DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.108e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.04816

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	8.108	0.0174

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2154 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10497741	2L_10497741_SNP [dm3] 2L_10497741_SNP [dm6]	T	A	2.989e^-7	0.384	INTRON Myo31DF
3R	17404507	3R_17404507_SNP [dm3] 3R_21578785_SNP [dm6]	C	G	4.094e^-7	0.384	INTRON InR	TF binding site mE1_TFBS_sens
2L	4207638	2L_4207638_SNP [dm3] 2L_4207638_SNP [dm6]	T	C	6.550e^-7	0.385	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17404450	3R_17404450_SNP [dm3] 3R_21578728_SNP [dm6]	T	C	8.215e^-7	0.385	SPLICE_SITE_REGION InR SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_sens
3L	10159369	3L_10159369_SNP [dm3] 3L_10166269_SNP [dm6]	C	T	1.390e^-6	0.463	SYNONYMOUS_CODING CG6628 INTRON dpr10
2L	4998127	2L_4998127_SNP [dm3] 2L_4998127_SNP [dm6]	G	C	2.096e^-6	0.463	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	13893798	3R_13893798_INS [dm3] 3R_18068076_INS [dm6]	A	AA	2.109e^-6	0.463	INTERGENIC
3L	10159375	3L_10159375_SNP [dm3] 3L_10166275_SNP [dm6]	G	A	2.299e^-6	0.463	SYNONYMOUS_CODING CG6628 INTRON dpr10
3L	16660767	3L_16660767_SNP [dm3] 3L_16667667_SNP [dm6]	T	C	2.485e^-6	0.463	UTR_5_PRIME Galphaf	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	7869451	2L_7869451_SNP [dm3] 2L_7869451_SNP [dm6]	C	T	2.888e^-6	0.463	INTRON Proc
3R	17406267	3R_17406267_INS [dm3] 3R_21580545_INS [dm6]	T	TTCT	3.420e^-6	0.463	UTR_5_PRIME InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3R	17404580	3R_17404580_SNP [dm3] 3R_21578858_SNP [dm6]	A	G	4.320e^-6	0.463	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_sens
3R	9497020	3R_9497020_SNP [dm3] 3R_13671298_SNP [dm6]	G	T	4.437e^-6	0.463	SPLICE_SITE_REGION Task6 INTRON Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18799941	2R_18799941_SNP [dm3] 2R_22912418_SNP [dm6]	C	G	4.740e^-6	0.463	NON_SYNONYMOUS_CODING nahoda SPLICE_SITE_REGION nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	18787514	2R_18787514_SNP [dm3] 2R_22899991_SNP [dm6]	C	T	4.884e^-6	0.463	INTRON nahoda
2R	20166819	2R_20166819_SNP [dm3] 2R_24279296_SNP [dm6]	T	C	4.969e^-6	0.463	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	17384407	3R_17384407_SNP [dm3] 3R_21558685_SNP [dm6]	C	A	5.625e^-6	0.463	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	6352463	3R_6352463_SNP [dm3] 3R_10526741_SNP [dm6]	T	A	5.646e^-6	0.463	INTRON hth
3L	21558474	3L_21558474_SNP [dm3] 3L_21565374_SNP [dm6]	A	G	5.721e^-6	0.463	UPSTREAM CG7634 INTERGENIC
2R	19150426	2R_19150426_SNP [dm3] 2R_23262903_SNP [dm6]	T	C	5.951e^-6	0.463	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3561531	2L_3561531_SNP [dm3] 2L_3561531_SNP [dm6]	T	A	6.258e^-6	0.463	UPSTREAM CR44309 INTERGENIC	TF binding site mE1_TFBS_HSA
X	7489757	X_7489757_SNP [dm3] X_7595724_SNP [dm6]	C	T	6.429e^-6	0.463	INTERGENIC	regulatory region REDfly_CRMs
2R	14133827	2R_14133827_INS [dm3] 2R_18246322_INS [dm6]	A	AA	6.598e^-6	0.463	EXON CR44420	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	18800503	2R_18800503_SNP [dm3] 2R_22912980_SNP [dm6]	A	G	6.636e^-6	0.463	INTRON nahoda	TF binding site mE1_TFBS_HSA
X	19250301	X_19250301_SNP [dm3] X_19356268_SNP [dm6]	C	A	6.683e^-6	0.463	INTRON kek5
3L	5860166	3L_5860166_SNP [dm3] 3L_5867066_SNP [dm6]	G	C	6.824e^-6	0.463	INTERGENIC
3R	17404429	3R_17404429_SNP [dm3] 3R_21578707_SNP [dm6]	A	G	6.956e^-6	0.463	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_sens
2R	6246394	2R_6246394_SNP [dm3] 2R_10358889_SNP [dm6]	G	C	7.720e^-6	0.463	INTRON CG42732
2L	4780253	2L_4780253_DEL [dm3] 2L_4780253_DEL [dm6]	TA	T	7.802e^-6	0.463	INTRON CG15630
2R	16868203	2R_16868203_SNP [dm3] 2R_20980698_SNP [dm6]	A	C	8.257e^-6	0.463	INTRON CG9313
2R	14133830	2R_14133830_SNP [dm3] 2R_18246325_SNP [dm6]	C	T	8.603e^-6	0.463	EXON CR44420	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	8983447	2R_8983447_SNP [dm3] 2R_13095942_SNP [dm6]	C	T	8.801e^-6	0.463	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7574530	2L_7574530_DEL [dm3] 2L_7574530_DEL [dm6]	TG	T	9.060e^-6	0.463	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
2R	18786360	2R_18786360_SNP [dm3] 2R_22898837_SNP [dm6]	G	A	9.203e^-6	0.463	INTRON nahoda
3R	17410863	3R_17410863_SNP [dm3] 3R_21585141_SNP [dm6]	T	C	9.258e^-6	0.463	INTRON InR
2L	4035769	2L_4035769_SNP [dm3] 2L_4035769_SNP [dm6]	C	T	9.295e^-6	0.463	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	13893801	3R_13893801_SNP [dm3] 3R_18068079_SNP [dm6]	A	G	9.733e^-6	0.463	INTERGENIC
2R	18017568	2R_18017568_SNP [dm3] 2R_22130063_SNP [dm6]	A	G	9.841e^-6	0.463	NON_SYNONYMOUS_CODING NtR DOWNSTREAM CG34205	TF binding site BDTNP1_TFBS_twi
3L	9614760	3L_9614760_SNP [dm3] 3L_9621660_SNP [dm6]	C	T	9.955e^-6	0.463	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9975423	3L_9975423_SNP [dm3] 3L_9982323_SNP [dm6]	A	T	1.007e^-5	0.463	INTRON dpr6
3R	4224974	3R_4224974_SNP [dm3] 3R_8399252_SNP [dm6]	G	T	1.026e^-5	0.463	INTRON CG45263
3L	20565475	3L_20565475_SNP [dm3] 3L_20572375_SNP [dm6]	A	T	1.069e^-5	0.463	INTERGENIC
3L	1440946	3L_1440946_SNP [dm3] 3L_1440946_SNP [dm6]	C	A	1.086e^-5	0.463	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3R	22328693	3R_22328693_SNP [dm3] 3R_26502971_SNP [dm6]	A	G	1.087e^-5	0.463	INTRON plum	TF binding site BDTNP1_TFBS_dl
3L	9975407	3L_9975407_SNP [dm3] 3L_9982307_SNP [dm6]	A	T	1.134e^-5	0.472	INTRON dpr6
2L	16412293	2L_16412293_SNP [dm3] 2L_16412293_SNP [dm6]	T	C	1.159e^-5	0.472	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	9975413	3L_9975413_SNP [dm3] 3L_9982313_SNP [dm6]	C	T	1.210e^-5	0.483	INTRON dpr6
2L	16412374	2L_16412374_SNP [dm3] 2L_16412374_SNP [dm6]	T	A	1.244e^-5	0.486	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	9412556	X_9412556_SNP [dm3] X_9518523_SNP [dm6]	A	T	1.280e^-5	0.49	INTRON CG32700	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20565303	3L_20565303_SNP [dm3] 3L_20572203_SNP [dm6]	A	G	1.370e^-5	0.5	INTERGENIC
X	7489758	X_7489758_SNP [dm3] X_7595725_SNP [dm6]	A	G	1.388e^-5	0.5	INTERGENIC	regulatory region REDfly_CRMs
3R	17406239	3R_17406239_SNP [dm3] 3R_21580517_SNP [dm6]	C	T	1.411e^-5	0.5	UTR_5_PRIME InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
2R	19150480	2R_19150480_INS [dm3] 2R_23262957_INS [dm6]	T	TGTATGATATGACTTGATAT...	1.423e^-5	0.5	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9615168	3L_9615168_SNP [dm3] 3L_9622068_SNP [dm6]	G	C	1.439e^-5	0.5	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad
3L	20565474	3L_20565474_SNP [dm3] 3L_20572374_SNP [dm6]	A	T	1.492e^-5	0.501	INTERGENIC
3L	12162331	3L_12162331_SNP [dm3] 3L_12169231_SNP [dm6]	G	A	1.495e^-5	0.501	INTRON Rh7
2R	18787138	2R_18787138_SNP [dm3] 2R_22899615_SNP [dm6]	C	A	1.546e^-5	0.508	INTRON nahoda
3R	15246849	3R_15246849_SNP [dm3] 3R_19421127_SNP [dm6]	T	G	1.570e^-5	0.508	INTRON CG31221
2R	14514286	2R_14514286_SNP [dm3] 2R_18626781_SNP [dm6]	G	C	1.597e^-5	0.508	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_sens
2L	12247709	2L_12247709_SNP [dm3] 2L_12247709_SNP [dm6]	G	A	1.660e^-5	0.519	INTRON aret
3L	14589912	3L_14589912_SNP [dm3] 3L_14596812_SNP [dm6]	A	C	1.760e^-5	0.541	INTRON HGTX
2R	17642560	2R_17642560_SNP [dm3] 2R_21755055_SNP [dm6]	A	G	1.847e^-5	0.559	INTERGENIC
X	9882411	X_9882411_SNP [dm3] X_9988378_SNP [dm6]	G	A	1.918e^-5	0.571	INTERGENIC
3L	9735159	3L_9735159_SNP [dm3] 3L_9742059_SNP [dm6]	T	A	1.948e^-5	0.571	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4780274	2L_4780274_SNP [dm3] 2L_4780274_SNP [dm6]	A	T	2.009e^-5	0.58	INTRON CG15630
2L	1652315	2L_1652315_SNP [dm3] 2L_1652315_SNP [dm6]	A	C	2.061e^-5	0.586	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2249279	X_2249279_SNP [dm3] X_2355246_SNP [dm6]	G	T	2.175e^-5	0.609	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
2L	14094913	2L_14094913_SNP [dm3] 2L_14094913_SNP [dm6]	A	T	2.211e^-5	0.61	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	16442765	3R_16442765_SNP [dm3] 3R_20617043_SNP [dm6]	G	A	2.308e^-5	0.625	UPSTREAM CG5466 & 1 other INTERGENIC
X	7490704	X_7490704_SNP [dm3] X_7596671_SNP [dm6]	T	A	2.333e^-5	0.625	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	16412297	2L_16412297_INS [dm3] 2L_16412297_INS [dm6]	C	CC	2.464e^-5	0.627	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3237774	2L_3237774_SNP [dm3] 2L_3237774_SNP [dm6]	A	G	2.467e^-5	0.627	INTERGENIC
X	11237885	X_11237885_SNP [dm3] X_11343852_SNP [dm6]	G	A	2.473e^-5	0.627	SYNONYMOUS_CODING CG34348 DOWNSTREAM CG1597	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9960959	3L_9960959_SNP [dm3] 3L_9967859_SNP [dm6]	T	C	2.475e^-5	0.627	NON_SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	7489608	X_7489608_DEL [dm3] X_7595575_DEL [dm6]	CTCGGCTACCTTTTCAC...	C	2.563e^-5	0.637	INTERGENIC	regulatory region REDfly_CRMs
X	7745874	X_7745874_SNP [dm3] X_7851841_SNP [dm6]	G	A	2.596e^-5	0.637	DOWNSTREAM CG10920 INTERGENIC
X	17834681	X_17834681_INS [dm3] X_17940648_INS [dm6]	T	TTGT	2.645e^-5	0.637	INTRON Sh	TF binding site BDTNP1_TFBS_dl
X	20891019	X_20891019_SNP [dm3] X_21019992_SNP [dm6]	C	T	2.648e^-5	0.637	INTERGENIC
X	9829149	X_9829149_SNP [dm3] X_9935116_SNP [dm6]	G	A	2.685e^-5	0.638	INTERGENIC
2L	5715442	2L_5715442_SNP [dm3] 2L_5715442_SNP [dm6]	G	T	2.833e^-5	0.66	UTR_3_PRIME CG14007 UPSTREAM CR44818
2L	9995390	2L_9995390_SNP [dm3] 2L_9995390_SNP [dm6]	A	C	2.851e^-5	0.66	UTR_3_PRIME bib DOWNSTREAM CG31875	TF binding site BDTNP1_TFBS_dl
2R	20217082	2R_20217082_SNP [dm3] 2R_24329559_SNP [dm6]	T	A	2.915e^-5	0.665	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
X	2585010	X_2585010_SNP [dm3] X_2690977_SNP [dm6]	C	A	3.003e^-5	0.665	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
3R	22791079	3R_22791079_SNP [dm3] 3R_26965357_SNP [dm6]	T	C	3.021e^-5	0.665	SYNONYMOUS_CODING Gr97a UPSTREAM Tsp97E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9829148	X_9829148_SNP [dm3] X_9935115_SNP [dm6]	G	A	3.024e^-5	0.665	INTERGENIC
3R	10604825	3R_10604825_SNP [dm3] 3R_14779103_SNP [dm6]	T	A	3.094e^-5	0.665	INTRON jvl
X	9829172	X_9829172_DEL [dm3] X_9935139_DEL [dm6]	AA	A	3.126e^-5	0.665	INTERGENIC
X	7489241	X_7489241_SNP [dm3] X_7595208_SNP [dm6]	G	T	3.127e^-5	0.665	INTERGENIC	regulatory region REDfly_CRMs
3R	17410898	3R_17410898_SNP [dm3] 3R_21585176_SNP [dm6]	A	G	3.278e^-5	0.665	INTRON InR
3R	17409538	3R_17409538_SNP [dm3] 3R_21583816_SNP [dm6]	C	T	3.328e^-5	0.665	INTRON InR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15969017	3R_15969017_SNP [dm3] 3R_20143295_SNP [dm6]	T	G	3.334e^-5	0.665	INTERGENIC
2R	20336548	2R_20336548_SNP [dm3] 2R_24449025_SNP [dm6]	A	C	3.368e^-5	0.665	INTERGENIC
2L	13034019	2L_13034019_SNP [dm3] 2L_13034019_SNP [dm6]	T	A	3.456e^-5	0.665	INTRON CG9932
3L	16665669	3L_16665669_SNP [dm3] 3L_16672569_SNP [dm6]	T	A	3.486e^-5	0.665	INTRON zetaCOP
X	9829126	X_9829126_SNP [dm3] X_9935093_SNP [dm6]	T	C	3.539e^-5	0.665	INTERGENIC
3L	10045669	3L_10045669_SNP [dm3] 3L_10052569_SNP [dm6]	G	A	3.550e^-5	0.665	INTRON dpr6
3R	17408208	3R_17408208_SNP [dm3] 3R_21582486_SNP [dm6]	C	A	3.564e^-5	0.665	INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18786124	2R_18786124_SNP [dm3] 2R_22898601_SNP [dm6]	C	T	3.591e^-5	0.665	INTRON nahoda
2R	20161452	2R_20161452_SNP [dm3] 2R_24273929_SNP [dm6]	C	T	3.622e^-5	0.665	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	16732163	2R_16732163_SNP [dm3] 2R_20844658_SNP [dm6]	G	A	3.639e^-5	0.665	INTERGENIC
2L	8793021	2L_8793021_DEL [dm3] 2L_8793021_DEL [dm6]	GG	T	3.643e^-5	0.665	INTERGENIC
2L	10497731	2L_10497731_SNP [dm3] 2L_10497731_SNP [dm6]	G	A	3.669e^-5	0.665	INTRON Myo31DF
2L	4041032	2L_4041032_SNP [dm3] 2L_4041032_SNP [dm6]	T	C	3.676e^-5	0.665	INTRON ed
2L	7869584	2L_7869584_SNP [dm3] 2L_7869584_SNP [dm6]	T	C	3.723e^-5	0.665	INTRON Proc
2L	3237772	2L_3237772_SNP [dm3] 2L_3237772_SNP [dm6]	C	T	3.725e^-5	0.665	INTERGENIC
2L	3239163	2L_3239163_SNP [dm3] 2L_3239163_SNP [dm6]	C	T	3.830e^-5	0.678	INTERGENIC
3L	18408230	3L_18408230_SNP [dm3] 3L_18415130_SNP [dm6]	C	A	3.922e^-5	0.688	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7839272	2L_7839272_SNP [dm3] 2L_7839272_SNP [dm6]	T	C	4.002e^-5	0.688	DOWNSTREAM CR43100 INTERGENIC
2R	19537859	2R_19537859_SNP [dm3] 2R_23650336_SNP [dm6]	A	G	4.005e^-5	0.688	INTRON retn	TF binding site BDTNP1_TFBS_twi
2R	14502559	2R_14502559_SNP [dm3] 2R_18615054_SNP [dm6]	G	T	4.134e^-5	0.688	UPSTREAM CG5323 & 2 others DOWNSTREAM CG10927 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	17408954	3R_17408954_SNP [dm3] 3R_21583232_SNP [dm6]	A	G	4.136e^-5	0.688	INTRON InR	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	18173745	3R_18173745_SNP [dm3] 3R_22348023_SNP [dm6]	C	T	4.145e^-5	0.688	INTERGENIC
2L	4951459	2L_4951459_SNP [dm3] 2L_4951459_SNP [dm6]	A	C	4.162e^-5	0.688	UPSTREAM Jon25Biii DOWNSTREAM Jon25Bii INTERGENIC
X	7489685	X_7489685_SNP [dm3] X_7595652_SNP [dm6]	T	C	4.199e^-5	0.688	INTERGENIC	regulatory region REDfly_CRMs
3L	18150884	3L_18150884_SNP [dm3] 3L_18157784_SNP [dm6]	C	T	4.218e^-5	0.688	INTRON CG13699
3L	9975416	3L_9975416_SNP [dm3] 3L_9982316_SNP [dm6]	T	C	4.298e^-5	0.695	INTRON dpr6
3L	9960972	3L_9960972_SNP [dm3] 3L_9967872_SNP [dm6]	T	C	4.385e^-5	0.703	SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	6361716	3R_6361716_SNP [dm3] 3R_10535994_SNP [dm6]	C	T	4.702e^-5	0.735	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19150419	2R_19150419_SNP [dm3] 2R_23262896_SNP [dm6]	G	T	4.704e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10924509	2L_10924509_SNP [dm3] 2L_10924509_SNP [dm6]	G	T	4.723e^-5	0.735	INTRON dpr2
2R	20094753	2R_20094753_SNP [dm3] 2R_24207230_SNP [dm6]	T	A	4.832e^-5	0.735	UPSTREAM CG11406 INTRON CG11406
