOUS_CODING CG5418 UPSTREAM CR17024 DOWNSTREAM Oatp33Eb	TF binding site mE1_TFBS_cad
X	9400217	X_9400217_SNP [dm3] X_9506184_SNP [dm6]	G	T	2.463e^-5	0.435	UTR_3_PRIME CG32700 DOWNSTREAM CG32700
3L	14362104	3L_14362104_SNP [dm3] 3L_14369004_SNP [dm6]	T	A	2.530e^-5	0.435	UTR_3_PRIME CG13481 DOWNSTREAM fz
X	15312253	X_15312253_INS [dm3] X_15418220_INS [dm6]	T	TTT	2.573e^-5	0.435	INTRON Cngl
3L	8195619	3L_8195619_SNP [dm3] 3L_8202519_SNP [dm6]	T	A	2.585e^-5	0.435	UPSTREAM CG13679 & 1 other INTERGENIC
X	8435289	X_8435289_SNP [dm3] X_8541256_SNP [dm6]	A	T	2.635e^-5	0.435	INTRON Nrg
X	15312248	X_15312248_SNP [dm3] X_15418215_SNP [dm6]	C	A	2.640e^-5	0.435	INTRON Cngl
2L	7055716	2L_7055716_SNP [dm3] 2L_7055716_SNP [dm6]	C	T	2.649e^-5	0.435	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5796020	3L_5796020_SNP [dm3] 3L_5802920_SNP [dm6]	A	G	2.666e^-5	0.435	UPSTREAM CG42272 INTRON S6k	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12572945	2R_12572945_SNP [dm3] 2R_16685440_SNP [dm6]	A	T	2.678e^-5	0.435	INTRON CG30463	TF binding site mE1_TFBS_HSA
3L	3358536	3L_3358536_SNP [dm3] 3L_3358536_SNP [dm6]	A	G	2.679e^-5	0.435	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	7574611	X_7574611_SNP [dm3] X_7680578_SNP [dm6]	T	A	2.687e^-5	0.435	UPSTREAM CR45667 & 1 other DOWNSTREAM CR45665 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	1913502	2R_1913502_SNP [dm3] 2R_6025997_SNP [dm6]	C	T	2.691e^-5	0.435	DOWNSTREAM SCAP INTERGENIC
3R	20401201	3R_20401201_SNP [dm3] 3R_24575479_SNP [dm6]	A	T	2.721e^-5	0.435	INTRON CG13624
3R	7993448	3R_7993448_SNP [dm3] 3R_12167726_SNP [dm6]	A	T	2.757e^-5	0.435	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2812420	2L_2812420_DEL [dm3] 2L_2812420_DEL [dm6]	CAG	C	2.771e^-5	0.435	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5938192	2L_5938192_SNP [dm3] 2L_5938192_SNP [dm6]	G	A	2.780e^-5	0.435	UTR_3_PRIME dsf	TF binding site mE1_TFBS_cad
3L	18378516	3L_18378516_SNP [dm3] 3L_18385416_SNP [dm6]	A	C	2.859e^-5	0.439	INTERGENIC
3R	20401199	3R_20401199_INS [dm3] 3R_24575477_INS [dm6]	C	CTCC	2.862e^-5	0.439	INTRON CG13624
3R	9408544	3R_9408544_SNP [dm3] 3R_13582822_SNP [dm6]	C	T	2.877e^-5	0.439	INTERGENIC	TF binding site mE1_TFBS_inv
X	20352861	X_20352861_SNP [dm3] X_20481834_SNP [dm6]	T	A	2.969e^-5	0.446	INTRON RhoGAP19D	TF binding site mE1_TFBS_Trl
3L	5255586	3L_5255586_SNP [dm3] 3L_5262486_SNP [dm6]	T	C	2.969e^-5	0.446	INTRON shep
3L	9921079	3L_9921079_SNP [dm3] 3L_9927979_SNP [dm6]	C	G	3.033e^-5	0.451	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26352516	3R_26352516_SNP [dm3] 3R_30526794_SNP [dm6]	C	A	3.107e^-5	0.459	INTRON jdp
3L	14942668	3L_14942668_SNP [dm3] 3L_14949568_SNP [dm6]	A	G	3.186e^-5	0.461	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10864714	3L_10864714_SNP [dm3] 3L_10871614_SNP [dm6]	G	T	3.191e^-5	0.461	SYNONYMOUS_CODING tna	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8703848	X_8703848_DEL [dm3] X_8809815_DEL [dm6]	ACCACCCCC	TTT	3.208e^-5	0.461	INTERGENIC
X	20905617	X_20905617_SNP [dm3] X_21034590_SNP [dm6]	G	C	3.252e^-5	0.461	UPSTREAM Ntf-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med transposable element FlyBase
3R	11508870	3R_11508870_SNP [dm3] 3R_15683148_SNP [dm6]	C	T	3.257e^-5	0.461	INTRON pxb	TF binding site mE1_TFBS_Kr
2L	5937593	2L_5937593_SNP [dm3] 2L_5937593_SNP [dm6]	C	T	3.275e^-5	0.461	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15294646	X_15294646_SNP [dm3] X_15400613_SNP [dm6]	T	C	3.333e^-5	0.461	INTRON Cngl
2L	18893458	2L_18893458_SNP [dm3] 2L_18893458_SNP [dm6]	A	C	3.334e^-5	0.461	UPSTREAM CR44737 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26604089	3R_26604089_SNP [dm3] 3R_30778367_SNP [dm6]	T	G	3.358e^-5	0.461	INTRON zfh1
X	20938857	X_20938857_INS [dm3] X_21067830_INS [dm6]	T	TAT	3.370e^-5	0.461	UPSTREAM CG32512 INTRON bves
3R	19346098	3R_19346098_SNP [dm3] 3R_23520376_SNP [dm6]	T	C	3.411e^-5	0.464	SYNONYMOUS_CODING CG10177 UPSTREAM Irk2	TF binding site mE1_TFBS_cad
X	10148523	X_10148523_SNP [dm3] X_10254490_SNP [dm6]	G	T	3.463e^-5	0.467	INTRON Hk
2L	2599412	2L_2599412_SNP [dm3] 2L_2599412_SNP [dm6]	A	G	3.491e^-5	0.468	INTRON CR44790
2L	17878294	2L_17878294_SNP [dm3] 2L_17878294_SNP [dm6]	G	C	3.590e^-5	0.478	INTERGENIC
X	15312306	X_15312306_SNP [dm3] X_15418273_SNP [dm6]	G	C	3.716e^-5	0.486	INTRON Cngl
3L	7836432	3L_7836432_SNP [dm3] 3L_7843332_SNP [dm6]	C	G	3.723e^-5	0.486	INTRON Pdp1	regulatory region REDfly_CRMs
3R	25517435	3R_25517435_SNP [dm3] 3R_29691713_SNP [dm6]	C	T	3.736e^-5	0.486	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18368812	3R_18368812_SNP [dm3] 3R_22543090_SNP [dm6]	A	T	3.779e^-5	0.486	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
X	15311553	X_15311553_SNP [dm3] X_15417520_SNP [dm6]	A	G	3.785e^-5	0.486	INTRON Cngl
2L	14433781	2L_14433781_DEL [dm3] 2L_14433781_DEL [dm6]	ACACTTTGAGAATA...	A	3.874e^-5	0.492	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	4842233	2L_4842233_SNP [dm3] 2L_4842233_SNP [dm6]	T	A	3.898e^-5	0.492	UTR_3_PRIME mxt DOWNSTREAM CG12194 & 1 other
3R	8191365	3R_8191365_SNP [dm3] 3R_12365643_SNP [dm6]	A	T	3.964e^-5	0.492	UPSTREAM Tim17a1 DOWNSTREAM GstD9 INTRON GstD10
3L	18379168	3L_18379168_SNP [dm3] 3L_18386068_SNP [dm6]	T	A	3.984e^-5	0.492	INTERGENIC
3L	13158269	3L_13158269_SNP [dm3] 3L_13165169_SNP [dm6]	A	T	4.025e^-5	0.492	INTERGENIC
3R	22769428	3R_22769428_SNP [dm3] 3R_26943706_SNP [dm6]	C	T	4.050e^-5	0.492	SYNONYMOUS_CODING sda
3R	14861735	3R_14861735_SNP [dm3] 3R_19036013_SNP [dm6]	G	C	4.120e^-5	0.492	INTRON CG6026	TF binding site mE1_TFBS_inv
3R	7927428	3R_7927428_SNP [dm3] 3R_12101706_SNP [dm6]	T	C	4.140e^-5	0.492	INTRON dpr17
X	16302204	X_16302204_DEL [dm3] X_16408171_DEL [dm6]	ACGGGCATGGGTACGGGCAT...	A	4.157e^-5	0.492	UPSTREAM CG4301 INTRON CG4301
3R	18368767	3R_18368767_SNP [dm3] 3R_22543045_SNP [dm6]	G	C	4.162e^-5	0.492	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
3R	9408563	3R_9408563_SNP [dm3] 3R_13582841_SNP [dm6]	T	A	4.163e^-5	0.492	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25373166	3R_25373166_SNP [dm3] 3R_29547444_SNP [dm6]	G	T	4.197e^-5	0.492	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5939826	2L_5939826_SNP [dm3] 2L_5939826_SNP [dm6]	T	G	4.238e^-5	0.492	UPSTREAM CR45288 DOWNSTREAM dsf INTERGENIC
3R	10410445	3R_10410445_SNP [dm3] 3R_14584723_SNP [dm6]	C	A	4.239e^-5	0.492	INTRON stumps
X	3157985	X_3157985_SNP [dm3] X_3263952_SNP [dm6]	G	T	4.255e^-5	0.492	INTRON dnc
3L	10705240	3L_10705240_SNP [dm3] 3L_10712140_SNP [dm6]	C	G	4.260e^-5	0.492	INTERGENIC
3R	19032697	3R_19032697_SNP [dm3] 3R_23206975_SNP [dm6]	A	T	4.327e^-5	0.492	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	26352336	3R_26352336_SNP [dm3] 3R_30526614_SNP [dm6]	T	G	4.365e^-5	0.492	INTRON jdp
3R	25397032	3R_25397032_SNP [dm3] 3R_29571310_SNP [dm6]	G	T	4.377e^-5	0.492	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2812417	2L_2812417_SNP [dm3] 2L_2812417_SNP [dm6]	A	C	4.379e^-5	0.492	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	21252662	3L_21252662_SNP [dm3] 3L_21259562_SNP [dm6]	C	T	4.380e^-5	0.492	DOWNSTREAM CG43218 INTRON Eip78C
3L	21282407	3L_21282407_SNP [dm3] 3L_21289307_SNP [dm6]	A	C	4.404e^-5	0.492	SYNONYMOUS_CODING pzg	TF binding site mE1_TFBS_chinmo
X	815043	X_815043_SNP [dm3] X_921010_SNP [dm6]	A	G	4.503e^-5	0.5	INTRON CG43867
3L	6838832	3L_6838832_SNP [dm3] 3L_6845732_SNP [dm6]	C	T	4.544e^-5	0.501	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	2812405	2L_2812405_SNP [dm3] 2L_2812405_SNP [dm6]	T	C	4.566e^-5	0.501	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	4018651	3L_4018651_SNP [dm3] 3L_4018651_SNP [dm6]	T	C	4.634e^-5	0.501	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5408407	3L_5408407_SNP [dm3] 3L_5415307_SNP [dm6]	G	A	4.657e^-5	0.501	INTERGENIC
3R	26352942	3R_26352942_DEL [dm3] 3R_30527220_DEL [dm6]	GG	G	4.672e^-5	0.501	UPSTREAM jdp INTERGENIC
3L	5408416	3L_5408416_SNP [dm3] 3L_5415316_SNP [dm6]	T	C	4.677e^-5	0.501	INTERGENIC
2R	13273042	2R_13273042_SNP [dm3] 2R_17385537_SNP [dm6]	G	C	4.789e^-5	0.51	INTERGENIC
2L	5934456	2L_5934456_SNP [dm3] 2L_5934456_SNP [dm6]	T	A	4.896e^-5	0.519	INTRON dsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	1070934	3L_1070934_SNP [dm3] 3L_1070934_SNP [dm6]	G	A	4.926e^-5	0.519	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6598457	2R_6598457_SNP [dm3] 2R_10710952_SNP [dm6]	A	C	5.019e^-5	0.523	SYNONYMOUS_CODING stan
2L	2812409	2L_2812409_INS [dm3] 2L_2812409_INS [dm6]	TT	AGCCAA	5.061e^-5	0.523	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	7997584	3R_7997584_SNP [dm3] 3R_12171862_SNP [dm6]	C	T	5.065e^-5	0.523	INTERGENIC
2R	5972997	2R_5972997_SNP [dm3] 2R_10085492_SNP [dm6]	G	A	5.116e^-5	0.523	UTR_3_PRIME sut4 INTRON CG2269
3L	7834076	3L_7834076_SNP [dm3] 3L_7840976_SNP [dm6]	A	T	5.131e^-5	0.523	INTRON Pdp1	regulatory region REDfly_CRMs
2L	6980094	2L_6980094_SNP [dm3] 2L_6980094_SNP [dm6]	C	T	5.134e^-5	0.523	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23139265	3R_23139265_SNP [dm3] 3R_27313543_SNP [dm6]	G	T	5.177e^-5	0.525	INTRON CG3339	TF binding site BDTNP1_TFBS_twi
2R	19597637	2R_19597637_SNP [dm3] 2R_23710114_SNP [dm6]	A	G	5.268e^-5	0.527	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17139392	2R_17139392_SNP [dm3] 2R_21251887_SNP [dm6]	G	C	5.276e^-5	0.527	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
2L	10446394	2L_10446394_SNP [dm3] 2L_10446394_SNP [dm6]	G	A	5.358e^-5	0.527	INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	14417634	2L_14417634_SNP [dm3] 2L_14417634_SNP [dm6]	G	T	5.405e^-5	0.527	UPSTREAM Pburs INTERGENIC
3L	18379776	3L_18379776_SNP [dm3] 3L_18386676_SNP [dm6]	A	T	5.406e^-5	0.527	INTERGENIC
3L	6698532	3L_6698532_SNP [dm3] 3L_6705432_SNP [dm6]	A	G	5.411e^-5	0.527	UTR_5_PRIME CG8519
3R	12533785	3R_12533785_SNP [dm3] 3R_16708063_SNP [dm6]	A	G	5.500e^-5	0.527	INTRON Ubx
3R	26354617	3R_26354617_SNP [dm3] 3R_30528895_SNP [dm6]	A	C	5.516e^-5	0.527	DOWNSTREAM CR45552 INTRON CR45552
2L	2812390	2L_2812390_SNP [dm3] 2L_2812390_SNP [dm6]	A	C	5.541e^-5	0.527	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26383228	3R_26383228_SNP [dm3] 3R_30557506_SNP [dm6]	C	G	5.575e^-5	0.527	INTRON tmod & 1 other	TF binding site BDTNP1_TFBS_twi
2R	13902262	2R_13902262_INS [dm3] 2R_18014757_INS [dm6]	T	TT	5.594e^-5	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14123954	3R_14123954_SNP [dm3] 3R_18298232_SNP [dm6]	T	A	5.619e^-5	0.527	UTR_5_PRIME l_3_05822 UPSTREAM Dlc90F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8004845	2R_8004845_SNP [dm3] 2R_12117340_SNP [dm6]	G	A	5.649e^-5	0.527	SYNONYMOUS_CODING jeb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11477028	3L_11477028_SNP [dm3] 3L_11483928_SNP [dm6]	C	A	5.686e^-5	0.527	INTERGENIC
3R	25516339	3R_25516339_SNP [dm3] 3R_29690617_SNP [dm6]	A	C	5.695e^-5	0.527	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	20713465	3R_20713465_SNP [dm3] 3R_24887743_SNP [dm6]	T	C	5.830e^-5	0.527	INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7904286	3L_7904286_SNP [dm3] 3L_7911186_SNP [dm6]	C	A	5.852e^-5	0.527	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8390200	3L_8390200_SNP [dm3] 3L_8397100_SNP [dm6]	G	A	5.871e^-5	0.527	UPSTREAM CG7120 INTRON CG7120	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9914683	2R_9914683_SNP [dm3] 2R_14027178_SNP [dm6]	A	T	5.881e^-5	0.527	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16452739	2R_16452739_DEL [dm3] 2R_20565234_DEL [dm6]	AA	A	5.935e^-5	0.527	INTRON qsm
3R	14518373	3R_14518373_SNP [dm3] 3R_18692651_SNP [dm6]	C	T	5.946e^-5	0.527	SYNONYMOUS_CODING Muc91C DOWNSTREAM CG14300
2L	14251498	2L_14251498_SNP [dm3] 2L_14251498_SNP [dm6]	T	A	5.967e^-5	0.527	INTERGENIC
3R	9658331	3R_9658331_SNP [dm3] 3R_13832609_SNP [dm6]	A	G	6.026e^-5	0.527	DOWNSTREAM Nsf2 INTERGENIC
2L	2812416	2L_2812416_SNP [dm3] 2L_2812416_SNP [dm6]	T	A	6.027e^-5	0.527	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8237797	3L_8237797_DEL [dm3] 3L_8244697_DEL [dm6]	ATGCCAGGGAAA...	A	6.079e^-5	0.527	INTRON Dscam4
X	4641893	X_4641893_SNP [dm3] X_4747860_SNP [dm6]	C	G	6.103e^-5	0.527	INTERGENIC
3R	18368777	3R_18368777_SNP [dm3] 3R_22543055_SNP [dm6]	T	A	6.122e^-5	0.527	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
3L	9662566	3L_9662566_SNP [dm3] 3L_9669466_SNP [dm6]	A	G	6.131e^-5	0.527	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
3R	6823768	3R_6823768_SNP [dm3] 3R_10998046_SNP [dm6]	C	G	6.173e^-5	0.527	INTRON CG34114
3R	21330762	3R_21330762_SNP [dm3] 3R_25505040_SNP [dm6]	A	T	6.209e^-5	0.527	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7388384	3L_7388384_SNP [dm3] 3L_7395284_SNP [dm6]	T	C	6.221e^-5	0.527	INTRON CG8563
2L	3574750	2L_3574750_SNP [dm3] 2L_3574750_SNP [dm6]	C	G	6.239e^-5	0.527	UPSTREAM CR43822 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26351921	3R_26351921_SNP [dm3] 3R_30526199_SNP [dm6]	A	G	6.273e^-5	0.527	INTRON jdp
3L	11457448	3L_11457448_SNP [dm3] 3L_11464348_SNP [dm6]	C	T	6.296e^-5	0.527	SYNONYMOUS_CODING CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15312292	X_15312292_SNP [dm3] X_15418259_SNP [dm6]	A	C	6.316e^-5	0.527	INTRON Cngl
3L	2807207	3L_2807207_SNP [dm3] 3L_2807207_SNP [dm6]	C	T	6.319e^-5	0.527	INTRON CG43444
3L	5256041	3L_5256041_SNP [dm3] 3L_5262941_SNP [dm6]	G	A	6.338e^-5	0.527	INTRON shep
X	3898610	X_3898610_INS [dm3] X_4004577_INS [dm6]	T	TAAAAAATATGTGCT...	6.345e^-5	0.527	INTERGENIC
3L	14367004	3L_14367004_SNP [dm3] 3L_14373904_SNP [dm6]	C	T	6.377e^-5	0.527	INTERGENIC
3R	5145789	3R_5145789_SNP [dm3] 3R_9320067_SNP [dm6]	G	A	6.400e^-5	0.527	INTRON CG8861
3L	8237821	3L_8237821_SNP [dm3] 3L_8244721_SNP [dm6]	G	A	6.416e^-5	0.527	INTRON Dscam4
2L	7094477	2L_7094477_SNP [dm3] 2L_7094477_SNP [dm6]	A	T	6.416e^-5	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11378919	2R_11378919_SNP [dm3] 2R_15491414_SNP [dm6]	C	A	6.440e^-5	0.527	INTRON CG12964
X	610916	X_610916_SNP [dm3] X_716883_SNP [dm6]	A	T	6.509e^-5	0.527	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17604707	2R_17604707_SNP [dm3] 2R_21717202_SNP [dm6]	G	A	6.523e^-5	0.527	UTR_3_PRIME Tango11 UPSTREAM CG30398 DOWNSTREAM HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	2812398	2L_2812398_SNP [dm3] 2L_2812398_SNP [dm6]	A	C	6.524e^-5	0.527	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	2812393	2L_2812393_DEL [dm3] 2L_2812393_DEL [dm6]	TG	T	6.553e^-5	0.527	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	14942077	3L_14942077_SNP [dm3] 3L_14948977_SNP [dm6]	C	A	6.577e^-5	0.527	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9237172	2L_9237172_SNP [dm3] 2L_9237172_SNP [dm6]	G	A	6.579e^-5	0.527	UPSTREAM tRNA:CR31885 INTRON tai
3L	1862051	3L_1862051_SNP [dm3] 3L_1862051_SNP [dm6]	G	A	6.597e^-5	0.527	START_GAINED R UTR_5_PRIME R UPSTREAM R DOWNSTREAM HBS1 INTRON R	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26351945	3R_26351945_SNP [dm3] 3R_30526223_SNP [dm6]	T	A	6.664e^-5	0.528	INTRON jdp
2L	12553329	2L_12553329_SNP [dm3] 2L_12553329_SNP [dm6]	C	A	6.671e^-5	0.528	INTERGENIC
3L	6450496	3L_6450496_SNP [dm3] 3L_6457396_SNP [dm6]	A	C	6.773e^-5	0.533	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20782420	3R_20782420_SNP [dm3] 3R_24956698_SNP [dm6]	T	C	6.871e^-5	0.533	INTERGENIC
3L	9662735	3L_9662735_SNP [dm3] 3L_9669635_SNP [dm6]	G	A	6.876e^-5	0.533	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
2L	11829788	2L_11829788_SNP [dm3] 2L_11829788_SNP [dm6]	C	T	6.877e^-5	0.533	UPSTREAM esc INTRON Pde1c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	8768487	X_8768487_SNP [dm3] X_8874454_SNP [dm6]	C	T	6.879e^-5	0.533	INTRON Moe	TF binding site mE1_TFBS_chinmo
3R	18017935	3R_18017935_SNP [dm3] 3R_22192213_SNP [dm6]	C	T	7.004e^-5	0.539	INTRON SKIP
X	7574892	X_7574892_SNP [dm3] X_7680859_SNP [dm6]	T	C	7.039e^-5	0.539	UPSTREAM CR45666 DOWNSTREAM CR45665 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26352848	3R_26352848_SNP [dm3] 3R_30527126_SNP [dm6]	G	C	7.041e^-5	0.539	UPSTREAM jdp INTERGENIC
3L	968092	3L_968092_SNP [dm3] 3L_968092_SNP [dm6]	C	T	7.133e^-5	0.542	INTRON Glut1
3L	9662741	3L_9662741_SNP [dm3] 3L_9669641_SNP [dm6]	A	G	7.152e^-5	0.542	SPLICE_SITE_REGION fry INTRON fry	TF binding site mE1_TFBS_cad
3R	14013875	3R_14013875_SNP [dm3] 3R_18188153_SNP [dm6]	A	G	7.171e^-5	0.542	SYNONYMOUS_CODING CG12321 UPSTREAM MED17 DOWNSTREAM Arp5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	6698534	3L_6698534_SNP [dm3] 3L_6705434_SNP [dm6]	T	A	7.270e^-5	0.543	UTR_5_PRIME CG8519
2L	2812391	2L_2812391_SNP [dm3] 2L_2812391_SNP [dm6]	T	A	7.297e^-5	0.543	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	11326521	3L_11326521_SNP [dm3] 3L_11333421_SNP [dm6]	C	G	7.420e^-5	0.543	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9237120	2L_9237120_INS [dm3] 2L_9237120_INS [dm6]	C	CCA	7.434e^-5	0.543	UPSTREAM tRNA:CR31885 INTRON tai
2L	14433889	2L_14433889_SNP [dm3] 2L_14433889_SNP [dm6]	C	T	7.435e^-5	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	15312245	X_15312245_SNP [dm3] X_15418212_SNP [dm6]	A	C	7.460e^-5	0.543	INTRON Cngl
2R	15385321	2R_15385321_SNP [dm3] 2R_19497816_SNP [dm6]	A	G	7.495e^-5	0.543	SYNONYMOUS_CODING CG15120 UPSTREAM hpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4847184	2L_4847184_SNP [dm3] 2L_4847184_SNP [dm6]	T	C	7.508e^-5	0.543	UTR_5_PRIME mxt UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2610100	3L_2610100_SNP [dm3] 3L_2610100_SNP [dm6]	G	A	7.580e^-5	0.543	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_chinmo
3R	13592140	3R_13592140_SNP [dm3] 3R_17766418_SNP [dm6]	G	A	7.584e^-5	0.543	INTERGENIC
3L	13483522	3L_13483522_SNP [dm3] 3L_13490422_SNP [dm6]	A	C	7.647e^-5	0.543	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	18525930	3R_18525930_SNP [dm3] 3R_22700208_SNP [dm6]	A	G	7.698e^-5	0.543	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
2L	7638263	2L_7638263_SNP [dm3] 2L_7638263_SNP [dm6]	C	A	7.747e^-5	0.543	DOWNSTREAM CR44800 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	15300064	X_15300064_INS [dm3] X_15406031_INS [dm6]	G	GTGCACGATG	7.755e^-5	0.543	UTR_3_PRIME Cngl INTRON Cngl
3R	8570463	3R_8570463_DEL [dm3] 3R_12744741_DEL [dm6]	AA	A	7.765e^-5	0.543	INTERGENIC
3R	25560271	3R_25560271_SNP [dm3] 3R_29734549_SNP [dm6]	T	A	7.776e^-5	0.543	UTR_3_PRIME Kul DOWNSTREAM CG7601
2L	7086501	2L_7086501_SNP [dm3] 2L_7086501_SNP [dm6]	C	T	7.790e^-5	0.543	INTERGENIC
2R	5392500	2R_5392500_SNP [dm3] 2R_9504995_SNP [dm6]	C	T	7.796e^-5	0.543	INTRON brp
2R	4137237	2R_4137237_INS [dm3] 2R_8249732_INS [dm6]	A	AACTTTTTCAAGAATA...	7.800e^-5	0.543	UPSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
X	736251	X_736251_SNP [dm3] X_842218_SNP [dm6]	A	T	7.808e^-5	0.543	INTRON CG43867
2L	14265988	2L_14265988_SNP [dm3] 2L_14265988_SNP [dm6]	A	G	7.922e^-5	0.543	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	20782394	3R_20782394_SNP [dm3] 3R_24956672_SNP [dm6]	C	A	7.962e^-5	0.543	INTERGENIC
3L	14942674	3L_14942674_SNP [dm3] 3L_14949574_SNP [dm6]	T	A	7.978e^-5	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7052208	2L_7052208_SNP [dm3] 2L_7052208_SNP [dm6]	A	G	7.985e^-5	0.543	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4156632	X_4156632_SNP [dm3] X_4262599_SNP [dm6]	C	T	7.994e^-5	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22412773	3R_22412773_SNP [dm3] 3R_26587051_SNP [dm6]	C	A	8.069e^-5	0.543	UTR_3_PRIME scrib INTRON scrib
3R	13592561	3R_13592561_SNP [dm3] 3R_17766839_SNP [dm6]	T	A	8.125e^-5	0.543	INTERGENIC
3R	11699109	3R_11699109_DEL [dm3] 3R_15873387_DEL [dm6]	TT	T	8.146e^-5	0.543	INTRON CG31183
X	8813115	X_8813115_INS [dm3] X_8919082_INS [dm6]	T	TCTCTTTAT	8.163e^-5	0.543	DOWNSTREAM CR44111 INTRON rdgA
3R	18623592	3R_18623592_SNP [dm3] 3R_22797870_SNP [dm6]	A	T	8.189e^-5	0.543	INTERGENIC
3L	5644856	3L_5644856_SNP [dm3] 3L_5651756_SNP [dm6]	T	C	8.196e^-5	0.543	UTR_3_PRIME Blimp-1
2L	7029461	2L_7029461_SNP [dm3] 2L_7029461_SNP [dm6]	C	G	8.208e^-5	0.543	DOWNSTREAM CG3476 INTERGENIC
X	796633	X_796633_SNP [dm3] X_902600_SNP [dm6]	A	T	8.242e^-5	0.543	INTRON CG43867
3R	13061112	3R_13061112_SNP [dm3] 3R_17235390_SNP [dm6]	G	A	8.244e^-5	0.543	INTRON beat-IIb
2L	5939874	2L_5939874_SNP [dm3] 2L_5939874_SNP [dm6]	T	C	8.249e^-5	0.543	UPSTREAM CR45288 DOWNSTREAM dsf INTERGENIC
3R	15080570	3R_15080570_SNP [dm3] 3R_19254848_SNP [dm6]	C	T	8.272e^-5	0.543	INTERGENIC
3L	18379099	3L_18379099_SNP [dm3] 3L_18385999_SNP [dm6]	A	G	8.338e^-5	0.543	INTERGENIC
X	15312264	X_15312264_SNP [dm3] X_15418231_SNP [dm6]	G	A	8.358e^-5	0.543	INTRON Cngl
3R	7997583	3R_7997583_SNP [dm3] 3R_12171861_SNP [dm6]	C	A	8.378e^-5	0.543	INTERGENIC
3L	6011677	3L_6011677_SNP [dm3] 3L_6018577_SNP [dm6]	C	T	8.427e^-5	0.543	INTRON PVRAP
3L	8195016	3L_8195016_SNP [dm3] 3L_8201916_SNP [dm6]	C	A	8.436e^-5	0.543	SYNONYMOUS_CODING CG7366 UPSTREAM CG13679	TF binding site mE1_TFBS_cad
X	15312238	X_15312238_SNP [dm3] X_15418205_SNP [dm6]	T	C	8.446e^-5	0.543	INTRON Cngl
2R	8937079	2R_8937079_SNP [dm3] 2R_13049574_SNP [dm6]	G	A	8.448e^-5	0.543	SYNONYMOUS_CODING CG13324
X	3739505	X_3739505_SNP [dm3] X_3845472_SNP [dm6]	G	T	8.556e^-5	0.543	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16915733	3L_16915733_SNP [dm3] 3L_16922633_SNP [dm6]	T	G	8.559e^-5	0.543	UPSTREAM CG13028 DOWNSTREAM Lmpt INTERGENIC
3R	10410329	3R_10410329_SNP [dm3] 3R_14584607_SNP [dm6]	A	T	8.564e^-5	0.543	INTRON stumps
2R	11717940	2R_11717940_SNP [dm3] 2R_15830435_SNP [dm6]	A	G	8.589e^-5	0.543	SYNONYMOUS_CODING Poxn INTRON tun	regulatory region REDfly_CRMs
X	14129739	X_14129739_SNP [dm3] X_14235706_SNP [dm6]	C	A	8.597e^-5	0.543	NON_SYNONYMOUS_CODING Fbxl4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	20561837	X_20561837_SNP [dm3] X_20690810_SNP [dm6]	G	C	8.613e^-5	0.543	UTR_5_PRIME run UPSTREAM CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	2812861	2L_2812861_SNP [dm3] 2L_2812861_SNP [dm6]	T	C	8.659e^-5	0.543	SYNONYMOUS_CODING CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3L	18379814	3L_18379814_SNP [dm3] 3L_18386714_SNP [dm6]	G	A	8.661e^-5	0.543	INTERGENIC
2L	20352594	2L_20352594_SNP [dm3] 2L_20352594_SNP [dm6]	T	C	8.725e^-5	0.546	UPSTREAM snoRNA:Me28S-A3365 INTRON RtGEF
3R	18405628	3R_18405628_SNP [dm3] 3R_22579906_SNP [dm6]	C	A	8.768e^-5	0.546	UTR_3_PRIME CG33110 UPSTREAM CSN6
X	16264245	X_16264245_SNP [dm3] X_16370212_SNP [dm6]	C	T	8.880e^-5	0.551	UTR_3_PRIME nonA INTRON nonA
2L	12289625	2L_12289625_SNP [dm3] 2L_12289625_SNP [dm6]	A	G	8.893e^-5	0.551	INTRON aret
3L	18378412	3L_18378412_SNP [dm3] 3L_18385312_SNP [dm6]	A	T	8.949e^-5	0.552	INTERGENIC
3L	4355139	3L_4355139_DEL [dm3] 3L_4355139_DEL [dm6]	AA	A	9.103e^-5	0.556	INTRON Cip4
3R	14861736	3R_14861736_SNP [dm3] 3R_19036014_SNP [dm6]	G	T	9.119e^-5	0.556	INTRON CG6026	TF binding site mE1_TFBS_inv
3R	26353105	3R_26353105_SNP [dm3] 3R_30527383_SNP [dm6]	C	T	9.136e^-5	0.556	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3L	6832897	3L_6832897_SNP [dm3] 3L_6839797_SNP [dm6]	C	A	9.214e^-5	0.556	INTERGENIC	TF binding site mE1_TFBS_Kr mE1_TFBS_sens
2L	14251537	2L_14251537_SNP [dm3] 2L_14251537_SNP [dm6]	A	G	9.254e^-5	0.556	INTERGENIC
2L	14135395	2L_14135395_SNP [dm3] 2L_14135395_SNP [dm6]	A	C	9.263e^-5	0.556	INTRON CG17341
X	8429388	X_8429388_SNP [dm3] X_8535355_SNP [dm6]	G	A	9.274e^-5	0.556	INTRON Nrg
3R	20782421	3R_20782421_SNP [dm3] 3R_24956699_SNP [dm6]	A	C	9.286e^-5	0.556	INTERGENIC
2L	5943287	2L_5943287_SNP [dm3] 2L_5943287_SNP [dm6]	G	C	9.299e^-5	0.556	START_GAINED Sfp26Ad UTR_5_PRIME Sfp26Ad UPSTREAM Gpdh & 1 other DOWNSTREAM CR45289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	20356798	2L_20356798_SNP [dm3] 2L_20356798_SNP [dm6]	T	G	9.421e^-5	0.556	SYNONYMOUS_CODING RtGEF	TF binding site mE1_TFBS_cad
3R	19001360	3R_19001360_SNP [dm3] 3R_23175638_SNP [dm6]	T	A	9.424e^-5	0.556	INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18392932	3R_18392932_SNP [dm3] 3R_22567210_SNP [dm6]	G	A	9.431e^-5	0.556	INTERGENIC
X	15294627	X_15294627_SNP [dm3] X_15400594_SNP [dm6]	T	C	9.595e^-5	0.556	INTRON Cngl
3R	26354577	3R_26354577_INS [dm3] 3R_30528855_INS [dm6]	AA	CCATATGTT	9.626e^-5	0.556	DOWNSTREAM CR45552 INTRON CR45552
3L	18378542	3L_18378542_SNP [dm3] 3L_18385442_SNP [dm6]	A	C	9.635e^-5	0.556	INTERGENIC
2L	12554364	2L_12554364_SNP [dm3] 2L_12554364_SNP [dm6]	A	T	9.637e^-5	0.556	INTERGENIC
3R	13593005	3R_13593005_SNP [dm3] 3R_17767283_SNP [dm6]	G	T	9.666e^-5	0.556	DOWNSTREAM CG43102 INTERGENIC
2L	5943278	2L_5943278_SNP [dm3] 2L_5943278_SNP [dm6]	C	T	9.672e^-5	0.556	START_GAINED Sfp26Ad UTR_5_PRIME Sfp26Ad UPSTREAM Gpdh DOWNSTREAM CR45289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	8540649	3R_8540649_SNP [dm3] 3R_12714927_SNP [dm6]	G	C	9.756e^-5	0.556	NON_SYNONYMOUS_CODING Men	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5077138	X_5077138_SNP [dm3] X_5183105_SNP [dm6]	T	C	9.761e^-5	0.556	UPSTREAM CG5062 INTRON rg & 1 other
3L	20935098	3L_20935098_SNP [dm3] 3L_20941998_SNP [dm6]	T	C	9.828e^-5	0.556	INTRON fng
X	15312260	X_15312260_SNP [dm3] X_15418227_SNP [dm6]	A	G	9.831e^-5	0.556	INTRON Cngl
2L	15411381	2L_15411381_SNP [dm3] 2L_15411381_SNP [dm6]	G	A	9.856e^-5	0.556	INTERGENIC
2L	2812399	2L_2812399_SNP [dm3] 2L_2812399_SNP [dm6]	A	G	9.875e^-5	0.556	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9181290	3L_9181290_SNP [dm3] 3L_9188190_SNP [dm6]	A	G	9.906e^-5	0.556	INTERGENIC
3L	18379792	3L_18379792_SNP [dm3] 3L_18386692_SNP [dm6]	A	G	9.935e^-5	0.556	INTERGENIC
X	9634200	X_9634200_SNP [dm3] X_9740167_SNP [dm6]	C	T	9.962e^-5	0.556	INTRON Sp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16915659	3L_16915659_SNP [dm3] 3L_16922559_SNP [dm6]	G	A	1.000e^-4	0.556	UPSTREAM CG13028 DOWNSTREAM Lmpt INTERGENIC
2L	9237049	2L_9237049_SNP [dm3] 2L_9237049_SNP [dm6]	T	A	1.003e^-4	0.556	UPSTREAM tRNA:CR31885 INTRON tai
3L	14833303	3L_14833303_SNP [dm3] 3L_14840203_SNP [dm6]	C	T	1.005e^-4	0.556	INTRON CG17839
2L	3574756	2L_3574756_SNP [dm3] 2L_3574756_SNP [dm6]	T	A	1.008e^-4	0.556	UPSTREAM CR43822 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12279548	3L_12279548_SNP [dm3] 3L_12286448_SNP [dm6]	T	A	1.018e^-4	0.556	INTERGENIC
3L	7829061	3L_7829061_SNP [dm3] 3L_7835961_SNP [dm6]	A	G	1.018e^-4	0.556	INTRON Pdp1	regulatory region REDfly_CRMs
3L	12828846	3L_12828846_SNP [dm3] 3L_12835746_SNP [dm6]	T	C	1.019e^-4	0.556	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	15294622	X_15294622_SNP [dm3] X_15400589_SNP [dm6]	C	A	1.023e^-4	0.556	INTRON Cngl
X	15294628	X_15294628_SNP [dm3] X_15400595_SNP [dm6]	A	G	1.023e^-4	0.556	INTRON Cngl
3R	9658333	3R_9658333_SNP [dm3] 3R_13832611_SNP [dm6]	G	A	1.028e^-4	0.556	DOWNSTREAM Nsf2 INTERGENIC
2L	3574749	2L_3574749_SNP [dm3] 2L_3574749_SNP [dm6]	A	T	1.029e^-4	0.556	UPSTREAM CR43822 INTERGENIC	TF binding site mE1_TFBS_cad
