DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.243e^-8)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.03518
In_2L_t	0.07011
In_3R_K	2.493e-15

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.912	0.0858

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2045 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16921446	3L_16921446_SNP [dm3] 3L_16928346_SNP [dm6]	T	A	2.445e^-6	0.802	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16391977	2L_16391977_SNP [dm3] 2L_16391977_SNP [dm6]	C	T	2.797e^-6	0.802	INTERGENIC
2R	4171166	2R_4171166_INS [dm3] 2R_8283661_INS [dm6]	C	CCTTTCCGC	3.930e^-6	0.802	INTERGENIC
3R	8388339	3R_8388339_INS [dm3] 3R_12562617_INS [dm6]	C	CA	4.383e^-6	0.802	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2R	9411448	2R_9411448_SNP [dm3] 2R_13523943_SNP [dm6]	A	G	4.903e^-6	0.802	DOWNSTREAM CG13331 INTRON Vmat
2R	4328782	2R_4328782_SNP [dm3] 2R_8441277_SNP [dm6]	G	A	5.732e^-6	0.802	UPSTREAM Cyp4ad1 INTRON Cyp4ad1
3R	12502464	3R_12502464_SNP [dm3] 3R_16676742_SNP [dm6]	T	C	5.872e^-6	0.802	INTRON Ubx	TF binding site mE1_TFBS_cad
2R	7514709	2R_7514709_SNP [dm3] 2R_11627204_SNP [dm6]	A	C	6.914e^-6	0.802	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	11649434	3L_11649434_SNP [dm3] 3L_11656334_SNP [dm6]	T	G	7.040e^-6	0.802	UPSTREAM mir-274 INTRON CG32085
X	5889450	X_5889450_SNP [dm3] X_5995417_SNP [dm6]	A	G	9.193e^-6	0.802	INTERGENIC
2L	6554945	2L_6554945_SNP [dm3] 2L_6554945_SNP [dm6]	T	C	9.798e^-6	0.802	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10873786	3L_10873786_SNP [dm3] 3L_10880686_SNP [dm6]	G	A	1.016e^-5	0.802	DOWNSTREAM CG6409 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7514673	2R_7514673_SNP [dm3] 2R_11627168_SNP [dm6]	T	G	1.040e^-5	0.802	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	13096277	3L_13096277_SNP [dm3] 3L_13103177_SNP [dm6]	A	C	1.057e^-5	0.802	INTERGENIC
X	19573525	X_19573525_SNP [dm3] X_19679492_SNP [dm6]	G	A	1.095e^-5	0.802	INTRON dome
3L	17226287	3L_17226287_DEL [dm3] 3L_17233187_DEL [dm6]	TTCTCAAAAT	T	1.107e^-5	0.802	INTRON Rbp6
3L	10896539	3L_10896539_SNP [dm3] 3L_10903439_SNP [dm6]	A	G	1.124e^-5	0.802	INTERGENIC
2R	16966430	2R_16966430_SNP [dm3] 2R_21078925_SNP [dm6]	C	T	1.171e^-5	0.802	INTRON Treh
3R	4038473	3R_4038473_SNP [dm3] 3R_8212751_SNP [dm6]	C	T	1.236e^-5	0.802	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7514674	2R_7514674_SNP [dm3] 2R_11627169_SNP [dm6]	G	C	1.285e^-5	0.802	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	11936463	3R_11936463_SNP [dm3] 3R_16110741_SNP [dm6]	G	C	1.292e^-5	0.802	INTERGENIC
2R	2587010	2R_2587010_SNP [dm3] 2R_6699505_SNP [dm6]	T	G	1.296e^-5	0.802	DOWNSTREAM CG3409 & 2 others INTERGENIC
3R	4053443	3R_4053443_SNP [dm3] 3R_8227721_SNP [dm6]	G	C	1.305e^-5	0.802	UPSTREAM CR45550 EXON CR45551
3L	21198647	3L_21198647_SNP [dm3] 3L_21205547_SNP [dm6]	A	C	1.356e^-5	0.802	UPSTREAM CG10512 INTRON CG10512	TF binding site mE1_TFBS_cad
2R	3736084	2R_3736084_SNP [dm3] 2R_7848579_SNP [dm6]	G	A	1.390e^-5	0.802	INTRON Dgk
3R	11936481	3R_11936481_DEL [dm3] 3R_16110759_DEL [dm6]	TGGTAT	T	1.419e^-5	0.802	INTERGENIC
2L	15125265	2L_15125265_SNP [dm3] 2L_15125265_SNP [dm6]	A	G	1.479e^-5	0.802	INTERGENIC
2L	11823157	2L_11823157_SNP [dm3] 2L_11823157_SNP [dm6]	G	C	1.485e^-5	0.802	INTRON Pde1c
3R	16411404	3R_16411404_SNP [dm3] 3R_20585682_SNP [dm6]	C	G	1.525e^-5	0.802	UTR_5_PRIME CG16953 DOWNSTREAM Sep2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	7514656	2R_7514656_SNP [dm3] 2R_11627151_SNP [dm6]	C	A	1.559e^-5	0.802	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13790164	3R_13790164_SNP [dm3] 3R_17964442_SNP [dm6]	T	A	1.636e^-5	0.802	INTRON cpo
3R	11936519	3R_11936519_SNP [dm3] 3R_16110797_SNP [dm6]	T	C	1.674e^-5	0.802	INTERGENIC
3L	10898012	3L_10898012_SNP [dm3] 3L_10904912_SNP [dm6]	G	A	1.692e^-5	0.802	INTERGENIC
2R	15586077	2R_15586077_SNP [dm3] 2R_19698572_SNP [dm6]	T	G	1.795e^-5	0.802	DOWNSTREAM Obp56b & 1 other INTERGENIC
3L	1769452	3L_1769452_SNP [dm3] 3L_1769452_SNP [dm6]	A	C	1.883e^-5	0.802	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad
3R	26122939	3R_26122939_SNP [dm3] 3R_30297217_SNP [dm6]	T	C	1.930e^-5	0.802	INTRON hdc	TF binding site mE1_TFBS_inv
3L	11649446	3L_11649446_SNP [dm3] 3L_11656346_SNP [dm6]	C	A	1.957e^-5	0.802	UPSTREAM mir-274 INTRON CG32085
X	9264454	X_9264454_SNP [dm3] X_9370421_SNP [dm6]	G	A	1.982e^-5	0.802	SYNONYMOUS_CODING mgl	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	17932013	2L_17932013_SNP [dm3] 2L_17932013_SNP [dm6]	C	T	2.048e^-5	0.802	INTERGENIC
2R	6460832	2R_6460832_SNP [dm3] 2R_10573327_SNP [dm6]	G	A	2.071e^-5	0.802	INTRON psq
2R	8231748	2R_8231748_SNP [dm3] 2R_12344243_SNP [dm6]	G	T	2.107e^-5	0.802	UPSTREAM ana3 INTRON CG8839	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	26122931	3R_26122931_SNP [dm3] 3R_30297209_SNP [dm6]	C	A	2.121e^-5	0.802	INTRON hdc	TF binding site mE1_TFBS_inv
2R	3735725	2R_3735725_SNP [dm3] 2R_7848220_SNP [dm6]	G	A	2.122e^-5	0.802	UPSTREAM Dgk INTRON Dgk
2L	18173806	2L_18173806_SNP [dm3] 2L_18173806_SNP [dm6]	C	A	2.180e^-5	0.802	INTRON CG42750
3R	11936475	3R_11936475_SNP [dm3] 3R_16110753_SNP [dm6]	A	C	2.292e^-5	0.802	INTERGENIC
3R	18831372	3R_18831372_SNP [dm3] 3R_23005650_SNP [dm6]	C	G	2.347e^-5	0.802	INTRON CG34375
3R	18867028	3R_18867028_SNP [dm3] 3R_23041306_SNP [dm6]	C	T	2.362e^-5	0.802	UPSTREAM CG13838 EXON CR44226	TF binding site BDTNP1_TFBS_twi
3L	1769458	3L_1769458_SNP [dm3] 3L_1769458_SNP [dm6]	C	T	2.439e^-5	0.802	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad
2R	2590666	2R_2590666_SNP [dm3] 2R_6703161_SNP [dm6]	G	A	2.450e^-5	0.802	SYNONYMOUS_CODING CG3409 UTR_3_PRIME CG45092	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22827055	3R_22827055_SNP [dm3] 3R_27001333_SNP [dm6]	T	C	2.458e^-5	0.802	SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
3L	12091216	3L_12091216_SNP [dm3] 3L_12098116_SNP [dm6]	C	T	2.463e^-5	0.802	INTERGENIC
3R	22826935	3R_22826935_SNP [dm3] 3R_27001213_SNP [dm6]	C	T	2.486e^-5	0.802	SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
3R	18831378	3R_18831378_SNP [dm3] 3R_23005656_SNP [dm6]	C	A	2.517e^-5	0.802	INTRON CG34375
3R	18814141	3R_18814141_SNP [dm3] 3R_22988419_SNP [dm6]	C	T	2.526e^-5	0.802	SYNONYMOUS_CODING Or94a UPSTREAM Or94b INTRON Nha2
2L	6554939	2L_6554939_SNP [dm3] 2L_6554939_SNP [dm6]	T	A	2.529e^-5	0.802	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26122967	3R_26122967_SNP [dm3] 3R_30297245_SNP [dm6]	A	T	2.609e^-5	0.802	INTRON hdc	TF binding site mE1_TFBS_inv
X	4339560	X_4339560_SNP [dm3] X_4445527_SNP [dm6]	C	T	2.633e^-5	0.802	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	5478837	3L_5478837_SNP [dm3] 3L_5485737_SNP [dm6]	G	A	2.633e^-5	0.802	INTERGENIC
3L	10890602	3L_10890602_SNP [dm3] 3L_10897502_SNP [dm6]	C	A	2.670e^-5	0.802	INTRON Aps
3L	21800536	3L_21800536_SNP [dm3] 3L_21807436_SNP [dm6]	T	G	2.761e^-5	0.802	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9032665	2R_9032665_SNP [dm3] 2R_13145160_SNP [dm6]	G	T	2.787e^-5	0.802	UTR_3_PRIME Ack-like INTRON Ack-like
3L	21815445	3L_21815445_SNP [dm3] 3L_21822345_SNP [dm6]	A	C	2.928e^-5	0.802	INTRON CycH	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	20024190	X_20024190_SNP [dm3] X_20130157_SNP [dm6]	C	A	2.993e^-5	0.802	DOWNSTREAM CG42582 INTERGENIC
3L	13096384	3L_13096384_SNP [dm3] 3L_13103284_SNP [dm6]	G	A	2.994e^-5	0.802	INTERGENIC
2L	18874715	2L_18874715_SNP [dm3] 2L_18874715_SNP [dm6]	T	G	3.030e^-5	0.802	INTRON tup	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11649526	3L_11649526_SNP [dm3] 3L_11656426_SNP [dm6]	T	G	3.145e^-5	0.802	UPSTREAM mir-274 INTRON CG32085
2R	3266876	2R_3266876_SNP [dm3] 2R_7379371_SNP [dm6]	C	T	3.151e^-5	0.802	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	16391986	2L_16391986_SNP [dm3] 2L_16391986_SNP [dm6]	C	A	3.155e^-5	0.802	INTERGENIC
