DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.021e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	6.6271	0.0364

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3598 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	1103817	2L_1103817_SNP [dm3] 2L_1103817_SNP [dm6]	G	A	1.006e^-7	0.189	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2969875	3R_2969875_SNP [dm3] 3R_7144153_SNP [dm6]	A	G	3.771e^-7	0.194	NON_SYNONYMOUS_CODING CG14610 UPSTREAM CG2656 EXON CR42738
X	8901926	X_8901926_SNP [dm3] X_9007893_SNP [dm6]	T	C	5.119e^-7	0.194	INTRON rdgA & 1 other
2L	6863604	2L_6863604_SNP [dm3] 2L_6863604_SNP [dm6]	A	T	5.235e^-7	0.194	INTRON Nha1
3L	19428254	3L_19428254_SNP [dm3] 3L_19435154_SNP [dm6]	C	A	5.540e^-7	0.194	INTERGENIC
2L	1470621	2L_1470621_SNP [dm3] 2L_1470621_SNP [dm6]	C	T	6.192e^-7	0.194	INTERGENIC
2R	17166739	2R_17166739_SNP [dm3] 2R_21279234_SNP [dm6]	G	C	9.069e^-7	0.209	INTRON Rgk3
3R	2868457	3R_2868457_SNP [dm3] 3R_7042735_SNP [dm6]	A	T	1.034e^-6	0.209	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	12154049	2L_12154049_SNP [dm3] 2L_12154049_SNP [dm6]	A	T	1.291e^-6	0.209	INTRON CG31760
2L	12571601	2L_12571601_SNP [dm3] 2L_12571601_SNP [dm6]	G	A	1.392e^-6	0.209	UPSTREAM CR44598 EXON CR44597
2L	3560264	2L_3560264_DEL [dm3] 2L_3560264_DEL [dm6]	GGC	G	1.455e^-6	0.209	INTERGENIC
2R	12295309	2R_12295309_SNP [dm3] 2R_16407804_SNP [dm6]	A	C	1.570e^-6	0.209	INTRON Sema-2b
3L	18290740	3L_18290740_SNP [dm3] 3L_18297640_SNP [dm6]	G	A	1.736e^-6	0.209	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	2672894	3R_2672894_SNP [dm3] 3R_6847172_SNP [dm6]	C	A	1.800e^-6	0.209	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1103753	2L_1103753_SNP [dm3] 2L_1103753_SNP [dm6]	T	G	1.859e^-6	0.209	NON_SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad
3R	23990720	3R_23990720_SNP [dm3] 3R_28164998_SNP [dm6]	A	T	2.075e^-6	0.209	INTRON CG34354
3R	2906048	3R_2906048_SNP [dm3] 3R_7080326_SNP [dm6]	G	A	2.144e^-6	0.209	UTR_5_PRIME Ref1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1363548	3L_1363548_SNP [dm3] 3L_1363548_SNP [dm6]	C	T	2.550e^-6	0.209	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	6626787	3L_6626787_SNP [dm3] 3L_6633687_SNP [dm6]	C	T	2.602e^-6	0.209	SYNONYMOUS_CODING GluRIA
2L	14242888	2L_14242888_SNP [dm3] 2L_14242888_SNP [dm6]	T	C	3.060e^-6	0.209	INTERGENIC
2L	14242889	2L_14242889_SNP [dm3] 2L_14242889_SNP [dm6]	T	A	3.060e^-6	0.209	INTERGENIC
3R	23066252	3R_23066252_SNP [dm3] 3R_27240530_SNP [dm6]	C	T	3.138e^-6	0.209	SYNONYMOUS_CODING DNApol-alpha73 UPSTREAM CG17991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6863562	2L_6863562_SNP [dm3] 2L_6863562_SNP [dm6]	C	A	3.169e^-6	0.209	INTRON Nha1
2L	13916332	2L_13916332_SNP [dm3] 2L_13916332_SNP [dm6]	A	T	3.214e^-6	0.209	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23990716	3R_23990716_SNP [dm3] 3R_28164994_SNP [dm6]	C	A	3.340e^-6	0.209	INTRON CG34354
2L	14242877	2L_14242877_SNP [dm3] 2L_14242877_SNP [dm6]	T	G	3.524e^-6	0.209	INTERGENIC
2R	19629168	2R_19629168_SNP [dm3] 2R_23741645_SNP [dm6]	A	G	3.550e^-6	0.209	INTRON egl
2L	14242878	2L_14242878_SNP [dm3] 2L_14242878_SNP [dm6]	A	T	3.710e^-6	0.209	INTERGENIC
2L	8582642	2L_8582642_SNP [dm3] 2L_8582642_SNP [dm6]	G	T	3.833e^-6	0.209	INTRON Sema-1a
2L	8582651	2L_8582651_SNP [dm3] 2L_8582651_SNP [dm6]	A	T	3.833e^-6	0.209	INTRON Sema-1a
3R	23990730	3R_23990730_SNP [dm3] 3R_28165008_SNP [dm6]	T	A	4.013e^-6	0.209	INTRON CG34354
2L	13916322	2L_13916322_SNP [dm3] 2L_13916322_SNP [dm6]	A	T	4.145e^-6	0.209	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2351327	3L_2351327_SNP [dm3] 3L_2351327_SNP [dm6]	T	G	4.153e^-6	0.209	INTERGENIC
3R	2931095	3R_2931095_DEL [dm3] 3R_7105373_DEL [dm6]	CGCGCTTACCAATTAAAATA...	C	4.222e^-6	0.209	INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8582659	2L_8582659_SNP [dm3] 2L_8582659_SNP [dm6]	C	T	4.261e^-6	0.209	INTRON Sema-1a
3R	23990747	3R_23990747_SNP [dm3] 3R_28165025_SNP [dm6]	G	T	4.417e^-6	0.209	INTRON CG34354
3L	6041669	3L_6041669_SNP [dm3] 3L_6048569_SNP [dm6]	G	T	4.426e^-6	0.209	INTERGENIC
2L	14242881	2L_14242881_DEL [dm3] 2L_14242881_DEL [dm6]	AGCA	A	4.462e^-6	0.209	INTERGENIC
3R	23990804	3R_23990804_SNP [dm3] 3R_28165082_SNP [dm6]	T	C	4.568e^-6	0.209	INTRON CG34354
3R	15630508	3R_15630508_SNP [dm3] 3R_19804786_SNP [dm6]	G	A	4.575e^-6	0.209	INTRON bnl	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1620055	2L_1620055_SNP [dm3] 2L_1620055_SNP [dm6]	C	T	4.676e^-6	0.209	EXON CR44603
2R	11948886	2R_11948886_SNP [dm3] 2R_16061381_SNP [dm6]	T	C	4.819e^-6	0.209	DOWNSTREAM CG8405 INTERGENIC
2L	12154047	2L_12154047_SNP [dm3] 2L_12154047_SNP [dm6]	A	T	4.845e^-6	0.209	INTRON CG31760
2L	2121424	2L_2121424_SNP [dm3] 2L_2121424_SNP [dm6]	A	C	5.065e^-6	0.209	INTERGENIC
3L	16006440	3L_16006440_SNP [dm3] 3L_16013340_SNP [dm6]	T	A	5.113e^-6	0.209	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	22573087	3R_22573087_SNP [dm3] 3R_26747365_SNP [dm6]	G	A	5.134e^-6	0.209	INTERGENIC
3L	19322258	3L_19322258_SNP [dm3] 3L_19329158_SNP [dm6]	T	C	5.673e^-6	0.216	INTRON pip
2L	12498223	2L_12498223_SNP [dm3] 2L_12498223_SNP [dm6]	G	A	5.729e^-6	0.216	UPSTREAM t-cup INTRON bun
3R	10779777	3R_10779777_SNP [dm3] 3R_14954055_SNP [dm6]	C	A	6.287e^-6	0.216	INTERGENIC
3L	8164869	3L_8164869_SNP [dm3] 3L_8171769_SNP [dm6]	C	T	6.324e^-6	0.216	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6041636	3L_6041636_SNP [dm3] 3L_6048536_SNP [dm6]	A	T	6.343e^-6	0.216	INTERGENIC
3R	23990732	3R_23990732_SNP [dm3] 3R_28165010_SNP [dm6]	A	G	6.346e^-6	0.216	INTRON CG34354
3L	8164773	3L_8164773_SNP [dm3] 3L_8171673_SNP [dm6]	A	G	6.541e^-6	0.216	SPLICE_SITE_REGION RecQ4 INTRON RecQ4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12154030	2L_12154030_INS [dm3] 2L_12154030_INS [dm6]	A	AT	6.893e^-6	0.216	INTRON CG31760
2L	13916316	2L_13916316_SNP [dm3] 2L_13916316_SNP [dm6]	C	T	6.923e^-6	0.216	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13916320	2L_13916320_SNP [dm3] 2L_13916320_SNP [dm6]	G	A	6.923e^-6	0.216	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16006442	3L_16006442_INS [dm3] 3L_16013342_INS [dm6]	C	TT	6.939e^-6	0.216	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	14242892	2L_14242892_SNP [dm3] 2L_14242892_SNP [dm6]	T	C	7.326e^-6	0.216	INTERGENIC
3R	3085446	3R_3085446_DEL [dm3] 3R_7259724_DEL [dm6]	ATTGTCTTCGTT...	A	7.513e^-6	0.216	INTRON Gld
3L	1363638	3L_1363638_SNP [dm3] 3L_1363638_SNP [dm6]	A	T	7.560e^-6	0.216	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	13040943	3L_13040943_SNP [dm3] 3L_13047843_SNP [dm6]	A	G	7.576e^-6	0.216	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14242896	2L_14242896_SNP [dm3] 2L_14242896_SNP [dm6]	T	A	7.596e^-6	0.216	INTERGENIC
2L	14242898	2L_14242898_DEL [dm3] 2L_14242898_DEL [dm6]	GT	G	7.622e^-6	0.216	INTERGENIC
2L	14242914	2L_14242914_SNP [dm3] 2L_14242914_SNP [dm6]	A	T	7.921e^-6	0.216	INTERGENIC
2L	14242919	2L_14242919_DEL [dm3] 2L_14242919_DEL [dm6]	TGG	T	7.921e^-6	0.216	INTERGENIC
2L	14242891	2L_14242891_SNP [dm3] 2L_14242891_SNP [dm6]	T	G	7.973e^-6	0.216	INTERGENIC
3R	23730086	3R_23730086_SNP [dm3] 3R_27904364_SNP [dm6]	A	G	8.105e^-6	0.216	INTRON CG34353
2L	14242894	2L_14242894_SNP [dm3] 2L_14242894_SNP [dm6]	A	C	8.404e^-6	0.216	INTERGENIC
3R	7233525	3R_7233525_SNP [dm3] 3R_11407803_SNP [dm6]	A	G	8.803e^-6	0.216	UPSTREAM mRpL40 DOWNSTREAM pros & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14242903	2L_14242903_MNP [dm3] 2L_14242903_MNP [dm6]	CAC	TTG	8.812e^-6	0.216	INTERGENIC
2L	10503769	2L_10503769_SNP [dm3] 2L_10503769_SNP [dm6]	C	T	8.840e^-6	0.216	INTRON Myo31DF
2L	13916329	2L_13916329_SNP [dm3] 2L_13916329_SNP [dm6]	A	T	9.151e^-6	0.216	INTRON Ance-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6041633	3L_6041633_SNP [dm3] 3L_6048533_SNP [dm6]	C	T	9.162e^-6	0.216	INTERGENIC
3L	8176943	3L_8176943_SNP [dm3] 3L_8183843_SNP [dm6]	G	A	9.185e^-6	0.216	SYNONYMOUS_CODING ERR DOWNSTREAM CG7979	TF binding site mE1_TFBS_sens
2L	14242909	2L_14242909_MNP [dm3] 2L_14242909_MNP [dm6]	CCA	AGC	9.343e^-6	0.216	INTERGENIC
3R	2682554	3R_2682554_SNP [dm3] 3R_6856832_SNP [dm6]	A	C	9.409e^-6	0.216	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	12498235	2L_12498235_SNP [dm3] 2L_12498235_SNP [dm6]	A	G	9.536e^-6	0.216	UPSTREAM t-cup INTRON bun
2L	14242907	2L_14242907_SNP [dm3] 2L_14242907_SNP [dm6]	T	C	9.639e^-6	0.216	INTERGENIC
3R	2682635	3R_2682635_SNP [dm3] 3R_6856913_SNP [dm6]	G	A	9.733e^-6	0.216	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23305993	3R_23305993_SNP [dm3] 3R_27480271_SNP [dm6]	G	A	9.820e^-6	0.216	SYNONYMOUS_CODING Cyp6a18
2L	13734815	2L_13734815_SNP [dm3] 2L_13734815_SNP [dm6]	G	A	9.878e^-6	0.216	INTERGENIC
3L	3657270	3L_3657270_SNP [dm3] 3L_3657270_SNP [dm6]	G	C	9.985e^-6	0.216	INTERGENIC
2L	14242934	2L_14242934_SNP [dm3] 2L_14242934_SNP [dm6]	A	T	9.990e^-6	0.216	INTERGENIC
2L	14242923	2L_14242923_MNP [dm3] 2L_14242923_MNP [dm6]	ACACA	TATTT	1.011e^-5	0.216	INTERGENIC
3R	23065985	3R_23065985_SNP [dm3] 3R_27240263_SNP [dm6]	C	T	1.021e^-5	0.216	SYNONYMOUS_CODING DNApol-alpha73	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1686494	2L_1686494_SNP [dm3] 2L_1686494_SNP [dm6]	C	T	1.039e^-5	0.216	INTRON chinmo
X	12702051	X_12702051_SNP [dm3] X_12808018_SNP [dm6]	T	C	1.053e^-5	0.216	INTRON Pde9
X	9003668	X_9003668_SNP [dm3] X_9109635_SNP [dm6]	G	C	1.058e^-5	0.216	START_GAINED AP-1gamma UTR_5_PRIME AP-1gamma INTRON AP-1gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
X	14160242	X_14160242_SNP [dm3] X_14266209_SNP [dm6]	A	G	1.077e^-5	0.216	UTR_5_PRIME CG13404 UPSTREAM na DOWNSTREAM CG1461	TF binding site mE1_TFBS_chinmo
2L	12154033	2L_12154033_SNP [dm3] 2L_12154033_SNP [dm6]	C	T	1.085e^-5	0.216	INTRON CG31760
2L	12154035	2L_12154035_SNP [dm3] 2L_12154035_SNP [dm6]	C	T	1.085e^-5	0.216	INTRON CG31760
2L	12154039	2L_12154039_INS [dm3] 2L_12154039_INS [dm6]	T	AGTAC	1.085e^-5	0.216	INTRON CG31760
2L	12154044	2L_12154044_SNP [dm3] 2L_12154044_SNP [dm6]	C	A	1.085e^-5	0.216	INTRON CG31760
2L	12154045	2L_12154045_SNP [dm3] 2L_12154045_SNP [dm6]	C	T	1.085e^-5	0.216	INTRON CG31760
X	3085776	X_3085776_SNP [dm3] X_3191743_SNP [dm6]	C	G	1.094e^-5	0.216	INTRON dnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	7240052	3R_7240052_SNP [dm3] 3R_11414330_SNP [dm6]	A	G	1.144e^-5	0.22	SYNONYMOUS_CODING Ranbp9	TF binding site mE1_TFBS_cad
2L	2225660	2L_2225660_SNP [dm3] 2L_2225660_SNP [dm6]	T	A	1.150e^-5	0.22	UTR_3_PRIME CG15387 UPSTREAM rti DOWNSTREAM papi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	5317347	3L_5317347_SNP [dm3] 3L_5324247_SNP [dm6]	A	C	1.151e^-5	0.22	INTERGENIC
3L	16096641	3L_16096641_SNP [dm3] 3L_16103541_SNP [dm6]	T	G	1.160e^-5	0.22	SYNONYMOUS_CODING IntS9 DOWNSTREAM CG5414
2L	3741998	2L_3741998_SNP [dm3] 2L_3741998_SNP [dm6]	T	A	1.175e^-5	0.22	INTRON CG10019
X	12702068	X_12702068_SNP [dm3] X_12808035_SNP [dm6]	C	A	1.205e^-5	0.222	INTRON Pde9
3L	17797295	3L_17797295_SNP [dm3] 3L_17804195_SNP [dm6]	A	G	1.206e^-5	0.222	SYNONYMOUS_CODING CG5589 DOWNSTREAM CG32187	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11048760	3R_11048760_SNP [dm3] 3R_15223038_SNP [dm6]	G	T	1.222e^-5	0.222	DOWNSTREAM CG12241 & 1 other INTRON Rpb7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	14242801	2L_14242801_DEL [dm3] 2L_14242801_DEL [dm6]	CTCGTGC	C	1.239e^-5	0.223	INTERGENIC
3R	10546232	3R_10546232_SNP [dm3] 3R_14720510_SNP [dm6]	A	G	1.272e^-5	0.227	INTRON kibra	TF binding site BDTNP1_TFBS_dl
2L	1554691	2L_1554691_SNP [dm3] 2L_1554691_SNP [dm6]	C	T	1.330e^-5	0.235	UPSTREAM haf INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12154052	2L_12154052_SNP [dm3] 2L_12154052_SNP [dm6]	A	C	1.338e^-5	0.235	INTRON CG31760
X	483059	X_483059_SNP [dm3] X_589026_SNP [dm6]	C	T	1.370e^-5	0.238	INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4676227	2L_4676227_SNP [dm3] 2L_4676227_SNP [dm6]	T	C	1.384e^-5	0.238	INTERGENIC
2L	14242940	2L_14242940_SNP [dm3] 2L_14242940_SNP [dm6]	T	C	1.404e^-5	0.238	INTERGENIC
3R	23301560	3R_23301560_SNP [dm3] 3R_27475838_SNP [dm6]	G	A	1.433e^-5	0.238	INTERGENIC
3L	18338535	3L_18338535_SNP [dm3] 3L_18345435_SNP [dm6]	A	T	1.451e^-5	0.238	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	2686169	3R_2686169_SNP [dm3] 3R_6860447_SNP [dm6]	T	A	1.458e^-5	0.238	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12498245	2L_12498245_SNP [dm3] 2L_12498245_SNP [dm6]	A	G	1.460e^-5	0.238	UPSTREAM t-cup INTRON bun
3L	16006438	3L_16006438_SNP [dm3] 3L_16013338_SNP [dm6]	A	C	1.472e^-5	0.238	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	13925332	2L_13925332_SNP [dm3] 2L_13925332_SNP [dm6]	G	T	1.481e^-5	0.238	INTRON Ance-3
2L	1103472	2L_1103472_SNP [dm3] 2L_1103472_SNP [dm6]	G	A	1.488e^-5	0.238	UTR_3_PRIME mtRNApol UPSTREAM CG4629 DOWNSTREAM mtRNApol
3L	9734102	3L_9734102_SNP [dm3] 3L_9741002_SNP [dm6]	T	A	1.553e^-5	0.247	UPSTREAM CR44348 INTRON CG42268
3L	7085239	3L_7085239_INS [dm3] 3L_7092139_INS [dm6]	A	AAAAACGTGTTTGCTATCAG...	1.571e^-5	0.248	INTERGENIC
2L	4514355	2L_4514355_SNP [dm3] 2L_4514355_SNP [dm6]	G	A	1.591e^-5	0.249	INTRON dp
X	12702081	X_12702081_SNP [dm3] X_12808048_SNP [dm6]	A	T	1.605e^-5	0.249	INTRON Pde9
3R	14079330	3R_14079330_SNP [dm3] 3R_18253608_SNP [dm6]	G	A	1.648e^-5	0.252	SYNONYMOUS_CODING Ada2a UPSTREAM CG12320 INTRON Rpb4
2L	6866292	2L_6866292_SNP [dm3] 2L_6866292_SNP [dm6]	G	T	1.652e^-5	0.252	INTRON Nha1
X	19685629	X_19685629_SNP [dm3] X_19791596_SNP [dm6]	G	C	1.677e^-5	0.253	INTERGENIC
2L	12154027	2L_12154027_MNP [dm3] 2L_12154027_MNP [dm6]	AAC	TTG	1.688e^-5	0.253	INTRON CG31760
3R	12530403	3R_12530403_SNP [dm3] 3R_16704681_SNP [dm6]	T	A	1.718e^-5	0.255	INTRON Ubx	TF binding site BDTNP1_TFBS_dl
X	13835661	X_13835661_SNP [dm3] X_13941628_SNP [dm6]	G	C	1.724e^-5	0.255	INTRON mamo
3R	23305995	3R_23305995_SNP [dm3] 3R_27480273_SNP [dm6]	A	C	1.806e^-5	0.263	NON_SYNONYMOUS_CODING Cyp6a18
2L	7358831	2L_7358831_SNP [dm3] 2L_7358831_SNP [dm6]	G	T	1.810e^-5	0.263	INTERGENIC
