DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.245e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.03079

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.1838	0.0749
In_3R_Mo	5.1543	0.076

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2203 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	18431511	3L_18431511_SNP [dm3] 3L_18438411_SNP [dm6]	T	A	3.612e^-7	0.567	DOWNSTREAM skl INTERGENIC
3L	10918105	3L_10918105_SNP [dm3] 3L_10925005_SNP [dm6]	C	T	1.151e^-6	0.567	INTERGENIC
X	3155799	X_3155799_SNP [dm3] X_3261766_SNP [dm6]	C	A	1.360e^-6	0.567	INTRON dnc
2R	11857519	2R_11857519_SNP [dm3] 2R_15970014_SNP [dm6]	A	T	1.698e^-6	0.567	NON_SYNONYMOUS_CODING Strn-Mlck
3L	10599237	3L_10599237_DEL [dm3] 3L_10606137_DEL [dm6]	TCAAATGTTAGTGCT...	T	1.796e^-6	0.567	INTERGENIC
3L	14204670	3L_14204670_SNP [dm3] 3L_14211570_SNP [dm6]	C	T	1.813e^-6	0.567	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25871927	3R_25871927_SNP [dm3] 3R_30046205_SNP [dm6]	A	T	2.575e^-6	0.648	UPSTREAM CG7943 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	17296610	X_17296610_SNP [dm3] X_17402577_SNP [dm6]	C	G	3.610e^-6	0.648	UTR_3_PRIME B-H1
X	17296465	X_17296465_SNP [dm3] X_17402432_SNP [dm6]	A	G	3.766e^-6	0.648	UTR_3_PRIME B-H1	TF binding site BDTNP1_TFBS_da
3R	25871921	3R_25871921_SNP [dm3] 3R_30046199_SNP [dm6]	T	C	4.089e^-6	0.648	UPSTREAM CG7943 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13445732	3L_13445732_SNP [dm3] 3L_13452632_SNP [dm6]	T	C	4.095e^-6	0.648	INTRON CG10738
3L	5972654	3L_5972654_SNP [dm3] 3L_5979554_SNP [dm6]	A	T	4.145e^-6	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	11857520	2R_11857520_SNP [dm3] 2R_15970015_SNP [dm6]	T	C	5.737e^-6	0.671	NON_SYNONYMOUS_CODING Strn-Mlck
3L	11176286	3L_11176286_SNP [dm3] 3L_11183186_SNP [dm6]	T	C	5.884e^-6	0.671	INTRON GlcAT-P
3R	25341535	3R_25341535_SNP [dm3] 3R_29515813_SNP [dm6]	C	T	6.048e^-6	0.671	UTR_5_PRIME CG2014 INTRON CG2014	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
X	17300506	X_17300506_SNP [dm3] X_17406473_SNP [dm6]	G	A	6.716e^-6	0.671	INTERGENIC
X	17296879	X_17296879_SNP [dm3] X_17402846_SNP [dm6]	A	C	7.005e^-6	0.671	UTR_3_PRIME B-H1
3L	786642	3L_786642_SNP [dm3] 3L_786642_SNP [dm6]	G	A	7.515e^-6	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15331161	3L_15331161_SNP [dm3] 3L_15338061_SNP [dm6]	G	T	8.211e^-6	0.671	SYNONYMOUS_CODING Toll-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5200044	2L_5200044_SNP [dm3] 2L_5200044_SNP [dm6]	G	A	8.788e^-6	0.671	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11309855	3L_11309855_SNP [dm3] 3L_11316755_SNP [dm6]	C	T	9.219e^-6	0.671	DOWNSTREAM CR44361 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18575783	3R_18575783_SNP [dm3] 3R_22750061_SNP [dm6]	A	C	9.232e^-6	0.671	SYNONYMOUS_CODING rumi UPSTREAM Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14191225	3L_14191225_SNP [dm3] 3L_14198125_SNP [dm6]	C	A	9.260e^-6	0.671	INTRON nuf
X	17300539	X_17300539_SNP [dm3] X_17406506_SNP [dm6]	A	T	9.600e^-6	0.671	INTERGENIC
3L	1103268	3L_1103268_SNP [dm3] 3L_1103268_SNP [dm6]	G	T	9.961e^-6	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	19474031	3L_19474031_DEL [dm3] 3L_19480931_DEL [dm6]	CGA	C	9.998e^-6	0.671	INTERGENIC
3R	24826659	3R_24826659_SNP [dm3] 3R_29000937_SNP [dm6]	T	C	1.001e^-5	0.671	INTRON wat
2R	16950325	2R_16950325_SNP [dm3] 2R_21062820_SNP [dm6]	G	A	1.109e^-5	0.671	NON_SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25522287	3R_25522287_SNP [dm3] 3R_29696565_SNP [dm6]	G	A	1.112e^-5	0.671	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4892783	2L_4892783_SNP [dm3] 2L_4892783_SNP [dm6]	C	T	1.118e^-5	0.671	UPSTREAM CR45716 INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	20344556	X_20344556_INS [dm3] X_20473529_INS [dm6]	A	ACA	1.149e^-5	0.671	INTRON RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11176314	3L_11176314_SNP [dm3] 3L_11183214_SNP [dm6]	A	G	1.207e^-5	0.671	INTRON GlcAT-P
2R	9662081	2R_9662081_SNP [dm3] 2R_13774576_SNP [dm6]	T	A	1.284e^-5	0.671	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2121424	2L_2121424_SNP [dm3] 2L_2121424_SNP [dm6]	A	C	1.326e^-5	0.671	INTERGENIC
3L	13445844	3L_13445844_SNP [dm3] 3L_13452744_SNP [dm6]	T	A	1.425e^-5	0.671	INTRON CG10738
2L	9358397	2L_9358397_SNP [dm3] 2L_9358397_SNP [dm6]	G	T	1.453e^-5	0.671	INTERGENIC
X	17621888	X_17621888_SNP [dm3] X_17727855_SNP [dm6]	C	T	1.479e^-5	0.671	INTRON CG42684
2R	12387542	2R_12387542_SNP [dm3] 2R_16500037_SNP [dm6]	T	A	1.523e^-5	0.671	UPSTREAM Sema-2a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17931855	2R_17931855_SNP [dm3] 2R_22044350_SNP [dm6]	T	G	1.613e^-5	0.671	INTERGENIC
3R	25206966	3R_25206966_SNP [dm3] 3R_29381244_SNP [dm6]	G	A	1.788e^-5	0.671	INTRON Ptp99A
3L	13445688	3L_13445688_SNP [dm3] 3L_13452588_SNP [dm6]	G	A	1.869e^-5	0.671	INTRON CG10738
2R	11862522	2R_11862522_SNP [dm3] 2R_15975017_SNP [dm6]	G	C	1.966e^-5	0.671	NON_SYNONYMOUS_CODING Strn-Mlck
3L	11246288	3L_11246288_SNP [dm3] 3L_11253188_SNP [dm6]	G	T	1.986e^-5	0.671	INTRON scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11246290	3L_11246290_SNP [dm3] 3L_11253190_SNP [dm6]	A	G	1.986e^-5	0.671	INTRON scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19474097	3L_19474097_SNP [dm3] 3L_19480997_SNP [dm6]	A	C	2.095e^-5	0.671	INTERGENIC
2L	17761937	2L_17761937_INS [dm3] 2L_17761937_INS [dm6]	C	CC	2.111e^-5	0.671	INTRON CadN	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	11382462	3L_11382462_SNP [dm3] 3L_11389362_SNP [dm6]	G	A	2.134e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1094429	2L_1094429_SNP [dm3] 2L_1094429_SNP [dm6]	G	A	2.183e^-5	0.671	INTRON CG4629
2L	10642876	2L_10642876_SNP [dm3] 2L_10642876_SNP [dm6]	C	A	2.196e^-5	0.671	SYNONYMOUS_CODING CG31872
X	17300896	X_17300896_SNP [dm3] X_17406863_SNP [dm6]	T	A	2.199e^-5	0.671	INTERGENIC
3L	5972566	3L_5972566_SNP [dm3] 3L_5979466_SNP [dm6]	C	A	2.210e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	14580086	2R_14580086_INS [dm3] 2R_18692581_INS [dm6]	G	GCG	2.226e^-5	0.671	UTR_5_PRIME Sik3
2L	11915342	2L_11915342_DEL [dm3] 2L_11915342_DEL [dm6]	CT	G	2.291e^-5	0.671	INTRON Pde1c
X	17343918	X_17343918_SNP [dm3] X_17449885_SNP [dm6]	G	T	2.299e^-5	0.671	NON_SYNONYMOUS_CODING CG8568
2L	6344972	2L_6344972_SNP [dm3] 2L_6344972_SNP [dm6]	A	G	2.346e^-5	0.671	INTRON Cpr	TF binding site mE1_TFBS_sens
2R	19950518	2R_19950518_SNP [dm3] 2R_24062995_SNP [dm6]	T	A	2.371e^-5	0.671	UPSTREAM Rap2l & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2382476	3L_2382476_SNP [dm3] 3L_2382476_SNP [dm6]	G	C	2.384e^-5	0.671	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19999768	3L_19999768_SNP [dm3] 3L_20006668_SNP [dm6]	G	C	2.423e^-5	0.671	INTRON kug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12169326	2R_12169326_SNP [dm3] 2R_16281821_SNP [dm6]	T	C	2.525e^-5	0.671	SYNONYMOUS_CODING CG7755 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16714070	2R_16714070_SNP [dm3] 2R_20826565_SNP [dm6]	C	T	2.532e^-5	0.671	DOWNSTREAM sktl INTRON insc
3R	22784418	3R_22784418_SNP [dm3] 3R_26958696_SNP [dm6]	T	C	2.539e^-5	0.671	UPSTREAM CG6330 INTERGENIC
2L	9448217	2L_9448217_SNP [dm3] 2L_9448217_SNP [dm6]	T	C	2.561e^-5	0.671	INTRON numb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
X	17298011	X_17298011_SNP [dm3] X_17403978_SNP [dm6]	C	A	2.565e^-5	0.671	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	9097796	2R_9097796_SNP [dm3] 2R_13210291_SNP [dm6]	C	T	2.567e^-5	0.671	NON_SYNONYMOUS_CODING CG34312 UTR_3_PRIME FLASH & 2 others DOWNSTREAM FLASH
X	11220541	X_11220541_SNP [dm3] X_11326508_SNP [dm6]	C	G	2.618e^-5	0.671	INTRON CG1657	TF binding site BDTNP1_TFBS_dl
3R	23709648	3R_23709648_SNP [dm3] 3R_27883926_SNP [dm6]	T	C	2.649e^-5	0.671	INTRON CG34353
X	17299456	X_17299456_SNP [dm3] X_17405423_SNP [dm6]	T	G	2.673e^-5	0.671	INTERGENIC
3L	18140859	3L_18140859_SNP [dm3] 3L_18147759_SNP [dm6]	C	T	2.708e^-5	0.671	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	12218175	3L_12218175_SNP [dm3] 3L_12225075_SNP [dm6]	T	G	2.712e^-5	0.671	UPSTREAM app INTRON app	TF binding site mE1_TFBS_inv
2L	2028830	2L_2028830_SNP [dm3] 2L_2028830_SNP [dm6]	C	T	2.736e^-5	0.671	SYNONYMOUS_CODING CG4238	TF binding site mE1_TFBS_cad
2R	13798330	2R_13798330_SNP [dm3] 2R_17910825_SNP [dm6]	C	T	2.752e^-5	0.671	INTRON Elk
X	17295478	X_17295478_SNP [dm3] X_17401445_SNP [dm6]	G	C	2.775e^-5	0.671	INTRON B-H1
3L	14207970	3L_14207970_SNP [dm3] 3L_14214870_SNP [dm6]	A	C	2.851e^-5	0.671	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17299457	X_17299457_SNP [dm3] X_17405424_SNP [dm6]	C	T	2.885e^-5	0.671	INTERGENIC
2L	2487137	2L_2487137_SNP [dm3] 2L_2487137_SNP [dm6]	C	T	2.922e^-5	0.671	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	16249964	2R_16249964_SNP [dm3] 2R_20362459_SNP [dm6]	A	T	2.946e^-5	0.671	INTERGENIC
3L	786632	3L_786632_SNP [dm3] 3L_786632_SNP [dm6]	G	T	3.016e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	20390892	3L_20390892_DEL [dm3] 3L_20397792_DEL [dm6]	GGCCACGG	G	3.018e^-5	0.671	INTRON trbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17311987	X_17311987_SNP [dm3] X_17417954_SNP [dm6]	T	C	3.032e^-5	0.671	INTRON CG8611	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19335009	3L_19335009_INS [dm3] 3L_19341909_INS [dm6]	A	AGTGAACA	3.083e^-5	0.671	UTR_3_PRIME CG32206
3R	26188572	3R_26188572_SNP [dm3] 3R_30362850_SNP [dm6]	C	A	3.111e^-5	0.671	UTR_3_PRIME hdc DOWNSTREAM hdc
3L	5611455	3L_5611455_SNP [dm3] 3L_5618355_SNP [dm6]	T	C	3.114e^-5	0.671	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11382511	3L_11382511_DEL [dm3] 3L_11389411_DEL [dm6]	ACCTTTACTTATAAATATTT...	A	3.120e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17761782	2L_17761782_INS [dm3] 2L_17761782_INS [dm6]	T	TAAACTT	3.123e^-5	0.671	INTRON CadN	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	11382443	3L_11382443_SNP [dm3] 3L_11389343_SNP [dm6]	T	G	3.137e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7088154	3L_7088154_SNP [dm3] 3L_7095054_SNP [dm6]	A	T	3.140e^-5	0.671	START_GAINED form3 UTR_5_PRIME form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	20344658	X_20344658_SNP [dm3] X_20473631_SNP [dm6]	G	T	3.262e^-5	0.671	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6344973	2L_6344973_SNP [dm3] 2L_6344973_SNP [dm6]	C	T	3.295e^-5	0.671	INTRON Cpr	TF binding site mE1_TFBS_sens
X	20344237	X_20344237_SNP [dm3] X_20473210_SNP [dm6]	T	C	3.325e^-5	0.671	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_chinmo
2R	15087026	2R_15087026_SNP [dm3] 2R_19199521_SNP [dm6]	A	T	3.337e^-5	0.671	INTRON hppy
3R	20518400	3R_20518400_SNP [dm3] 3R_24692678_SNP [dm6]	T	G	3.354e^-5	0.671	INTRON slo
X	17300845	X_17300845_SNP [dm3] X_17406812_SNP [dm6]	G	C	3.390e^-5	0.671	INTERGENIC
X	17621849	X_17621849_SNP [dm3] X_17727816_SNP [dm6]	A	G	3.518e^-5	0.671	INTRON CG42684
2L	11055744	2L_11055744_INS [dm3] 2L_11055744_INS [dm6]	T	TT	3.607e^-5	0.671	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17298663	X_17298663_SNP [dm3] X_17404630_SNP [dm6]	C	T	3.609e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
X	17312585	X_17312585_SNP [dm3] X_17418552_SNP [dm6]	T	C	3.620e^-5	0.671	INTRON CG8611
3R	25778335	3R_25778335_SNP [dm3] 3R_29952613_SNP [dm6]	T	C	3.655e^-5	0.671	INTRON TkR99D	TF binding site mE1_TFBS_chinmo
2R	19950483	2R_19950483_SNP [dm3] 2R_24062960_SNP [dm6]	C	T	3.692e^-5	0.671	UPSTREAM Rap2l & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16489289	3L_16489289_SNP [dm3] 3L_16496189_SNP [dm6]	A	G	3.717e^-5	0.671	UTR_5_PRIME CG42514 UPSTREAM CG42514 INTRON CG33158 & 1 other
2R	14580117	2R_14580117_SNP [dm3] 2R_18692612_SNP [dm6]	C	T	3.770e^-5	0.671	UTR_5_PRIME Sik3
3L	4305697	3L_4305697_INS [dm3] 3L_4305697_INS [dm6]	A	AGCTTTATTTTA...	3.815e^-5	0.671	INTRON dyl
2L	11053359	2L_11053359_SNP [dm3] 2L_11053359_SNP [dm6]	T	C	3.889e^-5	0.671	INTRON Samuel
3R	23694730	3R_23694730_SNP [dm3] 3R_27869008_SNP [dm6]	T	C	3.932e^-5	0.671	INTRON CG34353
3L	11382419	3L_11382419_SNP [dm3] 3L_11389319_SNP [dm6]	C	T	3.933e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4232469	2R_4232469_SNP [dm3] 2R_8344964_SNP [dm6]	G	T	3.935e^-5	0.671	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25618611	3R_25618611_SNP [dm3] 3R_29792889_SNP [dm6]	C	T	3.997e^-5	0.671	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_chinmo
2R	16250077	2R_16250077_SNP [dm3] 2R_20362572_SNP [dm6]	C	T	4.054e^-5	0.671	INTERGENIC
3L	5611413	3L_5611413_SNP [dm3] 3L_5618313_SNP [dm6]	C	T	4.071e^-5	0.671	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19961038	2L_19961038_SNP [dm3] 2L_19961038_SNP [dm6]	G	A	4.072e^-5	0.671	UPSTREAM CG34051 DOWNSTREAM CoIV & 2 others INTERGENIC
2L	19961040	2L_19961040_SNP [dm3] 2L_19961040_SNP [dm6]	G	A	4.072e^-5	0.671	UPSTREAM CG34051 DOWNSTREAM CoIV & 2 others INTERGENIC
3L	18140825	3L_18140825_SNP [dm3] 3L_18147725_SNP [dm6]	T	C	4.112e^-5	0.671	INTERGENIC	TF binding site mE1_TFBS_Trl
X	5671615	X_5671615_SNP [dm3] X_5777582_SNP [dm6]	G	A	4.115e^-5	0.671	SYNONYMOUS_CODING CG3108 UPSTREAM CG42264 INTRON CG42699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8738781	3R_8738781_SNP [dm3] 3R_12913059_SNP [dm6]	C	A	4.159e^-5	0.671	INTERGENIC
X	17299474	X_17299474_SNP [dm3] X_17405441_SNP [dm6]	C	G	4.165e^-5	0.671	INTERGENIC
3L	11644265	3L_11644265_SNP [dm3] 3L_11651165_SNP [dm6]	C	T	4.211e^-5	0.671	SYNONYMOUS_CODING CG32085 DOWNSTREAM CG7339
3L	18555689	3L_18555689_SNP [dm3] 3L_18562589_SNP [dm6]	G	C	4.225e^-5	0.671	INTRON AstC-R1
3L	10780746	3L_10780746_SNP [dm3] 3L_10787646_SNP [dm6]	C	T	4.243e^-5	0.671	INTERGENIC
3L	10780933	3L_10780933_SNP [dm3] 3L_10787833_SNP [dm6]	C	T	4.256e^-5	0.671	INTERGENIC
X	17298009	X_17298009_SNP [dm3] X_17403976_SNP [dm6]	A	T	4.261e^-5	0.671	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	11167422	3L_11167422_SNP [dm3] 3L_11174322_SNP [dm6]	A	T	4.317e^-5	0.671	INTRON CG14142