3L	11816251	3L_11816251_SNP [dm3] 3L_11823151_SNP [dm6]	C	T	3.165e^-5	0.802	UPSTREAM CG11597 & 1 other DOWNSTREAM snoRNA:Psi18S-920 INTRON RpL10Ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11816253	3L_11816253_SNP [dm3] 3L_11823153_SNP [dm6]	G	A	3.165e^-5	0.802	UPSTREAM CG11597 & 1 other DOWNSTREAM snoRNA:Psi18S-920 INTRON RpL10Ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11816269	3L_11816269_SNP [dm3] 3L_11823169_SNP [dm6]	C	T	3.165e^-5	0.802	UPSTREAM CG11597 & 1 other DOWNSTREAM snoRNA:Psi18S-920 INTRON RpL10Ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11816279	3L_11816279_SNP [dm3] 3L_11823179_SNP [dm6]	A	T	3.165e^-5	0.802	UPSTREAM CG11597 & 1 other DOWNSTREAM snoRNA:Psi18S-920 INTRON RpL10Ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11816705	3L_11816705_SNP [dm3] 3L_11823605_SNP [dm6]	T	C	3.165e^-5	0.802	DOWNSTREAM snoRNA:Psi18S-920 & 1 other INTRON RpL10Ab	TF binding site mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	11818414	3L_11818414_SNP [dm3] 3L_11825314_SNP [dm6]	A	T	3.165e^-5	0.802	NON_SYNONYMOUS_CODING CG32095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3604441	X_3604441_SNP [dm3] X_3710408_SNP [dm6]	G	A	3.361e^-5	0.831	INTRON Rala
2L	5417954	2L_5417954_SNP [dm3] 2L_5417954_SNP [dm6]	A	T	3.410e^-5	0.831	INTERGENIC
2L	5417960	2L_5417960_SNP [dm3] 2L_5417960_SNP [dm6]	G	A	3.410e^-5	0.831	INTERGENIC
2R	823101	2R_823101_SNP [dm3] 2R_4935596_SNP [dm6]	T	G	3.532e^-5	0.842	INTRON Ir41a	transposable element FlyBase
2L	4012804	2L_4012804_SNP [dm3] 2L_4012804_SNP [dm6]	A	G	3.601e^-5	0.842	INTERGENIC
2R	16967741	2R_16967741_SNP [dm3] 2R_21080236_SNP [dm6]	T	C	3.656e^-5	0.842	UPSTREAM Treh INTRON Treh
3L	11649522	3L_11649522_SNP [dm3] 3L_11656422_SNP [dm6]	G	A	3.681e^-5	0.842	UPSTREAM mir-274 INTRON CG32085
2R	9496921	2R_9496921_SNP [dm3] 2R_13609416_SNP [dm6]	T	C	3.845e^-5	0.842	UPSTREAM CG12464 INTERGENIC
3R	4056534	3R_4056534_SNP [dm3] 3R_8230812_SNP [dm6]	C	T	3.874e^-5	0.842	EXON CR45551
2R	3614489	2R_3614489_SNP [dm3] 2R_7726984_SNP [dm6]	G	A	3.883e^-5	0.842	UPSTREAM CG18812 INTRON CG18812
2R	19372741	2R_19372741_SNP [dm3] 2R_23485218_SNP [dm6]	G	A	3.884e^-5	0.842	SYNONYMOUS_CODING CG43795
2R	10461458	2R_10461458_SNP [dm3] 2R_14573953_SNP [dm6]	A	T	3.899e^-5	0.842	INTRON ttv & 1 other
2R	9579348	2R_9579348_SNP [dm3] 2R_13691843_SNP [dm6]	T	A	3.907e^-5	0.842	UTR_3_PRIME CG6220 INTRON fas
2R	7514748	2R_7514748_INS [dm3] 2R_11627243_INS [dm6]	A	AAGTTAA	4.044e^-5	0.86	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	13128300	3L_13128300_SNP [dm3] 3L_13135200_SNP [dm6]	T	A	4.080e^-5	0.86	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	21037364	3L_21037364_SNP [dm3] 3L_21044264_SNP [dm6]	A	G	4.291e^-5	0.894	INTRON siz	TF binding site mE1_TFBS_sens
3R	19126708	3R_19126708_SNP [dm3] 3R_23300986_SNP [dm6]	A	G	4.380e^-5	0.897	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11802520	3L_11802520_SNP [dm3] 3L_11809420_SNP [dm6]	A	T	4.437e^-5	0.897	NON_SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad
3R	19126717	3R_19126717_SNP [dm3] 3R_23300995_SNP [dm6]	T	C	4.450e^-5	0.897	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17692746	2L_17692746_SNP [dm3] 2L_17692746_SNP [dm6]	G	C	4.547e^-5	0.903	INTRON CadN
3R	4144730	3R_4144730_SNP [dm3] 3R_8319008_SNP [dm6]	A	T	4.642e^-5	0.903	UTR_3_PRIME Ctr1B DOWNSTREAM Poxm
3R	4056610	3R_4056610_SNP [dm3] 3R_8230888_SNP [dm6]	G	A	4.676e^-5	0.903	EXON CR45551
3L	11807447	3L_11807447_SNP [dm3] 3L_11814347_SNP [dm6]	C	G	4.854e^-5	0.903	NON_SYNONYMOUS_CODING CG42255
2R	8166810	2R_8166810_SNP [dm3] 2R_12279305_SNP [dm6]	A	T	4.974e^-5	0.903	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	1344020	2R_1344020_SNP [dm3] 2R_5456515_SNP [dm6]	T	A	4.976e^-5	0.903	DOWNSTREAM laccase2 INTERGENIC	transposable element FlyBase
2L	13873649	2L_13873649_SNP [dm3] 2L_13873649_SNP [dm6]	G	T	5.061e^-5	0.903	INTRON CenG1A
3R	25743063	3R_25743063_SNP [dm3] 3R_29917341_SNP [dm6]	A	G	5.276e^-5	0.903	INTRON trp
2R	16425695	2R_16425695_SNP [dm3] 2R_20538190_SNP [dm6]	T	C	5.310e^-5	0.903	UTR_3_PRIME CG13423 DOWNSTREAM CG13427	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	833101	2R_833101_SNP [dm3] 2R_4945596_SNP [dm6]	G	T	5.363e^-5	0.903	INTRON Ir41a	transposable element FlyBase
2R	18132117	2R_18132117_SNP [dm3] 2R_22244612_SNP [dm6]	C	T	5.457e^-5	0.903	UTR_5_PRIME dve	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17180143	2R_17180143_SNP [dm3] 2R_21292638_SNP [dm6]	C	T	5.469e^-5	0.903	SYNONYMOUS_CODING Sgf29 UPSTREAM CG30392	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11805946	3L_11805946_SNP [dm3] 3L_11812846_SNP [dm6]	G	T	5.497e^-5	0.903	NON_SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11649544	3L_11649544_SNP [dm3] 3L_11656444_SNP [dm6]	G	A	5.586e^-5	0.903	UPSTREAM mir-274 INTRON CG32085
3R	26517781	3R_26517781_SNP [dm3] 3R_30692059_SNP [dm6]	G	T	5.660e^-5	0.903	NON_SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11991181	3R_11991181_SNP [dm3] 3R_16165459_SNP [dm6]	C	T	5.711e^-5	0.903	INTRON CG6006
3R	22827352	3R_22827352_SNP [dm3] 3R_27001630_SNP [dm6]	A	G	5.746e^-5	0.903	SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
2L	2011877	2L_2011877_SNP [dm3] 2L_2011877_SNP [dm6]	A	G	5.749e^-5	0.903	UPSTREAM tRNA:CR31940 INTRON CG4238
3R	4038105	3R_4038105_SNP [dm3] 3R_8212383_SNP [dm6]	T	C	5.846e^-5	0.903	INTERGENIC
2R	823096	2R_823096_SNP [dm3] 2R_4935591_SNP [dm6]	G	T	5.909e^-5	0.903	INTRON Ir41a	transposable element FlyBase
2L	2230521	2L_2230521_DEL [dm3] 2L_2230521_DEL [dm6]	GATTTCTCTGG...	G	5.924e^-5	0.903	UTR_3_PRIME rti DOWNSTREAM Sec24CD & 1 other
3R	23515838	3R_23515838_SNP [dm3] 3R_27690116_SNP [dm6]	A	G	6.011e^-5	0.903	INTRON CG12880	TF binding site mE1_TFBS_chinmo
3R	19126719	3R_19126719_SNP [dm3] 3R_23300997_SNP [dm6]	A	T	6.032e^-5	0.903	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18400590	2L_18400590_SNP [dm3] 2L_18400590_SNP [dm6]	T	C	6.043e^-5	0.903	EXON CR44486
3L	20922067	3L_20922067_SNP [dm3] 3L_20928967_SNP [dm6]	A	G	6.058e^-5	0.903	SYNONYMOUS_CODING CG10589 INTRON fng	TF binding site mE1_TFBS_sens
3L	1769326	3L_1769326_SNP [dm3] 3L_1769326_SNP [dm6]	T	G	6.080e^-5	0.903	SPLICE_SITE_REGION Dhc62B INTRON Dhc62B	TF binding site mE1_TFBS_cad
3L	21800856	3L_21800856_SNP [dm3] 3L_21807756_SNP [dm6]	A	G	6.085e^-5	0.903	UPSTREAM eg INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13611769	2L_13611769_SNP [dm3] 2L_13611769_SNP [dm6]	C	T	6.131e^-5	0.903	INTRON kuz
3R	8421564	3R_8421564_SNP [dm3] 3R_12595842_SNP [dm6]	A	C	6.254e^-5	0.903	UPSTREAM Octbeta2R INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14653084	2L_14653084_SNP [dm3] 2L_14653084_SNP [dm6]	A	G	6.263e^-5	0.903	INTRON osp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19039672	3R_19039672_SNP [dm3] 3R_23213950_SNP [dm6]	T	G	6.345e^-5	0.903	INTRON cnc	TF binding site mE1_TFBS_HSA
2R	19551009	2R_19551009_INS [dm3] 2R_23663486_INS [dm6]	A	GC	6.372e^-5	0.903	INTRON Pde8	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25219702	3R_25219702_SNP [dm3] 3R_29393980_SNP [dm6]	T	C	6.375e^-5	0.903	INTRON Ptp99A
3L	1769223	3L_1769223_SNP [dm3] 3L_1769223_SNP [dm6]	T	A	6.439e^-5	0.903	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad
3L	16921348	3L_16921348_SNP [dm3] 3L_16928248_SNP [dm6]	A	G	6.537e^-5	0.903	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC
3L	21802326	3L_21802326_SNP [dm3] 3L_21809226_SNP [dm6]	G	A	6.556e^-5	0.903	UTR_5_PRIME eg INTRON eg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9661950	2R_9661950_SNP [dm3] 2R_13774445_SNP [dm6]	G	T	6.561e^-5	0.903	NON_SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo
3L	11649535	3L_11649535_SNP [dm3] 3L_11656435_SNP [dm6]	A	G	6.643e^-5	0.903	UPSTREAM mir-274 INTRON CG32085
2R	7952624	2R_7952624_DEL [dm3] 2R_12065119_DEL [dm6]	GT	C	6.648e^-5	0.903	INTRON CG8888
2L	13263418	2L_13263418_SNP [dm3] 2L_13263418_SNP [dm6]	T	G	6.743e^-5	0.903	INTRON CG44085
3L	4155871	3L_4155871_SNP [dm3] 3L_4155871_SNP [dm6]	G	A	6.848e^-5	0.903	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18854095	2R_18854095_SNP [dm3] 2R_22966572_SNP [dm6]	C	G	6.885e^-5	0.903	INTERGENIC
