DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.422e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.0653

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.4906	0.0236

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2787 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	4227332	2R_4227332_SNP [dm3] 2R_8339827_SNP [dm6]	C	G	3.153e^-7	0.402	INTRON pdm3	TF binding site mE1_TFBS_cad
2L	20563394	2L_20563394_SNP [dm3] 2L_20563394_SNP [dm6]	A	G	4.292e^-7	0.402	DOWNSTREAM mir-4973 INTRON CR45347
3L	5161961	3L_5161961_SNP [dm3] 3L_5168861_SNP [dm6]	C	T	1.125e^-6	0.433	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	3634285	2L_3634285_SNP [dm3] 2L_3634285_SNP [dm6]	C	T	1.216e^-6	0.433	SYNONYMOUS_CODING for	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
2L	20527572	2L_20527572_SNP [dm3] 2L_20527572_SNP [dm6]	T	G	1.372e^-6	0.433	INTERGENIC
3L	10402033	3L_10402033_INS [dm3] 3L_10408933_INS [dm6]	T	TT	1.386e^-6	0.433	INTERGENIC
2L	15466916	2L_15466916_DEL [dm3] 2L_15466916_DEL [dm6]	AA	A	1.969e^-6	0.468	INTERGENIC
2R	6246394	2R_6246394_SNP [dm3] 2R_10358889_SNP [dm6]	G	C	2.932e^-6	0.468	INTRON CG42732
2L	20560613	2L_20560613_SNP [dm3] 2L_20560613_SNP [dm6]	T	G	2.946e^-6	0.468	INTERGENIC
2R	4227403	2R_4227403_SNP [dm3] 2R_8339898_SNP [dm6]	C	A	2.998e^-6	0.468	INTRON pdm3	TF binding site mE1_TFBS_cad
2L	9966046	2L_9966046_SNP [dm3] 2L_9966046_SNP [dm6]	A	G	3.050e^-6	0.468	SYNONYMOUS_CODING Dref	TF binding site mE1_TFBS_sens
2R	18120062	2R_18120062_SNP [dm3] 2R_22232557_SNP [dm6]	T	G	3.226e^-6	0.468	INTERGENIC
2R	6239066	2R_6239066_SNP [dm3] 2R_10351561_SNP [dm6]	C	T	3.803e^-6	0.468	UTR_3_PRIME CG43172 & 1 other DOWNSTREAM CG43171 & 2 others INTRON CG42732
2L	15325079	2L_15325079_SNP [dm3] 2L_15325079_SNP [dm6]	A	G	3.825e^-6	0.468	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	4235896	2R_4235896_SNP [dm3] 2R_8348391_SNP [dm6]	T	C	4.576e^-6	0.468	INTRON pdm3	TF binding site mE1_TFBS_cad
X	16824362	X_16824362_SNP [dm3] X_16930329_SNP [dm6]	C	T	4.785e^-6	0.468	INTRON CG4928
X	2224291	X_2224291_SNP [dm3] X_2330258_SNP [dm6]	T	A	4.876e^-6	0.468	INTRON phl EXON CR33218
3R	17740663	3R_17740663_SNP [dm3] 3R_21914941_SNP [dm6]	C	G	4.959e^-6	0.468	NON_SYNONYMOUS_CODING CG17843
2L	15465989	2L_15465989_SNP [dm3] 2L_15465989_SNP [dm6]	G	A	5.109e^-6	0.468	INTERGENIC
2L	20954736	2L_20954736_SNP [dm3] 2L_20954736_SNP [dm6]	C	A	5.195e^-6	0.468	INTERGENIC
2L	15467163	2L_15467163_SNP [dm3] 2L_15467163_SNP [dm6]	T	G	5.322e^-6	0.468	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20570414	2L_20570414_SNP [dm3] 2L_20570414_SNP [dm6]	T	C	5.792e^-6	0.468	INTRON CR45347
3L	4681184	3L_4681184_SNP [dm3] 3L_4681184_SNP [dm6]	A	T	6.025e^-6	0.468	INTRON axo
2L	3633813	2L_3633813_SNP [dm3] 2L_3633813_SNP [dm6]	A	T	6.618e^-6	0.468	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7904834	2L_7904834_SNP [dm3] 2L_7904834_SNP [dm6]	T	C	6.900e^-6	0.468	INTRON Snoo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17159517	2R_17159517_SNP [dm3] 2R_21272012_SNP [dm6]	T	G	7.370e^-6	0.468	INTRON Rgk3
X	5892976	X_5892976_SNP [dm3] X_5998943_SNP [dm6]	T	G	7.408e^-6	0.468	SPLICE_SITE_REGION CG4766 INTRON CG4766	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1433301	2L_1433301_SNP [dm3] 2L_1433301_SNP [dm6]	A	T	7.566e^-6	0.468	DOWNSTREAM snRNA:U3:22A INTERGENIC
2L	7916670	2L_7916670_SNP [dm3] 2L_7916670_SNP [dm6]	G	A	7.693e^-6	0.468	INTRON Snoo
2L	20566456	2L_20566456_SNP [dm3] 2L_20566456_SNP [dm6]	C	G	7.769e^-6	0.468	INTRON CR45347
2R	3907418	2R_3907418_DEL [dm3] 2R_8019913_DEL [dm6]	ACAA	T	7.912e^-6	0.468	EXON CR45267	TF binding site BDTNP1_TFBS_Med
2R	18972875	2R_18972875_SNP [dm3] 2R_23085352_SNP [dm6]	C	T	7.986e^-6	0.468	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9588212	3R_9588212_SNP [dm3] 3R_13762490_SNP [dm6]	G	T	8.522e^-6	0.477	DOWNSTREAM CG34383 INTRON CG34383
3L	4681182	3L_4681182_SNP [dm3] 3L_4681182_SNP [dm6]	A	T	8.898e^-6	0.477	INTRON axo
2L	20526081	2L_20526081_SNP [dm3] 2L_20526081_SNP [dm6]	A	G	8.940e^-6	0.477	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16868203	2R_16868203_SNP [dm3] 2R_20980698_SNP [dm6]	A	C	9.148e^-6	0.477	INTRON CG9313
2L	20797822	2L_20797822_SNP [dm3] 2L_20797822_SNP [dm6]	G	A	9.477e^-6	0.48	UTR_5_PRIME CG9328 UPSTREAM vari	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_Trl
3R	15575851	3R_15575851_SNP [dm3] 3R_19750129_SNP [dm6]	A	G	1.013e^-5	0.489	INTRON GluClalpha
3L	6668105	3L_6668105_SNP [dm3] 3L_6675005_SNP [dm6]	A	G	1.039e^-5	0.489	INTERGENIC
2L	20560484	2L_20560484_SNP [dm3] 2L_20560484_SNP [dm6]	T	A	1.047e^-5	0.489	INTERGENIC
3L	12125055	3L_12125055_SNP [dm3] 3L_12131955_SNP [dm6]	T	C	1.089e^-5	0.489	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18119910	2R_18119910_SNP [dm3] 2R_22232405_SNP [dm6]	C	G	1.095e^-5	0.489	INTERGENIC
3R	18851705	3R_18851705_SNP [dm3] 3R_23025983_SNP [dm6]	G	C	1.137e^-5	0.489	NON_SYNONYMOUS_CODING lmd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20954737	2L_20954737_SNP [dm3] 2L_20954737_SNP [dm6]	T	A	1.147e^-5	0.489	INTERGENIC
3L	2536146	3L_2536146_SNP [dm3] 3L_2536146_SNP [dm6]	G	A	1.240e^-5	0.495	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_chinmo
2R	13805919	2R_13805919_SNP [dm3] 2R_17918414_SNP [dm6]	C	T	1.250e^-5	0.495	INTRON Elk
2R	3939954	2R_3939954_SNP [dm3] 2R_8052449_SNP [dm6]	G	A	1.280e^-5	0.495	UTR_3_PRIME CG12769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	16824361	X_16824361_SNP [dm3] X_16930328_SNP [dm6]	A	T	1.292e^-5	0.495	INTRON CG4928
2R	16377411	2R_16377411_SNP [dm3] 2R_20489906_SNP [dm6]	C	T	1.324e^-5	0.495	DOWNSTREAM CR44643 INTERGENIC
2L	4143034	2L_4143034_INS [dm3] 2L_4143034_INS [dm6]	A	AAA	1.359e^-5	0.495	INTERGENIC
X	19368586	X_19368586_SNP [dm3] X_19474553_SNP [dm6]	T	C	1.364e^-5	0.495	NON_SYNONYMOUS_CODING CG32533 UPSTREAM CG12200	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12125048	3L_12125048_SNP [dm3] 3L_12131948_SNP [dm6]	T	A	1.442e^-5	0.495	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9637066	3R_9637066_SNP [dm3] 3R_13811344_SNP [dm6]	G	A	1.464e^-5	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7819823	3R_7819823_SNP [dm3] 3R_11994101_SNP [dm6]	C	T	1.470e^-5	0.495	UPSTREAM mfas DOWNSTREAM Tk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14143171	2R_14143171_SNP [dm3] 2R_18255666_SNP [dm6]	G	C	1.486e^-5	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1404473	2R_1404473_SNP [dm3] 2R_5516968_SNP [dm6]	T	C	1.511e^-5	0.495	INTRON CG30438	transposable element FlyBase
X	19368590	X_19368590_SNP [dm3] X_19474557_SNP [dm6]	G	C	1.554e^-5	0.495	SYNONYMOUS_CODING CG32533 UPSTREAM CG12200	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4236095	2R_4236095_SNP [dm3] 2R_8348590_SNP [dm6]	C	A	1.622e^-5	0.495	INTRON pdm3
2R	15428222	2R_15428222_SNP [dm3] 2R_19540717_SNP [dm6]	G	C	1.622e^-5	0.495	INTRON sm
2L	16002975	2L_16002975_SNP [dm3] 2L_16002975_SNP [dm6]	G	C	1.633e^-5	0.495	DOWNSTREAM CG34167 & 2 others INTRON beat-Ic
2R	4079117	2R_4079117_SNP [dm3] 2R_8191612_SNP [dm6]	C	T	1.657e^-5	0.495	INTRON LRP1	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	18144372	2R_18144372_SNP [dm3] 2R_22256867_SNP [dm6]	T	C	1.663e^-5	0.495	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18144373	2R_18144373_SNP [dm3] 2R_22256868_SNP [dm6]	G	A	1.663e^-5	0.495	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2720642	3R_2720642_SNP [dm3] 3R_6894920_SNP [dm6]	T	C	1.702e^-5	0.499	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	12509823	3R_12509823_SNP [dm3] 3R_16684101_SNP [dm6]	G	A	1.730e^-5	0.499	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	15467115	2L_15467115_SNP [dm3] 2L_15467115_SNP [dm6]	G	A	1.760e^-5	0.5	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19368793	X_19368793_SNP [dm3] X_19474760_SNP [dm6]	T	C	1.797e^-5	0.503	NON_SYNONYMOUS_CODING CG32533 UPSTREAM CG12200	TF binding site mE1_TFBS_cad
2L	6273091	2L_6273091_SNP [dm3] 2L_6273091_SNP [dm6]	T	G	2.031e^-5	0.526	NON_SYNONYMOUS_CODING Ddr
3L	13344573	3L_13344573_SNP [dm3] 3L_13351473_SNP [dm6]	G	A	2.037e^-5	0.526	SYNONYMOUS_CODING CG17687	TF binding site mE1_TFBS_HSA
3R	12648381	3R_12648381_SNP [dm3] 3R_16822659_SNP [dm6]	C	A	2.038e^-5	0.526	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12309809	3L_12309809_SNP [dm3] 3L_12316709_SNP [dm6]	T	C	2.045e^-5	0.526	INTERGENIC
3R	17239742	3R_17239742_SNP [dm3] 3R_21414020_SNP [dm6]	T	C	2.052e^-5	0.526	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15181153	3L_15181153_SNP [dm3] 3L_15188053_SNP [dm6]	C	T	2.096e^-5	0.526	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6240196	2R_6240196_SNP [dm3] 2R_10352691_SNP [dm6]	G	T	2.123e^-5	0.526	UTR_5_PRIME CG43178 UTR_3_PRIME CG43171 & 1 other UPSTREAM CG43172 & 2 others INTRON CG42732
2R	18774237	2R_18774237_SNP [dm3] 2R_22886714_SNP [dm6]	A	G	2.173e^-5	0.526	UPSTREAM CG3499 DOWNSTREAM Gmer INTRON asrij	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	14197225	3R_14197225_SNP [dm3] 3R_18371503_SNP [dm6]	G	A	2.196e^-5	0.526	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15575841	3R_15575841_SNP [dm3] 3R_19750119_SNP [dm6]	G	C	2.254e^-5	0.526	INTRON GluClalpha
2R	4081526	2R_4081526_SNP [dm3] 2R_8194021_SNP [dm6]	A	G	2.275e^-5	0.526	INTRON LRP1
2L	20566535	2L_20566535_SNP [dm3] 2L_20566535_SNP [dm6]	C	A	2.287e^-5	0.526	INTRON CR45347
3L	16728893	3L_16728893_SNP [dm3] 3L_16735793_SNP [dm6]	G	A	2.333e^-5	0.526	INTRON CG9701
2L	16080943	2L_16080943_SNP [dm3] 2L_16080943_SNP [dm6]	T	A	2.336e^-5	0.526	UTR_3_PRIME beat-Ia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20142355	X_20142355_SNP [dm3] X_20271329_SNP [dm6]	T	C	2.396e^-5	0.526	INTERGENIC
2R	11119197	2R_11119197_SNP [dm3] 2R_15231692_SNP [dm6]	T	C	2.399e^-5	0.526	SPLICE_SITE_REGION CR44370 INTRON Fs EXON CR44370	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	15576193	3R_15576193_SNP [dm3] 3R_19750471_SNP [dm6]	G	T	2.427e^-5	0.526	INTRON GluClalpha
2R	4816613	2R_4816613_SNP [dm3] 2R_8929108_SNP [dm6]	C	A	2.518e^-5	0.526	NON_SYNONYMOUS_CODING PAN2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11386909	X_11386909_SNP [dm3] X_11492876_SNP [dm6]	T	A	2.562e^-5	0.526	UPSTREAM Drak EXON CR44556	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17069430	3L_17069430_SNP [dm3] 3L_17076330_SNP [dm6]	A	T	2.576e^-5	0.526	UTR_3_PRIME Rbp6 INTRON Rbp6
2R	8502880	2R_8502880_SNP [dm3] 2R_12615375_SNP [dm6]	G	A	2.589e^-5	0.526	UPSTREAM Galphaq INTRON Galphaq & 1 other	TF binding site mE1_TFBS_sens
X	15110214	X_15110214_SNP [dm3] X_15216181_SNP [dm6]	G	A	2.650e^-5	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15923502	2R_15923502_SNP [dm3] 2R_20035997_SNP [dm6]	G	A	2.669e^-5	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5144317	3R_5144317_SNP [dm3] 3R_9318595_SNP [dm6]	C	G	2.694e^-5	0.526	INTRON CG8861
2R	9745439	2R_9745439_SNP [dm3] 2R_13857934_SNP [dm6]	G	A	2.778e^-5	0.526	SYNONYMOUS_CODING tum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18110805	2R_18110805_SNP [dm3] 2R_22223300_SNP [dm6]	C	G	2.847e^-5	0.526	DOWNSTREAM Oatp58Dc INTRON Oatp58Db	TF binding site mE1_TFBS_sens
3L	9208247	3L_9208247_SNP [dm3] 3L_9215147_SNP [dm6]	C	T	2.857e^-5	0.526	UTR_3_PRIME CG4476
2L	4143038	2L_4143038_SNP [dm3] 2L_4143038_SNP [dm6]	G	A	2.878e^-5	0.526	INTERGENIC
3L	16976348	3L_16976348_SNP [dm3] 3L_16983248_SNP [dm6]	A	T	2.924e^-5	0.526	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
2R	18121646	2R_18121646_SNP [dm3] 2R_22234141_SNP [dm6]	G	C	2.937e^-5	0.526	INTERGENIC
2L	20526439	2L_20526439_SNP [dm3] 2L_20526439_SNP [dm6]	T	C	2.977e^-5	0.526	INTERGENIC
3L	15181109	3L_15181109_SNP [dm3] 3L_15188009_SNP [dm6]	T	C	2.987e^-5	0.526	INTERGENIC	TF binding site mE1_TFBS_inv
2L	16073402	2L_16073402_SNP [dm3] 2L_16073402_SNP [dm6]	C	A	2.991e^-5	0.526	INTRON beat-Ia EXON CR44870
2R	6230917	2R_6230917_SNP [dm3] 2R_10343412_SNP [dm6]	G	T	3.010e^-5	0.526	INTRON CG42732
2R	18780217	2R_18780217_SNP [dm3] 2R_22892694_SNP [dm6]	T	C	3.073e^-5	0.526	INTRON MED23	TF binding site mE1_TFBS_cad
2R	6185093	2R_6185093_SNP [dm3] 2R_10297588_SNP [dm6]	C	T	3.082e^-5	0.526	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	11874222	2R_11874222_SNP [dm3] 2R_15986717_SNP [dm6]	G	T	3.104e^-5	0.526	UPSTREAM CR45021 INTRON Strn-Mlck
3L	14286227	3L_14286227_SNP [dm3] 3L_14293127_SNP [dm6]	C	T	3.140e^-5	0.526	INTRON fz
X	3880319	X_3880319_SNP [dm3] X_3986286_SNP [dm6]	C	T	3.159e^-5	0.526	INTERGENIC
2L	16794664	2L_16794664_SNP [dm3] 2L_16794664_SNP [dm6]	T	C	3.168e^-5	0.526	SYNONYMOUS_CODING Ugt36Ba	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6447555	2R_6447555_SNP [dm3] 2R_10560050_SNP [dm6]	A	G	3.171e^-5	0.526	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2224660	X_2224660_SNP [dm3] X_2330627_SNP [dm6]	C	G	3.215e^-5	0.526	DOWNSTREAM Ilp6 INTRON phl EXON CR33218
2R	1631767	2R_1631767_SNP [dm3] 2R_5744262_SNP [dm6]	C	T	3.216e^-5	0.526	INTERGENIC	regulatory region REDfly_CRMs
2R	6232338	2R_6232338_SNP [dm3] 2R_10344833_SNP [dm6]	G	T	3.224e^-5	0.526	UPSTREAM CG42732 INTRON CG42732
2R	13805932	2R_13805932_SNP [dm3] 2R_17918427_SNP [dm6]	A	T	3.319e^-5	0.526	INTRON Elk
X	8718220	X_8718220_SNP [dm3] X_8824187_SNP [dm6]	A	T	3.331e^-5	0.526	INTERGENIC
3L	18120199	3L_18120199_DEL [dm3] 3L_18127099_DEL [dm6]	GGTTTTGTCC	G	3.352e^-5	0.526	INTERGENIC
3R	16673267	3R_16673267_SNP [dm3] 3R_20847545_SNP [dm6]	A	T	3.400e^-5	0.526	SYNONYMOUS_CODING CG15696	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4215504	2R_4215504_SNP [dm3] 2R_8327999_SNP [dm6]	T	C	3.412e^-5	0.526	UTR_5_PRIME pdm3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	13334825	2R_13334825_SNP [dm3] 2R_17447320_SNP [dm6]	T	C	3.516e^-5	0.526	UTR_5_PRIME mthl4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6230318	2R_6230318_SNP [dm3] 2R_10342813_SNP [dm6]	T	G	3.538e^-5	0.526	INTRON CG42732
2R	6230681	2R_6230681_SNP [dm3] 2R_10343176_SNP [dm6]	G	A	3.538e^-5	0.526	INTRON CG42732
2R	6230933	2R_6230933_SNP [dm3] 2R_10343428_SNP [dm6]	C	T	3.538e^-5	0.526	INTRON CG42732
2R	6233997	2R_6233997_SNP [dm3] 2R_10346492_SNP [dm6]	T	A	3.538e^-5	0.526	INTRON CG42732
2R	6235212	2R_6235212_SNP [dm3] 2R_10347707_SNP [dm6]	T	G	3.538e^-5	0.526	INTRON CG42732