2R	19950431	2R_19950431_SNP [dm3] 2R_24062908_SNP [dm6]	G	C	4.331e^-5	0.671	UPSTREAM Rap2l & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25341540	3R_25341540_SNP [dm3] 3R_29515818_SNP [dm6]	T	A	4.475e^-5	0.678	UTR_5_PRIME CG2014 INTRON CG2014	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	11382464	3L_11382464_SNP [dm3] 3L_11389364_SNP [dm6]	C	T	4.518e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11321539	3L_11321539_SNP [dm3] 3L_11328439_SNP [dm6]	T	A	4.612e^-5	0.678	INTERGENIC
X	17298875	X_17298875_SNP [dm3] X_17404842_SNP [dm6]	C	A	4.616e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25341543	3R_25341543_SNP [dm3] 3R_29515821_SNP [dm6]	C	A	4.654e^-5	0.678	UTR_5_PRIME CG2014 INTRON CG2014	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	19474082	3L_19474082_SNP [dm3] 3L_19480982_SNP [dm6]	A	C	4.709e^-5	0.678	INTERGENIC
3R	24056059	3R_24056059_SNP [dm3] 3R_28230337_SNP [dm6]	A	G	4.710e^-5	0.678	INTRON CG34354
2R	6533010	2R_6533010_INS [dm3] 2R_10645505_INS [dm6]	A	ACGG	4.728e^-5	0.678	UPSTREAM Elp2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	26499323	3R_26499323_SNP [dm3] 3R_30673601_SNP [dm6]	A	G	4.844e^-5	0.678	INTERGENIC
3L	11178592	3L_11178592_SNP [dm3] 3L_11185492_SNP [dm6]	G	T	4.846e^-5	0.678	INTRON GlcAT-P
2R	11689787	2R_11689787_SNP [dm3] 2R_15802282_SNP [dm6]	T	C	4.902e^-5	0.678	INTRON Zasp52 & 1 other
2L	14872050	2L_14872050_SNP [dm3] 2L_14872050_SNP [dm6]	C	T	4.969e^-5	0.678	UPSTREAM CG4480 INTERGENIC
3L	14206579	3L_14206579_SNP [dm3] 3L_14213479_SNP [dm6]	A	G	5.001e^-5	0.678	INTRON nuf
3L	11382430	3L_11382430_SNP [dm3] 3L_11389330_SNP [dm6]	A	T	5.032e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3263272	X_3263272_DEL [dm3] X_3369239_DEL [dm6]	TA	T	5.032e^-5	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
X	7150324	X_7150324_SNP [dm3] X_7256291_SNP [dm6]	C	T	5.033e^-5	0.678	INTRON CR44357	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4369659	3L_4369659_SNP [dm3] 3L_4369659_SNP [dm6]	G	A	5.110e^-5	0.678	SYNONYMOUS_CODING DopEcR
X	11056255	X_11056255_SNP [dm3] X_11162222_SNP [dm6]	G	T	5.117e^-5	0.678	INTRON Dlic
3L	10862630	3L_10862630_SNP [dm3] 3L_10869530_SNP [dm6]	A	T	5.137e^-5	0.678	UPSTREAM tna INTRON tna
3R	8738789	3R_8738789_SNP [dm3] 3R_12913067_SNP [dm6]	C	G	5.158e^-5	0.678	INTERGENIC
3L	18431449	3L_18431449_SNP [dm3] 3L_18438349_SNP [dm6]	T	C	5.179e^-5	0.678	DOWNSTREAM skl INTERGENIC
3L	10780749	3L_10780749_SNP [dm3] 3L_10787649_SNP [dm6]	T	C	5.195e^-5	0.678	INTERGENIC
3L	12199303	3L_12199303_SNP [dm3] 3L_12206203_SNP [dm6]	G	A	5.202e^-5	0.678	UPSTREAM CG5626 DOWNSTREAM app INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	17298094	X_17298094_DEL [dm3] X_17404061_DEL [dm6]	TTGATACATAAAATATTATC...	T	5.353e^-5	0.681	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	16334273	2R_16334273_SNP [dm3] 2R_20446768_SNP [dm6]	T	C	5.356e^-5	0.681	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11382503	3L_11382503_SNP [dm3] 3L_11389403_SNP [dm6]	C	T	5.380e^-5	0.681	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5588504	X_5588504_SNP [dm3] X_5694471_SNP [dm6]	G	C	5.402e^-5	0.681	SYNONYMOUS_CODING CG3149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	11184157	3L_11184157_SNP [dm3] 3L_11191057_SNP [dm6]	A	G	5.467e^-5	0.681	INTRON GlcAT-P
X	17298006	X_17298006_SNP [dm3] X_17403973_SNP [dm6]	A	C	5.480e^-5	0.681	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	12054442	X_12054442_SNP [dm3] X_12160409_SNP [dm6]	A	G	5.494e^-5	0.681	INTRON Ten-a
3L	20390890	3L_20390890_SNP [dm3] 3L_20397790_SNP [dm6]	T	A	5.515e^-5	0.681	INTRON trbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14074308	3L_14074308_SNP [dm3] 3L_14081208_SNP [dm6]	A	C	5.600e^-5	0.687	NON_SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
3L	7043196	3L_7043196_SNP [dm3] 3L_7050096_SNP [dm6]	A	C	5.816e^-5	0.708	INTRON Mp
3L	9238445	3L_9238445_SNP [dm3] 3L_9245345_SNP [dm6]	A	C	5.870e^-5	0.71	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9567304	3R_9567304_SNP [dm3] 3R_13741582_SNP [dm6]	T	C	6.032e^-5	0.716	INTRON CG34383
2R	6533049	2R_6533049_SNP [dm3] 2R_10645544_SNP [dm6]	C	G	6.038e^-5	0.716	UPSTREAM Elp2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	17297896	X_17297896_SNP [dm3] X_17403863_SNP [dm6]	A	C	6.073e^-5	0.716	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17298081	X_17298081_SNP [dm3] X_17404048_SNP [dm6]	G	A	6.079e^-5	0.716	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	11382505	3L_11382505_DEL [dm3] 3L_11389405_DEL [dm6]	CGAA	C	6.193e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9411293	2L_9411293_SNP [dm3] 2L_9411293_SNP [dm6]	C	T	6.226e^-5	0.716	INTRON Shawl
3R	25341511	3R_25341511_SNP [dm3] 3R_29515789_SNP [dm6]	A	T	6.248e^-5	0.716	UPSTREAM CG2014 INTRON CG2014	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	1436339	2L_1436339_SNP [dm3] 2L_1436339_SNP [dm6]	G	A	6.358e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26547396	3R_26547396_DEL [dm3] 3R_30721674_DEL [dm6]	TATT	T	6.409e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11382478	3L_11382478_SNP [dm3] 3L_11389378_SNP [dm6]	T	C	6.409e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11856722	2R_11856722_SNP [dm3] 2R_15969217_SNP [dm6]	C	A	6.416e^-5	0.716	NON_SYNONYMOUS_CODING Strn-Mlck UPSTREAM Strn-Mlck
2R	17111583	2R_17111583_SNP [dm3] 2R_21224078_SNP [dm6]	A	G	6.462e^-5	0.716	UPSTREAM ASPP INTRON ASPP
2L	4438743	2L_4438743_SNP [dm3] 2L_4438743_SNP [dm6]	G	C	6.529e^-5	0.716	DOWNSTREAM CG43056 INTRON CG15431
3L	18311979	3L_18311979_SNP [dm3] 3L_18318879_SNP [dm6]	G	A	6.611e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25492451	3R_25492451_SNP [dm3] 3R_29666729_SNP [dm6]	C	A	6.673e^-5	0.716	SYNONYMOUS_CODING ppk21 DOWNSTREAM ppk20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18365125	3L_18365125_SNP [dm3] 3L_18372025_SNP [dm6]	A	C	6.719e^-5	0.716	INTERGENIC
3R	26493845	3R_26493845_SNP [dm3] 3R_30668123_SNP [dm6]	T	A	6.780e^-5	0.716	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	1421478	3L_1421478_SNP [dm3] 3L_1421478_SNP [dm6]	T	C	6.786e^-5	0.716	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad
3L	3658180	3L_3658180_SNP [dm3] 3L_3658180_SNP [dm6]	G	C	6.844e^-5	0.716	UPSTREAM CG43098 INTERGENIC
2L	19619988	2L_19619988_SNP [dm3] 2L_19619988_SNP [dm6]	T	G	6.875e^-5	0.716	INTRON Lar
3L	19549079	3L_19549079_SNP [dm3] 3L_19555979_SNP [dm6]	A	C	6.911e^-5	0.716	EXON CR44677	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	6472527	2L_6472527_SNP [dm3] 2L_6472527_SNP [dm6]	T	G	6.936e^-5	0.716	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl
3L	20389258	3L_20389258_SNP [dm3] 3L_20396158_SNP [dm6]	C	A	6.939e^-5	0.716	UPSTREAM CR45677 DOWNSTREAM trbl INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12461671	3L_12461671_SNP [dm3] 3L_12468571_SNP [dm6]	T	C	6.966e^-5	0.716	UPSTREAM eyg DOWNSTREAM CG32102 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	7737273	3L_7737273_INS [dm3] 3L_7744173_INS [dm6]	A	AA	6.973e^-5	0.716	INTRON CG32373
2R	16249565	2R_16249565_SNP [dm3] 2R_20362060_SNP [dm6]	G	T	7.017e^-5	0.716	INTERGENIC
2L	13766991	2L_13766991_SNP [dm3] 2L_13766991_SNP [dm6]	G	A	7.029e^-5	0.716	INTRON TM9SF4
3L	11184166	3L_11184166_SNP [dm3] 3L_11191066_SNP [dm6]	A	T	7.044e^-5	0.716	INTRON GlcAT-P
3L	11382446	3L_11382446_SNP [dm3] 3L_11389346_SNP [dm6]	A	G	7.086e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16465334	2R_16465334_SNP [dm3] 2R_20577829_SNP [dm6]	T	A	7.114e^-5	0.716	INTRON qsm
3L	9205909	3L_9205909_INS [dm3] 3L_9212809_INS [dm6]	T	TT	7.221e^-5	0.716	INTRON CG4476
2R	14580123	2R_14580123_SNP [dm3] 2R_18692618_SNP [dm6]	C	T	7.221e^-5	0.716	UTR_5_PRIME Sik3
3L	19956368	3L_19956368_SNP [dm3] 3L_19963268_SNP [dm6]	A	G	7.241e^-5	0.716	INTRON Ac76E
3R	11531101	3R_11531101_SNP [dm3] 3R_15705379_SNP [dm6]	A	C	7.254e^-5	0.716	INTRON CG5404
2L	19471435	2L_19471435_SNP [dm3] 2L_19471435_SNP [dm6]	A	G	7.310e^-5	0.716	UPSTREAM CR45723 EXON CR43839
X	17299174	X_17299174_SNP [dm3] X_17405141_SNP [dm6]	T	A	7.311e^-5	0.716	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17300718	X_17300718_SNP [dm3] X_17406685_SNP [dm6]	T	A	7.332e^-5	0.716	INTERGENIC
3R	23709290	3R_23709290_SNP [dm3] 3R_27883568_SNP [dm6]	C	T	7.409e^-5	0.718	INTRON CG34353
2L	5200053	2L_5200053_SNP [dm3] 2L_5200053_SNP [dm6]	T	C	7.452e^-5	0.718	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26493719	3R_26493719_SNP [dm3] 3R_30667997_SNP [dm6]	C	T	7.489e^-5	0.718	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	15288194	3L_15288194_SNP [dm3] 3L_15295094_SNP [dm6]	T	A	7.521e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14074313	3L_14074313_SNP [dm3] 3L_14081213_SNP [dm6]	T	A	7.614e^-5	0.718	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_sens
3L	22890669	3L_22890669_INS [dm3] 3L_22897569_INS [dm6]	G	ACAAACAGGCTGACGACACA...	7.622e^-5	0.718	DOWNSTREAM CR44688 & 1 other INTERGENIC
2L	2601725	2L_2601725_SNP [dm3] 2L_2601725_SNP [dm6]	G	A	7.623e^-5	0.718	UPSTREAM CR44789 INTERGENIC
2L	2601932	2L_2601932_SNP [dm3] 2L_2601932_SNP [dm6]	C	T	7.698e^-5	0.718	UPSTREAM CR44789 INTERGENIC
2L	1023536	2L_1023536_DEL [dm3] 2L_1023536_DEL [dm6]	ACATAA	T	7.729e^-5	0.718	INTRON IA-2	TF binding site mE1_TFBS_chinmo
3L	2574247	3L_2574247_SNP [dm3] 3L_2574247_SNP [dm6]	T	C	7.844e^-5	0.718	INTRON msn
3L	11612896	3L_11612896_SNP [dm3] 3L_11619796_SNP [dm6]	C	T	7.861e^-5	0.718	NON_SYNONYMOUS_CODING Muc68Ca DOWNSTREAM CG6084
2L	4750797	2L_4750797_SNP [dm3] 2L_4750797_SNP [dm6]	G	A	7.871e^-5	0.718	INTRON CG15630
3L	4568357	3L_4568357_SNP [dm3] 3L_4568357_SNP [dm6]	T	C	7.881e^-5	0.718	INTRON CG42540	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	9537050	2R_9537050_SNP [dm3] 2R_13649545_SNP [dm6]	T	C	7.888e^-5	0.718	INTRON fas
2R	19131587	2R_19131587_SNP [dm3] 2R_23244064_SNP [dm6]	G	A	7.928e^-5	0.718	UTR_3_PRIME yip3
X	17299668	X_17299668_SNP [dm3] X_17405635_SNP [dm6]	A	G	8.087e^-5	0.723	INTERGENIC
X	6409763	X_6409763_SNP [dm3] X_6515730_SNP [dm6]	T	C	8.105e^-5	0.723	INTRON CG42340
2L	18515199	2L_18515199_SNP [dm3] 2L_18515199_SNP [dm6]	A	G	8.157e^-5	0.723	INTERGENIC
3L	11382435	3L_11382435_SNP [dm3] 3L_11389335_SNP [dm6]	T	A	8.188e^-5	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7885588	X_7885588_SNP [dm3] X_7991555_SNP [dm6]	A	T	8.333e^-5	0.723	INTERGENIC
X	17293782	X_17293782_SNP [dm3] X_17399749_SNP [dm6]	C	G	8.418e^-5	0.723	INTRON B-H1
3L	20390812	3L_20390812_SNP [dm3] 3L_20397712_SNP [dm6]	G	A	8.429e^-5	0.723	INTRON trbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9358402	2L_9358402_SNP [dm3] 2L_9358402_SNP [dm6]	G	A	8.488e^-5	0.723	INTERGENIC
2R	11769643	2R_11769643_SNP [dm3] 2R_15882138_SNP [dm6]	T	C	8.543e^-5	0.723	INTRON sli
3L	14214073	3L_14214073_SNP [dm3] 3L_14220973_SNP [dm6]	C	T	8.589e^-5	0.723	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12264377	X_12264377_SNP [dm3] X_12370344_SNP [dm6]	C	T	8.612e^-5	0.723	INTERGENIC
3L	10812707	3L_10812707_SNP [dm3] 3L_10819607_SNP [dm6]	T	C	8.615e^-5	0.723	INTERGENIC
2R	15398088	2R_15398088_SNP [dm3] 2R_19510583_SNP [dm6]	T	G	8.621e^-5	0.723	SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56b
3L	11382449	3L_11382449_SNP [dm3] 3L_11389349_SNP [dm6]	G	T	8.673e^-5	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3264711	3L_3264711_SNP [dm3] 3L_3264711_SNP [dm6]	C	A	8.715e^-5	0.723	INTRON ckd
3L	18140791	3L_18140791_SNP [dm3] 3L_18147691_SNP [dm6]	A	G	8.726e^-5	0.723	INTERGENIC
2R	9233384	2R_9233384_SNP [dm3] 2R_13345879_SNP [dm6]	T	C	8.773e^-5	0.723	INTRON CR44206
3L	918845	3L_918845_SNP [dm3] 3L_918845_SNP [dm6]	C	A	8.820e^-5	0.723	INTRON Glut1
2R	10884714	2R_10884714_SNP [dm3] 2R_14997209_SNP [dm6]	G	A	8.823e^-5	0.723	INTERGENIC	TF binding site mE1_TFBS_inv
2L	16266511	2L_16266511_SNP [dm3] 2L_16266511_SNP [dm6]	G	A	8.843e^-5	0.723	SYNONYMOUS_CODING crp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12054464	X_12054464_SNP [dm3] X_12160431_SNP [dm6]	A	G	8.875e^-5	0.723	INTRON Ten-a
3L	528874	3L_528874_SNP [dm3] 3L_528874_SNP [dm6]	T	C	8.910e^-5	0.723	SYNONYMOUS_CODING CG34269 DOWNSTREAM CR45117 INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5121069	3L_5121069_SNP [dm3] 3L_5127969_SNP [dm6]	A	T	8.933e^-5	0.723	INTERGENIC
3L	12121931	3L_12121931_SNP [dm3] 3L_12128831_SNP [dm6]	C	A	8.936e^-5	0.723	UPSTREAM Lsp2 DOWNSTREAM CG34241 INTERGENIC
3L	7071425	3L_7071425_SNP [dm3] 3L_7078325_SNP [dm6]	T	C	8.944e^-5	0.723	UPSTREAM CG8641 INTERGENIC
2R	10853926	2R_10853926_SNP [dm3] 2R_14966421_SNP [dm6]	A	T	8.989e^-5	0.723	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24200164	3R_24200164_SNP [dm3] 3R_28374442_SNP [dm6]	A	T	9.016e^-5	0.723	INTERGENIC
2R	10865758	2R_10865758_SNP [dm3] 2R_14978253_SNP [dm6]	C	T	9.054e^-5	0.723	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	15323773	3L_15323773_DEL [dm3] 3L_15330673_DEL [dm6]	AA	A	9.208e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19950598	2R_19950598_SNP [dm3] 2R_24063075_SNP [dm6]	G	A	9.210e^-5	0.726	UTR_5_PRIME Rap2l UPSTREAM RpL39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3618467	3L_3618467_SNP [dm3] 3L_3618467_SNP [dm6]	T	A	9.217e^-5	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9448078	2L_9448078_SNP [dm3] 2L_9448078_SNP [dm6]	A	G	9.253e^-5	0.726	INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	1436328	2L_1436328_SNP [dm3] 2L_1436328_SNP [dm6]	G	A	9.409e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12628533	2R_12628533_SNP [dm3] 2R_16741028_SNP [dm6]	C	T	9.421e^-5	0.728	INTERGENIC
3L	11427806	3L_11427806_SNP [dm3] 3L_11434706_SNP [dm6]	A	T	9.518e^-5	0.728	UTR_3_PRIME CG6149 UPSTREAM CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	17300838	X_17300838_SNP [dm3] X_17406805_SNP [dm6]	T	A	9.521e^-5	0.728	INTERGENIC
3R	26937254	3R_26937254_SNP [dm3] 3R_31111532_SNP [dm6]	A	G	9.528e^-5	0.728	INTERGENIC