3R	10078329	3R_10078329_INS [dm3] 3R_14252607_INS [dm6]	T	TTCAGCTCACT...	6.940e^-5	0.903	INTRON Aats-met
3R	27263998	3R_27263998_SNP [dm3] 3R_31438276_SNP [dm6]	A	G	6.960e^-5	0.903	INTRON Gprk2
X	20879685	X_20879685_DEL [dm3] X_21008658_DEL [dm6]	TC	T	7.012e^-5	0.903	INTERGENIC
2L	5417950	2L_5417950_SNP [dm3] 2L_5417950_SNP [dm6]	G	T	7.069e^-5	0.903	INTERGENIC
2R	19975004	2R_19975004_SNP [dm3] 2R_24087481_SNP [dm6]	G	C	7.073e^-5	0.903	INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11649543	3L_11649543_SNP [dm3] 3L_11656443_SNP [dm6]	A	C	7.183e^-5	0.903	UPSTREAM mir-274 INTRON CG32085
3L	11649534	3L_11649534_SNP [dm3] 3L_11656434_SNP [dm6]	C	A	7.241e^-5	0.903	UPSTREAM mir-274 INTRON CG32085
2R	13861292	2R_13861292_SNP [dm3] 2R_17973787_SNP [dm6]	A	T	7.349e^-5	0.903	INTERGENIC
3L	11806452	3L_11806452_SNP [dm3] 3L_11813352_SNP [dm6]	G	A	7.411e^-5	0.903	SYNONYMOUS_CODING CG42255	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	8166802	2R_8166802_SNP [dm3] 2R_12279297_SNP [dm6]	C	A	7.477e^-5	0.903	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3R	25464557	3R_25464557_SNP [dm3] 3R_29638835_SNP [dm6]	G	A	7.597e^-5	0.903	INTRON Dop1R2
2L	17884496	2L_17884496_SNP [dm3] 2L_17884496_SNP [dm6]	C	A	7.599e^-5	0.903	INTERGENIC
2L	5417896	2L_5417896_SNP [dm3] 2L_5417896_SNP [dm6]	C	A	7.629e^-5	0.903	INTERGENIC
2L	13307914	2L_13307914_SNP [dm3] 2L_13307914_SNP [dm6]	T	G	7.636e^-5	0.903	UTR_3_PRIME CG43778 DOWNSTREAM CG16825 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	20953369	3L_20953369_SNP [dm3] 3L_20960269_SNP [dm6]	T	A	7.659e^-5	0.903	UTR_3_PRIME CG10588 DOWNSTREAM CG11037 & 1 other
3L	10889246	3L_10889246_SNP [dm3] 3L_10896146_SNP [dm6]	A	C	7.670e^-5	0.903	SYNONYMOUS_CODING Aps
2R	8924165	2R_8924165_SNP [dm3] 2R_13036660_SNP [dm6]	A	T	7.673e^-5	0.903	INTERGENIC
X	11890340	X_11890340_SNP [dm3] X_11996307_SNP [dm6]	A	T	7.729e^-5	0.903	INTRON fw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10726706	3L_10726706_SNP [dm3] 3L_10733606_SNP [dm6]	T	A	7.743e^-5	0.903	INTERGENIC
2L	3378359	2L_3378359_SNP [dm3] 2L_3378359_SNP [dm6]	T	C	7.790e^-5	0.903	SYNONYMOUS_CODING Ptpa
2L	1365260	2L_1365260_SNP [dm3] 2L_1365260_SNP [dm6]	C	T	7.840e^-5	0.903	INTERGENIC
3R	18745000	3R_18745000_SNP [dm3] 3R_22919278_SNP [dm6]	G	A	7.929e^-5	0.903	INTRON klg
3R	19094434	3R_19094434_SNP [dm3] 3R_23268712_SNP [dm6]	C	G	7.938e^-5	0.903	UPSTREAM orb INTRON orb
3R	15175972	3R_15175972_SNP [dm3] 3R_19350250_SNP [dm6]	G	A	7.966e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8312413	3L_8312413_SNP [dm3] 3L_8319313_SNP [dm6]	T	A	8.021e^-5	0.903	UPSTREAM CG43059 INTERGENIC
3L	10630876	3L_10630876_SNP [dm3] 3L_10637776_SNP [dm6]	A	C	8.109e^-5	0.903	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19126712	3R_19126712_SNP [dm3] 3R_23300990_SNP [dm6]	A	C	8.132e^-5	0.903	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11805116	3L_11805116_SNP [dm3] 3L_11812016_SNP [dm6]	A	G	8.197e^-5	0.903	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18524107	3R_18524107_SNP [dm3] 3R_22698385_SNP [dm6]	C	T	8.401e^-5	0.903	UTR_5_PRIME Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	4355300	2R_4355300_SNP [dm3] 2R_8467795_SNP [dm6]	T	G	8.410e^-5	0.903	DOWNSTREAM Mal-A6 & 1 other INTERGENIC
3R	19173756	3R_19173756_SNP [dm3] 3R_23348034_SNP [dm6]	G	A	8.653e^-5	0.903	UPSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	4339604	X_4339604_SNP [dm3] X_4445571_SNP [dm6]	A	C	8.672e^-5	0.903	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	4339684	X_4339684_SNP [dm3] X_4445651_SNP [dm6]	G	A	8.756e^-5	0.903	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	17715354	3L_17715354_SNP [dm3] 3L_17722254_SNP [dm6]	T	A	8.796e^-5	0.903	INTRON Ccn
2L	18169379	2L_18169379_SNP [dm3] 2L_18169379_SNP [dm6]	T	G	8.806e^-5	0.903	INTRON CG42750
2L	16713868	2L_16713868_SNP [dm3] 2L_16713868_SNP [dm6]	C	T	8.869e^-5	0.903	INTRON CG31808
3L	5932574	3L_5932574_INS [dm3] 3L_5939474_INS [dm6]	G	GGCT	8.885e^-5	0.903	INTRON CG33993
2L	16569941	2L_16569941_SNP [dm3] 2L_16569941_SNP [dm6]	G	T	8.929e^-5	0.903	INTRON CG42389
2R	19369155	2R_19369155_SNP [dm3] 2R_23481632_SNP [dm6]	A	T	8.944e^-5	0.903	INTRON CG43795
2R	9497217	2R_9497217_SNP [dm3] 2R_13609712_SNP [dm6]	A	C	8.961e^-5	0.903	UPSTREAM CG12464 INTERGENIC
3L	7293162	3L_7293162_SNP [dm3] 3L_7300062_SNP [dm6]	T	C	8.983e^-5	0.903	INTRON unc-13-4A
2R	10461622	2R_10461622_SNP [dm3] 2R_14574117_SNP [dm6]	G	T	9.016e^-5	0.903	INTRON ttv & 1 other
2L	21211920	2L_21211920_SNP [dm3] 2L_21211920_SNP [dm6]	C	T	9.092e^-5	0.903	DOWNSTREAM Atg18b & 1 other INTERGENIC
2L	4047104	2L_4047104_SNP [dm3] 2L_4047104_SNP [dm6]	G	A	9.201e^-5	0.903	INTRON ed
2L	16996015	2L_16996015_SNP [dm3] 2L_16996015_SNP [dm6]	C	G	9.269e^-5	0.903	INTERGENIC
2L	15185212	2L_15185212_SNP [dm3] 2L_15185212_SNP [dm6]	A	T	9.338e^-5	0.903	INTRON CG4168
2L	5417956	2L_5417956_SNP [dm3] 2L_5417956_SNP [dm6]	C	A	9.349e^-5	0.903	INTERGENIC
3L	10330921	3L_10330921_SNP [dm3] 3L_10337821_SNP [dm6]	T	C	9.383e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4346180	2R_4346180_SNP [dm3] 2R_8458675_SNP [dm6]	C	T	9.453e^-5	0.903	UPSTREAM Mal-A4 & 1 other INTERGENIC
2R	8231457	2R_8231457_SNP [dm3] 2R_12343952_SNP [dm6]	C	G	9.513e^-5	0.903	INTRON CG8839	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2R	497993	2R_497993_SNP [dm3] 2R_4610488_SNP [dm6]	G	C	9.529e^-5	0.903	DOWNSTREAM p120ctn INTERGENIC	transposable element FlyBase
2L	20301152	2L_20301152_SNP [dm3] 2L_20301152_SNP [dm6]	G	A	9.606e^-5	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18169378	2L_18169378_SNP [dm3] 2L_18169378_SNP [dm6]	A	G	9.651e^-5	0.903	INTRON CG42750
3L	11806085	3L_11806085_SNP [dm3] 3L_11812985_SNP [dm6]	A	C	9.667e^-5	0.903	NON_SYNONYMOUS_CODING CG42255	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15475658	3L_15475658_SNP [dm3] 3L_15482558_SNP [dm6]	T	A	9.771e^-5	0.903	INTERGENIC
2R	1356807	2R_1356807_SNP [dm3] 2R_5469302_SNP [dm6]	C	A	9.775e^-5	0.903	INTRON CG30440	transposable element FlyBase
3L	11806429	3L_11806429_SNP [dm3] 3L_11813329_SNP [dm6]	G	A	9.786e^-5	0.903	NON_SYNONYMOUS_CODING CG42255	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	12487558	3L_12487558_SNP [dm3] 3L_12494458_SNP [dm6]	G	A	9.839e^-5	0.903	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9578297	2R_9578297_SNP [dm3] 2R_13690792_SNP [dm6]	C	A	1.002e^-4	0.903	DOWNSTREAM CG6220 INTRON fas
2R	7514770	2R_7514770_SNP [dm3] 2R_11627265_SNP [dm6]	C	G	1.008e^-4	0.903	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	10437080	X_10437080_SNP [dm3] X_10543047_SNP [dm6]	G	A	1.012e^-4	0.903	INTRON spri
3R	16776197	3R_16776197_SNP [dm3] 3R_20950475_SNP [dm6]	A	G	1.014e^-4	0.903	INTRON Atpalpha	TF binding site BDTNP1_TFBS_dl
3L	11806578	3L_11806578_SNP [dm3] 3L_11813478_SNP [dm6]	C	A	1.028e^-4	0.903	INTRON CG42255	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	14652622	2L_14652622_SNP [dm3] 2L_14652622_SNP [dm6]	C	T	1.034e^-4	0.903	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4133793	2L_4133793_SNP [dm3] 2L_4133793_SNP [dm6]	C	A	1.040e^-4	0.903	INTERGENIC
2L	8012476	2L_8012476_SNP [dm3] 2L_8012476_SNP [dm6]	T	A	1.046e^-4	0.903	UPSTREAM Tg INTRON Tg
2R	20363895	2R_20363895_SNP [dm3] 2R_24476372_SNP [dm6]	T	A	1.046e^-4	0.903	DOWNSTREAM CG16837 INTRON CG13579
2R	14566913	2R_14566913_SNP [dm3] 2R_18679408_SNP [dm6]	G	T	1.046e^-4	0.903	NON_SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_sens
2R	10461710	2R_10461710_SNP [dm3] 2R_14574205_SNP [dm6]	C	T	1.050e^-4	0.903	INTRON ttv & 1 other
3L	5932557	3L_5932557_INS [dm3] 3L_5939457_INS [dm6]	A	AA	1.055e^-4	0.903	INTRON CG33993
2R	17961008	2R_17961008_INS [dm3] 2R_22073503_INS [dm6]	T	TT	1.058e^-4	0.903	UPSTREAM CG11474 DOWNSTREAM CG2921 INTERGENIC	TF binding site mE1_TFBS_cad
3R	19094450	3R_19094450_SNP [dm3] 3R_23268728_SNP [dm6]	G	A	1.066e^-4	0.903	UPSTREAM orb INTRON orb
3R	26165505	3R_26165505_SNP [dm3] 3R_30339783_SNP [dm6]	C	T	1.073e^-4	0.903	INTRON hdc
2R	12542749	2R_12542749_SNP [dm3] 2R_16655244_SNP [dm6]	T	A	1.074e^-4	0.903	UPSTREAM Nach DOWNSTREAM Picot INTERGENIC