3R	17410844	3R_17410844_SNP [dm3] 3R_21585122_SNP [dm6]	T	C	4.908e^-5	0.735	INTRON InR
2L	11818287	2L_11818287_SNP [dm3] 2L_11818287_SNP [dm6]	G	T	4.913e^-5	0.735	SYNONYMOUS_CODING Pde1c	TF binding site mE1_TFBS_cad
X	8696782	X_8696782_SNP [dm3] X_8802749_SNP [dm6]	C	T	4.951e^-5	0.735	INTRON Lim1
3R	17410802	3R_17410802_INS [dm3] 3R_21585080_INS [dm6]	A	AGCATAGTACAGTAA...	4.969e^-5	0.735	INTRON InR
2R	1000542	2R_1000542_SNP [dm3] 2R_5113037_SNP [dm6]	G	A	5.002e^-5	0.735	INTERGENIC	transposable element FlyBase
3L	10046345	3L_10046345_SNP [dm3] 3L_10053245_SNP [dm6]	A	G	5.097e^-5	0.735	INTRON dpr6
2L	14003529	2L_14003529_SNP [dm3] 2L_14003529_SNP [dm6]	A	G	5.098e^-5	0.735	INTERGENIC
3L	5861567	3L_5861567_SNP [dm3] 3L_5868467_SNP [dm6]	T	A	5.111e^-5	0.735	INTERGENIC
2R	19537900	2R_19537900_SNP [dm3] 2R_23650377_SNP [dm6]	A	G	5.159e^-5	0.735	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22811808	3R_22811808_SNP [dm3] 3R_26986086_SNP [dm6]	G	A	5.229e^-5	0.735	SYNONYMOUS_CODING CG31075 DOWNSTREAM CG14253	TF binding site mE1_TFBS_cad
3L	10046771	3L_10046771_SNP [dm3] 3L_10053671_SNP [dm6]	C	T	5.283e^-5	0.735	INTRON dpr6
3R	17408170	3R_17408170_DEL [dm3] 3R_21582448_DEL [dm6]	ACTAA	A	5.343e^-5	0.735	INTRON InR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	17410849	3R_17410849_SNP [dm3] 3R_21585127_SNP [dm6]	G	C	5.361e^-5	0.735	INTRON InR
3R	17404279	3R_17404279_SNP [dm3] 3R_21578557_SNP [dm6]	T	C	5.365e^-5	0.735	SPLICE_SITE_REGION InR INTRON InR
3L	5860181	3L_5860181_SNP [dm3] 3L_5867081_SNP [dm6]	C	A	5.374e^-5	0.735	INTERGENIC
3L	5637378	3L_5637378_SNP [dm3] 3L_5644278_SNP [dm6]	G	C	5.391e^-5	0.735	NON_SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14676704	3L_14676704_DEL [dm3] 3L_14683604_DEL [dm6]	GAT	G	5.436e^-5	0.735	INTRON ome
3R	17411402	3R_17411402_SNP [dm3] 3R_21585680_SNP [dm6]	A	G	5.515e^-5	0.735	INTRON InR
2L	3224652	2L_3224652_SNP [dm3] 2L_3224652_SNP [dm6]	G	T	5.527e^-5	0.735	INTERGENIC
2R	14270389	2R_14270389_SNP [dm3] 2R_18382884_SNP [dm6]	C	T	5.578e^-5	0.735	NON_SYNONYMOUS_CODING IM23
3R	17963295	3R_17963295_SNP [dm3] 3R_22137573_SNP [dm6]	C	G	5.579e^-5	0.735	INTRON SKIP
2L	4041056	2L_4041056_SNP [dm3] 2L_4041056_SNP [dm6]	T	A	5.606e^-5	0.735	INTRON ed
3L	21558411	3L_21558411_SNP [dm3] 3L_21565311_SNP [dm6]	C	T	5.646e^-5	0.735	UPSTREAM CG7634 INTERGENIC
2R	19537893	2R_19537893_SNP [dm3] 2R_23650370_SNP [dm6]	G	A	5.737e^-5	0.738	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16775051	2R_16775051_SNP [dm3] 2R_20887546_SNP [dm6]	T	C	5.742e^-5	0.738	INTRON otp	TF binding site mE1_TFBS_HSA
X	10133943	X_10133943_SNP [dm3] X_10239910_SNP [dm6]	G	A	5.847e^-5	0.745	INTRON Hk
3R	10370500	3R_10370500_SNP [dm3] 3R_14544778_SNP [dm6]	G	A	5.956e^-5	0.745	INTRON Pde6
2R	19537885	2R_19537885_SNP [dm3] 2R_23650362_SNP [dm6]	C	T	6.003e^-5	0.745	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13736989	2L_13736989_SNP [dm3] 2L_13736989_SNP [dm6]	A	C	6.051e^-5	0.745	UTR_3_PRIME CG31813 DOWNSTREAM CG31813
3R	20946261	3R_20946261_SNP [dm3] 3R_25120539_SNP [dm6]	C	A	6.072e^-5	0.745	NON_SYNONYMOUS_CODING CG31510 INTRON CG31108	TF binding site mE1_TFBS_sens
3R	17399788	3R_17399788_SNP [dm3] 3R_21574066_SNP [dm6]	A	G	6.079e^-5	0.745	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16788598	2R_16788598_SNP [dm3] 2R_20901093_SNP [dm6]	G	A	6.081e^-5	0.745	INTRON otp	TF binding site mE1_TFBS_HSA
3R	17410967	3R_17410967_SNP [dm3] 3R_21585245_SNP [dm6]	A	C	6.257e^-5	0.753	INTRON InR
2L	12247737	2L_12247737_SNP [dm3] 2L_12247737_SNP [dm6]	A	G	6.315e^-5	0.753	INTRON aret
2L	7468953	2L_7468953_SNP [dm3] 2L_7468953_SNP [dm6]	A	T	6.341e^-5	0.753	INTRON CG6055
2L	7565603	2L_7565603_SNP [dm3] 2L_7565603_SNP [dm6]	A	G	6.407e^-5	0.753	INTRON RapGAP1
X	2366853	X_2366853_SNP [dm3] X_2472820_SNP [dm6]	C	T	6.410e^-5	0.753	INTRON trol
2L	18754216	2L_18754216_SNP [dm3] 2L_18754216_SNP [dm6]	A	G	6.411e^-5	0.753	INTERGENIC
2R	5607112	2R_5607112_SNP [dm3] 2R_9719607_SNP [dm6]	A	G	6.516e^-5	0.753	SYNONYMOUS_CODING sqa
X	8696471	X_8696471_SNP [dm3] X_8802438_SNP [dm6]	T	G	6.539e^-5	0.753	INTRON Lim1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3942858	X_3942858_SNP [dm3] X_4048825_SNP [dm6]	T	C	6.592e^-5	0.753	EXON CR45482
3R	17410805	3R_17410805_SNP [dm3] 3R_21585083_SNP [dm6]	T	G	6.626e^-5	0.753	INTRON InR
2L	4945719	2L_4945719_SNP [dm3] 2L_4945719_SNP [dm6]	C	T	6.629e^-5	0.753	UPSTREAM mRpL24 INTRON betaggt-I	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14542262	3L_14542262_SNP [dm3] 3L_14549162_SNP [dm6]	A	C	6.693e^-5	0.753	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12635086	X_12635086_SNP [dm3] X_12741053_SNP [dm6]	A	C	6.731e^-5	0.753	INTRON Smr
2L	19028471	2L_19028471_SNP [dm3] 2L_19028471_SNP [dm6]	G	A	6.734e^-5	0.753	INTRON Side
2L	12206951	2L_12206951_SNP [dm3] 2L_12206951_SNP [dm6]	C	T	6.746e^-5	0.753	UPSTREAM CG31759 INTRON aret
3L	12711727	3L_12711727_SNP [dm3] 3L_12718627_SNP [dm6]	A	G	6.912e^-5	0.767	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	19537891	2R_19537891_SNP [dm3] 2R_23650368_SNP [dm6]	A	T	6.970e^-5	0.769	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9459153	X_9459153_SNP [dm3] X_9565120_SNP [dm6]	T	G	7.028e^-5	0.769	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_HSA
2R	20219246	2R_20219246_SNP [dm3] 2R_24331723_SNP [dm6]	T	C	7.093e^-5	0.769	UTR_3_PRIME slbo
3L	9739313	3L_9739313_SNP [dm3] 3L_9746213_SNP [dm6]	A	G	7.093e^-5	0.769	INTRON CG42268
2R	12346130	2R_12346130_SNP [dm3] 2R_16458625_SNP [dm6]	T	A	7.134e^-5	0.769	INTERGENIC
3R	10599078	3R_10599078_SNP [dm3] 3R_14773356_SNP [dm6]	A	G	7.234e^-5	0.775	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16692566	2L_16692566_SNP [dm3] 2L_16692566_SNP [dm6]	A	T	7.343e^-5	0.78	INTRON grp
2L	13034001	2L_13034001_SNP [dm3] 2L_13034001_SNP [dm6]	G	A	7.428e^-5	0.78	INTRON CG9932
2R	14508307	2R_14508307_SNP [dm3] 2R_18620802_SNP [dm6]	A	T	7.450e^-5	0.78	UPSTREAM CG5335 INTRON Atg7
X	2585746	X_2585746_SNP [dm3] X_2691713_SNP [dm6]	G	A	7.552e^-5	0.78	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
2R	17395513	2R_17395513_SNP [dm3] 2R_21508008_SNP [dm6]	T	G	7.556e^-5	0.78	INTRON MESK2
2R	17395595	2R_17395595_SNP [dm3] 2R_21508090_SNP [dm6]	C	T	7.556e^-5	0.78	INTRON MESK2
3L	9735039	3L_9735039_SNP [dm3] 3L_9741939_SNP [dm6]	A	T	7.569e^-5	0.78	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7573263	2L_7573263_DEL [dm3] 2L_7573263_DEL [dm6]	TTTGCTTTTATCACA...	G	7.811e^-5	0.797	INTRON RapGAP1
X	10322948	X_10322948_DEL [dm3] X_10428915_DEL [dm6]	TACAAACATATCC...	T	7.871e^-5	0.797	INTRON CG32683
X	10322962	X_10322962_SNP [dm3] X_10428929_SNP [dm6]	A	T	7.871e^-5	0.797	INTRON CG32683
3L	6513561	3L_6513561_SNP [dm3] 3L_6520461_SNP [dm6]	G	A	7.904e^-5	0.797	INTRON sfl
2L	16412312	2L_16412312_SNP [dm3] 2L_16412312_SNP [dm6]	A	C	7.999e^-5	0.797	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	21922596	2L_21922596_SNP [dm3] 2L_21922596_SNP [dm6]	G	A	8.005e^-5	0.797	INTERGENIC
2L	13033987	2L_13033987_SNP [dm3] 2L_13033987_SNP [dm6]	T	C	8.066e^-5	0.797	INTRON CG9932
X	10411219	X_10411219_DEL [dm3] X_10517186_DEL [dm6]	GT	A	8.109e^-5	0.797	INTRON spri
X	6821936	X_6821936_SNP [dm3] X_6927903_SNP [dm6]	T	C	8.138e^-5	0.797	INTRON CG14431	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15846239	3R_15846239_SNP [dm3] 3R_20020517_SNP [dm6]	A	C	8.211e^-5	0.797	SYNONYMOUS_CODING CG4433	TF binding site mE1_TFBS_sens
2R	17706151	2R_17706151_SNP [dm3] 2R_21818646_SNP [dm6]	T	C	8.215e^-5	0.797	INTERGENIC	transposable element FlyBase
2R	19654924	2R_19654924_SNP [dm3] 2R_23767401_SNP [dm6]	A	G	8.289e^-5	0.797	SYNONYMOUS_CODING CG9850
3L	16661482	3L_16661482_SNP [dm3] 3L_16668382_SNP [dm6]	T	A	8.357e^-5	0.797	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	1435459	3L_1435459_SNP [dm3] 3L_1435459_SNP [dm6]	T	G	8.390e^-5	0.797	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10322966	X_10322966_DEL [dm3] X_10428933_DEL [dm6]	AAACAAATGTTTGGTTCAAT...	A	8.428e^-5	0.797	INTRON CG32683
X	9485675	X_9485675_SNP [dm3] X_9591642_SNP [dm6]	A	T	8.464e^-5	0.797	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19537860	2R_19537860_SNP [dm3] 2R_23650337_SNP [dm6]	T	A	8.468e^-5	0.797	INTRON retn	TF binding site BDTNP1_TFBS_twi
3L	10046671	3L_10046671_SNP [dm3] 3L_10053571_SNP [dm6]	T	C	8.495e^-5	0.797	INTRON dpr6
2R	16417606	2R_16417606_SNP [dm3] 2R_20530101_SNP [dm6]	A	G	8.660e^-5	0.799	UPSTREAM CG30151 INTERGENIC
3L	5862737	3L_5862737_INS [dm3] 3L_5869637_INS [dm6]	A	ATTTAAAACAAAAA...	8.687e^-5	0.799	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	7488969	X_7488969_DEL [dm3] X_7594936_DEL [dm6]	GTT	G	8.718e^-5	0.799	INTERGENIC	regulatory region REDfly_CRMs
X	3123555	X_3123555_SNP [dm3] X_3229522_SNP [dm6]	A	G	8.746e^-5	0.799	INTRON dnc
X	10776023	X_10776023_SNP [dm3] X_10881990_SNP [dm6]	G	A	8.804e^-5	0.799	SYNONYMOUS_CODING Ork1
3L	10159609	3L_10159609_SNP [dm3] 3L_10166509_SNP [dm6]	G	T	8.805e^-5	0.799	NON_SYNONYMOUS_CODING CG6628 INTRON dpr10
2L	14003465	2L_14003465_SNP [dm3] 2L_14003465_SNP [dm6]	G	C	8.921e^-5	0.799	INTERGENIC
2L	13736861	2L_13736861_SNP [dm3] 2L_13736861_SNP [dm6]	A	T	8.937e^-5	0.799	UTR_3_PRIME CG31813 DOWNSTREAM CG31813
2R	16776903	2R_16776903_SNP [dm3] 2R_20889398_SNP [dm6]	T	C	8.999e^-5	0.799	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1472324	2L_1472324_SNP [dm3] 2L_1472324_SNP [dm6]	G	A	9.001e^-5	0.799	INTERGENIC
2L	8555102	2L_8555102_SNP [dm3] 2L_8555102_SNP [dm6]	C	T	9.026e^-5	0.799	INTRON Sema-1a
3R	17408762	3R_17408762_DEL [dm3] 3R_21583040_DEL [dm6]	TCATTGTTGTTGACGCCTTT...	GGTACTTGAC	9.073e^-5	0.799	INTRON InR	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	1041781	3L_1041781_SNP [dm3] 3L_1041781_SNP [dm6]	C	A	9.074e^-5	0.799	INTRON bab1
2L	8005127	2L_8005127_SNP [dm3] 2L_8005127_SNP [dm6]	G	A	9.165e^-5	0.803	SYNONYMOUS_CODING Spn28Dc UPSTREAM Wwox	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9611692	2L_9611692_SNP [dm3] 2L_9611692_SNP [dm6]	G	C	9.268e^-5	0.806	NON_SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14000854	3L_14000854_SNP [dm3] 3L_14007754_SNP [dm6]	T	C	9.395e^-5	0.806	UTR_5_PRIME upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27476482	3R_27476482_SNP [dm3] 3R_31650760_SNP [dm6]	G	A	9.419e^-5	0.806	INTRON kek6
2L	7573363	2L_7573363_SNP [dm3] 2L_7573363_SNP [dm6]	A	G	9.433e^-5	0.806	INTRON RapGAP1
2L	2992942	2L_2992942_SNP [dm3] 2L_2992942_SNP [dm6]	T	G	9.453e^-5	0.806	UTR_5_PRIME CG3558 UPSTREAM CG3558 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18597218	3L_18597218_SNP [dm3] 3L_18604118_SNP [dm6]	T	A	9.454e^-5	0.806	NON_SYNONYMOUS_CODING CG18234 INTRON CG4174 & 1 other
3R	20946266	3R_20946266_SNP [dm3] 3R_25120544_SNP [dm6]	C	A	9.611e^-5	0.808	NON_SYNONYMOUS_CODING CG31510 INTRON CG31108	TF binding site mE1_TFBS_sens
2L	21263771	2L_21263771_SNP [dm3] 2L_21263771_SNP [dm6]	A	G	9.611e^-5	0.808	UTR_5_PRIME CG8671 UPSTREAM mir-4974	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	15876004	3R_15876004_SNP [dm3] 3R_20050282_SNP [dm6]	G	C	9.658e^-5	0.808	INTRON CG17193
3L	13291651	3L_13291651_SNP [dm3] 3L_13298551_SNP [dm6]	C	T	9.683e^-5	0.808	UPSTREAM CR45255 DOWNSTREAM CR45253 & 1 other EXON CR45254	TF binding site BDTNP1_TFBS_prd
3L	1969139	3L_1969139_SNP [dm3] 3L_1969139_SNP [dm6]	T	A	9.714e^-5	0.808	INTRON CG1927
3L	11321492	3L_11321492_SNP [dm3] 3L_11328392_SNP [dm6]	G	C	9.752e^-5	0.808	INTERGENIC
2L	19020185	2L_19020185_SNP [dm3] 2L_19020185_SNP [dm6]	A	C	9.774e^-5	0.808	UPSTREAM CR44184 INTERGENIC
2L	18754369	2L_18754369_SNP [dm3] 2L_18754369_SNP [dm6]	C	G	9.903e^-5	0.808	INTERGENIC
3L	1435461	3L_1435461_SNP [dm3] 3L_1435461_SNP [dm6]	A	G	9.910e^-5	0.808	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19537907	2R_19537907_SNP [dm3] 2R_23650384_SNP [dm6]	C	T	1.002e^-4	0.808	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16442945	3R_16442945_SNP [dm3] 3R_20617223_SNP [dm6]	A	G	1.003e^-4	0.808	UPSTREAM CG5466 & 1 other INTERGENIC
X	17524758	X_17524758_SNP [dm3] X_17630725_SNP [dm6]	C	T	1.006e^-4	0.808	NON_SYNONYMOUS_CODING CG8316	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10160134	3L_10160134_SNP [dm3] 3L_10167034_SNP [dm6]	T	G	1.007e^-4	0.808	UPSTREAM CG6628 INTRON dpr10
3L	5862007	3L_5862007_SNP [dm3] 3L_5868907_SNP [dm6]	A	G	1.011e^-4	0.808	INTERGENIC
X	12635097	X_12635097_DEL [dm3] X_12741064_DEL [dm6]	TT	T	1.012e^-4	0.808	INTRON Smr
2L	5715458	2L_5715458_SNP [dm3] 2L_5715458_SNP [dm6]	T	A	1.019e^-4	0.808	UTR_3_PRIME CG14007 UPSTREAM CR44818
2R	17154102	2R_17154102_SNP [dm3] 2R_21266597_SNP [dm6]	T	G	1.023e^-4	0.808	SYNONYMOUS_CODING CG30393 UPSTREAM CG30391 INTRON Rgk3
3L	16145548	3L_16145548_SNP [dm3] 3L_16152448_SNP [dm6]	T	C	1.035e^-4	0.808	INTRON CG5151
X	13711517	X_13711517_SNP [dm3] X_13817484_SNP [dm6]	T	A	1.037e^-4	0.808	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7573213	2L_7573213_SNP [dm3] 2L_7573213_SNP [dm6]	C	A	1.041e^-4	0.808	INTRON RapGAP1
3R	19775495	3R_19775495_SNP [dm3] 3R_23949773_SNP [dm6]	C	G	1.046e^-4	0.808	INTERGENIC
2L	16412287	2L_16412287_INS [dm3] 2L_16412287_INS [dm6]	AA	CTC	1.047e^-4	0.808	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19190039	2R_19190039_SNP [dm3] 2R_23302516_SNP [dm6]	A	T	1.047e^-4	0.808	INTERGENIC
2L	10555174	2L_10555174_SNP [dm3] 2L_10555174_SNP [dm6]	A	G	1.058e^-4	0.813	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9485692	X_9485692_SNP [dm3] X_9591659_SNP [dm6]	T	C	1.068e^-4	0.815	INTERGENIC	TF binding site mE1_TFBS_inv
2L	753359	2L_753359_SNP [dm3] 2L_753359_SNP [dm6]	A	G	1.069e^-4	0.815	NON_SYNONYMOUS_CODING GABA-B-R3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7573179	2L_7573179_DEL [dm3] 2L_7573179_DEL [dm6]	GCGTTGGCAAAACG...	G	1.082e^-4	0.821	INTRON RapGAP1
X	9485890	X_9485890_DEL [dm3] X_9591857_DEL [dm6]	CG	C	1.094e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_inv