2R	19627854	2R_19627854_SNP [dm3] 2R_23740331_SNP [dm6]	T	C	1.822e^-5	0.263	INTRON egl
2L	12154054	2L_12154054_SNP [dm3] 2L_12154054_SNP [dm6]	A	T	1.844e^-5	0.264	INTRON CG31760
2L	1693580	2L_1693580_INS [dm3] 2L_1693580_INS [dm6]	A	AGGGAAGAAAA...	1.868e^-5	0.265	INTRON chinmo
2L	1254480	2L_1254480_SNP [dm3] 2L_1254480_SNP [dm6]	C	T	1.879e^-5	0.265	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14281353	2R_14281353_SNP [dm3] 2R_18393848_SNP [dm6]	T	G	1.906e^-5	0.267	INTRON Idgf5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2711789	3R_2711789_SNP [dm3] 3R_6886067_SNP [dm6]	T	A	1.948e^-5	0.269	UPSTREAM CR44931 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12154061	2L_12154061_SNP [dm3] 2L_12154061_SNP [dm6]	A	T	1.950e^-5	0.269	INTRON CG31760
3R	7240404	3R_7240404_SNP [dm3] 3R_11414682_SNP [dm6]	G	C	2.004e^-5	0.271	INTRON Ranbp9	TF binding site mE1_TFBS_cad
2R	15451983	2R_15451983_SNP [dm3] 2R_19564478_SNP [dm6]	T	C	2.004e^-5	0.271	SYNONYMOUS_CODING sm START_GAINED sm UTR_5_PRIME sm DOWNSTREAM tRNA:CR33535 INTRON sm
2L	8369151	2L_8369151_SNP [dm3] 2L_8369151_SNP [dm6]	C	T	2.006e^-5	0.271	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2L	8622202	2L_8622202_SNP [dm3] 2L_8622202_SNP [dm6]	T	G	2.041e^-5	0.273	INTRON Sema-1a
2L	1955755	2L_1955755_SNP [dm3] 2L_1955755_SNP [dm6]	T	A	2.067e^-5	0.275	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	11523368	3L_11523368_SNP [dm3] 3L_11530268_SNP [dm6]	A	G	2.093e^-5	0.275	INTRON Mob2
2R	10309866	2R_10309866_SNP [dm3] 2R_14422361_SNP [dm6]	C	G	2.096e^-5	0.275	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15359139	2L_15359139_SNP [dm3] 2L_15359139_SNP [dm6]	C	A	2.118e^-5	0.276	INTERGENIC
2R	14281355	2R_14281355_SNP [dm3] 2R_18393850_SNP [dm6]	A	T	2.196e^-5	0.28	INTRON Idgf5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10481326	2L_10481326_SNP [dm3] 2L_10481326_SNP [dm6]	G	A	2.199e^-5	0.28	INTRON RluA-2
X	9003358	X_9003358_SNP [dm3] X_9109325_SNP [dm6]	G	A	2.212e^-5	0.28	UPSTREAM AP-1gamma DOWNSTREAM Arfrp1 INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	9003335	X_9003335_SNP [dm3] X_9109302_SNP [dm6]	A	T	2.222e^-5	0.28	UPSTREAM AP-1gamma DOWNSTREAM Arfrp1 INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	1364068	3L_1364068_INS [dm3] 3L_1364068_INS [dm6]	T	TGAG	2.237e^-5	0.28	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
3L	13165338	3L_13165338_SNP [dm3] 3L_13172238_SNP [dm6]	T	A	2.253e^-5	0.28	INTERGENIC
2L	2037441	2L_2037441_SNP [dm3] 2L_2037441_SNP [dm6]	G	A	2.260e^-5	0.28	UPSTREAM Su_dx_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	16006356	3L_16006356_SNP [dm3] 3L_16013256_SNP [dm6]	T	C	2.282e^-5	0.28	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1364004	3L_1364004_SNP [dm3] 3L_1364004_SNP [dm6]	T	A	2.321e^-5	0.28	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
2L	12154065	2L_12154065_SNP [dm3] 2L_12154065_SNP [dm6]	G	T	2.324e^-5	0.28	INTRON CG31760
2L	8542180	2L_8542180_SNP [dm3] 2L_8542180_SNP [dm6]	A	G	2.346e^-5	0.28	UTR_5_PRIME Sema-1a UPSTREAM tRNA:CR31604 DOWNSTREAM CG17834 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	16006414	3L_16006414_SNP [dm3] 3L_16013314_SNP [dm6]	C	T	2.349e^-5	0.28	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7085100	3L_7085100_SNP [dm3] 3L_7092000_SNP [dm6]	A	G	2.350e^-5	0.28	INTERGENIC
2L	5810958	2L_5810958_SNP [dm3] 2L_5810958_SNP [dm6]	A	G	2.360e^-5	0.28	UPSTREAM CG43307 DOWNSTREAM CR44575 & 1 other INTERGENIC
2L	13891112	2L_13891112_SNP [dm3] 2L_13891112_SNP [dm6]	G	A	2.391e^-5	0.281	INTRON CenG1A
3R	8099874	3R_8099874_SNP [dm3] 3R_12274152_SNP [dm6]	C	A	2.403e^-5	0.281	DOWNSTREAM Sfp87B INTRON svp
3L	11523369	3L_11523369_SNP [dm3] 3L_11530269_SNP [dm6]	C	T	2.422e^-5	0.281	INTRON Mob2
2L	8625563	2L_8625563_SNP [dm3] 2L_8625563_SNP [dm6]	T	C	2.441e^-5	0.281	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14068591	2R_14068591_SNP [dm3] 2R_18181086_SNP [dm6]	T	A	2.459e^-5	0.281	NON_SYNONYMOUS_CODING nopo UPSTREAM CG5726	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	4017136	3R_4017136_DEL [dm3] 3R_8191414_DEL [dm6]	TT	T	2.462e^-5	0.281	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	15636652	3R_15636652_SNP [dm3] 3R_19810930_SNP [dm6]	A	G	2.475e^-5	0.281	INTRON bnl
3L	7085251	3L_7085251_SNP [dm3] 3L_7092151_SNP [dm6]	G	A	2.505e^-5	0.282	INTERGENIC
3R	2916064	3R_2916064_DEL [dm3] 3R_7090342_DEL [dm6]	ACATACATA	A	2.517e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	12154023	2L_12154023_SNP [dm3] 2L_12154023_SNP [dm6]	G	A	2.533e^-5	0.282	INTRON CG31760
2L	5020348	2L_5020348_SNP [dm3] 2L_5020348_SNP [dm6]	T	C	2.560e^-5	0.282	INTRON vkg	TF binding site BDTNP1_TFBS_twi
2L	9860521	2L_9860521_SNP [dm3] 2L_9860521_SNP [dm6]	C	A	2.587e^-5	0.282	INTRON nAChRalpha6
3R	24803747	3R_24803747_DEL [dm3] 3R_28978025_DEL [dm6]	CAC	T	2.587e^-5	0.282	INTERGENIC
2L	12154013	2L_12154013_SNP [dm3] 2L_12154013_SNP [dm6]	A	T	2.595e^-5	0.282	INTRON CG31760
2L	1671342	2L_1671342_SNP [dm3] 2L_1671342_SNP [dm6]	T	G	2.597e^-5	0.282	INTRON chinmo
3L	5438622	3L_5438622_SNP [dm3] 3L_5445522_SNP [dm6]	T	C	2.632e^-5	0.284	INTERGENIC
3L	16097781	3L_16097781_SNP [dm3] 3L_16104681_SNP [dm6]	G	A	2.676e^-5	0.284	SYNONYMOUS_CODING IntS9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14975745	3R_14975745_SNP [dm3] 3R_19150023_SNP [dm6]	G	A	2.684e^-5	0.284	DOWNSTREAM CR44107 INTRON CG5835
3L	13040933	3L_13040933_SNP [dm3] 3L_13047833_SNP [dm6]	A	C	2.700e^-5	0.284	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19685165	X_19685165_SNP [dm3] X_19791132_SNP [dm6]	C	G	2.703e^-5	0.284	INTERGENIC
3R	17931846	3R_17931846_SNP [dm3] 3R_22106124_SNP [dm6]	C	A	2.740e^-5	0.284	DOWNSTREAM CG13407 INTRON CG5778
3R	23066405	3R_23066405_SNP [dm3] 3R_27240683_SNP [dm6]	C	T	2.751e^-5	0.284	SYNONYMOUS_CODING DNApol-alpha73 UPSTREAM CG17991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	14242897	2L_14242897_SNP [dm3] 2L_14242897_SNP [dm6]	T	C	2.751e^-5	0.284	INTERGENIC
3L	7085132	3L_7085132_SNP [dm3] 3L_7092032_SNP [dm6]	T	G	2.764e^-5	0.284	INTERGENIC
3R	17177235	3R_17177235_SNP [dm3] 3R_21351513_SNP [dm6]	A	T	2.786e^-5	0.284	DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1248434	3L_1248434_SNP [dm3] 3L_1248434_SNP [dm6]	C	T	2.791e^-5	0.284	SYNONYMOUS_CODING Sac1 UPSTREAM Psf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19582250	2R_19582250_SNP [dm3] 2R_23694727_SNP [dm6]	C	G	2.804e^-5	0.284	NON_SYNONYMOUS_CODING angel INTRON CG30183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7235985	3R_7235985_SNP [dm3] 3R_11410263_SNP [dm6]	T	G	2.825e^-5	0.285	SYNONYMOUS_CODING Irbp UPSTREAM snoRNA:Irbp-a & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	24021187	3R_24021187_SNP [dm3] 3R_28195465_SNP [dm6]	C	T	2.867e^-5	0.287	INTRON CG34354
2L	3741325	2L_3741325_SNP [dm3] 2L_3741325_SNP [dm6]	G	A	2.876e^-5	0.287	INTRON CG10019
3R	24632477	3R_24632477_SNP [dm3] 3R_28806755_SNP [dm6]	G	T	2.946e^-5	0.291	SYNONYMOUS_CODING CheB98a
2L	8006587	2L_8006587_SNP [dm3] 2L_8006587_SNP [dm6]	G	C	2.956e^-5	0.291	SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10309863	2R_10309863_SNP [dm3] 2R_14422358_SNP [dm6]	T	C	2.958e^-5	0.291	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12702075	X_12702075_SNP [dm3] X_12808042_SNP [dm6]	T	A	3.018e^-5	0.294	INTRON Pde9
X	12702034	X_12702034_SNP [dm3] X_12808001_SNP [dm6]	T	A	3.029e^-5	0.294	INTRON Pde9
3L	19283880	3L_19283880_SNP [dm3] 3L_19290780_SNP [dm6]	T	C	3.071e^-5	0.296	INTRON Gbs-76A
2L	8369082	2L_8369082_SNP [dm3] 2L_8369082_SNP [dm6]	A	G	3.079e^-5	0.296	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2L	12419737	2L_12419737_SNP [dm3] 2L_12419737_SNP [dm6]	T	C	3.125e^-5	0.298	INTRON vir-1
3L	1042346	3L_1042346_INS [dm3] 3L_1042346_INS [dm6]	C	CTC	3.169e^-5	0.298	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12097189	3L_12097189_SNP [dm3] 3L_12104089_SNP [dm6]	A	C	3.181e^-5	0.298	INTERGENIC
3L	6271286	3L_6271286_SNP [dm3] 3L_6278186_SNP [dm6]	C	T	3.182e^-5	0.298	INTERGENIC
2L	10481321	2L_10481321_SNP [dm3] 2L_10481321_SNP [dm6]	A	G	3.204e^-5	0.298	INTRON RluA-2
3R	17146180	3R_17146180_SNP [dm3] 3R_21320458_SNP [dm6]	T	C	3.205e^-5	0.298	UTR_3_PRIME CG16791 DOWNSTREAM CG16791
3L	4117481	3L_4117481_SNP [dm3] 3L_4117481_SNP [dm6]	G	A	3.220e^-5	0.298	INTRON Chd64
2L	8593575	2L_8593575_SNP [dm3] 2L_8593575_SNP [dm6]	A	G	3.235e^-5	0.298	INTRON Sema-1a & 1 other
3L	8166812	3L_8166812_SNP [dm3] 3L_8173712_SNP [dm6]	A	G	3.248e^-5	0.298	SYNONYMOUS_CODING RecQ4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14094273	3L_14094273_SNP [dm3] 3L_14101173_SNP [dm6]	G	A	3.269e^-5	0.298	INTERGENIC
3L	12442099	3L_12442099_SNP [dm3] 3L_12448999_SNP [dm6]	A	C	3.279e^-5	0.298	INTERGENIC
2L	12154041	2L_12154041_SNP [dm3] 2L_12154041_SNP [dm6]	A	T	3.291e^-5	0.298	INTRON CG31760
2L	1101244	2L_1101244_SNP [dm3] 2L_1101244_SNP [dm6]	T	G	3.312e^-5	0.298	INTRON CG4629
X	9003307	X_9003307_SNP [dm3] X_9109274_SNP [dm6]	C	T	3.319e^-5	0.298	UPSTREAM AP-1gamma DOWNSTREAM Arfrp1 INTRON AP-1gamma	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	6277057	2L_6277057_SNP [dm3] 2L_6277057_SNP [dm6]	A	T	3.359e^-5	0.299	INTRON Ddr
2L	12153944	2L_12153944_SNP [dm3] 2L_12153944_SNP [dm6]	G	A	3.384e^-5	0.299	SYNONYMOUS_CODING CG31760
2L	8631309	2L_8631309_DEL [dm3] 2L_8631309_DEL [dm6]	AA	G	3.385e^-5	0.299	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9739527	3L_9739527_SNP [dm3] 3L_9746427_SNP [dm6]	A	T	3.417e^-5	0.3	INTRON CG42268
3R	7360188	3R_7360188_SNP [dm3] 3R_11534466_SNP [dm6]	C	G	3.422e^-5	0.3	UTR_3_PRIME dpr4
X	12702118	X_12702118_SNP [dm3] X_12808085_SNP [dm6]	T	G	3.435e^-5	0.3	INTRON Pde9
2L	14240757	2L_14240757_SNP [dm3] 2L_14240757_SNP [dm6]	T	C	3.457e^-5	0.3	UPSTREAM CR44216 INTERGENIC
2L	12402089	2L_12402089_SNP [dm3] 2L_12402089_SNP [dm6]	A	G	3.488e^-5	0.302	DOWNSTREAM Pkd2 INTERGENIC
2L	4676347	2L_4676347_SNP [dm3] 2L_4676347_SNP [dm6]	G	C	3.504e^-5	0.302	INTERGENIC
3L	13682903	3L_13682903_SNP [dm3] 3L_13689803_SNP [dm6]	C	T	3.600e^-5	0.308	INTRON bru-3
3L	19322260	3L_19322260_SNP [dm3] 3L_19329160_SNP [dm6]	T	A	3.625e^-5	0.309	INTRON pip
3R	23066192	3R_23066192_SNP [dm3] 3R_27240470_SNP [dm6]	A	T	3.663e^-5	0.311	SYNONYMOUS_CODING DNApol-alpha73 UPSTREAM CG17991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17527288	3R_17527288_DEL [dm3] 3R_21701566_DEL [dm6]	AA	A	3.714e^-5	0.311	INTRON CG31176
3L	6041672	3L_6041672_SNP [dm3] 3L_6048572_SNP [dm6]	A	G	3.730e^-5	0.311	INTERGENIC
X	12702072	X_12702072_SNP [dm3] X_12808039_SNP [dm6]	T	A	3.734e^-5	0.311	INTRON Pde9
2L	4928840	2L_4928840_SNP [dm3] 2L_4928840_SNP [dm6]	T	G	3.759e^-5	0.311	UPSTREAM hoe1 INTRON hoe1
3R	23990561	3R_23990561_SNP [dm3] 3R_28164839_SNP [dm6]	G	T	3.762e^-5	0.311	INTRON CG34354
2L	1482123	2L_1482123_SNP [dm3] 2L_1482123_SNP [dm6]	G	A	3.769e^-5	0.311	INTERGENIC
3L	8160417	3L_8160417_SNP [dm3] 3L_8167317_SNP [dm6]	C	T	3.779e^-5	0.311	INTERGENIC
3R	11022817	3R_11022817_SNP [dm3] 3R_15197095_SNP [dm6]	A	C	3.793e^-5	0.311	UTR_5_PRIME CG42542 UPSTREAM CG6752 INTRON CG42542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
3L	9895594	3L_9895594_SNP [dm3] 3L_9902494_SNP [dm6]	T	A	3.820e^-5	0.311	UTR_3_PRIME nudE DOWNSTREAM nudE
3R	20041291	3R_20041291_INS [dm3] 3R_24215569_INS [dm6]	T	TT	3.840e^-5	0.311	UTR_3_PRIME CG17786 INTRON twin
3R	2868745	3R_2868745_SNP [dm3] 3R_7043023_SNP [dm6]	A	G	3.854e^-5	0.311	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10455014	2R_10455014_SNP [dm3] 2R_14567509_SNP [dm6]	G	A	3.862e^-5	0.311	INTRON ttv
2R	19380145	2R_19380145_SNP [dm3] 2R_23492622_SNP [dm6]	C	G	3.882e^-5	0.311	DOWNSTREAM CG43795 INTERGENIC
2R	12298353	2R_12298353_SNP [dm3] 2R_16410848_SNP [dm6]	G	C	3.953e^-5	0.315	INTRON Sema-2b
2L	1484377	2L_1484377_SNP [dm3] 2L_1484377_SNP [dm6]	G	C	3.981e^-5	0.315	INTERGENIC
2R	6557364	2R_6557364_SNP [dm3] 2R_10669859_SNP [dm6]	T	A	3.993e^-5	0.315	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6321903	2R_6321903_SNP [dm3] 2R_10434398_SNP [dm6]	C	G	4.001e^-5	0.315	INTRON RanBPM
2L	2062756	2L_2062756_SNP [dm3] 2L_2062756_SNP [dm6]	T	C	4.051e^-5	0.318	INTRON dpr3	TF binding site mE1_TFBS_chinmo
3R	2942976	3R_2942976_SNP [dm3] 3R_7117254_SNP [dm6]	A	T	4.080e^-5	0.318	UPSTREAM Mlp84B INTRON Alh & 1 other	TF binding site mE1_TFBS_HSA
2L	8612630	2L_8612630_SNP [dm3] 2L_8612630_SNP [dm6]	G	C	4.089e^-5	0.318	INTRON Sema-1a
2R	14079409	2R_14079409_SNP [dm3] 2R_18191904_SNP [dm6]	G	A	4.099e^-5	0.318	INTRON CG33958
3L	3150171	3L_3150171_SNP [dm3] 3L_3150171_SNP [dm6]	G	A	4.215e^-5	0.325	INTRON BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2L	1101242	2L_1101242_SNP [dm3] 2L_1101242_SNP [dm6]	C	G	4.233e^-5	0.325	INTRON CG4629
2L	1101273	2L_1101273_SNP [dm3] 2L_1101273_SNP [dm6]	G	T	4.252e^-5	0.325	INTRON CG4629
3L	16091882	3L_16091882_SNP [dm3] 3L_16098782_SNP [dm6]	G	A	4.284e^-5	0.325	SYNONYMOUS_CODING ms_3_72Dt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4676298	2L_4676298_SNP [dm3] 2L_4676298_SNP [dm6]	A	T	4.302e^-5	0.325	INTERGENIC
2R	14082575	2R_14082575_SNP [dm3] 2R_18195070_SNP [dm6]	G	T	4.349e^-5	0.325	INTERGENIC
2L	13838319	2L_13838319_SNP [dm3] 2L_13838319_SNP [dm6]	G	C	4.367e^-5	0.325	DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20883490	2L_20883490_SNP [dm3] 2L_20883490_SNP [dm6]	A	G	4.409e^-5	0.325	INTRON sky & 1 other
3L	7085101	3L_7085101_SNP [dm3] 3L_7092001_SNP [dm6]	A	T	4.457e^-5	0.325	INTERGENIC
3R	11077238	3R_11077238_SNP [dm3] 3R_15251516_SNP [dm6]	A	G	4.464e^-5	0.325	INTRON CG42404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1484148	2L_1484148_SNP [dm3] 2L_1484148_SNP [dm6]	C	A	4.476e^-5	0.325	INTERGENIC
3L	9743764	3L_9743764_DEL [dm3] 3L_9750664_DEL [dm6]	AC	A	4.523e^-5	0.325	INTRON CG42268
3R	10262655	3R_10262655_SNP [dm3] 3R_14436933_SNP [dm6]	G	C	4.545e^-5	0.325	INTRON cv-c
3L	6822744	3L_6822744_SNP [dm3] 3L_6829644_SNP [dm6]	G	A	4.556e^-5	0.325	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6321907	2R_6321907_SNP [dm3] 2R_10434402_SNP [dm6]	C	T	4.574e^-5	0.325	INTRON RanBPM