2R	6237066	2R_6237066_SNP [dm3] 2R_10349561_SNP [dm6]	T	G	3.538e^-5	0.526	INTRON CG42732
2R	4020976	2R_4020976_SNP [dm3] 2R_8133471_SNP [dm6]	C	A	3.540e^-5	0.526	UTR_3_PRIME Pabp2 DOWNSTREAM Obp44a INTRON Pabp2
2R	6246860	2R_6246860_SNP [dm3] 2R_10359355_SNP [dm6]	A	G	3.555e^-5	0.526	UPSTREAM CG43396 INTRON CG42732	TF binding site BDTNP1_TFBS_twi
3R	15845813	3R_15845813_SNP [dm3] 3R_20020091_SNP [dm6]	C	T	3.572e^-5	0.526	INTRON CG4433
2R	6239121	2R_6239121_SNP [dm3] 2R_10351616_SNP [dm6]	C	T	3.588e^-5	0.526	UTR_3_PRIME CG43172 & 1 other DOWNSTREAM CG43171 & 2 others INTRON CG42732
2R	6239480	2R_6239480_SNP [dm3] 2R_10351975_SNP [dm6]	G	A	3.588e^-5	0.526	UTR_5_PRIME CG43172 DOWNSTREAM CG43171 & 2 others INTRON CG42732 & 2 others
X	6349272	X_6349272_SNP [dm3] X_6455239_SNP [dm6]	C	T	3.643e^-5	0.528	INTRON CG42340
3L	15181068	3L_15181068_SNP [dm3] 3L_15187968_SNP [dm6]	A	G	3.663e^-5	0.528	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13500400	2R_13500400_SNP [dm3] 2R_17612895_SNP [dm6]	A	G	3.688e^-5	0.528	INTRON CG10936
2L	16794763	2L_16794763_SNP [dm3] 2L_16794763_SNP [dm6]	G	A	3.720e^-5	0.528	SYNONYMOUS_CODING Ugt36Ba	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16623489	2L_16623489_SNP [dm3] 2L_16623489_SNP [dm6]	T	G	3.776e^-5	0.528	INTRON CG42389
2R	11874233	2R_11874233_SNP [dm3] 2R_15986728_SNP [dm6]	T	G	3.818e^-5	0.528	UPSTREAM CR45021 INTRON Strn-Mlck
3R	17036241	3R_17036241_SNP [dm3] 3R_21210519_SNP [dm6]	A	G	3.867e^-5	0.528	UTR_5_PRIME SNF4Agamma INTRON SNF4Agamma
2L	15469193	2L_15469193_SNP [dm3] 2L_15469193_SNP [dm6]	T	C	3.921e^-5	0.528	EXON CR45353
X	6871514	X_6871514_SNP [dm3] X_6977481_SNP [dm6]	A	G	3.963e^-5	0.528	UTR_5_PRIME ogre
3L	13344942	3L_13344942_SNP [dm3] 3L_13351842_SNP [dm6]	G	A	4.000e^-5	0.528	SYNONYMOUS_CODING CG17687
2R	3969963	2R_3969963_SNP [dm3] 2R_8082458_SNP [dm6]	G	A	4.000e^-5	0.528	UPSTREAM sut1 & 1 other INTRON slv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6231020	2R_6231020_SNP [dm3] 2R_10343515_SNP [dm6]	T	A	4.003e^-5	0.528	INTRON CG42732
2R	17763519	2R_17763519_SNP [dm3] 2R_21876014_SNP [dm6]	T	C	4.042e^-5	0.528	INTRON Fili
3L	15181102	3L_15181102_SNP [dm3] 3L_15188002_SNP [dm6]	C	A	4.045e^-5	0.528	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6247716	2R_6247716_SNP [dm3] 2R_10360211_SNP [dm6]	C	G	4.056e^-5	0.528	UPSTREAM CG43396 INTRON CG42732	TF binding site BDTNP1_TFBS_twi
2L	20903503	2L_20903503_SNP [dm3] 2L_20903503_SNP [dm6]	G	A	4.089e^-5	0.528	UTR_5_PRIME sky & 1 other
2R	14620202	2R_14620202_SNP [dm3] 2R_18732697_SNP [dm6]	G	C	4.108e^-5	0.528	INTRON Hs3st-A
2L	3594779	2L_3594779_SNP [dm3] 2L_3594779_SNP [dm6]	A	T	4.152e^-5	0.528	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10572830	3R_10572830_SNP [dm3] 3R_14747108_SNP [dm6]	T	C	4.167e^-5	0.528	SYNONYMOUS_CODING smp-30 INTRON jvl	TF binding site mE1_TFBS_cad
2R	12380520	2R_12380520_SNP [dm3] 2R_16493015_SNP [dm6]	A	G	4.195e^-5	0.528	UTR_3_PRIME S-Lap8	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15181154	3L_15181154_SNP [dm3] 3L_15188054_SNP [dm6]	C	T	4.218e^-5	0.528	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6239777	2R_6239777_SNP [dm3] 2R_10352272_SNP [dm6]	A	T	4.274e^-5	0.528	UPSTREAM CG43172 & 1 other DOWNSTREAM CG43171 & 2 others INTRON CG42732
X	19255278	X_19255278_SNP [dm3] X_19361245_SNP [dm6]	G	T	4.280e^-5	0.528	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5306472	3L_5306472_SNP [dm3] 3L_5313372_SNP [dm6]	T	G	4.408e^-5	0.528	INTERGENIC
2L	7596285	2L_7596285_DEL [dm3] 2L_7596285_DEL [dm6]	TATGT	T	4.418e^-5	0.528	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	1652315	2L_1652315_SNP [dm3] 2L_1652315_SNP [dm6]	A	C	4.427e^-5	0.528	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15181078	3L_15181078_INS [dm3] 3L_15187978_INS [dm6]	T	TG	4.442e^-5	0.528	INTERGENIC	TF binding site mE1_TFBS_inv
3R	2727063	3R_2727063_SNP [dm3] 3R_6901341_SNP [dm6]	G	A	4.452e^-5	0.528	INTRON Antp
2L	20900255	2L_20900255_SNP [dm3] 2L_20900255_SNP [dm6]	G	A	4.468e^-5	0.528	UPSTREAM CR33317 INTRON sky & 1 other
3L	15181095	3L_15181095_SNP [dm3] 3L_15187995_SNP [dm6]	A	T	4.494e^-5	0.528	INTERGENIC	TF binding site mE1_TFBS_inv
X	8707163	X_8707163_SNP [dm3] X_8813130_SNP [dm6]	G	A	4.527e^-5	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13788653	3R_13788653_SNP [dm3] 3R_17962931_SNP [dm6]	A	C	4.554e^-5	0.528	INTRON cpo
2R	4242745	2R_4242745_SNP [dm3] 2R_8355240_SNP [dm6]	T	C	4.621e^-5	0.528	INTRON pdm3
2R	9102417	2R_9102417_SNP [dm3] 2R_13214912_SNP [dm6]	C	T	4.710e^-5	0.528	UPSTREAM AQP DOWNSTREAM CG4630 INTRON CG4627	TF binding site BDTNP1_TFBS_dl
2R	5705977	2R_5705977_SNP [dm3] 2R_9818472_SNP [dm6]	G	A	4.712e^-5	0.528	UTR_3_PRIME lectin-46Ca INTRON CG1648
X	9798276	X_9798276_SNP [dm3] X_9904243_SNP [dm6]	A	G	4.718e^-5	0.528	INTERGENIC
2R	6324398	2R_6324398_SNP [dm3] 2R_10436893_SNP [dm6]	A	T	4.755e^-5	0.528	SYNONYMOUS_CODING CG12895 DOWNSTREAM RanBPM	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	10809459	2R_10809459_SNP [dm3] 2R_14921954_SNP [dm6]	A	G	4.789e^-5	0.528	INTRON CG10249
2R	4224883	2R_4224883_SNP [dm3] 2R_8337378_SNP [dm6]	C	T	4.806e^-5	0.528	INTRON pdm3
2R	6225403	2R_6225403_SNP [dm3] 2R_10337898_SNP [dm6]	G	A	4.810e^-5	0.528	INTRON CG42732
3L	5862007	3L_5862007_SNP [dm3] 3L_5868907_SNP [dm6]	A	G	4.841e^-5	0.528	INTERGENIC
3R	3987704	3R_3987704_SNP [dm3] 3R_8161982_SNP [dm6]	G	A	4.864e^-5	0.528	INTRON grn
2L	15467011	2L_15467011_SNP [dm3] 2L_15467011_SNP [dm6]	T	A	4.868e^-5	0.528	INTERGENIC
3L	12125221	3L_12125221_SNP [dm3] 3L_12132121_SNP [dm6]	T	G	4.878e^-5	0.528	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6232363	2R_6232363_SNP [dm3] 2R_10344858_SNP [dm6]	G	A	4.934e^-5	0.528	UPSTREAM CG42732 INTRON CG42732
2R	14712459	2R_14712459_SNP [dm3] 2R_18824954_SNP [dm6]	T	C	5.004e^-5	0.528	INTRON CG15097	TF binding site mE1_TFBS_chinmo
3L	1843481	3L_1843481_SNP [dm3] 3L_1843481_SNP [dm6]	G	T	5.046e^-5	0.528	INTERGENIC
X	12290967	X_12290967_SNP [dm3] X_12396934_SNP [dm6]	C	A	5.082e^-5	0.528	INTERGENIC
X	12668063	X_12668063_SNP [dm3] X_12774030_SNP [dm6]	C	G	5.130e^-5	0.528	UTR_3_PRIME CG32647
2L	15479091	2L_15479091_SNP [dm3] 2L_15479091_SNP [dm6]	C	T	5.132e^-5	0.528	UPSTREAM sna INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4774527	3R_4774527_SNP [dm3] 3R_8948805_SNP [dm6]	C	T	5.206e^-5	0.528	INTERGENIC
2L	4035769	2L_4035769_SNP [dm3] 2L_4035769_SNP [dm6]	C	T	5.208e^-5	0.528	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	14034632	3R_14034632_SNP [dm3] 3R_18208910_SNP [dm6]	C	G	5.209e^-5	0.528	START_GAINED CG44158 UTR_5_PRIME CG44158 INTRON CG7985
3R	17738374	3R_17738374_SNP [dm3] 3R_21912652_SNP [dm6]	G	A	5.212e^-5	0.528	SYNONYMOUS_CODING CG6690	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22704429	3R_22704429_SNP [dm3] 3R_26878707_SNP [dm6]	T	A	5.246e^-5	0.528	INTRON CG5500 & 1 other
2R	18967814	2R_18967814_SNP [dm3] 2R_23080291_SNP [dm6]	A	G	5.266e^-5	0.528	UPSTREAM Gr59a & 1 other INTERGENIC
2R	18967826	2R_18967826_SNP [dm3] 2R_23080303_SNP [dm6]	C	T	5.266e^-5	0.528	UPSTREAM Gr59a & 1 other INTERGENIC
3R	14196589	3R_14196589_SNP [dm3] 3R_18370867_SNP [dm6]	G	A	5.289e^-5	0.528	INTRON gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9364900	2L_9364900_SNP [dm3] 2L_9364900_SNP [dm6]	G	T	5.307e^-5	0.528	EXON CR43404
X	12668087	X_12668087_SNP [dm3] X_12774054_SNP [dm6]	A	T	5.314e^-5	0.528	UTR_3_PRIME CG32647
3L	15181069	3L_15181069_SNP [dm3] 3L_15187969_SNP [dm6]	T	C	5.323e^-5	0.528	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10159369	3L_10159369_SNP [dm3] 3L_10166269_SNP [dm6]	C	T	5.351e^-5	0.528	SYNONYMOUS_CODING CG6628 INTRON dpr10
2L	15491946	2L_15491946_SNP [dm3] 2L_15491946_SNP [dm6]	T	C	5.405e^-5	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9102428	2R_9102428_SNP [dm3] 2R_13214923_SNP [dm6]	A	G	5.410e^-5	0.528	UPSTREAM AQP DOWNSTREAM CG4630 INTRON CG4627	TF binding site BDTNP1_TFBS_dl
3L	15181106	3L_15181106_SNP [dm3] 3L_15188006_SNP [dm6]	T	C	5.446e^-5	0.529	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10013615	2R_10013615_SNP [dm3] 2R_14126110_SNP [dm6]	G	A	5.474e^-5	0.529	INTRON Prosap
3R	17742637	3R_17742637_SNP [dm3] 3R_21916915_SNP [dm6]	G	T	5.560e^-5	0.535	INTERGENIC
3L	16755954	3L_16755954_SNP [dm3] 3L_16762854_SNP [dm6]	A	G	5.652e^-5	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20801693	2L_20801693_SNP [dm3] 2L_20801693_SNP [dm6]	A	G	5.673e^-5	0.54	INTRON CG9328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	19623318	3R_19623318_SNP [dm3] 3R_23797596_SNP [dm6]	T	C	5.794e^-5	0.547	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16034832	2L_16034832_SNP [dm3] 2L_16034832_SNP [dm6]	T	A	5.800e^-5	0.547	INTRON beat-Ic
2L	4039632	2L_4039632_SNP [dm3] 2L_4039632_SNP [dm6]	T	G	5.896e^-5	0.551	INTRON ed
3L	11620896	3L_11620896_SNP [dm3] 3L_11627796_SNP [dm6]	T	A	5.904e^-5	0.551	UPSTREAM CG18815 DOWNSTREAM PCID2 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	1195122	2L_1195122_SNP [dm3] 2L_1195122_SNP [dm6]	G	C	5.959e^-5	0.551	INTRON CG5001
3L	9208386	3L_9208386_SNP [dm3] 3L_9215286_SNP [dm6]	T	C	5.985e^-5	0.551	DOWNSTREAM CG4476 INTERGENIC
2L	20802214	2L_20802214_SNP [dm3] 2L_20802214_SNP [dm6]	T	C	5.988e^-5	0.551	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16728890	3L_16728890_SNP [dm3] 3L_16735790_SNP [dm6]	G	C	6.039e^-5	0.552	INTRON CG9701
3L	18419875	3L_18419875_DEL [dm3] 3L_18426775_DEL [dm6]	TT	C	6.084e^-5	0.554	INTERGENIC
3L	2559628	3L_2559628_SNP [dm3] 3L_2559628_SNP [dm6]	A	T	6.242e^-5	0.556	INTRON msn
2L	17071492	2L_17071492_SNP [dm3] 2L_17071492_SNP [dm6]	A	T	6.254e^-5	0.556	INTERGENIC
3L	12125073	3L_12125073_SNP [dm3] 3L_12131973_SNP [dm6]	G	A	6.267e^-5	0.556	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19358077	X_19358077_SNP [dm3] X_19464044_SNP [dm6]	C	G	6.286e^-5	0.556	INTRON kek5
2R	11561719	2R_11561719_SNP [dm3] 2R_15674214_SNP [dm6]	G	T	6.299e^-5	0.556	INTRON fus	TF binding site BDTNP1_TFBS_dl
X	18500730	X_18500730_SNP [dm3] X_18606697_SNP [dm6]	T	C	6.346e^-5	0.556	UTR_3_PRIME CG15040	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7596322	2L_7596322_INS [dm3] 2L_7596322_INS [dm6]	T	TGAGGCA	6.429e^-5	0.556	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	15492299	2L_15492299_DEL [dm3] 2L_15492299_DEL [dm6]	CA	C	6.501e^-5	0.556	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12013118	3L_12013118_SNP [dm3] 3L_12020018_SNP [dm6]	T	C	6.504e^-5	0.556	INTRON rols
3R	16673243	3R_16673243_SNP [dm3] 3R_20847521_SNP [dm6]	G	A	6.505e^-5	0.556	SYNONYMOUS_CODING CG15696	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11955668	3L_11955668_SNP [dm3] 3L_11962568_SNP [dm6]	A	T	6.512e^-5	0.556	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3R	14197215	3R_14197215_SNP [dm3] 3R_18371493_SNP [dm6]	C	G	6.519e^-5	0.556	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	15181061	3L_15181061_SNP [dm3] 3L_15187961_SNP [dm6]	G	T	6.522e^-5	0.556	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4681068	3L_4681068_SNP [dm3] 3L_4681068_SNP [dm6]	A	G	6.541e^-5	0.556	INTRON axo
2R	18121524	2R_18121524_SNP [dm3] 2R_22234019_SNP [dm6]	C	T	6.551e^-5	0.556	INTERGENIC
3L	15181130	3L_15181130_INS [dm3] 3L_15188030_INS [dm6]	T	TTCAATA	6.648e^-5	0.559	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16137826	3L_16137826_SNP [dm3] 3L_16144726_SNP [dm6]	G	A	6.654e^-5	0.559	UPSTREAM CG5151 & 1 other INTRON CG5151
3L	5860166	3L_5860166_SNP [dm3] 3L_5867066_SNP [dm6]	G	C	6.798e^-5	0.559	INTERGENIC
2R	18120041	2R_18120041_SNP [dm3] 2R_22232536_SNP [dm6]	T	G	6.862e^-5	0.559	INTERGENIC
2L	1194492	2L_1194492_SNP [dm3] 2L_1194492_SNP [dm6]	G	A	6.862e^-5	0.559	INTRON CG5001
3L	18148127	3L_18148127_SNP [dm3] 3L_18155027_SNP [dm6]	T	A	6.895e^-5	0.559	UTR_3_PRIME CG13699
3L	16565368	3L_16565368_SNP [dm3] 3L_16572268_SNP [dm6]	A	G	6.914e^-5	0.559	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	10785539	3L_10785539_SNP [dm3] 3L_10792439_SNP [dm6]	A	G	6.946e^-5	0.559	INTERGENIC
2R	18121720	2R_18121720_SNP [dm3] 2R_22234215_SNP [dm6]	G	A	7.060e^-5	0.559	INTERGENIC
3R	9879793	3R_9879793_SNP [dm3] 3R_14054071_SNP [dm6]	C	A	7.078e^-5	0.559	INTERGENIC
2R	18973287	2R_18973287_SNP [dm3] 2R_23085764_SNP [dm6]	T	G	7.084e^-5	0.559	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6513561	3L_6513561_SNP [dm3] 3L_6520461_SNP [dm6]	G	A	7.136e^-5	0.559	INTRON sfl
2R	16426071	2R_16426071_SNP [dm3] 2R_20538566_SNP [dm6]	C	A	7.151e^-5	0.559	DOWNSTREAM CG13427 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4207638	2L_4207638_SNP [dm3] 2L_4207638_SNP [dm6]	T	C	7.163e^-5	0.559	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8120239	2L_8120239_SNP [dm3] 2L_8120239_SNP [dm6]	G	T	7.179e^-5	0.559	SPLICE_SITE_REGION mon2 INTRON mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20560025	2L_20560025_SNP [dm3] 2L_20560025_SNP [dm6]	T	A	7.201e^-5	0.559	INTERGENIC
2L	7856556	2L_7856556_SNP [dm3] 2L_7856556_SNP [dm6]	G	A	7.203e^-5	0.559	UPSTREAM lectin-28C INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18787514	2R_18787514_SNP [dm3] 2R_22899991_SNP [dm6]	C	T	7.215e^-5	0.559	INTRON nahoda
2L	20555537	2L_20555537_SNP [dm3] 2L_20555537_SNP [dm6]	T	C	7.227e^-5	0.559	INTERGENIC
2L	11980270	2L_11980270_DEL [dm3] 2L_11980270_DEL [dm6]	TCAT	T	7.240e^-5	0.559	INTERGENIC
3R	7819752	3R_7819752_SNP [dm3] 3R_11994030_SNP [dm6]	C	T	7.264e^-5	0.559	UPSTREAM mfas DOWNSTREAM Tk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18826263	3R_18826263_SNP [dm3] 3R_23000541_SNP [dm6]	A	G	7.272e^-5	0.559	NON_SYNONYMOUS_CODING CG34375	TF binding site mE1_TFBS_chinmo
2L	3633838	2L_3633838_SNP [dm3] 2L_3633838_SNP [dm6]	A	T	7.318e^-5	0.559	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18779756	2R_18779756_SNP [dm3] 2R_22892233_SNP [dm6]	G	A	7.321e^-5	0.559	INTRON MED23
2L	20571362	2L_20571362_SNP [dm3] 2L_20571362_SNP [dm6]	C	A	7.338e^-5	0.559	INTRON CR45347
3L	8381096	3L_8381096_SNP [dm3] 3L_8387996_SNP [dm6]	G	A	7.379e^-5	0.559	NON_SYNONYMOUS_CODING ImpE1
2L	4143065	2L_4143065_DEL [dm3] 2L_4143065_DEL [dm6]	AATAGGATA	A	7.410e^-5	0.559	INTERGENIC
3L	14240708	3L_14240708_SNP [dm3] 3L_14247608_SNP [dm6]	C	A	7.422e^-5	0.559	DOWNSTREAM CR44560 INTERGENIC