3L	11182683	3L_11182683_INS [dm3] 3L_11189583_INS [dm6]	A	AAAGTTTATTTAAACTTCA...	9.554e^-5	0.728	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3R	27171655	3R_27171655_SNP [dm3] 3R_31345933_SNP [dm6]	G	A	9.573e^-5	0.728	INTRON CG34347	TF binding site mE1_TFBS_chinmo
2R	9777882	2R_9777882_SNP [dm3] 2R_13890377_SNP [dm6]	A	C	9.634e^-5	0.728	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3263231	X_3263231_DEL [dm3] X_3369198_DEL [dm6]	CTGGGGAGGC	C	9.700e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	12810449	3L_12810449_SNP [dm3] 3L_12817349_SNP [dm6]	A	C	9.708e^-5	0.728	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16025793	2R_16025793_SNP [dm3] 2R_20138288_SNP [dm6]	G	A	9.777e^-5	0.728	DOWNSTREAM CR44635 & 1 other INTERGENIC
3L	7949426	3L_7949426_SNP [dm3] 3L_7956326_SNP [dm6]	T	C	9.821e^-5	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10812710	3L_10812710_SNP [dm3] 3L_10819610_SNP [dm6]	G	A	9.897e^-5	0.728	INTERGENIC
2L	15056992	2L_15056992_SNP [dm3] 2L_15056992_SNP [dm6]	T	C	9.898e^-5	0.728	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
X	9344434	X_9344434_SNP [dm3] X_9450401_SNP [dm6]	G	A	9.902e^-5	0.728	INTRON mgl
3L	3581314	3L_3581314_SNP [dm3] 3L_3581314_SNP [dm6]	C	T	9.932e^-5	0.728	INTRON Eip63E
2R	18594241	2R_18594241_SNP [dm3] 2R_22706736_SNP [dm6]	A	G	9.934e^-5	0.728	UPSTREAM Obp58d & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	21356452	2L_21356452_SNP [dm3] 2L_21356452_SNP [dm6]	C	G	1.007e^-4	0.729	NON_SYNONYMOUS_CODING Tsp39D
3L	10599352	3L_10599352_SNP [dm3] 3L_10606252_SNP [dm6]	T	C	1.009e^-4	0.729	INTERGENIC
X	17298063	X_17298063_SNP [dm3] X_17404030_SNP [dm6]	G	T	1.016e^-4	0.729	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	10842670	2R_10842670_SNP [dm3] 2R_14955165_SNP [dm6]	T	A	1.016e^-4	0.729	INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19950566	2R_19950566_SNP [dm3] 2R_24063043_SNP [dm6]	A	G	1.021e^-4	0.729	UPSTREAM Rap2l & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2481497	2L_2481497_SNP [dm3] 2L_2481497_SNP [dm6]	T	C	1.026e^-4	0.729	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3L	5743565	3L_5743565_SNP [dm3] 3L_5750465_SNP [dm6]	G	T	1.028e^-4	0.729	UTR_3_PRIME DnaJ-1 DOWNSTREAM sif
3L	14249402	3L_14249402_SNP [dm3] 3L_14256302_SNP [dm6]	A	T	1.029e^-4	0.729	INTERGENIC
X	9344313	X_9344313_SNP [dm3] X_9450280_SNP [dm6]	A	G	1.038e^-4	0.729	INTRON mgl
3L	11184126	3L_11184126_SNP [dm3] 3L_11191026_SNP [dm6]	G	A	1.038e^-4	0.729	INTRON GlcAT-P
2L	1932466	2L_1932466_SNP [dm3] 2L_1932466_SNP [dm6]	A	G	1.038e^-4	0.729	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	18200259	3L_18200259_SNP [dm3] 3L_18207159_SNP [dm6]	G	A	1.063e^-4	0.743	INTERGENIC
3L	15660427	3L_15660427_SNP [dm3] 3L_15667327_SNP [dm6]	A	C	1.065e^-4	0.743	INTERGENIC
3L	12810442	3L_12810442_SNP [dm3] 3L_12817342_SNP [dm6]	T	C	1.072e^-4	0.744	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17295483	X_17295483_SNP [dm3] X_17401450_SNP [dm6]	T	A	1.075e^-4	0.744	INTRON B-H1
3L	13150975	3L_13150975_DEL [dm3] 3L_13157875_DEL [dm6]	AA	A	1.088e^-4	0.748	INTERGENIC
3R	24200084	3R_24200084_SNP [dm3] 3R_28374362_SNP [dm6]	C	G	1.088e^-4	0.748	INTERGENIC
3L	14206391	3L_14206391_DEL [dm3] 3L_14213291_DEL [dm6]	AT	A	1.098e^-4	0.752	INTRON nuf	TF binding site mE1_TFBS_bab1
2L	19619992	2L_19619992_SNP [dm3] 2L_19619992_SNP [dm6]	C	T	1.104e^-4	0.753	INTRON Lar
X	17298082	X_17298082_SNP [dm3] X_17404049_SNP [dm6]	A	T	1.117e^-4	0.758	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	14206521	3L_14206521_DEL [dm3] 3L_14213421_DEL [dm6]	GT	G	1.123e^-4	0.758	INTRON nuf
3L	16876745	3L_16876745_SNP [dm3] 3L_16883645_SNP [dm6]	T	A	1.124e^-4	0.758	INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19190918	3R_19190918_SNP [dm3] 3R_23365196_SNP [dm6]	A	T	1.148e^-4	0.758	INTERGENIC
3L	7737268	3L_7737268_SNP [dm3] 3L_7744168_SNP [dm6]	T	A	1.154e^-4	0.758	INTRON CG32373
2R	1353110	2R_1353110_SNP [dm3] 2R_5465605_SNP [dm6]	A	T	1.155e^-4	0.758	INTERGENIC	transposable element FlyBase
3L	1103244	3L_1103244_SNP [dm3] 3L_1103244_SNP [dm6]	G	T	1.160e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17298056	X_17298056_INS [dm3] X_17404023_INS [dm6]	A	ACATA	1.170e^-4	0.758	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	17298157	X_17298157_SNP [dm3] X_17404124_SNP [dm6]	C	T	1.170e^-4	0.758	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	7835750	3L_7835750_SNP [dm3] 3L_7842650_SNP [dm6]	T	C	1.171e^-4	0.758	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10917936	3L_10917936_SNP [dm3] 3L_10924836_SNP [dm6]	T	G	1.173e^-4	0.758	INTERGENIC
X	18866938	X_18866938_SNP [dm3] X_18972905_SNP [dm6]	T	A	1.179e^-4	0.758	INTRON CG43759
3L	7737286	3L_7737286_SNP [dm3] 3L_7744186_SNP [dm6]	G	A	1.183e^-4	0.758	INTRON CG32373
2L	16292927	2L_16292927_SNP [dm3] 2L_16292927_SNP [dm6]	C	G	1.187e^-4	0.758	DOWNSTREAM CG17329 & 1 other INTRON CG13258	TF binding site mE1_TFBS_inv
2R	10870590	2R_10870590_SNP [dm3] 2R_14983085_SNP [dm6]	C	T	1.192e^-4	0.758	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19463531	3L_19463531_DEL [dm3] 3L_19470431_DEL [dm6]	ACAGA	A	1.195e^-4	0.758	INTERGENIC	transposable element FlyBase
3L	14205956	3L_14205956_SNP [dm3] 3L_14212856_SNP [dm6]	G	T	1.198e^-4	0.758	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	2020060	3L_2020060_DEL [dm3] 3L_2020060_DEL [dm6]	GAAG	G	1.198e^-4	0.758	DOWNSTREAM CG42357 INTERGENIC
2L	9452747	2L_9452747_SNP [dm3] 2L_9452747_SNP [dm6]	C	G	1.206e^-4	0.758	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10850686	2R_10850686_DEL [dm3] 2R_14963181_DEL [dm6]	CAC	C	1.206e^-4	0.758	UPSTREAM ckn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10839336	2R_10839336_SNP [dm3] 2R_14951831_SNP [dm6]	C	T	1.215e^-4	0.758	SYNONYMOUS_CODING aPKC UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11175590	3L_11175590_SNP [dm3] 3L_11182490_SNP [dm6]	T	A	1.216e^-4	0.758	NON_SYNONYMOUS_CODING GlcAT-P INTRON GlcAT-P
3L	16876741	3L_16876741_SNP [dm3] 3L_16883641_SNP [dm6]	T	C	1.224e^-4	0.758	INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23709227	3R_23709227_SNP [dm3] 3R_27883505_SNP [dm6]	A	G	1.228e^-4	0.758	INTRON CG34353
3L	17917296	3L_17917296_SNP [dm3] 3L_17924196_SNP [dm6]	A	G	1.229e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26937316	3R_26937316_SNP [dm3] 3R_31111594_SNP [dm6]	C	T	1.232e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_inv
X	20958746	X_20958746_SNP [dm3] X_21087719_SNP [dm6]	G	C	1.237e^-4	0.758	INTERGENIC
2R	14221349	2R_14221349_SNP [dm3] 2R_18333844_SNP [dm6]	G	C	1.237e^-4	0.758	INTRON sbb	TF binding site BDTNP1_TFBS_dl
X	19311145	X_19311145_SNP [dm3] X_19417112_SNP [dm6]	A	G	1.240e^-4	0.758	INTRON kek5
3R	5152337	3R_5152337_SNP [dm3] 3R_9326615_SNP [dm6]	T	C	1.242e^-4	0.758	INTRON CG8861
2L	2026154	2L_2026154_SNP [dm3] 2L_2026154_SNP [dm6]	A	T	1.242e^-4	0.758	INTRON CG4238
2R	14317067	2R_14317067_SNP [dm3] 2R_18429562_SNP [dm6]	C	A	1.246e^-4	0.758	DOWNSTREAM CG30118 INTRON CG12263	TF binding site mE1_TFBS_cad
2L	13340884	2L_13340884_DEL [dm3] 2L_13340884_DEL [dm6]	ATGGT	C	1.253e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	19471446	2L_19471446_SNP [dm3] 2L_19471446_SNP [dm6]	C	T	1.254e^-4	0.758	UPSTREAM CR45723 EXON CR43839
3L	18140658	3L_18140658_SNP [dm3] 3L_18147558_SNP [dm6]	C	T	1.261e^-4	0.758	INTERGENIC
3L	18167165	3L_18167165_SNP [dm3] 3L_18174065_SNP [dm6]	C	T	1.262e^-4	0.758	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17621938	X_17621938_SNP [dm3] X_17727905_SNP [dm6]	T	C	1.263e^-4	0.758	INTRON CG42684
2R	19962639	2R_19962639_SNP [dm3] 2R_24075116_SNP [dm6]	G	A	1.264e^-4	0.758	UPSTREAM Mlp60A INTRON Mlp60A
3R	26234059	3R_26234059_SNP [dm3] 3R_30408337_SNP [dm6]	C	T	1.273e^-4	0.759	INTERGENIC
2R	11603522	2R_11603522_SNP [dm3] 2R_15716017_SNP [dm6]	A	T	1.279e^-4	0.759	INTERGENIC
X	22281141	X_22281141_SNP [dm3] X_22879305_SNP [dm6]	T	A	1.300e^-4	0.759	SYNONYMOUS_CODING CG42346
2L	14228604	2L_14228604_DEL [dm3] 2L_14228604_DEL [dm6]	GAGAG	G	1.304e^-4	0.759	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17477422	X_17477422_SNP [dm3] X_17583389_SNP [dm6]	T	C	1.305e^-4	0.759	INTRON CG12991
2L	2376743	2L_2376743_SNP [dm3] 2L_2376743_SNP [dm6]	A	T	1.307e^-4	0.759	INTRON Atxn7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	4488749	3L_4488749_SNP [dm3] 3L_4488749_SNP [dm6]	T	C	1.310e^-4	0.759	INTRON CG13722
2R	14229891	2R_14229891_SNP [dm3] 2R_18342386_SNP [dm6]	G	A	1.311e^-4	0.759	INTRON sbb
2R	16775857	2R_16775857_SNP [dm3] 2R_20888352_SNP [dm6]	A	C	1.313e^-4	0.759	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	7613329	3L_7613329_SNP [dm3] 3L_7620229_SNP [dm6]	T	A	1.319e^-4	0.759	INTRON CG33275
X	17506058	X_17506058_SNP [dm3] X_17612025_SNP [dm6]	C	T	1.329e^-4	0.759	INTERGENIC
2L	14635546	2L_14635546_SNP [dm3] 2L_14635546_SNP [dm6]	G	T	1.335e^-4	0.759	INTRON osp
3L	10881895	3L_10881895_SNP [dm3] 3L_10888795_SNP [dm6]	T	A	1.338e^-4	0.759	INTERGENIC
2L	9323273	2L_9323273_SNP [dm3] 2L_9323273_SNP [dm6]	G	A	1.351e^-4	0.759	INTERGENIC
3L	3075378	3L_3075378_DEL [dm3] 3L_3075378_DEL [dm6]	AAATTAAAGCAAAG...	TC	1.355e^-4	0.759	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7148473	X_7148473_SNP [dm3] X_7254440_SNP [dm6]	C	T	1.356e^-4	0.759	INTRON CR44357
2L	17761102	2L_17761102_SNP [dm3] 2L_17761102_SNP [dm6]	G	A	1.360e^-4	0.759	INTRON CadN
3L	11028178	3L_11028178_SNP [dm3] 3L_11035078_SNP [dm6]	C	T	1.361e^-4	0.759	EXON CR44547	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3596801	3L_3596801_SNP [dm3] 3L_3596801_SNP [dm6]	T	A	1.377e^-4	0.759	INTRON Eip63E
X	17312293	X_17312293_SNP [dm3] X_17418260_SNP [dm6]	C	A	1.379e^-4	0.759	INTRON CG8611	TF binding site BDTNP1_TFBS_dl
X	17293670	X_17293670_SNP [dm3] X_17399637_SNP [dm6]	C	A	1.379e^-4	0.759	INTRON B-H1
3L	10793839	3L_10793839_SNP [dm3] 3L_10800739_SNP [dm6]	G	T	1.380e^-4	0.759	UPSTREAM CG12523 INTERGENIC
2L	2601953	2L_2601953_SNP [dm3] 2L_2601953_SNP [dm6]	G	A	1.383e^-4	0.759	UPSTREAM CR44789 INTERGENIC
2R	14643788	2R_14643788_SNP [dm3] 2R_18756283_SNP [dm6]	T	A	1.389e^-4	0.759	NON_SYNONYMOUS_CODING Cyp12b2 DOWNSTREAM Jabba
2L	1678972	2L_1678972_SNP [dm3] 2L_1678972_SNP [dm6]	G	C	1.389e^-4	0.759	INTRON chinmo
3L	14206365	3L_14206365_DEL [dm3] 3L_14213265_DEL [dm6]	AC	A	1.391e^-4	0.759	INTRON nuf	TF binding site mE1_TFBS_bab1
3R	20241646	3R_20241646_SNP [dm3] 3R_24415924_SNP [dm6]	T	C	1.403e^-4	0.759	INTRON nAChRalpha1
3L	11185452	3L_11185452_SNP [dm3] 3L_11192352_SNP [dm6]	A	C	1.408e^-4	0.759	INTRON GlcAT-P
X	17299179	X_17299179_SNP [dm3] X_17405146_SNP [dm6]	G	A	1.411e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10642819	2L_10642819_SNP [dm3] 2L_10642819_SNP [dm6]	C	T	1.420e^-4	0.759	SYNONYMOUS_CODING CG31872
3L	3596453	3L_3596453_SNP [dm3] 3L_3596453_SNP [dm6]	T	C	1.423e^-4	0.759	INTRON Eip63E	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25243696	3R_25243696_SNP [dm3] 3R_29417974_SNP [dm6]	T	C	1.423e^-4	0.759	INTRON Ptp99A
X	17312319	X_17312319_SNP [dm3] X_17418286_SNP [dm6]	C	T	1.424e^-4	0.759	INTRON CG8611	TF binding site BDTNP1_TFBS_dl
2R	10858596	2R_10858596_SNP [dm3] 2R_14971091_SNP [dm6]	T	C	1.434e^-4	0.759	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15323781	3L_15323781_DEL [dm3] 3L_15330681_DEL [dm6]	CC	C	1.440e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5062088	2L_5062088_SNP [dm3] 2L_5062088_SNP [dm6]	C	T	1.447e^-4	0.759	UPSTREAM qtc DOWNSTREAM CR43820 INTRON qtc
2L	16214541	2L_16214541_DEL [dm3] 2L_16214541_DEL [dm6]	AGCTCCA	A	1.455e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9358433	2L_9358433_SNP [dm3] 2L_9358433_SNP [dm6]	T	A	1.457e^-4	0.759	INTERGENIC
3R	22591303	3R_22591303_SNP [dm3] 3R_26765581_SNP [dm6]	C	T	1.465e^-4	0.759	INTERGENIC
2R	14643793	2R_14643793_SNP [dm3] 2R_18756288_SNP [dm6]	G	T	1.465e^-4	0.759	NON_SYNONYMOUS_CODING Cyp12b2 DOWNSTREAM Jabba
2R	13794646	2R_13794646_SNP [dm3] 2R_17907141_SNP [dm6]	G	A	1.466e^-4	0.759	INTRON Elk
2L	19837808	2L_19837808_SNP [dm3] 2L_19837808_SNP [dm6]	G	A	1.469e^-4	0.759	INTRON sick
3L	12810446	3L_12810446_SNP [dm3] 3L_12817346_SNP [dm6]	A	C	1.474e^-4	0.759	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10917281	3L_10917281_SNP [dm3] 3L_10924181_SNP [dm6]	G	T	1.478e^-4	0.759	INTERGENIC
2R	12169347	2R_12169347_SNP [dm3] 2R_16281842_SNP [dm6]	C	T	1.486e^-4	0.759	SYNONYMOUS_CODING CG7755 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17312327	X_17312327_SNP [dm3] X_17418294_SNP [dm6]	C	A	1.494e^-4	0.759	INTRON CG8611	TF binding site BDTNP1_TFBS_dl
2R	16950099	2R_16950099_SNP [dm3] 2R_21062594_SNP [dm6]	A	C	1.499e^-4	0.759	SYNONYMOUS_CODING Cht8 DOWNSTREAM Cht12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2502652	X_2502652_SNP [dm3] X_2608619_SNP [dm6]	T	A	1.500e^-4	0.759	NON_SYNONYMOUS_CODING Bzd DOWNSTREAM CG8636	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	11389786	3L_11389786_SNP [dm3] 3L_11396686_SNP [dm6]	A	T	1.508e^-4	0.759	UPSTREAM CG44362 INTERGENIC
3R	8095688	3R_8095688_SNP [dm3] 3R_12269966_SNP [dm6]	G	A	1.510e^-4	0.759	UPSTREAM CG17738 INTRON svp EXON CR44039	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6799206	2R_6799206_SNP [dm3] 2R_10911701_SNP [dm6]	C	T	1.511e^-4	0.759	INTERGENIC
3R	13016420	3R_13016420_SNP [dm3] 3R_17190698_SNP [dm6]	C	T	1.511e^-4	0.759	INTRON Mur89F
3L	3838788	3L_3838788_SNP [dm3] 3L_3838788_SNP [dm6]	T	C	1.514e^-4	0.759	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26494059	3R_26494059_SNP [dm3] 3R_30668337_SNP [dm6]	G	A	1.521e^-4	0.759	INTERGENIC
3R	26937258	3R_26937258_INS [dm3] 3R_31111536_INS [dm6]	T	TT	1.528e^-4	0.759	INTERGENIC
3R	23676007	3R_23676007_SNP [dm3] 3R_27850285_SNP [dm6]	T	C	1.528e^-4	0.759	INTRON CG34353