2L	1101037	2L_1101037_SNP [dm3] 2L_1101037_SNP [dm6]	G	A	4.577e^-5	0.325	INTRON CG4629
2L	9048671	2L_9048671_SNP [dm3] 2L_9048671_SNP [dm6]	C	T	4.595e^-5	0.325	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9130862	2L_9130862_SNP [dm3] 2L_9130862_SNP [dm6]	C	T	4.610e^-5	0.325	INTRON CG32982
2L	8576256	2L_8576256_SNP [dm3] 2L_8576256_SNP [dm6]	T	A	4.648e^-5	0.325	INTRON Sema-1a
X	12702071	X_12702071_SNP [dm3] X_12808038_SNP [dm6]	G	A	4.654e^-5	0.325	INTRON Pde9
3L	16006529	3L_16006529_SNP [dm3] 3L_16013429_SNP [dm6]	G	C	4.693e^-5	0.325	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
2R	10453192	2R_10453192_SNP [dm3] 2R_14565687_SNP [dm6]	G	T	4.701e^-5	0.325	INTRON ttv
2R	10455831	2R_10455831_SNP [dm3] 2R_14568326_SNP [dm6]	T	C	4.701e^-5	0.325	INTRON ttv
2L	18304685	2L_18304685_SNP [dm3] 2L_18304685_SNP [dm6]	C	A	4.707e^-5	0.325	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	1689863	2L_1689863_SNP [dm3] 2L_1689863_SNP [dm6]	C	A	4.712e^-5	0.325	INTRON chinmo
X	9003434	X_9003434_SNP [dm3] X_9109401_SNP [dm6]	A	T	4.715e^-5	0.325	UPSTREAM AP-1gamma INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	4620889	3L_4620889_SNP [dm3] 3L_4620889_SNP [dm6]	C	T	4.731e^-5	0.325	UPSTREAM CG32246 INTRON Src64B	TF binding site mE1_TFBS_HSA
3R	2678667	3R_2678667_SNP [dm3] 3R_6852945_SNP [dm6]	A	G	4.760e^-5	0.325	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26480417	3R_26480417_SNP [dm3] 3R_30654695_SNP [dm6]	G	A	4.821e^-5	0.325	INTERGENIC
2L	1483544	2L_1483544_SNP [dm3] 2L_1483544_SNP [dm6]	G	T	4.822e^-5	0.325	INTERGENIC
3R	2849111	3R_2849111_SNP [dm3] 3R_7023389_SNP [dm6]	C	T	4.880e^-5	0.325	INTERGENIC
2R	10456222	2R_10456222_INS [dm3] 2R_14568717_INS [dm6]	T	TGAGAAATT	4.884e^-5	0.325	INTRON ttv
2L	1307545	2L_1307545_SNP [dm3] 2L_1307545_SNP [dm6]	T	C	4.902e^-5	0.325	INTERGENIC
3R	11022760	3R_11022760_SNP [dm3] 3R_15197038_SNP [dm6]	A	T	4.903e^-5	0.325	UTR_5_PRIME CG42542 UPSTREAM CG6752 INTRON CG42542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
2R	12294255	2R_12294255_SNP [dm3] 2R_16406750_SNP [dm6]	T	A	4.914e^-5	0.325	INTRON Sema-2b
2L	1296829	2L_1296829_SNP [dm3] 2L_1296829_SNP [dm6]	G	A	4.934e^-5	0.325	DOWNSTREAM robo3 INTERGENIC
3L	19439964	3L_19439964_SNP [dm3] 3L_19446864_SNP [dm6]	G	A	4.935e^-5	0.325	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8166510	3L_8166510_SNP [dm3] 3L_8173410_SNP [dm6]	A	G	4.975e^-5	0.325	SYNONYMOUS_CODING RecQ4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19685521	X_19685521_SNP [dm3] X_19791488_SNP [dm6]	A	G	4.977e^-5	0.325	INTERGENIC
2L	9171160	2L_9171160_INS [dm3] 2L_9171160_INS [dm6]	A	AA	5.016e^-5	0.325	INTRON tai
3L	16006358	3L_16006358_SNP [dm3] 3L_16013258_SNP [dm6]	G	T	5.065e^-5	0.325	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12284127	3L_12284127_SNP [dm3] 3L_12291027_SNP [dm6]	C	T	5.074e^-5	0.325	UTR_3_PRIME CG4328 UPSTREAM CR45658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16090674	3L_16090674_SNP [dm3] 3L_16097574_SNP [dm6]	A	T	5.087e^-5	0.325	UPSTREAM ms_3_72Dt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	10555991	3R_10555991_SNP [dm3] 3R_14730269_SNP [dm6]	A	C	5.107e^-5	0.325	INTRON CG7530
2R	10456292	2R_10456292_SNP [dm3] 2R_14568787_SNP [dm6]	G	T	5.166e^-5	0.325	INTRON ttv	TF binding site mE1_TFBS_sbb
3L	1387857	3L_1387857_SNP [dm3] 3L_1387857_SNP [dm6]	A	T	5.174e^-5	0.325	DOWNSTREAM ru INTRON Ptp61F
X	9766755	X_9766755_SNP [dm3] X_9872722_SNP [dm6]	G	A	5.180e^-5	0.325	UTR_3_PRIME CG32695 DOWNSTREAM CG32695
2R	14078287	2R_14078287_SNP [dm3] 2R_18190782_SNP [dm6]	T	G	5.191e^-5	0.325	INTRON CG33958
2L	12154063	2L_12154063_SNP [dm3] 2L_12154063_SNP [dm6]	G	T	5.207e^-5	0.325	INTRON CG31760
3L	1781710	3L_1781710_SNP [dm3] 3L_1781710_SNP [dm6]	A	G	5.212e^-5	0.325	INTRON alpha-Spec	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7397515	3R_7397515_SNP [dm3] 3R_11571793_SNP [dm6]	G	A	5.229e^-5	0.325	SYNONYMOUS_CODING Mrp4	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10546244	3R_10546244_INS [dm3] 3R_14720522_INS [dm6]	A	AA	5.231e^-5	0.325	INTRON kibra	TF binding site BDTNP1_TFBS_dl
3R	27587470	3R_27587470_SNP [dm3] 3R_31761748_SNP [dm6]	G	A	5.254e^-5	0.325	UPSTREAM Smvt INTERGENIC
2L	8979833	2L_8979833_SNP [dm3] 2L_8979833_SNP [dm6]	C	A	5.274e^-5	0.325	UPSTREAM CG18662 INTRON CG13101
2L	3851589	2L_3851589_SNP [dm3] 2L_3851589_SNP [dm6]	G	C	5.288e^-5	0.325	UPSTREAM CR45451 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	1540013	2L_1540013_SNP [dm3] 2L_1540013_SNP [dm6]	T	C	5.310e^-5	0.325	INTERGENIC
3L	18276396	3L_18276396_SNP [dm3] 3L_18283296_SNP [dm6]	G	C	5.319e^-5	0.325	INTERGENIC
3R	2933687	3R_2933687_SNP [dm3] 3R_7107965_SNP [dm6]	T	A	5.341e^-5	0.325	START_GAINED Alh UTR_5_PRIME Alh INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D
2L	8961539	2L_8961539_SNP [dm3] 2L_8961539_SNP [dm6]	A	G	5.343e^-5	0.325	SYNONYMOUS_CODING CG9525 UPSTREAM CG32985	TF binding site mE1_TFBS_HSA
2R	19380381	2R_19380381_SNP [dm3] 2R_23492858_SNP [dm6]	G	C	5.345e^-5	0.325	DOWNSTREAM CG43795 INTERGENIC
3R	7236266	3R_7236266_SNP [dm3] 3R_11410544_SNP [dm6]	C	T	5.403e^-5	0.325	NON_SYNONYMOUS_CODING Irbp UPSTREAM snoRNA:Irbp-a & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	6045262	3L_6045262_SNP [dm3] 3L_6052162_SNP [dm6]	C	G	5.451e^-5	0.325	UPSTREAM Jon65Aii DOWNSTREAM Jon65Aiii INTERGENIC
2L	1477582	2L_1477582_SNP [dm3] 2L_1477582_SNP [dm6]	A	T	5.454e^-5	0.325	INTERGENIC
2L	1483197	2L_1483197_SNP [dm3] 2L_1483197_SNP [dm6]	C	T	5.454e^-5	0.325	INTERGENIC
2L	1487191	2L_1487191_SNP [dm3] 2L_1487191_SNP [dm6]	C	A	5.466e^-5	0.325	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24646625	3R_24646625_SNP [dm3] 3R_28820903_SNP [dm6]	C	T	5.502e^-5	0.325	NON_SYNONYMOUS_CODING CG1647
2R	19380218	2R_19380218_SNP [dm3] 2R_23492695_SNP [dm6]	G	A	5.508e^-5	0.325	DOWNSTREAM CG43795 INTERGENIC
2L	1307590	2L_1307590_SNP [dm3] 2L_1307590_SNP [dm6]	C	A	5.509e^-5	0.325	INTERGENIC
3L	15201196	3L_15201196_SNP [dm3] 3L_15208096_SNP [dm6]	T	C	5.519e^-5	0.325	SYNONYMOUS_CODING CG6888	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12262653	2L_12262653_SNP [dm3] 2L_12262653_SNP [dm6]	A	C	5.537e^-5	0.325	INTRON aret
3L	16006355	3L_16006355_SNP [dm3] 3L_16013255_SNP [dm6]	T	A	5.572e^-5	0.325	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14240682	2L_14240682_SNP [dm3] 2L_14240682_SNP [dm6]	G	T	5.607e^-5	0.325	UPSTREAM CR44216 INTERGENIC
X	15261343	X_15261343_SNP [dm3] X_15367310_SNP [dm6]	G	A	5.615e^-5	0.325	INTRON acj6
3R	19123341	3R_19123341_SNP [dm3] 3R_23297619_SNP [dm6]	T	G	5.617e^-5	0.325	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	1101276	2L_1101276_SNP [dm3] 2L_1101276_SNP [dm6]	G	A	5.619e^-5	0.325	INTRON CG4629
3R	10187071	3R_10187071_SNP [dm3] 3R_14361349_SNP [dm6]	C	A	5.642e^-5	0.325	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2793665	3R_2793665_SNP [dm3] 3R_6967943_SNP [dm6]	A	C	5.643e^-5	0.325	INTRON Antp
2L	7195655	2L_7195655_SNP [dm3] 2L_7195655_SNP [dm6]	C	G	5.644e^-5	0.325	INTRON CG4502	TF binding site mE1_TFBS_sens
3L	7745570	3L_7745570_SNP [dm3] 3L_7752470_SNP [dm6]	T	G	5.650e^-5	0.325	INTRON CG32373	TF binding site BDTNP1_TFBS_sna
3L	9733864	3L_9733864_SNP [dm3] 3L_9740764_SNP [dm6]	G	T	5.655e^-5	0.325	UPSTREAM CR44348 INTRON CG42268
2L	1497069	2L_1497069_SNP [dm3] 2L_1497069_SNP [dm6]	T	A	5.665e^-5	0.325	UTR_3_PRIME CG31926 UPSTREAM CG31661
2L	1497090	2L_1497090_SNP [dm3] 2L_1497090_SNP [dm6]	A	G	5.665e^-5	0.325	UPSTREAM CG31661 DOWNSTREAM CG31926 INTERGENIC
3L	16006390	3L_16006390_DEL [dm3] 3L_16013290_DEL [dm6]	TTT	A	5.686e^-5	0.325	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14154074	X_14154074_SNP [dm3] X_14260041_SNP [dm6]	T	C	5.700e^-5	0.325	INTERGENIC
3R	10060523	3R_10060523_SNP [dm3] 3R_14234801_SNP [dm6]	A	G	5.701e^-5	0.325	INTERGENIC
3R	25349377	3R_25349377_SNP [dm3] 3R_29523655_SNP [dm6]	A	T	5.704e^-5	0.325	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16100585	3L_16100585_SNP [dm3] 3L_16107485_SNP [dm6]	C	T	5.714e^-5	0.325	SYNONYMOUS_CODING Zn72D UTR_3_PRIME Zn72D
3R	2949829	3R_2949829_SNP [dm3] 3R_7124107_SNP [dm6]	T	G	5.721e^-5	0.325	UTR_5_PRIME Alh UPSTREAM CG10098 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17479239	2R_17479239_SNP [dm3] 2R_21591734_SNP [dm6]	G	A	5.750e^-5	0.325	DOWNSTREAM CG33225 INTERGENIC
3R	2711605	3R_2711605_SNP [dm3] 3R_6885883_SNP [dm6]	A	T	5.751e^-5	0.325	UPSTREAM CR44931 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19388294	2R_19388294_SNP [dm3] 2R_23500771_SNP [dm6]	A	T	5.773e^-5	0.325	DOWNSTREAM CG13558 INTERGENIC
3R	24649563	3R_24649563_SNP [dm3] 3R_28823841_SNP [dm6]	A	G	5.822e^-5	0.327	NON_SYNONYMOUS_CODING CG1647 DOWNSTREAM WASp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16006398	3L_16006398_DEL [dm3] 3L_16013298_DEL [dm6]	ATATATAA	A	5.834e^-5	0.327	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10113625	X_10113625_SNP [dm3] X_10219592_SNP [dm6]	A	T	5.863e^-5	0.327	UPSTREAM CG34408 & 1 other DOWNSTREAM CR45629 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9734766	3L_9734766_SNP [dm3] 3L_9741666_SNP [dm6]	G	A	5.873e^-5	0.327	INTRON CG42268 & 1 other
2L	14537288	2L_14537288_SNP [dm3] 2L_14537288_SNP [dm6]	T	A	5.910e^-5	0.328	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7323948	2R_7323948_SNP [dm3] 2R_11436443_SNP [dm6]	G	T	5.932e^-5	0.328	INTRON CG7777
3R	15637840	3R_15637840_SNP [dm3] 3R_19812118_SNP [dm6]	C	T	5.954e^-5	0.328	INTRON bnl
2L	12154058	2L_12154058_SNP [dm3] 2L_12154058_SNP [dm6]	C	A	5.971e^-5	0.328	INTRON CG31760
2L	13752603	2L_13752603_SNP [dm3] 2L_13752603_SNP [dm6]	G	T	5.972e^-5	0.328	INTRON CR44846 & 1 other
2L	4676219	2L_4676219_SNP [dm3] 2L_4676219_SNP [dm6]	A	T	6.055e^-5	0.33	INTERGENIC
X	18900858	X_18900858_SNP [dm3] X_19006825_SNP [dm6]	G	A	6.075e^-5	0.33	INTRON CG43759
3L	16006494	3L_16006494_MNP [dm3] 3L_16013394_MNP [dm6]	CCC	ATA	6.091e^-5	0.33	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	19685291	X_19685291_SNP [dm3] X_19791258_SNP [dm6]	T	C	6.091e^-5	0.33	INTERGENIC
3L	18545901	3L_18545901_SNP [dm3] 3L_18552801_SNP [dm6]	T	C	6.116e^-5	0.33	INTERGENIC
2L	8615194	2L_8615194_SNP [dm3] 2L_8615194_SNP [dm6]	G	A	6.118e^-5	0.33	INTRON Sema-1a
3R	5997529	3R_5997529_SNP [dm3] 3R_10171807_SNP [dm6]	G	T	6.153e^-5	0.331	UTR_3_PRIME CG12814 INTRON CG12814
2L	1497436	2L_1497436_SNP [dm3] 2L_1497436_SNP [dm6]	G	A	6.169e^-5	0.331	SYNONYMOUS_CODING CG31661 DOWNSTREAM CG31926	TF binding site mE1_TFBS_HSA
3R	14079438	3R_14079438_SNP [dm3] 3R_18253716_SNP [dm6]	A	G	6.213e^-5	0.331	SYNONYMOUS_CODING Ada2a UPSTREAM CG12320 INTRON Rpb4
3R	7521768	3R_7521768_SNP [dm3] 3R_11696046_SNP [dm6]	A	C	6.220e^-5	0.331	UPSTREAM CG14717 INTERGENIC
3R	19813100	3R_19813100_SNP [dm3] 3R_23987378_SNP [dm6]	C	G	6.228e^-5	0.331	START_GAINED CG5902 UTR_5_PRIME CG5902 UPSTREAM CG13603	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	12710812	3R_12710812_SNP [dm3] 3R_16885090_SNP [dm6]	C	T	6.283e^-5	0.333	INTRON iab-8
2L	13108371	2L_13108371_SNP [dm3] 2L_13108371_SNP [dm6]	T	C	6.384e^-5	0.333	INTRON CG5142
3R	20167514	3R_20167514_SNP [dm3] 3R_24341792_SNP [dm6]	C	A	6.391e^-5	0.333	UPSTREAM Ms INTRON Ms	TF binding site mE1_TFBS_cad
2R	11868876	2R_11868876_SNP [dm3] 2R_15981371_SNP [dm6]	T	C	6.399e^-5	0.333	SYNONYMOUS_CODING Strn-Mlck
X	9003272	X_9003272_SNP [dm3] X_9109239_SNP [dm6]	T	C	6.404e^-5	0.333	UPSTREAM AP-1gamma DOWNSTREAM Arfrp1 INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	7237957	3R_7237957_SNP [dm3] 3R_11412235_SNP [dm6]	A	C	6.423e^-5	0.333	NON_SYNONYMOUS_CODING Irbp UTR_3_PRIME Irbp UPSTREAM Ranbp9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9249971	2L_9249971_SNP [dm3] 2L_9249971_SNP [dm6]	C	T	6.457e^-5	0.333	UTR_3_PRIME tai DOWNSTREAM aust
3L	4611702	3L_4611702_DEL [dm3] 3L_4611702_DEL [dm6]	AG	A	6.457e^-5	0.333	INTRON Src64B	TF binding site BDTNP1_TFBS_twi
3L	20059817	3L_20059817_SNP [dm3] 3L_20066717_SNP [dm6]	T	G	6.457e^-5	0.333	INTRON sNPF-R
3L	9738644	3L_9738644_SNP [dm3] 3L_9745544_SNP [dm6]	T	A	6.483e^-5	0.333	INTRON CG42268
2L	10480825	2L_10480825_SNP [dm3] 2L_10480825_SNP [dm6]	C	A	6.504e^-5	0.333	INTRON RluA-2	TF binding site mE1_TFBS_HSA
2L	9583376	2L_9583376_SNP [dm3] 2L_9583376_SNP [dm6]	C	T	6.504e^-5	0.333	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1679007	2L_1679007_SNP [dm3] 2L_1679007_SNP [dm6]	G	T	6.515e^-5	0.333	INTRON chinmo
2L	1496990	2L_1496990_SNP [dm3] 2L_1496990_SNP [dm6]	C	T	6.518e^-5	0.333	UTR_3_PRIME CG31926 UPSTREAM CG31661
2L	18303714	2L_18303714_SNP [dm3] 2L_18303714_SNP [dm6]	C	T	6.543e^-5	0.333	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1943883	3L_1943883_SNP [dm3] 3L_1943883_SNP [dm6]	C	T	6.580e^-5	0.333	NON_SYNONYMOUS_CODING mu2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1298717	2L_1298717_SNP [dm3] 2L_1298717_SNP [dm6]	G	A	6.600e^-5	0.333	INTERGENIC
2L	1298784	2L_1298784_SNP [dm3] 2L_1298784_SNP [dm6]	G	T	6.600e^-5	0.333	INTERGENIC
3L	16006621	3L_16006621_SNP [dm3] 3L_16013521_SNP [dm6]	A	C	6.609e^-5	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	17707698	3L_17707698_SNP [dm3] 3L_17714598_SNP [dm6]	A	G	6.614e^-5	0.333	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2L	1702459	2L_1702459_SNP [dm3] 2L_1702459_SNP [dm6]	G	C	6.693e^-5	0.333	UTR_3_PRIME chinmo
2L	1690423	2L_1690423_SNP [dm3] 2L_1690423_SNP [dm6]	G	A	6.706e^-5	0.333	UTR_5_PRIME chinmo
3L	16006520	3L_16006520_SNP [dm3] 3L_16013420_SNP [dm6]	G	A	6.715e^-5	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3L	16006498	3L_16006498_SNP [dm3] 3L_16013398_SNP [dm6]	A	C	6.732e^-5	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	13716085	2R_13716085_SNP [dm3] 2R_17828580_SNP [dm6]	G	A	6.758e^-5	0.333	INTRON grh
3L	16093354	3L_16093354_SNP [dm3] 3L_16100254_SNP [dm6]	T	C	6.777e^-5	0.333	UPSTREAM CG5414 DOWNSTREAM ms_3_72Dt INTERGENIC
3L	1363632	3L_1363632_DEL [dm3] 3L_1363632_DEL [dm6]	CC	C	6.800e^-5	0.333	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4676222	2L_4676222_INS [dm3] 2L_4676222_INS [dm6]	T	TAGAAATCAT	6.817e^-5	0.333	INTERGENIC