3L	20725244	3L_20725244_SNP [dm3] 3L_20732144_SNP [dm6]	C	A	1.096e^-4	0.826	INTRON CG13252
X	3123564	X_3123564_SNP [dm3] X_3229531_SNP [dm6]	A	G	1.102e^-4	0.827	INTRON dnc
3L	18597219	3L_18597219_SNP [dm3] 3L_18604119_SNP [dm6]	C	T	1.107e^-4	0.828	SYNONYMOUS_CODING CG18234 INTRON CG4174 & 1 other
3R	17375670	3R_17375670_SNP [dm3] 3R_21549948_SNP [dm6]	C	T	1.114e^-4	0.829	INTRON slou
2L	10497745	2L_10497745_SNP [dm3] 2L_10497745_SNP [dm6]	G	A	1.119e^-4	0.829	INTRON Myo31DF
3R	15846242	3R_15846242_SNP [dm3] 3R_20020520_SNP [dm6]	G	A	1.124e^-4	0.83	SYNONYMOUS_CODING CG4433	TF binding site mE1_TFBS_sens
2L	19883467	2L_19883467_SNP [dm3] 2L_19883467_SNP [dm6]	T	A	1.140e^-4	0.834	INTRON sick
X	8772442	X_8772442_INS [dm3] X_8878409_INS [dm6]	G	GG	1.149e^-4	0.834	INTRON Moe
2R	17680237	2R_17680237_SNP [dm3] 2R_21792732_SNP [dm6]	C	G	1.159e^-4	0.834	INTERGENIC
2L	1472336	2L_1472336_SNP [dm3] 2L_1472336_SNP [dm6]	C	T	1.159e^-4	0.834	INTERGENIC
2R	19460975	2R_19460975_SNP [dm3] 2R_23573452_SNP [dm6]	T	C	1.162e^-4	0.834	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12145981	2L_12145981_SNP [dm3] 2L_12145981_SNP [dm6]	G	T	1.163e^-4	0.834	INTRON CG31760
3L	20567121	3L_20567121_SNP [dm3] 3L_20574021_SNP [dm6]	T	C	1.164e^-4	0.834	INTERGENIC
3L	1403387	3L_1403387_SNP [dm3] 3L_1403387_SNP [dm6]	G	A	1.165e^-4	0.834	INTRON Ptp61F
2L	2996584	2L_2996584_SNP [dm3] 2L_2996584_SNP [dm6]	G	A	1.172e^-4	0.836	SYNONYMOUS_CODING CG3558
2L	13542941	2L_13542941_SNP [dm3] 2L_13542941_SNP [dm6]	A	C	1.181e^-4	0.839	NON_SYNONYMOUS_CODING CG16853 UPSTREAM CG9263 INTRON B4	TF binding site mE1_TFBS_sens
2L	18754377	2L_18754377_SNP [dm3] 2L_18754377_SNP [dm6]	C	A	1.186e^-4	0.839	INTERGENIC
X	3168759	X_3168759_SNP [dm3] X_3274726_SNP [dm6]	G	T	1.190e^-4	0.839	INTRON dnc
2L	7957515	2L_7957515_SNP [dm3] 2L_7957515_SNP [dm6]	G	A	1.203e^-4	0.845	INTRON Snoo
3R	17411486	3R_17411486_SNP [dm3] 3R_21585764_SNP [dm6]	C	T	1.210e^-4	0.847	INTRON InR
2L	13630308	2L_13630308_SNP [dm3] 2L_13630308_SNP [dm6]	C	G	1.235e^-4	0.85	INTRON kuz
3L	18150847	3L_18150847_SNP [dm3] 3L_18157747_SNP [dm6]	C	T	1.242e^-4	0.85	INTRON CG13699
3R	18721782	3R_18721782_SNP [dm3] 3R_22896060_SNP [dm6]	T	A	1.242e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19886189	2L_19886189_SNP [dm3] 2L_19886189_SNP [dm6]	A	G	1.246e^-4	0.85	INTRON sick
3R	21163680	3R_21163680_SNP [dm3] 3R_25337958_SNP [dm6]	G	A	1.254e^-4	0.85	SYNONYMOUS_CODING CG11902	TF binding site mE1_TFBS_sens
3L	16351824	3L_16351824_SNP [dm3] 3L_16358724_SNP [dm6]	A	T	1.259e^-4	0.85	INTRON CG45057
2L	21259781	2L_21259781_SNP [dm3] 2L_21259781_SNP [dm6]	T	C	1.261e^-4	0.85	DOWNSTREAM Hr39 INTERGENIC
3L	10045563	3L_10045563_SNP [dm3] 3L_10052463_SNP [dm6]	T	A	1.262e^-4	0.85	INTRON dpr6
3R	17406332	3R_17406332_SNP [dm3] 3R_21580610_SNP [dm6]	C	T	1.267e^-4	0.85	UTR_5_PRIME InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	9612014	2L_9612014_SNP [dm3] 2L_9612014_SNP [dm6]	G	A	1.277e^-4	0.85	NON_SYNONYMOUS_CODING gcm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	13736830	2L_13736830_SNP [dm3] 2L_13736830_SNP [dm6]	T	G	1.283e^-4	0.85	UTR_3_PRIME CG31813 DOWNSTREAM CG31813	TF binding site mE1_TFBS_cad
2R	17642685	2R_17642685_SNP [dm3] 2R_21755180_SNP [dm6]	A	C	1.285e^-4	0.85	INTERGENIC
3R	16442886	3R_16442886_INS [dm3] 3R_20617164_INS [dm6]	T	TT	1.286e^-4	0.85	UPSTREAM CG5466 & 1 other INTERGENIC
3L	10885821	3L_10885821_SNP [dm3] 3L_10892721_SNP [dm6]	T	A	1.312e^-4	0.85	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3R	22154997	3R_22154997_SNP [dm3] 3R_26329275_SNP [dm6]	C	T	1.321e^-4	0.85	INTRON CG33970
2R	18981261	2R_18981261_SNP [dm3] 2R_23093738_SNP [dm6]	T	A	1.329e^-4	0.85	NON_SYNONYMOUS_CODING CG9876
X	1028719	X_1028719_SNP [dm3] X_1134686_SNP [dm6]	T	C	1.329e^-4	0.85	UTR_5_PRIME CG3655	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3770769	2L_3770769_SNP [dm3] 2L_3770769_SNP [dm6]	T	A	1.332e^-4	0.85	UPSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	3758492	2L_3758492_SNP [dm3] 2L_3758492_SNP [dm6]	C	A	1.339e^-4	0.85	INTRON CG43707
3R	15969147	3R_15969147_SNP [dm3] 3R_20143425_SNP [dm6]	A	G	1.358e^-4	0.85	INTERGENIC
2L	18754429	2L_18754429_SNP [dm3] 2L_18754429_SNP [dm6]	G	A	1.359e^-4	0.85	INTERGENIC
2L	2992849	2L_2992849_SNP [dm3] 2L_2992849_SNP [dm6]	C	T	1.360e^-4	0.85	UPSTREAM CG3558 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21163717	3R_21163717_SNP [dm3] 3R_25337995_SNP [dm6]	G	A	1.361e^-4	0.85	NON_SYNONYMOUS_CODING CG11902	TF binding site mE1_TFBS_sens
3L	16693716	3L_16693716_SNP [dm3] 3L_16700616_SNP [dm6]	T	C	1.364e^-4	0.85	INTRON Lasp & 1 other
2R	10848813	2R_10848813_DEL [dm3] 2R_14961308_DEL [dm6]	ATAAT	A	1.372e^-4	0.85	INTRON aPKC	TF binding site BDTNP1_TFBS_dl
X	13692987	X_13692987_INS [dm3] X_13798954_INS [dm6]	T	TCTT	1.384e^-4	0.85	INTRON inaE	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2932621	X_2932621_SNP [dm3] X_3038588_SNP [dm6]	C	T	1.386e^-4	0.85	INTRON kirre
3L	14587864	3L_14587864_SNP [dm3] 3L_14594764_SNP [dm6]	T	A	1.388e^-4	0.85	INTRON HGTX	TF binding site mE1_TFBS_cnc
2R	16787078	2R_16787078_SNP [dm3] 2R_20899573_SNP [dm6]	G	A	1.391e^-4	0.85	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	20249665	2R_20249665_SNP [dm3] 2R_24362142_SNP [dm6]	C	T	1.395e^-4	0.85	INTRON bs & 1 other
3R	10598899	3R_10598899_SNP [dm3] 3R_14773177_SNP [dm6]	C	T	1.406e^-4	0.85	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7327105	3L_7327105_SNP [dm3] 3L_7334005_SNP [dm6]	A	G	1.410e^-4	0.85	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26357392	3R_26357392_SNP [dm3] 3R_30531670_SNP [dm6]	A	T	1.417e^-4	0.85	UPSTREAM tmod INTRON CR45552 & 1 other	TF binding site mE1_TFBS_Trl
X	17834673	X_17834673_SNP [dm3] X_17940640_SNP [dm6]	T	G	1.418e^-4	0.85	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18946727	2R_18946727_SNP [dm3] 2R_23059204_SNP [dm6]	G	C	1.418e^-4	0.85	SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
2R	18946929	2R_18946929_SNP [dm3] 2R_23059406_SNP [dm6]	G	A	1.418e^-4	0.85	SYNONYMOUS_CODING CG44252 DOWNSTREAM CG44253
2L	12063230	2L_12063230_SNP [dm3] 2L_12063230_SNP [dm6]	G	T	1.419e^-4	0.85	UPSTREAM Rab3-GAP DOWNSTREAM CG14946 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5752356	3R_5752356_SNP [dm3] 3R_9926634_SNP [dm6]	G	T	1.419e^-4	0.85	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11649044	2R_11649044_SNP [dm3] 2R_15761539_SNP [dm6]	A	T	1.426e^-4	0.85	UTR_3_PRIME CG30089 DOWNSTREAM CG30089	TF binding site mE1_TFBS_sens
3R	16207569	3R_16207569_DEL [dm3] 3R_20381847_DEL [dm6]	TT	T	1.433e^-4	0.85	INTRON Gfrl
3L	11060601	3L_11060601_SNP [dm3] 3L_11067501_SNP [dm6]	T	C	1.449e^-4	0.85	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101	TF binding site mE1_TFBS_sens
3R	6678300	3R_6678300_SNP [dm3] 3R_10852578_SNP [dm6]	G	A	1.453e^-4	0.85	UPSTREAM CG4565 DOWNSTREAM CG42394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26858760	3R_26858760_SNP [dm3] 3R_31033038_SNP [dm6]	C	A	1.460e^-4	0.85	INTERGENIC
3R	22952322	3R_22952322_SNP [dm3] 3R_27126600_SNP [dm6]	G	A	1.463e^-4	0.85	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14270385	2R_14270385_SNP [dm3] 2R_18382880_SNP [dm6]	T	C	1.468e^-4	0.85	NON_SYNONYMOUS_CODING IM23
2R	17642757	2R_17642757_SNP [dm3] 2R_21755252_SNP [dm6]	T	G	1.471e^-4	0.85	INTERGENIC
2L	3498721	2L_3498721_SNP [dm3] 2L_3498721_SNP [dm6]	C	T	1.476e^-4	0.85	INTRON tim
3R	17411412	3R_17411412_SNP [dm3] 3R_21585690_SNP [dm6]	A	T	1.483e^-4	0.85	INTRON InR
2L	19021176	2L_19021176_SNP [dm3] 2L_19021176_SNP [dm6]	T	C	1.484e^-4	0.85	INTERGENIC
3L	3376872	3L_3376872_SNP [dm3] 3L_3376872_SNP [dm6]	C	T	1.487e^-4	0.85	UTR_5_PRIME CG12012 DOWNSTREAM CG12010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15814436	3R_15814436_SNP [dm3] 3R_19988714_SNP [dm6]	C	T	1.489e^-4	0.85	INTRON Hs6st	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6246749	2R_6246749_SNP [dm3] 2R_10359244_SNP [dm6]	C	T	1.496e^-4	0.85	UPSTREAM CG43396 INTRON CG42732	TF binding site BDTNP1_TFBS_twi
3R	25360126	3R_25360126_DEL [dm3] 3R_29534404_DEL [dm6]	AAA	A	1.496e^-4	0.85	UPSTREAM CR43613 INTERGENIC
X	10775915	X_10775915_SNP [dm3] X_10881882_SNP [dm6]	T	C	1.499e^-4	0.85	INTRON Ork1
2R	9097711	2R_9097711_SNP [dm3] 2R_13210206_SNP [dm6]	G	T	1.502e^-4	0.85	UTR_3_PRIME FLASH DOWNSTREAM FLASH INTRON CG30058 & 2 others
3L	18569704	3L_18569704_SNP [dm3] 3L_18576604_SNP [dm6]	A	G	1.502e^-4	0.85	DOWNSTREAM AstC-R1 INTERGENIC
3R	25135538	3R_25135538_SNP [dm3] 3R_29309816_SNP [dm6]	C	G	1.505e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19751564	3R_19751564_SNP [dm3] 3R_23925842_SNP [dm6]	A	G	1.506e^-4	0.85	SYNONYMOUS_CODING Ndc1 DOWNSTREAM CG13601	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8225909	2L_8225909_SNP [dm3] 2L_8225909_SNP [dm6]	G	A	1.509e^-4	0.85	SYNONYMOUS_CODING Pvr
2L	1399138	2L_1399138_SNP [dm3] 2L_1399138_SNP [dm6]	A	G	1.515e^-4	0.85	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	13158456	3R_13158456_SNP [dm3] 3R_17332734_SNP [dm6]	G	A	1.525e^-4	0.85	INTRON beat-IIa
3L	10885839	3L_10885839_SNP [dm3] 3L_10892739_SNP [dm6]	C	T	1.527e^-4	0.85	DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3L	481652	3L_481652_SNP [dm3] 3L_481652_SNP [dm6]	G	C	1.528e^-4	0.85	INTRON klar
2L	10502990	2L_10502990_SNP [dm3] 2L_10502990_SNP [dm6]	T	A	1.529e^-4	0.85	INTRON Myo31DF
2R	19184792	2R_19184792_SNP [dm3] 2R_23297269_SNP [dm6]	T	C	1.529e^-4	0.85	INTERGENIC
2L	8024028	2L_8024028_SNP [dm3] 2L_8024028_SNP [dm6]	T	A	1.534e^-4	0.85	INTRON Tg	regulatory region REDfly_CRMs
3R	13361960	3R_13361960_SNP [dm3] 3R_17536238_SNP [dm6]	C	T	1.541e^-4	0.85	SYNONYMOUS_CODING P5cr-2 UTR_5_PRIME P5cr-2 DOWNSTREAM l_3_07882	TF binding site mE1_TFBS_sens
X	1027701	X_1027701_SNP [dm3] X_1133668_SNP [dm6]	A	G	1.544e^-4	0.85	INTRON CG3655	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	6513983	3L_6513983_SNP [dm3] 3L_6520883_SNP [dm6]	T	G	1.544e^-4	0.85	INTRON sfl
2L	19037993	2L_19037993_INS [dm3] 2L_19037993_INS [dm6]	A	AA	1.546e^-4	0.85	INTRON mib2	TF binding site mE1_TFBS_cad
2R	15148994	2R_15148994_SNP [dm3] 2R_19261489_SNP [dm6]	G	C	1.548e^-4	0.85	SYNONYMOUS_CODING CG7229	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	4159196	2R_4159196_SNP [dm3] 2R_8271691_SNP [dm6]	A	C	1.551e^-4	0.85	INTERGENIC
2R	18379098	2R_18379098_SNP [dm3] 2R_22491593_SNP [dm6]	A	C	1.585e^-4	0.85	NON_SYNONYMOUS_CODING CG4554 UPSTREAM CG4610	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8531399	2R_8531399_SNP [dm3] 2R_12643894_SNP [dm6]	A	C	1.599e^-4	0.85	NON_SYNONYMOUS_CODING CG8785	TF binding site mE1_TFBS_cad
2L	2992903	2L_2992903_SNP [dm3] 2L_2992903_SNP [dm6]	T	A	1.599e^-4	0.85	UTR_5_PRIME CG3558 UPSTREAM CG3558 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25398105	3R_25398105_SNP [dm3] 3R_29572383_SNP [dm6]	A	T	1.600e^-4	0.85	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	12399748	3L_12399748_SNP [dm3] 3L_12406648_SNP [dm6]	A	T	1.602e^-4	0.85	INTRON CG32103
2L	2991148	2L_2991148_SNP [dm3] 2L_2991148_SNP [dm6]	C	T	1.607e^-4	0.85	SYNONYMOUS_CODING okr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14574281	2L_14574281_SNP [dm3] 2L_14574281_SNP [dm6]	A	T	1.618e^-4	0.85	INTERGENIC
X	10133939	X_10133939_SNP [dm3] X_10239906_SNP [dm6]	A	T	1.618e^-4	0.85	INTRON Hk
3R	26357185	3R_26357185_SNP [dm3] 3R_30531463_SNP [dm6]	A	G	1.620e^-4	0.85	INTRON CR45552 EXON CR45553
X	5166497	X_5166497_SNP [dm3] X_5272464_SNP [dm6]	G	A	1.624e^-4	0.85	INTERGENIC
3R	6342777	3R_6342777_SNP [dm3] 3R_10517055_SNP [dm6]	T	G	1.625e^-4	0.85	INTRON hth
X	10482423	X_10482423_SNP [dm3] X_10588390_SNP [dm6]	T	G	1.628e^-4	0.85	UPSTREAM Rab9D INTERGENIC
3L	9975361	3L_9975361_SNP [dm3] 3L_9982261_SNP [dm6]	A	G	1.630e^-4	0.85	INTRON dpr6
2L	8494114	2L_8494114_SNP [dm3] 2L_8494114_SNP [dm6]	T	G	1.640e^-4	0.85	DOWNSTREAM Bace INTRON Dh31
X	3168745	X_3168745_SNP [dm3] X_3274712_SNP [dm6]	G	A	1.649e^-4	0.85	INTRON dnc
X	9882573	X_9882573_SNP [dm3] X_9988540_SNP [dm6]	T	A	1.656e^-4	0.85	INTERGENIC
2L	7876157	2L_7876157_SNP [dm3] 2L_7876157_SNP [dm6]	C	T	1.657e^-4	0.85	SYNONYMOUS_CODING spz3
X	9109219	X_9109219_SNP [dm3] X_9215186_SNP [dm6]	C	A	1.661e^-4	0.85	NON_SYNONYMOUS_CODING Obp8a UPSTREAM CG15368
2R	2858494	2R_2858494_SNP [dm3] 2R_6970989_SNP [dm6]	A	T	1.669e^-4	0.85	UTR_5_PRIME mim & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18721801	3R_18721801_SNP [dm3] 3R_22896079_SNP [dm6]	C	G	1.675e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2992844	2L_2992844_SNP [dm3] 2L_2992844_SNP [dm6]	G	A	1.683e^-4	0.85	UPSTREAM CG3558 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10588674	3L_10588674_SNP [dm3] 3L_10595574_SNP [dm6]	G	A	1.694e^-4	0.85	INTERGENIC
3L	20725175	3L_20725175_SNP [dm3] 3L_20732075_SNP [dm6]	G	T	1.701e^-4	0.85	INTRON CG13252
3R	13126223	3R_13126223_SNP [dm3] 3R_17300501_SNP [dm6]	A	T	1.704e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6731881	3L_6731881_SNP [dm3] 3L_6738781_SNP [dm6]	G	A	1.706e^-4	0.85	SYNONYMOUS_CODING dikar UTR_3_PRIME dikar
2R	12600063	2R_12600063_SNP [dm3] 2R_16712558_SNP [dm6]	A	G	1.710e^-4	0.85	INTRON CG30463
3R	9770952	3R_9770952_SNP [dm3] 3R_13945230_SNP [dm6]	G	A	1.711e^-4	0.85	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7573280	2L_7573280_SNP [dm3] 2L_7573280_SNP [dm6]	T	C	1.727e^-4	0.85	INTRON RapGAP1
2R	18788306	2R_18788306_SNP [dm3] 2R_22900783_SNP [dm6]	C	T	1.733e^-4	0.85	INTRON nahoda
2L	7531292	2L_7531292_SNP [dm3] 2L_7531292_SNP [dm6]	T	C	1.746e^-4	0.85	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	20725238	3L_20725238_SNP [dm3] 3L_20732138_SNP [dm6]	G	A	1.755e^-4	0.85	INTRON CG13252
2L	16412303	2L_16412303_SNP [dm3] 2L_16412303_SNP [dm6]	C	T	1.760e^-4	0.85	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	13346753	3L_13346753_SNP [dm3] 3L_13353653_SNP [dm6]	G	A	1.772e^-4	0.85	SYNONYMOUS_CODING CG17687