3L	11619327	3L_11619327_SNP [dm3] 3L_11626227_SNP [dm6]	A	G	7.447e^-5	0.559	UPSTREAM PCID2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16669961	3R_16669961_SNP [dm3] 3R_20844239_SNP [dm6]	G	A	7.556e^-5	0.564	SYNONYMOUS_CODING CG15695	TF binding site mE1_TFBS_sens
3L	15181117	3L_15181117_INS [dm3] 3L_15188017_INS [dm6]	T	TATAATG	7.593e^-5	0.564	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4118351	2L_4118351_SNP [dm3] 2L_4118351_SNP [dm6]	A	G	7.611e^-5	0.564	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15479063	2L_15479063_SNP [dm3] 2L_15479063_SNP [dm6]	A	T	7.648e^-5	0.565	UPSTREAM sna INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14186992	3R_14186992_SNP [dm3] 3R_18361270_SNP [dm6]	C	A	7.799e^-5	0.573	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2R	6243604	2R_6243604_DEL [dm3] 2R_10356099_DEL [dm6]	ACGAATTTACGCAG...	A	7.841e^-5	0.573	UPSTREAM CG12902 & 1 other DOWNSTREAM CG42733 INTRON CG42732
2R	4224881	2R_4224881_SNP [dm3] 2R_8337376_SNP [dm6]	A	T	7.855e^-5	0.573	INTRON pdm3
3L	19863870	3L_19863870_SNP [dm3] 3L_19870770_SNP [dm6]	A	G	7.886e^-5	0.573	UTR_5_PRIME Rab8 UPSTREAM CG8334	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11619618	3L_11619618_SNP [dm3] 3L_11626518_SNP [dm6]	G	A	8.002e^-5	0.576	SYNONYMOUS_CODING PCID2 UPSTREAM CG6083	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4871059	2L_4871059_SNP [dm3] 2L_4871059_SNP [dm6]	A	G	8.013e^-5	0.576	INTRON pog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16187944	2R_16187944_SNP [dm3] 2R_20300439_SNP [dm6]	G	C	8.087e^-5	0.576	INTERGENIC
2L	20897275	2L_20897275_SNP [dm3] 2L_20897275_SNP [dm6]	G	A	8.177e^-5	0.576	INTRON sky & 1 other
2R	11073624	2R_11073624_SNP [dm3] 2R_15186119_SNP [dm6]	A	T	8.224e^-5	0.576	DOWNSTREAM CG43068 INTRON igl
X	20156719	X_20156719_SNP [dm3] X_20285692_SNP [dm6]	G	A	8.226e^-5	0.576	INTERGENIC
2L	7053650	2L_7053650_SNP [dm3] 2L_7053650_SNP [dm6]	C	T	8.254e^-5	0.576	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15181056	3L_15181056_SNP [dm3] 3L_15187956_SNP [dm6]	T	C	8.282e^-5	0.576	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15181059	3L_15181059_SNP [dm3] 3L_15187959_SNP [dm6]	T	A	8.282e^-5	0.576	INTERGENIC	TF binding site mE1_TFBS_inv
3L	6579440	3L_6579440_SNP [dm3] 3L_6586340_SNP [dm6]	G	A	8.288e^-5	0.576	INTRON CG18769 & 1 other
3L	15181191	3L_15181191_SNP [dm3] 3L_15188091_SNP [dm6]	C	T	8.295e^-5	0.576	INTERGENIC	TF binding site mE1_TFBS_inv
X	15110233	X_15110233_INS [dm3] X_15216200_INS [dm6]	T	TT	8.328e^-5	0.576	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9364903	2L_9364903_SNP [dm3] 2L_9364903_SNP [dm6]	G	C	8.338e^-5	0.576	EXON CR43404
2L	9301540	2L_9301540_SNP [dm3] 2L_9301540_SNP [dm6]	G	T	8.355e^-5	0.576	UTR_3_PRIME Ggamma30A
2L	11826222	2L_11826222_INS [dm3] 2L_11826222_INS [dm6]	C	CGCCT	8.439e^-5	0.577	DOWNSTREAM esc INTRON Pde1c
2L	16755680	2L_16755680_SNP [dm3] 2L_16755680_SNP [dm6]	C	A	8.461e^-5	0.577	SPLICE_SITE_REGION yellow-b INTRON yellow-b
3R	15414045	3R_15414045_SNP [dm3] 3R_19588323_SNP [dm6]	C	T	8.465e^-5	0.577	INTRON Dys
X	21226306	X_21226306_SNP [dm3] X_21355279_SNP [dm6]	A	G	8.625e^-5	0.581	SYNONYMOUS_CODING sol UTR_3_PRIME sol	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6197889	2R_6197889_SNP [dm3] 2R_10310384_SNP [dm6]	C	T	8.629e^-5	0.581	SYNONYMOUS_CODING CG12909 UPSTREAM JhI-1 DOWNSTREAM Obp46a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20541265	2L_20541265_SNP [dm3] 2L_20541265_SNP [dm6]	G	C	8.665e^-5	0.581	INTERGENIC
3L	15181126	3L_15181126_INS [dm3] 3L_15188026_INS [dm6]	T	TAG	8.677e^-5	0.581	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15181134	3L_15181134_SNP [dm3] 3L_15188034_SNP [dm6]	C	A	8.677e^-5	0.581	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2329736	3L_2329736_SNP [dm3] 3L_2329736_SNP [dm6]	T	G	8.797e^-5	0.587	INTRON MsR1
2R	12467215	2R_12467215_SNP [dm3] 2R_16579710_SNP [dm6]	C	A	8.828e^-5	0.587	START_GAINED Cdk4 UTR_5_PRIME Cdk4 UPSTREAM Cdk4 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18628691	3R_18628691_SNP [dm3] 3R_22802969_SNP [dm6]	A	T	8.893e^-5	0.589	INTERGENIC
2L	20569993	2L_20569993_SNP [dm3] 2L_20569993_SNP [dm6]	C	T	8.953e^-5	0.591	INTRON CR45347
3R	14187184	3R_14187184_SNP [dm3] 3R_18361462_SNP [dm6]	C	G	9.010e^-5	0.591	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2R	17761922	2R_17761922_SNP [dm3] 2R_21874417_SNP [dm6]	C	T	9.012e^-5	0.591	INTRON Fili	TF binding site BDTNP1_TFBS_da
2R	6285246	2R_6285246_SNP [dm3] 2R_10397741_SNP [dm6]	A	G	9.072e^-5	0.592	INTRON CG42732
X	20937615	X_20937615_SNP [dm3] X_21066588_SNP [dm6]	T	A	9.140e^-5	0.592	INTRON bves & 1 other
2R	17762537	2R_17762537_SNP [dm3] 2R_21875032_SNP [dm6]	A	G	9.156e^-5	0.592	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14187046	3R_14187046_SNP [dm3] 3R_18361324_SNP [dm6]	C	T	9.159e^-5	0.592	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2R	11557063	2R_11557063_SNP [dm3] 2R_15669558_SNP [dm6]	T	A	9.266e^-5	0.593	INTRON fus	TF binding site mE1_TFBS_inv
3R	19766183	3R_19766183_SNP [dm3] 3R_23940461_SNP [dm6]	A	G	9.285e^-5	0.593	INTRON Gdh
3L	11213891	3L_11213891_SNP [dm3] 3L_11220791_SNP [dm6]	C	T	9.319e^-5	0.593	INTRON CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4681219	3L_4681219_SNP [dm3] 3L_4681219_SNP [dm6]	C	A	9.332e^-5	0.593	SPLICE_SITE_REGION axo UTR_5_PRIME axo INTRON axo
3R	26501010	3R_26501010_SNP [dm3] 3R_30675288_SNP [dm6]	C	G	9.333e^-5	0.593	INTERGENIC
3L	15181062	3L_15181062_SNP [dm3] 3L_15187962_SNP [dm6]	G	T	9.398e^-5	0.594	INTERGENIC	TF binding site mE1_TFBS_inv
X	20142351	X_20142351_SNP [dm3] X_20271325_SNP [dm6]	C	T	9.417e^-5	0.594	INTERGENIC
X	3880323	X_3880323_SNP [dm3] X_3986290_SNP [dm6]	A	T	9.458e^-5	0.594	INTERGENIC
2L	17378058	2L_17378058_SNP [dm3] 2L_17378058_SNP [dm6]	C	T	9.476e^-5	0.594	INTRON Lrch
3L	2330165	3L_2330165_SNP [dm3] 3L_2330165_SNP [dm6]	A	C	9.665e^-5	0.598	INTRON MsR1
3R	14197390	3R_14197390_SNP [dm3] 3R_18371668_SNP [dm6]	C	T	9.679e^-5	0.598	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4959612	3L_4959612_SNP [dm3] 3L_4959612_SNP [dm6]	T	C	9.682e^-5	0.598	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27531677	3R_27531677_SNP [dm3] 3R_31705955_SNP [dm6]	C	T	9.699e^-5	0.598	UPSTREAM CR45052 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
2R	4237933	2R_4237933_SNP [dm3] 2R_8350428_SNP [dm6]	T	C	9.780e^-5	0.598	INTRON pdm3
2L	15303559	2L_15303559_SNP [dm3] 2L_15303559_SNP [dm6]	G	T	9.799e^-5	0.598	INTERGENIC
2L	3120829	2L_3120829_SNP [dm3] 2L_3120829_SNP [dm6]	C	A	9.842e^-5	0.598	INTRON toc
2L	5234709	2L_5234709_SNP [dm3] 2L_5234709_SNP [dm6]	A	T	9.886e^-5	0.598	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2658954	X_2658954_SNP [dm3] X_2764921_SNP [dm6]	C	A	9.893e^-5	0.598	INTRON kirre	TF binding site mE1_TFBS_hkb
3L	17879430	3L_17879430_SNP [dm3] 3L_17886330_SNP [dm6]	G	C	9.894e^-5	0.598	SYNONYMOUS_CODING CG16775 UPSTREAM CR42548	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4143045	2L_4143045_SNP [dm3] 2L_4143045_SNP [dm6]	A	G	9.896e^-5	0.598	INTERGENIC
2L	10058057	2L_10058057_SNP [dm3] 2L_10058057_SNP [dm6]	G	A	9.918e^-5	0.598	SYNONYMOUS_CODING Pen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11980282	2L_11980282_SNP [dm3] 2L_11980282_SNP [dm6]	G	C	9.966e^-5	0.599	INTERGENIC
2L	18469027	2L_18469027_SNP [dm3] 2L_18469027_SNP [dm6]	C	T	1.000e^-4	0.599	INTRON let-7-C	TF binding site mE1_TFBS_Trl
3R	17388793	3R_17388793_SNP [dm3] 3R_21563071_SNP [dm6]	C	T	1.015e^-4	0.605	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15181053	3L_15181053_SNP [dm3] 3L_15187953_SNP [dm6]	T	A	1.020e^-4	0.605	INTERGENIC	TF binding site mE1_TFBS_inv
2L	20566459	2L_20566459_SNP [dm3] 2L_20566459_SNP [dm6]	C	T	1.030e^-4	0.605	INTRON CR45347
2R	4211611	2R_4211611_SNP [dm3] 2R_8324106_SNP [dm6]	G	A	1.032e^-4	0.605	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20874149	3L_20874149_SNP [dm3] 3L_20881049_SNP [dm6]	A	T	1.032e^-4	0.605	INTRON CG32432
2L	7519812	2L_7519812_SNP [dm3] 2L_7519812_SNP [dm6]	G	A	1.038e^-4	0.605	INTRON RapGAP1 EXON CR44082	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3L	16638348	3L_16638348_DEL [dm3] 3L_16645248_DEL [dm6]	TA	G	1.040e^-4	0.605	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10542179	2R_10542179_SNP [dm3] 2R_14654674_SNP [dm6]	A	G	1.043e^-4	0.605	INTERGENIC
2R	18166170	2R_18166170_SNP [dm3] 2R_22278665_SNP [dm6]	A	C	1.045e^-4	0.605	INTRON dve
2L	3633790	2L_3633790_SNP [dm3] 2L_3633790_SNP [dm6]	G	A	1.048e^-4	0.605	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11311271	3R_11311271_SNP [dm3] 3R_15485549_SNP [dm6]	C	T	1.050e^-4	0.605	NON_SYNONYMOUS_CODING Trissin UPSTREAM CG5205 & 1 other DOWNSTREAM Rh6	TF binding site mE1_TFBS_HSA
3L	17801506	3L_17801506_SNP [dm3] 3L_17808406_SNP [dm6]	T	A	1.055e^-4	0.605	DOWNSTREAM cln3 INTRON CG32191
2L	18343061	2L_18343061_SNP [dm3] 2L_18343061_SNP [dm6]	A	T	1.064e^-4	0.605	INTRON Fas3
3L	12125060	3L_12125060_SNP [dm3] 3L_12131960_SNP [dm6]	G	T	1.066e^-4	0.605	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15492265	2L_15492265_SNP [dm3] 2L_15492265_SNP [dm6]	T	A	1.066e^-4	0.605	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16869413	3R_16869413_SNP [dm3] 3R_21043691_SNP [dm6]	G	T	1.079e^-4	0.605	UPSTREAM CG12278 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	16623530	2L_16623530_SNP [dm3] 2L_16623530_SNP [dm6]	A	G	1.081e^-4	0.605	INTRON CG42389
3L	6797970	3L_6797970_SNP [dm3] 3L_6804870_SNP [dm6]	C	A	1.083e^-4	0.605	INTERGENIC	regulatory region REDfly_CRMs
X	13299720	X_13299720_SNP [dm3] X_13405687_SNP [dm6]	C	T	1.084e^-4	0.605	INTRON GstT4	TF binding site BDTNP1_TFBS_twi
3L	18647431	3L_18647431_SNP [dm3] 3L_18654331_SNP [dm6]	T	A	1.084e^-4	0.605	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl
3L	6038500	3L_6038500_SNP [dm3] 3L_6045400_SNP [dm6]	G	T	1.084e^-4	0.605	INTERGENIC
2L	20839327	2L_20839327_SNP [dm3] 2L_20839327_SNP [dm6]	G	T	1.085e^-4	0.605	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	6605078	2L_6605078_SNP [dm3] 2L_6605078_SNP [dm6]	C	T	1.087e^-4	0.605	INTERGENIC
2L	20801676	2L_20801676_SNP [dm3] 2L_20801676_SNP [dm6]	C	A	1.088e^-4	0.605	INTRON CG9328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	17695060	X_17695060_SNP [dm3] X_17801027_SNP [dm6]	A	G	1.093e^-4	0.607	INTRON OdsH
3L	6478021	3L_6478021_SNP [dm3] 3L_6484921_SNP [dm6]	C	A	1.103e^-4	0.607	SYNONYMOUS_CODING CG42747	TF binding site mE1_TFBS_cad
2L	7596254	2L_7596254_SNP [dm3] 2L_7596254_SNP [dm6]	A	T	1.106e^-4	0.607	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15181122	3L_15181122_SNP [dm3] 3L_15188022_SNP [dm6]	G	A	1.106e^-4	0.607	INTERGENIC	TF binding site mE1_TFBS_inv
X	16823189	X_16823189_SNP [dm3] X_16929156_SNP [dm6]	T	C	1.110e^-4	0.607	INTRON CG4928
3R	8340834	3R_8340834_SNP [dm3] 3R_12515112_SNP [dm6]	G	A	1.111e^-4	0.607	INTRON Octbeta3R	TF binding site mE1_TFBS_cad
X	16822862	X_16822862_SNP [dm3] X_16928829_SNP [dm6]	A	T	1.114e^-4	0.607	INTRON CG4928
X	18490397	X_18490397_SNP [dm3] X_18596364_SNP [dm6]	C	A	1.121e^-4	0.608	INTERGENIC
2L	7953281	2L_7953281_DEL [dm3] 2L_7953281_DEL [dm6]	AA	A	1.124e^-4	0.608	INTRON Snoo
X	16823081	X_16823081_SNP [dm3] X_16929048_SNP [dm6]	C	A	1.125e^-4	0.608	INTRON CG4928
2L	20555532	2L_20555532_SNP [dm3] 2L_20555532_SNP [dm6]	T	A	1.131e^-4	0.608	INTERGENIC
2R	16433708	2R_16433708_SNP [dm3] 2R_20546203_SNP [dm6]	T	A	1.134e^-4	0.608	DOWNSTREAM CG30148 INTERGENIC
3R	14449670	3R_14449670_SNP [dm3] 3R_18623948_SNP [dm6]	G	A	1.135e^-4	0.608	INTRON qin
3L	1094830	3L_1094830_DEL [dm3] 3L_1094830_DEL [dm6]	GG	G	1.139e^-4	0.608	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	2720723	3R_2720723_SNP [dm3] 3R_6895001_SNP [dm6]	A	T	1.152e^-4	0.612	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
2L	20593124	2L_20593124_SNP [dm3] 2L_20593124_SNP [dm6]	A	G	1.153e^-4	0.612	INTRON CR44909
3L	11415526	3L_11415526_SNP [dm3] 3L_11422426_SNP [dm6]	G	T	1.160e^-4	0.612	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18034487	2R_18034487_SNP [dm3] 2R_22146982_SNP [dm6]	C	T	1.161e^-4	0.612	INTRON a	TF binding site mE1_TFBS_inv
3L	2538316	3L_2538316_SNP [dm3] 3L_2538316_SNP [dm6]	C	A	1.162e^-4	0.612	INTRON Spn
3R	15592298	3R_15592298_SNP [dm3] 3R_19766576_SNP [dm6]	A	G	1.168e^-4	0.612	SYNONYMOUS_CODING GluClalpha
2R	18129839	2R_18129839_SNP [dm3] 2R_22242334_SNP [dm6]	T	G	1.169e^-4	0.612	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	6572263	3L_6572263_SNP [dm3] 3L_6579163_SNP [dm6]	C	T	1.176e^-4	0.612	INTRON CG18769 & 1 other
2R	3830862	2R_3830862_SNP [dm3] 2R_7943357_SNP [dm6]	G	A	1.178e^-4	0.612	UPSTREAM CG34430 INTRON CG14764
X	12291396	X_12291396_SNP [dm3] X_12397363_SNP [dm6]	A	G	1.183e^-4	0.612	INTERGENIC
X	11066613	X_11066613_SNP [dm3] X_11172580_SNP [dm6]	C	G	1.188e^-4	0.612	INTERGENIC
2L	20532847	2L_20532847_SNP [dm3] 2L_20532847_SNP [dm6]	T	C	1.191e^-4	0.612	INTERGENIC
3L	15181049	3L_15181049_INS [dm3] 3L_15187949_INS [dm6]	TTT	AAATGAAA	1.196e^-4	0.612	INTERGENIC	TF binding site mE1_TFBS_inv
2R	11139521	2R_11139521_SNP [dm3] 2R_15252016_SNP [dm6]	T	G	1.198e^-4	0.612	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	13788823	3R_13788823_SNP [dm3] 3R_17963101_SNP [dm6]	C	T	1.204e^-4	0.612	INTRON cpo
2L	7468953	2L_7468953_SNP [dm3] 2L_7468953_SNP [dm6]	A	T	1.204e^-4	0.612	INTRON CG6055
3R	8613697	3R_8613697_SNP [dm3] 3R_12787975_SNP [dm6]	A	G	1.206e^-4	0.612	INTERGENIC
2L	20726696	2L_20726696_SNP [dm3] 2L_20726696_SNP [dm6]	G	A	1.207e^-4	0.612	UPSTREAM CG9316 DOWNSTREAM CG9317 INTERGENIC
3R	12509408	3R_12509408_SNP [dm3] 3R_16683686_SNP [dm6]	T	C	1.208e^-4	0.612	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	18343001	2L_18343001_SNP [dm3] 2L_18343001_SNP [dm6]	G	T	1.214e^-4	0.612	INTRON Fas3
2L	18343004	2L_18343004_SNP [dm3] 2L_18343004_SNP [dm6]	A	G	1.214e^-4	0.612	INTRON Fas3
3R	2718761	3R_2718761_SNP [dm3] 3R_6893039_SNP [dm6]	T	A	1.218e^-4	0.612	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16938872	2R_16938872_SNP [dm3] 2R_21051367_SNP [dm6]	G	A	1.226e^-4	0.613	SYNONYMOUS_CODING shg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18501734	X_18501734_SNP [dm3] X_18607701_SNP [dm6]	A	G	1.229e^-4	0.613	SYNONYMOUS_CODING CG15040	TF binding site mE1_TFBS_chinmo