2R	11306728	2R_11306728_SNP [dm3] 2R_15419223_SNP [dm6]	T	C	6.832e^-5	0.333	INTRON CG43729
2L	1296852	2L_1296852_SNP [dm3] 2L_1296852_SNP [dm6]	G	A	6.852e^-5	0.333	DOWNSTREAM robo3 INTERGENIC
2L	1700279	2L_1700279_SNP [dm3] 2L_1700279_SNP [dm6]	T	C	6.874e^-5	0.333	UTR_3_PRIME chinmo
2R	10456260	2R_10456260_SNP [dm3] 2R_14568755_SNP [dm6]	G	A	6.877e^-5	0.333	INTRON ttv
3L	16006512	3L_16006512_SNP [dm3] 3L_16013412_SNP [dm6]	A	T	6.880e^-5	0.333	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	4676308	2L_4676308_SNP [dm3] 2L_4676308_SNP [dm6]	C	A	6.905e^-5	0.333	INTERGENIC
2R	19626204	2R_19626204_SNP [dm3] 2R_23738681_SNP [dm6]	G	A	6.906e^-5	0.333	SYNONYMOUS_CODING egl	TF binding site mE1_TFBS_chinmo
2L	1274883	2L_1274883_SNP [dm3] 2L_1274883_SNP [dm6]	G	T	6.912e^-5	0.333	INTRON robo3
3R	12710802	3R_12710802_SNP [dm3] 3R_16885080_SNP [dm6]	C	A	6.940e^-5	0.333	INTRON iab-8
3L	6041596	3L_6041596_SNP [dm3] 3L_6048496_SNP [dm6]	C	T	6.960e^-5	0.333	INTERGENIC
3L	6037239	3L_6037239_SNP [dm3] 3L_6044139_SNP [dm6]	C	G	6.962e^-5	0.333	INTERGENIC
3L	7085090	3L_7085090_SNP [dm3] 3L_7091990_SNP [dm6]	C	A	6.999e^-5	0.334	INTERGENIC
3L	9746914	3L_9746914_SNP [dm3] 3L_9753814_SNP [dm6]	C	T	7.039e^-5	0.334	INTRON CG42268
2L	2098704	2L_2098704_SNP [dm3] 2L_2098704_SNP [dm6]	A	G	7.047e^-5	0.334	INTRON dpr3
2R	19390102	2R_19390102_SNP [dm3] 2R_23502579_SNP [dm6]	G	T	7.054e^-5	0.334	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23142901	3R_23142901_SNP [dm3] 3R_27317179_SNP [dm6]	G	T	7.063e^-5	0.334	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	18815610	2R_18815610_SNP [dm3] 2R_22928087_SNP [dm6]	A	C	7.085e^-5	0.334	UTR_3_PRIME CG42678 UPSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_cad
X	16289928	X_16289928_SNP [dm3] X_16395895_SNP [dm6]	T	C	7.147e^-5	0.335	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
2L	9012997	2L_9012997_SNP [dm3] 2L_9012997_SNP [dm6]	A	C	7.167e^-5	0.335	UTR_3_PRIME CG13102 & 1 other DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10034815	2R_10034815_SNP [dm3] 2R_14147310_SNP [dm6]	G	T	7.167e^-5	0.335	DOWNSTREAM Rcd1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9739526	3L_9739526_SNP [dm3] 3L_9746426_SNP [dm6]	G	A	7.181e^-5	0.335	INTRON CG42268
3R	13429902	3R_13429902_SNP [dm3] 3R_17604180_SNP [dm6]	A	G	7.198e^-5	0.335	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	7357838	3R_7357838_SNP [dm3] 3R_11532116_SNP [dm6]	T	A	7.207e^-5	0.335	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23066240	3R_23066240_SNP [dm3] 3R_27240518_SNP [dm6]	C	T	7.251e^-5	0.336	SYNONYMOUS_CODING DNApol-alpha73 UPSTREAM CG17991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11524342	3L_11524342_DEL [dm3] 3L_11531242_DEL [dm6]	ATA	A	7.290e^-5	0.337	INTRON Mob2
2R	10456258	2R_10456258_SNP [dm3] 2R_14568753_SNP [dm6]	C	A	7.345e^-5	0.338	INTRON ttv
2R	12293616	2R_12293616_SNP [dm3] 2R_16406111_SNP [dm6]	G	A	7.357e^-5	0.338	INTRON Sema-2b
2L	1664397	2L_1664397_SNP [dm3] 2L_1664397_SNP [dm6]	A	G	7.360e^-5	0.338	INTRON chinmo
2L	12154018	2L_12154018_SNP [dm3] 2L_12154018_SNP [dm6]	T	A	7.432e^-5	0.338	INTRON CG31760
2L	1272557	2L_1272557_SNP [dm3] 2L_1272557_SNP [dm6]	G	C	7.443e^-5	0.338	INTRON robo3
2L	1616644	2L_1616644_SNP [dm3] 2L_1616644_SNP [dm6]	G	A	7.452e^-5	0.338	INTERGENIC
2L	1616709	2L_1616709_SNP [dm3] 2L_1616709_SNP [dm6]	G	C	7.457e^-5	0.338	INTERGENIC
3L	6271421	3L_6271421_SNP [dm3] 3L_6278321_SNP [dm6]	G	T	7.471e^-5	0.338	INTERGENIC
3L	2800701	3L_2800701_SNP [dm3] 3L_2800701_SNP [dm6]	T	A	7.474e^-5	0.338	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1484973	2L_1484973_SNP [dm3] 2L_1484973_SNP [dm6]	C	T	7.486e^-5	0.338	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1260163	2L_1260163_SNP [dm3] 2L_1260163_SNP [dm6]	A	G	7.535e^-5	0.338	INTRON robo3
2L	1755887	2L_1755887_SNP [dm3] 2L_1755887_SNP [dm6]	T	A	7.542e^-5	0.338	NON_SYNONYMOUS_CODING Gr22f	TF binding site BDTNP1_TFBS_twi
3L	16006525	3L_16006525_SNP [dm3] 3L_16013425_SNP [dm6]	T	A	7.577e^-5	0.339	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3L	11387687	3L_11387687_DEL [dm3] 3L_11394587_DEL [dm6]	TT	A	7.596e^-5	0.339	UPSTREAM CG11726 INTERGENIC
2R	13716068	2R_13716068_SNP [dm3] 2R_17828563_SNP [dm6]	T	A	7.623e^-5	0.339	INTRON grh
2R	13961322	2R_13961322_SNP [dm3] 2R_18073817_SNP [dm6]	T	C	7.640e^-5	0.339	UPSTREAM CR45022 INTRON CG34386
2L	1691086	2L_1691086_SNP [dm3] 2L_1691086_SNP [dm6]	C	A	7.669e^-5	0.339	INTRON chinmo
3L	9734760	3L_9734760_MNP [dm3] 3L_9741660_MNP [dm6]	TCG	ATA	7.670e^-5	0.339	INTRON CG42268 & 1 other
X	22309542	X_22309542_SNP [dm3] X_22907706_SNP [dm6]	C	T	7.715e^-5	0.339	INTERGENIC	transposable element FlyBase
2L	3945628	2L_3945628_SNP [dm3] 2L_3945628_SNP [dm6]	T	G	7.724e^-5	0.339	INTRON fred
2L	1686985	2L_1686985_SNP [dm3] 2L_1686985_SNP [dm6]	A	T	7.730e^-5	0.339	INTRON chinmo
3R	20743493	3R_20743493_SNP [dm3] 3R_24917771_SNP [dm6]	T	C	7.756e^-5	0.339	UTR_5_PRIME PIG-S & 1 other UPSTREAM CG11168	TF binding site mE1_TFBS_cad
3L	9742246	3L_9742246_SNP [dm3] 3L_9749146_SNP [dm6]	C	T	7.796e^-5	0.339	INTRON CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23990158	3R_23990158_SNP [dm3] 3R_28164436_SNP [dm6]	A	G	7.800e^-5	0.339	INTRON CG34354
X	8111930	X_8111930_SNP [dm3] X_8217897_SNP [dm6]	G	C	7.805e^-5	0.339	INTRON sdt	TF binding site BDTNP1_TFBS_dl
2L	1693920	2L_1693920_SNP [dm3] 2L_1693920_SNP [dm6]	A	T	7.828e^-5	0.339	INTRON chinmo
2L	8961673	2L_8961673_SNP [dm3] 2L_8961673_SNP [dm6]	C	T	7.834e^-5	0.339	NON_SYNONYMOUS_CODING CG9525 UPSTREAM CG32985
2L	1088337	2L_1088337_DEL [dm3] 2L_1088337_DEL [dm6]	AT	A	7.839e^-5	0.339	INTRON CG4629
3L	6934368	3L_6934368_SNP [dm3] 3L_6941268_SNP [dm6]	A	G	7.853e^-5	0.339	INTERGENIC
2L	1274955	2L_1274955_SNP [dm3] 2L_1274955_SNP [dm6]	T	A	7.916e^-5	0.339	INTRON robo3	TF binding site mE1_TFBS_chinmo
3R	22824670	3R_22824670_SNP [dm3] 3R_26998948_SNP [dm6]	C	T	7.934e^-5	0.339	UPSTREAM CG31077 INTRON RYa-R
2R	11286523	2R_11286523_SNP [dm3] 2R_15399018_SNP [dm6]	A	C	8.023e^-5	0.339	INTERGENIC
3L	6041599	3L_6041599_SNP [dm3] 3L_6048499_SNP [dm6]	T	C	8.049e^-5	0.339	INTERGENIC
3R	7338747	3R_7338747_SNP [dm3] 3R_11513025_SNP [dm6]	C	T	8.059e^-5	0.339	INTERGENIC
3L	4620951	3L_4620951_SNP [dm3] 3L_4620951_SNP [dm6]	C	A	8.067e^-5	0.339	UPSTREAM CG32246 INTRON Src64B
3R	23679329	3R_23679329_SNP [dm3] 3R_27853607_SNP [dm6]	G	A	8.105e^-5	0.339	INTRON CG34353
3R	23679405	3R_23679405_SNP [dm3] 3R_27853683_SNP [dm6]	A	T	8.105e^-5	0.339	INTRON CG34353
3L	16006514	3L_16006514_SNP [dm3] 3L_16013414_SNP [dm6]	A	C	8.108e^-5	0.339	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3R	20167499	3R_20167499_SNP [dm3] 3R_24341777_SNP [dm6]	T	A	8.142e^-5	0.339	UPSTREAM Ms INTRON Ms	TF binding site mE1_TFBS_cad
3R	15119313	3R_15119313_SNP [dm3] 3R_19293591_SNP [dm6]	T	A	8.168e^-5	0.339	INTERGENIC
X	10982397	X_10982397_SNP [dm3] X_11088364_SNP [dm6]	A	C	8.171e^-5	0.339	UPSTREAM Vago DOWNSTREAM CR45604 INTERGENIC
2R	15283506	2R_15283506_SNP [dm3] 2R_19396001_SNP [dm6]	C	T	8.175e^-5	0.339	UPSTREAM SdhA DOWNSTREAM cer INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16113377	3L_16113377_SNP [dm3] 3L_16120277_SNP [dm6]	T	A	8.202e^-5	0.339	UTR_3_PRIME Taf4	TF binding site mE1_TFBS_cad
3R	25456725	3R_25456725_SNP [dm3] 3R_29631003_SNP [dm6]	T	C	8.282e^-5	0.339	UTR_3_PRIME Dop1R2
3R	23676008	3R_23676008_DEL [dm3] 3R_27850286_DEL [dm6]	TTTTTCATAA	T	8.348e^-5	0.339	INTRON CG34353
3R	10187066	3R_10187066_SNP [dm3] 3R_14361344_SNP [dm6]	T	G	8.349e^-5	0.339	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1303001	2L_1303001_SNP [dm3] 2L_1303001_SNP [dm6]	T	A	8.353e^-5	0.339	INTERGENIC
2L	18313996	2L_18313996_DEL [dm3] 2L_18313996_DEL [dm6]	CCGCAGTGCATG...	C	8.370e^-5	0.339	EXON CR44489	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10775971	3R_10775971_SNP [dm3] 3R_14950249_SNP [dm6]	G	A	8.403e^-5	0.339	INTERGENIC
2L	1497421	2L_1497421_SNP [dm3] 2L_1497421_SNP [dm6]	T	G	8.421e^-5	0.339	SYNONYMOUS_CODING CG31661 DOWNSTREAM CG31926	TF binding site mE1_TFBS_HSA
3R	9866002	3R_9866002_SNP [dm3] 3R_14040280_SNP [dm6]	T	A	8.435e^-5	0.339	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15843638	2R_15843638_SNP [dm3] 2R_19956133_SNP [dm6]	C	A	8.437e^-5	0.339	UPSTREAM CG44623 INTERGENIC
2L	9576428	2L_9576428_SNP [dm3] 2L_9576428_SNP [dm6]	C	T	8.441e^-5	0.339	INTRON Mtpalpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	6041650	3L_6041650_SNP [dm3] 3L_6048550_SNP [dm6]	C	G	8.444e^-5	0.339	INTERGENIC
3R	2943252	3R_2943252_SNP [dm3] 3R_7117530_SNP [dm6]	A	G	8.463e^-5	0.339	UPSTREAM Mlp84B INTRON Alh & 1 other
3L	8166579	3L_8166579_SNP [dm3] 3L_8173479_SNP [dm6]	A	T	8.464e^-5	0.339	SYNONYMOUS_CODING RecQ4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9734769	3L_9734769_INS [dm3] 3L_9741669_INS [dm6]	T	TGT	8.468e^-5	0.339	INTRON CG42268 & 1 other
3L	9740504	3L_9740504_SNP [dm3] 3L_9747404_SNP [dm6]	T	G	8.506e^-5	0.339	SYNONYMOUS_CODING CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16090944	3L_16090944_SNP [dm3] 3L_16097844_SNP [dm6]	G	T	8.516e^-5	0.339	UTR_5_PRIME ms_3_72Dt UPSTREAM CG13074
3R	24653938	3R_24653938_SNP [dm3] 3R_28828216_SNP [dm6]	T	A	8.531e^-5	0.339	UPSTREAM WASp INTRON WASp
3L	1522727	3L_1522727_SNP [dm3] 3L_1522727_SNP [dm6]	T	C	8.545e^-5	0.339	SYNONYMOUS_CODING Psa DOWNSTREAM CG12090	TF binding site mE1_TFBS_cad
2L	1257482	2L_1257482_SNP [dm3] 2L_1257482_SNP [dm6]	C	G	8.588e^-5	0.339	INTRON robo3
2L	1266294	2L_1266294_SNP [dm3] 2L_1266294_SNP [dm6]	T	C	8.588e^-5	0.339	INTRON robo3
2L	1268476	2L_1268476_SNP [dm3] 2L_1268476_SNP [dm6]	G	T	8.588e^-5	0.339	INTRON robo3
2L	8582667	2L_8582667_SNP [dm3] 2L_8582667_SNP [dm6]	G	T	8.610e^-5	0.339	INTRON Sema-1a
2L	1271797	2L_1271797_SNP [dm3] 2L_1271797_SNP [dm6]	C	G	8.676e^-5	0.339	INTRON robo3
2L	18292031	2L_18292031_SNP [dm3] 2L_18292031_SNP [dm6]	C	A	8.686e^-5	0.339	UPSTREAM CR44696 & 2 others EXON CR44693
2L	1138979	2L_1138979_SNP [dm3] 2L_1138979_SNP [dm6]	T	C	8.692e^-5	0.339	SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	477549	X_477549_SNP [dm3] X_583516_SNP [dm6]	A	T	8.694e^-5	0.339	INTRON vnd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6041230	3L_6041230_SNP [dm3] 3L_6048130_SNP [dm6]	T	C	8.695e^-5	0.339	INTERGENIC
2L	8634200	2L_8634200_SNP [dm3] 2L_8634200_SNP [dm6]	T	A	8.712e^-5	0.339	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
3L	6037518	3L_6037518_SNP [dm3] 3L_6044418_SNP [dm6]	T	C	8.714e^-5	0.339	INTERGENIC
2L	1101275	2L_1101275_SNP [dm3] 2L_1101275_SNP [dm6]	C	T	8.717e^-5	0.339	INTRON CG4629
2L	12339579	2L_12339579_DEL [dm3] 2L_12339579_DEL [dm6]	CTT	C	8.771e^-5	0.339	DOWNSTREAM CG31862 INTERGENIC
2L	1687922	2L_1687922_SNP [dm3] 2L_1687922_SNP [dm6]	A	G	8.776e^-5	0.339	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1688539	2L_1688539_SNP [dm3] 2L_1688539_SNP [dm6]	A	G	8.776e^-5	0.339	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9759861	2L_9759861_SNP [dm3] 2L_9759861_SNP [dm6]	T	C	8.783e^-5	0.339	SYNONYMOUS_CODING zf30C	TF binding site mE1_TFBS_cad
3L	6271422	3L_6271422_SNP [dm3] 3L_6278322_SNP [dm6]	T	G	8.792e^-5	0.339	INTERGENIC
3L	11477506	3L_11477506_SNP [dm3] 3L_11484406_SNP [dm6]	G	A	8.793e^-5	0.339	INTERGENIC
2L	1280094	2L_1280094_SNP [dm3] 2L_1280094_SNP [dm6]	G	A	8.795e^-5	0.339	INTRON robo3
2L	2083681	2L_2083681_SNP [dm3] 2L_2083681_SNP [dm6]	T	C	8.867e^-5	0.342	INTRON dpr3 EXON CR44055
3R	5126381	3R_5126381_SNP [dm3] 3R_9300659_SNP [dm6]	T	A	8.898e^-5	0.342	INTRON CG8861
2R	12290764	2R_12290764_SNP [dm3] 2R_16403259_SNP [dm6]	A	C	8.930e^-5	0.343	INTRON Sema-2b
3R	23991038	3R_23991038_SNP [dm3] 3R_28165316_SNP [dm6]	C	T	8.967e^-5	0.343	INTRON CG34354
X	16289841	X_16289841_SNP [dm3] X_16395808_SNP [dm6]	G	A	8.991e^-5	0.343	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
2L	1303002	2L_1303002_SNP [dm3] 2L_1303002_SNP [dm6]	T	A	9.117e^-5	0.348	INTERGENIC
2R	19390085	2R_19390085_SNP [dm3] 2R_23502562_SNP [dm6]	A	G	9.144e^-5	0.348	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2943251	3R_2943251_SNP [dm3] 3R_7117529_SNP [dm6]	T	A	9.203e^-5	0.349	UPSTREAM Mlp84B INTRON Alh & 1 other
3L	9733949	3L_9733949_SNP [dm3] 3L_9740849_SNP [dm6]	A	G	9.203e^-5	0.349	UPSTREAM CR44348 INTRON CG42268
2L	12154066	2L_12154066_SNP [dm3] 2L_12154066_SNP [dm6]	G	T	9.241e^-5	0.349	INTRON CG31760
2L	1352394	2L_1352394_SNP [dm3] 2L_1352394_SNP [dm6]	C	T	9.245e^-5	0.349	SYNONYMOUS_CODING CG5556 DOWNSTREAM CG5561
2R	13764149	2R_13764149_SNP [dm3] 2R_17876644_SNP [dm6]	T	G	9.278e^-5	0.349	DOWNSTREAM CG30325 INTRON Elk
2L	1285080	2L_1285080_SNP [dm3] 2L_1285080_SNP [dm6]	C	T	9.329e^-5	0.349	INTRON robo3
3R	25258227	3R_25258227_SNP [dm3] 3R_29432505_SNP [dm6]	C	G	9.344e^-5	0.349	INTRON Ptp99A
3L	9471581	3L_9471581_SNP [dm3] 3L_9478481_SNP [dm6]	T	C	9.377e^-5	0.349	INTRON Jarid2	TF binding site BDTNP1_TFBS_dl
2L	1696922	2L_1696922_SNP [dm3] 2L_1696922_SNP [dm6]	T	A	9.390e^-5	0.349	UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_hkb mE1_TFBS_HSA
2L	4676342	2L_4676342_SNP [dm3] 2L_4676342_SNP [dm6]	T	C	9.402e^-5	0.349	INTERGENIC
3L	10771452	3L_10771452_DEL [dm3] 3L_10778352_DEL [dm6]	GG	G	9.417e^-5	0.349	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10573292	3L_10573292_SNP [dm3] 3L_10580192_SNP [dm6]	C	G	9.468e^-5	0.349	INTRON A2bp1
3L	4603698	3L_4603698_SNP [dm3] 3L_4603698_SNP [dm6]	T	A	9.481e^-5	0.349	INTRON Src64B
3L	11182759	3L_11182759_SNP [dm3] 3L_11189659_SNP [dm6]	A	G	9.484e^-5	0.349	INTRON GlcAT-P
3L	13598506	3L_13598506_SNP [dm3] 3L_13605406_SNP [dm6]	C	T	9.495e^-5	0.349	INTRON bru-3
3L	920488	3L_920488_SNP [dm3] 3L_920488_SNP [dm6]	A	G	9.500e^-5	0.349	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19377224	2R_19377224_SNP [dm3] 2R_23489701_SNP [dm6]	G	C	9.532e^-5	0.349	INTRON CG43795
2L	9132154	2L_9132154_SNP [dm3] 2L_9132154_SNP [dm6]	G	A	9.543e^-5	0.349	INTRON CG32982