3R	16262668	3R_16262668_SNP [dm3] 3R_20436946_SNP [dm6]	A	G	1.774e^-4	0.85	INTRON Gfrl
3R	13145823	3R_13145823_SNP [dm3] 3R_17320101_SNP [dm6]	T	C	1.777e^-4	0.85	UTR_3_PRIME beat-IIa
2L	1472581	2L_1472581_SNP [dm3] 2L_1472581_SNP [dm6]	C	T	1.779e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18754162	2L_18754162_SNP [dm3] 2L_18754162_SNP [dm6]	T	A	1.782e^-4	0.85	INTERGENIC
3L	14676708	3L_14676708_SNP [dm3] 3L_14683608_SNP [dm6]	C	A	1.785e^-4	0.85	INTRON ome
3L	11062730	3L_11062730_SNP [dm3] 3L_11069630_SNP [dm6]	A	G	1.787e^-4	0.85	UPSTREAM Mocs1 DOWNSTREAM SuUR & 1 other INTRON CG6310
2L	14574307	2L_14574307_SNP [dm3] 2L_14574307_SNP [dm6]	G	A	1.802e^-4	0.85	INTERGENIC
X	10775928	X_10775928_SNP [dm3] X_10881895_SNP [dm6]	C	T	1.803e^-4	0.85	INTRON Ork1
3R	15971291	3R_15971291_SNP [dm3] 3R_20145569_SNP [dm6]	T	C	1.805e^-4	0.85	INTERGENIC
3L	13292802	3L_13292802_SNP [dm3] 3L_13299702_SNP [dm6]	T	A	1.809e^-4	0.85	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
3L	16728893	3L_16728893_SNP [dm3] 3L_16735793_SNP [dm6]	G	A	1.813e^-4	0.85	INTRON CG9701
2R	13920130	2R_13920130_INS [dm3] 2R_18032625_INS [dm6]	C	CGGTGCAACAAAAAACAAAA...	1.827e^-4	0.85	INTERGENIC
3R	19482153	3R_19482153_SNP [dm3] 3R_23656431_SNP [dm6]	G	C	1.831e^-4	0.85	INTRON CG31145
3L	5569726	3L_5569726_SNP [dm3] 3L_5576626_SNP [dm6]	G	C	1.840e^-4	0.85	INTRON Msr-110
2R	7438826	2R_7438826_SNP [dm3] 2R_11551321_SNP [dm6]	G	T	1.842e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10159435	3L_10159435_SNP [dm3] 3L_10166335_SNP [dm6]	G	T	1.842e^-4	0.85	SYNONYMOUS_CODING CG6628 INTRON dpr10
3R	26276669	3R_26276669_SNP [dm3] 3R_30450947_SNP [dm6]	C	A	1.846e^-4	0.85	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16925170	X_16925170_SNP [dm3] X_17031137_SNP [dm6]	T	C	1.858e^-4	0.85	INTRON CG45002
3R	17410178	3R_17410178_SNP [dm3] 3R_21584456_SNP [dm6]	A	G	1.863e^-4	0.85	INTRON InR
2L	13033876	2L_13033876_SNP [dm3] 2L_13033876_SNP [dm6]	C	T	1.879e^-4	0.85	INTRON CG9932
3R	15344327	3R_15344327_SNP [dm3] 3R_19518605_SNP [dm6]	G	A	1.883e^-4	0.85	INTRON Dys
2L	8793045	2L_8793045_SNP [dm3] 2L_8793045_SNP [dm6]	T	G	1.887e^-4	0.85	INTERGENIC
X	3060180	X_3060180_SNP [dm3] X_3166147_SNP [dm6]	G	A	1.889e^-4	0.85	SYNONYMOUS_CODING N	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	16412338	2L_16412338_SNP [dm3] 2L_16412338_SNP [dm6]	T	C	1.892e^-4	0.85	INTRON CG5888	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	18972875	2R_18972875_SNP [dm3] 2R_23085352_SNP [dm6]	C	T	1.896e^-4	0.85	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10561422	3L_10561422_SNP [dm3] 3L_10568322_SNP [dm6]	G	C	1.899e^-4	0.85	NON_SYNONYMOUS_CODING A2bp1 INTRON A2bp1
2L	19884366	2L_19884366_SNP [dm3] 2L_19884366_SNP [dm6]	T	G	1.905e^-4	0.85	INTRON sick
3L	16715373	3L_16715373_SNP [dm3] 3L_16722273_SNP [dm6]	C	A	1.906e^-4	0.85	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15846293	3R_15846293_SNP [dm3] 3R_20020571_SNP [dm6]	C	G	1.907e^-4	0.85	NON_SYNONYMOUS_CODING CG4433	TF binding site mE1_TFBS_sens
3L	10046164	3L_10046164_SNP [dm3] 3L_10053064_SNP [dm6]	G	A	1.918e^-4	0.85	INTRON dpr6
3R	5200527	3R_5200527_SNP [dm3] 3R_9374805_SNP [dm6]	A	T	1.919e^-4	0.85	UTR_5_PRIME FER INTRON FER	regulatory region REDfly_CRMs
2L	14574287	2L_14574287_SNP [dm3] 2L_14574287_SNP [dm6]	A	C	1.921e^-4	0.85	INTERGENIC
2R	11769643	2R_11769643_SNP [dm3] 2R_15882138_SNP [dm6]	T	C	1.921e^-4	0.85	INTRON sli
2L	14918126	2L_14918126_SNP [dm3] 2L_14918126_SNP [dm6]	G	T	1.923e^-4	0.85	INTRON CG42313
X	21329489	X_21329489_SNP [dm3] X_21458462_SNP [dm6]	G	A	1.923e^-4	0.85	UPSTREAM CG42343 INTERGENIC
2L	15472580	2L_15472580_SNP [dm3] 2L_15472580_SNP [dm6]	C	G	1.925e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18795502	2R_18795502_SNP [dm3] 2R_22907979_SNP [dm6]	C	T	1.926e^-4	0.85	INTRON nahoda	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4992788	2L_4992788_INS [dm3] 2L_4992788_INS [dm6]	A	AT	1.927e^-4	0.85	DOWNSTREAM Rtnl1 & 1 other INTERGENIC
X	9796700	X_9796700_SNP [dm3] X_9902667_SNP [dm6]	C	A	1.930e^-4	0.85	INTERGENIC
3L	18569713	3L_18569713_SNP [dm3] 3L_18576613_SNP [dm6]	A	G	1.938e^-4	0.85	DOWNSTREAM AstC-R1 INTERGENIC
3R	17962929	3R_17962929_SNP [dm3] 3R_22137207_SNP [dm6]	C	G	1.940e^-4	0.85	INTRON SKIP
2L	9505610	2L_9505610_SNP [dm3] 2L_9505610_SNP [dm6]	C	T	1.949e^-4	0.85	INTRON CG33298
3R	16439397	3R_16439397_SNP [dm3] 3R_20613675_SNP [dm6]	G	A	1.951e^-4	0.85	SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad
3L	11062378	3L_11062378_SNP [dm3] 3L_11069278_SNP [dm6]	T	C	1.951e^-4	0.85	SYNONYMOUS_CODING CG6310 DOWNSTREAM SuUR & 1 other
2R	14503931	2R_14503931_SNP [dm3] 2R_18616426_SNP [dm6]	A	G	1.956e^-4	0.85	DOWNSTREAM CG5493 & 1 other INTRON CG5327
2R	14572141	2R_14572141_SNP [dm3] 2R_18684636_SNP [dm6]	C	T	1.959e^-4	0.85	SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other
3L	5869583	3L_5869583_SNP [dm3] 3L_5876483_SNP [dm6]	G	A	1.960e^-4	0.85	INTERGENIC
2L	8010113	2L_8010113_SNP [dm3] 2L_8010113_SNP [dm6]	G	T	1.962e^-4	0.85	UPSTREAM CG12560 INTRON CG34010	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21163812	3R_21163812_SNP [dm3] 3R_25338090_SNP [dm6]	T	C	1.971e^-4	0.85	SYNONYMOUS_CODING CG11902	TF binding site mE1_TFBS_sens
2R	8530176	2R_8530176_SNP [dm3] 2R_12642671_SNP [dm6]	A	G	1.976e^-4	0.85	INTRON CG8785
3L	3153572	3L_3153572_SNP [dm3] 3L_3153572_SNP [dm6]	C	G	2.000e^-4	0.85	SYNONYMOUS_CODING BtbVII UTR_3_PRIME BtbVII INTRON BtbVII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19591873	2L_19591873_SNP [dm3] 2L_19591873_SNP [dm6]	T	C	2.010e^-4	0.85	INTRON Lar
3R	6332122	3R_6332122_SNP [dm3] 3R_10506400_SNP [dm6]	A	G	2.019e^-4	0.85	INTERGENIC
X	8372545	X_8372545_INS [dm3] X_8478512_INS [dm6]	A	AAGCTTCAAA	2.020e^-4	0.85	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
3R	15412728	3R_15412728_INS [dm3] 3R_19587006_INS [dm6]	T	TT	2.022e^-4	0.85	DOWNSTREAM snoRNA:Me18S-A1374 INTRON Dys
2L	2086699	2L_2086699_SNP [dm3] 2L_2086699_SNP [dm6]	A	G	2.031e^-4	0.85	INTRON dpr3
2R	9563757	2R_9563757_SNP [dm3] 2R_13676252_SNP [dm6]	T	C	2.034e^-4	0.85	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13630407	2L_13630407_SNP [dm3] 2L_13630407_SNP [dm6]	T	C	2.038e^-4	0.85	INTRON kuz
X	7491848	X_7491848_SNP [dm3] X_7597815_SNP [dm6]	C	T	2.042e^-4	0.85	INTERGENIC	regulatory region REDfly_CRMs
2R	18801389	2R_18801389_SNP [dm3] 2R_22913866_SNP [dm6]	A	T	2.067e^-4	0.85	INTRON nahoda
3R	16250600	3R_16250600_SNP [dm3] 3R_20424878_SNP [dm6]	G	A	2.083e^-4	0.85	INTRON Gfrl
3R	16250614	3R_16250614_SNP [dm3] 3R_20424892_SNP [dm6]	G	A	2.083e^-4	0.85	INTRON Gfrl
2L	2992939	2L_2992939_SNP [dm3] 2L_2992939_SNP [dm6]	G	A	2.087e^-4	0.85	UTR_5_PRIME CG3558 UPSTREAM CG3558 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2992873	2L_2992873_SNP [dm3] 2L_2992873_SNP [dm6]	A	C	2.098e^-4	0.85	UTR_5_PRIME CG3558 UPSTREAM CG3558 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8793011	2L_8793011_SNP [dm3] 2L_8793011_SNP [dm6]	C	A	2.101e^-4	0.85	INTERGENIC
3R	9990026	3R_9990026_SNP [dm3] 3R_14164304_SNP [dm6]	C	T	2.114e^-4	0.85	DOWNSTREAM CG3199 INTERGENIC
3L	11037676	3L_11037676_SNP [dm3] 3L_11044576_SNP [dm6]	C	T	2.117e^-4	0.85	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3L	6068237	3L_6068237_SNP [dm3] 3L_6075137_SNP [dm6]	A	G	2.121e^-4	0.85	UTR_5_PRIME CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13363070	3R_13363070_SNP [dm3] 3R_17537348_SNP [dm6]	A	G	2.130e^-4	0.85	SPLICE_SITE_REGION l_3_07882 DOWNSTREAM P5cr-2 INTRON l_3_07882
3R	6678418	3R_6678418_SNP [dm3] 3R_10852696_SNP [dm6]	G	A	2.140e^-4	0.85	UPSTREAM CG4565 DOWNSTREAM CG42394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	13033879	2L_13033879_SNP [dm3] 2L_13033879_SNP [dm6]	C	A	2.147e^-4	0.85	INTRON CG9932
2L	3239182	2L_3239182_SNP [dm3] 2L_3239182_SNP [dm6]	A	T	2.150e^-4	0.85	INTERGENIC
2R	7438834	2R_7438834_SNP [dm3] 2R_11551329_SNP [dm6]	T	A	2.176e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6678276	3R_6678276_SNP [dm3] 3R_10852554_SNP [dm6]	C	T	2.176e^-4	0.85	UPSTREAM CG4565 DOWNSTREAM CG42394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16412268	2L_16412268_SNP [dm3] 2L_16412268_SNP [dm6]	T	C	2.176e^-4	0.85	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	21164127	3R_21164127_SNP [dm3] 3R_25338405_SNP [dm6]	G	A	2.179e^-4	0.85	SYNONYMOUS_CODING CG11902	TF binding site mE1_TFBS_sens
3L	17131729	3L_17131729_SNP [dm3] 3L_17138629_SNP [dm6]	G	A	2.180e^-4	0.85	INTRON Rbp6
2R	16776706	2R_16776706_SNP [dm3] 2R_20889201_SNP [dm6]	T	G	2.180e^-4	0.85	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18157364	3R_18157364_SNP [dm3] 3R_22331642_SNP [dm6]	A	G	2.182e^-4	0.85	UPSTREAM CG13862 INTRON CG33721	TF binding site mE1_TFBS_inv
3R	19623204	3R_19623204_SNP [dm3] 3R_23797482_SNP [dm6]	C	T	2.182e^-4	0.85	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad
3L	5869649	3L_5869649_SNP [dm3] 3L_5876549_SNP [dm6]	A	G	2.182e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7009942	3L_7009942_SNP [dm3] 3L_7016842_SNP [dm6]	G	A	2.184e^-4	0.85	INTRON Mp
3R	17411510	3R_17411510_SNP [dm3] 3R_21585788_SNP [dm6]	A	T	2.191e^-4	0.85	INTRON InR
3L	9961159	3L_9961159_SNP [dm3] 3L_9968059_SNP [dm6]	G	A	2.211e^-4	0.85	UPSTREAM Nc DOWNSTREAM CG34356 INTRON CG6685	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	2585058	X_2585058_SNP [dm3] X_2691025_SNP [dm6]	G	T	2.219e^-4	0.85	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
2L	7839340	2L_7839340_SNP [dm3] 2L_7839340_SNP [dm6]	A	T	2.219e^-4	0.85	DOWNSTREAM CR43100 INTERGENIC
2R	19107740	2R_19107740_SNP [dm3] 2R_23220217_SNP [dm6]	G	C	2.223e^-4	0.85	INTERGENIC
2L	3284159	2L_3284159_SNP [dm3] 2L_3284159_SNP [dm6]	A	G	2.231e^-4	0.85	INTERGENIC
2L	16412279	2L_16412279_SNP [dm3] 2L_16412279_SNP [dm6]	A	G	2.232e^-4	0.85	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7839343	2L_7839343_DEL [dm3] 2L_7839343_DEL [dm6]	ACATG	A	2.232e^-4	0.85	DOWNSTREAM CR43100 INTERGENIC
3L	5862847	3L_5862847_SNP [dm3] 3L_5869747_SNP [dm6]	C	T	2.240e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13362356	3R_13362356_SNP [dm3] 3R_17536634_SNP [dm6]	C	A	2.243e^-4	0.85	SYNONYMOUS_CODING P5cr-2 DOWNSTREAM l_3_07882
2R	12509549	2R_12509549_SNP [dm3] 2R_16622044_SNP [dm6]	A	T	2.258e^-4	0.85	INTRON CG5065	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5390452	3L_5390452_SNP [dm3] 3L_5397352_SNP [dm6]	G	A	2.259e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_Trl
X	11200792	X_11200792_SNP [dm3] X_11306759_SNP [dm6]	A	T	2.269e^-4	0.85	INTERGENIC
X	10776044	X_10776044_SNP [dm3] X_10882011_SNP [dm6]	G	A	2.289e^-4	0.85	SYNONYMOUS_CODING Ork1
3R	17938958	3R_17938958_SNP [dm3] 3R_22113236_SNP [dm6]	A	C	2.291e^-4	0.85	UPSTREAM Ir94a INTERGENIC
3R	10599240	3R_10599240_SNP [dm3] 3R_14773518_SNP [dm6]	A	C	2.300e^-4	0.85	INTRON jvl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8818817	2L_8818817_SNP [dm3] 2L_8818817_SNP [dm6]	A	T	2.304e^-4	0.85	INTERGENIC
3L	1454051	3L_1454051_SNP [dm3] 3L_1454051_SNP [dm6]	C	T	2.306e^-4	0.85	INTRON Ptp61F
3L	16728890	3L_16728890_SNP [dm3] 3L_16735790_SNP [dm6]	G	C	2.308e^-4	0.85	INTRON CG9701
X	9796690	X_9796690_SNP [dm3] X_9902657_SNP [dm6]	C	T	2.314e^-4	0.85	INTERGENIC
3R	13111826	3R_13111826_SNP [dm3] 3R_17286104_SNP [dm6]	C	A	2.319e^-4	0.85	DOWNSTREAM CR43489 & 1 other INTERGENIC
3L	7327127	3L_7327127_SNP [dm3] 3L_7334027_SNP [dm6]	T	A	2.319e^-4	0.85	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2256974	2L_2256974_SNP [dm3] 2L_2256974_SNP [dm6]	T	A	2.334e^-4	0.85	DOWNSTREAM CR44787 INTERGENIC
3R	26550950	3R_26550950_SNP [dm3] 3R_30725228_SNP [dm6]	G	T	2.335e^-4	0.85	UPSTREAM CG1340 INTERGENIC
2R	9135781	2R_9135781_SNP [dm3] 2R_13248276_SNP [dm6]	G	T	2.337e^-4	0.85	DOWNSTREAM Mp20 & 1 other INTRON Mp20
2L	2996920	2L_2996920_SNP [dm3] 2L_2996920_SNP [dm6]	C	T	2.344e^-4	0.85	SYNONYMOUS_CODING CG3558
3L	7577815	3L_7577815_SNP [dm3] 3L_7584715_SNP [dm6]	G	A	2.345e^-4	0.85	INTRON CG14838
3L	16715370	3L_16715370_SNP [dm3] 3L_16722270_SNP [dm6]	A	G	2.345e^-4	0.85	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15628984	3L_15628984_SNP [dm3] 3L_15635884_SNP [dm6]	G	A	2.352e^-4	0.85	INTRON comm3
3R	26330400	3R_26330400_SNP [dm3] 3R_30504678_SNP [dm6]	C	T	2.354e^-4	0.85	INTRON PH4alphaSG1
3R	26330408	3R_26330408_SNP [dm3] 3R_30504686_SNP [dm6]	T	C	2.354e^-4	0.85	INTRON PH4alphaSG1
3R	15845633	3R_15845633_SNP [dm3] 3R_20019911_SNP [dm6]	G	C	2.356e^-4	0.85	INTRON CG4433
2L	17339080	2L_17339080_SNP [dm3] 2L_17339080_SNP [dm6]	G	A	2.360e^-4	0.85	INTERGENIC
X	9882537	X_9882537_SNP [dm3] X_9988504_SNP [dm6]	G	A	2.364e^-4	0.85	INTERGENIC
X	6144046	X_6144046_SNP [dm3] X_6250013_SNP [dm6]	T	C	2.372e^-4	0.85	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15002185	3R_15002185_SNP [dm3] 3R_19176463_SNP [dm6]	A	C	2.373e^-4	0.85	UPSTREAM CG14282 INTERGENIC
3L	9615063	3L_9615063_SNP [dm3] 3L_9621963_SNP [dm6]	C	T	2.374e^-4	0.85	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2992774	2L_2992774_SNP [dm3] 2L_2992774_SNP [dm6]	G	A	2.376e^-4	0.85	UPSTREAM CG3558 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	20521226	X_20521226_SNP [dm3] X_20650199_SNP [dm6]	A	G	2.383e^-4	0.85	INTERGENIC
3R	6649004	3R_6649004_SNP [dm3] 3R_10823282_SNP [dm6]	C	A	2.392e^-4	0.85	INTERGENIC
2R	19000119	2R_19000119_SNP [dm3] 2R_23112596_SNP [dm6]	A	G	2.395e^-4	0.85	DOWNSTREAM CR44782 INTERGENIC
X	12635120	X_12635120_DEL [dm3] X_12741087_DEL [dm6]	AATA	A	2.398e^-4	0.85	INTRON Smr
2L	1472421	2L_1472421_SNP [dm3] 2L_1472421_SNP [dm6]	T	G	2.415e^-4	0.85	INTERGENIC
3R	26276601	3R_26276601_SNP [dm3] 3R_30450879_SNP [dm6]	T	A	2.418e^-4	0.85	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14508315	2R_14508315_SNP [dm3] 2R_18620810_SNP [dm6]	A	T	2.425e^-4	0.85	UPSTREAM CG5335 INTRON Atg7