2R	4234703	2R_4234703_SNP [dm3] 2R_8347198_SNP [dm6]	C	G	1.231e^-4	0.613	INTRON pdm3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9775851	2R_9775851_SNP [dm3] 2R_13888346_SNP [dm6]	T	C	1.236e^-4	0.613	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3R	23795327	3R_23795327_SNP [dm3] 3R_27969605_SNP [dm6]	A	G	1.239e^-4	0.613	INTRON betaTub97EF	TF binding site mE1_TFBS_cad
X	14615022	X_14615022_INS [dm3] X_14720989_INS [dm6]	G	GACAAGACAATATAC...	1.243e^-4	0.613	INTRON NetB
2L	20575484	2L_20575484_SNP [dm3] 2L_20575484_SNP [dm6]	A	G	1.247e^-4	0.613	EXON CR45347
X	6871526	X_6871526_INS [dm3] X_6977493_INS [dm6]	G	GAT	1.258e^-4	0.613	UTR_5_PRIME ogre
3L	11381815	3L_11381815_SNP [dm3] 3L_11388715_SNP [dm6]	C	T	1.259e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14513513	2R_14513513_SNP [dm3] 2R_18626008_SNP [dm6]	G	A	1.268e^-4	0.613	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
2L	20900127	2L_20900127_SNP [dm3] 2L_20900127_SNP [dm6]	G	A	1.269e^-4	0.613	INTRON sky & 1 other
2R	3886834	2R_3886834_SNP [dm3] 2R_7999329_SNP [dm6]	G	C	1.272e^-4	0.613	INTERGENIC	transposable element FlyBase
3L	17031744	3L_17031744_SNP [dm3] 3L_17038644_SNP [dm6]	C	T	1.276e^-4	0.613	SYNONYMOUS_CODING scaf6 UTR_3_PRIME scaf6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18774942	2R_18774942_SNP [dm3] 2R_22887419_SNP [dm6]	T	C	1.278e^-4	0.613	SYNONYMOUS_CODING asrij DOWNSTREAM Gmer	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11943250	3R_11943250_SNP [dm3] 3R_16117528_SNP [dm6]	G	T	1.289e^-4	0.613	INTRON Sb
2R	9400003	2R_9400003_SNP [dm3] 2R_13512498_SNP [dm6]	A	C	1.293e^-4	0.613	DOWNSTREAM Vmat INTRON mip120
3R	4224974	3R_4224974_SNP [dm3] 3R_8399252_SNP [dm6]	G	T	1.296e^-4	0.613	INTRON CG45263
X	3011157	X_3011157_SNP [dm3] X_3117124_SNP [dm6]	C	T	1.301e^-4	0.613	INTRON kirre
2R	11561578	2R_11561578_SNP [dm3] 2R_15674073_SNP [dm6]	A	G	1.302e^-4	0.613	INTRON fus
2R	18782673	2R_18782673_SNP [dm3] 2R_22895150_SNP [dm6]	T	A	1.310e^-4	0.613	NON_SYNONYMOUS_CODING CG3700 DOWNSTREAM MED23	TF binding site mE1_TFBS_cad
X	16531546	X_16531546_SNP [dm3] X_16637513_SNP [dm6]	C	A	1.310e^-4	0.613	UPSTREAM RpS19a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	558976	2R_558976_SNP [dm3] 2R_4671471_SNP [dm6]	A	C	1.312e^-4	0.613	UPSTREAM CG17883 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15668513	3L_15668513_SNP [dm3] 3L_15675413_SNP [dm6]	T	G	1.314e^-4	0.613	INTERGENIC	silencer mE1_HDAC_PRE
2L	20536657	2L_20536657_SNP [dm3] 2L_20536657_SNP [dm6]	T	C	1.320e^-4	0.613	INTERGENIC
2L	6275879	2L_6275879_SNP [dm3] 2L_6275879_SNP [dm6]	A	T	1.322e^-4	0.613	INTRON Ddr
3R	16670022	3R_16670022_SNP [dm3] 3R_20844300_SNP [dm6]	G	T	1.331e^-4	0.613	NON_SYNONYMOUS_CODING CG15695	TF binding site mE1_TFBS_sens
3R	12564369	3R_12564369_SNP [dm3] 3R_16738647_SNP [dm6]	A	G	1.333e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19530831	3L_19530831_SNP [dm3] 3L_19537731_SNP [dm6]	T	C	1.336e^-4	0.613	DOWNSTREAM CG9279 INTRON Cpr76Bd
3R	11958905	3R_11958905_DEL [dm3] 3R_16133183_DEL [dm6]	CGCC	C	1.338e^-4	0.613	INTRON Sb
2L	15985033	2L_15985033_SNP [dm3] 2L_15985033_SNP [dm6]	C	A	1.339e^-4	0.613	INTERGENIC
X	4418322	X_4418322_SNP [dm3] X_4524289_SNP [dm6]	C	T	1.340e^-4	0.613	INTRON CR32773
2L	20880980	2L_20880980_SNP [dm3] 2L_20880980_SNP [dm6]	A	G	1.344e^-4	0.613	INTRON sky & 1 other
2L	6737169	2L_6737169_SNP [dm3] 2L_6737169_SNP [dm6]	T	C	1.345e^-4	0.613	SYNONYMOUS_CODING TTLL3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7758148	X_7758148_SNP [dm3] X_7864115_SNP [dm6]	G	A	1.346e^-4	0.613	DOWNSTREAM Ir7b INTERGENIC
2L	16759551	2L_16759551_SNP [dm3] 2L_16759551_SNP [dm6]	A	G	1.350e^-4	0.613	SPLICE_SITE_REGION ppk17 INTRON ppk17
2L	12982724	2L_12982724_SNP [dm3] 2L_12982724_SNP [dm6]	T	G	1.351e^-4	0.613	INTERGENIC
2L	10494423	2L_10494423_SNP [dm3] 2L_10494423_SNP [dm6]	A	C	1.353e^-4	0.613	SPLICE_SITE_REGION Myo31DF INTRON Myo31DF	TF binding site mE1_TFBS_sens
2L	5342591	2L_5342591_SNP [dm3] 2L_5342591_SNP [dm6]	A	C	1.353e^-4	0.613	UPSTREAM CG12512 INTERGENIC
3L	12127171	3L_12127171_SNP [dm3] 3L_12134071_SNP [dm6]	G	A	1.356e^-4	0.613	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
2R	12977125	2R_12977125_SNP [dm3] 2R_17089620_SNP [dm6]	G	T	1.359e^-4	0.613	SYNONYMOUS_CODING Sply
X	7758085	X_7758085_SNP [dm3] X_7864052_SNP [dm6]	C	T	1.359e^-4	0.613	DOWNSTREAM Ir7b INTERGENIC
2L	2650259	2L_2650259_SNP [dm3] 2L_2650259_SNP [dm6]	T	C	1.363e^-4	0.613	NON_SYNONYMOUS_CODING CG33125
X	14615062	X_14615062_SNP [dm3] X_14721029_SNP [dm6]	G	A	1.363e^-4	0.613	INTRON NetB
2L	7053632	2L_7053632_SNP [dm3] 2L_7053632_SNP [dm6]	G	A	1.365e^-4	0.613	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5302881	3L_5302881_SNP [dm3] 3L_5309781_SNP [dm6]	C	T	1.368e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16236011	2R_16236011_SNP [dm3] 2R_20348506_SNP [dm6]	T	A	1.370e^-4	0.613	DOWNSTREAM CG16741 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19522721	3L_19522721_SNP [dm3] 3L_19529621_SNP [dm6]	C	G	1.378e^-4	0.613	INTERGENIC
2R	15975531	2R_15975531_SNP [dm3] 2R_20088026_SNP [dm6]	A	G	1.381e^-4	0.613	INTERGENIC
2L	5234705	2L_5234705_SNP [dm3] 2L_5234705_SNP [dm6]	A	G	1.382e^-4	0.613	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13775025	3L_13775025_SNP [dm3] 3L_13781925_SNP [dm6]	A	G	1.386e^-4	0.613	INTRON bru-3
3L	21700953	3L_21700953_INS [dm3] 3L_21707853_INS [dm6]	G	GCGTTCTG	1.392e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16064669	3R_16064669_SNP [dm3] 3R_20238947_SNP [dm6]	G	A	1.397e^-4	0.613	INTRON Nlg4
3R	24612248	3R_24612248_SNP [dm3] 3R_28786526_SNP [dm6]	A	C	1.400e^-4	0.613	INTERGENIC
3L	15181045	3L_15181045_SNP [dm3] 3L_15187945_SNP [dm6]	G	A	1.407e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_inv
2L	512435	2L_512435_DEL [dm3] 2L_512435_DEL [dm6]	TT	T	1.407e^-4	0.613	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2R	5220713	2R_5220713_SNP [dm3] 2R_9333208_SNP [dm6]	G	A	1.408e^-4	0.613	INTRON CG13954 & 1 other
X	19369923	X_19369923_SNP [dm3] X_19475890_SNP [dm6]	G	C	1.410e^-4	0.613	UTR_3_PRIME CG12200 INTRON CG32533
3L	12480583	3L_12480583_SNP [dm3] 3L_12487483_SNP [dm6]	C	T	1.416e^-4	0.613	INTRON CG10660	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	5561254	2L_5561254_SNP [dm3] 2L_5561254_SNP [dm6]	A	G	1.417e^-4	0.613	NON_SYNONYMOUS_CODING GluRIIB
2L	1429060	2L_1429060_DEL [dm3] 2L_1429060_DEL [dm6]	GG	G	1.419e^-4	0.613	UTR_3_PRIME CG43401 DOWNSTREAM CG43401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3633837	2L_3633837_SNP [dm3] 2L_3633837_SNP [dm6]	C	G	1.421e^-4	0.613	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18034509	2R_18034509_SNP [dm3] 2R_22147004_SNP [dm6]	T	C	1.428e^-4	0.613	INTRON a	TF binding site mE1_TFBS_inv
X	6871510	X_6871510_SNP [dm3] X_6977477_SNP [dm6]	T	C	1.432e^-4	0.613	UTR_5_PRIME ogre
2L	16329210	2L_16329210_SNP [dm3] 2L_16329210_SNP [dm6]	C	A	1.432e^-4	0.613	UPSTREAM CG4440 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1409803	2L_1409803_INS [dm3] 2L_1409803_INS [dm6]	C	CTGCATTTGCC...	1.440e^-4	0.613	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20839325	2L_20839325_SNP [dm3] 2L_20839325_SNP [dm6]	A	T	1.450e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	20839328	2L_20839328_SNP [dm3] 2L_20839328_SNP [dm6]	G	C	1.450e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	26031152	3R_26031152_SNP [dm3] 3R_30205430_SNP [dm6]	G	C	1.459e^-4	0.613	INTERGENIC
3L	18645429	3L_18645429_SNP [dm3] 3L_18652329_SNP [dm6]	A	C	1.459e^-4	0.613	INTRON MYPT-75D
X	22078349	X_22078349_DEL [dm3] X_22676513_DEL [dm6]	CT	C	1.460e^-4	0.613	INTRON CR44997
3L	17455062	3L_17455062_SNP [dm3] 3L_17461962_SNP [dm6]	G	T	1.467e^-4	0.613	INTERGENIC
2R	18195774	2R_18195774_SNP [dm3] 2R_22308269_SNP [dm6]	A	T	1.473e^-4	0.613	INTRON wdp
3R	13788646	3R_13788646_INS [dm3] 3R_17962924_INS [dm6]	T	TT	1.484e^-4	0.613	INTRON cpo
2R	16442102	2R_16442102_SNP [dm3] 2R_20554597_SNP [dm6]	A	T	1.492e^-4	0.613	INTERGENIC
2L	838744	2L_838744_SNP [dm3] 2L_838744_SNP [dm6]	T	A	1.493e^-4	0.613	INTRON drongo	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	20923620	2L_20923620_SNP [dm3] 2L_20923620_SNP [dm6]	G	T	1.494e^-4	0.613	UPSTREAM Mtp & 1 other INTERGENIC
2L	9995390	2L_9995390_SNP [dm3] 2L_9995390_SNP [dm6]	A	C	1.520e^-4	0.613	UTR_3_PRIME bib DOWNSTREAM CG31875	TF binding site BDTNP1_TFBS_dl
2R	19597786	2R_19597786_SNP [dm3] 2R_23710263_SNP [dm6]	A	T	1.525e^-4	0.613	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18408230	3L_18408230_SNP [dm3] 3L_18415130_SNP [dm6]	C	A	1.525e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4143114	2L_4143114_SNP [dm3] 2L_4143114_SNP [dm6]	T	C	1.526e^-4	0.613	INTERGENIC
2R	14987293	2R_14987293_SNP [dm3] 2R_19099788_SNP [dm6]	C	A	1.528e^-4	0.613	INTRON 5-HT1A
2L	6038724	2L_6038724_SNP [dm3] 2L_6038724_SNP [dm6]	A	G	1.528e^-4	0.613	SYNONYMOUS_CODING CG31643 UPSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	14226022	2R_14226022_SNP [dm3] 2R_18338517_SNP [dm6]	A	C	1.529e^-4	0.613	INTRON sbb	TF binding site BDTNP1_TFBS_dl
3R	16670021	3R_16670021_SNP [dm3] 3R_20844299_SNP [dm6]	C	T	1.533e^-4	0.613	SYNONYMOUS_CODING CG15695	TF binding site mE1_TFBS_sens
2R	13340808	2R_13340808_SNP [dm3] 2R_17453303_SNP [dm6]	A	T	1.534e^-4	0.613	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18343087	2L_18343087_SNP [dm3] 2L_18343087_SNP [dm6]	C	A	1.536e^-4	0.613	INTRON Fas3
2R	4335094	2R_4335094_SNP [dm3] 2R_8447589_SNP [dm6]	G	A	1.537e^-4	0.613	NON_SYNONYMOUS_CODING Cyp4e1 DOWNSTREAM Cyp4e2	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	6238885	2R_6238885_SNP [dm3] 2R_10351380_SNP [dm6]	G	A	1.543e^-4	0.613	DOWNSTREAM CG43172 & 1 other INTRON CG42732
3L	2174736	3L_2174736_SNP [dm3] 3L_2174736_SNP [dm6]	T	A	1.546e^-4	0.613	UPSTREAM CG15820 INTERGENIC
2R	19597797	2R_19597797_SNP [dm3] 2R_23710274_SNP [dm6]	A	G	1.546e^-4	0.613	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18946727	2R_18946727_SNP [dm3] 2R_23059204_SNP [dm6]	G	C	1.549e^-4	0.613	SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
2R	18946929	2R_18946929_SNP [dm3] 2R_23059406_SNP [dm6]	G	A	1.549e^-4	0.613	SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
X	4094790	X_4094790_SNP [dm3] X_4200757_SNP [dm6]	T	C	1.550e^-4	0.613	INTRON Fas2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20891019	X_20891019_SNP [dm3] X_21019992_SNP [dm6]	C	T	1.550e^-4	0.613	INTERGENIC
2L	12982914	2L_12982914_SNP [dm3] 2L_12982914_SNP [dm6]	A	C	1.551e^-4	0.613	INTERGENIC
3R	1582976	3R_1582976_SNP [dm3] 3R_5757254_SNP [dm6]	G	A	1.559e^-4	0.613	SYNONYMOUS_CODING Sec8	TF binding site mE1_TFBS_cad
2L	16367833	2L_16367833_SNP [dm3] 2L_16367833_SNP [dm6]	C	T	1.560e^-4	0.613	DOWNSTREAM jhamt INTERGENIC
3R	12648383	3R_12648383_INS [dm3] 3R_16822661_INS [dm6]	TC	AGT	1.567e^-4	0.613	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9588138	3R_9588138_SNP [dm3] 3R_13762416_SNP [dm6]	C	T	1.573e^-4	0.613	DOWNSTREAM CG34383 INTRON CG34383
2L	19456260	2L_19456260_SNP [dm3] 2L_19456260_SNP [dm6]	G	T	1.578e^-4	0.613	INTRON CG10026
3L	14812641	3L_14812641_SNP [dm3] 3L_14819541_SNP [dm6]	G	T	1.581e^-4	0.613	INTRON CG17839
2R	13536051	2R_13536051_SNP [dm3] 2R_17648546_SNP [dm6]	G	A	1.581e^-4	0.613	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14187037	3R_14187037_SNP [dm3] 3R_18361315_SNP [dm6]	T	C	1.583e^-4	0.613	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2L	19189379	2L_19189379_SNP [dm3] 2L_19189379_SNP [dm6]	T	C	1.587e^-4	0.613	UPSTREAM drl INTRON pigeon	TF binding site mE1_TFBS_HSA
2L	20575331	2L_20575331_SNP [dm3] 2L_20575331_SNP [dm6]	G	T	1.589e^-4	0.613	INTRON CR45347
3R	20284171	3R_20284171_SNP [dm3] 3R_24458449_SNP [dm6]	T	A	1.591e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	18034500	2R_18034500_SNP [dm3] 2R_22146995_SNP [dm6]	C	A	1.592e^-4	0.613	INTRON a	TF binding site mE1_TFBS_inv
2L	20555523	2L_20555523_SNP [dm3] 2L_20555523_SNP [dm6]	T	G	1.604e^-4	0.613	INTERGENIC
2L	20555527	2L_20555527_SNP [dm3] 2L_20555527_SNP [dm6]	T	G	1.604e^-4	0.613	INTERGENIC
3L	17879359	3L_17879359_SNP [dm3] 3L_17886259_SNP [dm6]	C	T	1.606e^-4	0.613	NON_SYNONYMOUS_CODING CG16775 UPSTREAM CR42548	TF binding site mE1_TFBS_cad
2L	19096822	2L_19096822_SNP [dm3] 2L_19096822_SNP [dm6]	A	C	1.610e^-4	0.613	INTRON Lim3	TF binding site mE1_TFBS_cad
2L	4709158	2L_4709158_SNP [dm3] 2L_4709158_SNP [dm6]	C	T	1.617e^-4	0.613	INTRON CG34351
2L	5562883	2L_5562883_SNP [dm3] 2L_5562883_SNP [dm6]	C	T	1.618e^-4	0.613	INTRON GluRIIB	TF binding site mE1_TFBS_cad
2R	19597813	2R_19597813_SNP [dm3] 2R_23710290_SNP [dm6]	G	T	1.627e^-4	0.613	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20217823	2R_20217823_SNP [dm3] 2R_24330300_SNP [dm6]	G	A	1.629e^-4	0.613	DOWNSTREAM CR44810 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	16061108	3L_16061108_SNP [dm3] 3L_16068008_SNP [dm6]	T	C	1.633e^-4	0.613	INTRON Mbs	TF binding site mE1_TFBS_cad
3L	13344558	3L_13344558_SNP [dm3] 3L_13351458_SNP [dm6]	G	A	1.633e^-4	0.613	SYNONYMOUS_CODING CG17687	TF binding site mE1_TFBS_HSA
2R	18130762	2R_18130762_SNP [dm3] 2R_22243257_SNP [dm6]	T	C	1.635e^-4	0.613	UPSTREAM dve INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	24112721	3R_24112721_SNP [dm3] 3R_28286999_SNP [dm6]	C	T	1.641e^-4	0.613	INTERGENIC
X	5005222	X_5005222_SNP [dm3] X_5111189_SNP [dm6]	C	A	1.647e^-4	0.613	INTRON rg & 1 other
X	11217490	X_11217490_SNP [dm3] X_11323457_SNP [dm6]	C	T	1.648e^-4	0.613	DOWNSTREAM l_1_10Bb INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7596222	2L_7596222_MNP [dm3] 2L_7596222_MNP [dm6]	AGT	CAA	1.650e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7596231	2L_7596231_DEL [dm3] 2L_7596231_DEL [dm6]	TATAAAAGAAAAACCTTCT...	T	1.650e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7721635	2L_7721635_SNP [dm3] 2L_7721635_SNP [dm6]	A	G	1.650e^-4	0.613	INTRON CG13794
2L	2758116	2L_2758116_SNP [dm3] 2L_2758116_SNP [dm6]	C	A	1.660e^-4	0.613	DOWNSTREAM Snapin & 2 others EXON CR44772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	17364093	2L_17364093_SNP [dm3] 2L_17364093_SNP [dm6]	G	A	1.665e^-4	0.613	NON_SYNONYMOUS_CODING CG31804