3L	5407639	3L_5407639_SNP [dm3] 3L_5414539_SNP [dm6]	C	T	1.030e^-4	0.556	INTERGENIC
2L	6533272	2L_6533272_SNP [dm3] 2L_6533272_SNP [dm6]	A	T	1.031e^-4	0.556	INTRON eya
2R	15402573	2R_15402573_SNP [dm3] 2R_19515068_SNP [dm6]	C	T	1.034e^-4	0.556	INTERGENIC
3L	5433104	3L_5433104_SNP [dm3] 3L_5440004_SNP [dm6]	G	A	1.041e^-4	0.556	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
3L	18379812	3L_18379812_SNP [dm3] 3L_18386712_SNP [dm6]	G	A	1.042e^-4	0.556	INTERGENIC
3R	14541585	3R_14541585_SNP [dm3] 3R_18715863_SNP [dm6]	A	T	1.045e^-4	0.556	UTR_3_PRIME VAChT INTRON Cha	TF binding site mE1_TFBS_kn
3R	22412764	3R_22412764_SNP [dm3] 3R_26587042_SNP [dm6]	T	A	1.046e^-4	0.556	UTR_3_PRIME scrib INTRON scrib
2L	7055775	2L_7055775_SNP [dm3] 2L_7055775_SNP [dm6]	T	C	1.049e^-4	0.556	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18447177	3R_18447177_SNP [dm3] 3R_22621455_SNP [dm6]	G	A	1.053e^-4	0.556	SYNONYMOUS_CODING loco	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17588483	3L_17588483_SNP [dm3] 3L_17595383_SNP [dm6]	A	T	1.054e^-4	0.556	INTRON Eip74EF
X	4144310	X_4144310_SNP [dm3] X_4250277_SNP [dm6]	T	A	1.061e^-4	0.556	INTERGENIC
X	8788913	X_8788913_SNP [dm3] X_8894880_SNP [dm6]	G	A	1.062e^-4	0.556	UPSTREAM Moe INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
X	19124383	X_19124383_SNP [dm3] X_19230350_SNP [dm6]	G	A	1.064e^-4	0.556	INTRON CG7884
2L	18811826	2L_18811826_SNP [dm3] 2L_18811826_SNP [dm6]	C	T	1.064e^-4	0.556	UPSTREAM CG10570 & 3 others INTERGENIC
2L	19699577	2L_19699577_SNP [dm3] 2L_19699577_SNP [dm6]	T	C	1.066e^-4	0.556	UTR_3_PRIME scw DOWNSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20749013	2L_20749013_SNP [dm3] 2L_20749013_SNP [dm6]	G	A	1.068e^-4	0.556	UTR_3_PRIME Fs_2_Ket INTRON Fs_2_Ket
X	607256	X_607256_SNP [dm3] X_713223_SNP [dm6]	G	A	1.068e^-4	0.556	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9799397	2R_9799397_SNP [dm3] 2R_13911892_SNP [dm6]	C	A	1.069e^-4	0.556	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5937465	2L_5937465_SNP [dm3] 2L_5937465_SNP [dm6]	T	C	1.072e^-4	0.556	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15054799	3R_15054799_SNP [dm3] 3R_19229077_SNP [dm6]	G	A	1.073e^-4	0.556	SYNONYMOUS_CODING CG5250 UPSTREAM CG11703 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12388193	3L_12388193_SNP [dm3] 3L_12395093_SNP [dm6]	C	T	1.081e^-4	0.559	SYNONYMOUS_CODING CG32104	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22412747	3R_22412747_SNP [dm3] 3R_26587025_SNP [dm6]	G	A	1.085e^-4	0.559	UTR_3_PRIME scrib INTRON scrib
3R	18375084	3R_18375084_SNP [dm3] 3R_22549362_SNP [dm6]	G	A	1.094e^-4	0.56	DOWNSTREAM CR44062 INTERGENIC
X	5889656	X_5889656_SNP [dm3] X_5995623_SNP [dm6]	C	A	1.097e^-4	0.56	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20768293	2L_20768293_SNP [dm3] 2L_20768293_SNP [dm6]	A	G	1.108e^-4	0.56	DOWNSTREAM dia INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9799387	2R_9799387_SNP [dm3] 2R_13911882_SNP [dm6]	C	A	1.110e^-4	0.56	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	14135394	2L_14135394_SNP [dm3] 2L_14135394_SNP [dm6]	C	G	1.110e^-4	0.56	INTRON CG17341
3L	11891420	3L_11891420_SNP [dm3] 3L_11898320_SNP [dm6]	G	C	1.112e^-4	0.56	UPSTREAM CR43624 INTRON CG44837
3L	21284710	3L_21284710_SNP [dm3] 3L_21291610_SNP [dm6]	G	T	1.114e^-4	0.56	DOWNSTREAM Cpr78Ca INTERGENIC
X	3157672	X_3157672_SNP [dm3] X_3263639_SNP [dm6]	C	T	1.115e^-4	0.56	INTRON dnc
2L	14135371	2L_14135371_SNP [dm3] 2L_14135371_SNP [dm6]	G	A	1.119e^-4	0.56	INTRON CG17341
2L	14135420	2L_14135420_SNP [dm3] 2L_14135420_SNP [dm6]	C	T	1.119e^-4	0.56	INTRON CG17341
X	8790070	X_8790070_SNP [dm3] X_8896037_SNP [dm6]	T	G	1.120e^-4	0.56	INTRON Moe	TF binding site BDTNP1_TFBS_dl
X	1034292	X_1034292_SNP [dm3] X_1140259_SNP [dm6]	A	G	1.126e^-4	0.561	INTERGENIC
2L	2287667	2L_2287667_SNP [dm3] 2L_2287667_SNP [dm6]	G	A	1.127e^-4	0.561	UPSTREAM CG31681 DOWNSTREAM CG17237 INTRON CG42658
2R	13902265	2R_13902265_SNP [dm3] 2R_18014760_SNP [dm6]	G	A	1.130e^-4	0.561	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13392224	3L_13392224_SNP [dm3] 3L_13399124_SNP [dm6]	G	T	1.141e^-4	0.565	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8533113	X_8533113_SNP [dm3] X_8639080_SNP [dm6]	A	G	1.152e^-4	0.565	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2812403	2L_2812403_SNP [dm3] 2L_2812403_SNP [dm6]	T	A	1.153e^-4	0.565	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8191425	3R_8191425_SNP [dm3] 3R_12365703_SNP [dm6]	C	A	1.154e^-4	0.565	UTR_5_PRIME GstD10 DOWNSTREAM GstD9
2R	13902260	2R_13902260_SNP [dm3] 2R_18014755_SNP [dm6]	C	A	1.158e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	15312240	X_15312240_SNP [dm3] X_15418207_SNP [dm6]	G	A	1.164e^-4	0.565	INTRON Cngl
X	15312249	X_15312249_SNP [dm3] X_15418216_SNP [dm6]	A	T	1.164e^-4	0.565	INTRON Cngl
X	15138489	X_15138489_SNP [dm3] X_15244456_SNP [dm6]	T	G	1.170e^-4	0.565	NON_SYNONYMOUS_CODING PPYR1
3L	3796251	3L_3796251_SNP [dm3] 3L_3796251_SNP [dm6]	T	C	1.178e^-4	0.565	INTRON CG32264
3L	6562987	3L_6562987_SNP [dm3] 3L_6569887_SNP [dm6]	G	C	1.180e^-4	0.565	INTRON CG18769 & 1 other
3R	6176080	3R_6176080_SNP [dm3] 3R_10350358_SNP [dm6]	G	A	1.181e^-4	0.565	UTR_5_PRIME jumu DOWNSTREAM CG31406	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12858859	3L_12858859_SNP [dm3] 3L_12865759_SNP [dm6]	C	T	1.185e^-4	0.565	INTERGENIC
3R	26352633	3R_26352633_DEL [dm3] 3R_30526911_DEL [dm6]	TTTTT	T	1.186e^-4	0.565	INTRON jdp
X	8533108	X_8533108_SNP [dm3] X_8639075_SNP [dm6]	G	A	1.189e^-4	0.565	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10980706	3L_10980706_SNP [dm3] 3L_10987606_SNP [dm6]	T	A	1.191e^-4	0.565	INTRON klu
2L	3312061	2L_3312061_SNP [dm3] 2L_3312061_SNP [dm6]	A	T	1.193e^-4	0.565	DOWNSTREAM CG15406 INTRON CG3277
X	20417381	X_20417381_DEL [dm3] X_20546354_DEL [dm6]	ATA	A	1.193e^-4	0.565	INTRON RunxB
3R	3613851	3R_3613851_SNP [dm3] 3R_7788129_SNP [dm6]	T	C	1.195e^-4	0.565	UPSTREAM CG18748 DOWNSTREAM CG18746 INTERGENIC
3R	7922950	3R_7922950_SNP [dm3] 3R_12097228_SNP [dm6]	T	A	1.196e^-4	0.565	UPSTREAM dpr17 INTRON dpr17
3R	1270504	3R_1270504_SNP [dm3] 3R_5444782_SNP [dm6]	C	G	1.198e^-4	0.565	INTRON CG14669
3L	8767299	3L_8767299_SNP [dm3] 3L_8774199_SNP [dm6]	G	A	1.210e^-4	0.568	INTRON Fhos	TF binding site mE1_TFBS_HSA
X	1060892	X_1060892_DEL [dm3] X_1166859_DEL [dm6]	ATTG	A	1.211e^-4	0.568	INTERGENIC
3L	1522978	3L_1522978_SNP [dm3] 3L_1522978_SNP [dm6]	C	A	1.216e^-4	0.568	UTR_3_PRIME Psa DOWNSTREAM CG12090	TF binding site mE1_TFBS_cad
3R	8539383	3R_8539383_SNP [dm3] 3R_12713661_SNP [dm6]	G	A	1.218e^-4	0.568	SYNONYMOUS_CODING Men	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5165381	3R_5165381_SNP [dm3] 3R_9339659_SNP [dm6]	C	T	1.220e^-4	0.568	UPSTREAM CG45050 EXON CR43301	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	21142517	3L_21142517_SNP [dm3] 3L_21149417_SNP [dm6]	T	A	1.233e^-4	0.568	INTRON Ac78C
3L	4589500	3L_4589500_SNP [dm3] 3L_4589500_SNP [dm6]	A	C	1.239e^-4	0.568	INTRON CG42540
3L	9666620	3L_9666620_SNP [dm3] 3L_9673520_SNP [dm6]	G	A	1.241e^-4	0.568	INTRON fry
X	5076314	X_5076314_SNP [dm3] X_5182281_SNP [dm6]	A	G	1.248e^-4	0.568	UTR_5_PRIME CG5062 INTRON rg & 1 other
3L	11298068	3L_11298068_SNP [dm3] 3L_11304968_SNP [dm6]	C	A	1.248e^-4	0.568	INTERGENIC
X	1034688	X_1034688_SNP [dm3] X_1140655_SNP [dm6]	C	T	1.249e^-4	0.568	INTERGENIC
X	14523262	X_14523262_SNP [dm3] X_14629229_SNP [dm6]	C	A	1.253e^-4	0.568	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5915986	3L_5915986_SNP [dm3] 3L_5922886_SNP [dm6]	C	T	1.253e^-4	0.568	SYNONYMOUS_CODING CG32407 UPSTREAM Vap-33B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4018841	3L_4018841_SNP [dm3] 3L_4018841_SNP [dm6]	A	T	1.254e^-4	0.568	UPSTREAM fd64A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18739713	X_18739713_SNP [dm3] X_18845680_SNP [dm6]	C	A	1.258e^-4	0.568	SYNONYMOUS_CODING CG34422 DOWNSTREAM CG7280	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7997597	3R_7997597_SNP [dm3] 3R_12171875_SNP [dm6]	C	T	1.260e^-4	0.568	INTERGENIC
2L	9236515	2L_9236515_SNP [dm3] 2L_9236515_SNP [dm6]	T	C	1.269e^-4	0.568	DOWNSTREAM tRNA:CR31885 INTRON tai
2L	14135381	2L_14135381_SNP [dm3] 2L_14135381_SNP [dm6]	T	C	1.271e^-4	0.568	INTRON CG17341
2L	3574769	2L_3574769_SNP [dm3] 2L_3574769_SNP [dm6]	G	T	1.274e^-4	0.568	UPSTREAM CR43822 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26352423	3R_26352423_SNP [dm3] 3R_30526701_SNP [dm6]	T	A	1.277e^-4	0.568	INTRON jdp
3L	2681217	3L_2681217_SNP [dm3] 3L_2681217_SNP [dm6]	A	C	1.279e^-4	0.568	INTRON Fife
3L	9666619	3L_9666619_SNP [dm3] 3L_9673519_SNP [dm6]	C	A	1.282e^-4	0.568	INTRON fry
3L	17545456	3L_17545456_DEL [dm3] 3L_17552356_DEL [dm6]	GAG	G	1.286e^-4	0.568	UTR_3_PRIME CycT DOWNSTREAM CycT
2L	9211231	2L_9211231_INS [dm3] 2L_9211231_INS [dm6]	A	AA	1.292e^-4	0.568	INTRON tai
3R	18752919	3R_18752919_SNP [dm3] 3R_22927197_SNP [dm6]	G	A	1.292e^-4	0.568	INTRON klg
3R	25517493	3R_25517493_SNP [dm3] 3R_29691771_SNP [dm6]	C	T	1.298e^-4	0.568	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12307187	3L_12307187_SNP [dm3] 3L_12314087_SNP [dm6]	C	T	1.299e^-4	0.568	INTERGENIC	regulatory region REDfly_CRMs
X	19124380	X_19124380_DEL [dm3] X_19230347_DEL [dm6]	AT	C	1.299e^-4	0.568	INTRON CG7884
2R	19204203	2R_19204203_SNP [dm3] 2R_23316680_SNP [dm6]	T	C	1.303e^-4	0.568	INTERGENIC
2R	16410662	2R_16410662_SNP [dm3] 2R_20523157_SNP [dm6]	A	C	1.306e^-4	0.568	INTERGENIC
3R	14390370	3R_14390370_SNP [dm3] 3R_18564648_SNP [dm6]	G	A	1.307e^-4	0.568	SYNONYMOUS_CODING CG43210 UTR_3_PRIME CG43194
2R	14655097	2R_14655097_SNP [dm3] 2R_18767592_SNP [dm6]	G	A	1.309e^-4	0.568	INTRON Mctp
2R	12460555	2R_12460555_SNP [dm3] 2R_16573050_SNP [dm6]	A	G	1.310e^-4	0.568	INTRON CG4927
2L	20358066	2L_20358066_SNP [dm3] 2L_20358066_SNP [dm6]	C	T	1.313e^-4	0.568	SYNONYMOUS_CODING RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	6533206	2L_6533206_INS [dm3] 2L_6533206_INS [dm6]	T	TC	1.315e^-4	0.568	INTRON eya
X	9297460	X_9297460_SNP [dm3] X_9403427_SNP [dm6]	C	G	1.316e^-4	0.568	INTRON mgl
3R	13592590	3R_13592590_SNP [dm3] 3R_17766868_SNP [dm6]	G	A	1.319e^-4	0.568	INTERGENIC
2L	12452948	2L_12452948_SNP [dm3] 2L_12452948_SNP [dm6]	G	A	1.320e^-4	0.568	UPSTREAM CR17024 DOWNSTREAM Oatp33Eb INTRON CG5418	TF binding site mE1_TFBS_cad
3R	26352773	3R_26352773_SNP [dm3] 3R_30527051_SNP [dm6]	T	A	1.331e^-4	0.57	UPSTREAM jdp INTERGENIC
X	15382688	X_15382688_DEL [dm3] X_15488655_DEL [dm6]	TCG	T	1.334e^-4	0.57	INTRON Gmap
2L	21106326	2L_21106326_SNP [dm3] 2L_21106326_SNP [dm6]	C	T	1.335e^-4	0.57	DOWNSTREAM CR44056 INTRON Nhe2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
2L	5937689	2L_5937689_SNP [dm3] 2L_5937689_SNP [dm6]	A	G	1.339e^-4	0.57	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18020853	3R_18020853_SNP [dm3] 3R_22195131_SNP [dm6]	C	T	1.347e^-4	0.57	INTRON SKIP EXON CR45224	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	2492845	2L_2492845_SNP [dm3] 2L_2492845_SNP [dm6]	G	A	1.349e^-4	0.57	UPSTREAM oaf & 1 other INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	862542	2L_862542_SNP [dm3] 2L_862542_SNP [dm6]	T	C	1.350e^-4	0.57	DOWNSTREAM CG13950 INTRON aru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15317686	X_15317686_SNP [dm3] X_15423653_SNP [dm6]	T	C	1.353e^-4	0.57	INTRON Cngl
3R	13592488	3R_13592488_INS [dm3] 3R_17766766_INS [dm6]	A	ATA	1.362e^-4	0.57	INTERGENIC
3R	8145924	3R_8145924_SNP [dm3] 3R_12320202_SNP [dm6]	T	C	1.362e^-4	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2L	7440370	2L_7440370_INS [dm3] 2L_7440370_INS [dm6]	T	TT	1.367e^-4	0.57	UPSTREAM CG5973 INTRON CG5973
3L	18380973	3L_18380973_SNP [dm3] 3L_18387873_SNP [dm6]	C	T	1.370e^-4	0.57	INTERGENIC
X	16509002	X_16509002_SNP [dm3] X_16614969_SNP [dm6]	T	G	1.376e^-4	0.57	DOWNSTREAM CG9782 & 1 other INTERGENIC
3L	18379469	3L_18379469_SNP [dm3] 3L_18386369_SNP [dm6]	G	A	1.379e^-4	0.57	INTERGENIC
2L	17813229	2L_17813229_SNP [dm3] 2L_17813229_SNP [dm6]	C	T	1.380e^-4	0.57	UPSTREAM CG42830 INTRON CadN2
2L	15402110	2L_15402110_SNP [dm3] 2L_15402110_SNP [dm6]	C	A	1.384e^-4	0.57	INTERGENIC
3L	7845429	3L_7845429_SNP [dm3] 3L_7852329_SNP [dm6]	T	C	1.385e^-4	0.57	INTRON Pdp1
2L	1602982	2L_1602982_SNP [dm3] 2L_1602982_SNP [dm6]	C	T	1.387e^-4	0.57	SYNONYMOUS_CODING haf INTRON CG31935
3R	20853794	3R_20853794_SNP [dm3] 3R_25028072_SNP [dm6]	G	A	1.387e^-4	0.57	INTRON Hr96
X	15311761	X_15311761_SNP [dm3] X_15417728_SNP [dm6]	C	G	1.388e^-4	0.57	INTRON Cngl
3L	11941985	3L_11941985_SNP [dm3] 3L_11948885_SNP [dm6]	C	T	1.388e^-4	0.57	SYNONYMOUS_CODING CG7252 UPSTREAM CG17826	TF binding site mE1_TFBS_cad
3L	8194825	3L_8194825_SNP [dm3] 3L_8201725_SNP [dm6]	G	T	1.393e^-4	0.57	NON_SYNONYMOUS_CODING CG7366	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21330403	3R_21330403_INS [dm3] 3R_25504681_INS [dm6]	T	TT	1.398e^-4	0.57	UPSTREAM CG5107 DOWNSTREAM CR45651 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15385295	2R_15385295_SNP [dm3] 2R_19497790_SNP [dm6]	C	A	1.401e^-4	0.57	UTR_5_PRIME CG15120 UPSTREAM hpo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18379713	3L_18379713_SNP [dm3] 3L_18386613_SNP [dm6]	C	T	1.404e^-4	0.57	INTERGENIC
3L	6439552	3L_6439552_DEL [dm3] 3L_6446452_DEL [dm6]	AA	A	1.404e^-4	0.57	INTRON CG42747
X	16872022	X_16872022_SNP [dm3] X_16977989_SNP [dm6]	G	C	1.406e^-4	0.57	INTRON CG45002
2R	19668551	2R_19668551_SNP [dm3] 2R_23781028_SNP [dm6]	A	G	1.416e^-4	0.573	INTRON CG9850
2L	1693273	2L_1693273_SNP [dm3] 2L_1693273_SNP [dm6]	T	G	1.424e^-4	0.574	INTRON chinmo
2L	14434801	2L_14434801_INS [dm3] 2L_14434801_INS [dm6]	T	TGTAT	1.441e^-4	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	866700	2L_866700_SNP [dm3] 2L_866700_SNP [dm6]	C	G	1.441e^-4	0.576	UPSTREAM aru INTRON aru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	13100990	3R_13100990_SNP [dm3] 3R_17275268_SNP [dm6]	A	C	1.448e^-4	0.576	INTERGENIC
X	10111981	X_10111981_SNP [dm3] X_10217948_SNP [dm6]	A	G	1.453e^-4	0.576	UTR_3_PRIME CG15308 UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
3L	9662729	3L_9662729_SNP [dm3] 3L_9669629_SNP [dm6]	T	C	1.455e^-4	0.576	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
2R	6542986	2R_6542986_SNP [dm3] 2R_10655481_SNP [dm6]	C	T	1.457e^-4	0.576	INTERGENIC
3R	25901068	3R_25901068_DEL [dm3] 3R_30075346_DEL [dm6]	GGCGAAGGATTCCCT...	G	1.459e^-4	0.576	INTRON sima
3L	7836441	3L_7836441_SNP [dm3] 3L_7843341_SNP [dm6]	G	A	1.462e^-4	0.576	INTRON Pdp1	regulatory region REDfly_CRMs
3R	5163966	3R_5163966_SNP [dm3] 3R_9338244_SNP [dm6]	T	C	1.466e^-4	0.576	DOWNSTREAM CG8121 EXON CR43301	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	5015343	3L_5015343_SNP [dm3] 3L_5015343_SNP [dm6]	G	T	1.468e^-4	0.576	INTRON Con
3L	17922394	3L_17922394_SNP [dm3] 3L_17929294_SNP [dm6]	A	G	1.469e^-4	0.576	INTERGENIC
3L	12388148	3L_12388148_SNP [dm3] 3L_12395048_SNP [dm6]	A	T	1.470e^-4	0.576	SYNONYMOUS_CODING CG32104	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	14251535	2L_14251535_SNP [dm3] 2L_14251535_SNP [dm6]	C	G	1.473e^-4	0.576	INTERGENIC
2L	7598867	2L_7598867_SNP [dm3] 2L_7598867_SNP [dm6]	G	A	1.473e^-4	0.576	INTERGENIC
2L	17904752	2L_17904752_SNP [dm3] 2L_17904752_SNP [dm6]	A	G	1.479e^-4	0.576	INTERGENIC
2R	4603187	2R_4603187_SNP [dm3] 2R_8715682_SNP [dm6]	A	G	1.484e^-4	0.576	DOWNSTREAM PGRP-SC1b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	10968922	X_10968922_SNP [dm3] X_11074889_SNP [dm6]	C	A	1.485e^-4	0.576	SYNONYMOUS_CODING sev	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5256014	3L_5256014_SNP [dm3] 3L_5262914_SNP [dm6]	T	C	1.488e^-4	0.576	INTRON shep
X	20351022	X_20351022_SNP [dm3] X_20479995_SNP [dm6]	G	T	1.489e^-4	0.576	INTRON RhoGAP19D
2R	15433623	2R_15433623_SNP [dm3] 2R_19546118_SNP [dm6]	C	T	1.495e^-4	0.576	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
X	7574886	X_7574886_SNP [dm3] X_7680853_SNP [dm6]	C	A	1.497e^-4	0.576	UPSTREAM CR45666 DOWNSTREAM CR45665 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	14510694	3R_14510694_SNP [dm3] 3R_18684972_SNP [dm6]	G	T	1.498e^-4	0.576	UTR_3_PRIME CG7708
2L	7949902	2L_7949902_SNP [dm3] 2L_7949902_SNP [dm6]	G	A	1.502e^-4	0.576	INTRON Snoo
2L	7949906	2L_7949906_SNP [dm3] 2L_7949906_SNP [dm6]	T	A	1.502e^-4	0.576	INTRON Snoo
X	15138304	X_15138304_SNP [dm3] X_15244271_SNP [dm6]	A	C	1.505e^-4	0.576	SYNONYMOUS_CODING PPYR1	TF binding site mE1_TFBS_HSA
X	733829	X_733829_SNP [dm3] X_839796_SNP [dm6]	T	A	1.511e^-4	0.577	INTRON CG43867
3L	8548898	3L_8548898_SNP [dm3] 3L_8555798_SNP [dm6]	A	G	1.512e^-4	0.577	UTR_5_PRIME rhea
3L	5203030	3L_5203030_INS [dm3] 3L_5209930_INS [dm6]	T	TTGATATTT	1.528e^-4	0.581	INTRON shep
2L	5937543	2L_5937543_SNP [dm3] 2L_5937543_SNP [dm6]	T	A	1.529e^-4	0.581	INTRON dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21421540	3L_21421540_SNP [dm3] 3L_21428440_SNP [dm6]	G	T	1.534e^-4	0.581	INTRON barc & 1 other
3R	9356933	3R_9356933_SNP [dm3] 3R_13531211_SNP [dm6]	A	G	1.537e^-4	0.581	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9424081	3R_9424081_INS [dm3] 3R_13598359_INS [dm6]	C	CGT	1.543e^-4	0.582	INTERGENIC
3R	21497293	3R_21497293_SNP [dm3] 3R_25671571_SNP [dm6]	C	T	1.548e^-4	0.583	INTRON Lgr3
3L	9692454	3L_9692454_SNP [dm3] 3L_9699354_SNP [dm6]	C	T	1.566e^-4	0.587	SYNONYMOUS_CODING UbcD4	TF binding site mE1_TFBS_cad
3L	13590898	3L_13590898_SNP [dm3] 3L_13597798_SNP [dm6]	A	G	1.567e^-4	0.587	INTRON bru-3
2L	9237128	2L_9237128_SNP [dm3] 2L_9237128_SNP [dm6]	T	C	1.568e^-4	0.587	UPSTREAM tRNA:CR31885 INTRON tai
3L	12374759	3L_12374759_SNP [dm3] 3L_12381659_SNP [dm6]	T	G	1.582e^-4	0.589	INTRON Ncc69	TF binding site mE1_TFBS_inv
2R	9793123	2R_9793123_SNP [dm3] 2R_13905618_SNP [dm6]	T	G	1.584e^-4	0.589	INTRON shot
3L	16109968	3L_16109968_INS [dm3] 3L_16116868_INS [dm6]	T	TGT	1.585e^-4	0.589	INTRON Taf4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12394335	2R_12394335_SNP [dm3] 2R_16506830_SNP [dm6]	C	T	1.590e^-4	0.589	INTRON Sema-2a
X	9436935	X_9436935_SNP [dm3] X_9542902_SNP [dm6]	G	A	1.593e^-4	0.589	INTRON CG32700
X	15289678	X_15289678_SNP [dm3] X_15395645_SNP [dm6]	C	T	1.595e^-4	0.589	INTRON Cngl	TF binding site mE1_TFBS_sbb
X	9436939	X_9436939_SNP [dm3] X_9542906_SNP [dm6]	C	T	1.597e^-4	0.589	INTRON CG32700
3R	25897835	3R_25897835_SNP [dm3] 3R_30072113_SNP [dm6]	G	T	1.598e^-4	0.589	INTRON sima
3L	6447651	3L_6447651_SNP [dm3] 3L_6454551_SNP [dm6]	T	A	1.600e^-4	0.589	INTRON CG42747
2R	19569893	2R_19569893_SNP [dm3] 2R_23682370_SNP [dm6]	C	G	1.608e^-4	0.589	SYNONYMOUS_CODING St1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12326116	3R_12326116_SNP [dm3] 3R_16500394_SNP [dm6]	G	A	1.609e^-4	0.589	INTRON decay
2R	12394334	2R_12394334_SNP [dm3] 2R_16506829_SNP [dm6]	T	C	1.615e^-4	0.589	INTRON Sema-2a
3R	14539890	3R_14539890_SNP [dm3] 3R_18714168_SNP [dm6]	G	A	1.615e^-4	0.589	SYNONYMOUS_CODING VAChT INTRON Cha
X	16509007	X_16509007_SNP [dm3] X_16614974_SNP [dm6]	T	C	1.621e^-4	0.59	DOWNSTREAM CG9782 & 1 other INTERGENIC
3R	13592128	3R_13592128_SNP [dm3] 3R_17766406_SNP [dm6]	T	G	1.625e^-4	0.59	INTERGENIC
2L	2477712	2L_2477712_SNP [dm3] 2L_2477712_SNP [dm6]	A	C	1.626e^-4	0.59	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
X	20417344	X_20417344_SNP [dm3] X_20546317_SNP [dm6]	A	G	1.629e^-4	0.59	INTRON RunxB
X	16053375	X_16053375_SNP [dm3] X_16159342_SNP [dm6]	G	T	1.648e^-4	0.594	INTERGENIC
3L	13099415	3L_13099415_SNP [dm3] 3L_13106315_SNP [dm6]	T	A	1.649e^-4	0.594	INTERGENIC
X	20198576	X_20198576_SNP [dm3] X_20327549_SNP [dm6]	G	A	1.653e^-4	0.594	UTR_5_PRIME CG1631 INTRON CG1504
X	3491025	X_3491025_SNP [dm3] X_3596992_SNP [dm6]	A	G	1.656e^-4	0.594	INTRON AstA-R1
3R	25549664	3R_25549664_SNP [dm3] 3R_29723942_SNP [dm6]	G	A	1.663e^-4	0.594	SYNONYMOUS_CODING Pcd DOWNSTREAM CG34296 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11229335	3R_11229335_SNP [dm3] 3R_15403613_SNP [dm6]	A	G	1.671e^-4	0.594	SYNONYMOUS_CODING CG6125
2L	10750120	2L_10750120_SNP [dm3] 2L_10750120_SNP [dm6]	G	T	1.672e^-4	0.594	INTRON CG17124
3L	6618825	3L_6618825_SNP [dm3] 3L_6625725_SNP [dm6]	C	T	1.676e^-4	0.594	INTRON GluRIA
2L	3312066	2L_3312066_INS [dm3] 2L_3312066_INS [dm6]	A	TTTTT	1.679e^-4	0.594	DOWNSTREAM CG15406 INTRON CG3277
2R	13668346	2R_13668346_SNP [dm3] 2R_17780841_SNP [dm6]	A	T	1.680e^-4	0.594	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_sens
3L	14833337	3L_14833337_DEL [dm3] 3L_14840237_DEL [dm6]	AA	A	1.685e^-4	0.594	INTRON CG17839
3L	11249512	3L_11249512_SNP [dm3] 3L_11256412_SNP [dm6]	T	G	1.687e^-4	0.594	DOWNSTREAM scyl INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8237879	3L_8237879_SNP [dm3] 3L_8244779_SNP [dm6]	C	T	1.689e^-4	0.594	INTRON Dscam4
3L	9662747	3L_9662747_SNP [dm3] 3L_9669647_SNP [dm6]	C	A	1.692e^-4	0.594	INTRON fry	TF binding site mE1_TFBS_cad
3L	5584653	3L_5584653_SNP [dm3] 3L_5591553_SNP [dm6]	G	A	1.698e^-4	0.594	SYNONYMOUS_CODING spo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16731464	2R_16731464_SNP [dm3] 2R_20843959_SNP [dm6]	A	T	1.698e^-4	0.594	INTERGENIC
3R	14337422	3R_14337422_SNP [dm3] 3R_18511700_SNP [dm6]	T	C	1.698e^-4	0.594	INTRON fru	TF binding site mE1_TFBS_HSA
2L	2812525	2L_2812525_SNP [dm3] 2L_2812525_SNP [dm6]	A	C	1.699e^-4	0.594	UTR_5_PRIME CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9708527	2R_9708527_SNP [dm3] 2R_13821022_SNP [dm6]	C	G	1.702e^-4	0.594	INTRON fl_2_d	TF binding site mE1_TFBS_sens
X	5543580	X_5543580_SNP [dm3] X_5649547_SNP [dm6]	A	G	1.705e^-4	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14942671	3L_14942671_SNP [dm3] 3L_14949571_SNP [dm6]	A	C	1.711e^-4	0.595	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18379970	3L_18379970_SNP [dm3] 3L_18386870_SNP [dm6]	A	T	1.712e^-4	0.595	INTERGENIC
2R	14930708	2R_14930708_SNP [dm3] 2R_19043203_SNP [dm6]	T	A	1.716e^-4	0.595	INTERGENIC
3R	24159649	3R_24159649_SNP [dm3] 3R_28333927_SNP [dm6]	C	T	1.724e^-4	0.596	NON_SYNONYMOUS_CODING larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3312064	2L_3312064_SNP [dm3] 2L_3312064_SNP [dm6]	T	A	1.726e^-4	0.596	DOWNSTREAM CG15406 INTRON CG3277
2R	19666674	2R_19666674_SNP [dm3] 2R_23779151_SNP [dm6]	T	C	1.731e^-4	0.596	INTRON CG9850
2R	17005832	2R_17005832_SNP [dm3] 2R_21118327_SNP [dm6]	G	A	1.741e^-4	0.596	UPSTREAM CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
X	10148492	X_10148492_SNP [dm3] X_10254459_SNP [dm6]	T	A	1.744e^-4	0.596	INTRON Hk
3R	14510863	3R_14510863_SNP [dm3] 3R_18685141_SNP [dm6]	A	T	1.747e^-4	0.596	UTR_3_PRIME CG7708
2L	14433833	2L_14433833_DEL [dm3] 2L_14433833_DEL [dm6]	ACAA	A	1.752e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
X	4562164	X_4562164_SNP [dm3] X_4668131_SNP [dm6]	A	G	1.755e^-4	0.596	SYNONYMOUS_CODING rap	TF binding site mE1_TFBS_chinmo
3R	25899607	3R_25899607_SNP [dm3] 3R_30073885_SNP [dm6]	G	T	1.757e^-4	0.596	INTRON sima
X	10893692	X_10893692_SNP [dm3] X_10999659_SNP [dm6]	C	T	1.758e^-4	0.596	INTRON CG42339
3R	26354616	3R_26354616_SNP [dm3] 3R_30528894_SNP [dm6]	C	T	1.759e^-4	0.596	DOWNSTREAM CR45552 INTRON CR45552
2L	17813225	2L_17813225_SNP [dm3] 2L_17813225_SNP [dm6]	T	A	1.764e^-4	0.596	UPSTREAM CG42830 INTRON CadN2
3L	6343627	3L_6343627_SNP [dm3] 3L_6350527_SNP [dm6]	G	A	1.767e^-4	0.596	NON_SYNONYMOUS_CODING Sfp65A INTRON CG13300	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11378796	2R_11378796_SNP [dm3] 2R_15491291_SNP [dm6]	G	A	1.769e^-4	0.596	INTRON CG12964
2R	6598496	2R_6598496_SNP [dm3] 2R_10710991_SNP [dm6]	C	T	1.771e^-4	0.596	SYNONYMOUS_CODING stan
2L	14549514	2L_14549514_DEL [dm3] 2L_14549514_DEL [dm6]	AGTGG	A	1.775e^-4	0.596	UPSTREAM CG4218 DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
2R	6598190	2R_6598190_SNP [dm3] 2R_10710685_SNP [dm6]	C	T	1.777e^-4	0.596	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_sens
X	20561847	X_20561847_SNP [dm3] X_20690820_SNP [dm6]	T	C	1.794e^-4	0.596	UTR_5_PRIME run UPSTREAM CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	6452820	3L_6452820_DEL [dm3] 3L_6459720_DEL [dm6]	GCGAG	G	1.798e^-4	0.596	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3R	15208296	3R_15208296_SNP [dm3] 3R_19382574_SNP [dm6]	A	T	1.804e^-4	0.596	INTRON Ino80
2R	4943560	2R_4943560_SNP [dm3] 2R_9056055_SNP [dm6]	C	A	1.805e^-4	0.596	INTRON CG13743	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19615081	3R_19615081_SNP [dm3] 3R_23789359_SNP [dm6]	C	A	1.807e^-4	0.596	INTRON mbc
2L	5446681	2L_5446681_SNP [dm3] 2L_5446681_SNP [dm6]	T	A	1.810e^-4	0.596	INTERGENIC
X	8789652	X_8789652_SNP [dm3] X_8895619_SNP [dm6]	C	G	1.811e^-4	0.596	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3L	3527131	3L_3527131_SNP [dm3] 3L_3527131_SNP [dm6]	G	A	1.813e^-4	0.596	INTRON Eip63E
3L	19338877	3L_19338877_SNP [dm3] 3L_19345777_SNP [dm6]	G	C	1.819e^-4	0.596	INTRON CG32206
2L	5937602	2L_5937602_SNP [dm3] 2L_5937602_SNP [dm6]	C	T	1.824e^-4	0.596	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18378578	3L_18378578_SNP [dm3] 3L_18385478_SNP [dm6]	A	C	1.826e^-4	0.596	INTERGENIC
2R	11717950	2R_11717950_SNP [dm3] 2R_15830445_SNP [dm6]	T	A	1.828e^-4	0.596	SYNONYMOUS_CODING Poxn INTRON tun	regulatory region REDfly_CRMs
3L	12115929	3L_12115929_SNP [dm3] 3L_12122829_SNP [dm6]	T	G	1.830e^-4	0.596	SPLICE_SITE_REGION yps INTRON yps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_chinmo
3L	13158237	3L_13158237_DEL [dm3] 3L_13165137_DEL [dm6]	TA	T	1.836e^-4	0.596	INTERGENIC
3R	26328430	3R_26328430_SNP [dm3] 3R_30502708_SNP [dm6]	T	G	1.836e^-4	0.596	SYNONYMOUS_CODING CG31371 DOWNSTREAM PH4alphaSG1
3L	12809246	3L_12809246_SNP [dm3] 3L_12816146_SNP [dm6]	T	A	1.837e^-4	0.596	INTRON CG42588
2R	14190520	2R_14190520_SNP [dm3] 2R_18303015_SNP [dm6]	T	A	1.841e^-4	0.596	UTR_3_PRIME CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12789640	3L_12789640_SNP [dm3] 3L_12796540_SNP [dm6]	G	A	1.842e^-4	0.596	DOWNSTREAM CG42709 INTRON Atg1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10682203	3R_10682203_SNP [dm3] 3R_14856481_SNP [dm6]	A	G	1.851e^-4	0.596	INTRON btsz
3L	3831171	3L_3831171_SNP [dm3] 3L_3831171_SNP [dm6]	G	A	1.851e^-4	0.596	INTRON enc
X	8790058	X_8790058_SNP [dm3] X_8896025_SNP [dm6]	T	G	1.853e^-4	0.596	INTRON Moe	TF binding site BDTNP1_TFBS_dl
2R	17005833	2R_17005833_SNP [dm3] 2R_21118328_SNP [dm6]	C	A	1.860e^-4	0.596	UPSTREAM CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
2L	12553296	2L_12553296_SNP [dm3] 2L_12553296_SNP [dm6]	A	C	1.861e^-4	0.596	INTERGENIC
2L	7598889	2L_7598889_SNP [dm3] 2L_7598889_SNP [dm6]	T	A	1.861e^-4	0.596	INTERGENIC
3L	5318918	3L_5318918_SNP [dm3] 3L_5325818_SNP [dm6]	A	G	1.867e^-4	0.596	INTERGENIC
3R	26232225	3R_26232225_INS [dm3] 3R_30406503_INS [dm6]	G	GCCG	1.873e^-4	0.596	INTERGENIC
3L	16407664	3L_16407664_SNP [dm3] 3L_16414564_SNP [dm6]	A	G	1.874e^-4	0.596	DOWNSTREAM CG4573 INTRON TMS1