2L	16238107	2L_16238107_SNP [dm3] 2L_16238107_SNP [dm6]	C	T	1.078e^-4	0.903	SPLICE_SITE_REGION CG42817 INTRON CG42817
3L	16263370	3L_16263370_SNP [dm3] 3L_16270270_SNP [dm6]	G	C	1.083e^-4	0.903	DOWNSTREAM CG34248 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2L	18169356	2L_18169356_SNP [dm3] 2L_18169356_SNP [dm6]	A	G	1.085e^-4	0.903	INTRON CG42750
2L	13876388	2L_13876388_SNP [dm3] 2L_13876388_SNP [dm6]	G	A	1.086e^-4	0.903	INTRON CenG1A
2R	17480744	2R_17480744_SNP [dm3] 2R_21593239_SNP [dm6]	T	A	1.086e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	11220353	3R_11220353_INS [dm3] 3R_15394631_INS [dm6]	A	AT	1.086e^-4	0.903	INTRON Rbp
2R	7514473	2R_7514473_SNP [dm3] 2R_11626968_SNP [dm6]	A	G	1.086e^-4	0.903	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	4038869	3R_4038869_SNP [dm3] 3R_8213147_SNP [dm6]	G	A	1.090e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	13634705	2L_13634705_SNP [dm3] 2L_13634705_SNP [dm6]	C	G	1.113e^-4	0.903	SYNONYMOUS_CODING kuz	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	22826842	3R_22826842_SNP [dm3] 3R_27001120_SNP [dm6]	G	A	1.126e^-4	0.903	SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4115388	3R_4115388_SNP [dm3] 3R_8289666_SNP [dm6]	C	G	1.127e^-4	0.903	UTR_3_PRIME CG11672 INTRON CG11672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13740122	2L_13740122_DEL [dm3] 2L_13740122_DEL [dm6]	GAATAAAATTATCTCAGATA...	G	1.163e^-4	0.903	INTERGENIC
3L	10632223	3L_10632223_SNP [dm3] 3L_10639123_SNP [dm6]	C	T	1.167e^-4	0.903	UPSTREAM E_z_ & 1 other INTRON CG8009
2L	1384452	2L_1384452_SNP [dm3] 2L_1384452_SNP [dm6]	A	G	1.175e^-4	0.903	INTRON lea
2R	6116494	2R_6116494_SNP [dm3] 2R_10228989_SNP [dm6]	A	T	1.183e^-4	0.903	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
2R	9575364	2R_9575364_SNP [dm3] 2R_13687859_SNP [dm6]	A	T	1.183e^-4	0.903	INTRON fas
X	3713719	X_3713719_SNP [dm3] X_3819686_SNP [dm6]	C	T	1.184e^-4	0.903	UPSTREAM tRNA:CR32785 INTRON ec
2R	8925102	2R_8925102_SNP [dm3] 2R_13037597_SNP [dm6]	C	T	1.186e^-4	0.903	INTERGENIC
3L	10251725	3L_10251725_SNP [dm3] 3L_10258625_SNP [dm6]	G	C	1.187e^-4	0.903	INTERGENIC
2L	2327753	2L_2327753_SNP [dm3] 2L_2327753_SNP [dm6]	A	T	1.189e^-4	0.903	INTRON CG9967 & 1 other
2R	19551007	2R_19551007_SNP [dm3] 2R_23663484_SNP [dm6]	A	C	1.191e^-4	0.903	INTRON Pde8	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	812527	3L_812527_SNP [dm3] 3L_812527_SNP [dm6]	T	A	1.191e^-4	0.903	UPSTREAM CR44537 INTERGENIC
3L	3698033	3L_3698033_SNP [dm3] 3L_3698033_SNP [dm6]	G	T	1.191e^-4	0.903	INTERGENIC
2L	3410944	2L_3410944_SNP [dm3] 2L_3410944_SNP [dm6]	C	G	1.195e^-4	0.903	SYNONYMOUS_CODING CG8840 INTRON pgant2
2L	11189327	2L_11189327_SNP [dm3] 2L_11189327_SNP [dm6]	T	C	1.197e^-4	0.903	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11189330	2L_11189330_SNP [dm3] 2L_11189330_SNP [dm6]	A	T	1.197e^-4	0.903	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5167050	3L_5167050_SNP [dm3] 3L_5173950_SNP [dm6]	G	C	1.200e^-4	0.903	INTRON shep
3L	12091019	3L_12091019_SNP [dm3] 3L_12097919_SNP [dm6]	T	G	1.203e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17692595	3L_17692595_SNP [dm3] 3L_17699495_SNP [dm6]	G	C	1.204e^-4	0.903	INTRON Ccn
2R	8924969	2R_8924969_SNP [dm3] 2R_13037464_SNP [dm6]	T	A	1.208e^-4	0.903	INTERGENIC
2L	11218971	2L_11218971_SNP [dm3] 2L_11218971_SNP [dm6]	C	T	1.211e^-4	0.903	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19349615	2R_19349615_SNP [dm3] 2R_23462092_SNP [dm6]	C	T	1.213e^-4	0.903	INTRON CG43795	TF binding site mE1_TFBS_inv
3L	10623302	3L_10623302_SNP [dm3] 3L_10630202_SNP [dm6]	A	T	1.215e^-4	0.903	UPSTREAM CG42536 & 2 others INTRON CG42535	TF binding site mE1_TFBS_bab1 mE1_TFBS_run
3R	2821694	3R_2821694_SNP [dm3] 3R_6995972_SNP [dm6]	G	T	1.229e^-4	0.903	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	13332749	2L_13332749_SNP [dm3] 2L_13332749_SNP [dm6]	A	G	1.229e^-4	0.903	INTERGENIC
2L	15521086	2L_15521086_SNP [dm3] 2L_15521086_SNP [dm6]	A	C	1.234e^-4	0.903	UPSTREAM CR43761 INTERGENIC
3L	13374071	3L_13374071_SNP [dm3] 3L_13380971_SNP [dm6]	G	A	1.242e^-4	0.903	SYNONYMOUS_CODING CG14107 DOWNSTREAM CG14111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7877597	3R_7877597_SNP [dm3] 3R_12051875_SNP [dm6]	G	C	1.242e^-4	0.903	INTERGENIC
3L	10632093	3L_10632093_SNP [dm3] 3L_10638993_SNP [dm6]	T	G	1.243e^-4	0.903	UPSTREAM E_z_ & 1 other INTRON CG8009
3R	4073366	3R_4073366_SNP [dm3] 3R_8247644_SNP [dm6]	G	C	1.245e^-4	0.903	SYNONYMOUS_CODING CG18749 UTR_3_PRIME CG33722 UPSTREAM CG15864	TF binding site mE1_TFBS_HSA
2L	13332739	2L_13332739_SNP [dm3] 2L_13332739_SNP [dm6]	C	A	1.254e^-4	0.903	INTERGENIC
3R	13870068	3R_13870068_SNP [dm3] 3R_18044346_SNP [dm6]	G	C	1.276e^-4	0.903	DOWNSTREAM htl INTERGENIC
2R	4531421	2R_4531421_SNP [dm3] 2R_8643916_SNP [dm6]	C	A	1.278e^-4	0.903	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10251787	3L_10251787_SNP [dm3] 3L_10258687_SNP [dm6]	A	G	1.280e^-4	0.903	INTERGENIC
3R	18655451	3R_18655451_SNP [dm3] 3R_22829729_SNP [dm6]	A	C	1.289e^-4	0.903	INTERGENIC
3R	18830788	3R_18830788_SNP [dm3] 3R_23005066_SNP [dm6]	C	A	1.292e^-4	0.903	INTRON CG34375	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4347905	2R_4347905_SNP [dm3] 2R_8460400_SNP [dm6]	C	T	1.295e^-4	0.903	SYNONYMOUS_CODING Mal-A4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	1960715	3R_1960715_SNP [dm3] 3R_6134993_SNP [dm6]	C	A	1.297e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17687418	3L_17687418_SNP [dm3] 3L_17694318_SNP [dm6]	A	T	1.300e^-4	0.903	INTRON Ccn
3L	4091893	3L_4091893_SNP [dm3] 3L_4091893_SNP [dm6]	C	T	1.304e^-4	0.903	UTR_3_PRIME CG14989 DOWNSTREAM CG14989
3L	6061843	3L_6061843_DEL [dm3] 3L_6068743_DEL [dm6]	TC	T	1.309e^-4	0.903	INTRON CG42269	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10632147	3L_10632147_SNP [dm3] 3L_10639047_SNP [dm6]	T	A	1.314e^-4	0.903	UPSTREAM E_z_ & 1 other INTRON CG8009
3R	25286619	3R_25286619_SNP [dm3] 3R_29460897_SNP [dm6]	C	G	1.318e^-4	0.903	UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	6336190	2R_6336190_SNP [dm3] 2R_10448685_SNP [dm6]	G	T	1.326e^-4	0.903	DOWNSTREAM Cyp49a1 INTRON Galphao
X	18247447	X_18247447_SNP [dm3] X_18353414_SNP [dm6]	G	A	1.327e^-4	0.903	INTRON CG6123
3L	1757832	3L_1757832_SNP [dm3] 3L_1757832_SNP [dm6]	A	G	1.329e^-4	0.903	NON_SYNONYMOUS_CODING CG8001	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22636244	3R_22636244_SNP [dm3] 3R_26810522_SNP [dm6]	T	C	1.336e^-4	0.903	INTRON Tl
2R	2882279	2R_2882279_SNP [dm3] 2R_6994774_SNP [dm6]	T	C	1.337e^-4	0.903	DOWNSTREAM CG30159 INTRON Tsp42Ea	TF binding site mE1_TFBS_Trl
3R	18705880	3R_18705880_SNP [dm3] 3R_22880158_SNP [dm6]	T	G	1.346e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14653086	2L_14653086_SNP [dm3] 2L_14653086_SNP [dm6]	G	A	1.348e^-4	0.903	INTRON osp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11808197	3L_11808197_SNP [dm3] 3L_11815097_SNP [dm6]	C	G	1.354e^-4	0.903	UPSTREAM CG14130 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3153734	2L_3153734_SNP [dm3] 2L_3153734_SNP [dm6]	A	C	1.355e^-4	0.903	UPSTREAM Mad INTRON Mad
2L	20301193	2L_20301193_SNP [dm3] 2L_20301193_SNP [dm6]	G	T	1.357e^-4	0.903	INTERGENIC
2R	9496946	2R_9496946_SNP [dm3] 2R_13609441_SNP [dm6]	T	A	1.364e^-4	0.903	UPSTREAM CG12464 INTERGENIC
3L	7628951	3L_7628951_SNP [dm3] 3L_7635851_SNP [dm6]	T	G	1.375e^-4	0.903	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13096364	3L_13096364_SNP [dm3] 3L_13103264_SNP [dm6]	A	T	1.380e^-4	0.903	INTERGENIC
3L	7293797	3L_7293797_SNP [dm3] 3L_7300697_SNP [dm6]	C	T	1.383e^-4	0.903	INTRON unc-13-4A
2L	314410	2L_314410_SNP [dm3] 2L_314410_SNP [dm6]	A	G	1.384e^-4	0.903	INTRON Plc21C
3L	5223546	3L_5223546_SNP [dm3] 3L_5230446_SNP [dm6]	G	A	1.403e^-4	0.903	INTRON shep
2L	17546568	2L_17546568_SNP [dm3] 2L_17546568_SNP [dm6]	C	T	1.415e^-4	0.903	UPSTREAM CR45697 INTERGENIC
3R	7880721	3R_7880721_SNP [dm3] 3R_12054999_SNP [dm6]	G	A	1.419e^-4	0.903	INTERGENIC