3R	23990159	3R_23990159_SNP [dm3] 3R_28164437_SNP [dm6]	C	G	9.549e^-5	0.349	INTRON CG34354
3L	9735626	3L_9735626_SNP [dm3] 3L_9742526_SNP [dm6]	G	A	9.551e^-5	0.349	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
3L	2408016	3L_2408016_SNP [dm3] 3L_2408016_SNP [dm6]	T	C	9.577e^-5	0.349	NON_SYNONYMOUS_CODING CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12154016	2L_12154016_SNP [dm3] 2L_12154016_SNP [dm6]	C	T	9.580e^-5	0.349	INTRON CG31760
3L	16006509	3L_16006509_INS [dm3] 3L_16013409_INS [dm6]	G	AGTGGT	9.592e^-5	0.349	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	16012319	3L_16012319_SNP [dm3] 3L_16019219_SNP [dm6]	A	G	9.617e^-5	0.349	UPSTREAM CR43950 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	9733238	3L_9733238_SNP [dm3] 3L_9740138_SNP [dm6]	G	C	9.669e^-5	0.35	UPSTREAM CG42268 INTRON CG42268
3R	10456018	3R_10456018_SNP [dm3] 3R_14630296_SNP [dm6]	G	A	9.682e^-5	0.35	UPSTREAM Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1302792	2L_1302792_SNP [dm3] 2L_1302792_SNP [dm6]	A	C	9.716e^-5	0.35	INTERGENIC
3R	2901858	3R_2901858_SNP [dm3] 3R_7076136_SNP [dm6]	G	T	9.733e^-5	0.35	UPSTREAM CG1943 INTRON CG1943	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4872269	2L_4872269_SNP [dm3] 2L_4872269_SNP [dm6]	A	G	9.755e^-5	0.35	SYNONYMOUS_CODING pog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	7745882	3L_7745882_SNP [dm3] 3L_7752782_SNP [dm6]	C	T	9.771e^-5	0.35	INTRON CG32373
2R	17163755	2R_17163755_SNP [dm3] 2R_21276250_SNP [dm6]	T	G	9.773e^-5	0.35	SYNONYMOUS_CODING Rgk3
2R	15396694	2R_15396694_SNP [dm3] 2R_19509189_SNP [dm6]	G	C	9.794e^-5	0.35	SYNONYMOUS_CODING Ir56b UPSTREAM Ir56c
X	15671241	X_15671241_SNP [dm3] X_15777208_SNP [dm6]	C	T	9.803e^-5	0.35	SYNONYMOUS_CODING CG43672
3R	24537389	3R_24537389_SNP [dm3] 3R_28711667_SNP [dm6]	C	A	9.847e^-5	0.35	INTRON htt
2L	1551737	2L_1551737_SNP [dm3] 2L_1551737_SNP [dm6]	T	C	9.856e^-5	0.35	INTERGENIC
2R	20385258	2R_20385258_SNP [dm3] 2R_24497735_SNP [dm6]	A	G	9.870e^-5	0.35	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17931845	3R_17931845_SNP [dm3] 3R_22106123_SNP [dm6]	C	T	9.929e^-5	0.351	DOWNSTREAM CG13407 INTRON CG5778
3L	12621568	3L_12621568_SNP [dm3] 3L_12628468_SNP [dm6]	T	G	9.933e^-5	0.351	INTRON CR32111	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14774953	3R_14774953_SNP [dm3] 3R_18949231_SNP [dm6]	G	A	1.000e^-4	0.352	UPSTREAM CG42613 & 1 other INTRON CG42613
2L	4676266	2L_4676266_DEL [dm3] 2L_4676266_DEL [dm6]	TG	T	1.003e^-4	0.352	INTERGENIC
3L	16006504	3L_16006504_MNP [dm3] 3L_16013404_MNP [dm6]	AAAA	GTTT	1.003e^-4	0.352	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	16006515	3L_16006515_SNP [dm3] 3L_16013415_SNP [dm6]	T	A	1.013e^-4	0.355	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
X	8628561	X_8628561_SNP [dm3] X_8734528_SNP [dm6]	C	A	1.020e^-4	0.356	INTERGENIC
3L	7085318	3L_7085318_SNP [dm3] 3L_7092218_SNP [dm6]	G	T	1.022e^-4	0.356	UPSTREAM Cpr65Ec INTERGENIC
2L	8582673	2L_8582673_SNP [dm3] 2L_8582673_SNP [dm6]	T	A	1.022e^-4	0.356	INTRON Sema-1a
2L	1140248	2L_1140248_SNP [dm3] 2L_1140248_SNP [dm6]	G	A	1.023e^-4	0.356	UTR_3_PRIME CG4577
X	479080	X_479080_SNP [dm3] X_585047_SNP [dm6]	G	T	1.028e^-4	0.356	DOWNSTREAM CG13366 INTRON vnd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12096986	3L_12096986_SNP [dm3] 3L_12103886_SNP [dm6]	A	T	1.030e^-4	0.356	INTERGENIC
3L	282729	3L_282729_SNP [dm3] 3L_282729_SNP [dm6]	G	A	1.036e^-4	0.356	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9003494	X_9003494_SNP [dm3] X_9109461_SNP [dm6]	A	G	1.037e^-4	0.356	UPSTREAM AP-1gamma INTRON AP-1gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	23233784	3R_23233784_SNP [dm3] 3R_27408062_SNP [dm6]	C	T	1.037e^-4	0.356	INTRON side
2L	15551843	2L_15551843_SNP [dm3] 2L_15551843_SNP [dm6]	G	A	1.041e^-4	0.356	UTR_3_PRIME CG15256 UPSTREAM kek3 DOWNSTREAM CG15256
3R	26075841	3R_26075841_SNP [dm3] 3R_30250119_SNP [dm6]	G	C	1.043e^-4	0.356	UPSTREAM CG9682 DOWNSTREAM CG34299 INTRON CG34299	TF binding site mE1_TFBS_inv
3R	23312570	3R_23312570_SNP [dm3] 3R_27486848_SNP [dm6]	A	T	1.044e^-4	0.356	INTERGENIC
3R	2956127	3R_2956127_SNP [dm3] 3R_7130405_SNP [dm6]	T	A	1.048e^-4	0.356	DOWNSTREAM tRNA:CR31494 & 1 other INTRON CG31248
X	20285472	X_20285472_SNP [dm3] X_20414445_SNP [dm6]	T	C	1.050e^-4	0.356	UPSTREAM CG15459 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	6005622	3R_6005622_SNP [dm3] 3R_10179900_SNP [dm6]	C	T	1.051e^-4	0.356	INTRON CG12814
3R	6006573	3R_6006573_SNP [dm3] 3R_10180851_SNP [dm6]	T	C	1.051e^-4	0.356	INTRON CG12814
3R	6152850	3R_6152850_SNP [dm3] 3R_10327128_SNP [dm6]	G	C	1.052e^-4	0.356	NON_SYNONYMOUS_CODING Bruce	TF binding site mE1_TFBS_sens
3L	2147048	3L_2147048_SNP [dm3] 3L_2147048_SNP [dm6]	T	C	1.053e^-4	0.356	INTRON zormin
3R	4936311	3R_4936311_SNP [dm3] 3R_9110589_SNP [dm6]	A	G	1.054e^-4	0.356	INTRON pum
3R	24644041	3R_24644041_SNP [dm3] 3R_28818319_SNP [dm6]	T	A	1.054e^-4	0.356	NON_SYNONYMOUS_CODING CG1523 DOWNSTREAM CG1646	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1649968	2L_1649968_SNP [dm3] 2L_1649968_SNP [dm6]	T	C	1.062e^-4	0.358	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1307546	2L_1307546_SNP [dm3] 2L_1307546_SNP [dm6]	A	C	1.064e^-4	0.358	INTERGENIC
2L	1088330	2L_1088330_SNP [dm3] 2L_1088330_SNP [dm6]	G	A	1.068e^-4	0.358	INTRON CG4629
3L	19359809	3L_19359809_SNP [dm3] 3L_19366709_SNP [dm6]	G	A	1.070e^-4	0.358	INTRON CG32206
3L	6059849	3L_6059849_SNP [dm3] 3L_6066749_SNP [dm6]	T	C	1.072e^-4	0.358	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo
2L	4676214	2L_4676214_SNP [dm3] 2L_4676214_SNP [dm6]	A	G	1.073e^-4	0.358	INTERGENIC
2L	12498279	2L_12498279_SNP [dm3] 2L_12498279_SNP [dm6]	C	T	1.074e^-4	0.358	UPSTREAM t-cup INTRON bun
3R	20743695	3R_20743695_SNP [dm3] 3R_24917973_SNP [dm6]	G	T	1.075e^-4	0.358	UPSTREAM CG11168 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2L	13124727	2L_13124727_SNP [dm3] 2L_13124727_SNP [dm6]	G	A	1.076e^-4	0.358	INTERGENIC
3L	1130632	3L_1130632_SNP [dm3] 3L_1130632_SNP [dm6]	G	C	1.081e^-4	0.358	INTERGENIC	regulatory region REDfly_CRMs
3L	2983854	3L_2983854_SNP [dm3] 3L_2983854_SNP [dm6]	C	T	1.082e^-4	0.358	DOWNSTREAM CG2107 INTERGENIC
X	1781706	X_1781706_SNP [dm3] X_1887673_SNP [dm6]	C	T	1.083e^-4	0.358	SYNONYMOUS_CODING trr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18302220	2L_18302220_SNP [dm3] 2L_18302220_SNP [dm6]	G	A	1.089e^-4	0.36	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15119292	3R_15119292_SNP [dm3] 3R_19293570_SNP [dm6]	G	A	1.092e^-4	0.36	INTERGENIC
3R	22823769	3R_22823769_SNP [dm3] 3R_26998047_SNP [dm6]	T	C	1.094e^-4	0.36	INTRON RYa-R
3L	16094878	3L_16094878_SNP [dm3] 3L_16101778_SNP [dm6]	A	G	1.101e^-4	0.361	NON_SYNONYMOUS_CODING CG5414	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9586778	2L_9586778_SNP [dm3] 2L_9586778_SNP [dm6]	A	G	1.103e^-4	0.361	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	24803578	3R_24803578_SNP [dm3] 3R_28977856_SNP [dm6]	T	G	1.108e^-4	0.361	INTERGENIC
2L	8661642	2L_8661642_SNP [dm3] 2L_8661642_SNP [dm6]	C	G	1.111e^-4	0.361	INTRON Sema-1a
3R	23301246	3R_23301246_SNP [dm3] 3R_27475524_SNP [dm6]	G	A	1.113e^-4	0.361	INTERGENIC
X	16298234	X_16298234_SNP [dm3] X_16404201_SNP [dm6]	T	A	1.116e^-4	0.361	UPSTREAM CG9981 INTRON CG9981
2L	6935448	2L_6935448_SNP [dm3] 2L_6935448_SNP [dm6]	A	G	1.118e^-4	0.361	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13716199	2R_13716199_SNP [dm3] 2R_17828694_SNP [dm6]	C	T	1.118e^-4	0.361	INTRON grh
3L	18278670	3L_18278670_SNP [dm3] 3L_18285570_SNP [dm6]	A	T	1.127e^-4	0.361	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	13734820	2L_13734820_INS [dm3] 2L_13734820_INS [dm6]	G	GG	1.127e^-4	0.361	INTERGENIC
X	3558617	X_3558617_SNP [dm3] X_3664584_SNP [dm6]	A	T	1.128e^-4	0.361	SYNONYMOUS_CODING AstA-R1
2L	1693575	2L_1693575_SNP [dm3] 2L_1693575_SNP [dm6]	G	A	1.128e^-4	0.361	INTRON chinmo
3L	2983855	3L_2983855_SNP [dm3] 3L_2983855_SNP [dm6]	T	A	1.128e^-4	0.361	DOWNSTREAM CG2107 INTERGENIC
X	9003452	X_9003452_SNP [dm3] X_9109419_SNP [dm6]	A	G	1.131e^-4	0.361	UPSTREAM AP-1gamma INTRON AP-1gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	7085109	3L_7085109_SNP [dm3] 3L_7092009_SNP [dm6]	T	G	1.137e^-4	0.361	INTERGENIC
3R	2814624	3R_2814624_SNP [dm3] 3R_6988902_SNP [dm6]	T	C	1.138e^-4	0.361	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	19198601	3R_19198601_SNP [dm3] 3R_23372879_SNP [dm6]	T	A	1.139e^-4	0.361	UPSTREAM CG42827 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9771966	2L_9771966_SNP [dm3] 2L_9771966_SNP [dm6]	C	G	1.142e^-4	0.361	SYNONYMOUS_CODING ppk16 UPSTREAM ppk18
2L	9771981	2L_9771981_SNP [dm3] 2L_9771981_SNP [dm6]	C	T	1.142e^-4	0.361	SYNONYMOUS_CODING ppk16 UPSTREAM ppk18
2L	1672838	2L_1672838_SNP [dm3] 2L_1672838_SNP [dm6]	C	T	1.147e^-4	0.361	INTRON chinmo
3L	13101426	3L_13101426_SNP [dm3] 3L_13108326_SNP [dm6]	G	T	1.149e^-4	0.361	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	13370299	3L_13370299_DEL [dm3] 3L_13377199_DEL [dm6]	GC	G	1.152e^-4	0.361	UPSTREAM CG14111 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7250834	3R_7250834_SNP [dm3] 3R_11425112_SNP [dm6]	C	T	1.154e^-4	0.361	SYNONYMOUS_CODING CG5270	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16006500	3L_16006500_SNP [dm3] 3L_16013400_SNP [dm6]	A	T	1.154e^-4	0.361	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	2676733	3R_2676733_SNP [dm3] 3R_6851011_SNP [dm6]	T	A	1.157e^-4	0.361	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	14506639	2R_14506639_SNP [dm3] 2R_18619134_SNP [dm6]	G	T	1.158e^-4	0.361	DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z
3R	7270228	3R_7270228_SNP [dm3] 3R_11444506_SNP [dm6]	A	G	1.159e^-4	0.361	INTRON CG17230 & 1 other
3R	10779887	3R_10779887_SNP [dm3] 3R_14954165_SNP [dm6]	G	T	1.160e^-4	0.361	INTERGENIC
2L	6277033	2L_6277033_SNP [dm3] 2L_6277033_SNP [dm6]	G	A	1.160e^-4	0.361	INTRON Ddr
2L	8622566	2L_8622566_SNP [dm3] 2L_8622566_SNP [dm6]	T	A	1.162e^-4	0.361	INTRON Sema-1a
X	481388	X_481388_SNP [dm3] X_587355_SNP [dm6]	T	A	1.164e^-4	0.361	INTRON vnd & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6271457	3L_6271457_SNP [dm3] 3L_6278357_SNP [dm6]	A	G	1.164e^-4	0.361	INTERGENIC
3R	16991474	3R_16991474_SNP [dm3] 3R_21165752_SNP [dm6]	C	T	1.165e^-4	0.361	NON_SYNONYMOUS_CODING Snmp1 DOWNSTREAM CG5810 INTRON SNF4Agamma
3L	16006502	3L_16006502_SNP [dm3] 3L_16013402_SNP [dm6]	A	G	1.170e^-4	0.361	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	9735704	3L_9735704_SNP [dm3] 3L_9742604_SNP [dm6]	A	T	1.171e^-4	0.361	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3331806	X_3331806_SNP [dm3] X_3437773_SNP [dm6]	C	T	1.171e^-4	0.361	INTRON CR44999 & 1 other
3L	8118339	3L_8118339_SNP [dm3] 3L_8125239_SNP [dm6]	A	T	1.173e^-4	0.361	UPSTREAM CG7550 & 1 other DOWNSTREAM Uba2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12352826	3L_12352826_SNP [dm3] 3L_12359726_SNP [dm6]	T	C	1.177e^-4	0.361	INTERGENIC
2L	1467380	2L_1467380_SNP [dm3] 2L_1467380_SNP [dm6]	T	C	1.178e^-4	0.361	INTERGENIC
3L	18284725	3L_18284725_SNP [dm3] 3L_18291625_SNP [dm6]	C	G	1.178e^-4	0.361	DOWNSTREAM CG5103 INTERGENIC
2L	1781748	2L_1781748_SNP [dm3] 2L_1781748_SNP [dm6]	C	A	1.180e^-4	0.361	INTERGENIC
2L	18313870	2L_18313870_SNP [dm3] 2L_18313870_SNP [dm6]	G	A	1.180e^-4	0.361	EXON CR44489	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12292177	2R_12292177_SNP [dm3] 2R_16404672_SNP [dm6]	A	G	1.181e^-4	0.361	INTRON Sema-2b
2L	8590724	2L_8590724_SNP [dm3] 2L_8590724_SNP [dm6]	A	T	1.182e^-4	0.361	INTRON Sema-1a & 1 other
3R	3012156	3R_3012156_SNP [dm3] 3R_7186434_SNP [dm6]	C	T	1.182e^-4	0.361	SYNONYMOUS_CODING CG10055 UPSTREAM lap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15188261	2R_15188261_SNP [dm3] 2R_19300756_SNP [dm6]	C	T	1.185e^-4	0.361	SYNONYMOUS_CODING Tab2	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	26722368	3R_26722368_SNP [dm3] 3R_30896646_SNP [dm6]	C	T	1.187e^-4	0.361	INTRON Cyp4c3
2L	3054655	2L_3054655_SNP [dm3] 2L_3054655_SNP [dm6]	A	G	1.193e^-4	0.362	INTRON v_2_k05816	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18302189	2L_18302189_SNP [dm3] 2L_18302189_SNP [dm6]	G	T	1.195e^-4	0.362	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	4320439	X_4320439_SNP [dm3] X_4426406_SNP [dm6]	A	T	1.202e^-4	0.362	UPSTREAM bi INTRON CR32773 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
2R	14082458	2R_14082458_SNP [dm3] 2R_18194953_SNP [dm6]	T	G	1.207e^-4	0.362	INTERGENIC
3L	16095496	3L_16095496_SNP [dm3] 3L_16102396_SNP [dm6]	C	T	1.208e^-4	0.362	NON_SYNONYMOUS_CODING CG5414 SPLICE_SITE_REGION CG5414
2L	12154021	2L_12154021_SNP [dm3] 2L_12154021_SNP [dm6]	A	C	1.208e^-4	0.362	INTRON CG31760
2R	20731566	2R_20731566_SNP [dm3] 2R_24844043_SNP [dm6]	C	A	1.208e^-4	0.362	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12622295	2L_12622295_SNP [dm3] 2L_12622295_SNP [dm6]	G	A	1.210e^-4	0.362	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10779841	3R_10779841_SNP [dm3] 3R_14954119_SNP [dm6]	G	A	1.211e^-4	0.362	INTERGENIC
3L	1089437	3L_1089437_INS [dm3] 3L_1089437_INS [dm6]	T	TT	1.212e^-4	0.362	INTRON bab1	regulatory region REDfly_CRMs
2L	8624860	2L_8624860_SNP [dm3] 2L_8624860_SNP [dm6]	A	G	1.213e^-4	0.362	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
X	9003447	X_9003447_SNP [dm3] X_9109414_SNP [dm6]	T	C	1.215e^-4	0.362	UPSTREAM AP-1gamma INTRON AP-1gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	15031823	3L_15031823_SNP [dm3] 3L_15038723_SNP [dm6]	T	G	1.215e^-4	0.362	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb
3L	16006626	3L_16006626_SNP [dm3] 3L_16013526_SNP [dm6]	T	A	1.229e^-4	0.365	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
X	5547074	X_5547074_SNP [dm3] X_5653041_SNP [dm6]	G	A	1.232e^-4	0.365	UTR_3_PRIME CG42265
3L	18280165	3L_18280165_SNP [dm3] 3L_18287065_SNP [dm6]	G	A	1.232e^-4	0.365	INTERGENIC
2R	18844255	2R_18844255_SNP [dm3] 2R_22956732_SNP [dm6]	G	A	1.238e^-4	0.366	DOWNSTREAM CR44780 INTERGENIC