3L	6840269	3L_6840269_SNP [dm3] 3L_6847169_SNP [dm6]	A	G	1.893e^-4	0.596	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12460574	2R_12460574_DEL [dm3] 2R_16573069_DEL [dm6]	AT	A	1.894e^-4	0.596	INTRON CG4927
X	1102338	X_1102338_SNP [dm3] X_1208305_SNP [dm6]	G	A	1.895e^-4	0.596	DOWNSTREAM CG14624 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6453160	3L_6453160_INS [dm3] 3L_6460060_INS [dm6]	C	CGC	1.901e^-4	0.596	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3L	7904266	3L_7904266_SNP [dm3] 3L_7911166_SNP [dm6]	A	G	1.901e^-4	0.596	INTRON pbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5937707	2L_5937707_SNP [dm3] 2L_5937707_SNP [dm6]	G	A	1.903e^-4	0.596	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12452703	2L_12452703_SNP [dm3] 2L_12452703_SNP [dm6]	T	C	1.908e^-4	0.596	SYNONYMOUS_CODING CG5418 UPSTREAM CR17024 DOWNSTREAM Oatp33Eb	TF binding site mE1_TFBS_cad
X	16927312	X_16927312_SNP [dm3] X_17033279_SNP [dm6]	A	G	1.909e^-4	0.596	UPSTREAM CG45002 INTRON CG45002
3L	2282419	3L_2282419_SNP [dm3] 3L_2282419_SNP [dm6]	A	T	1.910e^-4	0.596	UPSTREAM MsR2 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	12531226	3R_12531226_SNP [dm3] 3R_16705504_SNP [dm6]	T	C	1.911e^-4	0.596	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19668549	2R_19668549_SNP [dm3] 2R_23781026_SNP [dm6]	C	A	1.911e^-4	0.596	INTRON CG9850
3R	9230873	3R_9230873_SNP [dm3] 3R_13405151_SNP [dm6]	A	T	1.916e^-4	0.596	UTR_3_PRIME yellow-e2 UPSTREAM yellow-e3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	18368636	3R_18368636_SNP [dm3] 3R_22542914_SNP [dm6]	A	T	1.920e^-4	0.596	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
3R	3770392	3R_3770392_SNP [dm3] 3R_7944670_SNP [dm6]	G	T	1.921e^-4	0.596	INTRON dsx	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6558680	3L_6558680_SNP [dm3] 3L_6565580_SNP [dm6]	A	G	1.931e^-4	0.596	SYNONYMOUS_CODING jv INTRON CG18769	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5104470	2L_5104470_SNP [dm3] 2L_5104470_SNP [dm6]	A	G	1.932e^-4	0.596	INTRON Msp300
2L	2812515	2L_2812515_SNP [dm3] 2L_2812515_SNP [dm6]	C	T	1.938e^-4	0.596	UTR_5_PRIME CG2964 DOWNSTREAM daw	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14028188	2L_14028188_SNP [dm3] 2L_14028188_SNP [dm6]	A	G	1.946e^-4	0.596	INTRON CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2477697	2L_2477697_SNP [dm3] 2L_2477697_SNP [dm6]	A	G	1.948e^-4	0.596	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	14433892	2L_14433892_SNP [dm3] 2L_14433892_SNP [dm6]	T	C	1.955e^-4	0.596	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	5696741	2L_5696741_SNP [dm3] 2L_5696741_SNP [dm6]	A	T	1.958e^-4	0.596	INTERGENIC
3L	9589839	3L_9589839_SNP [dm3] 3L_9596739_SNP [dm6]	T	C	1.970e^-4	0.596	DOWNSTREAM CG42673 INTERGENIC
3R	17961195	3R_17961195_SNP [dm3] 3R_22135473_SNP [dm6]	A	C	1.970e^-4	0.596	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	7663487	X_7663487_SNP [dm3] X_7769454_SNP [dm6]	C	T	1.971e^-4	0.596	DOWNSTREAM CG34338 INTERGENIC
2R	19663008	2R_19663008_SNP [dm3] 2R_23775485_SNP [dm6]	C	T	1.972e^-4	0.596	INTRON CG9850
3R	13100996	3R_13100996_SNP [dm3] 3R_17275274_SNP [dm6]	G	A	1.976e^-4	0.596	INTERGENIC
X	4221043	X_4221043_SNP [dm3] X_4327010_SNP [dm6]	G	T	1.977e^-4	0.596	DOWNSTREAM CG12693 INTRON norpA
3R	25376163	3R_25376163_SNP [dm3] 3R_29550441_SNP [dm6]	A	G	1.977e^-4	0.596	INTERGENIC
3L	6012060	3L_6012060_SNP [dm3] 3L_6018960_SNP [dm6]	T	C	1.981e^-4	0.596	INTRON PVRAP
3R	14519627	3R_14519627_INS [dm3] 3R_18693905_INS [dm6]	C	CA	1.984e^-4	0.596	UPSTREAM CG14300 INTERGENIC
X	4205620	X_4205620_SNP [dm3] X_4311587_SNP [dm6]	G	A	1.984e^-4	0.596	SYNONYMOUS_CODING CG15579 DOWNSTREAM CR44957
3L	6618816	3L_6618816_SNP [dm3] 3L_6625716_SNP [dm6]	A	T	1.984e^-4	0.596	INTRON GluRIA
2R	8003714	2R_8003714_SNP [dm3] 2R_12116209_SNP [dm6]	C	T	1.986e^-4	0.596	INTRON jeb
3L	485619	3L_485619_SNP [dm3] 3L_485619_SNP [dm6]	C	T	1.988e^-4	0.596	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7935822	3L_7935822_SNP [dm3] 3L_7942722_SNP [dm6]	C	T	1.989e^-4	0.596	INTERGENIC	TF binding site mE1_TFBS_cad
X	7574870	X_7574870_SNP [dm3] X_7680837_SNP [dm6]	C	T	1.990e^-4	0.596	UPSTREAM CR45666 DOWNSTREAM CR45665 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3667144	3L_3667144_SNP [dm3] 3L_3667144_SNP [dm6]	G	A	1.994e^-4	0.596	INTERGENIC
X	10111842	X_10111842_DEL [dm3] X_10217809_DEL [dm6]	CGTG	T	1.996e^-4	0.596	UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
3L	4598638	3L_4598638_DEL [dm3] 3L_4598638_DEL [dm6]	TT	T	1.998e^-4	0.596	UTR_5_PRIME Src64B	TF binding site BDTNP1_TFBS_da
3L	3364494	3L_3364494_SNP [dm3] 3L_3364494_SNP [dm6]	C	T	1.998e^-4	0.596	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8737522	X_8737522_SNP [dm3] X_8843489_SNP [dm6]	G	A	2.003e^-4	0.596	INTRON CG12075
2R	5673129	2R_5673129_SNP [dm3] 2R_9785624_SNP [dm6]	C	T	2.004e^-4	0.596	INTRON CG1688
2R	6598778	2R_6598778_SNP [dm3] 2R_10711273_SNP [dm6]	A	C	2.010e^-4	0.596	SYNONYMOUS_CODING stan
3L	13590899	3L_13590899_SNP [dm3] 3L_13597799_SNP [dm6]	A	G	2.012e^-4	0.596	INTRON bru-3
X	4144306	X_4144306_SNP [dm3] X_4250273_SNP [dm6]	A	T	2.013e^-4	0.596	INTERGENIC
2R	6023593	2R_6023593_SNP [dm3] 2R_10136088_SNP [dm6]	A	G	2.014e^-4	0.596	INTRON gem
3L	18379086	3L_18379086_SNP [dm3] 3L_18385986_SNP [dm6]	A	C	2.014e^-4	0.596	INTERGENIC
2L	15874758	2L_15874758_SNP [dm3] 2L_15874758_SNP [dm6]	A	T	2.018e^-4	0.596	INTERGENIC
3L	13217091	3L_13217091_SNP [dm3] 3L_13223991_SNP [dm6]	T	C	2.019e^-4	0.596	INTERGENIC
X	838298	X_838298_SNP [dm3] X_944265_SNP [dm6]	T	C	2.021e^-4	0.596	INTRON CG3703	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2L	10450435	2L_10450435_SNP [dm3] 2L_10450435_SNP [dm6]	A	G	2.027e^-4	0.596	DOWNSTREAM loh INTRON ppk10
3R	13591106	3R_13591106_SNP [dm3] 3R_17765384_SNP [dm6]	T	G	2.030e^-4	0.596	INTERGENIC
X	796305	X_796305_SNP [dm3] X_902272_SNP [dm6]	T	A	2.030e^-4	0.596	INTRON CG43867	TF binding site BDTNP1_TFBS_z
2R	13668376	2R_13668376_SNP [dm3] 2R_17780871_SNP [dm6]	G	A	2.034e^-4	0.596	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_sens
X	17242040	X_17242040_SNP [dm3] X_17348007_SNP [dm6]	T	A	2.035e^-4	0.596	INTERGENIC
3L	12601791	3L_12601791_SNP [dm3] 3L_12608691_SNP [dm6]	T	C	2.043e^-4	0.598	UPSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	7912463	3R_7912463_SNP [dm3] 3R_12086741_SNP [dm6]	C	G	2.053e^-4	0.6	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8429393	X_8429393_SNP [dm3] X_8535360_SNP [dm6]	C	T	2.063e^-4	0.6	INTRON Nrg
3L	18379136	3L_18379136_SNP [dm3] 3L_18386036_SNP [dm6]	C	T	2.067e^-4	0.6	INTERGENIC
3R	12949503	3R_12949503_SNP [dm3] 3R_17123781_SNP [dm6]	G	A	2.068e^-4	0.6	UPSTREAM CG45079 INTRON cher
3L	14833407	3L_14833407_SNP [dm3] 3L_14840307_SNP [dm6]	G	T	2.070e^-4	0.6	INTRON CG17839
2L	2457939	2L_2457939_SNP [dm3] 2L_2457939_SNP [dm6]	G	A	2.072e^-4	0.6	SYNONYMOUS_CODING dpp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2441159	3L_2441159_SNP [dm3] 3L_2441159_SNP [dm6]	C	T	2.073e^-4	0.6	INTRON CG45186	TF binding site mE1_TFBS_inv
3R	20337469	3R_20337469_SNP [dm3] 3R_24511747_SNP [dm6]	A	G	2.081e^-4	0.601	UTR_3_PRIME nAChRbeta2 INTRON nAChRbeta2
2L	3378811	2L_3378811_DEL [dm3] 2L_3378811_DEL [dm6]	CTCG	C	2.084e^-4	0.601	DOWNSTREAM Ptpa INTERGENIC
3L	5485295	3L_5485295_SNP [dm3] 3L_5492195_SNP [dm6]	A	T	2.085e^-4	0.601	INTERGENIC
3R	14071269	3R_14071269_SNP [dm3] 3R_18245547_SNP [dm6]	G	C	2.094e^-4	0.603	INTRON 14-3-3epsilon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6343620	3L_6343620_SNP [dm3] 3L_6350520_SNP [dm6]	T	G	2.106e^-4	0.604	NON_SYNONYMOUS_CODING Sfp65A INTRON CG13300	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7055675	2L_7055675_SNP [dm3] 2L_7055675_SNP [dm6]	T	G	2.116e^-4	0.604	UTR_3_PRIME milt UPSTREAM Mnn1 DOWNSTREAM milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8789687	X_8789687_SNP [dm3] X_8895654_SNP [dm6]	T	A	2.119e^-4	0.604	INTRON Moe	TF binding site BDTNP1_TFBS_dl
X	7061125	X_7061125_INS [dm3] X_7167092_INS [dm6]	C	CTTCTTC	2.125e^-4	0.604	DOWNSTREAM CR44357 INTRON CG9650 EXON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2680015	3L_2680015_SNP [dm3] 3L_2680015_SNP [dm6]	G	A	2.126e^-4	0.604	INTRON Fife	TF binding site mE1_TFBS_chinmo
X	10191969	X_10191969_SNP [dm3] X_10297936_SNP [dm6]	G	A	2.127e^-4	0.604	INTRON alpha-Man-I
2R	1881514	2R_1881514_SNP [dm3] 2R_5994009_SNP [dm6]	G	T	2.130e^-4	0.604	INTRON Src42A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20351117	X_20351117_SNP [dm3] X_20480090_SNP [dm6]	T	A	2.131e^-4	0.604	INTRON RhoGAP19D
X	7574813	X_7574813_SNP [dm3] X_7680780_SNP [dm6]	A	T	2.133e^-4	0.604	UPSTREAM CR45666 DOWNSTREAM CR45665 INTERGENIC
X	7574819	X_7574819_SNP [dm3] X_7680786_SNP [dm6]	G	A	2.133e^-4	0.604	UPSTREAM CR45666 DOWNSTREAM CR45665 INTERGENIC
3L	5467415	3L_5467415_SNP [dm3] 3L_5474315_SNP [dm6]	G	A	2.135e^-4	0.604	INTERGENIC
3L	12116424	3L_12116424_SNP [dm3] 3L_12123324_SNP [dm6]	T	C	2.139e^-4	0.604	SYNONYMOUS_CODING yps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25397099	3R_25397099_SNP [dm3] 3R_29571377_SNP [dm6]	A	G	2.140e^-4	0.604	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23138620	3R_23138620_SNP [dm3] 3R_27312898_SNP [dm6]	T	C	2.147e^-4	0.605	INTRON CG3339
3R	13101010	3R_13101010_SNP [dm3] 3R_17275288_SNP [dm6]	G	A	2.153e^-4	0.605	INTERGENIC
3L	4861062	3L_4861062_SNP [dm3] 3L_4861062_SNP [dm6]	C	G	2.156e^-4	0.605	UPSTREAM CG17150 & 1 other INTERGENIC
2L	1603021	2L_1603021_SNP [dm3] 2L_1603021_SNP [dm6]	A	C	2.168e^-4	0.607	SYNONYMOUS_CODING haf INTRON CG31935
2R	19667924	2R_19667924_SNP [dm3] 2R_23780401_SNP [dm6]	A	C	2.169e^-4	0.607	INTRON CG9850
2L	14028096	2L_14028096_SNP [dm3] 2L_14028096_SNP [dm6]	G	C	2.170e^-4	0.607	NON_SYNONYMOUS_CODING CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13245837	3L_13245837_SNP [dm3] 3L_13252737_SNP [dm6]	A	G	2.178e^-4	0.607	INTRON caps
X	8574187	X_8574187_SNP [dm3] X_8680154_SNP [dm6]	T	G	2.187e^-4	0.607	NON_SYNONYMOUS_CODING CG12772	TF binding site mE1_TFBS_ftz_f1
2R	13668490	2R_13668490_SNP [dm3] 2R_17780985_SNP [dm6]	G	A	2.197e^-4	0.607	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_sens
3L	11923469	3L_11923469_SNP [dm3] 3L_11930369_SNP [dm6]	A	G	2.205e^-4	0.607	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15161166	2L_15161166_SNP [dm3] 2L_15161166_SNP [dm6]	A	G	2.207e^-4	0.607	DOWNSTREAM CG4168 & 1 other INTERGENIC
3R	9230798	3R_9230798_SNP [dm3] 3R_13405076_SNP [dm6]	A	G	2.208e^-4	0.607	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4144610	X_4144610_SNP [dm3] X_4250577_SNP [dm6]	G	A	2.208e^-4	0.607	INTERGENIC
3L	12601792	3L_12601792_SNP [dm3] 3L_12608692_SNP [dm6]	A	C	2.209e^-4	0.607	UPSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8789562	X_8789562_SNP [dm3] X_8895529_SNP [dm6]	C	A	2.209e^-4	0.607	INTRON Moe	TF binding site BDTNP1_TFBS_dl
X	15391266	X_15391266_SNP [dm3] X_15497233_SNP [dm6]	A	T	2.218e^-4	0.607	DOWNSTREAM CR44888 INTRON Gmap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	20417355	X_20417355_SNP [dm3] X_20546328_SNP [dm6]	C	T	2.223e^-4	0.607	INTRON RunxB
3R	21328275	3R_21328275_SNP [dm3] 3R_25502553_SNP [dm6]	C	A	2.224e^-4	0.607	UPSTREAM CR43457 & 1 other EXON CR43456	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	13230095	3R_13230095_SNP [dm3] 3R_17404373_SNP [dm6]	T	G	2.226e^-4	0.607	UPSTREAM CG34280 DOWNSTREAM CG42823 INTERGENIC
3R	18622502	3R_18622502_SNP [dm3] 3R_22796780_SNP [dm6]	T	C	2.229e^-4	0.607	INTERGENIC
2L	5939815	2L_5939815_SNP [dm3] 2L_5939815_SNP [dm6]	T	A	2.234e^-4	0.607	UPSTREAM CR45288 DOWNSTREAM dsf INTERGENIC
3L	11018292	3L_11018292_SNP [dm3] 3L_11025192_SNP [dm6]	A	T	2.235e^-4	0.607	UPSTREAM CG32079 DOWNSTREAM Fad2 INTERGENIC
3R	19601840	3R_19601840_SNP [dm3] 3R_23776118_SNP [dm6]	C	T	2.237e^-4	0.607	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13643518	2R_13643518_SNP [dm3] 2R_17756013_SNP [dm6]	G	A	2.242e^-4	0.607	SYNONYMOUS_CODING CG6385	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	17604614	2R_17604614_DEL [dm3] 2R_21717109_DEL [dm6]	AGAGATTA	A	2.247e^-4	0.607	UTR_3_PRIME Tango11 UPSTREAM CG30398 DOWNSTREAM HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	16053381	X_16053381_MNP [dm3] X_16159348_MNP [dm6]	GTT	CGG	2.248e^-4	0.607	INTERGENIC
2R	16839705	2R_16839705_SNP [dm3] 2R_20952200_SNP [dm6]	T	G	2.255e^-4	0.607	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8014472	3R_8014472_SNP [dm3] 3R_12188750_SNP [dm6]	T	C	2.258e^-4	0.607	INTERGENIC
3L	21142425	3L_21142425_SNP [dm3] 3L_21149325_SNP [dm6]	G	A	2.259e^-4	0.607	INTRON Ac78C
3L	12769251	3L_12769251_SNP [dm3] 3L_12776151_SNP [dm6]	T	G	2.270e^-4	0.607	NON_SYNONYMOUS_CODING CG32106
X	15492331	X_15492331_SNP [dm3] X_15598298_SNP [dm6]	A	T	2.271e^-4	0.607	INTERGENIC
3R	18368770	3R_18368770_SNP [dm3] 3R_22543048_SNP [dm6]	T	C	2.272e^-4	0.607	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
2R	5973634	2R_5973634_SNP [dm3] 2R_10086129_SNP [dm6]	T	G	2.280e^-4	0.607	SYNONYMOUS_CODING sut4 INTRON CG2269
X	7561480	X_7561480_SNP [dm3] X_7667447_SNP [dm6]	A	T	2.280e^-4	0.607	INTRON ct
2R	3584669	2R_3584669_SNP [dm3] 2R_7697164_SNP [dm6]	G	T	2.281e^-4	0.607	INTRON CG1399
3L	5594004	3L_5594004_SNP [dm3] 3L_5600904_SNP [dm6]	G	C	2.281e^-4	0.607	DOWNSTREAM CG10590 INTERGENIC
3L	5433234	3L_5433234_SNP [dm3] 3L_5440134_SNP [dm6]	T	C	2.282e^-4	0.607	UTR_3_PRIME CG34391 DOWNSTREAM CG34391
X	740080	X_740080_SNP [dm3] X_846047_SNP [dm6]	A	G	2.290e^-4	0.607	DOWNSTREAM CG3713 & 1 other INTRON CG43867
3L	20957695	3L_20957695_SNP [dm3] 3L_20964595_SNP [dm6]	T	C	2.291e^-4	0.607	SYNONYMOUS_CODING CG12983 UTR_3_PRIME CG12983
3R	16145922	3R_16145922_SNP [dm3] 3R_20320200_SNP [dm6]	A	C	2.295e^-4	0.607	INTRON CG42668
2R	10112398	2R_10112398_SNP [dm3] 2R_14224893_SNP [dm6]	A	G	2.298e^-4	0.607	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21393811	3R_21393811_SNP [dm3] 3R_25568089_SNP [dm6]	G	A	2.300e^-4	0.607	INTRON msi
3R	12326247	3R_12326247_SNP [dm3] 3R_16500525_SNP [dm6]	C	G	2.302e^-4	0.607	INTRON decay
3R	24062178	3R_24062178_SNP [dm3] 3R_28236456_SNP [dm6]	G	C	2.306e^-4	0.607	DOWNSTREAM CR45041 INTRON CG34354	TF binding site mE1_TFBS_chinmo
3L	21254235	3L_21254235_SNP [dm3] 3L_21261135_SNP [dm6]	T	C	2.307e^-4	0.607	INTRON Eip78C
3R	14633102	3R_14633102_DEL [dm3] 3R_18807380_DEL [dm6]	GTA	G	2.307e^-4	0.607	INTRON CG18208
2L	2477709	2L_2477709_SNP [dm3] 2L_2477709_SNP [dm6]	A	T	2.308e^-4	0.607	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	1862745	2R_1862745_SNP [dm3] 2R_5975240_SNP [dm6]	C	A	2.308e^-4	0.607	NON_SYNONYMOUS_CODING mle UPSTREAM BubR1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14354471	3L_14354471_SNP [dm3] 3L_14361371_SNP [dm6]	C	T	2.317e^-4	0.607	INTRON fz
3L	10857557	3L_10857557_SNP [dm3] 3L_10864457_SNP [dm6]	T	C	2.318e^-4	0.607	INTRON tna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7574846	X_7574846_SNP [dm3] X_7680813_SNP [dm6]	C	A	2.323e^-4	0.607	UPSTREAM CR45666 DOWNSTREAM CR45665 INTERGENIC
3L	5920663	3L_5920663_SNP [dm3] 3L_5927563_SNP [dm6]	G	T	2.324e^-4	0.607	UPSTREAM Vap-33B INTRON Vap-33B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	1913347	2R_1913347_SNP [dm3] 2R_6025842_SNP [dm6]	G	T	2.325e^-4	0.607	DOWNSTREAM SCAP INTERGENIC
3R	5374919	3R_5374919_SNP [dm3] 3R_9549197_SNP [dm6]	A	G	2.328e^-4	0.607	INTRON mura EXON CR42549	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21067257	3R_21067257_SNP [dm3] 3R_25241535_SNP [dm6]	G	A	2.333e^-4	0.608	UTR_3_PRIME to UPSTREAM CG11854 DOWNSTREAM to	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8807383	X_8807383_SNP [dm3] X_8913350_SNP [dm6]	T	A	2.348e^-4	0.608	INTRON rdgA
3L	13304550	3L_13304550_SNP [dm3] 3L_13311450_SNP [dm6]	G	A	2.350e^-4	0.608	INTERGENIC
3R	20806676	3R_20806676_SNP [dm3] 3R_24980954_SNP [dm6]	C	T	2.351e^-4	0.608	INTERGENIC
3R	20806678	3R_20806678_SNP [dm3] 3R_24980956_SNP [dm6]	G	C	2.351e^-4	0.608	INTERGENIC
2R	13056081	2R_13056081_SNP [dm3] 2R_17168576_SNP [dm6]	A	T	2.355e^-4	0.608	INTERGENIC
2R	19573332	2R_19573332_SNP [dm3] 2R_23685809_SNP [dm6]	T	G	2.358e^-4	0.608	UPSTREAM l_2_efl INTRON St3
3L	4589502	3L_4589502_SNP [dm3] 3L_4589502_SNP [dm6]	A	G	2.360e^-4	0.608	INTRON CG42540
3L	5594510	3L_5594510_SNP [dm3] 3L_5601410_SNP [dm6]	A	T	2.360e^-4	0.608	UTR_3_PRIME CG10590
3L	6027771	3L_6027771_SNP [dm3] 3L_6034671_SNP [dm6]	G	C	2.368e^-4	0.609	UPSTREAM yip7 & 1 other INTERGENIC
2R	9589984	2R_9589984_SNP [dm3] 2R_13702479_SNP [dm6]	C	A	2.371e^-4	0.609	INTRON fas
3R	18217428	3R_18217428_SNP [dm3] 3R_22391706_SNP [dm6]	T	A	2.389e^-4	0.613	SYNONYMOUS_CODING CG7059 DOWNSTREAM CG13857	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7953227	2L_7953227_SNP [dm3] 2L_7953227_SNP [dm6]	A	G	2.394e^-4	0.613	INTRON Snoo
2L	12553396	2L_12553396_SNP [dm3] 2L_12553396_SNP [dm6]	G	A	2.403e^-4	0.613	INTERGENIC
X	5357218	X_5357218_SNP [dm3] X_5463185_SNP [dm6]	T	G	2.404e^-4	0.613	INTRON SPR
3L	4792264	3L_4792264_SNP [dm3] 3L_4792264_SNP [dm6]	T	G	2.404e^-4	0.613	SYNONYMOUS_CODING RhoGEF64C	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13591126	3R_13591126_SNP [dm3] 3R_17765404_SNP [dm6]	G	T	2.409e^-4	0.613	INTERGENIC
2L	11035468	2L_11035468_SNP [dm3] 2L_11035468_SNP [dm6]	T	A	2.410e^-4	0.613	DOWNSTREAM CG18666 INTRON Samuel	TF binding site mE1_TFBS_cad
X	9790458	X_9790458_SNP [dm3] X_9896425_SNP [dm6]	A	T	2.414e^-4	0.614	INTRON CG15249
3R	16533505	3R_16533505_SNP [dm3] 3R_20707783_SNP [dm6]	A	T	2.421e^-4	0.614	INTRON Oamb
3R	25518373	3R_25518373_SNP [dm3] 3R_29692651_SNP [dm6]	T	C	2.426e^-4	0.614	UTR_5_PRIME dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14028308	2L_14028308_SNP [dm3] 2L_14028308_SNP [dm6]	G	A	2.426e^-4	0.614	NON_SYNONYMOUS_CODING CG4500 DOWNSTREAM CG18095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17765756	2R_17765756_SNP [dm3] 2R_21878251_SNP [dm6]	G	C	2.434e^-4	0.614	INTRON Fili	TF binding site mE1_TFBS_cnc
3R	22412585	3R_22412585_DEL [dm3] 3R_26586863_DEL [dm6]	TT	T	2.434e^-4	0.614	UTR_3_PRIME scrib INTRON scrib
3R	20833205	3R_20833205_SNP [dm3] 3R_25007483_SNP [dm6]	T	G	2.439e^-4	0.614	INTRON tnc
X	15358828	X_15358828_SNP [dm3] X_15464795_SNP [dm6]	G	A	2.440e^-4	0.614	UTR_3_PRIME CG6294 UPSTREAM CG6299 INTRON CG6299 & 1 other
3L	20856850	3L_20856850_SNP [dm3] 3L_20863750_SNP [dm6]	C	T	2.456e^-4	0.615	INTRON CG32432
2R	8703827	2R_8703827_SNP [dm3] 2R_12816322_SNP [dm6]	C	A	2.456e^-4	0.615	INTERGENIC
X	20938431	X_20938431_SNP [dm3] X_21067404_SNP [dm6]	C	G	2.460e^-4	0.615	UTR_5_PRIME CG32512 INTRON bves
3L	4077466	3L_4077466_SNP [dm3] 3L_4077466_SNP [dm6]	C	T	2.463e^-4	0.615	INTRON Gad1
3R	4948262	3R_4948262_SNP [dm3] 3R_9122540_SNP [dm6]	C	T	2.469e^-4	0.615	INTRON pum
3L	14833316	3L_14833316_SNP [dm3] 3L_14840216_SNP [dm6]	T	A	2.477e^-4	0.615	INTRON CG17839
2R	12348634	2R_12348634_SNP [dm3] 2R_16461129_SNP [dm6]	G	A	2.478e^-4	0.615	INTERGENIC
3R	24699143	3R_24699143_SNP [dm3] 3R_28873421_SNP [dm6]	C	T	2.479e^-4	0.615	SYNONYMOUS_CODING CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9640618	3L_9640618_SNP [dm3] 3L_9647518_SNP [dm6]	C	T	2.487e^-4	0.615	INTRON fry & 1 other
3R	10410357	3R_10410357_SNP [dm3] 3R_14584635_SNP [dm6]	G	A	2.488e^-4	0.615	INTRON stumps
2L	7598856	2L_7598856_SNP [dm3] 2L_7598856_SNP [dm6]	G	T	2.489e^-4	0.615	INTERGENIC
3R	18977042	3R_18977042_SNP [dm3] 3R_23151320_SNP [dm6]	G	C	2.491e^-4	0.615	UTR_3_PRIME unk DOWNSTREAM unk
2R	14678042	2R_14678042_SNP [dm3] 2R_18790537_SNP [dm6]	A	C	2.492e^-4	0.615	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
3L	8208115	3L_8208115_DEL [dm3] 3L_8215015_DEL [dm6]	GATTA	C	2.496e^-4	0.615	UPSTREAM CG8012 INTERGENIC
X	15735588	X_15735588_INS [dm3] X_15841555_INS [dm6]	A	AA	2.497e^-4	0.615	DOWNSTREAM Aats-arg & 1 other INTERGENIC	transposable element FlyBase
3R	21067238	3R_21067238_SNP [dm3] 3R_25241516_SNP [dm6]	A	C	2.497e^-4	0.615	UTR_3_PRIME to UPSTREAM CG11854 DOWNSTREAM to	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26339791	3R_26339791_SNP [dm3] 3R_30514069_SNP [dm6]	A	T	2.502e^-4	0.615	NON_SYNONYMOUS_CODING CG31524 UPSTREAM CG9698
2L	14942689	2L_14942689_SNP [dm3] 2L_14942689_SNP [dm6]	G	A	2.502e^-4	0.615	INTRON CG42313
2L	1675626	2L_1675626_SNP [dm3] 2L_1675626_SNP [dm6]	A	T	2.519e^-4	0.618	INTRON chinmo
3R	22098401	3R_22098401_SNP [dm3] 3R_26272679_SNP [dm6]	T	A	2.522e^-4	0.618	INTRON CG6154
3L	6452916	3L_6452916_SNP [dm3] 3L_6459816_SNP [dm6]	A	G	2.523e^-4	0.618	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
3L	18397101	3L_18397101_SNP [dm3] 3L_18404001_SNP [dm6]	C	G	2.529e^-4	0.618	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
X	7574839	X_7574839_SNP [dm3] X_7680806_SNP [dm6]	C	T	2.529e^-4	0.618	UPSTREAM CR45666 DOWNSTREAM CR45665 INTERGENIC
X	20419321	X_20419321_INS [dm3] X_20548294_INS [dm6]	C	CC	2.538e^-4	0.618	INTRON RunxB
3L	2164513	3L_2164513_SNP [dm3] 3L_2164513_SNP [dm6]	T	C	2.541e^-4	0.618	UPSTREAM CG15822 INTERGENIC
X	15382929	X_15382929_SNP [dm3] X_15488896_SNP [dm6]	T	C	2.546e^-4	0.618	UPSTREAM Gmap INTRON Gmap
3L	21215295	3L_21215295_SNP [dm3] 3L_21222195_SNP [dm6]	C	T	2.549e^-4	0.618	INTRON CG43219
3L	13242764	3L_13242764_SNP [dm3] 3L_13249664_SNP [dm6]	G	A	2.549e^-4	0.618	UPSTREAM CG32119 DOWNSTREAM tRNA:D2:69F INTRON caps
2L	7014213	2L_7014213_SNP [dm3] 2L_7014213_SNP [dm6]	C	T	2.550e^-4	0.618	SYNONYMOUS_CODING CG43322 DOWNSTREAM ade3	TF binding site mE1_TFBS_sens
2R	19668555	2R_19668555_DEL [dm3] 2R_23781032_DEL [dm6]	CCAAAAACCAAATC...	C	2.558e^-4	0.619	INTRON CG9850
2L	17068407	2L_17068407_SNP [dm3] 2L_17068407_SNP [dm6]	C	T	2.561e^-4	0.619	INTERGENIC
3R	14754972	3R_14754972_DEL [dm3] 3R_18929250_DEL [dm6]	GTG	G	2.573e^-4	0.619	UTR_5_PRIME CG42613 UPSTREAM Mpc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10299251	3R_10299251_SNP [dm3] 3R_14473529_SNP [dm6]	A	T	2.577e^-4	0.619	INTRON cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10446469	2L_10446469_SNP [dm3] 2L_10446469_SNP [dm6]	C	A	2.578e^-4	0.619	INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	9047804	3L_9047804_SNP [dm3] 3L_9054704_SNP [dm6]	A	C	2.593e^-4	0.619	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	20966683	3L_20966683_SNP [dm3] 3L_20973583_SNP [dm6]	G	A	2.597e^-4	0.619	SYNONYMOUS_CODING CG33286
X	20938456	X_20938456_SNP [dm3] X_21067429_SNP [dm6]	C	T	2.609e^-4	0.619	UTR_5_PRIME CG32512 INTRON bves
3R	23277998	3R_23277998_SNP [dm3] 3R_27452276_SNP [dm6]	A	T	2.611e^-4	0.619	INTERGENIC
2L	1675625	2L_1675625_SNP [dm3] 2L_1675625_SNP [dm6]	G	T	2.612e^-4	0.619	INTRON chinmo
3L	13242747	3L_13242747_SNP [dm3] 3L_13249647_SNP [dm6]	G	C	2.616e^-4	0.619	UPSTREAM CG32119 DOWNSTREAM tRNA:D2:69F INTRON caps
2L	11852230	2L_11852230_SNP [dm3] 2L_11852230_SNP [dm6]	G	T	2.619e^-4	0.619	INTRON Pde1c & 1 other
2L	15403510	2L_15403510_SNP [dm3] 2L_15403510_SNP [dm6]	G	A	2.621e^-4	0.619	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5629794	3L_5629794_SNP [dm3] 3L_5636694_SNP [dm6]	G	A	2.621e^-4	0.619	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
X	718443	X_718443_SNP [dm3] X_824410_SNP [dm6]	C	A	2.621e^-4	0.619	INTRON CG43867	TF binding site mE1_TFBS_HSA
3L	2436540	3L_2436540_SNP [dm3] 3L_2436540_SNP [dm6]	C	T	2.625e^-4	0.619	INTRON CG45186	TF binding site mE1_TFBS_cad
3R	16600804	3R_16600804_SNP [dm3] 3R_20775082_SNP [dm6]	C	T	2.628e^-4	0.619	INTRON Syp
3L	14942708	3L_14942708_SNP [dm3] 3L_14949608_SNP [dm6]	T	G	2.628e^-4	0.619	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20937615	X_20937615_SNP [dm3] X_21066588_SNP [dm6]	T	A	2.630e^-4	0.619	INTRON bves & 1 other
X	8789647	X_8789647_INS [dm3] X_8895614_INS [dm6]	G	GAATCGGTTCTA...	2.636e^-4	0.619	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3L	8173913	3L_8173913_SNP [dm3] 3L_8180813_SNP [dm6]	C	T	2.641e^-4	0.619	UPSTREAM CG7979 & 1 other INTERGENIC
3L	12601800	3L_12601800_SNP [dm3] 3L_12608700_SNP [dm6]	T	A	2.645e^-4	0.619	UPSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6598751	2R_6598751_SNP [dm3] 2R_10711246_SNP [dm6]	T	C	2.646e^-4	0.619	SYNONYMOUS_CODING stan
3R	7912480	3R_7912480_SNP [dm3] 3R_12086758_SNP [dm6]	A	T	2.647e^-4	0.619	INTRON CG14741	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	908602	X_908602_INS [dm3] X_1014569_INS [dm6]	TACATA	CGGCGGCG	2.647e^-4	0.619	UTR_3_PRIME CG11638 INTRON su_w[a]_
3L	17545485	3L_17545485_SNP [dm3] 3L_17552385_SNP [dm6]	A	T	2.648e^-4	0.619	UTR_3_PRIME CycT DOWNSTREAM CycT
2R	17604635	2R_17604635_SNP [dm3] 2R_21717130_SNP [dm6]	G	A	2.650e^-4	0.619	UTR_3_PRIME Tango11 UPSTREAM CG30398 DOWNSTREAM HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	19666668	2R_19666668_SNP [dm3] 2R_23779145_SNP [dm6]	C	A	2.654e^-4	0.619	INTRON CG9850
3R	14755614	3R_14755614_SNP [dm3] 3R_18929892_SNP [dm6]	C	A	2.656e^-4	0.619	INTRON CG42613	TF binding site BDTNP1_TFBS_dl
X	15312236	X_15312236_SNP [dm3] X_15418203_SNP [dm6]	A	G	2.659e^-4	0.619	INTRON Cngl
2R	1949627	2R_1949627_SNP [dm3] 2R_6062122_SNP [dm6]	A	T	2.661e^-4	0.619	INTRON CCHa2-R
3L	20944823	3L_20944823_SNP [dm3] 3L_20951723_SNP [dm6]	T	C	2.662e^-4	0.619	UPSTREAM CR45243 INTERGENIC
3L	5584314	3L_5584314_SNP [dm3] 3L_5591214_SNP [dm6]	T	C	2.663e^-4	0.619	SYNONYMOUS_CODING spo DOWNSTREAM l_3_psg2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7857155	3L_7857155_SNP [dm3] 3L_7864055_SNP [dm6]	G	A	2.669e^-4	0.619	INTRON Pdp1
3R	22612442	3R_22612442_INS [dm3] 3R_26786720_INS [dm6]	A	ACA	2.670e^-4	0.619	DOWNSTREAM CG42790 INTERGENIC
2R	12818273	2R_12818273_SNP [dm3] 2R_16930768_SNP [dm6]	C	A	2.672e^-4	0.619	INTRON Pkc53E
2L	20074662	2L_20074662_SNP [dm3] 2L_20074662_SNP [dm6]	G	T	2.678e^-4	0.619	DOWNSTREAM bwa INTRON pr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12210778	2L_12210778_SNP [dm3] 2L_12210778_SNP [dm6]	T	A	2.685e^-4	0.62	DOWNSTREAM CG31759 INTRON aret
2L	1384994	2L_1384994_SNP [dm3] 2L_1384994_SNP [dm6]	C	G	2.688e^-4	0.62	NON_SYNONYMOUS_CODING lea
X	15359180	X_15359180_SNP [dm3] X_15465147_SNP [dm6]	G	A	2.714e^-4	0.624	UPSTREAM CG6299 DOWNSTREAM CG6294 INTRON CG6299 & 1 other
3L	2523624	3L_2523624_SNP [dm3] 3L_2523624_SNP [dm6]	G	T	2.724e^-4	0.624	INTRON Spn
2L	5669683	2L_5669683_SNP [dm3] 2L_5669683_SNP [dm6]	C	G	2.727e^-4	0.624	SYNONYMOUS_CODING Hsp60C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15377597	X_15377597_DEL [dm3] X_15483564_DEL [dm6]	CGC	C	2.727e^-4	0.624	FRAME_SHIFT CG6340 INTRON CG6340	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	1728656	2R_1728656_SNP [dm3] 2R_5841151_SNP [dm6]	G	A	2.732e^-4	0.624	INTRON dpr12
3R	5163947	3R_5163947_SNP [dm3] 3R_9338225_SNP [dm6]	T	A	2.733e^-4	0.624	DOWNSTREAM CG8121 EXON CR43301	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	14250834	2L_14250834_SNP [dm3] 2L_14250834_SNP [dm6]	T	C	2.734e^-4	0.624	INTERGENIC
3R	6937382	3R_6937382_SNP [dm3] 3R_11111660_SNP [dm6]	T	G	2.734e^-4	0.624	INTERGENIC