2L	13109836	2L_13109836_SNP [dm3] 2L_13109836_SNP [dm6]	C	G	1.429e^-4	0.903	DOWNSTREAM CG5142 INTERGENIC
X	4791837	X_4791837_SNP [dm3] X_4897804_SNP [dm6]	T	G	1.445e^-4	0.903	INTRON CG42594
3L	21804300	3L_21804300_SNP [dm3] 3L_21811200_SNP [dm6]	G	T	1.450e^-4	0.903	INTRON eg	TF binding site mE1_TFBS_sens
2R	8924087	2R_8924087_DEL [dm3] 2R_13036582_DEL [dm6]	TA	T	1.463e^-4	0.903	INTERGENIC
2R	3732384	2R_3732384_SNP [dm3] 2R_7844879_SNP [dm6]	T	C	1.464e^-4	0.903	SPLICE_SITE_REGION Dgk INTRON Dgk
3R	22826826	3R_22826826_SNP [dm3] 3R_27001104_SNP [dm6]	C	T	1.476e^-4	0.903	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3553154	3R_3553154_SNP [dm3] 3R_7727432_SNP [dm6]	G	A	1.477e^-4	0.903	INTERGENIC
2L	15111873	2L_15111873_SNP [dm3] 2L_15111873_SNP [dm6]	G	A	1.477e^-4	0.903	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10642940	3L_10642940_SNP [dm3] 3L_10649840_SNP [dm6]	G	A	1.483e^-4	0.903	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10642981	3L_10642981_SNP [dm3] 3L_10649881_SNP [dm6]	A	G	1.483e^-4	0.903	INTRON CG32066
3L	10630326	3L_10630326_SNP [dm3] 3L_10637226_SNP [dm6]	G	A	1.484e^-4	0.903	SYNONYMOUS_CODING E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13742596	2L_13742596_SNP [dm3] 2L_13742596_SNP [dm6]	A	G	1.485e^-4	0.903	INTERGENIC
3L	12487607	3L_12487607_SNP [dm3] 3L_12494507_SNP [dm6]	C	T	1.487e^-4	0.903	DOWNSTREAM CR45682 INTRON CG10657	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11816703	3L_11816703_INS [dm3] 3L_11823603_INS [dm6]	A	ACATCG	1.489e^-4	0.903	DOWNSTREAM snoRNA:Psi18S-920 & 1 other INTRON RpL10Ab	TF binding site mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	1758873	3L_1758873_SNP [dm3] 3L_1758873_SNP [dm6]	C	G	1.493e^-4	0.903	NON_SYNONYMOUS_CODING CG8001 DOWNSTREAM Dhc62B	TF binding site mE1_TFBS_chinmo
3R	18048064	3R_18048064_SNP [dm3] 3R_22222342_SNP [dm6]	G	C	1.497e^-4	0.903	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7293801	3L_7293801_SNP [dm3] 3L_7300701_SNP [dm6]	T	G	1.506e^-4	0.903	INTRON unc-13-4A
3L	10897970	3L_10897970_SNP [dm3] 3L_10904870_SNP [dm6]	C	T	1.511e^-4	0.903	INTERGENIC
2R	10461628	2R_10461628_SNP [dm3] 2R_14574123_SNP [dm6]	C	T	1.519e^-4	0.903	INTRON ttv & 1 other
2L	11756901	2L_11756901_INS [dm3] 2L_11756901_INS [dm6]	C	CCACAC	1.526e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8328279	2R_8328279_SNP [dm3] 2R_12440774_SNP [dm6]	C	T	1.533e^-4	0.903	NON_SYNONYMOUS_CODING CG30334 INTRON Dyb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4745956	2R_4745956_SNP [dm3] 2R_8858451_SNP [dm6]	G	C	1.544e^-4	0.903	INTERGENIC
3L	2659820	3L_2659820_SNP [dm3] 3L_2659820_SNP [dm6]	T	G	1.560e^-4	0.903	SYNONYMOUS_CODING CG33233 INTRON Fife
3L	14742034	3L_14742034_SNP [dm3] 3L_14748934_SNP [dm6]	C	T	1.560e^-4	0.903	SYNONYMOUS_CODING CG42507 UTR_3_PRIME Trl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11805807	3L_11805807_SNP [dm3] 3L_11812707_SNP [dm6]	G	C	1.562e^-4	0.903	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15249591	2L_15249591_SNP [dm3] 2L_15249591_SNP [dm6]	G	A	1.563e^-4	0.903	INTRON dao	TF binding site mE1_TFBS_cad
2L	11303230	2L_11303230_SNP [dm3] 2L_11303230_SNP [dm6]	T	G	1.566e^-4	0.903	INTERGENIC
2R	13861287	2R_13861287_SNP [dm3] 2R_17973782_SNP [dm6]	A	G	1.566e^-4	0.903	INTERGENIC
2L	13263410	2L_13263410_SNP [dm3] 2L_13263410_SNP [dm6]	G	T	1.573e^-4	0.903	INTRON CG44085
2R	19373376	2R_19373376_SNP [dm3] 2R_23485853_SNP [dm6]	G	A	1.580e^-4	0.903	INTRON CG43795
X	15870894	X_15870894_SNP [dm3] X_15976861_SNP [dm6]	T	A	1.593e^-4	0.903	UPSTREAM CG42766 DOWNSTREAM Or13a INTERGENIC
3L	10944397	3L_10944397_SNP [dm3] 3L_10951297_SNP [dm6]	C	A	1.595e^-4	0.903	INTERGENIC
2L	6024643	2L_6024643_SNP [dm3] 2L_6024643_SNP [dm6]	A	C	1.598e^-4	0.903	UPSTREAM CG9107 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	3346581	2R_3346581_SNP [dm3] 2R_7459076_SNP [dm6]	G	T	1.599e^-4	0.903	UPSTREAM Inos DOWNSTREAM CG11141 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18280241	3L_18280241_SNP [dm3] 3L_18287141_SNP [dm6]	A	C	1.602e^-4	0.903	INTERGENIC
3R	4082368	3R_4082368_SNP [dm3] 3R_8256646_SNP [dm6]	C	T	1.608e^-4	0.903	INTRON mtg
3R	25626906	3R_25626906_SNP [dm3] 3R_29801184_SNP [dm6]	C	A	1.609e^-4	0.903	UTR_3_PRIME Ice DOWNSTREAM CG7834	TF binding site mE1_TFBS_cad
2L	17805783	2L_17805783_SNP [dm3] 2L_17805783_SNP [dm6]	T	A	1.616e^-4	0.903	INTRON CadN2
X	3939844	X_3939844_SNP [dm3] X_4045811_SNP [dm6]	T	G	1.619e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7877981	3R_7877981_SNP [dm3] 3R_12052259_SNP [dm6]	G	A	1.625e^-4	0.903	INTERGENIC
3R	22827631	3R_22827631_SNP [dm3] 3R_27001909_SNP [dm6]	C	A	1.628e^-4	0.903	SYNONYMOUS_CODING CG31077 INTRON RYa-R
2L	21979083	2L_21979083_SNP [dm3] 2L_21979083_SNP [dm6]	G	C	1.650e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17180206	2R_17180206_SNP [dm3] 2R_21292701_SNP [dm6]	G	A	1.654e^-4	0.903	SYNONYMOUS_CODING Sgf29 UPSTREAM CG30392	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	17696705	2L_17696705_SNP [dm3] 2L_17696705_SNP [dm6]	C	A	1.670e^-4	0.903	INTRON CadN
2L	16248381	2L_16248381_SNP [dm3] 2L_16248381_SNP [dm6]	C	A	1.675e^-4	0.903	INTRON PRL-1
3L	17701731	3L_17701731_SNP [dm3] 3L_17708631_SNP [dm6]	G	C	1.677e^-4	0.903	INTRON Ccn
3L	10622977	3L_10622977_SNP [dm3] 3L_10629877_SNP [dm6]	G	A	1.678e^-4	0.903	SYNONYMOUS_CODING CG42536 DOWNSTREAM CG42535
3R	10866652	3R_10866652_SNP [dm3] 3R_15040930_SNP [dm6]	C	T	1.699e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19973018	2R_19973018_SNP [dm3] 2R_24085495_SNP [dm6]	C	T	1.706e^-4	0.903	SYNONYMOUS_CODING CG16786	TF binding site mE1_TFBS_sens
3R	8033633	3R_8033633_SNP [dm3] 3R_12207911_SNP [dm6]	C	T	1.712e^-4	0.903	DOWNSTREAM CG4830 INTERGENIC
3L	11667283	3L_11667283_SNP [dm3] 3L_11674183_SNP [dm6]	T	A	1.715e^-4	0.903	INTRON CG32085	TF binding site mE1_TFBS_cad
3L	1758896	3L_1758896_SNP [dm3] 3L_1758896_SNP [dm6]	A	G	1.716e^-4	0.903	NON_SYNONYMOUS_CODING CG8001 DOWNSTREAM Dhc62B	TF binding site mE1_TFBS_chinmo
2R	9496953	2R_9496953_SNP [dm3] 2R_13609448_SNP [dm6]	A	G	1.717e^-4	0.903	UPSTREAM CG12464 INTERGENIC
2R	11717632	2R_11717632_SNP [dm3] 2R_15830127_SNP [dm6]	C	T	1.739e^-4	0.903	INTRON tun & 1 other	TF binding site mE1_TFBS_chinmo
3L	11667328	3L_11667328_SNP [dm3] 3L_11674228_SNP [dm6]	G	T	1.752e^-4	0.903	INTRON CG32085	TF binding site mE1_TFBS_cad
2L	2327729	2L_2327729_SNP [dm3] 2L_2327729_SNP [dm6]	G	A	1.753e^-4	0.903	INTRON CG9967 & 1 other
3R	11936497	3R_11936497_SNP [dm3] 3R_16110775_SNP [dm6]	T	C	1.757e^-4	0.903	INTERGENIC
3L	8390924	3L_8390924_SNP [dm3] 3L_8397824_SNP [dm6]	C	A	1.772e^-4	0.903	UPSTREAM CG7120 INTRON CG7120
2R	20415698	2R_20415698_SNP [dm3] 2R_24528175_SNP [dm6]	C	T	1.774e^-4	0.903	NON_SYNONYMOUS_CODING Brca2
2L	12736929	2L_12736929_SNP [dm3] 2L_12736929_SNP [dm6]	C	T	1.791e^-4	0.903	INTRON MRP
2L	20538497	2L_20538497_SNP [dm3] 2L_20538497_SNP [dm6]	C	T	1.794e^-4	0.903	DOWNSTREAM CR45707 INTERGENIC	TF binding site mE1_TFBS_inv
3R	11990942	3R_11990942_DEL [dm3] 3R_16165220_DEL [dm6]	GCTA	G	1.818e^-4	0.903	INTRON CG6006
2R	19374029	2R_19374029_SNP [dm3] 2R_23486506_SNP [dm6]	G	A	1.819e^-4	0.903	INTRON CG43795	TF binding site mE1_TFBS_chinmo
2R	8231172	2R_8231172_SNP [dm3] 2R_12343667_SNP [dm6]	T	C	1.823e^-4	0.903	INTRON CG8839	TF binding site BDTNP1_TFBS_dl
3L	17685436	3L_17685436_SNP [dm3] 3L_17692336_SNP [dm6]	C	G	1.831e^-4	0.903	INTRON Ccn
2R	9495272	2R_9495272_DEL [dm3] 2R_13607767_DEL [dm6]	TT	T	1.843e^-4	0.903	DOWNSTREAM CG12464 INTERGENIC
3L	11691200	3L_11691200_SNP [dm3] 3L_11698100_SNP [dm6]	C	T	1.845e^-4	0.903	SPLICE_SITE_REGION CG6053 INTRON CG6053	TF binding site mE1_TFBS_HSA
2L	20431235	2L_20431235_SNP [dm3] 2L_20431235_SNP [dm6]	A	G	1.846e^-4	0.903	INTRON CG31688
3R	15199817	3R_15199817_SNP [dm3] 3R_19374095_SNP [dm6]	G	A	1.847e^-4	0.903	SYNONYMOUS_CODING CG3581 DOWNSTREAM CG31404 INTRON Ino80
2L	547678	2L_547678_SNP [dm3] 2L_547678_SNP [dm6]	G	A	1.853e^-4	0.903	SYNONYMOUS_CODING Ets21C DOWNSTREAM nAChRbeta3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18649612	2L_18649612_SNP [dm3] 2L_18649612_SNP [dm6]	G	A	1.857e^-4	0.903	UTR_5_PRIME MESR3 INTRON MESR3