2L	9417134	2L_9417134_SNP [dm3] 2L_9417134_SNP [dm6]	G	A	1.529e^-4	0.759	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2758753	3L_2758753_SNP [dm3] 3L_2758753_SNP [dm6]	A	G	1.530e^-4	0.759	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16919669	3L_16919669_SNP [dm3] 3L_16926569_SNP [dm6]	C	G	1.531e^-4	0.759	INTRON CG13023
3L	14204587	3L_14204587_DEL [dm3] 3L_14211487_DEL [dm6]	GTATCCCTACTGAATATTTA...	G	1.536e^-4	0.759	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10181176	3L_10181176_SNP [dm3] 3L_10188076_SNP [dm6]	C	T	1.536e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17761838	2L_17761838_SNP [dm3] 2L_17761838_SNP [dm6]	A	C	1.536e^-4	0.759	INTRON CadN	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	14509435	X_14509435_SNP [dm3] X_14615402_SNP [dm6]	T	C	1.543e^-4	0.759	INTRON NetA
X	17312498	X_17312498_SNP [dm3] X_17418465_SNP [dm6]	T	C	1.553e^-4	0.759	INTRON CG8611
2R	10845862	2R_10845862_SNP [dm3] 2R_14958357_SNP [dm6]	T	C	1.561e^-4	0.759	START_GAINED aPKC UTR_5_PRIME aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl
2L	17761855	2L_17761855_SNP [dm3] 2L_17761855_SNP [dm6]	G	C	1.562e^-4	0.759	INTRON CadN	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	10858094	2R_10858094_SNP [dm3] 2R_14970589_SNP [dm6]	G	T	1.563e^-4	0.759	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13798083	2R_13798083_SNP [dm3] 2R_17910578_SNP [dm6]	A	T	1.567e^-4	0.759	INTRON Elk
2R	16663635	2R_16663635_SNP [dm3] 2R_20776130_SNP [dm6]	C	A	1.575e^-4	0.759	SYNONYMOUS_CODING CG43709 DOWNSTREAM CG13443 & 1 other
2R	13798061	2R_13798061_SNP [dm3] 2R_17910556_SNP [dm6]	A	T	1.578e^-4	0.759	INTRON Elk
2R	13798072	2R_13798072_INS [dm3] 2R_17910567_INS [dm6]	T	TTACTTAAAT	1.578e^-4	0.759	INTRON Elk
3L	19550097	3L_19550097_SNP [dm3] 3L_19556997_SNP [dm6]	C	G	1.590e^-4	0.759	EXON CR44677	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	8738777	3R_8738777_SNP [dm3] 3R_12913055_SNP [dm6]	A	T	1.595e^-4	0.759	INTERGENIC
3L	13445674	3L_13445674_SNP [dm3] 3L_13452574_SNP [dm6]	C	A	1.603e^-4	0.759	INTRON CG10738
X	12378475	X_12378475_SNP [dm3] X_12484442_SNP [dm6]	G	T	1.607e^-4	0.759	INTERGENIC
2R	10463649	2R_10463649_SNP [dm3] 2R_14576144_SNP [dm6]	C	A	1.608e^-4	0.759	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10392630	3R_10392630_SNP [dm3] 3R_14566908_SNP [dm6]	T	G	1.615e^-4	0.759	NON_SYNONYMOUS_CODING CG31313 UTR_3_PRIME CG31313 DOWNSTREAM CG14852 & 1 other	TF binding site mE1_TFBS_cad
3R	23488269	3R_23488269_SNP [dm3] 3R_27662547_SNP [dm6]	A	T	1.622e^-4	0.759	INTRON unc80
2L	19474171	2L_19474171_SNP [dm3] 2L_19474171_SNP [dm6]	A	T	1.625e^-4	0.759	INTERGENIC
2L	15064650	2L_15064650_SNP [dm3] 2L_15064650_SNP [dm6]	C	A	1.630e^-4	0.759	NON_SYNONYMOUS_CODING vig INTRON vas
X	9344404	X_9344404_SNP [dm3] X_9450371_SNP [dm6]	C	T	1.634e^-4	0.759	INTRON mgl
3R	23676008	3R_23676008_DEL [dm3] 3R_27850286_DEL [dm6]	TTTTTCATAA	T	1.636e^-4	0.759	INTRON CG34353
2R	17260022	2R_17260022_SNP [dm3] 2R_21372517_SNP [dm6]	T	C	1.637e^-4	0.759	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9448041	2L_9448041_SNP [dm3] 2L_9448041_SNP [dm6]	T	C	1.637e^-4	0.759	INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	12944395	3L_12944395_SNP [dm3] 3L_12951295_SNP [dm6]	C	T	1.642e^-4	0.759	INTERGENIC
2L	9358383	2L_9358383_SNP [dm3] 2L_9358383_SNP [dm6]	T	C	1.645e^-4	0.759	INTERGENIC
3L	18307083	3L_18307083_SNP [dm3] 3L_18313983_SNP [dm6]	T	C	1.645e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_sens
3L	11382447	3L_11382447_SNP [dm3] 3L_11389347_SNP [dm6]	T	G	1.646e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17295484	X_17295484_SNP [dm3] X_17401451_SNP [dm6]	C	A	1.647e^-4	0.759	INTRON B-H1
2L	13459759	2L_13459759_SNP [dm3] 2L_13459759_SNP [dm6]	A	T	1.649e^-4	0.759	UTR_5_PRIME CG42810 INTRON CG42784
X	3263245	X_3263245_SNP [dm3] X_3369212_SNP [dm6]	T	A	1.655e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3R	23676003	3R_23676003_SNP [dm3] 3R_27850281_SNP [dm6]	T	C	1.664e^-4	0.759	INTRON CG34353
2L	1101273	2L_1101273_SNP [dm3] 2L_1101273_SNP [dm6]	G	T	1.687e^-4	0.759	INTRON CG4629
2L	7069059	2L_7069059_SNP [dm3] 2L_7069059_SNP [dm6]	G	A	1.689e^-4	0.759	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
3L	4512622	3L_4512622_SNP [dm3] 3L_4512622_SNP [dm6]	T	G	1.693e^-4	0.759	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	15358057	X_15358057_SNP [dm3] X_15464024_SNP [dm6]	A	G	1.695e^-4	0.759	SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299 UPSTREAM CG6299	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21901181	3R_21901181_SNP [dm3] 3R_26075459_SNP [dm6]	G	A	1.697e^-4	0.759	INTERGENIC
3L	18605691	3L_18605691_SNP [dm3] 3L_18612591_SNP [dm6]	T	C	1.698e^-4	0.759	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
2R	16972820	2R_16972820_SNP [dm3] 2R_21085315_SNP [dm6]	C	T	1.705e^-4	0.759	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad
3L	19295704	3L_19295704_SNP [dm3] 3L_19302604_SNP [dm6]	A	G	1.705e^-4	0.759	UTR_3_PRIME pip INTRON pip	TF binding site mE1_TFBS_sens
3L	16770134	3L_16770134_SNP [dm3] 3L_16777034_SNP [dm6]	A	C	1.707e^-4	0.759	UTR_3_PRIME Nrt & 1 other DOWNSTREAM CG13025 & 1 other
2L	7697666	2L_7697666_DEL [dm3] 2L_7697666_DEL [dm6]	TAAAGTTTTTAA...	CCT	1.720e^-4	0.759	INTRON Tep2
3L	787543	3L_787543_SNP [dm3] 3L_787543_SNP [dm6]	C	A	1.721e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2601679	2L_2601679_SNP [dm3] 2L_2601679_SNP [dm6]	T	G	1.722e^-4	0.759	EXON CR44789
3R	25872042	3R_25872042_SNP [dm3] 3R_30046320_SNP [dm6]	C	A	1.724e^-4	0.759	UPSTREAM CG7943 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4572380	3L_4572380_SNP [dm3] 3L_4572380_SNP [dm6]	A	C	1.726e^-4	0.759	INTRON CG42540	TF binding site mE1_TFBS_cad
2R	5216830	2R_5216830_SNP [dm3] 2R_9329325_SNP [dm6]	C	T	1.731e^-4	0.759	INTRON CG13954 & 1 other
X	17312517	X_17312517_SNP [dm3] X_17418484_SNP [dm6]	T	G	1.733e^-4	0.759	INTRON CG8611
2L	9448067	2L_9448067_SNP [dm3] 2L_9448067_SNP [dm6]	A	T	1.735e^-4	0.759	INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	17783127	2L_17783127_SNP [dm3] 2L_17783127_SNP [dm6]	T	C	1.745e^-4	0.759	INTERGENIC
X	17298064	X_17298064_SNP [dm3] X_17404031_SNP [dm6]	A	T	1.750e^-4	0.759	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	11028177	3L_11028177_SNP [dm3] 3L_11035077_SNP [dm6]	A	T	1.752e^-4	0.759	EXON CR44547	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10881805	3L_10881805_SNP [dm3] 3L_10888705_SNP [dm6]	C	G	1.759e^-4	0.759	INTERGENIC
2R	13003349	2R_13003349_SNP [dm3] 2R_17115844_SNP [dm6]	C	G	1.760e^-4	0.759	INTERGENIC
3L	9205897	3L_9205897_SNP [dm3] 3L_9212797_SNP [dm6]	T	C	1.761e^-4	0.759	INTRON CG4476
3R	18160169	3R_18160169_SNP [dm3] 3R_22334447_SNP [dm6]	C	T	1.764e^-4	0.759	UTR_3_PRIME CG5388 UPSTREAM CG5391
X	12942104	X_12942104_SNP [dm3] X_13048071_SNP [dm6]	C	T	1.769e^-4	0.759	INTRON rad
2R	1389712	2R_1389712_SNP [dm3] 2R_5502207_SNP [dm6]	G	A	1.769e^-4	0.759	INTRON CG30438	transposable element FlyBase
X	6424657	X_6424657_SNP [dm3] X_6530624_SNP [dm6]	T	C	1.771e^-4	0.759	SYNONYMOUS_CODING Spat DOWNSTREAM RpL7A	TF binding site mE1_TFBS_cad
3L	18381892	3L_18381892_SNP [dm3] 3L_18388792_SNP [dm6]	A	T	1.777e^-4	0.759	INTERGENIC
2L	20038844	2L_20038844_SNP [dm3] 2L_20038844_SNP [dm6]	C	A	1.778e^-4	0.759	INTRON sNPF
3R	12671418	3R_12671418_SNP [dm3] 3R_16845696_SNP [dm6]	C	G	1.795e^-4	0.759	INTRON iab-8	TF binding site mE1_TFBS_cad
X	20756178	X_20756178_SNP [dm3] X_20885151_SNP [dm6]	G	T	1.795e^-4	0.759	INTRON shakB
3R	23955902	3R_23955902_SNP [dm3] 3R_28130180_SNP [dm6]	G	A	1.799e^-4	0.759	INTERGENIC
X	20259124	X_20259124_SNP [dm3] X_20388097_SNP [dm6]	G	T	1.800e^-4	0.759	INTERGENIC
3R	3031717	3R_3031717_SNP [dm3] 3R_7205995_SNP [dm6]	C	T	1.802e^-4	0.759	INTERGENIC
X	12264379	X_12264379_SNP [dm3] X_12370346_SNP [dm6]	A	T	1.821e^-4	0.759	INTERGENIC
3L	19463494	3L_19463494_INS [dm3] 3L_19470394_INS [dm6]	A	AA	1.821e^-4	0.759	INTERGENIC	transposable element FlyBase
2R	10463617	2R_10463617_SNP [dm3] 2R_14576112_SNP [dm6]	T	C	1.825e^-4	0.759	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13150471	3L_13150471_SNP [dm3] 3L_13157371_SNP [dm6]	A	C	1.828e^-4	0.759	INTERGENIC
2L	4750783	2L_4750783_SNP [dm3] 2L_4750783_SNP [dm6]	T	G	1.831e^-4	0.759	INTRON CG15630
2L	10048964	2L_10048964_SNP [dm3] 2L_10048964_SNP [dm6]	C	G	1.832e^-4	0.759	UPSTREAM CG33301 INTERGENIC
3L	18420038	3L_18420038_SNP [dm3] 3L_18426938_SNP [dm6]	T	G	1.838e^-4	0.759	INTERGENIC
3R	23488270	3R_23488270_SNP [dm3] 3R_27662548_SNP [dm6]	A	G	1.840e^-4	0.759	INTRON unc80
3R	19129603	3R_19129603_SNP [dm3] 3R_23303881_SNP [dm6]	A	C	1.843e^-4	0.759	INTRON pnt	TF binding site BDTNP1_TFBS_dl
3L	18420029	3L_18420029_SNP [dm3] 3L_18426929_SNP [dm6]	A	T	1.846e^-4	0.759	INTERGENIC
X	3263299	X_3263299_SNP [dm3] X_3369266_SNP [dm6]	A	G	1.848e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	18399849	3L_18399849_SNP [dm3] 3L_18406749_SNP [dm6]	G	T	1.849e^-4	0.759	INTERGENIC	regulatory region REDfly_CRMs
3L	11389797	3L_11389797_SNP [dm3] 3L_11396697_SNP [dm6]	T	A	1.850e^-4	0.759	UPSTREAM CG44362 INTERGENIC
3L	11165222	3L_11165222_SNP [dm3] 3L_11172122_SNP [dm6]	C	G	1.851e^-4	0.759	UTR_3_PRIME CG7616	TF binding site mE1_TFBS_cad
3L	11416242	3L_11416242_SNP [dm3] 3L_11423142_SNP [dm6]	T	C	1.851e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_D
2R	14906541	2R_14906541_SNP [dm3] 2R_19019036_SNP [dm6]	T	A	1.851e^-4	0.759	INTERGENIC
X	17312349	X_17312349_SNP [dm3] X_17418316_SNP [dm6]	T	C	1.852e^-4	0.759	INTRON CG8611
2R	18594011	2R_18594011_SNP [dm3] 2R_22706506_SNP [dm6]	G	A	1.858e^-4	0.759	SYNONYMOUS_CODING Obp58c UPSTREAM Obp58d DOWNSTREAM Obp58b	TF binding site mE1_TFBS_inv
2R	18573101	2R_18573101_SNP [dm3] 2R_22685596_SNP [dm6]	G	A	1.862e^-4	0.759	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	15004728	3L_15004728_SNP [dm3] 3L_15011628_SNP [dm6]	T	C	1.873e^-4	0.759	UTR_5_PRIME Reck	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19954851	2R_19954851_SNP [dm3] 2R_24067328_SNP [dm6]	A	G	1.874e^-4	0.759	INTRON yki
X	17131542	X_17131542_SNP [dm3] X_17237509_SNP [dm6]	A	T	1.888e^-4	0.759	INTRON f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13631454	2L_13631454_SNP [dm3] 2L_13631454_SNP [dm6]	T	A	1.889e^-4	0.759	INTRON kuz
3R	25807964	3R_25807964_SNP [dm3] 3R_29982242_SNP [dm6]	C	A	1.893e^-4	0.759	INTERGENIC
3L	19549065	3L_19549065_DEL [dm3] 3L_19555965_DEL [dm6]	TA	T	1.899e^-4	0.759	EXON CR44677	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	3419283	2L_3419283_SNP [dm3] 2L_3419283_SNP [dm6]	T	A	1.904e^-4	0.759	INTRON pgant2
2R	9086138	2R_9086138_SNP [dm3] 2R_13198633_SNP [dm6]	T	A	1.905e^-4	0.759	UPSTREAM Aats-val & 1 other INTERGENIC
3L	12810435	3L_12810435_SNP [dm3] 3L_12817335_SNP [dm6]	G	A	1.906e^-4	0.759	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23488288	3R_23488288_INS [dm3] 3R_27662566_INS [dm6]	A	AA	1.921e^-4	0.759	INTRON unc80
2R	10823833	2R_10823833_SNP [dm3] 2R_14936328_SNP [dm6]	C	A	1.922e^-4	0.759	INTRON Lap1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24827034	3R_24827034_SNP [dm3] 3R_29001312_SNP [dm6]	C	A	1.923e^-4	0.759	INTRON wat
2L	2487669	2L_2487669_SNP [dm3] 2L_2487669_SNP [dm6]	A	T	1.927e^-4	0.759	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	3149561	3R_3149561_SNP [dm3] 3R_7323839_SNP [dm6]	G	T	1.928e^-4	0.759	INTERGENIC
2L	3776065	2L_3776065_SNP [dm3] 2L_3776065_SNP [dm6]	A	G	1.928e^-4	0.759	INTRON bowl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	17424234	X_17424234_SNP [dm3] X_17530201_SNP [dm6]	A	C	1.929e^-4	0.759	INTRON CG43658
2L	2806636	2L_2806636_SNP [dm3] 2L_2806636_SNP [dm6]	C	A	1.935e^-4	0.759	INTRON daw
3L	18140709	3L_18140709_SNP [dm3] 3L_18147609_SNP [dm6]	T	G	1.939e^-4	0.759	INTERGENIC
3R	25618492	3R_25618492_SNP [dm3] 3R_29792770_SNP [dm6]	C	T	1.944e^-4	0.759	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_chinmo
3R	10974007	3R_10974007_INS [dm3] 3R_15148285_INS [dm6]	C	CATTC	1.944e^-4	0.759	UPSTREAM GlyS INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11575813	3L_11575813_SNP [dm3] 3L_11582713_SNP [dm6]	G	C	1.954e^-4	0.759	NON_SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
3R	24054650	3R_24054650_SNP [dm3] 3R_28228928_SNP [dm6]	C	G	1.955e^-4	0.759	INTRON CG34354
2R	16278098	2R_16278098_SNP [dm3] 2R_20390593_SNP [dm6]	C	A	1.958e^-4	0.759	INTERGENIC
3L	11382490	3L_11382490_SNP [dm3] 3L_11389390_SNP [dm6]	A	T	1.960e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5274123	3L_5274123_SNP [dm3] 3L_5281023_SNP [dm6]	A	T	1.963e^-4	0.759	INTERGENIC
3L	11174159	3L_11174159_SNP [dm3] 3L_11181059_SNP [dm6]	G	T	1.963e^-4	0.759	INTRON GlcAT-P
2L	9411012	2L_9411012_SNP [dm3] 2L_9411012_SNP [dm6]	A	T	1.965e^-4	0.759	INTRON Shawl
2L	21292154	2L_21292154_SNP [dm3] 2L_21292154_SNP [dm6]	T	C	1.974e^-4	0.759	NON_SYNONYMOUS_CODING Gr39a INTRON Mio & 1 other	TF binding site mE1_TFBS_HSA
2L	21305620	2L_21305620_INS [dm3] 2L_21305620_INS [dm6]	T	TTAA	1.978e^-4	0.759	INTRON Mio
2L	2267222	2L_2267222_DEL [dm3] 2L_2267222_DEL [dm6]	GGAGGCTGTGGGG...	AA	1.989e^-4	0.759	DOWNSTREAM CG17242 INTERGENIC
2L	4459281	2L_4459281_SNP [dm3] 2L_4459281_SNP [dm6]	A	G	1.992e^-4	0.759	SYNONYMOUS_CODING mRpL27 UPSTREAM RpL27A & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	5274148	3L_5274148_SNP [dm3] 3L_5281048_SNP [dm6]	C	T	1.992e^-4	0.759	INTERGENIC
3L	3855132	3L_3855132_SNP [dm3] 3L_3855132_SNP [dm6]	G	T	1.993e^-4	0.759	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	13804701	2R_13804701_SNP [dm3] 2R_17917196_SNP [dm6]	G	A	1.999e^-4	0.759	INTRON Elk
2R	16088613	2R_16088613_SNP [dm3] 2R_20201108_SNP [dm6]	G	A	2.003e^-4	0.759	INTERGENIC
2R	16492368	2R_16492368_SNP [dm3] 2R_20604863_SNP [dm6]	T	C	2.003e^-4	0.759	SYNONYMOUS_CODING bl UTR_5_PRIME bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13798113	2R_13798113_SNP [dm3] 2R_17910608_SNP [dm6]	A	G	2.014e^-4	0.759	INTRON Elk