2R	20217018	2R_20217018_SNP [dm3] 2R_24329495_SNP [dm6]	G	A	2.427e^-4	0.85	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
2L	2992801	2L_2992801_SNP [dm3] 2L_2992801_SNP [dm6]	G	T	2.433e^-4	0.85	UPSTREAM CG3558 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11126757	3L_11126757_SNP [dm3] 3L_11133657_SNP [dm6]	T	C	2.442e^-4	0.85	INTRON CG42575	TF binding site mE1_TFBS_cad
3L	5200184	3L_5200184_SNP [dm3] 3L_5207084_SNP [dm6]	G	C	2.442e^-4	0.85	INTRON shep
2L	7850966	2L_7850966_SNP [dm3] 2L_7850966_SNP [dm6]	A	G	2.456e^-4	0.85	INTRON CG14535
X	11200794	X_11200794_SNP [dm3] X_11306761_SNP [dm6]	T	G	2.456e^-4	0.85	INTERGENIC
2R	17380625	2R_17380625_SNP [dm3] 2R_21493120_SNP [dm6]	G	A	2.459e^-4	0.85	INTRON Fkbp14
3R	13110431	3R_13110431_SNP [dm3] 3R_17284709_SNP [dm6]	T	A	2.459e^-4	0.85	NON_SYNONYMOUS_CODING CG31419 DOWNSTREAM CG31418
2L	21258859	2L_21258859_DEL [dm3] 2L_21258859_DEL [dm6]	TA	T	2.464e^-4	0.85	UTR_3_PRIME Hr39 DOWNSTREAM Hr39	TF binding site BDTNP1_TFBS_dl
2R	10848851	2R_10848851_INS [dm3] 2R_14961346_INS [dm6]	C	CG	2.466e^-4	0.85	INTRON aPKC	TF binding site BDTNP1_TFBS_dl
2R	13540622	2R_13540622_SNP [dm3] 2R_17653117_SNP [dm6]	T	C	2.469e^-4	0.85	INTRON CCHa1-R
3L	5868850	3L_5868850_SNP [dm3] 3L_5875750_SNP [dm6]	C	G	2.471e^-4	0.85	DOWNSTREAM CG18586 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4520127	3L_4520127_SNP [dm3] 3L_4520127_SNP [dm6]	C	T	2.481e^-4	0.85	INTRON Tie
3R	15001780	3R_15001780_SNP [dm3] 3R_19176058_SNP [dm6]	T	C	2.486e^-4	0.85	UPSTREAM CG14282 INTERGENIC
2R	17027512	2R_17027512_SNP [dm3] 2R_21140007_SNP [dm6]	A	G	2.494e^-4	0.85	UPSTREAM Magi INTRON Magi
2R	17694012	2R_17694012_SNP [dm3] 2R_21806507_SNP [dm6]	A	G	2.495e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	18383519	2R_18383519_SNP [dm3] 2R_22496014_SNP [dm6]	A	T	2.513e^-4	0.85	UTR_3_PRIME px DOWNSTREAM px
3R	17972268	3R_17972268_SNP [dm3] 3R_22146546_SNP [dm6]	G	T	2.518e^-4	0.85	INTRON SKIP	TF binding site mE1_TFBS_cad
3L	16662059	3L_16662059_SNP [dm3] 3L_16668959_SNP [dm6]	T	A	2.522e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	12983948	2L_12983948_SNP [dm3] 2L_12983948_SNP [dm6]	G	A	2.525e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3123552	X_3123552_SNP [dm3] X_3229519_SNP [dm6]	T	C	2.530e^-4	0.85	INTRON dnc
2L	19886181	2L_19886181_SNP [dm3] 2L_19886181_SNP [dm6]	T	A	2.532e^-4	0.85	INTRON sick
3L	14010330	3L_14010330_SNP [dm3] 3L_14017230_SNP [dm6]	G	T	2.537e^-4	0.85	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15479091	2L_15479091_SNP [dm3] 2L_15479091_SNP [dm6]	C	T	2.544e^-4	0.85	UPSTREAM sna INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10850954	2R_10850954_SNP [dm3] 2R_14963449_SNP [dm6]	T	A	2.550e^-4	0.85	UTR_5_PRIME ckn UPSTREAM aPKC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16766763	3L_16766763_SNP [dm3] 3L_16773663_SNP [dm6]	C	T	2.552e^-4	0.85	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16766764	3L_16766764_SNP [dm3] 3L_16773664_SNP [dm6]	A	G	2.552e^-4	0.85	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	9880849	3R_9880849_SNP [dm3] 3R_14055127_SNP [dm6]	C	T	2.557e^-4	0.85	INTERGENIC
X	3090510	X_3090510_SNP [dm3] X_3196477_SNP [dm6]	A	G	2.568e^-4	0.85	INTRON dnc
2L	21258500	2L_21258500_SNP [dm3] 2L_21258500_SNP [dm6]	T	C	2.570e^-4	0.85	UTR_3_PRIME Hr39 DOWNSTREAM Hr39	TF binding site BDTNP1_TFBS_dl
2L	19179148	2L_19179148_SNP [dm3] 2L_19179148_SNP [dm6]	G	A	2.570e^-4	0.85	UTR_3_PRIME brat DOWNSTREAM CG17568
2L	4897987	2L_4897987_SNP [dm3] 2L_4897987_SNP [dm6]	C	G	2.575e^-4	0.85	INTRON CG3036
2R	18383416	2R_18383416_SNP [dm3] 2R_22495911_SNP [dm6]	T	C	2.579e^-4	0.85	UTR_3_PRIME px DOWNSTREAM px
X	2584722	X_2584722_SNP [dm3] X_2690689_SNP [dm6]	A	G	2.585e^-4	0.85	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
2L	3758486	2L_3758486_SNP [dm3] 2L_3758486_SNP [dm6]	A	C	2.590e^-4	0.85	INTRON CG43707
3R	16360288	3R_16360288_SNP [dm3] 3R_20534566_SNP [dm6]	T	A	2.591e^-4	0.85	UPSTREAM MtnD DOWNSTREAM Stat92E INTRON MtnE
2R	12442800	2R_12442800_SNP [dm3] 2R_16555295_SNP [dm6]	G	A	2.595e^-4	0.85	INTRON Syn2
X	16926199	X_16926199_SNP [dm3] X_17032166_SNP [dm6]	A	T	2.598e^-4	0.85	INTRON CG45002
2R	18784070	2R_18784070_SNP [dm3] 2R_22896547_SNP [dm6]	A	C	2.599e^-4	0.85	UTR_5_PRIME nahoda DOWNSTREAM CG3700 INTRON nahoda	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16926445	X_16926445_SNP [dm3] X_17032412_SNP [dm6]	T	C	2.606e^-4	0.85	INTRON CG45002
2L	12146058	2L_12146058_SNP [dm3] 2L_12146058_SNP [dm6]	A	C	2.616e^-4	0.85	INTRON CG31760
X	2524697	X_2524697_SNP [dm3] X_2630664_SNP [dm6]	C	T	2.616e^-4	0.85	SYNONYMOUS_CODING PI4KIIIalpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18932535	3R_18932535_SNP [dm3] 3R_23106813_SNP [dm6]	A	G	2.617e^-4	0.85	INTRON CG13830
2R	14270372	2R_14270372_SNP [dm3] 2R_18382867_SNP [dm6]	A	G	2.619e^-4	0.85	SYNONYMOUS_CODING IM23
2L	7862147	2L_7862147_SNP [dm3] 2L_7862147_SNP [dm6]	C	T	2.620e^-4	0.85	INTERGENIC
X	15169629	X_15169629_SNP [dm3] X_15275596_SNP [dm6]	G	T	2.621e^-4	0.85	INTERGENIC
2L	19594750	2L_19594750_SNP [dm3] 2L_19594750_SNP [dm6]	C	A	2.621e^-4	0.85	INTRON Lar
3R	26318085	3R_26318085_SNP [dm3] 3R_30492363_SNP [dm6]	A	G	2.628e^-4	0.85	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
3R	14623952	3R_14623952_SNP [dm3] 3R_18798230_SNP [dm6]	A	G	2.629e^-4	0.85	INTERGENIC
3R	22106946	3R_22106946_SNP [dm3] 3R_26281224_SNP [dm6]	C	T	2.629e^-4	0.85	INTERGENIC
2L	3056485	2L_3056485_SNP [dm3] 2L_3056485_SNP [dm6]	G	C	2.629e^-4	0.85	UPSTREAM CG3523 DOWNSTREAM v_2_k05816 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17942138	2R_17942138_SNP [dm3] 2R_22054633_SNP [dm6]	G	T	2.630e^-4	0.85	INTERGENIC
3R	22129909	3R_22129909_SNP [dm3] 3R_26304187_SNP [dm6]	G	T	2.637e^-4	0.85	INTERGENIC
2L	21258204	2L_21258204_SNP [dm3] 2L_21258204_SNP [dm6]	G	A	2.643e^-4	0.85	UTR_3_PRIME Hr39 DOWNSTREAM Hr39	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15673536	3R_15673536_SNP [dm3] 3R_19847814_SNP [dm6]	G	T	2.648e^-4	0.85	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1338290	2L_1338290_SNP [dm3] 2L_1338290_SNP [dm6]	A	G	2.649e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_cad
2L	21260277	2L_21260277_SNP [dm3] 2L_21260277_SNP [dm6]	T	G	2.662e^-4	0.85	UPSTREAM l_2_k14505 DOWNSTREAM Hr39 INTERGENIC
2L	19767002	2L_19767002_SNP [dm3] 2L_19767002_SNP [dm6]	T	A	2.664e^-4	0.85	INTRON bsh	TF binding site mE1_TFBS_cad
3R	17399794	3R_17399794_SNP [dm3] 3R_21574072_SNP [dm6]	T	C	2.667e^-4	0.85	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4786115	2L_4786115_SNP [dm3] 2L_4786115_SNP [dm6]	G	A	2.673e^-4	0.85	INTRON CG15630
2R	18788623	2R_18788623_SNP [dm3] 2R_22901100_SNP [dm6]	T	C	2.677e^-4	0.85	INTRON nahoda
3L	5670176	3L_5670176_SNP [dm3] 3L_5677076_SNP [dm6]	C	T	2.683e^-4	0.85	INTRON sif	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9796646	X_9796646_SNP [dm3] X_9902613_SNP [dm6]	A	T	2.684e^-4	0.85	INTERGENIC
3R	16442800	3R_16442800_SNP [dm3] 3R_20617078_SNP [dm6]	A	T	2.690e^-4	0.85	UPSTREAM CG5466 & 1 other INTERGENIC
2R	9582511	2R_9582511_SNP [dm3] 2R_13695006_SNP [dm6]	A	G	2.690e^-4	0.85	INTRON fas
X	19369923	X_19369923_SNP [dm3] X_19475890_SNP [dm6]	G	C	2.692e^-4	0.85	UTR_3_PRIME CG12200 INTRON CG32533
2L	16331670	2L_16331670_SNP [dm3] 2L_16331670_SNP [dm6]	G	A	2.693e^-4	0.85	SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	19751648	3R_19751648_SNP [dm3] 3R_23925926_SNP [dm6]	G	A	2.697e^-4	0.85	SYNONYMOUS_CODING Ndc1 DOWNSTREAM CG13601	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17036259	3L_17036259_SNP [dm3] 3L_17043159_SNP [dm6]	C	T	2.718e^-4	0.85	NON_SYNONYMOUS_CODING Papst2 UPSTREAM scaf6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	14094995	2L_14094995_SNP [dm3] 2L_14094995_SNP [dm6]	T	A	2.735e^-4	0.85	DOWNSTREAM nAChRalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	19623318	3R_19623318_SNP [dm3] 3R_23797596_SNP [dm6]	T	C	2.740e^-4	0.85	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	11110723	X_11110723_DEL [dm3] X_11216690_DEL [dm6]	TA	T	2.740e^-4	0.85	INTERGENIC
3R	21139209	3R_21139209_SNP [dm3] 3R_25313487_SNP [dm6]	G	A	2.740e^-4	0.85	INTRON CG31087
3L	6379822	3L_6379822_SNP [dm3] 3L_6386722_SNP [dm6]	A	T	2.742e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14026270	3R_14026270_SNP [dm3] 3R_18200548_SNP [dm6]	C	A	2.745e^-4	0.85	UPSTREAM Ssdp INTRON CG7985	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_jumu
2L	4596774	2L_4596774_SNP [dm3] 2L_4596774_SNP [dm6]	A	C	2.747e^-4	0.85	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Kr
X	2249278	X_2249278_SNP [dm3] X_2355245_SNP [dm6]	A	C	2.749e^-4	0.85	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3R	17404070	3R_17404070_SNP [dm3] 3R_21578348_SNP [dm6]	A	G	2.753e^-4	0.85	SYNONYMOUS_CODING InR
3R	10414082	3R_10414082_SNP [dm3] 3R_14588360_SNP [dm6]	A	G	2.758e^-4	0.85	INTRON stumps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18754451	2L_18754451_SNP [dm3] 2L_18754451_SNP [dm6]	T	A	2.760e^-4	0.85	INTERGENIC
3R	1764120	3R_1764120_SNP [dm3] 3R_5938398_SNP [dm6]	G	A	2.779e^-4	0.85	INTRON CG34113
2R	11612187	2R_11612187_SNP [dm3] 2R_15724682_SNP [dm6]	C	T	2.780e^-4	0.85	INTERGENIC
2L	19886216	2L_19886216_SNP [dm3] 2L_19886216_SNP [dm6]	A	T	2.784e^-4	0.85	INTRON sick
2L	10724671	2L_10724671_SNP [dm3] 2L_10724671_SNP [dm6]	G	A	2.785e^-4	0.85	UPSTREAM CG6431 INTRON CG6431
2L	13249778	2L_13249778_SNP [dm3] 2L_13249778_SNP [dm6]	A	T	2.795e^-4	0.85	INTRON CG16820
X	5989374	X_5989374_SNP [dm3] X_6095341_SNP [dm6]	G	C	2.798e^-4	0.85	INTRON Nep1
3R	16207631	3R_16207631_INS [dm3] 3R_20381909_INS [dm6]	T	TCAA	2.803e^-4	0.85	INTRON Gfrl
2R	1701598	2R_1701598_SNP [dm3] 2R_5814093_SNP [dm6]	C	T	2.805e^-4	0.85	INTRON dpr12	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	9829057	X_9829057_SNP [dm3] X_9935024_SNP [dm6]	A	T	2.809e^-4	0.85	INTERGENIC
X	1049658	X_1049658_SNP [dm3] X_1155625_SNP [dm6]	G	A	2.810e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	7491380	X_7491380_SNP [dm3] X_7597347_SNP [dm6]	A	G	2.810e^-4	0.85	INTERGENIC	regulatory region REDfly_CRMs
3L	17131730	3L_17131730_SNP [dm3] 3L_17138630_SNP [dm6]	G	T	2.813e^-4	0.85	INTRON Rbp6
2R	18193203	2R_18193203_SNP [dm3] 2R_22305698_SNP [dm6]	T	C	2.816e^-4	0.85	INTRON wdp
2R	16774942	2R_16774942_SNP [dm3] 2R_20887437_SNP [dm6]	C	T	2.817e^-4	0.85	INTRON otp
X	2934751	X_2934751_INS [dm3] X_3040718_INS [dm6]	G	GCATCCCAG	2.829e^-4	0.85	INTRON kirre
2L	19766982	2L_19766982_SNP [dm3] 2L_19766982_SNP [dm6]	A	G	2.833e^-4	0.85	INTRON bsh	TF binding site mE1_TFBS_cad
X	16007883	X_16007883_SNP [dm3] X_16113850_SNP [dm6]	T	C	2.836e^-4	0.85	INTERGENIC
2L	5209165	2L_5209165_SNP [dm3] 2L_5209165_SNP [dm6]	T	A	2.849e^-4	0.85	SYNONYMOUS_CODING Cyp28d2	TF binding site mE1_TFBS_cad
2R	18195774	2R_18195774_SNP [dm3] 2R_22308269_SNP [dm6]	A	T	2.861e^-4	0.85	INTRON wdp
2R	20094743	2R_20094743_SNP [dm3] 2R_24207220_SNP [dm6]	G	C	2.862e^-4	0.85	UPSTREAM CG11406 INTRON CG11406
3L	11905285	3L_11905285_SNP [dm3] 3L_11912185_SNP [dm6]	C	T	2.865e^-4	0.85	INTRON CG44837
3L	5486157	3L_5486157_SNP [dm3] 3L_5493057_SNP [dm6]	C	T	2.866e^-4	0.85	DOWNSTREAM CR44520 INTERGENIC
X	5989440	X_5989440_SNP [dm3] X_6095407_SNP [dm6]	A	T	2.873e^-4	0.85	INTRON Nep1
3L	6513944	3L_6513944_SNP [dm3] 3L_6520844_SNP [dm6]	A	C	2.880e^-4	0.85	INTRON sfl
2R	15984975	2R_15984975_SNP [dm3] 2R_20097470_SNP [dm6]	A	G	2.883e^-4	0.85	INTERGENIC
2L	19143860	2L_19143860_SNP [dm3] 2L_19143860_SNP [dm6]	A	T	2.884e^-4	0.85	INTRON brat
2L	7270197	2L_7270197_SNP [dm3] 2L_7270197_SNP [dm6]	A	G	2.885e^-4	0.85	INTRON Wnt4
3L	720515	3L_720515_SNP [dm3] 3L_720515_SNP [dm6]	T	C	2.888e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19767009	2L_19767009_SNP [dm3] 2L_19767009_SNP [dm6]	C	T	2.890e^-4	0.85	INTRON bsh	TF binding site mE1_TFBS_cad
X	14150207	X_14150207_SNP [dm3] X_14256174_SNP [dm6]	A	G	2.907e^-4	0.85	NON_SYNONYMOUS_CODING mud DOWNSTREAM mud INTRON mud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2524238	X_2524238_SNP [dm3] X_2630205_SNP [dm6]	A	T	2.911e^-4	0.85	SYNONYMOUS_CODING PI4KIIIalpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17114031	2R_17114031_SNP [dm3] 2R_21226526_SNP [dm6]	G	T	2.913e^-4	0.85	INTRON ASPP
2R	7691235	2R_7691235_SNP [dm3] 2R_11803730_SNP [dm6]	C	T	2.916e^-4	0.85	INTRON ths	TF binding site mE1_TFBS_cad
3L	17096536	3L_17096536_SNP [dm3] 3L_17103436_SNP [dm6]	G	T	2.919e^-4	0.85	INTRON Rbp6
3R	21139196	3R_21139196_SNP [dm3] 3R_25313474_SNP [dm6]	T	C	2.920e^-4	0.85	INTRON CG31087
3R	20962834	3R_20962834_SNP [dm3] 3R_25137112_SNP [dm6]	A	C	2.921e^-4	0.85	UPSTREAM danr DOWNSTREAM Bili INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	9485689	X_9485689_SNP [dm3] X_9591656_SNP [dm6]	T	C	2.925e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_inv
X	15169710	X_15169710_DEL [dm3] X_15275677_DEL [dm6]	TAAAAATGGT	C	2.932e^-4	0.85	INTERGENIC
3R	16360285	3R_16360285_SNP [dm3] 3R_20534563_SNP [dm6]	T	A	2.941e^-4	0.85	UPSTREAM MtnD DOWNSTREAM Stat92E INTRON MtnE
2L	2992791	2L_2992791_SNP [dm3] 2L_2992791_SNP [dm6]	T	G	2.943e^-4	0.85	UPSTREAM CG3558 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9588212	3R_9588212_SNP [dm3] 3R_13762490_SNP [dm6]	G	T	2.946e^-4	0.85	DOWNSTREAM CG34383 INTRON CG34383
3L	23024788	3L_23024788_SNP [dm3] 3L_23031688_SNP [dm6]	T	C	2.947e^-4	0.85	SYNONYMOUS_CODING nrm INTRON nrm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19556387	2R_19556387_SNP [dm3] 2R_23668864_SNP [dm6]	G	A	2.953e^-4	0.85	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8004193	2L_8004193_SNP [dm3] 2L_8004193_SNP [dm6]	A	G	2.953e^-4	0.85	UTR_5_PRIME Wwox DOWNSTREAM Spn28Dc
2L	7852871	2L_7852871_SNP [dm3] 2L_7852871_SNP [dm6]	G	A	2.956e^-4	0.85	INTRON CG14535