X	9428472	X_9428472_SNP [dm3] X_9534439_SNP [dm6]	G	A	1.859e^-4	0.903	UTR_3_PRIME CG34026 DOWNSTREAM CG34026 INTRON CG32700
2R	9360947	2R_9360947_SNP [dm3] 2R_13473442_SNP [dm6]	G	C	1.862e^-4	0.903	INTRON arr	TF binding site BDTNP1_TFBS_dl
3L	7754171	3L_7754171_SNP [dm3] 3L_7761071_SNP [dm6]	C	T	1.864e^-4	0.903	UTR_5_PRIME Hn UPSTREAM Hn INTRON Hn
3R	11990909	3R_11990909_SNP [dm3] 3R_16165187_SNP [dm6]	A	T	1.867e^-4	0.903	INTRON CG6006
2R	18128360	2R_18128360_SNP [dm3] 2R_22240855_SNP [dm6]	C	T	1.871e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20549274	2L_20549274_SNP [dm3] 2L_20549274_SNP [dm6]	T	C	1.875e^-4	0.903	INTERGENIC
3R	10548757	3R_10548757_SNP [dm3] 3R_14723035_SNP [dm6]	T	A	1.877e^-4	0.903	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	6061820	3L_6061820_INS [dm3] 3L_6068720_INS [dm6]	A	AT	1.880e^-4	0.903	INTRON CG42269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8377747	3L_8377747_SNP [dm3] 3L_8384647_SNP [dm6]	T	C	1.883e^-4	0.903	INTRON ImpE1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3586164	X_3586164_DEL [dm3] X_3692131_DEL [dm6]	GG	G	1.885e^-4	0.903	INTRON Mnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17172192	X_17172192_SNP [dm3] X_17278159_SNP [dm6]	T	C	1.890e^-4	0.903	UPSTREAM f INTRON f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10461652	2R_10461652_SNP [dm3] 2R_14574147_SNP [dm6]	C	T	1.896e^-4	0.903	INTRON ttv & 1 other
3R	11990934	3R_11990934_DEL [dm3] 3R_16165212_DEL [dm6]	TTTTA	T	1.897e^-4	0.903	INTRON CG6006
2R	18854091	2R_18854091_SNP [dm3] 2R_22966568_SNP [dm6]	T	A	1.899e^-4	0.903	INTERGENIC
2R	3737236	2R_3737236_SNP [dm3] 2R_7849731_SNP [dm6]	C	G	1.902e^-4	0.903	INTRON Dgk	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15185218	2L_15185218_SNP [dm3] 2L_15185218_SNP [dm6]	C	T	1.909e^-4	0.903	INTRON CG4168
3L	1769758	3L_1769758_SNP [dm3] 3L_1769758_SNP [dm6]	C	T	1.910e^-4	0.903	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11303268	2L_11303268_SNP [dm3] 2L_11303268_SNP [dm6]	G	A	1.918e^-4	0.903	INTERGENIC
3L	8928766	3L_8928766_SNP [dm3] 3L_8935666_SNP [dm6]	A	T	1.918e^-4	0.903	SYNONYMOUS_CODING CG43783	TF binding site mE1_TFBS_cad
2R	2481506	2R_2481506_SNP [dm3] 2R_6594001_SNP [dm6]	C	T	1.923e^-4	0.903	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11936509	3R_11936509_SNP [dm3] 3R_16110787_SNP [dm6]	G	A	1.934e^-4	0.903	INTERGENIC
2R	18854084	2R_18854084_DEL [dm3] 2R_22966561_DEL [dm6]	AACA	GT	1.936e^-4	0.903	INTERGENIC
3R	3902043	3R_3902043_SNP [dm3] 3R_8076321_SNP [dm6]	A	G	1.939e^-4	0.903	DOWNSTREAM snoRNA:Me18S-G423 INTRON mAChR-B
3R	24678327	3R_24678327_SNP [dm3] 3R_28852605_SNP [dm6]	A	G	1.950e^-4	0.903	INTRON spg
2R	9022763	2R_9022763_SNP [dm3] 2R_13135258_SNP [dm6]	G	T	1.950e^-4	0.903	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
3L	10896613	3L_10896613_SNP [dm3] 3L_10903513_SNP [dm6]	T	C	1.962e^-4	0.903	INTERGENIC
3L	1696857	3L_1696857_SNP [dm3] 3L_1696857_SNP [dm6]	A	T	1.966e^-4	0.903	DOWNSTREAM CG12011 INTRON CG7991
X	18143302	X_18143302_SNP [dm3] X_18249269_SNP [dm6]	A	T	1.975e^-4	0.903	INTERGENIC
2R	4313509	2R_4313509_SNP [dm3] 2R_8426004_SNP [dm6]	C	A	1.976e^-4	0.903	INTRON CSN7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19676612	2L_19676612_SNP [dm3] 2L_19676612_SNP [dm6]	T	C	1.982e^-4	0.903	INTRON Lar
2L	2327760	2L_2327760_SNP [dm3] 2L_2327760_SNP [dm6]	G	A	1.984e^-4	0.903	INTRON CG9967 & 1 other
2R	15016207	2R_15016207_SNP [dm3] 2R_19128702_SNP [dm6]	T	A	1.986e^-4	0.903	UPSTREAM botv INTRON CG15117
2R	17561859	2R_17561859_SNP [dm3] 2R_21674354_SNP [dm6]	T	C	1.990e^-4	0.903	UPSTREAM CG30263 INTERGENIC
X	5237372	X_5237372_SNP [dm3] X_5343339_SNP [dm6]	T	A	1.993e^-4	0.903	INTRON SK
3R	20343282	3R_20343282_SNP [dm3] 3R_24517560_SNP [dm6]	G	A	1.994e^-4	0.903	UPSTREAM Pp1alpha-96A INTRON CG13617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	4925933	2R_4925933_SNP [dm3] 2R_9038428_SNP [dm6]	C	T	1.995e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	1134055	2L_1134055_SNP [dm3] 2L_1134055_SNP [dm6]	C	T	2.005e^-4	0.903	NON_SYNONYMOUS_CODING Iris UPSTREAM CG4577
3R	23472296	3R_23472296_SNP [dm3] 3R_27646574_SNP [dm6]	A	G	2.011e^-4	0.903	INTRON tau	TF binding site BDTNP1_TFBS_prd
2L	14658805	2L_14658805_SNP [dm3] 2L_14658805_SNP [dm6]	T	C	2.012e^-4	0.903	INTRON osp
X	18254260	X_18254260_SNP [dm3] X_18360227_SNP [dm6]	C	T	2.020e^-4	0.903	SYNONYMOUS_CODING CG6106	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9578316	2R_9578316_SNP [dm3] 2R_13690811_SNP [dm6]	T	C	2.026e^-4	0.903	DOWNSTREAM CG6220 INTRON fas
2L	8012474	2L_8012474_SNP [dm3] 2L_8012474_SNP [dm6]	A	C	2.033e^-4	0.903	UPSTREAM Tg INTRON Tg
X	11890341	X_11890341_SNP [dm3] X_11996308_SNP [dm6]	A	T	2.035e^-4	0.903	INTRON fw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18180922	2L_18180922_SNP [dm3] 2L_18180922_SNP [dm6]	T	C	2.041e^-4	0.903	UTR_3_PRIME CG7180 DOWNSTREAM CG7180 INTRON CG42750
2R	20028022	2R_20028022_SNP [dm3] 2R_24140499_SNP [dm6]	G	A	2.043e^-4	0.903	INTRON Dat
X	4261769	X_4261769_SNP [dm3] X_4367736_SNP [dm6]	T	C	2.045e^-4	0.903	SYNONYMOUS_CODING CG3626 DOWNSTREAM mir-983-1 & 2 others	TF binding site mE1_TFBS_sens
3L	10630925	3L_10630925_SNP [dm3] 3L_10637825_SNP [dm6]	A	T	2.045e^-4	0.903	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5935768	3L_5935768_SNP [dm3] 3L_5942668_SNP [dm6]	T	C	2.046e^-4	0.903	INTRON CG33993
2L	2441005	2L_2441005_SNP [dm3] 2L_2441005_SNP [dm6]	T	A	2.050e^-4	0.903	INTRON dpp	regulatory region REDfly_CRMs
2R	9022799	2R_9022799_SNP [dm3] 2R_13135294_SNP [dm6]	A	C	2.050e^-4	0.903	SYNONYMOUS_CODING Cap-G	TF binding site mE1_TFBS_sens
3R	23469176	3R_23469176_SNP [dm3] 3R_27643454_SNP [dm6]	G	T	2.055e^-4	0.903	UPSTREAM mir-1001 INTRON tau
3L	10642934	3L_10642934_SNP [dm3] 3L_10649834_SNP [dm6]	A	G	2.065e^-4	0.903	INTRON CG32066	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10464313	2L_10464313_SNP [dm3] 2L_10464313_SNP [dm6]	A	C	2.070e^-4	0.903	SPLICE_SITE_REGION RluA-1 INTRON RluA-1
3L	14982161	3L_14982161_SNP [dm3] 3L_14989061_SNP [dm6]	A	G	2.083e^-4	0.903	INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	21839352	X_21839352_SNP [dm3] X_22437517_SNP [dm6]	C	G	2.088e^-4	0.903	INTERGENIC
2R	19343516	2R_19343516_SNP [dm3] 2R_23455993_SNP [dm6]	A	T	2.097e^-4	0.903	INTRON CG43795
3L	1769683	3L_1769683_SNP [dm3] 3L_1769683_SNP [dm6]	C	T	2.099e^-4	0.903	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1770082	3L_1770082_SNP [dm3] 3L_1770082_SNP [dm6]	C	T	2.099e^-4	0.903	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8921058	2R_8921058_SNP [dm3] 2R_13033553_SNP [dm6]	A	T	2.106e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14652549	2L_14652549_SNP [dm3] 2L_14652549_SNP [dm6]	G	C	2.109e^-4	0.903	INTRON osp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16401262	X_16401262_SNP [dm3] X_16507229_SNP [dm6]	C	A	2.110e^-4	0.903	INTRON para
2R	19474598	2R_19474598_SNP [dm3] 2R_23587075_SNP [dm6]	C	G	2.113e^-4	0.903	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1872578	2L_1872578_INS [dm3] 2L_1872578_INS [dm6]	C	CC	2.116e^-4	0.903	UPSTREAM CR44075 INTRON CG31663
2R	18854107	2R_18854107_SNP [dm3] 2R_22966584_SNP [dm6]	C	T	2.119e^-4	0.903	INTERGENIC
2L	2313488	2L_2313488_SNP [dm3] 2L_2313488_SNP [dm6]	A	T	2.121e^-4	0.903	INTRON CG9967 & 1 other
2R	16568711	2R_16568711_SNP [dm3] 2R_20681206_SNP [dm6]	C	T	2.126e^-4	0.903	INTERGENIC
3L	17692597	3L_17692597_SNP [dm3] 3L_17699497_SNP [dm6]	T	G	2.128e^-4	0.903	INTRON Ccn
3R	15175967	3R_15175967_DEL [dm3] 3R_19350245_DEL [dm6]	TT	T	2.128e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9578504	2R_9578504_SNP [dm3] 2R_13690999_SNP [dm6]	A	T	2.138e^-4	0.903	DOWNSTREAM CG6220 INTRON fas