2R	10463613	2R_10463613_SNP [dm3] 2R_14576108_SNP [dm6]	G	A	2.014e^-4	0.759	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19668829	2R_19668829_SNP [dm3] 2R_23781306_SNP [dm6]	A	T	2.028e^-4	0.759	INTRON CG9850
3L	1421476	3L_1421476_SNP [dm3] 3L_1421476_SNP [dm6]	T	C	2.031e^-4	0.759	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad
3L	9811252	3L_9811252_SNP [dm3] 3L_9818152_SNP [dm6]	G	A	2.038e^-4	0.759	INTRON CG43897	TF binding site BDTNP1_TFBS_sna
2R	8359743	2R_8359743_SNP [dm3] 2R_12472238_SNP [dm6]	G	A	2.052e^-4	0.759	SYNONYMOUS_CODING CG8550 UPSTREAM dgt5 DOWNSTREAM CG8545
2L	5477077	2L_5477077_SNP [dm3] 2L_5477077_SNP [dm6]	G	T	2.055e^-4	0.759	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	6424690	X_6424690_SNP [dm3] X_6530657_SNP [dm6]	A	C	2.061e^-4	0.759	SYNONYMOUS_CODING Spat DOWNSTREAM RpL7A & 1 other	TF binding site mE1_TFBS_cad
2L	2395911	2L_2395911_SNP [dm3] 2L_2395911_SNP [dm6]	A	G	2.069e^-4	0.759	INTRON VGlut
3L	18307806	3L_18307806_SNP [dm3] 3L_18314706_SNP [dm6]	T	G	2.077e^-4	0.759	INTERGENIC
2L	15086569	2L_15086569_SNP [dm3] 2L_15086569_SNP [dm6]	T	C	2.081e^-4	0.759	INTRON CG15270
2L	3776092	2L_3776092_SNP [dm3] 2L_3776092_SNP [dm6]	T	C	2.082e^-4	0.759	INTRON bowl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	11575809	3L_11575809_SNP [dm3] 3L_11582709_SNP [dm6]	A	T	2.086e^-4	0.759	SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
3R	23722861	3R_23722861_SNP [dm3] 3R_27897139_SNP [dm6]	G	A	2.090e^-4	0.759	INTRON CG34353
3L	18420071	3L_18420071_SNP [dm3] 3L_18426971_SNP [dm6]	C	G	2.096e^-4	0.759	INTERGENIC
3L	11575814	3L_11575814_SNP [dm3] 3L_11582714_SNP [dm6]	C	T	2.098e^-4	0.759	NON_SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
X	7885677	X_7885677_SNP [dm3] X_7991644_SNP [dm6]	T	C	2.101e^-4	0.759	INTERGENIC
3L	10812693	3L_10812693_SNP [dm3] 3L_10819593_SNP [dm6]	C	A	2.101e^-4	0.759	INTERGENIC
2L	2395903	2L_2395903_SNP [dm3] 2L_2395903_SNP [dm6]	A	G	2.102e^-4	0.759	INTRON VGlut
3L	7778803	3L_7778803_SNP [dm3] 3L_7785703_SNP [dm6]	C	T	2.105e^-4	0.759	INTRON CG32369
3L	9331631	3L_9331631_SNP [dm3] 3L_9338531_SNP [dm6]	A	G	2.107e^-4	0.759	UPSTREAM PGRP-LC DOWNSTREAM PGRP-LA INTERGENIC
3L	12810460	3L_12810460_SNP [dm3] 3L_12817360_SNP [dm6]	T	C	2.117e^-4	0.759	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2543323	2L_2543323_SNP [dm3] 2L_2543323_SNP [dm6]	G	T	2.119e^-4	0.759	INTERGENIC
2R	1321140	2R_1321140_SNP [dm3] 2R_5433635_SNP [dm6]	A	G	2.130e^-4	0.759	INTRON laccase2	transposable element FlyBase
2R	6419903	2R_6419903_SNP [dm3] 2R_10532398_SNP [dm6]	G	A	2.132e^-4	0.759	SYNONYMOUS_CODING lola	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	5592216	2L_5592216_SNP [dm3] 2L_5592216_SNP [dm6]	C	G	2.133e^-4	0.759	INTERGENIC
2R	9086131	2R_9086131_SNP [dm3] 2R_13198626_SNP [dm6]	T	A	2.133e^-4	0.759	UPSTREAM Aats-val & 1 other INTERGENIC
2L	2267211	2L_2267211_SNP [dm3] 2L_2267211_SNP [dm6]	C	T	2.135e^-4	0.759	DOWNSTREAM CG17242 INTERGENIC
3L	13430297	3L_13430297_SNP [dm3] 3L_13437197_SNP [dm6]	T	C	2.136e^-4	0.759	UPSTREAM CG10725 & 1 other INTERGENIC
2L	9442862	2L_9442862_SNP [dm3] 2L_9442862_SNP [dm6]	C	A	2.140e^-4	0.759	INTRON numb
2R	7452940	2R_7452940_SNP [dm3] 2R_11565435_SNP [dm6]	A	C	2.146e^-4	0.759	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9436948	2L_9436948_SNP [dm3] 2L_9436948_SNP [dm6]	A	G	2.147e^-4	0.759	UTR_5_PRIME RpS28-like UPSTREAM numb DOWNSTREAM CG3769	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17298588	X_17298588_SNP [dm3] X_17404555_SNP [dm6]	A	G	2.154e^-4	0.759	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	23716071	3R_23716071_SNP [dm3] 3R_27890349_SNP [dm6]	G	A	2.161e^-4	0.759	INTRON CG34353
2L	3413153	2L_3413153_DEL [dm3] 2L_3413153_DEL [dm6]	GTGCCCGAAGGCCCAG...	G	2.164e^-4	0.759	INTRON pgant2
3L	10984205	3L_10984205_SNP [dm3] 3L_10991105_SNP [dm6]	C	T	2.165e^-4	0.759	INTRON klu	TF binding site BDTNP1_TFBS_dl
2R	5084104	2R_5084104_SNP [dm3] 2R_9196599_SNP [dm6]	T	G	2.166e^-4	0.759	INTRON unpg
2R	10463606	2R_10463606_SNP [dm3] 2R_14576101_SNP [dm6]	G	T	2.170e^-4	0.759	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14320591	X_14320591_SNP [dm3] X_14426558_SNP [dm6]	G	A	2.173e^-4	0.759	INTRON dpr8
2L	9358420	2L_9358420_SNP [dm3] 2L_9358420_SNP [dm6]	A	G	2.174e^-4	0.759	INTERGENIC
3L	1469712	3L_1469712_SNP [dm3] 3L_1469712_SNP [dm6]	G	C	2.175e^-4	0.759	DOWNSTREAM rho INTRON Ptp61F
2L	9411301	2L_9411301_SNP [dm3] 2L_9411301_SNP [dm6]	T	C	2.177e^-4	0.759	INTRON Shawl
2R	10854043	2R_10854043_SNP [dm3] 2R_14966538_SNP [dm6]	C	G	2.181e^-4	0.759	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9567301	3R_9567301_SNP [dm3] 3R_13741579_SNP [dm6]	T	C	2.184e^-4	0.759	INTRON CG34383
3L	16972082	3L_16972082_SNP [dm3] 3L_16978982_SNP [dm6]	T	A	2.188e^-4	0.759	INTRON Exn
2L	7153075	2L_7153075_SNP [dm3] 2L_7153075_SNP [dm6]	G	A	2.192e^-4	0.759	INTRON Pvf3
2L	1388908	2L_1388908_SNP [dm3] 2L_1388908_SNP [dm6]	G	C	2.202e^-4	0.759	INTRON lea
X	17312341	X_17312341_SNP [dm3] X_17418308_SNP [dm6]	C	T	2.205e^-4	0.759	INTRON CG8611
2R	17319223	2R_17319223_SNP [dm3] 2R_21431718_SNP [dm6]	C	T	2.206e^-4	0.759	INTRON Sdc
3R	14058507	3R_14058507_SNP [dm3] 3R_18232785_SNP [dm6]	A	G	2.211e^-4	0.759	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20975053	3R_20975053_SNP [dm3] 3R_25149331_SNP [dm6]	C	A	2.213e^-4	0.759	INTERGENIC
2R	9086136	2R_9086136_SNP [dm3] 2R_13198631_SNP [dm6]	G	C	2.215e^-4	0.759	UPSTREAM Aats-val & 1 other INTERGENIC
X	17622000	X_17622000_SNP [dm3] X_17727967_SNP [dm6]	G	A	2.218e^-4	0.759	INTRON CG42684
X	13974966	X_13974966_SNP [dm3] X_14080933_SNP [dm6]	A	T	2.221e^-4	0.759	INTERGENIC
2L	9358346	2L_9358346_SNP [dm3] 2L_9358346_SNP [dm6]	G	A	2.227e^-4	0.759	INTERGENIC
3L	15278560	3L_15278560_SNP [dm3] 3L_15285460_SNP [dm6]	T	C	2.229e^-4	0.759	INTERGENIC
2R	17319218	2R_17319218_SNP [dm3] 2R_21431713_SNP [dm6]	A	G	2.234e^-4	0.759	INTRON Sdc
2R	17861133	2R_17861133_SNP [dm3] 2R_21973628_SNP [dm6]	A	G	2.236e^-4	0.759	SYNONYMOUS_CODING CG9304	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8760502	3R_8760502_SNP [dm3] 3R_12934780_SNP [dm6]	A	G	2.242e^-4	0.759	UTR_3_PRIME beat-Vb
2R	6534300	2R_6534300_SNP [dm3] 2R_10646795_SNP [dm6]	C	T	2.250e^-4	0.759	NON_SYNONYMOUS_CODING Elp2	TF binding site mE1_TFBS_sens
2L	17761403	2L_17761403_SNP [dm3] 2L_17761403_SNP [dm6]	A	T	2.251e^-4	0.759	INTRON CadN
3R	23717713	3R_23717713_SNP [dm3] 3R_27891991_SNP [dm6]	G	A	2.258e^-4	0.759	INTRON CG34353
2R	16570390	2R_16570390_SNP [dm3] 2R_20682885_SNP [dm6]	T	A	2.265e^-4	0.759	INTERGENIC
2R	6533068	2R_6533068_SNP [dm3] 2R_10645563_SNP [dm6]	A	C	2.266e^-4	0.759	UPSTREAM Elp2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	19622114	2L_19622114_INS [dm3] 2L_19622114_INS [dm6]	G	GTGGAGGG	2.270e^-4	0.759	INTRON Lar
3R	18575546	3R_18575546_SNP [dm3] 3R_22749824_SNP [dm6]	T	A	2.272e^-4	0.759	SYNONYMOUS_CODING rumi UPSTREAM CG31139	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3L	1420768	3L_1420768_SNP [dm3] 3L_1420768_SNP [dm6]	A	T	2.274e^-4	0.759	DOWNSTREAM CG9173 INTRON Ptp61F
2R	6634585	2R_6634585_SNP [dm3] 2R_10747080_SNP [dm6]	C	G	2.277e^-4	0.759	INTRON CG33144
2L	11915119	2L_11915119_SNP [dm3] 2L_11915119_SNP [dm6]	A	G	2.278e^-4	0.759	INTRON Pde1c
2R	16584303	2R_16584303_DEL [dm3] 2R_20696798_DEL [dm6]	CTTC	C	2.294e^-4	0.762	INTERGENIC
2L	2264898	2L_2264898_SNP [dm3] 2L_2264898_SNP [dm6]	A	C	2.294e^-4	0.762	SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
2R	13799019	2R_13799019_SNP [dm3] 2R_17911514_SNP [dm6]	T	C	2.303e^-4	0.763	INTRON Elk
X	17292284	X_17292284_SNP [dm3] X_17398251_SNP [dm6]	G	T	2.319e^-4	0.765	SYNONYMOUS_CODING B-H1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9444246	2L_9444246_SNP [dm3] 2L_9444246_SNP [dm6]	C	T	2.327e^-4	0.765	INTRON numb
2L	11915315	2L_11915315_SNP [dm3] 2L_11915315_SNP [dm6]	T	C	2.332e^-4	0.765	INTRON Pde1c
3L	12300767	3L_12300767_SNP [dm3] 3L_12307667_SNP [dm6]	G	C	2.332e^-4	0.765	INTERGENIC
3L	14038615	3L_14038615_SNP [dm3] 3L_14045515_SNP [dm6]	C	T	2.337e^-4	0.765	SYNONYMOUS_CODING blue
2L	1932532	2L_1932532_SNP [dm3] 2L_1932532_SNP [dm6]	A	T	2.343e^-4	0.765	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	8607126	3L_8607126_SNP [dm3] 3L_8614026_SNP [dm6]	T	C	2.347e^-4	0.765	INTRON CG6282
3L	15323753	3L_15323753_SNP [dm3] 3L_15330653_SNP [dm6]	T	A	2.348e^-4	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9411013	2L_9411013_SNP [dm3] 2L_9411013_SNP [dm6]	C	T	2.349e^-4	0.765	INTRON Shawl
X	17297872	X_17297872_SNP [dm3] X_17403839_SNP [dm6]	G	A	2.353e^-4	0.765	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	16524967	3L_16524967_INS [dm3] 3L_16531867_INS [dm6]	A	AT	2.354e^-4	0.765	INTRON CG43373
2R	10824005	2R_10824005_SNP [dm3] 2R_14936500_SNP [dm6]	C	T	2.364e^-4	0.767	INTRON Lap1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17112281	2R_17112281_SNP [dm3] 2R_21224776_SNP [dm6]	C	G	2.370e^-4	0.768	UPSTREAM ASPP INTRON ASPP
3R	20579555	3R_20579555_SNP [dm3] 3R_24753833_SNP [dm6]	C	T	2.374e^-4	0.768	UPSTREAM asp DOWNSTREAM tld INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	6602059	3L_6602059_SNP [dm3] 3L_6608959_SNP [dm6]	T	C	2.385e^-4	0.77	UPSTREAM CG8398 DOWNSTREAM CG8368 EXON CR45418
3R	13379116	3R_13379116_SNP [dm3] 3R_17553394_SNP [dm6]	T	C	2.391e^-4	0.771	INTERGENIC
3R	23782888	3R_23782888_SNP [dm3] 3R_27957166_SNP [dm6]	T	C	2.406e^-4	0.774	SYNONYMOUS_CODING CG5527 DOWNSTREAM CG42487 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13240518	2L_13240518_SNP [dm3] 2L_13240518_SNP [dm6]	G	A	2.413e^-4	0.775	NON_SYNONYMOUS_CODING CG5945	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12267235	2R_12267235_SNP [dm3] 2R_16379730_SNP [dm6]	T	C	2.427e^-4	0.778	UPSTREAM CG43187 EXON CR45316 & 1 other
3L	18363478	3L_18363478_SNP [dm3] 3L_18370378_SNP [dm6]	A	T	2.433e^-4	0.779	INTERGENIC
3L	16764713	3L_16764713_SNP [dm3] 3L_16771613_SNP [dm6]	T	A	2.446e^-4	0.779	INTRON Nrt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4513528	3L_4513528_SNP [dm3] 3L_4513528_SNP [dm6]	T	G	2.447e^-4	0.779	SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2925619	3L_2925619_SNP [dm3] 3L_2925619_SNP [dm6]	A	C	2.452e^-4	0.779	INTRON Shab
2R	12267174	2R_12267174_SNP [dm3] 2R_16379669_SNP [dm6]	G	A	2.459e^-4	0.779	UPSTREAM CG43187 EXON CR45316 & 1 other
3L	11389769	3L_11389769_SNP [dm3] 3L_11396669_SNP [dm6]	C	T	2.461e^-4	0.779	UPSTREAM CG44362 DOWNSTREAM CG11726 INTERGENIC
2R	19267321	2R_19267321_SNP [dm3] 2R_23379798_SNP [dm6]	G	T	2.462e^-4	0.779	SYNONYMOUS_CODING yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9777840	2R_9777840_SNP [dm3] 2R_13890335_SNP [dm6]	A	G	2.468e^-4	0.779	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19084074	X_19084074_SNP [dm3] X_19190041_SNP [dm6]	A	G	2.468e^-4	0.779	NON_SYNONYMOUS_CODING Mec2 UPSTREAM HP1D3csd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10874179	2R_10874179_SNP [dm3] 2R_14986674_SNP [dm6]	T	G	2.483e^-4	0.78	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1675997	2L_1675997_SNP [dm3] 2L_1675997_SNP [dm6]	C	T	2.486e^-4	0.78	INTRON chinmo
X	17506054	X_17506054_SNP [dm3] X_17612021_SNP [dm6]	A	G	2.488e^-4	0.78	INTERGENIC
2L	15960321	2L_15960321_SNP [dm3] 2L_15960321_SNP [dm6]	G	A	2.493e^-4	0.78	DOWNSTREAM CG18063 INTRON beat-Ib EXON CR43803
3R	26892425	3R_26892425_SNP [dm3] 3R_31066703_SNP [dm6]	G	A	2.498e^-4	0.78	INTRON Sox100B	TF binding site mE1_TFBS_HSA
2R	16486534	2R_16486534_SNP [dm3] 2R_20599029_SNP [dm6]	C	A	2.510e^-4	0.78	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16465332	2R_16465332_SNP [dm3] 2R_20577827_SNP [dm6]	C	T	2.510e^-4	0.78	INTRON qsm
2R	8508549	2R_8508549_SNP [dm3] 2R_12621044_SNP [dm6]	C	T	2.515e^-4	0.78	UTR_3_PRIME Galphaq
3L	11321536	3L_11321536_SNP [dm3] 3L_11328436_SNP [dm6]	T	A	2.516e^-4	0.78	INTERGENIC
3L	7737255	3L_7737255_SNP [dm3] 3L_7744155_SNP [dm6]	A	C	2.518e^-4	0.78	INTRON CG32373
3L	12200643	3L_12200643_SNP [dm3] 3L_12207543_SNP [dm6]	T	C	2.524e^-4	0.78	SYNONYMOUS_CODING app UTR_3_PRIME app	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	20198752	3L_20198752_SNP [dm3] 3L_20205652_SNP [dm6]	G	A	2.526e^-4	0.78	SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1469728	2L_1469728_SNP [dm3] 2L_1469728_SNP [dm6]	G	A	2.533e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	12300766	3L_12300766_SNP [dm3] 3L_12307666_SNP [dm6]	G	A	2.534e^-4	0.78	INTERGENIC
3L	1997149	3L_1997149_SNP [dm3] 3L_1997149_SNP [dm6]	T	G	2.566e^-4	0.78	INTERGENIC
3L	18091361	3L_18091361_DEL [dm3] 3L_18098261_DEL [dm6]	CTA	C	2.567e^-4	0.78	INTRON CG13698
2R	6533954	2R_6533954_SNP [dm3] 2R_10646449_SNP [dm6]	A	G	2.568e^-4	0.78	NON_SYNONYMOUS_CODING Elp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
2R	6533061	2R_6533061_SNP [dm3] 2R_10645556_SNP [dm6]	G	A	2.570e^-4	0.78	UPSTREAM Elp2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	11187393	3L_11187393_SNP [dm3] 3L_11194293_SNP [dm6]	G	A	2.571e^-4	0.78	INTRON GlcAT-P
X	8434911	X_8434911_SNP [dm3] X_8540878_SNP [dm6]	C	T	2.571e^-4	0.78	INTRON Nrg
2L	1703371	2L_1703371_SNP [dm3] 2L_1703371_SNP [dm6]	C	A	2.574e^-4	0.78	UTR_3_PRIME chinmo
3R	26013715	3R_26013715_SNP [dm3] 3R_30187993_SNP [dm6]	C	T	2.583e^-4	0.78	INTRON CG9747
3L	10815105	3L_10815105_SNP [dm3] 3L_10822005_SNP [dm6]	G	T	2.588e^-4	0.78	INTERGENIC
3L	10780877	3L_10780877_SNP [dm3] 3L_10787777_SNP [dm6]	A	T	2.593e^-4	0.78	INTERGENIC
3R	10040179	3R_10040179_SNP [dm3] 3R_14214457_SNP [dm6]	G	T	2.598e^-4	0.78	UTR_5_PRIME Dop1R1
X	7885604	X_7885604_DEL [dm3] X_7991571_DEL [dm6]	GAAG	G	2.605e^-4	0.78	INTERGENIC
2R	6533065	2R_6533065_SNP [dm3] 2R_10645560_SNP [dm6]	A	G	2.614e^-4	0.78	UPSTREAM Elp2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	1193540	2L_1193540_SNP [dm3] 2L_1193540_SNP [dm6]	A	C	2.616e^-4	0.78	INTRON CG5001
2L	15093497	2L_15093497_SNP [dm3] 2L_15093497_SNP [dm6]	G	A	2.619e^-4	0.78	SYNONYMOUS_CODING CG15270
3R	23720085	3R_23720085_SNP [dm3] 3R_27894363_SNP [dm6]	G	T	2.620e^-4	0.78	INTRON CG34353