3R	22279661	3R_22279661_SNP [dm3] 3R_26453939_SNP [dm6]	G	A	2.959e^-4	0.85	UPSTREAM CG43117 INTRON CG5447
3R	19459614	3R_19459614_SNP [dm3] 3R_23633892_SNP [dm6]	T	C	2.967e^-4	0.85	INTRON CG31145	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5989284	X_5989284_SNP [dm3] X_6095251_SNP [dm6]	G	C	2.971e^-4	0.85	INTRON Nep1
2R	19556293	2R_19556293_SNP [dm3] 2R_23668770_SNP [dm6]	C	G	2.973e^-4	0.85	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8861719	2R_8861719_SNP [dm3] 2R_12974214_SNP [dm6]	C	A	2.977e^-4	0.85	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8861722	2R_8861722_SNP [dm3] 2R_12974217_SNP [dm6]	A	C	2.977e^-4	0.85	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10046658	3L_10046658_SNP [dm3] 3L_10053558_SNP [dm6]	T	G	2.979e^-4	0.85	INTRON dpr6
X	8715228	X_8715228_SNP [dm3] X_8821195_SNP [dm6]	C	G	2.996e^-4	0.85	INTERGENIC
2L	10555179	2L_10555179_SNP [dm3] 2L_10555179_SNP [dm6]	T	C	2.997e^-4	0.85	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4059733	3R_4059733_DEL [dm3] 3R_8234011_DEL [dm6]	AA	A	2.999e^-4	0.85	UPSTREAM CR45549 INTRON DNApol-iota	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	18121646	2R_18121646_SNP [dm3] 2R_22234141_SNP [dm6]	G	C	3.000e^-4	0.85	INTERGENIC
3L	16808386	3L_16808386_SNP [dm3] 3L_16815286_SNP [dm6]	T	C	3.004e^-4	0.85	INTRON nudC & 1 other
3L	21248020	3L_21248020_SNP [dm3] 3L_21254920_SNP [dm6]	G	T	3.010e^-4	0.85	INTRON Eip78C
3R	13106455	3R_13106455_SNP [dm3] 3R_17280733_SNP [dm6]	A	G	3.010e^-4	0.85	INTERGENIC
3R	6372864	3R_6372864_SNP [dm3] 3R_10547142_SNP [dm6]	C	T	3.014e^-4	0.85	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5878519	3L_5878519_SNP [dm3] 3L_5885419_SNP [dm6]	G	A	3.014e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	15169603	X_15169603_SNP [dm3] X_15275570_SNP [dm6]	C	T	3.016e^-4	0.85	INTERGENIC
X	4676192	X_4676192_SNP [dm3] X_4782159_SNP [dm6]	A	G	3.016e^-4	0.85	DOWNSTREAM CG15471 INTERGENIC
3L	18951474	3L_18951474_SNP [dm3] 3L_18958374_SNP [dm6]	T	G	3.018e^-4	0.85	INTERGENIC
3R	16355001	3R_16355001_SNP [dm3] 3R_20529279_SNP [dm6]	C	A	3.023e^-4	0.85	INTERGENIC
2L	8078176	2L_8078176_SNP [dm3] 2L_8078176_SNP [dm6]	A	G	3.027e^-4	0.85	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
3L	17007086	3L_17007086_SNP [dm3] 3L_17013986_SNP [dm6]	T	C	3.030e^-4	0.85	SPLICE_SITE_REGION CG6664 INTRON CG6664	TF binding site mE1_TFBS_chinmo
2L	2996151	2L_2996151_SNP [dm3] 2L_2996151_SNP [dm6]	C	T	3.034e^-4	0.85	NON_SYNONYMOUS_CODING CG3558	TF binding site mE1_TFBS_chinmo
3L	10835694	3L_10835694_SNP [dm3] 3L_10842594_SNP [dm6]	T	C	3.040e^-4	0.85	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	14506412	2R_14506412_SNP [dm3] 2R_18618907_SNP [dm6]	G	C	3.040e^-4	0.85	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19690847	2R_19690847_SNP [dm3] 2R_23803324_SNP [dm6]	C	A	3.044e^-4	0.85	DOWNSTREAM CG30177 & 1 other INTERGENIC
2R	17670410	2R_17670410_SNP [dm3] 2R_21782905_SNP [dm6]	A	T	3.045e^-4	0.85	INTERGENIC
2L	12208227	2L_12208227_SNP [dm3] 2L_12208227_SNP [dm6]	T	G	3.046e^-4	0.85	SYNONYMOUS_CODING CG31759 INTRON aret
2L	21258856	2L_21258856_SNP [dm3] 2L_21258856_SNP [dm6]	A	G	3.055e^-4	0.85	UTR_3_PRIME Hr39 DOWNSTREAM Hr39	TF binding site BDTNP1_TFBS_dl
3L	16647000	3L_16647000_SNP [dm3] 3L_16653900_SNP [dm6]	C	T	3.058e^-4	0.85	INTRON Baldspot EXON snRNA:U12:73B
3L	6514000	3L_6514000_SNP [dm3] 3L_6520900_SNP [dm6]	G	T	3.070e^-4	0.85	INTRON sfl
2L	10497668	2L_10497668_SNP [dm3] 2L_10497668_SNP [dm6]	T	C	3.072e^-4	0.85	INTRON Myo31DF
2L	3056539	2L_3056539_SNP [dm3] 2L_3056539_SNP [dm6]	A	G	3.074e^-4	0.85	UPSTREAM CG3523 DOWNSTREAM v_2_k05816 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8162530	X_8162530_SNP [dm3] X_8268497_SNP [dm6]	G	T	3.074e^-4	0.85	INTRON CG1632	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2992831	2L_2992831_SNP [dm3] 2L_2992831_SNP [dm6]	C	T	3.081e^-4	0.85	UPSTREAM CG3558 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9586225	2R_9586225_SNP [dm3] 2R_13698720_SNP [dm6]	C	A	3.107e^-4	0.85	INTRON fas
3R	11768169	3R_11768169_SNP [dm3] 3R_15942447_SNP [dm6]	C	T	3.114e^-4	0.85	INTRON Sap47
X	5989474	X_5989474_SNP [dm3] X_6095441_SNP [dm6]	T	C	3.115e^-4	0.85	INTRON Nep1
2L	8078158	2L_8078158_SNP [dm3] 2L_8078158_SNP [dm6]	G	T	3.116e^-4	0.85	SYNONYMOUS_CODING Mcr	TF binding site mE1_TFBS_sens
2L	12267950	2L_12267950_DEL [dm3] 2L_12267950_DEL [dm6]	AAGA	A	3.123e^-4	0.85	INTRON aret
2L	1704178	2L_1704178_SNP [dm3] 2L_1704178_SNP [dm6]	C	T	3.134e^-4	0.85	UTR_3_PRIME chinmo UPSTREAM cpb
2R	12509005	2R_12509005_SNP [dm3] 2R_16621500_SNP [dm6]	A	C	3.139e^-4	0.85	SPLICE_SITE_REGION CG5065 INTRON CG5065	TF binding site mE1_TFBS_cad
X	11906019	X_11906019_SNP [dm3] X_12011986_SNP [dm6]	G	T	3.139e^-4	0.85	UPSTREAM regucalcin INTRON CG1492	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12424730	2L_12424730_SNP [dm3] 2L_12424730_SNP [dm6]	A	G	3.141e^-4	0.85	UPSTREAM CG6405 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10092390	2L_10092390_SNP [dm3] 2L_10092390_SNP [dm6]	T	C	3.149e^-4	0.85	UPSTREAM CG13133 INTRON CG44153
2L	3368760	2L_3368760_SNP [dm3] 2L_3368760_SNP [dm6]	G	T	3.152e^-4	0.85	INTRON CG34394
2L	6259168	2L_6259168_SNP [dm3] 2L_6259168_SNP [dm6]	T	A	3.160e^-4	0.85	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15969924	3R_15969924_SNP [dm3] 3R_20144202_SNP [dm6]	A	G	3.173e^-4	0.85	INTERGENIC
2L	2991130	2L_2991130_SNP [dm3] 2L_2991130_SNP [dm6]	T	C	3.175e^-4	0.85	SYNONYMOUS_CODING okr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14795271	3R_14795271_SNP [dm3] 3R_18969549_SNP [dm6]	T	C	3.181e^-4	0.85	SYNONYMOUS_CODING CG42613 UTR_5_PRIME CG42613 UTR_3_PRIME CG43732
2L	2992872	2L_2992872_SNP [dm3] 2L_2992872_SNP [dm6]	A	C	3.182e^-4	0.85	UTR_5_PRIME CG3558 UPSTREAM CG3558 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20152372	2R_20152372_SNP [dm3] 2R_24264849_SNP [dm6]	G	T	3.184e^-4	0.85	UTR_3_PRIME CG3376 DOWNSTREAM CG3376	TF binding site BDTNP1_TFBS_dl
3R	17410022	3R_17410022_SNP [dm3] 3R_21584300_SNP [dm6]	G	A	3.190e^-4	0.85	INTRON InR
2R	5625598	2R_5625598_SNP [dm3] 2R_9738093_SNP [dm6]	C	T	3.198e^-4	0.85	INTRON sqa
3L	17424502	3L_17424502_SNP [dm3] 3L_17431402_SNP [dm6]	A	T	3.208e^-4	0.85	UTR_5_PRIME CG32174 UTR_3_PRIME frc DOWNSTREAM frc INTRON CG32174
2L	4206020	2L_4206020_SNP [dm3] 2L_4206020_SNP [dm6]	T	A	3.208e^-4	0.85	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	13873578	X_13873578_SNP [dm3] X_13979545_SNP [dm6]	G	A	3.222e^-4	0.85	INTRON mamo
3R	25719350	3R_25719350_SNP [dm3] 3R_29893628_SNP [dm6]	G	C	3.227e^-4	0.85	INTRON CG31038
X	8664952	X_8664952_SNP [dm3] X_8770919_SNP [dm6]	C	G	3.228e^-4	0.85	INTRON Lim1	TF binding site BDTNP1_TFBS_twi
2R	8853369	2R_8853369_SNP [dm3] 2R_12965864_SNP [dm6]	T	C	3.229e^-4	0.85	DOWNSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9879793	3R_9879793_SNP [dm3] 3R_14054071_SNP [dm6]	C	A	3.232e^-4	0.85	INTERGENIC
2L	8818783	2L_8818783_SNP [dm3] 2L_8818783_SNP [dm6]	A	G	3.233e^-4	0.85	INTERGENIC
3R	1630047	3R_1630047_SNP [dm3] 3R_5804325_SNP [dm6]	G	A	3.235e^-4	0.85	INTRON CG11000
X	10775796	X_10775796_SNP [dm3] X_10881763_SNP [dm6]	C	A	3.235e^-4	0.85	SYNONYMOUS_CODING Ork1
3R	10371373	3R_10371373_SNP [dm3] 3R_14545651_SNP [dm6]	G	C	3.239e^-4	0.85	INTRON Pde6
3R	21139352	3R_21139352_SNP [dm3] 3R_25313630_SNP [dm6]	T	C	3.242e^-4	0.85	DOWNSTREAM CG10559 INTRON CG31087
2L	13542919	2L_13542919_SNP [dm3] 2L_13542919_SNP [dm6]	G	A	3.254e^-4	0.85	NON_SYNONYMOUS_CODING CG16853 UPSTREAM CG9263 INTRON B4	TF binding site mE1_TFBS_sens
3R	26550962	3R_26550962_SNP [dm3] 3R_30725240_SNP [dm6]	T	A	3.259e^-4	0.85	UPSTREAM CG1340 INTERGENIC
X	8338088	X_8338088_SNP [dm3] X_8444055_SNP [dm6]	C	T	3.278e^-4	0.85	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4478607	2L_4478607_SNP [dm3] 2L_4478607_SNP [dm6]	A	C	3.278e^-4	0.85	UTR_3_PRIME dp DOWNSTREAM dp
X	7676281	X_7676281_SNP [dm3] X_7782248_SNP [dm6]	T	C	3.281e^-4	0.85	INTERGENIC
3L	11679054	3L_11679054_SNP [dm3] 3L_11685954_SNP [dm6]	C	T	3.285e^-4	0.85	INTRON Sug
2L	1257106	2L_1257106_SNP [dm3] 2L_1257106_SNP [dm6]	G	A	3.288e^-4	0.85	INTRON robo3
3L	5861465	3L_5861465_SNP [dm3] 3L_5868365_SNP [dm6]	T	A	3.288e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5861920	3L_5861920_SNP [dm3] 3L_5868820_SNP [dm6]	C	G	3.288e^-4	0.85	INTERGENIC
X	15108324	X_15108324_SNP [dm3] X_15214291_SNP [dm6]	C	T	3.290e^-4	0.85	INTERGENIC
3L	10560982	3L_10560982_SNP [dm3] 3L_10567882_SNP [dm6]	A	G	3.291e^-4	0.85	INTRON A2bp1
2R	12807060	2R_12807060_SNP [dm3] 2R_16919555_SNP [dm6]	T	C	3.294e^-4	0.85	INTERGENIC
2R	20082508	2R_20082508_SNP [dm3] 2R_24194985_SNP [dm6]	G	A	3.298e^-4	0.85	UPSTREAM cN-IIIB INTRON ocm	TF binding site mE1_TFBS_Ubx
2R	20415087	2R_20415087_SNP [dm3] 2R_24527564_SNP [dm6]	A	C	3.298e^-4	0.85	NON_SYNONYMOUS_CODING Brca2
2R	18701592	2R_18701592_SNP [dm3] 2R_22814087_SNP [dm6]	T	C	3.303e^-4	0.85	INTRON stl	TF binding site mE1_TFBS_chinmo
2L	14999425	2L_14999425_SNP [dm3] 2L_14999425_SNP [dm6]	A	T	3.303e^-4	0.85	INTERGENIC
3L	16691947	3L_16691947_SNP [dm3] 3L_16698847_SNP [dm6]	A	T	3.306e^-4	0.85	DOWNSTREAM CR45179 INTRON Lasp & 1 other
3R	17938954	3R_17938954_SNP [dm3] 3R_22113232_SNP [dm6]	A	G	3.308e^-4	0.85	UPSTREAM Ir94a INTERGENIC
2R	19107739	2R_19107739_SNP [dm3] 2R_23220216_SNP [dm6]	G	A	3.311e^-4	0.85	INTERGENIC
X	5166471	X_5166471_SNP [dm3] X_5272438_SNP [dm6]	T	G	3.315e^-4	0.85	INTERGENIC
3R	22106984	3R_22106984_SNP [dm3] 3R_26281262_SNP [dm6]	A	T	3.316e^-4	0.85	INTERGENIC
3L	11083689	3L_11083689_SNP [dm3] 3L_11090589_SNP [dm6]	T	C	3.330e^-4	0.85	INTRON JIL-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17938955	3R_17938955_SNP [dm3] 3R_22113233_SNP [dm6]	C	T	3.334e^-4	0.85	UPSTREAM Ir94a INTERGENIC
X	5989289	X_5989289_DEL [dm3] X_6095256_DEL [dm6]	AAAAGGTGAC	A	3.338e^-4	0.85	INTRON Nep1
3R	13145435	3R_13145435_SNP [dm3] 3R_17319713_SNP [dm6]	T	A	3.341e^-4	0.85	DOWNSTREAM beat-IIa INTERGENIC
3R	14986507	3R_14986507_SNP [dm3] 3R_19160785_SNP [dm6]	T	A	3.345e^-4	0.85	SYNONYMOUS_CODING CG42358 UPSTREAM CG11779 DOWNSTREAM nos & 1 other
3R	17938945	3R_17938945_SNP [dm3] 3R_22113223_SNP [dm6]	C	A	3.348e^-4	0.85	UPSTREAM Ir94a INTERGENIC
3L	16875098	3L_16875098_SNP [dm3] 3L_16881998_SNP [dm6]	T	G	3.350e^-4	0.85	INTRON Lmpt
3L	16875099	3L_16875099_SNP [dm3] 3L_16881999_SNP [dm6]	T	A	3.350e^-4	0.85	INTRON Lmpt
2L	12063186	2L_12063186_SNP [dm3] 2L_12063186_SNP [dm6]	T	G	3.351e^-4	0.85	UPSTREAM Rab3-GAP DOWNSTREAM CG14946 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	2249372	X_2249372_SNP [dm3] X_2355339_SNP [dm6]	A	G	3.352e^-4	0.85	UPSTREAM ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
3L	14766229	3L_14766229_SNP [dm3] 3L_14773129_SNP [dm6]	A	G	3.353e^-4	0.85	SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11552418	2L_11552418_SNP [dm3] 2L_11552418_SNP [dm6]	G	A	3.353e^-4	0.85	INTERGENIC
2L	3239149	2L_3239149_SNP [dm3] 2L_3239149_SNP [dm6]	G	C	3.356e^-4	0.85	INTERGENIC
2R	11139521	2R_11139521_SNP [dm3] 2R_15252016_SNP [dm6]	T	G	3.359e^-4	0.85	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	13363179	3R_13363179_SNP [dm3] 3R_17537457_SNP [dm6]	T	C	3.365e^-4	0.85	SYNONYMOUS_CODING l_3_07882 DOWNSTREAM P5cr-2
2L	7869545	2L_7869545_SNP [dm3] 2L_7869545_SNP [dm6]	G	T	3.381e^-4	0.85	INTRON Proc
2L	7853585	2L_7853585_SNP [dm3] 2L_7853585_SNP [dm6]	A	G	3.385e^-4	0.85	INTRON CG14535	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15575851	3R_15575851_SNP [dm3] 3R_19750129_SNP [dm6]	A	G	3.386e^-4	0.85	INTRON GluClalpha
2L	8004199	2L_8004199_SNP [dm3] 2L_8004199_SNP [dm6]	T	G	3.389e^-4	0.85	UTR_5_PRIME Wwox DOWNSTREAM Spn28Dc
2L	8004202	2L_8004202_SNP [dm3] 2L_8004202_SNP [dm6]	A	C	3.389e^-4	0.85	START_GAINED Wwox UTR_5_PRIME Wwox DOWNSTREAM Spn28Dc
2L	12145898	2L_12145898_SNP [dm3] 2L_12145898_SNP [dm6]	C	T	3.391e^-4	0.85	INTRON CG31760
2R	20091659	2R_20091659_SNP [dm3] 2R_24204136_SNP [dm6]	C	T	3.395e^-4	0.85	UTR_3_PRIME CG11406 INTRON CG11406
3L	16665260	3L_16665260_SNP [dm3] 3L_16672160_SNP [dm6]	G	T	3.396e^-4	0.85	UTR_3_PRIME zetaCOP INTRON zetaCOP
2L	7571363	2L_7571363_SNP [dm3] 2L_7571363_SNP [dm6]	T	A	3.398e^-4	0.85	INTRON RapGAP1
X	2577538	X_2577538_SNP [dm3] X_2683505_SNP [dm6]	C	T	3.400e^-4	0.85	UPSTREAM CG2652 EXON CR44470
X	1029310	X_1029310_DEL [dm3] X_1135277_DEL [dm6]	GC	G	3.402e^-4	0.85	UPSTREAM CG3655 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13298888	3R_13298888_SNP [dm3] 3R_17473166_SNP [dm6]	G	T	3.407e^-4	0.85	DOWNSTREAM Dscam3 INTERGENIC
2L	3935028	2L_3935028_SNP [dm3] 2L_3935028_SNP [dm6]	T	A	3.419e^-4	0.85	INTRON fred
2R	9542737	2R_9542737_SNP [dm3] 2R_13655232_SNP [dm6]	A	T	3.432e^-4	0.85	INTRON fas
3R	13364526	3R_13364526_SNP [dm3] 3R_17538804_SNP [dm6]	G	C	3.435e^-4	0.85	NON_SYNONYMOUS_CODING l_3_07882	TF binding site mE1_TFBS_sens
X	21329694	X_21329694_SNP [dm3] X_21458667_SNP [dm6]	G	C	3.439e^-4	0.85	UPSTREAM CG42343 INTERGENIC
2R	14506375	2R_14506375_SNP [dm3] 2R_18618870_SNP [dm6]	G	T	3.441e^-4	0.85	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	17524632	X_17524632_SNP [dm3] X_17630599_SNP [dm6]	A	G	3.442e^-4	0.85	SYNONYMOUS_CODING CG8316	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18921818	X_18921818_DEL [dm3] X_19027785_DEL [dm6]	AA	A	3.453e^-4	0.85	UTR_3_PRIME CG43759 DOWNSTREAM CG43759
3L	2074315	3L_2074315_SNP [dm3] 3L_2074315_SNP [dm6]	A	T	3.455e^-4	0.85	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
2L	10568075	2L_10568075_SNP [dm3] 2L_10568075_SNP [dm6]	G	T	3.456e^-4	0.85	DOWNSTREAM CG6138 INTRON Trim9
2L	10091948	2L_10091948_SNP [dm3] 2L_10091948_SNP [dm6]	A	G	3.457e^-4	0.85	SYNONYMOUS_CODING CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4158962	2R_4158962_SNP [dm3] 2R_8271457_SNP [dm6]	T	A	3.458e^-4	0.85	INTERGENIC