2L	6293910	2L_6293910_SNP [dm3] 2L_6293910_SNP [dm6]	G	T	1.238e^-4	0.366	INTRON Ddr
3R	7198019	3R_7198019_SNP [dm3] 3R_11372297_SNP [dm6]	A	G	1.249e^-4	0.366	SYNONYMOUS_CODING pros UPSTREAM pros	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	14154068	X_14154068_SNP [dm3] X_14260035_SNP [dm6]	C	T	1.251e^-4	0.366	INTERGENIC
3L	18275705	3L_18275705_SNP [dm3] 3L_18282605_SNP [dm6]	C	T	1.253e^-4	0.366	INTERGENIC
3L	13777370	3L_13777370_SNP [dm3] 3L_13784270_SNP [dm6]	A	G	1.253e^-4	0.366	INTRON bru-3
3L	9055438	3L_9055438_SNP [dm3] 3L_9062338_SNP [dm6]	A	G	1.257e^-4	0.366	SYNONYMOUS_CODING Argk UTR_5_PRIME Argk INTRON Argk
3L	6633379	3L_6633379_SNP [dm3] 3L_6640279_SNP [dm6]	G	A	1.258e^-4	0.366	UPSTREAM CR45238 INTERGENIC
3R	23675511	3R_23675511_SNP [dm3] 3R_27849789_SNP [dm6]	A	G	1.259e^-4	0.366	INTRON CG34353
3R	23676018	3R_23676018_DEL [dm3] 3R_27850296_DEL [dm6]	GTAAGTTATAAGC...	G	1.262e^-4	0.366	INTRON CG34353
2L	8624863	2L_8624863_SNP [dm3] 2L_8624863_SNP [dm6]	A	T	1.262e^-4	0.366	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi
3L	1364996	3L_1364996_DEL [dm3] 3L_1364996_DEL [dm6]	TCTTATTATATGGAAT...	T	1.264e^-4	0.366	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8930886	2R_8930886_SNP [dm3] 2R_13043381_SNP [dm6]	C	A	1.264e^-4	0.366	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3L	11180273	3L_11180273_SNP [dm3] 3L_11187173_SNP [dm6]	C	A	1.266e^-4	0.366	INTRON GlcAT-P
3R	19218279	3R_19218279_SNP [dm3] 3R_23392557_SNP [dm6]	C	T	1.269e^-4	0.366	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16458820	3L_16458820_SNP [dm3] 3L_16465720_SNP [dm6]	A	C	1.270e^-4	0.366	INTRON CG33158
3L	6646064	3L_6646064_SNP [dm3] 3L_6652964_SNP [dm6]	G	A	1.271e^-4	0.366	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14622827	2L_14622827_SNP [dm3] 2L_14622827_SNP [dm6]	C	T	1.272e^-4	0.366	INTRON osp
3L	4101387	3L_4101387_SNP [dm3] 3L_4101387_SNP [dm6]	T	C	1.276e^-4	0.366	UPSTREAM CG14995 INTRON CG14995	TF binding site BDTNP1_TFBS_dl
2R	13716111	2R_13716111_SNP [dm3] 2R_17828606_SNP [dm6]	C	T	1.277e^-4	0.366	INTRON grh
3R	2994122	3R_2994122_SNP [dm3] 3R_7168400_SNP [dm6]	C	A	1.279e^-4	0.366	INTRON sas
2L	13907381	2L_13907381_SNP [dm3] 2L_13907381_SNP [dm6]	G	T	1.280e^-4	0.366	INTRON Ance
3R	6007203	3R_6007203_SNP [dm3] 3R_10181481_SNP [dm6]	G	A	1.283e^-4	0.366	INTRON CG12814
2L	8636600	2L_8636600_SNP [dm3] 2L_8636600_SNP [dm6]	C	A	1.285e^-4	0.366	INTRON Sema-1a
2L	9605216	2L_9605216_INS [dm3] 2L_9605216_INS [dm6]	C	TT	1.287e^-4	0.366	INTERGENIC	regulatory region REDfly_CRMs
3R	12707683	3R_12707683_SNP [dm3] 3R_16881961_SNP [dm6]	G	A	1.290e^-4	0.366	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10842833	3L_10842833_SNP [dm3] 3L_10849733_SNP [dm6]	T	A	1.293e^-4	0.366	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	2892430	3R_2892430_SNP [dm3] 3R_7066708_SNP [dm6]	G	C	1.294e^-4	0.366	UPSTREAM CG1965 INTRON CG1105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13795497	X_13795497_DEL [dm3] X_13901464_DEL [dm6]	TACAT	T	1.294e^-4	0.366	INTRON mamo
3R	25528835	3R_25528835_SNP [dm3] 3R_29703113_SNP [dm6]	A	G	1.295e^-4	0.366	INTERGENIC
X	9003459	X_9003459_DEL [dm3] X_9109426_DEL [dm6]	CCG	A	1.296e^-4	0.366	UPSTREAM AP-1gamma INTRON AP-1gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	23424943	3R_23424943_SNP [dm3] 3R_27599221_SNP [dm6]	C	A	1.296e^-4	0.366	INTRON dsd
3R	17526761	3R_17526761_SNP [dm3] 3R_21701039_SNP [dm6]	A	T	1.299e^-4	0.366	INTRON CG31176
X	8342624	X_8342624_SNP [dm3] X_8448591_SNP [dm6]	G	C	1.304e^-4	0.366	NON_SYNONYMOUS_CODING org-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6052261	3L_6052261_SNP [dm3] 3L_6059161_SNP [dm6]	T	C	1.304e^-4	0.366	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	19252740	3L_19252740_SNP [dm3] 3L_19259640_SNP [dm6]	C	G	1.305e^-4	0.366	UPSTREAM CR45210 INTRON nes
3L	13633616	3L_13633616_SNP [dm3] 3L_13640516_SNP [dm6]	G	C	1.312e^-4	0.366	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2269465	3L_2269465_SNP [dm3] 3L_2269465_SNP [dm6]	T	A	1.316e^-4	0.366	NON_SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16090728	3L_16090728_SNP [dm3] 3L_16097628_SNP [dm6]	T	C	1.316e^-4	0.366	UPSTREAM ms_3_72Dt & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	14081863	2R_14081863_SNP [dm3] 2R_18194358_SNP [dm6]	A	G	1.317e^-4	0.366	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14079384	3R_14079384_SNP [dm3] 3R_18253662_SNP [dm6]	T	C	1.317e^-4	0.366	SYNONYMOUS_CODING Ada2a UPSTREAM CG12320 INTRON Rpb4
2R	17436351	2R_17436351_SNP [dm3] 2R_21548846_SNP [dm6]	A	G	1.319e^-4	0.366	INTRON Egfr	TF binding site BDTNP1_TFBS_dl
2L	8593053	2L_8593053_SNP [dm3] 2L_8593053_SNP [dm6]	A	T	1.320e^-4	0.366	INTRON Sema-1a & 1 other
2L	9605043	2L_9605043_SNP [dm3] 2L_9605043_SNP [dm6]	T	C	1.321e^-4	0.366	INTERGENIC	regulatory region REDfly_CRMs
2R	13716172	2R_13716172_INS [dm3] 2R_17828667_INS [dm6]	T	TTAA	1.324e^-4	0.366	INTRON grh
3L	1361244	3L_1361244_SNP [dm3] 3L_1361244_SNP [dm6]	C	T	1.332e^-4	0.368	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da
X	5547240	X_5547240_SNP [dm3] X_5653207_SNP [dm6]	C	A	1.337e^-4	0.368	UTR_3_PRIME CG42265
3L	5171612	3L_5171612_SNP [dm3] 3L_5178512_SNP [dm6]	C	T	1.338e^-4	0.368	INTRON shep
2L	8633070	2L_8633070_SNP [dm3] 2L_8633070_SNP [dm6]	T	C	1.347e^-4	0.37	INTRON Sema-1a
2L	1615133	2L_1615133_SNP [dm3] 2L_1615133_SNP [dm6]	G	A	1.348e^-4	0.37	UPSTREAM RFeSP INTERGENIC
2L	6293592	2L_6293592_SNP [dm3] 2L_6293592_SNP [dm6]	T	C	1.352e^-4	0.371	SYNONYMOUS_CODING Ddr
2R	13531247	2R_13531247_SNP [dm3] 2R_17643742_SNP [dm6]	A	G	1.354e^-4	0.371	INTERGENIC
2L	12162158	2L_12162158_SNP [dm3] 2L_12162158_SNP [dm6]	G	C	1.359e^-4	0.371	NON_SYNONYMOUS_CODING CG31861 INTRON CG31760
3L	2800607	3L_2800607_SNP [dm3] 3L_2800607_SNP [dm6]	G	A	1.368e^-4	0.372	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	12621561	3L_12621561_SNP [dm3] 3L_12628461_SNP [dm6]	C	A	1.369e^-4	0.372	INTRON CR32111	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6131722	2L_6131722_DEL [dm3] 2L_6131722_DEL [dm6]	ATA	A	1.375e^-4	0.372	INTRON CG9222	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19257196	3L_19257196_SNP [dm3] 3L_19264096_SNP [dm6]	G	A	1.378e^-4	0.372	SPLICE_SITE_REGION CG42374 & 1 other UTR_5_PRIME CG9666 & 2 others UPSTREAM CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9605074	2L_9605074_SNP [dm3] 2L_9605074_SNP [dm6]	A	C	1.379e^-4	0.372	INTERGENIC	regulatory region REDfly_CRMs
3L	4609868	3L_4609868_SNP [dm3] 3L_4609868_SNP [dm6]	T	C	1.381e^-4	0.372	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20642420	2L_20642420_SNP [dm3] 2L_20642420_SNP [dm6]	T	G	1.381e^-4	0.372	UTR_3_PRIME CG17470 DOWNSTREAM Sfp38D & 1 other
X	9003444	X_9003444_SNP [dm3] X_9109411_SNP [dm6]	C	T	1.383e^-4	0.372	UPSTREAM AP-1gamma INTRON AP-1gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	1871164	X_1871164_SNP [dm3] X_1977131_SNP [dm6]	C	G	1.390e^-4	0.372	INTRON Hr4	TF binding site BDTNP1_TFBS_dl
2L	15332208	2L_15332208_SNP [dm3] 2L_15332208_SNP [dm6]	C	T	1.391e^-4	0.372	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	2510701	2L_2510701_SNP [dm3] 2L_2510701_SNP [dm6]	A	T	1.394e^-4	0.372	INTERGENIC
3L	11129525	3L_11129525_SNP [dm3] 3L_11136425_SNP [dm6]	G	T	1.395e^-4	0.372	DOWNSTREAM CG14143 INTRON CG32082
X	16298164	X_16298164_SNP [dm3] X_16404131_SNP [dm6]	C	T	1.395e^-4	0.372	UPSTREAM CG9981 INTRON CG9981
X	10982451	X_10982451_SNP [dm3] X_11088418_SNP [dm6]	A	C	1.397e^-4	0.372	UPSTREAM Vago DOWNSTREAM CR45604 INTERGENIC
3R	24675937	3R_24675937_SNP [dm3] 3R_28850215_SNP [dm6]	A	G	1.398e^-4	0.372	INTRON spg
2L	8369083	2L_8369083_SNP [dm3] 2L_8369083_SNP [dm6]	A	G	1.399e^-4	0.372	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2L	10480761	2L_10480761_SNP [dm3] 2L_10480761_SNP [dm6]	A	G	1.401e^-4	0.372	INTRON RluA-2	TF binding site mE1_TFBS_HSA
2R	18278439	2R_18278439_SNP [dm3] 2R_22390934_SNP [dm6]	C	T	1.401e^-4	0.372	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7235973	3R_7235973_SNP [dm3] 3R_11410251_SNP [dm6]	A	G	1.404e^-4	0.372	SYNONYMOUS_CODING Irbp UPSTREAM snoRNA:Irbp-a & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	13907577	2L_13907577_SNP [dm3] 2L_13907577_SNP [dm6]	A	G	1.405e^-4	0.372	INTRON Ance	TF binding site mE1_TFBS_cad
X	16958722	X_16958722_SNP [dm3] X_17064689_SNP [dm6]	G	A	1.407e^-4	0.372	INTRON CG45002
3L	7085292	3L_7085292_SNP [dm3] 3L_7092192_SNP [dm6]	T	A	1.407e^-4	0.372	INTERGENIC
3R	24170923	3R_24170923_SNP [dm3] 3R_28345201_SNP [dm6]	T	C	1.416e^-4	0.372	DOWNSTREAM Moca-cyp INTERGENIC	TF binding site mE1_TFBS_cad
2R	9889739	2R_9889739_SNP [dm3] 2R_14002234_SNP [dm6]	C	T	1.417e^-4	0.372	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1616542	2L_1616542_SNP [dm3] 2L_1616542_SNP [dm6]	C	A	1.418e^-4	0.372	INTERGENIC
3L	9735643	3L_9735643_SNP [dm3] 3L_9742543_SNP [dm6]	G	T	1.419e^-4	0.372	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_inv
3R	17526791	3R_17526791_SNP [dm3] 3R_21701069_SNP [dm6]	T	C	1.419e^-4	0.372	INTRON CG31176
3R	2680425	3R_2680425_SNP [dm3] 3R_6854703_SNP [dm6]	A	T	1.419e^-4	0.372	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	11530189	3R_11530189_SNP [dm3] 3R_15704467_SNP [dm6]	T	C	1.420e^-4	0.372	UPSTREAM CG5404 INTERGENIC
2L	8006649	2L_8006649_SNP [dm3] 2L_8006649_SNP [dm6]	G	A	1.420e^-4	0.372	NON_SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	6742066	X_6742066_SNP [dm3] X_6848033_SNP [dm6]	C	T	1.420e^-4	0.372	UTR_3_PRIME Cht11 DOWNSTREAM CG4557	TF binding site mE1_TFBS_cad
3L	16006555	3L_16006555_SNP [dm3] 3L_16013455_SNP [dm6]	T	C	1.425e^-4	0.372	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
3L	13394147	3L_13394147_SNP [dm3] 3L_13401047_SNP [dm6]	A	C	1.427e^-4	0.372	UTR_5_PRIME sens	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16006350	3L_16006350_DEL [dm3] 3L_16013250_DEL [dm6]	TC	T	1.427e^-4	0.372	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1621247	2L_1621247_SNP [dm3] 2L_1621247_SNP [dm6]	A	G	1.430e^-4	0.372	EXON CR44603	TF binding site BDTNP1_TFBS_dl
3L	6271473	3L_6271473_SNP [dm3] 3L_6278373_SNP [dm6]	G	T	1.435e^-4	0.373	INTERGENIC
3R	2847282	3R_2847282_SNP [dm3] 3R_7021560_SNP [dm6]	T	G	1.444e^-4	0.375	INTERGENIC
3R	7235279	3R_7235279_SNP [dm3] 3R_11409557_SNP [dm6]	T	C	1.448e^-4	0.375	SYNONYMOUS_CODING mgr UPSTREAM Irbp DOWNSTREAM mRpL40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	3061945	3R_3061945_SNP [dm3] 3R_7236223_SNP [dm6]	C	G	1.454e^-4	0.375	INTRON CG14608
2L	12533459	2L_12533459_SNP [dm3] 2L_12533459_SNP [dm6]	C	T	1.454e^-4	0.375	INTRON bun
3L	14762515	3L_14762515_SNP [dm3] 3L_14769415_SNP [dm6]	A	C	1.457e^-4	0.375	UTR_3_PRIME mop UPSTREAM CG17173
3L	396912	3L_396912_SNP [dm3] 3L_396912_SNP [dm6]	A	T	1.457e^-4	0.375	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	16006372	3L_16006372_SNP [dm3] 3L_16013272_SNP [dm6]	T	A	1.458e^-4	0.375	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2098046	2L_2098046_SNP [dm3] 2L_2098046_SNP [dm6]	G	A	1.462e^-4	0.375	INTRON dpr3
3R	3013003	3R_3013003_SNP [dm3] 3R_7187281_SNP [dm6]	C	G	1.468e^-4	0.375	UTR_5_PRIME lap UPSTREAM CG10055	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	501273	X_501273_DEL [dm3] X_607240_DEL [dm6]	AT	A	1.469e^-4	0.375	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	501332	X_501332_SNP [dm3] X_607299_SNP [dm6]	G	A	1.469e^-4	0.375	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	9497822	3L_9497822_SNP [dm3] 3L_9504722_SNP [dm6]	G	A	1.473e^-4	0.375	INTRON path	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2795906	3R_2795906_SNP [dm3] 3R_6970184_SNP [dm6]	A	G	1.474e^-4	0.375	INTRON Antp
X	19686411	X_19686411_SNP [dm3] X_19792378_SNP [dm6]	A	T	1.474e^-4	0.375	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3945352	2L_3945352_SNP [dm3] 2L_3945352_SNP [dm6]	G	A	1.475e^-4	0.375	INTRON fred
3R	13435212	3R_13435212_SNP [dm3] 3R_17609490_SNP [dm6]	G	C	1.479e^-4	0.376	NON_SYNONYMOUS_CODING CG14329 DOWNSTREAM sll
2R	8844256	2R_8844256_SNP [dm3] 2R_12956751_SNP [dm6]	G	T	1.481e^-4	0.376	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_ttk
3L	9734737	3L_9734737_SNP [dm3] 3L_9741637_SNP [dm6]	T	G	1.488e^-4	0.377	INTRON CG42268 & 1 other
X	19685229	X_19685229_SNP [dm3] X_19791196_SNP [dm6]	A	T	1.495e^-4	0.378	INTERGENIC
3L	13165349	3L_13165349_SNP [dm3] 3L_13172249_SNP [dm6]	C	T	1.495e^-4	0.378	INTERGENIC
2L	13844827	2L_13844827_SNP [dm3] 2L_13844827_SNP [dm6]	T	A	1.500e^-4	0.378	SYNONYMOUS_CODING CG8997 INTRON CenG1A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14082541	2R_14082541_SNP [dm3] 2R_18195036_SNP [dm6]	G	T	1.507e^-4	0.378	INTERGENIC
X	7150324	X_7150324_SNP [dm3] X_7256291_SNP [dm6]	C	T	1.509e^-4	0.378	INTRON CR44357	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22824973	3R_22824973_INS [dm3] 3R_26999251_INS [dm6]	T	TAGAGGCAT	1.512e^-4	0.378	UPSTREAM CG31077 INTRON RYa-R
3R	10779920	3R_10779920_INS [dm3] 3R_14954198_INS [dm6]	A	ATA	1.512e^-4	0.378	INTERGENIC
3R	10779923	3R_10779923_INS [dm3] 3R_14954201_INS [dm6]	T	TTAT	1.512e^-4	0.378	INTERGENIC
3L	18275522	3L_18275522_SNP [dm3] 3L_18282422_SNP [dm6]	G	A	1.512e^-4	0.378	INTERGENIC
3L	16096869	3L_16096869_SNP [dm3] 3L_16103769_SNP [dm6]	T	C	1.513e^-4	0.378	SYNONYMOUS_CODING IntS9 DOWNSTREAM CG5414
3L	9742196	3L_9742196_SNP [dm3] 3L_9749096_SNP [dm6]	G	T	1.519e^-4	0.379	INTRON CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	13739265	2L_13739265_SNP [dm3] 2L_13739265_SNP [dm6]	G	C	1.521e^-4	0.379	INTERGENIC
3R	23990554	3R_23990554_SNP [dm3] 3R_28164832_SNP [dm6]	G	A	1.526e^-4	0.38	INTRON CG34354
3L	16100933	3L_16100933_SNP [dm3] 3L_16107833_SNP [dm6]	C	T	1.529e^-4	0.38	UTR_3_PRIME Zn72D INTRON Zn72D
2L	12162574	2L_12162574_SNP [dm3] 2L_12162574_SNP [dm6]	G	A	1.535e^-4	0.381	UTR_3_PRIME CG31861 INTRON CG31760
3R	21732354	3R_21732354_SNP [dm3] 3R_25906632_SNP [dm6]	C	A	1.537e^-4	0.381	UPSTREAM CG42235 INTRON CR43259
2L	12162081	2L_12162081_SNP [dm3] 2L_12162081_SNP [dm6]	A	G	1.539e^-4	0.381	SYNONYMOUS_CODING CG31861 INTRON CG31760