3R	17357187	3R_17357187_DEL [dm3] 3R_21531465_DEL [dm6]	TGGCA	C	1.667e^-4	0.613	EXON CR43372	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17357193	3R_17357193_SNP [dm3] 3R_21531471_SNP [dm6]	A	G	1.667e^-4	0.613	EXON CR43372	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16135654	2R_16135654_SNP [dm3] 2R_20248149_SNP [dm6]	A	C	1.667e^-4	0.613	UTR_3_PRIME CG9864 UPSTREAM ppk6	TF binding site mE1_TFBS_cad
2R	11139686	2R_11139686_SNP [dm3] 2R_15252181_SNP [dm6]	T	C	1.676e^-4	0.613	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	18490494	X_18490494_SNP [dm3] X_18596461_SNP [dm6]	T	C	1.678e^-4	0.613	INTERGENIC
3L	5862737	3L_5862737_INS [dm3] 3L_5869637_INS [dm6]	A	ATTTAAAACAAAAA...	1.679e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18120051	2R_18120051_SNP [dm3] 2R_22232546_SNP [dm6]	G	T	1.681e^-4	0.613	INTERGENIC
3L	9900462	3L_9900462_SNP [dm3] 3L_9907362_SNP [dm6]	A	C	1.690e^-4	0.613	UPSTREAM CG34356 INTERGENIC
2R	18196024	2R_18196024_SNP [dm3] 2R_22308519_SNP [dm6]	T	A	1.695e^-4	0.613	INTRON wdp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14848210	X_14848210_SNP [dm3] X_14954177_SNP [dm6]	A	T	1.716e^-4	0.613	UTR_3_PRIME CG9030 UPSTREAM pdgy & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	1585487	3R_1585487_SNP [dm3] 3R_5759765_SNP [dm6]	G	C	1.717e^-4	0.613	UTR_3_PRIME CG2082 UPSTREAM Sec8 INTRON CG2082
2L	2074238	2L_2074238_SNP [dm3] 2L_2074238_SNP [dm6]	T	A	1.718e^-4	0.613	INTRON dpr3
2L	2074239	2L_2074239_SNP [dm3] 2L_2074239_SNP [dm6]	C	T	1.718e^-4	0.613	INTRON dpr3
3L	20075475	3L_20075475_SNP [dm3] 3L_20082375_SNP [dm6]	A	C	1.719e^-4	0.613	INTRON sNPF-R
2R	4121445	2R_4121445_SNP [dm3] 2R_8233940_SNP [dm6]	G	A	1.722e^-4	0.613	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	2863500	2R_2863500_SNP [dm3] 2R_6975995_SNP [dm6]	T	C	1.723e^-4	0.613	UTR_3_PRIME vimar UPSTREAM Cyp6u1 & 1 other	TF binding site BDTNP1_TFBS_da
3L	12514950	3L_12514950_SNP [dm3] 3L_12521850_SNP [dm6]	C	T	1.729e^-4	0.613	SYNONYMOUS_CODING Gcn5 DOWNSTREAM tral	TF binding site mE1_TFBS_cad
2L	16755679	2L_16755679_SNP [dm3] 2L_16755679_SNP [dm6]	G	C	1.730e^-4	0.613	SPLICE_SITE_REGION yellow-b INTRON yellow-b
2R	10829097	2R_10829097_SNP [dm3] 2R_14941592_SNP [dm6]	A	G	1.733e^-4	0.613	UPSTREAM CG10257 DOWNSTREAM Lap1 INTERGENIC
3L	7254293	3L_7254293_SNP [dm3] 3L_7261193_SNP [dm6]	A	G	1.743e^-4	0.613	INTRON CG14830
2L	20922212	2L_20922212_SNP [dm3] 2L_20922212_SNP [dm6]	G	A	1.751e^-4	0.613	INTRON Mtp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6272734	2L_6272734_SNP [dm3] 2L_6272734_SNP [dm6]	A	C	1.755e^-4	0.613	INTRON Ddr
2L	21284018	2L_21284018_SNP [dm3] 2L_21284018_SNP [dm6]	T	G	1.758e^-4	0.613	EXON Cyp6t2Psi
2L	15492259	2L_15492259_SNP [dm3] 2L_15492259_SNP [dm6]	G	A	1.760e^-4	0.613	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6804567	2L_6804567_SNP [dm3] 2L_6804567_SNP [dm6]	T	A	1.768e^-4	0.613	UTR_3_PRIME CG17375 DOWNSTREAM CG17375 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19715490	3R_19715490_SNP [dm3] 3R_23889768_SNP [dm6]	A	T	1.769e^-4	0.613	START_GAINED Pli UTR_5_PRIME Pli DOWNSTREAM TfIIA-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2390753	2L_2390753_SNP [dm3] 2L_2390753_SNP [dm6]	T	A	1.771e^-4	0.613	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3L	19544643	3L_19544643_SNP [dm3] 3L_19551543_SNP [dm6]	G	T	1.775e^-4	0.613	NON_SYNONYMOUS_CODING l_3_76BDr UPSTREAM CG9300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	2708518	3R_2708518_SNP [dm3] 3R_6882796_SNP [dm6]	G	C	1.777e^-4	0.613	INTRON CR44931	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	1934947	3L_1934947_SNP [dm3] 3L_1934947_SNP [dm6]	A	T	1.782e^-4	0.613	NON_SYNONYMOUS_CODING CG5687
3R	12509139	3R_12509139_SNP [dm3] 3R_16683417_SNP [dm6]	C	T	1.785e^-4	0.613	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	11148850	2R_11148850_SNP [dm3] 2R_15261345_SNP [dm6]	T	A	1.785e^-4	0.613	SYNONYMOUS_CODING ItgalphaPS4	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16570632	3L_16570632_SNP [dm3] 3L_16577532_SNP [dm6]	T	C	1.791e^-4	0.613	NON_SYNONYMOUS_CODING nxf2 DOWNSTREAM mbf1	transposable element FlyBase
2R	18753466	2R_18753466_SNP [dm3] 2R_22865943_SNP [dm6]	G	T	1.791e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2781309	3R_2781309_SNP [dm3] 3R_6955587_SNP [dm6]	T	C	1.797e^-4	0.613	INTRON Antp
3L	17036259	3L_17036259_SNP [dm3] 3L_17043159_SNP [dm6]	C	T	1.804e^-4	0.613	NON_SYNONYMOUS_CODING Papst2 UPSTREAM scaf6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	11796040	2R_11796040_DEL [dm3] 2R_15908535_DEL [dm6]	ATCGCCACCCTTCA...	A	1.810e^-4	0.613	INTRON sli	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10159375	3L_10159375_SNP [dm3] 3L_10166275_SNP [dm6]	G	A	1.812e^-4	0.613	SYNONYMOUS_CODING CG6628 INTRON dpr10
3L	18152746	3L_18152746_SNP [dm3] 3L_18159646_SNP [dm6]	C	T	1.814e^-4	0.613	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6423626	X_6423626_SNP [dm3] X_6529593_SNP [dm6]	T	C	1.824e^-4	0.613	SYNONYMOUS_CODING Spat
2R	5220702	2R_5220702_SNP [dm3] 2R_9333197_SNP [dm6]	G	A	1.824e^-4	0.613	INTRON CG13954 & 1 other
3L	12124980	3L_12124980_SNP [dm3] 3L_12131880_SNP [dm6]	A	T	1.839e^-4	0.613	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20688340	2L_20688340_SNP [dm3] 2L_20688340_SNP [dm6]	G	A	1.841e^-4	0.613	SPLICE_SITE_REGION Hr38 INTRON Hr38	TF binding site mE1_TFBS_chinmo
3R	17881283	3R_17881283_SNP [dm3] 3R_22055561_SNP [dm6]	C	A	1.845e^-4	0.613	INTRON how
2L	7537704	2L_7537704_DEL [dm3] 2L_7537704_DEL [dm6]	CCAGCAATGC	T	1.853e^-4	0.613	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14450506	3R_14450506_SNP [dm3] 3R_18624784_SNP [dm6]	A	G	1.853e^-4	0.613	INTRON qin
X	16502441	X_16502441_SNP [dm3] X_16608408_SNP [dm6]	A	T	1.854e^-4	0.613	INTRON Nup153	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18930447	2L_18930447_SNP [dm3] 2L_18930447_SNP [dm6]	G	A	1.858e^-4	0.613	INTRON ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	722584	3L_722584_SNP [dm3] 3L_722584_SNP [dm6]	T	G	1.860e^-4	0.613	INTERGENIC
3R	16670003	3R_16670003_SNP [dm3] 3R_20844281_SNP [dm6]	A	G	1.873e^-4	0.613	SYNONYMOUS_CODING CG15695	TF binding site mE1_TFBS_sens
2L	7538042	2L_7538042_SNP [dm3] 2L_7538042_SNP [dm6]	G	A	1.875e^-4	0.613	INTRON RapGAP1	TF binding site mE1_TFBS_zfh1
3L	17068663	3L_17068663_SNP [dm3] 3L_17075563_SNP [dm6]	G	A	1.875e^-4	0.613	UTR_3_PRIME Rbp6 INTRON Rbp6
3R	22106984	3R_22106984_SNP [dm3] 3R_26281262_SNP [dm6]	A	T	1.879e^-4	0.613	INTERGENIC
3R	7305106	3R_7305106_SNP [dm3] 3R_11479384_SNP [dm6]	A	G	1.881e^-4	0.613	INTERGENIC
3R	16674831	3R_16674831_SNP [dm3] 3R_20849109_SNP [dm6]	T	A	1.881e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15702474	3L_15702474_SNP [dm3] 3L_15709374_SNP [dm6]	T	C	1.882e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17881291	3R_17881291_SNP [dm3] 3R_22055569_SNP [dm6]	T	G	1.882e^-4	0.613	INTRON how
3L	17772106	3L_17772106_SNP [dm3] 3L_17779006_SNP [dm6]	C	T	1.883e^-4	0.613	INTERGENIC
3L	2016421	3L_2016421_SNP [dm3] 3L_2016421_SNP [dm6]	A	G	1.891e^-4	0.613	INTERGENIC
2L	4176474	2L_4176474_SNP [dm3] 2L_4176474_SNP [dm6]	G	A	1.892e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10119919	2L_10119919_SNP [dm3] 2L_10119919_SNP [dm6]	G	A	1.895e^-4	0.613	INTRON CG44153 & 1 other
2R	11147967	2R_11147967_SNP [dm3] 2R_15260462_SNP [dm6]	A	G	1.897e^-4	0.613	INTRON ItgalphaPS4
2R	18122630	2R_18122630_SNP [dm3] 2R_22235125_SNP [dm6]	A	T	1.911e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12106174	2L_12106174_SNP [dm3] 2L_12106174_SNP [dm6]	T	C	1.911e^-4	0.613	SYNONYMOUS_CODING Aats-thr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12106021	2L_12106021_SNP [dm3] 2L_12106021_SNP [dm6]	A	G	1.912e^-4	0.613	SYNONYMOUS_CODING Aats-thr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11694766	3R_11694766_SNP [dm3] 3R_15869044_SNP [dm6]	A	G	1.913e^-4	0.613	INTRON CG31183
2R	5642227	2R_5642227_SNP [dm3] 2R_9754722_SNP [dm6]	C	T	1.914e^-4	0.613	INTRON trpl
3L	11624668	3L_11624668_SNP [dm3] 3L_11631568_SNP [dm6]	C	A	1.920e^-4	0.613	UTR_5_PRIME CG32091 DOWNSTREAM CG18815
2R	16080940	2R_16080940_SNP [dm3] 2R_20193435_SNP [dm6]	T	C	1.925e^-4	0.613	INTERGENIC
2L	20599625	2L_20599625_SNP [dm3] 2L_20599625_SNP [dm6]	A	G	1.925e^-4	0.613	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4849546	3L_4849546_SNP [dm3] 3L_4849546_SNP [dm6]	C	T	1.931e^-4	0.613	UTR_3_PRIME CG32237
2L	19456278	2L_19456278_SNP [dm3] 2L_19456278_SNP [dm6]	A	G	1.953e^-4	0.613	INTRON CG10026
3L	22631673	3L_22631673_SNP [dm3] 3L_22638573_SNP [dm6]	T	C	1.955e^-4	0.613	UPSTREAM CG14459 INTERGENIC
2L	20588489	2L_20588489_SNP [dm3] 2L_20588489_SNP [dm6]	T	G	1.962e^-4	0.613	INTRON CR44909
3R	2718731	3R_2718731_SNP [dm3] 3R_6893009_SNP [dm6]	T	G	1.966e^-4	0.613	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	4346012	2R_4346012_SNP [dm3] 2R_8458507_SNP [dm6]	A	G	1.967e^-4	0.613	UPSTREAM Mal-A4 & 1 other INTERGENIC
3L	6598992	3L_6598992_SNP [dm3] 3L_6605892_SNP [dm6]	T	C	1.983e^-4	0.613	SYNONYMOUS_CODING zpg UPSTREAM CG8368 INTRON CG8368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	16670696	3R_16670696_SNP [dm3] 3R_20844974_SNP [dm6]	A	T	1.984e^-4	0.613	UTR_3_PRIME CG15695
2R	11149105	2R_11149105_SNP [dm3] 2R_15261600_SNP [dm6]	A	T	1.996e^-4	0.613	NON_SYNONYMOUS_CODING ItgalphaPS4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18597169	2L_18597169_SNP [dm3] 2L_18597169_SNP [dm6]	C	A	1.997e^-4	0.613	UPSTREAM amos INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18776709	2R_18776709_SNP [dm3] 2R_22889186_SNP [dm6]	T	C	2.001e^-4	0.613	SYNONYMOUS_CODING MED23 UPSTREAM Gmer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	18117825	2R_18117825_SNP [dm3] 2R_22230320_SNP [dm6]	G	C	2.002e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18197103	2R_18197103_SNP [dm3] 2R_22309598_SNP [dm6]	G	C	2.002e^-4	0.613	INTRON wdp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11899978	2R_11899978_SNP [dm3] 2R_16012473_SNP [dm6]	T	C	2.009e^-4	0.613	SYNONYMOUS_CODING CG8389	TF binding site BDTNP1_TFBS_sna
2R	18041932	2R_18041932_SNP [dm3] 2R_22154427_SNP [dm6]	G	C	2.010e^-4	0.613	INTRON a
2L	18526758	2L_18526758_SNP [dm3] 2L_18526758_SNP [dm6]	G	T	2.010e^-4	0.613	INTRON CG10211	TF binding site mE1_TFBS_cad
2L	1714758	2L_1714758_SNP [dm3] 2L_1714758_SNP [dm6]	C	G	2.016e^-4	0.613	INTRON frtz	TF binding site mE1_TFBS_chinmo
2L	21005475	2L_21005475_SNP [dm3] 2L_21005475_SNP [dm6]	T	C	2.019e^-4	0.613	INTRON CG42238
3L	10159435	3L_10159435_SNP [dm3] 3L_10166335_SNP [dm6]	G	T	2.026e^-4	0.613	SYNONYMOUS_CODING CG6628 INTRON dpr10
3L	5304731	3L_5304731_SNP [dm3] 3L_5311631_SNP [dm6]	T	C	2.028e^-4	0.613	INTERGENIC
2L	15479001	2L_15479001_SNP [dm3] 2L_15479001_SNP [dm6]	T	C	2.028e^-4	0.613	UPSTREAM sna INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12649079	2L_12649079_SNP [dm3] 2L_12649079_SNP [dm6]	A	T	2.028e^-4	0.613	INTERGENIC
X	20142537	X_20142537_SNP [dm3] X_20271511_SNP [dm6]	T	C	2.029e^-4	0.613	INTERGENIC
3R	5739850	3R_5739850_SNP [dm3] 3R_9914128_SNP [dm6]	G	T	2.030e^-4	0.613	INTRON Glut4EF
2R	17076401	2R_17076401_SNP [dm3] 2R_21188896_SNP [dm6]	T	G	2.031e^-4	0.613	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
2R	14143213	2R_14143213_SNP [dm3] 2R_18255708_SNP [dm6]	A	T	2.037e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2333959	X_2333959_SNP [dm3] X_2439926_SNP [dm6]	A	C	2.050e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20444649	X_20444649_SNP [dm3] X_20573622_SNP [dm6]	G	A	2.053e^-4	0.613	UPSTREAM CG42580 INTERGENIC
2R	17035691	2R_17035691_SNP [dm3] 2R_21148186_SNP [dm6]	G	C	2.060e^-4	0.613	UPSTREAM CG15657 DOWNSTREAM CG30389 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	8344746	X_8344746_SNP [dm3] X_8450713_SNP [dm6]	T	G	2.063e^-4	0.613	INTRON org-1
2R	17760347	2R_17760347_SNP [dm3] 2R_21872842_SNP [dm6]	T	C	2.073e^-4	0.613	INTRON Fili	TF binding site mE1_TFBS_D mE1_TFBS_sens
3L	10596689	3L_10596689_SNP [dm3] 3L_10603589_SNP [dm6]	G	C	2.086e^-4	0.613	INTERGENIC
2R	3907287	2R_3907287_SNP [dm3] 2R_8019782_SNP [dm6]	G	A	2.086e^-4	0.613	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	12585226	2R_12585226_SNP [dm3] 2R_16697721_SNP [dm6]	G	A	2.086e^-4	0.613	INTRON CG30463
3L	15181044	3L_15181044_SNP [dm3] 3L_15187944_SNP [dm6]	G	T	2.094e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8613700	3R_8613700_SNP [dm3] 3R_12787978_SNP [dm6]	G	T	2.106e^-4	0.613	INTERGENIC
3L	11381849	3L_11381849_SNP [dm3] 3L_11388749_SNP [dm6]	A	G	2.107e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7589725	X_7589725_INS [dm3] X_7695692_INS [dm6]	A	ATAAA	2.109e^-4	0.613	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	18503810	X_18503810_SNP [dm3] X_18609777_SNP [dm6]	C	T	2.109e^-4	0.613	SYNONYMOUS_CODING CG15040	TF binding site mE1_TFBS_chinmo
2L	20527678	2L_20527678_SNP [dm3] 2L_20527678_SNP [dm6]	C	T	2.110e^-4	0.613	INTERGENIC
2L	20527813	2L_20527813_SNP [dm3] 2L_20527813_SNP [dm6]	G	A	2.112e^-4	0.613	INTERGENIC
2L	18526749	2L_18526749_SNP [dm3] 2L_18526749_SNP [dm6]	C	A	2.115e^-4	0.613	INTRON CG10211	TF binding site mE1_TFBS_cad
2L	18526756	2L_18526756_SNP [dm3] 2L_18526756_SNP [dm6]	C	T	2.115e^-4	0.613	INTRON CG10211	TF binding site mE1_TFBS_cad
3R	14187174	3R_14187174_SNP [dm3] 3R_18361452_SNP [dm6]	C	G	2.116e^-4	0.613	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
3R	17388833	3R_17388833_DEL [dm3] 3R_21563111_DEL [dm6]	AAACA	A	2.116e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_inv
2L	20543963	2L_20543963_SNP [dm3] 2L_20543963_SNP [dm6]	T	C	2.118e^-4	0.613	INTERGENIC
3L	11504874	3L_11504874_INS [dm3] 3L_11511774_INS [dm6]	A	AGGAAGCGTTTTCGACCA...	2.120e^-4	0.613	UPSTREAM Sgs3 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1
3L	6645889	3L_6645889_SNP [dm3] 3L_6652789_SNP [dm6]	T	C	2.120e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16037560	3L_16037560_SNP [dm3] 3L_16044460_SNP [dm6]	A	T	2.120e^-4	0.613	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	27574917	3R_27574917_SNP [dm3] 3R_31749195_SNP [dm6]	C	T	2.121e^-4	0.613	INTRON CG1910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	9208282	3L_9208282_SNP [dm3] 3L_9215182_SNP [dm6]	G	T	2.121e^-4	0.613	UTR_3_PRIME CG4476
3R	27474451	3R_27474451_SNP [dm3] 3R_31648729_SNP [dm6]	A	T	2.121e^-4	0.613	INTRON kek6
2L	10852190	2L_10852190_SNP [dm3] 2L_10852190_SNP [dm6]	C	A	2.125e^-4	0.613	UPSTREAM CG43129 INTRON CG43129