3L	13445753	3L_13445753_SNP [dm3] 3L_13452653_SNP [dm6]	A	T	2.620e^-4	0.78	INTRON CG10738
X	14115988	X_14115988_SNP [dm3] X_14221955_SNP [dm6]	T	C	2.620e^-4	0.78	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17283929	2R_17283929_SNP [dm3] 2R_21396424_SNP [dm6]	C	T	2.625e^-4	0.78	INTRON Sdc
3L	4369608	3L_4369608_SNP [dm3] 3L_4369608_SNP [dm6]	T	C	2.627e^-4	0.78	SYNONYMOUS_CODING DopEcR
2R	19950245	2R_19950245_SNP [dm3] 2R_24062722_SNP [dm6]	T	G	2.629e^-4	0.78	UPSTREAM Rap2l & 1 other DOWNSTREAM RpL12 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13128387	3L_13128387_SNP [dm3] 3L_13135287_SNP [dm6]	C	G	2.635e^-4	0.78	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6707843	2R_6707843_SNP [dm3] 2R_10820338_SNP [dm6]	C	A	2.640e^-4	0.78	SYNONYMOUS_CODING Prosbeta5 UPSTREAM dgo DOWNSTREAM Lsm10	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	11645158	2L_11645158_SNP [dm3] 2L_11645158_SNP [dm6]	A	T	2.646e^-4	0.78	UTR_3_PRIME CG6614
3R	9265751	3R_9265751_SNP [dm3] 3R_13440029_SNP [dm6]	A	T	2.648e^-4	0.78	UPSTREAM CR42756 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14084652	3R_14084652_SNP [dm3] 3R_18258930_SNP [dm6]	G	C	2.649e^-4	0.78	INTERGENIC
3L	11582751	3L_11582751_SNP [dm3] 3L_11589651_SNP [dm6]	T	C	2.652e^-4	0.78	UPSTREAM CG7377 INTERGENIC
3L	3277960	3L_3277960_SNP [dm3] 3L_3277960_SNP [dm6]	A	C	2.655e^-4	0.78	INTERGENIC
2L	21947690	2L_21947690_INS [dm3] 2L_21947690_INS [dm6]	G	GA	2.660e^-4	0.78	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18380637	3L_18380637_SNP [dm3] 3L_18387537_SNP [dm6]	G	T	2.665e^-4	0.78	INTERGENIC
3R	19204956	3R_19204956_SNP [dm3] 3R_23379234_SNP [dm6]	T	C	2.668e^-4	0.78	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7367682	2L_7367682_SNP [dm3] 2L_7367682_SNP [dm6]	C	G	2.673e^-4	0.78	INTRON Wnt10
2L	1678978	2L_1678978_DEL [dm3] 2L_1678978_DEL [dm6]	TTAATTTGGGGAACCCATA...	T	2.678e^-4	0.78	INTRON chinmo
3R	19213829	3R_19213829_SNP [dm3] 3R_23388107_SNP [dm6]	C	T	2.679e^-4	0.78	DOWNSTREAM CG31515 INTERGENIC
3R	23488233	3R_23488233_SNP [dm3] 3R_27662511_SNP [dm6]	G	A	2.680e^-4	0.78	INTRON unc80
2L	1469864	2L_1469864_SNP [dm3] 2L_1469864_SNP [dm6]	A	T	2.681e^-4	0.78	INTERGENIC
2R	6534638	2R_6534638_SNP [dm3] 2R_10647133_SNP [dm6]	T	C	2.683e^-4	0.78	SYNONYMOUS_CODING Elp2	TF binding site mE1_TFBS_sens
2L	1193541	2L_1193541_DEL [dm3] 2L_1193541_DEL [dm6]	AA	A	2.689e^-4	0.781	INTRON CG5001
2R	14966137	2R_14966137_SNP [dm3] 2R_19078632_SNP [dm6]	G	A	2.701e^-4	0.782	INTRON 5-HT1A
2L	9810614	2L_9810614_SNP [dm3] 2L_9810614_SNP [dm6]	A	T	2.703e^-4	0.782	INTRON nAChRalpha6
X	7885681	X_7885681_DEL [dm3] X_7991648_DEL [dm6]	TACATA	T	2.717e^-4	0.785	INTERGENIC
3R	25545401	3R_25545401_SNP [dm3] 3R_29719679_SNP [dm6]	A	T	2.734e^-4	0.785	INTRON CG15506	regulatory region REDfly_CRMs
2L	9358412	2L_9358412_SNP [dm3] 2L_9358412_SNP [dm6]	A	T	2.745e^-4	0.785	INTERGENIC
2R	18870974	2R_18870974_SNP [dm3] 2R_22983451_SNP [dm6]	C	G	2.751e^-4	0.785	SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14204526	3L_14204526_SNP [dm3] 3L_14211426_SNP [dm6]	T	C	2.751e^-4	0.785	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	18201932	3L_18201932_SNP [dm3] 3L_18208832_SNP [dm6]	G	T	2.768e^-4	0.785	INTERGENIC
2R	7404517	2R_7404517_SNP [dm3] 2R_11517012_SNP [dm6]	C	G	2.770e^-4	0.785	INTERGENIC
2R	19005278	2R_19005278_SNP [dm3] 2R_23117755_SNP [dm6]	G	A	2.777e^-4	0.785	INTERGENIC
2R	8507089	2R_8507089_SNP [dm3] 2R_12619584_SNP [dm6]	C	T	2.780e^-4	0.785	UTR_3_PRIME CG45086 & 1 other DOWNSTREAM Galphaq	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3L	4587052	3L_4587052_SNP [dm3] 3L_4587052_SNP [dm6]	T	A	2.781e^-4	0.785	INTRON CG42540
3L	4587068	3L_4587068_DEL [dm3] 3L_4587068_DEL [dm6]	ACAAAATTCTAATAAGGT...	A	2.781e^-4	0.785	INTRON CG42540
3R	23923140	3R_23923140_SNP [dm3] 3R_28097418_SNP [dm6]	G	T	2.783e^-4	0.785	INTERGENIC
3R	23923142	3R_23923142_SNP [dm3] 3R_28097420_SNP [dm6]	T	C	2.783e^-4	0.785	INTERGENIC
X	17296765	X_17296765_SNP [dm3] X_17402732_SNP [dm6]	A	T	2.785e^-4	0.785	UTR_3_PRIME B-H1
X	17313394	X_17313394_SNP [dm3] X_17419361_SNP [dm6]	A	C	2.786e^-4	0.785	INTRON CG8611
X	17621884	X_17621884_SNP [dm3] X_17727851_SNP [dm6]	A	G	2.786e^-4	0.785	INTRON CG42684
X	6947615	X_6947615_SNP [dm3] X_7053582_SNP [dm6]	G	A	2.800e^-4	0.785	INTRON CG12541
3L	8325258	3L_8325258_SNP [dm3] 3L_8332158_SNP [dm6]	T	C	2.807e^-4	0.785	INTERGENIC
3L	2029853	3L_2029853_SNP [dm3] 3L_2029853_SNP [dm6]	T	A	2.808e^-4	0.785	INTERGENIC
2R	16278988	2R_16278988_SNP [dm3] 2R_20391483_SNP [dm6]	C	A	2.816e^-4	0.785	INTERGENIC
2L	13468170	2L_13468170_SNP [dm3] 2L_13468170_SNP [dm6]	A	G	2.817e^-4	0.785	INTRON CG42784
2L	14138729	2L_14138729_SNP [dm3] 2L_14138729_SNP [dm6]	G	A	2.821e^-4	0.785	INTRON CG17341
2R	15826844	2R_15826844_SNP [dm3] 2R_19939339_SNP [dm6]	A	T	2.823e^-4	0.785	DOWNSTREAM CR43421 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14316547	2R_14316547_SNP [dm3] 2R_18429042_SNP [dm6]	G	A	2.827e^-4	0.785	SYNONYMOUS_CODING CG12263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13778749	3L_13778749_SNP [dm3] 3L_13785649_SNP [dm6]	A	T	2.828e^-4	0.785	INTRON bru-3
2R	18477781	2R_18477781_SNP [dm3] 2R_22590276_SNP [dm6]	A	G	2.832e^-4	0.785	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12300772	3L_12300772_SNP [dm3] 3L_12307672_SNP [dm6]	A	T	2.835e^-4	0.785	INTERGENIC
2R	6896641	2R_6896641_SNP [dm3] 2R_11009136_SNP [dm6]	C	T	2.851e^-4	0.785	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17506517	X_17506517_SNP [dm3] X_17612484_SNP [dm6]	T	A	2.851e^-4	0.785	INTERGENIC
2L	8308674	2L_8308674_SNP [dm3] 2L_8308674_SNP [dm6]	T	C	2.854e^-4	0.785	SPLICE_SITE_REGION CG7818 UPSTREAM Ostgamma INTRON CG7818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	11769509	2R_11769509_SNP [dm3] 2R_15882004_SNP [dm6]	A	G	2.858e^-4	0.785	INTRON sli
3R	8931988	3R_8931988_SNP [dm3] 3R_13106266_SNP [dm6]	C	T	2.859e^-4	0.785	INTRON timeout
X	13939535	X_13939535_SNP [dm3] X_14045502_SNP [dm6]	C	T	2.859e^-4	0.785	INTERGENIC
2R	19954862	2R_19954862_SNP [dm3] 2R_24067339_SNP [dm6]	A	T	2.862e^-4	0.785	INTRON yki
2L	4473554	2L_4473554_SNP [dm3] 2L_4473554_SNP [dm6]	A	T	2.863e^-4	0.785	UPSTREAM ine INTRON ine
3L	11179056	3L_11179056_SNP [dm3] 3L_11185956_SNP [dm6]	G	C	2.863e^-4	0.785	INTRON GlcAT-P
3R	23488265	3R_23488265_SNP [dm3] 3R_27662543_SNP [dm6]	A	G	2.875e^-4	0.786	INTRON unc80
3L	5611386	3L_5611386_SNP [dm3] 3L_5618286_SNP [dm6]	A	C	2.880e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	1380286	2R_1380286_SNP [dm3] 2R_5492781_SNP [dm6]	G	A	2.880e^-4	0.786	INTRON CG30440	transposable element FlyBase
3R	24816256	3R_24816256_SNP [dm3] 3R_28990534_SNP [dm6]	C	T	2.888e^-4	0.787	INTERGENIC	TF binding site mE1_TFBS_Trl
X	3263289	X_3263289_SNP [dm3] X_3369256_SNP [dm6]	A	T	2.891e^-4	0.787	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
X	7875529	X_7875529_SNP [dm3] X_7981496_SNP [dm6]	C	T	2.901e^-4	0.787	INTRON sn
2L	7443514	2L_7443514_SNP [dm3] 2L_7443514_SNP [dm6]	T	C	2.902e^-4	0.787	UPSTREAM CG5973 INTRON CG5973
3L	11461871	3L_11461871_SNP [dm3] 3L_11468771_SNP [dm6]	T	G	2.908e^-4	0.787	INTERGENIC
2L	11915306	2L_11915306_SNP [dm3] 2L_11915306_SNP [dm6]	T	A	2.909e^-4	0.787	INTRON Pde1c
3L	2549572	3L_2549572_SNP [dm3] 3L_2549572_SNP [dm6]	G	A	2.912e^-4	0.787	INTRON Spn
3R	24112664	3R_24112664_SNP [dm3] 3R_28286942_SNP [dm6]	G	C	2.916e^-4	0.787	INTERGENIC
3L	11180021	3L_11180021_SNP [dm3] 3L_11186921_SNP [dm6]	G	C	2.919e^-4	0.787	INTRON GlcAT-P
3R	23709416	3R_23709416_SNP [dm3] 3R_27883694_SNP [dm6]	G	A	2.926e^-4	0.787	INTRON CG34353
3R	5853615	3R_5853615_SNP [dm3] 3R_10027893_SNP [dm6]	A	G	2.939e^-4	0.789	INTRON Mical
3L	18307808	3L_18307808_SNP [dm3] 3L_18314708_SNP [dm6]	A	C	2.940e^-4	0.789	INTERGENIC
2L	11150295	2L_11150295_SNP [dm3] 2L_11150295_SNP [dm6]	C	T	2.947e^-4	0.789	INTERGENIC
3L	12200637	3L_12200637_SNP [dm3] 3L_12207537_SNP [dm6]	G	T	2.950e^-4	0.789	SYNONYMOUS_CODING app UTR_3_PRIME app	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13209024	3L_13209024_SNP [dm3] 3L_13215924_SNP [dm6]	C	T	2.953e^-4	0.789	UPSTREAM CR43914 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17760879	2L_17760879_SNP [dm3] 2L_17760879_SNP [dm6]	G	A	2.979e^-4	0.789	INTRON CadN
2R	11708114	2R_11708114_SNP [dm3] 2R_15820609_SNP [dm6]	A	T	2.980e^-4	0.789	NON_SYNONYMOUS_CODING CG33465 INTRON tun
3L	12811322	3L_12811322_SNP [dm3] 3L_12818222_SNP [dm6]	C	A	2.982e^-4	0.789	NON_SYNONYMOUS_CODING CG42588
3L	10917916	3L_10917916_SNP [dm3] 3L_10924816_SNP [dm6]	C	G	2.985e^-4	0.789	INTERGENIC
3L	5601405	3L_5601405_SNP [dm3] 3L_5608305_SNP [dm6]	A	T	2.987e^-4	0.789	UPSTREAM Eaf6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	10625702	3R_10625702_SNP [dm3] 3R_14799980_SNP [dm6]	A	C	3.009e^-4	0.789	SYNONYMOUS_CODING CG14856
3L	10980161	3L_10980161_INS [dm3] 3L_10987061_INS [dm6]	G	TGT	3.016e^-4	0.789	INTRON klu	TF binding site BDTNP1_TFBS_dl
3L	10249490	3L_10249490_SNP [dm3] 3L_10256390_SNP [dm6]	G	A	3.026e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_cad
2L	20068433	2L_20068433_DEL [dm3] 2L_20068433_DEL [dm6]	TT	T	3.030e^-4	0.789	DOWNSTREAM CR44907 INTRON bwa
3L	2028747	3L_2028747_SNP [dm3] 3L_2028747_SNP [dm6]	G	A	3.040e^-4	0.789	DOWNSTREAM CG34259 INTERGENIC
2R	20362876	2R_20362876_SNP [dm3] 2R_24475353_SNP [dm6]	A	G	3.052e^-4	0.789	UPSTREAM CG16837 DOWNSTREAM CG3494 INTRON CG13579
2R	17458561	2R_17458561_SNP [dm3] 2R_21571056_SNP [dm6]	G	A	3.052e^-4	0.789	INTRON CG10440	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	11963977	2R_11963977_MNP [dm3] 2R_16076472_MNP [dm6]	GTA	TAC	3.053e^-4	0.789	INTERGENIC
2L	8927172	2L_8927172_SNP [dm3] 2L_8927172_SNP [dm6]	T	A	3.053e^-4	0.789	SPLICE_SITE_REGION CG34398 INTRON CG34398	TF binding site mE1_TFBS_cad
3L	4178952	3L_4178952_SNP [dm3] 3L_4178952_SNP [dm6]	G	T	3.056e^-4	0.789	UPSTREAM Teh4 DOWNSTREAM Teh2 INTRON CG18675
3L	16971971	3L_16971971_SNP [dm3] 3L_16978871_SNP [dm6]	T	C	3.057e^-4	0.789	INTRON Exn
2R	13799437	2R_13799437_SNP [dm3] 2R_17911932_SNP [dm6]	C	G	3.067e^-4	0.789	INTRON Elk
3L	13445897	3L_13445897_SNP [dm3] 3L_13452797_SNP [dm6]	G	T	3.071e^-4	0.789	INTRON CG10738
3L	17916897	3L_17916897_SNP [dm3] 3L_17923797_SNP [dm6]	T	C	3.073e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14458157	3R_14458157_SNP [dm3] 3R_18632435_SNP [dm6]	C	T	3.079e^-4	0.789	INTRON qin & 1 other
3L	15283726	3L_15283726_SNP [dm3] 3L_15290626_SNP [dm6]	T	C	3.081e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22877535	3R_22877535_INS [dm3] 3R_27051813_INS [dm6]	T	TAT	3.092e^-4	0.789	DOWNSTREAM TwdlT INTRON RYa-R
2L	16965124	2L_16965124_SNP [dm3] 2L_16965124_SNP [dm6]	C	T	3.092e^-4	0.789	UPSTREAM CR45285 INTERGENIC
2R	1384895	2R_1384895_SNP [dm3] 2R_5497390_SNP [dm6]	C	T	3.095e^-4	0.789	INTRON CG30438
3L	15322754	3L_15322754_SNP [dm3] 3L_15329654_SNP [dm6]	A	T	3.096e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10164555	3L_10164555_SNP [dm3] 3L_10171455_SNP [dm6]	G	A	3.098e^-4	0.789	INTRON dpr10
3L	19461201	3L_19461201_SNP [dm3] 3L_19468101_SNP [dm6]	T	A	3.111e^-4	0.789	UTR_3_PRIME CG32214 DOWNSTREAM CG32214
3L	18399246	3L_18399246_SNP [dm3] 3L_18406146_SNP [dm6]	T	G	3.115e^-4	0.789	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1193509	2L_1193509_SNP [dm3] 2L_1193509_SNP [dm6]	A	G	3.120e^-4	0.789	INTRON CG5001
X	14116002	X_14116002_SNP [dm3] X_14221969_SNP [dm6]	T	G	3.134e^-4	0.789	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14317642	2R_14317642_SNP [dm3] 2R_18430137_SNP [dm6]	A	G	3.138e^-4	0.789	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG30118	TF binding site mE1_TFBS_cad
3L	5601404	3L_5601404_SNP [dm3] 3L_5608304_SNP [dm6]	A	G	3.144e^-4	0.789	UPSTREAM Eaf6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	5601486	3L_5601486_SNP [dm3] 3L_5608386_SNP [dm6]	T	A	3.144e^-4	0.789	UPSTREAM Eaf6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	8998533	3R_8998533_SNP [dm3] 3R_13172811_SNP [dm6]	A	G	3.148e^-4	0.789	INTERGENIC
2R	9677282	2R_9677282_SNP [dm3] 2R_13789777_SNP [dm6]	C	T	3.149e^-4	0.789	INTERGENIC
3L	20739081	3L_20739081_SNP [dm3] 3L_20745981_SNP [dm6]	G	A	3.151e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4587048	3L_4587048_SNP [dm3] 3L_4587048_SNP [dm6]	T	A	3.158e^-4	0.789	INTRON CG42540
3R	12567535	3R_12567535_SNP [dm3] 3R_16741813_SNP [dm6]	C	T	3.163e^-4	0.789	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	12387530	2R_12387530_SNP [dm3] 2R_16500025_SNP [dm6]	C	T	3.167e^-4	0.789	UPSTREAM Sema-2a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4438818	2L_4438818_SNP [dm3] 2L_4438818_SNP [dm6]	T	C	3.168e^-4	0.789	DOWNSTREAM CG43056 INTRON CG15431
3R	25625182	3R_25625182_SNP [dm3] 3R_29799460_SNP [dm6]	C	T	3.172e^-4	0.789	UPSTREAM Ice & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	9171284	2R_9171284_INS [dm3] 2R_13283779_INS [dm6]	G	GG	3.173e^-4	0.789	INTRON Dh31-R
2L	5628259	2L_5628259_DEL [dm3] 2L_5628259_DEL [dm6]	ATAACCATCCTTTCATCGGA...	A	3.175e^-4	0.789	INTRON CG31646	TF binding site BDTNP1_TFBS_twi
3R	23572254	3R_23572254_SNP [dm3] 3R_27746532_SNP [dm6]	G	A	3.182e^-4	0.789	SYNONYMOUS_CODING Ets98B	TF binding site mE1_TFBS_chinmo
3L	18363482	3L_18363482_DEL [dm3] 3L_18370382_DEL [dm6]	TTTAT	T	3.186e^-4	0.789	INTERGENIC
3L	2977026	3L_2977026_SNP [dm3] 3L_2977026_SNP [dm6]	T	C	3.187e^-4	0.789	UPSTREAM CR44530 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13797987	2R_13797987_SNP [dm3] 2R_17910482_SNP [dm6]	A	G	3.194e^-4	0.789	INTRON Elk
2L	7443409	2L_7443409_INS [dm3] 2L_7443409_INS [dm6]	T	TAT	3.204e^-4	0.789	UPSTREAM CG5973 INTRON CG5973
3R	6884341	3R_6884341_SNP [dm3] 3R_11058619_SNP [dm6]	C	T	3.208e^-4	0.789	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10913869	3L_10913869_SNP [dm3] 3L_10920769_SNP [dm6]	T	A	3.210e^-4	0.789	INTERGENIC