X	19686413	X_19686413_SNP [dm3] X_19792380_SNP [dm6]	T	A	1.544e^-4	0.381	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3010329	3R_3010329_SNP [dm3] 3R_7184607_SNP [dm6]	G	T	1.546e^-4	0.381	NON_SYNONYMOUS_CODING CG10055 DOWNSTREAM sas	TF binding site mE1_TFBS_cad
2R	14557401	2R_14557401_SNP [dm3] 2R_18669896_SNP [dm6]	T	A	1.550e^-4	0.381	INTRON edl
3R	16803345	3R_16803345_SNP [dm3] 3R_20977623_SNP [dm6]	T	C	1.551e^-4	0.381	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10742970	3R_10742970_SNP [dm3] 3R_14917248_SNP [dm6]	A	G	1.552e^-4	0.381	INTERGENIC
2R	11888926	2R_11888926_SNP [dm3] 2R_16001421_SNP [dm6]	T	A	1.552e^-4	0.381	UTR_5_PRIME CG8370 UPSTREAM CG8370 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21457779	3R_21457779_SNP [dm3] 3R_25632057_SNP [dm6]	A	G	1.559e^-4	0.381	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1091154	2L_1091154_SNP [dm3] 2L_1091154_SNP [dm6]	G	A	1.561e^-4	0.381	INTRON CG4629
3L	9735748	3L_9735748_DEL [dm3] 3L_9742648_DEL [dm6]	TC	T	1.566e^-4	0.381	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4841845	3L_4841845_SNP [dm3] 3L_4841845_SNP [dm6]	T	G	1.570e^-4	0.381	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	23306081	3R_23306081_SNP [dm3] 3R_27480359_SNP [dm6]	C	T	1.578e^-4	0.381	UTR_3_PRIME Cyp6a18
3R	23306082	3R_23306082_SNP [dm3] 3R_27480360_SNP [dm6]	T	A	1.578e^-4	0.381	UTR_3_PRIME Cyp6a18
3R	23306096	3R_23306096_SNP [dm3] 3R_27480374_SNP [dm6]	T	C	1.578e^-4	0.381	UTR_3_PRIME Cyp6a18
3R	7521700	3R_7521700_SNP [dm3] 3R_11695978_SNP [dm6]	C	T	1.579e^-4	0.381	UPSTREAM CG14717 INTERGENIC
3L	11656321	3L_11656321_SNP [dm3] 3L_11663221_SNP [dm6]	A	T	1.582e^-4	0.381	INTRON CG32085
2L	2225658	2L_2225658_SNP [dm3] 2L_2225658_SNP [dm6]	G	A	1.583e^-4	0.381	UTR_3_PRIME CG15387 UPSTREAM rti DOWNSTREAM papi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	6041676	3L_6041676_SNP [dm3] 3L_6048576_SNP [dm6]	G	A	1.584e^-4	0.381	INTERGENIC
2L	8590717	2L_8590717_SNP [dm3] 2L_8590717_SNP [dm6]	A	C	1.585e^-4	0.381	INTRON Sema-1a & 1 other
3R	6152836	3R_6152836_SNP [dm3] 3R_10327114_SNP [dm6]	C	T	1.589e^-4	0.381	NON_SYNONYMOUS_CODING Bruce	TF binding site mE1_TFBS_sens
3R	18569448	3R_18569448_SNP [dm3] 3R_22743726_SNP [dm6]	G	T	1.592e^-4	0.381	NON_SYNONYMOUS_CODING vret DOWNSTREAM CG6985	TF binding site mE1_TFBS_cad
3L	1395076	3L_1395076_INS [dm3] 3L_1395076_INS [dm6]	T	TCT	1.598e^-4	0.381	INTRON Ptp61F
3R	7229972	3R_7229972_SNP [dm3] 3R_11404250_SNP [dm6]	G	A	1.600e^-4	0.381	UTR_3_PRIME pros
2L	13877348	2L_13877348_SNP [dm3] 2L_13877348_SNP [dm6]	C	T	1.603e^-4	0.381	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15676086	X_15676086_SNP [dm3] X_15782053_SNP [dm6]	G	T	1.603e^-4	0.381	INTRON Efhc1.1	TF binding site mE1_TFBS_cad
3R	3041446	3R_3041446_SNP [dm3] 3R_7215724_SNP [dm6]	A	G	1.603e^-4	0.381	SYNONYMOUS_CODING CG14606
3R	18892070	3R_18892070_SNP [dm3] 3R_23066348_SNP [dm6]	T	C	1.604e^-4	0.381	INTRON CG17111
3L	9739541	3L_9739541_SNP [dm3] 3L_9746441_SNP [dm6]	A	G	1.605e^-4	0.381	INTRON CG42268
3L	4167483	3L_4167483_SNP [dm3] 3L_4167483_SNP [dm6]	G	C	1.612e^-4	0.381	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1292451	2L_1292451_SNP [dm3] 2L_1292451_SNP [dm6]	C	G	1.613e^-4	0.381	INTRON robo3
2L	1292465	2L_1292465_SNP [dm3] 2L_1292465_SNP [dm6]	T	A	1.613e^-4	0.381	INTRON robo3
2L	3054611	2L_3054611_SNP [dm3] 2L_3054611_SNP [dm6]	T	C	1.613e^-4	0.381	SYNONYMOUS_CODING v_2_k05816	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10666117	2L_10666117_SNP [dm3] 2L_10666117_SNP [dm6]	C	A	1.616e^-4	0.381	INTRON CG31871
3L	16272840	3L_16272840_SNP [dm3] 3L_16279740_SNP [dm6]	G	A	1.616e^-4	0.381	UPSTREAM CG13050 & 1 other INTERGENIC
3L	6912973	3L_6912973_SNP [dm3] 3L_6919873_SNP [dm6]	A	G	1.619e^-4	0.381	INTERGENIC
2L	12628003	2L_12628003_SNP [dm3] 2L_12628003_SNP [dm6]	T	A	1.620e^-4	0.381	UTR_3_PRIME nub INTRON Ref2
2R	16575271	2R_16575271_SNP [dm3] 2R_20687766_SNP [dm6]	G	C	1.622e^-4	0.381	UPSTREAM Gr57a INTERGENIC
2L	10485209	2L_10485209_SNP [dm3] 2L_10485209_SNP [dm6]	A	T	1.623e^-4	0.381	DOWNSTREAM CG7456 INTRON Grip75	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8474838	3L_8474838_DEL [dm3] 3L_8481738_DEL [dm6]	GCACT	C	1.624e^-4	0.381	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8445518	X_8445518_SNP [dm3] X_8551485_SNP [dm6]	A	G	1.627e^-4	0.381	DOWNSTREAM Nrg INTRON Nrg	TF binding site mE1_TFBS_HSA
2R	20229090	2R_20229090_SNP [dm3] 2R_24341567_SNP [dm6]	T	C	1.628e^-4	0.381	INTERGENIC	TF binding site mE1_TFBS_cad
X	8292733	X_8292733_SNP [dm3] X_8398700_SNP [dm6]	C	G	1.629e^-4	0.381	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3013993	3R_3013993_SNP [dm3] 3R_7188271_SNP [dm6]	C	T	1.630e^-4	0.381	INTRON lap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10269112	3L_10269112_SNP [dm3] 3L_10276012_SNP [dm6]	C	T	1.630e^-4	0.381	INTERGENIC
3L	14460693	3L_14460693_SNP [dm3] 3L_14467593_SNP [dm6]	A	T	1.630e^-4	0.381	INTRON bbg	TF binding site BDTNP1_TFBS_hb
3L	6042381	3L_6042381_SNP [dm3] 3L_6049281_SNP [dm6]	A	G	1.632e^-4	0.381	INTERGENIC
2L	1932265	2L_1932265_SNP [dm3] 2L_1932265_SNP [dm6]	C	T	1.634e^-4	0.381	INTRON CG7337
3R	18524444	3R_18524444_SNP [dm3] 3R_22698722_SNP [dm6]	A	G	1.635e^-4	0.381	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2677143	3R_2677143_SNP [dm3] 3R_6851421_SNP [dm6]	C	T	1.641e^-4	0.382	INTERGENIC	regulatory region REDfly_CRMs
3L	11656813	3L_11656813_SNP [dm3] 3L_11663713_SNP [dm6]	A	C	1.642e^-4	0.382	INTRON CG32085	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17177346	3R_17177346_SNP [dm3] 3R_21351624_SNP [dm6]	G	T	1.645e^-4	0.382	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_HSA
2R	10463548	2R_10463548_SNP [dm3] 2R_14576043_SNP [dm6]	C	A	1.645e^-4	0.382	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10779990	3R_10779990_SNP [dm3] 3R_14954268_SNP [dm6]	T	C	1.652e^-4	0.383	INTERGENIC
3R	7394907	3R_7394907_SNP [dm3] 3R_11569185_SNP [dm6]	G	A	1.665e^-4	0.385	UPSTREAM Mrp4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2855547	3R_2855547_SNP [dm3] 3R_7029825_SNP [dm6]	T	G	1.665e^-4	0.385	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11448609	3L_11448609_SNP [dm3] 3L_11455509_SNP [dm6]	C	G	1.669e^-4	0.385	INTERGENIC
3R	22346735	3R_22346735_INS [dm3] 3R_26521013_INS [dm6]	C	CCA	1.671e^-4	0.386	INTRON plum EXON CR45226
X	1497195	X_1497195_SNP [dm3] X_1603162_SNP [dm6]	C	T	1.677e^-4	0.386	INTRON br & 1 other
3L	12558793	3L_12558793_SNP [dm3] 3L_12565693_SNP [dm6]	A	T	1.677e^-4	0.386	INTRON sowah	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13955591	2L_13955591_SNP [dm3] 2L_13955591_SNP [dm6]	T	C	1.683e^-4	0.387	UTR_3_PRIME Ance-3
3L	16706960	3L_16706960_SNP [dm3] 3L_16713860_SNP [dm6]	C	A	1.689e^-4	0.387	UTR_5_PRIME Dab INTRON Dab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	18278151	2R_18278151_SNP [dm3] 2R_22390646_SNP [dm6]	A	G	1.689e^-4	0.387	INTRON CG13506
3R	17177224	3R_17177224_SNP [dm3] 3R_21351502_SNP [dm6]	A	T	1.690e^-4	0.387	DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8975384	2L_8975384_SNP [dm3] 2L_8975384_SNP [dm6]	T	A	1.691e^-4	0.387	UTR_5_PRIME CG9541 UPSTREAM CG9541	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	1658647	2L_1658647_SNP [dm3] 2L_1658647_SNP [dm6]	C	T	1.696e^-4	0.387	INTRON chinmo	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	20756390	2L_20756390_SNP [dm3] 2L_20756390_SNP [dm6]	G	A	1.697e^-4	0.387	SYNONYMOUS_CODING CG9323
3L	6060049	3L_6060049_SNP [dm3] 3L_6066949_SNP [dm6]	T	C	1.699e^-4	0.387	INTRON CG42269
X	13760760	X_13760760_SNP [dm3] X_13866727_SNP [dm6]	C	T	1.702e^-4	0.387	UTR_3_PRIME mamo INTRON mamo
2L	20774286	2L_20774286_SNP [dm3] 2L_20774286_SNP [dm6]	A	G	1.708e^-4	0.388	INTRON cad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	3082504	3R_3082504_SNP [dm3] 3R_7256782_SNP [dm6]	T	A	1.711e^-4	0.388	INTRON Gld
3L	5235616	3L_5235616_SNP [dm3] 3L_5242516_SNP [dm6]	A	C	1.711e^-4	0.388	INTRON shep
2R	18070490	2R_18070490_SNP [dm3] 2R_22182985_SNP [dm6]	G	A	1.713e^-4	0.388	UPSTREAM MED16 & 1 other DOWNSTREAM CG11275 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	1707607	2L_1707607_SNP [dm3] 2L_1707607_SNP [dm6]	C	T	1.725e^-4	0.389	UTR_3_PRIME CG17660 UPSTREAM CR44976 DOWNSTREAM cpb	TF binding site mE1_TFBS_cad
2L	7181315	2L_7181315_SNP [dm3] 2L_7181315_SNP [dm6]	A	T	1.726e^-4	0.389	UPSTREAM CG4495 INTERGENIC
3R	23597571	3R_23597571_SNP [dm3] 3R_27771849_SNP [dm6]	T	C	1.727e^-4	0.389	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13911429	3L_13911429_SNP [dm3] 3L_13918329_SNP [dm6]	C	A	1.728e^-4	0.389	INTRON Rgl
2L	1213203	2L_1213203_SNP [dm3] 2L_1213203_SNP [dm6]	G	T	1.731e^-4	0.39	INTERGENIC
2R	10964144	2R_10964144_SNP [dm3] 2R_15076639_SNP [dm6]	A	G	1.735e^-4	0.39	INTERGENIC
X	11935194	X_11935194_SNP [dm3] X_12041161_SNP [dm6]	C	G	1.736e^-4	0.39	INTERGENIC
3R	22581739	3R_22581739_SNP [dm3] 3R_26756017_SNP [dm6]	C	T	1.738e^-4	0.39	DOWNSTREAM CR45562 INTERGENIC
2L	13955598	2L_13955598_SNP [dm3] 2L_13955598_SNP [dm6]	G	A	1.740e^-4	0.39	UTR_3_PRIME Ance-3
3R	10742973	3R_10742973_SNP [dm3] 3R_14917251_SNP [dm6]	G	T	1.742e^-4	0.39	INTERGENIC
3L	16463815	3L_16463815_SNP [dm3] 3L_16470715_SNP [dm6]	C	T	1.745e^-4	0.39	UTR_3_PRIME aos INTRON CG33158
3L	19281940	3L_19281940_SNP [dm3] 3L_19288840_SNP [dm6]	T	C	1.747e^-4	0.39	UPSTREAM Gbs-76A INTRON Gbs-76A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6936486	2L_6936486_SNP [dm3] 2L_6936486_SNP [dm6]	T	G	1.748e^-4	0.39	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12595041	2L_12595041_SNP [dm3] 2L_12595041_SNP [dm6]	C	A	1.750e^-4	0.39	INTRON nub
2L	17521449	2L_17521449_SNP [dm3] 2L_17521449_SNP [dm6]	G	A	1.751e^-4	0.39	SYNONYMOUS_CODING CG15143 INTRON Dhc36C
2L	10481373	2L_10481373_SNP [dm3] 2L_10481373_SNP [dm6]	T	C	1.755e^-4	0.39	SYNONYMOUS_CODING RluA-2
3R	19079820	3R_19079820_SNP [dm3] 3R_23254098_SNP [dm6]	T	A	1.757e^-4	0.39	SYNONYMOUS_CODING EloA DOWNSTREAM wda
3L	11178750	3L_11178750_SNP [dm3] 3L_11185650_SNP [dm6]	T	C	1.759e^-4	0.39	INTRON GlcAT-P
2L	4928839	2L_4928839_SNP [dm3] 2L_4928839_SNP [dm6]	C	T	1.761e^-4	0.39	UPSTREAM hoe1 INTRON hoe1
3R	11021447	3R_11021447_SNP [dm3] 3R_15195725_SNP [dm6]	G	A	1.769e^-4	0.39	SYNONYMOUS_CODING CG6752 UPSTREAM CG42542	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	10779915	3R_10779915_DEL [dm3] 3R_14954193_DEL [dm6]	TT	T	1.770e^-4	0.39	INTERGENIC
2L	14627387	2L_14627387_SNP [dm3] 2L_14627387_SNP [dm6]	T	A	1.770e^-4	0.39	INTRON osp	TF binding site BDTNP1_TFBS_dl
3L	19313610	3L_19313610_SNP [dm3] 3L_19320510_SNP [dm6]	C	T	1.771e^-4	0.39	INTRON pip
2L	10776275	2L_10776275_SNP [dm3] 2L_10776275_SNP [dm6]	G	A	1.772e^-4	0.39	INTRON CG31869
3R	26299661	3R_26299661_SNP [dm3] 3R_30473939_SNP [dm6]	G	C	1.774e^-4	0.39	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da
X	9328145	X_9328145_SNP [dm3] X_9434112_SNP [dm6]	G	A	1.780e^-4	0.391	INTRON mgl
3R	11022815	3R_11022815_SNP [dm3] 3R_15197093_SNP [dm6]	G	A	1.786e^-4	0.392	UTR_5_PRIME CG42542 UPSTREAM CG6752 INTRON CG42542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Ubx
3L	11524617	3L_11524617_SNP [dm3] 3L_11531517_SNP [dm6]	T	G	1.788e^-4	0.392	INTRON Mob2
2L	8601553	2L_8601553_SNP [dm3] 2L_8601553_SNP [dm6]	T	A	1.793e^-4	0.392	INTRON Sema-1a
3R	2962033	3R_2962033_SNP [dm3] 3R_7136311_SNP [dm6]	G	A	1.794e^-4	0.392	UTR_5_PRIME Fer1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6997049	3L_6997049_SNP [dm3] 3L_7003949_SNP [dm6]	G	A	1.797e^-4	0.392	INTRON Mp
3L	11180156	3L_11180156_SNP [dm3] 3L_11187056_SNP [dm6]	T	C	1.797e^-4	0.392	INTRON GlcAT-P
X	4323541	X_4323541_SNP [dm3] X_4429508_SNP [dm6]	A	C	1.797e^-4	0.392	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	19390248	2R_19390248_SNP [dm3] 2R_23502725_SNP [dm6]	G	T	1.801e^-4	0.392	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_inv
X	9766972	X_9766972_SNP [dm3] X_9872939_SNP [dm6]	G	A	1.807e^-4	0.392	UTR_3_PRIME CG32695 DOWNSTREAM CG32695
3R	2835071	3R_2835071_SNP [dm3] 3R_7009349_SNP [dm6]	G	T	1.811e^-4	0.392	INTERGENIC
3L	6247404	3L_6247404_SNP [dm3] 3L_6254304_SNP [dm6]	A	C	1.813e^-4	0.392	INTRON Best2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17763983	2R_17763983_SNP [dm3] 2R_21876478_SNP [dm6]	A	T	1.814e^-4	0.392	INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12143209	2R_12143209_SNP [dm3] 2R_16255704_SNP [dm6]	G	A	1.819e^-4	0.392	INTRON CngA
2L	1616819	2L_1616819_SNP [dm3] 2L_1616819_SNP [dm6]	A	C	1.823e^-4	0.392	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19011850	2R_19011850_SNP [dm3] 2R_23124327_SNP [dm6]	T	A	1.824e^-4	0.392	SYNONYMOUS_CODING Klp59C	TF binding site mE1_TFBS_chinmo
3R	12710810	3R_12710810_SNP [dm3] 3R_16885088_SNP [dm6]	T	C	1.826e^-4	0.392	INTRON iab-8
3R	26161334	3R_26161334_SNP [dm3] 3R_30335612_SNP [dm6]	G	A	1.826e^-4	0.392	INTRON hdc
X	501280	X_501280_DEL [dm3] X_607247_DEL [dm6]	GTT	G	1.830e^-4	0.392	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	501287	X_501287_DEL [dm3] X_607254_DEL [dm6]	GACCC	A	1.830e^-4	0.392	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	13907555	2L_13907555_SNP [dm3] 2L_13907555_SNP [dm6]	A	T	1.832e^-4	0.392	INTRON Ance	TF binding site mE1_TFBS_cad
3R	23199192	3R_23199192_SNP [dm3] 3R_27373470_SNP [dm6]	A	G	1.833e^-4	0.392	DOWNSTREAM CG42534 INTERGENIC
3L	13259708	3L_13259708_SNP [dm3] 3L_13266608_SNP [dm6]	G	A	1.834e^-4	0.392	INTRON caps
3L	19433785	3L_19433785_SNP [dm3] 3L_19440685_SNP [dm6]	C	A	1.834e^-4	0.392	INTRON CR45732
3L	8474530	3L_8474530_INS [dm3] 3L_8481430_INS [dm6]	C	CAAGCTCC	1.842e^-4	0.392	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15186313	3R_15186313_SNP [dm3] 3R_19360591_SNP [dm6]	T	A	1.842e^-4	0.392	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12154497	2L_12154497_SNP [dm3] 2L_12154497_SNP [dm6]	G	A	1.843e^-4	0.392	INTRON CG31760
2L	4928825	2L_4928825_SNP [dm3] 2L_4928825_SNP [dm6]	T	A	1.843e^-4	0.392	UPSTREAM hoe1 INTRON hoe1