2L	5096380	2L_5096380_SNP [dm3] 2L_5096380_SNP [dm6]	G	C	2.737e^-4	0.624	UTR_5_PRIME CG4230 DOWNSTREAM CG5828	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26684339	3R_26684339_SNP [dm3] 3R_30858617_SNP [dm6]	T	C	2.738e^-4	0.624	INTERGENIC	TF binding site mE1_TFBS_HSA
X	605588	X_605588_DEL [dm3] X_711555_DEL [dm6]	AA	A	2.740e^-4	0.624	INTRON sdk
X	10937994	X_10937994_SNP [dm3] X_11043961_SNP [dm6]	A	T	2.748e^-4	0.624	UPSTREAM CG11160 INTERGENIC
2R	7880622	2R_7880622_SNP [dm3] 2R_11993117_SNP [dm6]	A	G	2.753e^-4	0.624	DOWNSTREAM CG8298 EXON CR45319
2L	20385932	2L_20385932_DEL [dm3] 2L_20385932_DEL [dm6]	CGCA	T	2.756e^-4	0.624	UTR_3_PRIME CG10947 DOWNSTREAM CG10947
3R	22098389	3R_22098389_SNP [dm3] 3R_26272667_SNP [dm6]	C	T	2.758e^-4	0.624	INTRON CG6154
3R	2860329	3R_2860329_SNP [dm3] 3R_7034607_SNP [dm6]	C	A	2.758e^-4	0.624	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26352580	3R_26352580_SNP [dm3] 3R_30526858_SNP [dm6]	G	A	2.760e^-4	0.624	INTRON jdp
X	838297	X_838297_SNP [dm3] X_944264_SNP [dm6]	C	T	2.768e^-4	0.624	INTRON CG3703	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
2R	5973599	2R_5973599_SNP [dm3] 2R_10086094_SNP [dm6]	A	T	2.771e^-4	0.624	SYNONYMOUS_CODING sut4 INTRON CG2269
X	7580104	X_7580104_SNP [dm3] X_7686071_SNP [dm6]	G	A	2.776e^-4	0.624	SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20346765	3R_20346765_SNP [dm3] 3R_24521043_SNP [dm6]	G	T	2.782e^-4	0.624	UTR_3_PRIME Pp1alpha-96A UPSTREAM CR44021
3R	8984886	3R_8984886_SNP [dm3] 3R_13159164_SNP [dm6]	T	A	2.782e^-4	0.624	INTRON timeout
2R	12610909	2R_12610909_SNP [dm3] 2R_16723404_SNP [dm6]	C	T	2.784e^-4	0.624	INTRON CG30463
2R	17357403	2R_17357403_DEL [dm3] 2R_21469898_DEL [dm6]	AGA	A	2.784e^-4	0.624	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	2064099	3R_2064099_SNP [dm3] 3R_6238377_SNP [dm6]	C	A	2.789e^-4	0.624	INTERGENIC	transposable element FlyBase
3R	5163895	3R_5163895_SNP [dm3] 3R_9338173_SNP [dm6]	C	T	2.807e^-4	0.626	DOWNSTREAM CR43301 & 1 other INTERGENIC
2R	6955668	2R_6955668_SNP [dm3] 2R_11068163_SNP [dm6]	A	G	2.809e^-4	0.626	INTRON luna
3R	19615065	3R_19615065_SNP [dm3] 3R_23789343_SNP [dm6]	A	T	2.811e^-4	0.626	INTRON mbc
3R	17978784	3R_17978784_SNP [dm3] 3R_22153062_SNP [dm6]	A	T	2.816e^-4	0.626	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
3L	2436567	3L_2436567_SNP [dm3] 3L_2436567_SNP [dm6]	A	T	2.816e^-4	0.626	INTRON CG45186	TF binding site mE1_TFBS_cad
3L	12279538	3L_12279538_INS [dm3] 3L_12286438_INS [dm6]	G	GGACA	2.820e^-4	0.626	INTERGENIC
3L	11997517	3L_11997517_SNP [dm3] 3L_12004417_SNP [dm6]	G	A	2.822e^-4	0.626	UTR_5_PRIME CG6928 INTRON CG6928
4	370682	4_370682_SNP [dm3] 4_350056_SNP [dm6]	G	T	2.824e^-4	0.626	INTRON PMCA
3L	6836391	3L_6836391_SNP [dm3] 3L_6843291_SNP [dm6]	C	T	2.829e^-4	0.626	INTERGENIC	TF binding site mE1_TFBS_cad
X	3739155	X_3739155_SNP [dm3] X_3845122_SNP [dm6]	C	T	2.834e^-4	0.626	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8706287	3L_8706287_SNP [dm3] 3L_8713187_SNP [dm6]	C	G	2.838e^-4	0.626	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6827802	3L_6827802_SNP [dm3] 3L_6834702_SNP [dm6]	A	T	2.839e^-4	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8743968	3L_8743968_DEL [dm3] 3L_8750868_DEL [dm6]	CA	C	2.840e^-4	0.626	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5758545	X_5758545_SNP [dm3] X_5864512_SNP [dm6]	C	G	2.844e^-4	0.626	DOWNSTREAM CG43137 INTERGENIC
3L	11027753	3L_11027753_SNP [dm3] 3L_11034653_SNP [dm6]	G	C	2.857e^-4	0.628	UPSTREAM CR44547 INTERGENIC
X	8574495	X_8574495_SNP [dm3] X_8680462_SNP [dm6]	C	A	2.863e^-4	0.628	UTR_3_PRIME CG12772 UPSTREAM CG11284	TF binding site mE1_TFBS_ftz_f1
3R	15370151	3R_15370151_SNP [dm3] 3R_19544429_SNP [dm6]	T	A	2.863e^-4	0.628	INTRON Dys
3R	7922800	3R_7922800_SNP [dm3] 3R_12097078_SNP [dm6]	T	C	2.869e^-4	0.629	INTRON dpr17
3R	12693176	3R_12693176_SNP [dm3] 3R_16867454_SNP [dm6]	T	A	2.872e^-4	0.629	INTRON iab-8	TF binding site mE1_TFBS_cad
2R	10112415	2R_10112415_SNP [dm3] 2R_14224910_SNP [dm6]	T	G	2.881e^-4	0.629	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19460732	2R_19460732_SNP [dm3] 2R_23573209_SNP [dm6]	T	C	2.881e^-4	0.629	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	17005678	2R_17005678_SNP [dm3] 2R_21118173_SNP [dm6]	A	G	2.888e^-4	0.63	UPSTREAM CG9394 INTRON ktub	TF binding site mE1_TFBS_cad
2L	7011024	2L_7011024_SNP [dm3] 2L_7011024_SNP [dm6]	T	C	2.894e^-4	0.63	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8725735	3L_8725735_SNP [dm3] 3L_8732635_SNP [dm6]	C	T	2.899e^-4	0.631	DOWNSTREAM Prm & 1 other INTERGENIC
3R	3187991	3R_3187991_SNP [dm3] 3R_7362269_SNP [dm6]	T	C	2.905e^-4	0.631	UPSTREAM CG17944 INTERGENIC
X	15289721	X_15289721_SNP [dm3] X_15395688_SNP [dm6]	T	C	2.911e^-4	0.632	INTRON Cngl
3L	3358522	3L_3358522_SNP [dm3] 3L_3358522_SNP [dm6]	C	A	2.916e^-4	0.632	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18343500	3L_18343500_SNP [dm3] 3L_18350400_SNP [dm6]	T	C	2.923e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	9237148	2L_9237148_SNP [dm3] 2L_9237148_SNP [dm6]	T	G	2.928e^-4	0.633	UPSTREAM tRNA:CR31885 INTRON tai
2L	5510575	2L_5510575_SNP [dm3] 2L_5510575_SNP [dm6]	A	C	2.928e^-4	0.633	INTERGENIC
3L	16537003	3L_16537003_SNP [dm3] 3L_16543903_SNP [dm6]	C	A	2.933e^-4	0.633	UPSTREAM CG43373 DOWNSTREAM CG13033 INTERGENIC
2R	19521875	2R_19521875_SNP [dm3] 2R_23634352_SNP [dm6]	C	A	2.935e^-4	0.633	INTRON retn	TF binding site mE1_TFBS_cad
3L	18385420	3L_18385420_SNP [dm3] 3L_18392320_SNP [dm6]	T	G	2.938e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7048437	2L_7048437_SNP [dm3] 2L_7048437_SNP [dm6]	A	T	2.941e^-4	0.633	UPSTREAM milt INTRON milt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8561434	3L_8561434_SNP [dm3] 3L_8568334_SNP [dm6]	C	G	2.948e^-4	0.633	NON_SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17549587	3R_17549587_SNP [dm3] 3R_21723865_SNP [dm6]	C	A	2.952e^-4	0.633	DOWNSTREAM CR44096 INTERGENIC
3L	8575038	3L_8575038_SNP [dm3] 3L_8581938_SNP [dm6]	C	T	2.959e^-4	0.633	INTRON CG43078
X	12451974	X_12451974_SNP [dm3] X_12557941_SNP [dm6]	A	T	2.960e^-4	0.633	INTRON CG43921
3L	5669866	3L_5669866_SNP [dm3] 3L_5676766_SNP [dm6]	G	A	2.963e^-4	0.633	SPLICE_SITE_REGION sif INTRON sif
2R	15143958	2R_15143958_SNP [dm3] 2R_19256453_SNP [dm6]	T	G	2.974e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	14942690	3L_14942690_SNP [dm3] 3L_14949590_SNP [dm6]	C	A	2.975e^-4	0.633	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9464664	X_9464664_SNP [dm3] X_9570631_SNP [dm6]	T	C	2.983e^-4	0.633	SYNONYMOUS_CODING Cubn DOWNSTREAM CG32699
2R	7108161	2R_7108161_SNP [dm3] 2R_11220656_SNP [dm6]	C	T	2.985e^-4	0.633	UPSTREAM CG9084 INTRON Syx6
3L	20966773	3L_20966773_SNP [dm3] 3L_20973673_SNP [dm6]	C	G	2.988e^-4	0.633	SYNONYMOUS_CODING CG33286
3R	19767023	3R_19767023_SNP [dm3] 3R_23941301_SNP [dm6]	G	A	2.990e^-4	0.633	INTRON Gdh
X	17242048	X_17242048_SNP [dm3] X_17348015_SNP [dm6]	A	T	2.996e^-4	0.633	INTERGENIC
2R	5573833	2R_5573833_SNP [dm3] 2R_9686328_SNP [dm6]	A	G	2.999e^-4	0.633	INTERGENIC
3R	7521700	3R_7521700_SNP [dm3] 3R_11695978_SNP [dm6]	C	T	3.003e^-4	0.633	UPSTREAM CG14717 INTERGENIC
2L	6998748	2L_6998748_SNP [dm3] 2L_6998748_SNP [dm6]	G	A	3.004e^-4	0.633	INTRON uif	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	7221148	2L_7221148_SNP [dm3] 2L_7221148_SNP [dm6]	G	A	3.006e^-4	0.633	SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_sens
2L	15412034	2L_15412034_SNP [dm3] 2L_15412034_SNP [dm6]	A	C	3.010e^-4	0.633	INTERGENIC
X	7574787	X_7574787_SNP [dm3] X_7680754_SNP [dm6]	G	T	3.014e^-4	0.633	UPSTREAM CR45666 DOWNSTREAM CR45665 INTERGENIC
X	20350961	X_20350961_SNP [dm3] X_20479934_SNP [dm6]	T	C	3.021e^-4	0.633	INTRON RhoGAP19D
X	3398429	X_3398429_INS [dm3] X_3504396_INS [dm6]	G	GCA	3.022e^-4	0.633	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25551868	3R_25551868_SNP [dm3] 3R_29726146_SNP [dm6]	G	T	3.024e^-4	0.633	DOWNSTREAM CG18731 INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	20958213	3L_20958213_SNP [dm3] 3L_20965113_SNP [dm6]	C	T	3.036e^-4	0.633	NON_SYNONYMOUS_CODING CG12983 UTR_3_PRIME CG12983	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10980703	3L_10980703_SNP [dm3] 3L_10987603_SNP [dm6]	A	T	3.036e^-4	0.633	INTRON klu
3L	4019505	3L_4019505_SNP [dm3] 3L_4019505_SNP [dm6]	A	T	3.037e^-4	0.633	INTRON fd64A	TF binding site BDTNP1_TFBS_twi
3L	3262812	3L_3262812_SNP [dm3] 3L_3262812_SNP [dm6]	A	G	3.037e^-4	0.633	INTRON ckd
X	20352310	X_20352310_SNP [dm3] X_20481283_SNP [dm6]	A	T	3.037e^-4	0.633	INTRON RhoGAP19D	TF binding site mE1_TFBS_Trl
X	8533024	X_8533024_SNP [dm3] X_8638991_SNP [dm6]	T	G	3.039e^-4	0.633	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4242554	3L_4242554_SNP [dm3] 3L_4242554_SNP [dm6]	T	C	3.045e^-4	0.633	UTR_3_PRIME CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	7087606	2L_7087606_SNP [dm3] 2L_7087606_SNP [dm6]	T	C	3.051e^-4	0.633	INTERGENIC
3L	16304141	3L_16304141_SNP [dm3] 3L_16311041_SNP [dm6]	T	A	3.054e^-4	0.633	EXON CR32160
3L	6452065	3L_6452065_SNP [dm3] 3L_6458965_SNP [dm6]	A	T	3.055e^-4	0.633	INTRON CG42747
2R	8937085	2R_8937085_SNP [dm3] 2R_13049580_SNP [dm6]	C	T	3.059e^-4	0.633	SYNONYMOUS_CODING CG13324
X	20351745	X_20351745_SNP [dm3] X_20480718_SNP [dm6]	G	A	3.059e^-4	0.633	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8944216	2R_8944216_DEL [dm3] 2R_13056711_DEL [dm6]	CGTACACAAGC...	C	3.067e^-4	0.633	UTR_3_PRIME Drl-2
X	12157242	X_12157242_SNP [dm3] X_12263209_SNP [dm6]	T	A	3.068e^-4	0.633	INTRON Ten-a
X	15312373	X_15312373_SNP [dm3] X_15418340_SNP [dm6]	G	A	3.073e^-4	0.633	INTRON Cngl
3L	16077399	3L_16077399_SNP [dm3] 3L_16084299_SNP [dm6]	T	C	3.074e^-4	0.633	SYNONYMOUS_CODING CG13075 DOWNSTREAM CG33258 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8833986	3L_8833986_SNP [dm3] 3L_8840886_SNP [dm6]	G	T	3.074e^-4	0.633	INTRON dally	TF binding site mE1_TFBS_HSA
3L	20945552	3L_20945552_SNP [dm3] 3L_20952452_SNP [dm6]	C	A	3.076e^-4	0.633	INTERGENIC
3R	19001352	3R_19001352_SNP [dm3] 3R_23175630_SNP [dm6]	A	C	3.078e^-4	0.633	INTRON Irk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15666825	X_15666825_SNP [dm3] X_15772792_SNP [dm6]	T	C	3.089e^-4	0.634	SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
2L	7056240	2L_7056240_SNP [dm3] 2L_7056240_SNP [dm6]	T	C	3.091e^-4	0.634	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	8075137	3L_8075137_SNP [dm3] 3L_8082037_SNP [dm6]	T	A	3.100e^-4	0.636	INTRON Ect4 EXON CR43974	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	10148495	X_10148495_SNP [dm3] X_10254462_SNP [dm6]	A	T	3.110e^-4	0.636	INTRON Hk
X	16142664	X_16142664_SNP [dm3] X_16248631_SNP [dm6]	C	T	3.110e^-4	0.636	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18880427	2L_18880427_SNP [dm3] 2L_18880427_SNP [dm6]	C	A	3.115e^-4	0.636	INTRON tup	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	5258743	3R_5258743_SNP [dm3] 3R_9433021_SNP [dm6]	G	C	3.116e^-4	0.636	INTRON ps	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	623235	X_623235_SNP [dm3] X_729202_SNP [dm6]	T	A	3.124e^-4	0.636	INTRON sdk
2L	16406812	2L_16406812_SNP [dm3] 2L_16406812_SNP [dm6]	T	C	3.127e^-4	0.636	UPSTREAM CG5888 INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	425458	2L_425458_SNP [dm3] 2L_425458_SNP [dm6]	C	A	3.128e^-4	0.636	DOWNSTREAM BBS8 INTERGENIC
2L	12454155	2L_12454155_SNP [dm3] 2L_12454155_SNP [dm6]	A	T	3.130e^-4	0.636	UPSTREAM CG5418 EXON CR17024	TF binding site mE1_TFBS_sens
X	9026703	X_9026703_INS [dm3] X_9132670_INS [dm6]	T	TAACTGGT	3.131e^-4	0.636	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens
X	18192215	X_18192215_DEL [dm3] X_18298182_DEL [dm6]	GTT	G	3.135e^-4	0.636	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11162738	2R_11162738_DEL [dm3] 2R_15275233_DEL [dm6]	TAA	G	3.147e^-4	0.636	SPLICE_SITE_REGION Trpm INTRON Trpm
2R	14930512	2R_14930512_SNP [dm3] 2R_19043007_SNP [dm6]	T	G	3.150e^-4	0.636	INTERGENIC
3R	26339690	3R_26339690_SNP [dm3] 3R_30513968_SNP [dm6]	G	C	3.152e^-4	0.636	NON_SYNONYMOUS_CODING CG31524 UPSTREAM CG9698
3R	13592131	3R_13592131_SNP [dm3] 3R_17766409_SNP [dm6]	A	C	3.152e^-4	0.636	INTERGENIC
3L	18417676	3L_18417676_SNP [dm3] 3L_18424576_SNP [dm6]	G	C	3.155e^-4	0.636	INTERGENIC
2L	7518654	2L_7518654_SNP [dm3] 2L_7518654_SNP [dm6]	C	T	3.160e^-4	0.637	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6179429	3R_6179429_DEL [dm3] 3R_10353707_DEL [dm6]	GGCAGGCTTTTCA...	G	3.164e^-4	0.637	INTRON jumu	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
2L	1384695	2L_1384695_SNP [dm3] 2L_1384695_SNP [dm6]	G	T	3.170e^-4	0.637	INTRON lea
3L	14370975	3L_14370975_DEL [dm3] 3L_14377875_DEL [dm6]	AA	A	3.183e^-4	0.639	INTERGENIC
2R	16433329	2R_16433329_SNP [dm3] 2R_20545824_SNP [dm6]	T	A	3.183e^-4	0.639	DOWNSTREAM CG30148 INTERGENIC
2L	4223612	2L_4223612_SNP [dm3] 2L_4223612_SNP [dm6]	G	T	3.188e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5932927	2L_5932927_SNP [dm3] 2L_5932927_SNP [dm6]	T	C	3.192e^-4	0.639	INTRON dsf	TF binding site mE1_TFBS_cad
3L	6694637	3L_6694637_SNP [dm3] 3L_6701537_SNP [dm6]	G	A	3.195e^-4	0.639	INTRON SP1173
X	15379643	X_15379643_SNP [dm3] X_15485610_SNP [dm6]	G	A	3.197e^-4	0.639	SYNONYMOUS_CODING CG6340 UTR_3_PRIME CG6340	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14930478	2R_14930478_SNP [dm3] 2R_19042973_SNP [dm6]	A	C	3.210e^-4	0.64	INTERGENIC
3L	8710984	3L_8710984_SNP [dm3] 3L_8717884_SNP [dm6]	A	T	3.210e^-4	0.64	INTERGENIC
3L	10688037	3L_10688037_SNP [dm3] 3L_10694937_SNP [dm6]	G	T	3.212e^-4	0.64	UPSTREAM CG6463 INTRON NijA
3R	4931102	3R_4931102_SNP [dm3] 3R_9105380_SNP [dm6]	A	C	3.220e^-4	0.64	INTRON pum
X	16931180	X_16931180_SNP [dm3] X_17037147_SNP [dm6]	A	G	3.225e^-4	0.64	INTRON CG45002
3L	5629849	3L_5629849_SNP [dm3] 3L_5636749_SNP [dm6]	T	C	3.228e^-4	0.64	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
3L	6444914	3L_6444914_SNP [dm3] 3L_6451814_SNP [dm6]	A	C	3.229e^-4	0.64	INTRON CG42747
2L	14123413	2L_14123413_SNP [dm3] 2L_14123413_SNP [dm6]	G	A	3.249e^-4	0.642	INTERGENIC
3L	9921237	3L_9921237_SNP [dm3] 3L_9928137_SNP [dm6]	C	T	3.255e^-4	0.642	INTRON CG34356	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25372978	3R_25372978_SNP [dm3] 3R_29547256_SNP [dm6]	C	T	3.256e^-4	0.642	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	18447477	3R_18447477_SNP [dm3] 3R_22621755_SNP [dm6]	G	A	3.258e^-4	0.642	SYNONYMOUS_CODING loco	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20171803	3R_20171803_SNP [dm3] 3R_24346081_SNP [dm6]	G	C	3.258e^-4	0.642	UTR_3_PRIME CG5746
2R	14930473	2R_14930473_SNP [dm3] 2R_19042968_SNP [dm6]	T	C	3.260e^-4	0.642	INTERGENIC
X	678846	X_678846_SNP [dm3] X_784813_SNP [dm6]	G	A	3.261e^-4	0.642	UTR_5_PRIME tw DOWNSTREAM fz3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7607021	2R_7607021_SNP [dm3] 2R_11719516_SNP [dm6]	T	G	3.263e^-4	0.642	INTRON pyr
3L	3112361	3L_3112361_SNP [dm3] 3L_3112361_SNP [dm6]	C	T	3.274e^-4	0.643	NON_SYNONYMOUS_CODING CG45067
3L	5523009	3L_5523009_SNP [dm3] 3L_5529909_SNP [dm6]	A	T	3.277e^-4	0.643	UPSTREAM Lkr INTERGENIC
3R	13591189	3R_13591189_SNP [dm3] 3R_17765467_SNP [dm6]	A	G	3.280e^-4	0.643	INTERGENIC
X	20939765	X_20939765_SNP [dm3] X_21068738_SNP [dm6]	C	G	3.286e^-4	0.643	INTRON bves	TF binding site mE1_TFBS_Trl
X	5758498	X_5758498_SNP [dm3] X_5864465_SNP [dm6]	A	T	3.312e^-4	0.644	DOWNSTREAM CG43137 INTERGENIC
3L	15014337	3L_15014337_SNP [dm3] 3L_15021237_SNP [dm6]	C	A	3.315e^-4	0.644	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6955562	2R_6955562_SNP [dm3] 2R_11068057_SNP [dm6]	T	C	3.318e^-4	0.644	INTRON luna
2R	3068249	2R_3068249_SNP [dm3] 2R_7180744_SNP [dm6]	T	C	3.321e^-4	0.644	UPSTREAM CG30385 DOWNSTREAM CG33140 INTRON pk
2R	12093264	2R_12093264_SNP [dm3] 2R_16205759_SNP [dm6]	G	C	3.324e^-4	0.644	SYNONYMOUS_CODING mrj UPSTREAM mrj	TF binding site mE1_TFBS_sens
2L	7056202	2L_7056202_INS [dm3] 2L_7056202_INS [dm6]	T	TT	3.328e^-4	0.644	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_zfh1
3L	16915881	3L_16915881_SNP [dm3] 3L_16922781_SNP [dm6]	G	A	3.336e^-4	0.644	UPSTREAM CG13028 DOWNSTREAM Lmpt INTERGENIC
3L	5519549	3L_5519549_SNP [dm3] 3L_5526449_SNP [dm6]	A	G	3.336e^-4	0.644	INTRON Lkr
X	10148547	X_10148547_SNP [dm3] X_10254514_SNP [dm6]	A	C	3.338e^-4	0.644	INTRON Hk
3L	8705791	3L_8705791_SNP [dm3] 3L_8712691_SNP [dm6]	A	C	3.341e^-4	0.644	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7009862	3L_7009862_SNP [dm3] 3L_7016762_SNP [dm6]	G	T	3.344e^-4	0.644	INTRON Mp
3R	18527772	3R_18527772_SNP [dm3] 3R_22702050_SNP [dm6]	A	T	3.345e^-4	0.644	UTR_5_PRIME CCAP & 1 other UPSTREAM CCAP	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5443584	3L_5443584_SNP [dm3] 3L_5450484_SNP [dm6]	A	C	3.347e^-4	0.644	INTERGENIC
3R	13303928	3R_13303928_SNP [dm3] 3R_17478206_SNP [dm6]	C	G	3.348e^-4	0.644	INTRON Dscam3
3R	25835830	3R_25835830_SNP [dm3] 3R_30010108_SNP [dm6]	G	A	3.349e^-4	0.644	UTR_3_PRIME Nlp UPSTREAM CG7912 DOWNSTREAM CG7920
3R	18018013	3R_18018013_SNP [dm3] 3R_22192291_SNP [dm6]	A	G	3.351e^-4	0.644	INTRON SKIP
3R	25884787	3R_25884787_SNP [dm3] 3R_30059065_SNP [dm6]	C	T	3.358e^-4	0.644	SYNONYMOUS_CODING sima DOWNSTREAM CG7950 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	13793727	2R_13793727_SNP [dm3] 2R_17906222_SNP [dm6]	C	T	3.361e^-4	0.644	INTRON Elk	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5937495	2L_5937495_SNP [dm3] 2L_5937495_SNP [dm6]	G	T	3.361e^-4	0.644	INTRON dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12280705	3L_12280705_SNP [dm3] 3L_12287605_SNP [dm6]	A	T	3.372e^-4	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16188403	2L_16188403_SNP [dm3] 2L_16188403_SNP [dm6]	G	A	3.376e^-4	0.644	INTRON Ca-alpha1D
2L	2147901	2L_2147901_SNP [dm3] 2L_2147901_SNP [dm6]	T	A	3.378e^-4	0.644	SYNONYMOUS_CODING CG7261 UPSTREAM CG11723	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17807348	2L_17807348_SNP [dm3] 2L_17807348_SNP [dm6]	A	T	3.383e^-4	0.644	INTRON CadN2
3L	12280672	3L_12280672_SNP [dm3] 3L_12287572_SNP [dm6]	G	T	3.390e^-4	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3613852	3R_3613852_SNP [dm3] 3R_7788130_SNP [dm6]	T	C	3.395e^-4	0.644	UPSTREAM CG18748 DOWNSTREAM CG18746 INTERGENIC
3L	16393219	3L_16393219_SNP [dm3] 3L_16400119_SNP [dm6]	C	A	3.396e^-4	0.644	UTR_5_PRIME CG44836
3R	7632516	3R_7632516_SNP [dm3] 3R_11806794_SNP [dm6]	G	T	3.404e^-4	0.644	UPSTREAM ClC-a INTRON ClC-a	TF binding site BDTNP1_TFBS_prd
2L	9181840	2L_9181840_SNP [dm3] 2L_9181840_SNP [dm6]	G	A	3.409e^-4	0.644	INTRON tai
3L	14941945	3L_14941945_SNP [dm3] 3L_14948845_SNP [dm6]	G	A	3.422e^-4	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6479345	3L_6479345_SNP [dm3] 3L_6486245_SNP [dm6]	C	T	3.424e^-4	0.644	UTR_3_PRIME CG10147 DOWNSTREAM CG10147 & 1 other
2R	15143951	2R_15143951_SNP [dm3] 2R_19256446_SNP [dm6]	G	T	3.425e^-4	0.644	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	10450742	2L_10450742_SNP [dm3] 2L_10450742_SNP [dm6]	A	G	3.426e^-4	0.644	SPLICE_SITE_REGION ppk10 DOWNSTREAM loh INTRON ppk10
3R	10293327	3R_10293327_SNP [dm3] 3R_14467605_SNP [dm6]	A	C	3.435e^-4	0.644	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1522890	3L_1522890_SNP [dm3] 3L_1522890_SNP [dm6]	T	C	3.454e^-4	0.644	SYNONYMOUS_CODING Psa DOWNSTREAM CG12090	TF binding site mE1_TFBS_cad
X	627317	X_627317_SNP [dm3] X_733284_SNP [dm6]	A	T	3.456e^-4	0.644	INTRON sdk
2L	17807352	2L_17807352_SNP [dm3] 2L_17807352_SNP [dm6]	A	C	3.459e^-4	0.644	INTRON CadN2
X	10882239	X_10882239_SNP [dm3] X_10988206_SNP [dm6]	G	A	3.461e^-4	0.644	INTRON CG42339
3R	22098286	3R_22098286_SNP [dm3] 3R_26272564_SNP [dm6]	G	C	3.462e^-4	0.644	INTRON CG6154
3L	21037611	3L_21037611_SNP [dm3] 3L_21044511_SNP [dm6]	G	A	3.465e^-4	0.644	INTRON siz
3R	12697621	3R_12697621_SNP [dm3] 3R_16871899_SNP [dm6]	T	G	3.466e^-4	0.644	INTRON iab-8	TF binding site mE1_TFBS_cad
X	20351681	X_20351681_SNP [dm3] X_20480654_SNP [dm6]	C	T	3.466e^-4	0.644	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8514643	3R_8514643_SNP [dm3] 3R_12688921_SNP [dm6]	C	T	3.470e^-4	0.644	DOWNSTREAM Su_fu_ INTRON kar	TF binding site mE1_TFBS_chinmo

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.001e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.01009
In_3R_K	0.06006
In_3R_Mo	0.02378

Kruskal-Wallis test

Covariate	χ²	p-value
In_2R_NS	7.5006	0.0235
In_3R_K	6.175	0.0456
In_3R_Mo	6.945	0.031

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2235 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1839190	3L_1839190_SNP [dm3] 3L_1839190_SNP [dm6]	G	T	6.264e^-7	0.422	INTERGENIC
2L	16366233	2L_16366233_SNP [dm3] 2L_16366233_SNP [dm6]	C	T	8.949e^-7	0.422	SYNONYMOUS_CODING jhamt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6369038	X_6369038_SNP [dm3] X_6475005_SNP [dm6]	G	A	1.331e^-6	0.422	INTRON CG42340
2L	8314898	2L_8314898_SNP [dm3] 2L_8314898_SNP [dm6]	C	T	1.367e^-6	0.422	SYNONYMOUS_CODING CG7806
3L	5416435	3L_5416435_SNP [dm3] 3L_5423335_SNP [dm6]	A	T	1.424e^-6	0.422	UPSTREAM CG34391 INTERGENIC
3L	14833887	3L_14833887_SNP [dm3] 3L_14840787_SNP [dm6]	C	G	1.697e^-6	0.422	INTRON CG17839
3L	14834222	3L_14834222_SNP [dm3] 3L_14841122_SNP [dm6]	T	A	1.774e^-6	0.422	INTRON CG17839
3L	467271	3L_467271_INS [dm3] 3L_467271_INS [dm6]	A	AA	2.178e^-6	0.422	INTRON klar
3L	1864387	3L_1864387_DEL [dm3] 3L_1864387_DEL [dm6]	GTTG	G	2.259e^-6	0.422		TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	24705729	3R_24705729_SNP [dm3] 3R_28880007_SNP [dm6]	T	C	2.739e^-6	0.422	SYNONYMOUS_CODING CG14523 UPSTREAM CG14527 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8004845	2R_8004845_SNP [dm3] 2R_12117340_SNP [dm6]	G	A	2.953e^-6	0.422	SYNONYMOUS_CODING jeb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1838616	3L_1838616_SNP [dm3] 3L_1838616_SNP [dm6]	T	A	3.089e^-6	0.422	INTERGENIC
3L	1863681	3L_1863681_SNP [dm3] 3L_1863681_SNP [dm6]	G	A	3.166e^-6	0.422	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9591529	3L_9591529_SNP [dm3] 3L_9598429_SNP [dm6]	A	G	3.954e^-6	0.422	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC
3L	14833303	3L_14833303_SNP [dm3] 3L_14840203_SNP [dm6]	C	T	4.168e^-6	0.422	INTRON CG17839
3L	1838599	3L_1838599_SNP [dm3] 3L_1838599_SNP [dm6]	T	A	4.296e^-6	0.422	INTERGENIC
X	20561887	X_20561887_SNP [dm3] X_20690860_SNP [dm6]	C	G	4.527e^-6	0.422	UTR_5_PRIME run UPSTREAM CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	23138620	3R_23138620_SNP [dm3] 3R_27312898_SNP [dm6]	T	C	4.605e^-6	0.422	INTRON CG3339
3R	18368812	3R_18368812_SNP [dm3] 3R_22543090_SNP [dm6]	A	T	4.909e^-6	0.422	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
3L	1864659	3L_1864659_SNP [dm3] 3L_1864659_SNP [dm6]	A	G	5.489e^-6	0.422	SYNONYMOUS_CODING HBS1 UPSTREAM CG12025	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11891751	2L_11891751_INS [dm3] 2L_11891751_INS [dm6]	G	CC	5.545e^-6	0.422	INTRON Pde1c
3L	14830790	3L_14830790_SNP [dm3] 3L_14837690_SNP [dm6]	G	A	5.616e^-6	0.422	INTRON CG17839
3L	1864734	3L_1864734_SNP [dm3] 3L_1864734_SNP [dm6]	C	T	6.053e^-6	0.422	SYNONYMOUS_CODING HBS1 UPSTREAM CG12025	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1864404	3L_1864404_SNP [dm3] 3L_1864404_SNP [dm6]	G	A	6.073e^-6	0.422	SYNONYMOUS_CODING HBS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5416464	3L_5416464_SNP [dm3] 3L_5423364_SNP [dm6]	G	A	6.191e^-6	0.422	UPSTREAM CG34391 INTERGENIC
3L	1839565	3L_1839565_SNP [dm3] 3L_1839565_SNP [dm6]	A	T	6.215e^-6	0.422	DOWNSTREAM Cpr62Bc INTERGENIC
2R	15402573	2R_15402573_SNP [dm3] 2R_19515068_SNP [dm6]	C	T	6.649e^-6	0.422	INTERGENIC
X	11226323	X_11226323_SNP [dm3] X_11332290_SNP [dm6]	C	T	6.773e^-6	0.422	SPLICE_SITE_REGION CG1657 INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7518654	2L_7518654_SNP [dm3] 2L_7518654_SNP [dm6]	C	T	6.794e^-6	0.422	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1839313	3L_1839313_SNP [dm3] 3L_1839313_SNP [dm6]	T	A	6.844e^-6	0.422	DOWNSTREAM Cpr62Bc INTERGENIC
3L	1839586	3L_1839586_SNP [dm3] 3L_1839586_SNP [dm6]	C	A	7.086e^-6	0.422	DOWNSTREAM Cpr62Bc INTERGENIC
3L	14833407	3L_14833407_SNP [dm3] 3L_14840307_SNP [dm6]	G	T	7.207e^-6	0.422	INTRON CG17839
3L	2313500	3L_2313500_SNP [dm3] 3L_2313500_SNP [dm6]	G	C	7.418e^-6	0.422	INTERGENIC
2L	7597100	2L_7597100_SNP [dm3] 2L_7597100_SNP [dm6]	T	G	7.807e^-6	0.431	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	1863708	3L_1863708_SNP [dm3] 3L_1863708_SNP [dm6]	G	A	8.927e^-6	0.458	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1839298	3L_1839298_SNP [dm3] 3L_1839298_SNP [dm6]	G	T	9.153e^-6	0.458	DOWNSTREAM Cpr62Bc INTERGENIC
3R	18368777	3R_18368777_SNP [dm3] 3R_22543055_SNP [dm6]	T	A	9.355e^-6	0.458	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
X	6680418	X_6680418_SNP [dm3] X_6786385_SNP [dm6]	A	G	9.484e^-6	0.458	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
X	11226273	X_11226273_SNP [dm3] X_11332240_SNP [dm6]	G	A	9.515e^-6	0.458	SPLICE_SITE_REGION CG1657 INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11581828	3L_11581828_SNP [dm3] 3L_11588728_SNP [dm6]	G	C	9.759e^-6	0.458	UPSTREAM rt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18368767	3R_18368767_SNP [dm3] 3R_22543045_SNP [dm6]	G	C	1.024e^-5	0.458	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
2R	6665816	2R_6665816_SNP [dm3] 2R_10778311_SNP [dm6]	G	C	1.080e^-5	0.458	INTRON CG33144
2R	8003714	2R_8003714_SNP [dm3] 2R_12116209_SNP [dm6]	C	T	1.085e^-5	0.458	INTRON jeb
2L	6815048	2L_6815048_SNP [dm3] 2L_6815048_SNP [dm6]	G	A	1.100e^-5	0.458	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	6572671	3L_6572671_SNP [dm3] 3L_6579571_SNP [dm6]	T	C	1.108e^-5	0.458	INTRON CG18769 & 1 other
3L	5416486	3L_5416486_SNP [dm3] 3L_5423386_SNP [dm6]	C	T	1.137e^-5	0.458	UPSTREAM CG34391 INTERGENIC
2L	7637910	2L_7637910_SNP [dm3] 2L_7637910_SNP [dm6]	C	T	1.146e^-5	0.458	DOWNSTREAM CR44800 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	1619485	2L_1619485_SNP [dm3] 2L_1619485_SNP [dm6]	T	A	1.207e^-5	0.463	EXON CR44603
3L	1864431	3L_1864431_SNP [dm3] 3L_1864431_SNP [dm6]	G	T	1.209e^-5	0.463	SYNONYMOUS_CODING HBS1 UPSTREAM CG12025	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14833366	3L_14833366_SNP [dm3] 3L_14840266_SNP [dm6]	A	T	1.243e^-5	0.466	INTRON CG17839
2L	7598100	2L_7598100_SNP [dm3] 2L_7598100_SNP [dm6]	T	C	1.329e^-5	0.474	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8390200	3L_8390200_SNP [dm3] 3L_8397100_SNP [dm6]	G	A	1.337e^-5	0.474	UPSTREAM CG7120 INTRON CG7120	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7030096	2L_7030096_SNP [dm3] 2L_7030096_SNP [dm6]	A	G	1.338e^-5	0.474	DOWNSTREAM Rab30 INTERGENIC
2L	9227574	2L_9227574_SNP [dm3] 2L_9227574_SNP [dm6]	C	A	1.436e^-5	0.49	INTRON tai
3L	14834405	3L_14834405_SNP [dm3] 3L_14841305_SNP [dm6]	A	G	1.460e^-5	0.49	INTRON CG17839