3L	10624348	3L_10624348_SNP [dm3] 3L_10631248_SNP [dm6]	G	T	2.140e^-4	0.903	UPSTREAM hay & 1 other INTRON hay & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1759580	3L_1759580_SNP [dm3] 3L_1759580_SNP [dm6]	A	G	2.150e^-4	0.903	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG8001	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4100190	3R_4100190_SNP [dm3] 3R_8274468_SNP [dm6]	G	T	2.153e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5931519	3L_5931519_SNP [dm3] 3L_5938419_SNP [dm6]	C	T	2.156e^-4	0.903	INTRON CG33993
X	5889656	X_5889656_SNP [dm3] X_5995623_SNP [dm6]	C	A	2.163e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8285903	2R_8285903_SNP [dm3] 2R_12398398_SNP [dm6]	A	G	2.163e^-4	0.903	SYNONYMOUS_CODING CG30048
X	13540898	X_13540898_SNP [dm3] X_13646865_SNP [dm6]	T	G	2.170e^-4	0.903	INTRON NFAT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3332258	2R_3332258_SNP [dm3] 2R_7444753_SNP [dm6]	C	G	2.174e^-4	0.903	UTR_5_PRIME CG30503 UTR_3_PRIME kappaB-Ras UPSTREAM CG30503 DOWNSTREAM kappaB-Ras & 1 other
3L	11805534	3L_11805534_SNP [dm3] 3L_11812434_SNP [dm6]	A	G	2.174e^-4	0.903	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5311361	2R_5311361_SNP [dm3] 2R_9423856_SNP [dm6]	T	C	2.183e^-4	0.903	UPSTREAM prel & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18854097	2R_18854097_MNP [dm3] 2R_22966574_MNP [dm6]	AGGA	TTAG	2.192e^-4	0.903	INTERGENIC
2L	4798268	2L_4798268_SNP [dm3] 2L_4798268_SNP [dm6]	G	A	2.202e^-4	0.903	INTRON Clect27
3R	21195687	3R_21195687_SNP [dm3] 3R_25369965_SNP [dm6]	T	C	2.208e^-4	0.903	INTRON Fur1
3L	19095346	3L_19095346_DEL [dm3] 3L_19102246_DEL [dm6]	TAT	T	2.210e^-4	0.903	INTERGENIC
2R	5311365	2R_5311365_SNP [dm3] 2R_9423860_SNP [dm6]	T	C	2.211e^-4	0.903	UPSTREAM prel & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	13765137	3R_13765137_SNP [dm3] 3R_17939415_SNP [dm6]	G	C	2.212e^-4	0.903	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21266672	3R_21266672_SNP [dm3] 3R_25440950_SNP [dm6]	G	A	2.215e^-4	0.903	INTRON Fur1
2R	8166807	2R_8166807_DEL [dm3] 2R_12279302_DEL [dm6]	AA	A	2.225e^-4	0.903	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2L	21869756	2L_21869756_SNP [dm3] 2L_21869756_SNP [dm6]	A	T	2.226e^-4	0.903	DOWNSTREAM CR44920 EXON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20403263	2R_20403263_SNP [dm3] 2R_24515740_SNP [dm6]	T	C	2.236e^-4	0.903	NON_SYNONYMOUS_CODING Ir60b UPSTREAM Letm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
3L	3599804	3L_3599804_SNP [dm3] 3L_3599804_SNP [dm6]	T	C	2.236e^-4	0.903	INTRON Eip63E
2L	314426	2L_314426_SNP [dm3] 2L_314426_SNP [dm6]	G	T	2.248e^-4	0.903	INTRON Plc21C
X	11827141	X_11827141_SNP [dm3] X_11933108_SNP [dm6]	A	G	2.248e^-4	0.903	UTR_3_PRIME cac DOWNSTREAM cac
2L	21900647	2L_21900647_SNP [dm3] 2L_21900647_SNP [dm6]	C	A	2.250e^-4	0.903	INTERGENIC	transposable element FlyBase
X	8642504	X_8642504_SNP [dm3] X_8748471_SNP [dm6]	T	A	2.253e^-4	0.903	INTERGENIC
2R	1622075	2R_1622075_SNP [dm3] 2R_5734570_SNP [dm6]	G	A	2.255e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	497375	2R_497375_SNP [dm3] 2R_4609870_SNP [dm6]	C	T	2.275e^-4	0.903	DOWNSTREAM p120ctn INTERGENIC
3L	4156120	3L_4156120_SNP [dm3] 3L_4156120_SNP [dm6]	G	A	2.277e^-4	0.903	SPLICE_SITE_REGION nab INTRON nab	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10580588	2R_10580588_SNP [dm3] 2R_14693083_SNP [dm6]	T	C	2.279e^-4	0.903	INTRON mspo
2R	12465072	2R_12465072_SNP [dm3] 2R_16577567_SNP [dm6]	G	C	2.280e^-4	0.903	UPSTREAM CG8317 INTERGENIC
3L	21088234	3L_21088234_SNP [dm3] 3L_21095134_SNP [dm6]	A	T	2.283e^-4	0.903	INTRON ko
3R	4077078	3R_4077078_INS [dm3] 3R_8251356_INS [dm6]	G	GCCTTCAATTAAATTCTTGC...	2.285e^-4	0.903	INTRON mtg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4098702	3R_4098702_SNP [dm3] 3R_8272980_SNP [dm6]	A	G	2.288e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs
2R	19373428	2R_19373428_INS [dm3] 2R_23485905_INS [dm6]	A	AT	2.298e^-4	0.903	INTRON CG43795
2L	7093013	2L_7093013_SNP [dm3] 2L_7093013_SNP [dm6]	C	A	2.300e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_inv
2R	8944175	2R_8944175_DEL [dm3] 2R_13056670_DEL [dm6]	AA	A	2.309e^-4	0.903	UTR_3_PRIME Drl-2
X	16859660	X_16859660_SNP [dm3] X_16965627_SNP [dm6]	G	C	2.329e^-4	0.903	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
2L	9447119	2L_9447119_SNP [dm3] 2L_9447119_SNP [dm6]	A	G	2.334e^-4	0.903	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
X	16401587	X_16401587_SNP [dm3] X_16507554_SNP [dm6]	T	C	2.336e^-4	0.903	INTRON para
2L	11697370	2L_11697370_SNP [dm3] 2L_11697370_SNP [dm6]	A	G	2.346e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4410445	2R_4410445_INS [dm3] 2R_8522940_INS [dm6]	G	GGAG	2.352e^-4	0.903	INTRON mtt
3R	3902010	3R_3902010_SNP [dm3] 3R_8076288_SNP [dm6]	A	C	2.356e^-4	0.903	DOWNSTREAM snoRNA:Me18S-G423 INTRON mAChR-B
2L	21216410	2L_21216410_SNP [dm3] 2L_21216410_SNP [dm6]	G	T	2.368e^-4	0.903	SYNONYMOUS_CODING CG8679 INTRON Atg18b
2R	18203460	2R_18203460_SNP [dm3] 2R_22315955_SNP [dm6]	A	G	2.373e^-4	0.903	INTRON CR44758
X	17172194	X_17172194_SNP [dm3] X_17278161_SNP [dm6]	A	C	2.382e^-4	0.903	UPSTREAM f INTRON f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5355149	3L_5355149_SNP [dm3] 3L_5362049_SNP [dm6]	G	A	2.386e^-4	0.903	DOWNSTREAM Uev1A INTRON CG4769
2R	19684219	2R_19684219_SNP [dm3] 2R_23796696_SNP [dm6]	A	G	2.387e^-4	0.903	INTRON CG9850	TF binding site mE1_TFBS_HSA
2L	2520366	2L_2520366_SNP [dm3] 2L_2520366_SNP [dm6]	G	C	2.391e^-4	0.903	INTERGENIC
2R	20133522	2R_20133522_SNP [dm3] 2R_24245999_SNP [dm6]	T	A	2.391e^-4	0.903	INTRON nord	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	366653	2L_366653_DEL [dm3] 2L_366653_DEL [dm6]	ATTAAAATCAATCA...	A	2.395e^-4	0.903	INTERGENIC
2R	8285900	2R_8285900_SNP [dm3] 2R_12398395_SNP [dm6]	G	A	2.410e^-4	0.903	SYNONYMOUS_CODING CG30048
X	10309726	X_10309726_SNP [dm3] X_10415693_SNP [dm6]	C	T	2.412e^-4	0.903	INTRON CG32683
3L	15476592	3L_15476592_DEL [dm3] 3L_15483492_DEL [dm6]	AA	A	2.417e^-4	0.903	DOWNSTREAM Ran-like INTERGENIC
2R	8454003	2R_8454003_SNP [dm3] 2R_12566498_SNP [dm6]	C	A	2.423e^-4	0.903	SYNONYMOUS_CODING Cyp301a1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3514400	X_3514400_INS [dm3] X_3620367_INS [dm6]	A	AA	2.424e^-4	0.903	INTRON AstA-R1
2R	10872115	2R_10872115_SNP [dm3] 2R_14984610_SNP [dm6]	T	G	2.440e^-4	0.903	UPSTREAM tRNA:CR30241 INTRON pcs	TF binding site BDTNP1_TFBS_dl
3L	10632288	3L_10632288_SNP [dm3] 3L_10639188_SNP [dm6]	T	C	2.444e^-4	0.903	UPSTREAM CG18628 INTRON CG8009
2R	5918541	2R_5918541_SNP [dm3] 2R_10031036_SNP [dm6]	C	A	2.448e^-4	0.903	DOWNSTREAM CG12128 INTRON CG1407
3R	21683519	3R_21683519_SNP [dm3] 3R_25857797_SNP [dm6]	T	A	2.448e^-4	0.903	INTRON CG5890	TF binding site BDTNP1_TFBS_hb
2L	20569661	2L_20569661_SNP [dm3] 2L_20569661_SNP [dm6]	G	C	2.459e^-4	0.903	INTRON CR45347
2R	17684027	2R_17684027_SNP [dm3] 2R_21796522_SNP [dm6]	T	A	2.468e^-4	0.903	UTR_5_PRIME CG34204
2R	7943968	2R_7943968_SNP [dm3] 2R_12056463_SNP [dm6]	T	A	2.468e^-4	0.903	UTR_3_PRIME CG44314 INTRON Drep-3
3R	21483885	3R_21483885_SNP [dm3] 3R_25658163_SNP [dm6]	C	T	2.469e^-4	0.903	SYNONYMOUS_CODING Tnks
2R	9578195	2R_9578195_SNP [dm3] 2R_13690690_SNP [dm6]	A	G	2.471e^-4	0.903	INTRON fas
2R	16700029	2R_16700029_SNP [dm3] 2R_20812524_SNP [dm6]	C	G	2.471e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	18655464	3L_18655464_SNP [dm3] 3L_18662364_SNP [dm6]	A	G	2.475e^-4	0.903	INTRON MYPT-75D
3R	13277398	3R_13277398_SNP [dm3] 3R_17451676_SNP [dm6]	T	C	2.477e^-4	0.903	INTERGENIC
3R	4088021	3R_4088021_SNP [dm3] 3R_8262299_SNP [dm6]	G	A	2.484e^-4	0.903	UTR_3_PRIME RpA-70 UPSTREAM CR18228
3R	23379711	3R_23379711_SNP [dm3] 3R_27553989_SNP [dm6]	A	G	2.485e^-4	0.903	INTRON Klp98A
2R	16966045	2R_16966045_SNP [dm3] 2R_21078540_SNP [dm6]	T	G	2.485e^-4	0.903	INTRON Treh
3R	12520344	3R_12520344_SNP [dm3] 3R_16694622_SNP [dm6]	A	G	2.488e^-4	0.903	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3593488	2L_3593488_SNP [dm3] 2L_3593488_SNP [dm6]	C	T	2.488e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_sens
2R	10507329	2R_10507329_SNP [dm3] 2R_14619824_SNP [dm6]	G	C	2.489e^-4	0.903	UTR_3_PRIME CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	395565	2R_395565_SNP [dm3] 2R_4508060_SNP [dm6]	G	T	2.493e^-4	0.903	EXON CR44100