2L	10568057	2L_10568057_SNP [dm3] 2L_10568057_SNP [dm6]	T	G	2.127e^-4	0.613	DOWNSTREAM CG6138 INTRON Trim9
2R	7296271	2R_7296271_SNP [dm3] 2R_11408766_SNP [dm6]	A	G	2.129e^-4	0.613	SYNONYMOUS_CODING CG30026 DOWNSTREAM CG7759	TF binding site mE1_TFBS_bab1
2L	2390755	2L_2390755_SNP [dm3] 2L_2390755_SNP [dm6]	A	T	2.131e^-4	0.613	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
2R	9975885	2R_9975885_SNP [dm3] 2R_14088380_SNP [dm6]	A	C	2.137e^-4	0.613	INTRON Prosap
3L	15181047	3L_15181047_SNP [dm3] 3L_15187947_SNP [dm6]	T	G	2.137e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_inv
X	14848118	X_14848118_SNP [dm3] X_14954085_SNP [dm6]	C	G	2.140e^-4	0.613	UPSTREAM pdgy & 1 other DOWNSTREAM CG9030 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8120265	2L_8120265_SNP [dm3] 2L_8120265_SNP [dm6]	A	G	2.159e^-4	0.613	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3428079	2R_3428079_SNP [dm3] 2R_7540574_SNP [dm6]	T	C	2.162e^-4	0.613	UPSTREAM CG1598 INTRON Corin
X	5844706	X_5844706_SNP [dm3] X_5950673_SNP [dm6]	A	G	2.180e^-4	0.613	DOWNSTREAM CG6041 INTRON CG32755	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7758499	X_7758499_SNP [dm3] X_7864466_SNP [dm6]	C	T	2.180e^-4	0.613	DOWNSTREAM Ir7b INTERGENIC
2L	20536593	2L_20536593_SNP [dm3] 2L_20536593_SNP [dm6]	T	C	2.185e^-4	0.613	INTERGENIC
2L	20542547	2L_20542547_SNP [dm3] 2L_20542547_SNP [dm6]	A	T	2.186e^-4	0.613	INTERGENIC
3R	14187168	3R_14187168_SNP [dm3] 3R_18361446_SNP [dm6]	T	A	2.193e^-4	0.613	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2R	18776610	2R_18776610_SNP [dm3] 2R_22889087_SNP [dm6]	C	G	2.204e^-4	0.613	UPSTREAM Gmer INTRON MED23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	20558858	X_20558858_SNP [dm3] X_20687831_SNP [dm6]	A	G	2.207e^-4	0.613	DOWNSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	8502858	2R_8502858_SNP [dm3] 2R_12615353_SNP [dm6]	T	A	2.212e^-4	0.613	UPSTREAM Galphaq INTRON Galphaq & 1 other	TF binding site mE1_TFBS_sens
2L	14537146	2L_14537146_SNP [dm3] 2L_14537146_SNP [dm6]	T	C	2.212e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16698671	2L_16698671_SNP [dm3] 2L_16698671_SNP [dm6]	A	C	2.214e^-4	0.613	UPSTREAM mir-9b & 1 other DOWNSTREAM mir-9c & 2 others INTRON grp
2L	9399253	2L_9399253_SNP [dm3] 2L_9399253_SNP [dm6]	A	G	2.217e^-4	0.613	INTRON Shawl
2R	13805874	2R_13805874_SNP [dm3] 2R_17918369_SNP [dm6]	T	A	2.220e^-4	0.613	INTRON Elk
2L	4194544	2L_4194544_SNP [dm3] 2L_4194544_SNP [dm6]	C	T	2.221e^-4	0.613	INTRON CG3714
2L	19697115	2L_19697115_SNP [dm3] 2L_19697115_SNP [dm6]	A	G	2.224e^-4	0.613	INTRON Lar	TF binding site mE1_TFBS_HSA
3L	11328480	3L_11328480_SNP [dm3] 3L_11335380_SNP [dm6]	C	A	2.228e^-4	0.613	INTERGENIC
2R	2955435	2R_2955435_SNP [dm3] 2R_7067930_SNP [dm6]	T	C	2.232e^-4	0.613	UPSTREAM CG12836 INTERGENIC
2L	15492296	2L_15492296_SNP [dm3] 2L_15492296_SNP [dm6]	T	C	2.232e^-4	0.613	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16413247	2L_16413247_SNP [dm3] 2L_16413247_SNP [dm6]	C	T	2.233e^-4	0.613	INTRON CG5888	TF binding site mE1_TFBS_HSA
2L	16790036	2L_16790036_SNP [dm3] 2L_16790036_SNP [dm6]	T	G	2.235e^-4	0.613	INTRON Cyt-b5-r
2R	18773978	2R_18773978_SNP [dm3] 2R_22886455_SNP [dm6]	G	A	2.240e^-4	0.613	UTR_5_PRIME asrij UPSTREAM asrij & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	5916861	X_5916861_SNP [dm3] X_6022828_SNP [dm6]	C	G	2.242e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16501718	X_16501718_SNP [dm3] X_16607685_SNP [dm6]	G	A	2.243e^-4	0.613	INTRON Nup153	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	16501719	X_16501719_SNP [dm3] X_16607686_SNP [dm6]	C	T	2.243e^-4	0.613	INTRON Nup153	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	3633866	2L_3633866_SNP [dm3] 2L_3633866_SNP [dm6]	G	C	2.244e^-4	0.613	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20523172	2L_20523172_SNP [dm3] 2L_20523172_SNP [dm6]	G	C	2.246e^-4	0.613	INTERGENIC
2R	18128278	2R_18128278_SNP [dm3] 2R_22240773_SNP [dm6]	C	A	2.246e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	14908560	X_14908560_SNP [dm3] X_15014527_SNP [dm6]	G	A	2.249e^-4	0.613	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2R	11139684	2R_11139684_SNP [dm3] 2R_15252179_SNP [dm6]	G	A	2.249e^-4	0.613	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	19430393	3R_19430393_SNP [dm3] 3R_23604671_SNP [dm6]	G	T	2.250e^-4	0.613	INTRON CG10184	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2458133	X_2458133_SNP [dm3] X_2564100_SNP [dm6]	T	C	2.256e^-4	0.613	INTRON Pdfr	TF binding site mE1_TFBS_inv
3R	9637283	3R_9637283_SNP [dm3] 3R_13811561_SNP [dm6]	C	G	2.257e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6234270	2R_6234270_SNP [dm3] 2R_10346765_SNP [dm6]	C	T	2.267e^-4	0.613	INTRON CG42732
2R	16135646	2R_16135646_SNP [dm3] 2R_20248141_SNP [dm6]	C	T	2.267e^-4	0.613	UTR_3_PRIME CG9864 UPSTREAM ppk6	TF binding site mE1_TFBS_cad
X	6242419	X_6242419_SNP [dm3] X_6348386_SNP [dm6]	C	T	2.269e^-4	0.613	SYNONYMOUS_CODING CG3847 DOWNSTREAM CG3446	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	12670961	3L_12670961_DEL [dm3] 3L_12677861_DEL [dm6]	TA	G	2.271e^-4	0.613	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	22631373	3L_22631373_SNP [dm3] 3L_22638273_SNP [dm6]	T	C	2.272e^-4	0.613	UPSTREAM CG14459 INTERGENIC
3R	2718729	3R_2718729_SNP [dm3] 3R_6893007_SNP [dm6]	G	T	2.273e^-4	0.613	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	12420192	2R_12420192_SNP [dm3] 2R_16532687_SNP [dm6]	T	C	2.281e^-4	0.613	UTR_3_PRIME Sema-2a
X	3111692	X_3111692_DEL [dm3] X_3217659_DEL [dm6]	TATCTGCTGAATT...	T	2.284e^-4	0.613	INTRON dnc
3L	14922914	3L_14922914_SNP [dm3] 3L_14929814_SNP [dm6]	A	G	2.287e^-4	0.613	INTRON DCX-EMAP
2R	3930336	2R_3930336_DEL [dm3] 2R_8042831_DEL [dm6]	ATAA	A	2.295e^-4	0.613	DOWNSTREAM Optix INTERGENIC	TF binding site mE1_TFBS_cnc
3L	11328465	3L_11328465_SNP [dm3] 3L_11335365_SNP [dm6]	G	A	2.296e^-4	0.613	INTERGENIC
2L	1343973	2L_1343973_SNP [dm3] 2L_1343973_SNP [dm6]	T	A	2.297e^-4	0.613	SYNONYMOUS_CODING CG33922 UPSTREAM Cdlc2
2L	1343991	2L_1343991_SNP [dm3] 2L_1343991_SNP [dm6]	G	T	2.297e^-4	0.613	NON_SYNONYMOUS_CODING CG33922 UPSTREAM Cdlc2
2L	1343994	2L_1343994_SNP [dm3] 2L_1343994_SNP [dm6]	A	G	2.297e^-4	0.613	SYNONYMOUS_CODING CG33922 UPSTREAM Cdlc2
3L	4959614	3L_4959614_SNP [dm3] 3L_4959614_SNP [dm6]	T	A	2.301e^-4	0.613	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18153584	2R_18153584_SNP [dm3] 2R_22266079_SNP [dm6]	A	G	2.306e^-4	0.613	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20928143	2L_20928143_SNP [dm3] 2L_20928143_SNP [dm6]	G	T	2.316e^-4	0.613	UPSTREAM CR33319 & 1 other INTERGENIC	transposable element FlyBase
2R	19001043	2R_19001043_SNP [dm3] 2R_23113520_SNP [dm6]	T	A	2.322e^-4	0.613	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2441567	3L_2441567_INS [dm3] 3L_2441567_INS [dm6]	T	TATTT	2.323e^-4	0.613	INTRON CG45186
2L	3617347	2L_3617347_SNP [dm3] 2L_3617347_SNP [dm6]	T	A	2.323e^-4	0.613	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2256434	2L_2256434_SNP [dm3] 2L_2256434_SNP [dm6]	G	A	2.326e^-4	0.613	INTERGENIC
2R	7442187	2R_7442187_SNP [dm3] 2R_11554682_SNP [dm6]	A	T	2.327e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	8695425	2L_8695425_SNP [dm3] 2L_8695425_SNP [dm6]	A	G	2.332e^-4	0.613	INTRON Hnf4
3L	14759098	3L_14759098_SNP [dm3] 3L_14765998_SNP [dm6]	T	C	2.335e^-4	0.613	UTR_3_PRIME CG9384
2R	18780340	2R_18780340_SNP [dm3] 2R_22892817_SNP [dm6]	G	C	2.335e^-4	0.613	NON_SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
2L	20903748	2L_20903748_SNP [dm3] 2L_20903748_SNP [dm6]	T	C	2.340e^-4	0.613	INTRON sky & 1 other
3L	12251728	3L_12251728_SNP [dm3] 3L_12258628_SNP [dm6]	A	G	2.341e^-4	0.613	INTRON app
3L	1843522	3L_1843522_SNP [dm3] 3L_1843522_SNP [dm6]	G	A	2.344e^-4	0.613	INTERGENIC
3R	2499802	3R_2499802_SNP [dm3] 3R_6674080_SNP [dm6]	T	A	2.350e^-4	0.613	INTRON lab	regulatory region FlyBase REDfly_CRMs
3R	4300714	3R_4300714_SNP [dm3] 3R_8474992_SNP [dm6]	A	C	2.350e^-4	0.613	INTRON CG45263
2R	5336501	2R_5336501_SNP [dm3] 2R_9448996_SNP [dm6]	G	T	2.354e^-4	0.613	INTRON Camta
2L	16789921	2L_16789921_SNP [dm3] 2L_16789921_SNP [dm6]	A	G	2.364e^-4	0.613	INTRON Cyt-b5-r	TF binding site mE1_TFBS_cad
2R	18129934	2R_18129934_INS [dm3] 2R_22242429_INS [dm6]	A	AA	2.376e^-4	0.613	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	6589219	3L_6589219_SNP [dm3] 3L_6596119_SNP [dm6]	C	G	2.376e^-4	0.613	SYNONYMOUS_CODING ndl
2R	2805138	2R_2805138_SNP [dm3] 2R_6917633_SNP [dm6]	A	G	2.382e^-4	0.613	INTRON CG30158	TF binding site mE1_TFBS_cad
3L	11057417	3L_11057417_SNP [dm3] 3L_11064317_SNP [dm6]	A	G	2.385e^-4	0.613	SYNONYMOUS_CODING CG32075 UPSTREAM SuUR & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	14289278	2L_14289278_SNP [dm3] 2L_14289278_SNP [dm6]	T	A	2.386e^-4	0.613	INTRON wb	TF binding site mE1_TFBS_cad
3L	6632797	3L_6632797_SNP [dm3] 3L_6639697_SNP [dm6]	C	A	2.388e^-4	0.613	INTERGENIC
2L	21690228	2L_21690228_SNP [dm3] 2L_21690228_SNP [dm6]	T	A	2.389e^-4	0.613	INTRON CG31619	TF binding site BDTNP1_TFBS_dl
2L	6354579	2L_6354579_SNP [dm3] 2L_6354579_SNP [dm6]	T	A	2.392e^-4	0.613	UPSTREAM ppk14 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	12554382	3R_12554382_SNP [dm3] 3R_16728660_SNP [dm6]	T	G	2.394e^-4	0.613	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7345252	3L_7345252_DEL [dm3] 3L_7352152_DEL [dm6]	GATG	G	2.394e^-4	0.613	INTRON qm
3R	2726993	3R_2726993_SNP [dm3] 3R_6901271_SNP [dm6]	T	A	2.397e^-4	0.613	INTRON Antp
2L	10485968	2L_10485968_SNP [dm3] 2L_10485968_SNP [dm6]	G	A	2.398e^-4	0.613	SYNONYMOUS_CODING CG7456 DOWNSTREAM Grip75
3L	19541754	3L_19541754_SNP [dm3] 3L_19548654_SNP [dm6]	G	A	2.400e^-4	0.613	INTRON l_3_76BDr
3R	14872271	3R_14872271_SNP [dm3] 3R_19046549_SNP [dm6]	A	T	2.403e^-4	0.613	UTR_3_PRIME cdi	TF binding site mE1_TFBS_cad
2L	21001901	2L_21001901_SNP [dm3] 2L_21001901_SNP [dm6]	T	A	2.405e^-4	0.613	INTRON CG42238
3L	9185166	3L_9185166_SNP [dm3] 3L_9192066_SNP [dm6]	C	T	2.412e^-4	0.613	INTERGENIC
2R	19599383	2R_19599383_SNP [dm3] 2R_23711860_SNP [dm6]	C	T	2.415e^-4	0.613	INTERGENIC
X	15110217	X_15110217_INS [dm3] X_15216184_INS [dm6]	A	TATGT	2.416e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11561153	2R_11561153_SNP [dm3] 2R_15673648_SNP [dm6]	G	T	2.421e^-4	0.613	INTRON fus
3R	13099740	3R_13099740_SNP [dm3] 3R_17274018_SNP [dm6]	C	A	2.423e^-4	0.613	INTERGENIC
X	19171190	X_19171190_SNP [dm3] X_19277157_SNP [dm6]	T	G	2.434e^-4	0.613	UPSTREAM CG32537 & 1 other DOWNSTREAM CG8028 INTERGENIC
2R	15274347	2R_15274347_SNP [dm3] 2R_19386842_SNP [dm6]	A	T	2.435e^-4	0.613	SPLICE_SITE_REGION CG10081 INTRON CG10081
2L	20521109	2L_20521109_SNP [dm3] 2L_20521109_SNP [dm6]	T	G	2.437e^-4	0.613	INTERGENIC
2L	8120263	2L_8120263_SNP [dm3] 2L_8120263_SNP [dm6]	C	T	2.437e^-4	0.613	SYNONYMOUS_CODING mon2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14196665	3R_14196665_SNP [dm3] 3R_18370943_SNP [dm6]	T	A	2.440e^-4	0.613	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6273580	2L_6273580_DEL [dm3] 2L_6273580_DEL [dm6]	CTACAAC	C	2.442e^-4	0.613	INTRON Ddr
3L	16974239	3L_16974239_SNP [dm3] 3L_16981139_SNP [dm6]	T	G	2.443e^-4	0.613	SYNONYMOUS_CODING Exn	TF binding site mE1_TFBS_cad
3L	18647680	3L_18647680_SNP [dm3] 3L_18654580_SNP [dm6]	C	T	2.445e^-4	0.613	INTRON MYPT-75D
3R	12709186	3R_12709186_SNP [dm3] 3R_16883464_SNP [dm6]	A	T	2.446e^-4	0.613	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19564473	3R_19564473_SNP [dm3] 3R_23738751_SNP [dm6]	A	G	2.448e^-4	0.613	INTRON Hmgcr
X	14254306	X_14254306_SNP [dm3] X_14360273_SNP [dm6]	A	T	2.448e^-4	0.613	INTRON dpr8
X	5319336	X_5319336_SNP [dm3] X_5425303_SNP [dm6]	C	A	2.473e^-4	0.613	SYNONYMOUS_CODING CG4165	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18268188	2R_18268188_SNP [dm3] 2R_22380683_SNP [dm6]	T	A	2.474e^-4	0.613	INTRON wrapper	TF binding site mE1_TFBS_cad
3L	5861567	3L_5861567_SNP [dm3] 3L_5868467_SNP [dm6]	T	A	2.476e^-4	0.613	INTERGENIC
3L	13656806	3L_13656806_SNP [dm3] 3L_13663706_SNP [dm6]	T	C	2.476e^-4	0.613	INTRON bru-3
3R	14187211	3R_14187211_SNP [dm3] 3R_18361489_SNP [dm6]	A	T	2.480e^-4	0.613	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2R	17141194	2R_17141194_SNP [dm3] 2R_21253689_SNP [dm6]	T	A	2.480e^-4	0.613	INTERGENIC
3R	11956133	3R_11956133_SNP [dm3] 3R_16130411_SNP [dm6]	C	T	2.481e^-4	0.613	INTRON Sb
2L	5735737	2L_5735737_SNP [dm3] 2L_5735737_SNP [dm6]	T	G	2.483e^-4	0.613	INTRON CG11030 & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	6577177	3L_6577177_SNP [dm3] 3L_6584077_SNP [dm6]	C	G	2.488e^-4	0.613	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_inv
3L	14286230	3L_14286230_SNP [dm3] 3L_14293130_SNP [dm6]	A	T	2.488e^-4	0.613	INTRON fz
X	20192198	X_20192198_DEL [dm3] X_20321171_DEL [dm6]	TTCGGTTCCT	T	2.489e^-4	0.613	INTRON CG1504	TF binding site mE1_TFBS_chinmo
2R	16390175	2R_16390175_SNP [dm3] 2R_20502670_SNP [dm6]	G	A	2.490e^-4	0.613	UPSTREAM Obp57c INTERGENIC	regulatory region REDfly_CRMs
2R	14499088	2R_14499088_SNP [dm3] 2R_18611583_SNP [dm6]	T	G	2.490e^-4	0.613	START_GAINED GEFmeso UTR_5_PRIME GEFmeso DOWNSTREAM CG42697	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	20555530	2L_20555530_SNP [dm3] 2L_20555530_SNP [dm6]	T	G	2.493e^-4	0.613	INTERGENIC
3L	20893612	3L_20893612_SNP [dm3] 3L_20900512_SNP [dm6]	G	A	2.505e^-4	0.613	INTERGENIC
3L	12474838	3L_12474838_SNP [dm3] 3L_12481738_SNP [dm6]	T	C	2.511e^-4	0.613	UPSTREAM CG33725 INTRON CG10663
3L	22631610	3L_22631610_SNP [dm3] 3L_22638510_SNP [dm6]	A	C	2.511e^-4	0.613	UPSTREAM CG14459 INTERGENIC
3R	1703646	3R_1703646_SNP [dm3] 3R_5877924_SNP [dm6]	C	A	2.514e^-4	0.613	NON_SYNONYMOUS_CODING CG34113 INTRON CG34113	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21593203	3L_21593203_SNP [dm3] 3L_21600103_SNP [dm6]	A	G	2.516e^-4	0.613	INTRON TfAP-2
2R	4211640	2R_4211640_SNP [dm3] 2R_8324135_SNP [dm6]	G	T	2.528e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14226026	2R_14226026_SNP [dm3] 2R_18338521_SNP [dm6]	A	T	2.528e^-4	0.613	INTRON sbb	TF binding site BDTNP1_TFBS_dl