3L	14410930	3L_14410930_SNP [dm3] 3L_14417830_SNP [dm6]	A	T	1.462e^-5	0.49	INTRON bbg
X	18814756	X_18814756_SNP [dm3] X_18920723_SNP [dm6]	A	G	1.501e^-5	0.494	INTERGENIC
3L	14830782	3L_14830782_SNP [dm3] 3L_14837682_SNP [dm6]	T	A	1.536e^-5	0.494	INTRON CG17839
X	14047902	X_14047902_SNP [dm3] X_14153869_SNP [dm6]	T	A	1.561e^-5	0.494	INTERGENIC
X	11226321	X_11226321_SNP [dm3] X_11332288_SNP [dm6]	T	C	1.580e^-5	0.494	INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9236035	2R_9236035_SNP [dm3] 2R_13348530_SNP [dm6]	C	A	1.621e^-5	0.499	INTRON CR44206
3L	14833359	3L_14833359_DEL [dm3] 3L_14840259_DEL [dm6]	AGAATG	A	1.679e^-5	0.507	INTRON CG17839
2L	19100452	2L_19100452_SNP [dm3] 2L_19100452_SNP [dm6]	C	G	1.703e^-5	0.507	INTRON Lim3
3L	1862051	3L_1862051_SNP [dm3] 3L_1862051_SNP [dm6]	G	A	1.798e^-5	0.527	START_GAINED R UTR_5_PRIME R UPSTREAM R DOWNSTREAM HBS1 INTRON R	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23138844	3R_23138844_SNP [dm3] 3R_27313122_SNP [dm6]	A	C	1.977e^-5	0.528	INTRON CG3339
2R	8005083	2R_8005083_SNP [dm3] 2R_12117578_SNP [dm6]	T	G	1.989e^-5	0.528	NON_SYNONYMOUS_CODING jeb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20938898	X_20938898_SNP [dm3] X_21067871_SNP [dm6]	T	C	1.989e^-5	0.528	UPSTREAM CG32512 INTRON bves
3L	11153710	3L_11153710_SNP [dm3] 3L_11160610_SNP [dm6]	C	G	2.001e^-5	0.528	NON_SYNONYMOUS_CODING CG32082	TF binding site mE1_TFBS_chinmo
3R	22666122	3R_22666122_SNP [dm3] 3R_26840400_SNP [dm6]	G	C	2.003e^-5	0.528	SYNONYMOUS_CODING Tl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23154011	3R_23154011_SNP [dm3] 3R_27328289_SNP [dm6]	A	T	2.004e^-5	0.528	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1839181	3L_1839181_SNP [dm3] 3L_1839181_SNP [dm6]	C	A	2.015e^-5	0.528	INTERGENIC
3L	1865438	3L_1865438_SNP [dm3] 3L_1865438_SNP [dm6]	T	C	2.027e^-5	0.528	UTR_5_PRIME CG12025 UPSTREAM HBS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15762029	2L_15762029_SNP [dm3] 2L_15762029_SNP [dm6]	A	G	2.084e^-5	0.536	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	1839551	3L_1839551_SNP [dm3] 3L_1839551_SNP [dm6]	A	T	2.127e^-5	0.539	DOWNSTREAM Cpr62Bc INTERGENIC
3L	1839669	3L_1839669_SNP [dm3] 3L_1839669_SNP [dm6]	T	G	2.159e^-5	0.539	DOWNSTREAM Cpr62Bc INTERGENIC
3L	5416602	3L_5416602_SNP [dm3] 3L_5423502_SNP [dm6]	T	A	2.184e^-5	0.539	UPSTREAM CG34391 INTERGENIC
2L	4075941	2L_4075941_SNP [dm3] 2L_4075941_SNP [dm6]	A	C	2.212e^-5	0.539	INTRON ed EXON CR44984
3L	6567461	3L_6567461_SNP [dm3] 3L_6574361_SNP [dm6]	T	C	2.320e^-5	0.546	INTRON CG18769 & 1 other
3L	14832735	3L_14832735_SNP [dm3] 3L_14839635_SNP [dm6]	C	T	2.330e^-5	0.546	INTRON CG17839
2R	10708175	2R_10708175_SNP [dm3] 2R_14820670_SNP [dm6]	A	C	2.335e^-5	0.546	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
2R	7562492	2R_7562492_DEL [dm3] 2R_11674987_DEL [dm6]	GCC	G	2.359e^-5	0.546	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2
3L	17046848	3L_17046848_SNP [dm3] 3L_17053748_SNP [dm6]	T	C	2.441e^-5	0.547	INTRON rogdi	TF binding site BDTNP1_TFBS_da
3L	1864497	3L_1864497_SNP [dm3] 3L_1864497_SNP [dm6]	T	G	2.442e^-5	0.547	SYNONYMOUS_CODING HBS1 UPSTREAM CG12025	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19677468	2R_19677468_SNP [dm3] 2R_23789945_SNP [dm6]	A	T	2.452e^-5	0.547	DOWNSTREAM CG15800 INTRON CG9850
2L	4842233	2L_4842233_SNP [dm3] 2L_4842233_SNP [dm6]	T	A	2.507e^-5	0.552	UTR_3_PRIME mxt DOWNSTREAM CG12194 & 1 other
3R	26352892	3R_26352892_SNP [dm3] 3R_30527170_SNP [dm6]	T	C	2.531e^-5	0.552	UPSTREAM jdp INTERGENIC
3L	4242554	3L_4242554_SNP [dm3] 3L_4242554_SNP [dm6]	T	C	2.569e^-5	0.554	UTR_3_PRIME CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25536129	3R_25536129_SNP [dm3] 3R_29710407_SNP [dm6]	T	C	2.714e^-5	0.578	INTERGENIC
X	18815682	X_18815682_SNP [dm3] X_18921649_SNP [dm6]	G	T	2.789e^-5	0.578	INTERGENIC
2L	7029238	2L_7029238_SNP [dm3] 2L_7029238_SNP [dm6]	T	C	2.806e^-5	0.578	DOWNSTREAM CG3476 INTERGENIC
X	10111981	X_10111981_SNP [dm3] X_10217948_SNP [dm6]	A	G	2.808e^-5	0.578	UTR_3_PRIME CG15308 UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
3R	23139265	3R_23139265_SNP [dm3] 3R_27313543_SNP [dm6]	G	T	2.834e^-5	0.578	INTRON CG3339	TF binding site BDTNP1_TFBS_twi
2L	4075814	2L_4075814_SNP [dm3] 2L_4075814_SNP [dm6]	G	A	2.874e^-5	0.58	INTRON ed EXON CR44984
3L	14833193	3L_14833193_SNP [dm3] 3L_14840093_SNP [dm6]	G	T	2.930e^-5	0.585	INTRON CG17839
3R	10283805	3R_10283805_SNP [dm3] 3R_14458083_SNP [dm6]	G	A	3.102e^-5	0.603	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5672405	3L_5672405_SNP [dm3] 3L_5679305_SNP [dm6]	T	C	3.108e^-5	0.603	INTRON sif
3R	26352878	3R_26352878_SNP [dm3] 3R_30527156_SNP [dm6]	T	C	3.127e^-5	0.603	UPSTREAM jdp INTERGENIC
3R	19729714	3R_19729714_SNP [dm3] 3R_23903992_SNP [dm6]	C	A	3.153e^-5	0.603	INTRON sba
2L	5417859	2L_5417859_SNP [dm3] 2L_5417859_SNP [dm6]	T	A	3.252e^-5	0.605	INTERGENIC
3R	26352992	3R_26352992_SNP [dm3] 3R_30527270_SNP [dm6]	T	C	3.254e^-5	0.605	UPSTREAM jdp INTERGENIC
2L	4804180	2L_4804180_SNP [dm3] 2L_4804180_SNP [dm6]	C	T	3.368e^-5	0.605	INTERGENIC
3R	26353012	3R_26353012_SNP [dm3] 3R_30527290_SNP [dm6]	C	T	3.369e^-5	0.605	UPSTREAM jdp DOWNSTREAM CR45552 INTERGENIC
3L	8980611	3L_8980611_SNP [dm3] 3L_8987511_SNP [dm6]	C	A	3.376e^-5	0.605	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	3646532	2R_3646532_SNP [dm3] 2R_7759027_SNP [dm6]	G	T	3.391e^-5	0.605	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_z
3L	11035457	3L_11035457_SNP [dm3] 3L_11042357_SNP [dm6]	T	C	3.406e^-5	0.605	INTRON CG43693	TF binding site mE1_TFBS_HSA
2L	7587993	2L_7587993_SNP [dm3] 2L_7587993_SNP [dm6]	C	T	3.421e^-5	0.605	INTERGENIC
X	13408198	X_13408198_SNP [dm3] X_13514165_SNP [dm6]	G	A	3.614e^-5	0.62	INTRON Neto
3L	8977004	3L_8977004_SNP [dm3] 3L_8983904_SNP [dm6]	T	G	3.626e^-5	0.62	DOWNSTREAM CG13314 INTRON Galk	TF binding site mE1_TFBS_HSA
3R	26352883	3R_26352883_SNP [dm3] 3R_30527161_SNP [dm6]	T	C	3.626e^-5	0.62	UPSTREAM jdp INTERGENIC
2R	7562501	2R_7562501_SNP [dm3] 2R_11674996_SNP [dm6]	A	T	3.677e^-5	0.62	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2
3L	8237821	3L_8237821_SNP [dm3] 3L_8244721_SNP [dm6]	G	A	3.718e^-5	0.62	INTRON Dscam4
3L	1838669	3L_1838669_SNP [dm3] 3L_1838669_SNP [dm6]	A	C	3.744e^-5	0.62	INTERGENIC
2L	1619479	2L_1619479_SNP [dm3] 2L_1619479_SNP [dm6]	A	G	3.749e^-5	0.62	EXON CR44603
2L	1731134	2L_1731134_INS [dm3] 2L_1731134_INS [dm6]	C	CTCC	3.781e^-5	0.62	UTR_3_PRIME CG17652 DOWNSTREAM CG17652 & 1 other	TF binding site mE1_TFBS_cad
X	17624226	X_17624226_SNP [dm3] X_17730193_SNP [dm6]	G	A	3.873e^-5	0.62	INTRON CG42684
2L	16400490	2L_16400490_SNP [dm3] 2L_16400490_SNP [dm6]	C	G	3.912e^-5	0.62	UTR_3_PRIME CG5888
2R	17305947	2R_17305947_SNP [dm3] 2R_21418442_SNP [dm6]	C	A	3.957e^-5	0.62	INTRON Sdc
2R	17232025	2R_17232025_SNP [dm3] 2R_21344520_SNP [dm6]	T	G	3.961e^-5	0.62	INTRON CG15666
3L	8980616	3L_8980616_SNP [dm3] 3L_8987516_SNP [dm6]	A	T	3.964e^-5	0.62	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	18375084	3R_18375084_SNP [dm3] 3R_22549362_SNP [dm6]	G	A	3.969e^-5	0.62	DOWNSTREAM CR44062 INTERGENIC
3L	10705240	3L_10705240_SNP [dm3] 3L_10712140_SNP [dm6]	C	G	4.011e^-5	0.622	INTERGENIC
3L	14833194	3L_14833194_SNP [dm3] 3L_14840094_SNP [dm6]	G	A	4.109e^-5	0.626	INTRON CG17839
3L	13912027	3L_13912027_SNP [dm3] 3L_13918927_SNP [dm6]	A	G	4.196e^-5	0.626	INTRON Rgl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16140295	X_16140295_SNP [dm3] X_16246262_SNP [dm6]	A	T	4.208e^-5	0.626	INTERGENIC
3L	14830590	3L_14830590_SNP [dm3] 3L_14837490_SNP [dm6]	G	A	4.225e^-5	0.626	INTRON CG17839
3L	1862919	3L_1862919_SNP [dm3] 3L_1862919_SNP [dm6]	A	C	4.264e^-5	0.626	UTR_3_PRIME HBS1 UPSTREAM R	TF binding site mE1_TFBS_cad
3L	1864014	3L_1864014_SNP [dm3] 3L_1864014_SNP [dm6]	G	A	4.272e^-5	0.626	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26352336	3R_26352336_SNP [dm3] 3R_30526614_SNP [dm6]	T	G	4.273e^-5	0.626	INTRON jdp
3L	2034262	3L_2034262_SNP [dm3] 3L_2034262_SNP [dm6]	C	A	4.358e^-5	0.63	INTERGENIC
3L	1839479	3L_1839479_SNP [dm3] 3L_1839479_SNP [dm6]	T	C	4.366e^-5	0.63	DOWNSTREAM Cpr62Bc INTERGENIC
3R	10283720	3R_10283720_SNP [dm3] 3R_14457998_SNP [dm6]	C	T	4.410e^-5	0.631	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15629815	3L_15629815_SNP [dm3] 3L_15636715_SNP [dm6]	T	A	4.487e^-5	0.635	INTRON comm3
3L	3358536	3L_3358536_SNP [dm3] 3L_3358536_SNP [dm6]	A	G	4.530e^-5	0.635	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15761464	2L_15761464_SNP [dm3] 2L_15761464_SNP [dm6]	G	A	4.538e^-5	0.635	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	1839496	3L_1839496_SNP [dm3] 3L_1839496_SNP [dm6]	T	A	4.634e^-5	0.644	DOWNSTREAM Cpr62Bc INTERGENIC
2R	17232022	2R_17232022_SNP [dm3] 2R_21344517_SNP [dm6]	C	T	4.733e^-5	0.646	INTRON CG15666
2R	3641035	2R_3641035_SNP [dm3] 2R_7753530_SNP [dm6]	G	A	4.767e^-5	0.646	INTRON CG30497 & 1 other
X	18815622	X_18815622_SNP [dm3] X_18921589_SNP [dm6]	T	C	4.834e^-5	0.646	INTERGENIC
3L	1864812	3L_1864812_SNP [dm3] 3L_1864812_SNP [dm6]	G	C	4.844e^-5	0.646	SYNONYMOUS_CODING HBS1 UPSTREAM CG12025	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14833316	3L_14833316_SNP [dm3] 3L_14840216_SNP [dm6]	T	A	4.918e^-5	0.646	INTRON CG17839
3L	9011015	3L_9011015_SNP [dm3] 3L_9017915_SNP [dm6]	T	C	4.971e^-5	0.646	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16387035	2L_16387035_SNP [dm3] 2L_16387035_SNP [dm6]	G	A	4.977e^-5	0.646	INTERGENIC
X	9203655	X_9203655_SNP [dm3] X_9309622_SNP [dm6]	T	C	4.991e^-5	0.646	INTERGENIC
3L	6573020	3L_6573020_SNP [dm3] 3L_6579920_SNP [dm6]	T	A	5.027e^-5	0.646	INTRON CG18769 & 1 other
3L	1839603	3L_1839603_SNP [dm3] 3L_1839603_SNP [dm6]	A	T	5.048e^-5	0.646	DOWNSTREAM Cpr62Bc INTERGENIC
3L	8980578	3L_8980578_SNP [dm3] 3L_8987478_SNP [dm6]	C	T	5.058e^-5	0.646	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	18007920	2L_18007920_SNP [dm3] 2L_18007920_SNP [dm6]	T	G	5.149e^-5	0.646	UPSTREAM CG42634 & 1 other DOWNSTREAM CG5693 & 1 other INTERGENIC
X	20561847	X_20561847_SNP [dm3] X_20690820_SNP [dm6]	T	C	5.160e^-5	0.646	UTR_5_PRIME run UPSTREAM CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	19601840	3R_19601840_SNP [dm3] 3R_23776118_SNP [dm6]	C	T	5.225e^-5	0.646	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8980546	3L_8980546_SNP [dm3] 3L_8987446_SNP [dm6]	T	C	5.264e^-5	0.646	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9770910	2R_9770910_SNP [dm3] 2R_13883405_SNP [dm6]	A	G	5.269e^-5	0.646	INTRON shot
X	11226294	X_11226294_SNP [dm3] X_11332261_SNP [dm6]	C	T	5.300e^-5	0.646	INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1839487	3L_1839487_SNP [dm3] 3L_1839487_SNP [dm6]	T	A	5.324e^-5	0.646	DOWNSTREAM Cpr62Bc INTERGENIC
3L	5416607	3L_5416607_SNP [dm3] 3L_5423507_SNP [dm6]	C	G	5.335e^-5	0.646	UPSTREAM CG34391 INTERGENIC
3L	8980557	3L_8980557_SNP [dm3] 3L_8987457_SNP [dm6]	T	G	5.335e^-5	0.646	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5053844	X_5053844_SNP [dm3] X_5159811_SNP [dm6]	A	T	5.381e^-5	0.647	INTRON rg & 1 other
3R	7632221	3R_7632221_SNP [dm3] 3R_11806499_SNP [dm6]	G	T	5.607e^-5	0.65	UTR_5_PRIME ClC-a INTRON ClC-a	TF binding site mE1_TFBS_HSA
2L	1619480	2L_1619480_SNP [dm3] 2L_1619480_SNP [dm6]	A	C	5.656e^-5	0.65	EXON CR44603
2L	7029962	2L_7029962_SNP [dm3] 2L_7029962_SNP [dm6]	A	T	5.702e^-5	0.65	DOWNSTREAM Rab30 INTERGENIC
2L	8314930	2L_8314930_SNP [dm3] 2L_8314930_SNP [dm6]	G	A	5.716e^-5	0.65	NON_SYNONYMOUS_CODING CG7806
3L	8980480	3L_8980480_SNP [dm3] 3L_8987380_SNP [dm6]	T	A	5.722e^-5	0.65	SYNONYMOUS_CODING CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8237797	3L_8237797_DEL [dm3] 3L_8244697_DEL [dm6]	ATGCCAGGGAAA...	A	5.754e^-5	0.65	INTRON Dscam4
3L	15629833	3L_15629833_SNP [dm3] 3L_15636733_SNP [dm6]	A	T	5.778e^-5	0.65	INTRON comm3
X	5053855	X_5053855_SNP [dm3] X_5159822_SNP [dm6]	T	A	5.803e^-5	0.65	INTRON rg & 1 other
2R	11143814	2R_11143814_SNP [dm3] 2R_15256309_SNP [dm6]	C	T	5.815e^-5	0.65	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
3L	1938427	3L_1938427_SNP [dm3] 3L_1938427_SNP [dm6]	G	A	5.854e^-5	0.65	DOWNSTREAM CR44536 INTRON CG5687
3L	10620567	3L_10620567_SNP [dm3] 3L_10627467_SNP [dm6]	T	C	5.932e^-5	0.65	DOWNSTREAM CG14151 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3R	23154025	3R_23154025_SNP [dm3] 3R_27328303_SNP [dm6]	G	T	5.985e^-5	0.65	INTERGENIC
3L	13168162	3L_13168162_SNP [dm3] 3L_13175062_SNP [dm6]	T	C	6.025e^-5	0.65	SYNONYMOUS_CODING snky	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9227549	2L_9227549_SNP [dm3] 2L_9227549_SNP [dm6]	A	G	6.053e^-5	0.65	INTRON tai
3R	13689463	3R_13689463_SNP [dm3] 3R_17863741_SNP [dm6]	G	A	6.088e^-5	0.65	INTRON tinc
3L	1841289	3L_1841289_SNP [dm3] 3L_1841289_SNP [dm6]	G	A	6.196e^-5	0.65	INTRON Cpr62Bc
2L	7029244	2L_7029244_SNP [dm3] 2L_7029244_SNP [dm6]	G	A	6.199e^-5	0.65	DOWNSTREAM CG3476 INTERGENIC
X	10111996	X_10111996_SNP [dm3] X_10217963_SNP [dm6]	T	C	6.226e^-5	0.65	UTR_3_PRIME CG15308 UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
3R	23137203	3R_23137203_SNP [dm3] 3R_27311481_SNP [dm6]	C	T	6.228e^-5	0.65	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad
3L	1840375	3L_1840375_SNP [dm3] 3L_1840375_SNP [dm6]	G	A	6.241e^-5	0.65	UTR_3_PRIME Cpr62Bc DOWNSTREAM Cpr62Bc
2R	15769717	2R_15769717_SNP [dm3] 2R_19882212_SNP [dm6]	C	T	6.277e^-5	0.65	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19601831	3R_19601831_SNP [dm3] 3R_23776109_SNP [dm6]	T	C	6.323e^-5	0.65	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26354617	3R_26354617_SNP [dm3] 3R_30528895_SNP [dm6]	A	C	6.364e^-5	0.65	DOWNSTREAM CR45552 INTRON CR45552
2L	2505319	2L_2505319_SNP [dm3] 2L_2505319_SNP [dm6]	G	A	6.454e^-5	0.65	INTERGENIC
3L	8980558	3L_8980558_SNP [dm3] 3L_8987458_SNP [dm6]	T	C	6.557e^-5	0.65	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7562903	2R_7562903_INS [dm3] 2R_11675398_INS [dm6]	T	TC	6.572e^-5	0.65	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7030681	2L_7030681_SNP [dm3] 2L_7030681_SNP [dm6]	G	A	6.575e^-5	0.65	UTR_3_PRIME Rab30 DOWNSTREAM Rab30
2R	9040997	2R_9040997_SNP [dm3] 2R_13153492_SNP [dm6]	A	C	6.620e^-5	0.65	NON_SYNONYMOUS_CODING TppII UPSTREAM Ack-like	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2L	18007762	2L_18007762_SNP [dm3] 2L_18007762_SNP [dm6]	A	T	6.639e^-5	0.65	UTR_3_PRIME CG42659 UPSTREAM CG42634 & 1 other DOWNSTREAM CG5693
X	18814591	X_18814591_SNP [dm3] X_18920558_SNP [dm6]	C	T	6.668e^-5	0.65	INTERGENIC
3L	1839521	3L_1839521_DEL [dm3] 3L_1839521_DEL [dm6]	AA	A	6.688e^-5	0.65	DOWNSTREAM Cpr62Bc INTERGENIC
X	16066990	X_16066990_SNP [dm3] X_16172957_SNP [dm6]	T	A	6.723e^-5	0.65	INTERGENIC
3L	8894602	3L_8894602_SNP [dm3] 3L_8901502_SNP [dm6]	C	T	6.729e^-5	0.65	SYNONYMOUS_CODING TrpA1 INTRON TrpA1
3L	17046857	3L_17046857_SNP [dm3] 3L_17053757_SNP [dm6]	G	A	6.773e^-5	0.65	INTRON rogdi	TF binding site BDTNP1_TFBS_da
X	16212839	X_16212839_SNP [dm3] X_16318806_SNP [dm6]	A	G	6.801e^-5	0.65	INTRON Cyp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15095083	2L_15095083_SNP [dm3] 2L_15095083_SNP [dm6]	G	A	6.829e^-5	0.65	SYNONYMOUS_CODING CG15270
2L	7389594	2L_7389594_SNP [dm3] 2L_7389594_SNP [dm6]	G	A	6.836e^-5	0.65	SYNONYMOUS_CODING gudu
3L	8980580	3L_8980580_SNP [dm3] 3L_8987480_SNP [dm6]	A	C	6.863e^-5	0.65	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1864206	3L_1864206_SNP [dm3] 3L_1864206_SNP [dm6]	G	A	6.877e^-5	0.65	SYNONYMOUS_CODING HBS1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14841937	3L_14841937_SNP [dm3] 3L_14848837_SNP [dm6]	T	C	6.936e^-5	0.65	INTRON CG17839
3R	26684339	3R_26684339_SNP [dm3] 3R_30858617_SNP [dm6]	T	C	6.942e^-5	0.65	INTERGENIC	TF binding site mE1_TFBS_HSA
X	11225811	X_11225811_SNP [dm3] X_11331778_SNP [dm6]	G	A	6.947e^-5	0.65	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8980542	3L_8980542_DEL [dm3] 3L_8987442_DEL [dm6]	TGG	A	6.959e^-5	0.65	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	19601839	3R_19601839_SNP [dm3] 3R_23776117_SNP [dm6]	G	A	6.968e^-5	0.65	SYNONYMOUS_CODING Nup98-96	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1861152	3L_1861152_SNP [dm3] 3L_1861152_SNP [dm6]	T	C	6.969e^-5	0.65	SYNONYMOUS_CODING R	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1862257	3L_1862257_SNP [dm3] 3L_1862257_SNP [dm6]	C	A	7.063e^-5	0.656	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	20437794	X_20437794_SNP [dm3] X_20566767_SNP [dm6]	T	C	7.112e^-5	0.657	UTR_3_PRIME RunxB
2L	7031911	2L_7031911_SNP [dm3] 2L_7031911_SNP [dm6]	G	T	7.143e^-5	0.657	SYNONYMOUS_CODING Rab30 UPSTREAM CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	1839754	3L_1839754_SNP [dm3] 3L_1839754_SNP [dm6]	T	A	7.290e^-5	0.667	DOWNSTREAM Cpr62Bc INTERGENIC
2R	20219744	2R_20219744_SNP [dm3] 2R_24332221_SNP [dm6]	A	G	7.376e^-5	0.672	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14390462	3R_14390462_SNP [dm3] 3R_18564740_SNP [dm6]	A	T	7.422e^-5	0.673	UTR_5_PRIME CG43210 UTR_3_PRIME CG43194
X	16143806	X_16143806_SNP [dm3] X_16249773_SNP [dm6]	G	A	7.609e^-5	0.683	INTERGENIC
2L	20925991	2L_20925991_SNP [dm3] 2L_20925991_SNP [dm6]	T	C	7.613e^-5	0.683	DOWNSTREAM CG9272 INTRON RPA2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19100449	2L_19100449_SNP [dm3] 2L_19100449_SNP [dm6]	A	T	7.697e^-5	0.685	INTRON Lim3
X	11226295	X_11226295_SNP [dm3] X_11332262_SNP [dm6]	T	C	7.707e^-5	0.685	INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14832899	3L_14832899_SNP [dm3] 3L_14839799_SNP [dm6]	T	C	7.803e^-5	0.69	INTRON CG17839
2L	9227370	2L_9227370_SNP [dm3] 2L_9227370_SNP [dm6]	A	C	7.881e^-5	0.694	INTRON tai
3R	12539744	3R_12539744_SNP [dm3] 3R_16714022_SNP [dm6]	G	T	7.947e^-5	0.697	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	785944	3L_785944_SNP [dm3] 3L_785944_SNP [dm6]	T	G	7.994e^-5	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13168071	3L_13168071_SNP [dm3] 3L_13174971_SNP [dm6]	G	A	8.068e^-5	0.698	NON_SYNONYMOUS_CODING snky	TF binding site mE1_TFBS_sens
3L	14834241	3L_14834241_SNP [dm3] 3L_14841141_SNP [dm6]	G	A	8.079e^-5	0.698	INTRON CG17839
3L	802866	3L_802866_SNP [dm3] 3L_802866_SNP [dm6]	T	A	8.176e^-5	0.703	DOWNSTREAM CG13898 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	5673720	3L_5673720_DEL [dm3] 3L_5680620_DEL [dm6]	TT	T	8.205e^-5	0.703	INTRON sif
2L	17894459	2L_17894459_DEL [dm3] 2L_17894459_DEL [dm6]	TG	T	8.293e^-5	0.706	EXON CR43420
3L	8548898	3L_8548898_SNP [dm3] 3L_8555798_SNP [dm6]	A	G	8.319e^-5	0.706	UTR_5_PRIME rhea
X	11226292	X_11226292_SNP [dm3] X_11332259_SNP [dm6]	T	G	8.386e^-5	0.708	INTRON CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1865467	3L_1865467_SNP [dm3] 3L_1865467_SNP [dm6]	T	C	8.457e^-5	0.708	START_GAINED CG12025 UTR_5_PRIME CG12025 UPSTREAM HBS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10267222	X_10267222_SNP [dm3] X_10373189_SNP [dm6]	G	C	8.457e^-5	0.708	NON_SYNONYMOUS_CODING CG32686 INTRON CG17841
3L	785908	3L_785908_SNP [dm3] 3L_785908_SNP [dm6]	A	G	8.565e^-5	0.714	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15312306	X_15312306_SNP [dm3] X_15418273_SNP [dm6]	G	C	8.603e^-5	0.714	INTRON Cngl
3R	18449479	3R_18449479_SNP [dm3] 3R_22623757_SNP [dm6]	C	G	8.747e^-5	0.719	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	15464369	2R_15464369_SNP [dm3] 2R_19576864_SNP [dm6]	C	T	8.772e^-5	0.719	INTRON sm
2L	9224177	2L_9224177_SNP [dm3] 2L_9224177_SNP [dm6]	C	T	8.865e^-5	0.719	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	8178002	2R_8178002_SNP [dm3] 2R_12290497_SNP [dm6]	T	C	8.905e^-5	0.719	UPSTREAM CG42700 INTRON CG42700
X	20244924	X_20244924_SNP [dm3] X_20373897_SNP [dm6]	C	T	8.918e^-5	0.719	INTERGENIC
3L	1863282	3L_1863282_SNP [dm3] 3L_1863282_SNP [dm6]	C	A	9.012e^-5	0.719	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7032639	2L_7032639_DEL [dm3] 2L_7032639_DEL [dm6]	TTCT	T	9.023e^-5	0.719	UPSTREAM CG11266 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	19100448	2L_19100448_SNP [dm3] 2L_19100448_SNP [dm6]	G	T	9.082e^-5	0.719	INTRON Lim3
3L	1856908	3L_1856908_SNP [dm3] 3L_1856908_SNP [dm6]	C	T	9.169e^-5	0.719	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15411544	2R_15411544_SNP [dm3] 2R_19524039_SNP [dm6]	C	T	9.185e^-5	0.719	UTR_3_PRIME sm
3R	16383413	3R_16383413_SNP [dm3] 3R_20557691_SNP [dm6]	G	A	9.228e^-5	0.719	UPSTREAM CG5180 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16383476	3R_16383476_SNP [dm3] 3R_20557754_SNP [dm6]	C	A	9.228e^-5	0.719	UPSTREAM CG5180 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	9436916	X_9436916_SNP [dm3] X_9542883_SNP [dm6]	C	G	9.318e^-5	0.719	INTRON CG32700
3R	23138637	3R_23138637_SNP [dm3] 3R_27312915_SNP [dm6]	G	A	9.331e^-5	0.719	INTRON CG3339
X	18815737	X_18815737_SNP [dm3] X_18921704_SNP [dm6]	G	T	9.452e^-5	0.719	INTERGENIC
2L	1619460	2L_1619460_SNP [dm3] 2L_1619460_SNP [dm6]	T	C	9.490e^-5	0.719	EXON CR44603
3L	2034125	3L_2034125_SNP [dm3] 3L_2034125_SNP [dm6]	C	T	9.506e^-5	0.719	INTERGENIC
3L	3637638	3L_3637638_SNP [dm3] 3L_3637638_SNP [dm6]	A	G	9.512e^-5	0.719	INTRON dar1
3R	18368770	3R_18368770_SNP [dm3] 3R_22543048_SNP [dm6]	T	C	9.516e^-5	0.719	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
3L	16039341	3L_16039341_SNP [dm3] 3L_16046241_SNP [dm6]	G	A	9.560e^-5	0.719	INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1864911	3L_1864911_SNP [dm3] 3L_1864911_SNP [dm6]	C	T	9.564e^-5	0.719	SYNONYMOUS_CODING HBS1 UPSTREAM CG12025	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1839943	3L_1839943_SNP [dm3] 3L_1839943_SNP [dm6]	C	G	9.611e^-5	0.719	DOWNSTREAM Cpr62Bc INTERGENIC
X	5864635	X_5864635_SNP [dm3] X_5970602_SNP [dm6]	T	A	9.620e^-5	0.719	INTRON Grip	TF binding site BDTNP1_TFBS_da
3R	18449699	3R_18449699_SNP [dm3] 3R_22623977_SNP [dm6]	T	C	9.622e^-5	0.719	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	7033081	2L_7033081_SNP [dm3] 2L_7033081_SNP [dm6]	T	C	9.625e^-5	0.719	UPSTREAM Rab30 INTRON CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	9297460	X_9297460_SNP [dm3] X_9403427_SNP [dm6]	C	G	9.657e^-5	0.719	INTRON mgl
3L	1873857	3L_1873857_SNP [dm3] 3L_1873857_SNP [dm6]	G	A	9.698e^-5	0.719	SYNONYMOUS_CODING dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13182448	3L_13182448_SNP [dm3] 3L_13189348_SNP [dm6]	G	C	9.731e^-5	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7820950	3R_7820950_SNP [dm3] 3R_11995228_SNP [dm6]	T	C	9.982e^-5	0.719	INTRON Tk
3L	5418284	3L_5418284_SNP [dm3] 3L_5425184_SNP [dm6]	A	G	9.992e^-5	0.719	INTRON CG34391	TF binding site mE1_TFBS_sbb
3L	6892796	3L_6892796_INS [dm3] 3L_6899696_INS [dm6]	A	AT	1.002e^-4	0.719	INTERGENIC
3L	14833388	3L_14833388_DEL [dm3] 3L_14840288_DEL [dm6]	AA	A	1.003e^-4	0.719	INTRON CG17839
3L	1013548	3L_1013548_SNP [dm3] 3L_1013548_SNP [dm6]	T	C	1.004e^-4	0.719	INTRON trio
3L	16537003	3L_16537003_SNP [dm3] 3L_16543903_SNP [dm6]	C	A	1.007e^-4	0.719	UPSTREAM CG43373 DOWNSTREAM CG13033 INTERGENIC
3R	20323548	3R_20323548_SNP [dm3] 3R_24497826_SNP [dm6]	G	A	1.009e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	8208115	3L_8208115_DEL [dm3] 3L_8215015_DEL [dm6]	GATTA	C	1.011e^-4	0.719	UPSTREAM CG8012 INTERGENIC
3L	14523259	3L_14523259_SNP [dm3] 3L_14530159_SNP [dm6]	C	A	1.011e^-4	0.719	INTRON bbg
3L	13997619	3L_13997619_SNP [dm3] 3L_14004519_SNP [dm6]	C	T	1.016e^-4	0.719	INTRON upSET	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
X	20561926	X_20561926_SNP [dm3] X_20690899_SNP [dm6]	T	C	1.037e^-4	0.719	UTR_5_PRIME run UPSTREAM CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2R	20219860	2R_20219860_SNP [dm3] 2R_24332337_SNP [dm6]	T	C	1.059e^-4	0.719	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5573833	2R_5573833_SNP [dm3] 2R_9686328_SNP [dm6]	A	G	1.060e^-4	0.719	INTERGENIC
2L	10527183	2L_10527183_SNP [dm3] 2L_10527183_SNP [dm6]	A	G	1.066e^-4	0.719	UPSTREAM Lip4 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	12562069	3L_12562069_SNP [dm3] 3L_12568969_SNP [dm6]	A	G	1.068e^-4	0.719	INTRON sowah	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	26408267	3R_26408267_SNP [dm3] 3R_30582545_SNP [dm6]	G	A	1.068e^-4	0.719	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9702	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9222812	2L_9222812_DEL [dm3] 2L_9222812_DEL [dm6]	TGCAACAAC	A	1.071e^-4	0.719	INTRON tai
3L	14833356	3L_14833356_SNP [dm3] 3L_14840256_SNP [dm6]	T	A	1.079e^-4	0.719	INTRON CG17839
2L	20926272	2L_20926272_SNP [dm3] 2L_20926272_SNP [dm6]	T	A	1.080e^-4	0.719	UPSTREAM RPA2 DOWNSTREAM CG9272 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17804658	2L_17804658_SNP [dm3] 2L_17804658_SNP [dm6]	C	G	1.087e^-4	0.719	INTRON CadN2
2L	2505215	2L_2505215_SNP [dm3] 2L_2505215_SNP [dm6]	T	A	1.091e^-4	0.719	INTERGENIC
3L	14333803	3L_14333803_SNP [dm3] 3L_14340703_SNP [dm6]	T	C	1.095e^-4	0.719	INTRON fz	TF binding site mE1_TFBS_inv
3R	20906765	3R_20906765_SNP [dm3] 3R_25081043_SNP [dm6]	A	G	1.097e^-4	0.719	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17647585	2R_17647585_SNP [dm3] 2R_21760080_SNP [dm6]	C	T	1.099e^-4	0.719	INTERGENIC
3L	16072437	3L_16072437_SNP [dm3] 3L_16079337_SNP [dm6]	G	T	1.105e^-4	0.719	UTR_3_PRIME Mbs INTRON Mbs	TF binding site BDTNP1_TFBS_dl
2R	14321047	2R_14321047_SNP [dm3] 2R_18433542_SNP [dm6]	T	G	1.105e^-4	0.719	INTRON CG30118
3L	2073725	3L_2073725_SNP [dm3] 3L_2073725_SNP [dm6]	T	C	1.106e^-4	0.719	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
X	21861301	X_21861301_SNP [dm3] X_22459465_SNP [dm6]	C	T	1.117e^-4	0.719	INTRON CG14619	transposable element FlyBase
3L	1862135	3L_1862135_SNP [dm3] 3L_1862135_SNP [dm6]	T	C	1.120e^-4	0.719	UTR_5_PRIME R UPSTREAM R DOWNSTREAM HBS1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6459932	3R_6459932_SNP [dm3] 3R_10634210_SNP [dm6]	A	G	1.121e^-4	0.719	INTRON hth	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9290045	2L_9290045_INS [dm3] 2L_9290045_INS [dm6]	A	AA	1.122e^-4	0.719	INTRON Ggamma30A
3L	9400634	3L_9400634_SNP [dm3] 3L_9407534_SNP [dm6]	C	T	1.123e^-4	0.719	UTR_3_PRIME CG4022 DOWNSTREAM CG4022
3L	17702044	3L_17702044_SNP [dm3] 3L_17708944_SNP [dm6]	G	A	1.124e^-4	0.719	INTRON Ccn
X	4547282	X_4547282_SNP [dm3] X_4653249_SNP [dm6]	T	C	1.126e^-4	0.719	NON_SYNONYMOUS_CODING CG15473 INTRON Cbp80	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	18368636	3R_18368636_SNP [dm3] 3R_22542914_SNP [dm6]	A	T	1.129e^-4	0.719	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
X	9005288	X_9005288_SNP [dm3] X_9111255_SNP [dm6]	C	A	1.129e^-4	0.719	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17046794	3L_17046794_SNP [dm3] 3L_17053694_SNP [dm6]	A	T	1.130e^-4	0.719	INTRON rogdi	TF binding site BDTNP1_TFBS_da
2R	5930251	2R_5930251_SNP [dm3] 2R_10042746_SNP [dm6]	T	A	1.136e^-4	0.719	NON_SYNONYMOUS_CODING CG34220 INTRON oys