X	5000567	X_5000567_DEL [dm3] X_5106534_DEL [dm6]	TTGT	T	3.463e^-4	0.85	INTRON rg & 1 other
2R	14574857	2R_14574857_SNP [dm3] 2R_18687352_SNP [dm6]	A	T	3.468e^-4	0.85	UPSTREAM CG42855 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18600387	2R_18600387_SNP [dm3] 2R_22712882_SNP [dm6]	T	C	3.470e^-4	0.85	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
2L	21270277	2L_21270277_SNP [dm3] 2L_21270277_SNP [dm6]	G	C	3.472e^-4	0.85	INTRON CG8671	transposable element FlyBase
3L	13199425	3L_13199425_SNP [dm3] 3L_13206325_SNP [dm6]	T	C	3.472e^-4	0.85	INTERGENIC
X	12635896	X_12635896_SNP [dm3] X_12741863_SNP [dm6]	T	G	3.480e^-4	0.85	UPSTREAM CR45623 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18382582	2R_18382582_SNP [dm3] 2R_22495077_SNP [dm6]	G	A	3.483e^-4	0.85	UTR_3_PRIME px DOWNSTREAM CG4610
X	22055765	X_22055765_SNP [dm3] X_22653929_SNP [dm6]	C	T	3.498e^-4	0.85	INTERGENIC	transposable element FlyBase
3R	10162728	3R_10162728_DEL [dm3] 3R_14337006_DEL [dm6]	TTT	T	3.500e^-4	0.85	INTRON NK7.1	TF binding site mE1_TFBS_kn
3L	15373618	3L_15373618_SNP [dm3] 3L_15380518_SNP [dm6]	C	T	3.503e^-4	0.85	INTERGENIC
3L	15373619	3L_15373619_SNP [dm3] 3L_15380519_SNP [dm6]	A	G	3.503e^-4	0.85	INTERGENIC
2R	3991953	2R_3991953_SNP [dm3] 2R_8104448_SNP [dm6]	C	T	3.504e^-4	0.85	SPLICE_SITE_REGION Cul4 INTRON Cul4
3R	10795177	3R_10795177_SNP [dm3] 3R_14969455_SNP [dm6]	T	G	3.506e^-4	0.85	INTERGENIC
2L	14282171	2L_14282171_SNP [dm3] 2L_14282171_SNP [dm6]	C	T	3.511e^-4	0.85	INTRON wb
3L	5485967	3L_5485967_SNP [dm3] 3L_5492867_SNP [dm6]	G	C	3.512e^-4	0.85	DOWNSTREAM CR44520 INTERGENIC
2R	20087425	2R_20087425_SNP [dm3] 2R_24199902_SNP [dm6]	A	C	3.512e^-4	0.85	INTRON CG3356	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19886215	2L_19886215_SNP [dm3] 2L_19886215_SNP [dm6]	A	C	3.512e^-4	0.85	INTRON sick
2L	10798678	2L_10798678_DEL [dm3] 2L_10798678_DEL [dm6]	TT	T	3.517e^-4	0.85	INTRON CG31869
2L	7927250	2L_7927250_SNP [dm3] 2L_7927250_SNP [dm6]	G	A	3.518e^-4	0.85	INTRON Snoo
3L	11071755	3L_11071755_SNP [dm3] 3L_11078655_SNP [dm6]	C	T	3.526e^-4	0.85	UTR_3_PRIME CG7839 DOWNSTREAM JIL-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18991687	3R_18991687_DEL [dm3] 3R_23165965_DEL [dm6]	ATGCATACGA	A	3.531e^-4	0.85	INTERGENIC
2L	8004062	2L_8004062_SNP [dm3] 2L_8004062_SNP [dm6]	A	C	3.532e^-4	0.85	DOWNSTREAM Spn28Dc INTRON Wwox
2L	8004489	2L_8004489_SNP [dm3] 2L_8004489_SNP [dm6]	C	T	3.532e^-4	0.85	UPSTREAM Wwox DOWNSTREAM Spn28Dc INTERGENIC	TF binding site mE1_TFBS_cad
2L	8004532	2L_8004532_SNP [dm3] 2L_8004532_SNP [dm6]	C	A	3.532e^-4	0.85	UPSTREAM Wwox DOWNSTREAM Spn28Dc INTERGENIC	TF binding site mE1_TFBS_cad
2L	8004546	2L_8004546_SNP [dm3] 2L_8004546_SNP [dm6]	T	C	3.532e^-4	0.85	UPSTREAM Wwox DOWNSTREAM Spn28Dc INTERGENIC	TF binding site mE1_TFBS_cad
2L	8004507	2L_8004507_SNP [dm3] 2L_8004507_SNP [dm6]	G	A	3.537e^-4	0.85	UPSTREAM Wwox DOWNSTREAM Spn28Dc INTERGENIC	TF binding site mE1_TFBS_cad
3R	21139354	3R_21139354_SNP [dm3] 3R_25313632_SNP [dm6]	G	A	3.546e^-4	0.85	DOWNSTREAM CG10559 INTRON CG31087
3L	18412497	3L_18412497_SNP [dm3] 3L_18419397_SNP [dm6]	A	G	3.549e^-4	0.85	INTERGENIC
3R	5194774	3R_5194774_SNP [dm3] 3R_9369052_SNP [dm6]	C	T	3.554e^-4	0.85	SPLICE_SITE_REGION FER INTRON FER
3R	17375757	3R_17375757_SNP [dm3] 3R_21550035_SNP [dm6]	A	G	3.560e^-4	0.85	INTRON slou
3R	21750835	3R_21750835_SNP [dm3] 3R_25925113_SNP [dm6]	G	T	3.567e^-4	0.85	SYNONYMOUS_CODING CCAP-R
2L	2391737	2L_2391737_SNP [dm3] 2L_2391737_SNP [dm6]	G	A	3.579e^-4	0.85	UTR_5_PRIME VGlut
3L	10046108	3L_10046108_SNP [dm3] 3L_10053008_SNP [dm6]	A	T	3.580e^-4	0.85	INTRON dpr6
2L	7851107	2L_7851107_SNP [dm3] 2L_7851107_SNP [dm6]	G	A	3.586e^-4	0.85	INTRON CG14535
3R	10836711	3R_10836711_SNP [dm3] 3R_15010989_SNP [dm6]	T	C	3.589e^-4	0.85	INTERGENIC
2R	16785189	2R_16785189_DEL [dm3] 2R_20897684_DEL [dm6]	AGATATACACAGA...	A	3.593e^-4	0.85	UPSTREAM otp INTRON otp EXON CR43160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12597075	3L_12597075_SNP [dm3] 3L_12603975_SNP [dm6]	A	G	3.593e^-4	0.85	INTERGENIC
3L	10265934	3L_10265934_SNP [dm3] 3L_10272834_SNP [dm6]	G	T	3.595e^-4	0.85	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3R	13102774	3R_13102774_SNP [dm3] 3R_17277052_SNP [dm6]	A	C	3.606e^-4	0.85	INTERGENIC
2L	8004534	2L_8004534_SNP [dm3] 2L_8004534_SNP [dm6]	A	T	3.615e^-4	0.85	UPSTREAM Wwox DOWNSTREAM Spn28Dc INTERGENIC	TF binding site mE1_TFBS_cad
2L	19884530	2L_19884530_SNP [dm3] 2L_19884530_SNP [dm6]	A	T	3.624e^-4	0.85	INTRON sick
3L	10048297	3L_10048297_SNP [dm3] 3L_10055197_SNP [dm6]	C	G	3.625e^-4	0.85	INTRON dpr6
2R	1001099	2R_1001099_SNP [dm3] 2R_5113594_SNP [dm6]	G	C	3.634e^-4	0.85	INTERGENIC	transposable element FlyBase
X	15585881	X_15585881_SNP [dm3] X_15691848_SNP [dm6]	T	A	3.636e^-4	0.85	UPSTREAM CR45523 DOWNSTREAM CG43132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	10775747	X_10775747_SNP [dm3] X_10881714_SNP [dm6]	G	T	3.639e^-4	0.85	INTRON Ork1
2L	10555124	2L_10555124_SNP [dm3] 2L_10555124_SNP [dm6]	T	C	3.642e^-4	0.85	INTRON Trim9	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
X	12628491	X_12628491_SNP [dm3] X_12734458_SNP [dm6]	C	A	3.652e^-4	0.85	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	2996381	2L_2996381_SNP [dm3] 2L_2996381_SNP [dm6]	T	C	3.658e^-4	0.85	SYNONYMOUS_CODING CG3558
2R	6398364	2R_6398364_SNP [dm3] 2R_10510859_SNP [dm6]	C	T	3.661e^-4	0.85	SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5864563	3L_5864563_SNP [dm3] 3L_5871463_SNP [dm6]	G	T	3.665e^-4	0.85	UPSTREAM CG5568 INTERGENIC
3L	17446626	3L_17446626_SNP [dm3] 3L_17453526_SNP [dm6]	A	C	3.678e^-4	0.85	UTR_3_PRIME CG18265
3L	11034702	3L_11034702_SNP [dm3] 3L_11041602_SNP [dm6]	T	C	3.681e^-4	0.85	INTRON CG43693	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	5335634	X_5335634_SNP [dm3] X_5441601_SNP [dm6]	A	T	3.685e^-4	0.85	INTERGENIC
2L	8004065	2L_8004065_SNP [dm3] 2L_8004065_SNP [dm6]	A	T	3.687e^-4	0.85	DOWNSTREAM Spn28Dc INTRON Wwox
3R	13939518	3R_13939518_SNP [dm3] 3R_18113796_SNP [dm6]	C	T	3.687e^-4	0.85	INTRON sr
2R	18366483	2R_18366483_SNP [dm3] 2R_22478978_SNP [dm6]	G	C	3.688e^-4	0.85	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18799802	2R_18799802_SNP [dm3] 2R_22912279_SNP [dm6]	G	A	3.692e^-4	0.85	NON_SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	23074390	3R_23074390_SNP [dm3] 3R_27248668_SNP [dm6]	A	C	3.693e^-4	0.85	SYNONYMOUS_CODING CG5987 UPSTREAM CG5984	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13181222	3R_13181222_SNP [dm3] 3R_17355500_SNP [dm6]	G	A	3.695e^-4	0.85	INTRON beat-IIa	TF binding site mE1_TFBS_inv
3L	9975020	3L_9975020_SNP [dm3] 3L_9981920_SNP [dm6]	A	G	3.699e^-4	0.85	INTRON dpr6
3R	10208069	3R_10208069_SNP [dm3] 3R_14382347_SNP [dm6]	T	C	3.701e^-4	0.85	UPSTREAM soti INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6120346	2R_6120346_SNP [dm3] 2R_10232841_SNP [dm6]	G	A	3.702e^-4	0.85	SYNONYMOUS_CODING Hr46 UTR_5_PRIME Hr46 UTR_3_PRIME CG12912 DOWNSTREAM CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	3236732	2L_3236732_SNP [dm3] 2L_3236732_SNP [dm6]	C	T	3.706e^-4	0.85	INTERGENIC
2L	3138506	2L_3138506_SNP [dm3] 2L_3138506_SNP [dm6]	C	T	3.733e^-4	0.85	INTRON toc
2L	2992752	2L_2992752_SNP [dm3] 2L_2992752_SNP [dm6]	G	A	3.739e^-4	0.85	UTR_5_PRIME okr UPSTREAM CG3558	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14525981	3R_14525981_SNP [dm3] 3R_18700259_SNP [dm6]	T	C	3.747e^-4	0.85	INTERGENIC
2L	995288	2L_995288_SNP [dm3] 2L_995288_SNP [dm6]	T	C	3.754e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5639389	2R_5639389_SNP [dm3] 2R_9751884_SNP [dm6]	A	G	3.761e^-4	0.85	INTERGENIC
3R	10742722	3R_10742722_SNP [dm3] 3R_14917000_SNP [dm6]	A	G	3.763e^-4	0.85	INTERGENIC
3R	15815337	3R_15815337_INS [dm3] 3R_19989615_INS [dm6]	C	CTTTTCCATCCAAATGTATA...	3.766e^-4	0.85	INTRON Hs6st
2L	19886177	2L_19886177_SNP [dm3] 2L_19886177_SNP [dm6]	C	G	3.779e^-4	0.85	INTRON sick
X	12746712	X_12746712_SNP [dm3] X_12852679_SNP [dm6]	C	T	3.784e^-4	0.85	INTRON Pde9
2L	946562	2L_946562_SNP [dm3] 2L_946562_SNP [dm6]	C	T	3.785e^-4	0.85	INTRON CG4341
X	5440683	X_5440683_SNP [dm3] X_5546650_SNP [dm6]	T	A	3.795e^-4	0.85	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	15343924	3R_15343924_SNP [dm3] 3R_19518202_SNP [dm6]	G	T	3.808e^-4	0.85	INTRON Dys
3L	10160135	3L_10160135_SNP [dm3] 3L_10167035_SNP [dm6]	C	T	3.810e^-4	0.85	UPSTREAM CG6628 INTRON dpr10
3L	5199993	3L_5199993_SNP [dm3] 3L_5206893_SNP [dm6]	G	A	3.819e^-4	0.85	INTRON shep
3R	21340315	3R_21340315_SNP [dm3] 3R_25514593_SNP [dm6]	C	A	3.824e^-4	0.85	INTERGENIC
2R	17474760	2R_17474760_SNP [dm3] 2R_21587255_SNP [dm6]	C	T	3.824e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1480027	2L_1480027_SNP [dm3] 2L_1480027_SNP [dm6]	T	A	3.825e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12625760	2R_12625760_SNP [dm3] 2R_16738255_SNP [dm6]	A	T	3.831e^-4	0.85	UPSTREAM CG43104 EXON CR44464	TF binding site mE1_TFBS_cad
3R	13142077	3R_13142077_SNP [dm3] 3R_17316355_SNP [dm6]	G	T	3.847e^-4	0.85	INTERGENIC
2L	1480033	2L_1480033_SNP [dm3] 2L_1480033_SNP [dm6]	C	A	3.848e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6514023	3L_6514023_SNP [dm3] 3L_6520923_SNP [dm6]	C	T	3.856e^-4	0.85	INTRON sfl
3R	14125594	3R_14125594_DEL [dm3] 3R_18299872_DEL [dm6]	TTTTTGATCGGCC...	T	3.859e^-4	0.85	UTR_3_PRIME Dlc90F UPSTREAM l_3_05822 DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens
3R	21142786	3R_21142786_SNP [dm3] 3R_25317064_SNP [dm6]	A	G	3.861e^-4	0.85	SYNONYMOUS_CODING CG10553 UPSTREAM CG10559
2L	10503131	2L_10503131_SNP [dm3] 2L_10503131_SNP [dm6]	T	C	3.864e^-4	0.85	INTRON Myo31DF
2L	1019114	2L_1019114_SNP [dm3] 2L_1019114_SNP [dm6]	T	C	3.876e^-4	0.85	INTRON IA-2
X	15489748	X_15489748_SNP [dm3] X_15595715_SNP [dm6]	A	C	3.879e^-4	0.85	INTERGENIC
3R	10650901	3R_10650901_SNP [dm3] 3R_14825179_SNP [dm6]	A	T	3.881e^-4	0.85	SPLICE_SITE_REGION btsz INTRON btsz
2R	20205263	2R_20205263_SNP [dm3] 2R_24317740_SNP [dm6]	C	A	3.884e^-4	0.85	INTERGENIC
3L	17444492	3L_17444492_SNP [dm3] 3L_17451392_SNP [dm6]	G	A	3.892e^-4	0.85	SYNONYMOUS_CODING CG18265	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18932552	3R_18932552_SNP [dm3] 3R_23106830_SNP [dm6]	C	T	3.893e^-4	0.85	INTRON CG13830
2R	11139518	2R_11139518_INS [dm3] 2R_15252013_INS [dm6]	A	AG	3.907e^-4	0.85	UPSTREAM scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	1471939	2L_1471939_SNP [dm3] 2L_1471939_SNP [dm6]	T	A	3.918e^-4	0.85	INTERGENIC
2R	14508898	2R_14508898_SNP [dm3] 2R_18621393_SNP [dm6]	T	C	3.921e^-4	0.85	UPSTREAM CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA
2L	3398688	2L_3398688_SNP [dm3] 2L_3398688_SNP [dm6]	C	T	3.922e^-4	0.85	UPSTREAM CR44792 DOWNSTREAM CG34175 INTERGENIC
2R	17694007	2R_17694007_SNP [dm3] 2R_21806502_SNP [dm6]	T	A	3.944e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	3166692	3L_3166692_SNP [dm3] 3L_3166692_SNP [dm6]	C	T	3.944e^-4	0.85	UPSTREAM Asciz INTRON CG32280	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3166743	3L_3166743_SNP [dm3] 3L_3166743_SNP [dm6]	A	G	3.944e^-4	0.85	UPSTREAM Asciz INTRON CG32280	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	5451819	X_5451819_SNP [dm3] X_5557786_SNP [dm6]	T	A	3.954e^-4	0.85	INTRON Vsx2
3R	22142443	3R_22142443_DEL [dm3] 3R_26316721_DEL [dm6]	CA	C	3.966e^-4	0.85	INTERGENIC
3R	11631830	3R_11631830_SNP [dm3] 3R_15806108_SNP [dm6]	G	C	3.975e^-4	0.85	INTRON alpha-Man-IIb
3L	1435593	3L_1435593_SNP [dm3] 3L_1435593_SNP [dm6]	G	T	3.978e^-4	0.85	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12589322	3L_12589322_SNP [dm3] 3L_12596222_SNP [dm6]	C	T	3.990e^-4	0.85	DOWNSTREAM ara INTERGENIC
2L	7600907	2L_7600907_SNP [dm3] 2L_7600907_SNP [dm6]	C	T	3.991e^-4	0.85	INTERGENIC
2L	8494067	2L_8494067_SNP [dm3] 2L_8494067_SNP [dm6]	C	T	3.998e^-4	0.85	DOWNSTREAM Bace INTRON Dh31
2R	8488326	2R_8488326_SNP [dm3] 2R_12600821_SNP [dm6]	G	A	4.001e^-4	0.85	INTRON Amph
X	8715202	X_8715202_SNP [dm3] X_8821169_SNP [dm6]	G	T	4.008e^-4	0.85	INTERGENIC
2R	15303247	2R_15303247_INS [dm3] 2R_19415742_INS [dm6]	T	TTTACTTT	4.008e^-4	0.85	DOWNSTREAM tRNA:CR30225 & 1 other INTRON hts	TF binding site BDTNP1_TFBS_twi
3L	10675575	3L_10675575_SNP [dm3] 3L_10682475_SNP [dm6]	C	T	4.011e^-4	0.85	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9929960	3R_9929960_SNP [dm3] 3R_14104238_SNP [dm6]	T	A	4.014e^-4	0.85	DOWNSTREAM CG12402 INTERGENIC
3L	4959614	3L_4959614_SNP [dm3] 3L_4959614_SNP [dm6]	T	A	4.014e^-4	0.85	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	10133972	X_10133972_SNP [dm3] X_10239939_SNP [dm6]	A	T	4.018e^-4	0.85	INTRON Hk
3L	10732694	3L_10732694_SNP [dm3] 3L_10739594_SNP [dm6]	A	G	4.024e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6030162	3L_6030162_SNP [dm3] 3L_6037062_SNP [dm6]	G	A	4.028e^-4	0.85	UPSTREAM CG6462 DOWNSTREAM yip7 & 1 other INTERGENIC
2L	19884520	2L_19884520_SNP [dm3] 2L_19884520_SNP [dm6]	A	G	4.038e^-4	0.85	INTRON sick
2L	19886223	2L_19886223_SNP [dm3] 2L_19886223_SNP [dm6]	A	T	4.039e^-4	0.85	INTRON sick
X	2603980	X_2603980_SNP [dm3] X_2709947_SNP [dm6]	C	A	4.039e^-4	0.85	INTRON CG2681	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19687941	2R_19687941_SNP [dm3] 2R_23800418_SNP [dm6]	T	A	4.040e^-4	0.85	INTERGENIC
3L	3557183	3L_3557183_SNP [dm3] 3L_3557183_SNP [dm6]	G	A	4.047e^-4	0.85	INTRON Eip63E
3L	16663124	3L_16663124_SNP [dm3] 3L_16670024_SNP [dm6]	T	C	4.059e^-4	0.85	DOWNSTREAM CR45241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7438788	2R_7438788_SNP [dm3] 2R_11551283_SNP [dm6]	T	C	4.069e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11906023	X_11906023_SNP [dm3] X_12011990_SNP [dm6]	C	T	4.077e^-4	0.85	UPSTREAM regucalcin INTRON CG1492	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6508423	2R_6508423_SNP [dm3] 2R_10620918_SNP [dm6]	T	C	4.079e^-4	0.85	INTRON CG11883