2R	19011852	2R_19011852_SNP [dm3] 2R_23124329_SNP [dm6]	G	A	1.846e^-4	0.392	NON_SYNONYMOUS_CODING Klp59C	TF binding site mE1_TFBS_chinmo
3L	12722081	3L_12722081_SNP [dm3] 3L_12728981_SNP [dm6]	T	C	1.849e^-4	0.392	INTERGENIC
3L	18287499	3L_18287499_SNP [dm3] 3L_18294399_SNP [dm6]	T	A	1.851e^-4	0.392	UPSTREAM CR43306 & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3L	9742734	3L_9742734_SNP [dm3] 3L_9749634_SNP [dm6]	G	A	1.852e^-4	0.392	NON_SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18570626	3R_18570626_SNP [dm3] 3R_22744904_SNP [dm6]	A	C	1.855e^-4	0.392	NON_SYNONYMOUS_CODING vret UPSTREAM HP1c	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14240292	2L_14240292_SNP [dm3] 2L_14240292_SNP [dm6]	G	A	1.856e^-4	0.392	UPSTREAM CR44216 INTERGENIC
3R	7445242	3R_7445242_SNP [dm3] 3R_11619520_SNP [dm6]	T	C	1.856e^-4	0.392	UPSTREAM CG14710 INTRON Jupiter	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	3054625	2L_3054625_DEL [dm3] 2L_3054625_DEL [dm6]	TTCCAT	A	1.862e^-4	0.392	SPLICE_SITE_DONOR v_2_k05816 SPLICE_SITE_REGION v_2_k05816 INTRON v_2_k05816	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	8445511	X_8445511_SNP [dm3] X_8551478_SNP [dm6]	T	C	1.864e^-4	0.392	DOWNSTREAM Nrg INTRON Nrg	TF binding site mE1_TFBS_HSA
3L	5600000	3L_5600000_INS [dm3] 3L_5606900_INS [dm6]	T	TGATAAATAATCAT...	1.869e^-4	0.392	UTR_3_PRIME mthl2 DOWNSTREAM Eaf6
2L	1582483	2L_1582483_SNP [dm3] 2L_1582483_SNP [dm6]	A	G	1.870e^-4	0.392	INTRON haf
2L	1582486	2L_1582486_MNP [dm3] 2L_1582486_MNP [dm6]	GTA	TAT	1.870e^-4	0.392	INTRON haf
2L	1582498	2L_1582498_SNP [dm3] 2L_1582498_SNP [dm6]	T	G	1.870e^-4	0.392	INTRON haf
3L	8633394	3L_8633394_SNP [dm3] 3L_8640294_SNP [dm6]	T	G	1.871e^-4	0.392	UPSTREAM Cpr66D INTERGENIC
2L	15120416	2L_15120416_SNP [dm3] 2L_15120416_SNP [dm6]	A	G	1.877e^-4	0.392	EXON CR43853
3R	24454972	3R_24454972_INS [dm3] 3R_28629250_INS [dm6]	G	GA	1.880e^-4	0.392	INTRON CG10011
3R	22857431	3R_22857431_SNP [dm3] 3R_27031709_SNP [dm6]	C	T	1.882e^-4	0.392	INTRON RYa-R
2L	2096692	2L_2096692_SNP [dm3] 2L_2096692_SNP [dm6]	T	G	1.883e^-4	0.392	INTRON dpr3
3R	3058237	3R_3058237_SNP [dm3] 3R_7232515_SNP [dm6]	G	A	1.884e^-4	0.392	INTRON CG14608
3L	11134015	3L_11134015_SNP [dm3] 3L_11140915_SNP [dm6]	G	C	1.888e^-4	0.392	INTRON CG32082
3R	15756723	3R_15756723_SNP [dm3] 3R_19931001_SNP [dm6]	A	G	1.892e^-4	0.392	DOWNSTREAM mira INTRON Hs6st	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	1353943	2L_1353943_SNP [dm3] 2L_1353943_SNP [dm6]	C	T	1.896e^-4	0.392	SYNONYMOUS_CODING CG5561 DOWNSTREAM CG31924 & 1 other
X	501278	X_501278_SNP [dm3] X_607245_SNP [dm6]	T	A	1.897e^-4	0.392	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	8914577	2L_8914577_SNP [dm3] 2L_8914577_SNP [dm6]	C	A	1.898e^-4	0.392	INTRON CG34398
X	19686410	X_19686410_SNP [dm3] X_19792377_SNP [dm6]	A	T	1.898e^-4	0.392	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3496311	3L_3496311_SNP [dm3] 3L_3496311_SNP [dm6]	A	G	1.899e^-4	0.392	INTRON CG42324
2L	3817632	2L_3817632_SNP [dm3] 2L_3817632_SNP [dm6]	T	A	1.899e^-4	0.392	UPSTREAM CR44077 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16458876	3L_16458876_SNP [dm3] 3L_16465776_SNP [dm6]	A	T	1.900e^-4	0.392	INTRON CG33158
2R	15719466	2R_15719466_SNP [dm3] 2R_19831961_SNP [dm6]	A	T	1.909e^-4	0.393	UTR_3_PRIME Toll-7
2L	14240663	2L_14240663_SNP [dm3] 2L_14240663_SNP [dm6]	A	G	1.911e^-4	0.393	UPSTREAM CR44216 INTERGENIC
3R	10855251	3R_10855251_SNP [dm3] 3R_15029529_SNP [dm6]	G	A	1.911e^-4	0.393	INTERGENIC
2R	12292072	2R_12292072_SNP [dm3] 2R_16404567_SNP [dm6]	G	A	1.912e^-4	0.393	INTRON Sema-2b
3R	26001618	3R_26001618_SNP [dm3] 3R_30175896_SNP [dm6]	C	T	1.918e^-4	0.393	UTR_3_PRIME CG1983 DOWNSTREAM CG1983	regulatory region REDfly_CRMs
3R	20165183	3R_20165183_SNP [dm3] 3R_24339461_SNP [dm6]	T	C	1.918e^-4	0.393	DOWNSTREAM mir-1015 INTRON CG6432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10463557	2R_10463557_SNP [dm3] 2R_14576052_SNP [dm6]	G	A	1.924e^-4	0.393	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10463634	2R_10463634_SNP [dm3] 2R_14576129_SNP [dm6]	G	T	1.924e^-4	0.393	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20772452	2L_20772452_SNP [dm3] 2L_20772452_SNP [dm6]	G	A	1.924e^-4	0.393	INTRON cad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15745915	2R_15745915_SNP [dm3] 2R_19858410_SNP [dm6]	T	A	1.933e^-4	0.394	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	8684616	3L_8684616_SNP [dm3] 3L_8691516_SNP [dm6]	A	T	1.933e^-4	0.394	INTERGENIC
3L	16706876	3L_16706876_SNP [dm3] 3L_16713776_SNP [dm6]	T	A	1.934e^-4	0.394	UTR_5_PRIME Dab INTRON Dab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7093486	3L_7093486_SNP [dm3] 3L_7100386_SNP [dm6]	C	T	1.938e^-4	0.394	INTRON form3
3L	1780396	3L_1780396_SNP [dm3] 3L_1780396_SNP [dm6]	T	G	1.943e^-4	0.394	INTRON alpha-Spec
3R	15183283	3R_15183283_DEL [dm3] 3R_19357561_DEL [dm6]	AAA	A	1.948e^-4	0.394	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
3L	281155	3L_281155_SNP [dm3] 3L_281155_SNP [dm6]	A	G	1.950e^-4	0.394	SYNONYMOUS_CODING RhoGEF3	TF binding site mE1_TFBS_chinmo
2R	12297487	2R_12297487_SNP [dm3] 2R_16409982_SNP [dm6]	C	A	1.952e^-4	0.394	INTRON Sema-2b
2L	15095205	2L_15095205_SNP [dm3] 2L_15095205_SNP [dm6]	T	G	1.953e^-4	0.394	INTRON CG15270
3L	21332255	3L_21332255_SNP [dm3] 3L_21339155_SNP [dm6]	C	T	1.954e^-4	0.394	NON_SYNONYMOUS_CODING CG7324 DOWNSTREAM CG7338	TF binding site mE1_TFBS_cad
3L	9734098	3L_9734098_SNP [dm3] 3L_9740998_SNP [dm6]	C	A	1.956e^-4	0.394	UPSTREAM CR44348 INTRON CG42268
3L	5346965	3L_5346965_SNP [dm3] 3L_5353865_SNP [dm6]	A	G	1.958e^-4	0.394	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8571967	2L_8571967_SNP [dm3] 2L_8571967_SNP [dm6]	G	C	1.958e^-4	0.394	INTRON Sema-1a
2L	12377328	2L_12377328_SNP [dm3] 2L_12377328_SNP [dm6]	T	A	1.959e^-4	0.394	INTRON bru-2
2L	12580484	2L_12580484_SNP [dm3] 2L_12580484_SNP [dm6]	G	A	1.966e^-4	0.394	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	10653958	2R_10653958_SNP [dm3] 2R_14766453_SNP [dm6]	T	A	1.967e^-4	0.394	INTRON Spred	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9583362	2L_9583362_SNP [dm3] 2L_9583362_SNP [dm6]	C	G	1.970e^-4	0.394	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8968019	2L_8968019_SNP [dm3] 2L_8968019_SNP [dm6]	G	T	1.972e^-4	0.394	DOWNSTREAM CG32984 INTRON CG18088
2L	1485092	2L_1485092_SNP [dm3] 2L_1485092_SNP [dm6]	G	A	1.973e^-4	0.394	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20598254	2R_20598254_SNP [dm3] 2R_24710731_SNP [dm6]	A	G	1.973e^-4	0.394	INTRON Mid1
3L	16111559	3L_16111559_DEL [dm3] 3L_16118459_DEL [dm6]	TG	T	1.976e^-4	0.394	INTRON Taf4	TF binding site mE1_TFBS_cad
2L	1677010	2L_1677010_SNP [dm3] 2L_1677010_SNP [dm6]	A	G	1.979e^-4	0.394	INTRON chinmo
3L	16101074	3L_16101074_SNP [dm3] 3L_16107974_SNP [dm6]	G	T	1.979e^-4	0.394	UTR_3_PRIME Zn72D INTRON Zn72D
3L	11902656	3L_11902656_SNP [dm3] 3L_11909556_SNP [dm6]	C	T	1.984e^-4	0.395	INTRON CG44837
3R	10891597	3R_10891597_SNP [dm3] 3R_15065875_SNP [dm6]	G	A	1.985e^-4	0.395	INTRON dpr9
2L	13877342	2L_13877342_SNP [dm3] 2L_13877342_SNP [dm6]	C	G	1.987e^-4	0.395	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24643129	3R_24643129_SNP [dm3] 3R_28817407_SNP [dm6]	C	T	1.988e^-4	0.395	UTR_3_PRIME CG1523 DOWNSTREAM CG1646	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8401583	2L_8401583_SNP [dm3] 2L_8401583_SNP [dm6]	A	T	1.992e^-4	0.395	UTR_3_PRIME fy & 1 other
2L	13877269	2L_13877269_SNP [dm3] 2L_13877269_SNP [dm6]	C	A	1.993e^-4	0.395	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	12496762	2L_12496762_SNP [dm3] 2L_12496762_SNP [dm6]	T	A	1.994e^-4	0.395	NON_SYNONYMOUS_CODING t-cup INTRON bun
3R	23142902	3R_23142902_SNP [dm3] 3R_27317180_SNP [dm6]	G	T	1.998e^-4	0.395	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	9509061	2L_9509061_DEL [dm3] 2L_9509061_DEL [dm6]	TT	T	1.999e^-4	0.395	INTRON CG33298	TF binding site BDTNP1_TFBS_hb
3R	3014538	3R_3014538_SNP [dm3] 3R_7188816_SNP [dm6]	G	C	2.006e^-4	0.395	INTRON lap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	500500	X_500500_SNP [dm3] X_606467_SNP [dm6]	T	C	2.007e^-4	0.395	INTRON CG13366	TF binding site mE1_TFBS_sens
X	9003441	X_9003441_SNP [dm3] X_9109408_SNP [dm6]	C	A	2.016e^-4	0.396	UPSTREAM AP-1gamma INTRON AP-1gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	15050284	3L_15050284_SNP [dm3] 3L_15057184_SNP [dm6]	A	G	2.016e^-4	0.396	INTRON Sytbeta
3L	9732975	3L_9732975_SNP [dm3] 3L_9739875_SNP [dm6]	G	A	2.024e^-4	0.397	UPSTREAM CG42268 INTRON CG42268
3L	2808109	3L_2808109_SNP [dm3] 3L_2808109_SNP [dm6]	A	G	2.024e^-4	0.397	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	7397564	3R_7397564_SNP [dm3] 3R_11571842_SNP [dm6]	T	C	2.025e^-4	0.397	INTRON Mrp4	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13915454	X_13915454_SNP [dm3] X_14021421_SNP [dm6]	A	T	2.027e^-4	0.397	INTERGENIC
3L	4404238	3L_4404238_SNP [dm3] 3L_4404238_SNP [dm6]	A	T	2.030e^-4	0.397	DOWNSTREAM CG15019 INTRON Syx17	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24642518	3R_24642518_SNP [dm3] 3R_28816796_SNP [dm6]	A	G	2.035e^-4	0.397	SPLICE_SITE_REGION CG1646 SYNONYMOUS_CODING CG1646 UTR_3_PRIME CG1646 DOWNSTREAM CG1523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25068663	3R_25068663_SNP [dm3] 3R_29242941_SNP [dm6]	T	G	2.036e^-4	0.397	SYNONYMOUS_CODING CG31445
2R	10463587	2R_10463587_SNP [dm3] 2R_14576082_SNP [dm6]	G	A	2.040e^-4	0.398	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18318271	2L_18318271_SNP [dm3] 2L_18318271_SNP [dm6]	C	T	2.041e^-4	0.398	INTERGENIC
3L	253290	3L_253290_SNP [dm3] 3L_253290_SNP [dm6]	A	G	2.050e^-4	0.399	INTRON DIP2
3L	4056073	3L_4056073_SNP [dm3] 3L_4056073_SNP [dm6]	A	T	2.052e^-4	0.399	INTRON CG1136
3R	22988895	3R_22988895_SNP [dm3] 3R_27163173_SNP [dm6]	T	A	2.054e^-4	0.399	DOWNSTREAM CG5909 INTRON ppk31
3R	16803466	3R_16803466_SNP [dm3] 3R_20977744_SNP [dm6]	C	G	2.057e^-4	0.399	UPSTREAM Calx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20823958	X_20823958_SNP [dm3] X_20952931_SNP [dm6]	C	T	2.058e^-4	0.399	INTERGENIC
3L	6271435	3L_6271435_SNP [dm3] 3L_6278335_SNP [dm6]	G	A	2.063e^-4	0.399	INTERGENIC
3L	18300595	3L_18300595_SNP [dm3] 3L_18307495_SNP [dm6]	C	T	2.069e^-4	0.4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9003457	X_9003457_SNP [dm3] X_9109424_SNP [dm6]	T	A	2.074e^-4	0.4	UPSTREAM AP-1gamma INTRON AP-1gamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	2069203	2L_2069203_INS [dm3] 2L_2069203_INS [dm6]	T	TACTTCTCTGGGGAGGGGAG...	2.075e^-4	0.4	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2L	10975576	2L_10975576_SNP [dm3] 2L_10975576_SNP [dm6]	G	A	2.075e^-4	0.4	UTR_3_PRIME l_2_06225 UPSTREAM abo DOWNSTREAM l_2_06225	TF binding site BDTNP1_TFBS_dl
3L	9744482	3L_9744482_SNP [dm3] 3L_9751382_SNP [dm6]	T	C	2.082e^-4	0.401	UTR_5_PRIME CG42268 INTRON CG42268	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	478027	X_478027_SNP [dm3] X_583994_SNP [dm6]	C	T	2.084e^-4	0.401	INTRON vnd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7276565	3R_7276565_SNP [dm3] 3R_11450843_SNP [dm6]	A	T	2.088e^-4	0.401	INTRON CG17230 & 1 other
X	18496257	X_18496257_SNP [dm3] X_18602224_SNP [dm6]	C	T	2.091e^-4	0.401	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8582612	2L_8582612_SNP [dm3] 2L_8582612_SNP [dm6]	A	G	2.093e^-4	0.401	INTRON Sema-1a
3L	11180247	3L_11180247_SNP [dm3] 3L_11187147_SNP [dm6]	C	T	2.095e^-4	0.401	INTRON GlcAT-P
3L	1579350	3L_1579350_SNP [dm3] 3L_1579350_SNP [dm6]	A	T	2.098e^-4	0.401	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16108425	3L_16108425_SNP [dm3] 3L_16115325_SNP [dm6]	T	A	2.098e^-4	0.401	INTRON Taf4	TF binding site BDTNP1_TFBS_dl
X	1497192	X_1497192_INS [dm3] X_1603159_INS [dm6]	A	ACCCATGG	2.099e^-4	0.401	INTRON br & 1 other
3L	6059729	3L_6059729_SNP [dm3] 3L_6066629_SNP [dm6]	A	G	2.099e^-4	0.401	SYNONYMOUS_CODING CG42269	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15676143	X_15676143_SNP [dm3] X_15782110_SNP [dm6]	G	A	2.105e^-4	0.401	INTRON Efhc1.1
X	5547216	X_5547216_SNP [dm3] X_5653183_SNP [dm6]	A	T	2.110e^-4	0.401	UTR_3_PRIME CG42265
X	5547220	X_5547220_SNP [dm3] X_5653187_SNP [dm6]	T	G	2.110e^-4	0.401	UTR_3_PRIME CG42265
3R	19079829	3R_19079829_SNP [dm3] 3R_23254107_SNP [dm6]	G	A	2.111e^-4	0.401	SYNONYMOUS_CODING EloA DOWNSTREAM wda
X	8628588	X_8628588_SNP [dm3] X_8734555_SNP [dm6]	T	C	2.117e^-4	0.401	INTERGENIC
3R	10188101	3R_10188101_SNP [dm3] 3R_14362379_SNP [dm6]	T	C	2.119e^-4	0.401	UPSTREAM CG31320 INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8255617	2L_8255617_SNP [dm3] 2L_8255617_SNP [dm6]	T	A	2.120e^-4	0.401	INTRON CG8086
3L	2813588	3L_2813588_SNP [dm3] 3L_2813588_SNP [dm6]	G	T	2.122e^-4	0.401	INTRON CG43444
3R	5698724	3R_5698724_SNP [dm3] 3R_9873002_SNP [dm6]	G	A	2.125e^-4	0.401	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24452736	3R_24452736_SNP [dm3] 3R_28627014_SNP [dm6]	C	T	2.126e^-4	0.401	INTRON CG10011
2R	20385242	2R_20385242_SNP [dm3] 2R_24497719_SNP [dm6]	T	G	2.126e^-4	0.401	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9789957	2R_9789957_SNP [dm3] 2R_13902452_SNP [dm6]	C	T	2.128e^-4	0.401	INTRON shot	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	8625545	2L_8625545_SNP [dm3] 2L_8625545_SNP [dm6]	C	A	2.129e^-4	0.401	INTRON Sema-1a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	353638	X_353638_SNP [dm3] X_459605_SNP [dm6]	G	T	2.131e^-4	0.401	INTRON CG32816	regulatory region REDfly_CRMs
3L	4404245	3L_4404245_SNP [dm3] 3L_4404245_SNP [dm6]	T	A	2.138e^-4	0.402	DOWNSTREAM CG15019 INTRON Syx17	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16418344	2R_16418344_SNP [dm3] 2R_20530839_SNP [dm6]	T	A	2.140e^-4	0.402	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9895271	3L_9895271_SNP [dm3] 3L_9902171_SNP [dm6]	G	A	2.143e^-4	0.402	NON_SYNONYMOUS_CODING nudE SYNONYMOUS_CODING nudE DOWNSTREAM nudE

By genomic position
Variant impact
Gene name

neurBG2391/DGRP phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results