2R	15543348	2R_15543348_SNP [dm3] 2R_19655843_SNP [dm6]	C	T	1.141e^-4	0.719	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	23379843	3R_23379843_SNP [dm3] 3R_27554121_SNP [dm6]	T	C	1.144e^-4	0.719	INTRON Klp98A
3L	8564287	3L_8564287_SNP [dm3] 3L_8571187_SNP [dm6]	A	T	1.158e^-4	0.719	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM mir-190 DOWNSTREAM rhea	TF binding site mE1_TFBS_chinmo
2L	9152452	2L_9152452_SNP [dm3] 2L_9152452_SNP [dm6]	T	A	1.160e^-4	0.719	INTRON CG32982
2L	7029720	2L_7029720_SNP [dm3] 2L_7029720_SNP [dm6]	C	T	1.161e^-4	0.719	DOWNSTREAM CG3476 & 1 other INTERGENIC
3R	7820995	3R_7820995_SNP [dm3] 3R_11995273_SNP [dm6]	C	A	1.166e^-4	0.719	INTRON Tk
X	10111842	X_10111842_DEL [dm3] X_10217809_DEL [dm6]	CGTG	T	1.170e^-4	0.719	UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
3R	13669618	3R_13669618_SNP [dm3] 3R_17843896_SNP [dm6]	T	C	1.171e^-4	0.719	INTRON tinc
3R	26342772	3R_26342772_SNP [dm3] 3R_30517050_SNP [dm6]	A	C	1.171e^-4	0.719	DOWNSTREAM jdp & 1 other INTERGENIC
2R	17230279	2R_17230279_SNP [dm3] 2R_21342774_SNP [dm6]	A	G	1.172e^-4	0.719	SPLICE_SITE_REGION CG15666 DOWNSTREAM dom INTRON CG15666
3L	14834353	3L_14834353_SNP [dm3] 3L_14841253_SNP [dm6]	T	G	1.174e^-4	0.719	INTRON CG17839
2R	8003935	2R_8003935_SNP [dm3] 2R_12116430_SNP [dm6]	T	G	1.175e^-4	0.719	INTRON jeb	TF binding site mE1_TFBS_cad
3L	8212690	3L_8212690_DEL [dm3] 3L_8219590_DEL [dm6]	TT	T	1.177e^-4	0.719	UPSTREAM CG13674 INTERGENIC
3L	649645	3L_649645_SNP [dm3] 3L_649645_SNP [dm6]	G	A	1.178e^-4	0.719	INTRON Gale	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14835526	3L_14835526_SNP [dm3] 3L_14842426_SNP [dm6]	G	A	1.186e^-4	0.719	INTRON CG17839
3R	26352784	3R_26352784_SNP [dm3] 3R_30527062_SNP [dm6]	G	A	1.188e^-4	0.719	UPSTREAM jdp INTERGENIC
2L	20768293	2L_20768293_SNP [dm3] 2L_20768293_SNP [dm6]	A	G	1.191e^-4	0.719	DOWNSTREAM dia INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2599425	2L_2599425_SNP [dm3] 2L_2599425_SNP [dm6]	T	G	1.200e^-4	0.719	INTRON CR44790
3L	485619	3L_485619_SNP [dm3] 3L_485619_SNP [dm6]	C	T	1.202e^-4	0.719	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9641593	3L_9641593_SNP [dm3] 3L_9648493_SNP [dm6]	A	C	1.206e^-4	0.719	INTRON fry & 1 other
3L	1864002	3L_1864002_SNP [dm3] 3L_1864002_SNP [dm6]	C	T	1.213e^-4	0.719	SYNONYMOUS_CODING HBS1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	19557669	2R_19557669_SNP [dm3] 2R_23670146_SNP [dm6]	A	T	1.218e^-4	0.719	NON_SYNONYMOUS_CODING Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7212894	3L_7212894_SNP [dm3] 3L_7219794_SNP [dm6]	C	T	1.220e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7212895	3L_7212895_SNP [dm3] 3L_7219795_SNP [dm6]	A	G	1.220e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13644442	3R_13644442_SNP [dm3] 3R_17818720_SNP [dm6]	C	T	1.222e^-4	0.719	INTRON tinc
2R	3725695	2R_3725695_SNP [dm3] 2R_7838190_SNP [dm6]	T	A	1.225e^-4	0.719	INTRON Dgk	TF binding site mE1_TFBS_chinmo
3R	23719217	3R_23719217_SNP [dm3] 3R_27893495_SNP [dm6]	C	G	1.226e^-4	0.719	INTRON CG34353
3L	1856966	3L_1856966_SNP [dm3] 3L_1856966_SNP [dm6]	G	C	1.227e^-4	0.719	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7064099	2R_7064099_SNP [dm3] 2R_11176594_SNP [dm6]	A	T	1.231e^-4	0.719	INTRON shn
3L	1866110	3L_1866110_SNP [dm3] 3L_1866110_SNP [dm6]	A	G	1.244e^-4	0.724	UPSTREAM HBS1 INTRON CG12025	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	23139250	3R_23139250_SNP [dm3] 3R_27313528_SNP [dm6]	A	G	1.250e^-4	0.725	INTRON CG3339	TF binding site BDTNP1_TFBS_twi
2L	7156887	2L_7156887_INS [dm3] 2L_7156887_INS [dm6]	T	TT	1.255e^-4	0.725	UTR_5_PRIME Pvf3
3L	14833337	3L_14833337_DEL [dm3] 3L_14840237_DEL [dm6]	AA	A	1.257e^-4	0.725	INTRON CG17839
X	10802587	X_10802587_SNP [dm3] X_10908554_SNP [dm6]	G	C	1.263e^-4	0.726	NON_SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_sna
2L	3467094	2L_3467094_SNP [dm3] 2L_3467094_SNP [dm6]	A	T	1.266e^-4	0.726	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	8980524	3L_8980524_SNP [dm3] 3L_8987424_SNP [dm6]	C	T	1.278e^-4	0.728	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	7820947	3R_7820947_SNP [dm3] 3R_11995225_SNP [dm6]	A	G	1.283e^-4	0.728	INTRON Tk
X	11226622	X_11226622_SNP [dm3] X_11332589_SNP [dm6]	C	T	1.289e^-4	0.728	SYNONYMOUS_CODING CG1657	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18815559	X_18815559_DEL [dm3] X_18921526_DEL [dm6]	GCAGCAGTGGGAAATCAAAA...	G	1.293e^-4	0.728	INTERGENIC
2R	14239855	2R_14239855_SNP [dm3] 2R_18352350_SNP [dm6]	T	A	1.295e^-4	0.728	INTRON sbb
2R	14161418	2R_14161418_SNP [dm3] 2R_18273913_SNP [dm6]	T	C	1.295e^-4	0.728	INTERGENIC
2L	4075944	2L_4075944_SNP [dm3] 2L_4075944_SNP [dm6]	G	A	1.299e^-4	0.728	INTRON ed EXON CR44984
3L	2034115	3L_2034115_SNP [dm3] 3L_2034115_SNP [dm6]	G	T	1.304e^-4	0.728	INTERGENIC
3L	1862364	3L_1862364_SNP [dm3] 3L_1862364_SNP [dm6]	C	T	1.305e^-4	0.728	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8012041	2L_8012041_SNP [dm3] 2L_8012041_SNP [dm6]	A	C	1.315e^-4	0.728	UPSTREAM Tg INTRON Tg
3L	908566	3L_908566_SNP [dm3] 3L_908566_SNP [dm6]	C	G	1.334e^-4	0.728	UPSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	15044717	3L_15044717_DEL [dm3] 3L_15051617_DEL [dm6]	AA	A	1.336e^-4	0.728	UPSTREAM CG12310 & 1 other DOWNSTREAM CG13461 INTRON Sytbeta
2L	2380616	2L_2380616_SNP [dm3] 2L_2380616_SNP [dm6]	C	T	1.349e^-4	0.728	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6843286	3L_6843286_SNP [dm3] 3L_6850186_SNP [dm6]	A	G	1.353e^-4	0.728	INTERGENIC
3R	25538341	3R_25538341_SNP [dm3] 3R_29712619_SNP [dm6]	C	G	1.355e^-4	0.728	DOWNSTREAM CR45569 INTERGENIC
3L	11576615	3L_11576615_SNP [dm3] 3L_11583515_SNP [dm6]	G	A	1.356e^-4	0.728	SYNONYMOUS_CODING CG32086 DOWNSTREAM rt
2R	17226637	2R_17226637_SNP [dm3] 2R_21339132_SNP [dm6]	A	G	1.357e^-4	0.728	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	3862987	X_3862987_SNP [dm3] X_3968954_SNP [dm6]	A	C	1.365e^-4	0.728	UPSTREAM CG6428 DOWNSTREAM CG6414 EXON CR45481	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2R	17789442	2R_17789442_SNP [dm3] 2R_21901937_SNP [dm6]	C	T	1.366e^-4	0.728	INTRON Fili
2L	7030116	2L_7030116_SNP [dm3] 2L_7030116_SNP [dm6]	T	C	1.371e^-4	0.728	DOWNSTREAM Rab30 INTERGENIC
3L	13997724	3L_13997724_SNP [dm3] 3L_14004624_SNP [dm6]	C	A	1.372e^-4	0.728	INTRON upSET	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_sens
2L	17890932	2L_17890932_SNP [dm3] 2L_17890932_SNP [dm6]	G	C	1.382e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12808462	X_12808462_SNP [dm3] X_12914429_SNP [dm6]	T	A	1.382e^-4	0.728	UPSTREAM CR45626 INTERGENIC
2L	7014213	2L_7014213_SNP [dm3] 2L_7014213_SNP [dm6]	C	T	1.382e^-4	0.728	SYNONYMOUS_CODING CG43322 DOWNSTREAM ade3	TF binding site mE1_TFBS_sens
2L	7156892	2L_7156892_SNP [dm3] 2L_7156892_SNP [dm6]	G	C	1.383e^-4	0.728	UTR_5_PRIME Pvf3
2L	12553329	2L_12553329_SNP [dm3] 2L_12553329_SNP [dm6]	C	A	1.384e^-4	0.728	INTERGENIC
2L	8657873	2L_8657873_SNP [dm3] 2L_8657873_SNP [dm6]	T	C	1.385e^-4	0.728	INTRON Sema-1a
3R	18812624	3R_18812624_SNP [dm3] 3R_22986902_SNP [dm6]	A	G	1.391e^-4	0.728	SYNONYMOUS_CODING Nha2 UPSTREAM Or94a	TF binding site mE1_TFBS_cad
3L	14830628	3L_14830628_SNP [dm3] 3L_14837528_SNP [dm6]	A	G	1.394e^-4	0.728	INTRON CG17839
2R	19544183	2R_19544183_SNP [dm3] 2R_23656660_SNP [dm6]	A	T	1.396e^-4	0.728	UPSTREAM Pde8 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10620553	3L_10620553_SNP [dm3] 3L_10627453_SNP [dm6]	T	A	1.420e^-4	0.728	DOWNSTREAM CG14151 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	7637861	2L_7637861_SNP [dm3] 2L_7637861_SNP [dm6]	G	T	1.420e^-4	0.728	DOWNSTREAM CR44800 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	4804222	2L_4804222_SNP [dm3] 2L_4804222_SNP [dm6]	G	A	1.423e^-4	0.728	INTERGENIC
3L	1838189	3L_1838189_SNP [dm3] 3L_1838189_SNP [dm6]	T	C	1.426e^-4	0.728	INTERGENIC
3L	1356832	3L_1356832_SNP [dm3] 3L_1356832_SNP [dm6]	G	A	1.427e^-4	0.728	INTRON Ptp61F
2R	20217492	2R_20217492_SNP [dm3] 2R_24329969_SNP [dm6]	C	G	1.431e^-4	0.728	INTRON CR44810	TF binding site mE1_TFBS_Trl
3R	10280178	3R_10280178_SNP [dm3] 3R_14454456_SNP [dm6]	A	G	1.432e^-4	0.728	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11025009	3L_11025009_SNP [dm3] 3L_11031909_SNP [dm6]	T	C	1.436e^-4	0.728	INTERGENIC
3L	1862247	3L_1862247_SNP [dm3] 3L_1862247_SNP [dm6]	A	T	1.443e^-4	0.728	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1840930	3L_1840930_SNP [dm3] 3L_1840930_SNP [dm6]	G	A	1.454e^-4	0.728	SYNONYMOUS_CODING Cpr62Bc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8155752	3L_8155752_SNP [dm3] 3L_8162652_SNP [dm6]	T	G	1.455e^-4	0.728	INTRON CG13675
3R	13669647	3R_13669647_SNP [dm3] 3R_17843925_SNP [dm6]	A	T	1.457e^-4	0.728	INTRON tinc
3R	26352848	3R_26352848_SNP [dm3] 3R_30527126_SNP [dm6]	G	C	1.457e^-4	0.728	UPSTREAM jdp INTERGENIC
X	16750009	X_16750009_SNP [dm3] X_16855976_SNP [dm6]	A	T	1.458e^-4	0.728	INTRON CG13003
X	5053861	X_5053861_SNP [dm3] X_5159828_SNP [dm6]	C	T	1.459e^-4	0.728	INTRON rg & 1 other
3R	16521629	3R_16521629_INS [dm3] 3R_20695907_INS [dm6]	A	ACATA	1.460e^-4	0.728	INTRON Oamb
2L	2333923	2L_2333923_SNP [dm3] 2L_2333923_SNP [dm6]	G	T	1.461e^-4	0.728	INTRON CG9967 & 1 other
3R	26677920	3R_26677920_SNP [dm3] 3R_30852198_SNP [dm6]	G	A	1.462e^-4	0.728	UPSTREAM tll INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	2282419	3L_2282419_SNP [dm3] 3L_2282419_SNP [dm6]	A	T	1.463e^-4	0.728	UPSTREAM MsR2 INTERGENIC	TF binding site mE1_TFBS_Kr
X	6503150	X_6503150_INS [dm3] X_6609117_INS [dm6]	C	CC	1.464e^-4	0.728	INTRON pigs
X	16142664	X_16142664_SNP [dm3] X_16248631_SNP [dm6]	C	T	1.468e^-4	0.729	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18013772	2L_18013772_SNP [dm3] 2L_18013772_SNP [dm6]	A	T	1.482e^-4	0.734	INTRON rdo	regulatory region REDfly_CRMs
X	8658801	X_8658801_DEL [dm3] X_8764768_DEL [dm6]	AAAA	A	1.487e^-4	0.734	INTRON Lim1
3L	1862248	3L_1862248_SNP [dm3] 3L_1862248_SNP [dm6]	C	T	1.499e^-4	0.735	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	5423734	3L_5423734_SNP [dm3] 3L_5430634_SNP [dm6]	G	A	1.501e^-4	0.735	INTRON CG34391
3L	1873854	3L_1873854_SNP [dm3] 3L_1873854_SNP [dm6]	T	C	1.502e^-4	0.735	SYNONYMOUS_CODING dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11622482	2L_11622482_SNP [dm3] 2L_11622482_SNP [dm6]	C	T	1.508e^-4	0.736	SYNONYMOUS_CODING kek2	TF binding site mE1_TFBS_chinmo
3R	18449693	3R_18449693_SNP [dm3] 3R_22623971_SNP [dm6]	G	A	1.511e^-4	0.736	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	18378438	3L_18378438_SNP [dm3] 3L_18385338_SNP [dm6]	G	T	1.531e^-4	0.743	INTERGENIC
2L	7602671	2L_7602671_SNP [dm3] 2L_7602671_SNP [dm6]	G	T	1.537e^-4	0.743	INTERGENIC
2L	10084314	2L_10084314_SNP [dm3] 2L_10084314_SNP [dm6]	A	T	1.544e^-4	0.743	INTRON CG44153
2R	5359875	2R_5359875_SNP [dm3] 2R_9472370_SNP [dm6]	A	G	1.553e^-4	0.743	SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_cad
3L	14834349	3L_14834349_SNP [dm3] 3L_14841249_SNP [dm6]	T	C	1.556e^-4	0.743	INTRON CG17839
2L	10873626	2L_10873626_SNP [dm3] 2L_10873626_SNP [dm6]	T	A	1.556e^-4	0.743	INTERGENIC
X	8347549	X_8347549_SNP [dm3] X_8453516_SNP [dm6]	A	G	1.556e^-4	0.743	INTRON org-1
3R	18197900	3R_18197900_SNP [dm3] 3R_22372178_SNP [dm6]	G	T	1.557e^-4	0.743	UPSTREAM CG7069 INTRON PyK	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	12947383	3L_12947383_SNP [dm3] 3L_12954283_SNP [dm6]	G	T	1.563e^-4	0.744	SYNONYMOUS_CODING CG10752	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6376896	3L_6376896_SNP [dm3] 3L_6383796_SNP [dm6]	G	A	1.586e^-4	0.752	INTERGENIC
2R	6029062	2R_6029062_SNP [dm3] 2R_10141557_SNP [dm6]	C	G	1.590e^-4	0.752	NON_SYNONYMOUS_CODING Or46a UPSTREAM CR43467 & 1 other INTRON Or46a EXON CR43467	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8504615	2L_8504615_SNP [dm3] 2L_8504615_SNP [dm6]	C	T	1.593e^-4	0.752	INTRON Dh31
3L	13233402	3L_13233402_SNP [dm3] 3L_13240302_SNP [dm6]	G	A	1.595e^-4	0.752	INTRON caps
3L	14000092	3L_14000092_INS [dm3] 3L_14006992_INS [dm6]	T	TCTT	1.606e^-4	0.753	INTRON upSET	TF binding site mE1_TFBS_inv
3R	21344650	3R_21344650_SNP [dm3] 3R_25518928_SNP [dm6]	T	A	1.608e^-4	0.753	INTRON msi	TF binding site mE1_TFBS_Trl
2L	2491441	2L_2491441_SNP [dm3] 2L_2491441_SNP [dm6]	T	C	1.612e^-4	0.753	SPLICE_SITE_REGION Slh SYNONYMOUS_CODING Slh	enhancer FlyBase TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8380426	2L_8380426_SNP [dm3] 2L_8380426_SNP [dm6]	A	T	1.617e^-4	0.753	INTRON Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12617521	3L_12617521_SNP [dm3] 3L_12624421_SNP [dm6]	C	A	1.624e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12280318	2L_12280318_SNP [dm3] 2L_12280318_SNP [dm6]	G	A	1.624e^-4	0.753	INTRON aret
2R	17903096	2R_17903096_SNP [dm3] 2R_22015591_SNP [dm6]	A	T	1.625e^-4	0.753	INTRON CG34370
3L	1856219	3L_1856219_SNP [dm3] 3L_1856219_SNP [dm6]	T	G	1.634e^-4	0.753	UPSTREAM CG13936 & 1 other INTERGENIC
X	15312253	X_15312253_INS [dm3] X_15418220_INS [dm6]	T	TTT	1.634e^-4	0.753	INTRON Cngl
3R	21362204	3R_21362204_SNP [dm3] 3R_25536482_SNP [dm6]	A	T	1.638e^-4	0.753	INTRON msi
X	15312248	X_15312248_SNP [dm3] X_15418215_SNP [dm6]	C	A	1.653e^-4	0.755	INTRON Cngl
2R	19243852	2R_19243852_DEL [dm3] 2R_23356329_DEL [dm6]	CAATTGGTTACAGTTCCACT...	C	1.654e^-4	0.755	UTR_3_PRIME Rpi DOWNSTREAM CG3500 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	11255509	2R_11255509_SNP [dm3] 2R_15368004_SNP [dm6]	A	T	1.658e^-4	0.755	UTR_3_PRIME unc-5 DOWNSTREAM Pms2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	4831187	2L_4831187_SNP [dm3] 2L_4831187_SNP [dm6]	G	A	1.666e^-4	0.755	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25588262	3R_25588262_SNP [dm3] 3R_29762540_SNP [dm6]	G	A	1.668e^-4	0.755	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13280498	2L_13280498_SNP [dm3] 2L_13280498_SNP [dm6]	C	A	1.671e^-4	0.755	SYNONYMOUS_CODING CG44085 INTRON CG44085
3L	15629831	3L_15629831_INS [dm3] 3L_15636731_INS [dm6]	T	TC	1.672e^-4	0.755	INTRON comm3
3L	10629755	3L_10629755_SNP [dm3] 3L_10636655_SNP [dm6]	A	C	1.680e^-4	0.755	SYNONYMOUS_CODING E_z_	TF binding site mE1_TFBS_sens
2L	9222778	2L_9222778_SNP [dm3] 2L_9222778_SNP [dm6]	C	G	1.684e^-4	0.755	INTRON tai
3L	11306882	3L_11306882_SNP [dm3] 3L_11313782_SNP [dm6]	G	A	1.686e^-4	0.755	DOWNSTREAM CG7573 INTERGENIC
2R	8005061	2R_8005061_SNP [dm3] 2R_12117556_SNP [dm6]	A	G	1.689e^-4	0.755	SYNONYMOUS_CODING jeb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2034082	3L_2034082_SNP [dm3] 3L_2034082_SNP [dm6]	A	C	1.690e^-4	0.755	INTERGENIC
X	15138304	X_15138304_SNP [dm3] X_15244271_SNP [dm6]	A	C	1.694e^-4	0.755	SYNONYMOUS_CODING PPYR1	TF binding site mE1_TFBS_HSA
2R	16071496	2R_16071496_SNP [dm3] 2R_20183991_SNP [dm6]	C	A	1.711e^-4	0.76	INTERGENIC
2L	9222845	2L_9222845_SNP [dm3] 2L_9222845_SNP [dm6]	C	T	1.727e^-4	0.766	INTRON tai
X	11523917	X_11523917_INS [dm3] X_11629884_INS [dm6]	C	CAGAGGATGTGCTC...	1.732e^-4	0.766	INTRON Ptp10D
3L	8499842	3L_8499842_SNP [dm3] 3L_8506742_SNP [dm6]	G	C	1.750e^-4	0.77	DOWNSTREAM ZC3H3 INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14390370	3R_14390370_SNP [dm3] 3R_18564648_SNP [dm6]	G	A	1.760e^-4	0.77	SYNONYMOUS_CODING CG43210 UTR_3_PRIME CG43194
3L	13911993	3L_13911993_SNP [dm3] 3L_13918893_SNP [dm6]	A	C	1.764e^-4	0.77	INTRON Rgl	TF binding site mE1_TFBS_Trl
3L	4633979	3L_4633979_SNP [dm3] 3L_4633979_SNP [dm6]	A	T	1.766e^-4	0.77	DOWNSTREAM CG13716 INTRON axo
2R	17139345	2R_17139345_SNP [dm3] 2R_21251840_SNP [dm6]	A	G	1.771e^-4	0.77	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
2L	7013682	2L_7013682_SNP [dm3] 2L_7013682_SNP [dm6]	A	G	1.773e^-4	0.77	SYNONYMOUS_CODING CG43322 DOWNSTREAM CG43321 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	12452948	2L_12452948_SNP [dm3] 2L_12452948_SNP [dm6]	G	A	1.774e^-4	0.77	UPSTREAM CR17024 DOWNSTREAM Oatp33Eb INTRON CG5418	TF binding site mE1_TFBS_cad
2R	17987191	2R_17987191_SNP [dm3] 2R_22099686_SNP [dm6]	T	C	1.776e^-4	0.77	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4749270	3R_4749270_SNP [dm3] 3R_8923548_SNP [dm6]	G	T	1.777e^-4	0.77	INTRON pyd
3R	15102124	3R_15102124_SNP [dm3] 3R_19276402_SNP [dm6]	G	A	1.787e^-4	0.772	INTERGENIC
2L	2599430	2L_2599430_SNP [dm3] 2L_2599430_SNP [dm6]	G	T	1.796e^-4	0.772	INTRON CR44790
2R	13150168	2R_13150168_SNP [dm3] 2R_17262663_SNP [dm6]	C	G	1.799e^-4	0.772	UTR_5_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8898158	3L_8898158_SNP [dm3] 3L_8905058_SNP [dm6]	C	G	1.803e^-4	0.772	UPSTREAM TrpA1 DOWNSTREAM mfr INTERGENIC
2L	18806266	2L_18806266_SNP [dm3] 2L_18806266_SNP [dm6]	A	T	1.817e^-4	0.772	UPSTREAM CG43814 & 1 other INTERGENIC
3L	6454921	3L_6454921_SNP [dm3] 3L_6461821_SNP [dm6]	T	C	1.819e^-4	0.772	SYNONYMOUS_CODING CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	735632	2L_735632_SNP [dm3] 2L_735632_SNP [dm6]	G	A	1.821e^-4	0.772	INTERGENIC
2L	10342746	2L_10342746_SNP [dm3] 2L_10342746_SNP [dm6]	A	G	1.822e^-4	0.772	UTR_5_PRIME Sps2 DOWNSTREAM CG31715	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Ubx
2R	19243937	2R_19243937_SNP [dm3] 2R_23356414_SNP [dm6]	A	G	1.825e^-4	0.772	UTR_3_PRIME Rpi & 1 other DOWNSTREAM Rpi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	1841425	3L_1841425_SNP [dm3] 3L_1841425_SNP [dm6]	T	C	1.826e^-4	0.772	INTRON Cpr62Bc
3R	4912291	3R_4912291_SNP [dm3] 3R_9086569_SNP [dm6]	C	A	1.833e^-4	0.772	INTRON pum
X	9051509	X_9051509_SNP [dm3] X_9157476_SNP [dm6]	T	C	1.837e^-4	0.772	SYNONYMOUS_CODING Ost48 UPSTREAM His3.3B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9770824	2R_9770824_SNP [dm3] 2R_13883319_SNP [dm6]	T	C	1.841e^-4	0.772	INTRON shot
X	10111849	X_10111849_INS [dm3] X_10217816_INS [dm6]	A	AG	1.848e^-4	0.772	UPSTREAM CR45629 DOWNSTREAM CG15308 & 1 other INTRON CR45629
2L	7179696	2L_7179696_SNP [dm3] 2L_7179696_SNP [dm6]	G	C	1.856e^-4	0.772	INTERGENIC
3L	6566170	3L_6566170_SNP [dm3] 3L_6573070_SNP [dm6]	G	A	1.856e^-4	0.772	INTRON CG18769 & 1 other
3L	11306951	3L_11306951_SNP [dm3] 3L_11313851_SNP [dm6]	G	T	1.857e^-4	0.772	DOWNSTREAM CG7573 INTERGENIC
2L	12333291	2L_12333291_SNP [dm3] 2L_12333291_SNP [dm6]	T	C	1.866e^-4	0.772	INTERGENIC
2L	15135436	2L_15135436_SNP [dm3] 2L_15135436_SNP [dm6]	G	A	1.885e^-4	0.772	INTERGENIC
2R	2413522	2R_2413522_SNP [dm3] 2R_6526017_SNP [dm6]	C	T	1.885e^-4	0.772	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
X	5437356	X_5437356_SNP [dm3] X_5543323_SNP [dm6]	A	T	1.904e^-4	0.772	INTRON Vsx2
3L	8980521	3L_8980521_SNP [dm3] 3L_8987421_SNP [dm6]	T	C	1.906e^-4	0.772	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	24159246	3R_24159246_SNP [dm3] 3R_28333524_SNP [dm6]	C	T	1.908e^-4	0.772	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	5603822	2R_5603822_SNP [dm3] 2R_9716317_SNP [dm6]	T	C	1.910e^-4	0.772	DOWNSTREAM sqa & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	8011933	2L_8011933_DEL [dm3] 2L_8011933_DEL [dm6]	TAATTCGAC	T	1.917e^-4	0.772	UPSTREAM Tg INTRON Tg
X	18814661	X_18814661_SNP [dm3] X_18920628_SNP [dm6]	T	G	1.921e^-4	0.772	INTERGENIC
3R	19729740	3R_19729740_SNP [dm3] 3R_23904018_SNP [dm6]	A	G	1.931e^-4	0.772	INTRON sba
3L	11032341	3L_11032341_SNP [dm3] 3L_11039241_SNP [dm6]	G	A	1.933e^-4	0.772	INTRON CG43693
3R	13738230	3R_13738230_SNP [dm3] 3R_17912508_SNP [dm6]	C	T	1.934e^-4	0.772	DOWNSTREAM CG43445 INTRON Rim
2L	8504277	2L_8504277_SNP [dm3] 2L_8504277_SNP [dm6]	C	A	1.939e^-4	0.772	INTRON Dh31
3L	8980522	3L_8980522_SNP [dm3] 3L_8987422_SNP [dm6]	C	T	1.943e^-4	0.772	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	13381631	X_13381631_SNP [dm3] X_13487598_SNP [dm6]	C	T	1.947e^-4	0.772	INTRON Neto
X	6605837	X_6605837_SNP [dm3] X_6711804_SNP [dm6]	G	T	1.949e^-4	0.772	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	9684126	3R_9684126_SNP [dm3] 3R_13858404_SNP [dm6]	C	T	1.950e^-4	0.772	INTERGENIC
3L	1865490	3L_1865490_DEL [dm3] 3L_1865490_DEL [dm6]	TT	T	1.953e^-4	0.772	UTR_5_PRIME CG12025 UPSTREAM HBS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	13233383	3L_13233383_DEL [dm3] 3L_13240283_DEL [dm6]	TAAATTTCCGCTGTTTA...	C	1.953e^-4	0.772	INTRON caps
3R	23281550	3R_23281550_SNP [dm3] 3R_27455828_SNP [dm6]	T	C	1.953e^-4	0.772	INTERGENIC
3R	14620787	3R_14620787_SNP [dm3] 3R_18795065_SNP [dm6]	G	A	1.955e^-4	0.772	START_GAINED CG7720 UTR_5_PRIME CG7720	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7086355	2L_7086355_SNP [dm3] 2L_7086355_SNP [dm6]	G	A	1.958e^-4	0.772	INTERGENIC
3L	6291698	3L_6291698_SNP [dm3] 3L_6298598_SNP [dm6]	C	T	1.960e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8237879	3L_8237879_SNP [dm3] 3L_8244779_SNP [dm6]	C	T	1.967e^-4	0.772	INTRON Dscam4
2R	14266070	2R_14266070_SNP [dm3] 2R_18378565_SNP [dm6]	C	A	1.968e^-4	0.772	DOWNSTREAM CR42736 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26354640	3R_26354640_DEL [dm3] 3R_30528918_DEL [dm6]	GG	G	1.975e^-4	0.772	DOWNSTREAM CR45552 INTRON CR45552
3L	7836432	3L_7836432_SNP [dm3] 3L_7843332_SNP [dm6]	C	G	1.979e^-4	0.772	INTRON Pdp1	regulatory region REDfly_CRMs
2L	7013674	2L_7013674_SNP [dm3] 2L_7013674_SNP [dm6]	G	A	1.979e^-4	0.772	NON_SYNONYMOUS_CODING CG43322 DOWNSTREAM CG43321 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Ubx
3L	4351650	3L_4351650_SNP [dm3] 3L_4351650_SNP [dm6]	A	C	1.984e^-4	0.772	INTRON Cip4
3L	2711004	3L_2711004_SNP [dm3] 3L_2711004_SNP [dm6]	A	G	1.986e^-4	0.772	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11035444	3L_11035444_SNP [dm3] 3L_11042344_SNP [dm6]	G	T	1.996e^-4	0.772	INTRON CG43693	TF binding site mE1_TFBS_HSA
3L	1862819	3L_1862819_SNP [dm3] 3L_1862819_SNP [dm6]	A	C	2.004e^-4	0.772	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18378414	3L_18378414_SNP [dm3] 3L_18385314_SNP [dm6]	T	G	2.008e^-4	0.772	INTERGENIC
2R	20217090	2R_20217090_SNP [dm3] 2R_24329567_SNP [dm6]	G	A	2.013e^-4	0.772	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3L	9666620	3L_9666620_SNP [dm3] 3L_9673520_SNP [dm6]	G	A	2.016e^-4	0.772	INTRON fry
2R	16453147	2R_16453147_SNP [dm3] 2R_20565642_SNP [dm6]	A	G	2.017e^-4	0.772	INTRON qsm
3R	22412764	3R_22412764_SNP [dm3] 3R_26587042_SNP [dm6]	T	A	2.020e^-4	0.772	UTR_3_PRIME scrib INTRON scrib
3L	15037505	3L_15037505_SNP [dm3] 3L_15044405_SNP [dm6]	C	T	2.031e^-4	0.772	UPSTREAM ind INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	18816250	X_18816250_INS [dm3] X_18922217_INS [dm6]	T	TA	2.033e^-4	0.772	INTERGENIC
3R	23022795	3R_23022795_SNP [dm3] 3R_27197073_SNP [dm6]	G	A	2.036e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	1013542	3L_1013542_SNP [dm3] 3L_1013542_SNP [dm6]	T	A	2.044e^-4	0.772	INTRON trio
3L	5423732	3L_5423732_SNP [dm3] 3L_5430632_SNP [dm6]	T	C	2.047e^-4	0.772	INTRON CG34391
2R	17007448	2R_17007448_SNP [dm3] 2R_21119943_SNP [dm6]	T	A	2.049e^-4	0.772	SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11024999	3L_11024999_SNP [dm3] 3L_11031899_SNP [dm6]	T	A	2.053e^-4	0.772	INTERGENIC
2R	16658621	2R_16658621_INS [dm3] 2R_20771116_INS [dm6]	A	AA	2.064e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1028528	2L_1028528_SNP [dm3] 2L_1028528_SNP [dm6]	T	G	2.075e^-4	0.772	INTRON IA-2
X	9050563	X_9050563_SNP [dm3] X_9156530_SNP [dm6]	T	C	2.077e^-4	0.772	UPSTREAM His3.3B DOWNSTREAM Ost48 INTRON His3.3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3L	10623622	3L_10623622_SNP [dm3] 3L_10630522_SNP [dm6]	G	T	2.087e^-4	0.772	UPSTREAM CG42536 & 2 others INTRON CG42535	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
3L	13177946	3L_13177946_SNP [dm3] 3L_13184846_SNP [dm6]	G	C	2.090e^-4	0.772	INTERGENIC
3L	14832763	3L_14832763_SNP [dm3] 3L_14839663_SNP [dm6]	G	A	2.090e^-4	0.772	INTRON CG17839
3L	9399432	3L_9399432_SNP [dm3] 3L_9406332_SNP [dm6]	A	T	2.097e^-4	0.772	UTR_3_PRIME CG4022 DOWNSTREAM Cpr67B
3L	8776048	3L_8776048_DEL [dm3] 3L_8782948_DEL [dm6]	TAA	T	2.109e^-4	0.772	INTRON Fhos
2L	13949215	2L_13949215_SNP [dm3] 2L_13949215_SNP [dm6]	T	A	2.115e^-4	0.772	INTRON Ance-3
2R	13161595	2R_13161595_SNP [dm3] 2R_17274090_SNP [dm6]	A	T	2.117e^-4	0.772	INTRON mbl
3R	26270067	3R_26270067_SNP [dm3] 3R_30444345_SNP [dm6]	A	G	2.117e^-4	0.772	UPSTREAM CG15537 INTRON Osi23
2R	14026447	2R_14026447_SNP [dm3] 2R_18138942_SNP [dm6]	T	C	2.120e^-4	0.772	SYNONYMOUS_CODING Pcl
3R	25562774	3R_25562774_SNP [dm3] 3R_29737052_SNP [dm6]	T	C	2.121e^-4	0.772	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20926311	2L_20926311_SNP [dm3] 2L_20926311_SNP [dm6]	T	G	2.121e^-4	0.772	UPSTREAM RPA2 DOWNSTREAM CG9272 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7199087	2L_7199087_SNP [dm3] 2L_7199087_SNP [dm6]	C	T	2.125e^-4	0.772	INTRON CG4502
3L	21282407	3L_21282407_SNP [dm3] 3L_21289307_SNP [dm6]	A	C	2.128e^-4	0.772	SYNONYMOUS_CODING pzg	TF binding site mE1_TFBS_chinmo
3R	18449702	3R_18449702_SNP [dm3] 3R_22623980_SNP [dm6]	A	T	2.132e^-4	0.772	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	1125814	3L_1125814_SNP [dm3] 3L_1125814_SNP [dm6]	T	A	2.135e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs
2R	5977051	2R_5977051_SNP [dm3] 2R_10089546_SNP [dm6]	T	C	2.141e^-4	0.772	INTRON CG2269
3R	23138685	3R_23138685_SNP [dm3] 3R_27312963_SNP [dm6]	C	T	2.146e^-4	0.772	INTRON CG3339
2R	17457557	2R_17457557_SNP [dm3] 2R_21570052_SNP [dm6]	C	T	2.148e^-4	0.772	INTRON CG10440
X	9462643	X_9462643_SNP [dm3] X_9568610_SNP [dm6]	T	A	2.150e^-4	0.772	INTRON Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	905814	3L_905814_SNP [dm3] 3L_905814_SNP [dm6]	C	G	2.159e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16522258	3R_16522258_SNP [dm3] 3R_20696536_SNP [dm6]	T	A	2.167e^-4	0.772	INTRON Oamb
2L	7602672	2L_7602672_SNP [dm3] 2L_7602672_SNP [dm6]	T	A	2.171e^-4	0.772	INTERGENIC
2L	14489538	2L_14489538_SNP [dm3] 2L_14489538_SNP [dm6]	G	A	2.173e^-4	0.772	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16522090	3R_16522090_INS [dm3] 3R_20696368_INS [dm6]	G	GAGAGAAAAG	2.190e^-4	0.772	INTRON Oamb
3L	10712694	3L_10712694_SNP [dm3] 3L_10719594_SNP [dm6]	T	A	2.191e^-4	0.772	INTERGENIC
3R	26354577	3R_26354577_INS [dm3] 3R_30528855_INS [dm6]	AA	CCATATGTT	2.191e^-4	0.772	DOWNSTREAM CR45552 INTRON CR45552
2L	10871948	2L_10871948_INS [dm3] 2L_10871948_INS [dm6]	T	TT	2.197e^-4	0.772	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
3L	8224782	3L_8224782_SNP [dm3] 3L_8231682_SNP [dm6]	G	T	2.199e^-4	0.772	DOWNSTREAM CG7213 EXON CR43953
2R	14839987	2R_14839987_SNP [dm3] 2R_18952482_SNP [dm6]	G	A	2.213e^-4	0.772	INTRON sano
3L	16666944	3L_16666944_SNP [dm3] 3L_16673844_SNP [dm6]	T	C	2.215e^-4	0.772	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
X	8435289	X_8435289_SNP [dm3] X_8541256_SNP [dm6]	A	T	2.217e^-4	0.772	INTRON Nrg
2L	9225050	2L_9225050_SNP [dm3] 2L_9225050_SNP [dm6]	G	T	2.218e^-4	0.772	INTRON tai	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