3L	11382489	3L_11382489_SNP [dm3] 3L_11389389_SNP [dm6]	G	A	3.211e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10854941	2R_10854941_SNP [dm3] 2R_14967436_SNP [dm6]	T	C	3.212e^-4	0.789	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21305630	2L_21305630_INS [dm3] 2L_21305630_INS [dm6]	T	TAATTAAATTAAAATTAAAA...	3.226e^-4	0.789	INTRON Mio
3L	2382302	3L_2382302_SNP [dm3] 3L_2382302_SNP [dm6]	T	A	3.231e^-4	0.789	INTRON CG45186	TF binding site mE1_TFBS_sens
2L	2482441	2L_2482441_SNP [dm3] 2L_2482441_SNP [dm6]	C	T	3.236e^-4	0.789	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	15399772	2R_15399772_SNP [dm3] 2R_19512267_SNP [dm6]	G	A	3.240e^-4	0.789	SYNONYMOUS_CODING Ir56d DOWNSTREAM Ir56c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	19904583	2R_19904583_SNP [dm3] 2R_24017060_SNP [dm6]	C	T	3.242e^-4	0.789	UTR_5_PRIME CG4324 UPSTREAM CG3121	TF binding site BDTNP1_TFBS_twi
2R	19950928	2R_19950928_SNP [dm3] 2R_24063405_SNP [dm6]	C	T	3.244e^-4	0.789	UTR_5_PRIME Rap2l UPSTREAM RpL39 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19549465	3L_19549465_SNP [dm3] 3L_19556365_SNP [dm6]	C	G	3.249e^-4	0.789	EXON CR44677	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25945315	3R_25945315_SNP [dm3] 3R_30119593_SNP [dm6]	T	C	3.251e^-4	0.789	INTRON sima
2L	2601171	2L_2601171_SNP [dm3] 2L_2601171_SNP [dm6]	G	A	3.253e^-4	0.789	EXON CR44789
X	7645459	X_7645459_SNP [dm3] X_7751426_SNP [dm6]	G	C	3.257e^-4	0.789	INTERGENIC
2R	2476048	2R_2476048_DEL [dm3] 2R_6588543_DEL [dm6]	ATGCAAC	T	3.257e^-4	0.789	INTRON jing
2R	17937673	2R_17937673_SNP [dm3] 2R_22050168_SNP [dm6]	A	G	3.258e^-4	0.789	INTERGENIC
2R	7031027	2R_7031027_SNP [dm3] 2R_11143522_SNP [dm6]	C	T	3.265e^-4	0.789	INTRON CG13229
2L	2150573	2L_2150573_SNP [dm3] 2L_2150573_SNP [dm6]	T	G	3.266e^-4	0.789	SYNONYMOUS_CODING CG7261	TF binding site mE1_TFBS_sens
2R	17982454	2R_17982454_SNP [dm3] 2R_22094949_SNP [dm6]	A	G	3.266e^-4	0.789	INTRON CG11073
X	14115954	X_14115954_SNP [dm3] X_14221921_SNP [dm6]	T	G	3.283e^-4	0.789	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9048808	3R_9048808_SNP [dm3] 3R_13223086_SNP [dm6]	G	C	3.284e^-4	0.789	UTR_3_PRIME Ace
X	4292083	X_4292083_SNP [dm3] X_4398050_SNP [dm6]	G	A	3.290e^-4	0.789	INTRON CR32773
3L	16891600	3L_16891600_SNP [dm3] 3L_16898500_SNP [dm6]	C	A	3.290e^-4	0.789	UPSTREAM Lmpt INTRON Lmpt
3R	20999520	3R_20999520_SNP [dm3] 3R_25173798_SNP [dm6]	G	T	3.292e^-4	0.789	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	14316526	2R_14316526_SNP [dm3] 2R_18429021_SNP [dm6]	C	T	3.296e^-4	0.789	SYNONYMOUS_CODING CG12263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15119385	X_15119385_SNP [dm3] X_15225352_SNP [dm6]	A	T	3.297e^-4	0.789	UPSTREAM CR44430 INTERGENIC
3L	18420122	3L_18420122_SNP [dm3] 3L_18427022_SNP [dm6]	T	C	3.302e^-4	0.789	INTERGENIC
3R	8611515	3R_8611515_SNP [dm3] 3R_12785793_SNP [dm6]	C	G	3.303e^-4	0.789	INTERGENIC
2L	14154462	2L_14154462_SNP [dm3] 2L_14154462_SNP [dm6]	A	G	3.306e^-4	0.789	INTRON CG17341
3L	5484691	3L_5484691_INS [dm3] 3L_5491591_INS [dm6]	C	CT	3.312e^-4	0.789	INTERGENIC
3R	23951706	3R_23951706_SNP [dm3] 3R_28125984_SNP [dm6]	C	T	3.313e^-4	0.789	INTERGENIC
2L	9485940	2L_9485940_SNP [dm3] 2L_9485940_SNP [dm6]	G	C	3.313e^-4	0.789	INTERGENIC
2L	3154968	2L_3154968_SNP [dm3] 2L_3154968_SNP [dm6]	T	G	3.321e^-4	0.789	INTRON Mad
2R	11063133	2R_11063133_DEL [dm3] 2R_15175628_DEL [dm6]	ATGGC	A	3.322e^-4	0.789	INTRON igl
3L	3704143	3L_3704143_SNP [dm3] 3L_3704143_SNP [dm6]	C	T	3.336e^-4	0.789	INTERGENIC
2L	10081905	2L_10081905_SNP [dm3] 2L_10081905_SNP [dm6]	G	A	3.340e^-4	0.789	SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2811767	2L_2811767_SNP [dm3] 2L_2811767_SNP [dm6]	A	G	3.346e^-4	0.789	UTR_3_PRIME daw UPSTREAM CG2964	TF binding site mE1_TFBS_cad
2R	5079032	2R_5079032_SNP [dm3] 2R_9191527_SNP [dm6]	A	T	3.370e^-4	0.789	UTR_5_PRIME CG8026 UTR_3_PRIME CG45085	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2615750	3L_2615750_SNP [dm3] 3L_2615750_SNP [dm6]	G	A	3.371e^-4	0.789	INTRON Pxn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19961081	2L_19961081_SNP [dm3] 2L_19961081_SNP [dm6]	G	A	3.372e^-4	0.789	UPSTREAM CG34051 DOWNSTREAM CG42866 & 1 other INTERGENIC
X	7885573	X_7885573_SNP [dm3] X_7991540_SNP [dm6]	G	A	3.376e^-4	0.789	INTERGENIC
2R	9100959	2R_9100959_SNP [dm3] 2R_13213454_SNP [dm6]	A	C	3.378e^-4	0.789	INTRON AQP
3R	17940756	3R_17940756_SNP [dm3] 3R_22115034_SNP [dm6]	C	A	3.379e^-4	0.789	NON_SYNONYMOUS_CODING Ir94a DOWNSTREAM Ir94b
3R	23782378	3R_23782378_SNP [dm3] 3R_27956656_SNP [dm6]	T	C	3.380e^-4	0.789	SYNONYMOUS_CODING CG5527 DOWNSTREAM CG42487 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11187449	3L_11187449_SNP [dm3] 3L_11194349_SNP [dm6]	A	T	3.386e^-4	0.789	INTRON GlcAT-P
3R	17935102	3R_17935102_SNP [dm3] 3R_22109380_SNP [dm6]	G	A	3.386e^-4	0.789	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12025212	3L_12025212_SNP [dm3] 3L_12032112_SNP [dm6]	G	C	3.387e^-4	0.789	UPSTREAM CG43993 INTRON rols
2L	2026752	2L_2026752_SNP [dm3] 2L_2026752_SNP [dm6]	T	A	3.388e^-4	0.789	INTRON CG4238	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2026755	2L_2026755_SNP [dm3] 2L_2026755_SNP [dm6]	C	T	3.388e^-4	0.789	INTRON CG4238	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19506399	3L_19506399_SNP [dm3] 3L_19513299_SNP [dm6]	A	T	3.388e^-4	0.789	INTERGENIC
2R	18151293	2R_18151293_SNP [dm3] 2R_22263788_SNP [dm6]	A	G	3.388e^-4	0.789	INTRON dve
2L	15549882	2L_15549882_SNP [dm3] 2L_15549882_SNP [dm6]	G	C	3.389e^-4	0.789	UPSTREAM CG15256 EXON CR45728
3R	26005517	3R_26005517_SNP [dm3] 3R_30179795_SNP [dm6]	G	A	3.395e^-4	0.789	UTR_3_PRIME CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	2884215	X_2884215_SNP [dm3] X_2990182_SNP [dm6]	G	C	3.407e^-4	0.789	INTRON kirre	TF binding site BDTNP1_TFBS_z
2R	12169346	2R_12169346_SNP [dm3] 2R_16281841_SNP [dm6]	G	A	3.416e^-4	0.789	SYNONYMOUS_CODING CG7755 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8526919	3R_8526919_SNP [dm3] 3R_12701197_SNP [dm6]	C	T	3.416e^-4	0.789	INTRON Past1
3L	4356729	3L_4356729_SNP [dm3] 3L_4356729_SNP [dm6]	C	T	3.417e^-4	0.789	INTRON Cip4
2R	17861139	2R_17861139_SNP [dm3] 2R_21973634_SNP [dm6]	T	C	3.418e^-4	0.789	SYNONYMOUS_CODING CG9304	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14553760	2R_14553760_SNP [dm3] 2R_18666255_SNP [dm6]	T	G	3.422e^-4	0.789	UPSTREAM CG33136 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16056868	2R_16056868_SNP [dm3] 2R_20169363_SNP [dm6]	T	C	3.426e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10930566	2L_10930566_SNP [dm3] 2L_10930566_SNP [dm6]	G	T	3.428e^-4	0.789	INTRON dpr2
2L	1138169	2L_1138169_SNP [dm3] 2L_1138169_SNP [dm6]	G	C	3.438e^-4	0.789	INTRON CG4577
3L	7071422	3L_7071422_SNP [dm3] 3L_7078322_SNP [dm6]	G	A	3.438e^-4	0.789	UPSTREAM CG8641 INTERGENIC
3R	5689018	3R_5689018_SNP [dm3] 3R_9863296_SNP [dm6]	G	T	3.439e^-4	0.789	INTRON Teh1
2R	10860664	2R_10860664_SNP [dm3] 2R_14973159_SNP [dm6]	T	C	3.440e^-4	0.789	INTRON ckn
2L	1673302	2L_1673302_SNP [dm3] 2L_1673302_SNP [dm6]	T	A	3.444e^-4	0.789	INTRON chinmo
3L	18307821	3L_18307821_INS [dm3] 3L_18314721_INS [dm6]	T	TCC	3.446e^-4	0.789	INTERGENIC
3R	3226534	3R_3226534_SNP [dm3] 3R_7400812_SNP [dm6]	T	A	3.450e^-4	0.789	INTERGENIC
2R	19962641	2R_19962641_SNP [dm3] 2R_24075118_SNP [dm6]	G	A	3.452e^-4	0.789	UPSTREAM Mlp60A INTRON Mlp60A
3R	17938152	3R_17938152_SNP [dm3] 3R_22112430_SNP [dm6]	C	T	3.459e^-4	0.789	UPSTREAM Ir94a INTERGENIC
3L	2020857	3L_2020857_SNP [dm3] 3L_2020857_SNP [dm6]	G	C	3.459e^-4	0.789	NON_SYNONYMOUS_CODING CG42357
3R	14458146	3R_14458146_SNP [dm3] 3R_18632424_SNP [dm6]	A	G	3.464e^-4	0.789	INTRON qin & 1 other
X	7645471	X_7645471_SNP [dm3] X_7751438_SNP [dm6]	C	A	3.468e^-4	0.789	INTERGENIC
3L	2574477	3L_2574477_SNP [dm3] 3L_2574477_SNP [dm6]	A	G	3.473e^-4	0.789	INTRON msn
3R	20241331	3R_20241331_SNP [dm3] 3R_24415609_SNP [dm6]	A	T	3.474e^-4	0.789	INTRON nAChRalpha1
3L	11175829	3L_11175829_SNP [dm3] 3L_11182729_SNP [dm6]	A	G	3.481e^-4	0.789	INTRON GlcAT-P
3L	15328306	3L_15328306_SNP [dm3] 3L_15335206_SNP [dm6]	C	T	3.484e^-4	0.789	INTRON CR43992
2R	18594060	2R_18594060_SNP [dm3] 2R_22706555_SNP [dm6]	C	T	3.485e^-4	0.789	NON_SYNONYMOUS_CODING Obp58c UPSTREAM Obp58d DOWNSTREAM Obp58b	TF binding site mE1_TFBS_inv
X	3263345	X_3263345_SNP [dm3] X_3369312_SNP [dm6]	T	C	3.487e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	23675511	3R_23675511_SNP [dm3] 3R_27849789_SNP [dm6]	A	G	3.495e^-4	0.789	INTRON CG34353
2R	9014519	2R_9014519_SNP [dm3] 2R_13127014_SNP [dm6]	T	C	3.500e^-4	0.789	DOWNSTREAM CG13325 & 1 other INTERGENIC
2R	9014523	2R_9014523_SNP [dm3] 2R_13127018_SNP [dm6]	G	A	3.500e^-4	0.789	DOWNSTREAM CG3955 INTERGENIC
2R	10830155	2R_10830155_INS [dm3] 2R_14942650_INS [dm6]	G	GC	3.512e^-4	0.791	UTR_5_PRIME CG10257
3R	14346189	3R_14346189_SNP [dm3] 3R_18520467_SNP [dm6]	G	T	3.522e^-4	0.792	INTRON fru
X	7885572	X_7885572_SNP [dm3] X_7991539_SNP [dm6]	C	G	3.530e^-4	0.792	INTERGENIC
3L	15283868	3L_15283868_SNP [dm3] 3L_15290768_SNP [dm6]	G	T	3.534e^-4	0.792	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	15087076	2R_15087076_DEL [dm3] 2R_19199571_DEL [dm6]	AA	A	3.539e^-4	0.792	INTRON hppy
3L	4303870	3L_4303870_SNP [dm3] 3L_4303870_SNP [dm6]	T	C	3.539e^-4	0.792	INTRON dyl
2L	1239576	2L_1239576_SNP [dm3] 2L_1239576_SNP [dm6]	A	T	3.547e^-4	0.793	UPSTREAM CG5397 INTERGENIC
X	5814297	X_5814297_SNP [dm3] X_5920264_SNP [dm6]	G	A	3.555e^-4	0.794	INTRON CG3726
3L	17494940	3L_17494940_SNP [dm3] 3L_17501840_SNP [dm6]	C	T	3.562e^-4	0.794	INTRON Oatp74D	TF binding site mE1_TFBS_HSA
3R	25492464	3R_25492464_SNP [dm3] 3R_29666742_SNP [dm6]	A	G	3.579e^-4	0.796	NON_SYNONYMOUS_CODING ppk21 DOWNSTREAM ppk20	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6533964	2R_6533964_SNP [dm3] 2R_10646459_SNP [dm6]	A	G	3.580e^-4	0.796	NON_SYNONYMOUS_CODING Elp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_sens
2L	9458047	2L_9458047_SNP [dm3] 2L_9458047_SNP [dm6]	G	A	3.582e^-4	0.796	INTRON numb
2R	19114858	2R_19114858_SNP [dm3] 2R_23227335_SNP [dm6]	A	C	3.591e^-4	0.797	INTERGENIC
3L	2382329	3L_2382329_SNP [dm3] 3L_2382329_SNP [dm6]	G	A	3.604e^-4	0.799	INTRON CG45186	TF binding site mE1_TFBS_sens
2R	14324363	2R_14324363_SNP [dm3] 2R_18436858_SNP [dm6]	C	G	3.614e^-4	0.8	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	17760484	2L_17760484_SNP [dm3] 2L_17760484_SNP [dm6]	T	C	3.623e^-4	0.8	INTRON CadN
3L	15858147	3L_15858147_SNP [dm3] 3L_15865047_SNP [dm6]	C	A	3.632e^-4	0.8	INTRON pHCl
3R	20995863	3R_20995863_SNP [dm3] 3R_25170141_SNP [dm6]	A	G	3.636e^-4	0.8	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20995865	3R_20995865_SNP [dm3] 3R_25170143_SNP [dm6]	C	T	3.636e^-4	0.8	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8253189	2L_8253189_SNP [dm3] 2L_8253189_SNP [dm6]	G	T	3.636e^-4	0.8	UPSTREAM CG8086 INTRON CG8086
3R	22251150	3R_22251150_SNP [dm3] 3R_26425428_SNP [dm6]	G	A	3.636e^-4	0.8	SYNONYMOUS_CODING CG34291 UPSTREAM CG6503 EXON CR31084
2L	4380186	2L_4380186_SNP [dm3] 2L_4380186_SNP [dm6]	G	A	3.651e^-4	0.8	UTR_3_PRIME Traf4 DOWNSTREAM CG17612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6263625	2L_6263625_SNP [dm3] 2L_6263625_SNP [dm6]	A	G	3.656e^-4	0.8	UTR_3_PRIME CG13983 INTRON Ddr	TF binding site mE1_TFBS_chinmo
3L	13492047	3L_13492047_SNP [dm3] 3L_13498947_SNP [dm6]	G	T	3.659e^-4	0.8	INTRON Tgi
2R	9086153	2R_9086153_SNP [dm3] 2R_13198648_SNP [dm6]	A	T	3.666e^-4	0.8	UPSTREAM Aats-val & 1 other INTERGENIC
3L	12810427	3L_12810427_SNP [dm3] 3L_12817327_SNP [dm6]	C	A	3.675e^-4	0.8	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17960348	2R_17960348_SNP [dm3] 2R_22072843_SNP [dm6]	C	T	3.681e^-4	0.8	NON_SYNONYMOUS_CODING CG11474 DOWNSTREAM CG2921
2L	4803869	2L_4803869_SNP [dm3] 2L_4803869_SNP [dm6]	T	C	3.688e^-4	0.8	INTERGENIC
2L	17761413	2L_17761413_SNP [dm3] 2L_17761413_SNP [dm6]	A	T	3.689e^-4	0.8	INTRON CadN
X	14986213	X_14986213_INS [dm3] X_15092180_INS [dm6]	G	GAACTG	3.692e^-4	0.8	INTRON Rab3-GEF
3L	4409093	3L_4409093_INS [dm3] 3L_4409093_INS [dm6]	G	GCATTGC	3.696e^-4	0.8	INTRON DOR	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	2240209	X_2240209_SNP [dm3] X_2346176_SNP [dm6]	C	A	3.697e^-4	0.8	SYNONYMOUS_CODING ptr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16402958	2L_16402958_SNP [dm3] 2L_16402958_SNP [dm6]	A	C	3.697e^-4	0.8	INTRON CG5888
2R	17960444	2R_17960444_SNP [dm3] 2R_22072939_SNP [dm6]	T	G	3.698e^-4	0.8	DOWNSTREAM CG2921 INTRON CG11474
3L	13973602	3L_13973602_SNP [dm3] 3L_13980502_SNP [dm6]	A	G	3.700e^-4	0.8	DOWNSTREAM CG17364 INTRON CG17364	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24061603	3R_24061603_SNP [dm3] 3R_28235881_SNP [dm6]	C	T	3.705e^-4	0.8	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3R	24199745	3R_24199745_SNP [dm3] 3R_28374023_SNP [dm6]	T	A	3.706e^-4	0.8	INTERGENIC
2R	14317521	2R_14317521_SNP [dm3] 2R_18430016_SNP [dm6]	C	A	3.735e^-4	0.802	NON_SYNONYMOUS_CODING CG12263 DOWNSTREAM CG30118	TF binding site mE1_TFBS_cad
3L	5753828	3L_5753828_SNP [dm3] 3L_5760728_SNP [dm6]	T	C	3.740e^-4	0.802	SYNONYMOUS_CODING Ubp64E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13798036	2R_13798036_SNP [dm3] 2R_17910531_SNP [dm6]	G	T	3.745e^-4	0.802	INTRON Elk
2L	17500800	2L_17500800_SNP [dm3] 2L_17500800_SNP [dm6]	G	A	3.746e^-4	0.802	START_GAINED CG6412 UTR_5_PRIME CG6412 UPSTREAM Dhc36C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	2544565	2L_2544565_DEL [dm3] 2L_2544565_DEL [dm6]	AA	A	3.749e^-4	0.802	INTERGENIC
2L	4475498	2L_4475498_SNP [dm3] 2L_4475498_SNP [dm6]	T	C	3.757e^-4	0.802	INTRON ine
3L	18447525	3L_18447525_SNP [dm3] 3L_18454425_SNP [dm6]	A	G	3.764e^-4	0.802	INTERGENIC
3L	3500902	3L_3500902_SNP [dm3] 3L_3500902_SNP [dm6]	G	T	3.766e^-4	0.802	INTRON CG42324