2L	20138020	2L_20138020_SNP [dm3] 2L_20138020_SNP [dm6]	A	G	2.532e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6835376	2R_6835376_SNP [dm3] 2R_10947871_SNP [dm6]	T	C	2.535e^-4	0.613	DOWNSTREAM CR45228 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	16840693	2R_16840693_SNP [dm3] 2R_20953188_SNP [dm6]	G	A	2.537e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20081171	3L_20081171_SNP [dm3] 3L_20088071_SNP [dm6]	G	C	2.543e^-4	0.613	INTRON sNPF-R	TF binding site mE1_TFBS_HSA
2R	16230592	2R_16230592_SNP [dm3] 2R_20343087_SNP [dm6]	A	T	2.544e^-4	0.613	UPSTREAM CG13870 DOWNSTREAM CG16739 INTERGENIC
3L	17145631	3L_17145631_SNP [dm3] 3L_17152531_SNP [dm6]	C	G	2.545e^-4	0.613	INTRON Rbp6
2L	7053617	2L_7053617_SNP [dm3] 2L_7053617_SNP [dm6]	T	C	2.551e^-4	0.613	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16759555	2L_16759555_SNP [dm3] 2L_16759555_SNP [dm6]	G	A	2.562e^-4	0.613	INTRON ppk17
3L	1843427	3L_1843427_SNP [dm3] 3L_1843427_SNP [dm6]	A	C	2.562e^-4	0.613	INTERGENIC
3L	16576258	3L_16576258_SNP [dm3] 3L_16583158_SNP [dm6]	C	A	2.563e^-4	0.613	NON_SYNONYMOUS_CODING Rpn12 UPSTREAM CG4169 DOWNSTREAM CR43727	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	24252513	3R_24252513_SNP [dm3] 3R_28426791_SNP [dm6]	T	A	2.565e^-4	0.613	INTRON beat-VI
2R	16245719	2R_16245719_SNP [dm3] 2R_20358214_SNP [dm6]	A	G	2.566e^-4	0.613	INTERGENIC
X	16822842	X_16822842_SNP [dm3] X_16928809_SNP [dm6]	G	A	2.567e^-4	0.613	INTRON CG4928
X	10828015	X_10828015_SNP [dm3] X_10933982_SNP [dm6]	A	G	2.568e^-4	0.613	INTRON Myo10A
3L	13344579	3L_13344579_SNP [dm3] 3L_13351479_SNP [dm6]	G	A	2.574e^-4	0.613	SYNONYMOUS_CODING CG17687	TF binding site mE1_TFBS_HSA
2L	20522567	2L_20522567_SNP [dm3] 2L_20522567_SNP [dm6]	T	G	2.575e^-4	0.613	INTERGENIC
2L	5562835	2L_5562835_SNP [dm3] 2L_5562835_SNP [dm6]	G	T	2.578e^-4	0.613	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2L	3633919	2L_3633919_SNP [dm3] 2L_3633919_SNP [dm6]	A	G	2.579e^-4	0.613	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	6232792	2L_6232792_SNP [dm3] 2L_6232792_SNP [dm6]	A	T	2.580e^-4	0.613	DOWNSTREAM CR44823 INTERGENIC
3L	17050834	3L_17050834_SNP [dm3] 3L_17057734_SNP [dm6]	A	G	2.592e^-4	0.613	NON_SYNONYMOUS_CODING CG7724	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20780599	X_20780599_SNP [dm3] X_20909572_SNP [dm6]	T	A	2.592e^-4	0.613	INTRON shakB
3L	14960926	3L_14960926_SNP [dm3] 3L_14967826_SNP [dm6]	C	G	2.597e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2863483	2R_2863483_SNP [dm3] 2R_6975978_SNP [dm6]	T	C	2.597e^-4	0.613	UTR_3_PRIME vimar UPSTREAM Cyp6u1 & 1 other	TF binding site BDTNP1_TFBS_da
2R	4001935	2R_4001935_SNP [dm3] 2R_8114430_SNP [dm6]	G	A	2.597e^-4	0.613	UTR_3_PRIME Asap DOWNSTREAM Asap
3L	12125015	3L_12125015_SNP [dm3] 3L_12131915_SNP [dm6]	T	A	2.603e^-4	0.613	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5086151	2L_5086151_SNP [dm3] 2L_5086151_SNP [dm6]	G	T	2.606e^-4	0.613	INTRON pgant5
2R	3813917	2R_3813917_SNP [dm3] 2R_7926412_SNP [dm6]	T	G	2.609e^-4	0.613	UPSTREAM CG8791 INTERGENIC
2R	13523835	2R_13523835_SNP [dm3] 2R_17636330_SNP [dm6]	G	C	2.610e^-4	0.613	INTRON CG10936
2R	14934293	2R_14934293_SNP [dm3] 2R_19046788_SNP [dm6]	T	A	2.613e^-4	0.613	INTERGENIC
3L	16580487	3L_16580487_SNP [dm3] 3L_16587387_SNP [dm6]	C	T	2.615e^-4	0.613	NON_SYNONYMOUS_CODING CG32163 UPSTREAM Syx8 INTRON CG32163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5705438	2R_5705438_SNP [dm3] 2R_9817933_SNP [dm6]	A	G	2.617e^-4	0.613	SYNONYMOUS_CODING lectin-46Ca INTRON CG1648
X	2224974	X_2224974_SNP [dm3] X_2330941_SNP [dm6]	A	G	2.620e^-4	0.613	DOWNSTREAM Ilp6 & 1 other INTRON phl
X	17337739	X_17337739_SNP [dm3] X_17443706_SNP [dm6]	C	G	2.625e^-4	0.613	INTRON CG12994
2L	20593119	2L_20593119_SNP [dm3] 2L_20593119_SNP [dm6]	G	A	2.626e^-4	0.613	INTRON CR44909
3L	11019327	3L_11019327_SNP [dm3] 3L_11026227_SNP [dm6]	C	G	2.632e^-4	0.613	SYNONYMOUS_CODING CG32079
3R	9611394	3R_9611394_SNP [dm3] 3R_13785672_SNP [dm6]	C	T	2.634e^-4	0.613	UTR_3_PRIME Dip-B DOWNSTREAM CR45590
3R	4761593	3R_4761593_SNP [dm3] 3R_8935871_SNP [dm6]	T	C	2.642e^-4	0.613	UPSTREAM CR44020 INTRON osk
3L	7254233	3L_7254233_SNP [dm3] 3L_7261133_SNP [dm6]	A	G	2.661e^-4	0.613	INTRON CG14830
2L	1020673	2L_1020673_SNP [dm3] 2L_1020673_SNP [dm6]	A	T	2.672e^-4	0.613	INTRON IA-2
2L	10422256	2L_10422256_SNP [dm3] 2L_10422256_SNP [dm6]	G	A	2.674e^-4	0.613	SYNONYMOUS_CODING pie	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	16957188	3R_16957188_SNP [dm3] 3R_21131466_SNP [dm6]	A	G	2.677e^-4	0.613	SYNONYMOUS_CODING Ice2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7802739	2L_7802739_SNP [dm3] 2L_7802739_SNP [dm6]	G	A	2.681e^-4	0.613	SYNONYMOUS_CODING cdc14 UTR_3_PRIME cdc14 DOWNSTREAM r2d2	TF binding site mE1_TFBS_cad
2L	20684751	2L_20684751_SNP [dm3] 2L_20684751_SNP [dm6]	G	A	2.682e^-4	0.613	UTR_3_PRIME Hr38
X	20937560	X_20937560_SNP [dm3] X_21066533_SNP [dm6]	A	T	2.684e^-4	0.613	INTRON bves & 1 other
2L	20522573	2L_20522573_SNP [dm3] 2L_20522573_SNP [dm6]	G	A	2.687e^-4	0.613	INTERGENIC
3R	7656166	3R_7656166_SNP [dm3] 3R_11830444_SNP [dm6]	T	C	2.688e^-4	0.613	INTRON CG6959
3R	12697462	3R_12697462_SNP [dm3] 3R_16871740_SNP [dm6]	T	C	2.689e^-4	0.613	INTRON iab-8	TF binding site mE1_TFBS_cad
3R	18751205	3R_18751205_SNP [dm3] 3R_22925483_SNP [dm6]	T	C	2.689e^-4	0.613	DOWNSTREAM CG6660 INTRON klg
2L	21284031	2L_21284031_SNP [dm3] 2L_21284031_SNP [dm6]	G	T	2.689e^-4	0.613	EXON Cyp6t2Psi
3R	25401053	3R_25401053_SNP [dm3] 3R_29575331_SNP [dm6]	G	A	2.692e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15505419	2L_15505419_SNP [dm3] 2L_15505419_SNP [dm6]	A	C	2.694e^-4	0.613	DOWNSTREAM lace INTERGENIC
2L	4896962	2L_4896962_SNP [dm3] 2L_4896962_SNP [dm6]	G	A	2.697e^-4	0.613	INTRON CG3036
2L	2845039	2L_2845039_SNP [dm3] 2L_2845039_SNP [dm6]	C	G	2.700e^-4	0.613	SYNONYMOUS_CODING CG18557 UPSTREAM CG18558 DOWNSTREAM CG3117	TF binding site mE1_TFBS_cad
2L	20553193	2L_20553193_SNP [dm3] 2L_20553193_SNP [dm6]	C	A	2.702e^-4	0.613	INTERGENIC
2L	5158876	2L_5158876_SNP [dm3] 2L_5158876_SNP [dm6]	A	G	2.703e^-4	0.613	NON_SYNONYMOUS_CODING Msp300 DOWNSTREAM Msp300 INTRON Msp300
3R	21653812	3R_21653812_SNP [dm3] 3R_25828090_SNP [dm6]	A	G	2.703e^-4	0.613	INTERGENIC
3R	16585923	3R_16585923_SNP [dm3] 3R_20760201_SNP [dm6]	T	C	2.704e^-4	0.613	INTRON Syp & 1 other
3L	14286218	3L_14286218_SNP [dm3] 3L_14293118_SNP [dm6]	A	G	2.705e^-4	0.613	INTRON fz
3L	12332188	3L_12332188_SNP [dm3] 3L_12339088_SNP [dm6]	C	T	2.709e^-4	0.613	DOWNSTREAM CrzR INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23036235	3R_23036235_DEL [dm3] 3R_27210513_DEL [dm6]	GAGGATCCG	G	2.711e^-4	0.613	INTERGENIC
3R	9737634	3R_9737634_SNP [dm3] 3R_13911912_SNP [dm6]	T	G	2.714e^-4	0.613	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19430396	3R_19430396_SNP [dm3] 3R_23604674_SNP [dm6]	A	G	2.718e^-4	0.613	INTRON CG10184	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14548191	2R_14548191_SNP [dm3] 2R_18660686_SNP [dm6]	T	C	2.719e^-4	0.613	UTR_5_PRIME Gint3 & 1 other UPSTREAM Gint3 & 1 other INTRON Gint3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	14286224	3L_14286224_SNP [dm3] 3L_14293124_SNP [dm6]	C	T	2.723e^-4	0.613	INTRON fz
3L	14286228	3L_14286228_SNP [dm3] 3L_14293128_SNP [dm6]	C	T	2.723e^-4	0.613	INTRON fz
3L	10510351	3L_10510351_SNP [dm3] 3L_10517251_SNP [dm6]	A	T	2.724e^-4	0.613	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20465352	2L_20465352_SNP [dm3] 2L_20465352_SNP [dm6]	T	A	2.731e^-4	0.613	EXON CR44980
2L	2390682	2L_2390682_SNP [dm3] 2L_2390682_SNP [dm6]	A	C	2.732e^-4	0.613	UTR_5_PRIME CG43750 UPSTREAM VGlut
3R	15245444	3R_15245444_SNP [dm3] 3R_19419722_SNP [dm6]	A	C	2.734e^-4	0.613	INTRON CG31221
2R	11557229	2R_11557229_SNP [dm3] 2R_15669724_SNP [dm6]	T	A	2.737e^-4	0.613	INTRON fus
2L	9854553	2L_9854553_INS [dm3] 2L_9854553_INS [dm6]	C	CGC	2.739e^-4	0.613	INTRON nAChRalpha6
3R	6195249	3R_6195249_SNP [dm3] 3R_10369527_SNP [dm6]	G	T	2.741e^-4	0.613	INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	13540598	2R_13540598_SNP [dm3] 2R_17653093_SNP [dm6]	A	G	2.744e^-4	0.613	INTRON CCHa1-R
3L	10917892	3L_10917892_SNP [dm3] 3L_10924792_SNP [dm6]	G	C	2.750e^-4	0.613	INTERGENIC
2L	20572827	2L_20572827_SNP [dm3] 2L_20572827_SNP [dm6]	T	C	2.751e^-4	0.613	INTRON CR45347
2R	18117384	2R_18117384_SNP [dm3] 2R_22229879_SNP [dm6]	A	T	2.755e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10460112	3L_10460112_SNP [dm3] 3L_10467012_SNP [dm6]	T	C	2.756e^-4	0.613	SYNONYMOUS_CODING S-Lap3	TF binding site mE1_TFBS_cad
2L	6315183	2L_6315183_DEL [dm3] 2L_6315183_DEL [dm6]	GT	G	2.761e^-4	0.613	INTRON Ddr
2R	9975866	2R_9975866_SNP [dm3] 2R_14088361_SNP [dm6]	A	G	2.764e^-4	0.613	INTRON Prosap
2R	18777351	2R_18777351_SNP [dm3] 2R_22889828_SNP [dm6]	T	C	2.769e^-4	0.613	SYNONYMOUS_CODING MED23 UPSTREAM Gmer	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5851559	3L_5851559_SNP [dm3] 3L_5858459_SNP [dm6]	A	C	2.771e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	15414908	2L_15414908_SNP [dm3] 2L_15414908_SNP [dm6]	C	T	2.776e^-4	0.613	INTERGENIC
3L	10643848	3L_10643848_DEL [dm3] 3L_10650748_DEL [dm6]	GG	A	2.777e^-4	0.613	INTRON CG32066
3R	1802269	3R_1802269_SNP [dm3] 3R_5976547_SNP [dm6]	T	G	2.777e^-4	0.613	INTRON Obp83b
2L	6188357	2L_6188357_SNP [dm3] 2L_6188357_SNP [dm6]	A	G	2.779e^-4	0.613	INTRON CG34380	TF binding site mE1_TFBS_cad
3R	17881201	3R_17881201_SNP [dm3] 3R_22055479_SNP [dm6]	G	A	2.779e^-4	0.613	INTRON how
2L	7797883	2L_7797883_SNP [dm3] 2L_7797883_SNP [dm6]	T	C	2.780e^-4	0.613	INTRON Herp
3R	13788887	3R_13788887_MNP [dm3] 3R_17963165_MNP [dm6]	GGGC	TTAT	2.780e^-4	0.613	INTRON cpo
2L	3404684	2L_3404684_SNP [dm3] 2L_3404684_SNP [dm6]	G	T	2.782e^-4	0.613	UTR_3_PRIME pgant2
2L	22817131	2L_22817131_DEL [dm3] 2L_22924399_DEL [dm6]	AA	A	2.784e^-4	0.613	UPSTREAM lt INTERGENIC
2R	11333162	2R_11333162_SNP [dm3] 2R_15445657_SNP [dm6]	G	T	2.786e^-4	0.613	INTRON CG43729
2R	4355850	2R_4355850_SNP [dm3] 2R_8468345_SNP [dm6]	C	T	2.793e^-4	0.613	DOWNSTREAM Mal-A6 & 1 other INTERGENIC
3L	16509234	3L_16509234_DEL [dm3] 3L_16516134_DEL [dm6]	GGACTTAAAG	G	2.800e^-4	0.613	INTRON CG43373
X	5906679	X_5906679_SNP [dm3] X_6012646_SNP [dm6]	T	G	2.801e^-4	0.613	SYNONYMOUS_CODING mab-21	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20686707	2R_20686707_SNP [dm3] 2R_24799184_SNP [dm6]	G	A	2.807e^-4	0.613	SYNONYMOUS_CODING CG3611 DOWNSTREAM CG12849	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3L	14566147	3L_14566147_SNP [dm3] 3L_14573047_SNP [dm6]	A	G	2.815e^-4	0.613	INTERGENIC
3L	6691654	3L_6691654_DEL [dm3] 3L_6698554_DEL [dm6]	GG	G	2.816e^-4	0.613	INTRON SP1173
2R	6179331	2R_6179331_SNP [dm3] 2R_10291826_SNP [dm6]	A	T	2.821e^-4	0.613	INTRON CAP
X	20260198	X_20260198_SNP [dm3] X_20389171_SNP [dm6]	A	G	2.830e^-4	0.613	DOWNSTREAM jb INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18787138	2R_18787138_SNP [dm3] 2R_22899615_SNP [dm6]	C	A	2.831e^-4	0.613	INTRON nahoda
3L	10404923	3L_10404923_SNP [dm3] 3L_10411823_SNP [dm6]	T	C	2.831e^-4	0.613	UPSTREAM CR44543 & 1 other DOWNSTREAM CR43990 INTERGENIC
3R	16668254	3R_16668254_SNP [dm3] 3R_20842532_SNP [dm6]	T	C	2.832e^-4	0.613	NON_SYNONYMOUS_CODING CG15695
2R	18782030	2R_18782030_SNP [dm3] 2R_22894507_SNP [dm6]	T	G	2.853e^-4	0.613	NON_SYNONYMOUS_CODING CG3700 DOWNSTREAM MED23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6230793	2R_6230793_SNP [dm3] 2R_10343288_SNP [dm6]	C	T	2.855e^-4	0.613	INTRON CG42732
3R	27542394	3R_27542394_SNP [dm3] 3R_31716672_SNP [dm6]	A	C	2.860e^-4	0.613	INTRON ttk	TF binding site mE1_TFBS_inv
3R	4701017	3R_4701017_SNP [dm3] 3R_8875295_SNP [dm6]	C	G	2.862e^-4	0.613	INTRON pyd
2L	5086490	2L_5086490_SNP [dm3] 2L_5086490_SNP [dm6]	C	A	2.865e^-4	0.613	INTRON pgant5
3L	3556645	3L_3556645_SNP [dm3] 3L_3556645_SNP [dm6]	C	T	2.865e^-4	0.613	INTRON Eip63E	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	21284030	2L_21284030_SNP [dm3] 2L_21284030_SNP [dm6]	T	A	2.866e^-4	0.613	EXON Cyp6t2Psi
X	12023874	X_12023874_SNP [dm3] X_12129841_SNP [dm6]	T	C	2.866e^-4	0.613	INTRON Ten-a
2R	4211646	2R_4211646_SNP [dm3] 2R_8324141_SNP [dm6]	C	G	2.870e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	23024788	3L_23024788_SNP [dm3] 3L_23031688_SNP [dm6]	T	C	2.876e^-4	0.613	SYNONYMOUS_CODING nrm INTRON nrm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16674082	3R_16674082_INS [dm3] 3R_20848360_INS [dm6]	T	CGGTA	2.881e^-4	0.613	DOWNSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13795334	3L_13795334_SNP [dm3] 3L_13802234_SNP [dm6]	A	G	2.882e^-4	0.613	INTRON bru-3
2L	20592430	2L_20592430_SNP [dm3] 2L_20592430_SNP [dm6]	G	T	2.887e^-4	0.613	INTRON CR44909
2L	9301495	2L_9301495_SNP [dm3] 2L_9301495_SNP [dm6]	G	A	2.890e^-4	0.613	UTR_3_PRIME Ggamma30A
2L	4165144	2L_4165144_SNP [dm3] 2L_4165144_SNP [dm6]	A	G	2.890e^-4	0.613	INTRON Or24a
2R	10404384	2R_10404384_SNP [dm3] 2R_14516879_SNP [dm6]	T	C	2.894e^-4	0.613	INTERGENIC
2R	18935401	2R_18935401_SNP [dm3] 2R_23047878_SNP [dm6]	G	A	2.897e^-4	0.613	SYNONYMOUS_CODING twi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5302876	3L_5302876_SNP [dm3] 3L_5309776_SNP [dm6]	G	C	2.898e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5488508	2L_5488508_SNP [dm3] 2L_5488508_SNP [dm6]	A	G	2.905e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12159282	3L_12159282_SNP [dm3] 3L_12166182_SNP [dm6]	G	T	2.917e^-4	0.613	SYNONYMOUS_CODING Rh7	TF binding site mE1_TFBS_cad
3L	17166870	3L_17166870_SNP [dm3] 3L_17173770_SNP [dm6]	T	A	2.921e^-4	0.613	INTRON Rbp6
2L	20852110	2L_20852110_SNP [dm3] 2L_20852110_SNP [dm6]	T	C	2.926e^-4	0.613	UPSTREAM twit INTERGENIC
3L	15395739	3L_15395739_SNP [dm3] 3L_15402639_SNP [dm6]	T	A	2.927e^-4	0.613	INTERGENIC
X	21346732	X_21346732_DEL [dm3] X_21475705_DEL [dm6]	CGCCTTGCCCCGCCCCCTTC...	C	2.929e^-4	0.613	INTERGENIC
X	6430090	X_6430090_SNP [dm3] X_6536057_SNP [dm6]	G	T	2.930e^-4	0.613	SYNONYMOUS_CODING dx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12480585	3L_12480585_SNP [dm3] 3L_12487485_SNP [dm6]	A	G	2.930e^-4	0.613	INTRON CG10660	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	24758167	3R_24758167_SNP [dm3] 3R_28932445_SNP [dm6]	T	C	2.930e^-4	0.613	INTRON CG14521
X	20055370	X_20055370_SNP [dm3] X_20161337_SNP [dm6]	A	T	2.934e^-4	0.613	NON_SYNONYMOUS_CODING Phf7	TF binding site mE1_TFBS_chinmo
3L	17259288	3L_17259288_SNP [dm3] 3L_17266188_SNP [dm6]	G	T	2.935e^-4	0.613	INTERGENIC