2R	11255851	2R_11255851_SNP [dm3] 2R_15368346_SNP [dm6]	G	C	2.222e^-4	0.772	NON_SYNONYMOUS_CODING Pms2 DOWNSTREAM unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18189995	3R_18189995_SNP [dm3] 3R_22364273_SNP [dm6]	T	C	2.225e^-4	0.772	SYNONYMOUS_CODING CG7071 UTR_3_PRIME Muted DOWNSTREAM CG5382	TF binding site mE1_TFBS_sens
X	22275993	X_22275993_SNP [dm3] X_22874157_SNP [dm6]	G	A	2.226e^-4	0.772	NON_SYNONYMOUS_CODING CG34334 INTRON CG42346	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16167183	2R_16167183_SNP [dm3] 2R_20279678_SNP [dm6]	G	A	2.227e^-4	0.772	SYNONYMOUS_CODING CG9090 UPSTREAM CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6567577	3L_6567577_SNP [dm3] 3L_6574477_SNP [dm6]	T	C	2.228e^-4	0.772	INTRON CG18769 & 1 other
2R	17240129	2R_17240129_SNP [dm3] 2R_21352624_SNP [dm6]	C	A	2.233e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2034098	3L_2034098_SNP [dm3] 3L_2034098_SNP [dm6]	T	A	2.240e^-4	0.772	INTERGENIC
2L	12289625	2L_12289625_SNP [dm3] 2L_12289625_SNP [dm6]	A	G	2.241e^-4	0.772	INTRON aret
3R	7627299	3R_7627299_DEL [dm3] 3R_11801577_DEL [dm6]	AA	A	2.248e^-4	0.772	INTRON ClC-a
3L	14841819	3L_14841819_DEL [dm3] 3L_14848719_DEL [dm6]	CT	C	2.257e^-4	0.772	INTRON CG17839	TF binding site mE1_TFBS_HSA
3L	14362115	3L_14362115_SNP [dm3] 3L_14369015_SNP [dm6]	T	C	2.260e^-4	0.772	UTR_3_PRIME CG13481 DOWNSTREAM fz
X	18446608	X_18446608_SNP [dm3] X_18552575_SNP [dm6]	G	T	2.270e^-4	0.772	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2439920	2R_2439920_SNP [dm3] 2R_6552415_SNP [dm6]	G	A	2.274e^-4	0.772	INTRON jing
2L	7602585	2L_7602585_SNP [dm3] 2L_7602585_SNP [dm6]	G	C	2.289e^-4	0.772	INTERGENIC
2L	10342770	2L_10342770_SNP [dm3] 2L_10342770_SNP [dm6]	C	A	2.291e^-4	0.772	SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Ubx
3R	24218714	3R_24218714_INS [dm3] 3R_28392992_INS [dm6]	T	TT	2.292e^-4	0.772	INTERGENIC
3L	468333	3L_468333_SNP [dm3] 3L_468333_SNP [dm6]	T	G	2.295e^-4	0.772	INTRON klar
3L	4057844	3L_4057844_SNP [dm3] 3L_4057844_SNP [dm6]	T	C	2.297e^-4	0.772	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7607507	2R_7607507_SNP [dm3] 2R_11720002_SNP [dm6]	T	C	2.300e^-4	0.772	INTRON pyr
3R	2012649	3R_2012649_SNP [dm3] 3R_6186927_SNP [dm6]	A	G	2.306e^-4	0.772	UPSTREAM NPFR INTERGENIC
X	21861423	X_21861423_INS [dm3] X_22459587_INS [dm6]	T	TT	2.307e^-4	0.772	INTRON CG14619	transposable element FlyBase
X	20332007	X_20332007_SNP [dm3] X_20460980_SNP [dm6]	C	T	2.313e^-4	0.772	INTRON CG32506	transposable element FlyBase
3R	12566371	3R_12566371_SNP [dm3] 3R_16740649_SNP [dm6]	A	G	2.317e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3L	10876633	3L_10876633_DEL [dm3] 3L_10883533_DEL [dm6]	TAATGATGTTGGTTTAGTAA...	T	2.322e^-4	0.772	UTR_3_PRIME CG7949 DOWNSTREAM CG6404
2R	6302354	2R_6302354_DEL [dm3] 2R_10414849_DEL [dm6]	ACA	A	2.324e^-4	0.772	INTRON CG42732
3L	13177698	3L_13177698_SNP [dm3] 3L_13184598_SNP [dm6]	C	G	2.332e^-4	0.772	INTERGENIC
3L	11057692	3L_11057692_SNP [dm3] 3L_11064592_SNP [dm6]	T	C	2.337e^-4	0.772	SYNONYMOUS_CODING CG32075 UPSTREAM SuUR & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	1965227	3R_1965227_SNP [dm3] 3R_6139505_SNP [dm6]	A	G	2.339e^-4	0.772	INTERGENIC
2R	20217046	2R_20217046_SNP [dm3] 2R_24329523_SNP [dm6]	G	C	2.341e^-4	0.772	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3R	23138825	3R_23138825_SNP [dm3] 3R_27313103_SNP [dm6]	T	A	2.343e^-4	0.772	INTRON CG3339
2R	9780954	2R_9780954_SNP [dm3] 2R_13893449_SNP [dm6]	A	G	2.346e^-4	0.772	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20926299	2L_20926299_SNP [dm3] 2L_20926299_SNP [dm6]	C	G	2.347e^-4	0.772	UPSTREAM RPA2 DOWNSTREAM CG9272 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11019313	3L_11019313_SNP [dm3] 3L_11026213_SNP [dm6]	A	G	2.356e^-4	0.772	NON_SYNONYMOUS_CODING CG32079
2L	8930418	2L_8930418_SNP [dm3] 2L_8930418_SNP [dm6]	G	A	2.357e^-4	0.772	INTRON CG34398	TF binding site mE1_TFBS_chinmo
2R	18060782	2R_18060782_SNP [dm3] 2R_22173277_SNP [dm6]	T	C	2.362e^-4	0.772	NON_SYNONYMOUS_CODING CG3045 DOWNSTREAM a
3L	10712706	3L_10712706_SNP [dm3] 3L_10719606_SNP [dm6]	C	T	2.365e^-4	0.772	INTERGENIC
2L	735623	2L_735623_SNP [dm3] 2L_735623_SNP [dm6]	T	G	2.365e^-4	0.772	INTERGENIC
3L	12295494	3L_12295494_SNP [dm3] 3L_12302394_SNP [dm6]	G	A	2.366e^-4	0.772	DOWNSTREAM CR44550 EXON CR44551
2L	7600201	2L_7600201_DEL [dm3] 2L_7600201_DEL [dm6]	ATTTTTC	A	2.369e^-4	0.772	INTERGENIC
2R	17226748	2R_17226748_SNP [dm3] 2R_21339243_SNP [dm6]	T	C	2.373e^-4	0.772	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6827802	3L_6827802_SNP [dm3] 3L_6834702_SNP [dm6]	A	T	2.381e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13902829	3L_13902829_SNP [dm3] 3L_13909729_SNP [dm6]	G	A	2.387e^-4	0.772	SYNONYMOUS_CODING Rgl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4912294	3R_4912294_SNP [dm3] 3R_9086572_SNP [dm6]	A	T	2.392e^-4	0.772	INTRON pum
2L	705940	2L_705940_SNP [dm3] 2L_705940_SNP [dm6]	C	G	2.393e^-4	0.772	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6568370	3L_6568370_SNP [dm3] 3L_6575270_SNP [dm6]	T	G	2.394e^-4	0.772	INTRON CG18769 & 1 other
2L	20926356	2L_20926356_SNP [dm3] 2L_20926356_SNP [dm6]	C	T	2.401e^-4	0.772	UTR_3_PRIME CG9272 UPSTREAM RPA2	TF binding site BDTNP1_TFBS_Med
3R	26352423	3R_26352423_SNP [dm3] 3R_30526701_SNP [dm6]	T	A	2.402e^-4	0.772	INTRON jdp
2L	8873154	2L_8873154_SNP [dm3] 2L_8873154_SNP [dm6]	G	A	2.406e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	24878592	3R_24878592_SNP [dm3] 3R_29052870_SNP [dm6]	G	A	2.413e^-4	0.772	NON_SYNONYMOUS_CODING CG11842 DOWNSTREAM CG11841	TF binding site BDTNP1_TFBS_twi
2L	10085667	2L_10085667_SNP [dm3] 2L_10085667_SNP [dm6]	C	T	2.417e^-4	0.772	INTRON CG44153
3L	4914577	3L_4914577_SNP [dm3] 3L_4914577_SNP [dm6]	G	C	2.420e^-4	0.772	INTRON Rh50
3R	26398631	3R_26398631_SNP [dm3] 3R_30572909_SNP [dm6]	A	G	2.424e^-4	0.772	INTRON tmod
X	2346540	X_2346540_SNP [dm3] X_2452507_SNP [dm6]	C	T	2.426e^-4	0.772	INTRON boi	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5974658	3L_5974658_SNP [dm3] 3L_5981558_SNP [dm6]	G	T	2.427e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	7096662	3L_7096662_SNP [dm3] 3L_7103562_SNP [dm6]	G	C	2.434e^-4	0.772	INTRON form3	TF binding site mE1_TFBS_chinmo
3R	25397032	3R_25397032_SNP [dm3] 3R_29571310_SNP [dm6]	G	T	2.435e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18013644	2L_18013644_SNP [dm3] 2L_18013644_SNP [dm6]	A	G	2.439e^-4	0.772	INTRON rdo	regulatory region REDfly_CRMs
3R	22412585	3R_22412585_DEL [dm3] 3R_26586863_DEL [dm6]	TT	T	2.442e^-4	0.772	UTR_3_PRIME scrib INTRON scrib
2R	17400647	2R_17400647_SNP [dm3] 2R_21513142_SNP [dm6]	A	T	2.451e^-4	0.772	DOWNSTREAM MESK2 INTRON MESK2
3R	27234938	3R_27234938_INS [dm3] 3R_31409216_INS [dm6]	T	TT	2.451e^-4	0.772	INTRON Gprk2
3L	1862574	3L_1862574_DEL [dm3] 3L_1862574_DEL [dm6]	TTCTAATGCTTGATTG...	A	2.456e^-4	0.772	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	6616998	2L_6616998_SNP [dm3] 2L_6616998_SNP [dm6]	C	T	2.457e^-4	0.772	UTR_3_PRIME CG11050 DOWNSTREAM CG11320
3R	9217212	3R_9217212_SNP [dm3] 3R_13391490_SNP [dm6]	T	C	2.458e^-4	0.772	INTRON CCHa2
X	13378277	X_13378277_SNP [dm3] X_13484244_SNP [dm6]	T	C	2.465e^-4	0.772	INTRON Neto
X	19421235	X_19421235_SNP [dm3] X_19527202_SNP [dm6]	G	T	2.471e^-4	0.772	NON_SYNONYMOUS_CODING CoRest INTRON CoRest	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8695552	3R_8695552_SNP [dm3] 3R_12869830_SNP [dm6]	A	T	2.472e^-4	0.772	INTERGENIC
2L	1639468	2L_1639468_SNP [dm3] 2L_1639468_SNP [dm6]	A	G	2.475e^-4	0.772	INTERGENIC
2L	6814824	2L_6814824_SNP [dm3] 2L_6814824_SNP [dm6]	A	T	2.477e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
2L	3608268	2L_3608268_SNP [dm3] 2L_3608268_SNP [dm6]	G	A	2.479e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8177942	2R_8177942_SNP [dm3] 2R_12290437_SNP [dm6]	C	T	2.481e^-4	0.772	UPSTREAM CG42700 INTRON CG42700
3R	23126551	3R_23126551_SNP [dm3] 3R_27300829_SNP [dm6]	T	A	2.487e^-4	0.772	INTRON CG3339
3L	10636569	3L_10636569_SNP [dm3] 3L_10643469_SNP [dm6]	T	A	2.490e^-4	0.772	UPSTREAM CG14153 DOWNSTREAM CG14154 INTRON CG32066
3L	5974408	3L_5974408_SNP [dm3] 3L_5981308_SNP [dm6]	C	A	2.493e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	9400675	3L_9400675_SNP [dm3] 3L_9407575_SNP [dm6]	T	A	2.493e^-4	0.772	UTR_3_PRIME CG4022 DOWNSTREAM CG4022
X	6402668	X_6402668_SNP [dm3] X_6508635_SNP [dm6]	T	G	2.497e^-4	0.772	INTRON CG42340
3L	14836099	3L_14836099_SNP [dm3] 3L_14842999_SNP [dm6]	C	T	2.499e^-4	0.772	INTRON CG17839
2R	17647603	2R_17647603_SNP [dm3] 2R_21760098_SNP [dm6]	C	A	2.510e^-4	0.772	INTERGENIC
3L	6820591	3L_6820591_SNP [dm3] 3L_6827491_SNP [dm6]	A	C	2.512e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16059304	3R_16059304_SNP [dm3] 3R_20233582_SNP [dm6]	T	A	2.520e^-4	0.772	INTRON Nlg4
3L	16666941	3L_16666941_DEL [dm3] 3L_16673841_DEL [dm6]	AG	A	2.521e^-4	0.772	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	13102987	3R_13102987_SNP [dm3] 3R_17277265_SNP [dm6]	G	A	2.531e^-4	0.772	INTERGENIC
X	10803029	X_10803029_SNP [dm3] X_10908996_SNP [dm6]	T	C	2.534e^-4	0.772	SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1844234	3L_1844234_SNP [dm3] 3L_1844234_SNP [dm6]	G	A	2.545e^-4	0.772	INTERGENIC
3L	8692394	3L_8692394_DEL [dm3] 3L_8699294_DEL [dm6]	TT	T	2.558e^-4	0.772	INTERGENIC
2L	9225015	2L_9225015_SNP [dm3] 2L_9225015_SNP [dm6]	G	A	2.558e^-4	0.772	INTRON tai	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
3R	23378495	3R_23378495_SNP [dm3] 3R_27552773_SNP [dm6]	A	C	2.562e^-4	0.772	SPLICE_SITE_REGION Klp98A INTRON Klp98A	TF binding site mE1_TFBS_cad
3L	1837877	3L_1837877_SNP [dm3] 3L_1837877_SNP [dm6]	G	A	2.567e^-4	0.772	INTERGENIC
3L	10876625	3L_10876625_DEL [dm3] 3L_10883525_DEL [dm6]	TATA	T	2.570e^-4	0.772	UTR_3_PRIME CG7949 DOWNSTREAM CG6404
3L	21288867	3L_21288867_SNP [dm3] 3L_21295767_SNP [dm6]	G	A	2.575e^-4	0.772	NON_SYNONYMOUS_CODING Cpr78Cb DOWNSTREAM Edg78E
3L	12565514	3L_12565514_SNP [dm3] 3L_12572414_SNP [dm6]	C	T	2.575e^-4	0.772	NON_SYNONYMOUS_CODING sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	10684878	3L_10684878_SNP [dm3] 3L_10691778_SNP [dm6]	T	C	2.578e^-4	0.772	SYNONYMOUS_CODING CG11811 DOWNSTREAM CG33493	TF binding site mE1_TFBS_sens
2L	7024077	2L_7024077_SNP [dm3] 2L_7024077_SNP [dm6]	C	G	2.579e^-4	0.772	UPSTREAM ade3 DOWNSTREAM CG31908 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25472043	3R_25472043_SNP [dm3] 3R_29646321_SNP [dm6]	A	C	2.581e^-4	0.772	INTRON Dop1R2
2R	19842863	2R_19842863_SNP [dm3] 2R_23955340_SNP [dm6]	C	T	2.582e^-4	0.772	SYNONYMOUS_CODING thoc5 DOWNSTREAM CG16787	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19178974	3L_19178974_SNP [dm3] 3L_19185874_SNP [dm6]	G	A	2.602e^-4	0.772	INTRON fz2
3L	11102668	3L_11102668_SNP [dm3] 3L_11109568_SNP [dm6]	A	G	2.607e^-4	0.772	UPSTREAM CG7638 & 1 other DOWNSTREAM CG12522 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8177954	2R_8177954_SNP [dm3] 2R_12290449_SNP [dm6]	T	C	2.615e^-4	0.772	UPSTREAM CG42700 INTRON CG42700
X	9630493	X_9630493_SNP [dm3] X_9736460_SNP [dm6]	A	C	2.619e^-4	0.772	INTRON Sp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	15735639	2L_15735639_SNP [dm3] 2L_15735639_SNP [dm6]	C	A	2.639e^-4	0.772	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15312244	X_15312244_SNP [dm3] X_15418211_SNP [dm6]	A	G	2.640e^-4	0.772	INTRON Cngl
3L	11576601	3L_11576601_SNP [dm3] 3L_11583501_SNP [dm6]	T	A	2.644e^-4	0.772	DOWNSTREAM rt INTRON CG32086
2R	3641201	2R_3641201_SNP [dm3] 2R_7753696_SNP [dm6]	G	A	2.652e^-4	0.772	INTRON CG30497 & 1 other
3R	12379076	3R_12379076_SNP [dm3] 3R_16553354_SNP [dm6]	A	G	2.654e^-4	0.772	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3L	10876898	3L_10876898_SNP [dm3] 3L_10883798_SNP [dm6]	C	T	2.656e^-4	0.772	DOWNSTREAM CG6404 & 1 other INTERGENIC
3R	26352963	3R_26352963_SNP [dm3] 3R_30527241_SNP [dm6]	G	A	2.659e^-4	0.772	UPSTREAM jdp INTERGENIC
3L	4355139	3L_4355139_DEL [dm3] 3L_4355139_DEL [dm6]	AA	A	2.660e^-4	0.772	INTRON Cip4
3L	8898156	3L_8898156_SNP [dm3] 3L_8905056_SNP [dm6]	C	T	2.660e^-4	0.772	UPSTREAM TrpA1 DOWNSTREAM mfr INTERGENIC
3L	8454869	3L_8454869_INS [dm3] 3L_8461769_INS [dm6]	A	AT	2.662e^-4	0.772	INTRON Gug	TF binding site BDTNP1_TFBS_dl
X	8575808	X_8575808_SNP [dm3] X_8681775_SNP [dm6]	G	A	2.663e^-4	0.772	UTR_5_PRIME CG11284 DOWNSTREAM CG12772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Trl
X	21837771	X_21837771_SNP [dm3] X_22435936_SNP [dm6]	T	A	2.673e^-4	0.772	INTERGENIC	transposable element FlyBase
3R	13102963	3R_13102963_SNP [dm3] 3R_17277241_SNP [dm6]	G	T	2.674e^-4	0.772	INTERGENIC
3L	8564377	3L_8564377_SNP [dm3] 3L_8571277_SNP [dm6]	T	C	2.677e^-4	0.772	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM mir-190 DOWNSTREAM rhea	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18753261	2R_18753261_SNP [dm3] 2R_22865738_SNP [dm6]	A	T	2.680e^-4	0.772	INTERGENIC
3L	1841110	3L_1841110_SNP [dm3] 3L_1841110_SNP [dm6]	A	G	2.681e^-4	0.772	SYNONYMOUS_CODING Cpr62Bc	TF binding site mE1_TFBS_chinmo
3L	2313160	3L_2313160_SNP [dm3] 3L_2313160_SNP [dm6]	G	T	2.684e^-4	0.772	INTERGENIC
3R	26329453	3R_26329453_SNP [dm3] 3R_30503731_SNP [dm6]	C	T	2.690e^-4	0.772	SYNONYMOUS_CODING PH4alphaSG1 UPSTREAM CG31371
3L	10231892	3L_10231892_SNP [dm3] 3L_10238792_SNP [dm6]	T	A	2.704e^-4	0.772	INTERGENIC
X	9297441	X_9297441_INS [dm3] X_9403408_INS [dm6]	T	TT	2.706e^-4	0.772	INTRON mgl
3L	2034123	3L_2034123_SNP [dm3] 3L_2034123_SNP [dm6]	C	A	2.713e^-4	0.772	INTERGENIC
3L	3364494	3L_3364494_SNP [dm3] 3L_3364494_SNP [dm6]	C	T	2.716e^-4	0.772	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10112106	X_10112106_SNP [dm3] X_10218073_SNP [dm6]	G	T	2.717e^-4	0.772	UTR_3_PRIME CG15308 DOWNSTREAM l_1_G0230 INTRON CR45629 EXON CR45629
3R	23905238	3R_23905238_SNP [dm3] 3R_28079516_SNP [dm6]	A	T	2.718e^-4	0.772	INTRON CG34362
2L	7637920	2L_7637920_SNP [dm3] 2L_7637920_SNP [dm6]	T	C	2.736e^-4	0.772	DOWNSTREAM CR44800 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	4912286	3R_4912286_SNP [dm3] 3R_9086564_SNP [dm6]	G	A	2.740e^-4	0.772	INTRON pum
2R	6385042	2R_6385042_SNP [dm3] 2R_10497537_SNP [dm6]	T	G	2.746e^-4	0.772	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	17226760	2R_17226760_SNP [dm3] 2R_21339255_SNP [dm6]	T	C	2.747e^-4	0.772	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	23136960	3R_23136960_SNP [dm3] 3R_27311238_SNP [dm6]	A	G	2.747e^-4	0.772	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo
3L	16536784	3L_16536784_SNP [dm3] 3L_16543684_SNP [dm6]	G	A	2.752e^-4	0.772	UPSTREAM CG43373 DOWNSTREAM CG13033 INTERGENIC
3R	22963004	3R_22963004_SNP [dm3] 3R_27137282_SNP [dm6]	G	A	2.755e^-4	0.772	INTRON CG6051
2L	4725620	2L_4725620_SNP [dm3] 2L_4725620_SNP [dm6]	T	G	2.763e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	22731628	3R_22731628_SNP [dm3] 3R_26905906_SNP [dm6]	A	T	2.763e^-4	0.772	INTRON T48	regulatory region REDfly_CRMs
3L	10721408	3L_10721408_SNP [dm3] 3L_10728308_SNP [dm6]	C	T	2.765e^-4	0.772	INTERGENIC
3L	8564449	3L_8564449_SNP [dm3] 3L_8571349_SNP [dm6]	C	T	2.766e^-4	0.772	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM mir-190 DOWNSTREAM rhea	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14450053	2L_14450053_SNP [dm3] 2L_14450053_SNP [dm6]	A	G	2.768e^-4	0.772	DOWNSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
X	10265523	X_10265523_SNP [dm3] X_10371490_SNP [dm6]	C	T	2.774e^-4	0.772	DOWNSTREAM CG32686 INTRON CG17841
2R	14169325	2R_14169325_SNP [dm3] 2R_18281820_SNP [dm6]	G	A	2.776e^-4	0.772	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2680015	3L_2680015_SNP [dm3] 3L_2680015_SNP [dm6]	G	A	2.777e^-4	0.772	INTRON Fife	TF binding site mE1_TFBS_chinmo
X	15317686	X_15317686_SNP [dm3] X_15423653_SNP [dm6]	T	C	2.787e^-4	0.772	INTRON Cngl
2L	18028465	2L_18028465_SNP [dm3] 2L_18028465_SNP [dm6]	G	C	2.788e^-4	0.772	INTRON rdo
2R	17647657	2R_17647657_SNP [dm3] 2R_21760152_SNP [dm6]	T	C	2.791e^-4	0.772	INTERGENIC
3R	14390471	3R_14390471_SNP [dm3] 3R_18564749_SNP [dm6]	T	A	2.791e^-4	0.772	UTR_5_PRIME CG43210 UTR_3_PRIME CG43194
2L	735595	2L_735595_SNP [dm3] 2L_735595_SNP [dm6]	A	G	2.792e^-4	0.772	INTERGENIC
3R	22412773	3R_22412773_SNP [dm3] 3R_26587051_SNP [dm6]	C	A	2.793e^-4	0.772	UTR_3_PRIME scrib INTRON scrib
3L	15051446	3L_15051446_SNP [dm3] 3L_15058346_SNP [dm6]	T	G	2.794e^-4	0.772	INTRON Sytbeta
X	15788440	X_15788440_SNP [dm3] X_15894407_SNP [dm6]	T	A	2.796e^-4	0.772	INTRON shi
X	15312292	X_15312292_SNP [dm3] X_15418259_SNP [dm6]	A	C	2.801e^-4	0.772	INTRON Cngl
2R	6383727	2R_6383727_DEL [dm3] 2R_10496222_DEL [dm6]	TAT	T	2.808e^-4	0.772	DOWNSTREAM lola INTRON lola
X	11983446	X_11983446_SNP [dm3] X_12089413_SNP [dm6]	G	A	2.809e^-4	0.772	INTRON CR43960 & 1 other	TF binding site mE1_TFBS_Kr
3L	8926649	3L_8926649_SNP [dm3] 3L_8933549_SNP [dm6]	A	G	2.820e^-4	0.772	INTRON CG43783
X	16143468	X_16143468_SNP [dm3] X_16249435_SNP [dm6]	T	G	2.821e^-4	0.772	INTERGENIC
X	15485135	X_15485135_SNP [dm3] X_15591102_SNP [dm6]	T	A	2.830e^-4	0.772	INTRON CG9220
3R	25562603	3R_25562603_SNP [dm3] 3R_29736881_SNP [dm6]	C	T	2.839e^-4	0.772	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25562623	3R_25562623_SNP [dm3] 3R_29736901_SNP [dm6]	C	G	2.839e^-4	0.772	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25562636	3R_25562636_SNP [dm3] 3R_29736914_SNP [dm6]	C	G	2.839e^-4	0.772	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23138607	3R_23138607_SNP [dm3] 3R_27312885_SNP [dm6]	T	C	2.849e^-4	0.772	INTRON CG3339
X	8172879	X_8172879_SNP [dm3] X_8278846_SNP [dm6]	A	G	2.849e^-4	0.772	UTR_3_PRIME nAChRalpha3
3L	12056077	3L_12056077_SNP [dm3] 3L_12062977_SNP [dm6]	A	T	2.850e^-4	0.772	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13584774	3R_13584774_SNP [dm3] 3R_17759052_SNP [dm6]	G	T	2.851e^-4	0.772	UPSTREAM TyrR INTRON TyrR
3R	21393360	3R_21393360_SNP [dm3] 3R_25567638_SNP [dm6]	G	C	2.857e^-4	0.772	INTRON msi
2L	13287900	2L_13287900_SNP [dm3] 2L_13287900_SNP [dm6]	T	C	2.858e^-4	0.772	NON_SYNONYMOUS_CODING Uvrag DOWNSTREAM CR44972
2L	2830679	2L_2830679_SNP [dm3] 2L_2830679_SNP [dm6]	A	G	2.863e^-4	0.772	UPSTREAM Duox INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6302383	2R_6302383_SNP [dm3] 2R_10414878_SNP [dm6]	G	A	2.867e^-4	0.772	INTRON CG42732
3R	12541062	3R_12541062_SNP [dm3] 3R_16715340_SNP [dm6]	G	A	2.875e^-4	0.772	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15735651	2L_15735651_SNP [dm3] 2L_15735651_SNP [dm6]	C	T	2.878e^-4	0.772	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14343298	3L_14343298_SNP [dm3] 3L_14350198_SNP [dm6]	C	T	2.880e^-4	0.772	INTRON fz
3L	11391837	3L_11391837_SNP [dm3] 3L_11398737_SNP [dm6]	T	C	2.883e^-4	0.772	DOWNSTREAM CG44362 INTERGENIC
3L	12098505	3L_12098505_SNP [dm3] 3L_12105405_SNP [dm6]	G	C	2.884e^-4	0.772	INTERGENIC
X	21836585	X_21836585_SNP [dm3] X_22434750_SNP [dm6]	C	A	2.890e^-4	0.772	INTERGENIC	transposable element FlyBase
2L	10873396	2L_10873396_SNP [dm3] 2L_10873396_SNP [dm6]	T	C	2.894e^-4	0.772	INTERGENIC
3R	7632249	3R_7632249_INS [dm3] 3R_11806527_INS [dm6]	C	CA	2.896e^-4	0.772	UTR_5_PRIME ClC-a INTRON ClC-a
3R	25537291	3R_25537291_SNP [dm3] 3R_29711569_SNP [dm6]	C	A	2.899e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10630242	3L_10630242_SNP [dm3] 3L_10637142_SNP [dm6]	T	A	2.903e^-4	0.772	SYNONYMOUS_CODING E_z_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15736224	2L_15736224_DEL [dm3] 2L_15736224_DEL [dm6]	GG	G	2.925e^-4	0.772	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2034006	3L_2034006_SNP [dm3] 3L_2034006_SNP [dm6]	G	C	2.927e^-4	0.772	INTERGENIC
3L	8886454	3L_8886454_SNP [dm3] 3L_8893354_SNP [dm6]	G	A	2.928e^-4	0.772	SYNONYMOUS_CODING Mcm7	TF binding site mE1_TFBS_sens
2R	15837171	2R_15837171_SNP [dm3] 2R_19949666_SNP [dm6]	T	A	2.930e^-4	0.772	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10681781	3L_10681781_SNP [dm3] 3L_10688681_SNP [dm6]	T	C	2.930e^-4	0.772	SPLICE_SITE_REGION simj SYNONYMOUS_CODING simj INTRON simj	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	9224927	2L_9224927_SNP [dm3] 2L_9224927_SNP [dm6]	G	A	2.932e^-4	0.772	INTRON tai	TF binding site mE1_TFBS_bab1 mE1_TFBS_Kr
X	11162203	X_11162203_SNP [dm3] X_11268170_SNP [dm6]	C	G	2.934e^-4	0.772	INTRON CG44422
3L	15039230	3L_15039230_SNP [dm3] 3L_15046130_SNP [dm6]	T	C	2.939e^-4	0.772	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9227218	2L_9227218_SNP [dm3] 2L_9227218_SNP [dm6]	A	G	2.946e^-4	0.772	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	20037078	3L_20037078_SNP [dm3] 3L_20043978_SNP [dm6]	A	C	2.948e^-4	0.772	INTERGENIC
3L	5416594	3L_5416594_SNP [dm3] 3L_5423494_SNP [dm6]	A	T	2.948e^-4	0.772	UPSTREAM CG34391 INTERGENIC
2L	10343298	2L_10343298_SNP [dm3] 2L_10343298_SNP [dm6]	G	A	2.949e^-4	0.772	SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	18696669	X_18696669_SNP [dm3] X_18802636_SNP [dm6]	T	C	2.952e^-4	0.772	INTRON Pk17E	TF binding site mE1_TFBS_sens
3R	17387576	3R_17387576_DEL [dm3] 3R_21561854_DEL [dm6]	GGCAGTGTAAATGTGTGTG...	G	2.954e^-4	0.772	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	8574495	X_8574495_SNP [dm3] X_8680462_SNP [dm6]	C	A	2.956e^-4	0.772	UTR_3_PRIME CG12772 UPSTREAM CG11284	TF binding site mE1_TFBS_ftz_f1
2L	5457471	2L_5457471_SNP [dm3] 2L_5457471_SNP [dm6]	T	A	2.960e^-4	0.772	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_slp1
3L	1074569	3L_1074569_SNP [dm3] 3L_1074569_SNP [dm6]	T	C	2.961e^-4	0.772	INTRON bab1
2L	9438505	2L_9438505_SNP [dm3] 2L_9438505_SNP [dm6]	C	T	2.967e^-4	0.772	INTRON numb	TF binding site BDTNP1_TFBS_dl
X	15485133	X_15485133_SNP [dm3] X_15591100_SNP [dm6]	A	G	2.967e^-4	0.772	INTRON CG9220
2R	18068264	2R_18068264_SNP [dm3] 2R_22180759_SNP [dm6]	T	C	2.970e^-4	0.772	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_prd
X	15778899	X_15778899_SNP [dm3] X_15884866_SNP [dm6]	A	T	2.973e^-4	0.772	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_chinmo
3L	10310983	3L_10310983_SNP [dm3] 3L_10317883_SNP [dm6]	A	G	2.999e^-4	0.778	INTERGENIC
3R	24140852	3R_24140852_SNP [dm3] 3R_28315130_SNP [dm6]	A	C	3.016e^-4	0.779	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1862841	3L_1862841_SNP [dm3] 3L_1862841_SNP [dm6]	T	C	3.017e^-4	0.779	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16588787	2R_16588787_SNP [dm3] 2R_20701282_SNP [dm6]	T	C	3.034e^-4	0.779	INTRON dpr
X	20244875	X_20244875_SNP [dm3] X_20373848_SNP [dm6]	C	T	3.036e^-4	0.779	INTERGENIC
3L	10624054	3L_10624054_SNP [dm3] 3L_10630954_SNP [dm6]	C	T	3.041e^-4	0.779	UPSTREAM CG42536 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	24218755	3R_24218755_SNP [dm3] 3R_28393033_SNP [dm6]	T	C	3.043e^-4	0.779	INTERGENIC
3L	1126341	3L_1126341_SNP [dm3] 3L_1126341_SNP [dm6]	A	G	3.044e^-4	0.779	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	13103007	3R_13103007_INS [dm3] 3R_17277285_INS [dm6]	T	TTT	3.045e^-4	0.779	INTERGENIC
X	9050521	X_9050521_SNP [dm3] X_9156488_SNP [dm6]	T	C	3.054e^-4	0.779	UPSTREAM His3.3B DOWNSTREAM Ost48 INTRON His3.3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	2012574	3R_2012574_SNP [dm3] 3R_6186852_SNP [dm6]	C	T	3.059e^-4	0.779	UPSTREAM NPFR INTERGENIC
2R	16071506	2R_16071506_SNP [dm3] 2R_20184001_SNP [dm6]	C	G	3.067e^-4	0.779	INTERGENIC
3R	16384693	3R_16384693_SNP [dm3] 3R_20558971_SNP [dm6]	C	T	3.068e^-4	0.779	SYNONYMOUS_CODING CG5180 DOWNSTREAM CG15922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10873713	2L_10873713_SNP [dm3] 2L_10873713_SNP [dm6]	G	A	3.072e^-4	0.779	INTERGENIC
2R	7065875	2R_7065875_SNP [dm3] 2R_11178370_SNP [dm6]	A	G	3.076e^-4	0.779	INTRON shn	TF binding site mE1_TFBS_inv
2L	2599423	2L_2599423_SNP [dm3] 2L_2599423_SNP [dm6]	T	A	3.082e^-4	0.779	INTRON CR44790
3R	23649480	3R_23649480_SNP [dm3] 3R_27823758_SNP [dm6]	A	T	3.083e^-4	0.779	INTRON CG34353
3L	15043858	3L_15043858_SNP [dm3] 3L_15050758_SNP [dm6]	G	C	3.083e^-4	0.779	NON_SYNONYMOUS_CODING CG12310 UPSTREAM CG18581 DOWNSTREAM CG43679 INTRON Sytbeta
3L	8980519	3L_8980519_SNP [dm3] 3L_8987419_SNP [dm6]	G	T	3.090e^-4	0.779	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	22731749	3R_22731749_SNP [dm3] 3R_26906027_SNP [dm6]	T	G	3.092e^-4	0.779	INTRON T48	regulatory region REDfly_CRMs
3R	24224883	3R_24224883_SNP [dm3] 3R_28399161_SNP [dm6]	C	T	3.093e^-4	0.779	INTERGENIC
3R	10052443	3R_10052443_SNP [dm3] 3R_14226721_SNP [dm6]	A	G	3.098e^-4	0.779	UTR_5_PRIME CG9631
2L	15168184	2L_15168184_SNP [dm3] 2L_15168184_SNP [dm6]	T	G	3.102e^-4	0.779	INTRON CG4168
3L	1841199	3L_1841199_SNP [dm3] 3L_1841199_SNP [dm6]	C	G	3.105e^-4	0.779	INTRON Cpr62Bc	TF binding site mE1_TFBS_chinmo
2R	16732269	2R_16732269_SNP [dm3] 2R_20844764_SNP [dm6]	T	A	3.105e^-4	0.779	INTERGENIC
3L	10963749	3L_10963749_SNP [dm3] 3L_10970649_SNP [dm6]	C	G	3.114e^-4	0.779	INTERGENIC
3R	21345556	3R_21345556_SNP [dm3] 3R_25519834_SNP [dm6]	C	T	3.117e^-4	0.779	INTRON msi
3L	17796196	3L_17796196_SNP [dm3] 3L_17803096_SNP [dm6]	T	A	3.120e^-4	0.779	SYNONYMOUS_CODING CG5589 UPSTREAM NUCB1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1619516	2L_1619516_SNP [dm3] 2L_1619516_SNP [dm6]	C	A	3.124e^-4	0.779	EXON CR44603
2R	17939511	2R_17939511_SNP [dm3] 2R_22052006_SNP [dm6]	C	T	3.124e^-4	0.779	INTERGENIC
X	14047957	X_14047957_SNP [dm3] X_14153924_SNP [dm6]	A	T	3.126e^-4	0.779	INTERGENIC
3L	1045200	3L_1045200_SNP [dm3] 3L_1045200_SNP [dm6]	G	A	3.140e^-4	0.78	INTRON bab1
3L	14834319	3L_14834319_SNP [dm3] 3L_14841219_SNP [dm6]	A	T	3.141e^-4	0.78	INTRON CG17839
2L	8504960	2L_8504960_SNP [dm3] 2L_8504960_SNP [dm6]	G	A	3.146e^-4	0.78	INTRON Dh31
2R	11264955	2R_11264955_SNP [dm3] 2R_15377450_SNP [dm6]	T	C	3.163e^-4	0.781	NON_SYNONYMOUS_CODING dup UPSTREAM CR43186	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17808688	2L_17808688_SNP [dm3] 2L_17808688_SNP [dm6]	T	G	3.174e^-4	0.781	INTRON CadN2
2R	3725808	2R_3725808_SNP [dm3] 2R_7838303_SNP [dm6]	T	A	3.177e^-4	0.781	INTRON Dgk	TF binding site mE1_TFBS_chinmo
3R	14308165	3R_14308165_SNP [dm3] 3R_18482443_SNP [dm6]	A	G	3.179e^-4	0.781	INTRON fru
3R	24159649	3R_24159649_SNP [dm3] 3R_28333927_SNP [dm6]	C	T	3.182e^-4	0.781	NON_SYNONYMOUS_CODING larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10378844	3R_10378844_SNP [dm3] 3R_14553122_SNP [dm6]	C	A	3.190e^-4	0.781	INTRON Pde6
3L	1856828	3L_1856828_SNP [dm3] 3L_1856828_SNP [dm6]	A	T	3.190e^-4	0.781	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8930415	2L_8930415_SNP [dm3] 2L_8930415_SNP [dm6]	G	T	3.191e^-4	0.781	INTRON CG34398	TF binding site mE1_TFBS_chinmo
X	4051030	X_4051030_SNP [dm3] X_4156997_SNP [dm6]	T	C	3.196e^-4	0.781	INTRON Fas2
2R	14173761	2R_14173761_SNP [dm3] 2R_18286256_SNP [dm6]	C	T	3.197e^-4	0.781	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25351616	3R_25351616_SNP [dm3] 3R_29525894_SNP [dm6]	T	C	3.199e^-4	0.781	INTERGENIC
2L	7458997	2L_7458997_SNP [dm3] 2L_7458997_SNP [dm6]	C	A	3.206e^-4	0.781	UPSTREAM Gr28b INTRON Gr28b