2R	16148004	2R_16148004_SNP [dm3] 2R_20260499_SNP [dm6]	C	T	3.766e^-4	0.802	SYNONYMOUS_CODING Hsl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15659067	3L_15659067_SNP [dm3] 3L_15665967_SNP [dm6]	G	T	3.769e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11410614	3L_11410614_SNP [dm3] 3L_11417514_SNP [dm6]	G	C	3.769e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16044733	3L_16044733_SNP [dm3] 3L_16051633_SNP [dm6]	G	A	3.777e^-4	0.802	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sbb mE1_TFBS_Trl mE1_TFBS_zfh1
X	17299176	X_17299176_SNP [dm3] X_17405143_SNP [dm6]	T	C	3.780e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	376315	4_376315_SNP [dm3] 4_355689_SNP [dm6]	G	A	3.782e^-4	0.802	INTRON PMCA
X	21295547	X_21295547_SNP [dm3] X_21424520_SNP [dm6]	C	T	3.786e^-4	0.802	UTR_3_PRIME CG42343	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17960354	2R_17960354_SNP [dm3] 2R_22072849_SNP [dm6]	G	A	3.786e^-4	0.802	SYNONYMOUS_CODING CG11474 DOWNSTREAM CG2921
2L	22113946	2L_22113946_SNP [dm3] 2L_22113946_SNP [dm6]	C	A	3.793e^-4	0.802	INTERGENIC	transposable element FlyBase
3L	11364139	3L_11364139_SNP [dm3] 3L_11371039_SNP [dm6]	G	A	3.797e^-4	0.802	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12170265	2R_12170265_SNP [dm3] 2R_16282760_SNP [dm6]	T	C	3.797e^-4	0.802	SYNONYMOUS_CODING CG7755 UPSTREAM CG9068	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18938044	2R_18938044_SNP [dm3] 2R_23050521_SNP [dm6]	T	A	3.817e^-4	0.803	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2020566	3L_2020566_SNP [dm3] 3L_2020566_SNP [dm6]	G	A	3.822e^-4	0.803	SYNONYMOUS_CODING CG42357
3L	1421237	3L_1421237_SNP [dm3] 3L_1421237_SNP [dm6]	G	A	3.823e^-4	0.803	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad
3R	10625608	3R_10625608_SNP [dm3] 3R_14799886_SNP [dm6]	G	C	3.826e^-4	0.803	NON_SYNONYMOUS_CODING CG14856
2R	14334962	2R_14334962_SNP [dm3] 2R_18447457_SNP [dm6]	A	T	3.829e^-4	0.803	UTR_5_PRIME CG30120 UTR_3_PRIME CG5189 & 1 other DOWNSTREAM CG5189
2R	17960349	2R_17960349_SNP [dm3] 2R_22072844_SNP [dm6]	C	T	3.832e^-4	0.803	SYNONYMOUS_CODING CG11474 DOWNSTREAM CG2921
2L	4811079	2L_4811079_SNP [dm3] 2L_4811079_SNP [dm6]	A	C	3.833e^-4	0.803	DOWNSTREAM CR45297 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	19982409	2L_19982409_SNP [dm3] 2L_19982409_SNP [dm6]	G	A	3.840e^-4	0.803	INTRON CG43861
3R	23872629	3R_23872629_SNP [dm3] 3R_28046907_SNP [dm6]	A	G	3.841e^-4	0.803	UPSTREAM CG34362 INTRON CG34362
2R	19687387	2R_19687387_SNP [dm3] 2R_23799864_SNP [dm6]	T	A	3.845e^-4	0.803	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17937669	2R_17937669_SNP [dm3] 2R_22050164_SNP [dm6]	C	A	3.857e^-4	0.803	INTERGENIC
X	6424753	X_6424753_SNP [dm3] X_6530720_SNP [dm6]	G	C	3.860e^-4	0.803	UTR_3_PRIME Spat DOWNSTREAM RpL7A & 1 other	TF binding site mE1_TFBS_cad
2R	10858610	2R_10858610_DEL [dm3] 2R_14971105_DEL [dm6]	TT	T	3.872e^-4	0.803	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19131588	2R_19131588_SNP [dm3] 2R_23244065_SNP [dm6]	G	A	3.885e^-4	0.803	UTR_3_PRIME yip3
3L	2020709	3L_2020709_SNP [dm3] 3L_2020709_SNP [dm6]	A	G	3.887e^-4	0.803	NON_SYNONYMOUS_CODING CG42357
3R	9610845	3R_9610845_SNP [dm3] 3R_13785123_SNP [dm6]	C	T	3.892e^-4	0.803	SYNONYMOUS_CODING Dip-B DOWNSTREAM CR45590	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	7764344	3R_7764344_SNP [dm3] 3R_11938622_SNP [dm6]	A	G	3.898e^-4	0.803	INTRON Cad87A
3L	9883631	3L_9883631_SNP [dm3] 3L_9890531_SNP [dm6]	T	C	3.900e^-4	0.803	SYNONYMOUS_CODING CalpB	TF binding site mE1_TFBS_chinmo
3L	11186650	3L_11186650_SNP [dm3] 3L_11193550_SNP [dm6]	C	T	3.900e^-4	0.803	INTRON GlcAT-P
2L	2496870	2L_2496870_SNP [dm3] 2L_2496870_SNP [dm6]	C	G	3.902e^-4	0.803	NON_SYNONYMOUS_CODING oaf UTR_3_PRIME oaf	TF binding site mE1_TFBS_chinmo
2R	6254614	2R_6254614_SNP [dm3] 2R_10367109_SNP [dm6]	T	C	3.905e^-4	0.803	INTRON CG42732
3L	19972246	3L_19972246_SNP [dm3] 3L_19979146_SNP [dm6]	T	A	3.908e^-4	0.803	UTR_3_PRIME CG14182	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13973330	3L_13973330_SNP [dm3] 3L_13980230_SNP [dm6]	G	T	3.916e^-4	0.803	DOWNSTREAM CG17364 INTRON CG17364	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4768404	3L_4768404_SNP [dm3] 3L_4768404_SNP [dm6]	G	T	3.919e^-4	0.803	INTRON RhoGEF64C
3L	7088208	3L_7088208_SNP [dm3] 3L_7095108_SNP [dm6]	C	A	3.923e^-4	0.803	UTR_5_PRIME form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25773846	3R_25773846_SNP [dm3] 3R_29948124_SNP [dm6]	A	G	3.924e^-4	0.803	SYNONYMOUS_CODING CG15523
X	17297934	X_17297934_SNP [dm3] X_17403901_SNP [dm6]	T	G	3.924e^-4	0.803	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	4312206	2L_4312206_SNP [dm3] 2L_4312206_SNP [dm6]	A	G	3.926e^-4	0.803	INTRON tutl
2R	11770808	2R_11770808_SNP [dm3] 2R_15883303_SNP [dm6]	A	C	3.930e^-4	0.803	INTRON sli
2L	2376657	2L_2376657_SNP [dm3] 2L_2376657_SNP [dm6]	G	T	3.932e^-4	0.803	UTR_5_PRIME Atxn7 DOWNSTREAM CG15390 INTRON Atxn7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	11186938	3L_11186938_SNP [dm3] 3L_11193838_SNP [dm6]	T	A	3.933e^-4	0.803	INTRON GlcAT-P
3L	15284729	3L_15284729_SNP [dm3] 3L_15291629_SNP [dm6]	C	G	3.940e^-4	0.803	INTERGENIC
3R	16324293	3R_16324293_SNP [dm3] 3R_20498571_SNP [dm6]	T	G	3.940e^-4	0.803	INTERGENIC
2R	18870961	2R_18870961_SNP [dm3] 2R_22983438_SNP [dm6]	T	G	3.947e^-4	0.803	NON_SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10793808	3L_10793808_SNP [dm3] 3L_10800708_SNP [dm6]	A	C	3.951e^-4	0.803	UPSTREAM CG12523 INTERGENIC
3L	4586991	3L_4586991_SNP [dm3] 3L_4586991_SNP [dm6]	G	A	3.963e^-4	0.803	INTRON CG42540
3L	4587043	3L_4587043_DEL [dm3] 3L_4587043_DEL [dm6]	AA	A	3.963e^-4	0.803	INTRON CG42540
3L	4587053	3L_4587053_DEL [dm3] 3L_4587053_DEL [dm6]	GCTGTTTCCAACT...	G	3.963e^-4	0.803	INTRON CG42540
2L	2375899	2L_2375899_SNP [dm3] 2L_2375899_SNP [dm6]	C	T	3.974e^-4	0.804	UTR_5_PRIME Atxn7 UPSTREAM Atxn7 & 1 other DOWNSTREAM CG15390	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	13430049	3L_13430049_SNP [dm3] 3L_13436949_SNP [dm6]	T	C	3.976e^-4	0.804	SYNONYMOUS_CODING CG10154
3L	11911286	3L_11911286_SNP [dm3] 3L_11918186_SNP [dm6]	G	A	3.982e^-4	0.804	INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	9540574	3L_9540574_INS [dm3] 3L_9547474_INS [dm6]	T	CCCCC	3.986e^-4	0.804	UTR_5_PRIME CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	12594183	2L_12594183_SNP [dm3] 2L_12594183_SNP [dm6]	C	T	3.990e^-4	0.804	SYNONYMOUS_CODING nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14084655	3R_14084655_SNP [dm3] 3R_18258933_SNP [dm6]	A	G	3.998e^-4	0.804	INTERGENIC
3L	4407714	3L_4407714_SNP [dm3] 3L_4407714_SNP [dm6]	C	T	4.000e^-4	0.804	INTRON DOR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	8998489	3R_8998489_SNP [dm3] 3R_13172767_SNP [dm6]	A	C	4.004e^-4	0.804	INTERGENIC
3L	2902653	3L_2902653_SNP [dm3] 3L_2902653_SNP [dm6]	A	G	4.008e^-4	0.804	INTRON Shab
2R	16277586	2R_16277586_SNP [dm3] 2R_20390081_SNP [dm6]	T	C	4.013e^-4	0.804	INTERGENIC
2L	11054065	2L_11054065_SNP [dm3] 2L_11054065_SNP [dm6]	A	T	4.017e^-4	0.804	INTRON Samuel
3R	5021137	3R_5021137_SNP [dm3] 3R_9195415_SNP [dm6]	C	A	4.018e^-4	0.804	INTRON pum
2R	13799062	2R_13799062_MNP [dm3] 2R_17911557_MNP [dm6]	AGT	GAA	4.030e^-4	0.804	INTRON Elk
3L	15147003	3L_15147003_SNP [dm3] 3L_15153903_SNP [dm6]	G	A	4.038e^-4	0.804	UTR_3_PRIME FucTA DOWNSTREAM Msh6
3L	7035208	3L_7035208_SNP [dm3] 3L_7042108_SNP [dm6]	T	G	4.045e^-4	0.804	INTRON Mp
3L	10611641	3L_10611641_SNP [dm3] 3L_10618541_SNP [dm6]	G	T	4.048e^-4	0.804	INTERGENIC
2L	17761142	2L_17761142_SNP [dm3] 2L_17761142_SNP [dm6]	G	A	4.048e^-4	0.804	INTRON CadN
X	17294819	X_17294819_SNP [dm3] X_17400786_SNP [dm6]	A	G	4.055e^-4	0.804	INTRON B-H1
2R	16250061	2R_16250061_SNP [dm3] 2R_20362556_SNP [dm6]	T	C	4.063e^-4	0.804	INTERGENIC
3L	11461658	3L_11461658_SNP [dm3] 3L_11468558_SNP [dm6]	G	A	4.077e^-4	0.804	INTERGENIC
2R	14969728	2R_14969728_SNP [dm3] 2R_19082223_SNP [dm6]	A	G	4.082e^-4	0.804	INTRON 5-HT1A
X	7875676	X_7875676_SNP [dm3] X_7981643_SNP [dm6]	C	T	4.084e^-4	0.804	INTRON sn
3L	4488936	3L_4488936_SNP [dm3] 3L_4488936_SNP [dm6]	C	T	4.084e^-4	0.804	INTRON CG13722
X	17297889	X_17297889_SNP [dm3] X_17403856_SNP [dm6]	A	G	4.084e^-4	0.804	DOWNSTREAM B-H1 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	15283877	3L_15283877_SNP [dm3] 3L_15290777_SNP [dm6]	T	G	4.085e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8699389	2R_8699389_SNP [dm3] 2R_12811884_SNP [dm6]	C	T	4.087e^-4	0.804	INTERGENIC
3R	25618488	3R_25618488_SNP [dm3] 3R_29792766_SNP [dm6]	T	C	4.090e^-4	0.804	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_chinmo
3L	15279164	3L_15279164_SNP [dm3] 3L_15286064_SNP [dm6]	C	G	4.090e^-4	0.804	INTERGENIC
3R	23357935	3R_23357935_SNP [dm3] 3R_27532213_SNP [dm6]	G	A	4.097e^-4	0.804	NON_SYNONYMOUS_CODING CG12885	TF binding site mE1_TFBS_chinmo
3L	16488673	3L_16488673_SNP [dm3] 3L_16495573_SNP [dm6]	T	A	4.104e^-4	0.804	UPSTREAM CG42514 INTRON CG33158 & 2 others	TF binding site mE1_TFBS_Trl
X	6723503	X_6723503_SNP [dm3] X_6829470_SNP [dm6]	C	A	4.116e^-4	0.804	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
3R	24082014	3R_24082014_SNP [dm3] 3R_28256292_SNP [dm6]	G	T	4.118e^-4	0.804	INTERGENIC
3L	15323353	3L_15323353_SNP [dm3] 3L_15330253_SNP [dm6]	G	A	4.124e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10866266	2R_10866266_SNP [dm3] 2R_14978761_SNP [dm6]	G	C	4.129e^-4	0.804	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24776135	3R_24776135_SNP [dm3] 3R_28950413_SNP [dm6]	C	T	4.129e^-4	0.804	INTRON CG14521
3L	10793797	3L_10793797_SNP [dm3] 3L_10800697_SNP [dm6]	A	G	4.133e^-4	0.804	UPSTREAM CG12523 INTERGENIC
3L	11184055	3L_11184055_SNP [dm3] 3L_11190955_SNP [dm6]	A	T	4.134e^-4	0.804	INTRON GlcAT-P
2R	9768204	2R_9768204_SNP [dm3] 2R_13880699_SNP [dm6]	G	A	4.137e^-4	0.804	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2R	11586358	2R_11586358_SNP [dm3] 2R_15698853_SNP [dm6]	C	T	4.138e^-4	0.804	UTR_3_PRIME CG42662 & 1 other DOWNSTREAM CG33462	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	13944581	3L_13944581_SNP [dm3] 3L_13951481_SNP [dm6]	C	T	4.144e^-4	0.805	INTRON CG32137
3R	25139066	3R_25139066_INS [dm3] 3R_29313344_INS [dm6]	A	AA	4.157e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15849259	3L_15849259_SNP [dm3] 3L_15856159_SNP [dm6]	T	C	4.158e^-4	0.805	SYNONYMOUS_CODING pHCl INTRON pHCl
3L	4586997	3L_4586997_DEL [dm3] 3L_4586997_DEL [dm6]	CT	A	4.165e^-4	0.805	INTRON CG42540
3L	14204478	3L_14204478_SNP [dm3] 3L_14211378_SNP [dm6]	G	A	4.175e^-4	0.805	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	19189511	3R_19189511_SNP [dm3] 3R_23363789_SNP [dm6]	G	A	4.179e^-4	0.805	UPSTREAM CG4408 INTERGENIC
2R	10865359	2R_10865359_SNP [dm3] 2R_14977854_SNP [dm6]	C	T	4.182e^-4	0.805	SYNONYMOUS_CODING ckn INTRON ckn
3L	4587029	3L_4587029_SNP [dm3] 3L_4587029_SNP [dm6]	T	C	4.185e^-4	0.805	INTRON CG42540
2L	1679018	2L_1679018_SNP [dm3] 2L_1679018_SNP [dm6]	T	C	4.186e^-4	0.805	INTRON chinmo
2R	10463650	2R_10463650_SNP [dm3] 2R_14576145_SNP [dm6]	A	G	4.192e^-4	0.805	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10463687	2R_10463687_SNP [dm3] 2R_14576182_SNP [dm6]	G	A	4.192e^-4	0.805	UPSTREAM LamC INTRON ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14206968	3L_14206968_DEL [dm3] 3L_14213868_DEL [dm6]	AA	A	4.203e^-4	0.805	INTRON nuf
3L	14206982	3L_14206982_SNP [dm3] 3L_14213882_SNP [dm6]	C	T	4.203e^-4	0.805	INTRON nuf
3R	5853576	3R_5853576_SNP [dm3] 3R_10027854_SNP [dm6]	A	G	4.203e^-4	0.805	INTRON Mical
2L	10888749	2L_10888749_SNP [dm3] 2L_10888749_SNP [dm6]	A	G	4.210e^-4	0.806	SYNONYMOUS_CODING CG14071
X	19752154	X_19752154_SNP [dm3] X_19858121_SNP [dm6]	T	C	4.213e^-4	0.806	SYNONYMOUS_CODING Nup205	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11862260	2R_11862260_SNP [dm3] 2R_15974755_SNP [dm6]	T	C	4.219e^-4	0.806	NON_SYNONYMOUS_CODING Strn-Mlck
3L	11187384	3L_11187384_SNP [dm3] 3L_11194284_SNP [dm6]	A	G	4.226e^-4	0.806	INTRON GlcAT-P
3L	4408984	3L_4408984_SNP [dm3] 3L_4408984_SNP [dm6]	G	T	4.229e^-4	0.806	INTRON DOR	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	11531098	3R_11531098_INS [dm3] 3R_15705376_INS [dm6]	T	TTTCCATCTTT...	4.238e^-4	0.807	INTRON CG5404
3L	15283792	3L_15283792_SNP [dm3] 3L_15290692_SNP [dm6]	G	C	4.242e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4409530	3L_4409530_SNP [dm3] 3L_4409530_SNP [dm6]	G	C	4.256e^-4	0.807	INTRON DOR	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6223430	2R_6223430_SNP [dm3] 2R_10335925_SNP [dm6]	G	T	4.261e^-4	0.807	INTRON CG42732
3L	12721761	3L_12721761_SNP [dm3] 3L_12728661_SNP [dm6]	A	G	4.266e^-4	0.807	INTERGENIC
3R	26523299	3R_26523299_SNP [dm3] 3R_30697577_SNP [dm6]	T	C	4.271e^-4	0.807	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16211920	3L_16211920_SNP [dm3] 3L_16218820_SNP [dm6]	C	A	4.275e^-4	0.807	INTERGENIC
3L	4408942	3L_4408942_SNP [dm3] 3L_4408942_SNP [dm6]	T	A	4.278e^-4	0.807	INTRON DOR	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11426710	3L_11426710_SNP [dm3] 3L_11433610_SNP [dm6]	G	A	4.283e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	6919209	3L_6919209_SNP [dm3] 3L_6926109_SNP [dm6]	C	T	4.289e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20344021	X_20344021_SNP [dm3] X_20472994_SNP [dm6]	T	A	4.290e^-4	0.807	NON_SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_chinmo
3L	5601272	3L_5601272_SNP [dm3] 3L_5608172_SNP [dm6]	G	C	4.303e^-4	0.807	NON_SYNONYMOUS_CODING Eaf6 DOWNSTREAM mthl2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
X	7885637	X_7885637_SNP [dm3] X_7991604_SNP [dm6]	A	C	4.307e^-4	0.807	INTERGENIC
3L	3618487	3L_3618487_SNP [dm3] 3L_3618487_SNP [dm6]	A	C	4.313e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13797986	2R_13797986_SNP [dm3] 2R_17910481_SNP [dm6]	A	G	4.314e^-4	0.807	INTRON Elk
2R	18938068	2R_18938068_SNP [dm3] 2R_23050545_SNP [dm6]	T	A	4.314e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Sema-5cBG2386/DGRP phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results