2L	5113894	2L_5113894_SNP [dm3] 2L_5113894_SNP [dm6]	G	C	4.081e^-4	0.85	INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14504699	2R_14504699_SNP [dm3] 2R_18617194_SNP [dm6]	T	C	4.081e^-4	0.85	SPLICE_SITE_REGION CG5493 INTRON CG5493 & 1 other
2L	14999409	2L_14999409_SNP [dm3] 2L_14999409_SNP [dm6]	A	G	4.083e^-4	0.85	INTERGENIC
2R	13704171	2R_13704171_SNP [dm3] 2R_17816666_SNP [dm6]	C	A	4.089e^-4	0.85	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14633670	2L_14633670_SNP [dm3] 2L_14633670_SNP [dm6]	T	G	4.094e^-4	0.85	INTRON osp
2L	15467647	2L_15467647_SNP [dm3] 2L_15467647_SNP [dm6]	A	C	4.095e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8793013	2L_8793013_SNP [dm3] 2L_8793013_SNP [dm6]	T	A	4.095e^-4	0.85	INTERGENIC
3L	5864666	3L_5864666_SNP [dm3] 3L_5871566_SNP [dm6]	C	T	4.098e^-4	0.85	UTR_5_PRIME CG5568
3R	16360287	3R_16360287_SNP [dm3] 3R_20534565_SNP [dm6]	C	T	4.108e^-4	0.85	UPSTREAM MtnD DOWNSTREAM Stat92E INTRON MtnE
3R	21142974	3R_21142974_SNP [dm3] 3R_25317252_SNP [dm6]	G	T	4.108e^-4	0.85	INTRON CG10553	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16207723	3R_16207723_SNP [dm3] 3R_20382001_SNP [dm6]	A	G	4.111e^-4	0.85	SYNONYMOUS_CODING Gfrl
3R	9588138	3R_9588138_SNP [dm3] 3R_13762416_SNP [dm6]	C	T	4.114e^-4	0.85	DOWNSTREAM CG34383 INTRON CG34383
2L	3314676	2L_3314676_SNP [dm3] 2L_3314676_SNP [dm6]	A	C	4.126e^-4	0.85	INTRON CG3277
2L	8707230	2L_8707230_SNP [dm3] 2L_8707230_SNP [dm6]	A	G	4.126e^-4	0.85	SYNONYMOUS_CODING CG9314 INTRON Hnf4
3R	15344139	3R_15344139_SNP [dm3] 3R_19518417_SNP [dm6]	A	G	4.129e^-4	0.85	INTRON Dys
3R	21547530	3R_21547530_SNP [dm3] 3R_25721808_SNP [dm6]	C	G	4.139e^-4	0.85	INTRON LpR2
3L	1435563	3L_1435563_SNP [dm3] 3L_1435563_SNP [dm6]	C	T	4.145e^-4	0.85	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11483481	2R_11483481_SNP [dm3] 2R_15595976_SNP [dm6]	T	C	4.146e^-4	0.85	INTERGENIC
3R	10499457	3R_10499457_SNP [dm3] 3R_14673735_SNP [dm6]	A	G	4.155e^-4	0.85	INTRON Meltrin
3R	26316081	3R_26316081_SNP [dm3] 3R_30490359_SNP [dm6]	T	G	4.166e^-4	0.85	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
X	16199113	X_16199113_SNP [dm3] X_16305080_SNP [dm6]	C	T	4.169e^-4	0.85	INTRON CG3679
3R	18575429	3R_18575429_SNP [dm3] 3R_22749707_SNP [dm6]	G	C	4.175e^-4	0.85	SYNONYMOUS_CODING rumi UPSTREAM CG31139	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
X	5989321	X_5989321_SNP [dm3] X_6095288_SNP [dm6]	A	G	4.176e^-4	0.85	INTRON Nep1
3L	13069394	3L_13069394_SNP [dm3] 3L_13076294_SNP [dm6]	A	T	4.178e^-4	0.85	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da mE1_TFBS_disco
3R	10650941	3R_10650941_SNP [dm3] 3R_14825219_SNP [dm6]	G	A	4.179e^-4	0.85	INTRON btsz
2L	21918019	2L_21918019_SNP [dm3] 2L_21918019_SNP [dm6]	C	G	4.184e^-4	0.85	DOWNSTREAM CG11634 INTRON CG11634
2L	9995148	2L_9995148_SNP [dm3] 2L_9995148_SNP [dm6]	T	G	4.191e^-4	0.85	UTR_3_PRIME bib DOWNSTREAM CG31875
2L	3770775	2L_3770775_SNP [dm3] 2L_3770775_SNP [dm6]	C	A	4.193e^-4	0.85	UPSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	16661685	3L_16661685_SNP [dm3] 3L_16668585_SNP [dm6]	G	A	4.197e^-4	0.85	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	18565295	3R_18565295_SNP [dm3] 3R_22739573_SNP [dm6]	G	A	4.200e^-4	0.85	SYNONYMOUS_CODING Dcr-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16057805	2R_16057805_SNP [dm3] 2R_20170300_SNP [dm6]	T	C	4.203e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22086759	3R_22086759_SNP [dm3] 3R_26261037_SNP [dm6]	G	A	4.207e^-4	0.85	INTRON Ald EXON CR44321	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	21267366	2L_21267366_SNP [dm3] 2L_21267366_SNP [dm6]	G	C	4.210e^-4	0.85	INTRON CG8671
3R	12897264	3R_12897264_SNP [dm3] 3R_17071542_SNP [dm6]	C	T	4.212e^-4	0.85	SYNONYMOUS_CODING Ns1
2L	7198608	2L_7198608_SNP [dm3] 2L_7198608_SNP [dm6]	T	G	4.218e^-4	0.85	INTRON CG4502
3L	13559472	3L_13559472_SNP [dm3] 3L_13566372_SNP [dm6]	C	G	4.218e^-4	0.85	INTRON bru-3
2L	13305595	2L_13305595_SNP [dm3] 2L_13305595_SNP [dm6]	C	T	4.219e^-4	0.85	UTR_5_PRIME CG16825 UPSTREAM CG16825 DOWNSTREAM CG43779 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	761411	3L_761411_SNP [dm3] 3L_761411_SNP [dm6]	A	G	4.224e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb
3L	10559093	3L_10559093_SNP [dm3] 3L_10565993_SNP [dm6]	A	G	4.226e^-4	0.85	INTRON A2bp1
3R	15414110	3R_15414110_SNP [dm3] 3R_19588388_SNP [dm6]	T	A	4.234e^-4	0.85	INTRON Dys
2L	15121008	2L_15121008_SNP [dm3] 2L_15121008_SNP [dm6]	A	T	4.241e^-4	0.85	DOWNSTREAM CR43853 INTERGENIC
3L	3166356	3L_3166356_SNP [dm3] 3L_3166356_SNP [dm6]	A	G	4.247e^-4	0.85	UPSTREAM Asciz INTRON CG32280	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	15169595	X_15169595_DEL [dm3] X_15275562_DEL [dm6]	ATATCCG	A	4.247e^-4	0.85	INTERGENIC
X	15169612	X_15169612_DEL [dm3] X_15275579_DEL [dm6]	AGA	A	4.247e^-4	0.85	INTERGENIC
X	15169624	X_15169624_SNP [dm3] X_15275591_SNP [dm6]	G	T	4.247e^-4	0.85	INTERGENIC
X	15169626	X_15169626_SNP [dm3] X_15275593_SNP [dm6]	T	C	4.247e^-4	0.85	INTERGENIC
X	15169631	X_15169631_MNP [dm3] X_15275598_MNP [dm6]	AGA	CTT	4.247e^-4	0.85	INTERGENIC
X	15169634	X_15169634_DEL [dm3] X_15275601_DEL [dm6]	AGA	A	4.247e^-4	0.85	INTERGENIC
2L	918403	2L_918403_SNP [dm3] 2L_918403_SNP [dm6]	T	A	4.249e^-4	0.85	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
3R	21139203	3R_21139203_SNP [dm3] 3R_25313481_SNP [dm6]	A	G	4.254e^-4	0.85	INTRON CG31087
X	10808826	X_10808826_SNP [dm3] X_10914793_SNP [dm6]	C	T	4.256e^-4	0.85	SYNONYMOUS_CODING CG43901
2L	2996284	2L_2996284_SNP [dm3] 2L_2996284_SNP [dm6]	T	A	4.258e^-4	0.85	NON_SYNONYMOUS_CODING CG3558	TF binding site mE1_TFBS_chinmo
2R	7679297	2R_7679297_SNP [dm3] 2R_11791792_SNP [dm6]	G	A	4.263e^-4	0.85	INTRON ths	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	10046385	3L_10046385_SNP [dm3] 3L_10053285_SNP [dm6]	T	C	4.263e^-4	0.85	INTRON dpr6
2L	7797964	2L_7797964_SNP [dm3] 2L_7797964_SNP [dm6]	T	C	4.265e^-4	0.85	INTRON Herp
2R	19537906	2R_19537906_SNP [dm3] 2R_23650383_SNP [dm6]	T	C	4.277e^-4	0.85	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8032726	2L_8032726_DEL [dm3] 2L_8032726_DEL [dm6]	AA	A	4.280e^-4	0.85	INTRON CG7367 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	20219231	2R_20219231_SNP [dm3] 2R_24331708_SNP [dm6]	T	G	4.285e^-4	0.85	UTR_3_PRIME slbo
3R	25360360	3R_25360360_SNP [dm3] 3R_29534638_SNP [dm6]	C	T	4.287e^-4	0.85	EXON CR43613	TF binding site mE1_TFBS_chinmo
X	19369884	X_19369884_SNP [dm3] X_19475851_SNP [dm6]	C	T	4.288e^-4	0.85	UTR_3_PRIME CG12200 INTRON CG32533
2L	3856414	2L_3856414_SNP [dm3] 2L_3856414_SNP [dm6]	A	T	4.293e^-4	0.85	DOWNSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	11905981	X_11905981_SNP [dm3] X_12011948_SNP [dm6]	T	C	4.295e^-4	0.85	UPSTREAM regucalcin INTRON CG1492	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19886163	2L_19886163_INS [dm3] 2L_19886163_INS [dm6]	G	GC	4.311e^-4	0.85	INTRON sick
X	2584580	X_2584580_INS [dm3] X_2690547_INS [dm6]	C	CAGGTAC	4.321e^-4	0.85		TF binding site mE1_TFBS_chinmo
2R	17904765	2R_17904765_SNP [dm3] 2R_22017260_SNP [dm6]	T	G	4.327e^-4	0.85	INTRON CG34370
3R	11009025	3R_11009025_SNP [dm3] 3R_15183303_SNP [dm6]	C	T	4.333e^-4	0.85	INTRON Gyc88E
X	7860682	X_7860682_SNP [dm3] X_7966649_SNP [dm6]	A	G	4.338e^-4	0.85	INTRON sn & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1938358	2L_1938358_SNP [dm3] 2L_1938358_SNP [dm6]	T	A	4.342e^-4	0.85	UPSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site mE1_TFBS_HSA
2R	4159025	2R_4159025_SNP [dm3] 2R_8271520_SNP [dm6]	A	T	4.346e^-4	0.85	INTERGENIC
2R	11076409	2R_11076409_SNP [dm3] 2R_15188904_SNP [dm6]	C	T	4.352e^-4	0.85	SYNONYMOUS_CODING igl
2R	13409902	2R_13409902_SNP [dm3] 2R_17522397_SNP [dm6]	T	G	4.357e^-4	0.85	INTRON Patronin
3L	8249400	3L_8249400_SNP [dm3] 3L_8256300_SNP [dm6]	T	C	4.358e^-4	0.85	INTRON Dscam4
3L	8039324	3L_8039324_SNP [dm3] 3L_8046224_SNP [dm6]	T	A	4.358e^-4	0.85	INTRON nmo
2R	16732256	2R_16732256_SNP [dm3] 2R_20844751_SNP [dm6]	G	A	4.366e^-4	0.85	INTERGENIC
3L	14081045	3L_14081045_SNP [dm3] 3L_14087945_SNP [dm6]	A	G	4.368e^-4	0.85	INTERGENIC
2L	9836457	2L_9836457_SNP [dm3] 2L_9836457_SNP [dm6]	C	T	4.371e^-4	0.85	INTRON nAChRalpha6
3L	5569093	3L_5569093_SNP [dm3] 3L_5575993_SNP [dm6]	T	G	4.375e^-4	0.85	UPSTREAM Msr-110 INTRON Msr-110
3L	18951495	3L_18951495_SNP [dm3] 3L_18958395_SNP [dm6]	C	A	4.378e^-4	0.85	INTERGENIC
3L	9975366	3L_9975366_SNP [dm3] 3L_9982266_SNP [dm6]	A	T	4.379e^-4	0.85	INTRON dpr6
3L	3557093	3L_3557093_SNP [dm3] 3L_3557093_SNP [dm6]	A	G	4.380e^-4	0.85	INTRON Eip63E
2R	17474775	2R_17474775_SNP [dm3] 2R_21587270_SNP [dm6]	A	G	4.385e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13141021	3R_13141021_SNP [dm3] 3R_17315299_SNP [dm6]	A	G	4.396e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	16918046	2R_16918046_SNP [dm3] 2R_21030541_SNP [dm6]	C	T	4.397e^-4	0.85	UPSTREAM CR45148 INTERGENIC
3L	14346897	3L_14346897_SNP [dm3] 3L_14353797_SNP [dm6]	G	C	4.401e^-4	0.85	INTRON fz
2R	5606803	2R_5606803_SNP [dm3] 2R_9719298_SNP [dm6]	C	A	4.404e^-4	0.85	INTRON sqa	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13147307	3R_13147307_SNP [dm3] 3R_17321585_SNP [dm6]	A	T	4.405e^-4	0.85	INTRON beat-IIa	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	1347497	2L_1347497_SNP [dm3] 2L_1347497_SNP [dm6]	A	T	4.410e^-4	0.85	INTERGENIC
3L	13607423	3L_13607423_SNP [dm3] 3L_13614323_SNP [dm6]	C	T	4.424e^-4	0.85	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2R	18733364	2R_18733364_SNP [dm3] 2R_22845841_SNP [dm6]	A	T	4.429e^-4	0.85	UPSTREAM CG3649 INTERGENIC	TF binding site mE1_TFBS_cad
X	2932761	X_2932761_SNP [dm3] X_3038728_SNP [dm6]	T	A	4.431e^-4	0.85	INTRON kirre
2R	13745357	2R_13745357_SNP [dm3] 2R_17857852_SNP [dm6]	A	C	4.450e^-4	0.85	INTRON olf186-F
2R	8525685	2R_8525685_SNP [dm3] 2R_12638180_SNP [dm6]	G	A	4.451e^-4	0.85	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8853570	2R_8853570_SNP [dm3] 2R_12966065_SNP [dm6]	A	T	4.459e^-4	0.85	UTR_3_PRIME Psc DOWNSTREAM Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19395392	X_19395392_DEL [dm3] X_19501359_DEL [dm6]	TT	T	4.464e^-4	0.85	INTRON Pfrx & 1 other
3R	22531290	3R_22531290_SNP [dm3] 3R_26705568_SNP [dm6]	T	C	4.465e^-4	0.85	INTRON amon
2R	18021768	2R_18021768_SNP [dm3] 2R_22134263_SNP [dm6]	C	T	4.466e^-4	0.85	INTERGENIC
2L	3631209	2L_3631209_SNP [dm3] 2L_3631209_SNP [dm6]	T	C	4.468e^-4	0.85	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15582063	2R_15582063_SNP [dm3] 2R_19694558_SNP [dm6]	G	A	4.468e^-4	0.85	EXON CR44506
2R	9131287	2R_9131287_SNP [dm3] 2R_13243782_SNP [dm6]	G	A	4.469e^-4	0.85	DOWNSTREAM CR45278 INTERGENIC
2R	5547886	2R_5547886_SNP [dm3] 2R_9660381_SNP [dm6]	T	C	4.474e^-4	0.85	UPSTREAM tRNA:M3:46A INTRON Mmp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3L	15395739	3L_15395739_SNP [dm3] 3L_15402639_SNP [dm6]	T	A	4.481e^-4	0.85	INTERGENIC
3R	17682349	3R_17682349_SNP [dm3] 3R_21856627_SNP [dm6]	G	C	4.491e^-4	0.85	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Trl
X	12220726	X_12220726_DEL [dm3] X_12326693_DEL [dm6]	GA	G	4.493e^-4	0.85	INTRON Ten-a
3L	10046321	3L_10046321_SNP [dm3] 3L_10053221_SNP [dm6]	G	A	4.503e^-4	0.85	INTRON dpr6
3R	13110652	3R_13110652_SNP [dm3] 3R_17284930_SNP [dm6]	C	T	4.503e^-4	0.85	SYNONYMOUS_CODING CG31419 DOWNSTREAM CG31418
2R	17022895	2R_17022895_SNP [dm3] 2R_21135390_SNP [dm6]	C	T	4.506e^-4	0.85	INTRON Magi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9434378	2L_9434378_SNP [dm3] 2L_9434378_SNP [dm6]	A	T	4.508e^-4	0.85	SYNONYMOUS_CODING scat	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10046388	3L_10046388_SNP [dm3] 3L_10053288_SNP [dm6]	C	T	4.510e^-4	0.85	INTRON dpr6
2R	7401447	2R_7401447_SNP [dm3] 2R_11513942_SNP [dm6]	T	C	4.512e^-4	0.85	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	18754607	2L_18754607_SNP [dm3] 2L_18754607_SNP [dm6]	C	T	4.516e^-4	0.85	INTERGENIC
3R	3633631	3R_3633631_SNP [dm3] 3R_7807909_SNP [dm6]	A	G	4.516e^-4	0.85	INTRON CG2993	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2677843	2L_2677843_SNP [dm3] 2L_2677843_SNP [dm6]	C	T	4.516e^-4	0.85	UTR_5_PRIME CG31690	TF binding site BDTNP1_TFBS_dl
2R	18801446	2R_18801446_SNP [dm3] 2R_22913923_SNP [dm6]	C	T	4.517e^-4	0.85	SYNONYMOUS_CODING nahoda
2R	11925943	2R_11925943_SNP [dm3] 2R_16038438_SNP [dm6]	A	G	4.517e^-4	0.85	SYNONYMOUS_CODING SP2353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13110416	3R_13110416_SNP [dm3] 3R_17284694_SNP [dm6]	C	T	4.520e^-4	0.85	NON_SYNONYMOUS_CODING CG31419 DOWNSTREAM CG31418
2R	18794090	2R_18794090_SNP [dm3] 2R_22906567_SNP [dm6]	A	G	4.522e^-4	0.85	INTRON nahoda
3R	15350268	3R_15350268_SNP [dm3] 3R_19524546_SNP [dm6]	A	G	4.522e^-4	0.85	UTR_5_PRIME Dys INTRON Dys	TF binding site mE1_TFBS_cad
2R	15989710	2R_15989710_SNP [dm3] 2R_20102205_SNP [dm6]	C	G	4.527e^-4	0.85	INTERGENIC
X	7105923	X_7105923_SNP [dm3] X_7211890_SNP [dm6]	A	G	4.540e^-4	0.85	INTRON CR44357 & 1 other
3L	13652246	3L_13652246_SNP [dm3] 3L_13659146_SNP [dm6]	G	T	4.543e^-4	0.85	INTRON bru-3
3R	26276655	3R_26276655_DEL [dm3] 3R_30450933_DEL [dm6]	TTTCGTAT	T	4.544e^-4	0.85	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8983437	2R_8983437_SNP [dm3] 2R_13095932_SNP [dm6]	A	G	4.548e^-4	0.85	INTERGENIC	TF binding site mE1_TFBS_inv
2R	2686116	2R_2686116_SNP [dm3] 2R_6798611_SNP [dm6]	A	T	4.567e^-4	0.85	INTRON Epac
2L	2181376	2L_2181376_SNP [dm3] 2L_2181376_SNP [dm6]	G	C	4.571e^-4	0.85	UPSTREAM CR43751 INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7327143	3L_7327143_SNP [dm3] 3L_7334043_SNP [dm6]	C	A	4.571e^-4	0.85	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens

Missing results

By genomic position
Variant impact
Gene name

SE phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results