X	20561837	X_20561837_SNP [dm3] X_20690810_SNP [dm6]	G	C	3.221e^-4	0.781	UTR_5_PRIME run UPSTREAM CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	15780428	2L_15780428_SNP [dm3] 2L_15780428_SNP [dm6]	C	T	3.228e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12538695	3R_12538695_SNP [dm3] 3R_16712973_SNP [dm6]	A	G	3.228e^-4	0.781	INTRON Ubx
3L	9666619	3L_9666619_SNP [dm3] 3L_9673519_SNP [dm6]	C	A	3.229e^-4	0.781	INTRON fry
2R	17290700	2R_17290700_DEL [dm3] 2R_21403195_DEL [dm6]	CAAGGACATCCAC...	C	3.230e^-4	0.781	INTRON Sdc
2R	4720872	2R_4720872_SNP [dm3] 2R_8833367_SNP [dm6]	T	C	3.236e^-4	0.781	INTRON sns	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12056114	3L_12056114_SNP [dm3] 3L_12063014_SNP [dm6]	C	T	3.236e^-4	0.781	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15044708	3L_15044708_SNP [dm3] 3L_15051608_SNP [dm6]	A	T	3.239e^-4	0.781	UPSTREAM CG12310 & 1 other DOWNSTREAM CG13461 INTRON Sytbeta
3L	10841610	3L_10841610_SNP [dm3] 3L_10848510_SNP [dm6]	G	C	3.243e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10630247	3L_10630247_SNP [dm3] 3L_10637147_SNP [dm6]	C	T	3.254e^-4	0.781	NON_SYNONYMOUS_CODING E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15044709	3L_15044709_SNP [dm3] 3L_15051609_SNP [dm6]	G	A	3.258e^-4	0.781	UPSTREAM CG12310 & 1 other DOWNSTREAM CG13461 INTRON Sytbeta
3L	11057851	3L_11057851_SNP [dm3] 3L_11064751_SNP [dm6]	C	T	3.259e^-4	0.781	UTR_5_PRIME CG32075 UPSTREAM SuUR & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	16035459	3R_16035459_SNP [dm3] 3R_20209737_SNP [dm6]	C	T	3.262e^-4	0.781	UTR_5_PRIME CG17199 INTRON Nlg4
3L	6571996	3L_6571996_SNP [dm3] 3L_6578896_SNP [dm6]	C	T	3.266e^-4	0.781	INTRON CG18769 & 1 other
2L	9222785	2L_9222785_SNP [dm3] 2L_9222785_SNP [dm6]	C	G	3.267e^-4	0.781	INTRON tai
3R	18357760	3R_18357760_SNP [dm3] 3R_22532038_SNP [dm6]	A	C	3.270e^-4	0.781	UPSTREAM CG33093 DOWNSTREAM CG5326 INTERGENIC
3R	13897245	3R_13897245_SNP [dm3] 3R_18071523_SNP [dm6]	T	A	3.272e^-4	0.781	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10466509	3L_10466509_SNP [dm3] 3L_10473409_SNP [dm6]	C	A	3.278e^-4	0.781	INTERGENIC
3L	8776288	3L_8776288_SNP [dm3] 3L_8783188_SNP [dm6]	C	G	3.280e^-4	0.781	INTRON Fhos
2R	6988994	2R_6988994_SNP [dm3] 2R_11101489_SNP [dm6]	C	T	3.283e^-4	0.781	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2247177	3L_2247177_SNP [dm3] 3L_2247177_SNP [dm6]	T	C	3.284e^-4	0.781	SYNONYMOUS_CODING CG32301 UTR_3_PRIME CG32301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20988307	2L_20988307_SNP [dm3] 2L_20988307_SNP [dm6]	A	G	3.288e^-4	0.781	INTRON CG42238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8065133	2L_8065133_SNP [dm3] 2L_8065133_SNP [dm6]	T	C	3.305e^-4	0.781	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2L	9121044	2L_9121044_DEL [dm3] 2L_9121044_DEL [dm6]	GCA	G	3.308e^-4	0.781	DOWNSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18844266	3L_18844266_SNP [dm3] 3L_18851166_SNP [dm6]	C	A	3.314e^-4	0.781	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	21838994	X_21838994_SNP [dm3] X_22437159_SNP [dm6]	C	T	3.316e^-4	0.781	INTERGENIC
2L	8387181	2L_8387181_SNP [dm3] 2L_8387181_SNP [dm6]	G	A	3.317e^-4	0.781	SYNONYMOUS_CODING CG13384	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8065124	2L_8065124_SNP [dm3] 2L_8065124_SNP [dm6]	T	C	3.318e^-4	0.781	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2R	12242857	2R_12242857_SNP [dm3] 2R_16355352_SNP [dm6]	T	C	3.321e^-4	0.781	UPSTREAM CG30098 INTERGENIC
X	9297431	X_9297431_SNP [dm3] X_9403398_SNP [dm6]	G	T	3.327e^-4	0.781	INTRON mgl
2L	2881619	2L_2881619_SNP [dm3] 2L_2881619_SNP [dm6]	C	T	3.331e^-4	0.781	SYNONYMOUS_CODING NTPase DOWNSTREAM betaggt-II	TF binding site mE1_TFBS_chinmo
3L	15495025	3L_15495025_INS [dm3] 3L_15501925_INS [dm6]	T	TA	3.332e^-4	0.781	INTRON CG7272	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12494166	3L_12494166_SNP [dm3] 3L_12501066_SNP [dm6]	C	T	3.342e^-4	0.782	UPSTREAM CG10681 DOWNSTREAM CR43868 INTRON CG10638
3L	3484668	3L_3484668_SNP [dm3] 3L_3484668_SNP [dm6]	G	C	3.346e^-4	0.782	UPSTREAM CG43074 INTRON CG42324
2R	9917458	2R_9917458_SNP [dm3] 2R_14029953_SNP [dm6]	G	A	3.357e^-4	0.782	DOWNSTREAM CG18371 INTRON mam	TF binding site BDTNP1_TFBS_dl
3R	20563504	3R_20563504_SNP [dm3] 3R_24737782_SNP [dm6]	C	A	3.359e^-4	0.782	INTRON tok
3L	13234003	3L_13234003_SNP [dm3] 3L_13240903_SNP [dm6]	T	C	3.360e^-4	0.782	INTRON caps
3L	8776267	3L_8776267_SNP [dm3] 3L_8783167_SNP [dm6]	C	A	3.372e^-4	0.782	INTRON Fhos
2L	2599412	2L_2599412_SNP [dm3] 2L_2599412_SNP [dm6]	A	G	3.377e^-4	0.782	INTRON CR44790
X	11226214	X_11226214_SNP [dm3] X_11332181_SNP [dm6]	T	C	3.378e^-4	0.782	NON_SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17694846	3R_17694846_SNP [dm3] 3R_21869124_SNP [dm6]	A	G	3.379e^-4	0.782	SYNONYMOUS_CODING CG31174 DOWNSTREAM Cby
3R	14360395	3R_14360395_DEL [dm3] 3R_18534673_DEL [dm6]	CC	C	3.386e^-4	0.782	INTRON fru
3L	11032641	3L_11032641_SNP [dm3] 3L_11039541_SNP [dm6]	T	A	3.388e^-4	0.782	INTRON CG43693
3L	17922394	3L_17922394_SNP [dm3] 3L_17929294_SNP [dm6]	A	G	3.395e^-4	0.782	INTERGENIC
3R	23378485	3R_23378485_SNP [dm3] 3R_27552763_SNP [dm6]	G	A	3.398e^-4	0.782	INTRON Klp98A	TF binding site mE1_TFBS_cad
X	6368986	X_6368986_SNP [dm3] X_6474953_SNP [dm6]	C	G	3.400e^-4	0.782	INTRON CG42340
3L	3883098	3L_3883098_SNP [dm3] 3L_3883098_SNP [dm6]	G	T	3.400e^-4	0.782	INTERGENIC
2R	14477228	2R_14477228_SNP [dm3] 2R_18589723_SNP [dm6]	T	C	3.414e^-4	0.782	INTRON GEFmeso
3R	19334270	3R_19334270_SNP [dm3] 3R_23508548_SNP [dm6]	G	T	3.418e^-4	0.782	INTERGENIC
2R	9160544	2R_9160544_SNP [dm3] 2R_13273039_SNP [dm6]	C	T	3.422e^-4	0.782	INTRON Dh31-R
3L	10971983	3L_10971983_SNP [dm3] 3L_10978883_SNP [dm6]	A	T	3.422e^-4	0.782	UPSTREAM CR45745 INTERGENIC
3L	1856938	3L_1856938_SNP [dm3] 3L_1856938_SNP [dm6]	C	T	3.424e^-4	0.782	UPSTREAM CG12024 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15906287	2R_15906287_SNP [dm3] 2R_20018782_SNP [dm6]	G	A	3.431e^-4	0.782	INTERGENIC
2R	15906383	2R_15906383_SNP [dm3] 2R_20018878_SNP [dm6]	T	A	3.431e^-4	0.782	INTERGENIC
3L	21033729	3L_21033729_SNP [dm3] 3L_21040629_SNP [dm6]	G	T	3.432e^-4	0.782	INTRON siz	TF binding site mE1_TFBS_cad
3L	13902242	3L_13902242_SNP [dm3] 3L_13909142_SNP [dm6]	T	C	3.457e^-4	0.782	SYNONYMOUS_CODING Rgl	TF binding site mE1_TFBS_cad
2L	10343163	2L_10343163_SNP [dm3] 2L_10343163_SNP [dm6]	C	T	3.458e^-4	0.782	SYNONYMOUS_CODING Sps2 DOWNSTREAM CG31715	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17371228	2R_17371228_SNP [dm3] 2R_21483723_SNP [dm6]	G	A	3.458e^-4	0.782	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9591832	3L_9591832_SNP [dm3] 3L_9598732_SNP [dm6]	C	T	3.459e^-4	0.782	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC	TF binding site mE1_TFBS_cad
3L	15202080	3L_15202080_DEL [dm3] 3L_15208980_DEL [dm6]	TT	T	3.462e^-4	0.782	DOWNSTREAM CG6888 INTERGENIC
2R	12550513	2R_12550513_SNP [dm3] 2R_16663008_SNP [dm6]	A	G	3.463e^-4	0.782	INTRON Picot
2R	9128501	2R_9128501_SNP [dm3] 2R_13240996_SNP [dm6]	A	G	3.465e^-4	0.782	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5416498	3L_5416498_SNP [dm3] 3L_5423398_SNP [dm6]	T	C	3.469e^-4	0.782	UPSTREAM CG34391 INTERGENIC
2R	15180312	2R_15180312_SNP [dm3] 2R_19292807_SNP [dm6]	A	T	3.480e^-4	0.782	UTR_5_PRIME Tab2 UPSTREAM mip40	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8802928	3L_8802928_SNP [dm3] 3L_8809828_SNP [dm6]	T	C	3.484e^-4	0.782	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
3R	23281544	3R_23281544_SNP [dm3] 3R_27455822_SNP [dm6]	C	A	3.500e^-4	0.782	INTERGENIC
3L	5519549	3L_5519549_SNP [dm3] 3L_5526449_SNP [dm6]	A	G	3.506e^-4	0.782	INTRON Lkr
3L	7638433	3L_7638433_SNP [dm3] 3L_7645333_SNP [dm6]	A	G	3.507e^-4	0.782	INTERGENIC
3L	6891411	3L_6891411_SNP [dm3] 3L_6898311_SNP [dm6]	C	A	3.510e^-4	0.782	INTERGENIC
2L	5468951	2L_5468951_INS [dm3] 2L_5468951_INS [dm6]	A	CACACCATG	3.515e^-4	0.782	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	27445854	3R_27445854_SNP [dm3] 3R_31620132_SNP [dm6]	G	A	3.515e^-4	0.782	SYNONYMOUS_CODING pasha	TF binding site mE1_TFBS_cad
3L	8766320	3L_8766320_SNP [dm3] 3L_8773220_SNP [dm6]	G	T	3.516e^-4	0.782	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3L	10963757	3L_10963757_SNP [dm3] 3L_10970657_SNP [dm6]	G	T	3.519e^-4	0.782	INTERGENIC
2R	15411642	2R_15411642_SNP [dm3] 2R_19524137_SNP [dm6]	G	T	3.524e^-4	0.782	UTR_3_PRIME sm
2R	18592442	2R_18592442_SNP [dm3] 2R_22704937_SNP [dm6]	G	A	3.528e^-4	0.782	SPLICE_SITE_REGION Obp58b UPSTREAM CG30259 DOWNSTREAM Obp58c INTRON Obp58b
3R	23378488	3R_23378488_SNP [dm3] 3R_27552766_SNP [dm6]	T	C	3.529e^-4	0.782	INTRON Klp98A	TF binding site mE1_TFBS_cad
3L	4354727	3L_4354727_SNP [dm3] 3L_4354727_SNP [dm6]	A	G	3.530e^-4	0.782	INTRON Cip4
X	17559236	X_17559236_SNP [dm3] X_17665203_SNP [dm6]	A	G	3.530e^-4	0.782	SYNONYMOUS_CODING beta-Spec	TF binding site mE1_TFBS_sens
3L	1126173	3L_1126173_SNP [dm3] 3L_1126173_SNP [dm6]	G	A	3.533e^-4	0.782	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	17235189	2R_17235189_SNP [dm3] 2R_21347684_SNP [dm6]	T	A	3.536e^-4	0.782	INTRON CG9822
2R	5211924	2R_5211924_SNP [dm3] 2R_9324419_SNP [dm6]	G	A	3.542e^-4	0.783	INTRON CG13954 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1861671	3L_1861671_SNP [dm3] 3L_1861671_SNP [dm6]	A	G	3.550e^-4	0.783	UTR_5_PRIME R	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	8380358	2L_8380358_DEL [dm3] 2L_8380358_DEL [dm6]	TAGAG	T	3.558e^-4	0.784	INTRON Aats-ala	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25768738	3R_25768738_SNP [dm3] 3R_29943016_SNP [dm6]	C	A	3.571e^-4	0.786	INTRON CG15523
3L	15682889	3L_15682889_SNP [dm3] 3L_15689789_SNP [dm6]	C	A	3.578e^-4	0.786	UTR_5_PRIME CG34451 INTRON CG34451
3R	12566375	3R_12566375_SNP [dm3] 3R_16740653_SNP [dm6]	G	C	3.579e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3L	18379790	3L_18379790_DEL [dm3] 3L_18386690_DEL [dm6]	TT	T	3.589e^-4	0.787	INTERGENIC
2L	9392838	2L_9392838_SNP [dm3] 2L_9392838_SNP [dm6]	A	G	3.594e^-4	0.788	INTRON Shawl
3L	14834271	3L_14834271_SNP [dm3] 3L_14841171_SNP [dm6]	A	T	3.605e^-4	0.788	INTRON CG17839
3R	25648486	3R_25648486_INS [dm3] 3R_29822764_INS [dm6]	G	GG	3.607e^-4	0.788	INTRON neo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3538223	3L_3538223_SNP [dm3] 3L_3538223_SNP [dm6]	G	C	3.613e^-4	0.788	INTRON Eip63E
2L	12452774	2L_12452774_SNP [dm3] 2L_12452774_SNP [dm6]	G	C	3.633e^-4	0.788	NON_SYNONYMOUS_CODING CG5418 UPSTREAM CR17024 DOWNSTREAM Oatp33Eb	TF binding site mE1_TFBS_cad
3R	13672621	3R_13672621_SNP [dm3] 3R_17846899_SNP [dm6]	T	G	3.634e^-4	0.788	INTRON tinc
3L	13997050	3L_13997050_SNP [dm3] 3L_14003950_SNP [dm6]	A	T	3.647e^-4	0.788	INTRON upSET	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
3R	13061112	3R_13061112_SNP [dm3] 3R_17235390_SNP [dm6]	G	A	3.651e^-4	0.788	INTRON beat-IIb
3R	15249539	3R_15249539_SNP [dm3] 3R_19423817_SNP [dm6]	A	T	3.652e^-4	0.788	UTR_3_PRIME CG3517 INTRON CG31221
2L	3608163	2L_3608163_SNP [dm3] 2L_3608163_SNP [dm6]	T	G	3.652e^-4	0.788	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7025111	2L_7025111_SNP [dm3] 2L_7025111_SNP [dm6]	G	A	3.653e^-4	0.788	UTR_3_PRIME CG31908	TF binding site mE1_TFBS_cad
2L	1488670	2L_1488670_SNP [dm3] 2L_1488670_SNP [dm6]	G	A	3.658e^-4	0.788	INTERGENIC
X	14047943	X_14047943_SNP [dm3] X_14153910_SNP [dm6]	A	G	3.660e^-4	0.788	INTERGENIC
2R	12442231	2R_12442231_SNP [dm3] 2R_16554726_SNP [dm6]	T	A	3.664e^-4	0.788	INTRON Syn2
X	15311761	X_15311761_SNP [dm3] X_15417728_SNP [dm6]	C	G	3.668e^-4	0.788	INTRON Cngl
2L	7023977	2L_7023977_SNP [dm3] 2L_7023977_SNP [dm6]	C	A	3.671e^-4	0.788	UPSTREAM ade3 DOWNSTREAM CG31908 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6129808	2R_6129808_SNP [dm3] 2R_10242303_SNP [dm6]	T	C	3.671e^-4	0.788	INTRON Hdc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8503747	2L_8503747_SNP [dm3] 2L_8503747_SNP [dm6]	C	A	3.673e^-4	0.788	INTRON Dh31
3L	8976319	3L_8976319_SNP [dm3] 3L_8983219_SNP [dm6]	C	T	3.680e^-4	0.788	UTR_3_PRIME Galk DOWNSTREAM CG13314	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	24630096	3R_24630096_SNP [dm3] 3R_28804374_SNP [dm6]	T	C	3.682e^-4	0.788	INTERGENIC
3L	16666967	3L_16666967_DEL [dm3] 3L_16673867_DEL [dm6]	AATT	C	3.684e^-4	0.788	UPSTREAM CG13032 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2R	10672154	2R_10672154_SNP [dm3] 2R_14784649_SNP [dm6]	A	G	3.684e^-4	0.788	INTRON kn	TF binding site mE1_TFBS_inv
2L	7116459	2L_7116459_SNP [dm3] 2L_7116459_SNP [dm6]	A	T	3.687e^-4	0.788	INTRON Pvf3
3L	8980509	3L_8980509_SNP [dm3] 3L_8987409_SNP [dm6]	A	C	3.693e^-4	0.788	INTRON CG5068	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8564428	3L_8564428_SNP [dm3] 3L_8571328_SNP [dm6]	T	C	3.700e^-4	0.789	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM mir-190 DOWNSTREAM rhea	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15788469	X_15788469_SNP [dm3] X_15894436_SNP [dm6]	A	T	3.708e^-4	0.79	INTRON shi
3L	1126205	3L_1126205_SNP [dm3] 3L_1126205_SNP [dm6]	A	T	3.724e^-4	0.792	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	10623621	3L_10623621_SNP [dm3] 3L_10630521_SNP [dm6]	G	A	3.735e^-4	0.794	UPSTREAM CG42536 & 2 others INTRON CG42535	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
3L	11208752	3L_11208752_SNP [dm3] 3L_11215652_SNP [dm6]	T	A	3.750e^-4	0.796	UPSTREAM CG42671 INTRON CG42671	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	8110930	2L_8110930_SNP [dm3] 2L_8110930_SNP [dm6]	C	T	3.757e^-4	0.796	UTR_3_PRIME Bsg	TF binding site BDTNP1_TFBS_dl
X	20561845	X_20561845_INS [dm3] X_20690818_INS [dm6]	C	CC	3.762e^-4	0.796	UTR_5_PRIME run UPSTREAM CR45610	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	1854204	3L_1854204_SNP [dm3] 3L_1854204_SNP [dm6]	G	T	3.766e^-4	0.796	INTRON CG13936
2L	12553296	2L_12553296_SNP [dm3] 2L_12553296_SNP [dm6]	A	C	3.780e^-4	0.796	INTERGENIC
3R	22665339	3R_22665339_SNP [dm3] 3R_26839617_SNP [dm6]	C	T	3.784e^-4	0.796	SYNONYMOUS_CODING Tl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12452848	2L_12452848_SNP [dm3] 2L_12452848_SNP [dm6]	A	G	3.787e^-4	0.796	NON_SYNONYMOUS_CODING CG5418 UPSTREAM CR17024 DOWNSTREAM Oatp33Eb	TF binding site mE1_TFBS_cad
3R	20646974	3R_20646974_SNP [dm3] 3R_24821252_SNP [dm6]	T	G	3.790e^-4	0.796	SPLICE_SITE_REGION Saf-B INTRON Saf-B	TF binding site mE1_TFBS_cad
2R	19412116	2R_19412116_SNP [dm3] 2R_23524593_SNP [dm6]	C	A	3.791e^-4	0.796	NON_SYNONYMOUS_CODING mi UPSTREAM RabX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8790070	X_8790070_SNP [dm3] X_8896037_SNP [dm6]	T	G	3.794e^-4	0.796	INTRON Moe	TF binding site BDTNP1_TFBS_dl
X	15788490	X_15788490_SNP [dm3] X_15894457_SNP [dm6]	A	G	3.804e^-4	0.796	INTRON shi
2R	14477185	2R_14477185_SNP [dm3] 2R_18589680_SNP [dm6]	T	C	3.807e^-4	0.796	INTRON GEFmeso
2L	4800750	2L_4800750_SNP [dm3] 2L_4800750_SNP [dm6]	T	C	3.817e^-4	0.796	INTRON Clect27	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17765999	2R_17765999_SNP [dm3] 2R_21878494_SNP [dm6]	A	C	3.821e^-4	0.796	INTRON Fili	TF binding site mE1_TFBS_cnc
3L	6618825	3L_6618825_SNP [dm3] 3L_6625725_SNP [dm6]	C	T	3.826e^-4	0.796	INTRON GluRIA
3R	10047840	3R_10047840_SNP [dm3] 3R_14222118_SNP [dm6]	A	T	3.828e^-4	0.796	UTR_3_PRIME Sp212 UPSTREAM CG33109
X	18814612	X_18814612_SNP [dm3] X_18920579_SNP [dm6]	T	A	3.830e^-4	0.796	INTERGENIC
2R	16071495	2R_16071495_SNP [dm3] 2R_20183990_SNP [dm6]	T	A	3.832e^-4	0.796	INTERGENIC
X	15788538	X_15788538_SNP [dm3] X_15894505_SNP [dm6]	T	G	3.838e^-4	0.796	INTRON shi
X	8892512	X_8892512_SNP [dm3] X_8998479_SNP [dm6]	T	C	3.841e^-4	0.796	INTRON rdgA & 1 other
3R	15102120	3R_15102120_SNP [dm3] 3R_19276398_SNP [dm6]	T	C	3.843e^-4	0.796	INTERGENIC
2L	7156918	2L_7156918_SNP [dm3] 2L_7156918_SNP [dm6]	G	A	3.853e^-4	0.796	START_GAINED Pvf3 UTR_5_PRIME Pvf3
3L	9566218	3L_9566218_SNP [dm3] 3L_9573118_SNP [dm6]	G	A	3.855e^-4	0.796	INTRON CG42673
X	4049714	X_4049714_INS [dm3] X_4155681_INS [dm6]	A	AA	3.856e^-4	0.796	INTRON Fas2
3L	1705098	3L_1705098_SNP [dm3] 3L_1705098_SNP [dm6]	G	T	3.859e^-4	0.796	INTRON CG7991
2R	16837166	2R_16837166_SNP [dm3] 2R_20949661_SNP [dm6]	A	C	3.867e^-4	0.796	UPSTREAM CG33704 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8930407	2L_8930407_SNP [dm3] 2L_8930407_SNP [dm6]	G	T	3.868e^-4	0.796	INTRON CG34398	TF binding site mE1_TFBS_chinmo
3L	12569312	3L_12569312_SNP [dm3] 3L_12576212_SNP [dm6]	G	C	3.871e^-4	0.796	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3R	20906763	3R_20906763_SNP [dm3] 3R_25081041_SNP [dm6]	A	C	3.873e^-4	0.796	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17139392	2R_17139392_SNP [dm3] 2R_21251887_SNP [dm6]	G	C	3.876e^-4	0.796	UPSTREAM ASPP INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_Trl
2L	18013815	2L_18013815_SNP [dm3] 2L_18013815_SNP [dm6]	A	C	3.885e^-4	0.796	INTRON rdo	regulatory region REDfly_CRMs
X	3977404	X_3977404_SNP [dm3] X_4083371_SNP [dm6]	A	G	3.886e^-4	0.796	SYNONYMOUS_CODING CG43689	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9871081	2L_9871081_SNP [dm3] 2L_9871081_SNP [dm6]	T	A	3.888e^-4	0.796	INTRON nAChRalpha6
3L	14523237	3L_14523237_SNP [dm3] 3L_14530137_SNP [dm6]	A	T	3.902e^-4	0.798	INTRON bbg
2R	9040326	2R_9040326_DEL [dm3] 2R_13152821_DEL [dm6]	TCAAT	T	3.909e^-4	0.799	UPSTREAM Ack-like DOWNSTREAM TppII INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15538656	3L_15538656_SNP [dm3] 3L_15545556_SNP [dm6]	T	A	3.912e^-4	0.799	INTRON CrebA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7199076	2L_7199076_SNP [dm3] 2L_7199076_SNP [dm6]	C	T	3.931e^-4	0.801	INTRON CG4502
X	9192592	X_9192592_SNP [dm3] X_9298559_SNP [dm6]	A	T	3.936e^-4	0.801	INTRON lz
3L	14834488	3L_14834488_SNP [dm3] 3L_14841388_SNP [dm6]	C	T	3.936e^-4	0.801	INTRON CG17839
2L	7597030	2L_7597030_SNP [dm3] 2L_7597030_SNP [dm6]	T	A	3.946e^-4	0.801	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	12021232	2R_12021232_SNP [dm3] 2R_16133727_SNP [dm6]	T	A	3.947e^-4	0.801	INTRON spin	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	16239378	3L_16239378_SNP [dm3] 3L_16246278_SNP [dm6]	T	A	3.952e^-4	0.801	INTERGENIC
3L	13235473	3L_13235473_SNP [dm3] 3L_13242373_SNP [dm6]	C	G	3.956e^-4	0.801	INTRON caps
3L	14834226	3L_14834226_SNP [dm3] 3L_14841126_SNP [dm6]	G	A	3.960e^-4	0.801	INTRON CG17839
3R	23220682	3R_23220682_SNP [dm3] 3R_27394960_SNP [dm6]	T	G	3.971e^-4	0.803	INTRON side
3L	13996699	3L_13996699_SNP [dm3] 3L_14003599_SNP [dm6]	G	T	3.975e^-4	0.803	INTRON upSET	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	24160179	3R_24160179_SNP [dm3] 3R_28334457_SNP [dm6]	G	A	3.989e^-4	0.803	NON_SYNONYMOUS_CODING larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11032550	3L_11032550_SNP [dm3] 3L_11039450_SNP [dm6]	A	G	3.989e^-4	0.803	INTRON CG43693
2L	15756282	2L_15756282_SNP [dm3] 2L_15756282_SNP [dm6]	C	A	3.991e^-4	0.803	UTR_3_PRIME Gli DOWNSTREAM l_2_35Df
3L	6698532	3L_6698532_SNP [dm3] 3L_6705432_SNP [dm6]	A	G	4.000e^-4	0.804	UTR_5_PRIME CG8519
3R	12037542	3R_12037542_SNP [dm3] 3R_16211820_SNP [dm6]	C	T	4.001e^-4	0.804	INTERGENIC
X	5635446	X_5635446_SNP [dm3] X_5741413_SNP [dm6]	A	G	4.012e^-4	0.804	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23140254	3R_23140254_SNP [dm3] 3R_27314532_SNP [dm6]	G	A	4.021e^-4	0.804	SPLICE_SITE_REGION CG3339 SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_chinmo
2R	19460732	2R_19460732_SNP [dm3] 2R_23573209_SNP [dm6]	T	C	4.021e^-4	0.804	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	15102123	3R_15102123_SNP [dm3] 3R_19276401_SNP [dm6]	T	C	4.021e^-4	0.804	INTERGENIC
3R	14390438	3R_14390438_SNP [dm3] 3R_18564716_SNP [dm6]	T	C	4.045e^-4	0.807	NON_SYNONYMOUS_CODING CG43210 UTR_3_PRIME CG43194
3L	1866113	3L_1866113_SNP [dm3] 3L_1866113_SNP [dm6]	A	C	4.060e^-4	0.807	UPSTREAM HBS1 INTRON CG12025	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	6430940	3L_6430940_SNP [dm3] 3L_6437840_SNP [dm6]	A	C	4.062e^-4	0.807	INTRON CG42747
3R	15139518	3R_15139518_SNP [dm3] 3R_19313796_SNP [dm6]	T	C	4.070e^-4	0.807	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14833239	3L_14833239_SNP [dm3] 3L_14840139_SNP [dm6]	A	G	4.078e^-4	0.807	INTRON CG17839
2L	1730361	2L_1730361_SNP [dm3] 2L_1730361_SNP [dm6]	C	T	4.079e^-4	0.807	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11034702	3L_11034702_SNP [dm3] 3L_11041602_SNP [dm6]	T	C	4.086e^-4	0.807	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19100454	2L_19100454_SNP [dm3] 2L_19100454_SNP [dm6]	A	T	4.092e^-4	0.807	INTRON Lim3
2L	14489566	2L_14489566_SNP [dm3] 2L_14489566_SNP [dm6]	G	T	4.092e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16765513	3R_16765513_SNP [dm3] 3R_20939791_SNP [dm6]	T	C	4.109e^-4	0.807	INTRON CG31191
X	15138215	X_15138215_SNP [dm3] X_15244182_SNP [dm6]	A	T	4.111e^-4	0.807	STOP_GAINED PPYR1	TF binding site mE1_TFBS_HSA
2L	9183347	2L_9183347_SNP [dm3] 2L_9183347_SNP [dm6]	C	T	4.112e^-4	0.807	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10265558	X_10265558_SNP [dm3] X_10371525_SNP [dm6]	G	C	4.121e^-4	0.807	DOWNSTREAM CG32686 INTRON CG17841
3R	4912244	3R_4912244_SNP [dm3] 3R_9086522_SNP [dm6]	A	T	4.124e^-4	0.807	INTRON pum
3L	13903460	3L_13903460_SNP [dm3] 3L_13910360_SNP [dm6]	G	A	4.126e^-4	0.807	INTRON Rgl
3R	5374919	3R_5374919_SNP [dm3] 3R_9549197_SNP [dm6]	A	G	4.133e^-4	0.807	INTRON mura EXON CR42549	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9523196	2R_9523196_SNP [dm3] 2R_13635691_SNP [dm6]	G	A	4.141e^-4	0.807	INTRON fas
3L	8898117	3L_8898117_SNP [dm3] 3L_8905017_SNP [dm6]	A	T	4.148e^-4	0.807	UPSTREAM TrpA1 DOWNSTREAM mfr INTERGENIC
2R	15540023	2R_15540023_INS [dm3] 2R_19652518_INS [dm6]	T	TT	4.151e^-4	0.807	UPSTREAM CR44213 INTRON Ir56e EXON CR44212
3L	9592607	3L_9592607_SNP [dm3] 3L_9599507_SNP [dm6]	T	C	4.161e^-4	0.807	SYNONYMOUS_CODING CG3222 DOWNSTREAM CG3088	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14342507	3L_14342507_DEL [dm3] 3L_14349407_DEL [dm6]	GTTTATTCT	A	4.170e^-4	0.807	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	17754264	3L_17754264_SNP [dm3] 3L_17761164_SNP [dm6]	T	C	4.179e^-4	0.807	INTRON Adgf-A & 2 others
3L	15471288	3L_15471288_SNP [dm3] 3L_15478188_SNP [dm6]	G	A	4.189e^-4	0.807	INTERGENIC
3R	23378476	3R_23378476_SNP [dm3] 3R_27552754_SNP [dm6]	A	G	4.190e^-4	0.807	INTRON Klp98A	TF binding site mE1_TFBS_cad
3R	21362286	3R_21362286_SNP [dm3] 3R_25536564_SNP [dm6]	C	T	4.197e^-4	0.807	INTRON msi
X	8837337	X_8837337_SNP [dm3] X_8943304_SNP [dm6]	A	T	4.202e^-4	0.807	INTRON rdgA
2R	16433329	2R_16433329_SNP [dm3] 2R_20545824_SNP [dm6]	T	A	4.204e^-4	0.807	DOWNSTREAM CG30148 INTERGENIC
3L	12621334	3L_12621334_SNP [dm3] 3L_12628234_SNP [dm6]	T	A	4.205e^-4	0.807	EXON CR32111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18013393	2L_18013393_SNP [dm3] 2L_18013393_SNP [dm6]	A	G	4.210e^-4	0.807	INTRON rdo	regulatory region REDfly_CRMs
2L	17880585	2L_17880585_SNP [dm3] 2L_17880585_SNP [dm6]	T	G	4.218e^-4	0.807	INTERGENIC
2L	1028511	2L_1028511_SNP [dm3] 2L_1028511_SNP [dm6]	C	A	4.223e^-4	0.807	INTRON IA-2
3L	1842781	3L_1842781_SNP [dm3] 3L_1842781_SNP [dm6]	T	C	4.230e^-4	0.807	UPSTREAM Cpr62Bc INTERGENIC
3L	15043516	3L_15043516_SNP [dm3] 3L_15050416_SNP [dm6]	T	A	4.234e^-4	0.807	UTR_3_PRIME CG12310 UPSTREAM CG43678 & 1 other DOWNSTREAM CG43679 INTRON Sytbeta
2L	8065195	2L_8065195_SNP [dm3] 2L_8065195_SNP [dm6]	A	G	4.241e^-4	0.807	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11554134	2L_11554134_SNP [dm3] 2L_11554134_SNP [dm6]	C	A	4.246e^-4	0.807	INTERGENIC
3L	17754270	3L_17754270_SNP [dm3] 3L_17761170_SNP [dm6]	A	T	4.249e^-4	0.807	INTRON Adgf-A & 2 others
2L	18014758	2L_18014758_SNP [dm3] 2L_18014758_SNP [dm6]	G	C	4.257e^-4	0.807	INTRON rdo	regulatory region REDfly_CRMs
3L	13052531	3L_13052531_SNP [dm3] 3L_13059431_SNP [dm6]	C	T	4.261e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20938857	X_20938857_INS [dm3] X_21067830_INS [dm6]	T	TAT	4.262e^-4	0.807	UPSTREAM CG32512 INTRON bves
2R	4865819	2R_4865819_SNP [dm3] 2R_8978314_SNP [dm6]	T	A	4.284e^-4	0.807	INTRON CG8213	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11998173	3R_11998173_SNP [dm3] 3R_16172451_SNP [dm6]	C	T	4.289e^-4	0.807	NON_SYNONYMOUS_CODING CG8925 DOWNSTREAM CG6006
3R	20322047	3R_20322047_SNP [dm3] 3R_24496325_SNP [dm6]	T	G	4.298e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20322060	3R_20322060_SNP [dm3] 3R_24496338_SNP [dm6]	C	T	4.298e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2711153	3L_2711153_SNP [dm3] 3L_2711153_SNP [dm6]	G	A	4.299e^-4	0.807	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8564227	3L_8564227_SNP [dm3] 3L_8571127_SNP [dm6]	T	C	4.301e^-4	0.807	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_chinmo
3L	1841374	3L_1841374_SNP [dm3] 3L_1841374_SNP [dm6]	G	T	4.305e^-4	0.807	INTRON Cpr62Bc
3R	22051617	3R_22051617_SNP [dm3] 3R_26225895_SNP [dm6]	T	G	4.314e^-4	0.807	INTERGENIC
2R	14168325	2R_14168325_SNP [dm3] 2R_18280820_SNP [dm6]	G	C	4.318e^-4	0.807	SYNONYMOUS_CODING sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17209359	2R_17209359_SNP [dm3] 2R_21321854_SNP [dm6]	G	A	4.319e^-4	0.807	SYNONYMOUS_CODING CG30394
3L	14523243	3L_14523243_SNP [dm3] 3L_14530143_SNP [dm6]	C	G	4.324e^-4	0.807	INTRON bbg
3L	8499807	3L_8499807_INS [dm3] 3L_8506707_INS [dm6]	T	TTT	4.331e^-4	0.807	DOWNSTREAM ZC3H3 INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7078557	3L_7078557_SNP [dm3] 3L_7085457_SNP [dm6]	G	A	4.334e^-4	0.807	DOWNSTREAM Cpr65Ea INTERGENIC
3R	14308993	3R_14308993_SNP [dm3] 3R_18483271_SNP [dm6]	G	A	4.335e^-4	0.807	INTRON fru
2L	1028626	2L_1028626_SNP [dm3] 2L_1028626_SNP [dm6]	A	G	4.338e^-4	0.807	INTRON IA-2
X	8163412	X_8163412_SNP [dm3] X_8269379_SNP [dm6]	C	T	4.347e^-4	0.807	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
X	4989040	X_4989040_SNP [dm3] X_5095007_SNP [dm6]	T	A	4.349e^-4	0.807	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4989041	X_4989041_SNP [dm3] X_5095008_SNP [dm6]	G	A	4.349e^-4	0.807	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15135426	2L_15135426_SNP [dm3] 2L_15135426_SNP [dm6]	T	A	4.353e^-4	0.807	INTERGENIC
3R	26360398	3R_26360398_SNP [dm3] 3R_30534676_SNP [dm6]	G	A	4.362e^-4	0.807	INTRON tmod
3R	18394954	3R_18394954_SNP [dm3] 3R_22569232_SNP [dm6]	G	A	4.363e^-4	0.807	UPSTREAM CG33110 INTERGENIC	TF binding site mE1_TFBS_inv
3R	13457800	3R_13457800_DEL [dm3] 3R_17632078_DEL [dm6]	TT	T	4.380e^-4	0.807	UPSTREAM tRNA:CR31569 DOWNSTREAM tRNA:CR31573 INTRON CG43175
2L	10871931	2L_10871931_SNP [dm3] 2L_10871931_SNP [dm6]	T	A	4.390e^-4	0.807	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC

By genomic position
Variant impact
Gene name

Flight phenotype score phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results