2L	20881107	2L_20881107_SNP [dm3] 2L_20881107_SNP [dm6]	G	C	2.940e^-4	0.613	INTRON sky & 1 other
2R	5783795	2R_5783795_SNP [dm3] 2R_9896290_SNP [dm6]	C	A	2.940e^-4	0.613	NON_SYNONYMOUS_CODING CG30007
2R	11925943	2R_11925943_SNP [dm3] 2R_16038438_SNP [dm6]	A	G	2.945e^-4	0.613	SYNONYMOUS_CODING SP2353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19358074	X_19358074_SNP [dm3] X_19464041_SNP [dm6]	T	A	2.945e^-4	0.613	INTRON kek5
2R	14143230	2R_14143230_DEL [dm3] 2R_18255725_DEL [dm6]	TGTTAGTTATGAAATT...	A	2.950e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17036073	3R_17036073_SNP [dm3] 3R_21210351_SNP [dm6]	A	T	2.950e^-4	0.613	INTRON SNF4Agamma
3R	14187124	3R_14187124_SNP [dm3] 3R_18361402_SNP [dm6]	A	G	2.953e^-4	0.613	UPSTREAM CG15803 & 1 other DOWNSTREAM CR45634 INTERGENIC
2L	12972639	2L_12972639_SNP [dm3] 2L_12972639_SNP [dm6]	C	T	2.956e^-4	0.613	INTERGENIC
3R	2718736	3R_2718736_SNP [dm3] 3R_6893014_SNP [dm6]	T	C	2.958e^-4	0.613	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2L	1687549	2L_1687549_SNP [dm3] 2L_1687549_SNP [dm6]	T	A	2.959e^-4	0.613	INTRON chinmo
3L	2538279	3L_2538279_SNP [dm3] 3L_2538279_SNP [dm6]	T	A	2.960e^-4	0.613	INTRON Spn
3R	17739070	3R_17739070_SNP [dm3] 3R_21913348_SNP [dm6]	C	T	2.960e^-4	0.613	SYNONYMOUS_CODING CG6690 UPSTREAM CG17843
2R	3887512	2R_3887512_SNP [dm3] 2R_8000007_SNP [dm6]	T	C	2.963e^-4	0.613	DOWNSTREAM CG11191 INTERGENIC
X	2224432	X_2224432_SNP [dm3] X_2330399_SNP [dm6]	C	T	2.966e^-4	0.613	INTRON phl & 1 other
3R	16670041	3R_16670041_SNP [dm3] 3R_20844319_SNP [dm6]	G	T	2.969e^-4	0.613	NON_SYNONYMOUS_CODING CG15695	TF binding site mE1_TFBS_sens
3R	3879404	3R_3879404_SNP [dm3] 3R_8053682_SNP [dm6]	G	T	2.969e^-4	0.613	INTRON CG43060
2L	11213665	2L_11213665_SNP [dm3] 2L_11213665_SNP [dm6]	T	G	2.969e^-4	0.613	INTRON ab
2R	4337765	2R_4337765_SNP [dm3] 2R_8450260_SNP [dm6]	A	T	2.979e^-4	0.613	DOWNSTREAM Cyp4e1 INTRON Mal-A1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22704366	3R_22704366_SNP [dm3] 3R_26878644_SNP [dm6]	G	A	2.982e^-4	0.613	INTRON CG5500 & 1 other
2L	16336065	2L_16336065_SNP [dm3] 2L_16336065_SNP [dm6]	G	T	2.982e^-4	0.613	NON_SYNONYMOUS_CODING CG31817
X	5197936	X_5197936_SNP [dm3] X_5303903_SNP [dm6]	C	T	2.984e^-4	0.613	SYNONYMOUS_CODING CG3323 INTRON CG42749
2R	5302330	2R_5302330_SNP [dm3] 2R_9414825_SNP [dm6]	A	C	2.988e^-4	0.613	UTR_5_PRIME wun2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12438757	2R_12438757_SNP [dm3] 2R_16551252_SNP [dm6]	G	T	2.995e^-4	0.613	INTERGENIC
X	2228829	X_2228829_INS [dm3] X_2334796_INS [dm6]	C	CGGCC	2.996e^-4	0.613	UPSTREAM Ilp6 INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13209563	3L_13209563_SNP [dm3] 3L_13216463_SNP [dm6]	G	A	2.997e^-4	0.613	UPSTREAM CR45097 EXON CR43914	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2377500	3L_2377500_SNP [dm3] 3L_2377500_SNP [dm6]	T	C	2.998e^-4	0.613	UTR_5_PRIME CG15877 UPSTREAM CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3165956	3L_3165956_SNP [dm3] 3L_3165956_SNP [dm6]	A	G	2.998e^-4	0.613	SPLICE_SITE_REGION Asciz UPSTREAM Asciz INTRON CG32280 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17036066	3R_17036066_SNP [dm3] 3R_21210344_SNP [dm6]	A	G	2.999e^-4	0.613	INTRON SNF4Agamma
3L	15597320	3L_15597320_SNP [dm3] 3L_15604220_SNP [dm6]	A	G	2.999e^-4	0.613	INTRON RhoGAP71E
3L	5285877	3L_5285877_SNP [dm3] 3L_5292777_SNP [dm6]	G	A	3.002e^-4	0.613	INTERGENIC
3R	7819756	3R_7819756_SNP [dm3] 3R_11994034_SNP [dm6]	T	G	3.003e^-4	0.613	UPSTREAM mfas DOWNSTREAM Tk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4761589	3R_4761589_SNP [dm3] 3R_8935867_SNP [dm6]	T	G	3.007e^-4	0.613	UPSTREAM CR44020 INTRON osk
3L	12721930	3L_12721930_SNP [dm3] 3L_12728830_SNP [dm6]	T	A	3.008e^-4	0.613	INTERGENIC
X	6430117	X_6430117_SNP [dm3] X_6536084_SNP [dm6]	C	T	3.008e^-4	0.613	SYNONYMOUS_CODING dx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6142651	X_6142651_SNP [dm3] X_6248618_SNP [dm6]	T	C	3.012e^-4	0.613	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_chinmo
2R	6302824	2R_6302824_SNP [dm3] 2R_10415319_SNP [dm6]	G	A	3.014e^-4	0.613	INTRON CG42732
3R	21363419	3R_21363419_SNP [dm3] 3R_25537697_SNP [dm6]	A	G	3.016e^-4	0.613	INTRON msi
3R	14196147	3R_14196147_SNP [dm3] 3R_18370425_SNP [dm6]	A	G	3.017e^-4	0.613	SYNONYMOUS_CODING gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18786360	2R_18786360_SNP [dm3] 2R_22898837_SNP [dm6]	G	A	3.018e^-4	0.613	INTRON nahoda
2L	9943981	2L_9943981_SNP [dm3] 2L_9943981_SNP [dm6]	G	A	3.022e^-4	0.613	DOWNSTREAM CG4619 INTRON CG5853
3R	22106946	3R_22106946_SNP [dm3] 3R_26281224_SNP [dm6]	C	T	3.024e^-4	0.613	INTERGENIC
2L	1429065	2L_1429065_DEL [dm3] 2L_1429065_DEL [dm6]	TTG	T	3.038e^-4	0.613	UTR_3_PRIME CG43401 DOWNSTREAM CG43401	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24020442	3R_24020442_DEL [dm3] 3R_28194720_DEL [dm6]	GGTG	C	3.045e^-4	0.613	INTRON CG34354
3L	18626843	3L_18626843_SNP [dm3] 3L_18633743_SNP [dm6]	A	T	3.049e^-4	0.613	INTRON MYPT-75D
3R	14196707	3R_14196707_SNP [dm3] 3R_18370985_SNP [dm6]	A	G	3.051e^-4	0.613	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	21546452	3L_21546452_SNP [dm3] 3L_21553352_SNP [dm6]	G	A	3.051e^-4	0.613	SYNONYMOUS_CODING Wnk
3R	7656184	3R_7656184_SNP [dm3] 3R_11830462_SNP [dm6]	G	A	3.055e^-4	0.613	INTRON CG6959
2R	18780034	2R_18780034_SNP [dm3] 2R_22892511_SNP [dm6]	T	C	3.057e^-4	0.613	SPLICE_SITE_REGION MED23 INTRON MED23
2L	9405412	2L_9405412_SNP [dm3] 2L_9405412_SNP [dm6]	A	T	3.060e^-4	0.613	INTRON Shawl
X	14615089	X_14615089_SNP [dm3] X_14721056_SNP [dm6]	T	A	3.060e^-4	0.613	INTRON NetB
2R	13649038	2R_13649038_SNP [dm3] 2R_17761533_SNP [dm6]	A	C	3.061e^-4	0.613	INTRON CG5009	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	17063097	3R_17063097_SNP [dm3] 3R_21237375_SNP [dm6]	G	T	3.062e^-4	0.613	UPSTREAM e INTERGENIC	regulatory region REDfly_CRMs
3L	11029521	3L_11029521_SNP [dm3] 3L_11036421_SNP [dm6]	A	G	3.063e^-4	0.613	UTR_3_PRIME CG43693 DOWNSTREAM CR44547
2L	6354533	2L_6354533_SNP [dm3] 2L_6354533_SNP [dm6]	C	G	3.064e^-4	0.613	UPSTREAM ppk14 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	16007265	2L_16007265_DEL [dm3] 2L_16007265_DEL [dm6]	TAAC	T	3.069e^-4	0.613	UPSTREAM CG31820 DOWNSTREAM CR44844 INTRON beat-Ic	TF binding site mE1_TFBS_inv
2L	6034511	2L_6034511_SNP [dm3] 2L_6034511_SNP [dm6]	G	A	3.071e^-4	0.613	UPSTREAM CG9109 DOWNSTREAM mtm INTERGENIC	TF binding site mE1_TFBS_cad
2R	15491269	2R_15491269_SNP [dm3] 2R_19603764_SNP [dm6]	A	C	3.072e^-4	0.613	DOWNSTREAM CR44474 INTRON sm EXON CR44473
2R	6189734	2R_6189734_SNP [dm3] 2R_10302229_SNP [dm6]	T	C	3.079e^-4	0.613	UPSTREAM CAP INTRON CAP	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2L	20903607	2L_20903607_INS [dm3] 2L_20903607_INS [dm6]	G	GTTTTGAAATGCCCCA...	3.089e^-4	0.613	INTRON sky & 1 other
3L	17762578	3L_17762578_SNP [dm3] 3L_17769478_SNP [dm6]	G	A	3.091e^-4	0.613	INTERGENIC
2R	12634506	2R_12634506_SNP [dm3] 2R_16747001_SNP [dm6]	G	T	3.098e^-4	0.613	UPSTREAM CG15617 DOWNSTREAM Acp53C14a INTERGENIC
2R	13805939	2R_13805939_SNP [dm3] 2R_17918434_SNP [dm6]	A	T	3.101e^-4	0.613	INTRON Elk
X	20260197	X_20260197_SNP [dm3] X_20389170_SNP [dm6]	A	C	3.103e^-4	0.613	DOWNSTREAM jb INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10402108	3L_10402108_SNP [dm3] 3L_10409008_SNP [dm6]	T	C	3.109e^-4	0.613	INTERGENIC
2L	20464555	2L_20464555_SNP [dm3] 2L_20464555_SNP [dm6]	G	A	3.110e^-4	0.613	EXON CR44980	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	5032001	X_5032001_SNP [dm3] X_5137968_SNP [dm6]	C	T	3.112e^-4	0.613	INTRON rg & 1 other
2L	16412297	2L_16412297_INS [dm3] 2L_16412297_INS [dm6]	C	CC	3.117e^-4	0.613	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9912515	3R_9912515_INS [dm3] 3R_14086793_INS [dm6]	A	AG	3.119e^-4	0.613	INTRON foxo
3R	14449654	3R_14449654_SNP [dm3] 3R_18623932_SNP [dm6]	A	C	3.119e^-4	0.613	INTRON qin
3L	18152735	3L_18152735_SNP [dm3] 3L_18159635_SNP [dm6]	A	G	3.123e^-4	0.613	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16789824	2L_16789824_SNP [dm3] 2L_16789824_SNP [dm6]	A	G	3.126e^-4	0.613	SYNONYMOUS_CODING Cyt-b5-r	TF binding site mE1_TFBS_cad
3L	3570519	3L_3570519_SNP [dm3] 3L_3570519_SNP [dm6]	A	G	3.126e^-4	0.613	INTRON Eip63E	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	13019562	3R_13019562_SNP [dm3] 3R_17193840_SNP [dm6]	C	T	3.130e^-4	0.613	INTRON Mur89F
3L	17742104	3L_17742104_SNP [dm3] 3L_17749004_SNP [dm6]	C	T	3.132e^-4	0.613	SYNONYMOUS_CODING Adgf-B DOWNSTREAM Ccn	TF binding site mE1_TFBS_cad
3R	13140042	3R_13140042_SNP [dm3] 3R_17314320_SNP [dm6]	T	C	3.139e^-4	0.613	INTERGENIC
2L	5234752	2L_5234752_SNP [dm3] 2L_5234752_SNP [dm6]	G	A	3.140e^-4	0.613	INTRON tkv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23856985	3R_23856985_SNP [dm3] 3R_28031263_SNP [dm6]	G	A	3.141e^-4	0.613	SYNONYMOUS_CODING CG34362
2R	16370783	2R_16370783_SNP [dm3] 2R_20483278_SNP [dm6]	G	A	3.143e^-4	0.613	INTERGENIC
3R	24758165	3R_24758165_SNP [dm3] 3R_28932443_SNP [dm6]	G	A	3.144e^-4	0.613	INTRON CG14521
2L	1715368	2L_1715368_SNP [dm3] 2L_1715368_SNP [dm6]	A	G	3.146e^-4	0.613	SYNONYMOUS_CODING frtz DOWNSTREAM Rim2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11004522	3R_11004522_INS [dm3] 3R_15178800_INS [dm6]	T	TTT	3.152e^-4	0.613	INTRON Gyc88E & 1 other
2R	12478534	2R_12478534_SNP [dm3] 2R_16591029_SNP [dm6]	G	A	3.154e^-4	0.613	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
3L	7254180	3L_7254180_SNP [dm3] 3L_7261080_SNP [dm6]	C	T	3.154e^-4	0.613	INTRON CG14830
2R	18780203	2R_18780203_SNP [dm3] 2R_22892680_SNP [dm6]	C	T	3.158e^-4	0.613	INTRON MED23	TF binding site mE1_TFBS_cad
2R	11148975	2R_11148975_SNP [dm3] 2R_15261470_SNP [dm6]	A	C	3.161e^-4	0.613	NON_SYNONYMOUS_CODING ItgalphaPS4	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	4084445	3L_4084445_SNP [dm3] 3L_4084445_SNP [dm6]	G	T	3.164e^-4	0.613	INTRON Gad1
3R	3625942	3R_3625942_SNP [dm3] 3R_7800220_SNP [dm6]	A	T	3.167e^-4	0.613	INTRON CG3014
2L	20557425	2L_20557425_SNP [dm3] 2L_20557425_SNP [dm6]	T	C	3.176e^-4	0.613	INTERGENIC
3L	17166836	3L_17166836_SNP [dm3] 3L_17173736_SNP [dm6]	A	T	3.185e^-4	0.613	INTRON Rbp6
3L	13037146	3L_13037146_INS [dm3] 3L_13044046_INS [dm6]	A	AAAATAGGTATGA...	3.189e^-4	0.613	UTR_3_PRIME RpS4 UPSTREAM Syx13 DOWNSTREAM snoRNA:Psi28S-3327b & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8741418	3L_8741418_SNP [dm3] 3L_8748318_SNP [dm6]	G	A	3.191e^-4	0.613	DOWNSTREAM CG13306 INTERGENIC
2L	2622082	2L_2622082_SNP [dm3] 2L_2622082_SNP [dm6]	C	G	3.195e^-4	0.613	INTERGENIC
3R	12337562	3R_12337562_SNP [dm3] 3R_16511840_SNP [dm6]	T	A	3.197e^-4	0.613	INTRON CG42342
2L	20903611	2L_20903611_INS [dm3] 2L_20903611_INS [dm6]	A	AGAGAGCTTAGAATCCTTCA...	3.203e^-4	0.613	INTRON sky & 1 other
3L	14286209	3L_14286209_SNP [dm3] 3L_14293109_SNP [dm6]	A	G	3.207e^-4	0.613	INTRON fz
3R	9774974	3R_9774974_SNP [dm3] 3R_13949252_SNP [dm6]	T	A	3.208e^-4	0.613	UTR_3_PRIME CG31517 DOWNSTREAM CG9926	TF binding site BDTNP1_TFBS_twi
2L	20529337	2L_20529337_SNP [dm3] 2L_20529337_SNP [dm6]	A	C	3.215e^-4	0.613	INTERGENIC
2L	20903648	2L_20903648_SNP [dm3] 2L_20903648_SNP [dm6]	A	G	3.221e^-4	0.613	INTRON sky & 1 other
3R	7467420	3R_7467420_SNP [dm3] 3R_11641698_SNP [dm6]	A	G	3.222e^-4	0.613	INTRON Csk
3R	8913430	3R_8913430_SNP [dm3] 3R_13087708_SNP [dm6]	G	C	3.233e^-4	0.613	UPSTREAM timeout DOWNSTREAM CG43063 INTERGENIC
3L	6015479	3L_6015479_SNP [dm3] 3L_6022379_SNP [dm6]	C	A	3.239e^-4	0.613	INTRON PVRAP
2L	18573314	2L_18573314_SNP [dm3] 2L_18573314_SNP [dm6]	A	T	3.240e^-4	0.613	INTRON Pde11
2L	10729905	2L_10729905_SNP [dm3] 2L_10729905_SNP [dm6]	A	G	3.243e^-4	0.613	SYNONYMOUS_CODING CG6443 UPSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15505570	3L_15505570_SNP [dm3] 3L_15512470_SNP [dm6]	C	T	3.244e^-4	0.613	SPLICE_SITE_REGION Eip71CD UTR_3_PRIME Eip71CD INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20156695	X_20156695_SNP [dm3] X_20285668_SNP [dm6]	A	T	3.249e^-4	0.613	INTERGENIC
2R	3930530	2R_3930530_SNP [dm3] 2R_8043025_SNP [dm6]	C	G	3.252e^-4	0.613	DOWNSTREAM Optix INTERGENIC	TF binding site mE1_TFBS_cnc
2R	17792951	2R_17792951_SNP [dm3] 2R_21905446_SNP [dm6]	G	A	3.252e^-4	0.613	INTRON Fili
2R	14555978	2R_14555978_INS [dm3] 2R_18668473_INS [dm6]	G	GCG	3.253e^-4	0.613	INTRON edl	TF binding site mE1_TFBS_sens
2R	18110371	2R_18110371_SNP [dm3] 2R_22222866_SNP [dm6]	C	T	3.259e^-4	0.613	NON_SYNONYMOUS_CODING Oatp58Db DOWNSTREAM Oatp58Dc	TF binding site mE1_TFBS_sens
2R	3520999	2R_3520999_SNP [dm3] 2R_7633494_SNP [dm6]	C	T	3.260e^-4	0.613	UTR_3_PRIME CG43341 INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_chinmo
3L	3120242	3L_3120242_SNP [dm3] 3L_3120242_SNP [dm6]	G	A	3.263e^-4	0.613	INTRON prominin-like
2R	6770893	2R_6770893_SNP [dm3] 2R_10883388_SNP [dm6]	G	A	3.270e^-4	0.613	UPSTREAM CG18003 DOWNSTREAM Pex6 INTERGENIC
2R	3429002	2R_3429002_DEL [dm3] 2R_7541497_DEL [dm6]	GCG	G	3.271e^-4	0.613	INTRON Corin	TF binding site mE1_TFBS_HSA
2R	15975704	2R_15975704_SNP [dm3] 2R_20088199_SNP [dm6]	G	A	3.272e^-4	0.613	INTERGENIC
X	2457317	X_2457317_SNP [dm3] X_2563284_SNP [dm6]	A	G	3.272e^-4	0.613	INTRON Pdfr
2R	14143215	2R_14143215_SNP [dm3] 2R_18255710_SNP [dm6]	A	T	3.272e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5006104	X_5006104_SNP [dm3] X_5112071_SNP [dm6]	T	C	3.279e^-4	0.613	INTRON rg & 1 other
2L	15431266	2L_15431266_SNP [dm3] 2L_15431266_SNP [dm6]	A	T	3.279e^-4	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10159609	3L_10159609_SNP [dm3] 3L_10166509_SNP [dm6]	G	T	3.280e^-4	0.613	NON_SYNONYMOUS_CODING CG6628 INTRON dpr10
2L	16759552	2L_16759552_INS [dm3] 2L_16759552_INS [dm6]	T	TATTT	3.281e^-4	0.613	SPLICE_SITE_REGION ppk17 INTRON ppk17
2R	17143287	2R_17143287_SNP [dm3] 2R_21255782_SNP [dm6]	T	C	3.282e^-4	0.613	UTR_5_PRIME Rgk3 UPSTREAM Rgk3
2R	15138588	2R_15138588_SNP [dm3] 2R_19251083_SNP [dm6]	T	C	3.283e^-4	0.613	NON_SYNONYMOUS_CODING CG33454 DOWNSTREAM wbl
3L	6652551	3L_6652551_SNP [dm3] 3L_6659451_SNP [dm6]	T	G	3.285e^-4	0.613	INTERGENIC
3L	17834375	3L_17834375_SNP [dm3] 3L_17841275_SNP [dm6]	C	T	3.285e^-4	0.613	UPSTREAM CR45175 DOWNSTREAM CG5567 INTRON CG5577

Missing results

By genomic position
Variant impact
Gene name

Variance phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results