3L	8930349	3L_8930349_SNP [dm3] 3L_8937249_SNP [dm6]	T	C	2.496e^-4	0.903	UTR_3_PRIME orb2 UPSTREAM CG43783 INTRON CG43783
2L	20549178	2L_20549178_SNP [dm3] 2L_20549178_SNP [dm6]	T	G	2.504e^-4	0.903	INTERGENIC
2R	9491983	2R_9491983_SNP [dm3] 2R_13604478_SNP [dm6]	G	T	2.509e^-4	0.903	DOWNSTREAM CG34236 INTERGENIC
3R	23416981	3R_23416981_SNP [dm3] 3R_27591259_SNP [dm6]	A	C	2.512e^-4	0.903	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad
3L	7398960	3L_7398960_SNP [dm3] 3L_7405860_SNP [dm6]	T	A	2.513e^-4	0.903	UPSTREAM pncr015:3L INTERGENIC
2L	20477994	2L_20477994_SNP [dm3] 2L_20477994_SNP [dm6]	T	G	2.526e^-4	0.903	INTRON CR44980 EXON CR43234	TF binding site BDTNP1_TFBS_twi
2R	13782636	2R_13782636_SNP [dm3] 2R_17895131_SNP [dm6]	C	G	2.528e^-4	0.903	SYNONYMOUS_CODING CG14491 UPSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_twi
3R	8128326	3R_8128326_SNP [dm3] 3R_12302604_SNP [dm6]	A	G	2.530e^-4	0.903	UTR_3_PRIME svp
3L	15897868	3L_15897868_SNP [dm3] 3L_15904768_SNP [dm6]	C	T	2.530e^-4	0.903	SYNONYMOUS_CODING sff
2L	2327756	2L_2327756_SNP [dm3] 2L_2327756_SNP [dm6]	T	G	2.535e^-4	0.903	INTRON CG9967 & 1 other
2R	8925103	2R_8925103_SNP [dm3] 2R_13037598_SNP [dm6]	C	T	2.544e^-4	0.903	INTERGENIC
2R	8187578	2R_8187578_SNP [dm3] 2R_12300073_SNP [dm6]	G	A	2.549e^-4	0.903	SYNONYMOUS_CODING CG8850 UTR_3_PRIME CG42700	TF binding site mE1_TFBS_cad
2R	16566258	2R_16566258_SNP [dm3] 2R_20678753_SNP [dm6]	C	T	2.552e^-4	0.903	INTERGENIC
2L	18649602	2L_18649602_SNP [dm3] 2L_18649602_SNP [dm6]	A	C	2.557e^-4	0.903	UTR_5_PRIME MESR3 INTRON MESR3
3R	11986106	3R_11986106_SNP [dm3] 3R_16160384_SNP [dm6]	T	C	2.565e^-4	0.903	INTRON CG6006
3R	9566174	3R_9566174_SNP [dm3] 3R_13740452_SNP [dm6]	C	G	2.569e^-4	0.903	INTRON CG34383
3L	10623733	3L_10623733_SNP [dm3] 3L_10630633_SNP [dm6]	C	T	2.577e^-4	0.903	SYNONYMOUS_CODING CG42535 UPSTREAM CG42536 & 2 others	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
2R	3743417	2R_3743417_SNP [dm3] 2R_7855912_SNP [dm6]	A	C	2.578e^-4	0.903	INTRON Dgk
3R	17766968	3R_17766968_SNP [dm3] 3R_21941246_SNP [dm6]	G	A	2.582e^-4	0.903	INTERGENIC
2L	20316921	2L_20316921_SNP [dm3] 2L_20316921_SNP [dm6]	C	T	2.584e^-4	0.903	INTRON spir EXON CR43606
3L	9619815	3L_9619815_SNP [dm3] 3L_9626715_SNP [dm6]	T	A	2.590e^-4	0.903	DOWNSTREAM Or67b INTRON CG3335	TF binding site mE1_TFBS_inv
3L	12090762	3L_12090762_INS [dm3] 3L_12097662_INS [dm6]	A	AT	2.600e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17406581	2L_17406581_SNP [dm3] 2L_17406581_SNP [dm6]	A	G	2.601e^-4	0.903	SYNONYMOUS_CODING CLIP-190
2R	9953700	2R_9953700_SNP [dm3] 2R_14066195_SNP [dm6]	G	T	2.605e^-4	0.903	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11807328	3L_11807328_SNP [dm3] 3L_11814228_SNP [dm6]	G	A	2.610e^-4	0.903	SYNONYMOUS_CODING CG42255
2L	20549177	2L_20549177_SNP [dm3] 2L_20549177_SNP [dm6]	T	C	2.618e^-4	0.903	INTERGENIC
2L	20549179	2L_20549179_DEL [dm3] 2L_20549179_DEL [dm6]	TTGGCTTCTTATGTTTACG...	T	2.618e^-4	0.903	INTERGENIC
X	17507960	X_17507960_INS [dm3] X_17613927_INS [dm6]	T	TT	2.630e^-4	0.903	INTERGENIC
3R	12935822	3R_12935822_SNP [dm3] 3R_17110100_SNP [dm6]	C	T	2.631e^-4	0.903	INTRON cher	TF binding site mE1_TFBS_cad
2L	12581580	2L_12581580_SNP [dm3] 2L_12581580_SNP [dm6]	G	T	2.635e^-4	0.903	UPSTREAM CR44595 EXON CR44596
3L	7293810	3L_7293810_SNP [dm3] 3L_7300710_SNP [dm6]	A	G	2.636e^-4	0.903	INTRON unc-13-4A
3L	11805699	3L_11805699_SNP [dm3] 3L_11812599_SNP [dm6]	G	A	2.638e^-4	0.903	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5613723	2L_5613723_SNP [dm3] 2L_5613723_SNP [dm6]	C	T	2.643e^-4	0.903	INTRON CG14010
3L	6061729	3L_6061729_SNP [dm3] 3L_6068629_SNP [dm6]	A	G	2.656e^-4	0.903	INTRON CG42269	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13128298	3L_13128298_SNP [dm3] 3L_13135198_SNP [dm6]	T	C	2.659e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	10897505	3L_10897505_DEL [dm3] 3L_10904405_DEL [dm6]	AAAGGA	A	2.659e^-4	0.903	INTERGENIC
3L	11242320	3L_11242320_DEL [dm3] 3L_11249220_DEL [dm6]	AGATGGATA	A	2.662e^-4	0.903	EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	314425	2L_314425_SNP [dm3] 2L_314425_SNP [dm6]	G	T	2.663e^-4	0.903	INTRON Plc21C
3R	19567404	3R_19567404_SNP [dm3] 3R_23741682_SNP [dm6]	C	T	2.663e^-4	0.903	INTRON Hmgcr
3L	17628159	3L_17628159_SNP [dm3] 3L_17635059_SNP [dm6]	T	C	2.666e^-4	0.903	INTRON CG7497
3L	11807304	3L_11807304_SNP [dm3] 3L_11814204_SNP [dm6]	C	T	2.667e^-4	0.903	SYNONYMOUS_CODING CG42255
3L	22854761	3L_22854761_SNP [dm3] 3L_22861661_SNP [dm6]	T	C	2.668e^-4	0.903	DOWNSTREAM CG13239 INTERGENIC
X	13301716	X_13301716_SNP [dm3] X_13407683_SNP [dm6]	G	A	2.669e^-4	0.903	INTRON GstT4
2L	7602294	2L_7602294_SNP [dm3] 2L_7602294_SNP [dm6]	T	C	2.672e^-4	0.903	INTERGENIC
2R	18854078	2R_18854078_INS [dm3] 2R_22966555_INS [dm6]	T	TTTT	2.676e^-4	0.903	INTERGENIC
X	15657292	X_15657292_SNP [dm3] X_15763259_SNP [dm6]	G	T	2.677e^-4	0.903	SYNONYMOUS_CODING CG17209 DOWNSTREAM mRpL3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
X	18723582	X_18723582_SNP [dm3] X_18829549_SNP [dm6]	G	T	2.677e^-4	0.903	UTR_3_PRIME CG42450	TF binding site BDTNP1_TFBS_dl
3L	1759101	3L_1759101_DEL [dm3] 3L_1759101_DEL [dm6]	ATTTTA	A	2.684e^-4	0.903	UTR_3_PRIME CG8001 DOWNSTREAM Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17180185	2R_17180185_SNP [dm3] 2R_21292680_SNP [dm6]	G	A	2.684e^-4	0.903	SYNONYMOUS_CODING Sgf29 UPSTREAM CG30392	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	15897874	3L_15897874_SNP [dm3] 3L_15904774_SNP [dm6]	C	T	2.685e^-4	0.903	SYNONYMOUS_CODING sff
3L	1256178	3L_1256178_SNP [dm3] 3L_1256178_SNP [dm6]	A	T	2.687e^-4	0.903	UPSTREAM CG9134 DOWNSTREAM CG9130 & 1 other INTERGENIC
X	17656401	X_17656401_SNP [dm3] X_17762368_SNP [dm6]	T	C	2.694e^-4	0.903	INTERGENIC
2R	17639245	2R_17639245_SNP [dm3] 2R_21751740_SNP [dm6]	T	C	2.695e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4927567	2R_4927567_SNP [dm3] 2R_9040062_SNP [dm6]	G	A	2.698e^-4	0.903	INTRON Ance-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	15285324	2L_15285324_SNP [dm3] 2L_15285324_SNP [dm6]	G	A	2.705e^-4	0.903	NON_SYNONYMOUS_CODING CG15263
2R	20166205	2R_20166205_SNP [dm3] 2R_24278682_SNP [dm6]	A	G	2.708e^-4	0.903	INTRON nvy	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	11342593	X_11342593_SNP [dm3] X_11448560_SNP [dm6]	C	T	2.718e^-4	0.903	INTRON Evi5	TF binding site BDTNP1_TFBS_dl
2R	19728331	2R_19728331_SNP [dm3] 2R_23840808_SNP [dm6]	C	T	2.732e^-4	0.903	UPSTREAM snoRNA:Psi18S-176 DOWNSTREAM CG5549 & 2 others INTERGENIC
3R	10548444	3R_10548444_SNP [dm3] 3R_14722722_SNP [dm6]	C	T	2.741e^-4	0.903	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16848872	X_16848872_SNP [dm3] X_16954839_SNP [dm6]	T	C	2.744e^-4	0.903	SYNONYMOUS_CODING RhoGAP15B
3R	23422014	3R_23422014_SNP [dm3] 3R_27596292_SNP [dm6]	T	C	2.760e^-4	0.903	UPSTREAM CG5639 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11802527	3L_11802527_SNP [dm3] 3L_11809427_SNP [dm6]	C	T	2.767e^-4	0.903	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad
3L	18652158	3L_18652158_SNP [dm3] 3L_18659058_SNP [dm6]	A	T	2.771e^-4	0.903	INTRON MYPT-75D
X	18143064	X_18143064_SNP [dm3] X_18249031_SNP [dm6]	A	T	2.777e^-4	0.903	INTERGENIC
X	20877606	X_20877606_SNP [dm3] X_21006579_SNP [dm6]	C	T	2.777e^-4	0.903	INTERGENIC
2R	13782591	2R_13782591_SNP [dm3] 2R_17895086_SNP [dm6]	C	T	2.785e^-4	0.903	SYNONYMOUS_CODING CG14491 UPSTREAM CG14492 INTRON Elk	TF binding site BDTNP1_TFBS_twi
2R	2877400	2R_2877400_SNP [dm3] 2R_6989895_SNP [dm6]	G	T	2.792e^-4	0.903	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
2R	19373372	2R_19373372_SNP [dm3] 2R_23485849_SNP [dm6]	C	T	2.796e^-4	0.903	INTRON CG43795
2R	4296540	2R_4296540_SNP [dm3] 2R_8409035_SNP [dm6]	A	G	2.797e^-4	0.903	INTRON CG2121	TF binding site mE1_TFBS_HSA
3L	20949602	3L_20949602_SNP [dm3] 3L_20956502_SNP [dm6]	A	G	2.800e^-4	0.903	SYNONYMOUS_CODING Sems UPSTREAM CG10588
3R	7341678	3R_7341678_SNP [dm3] 3R_11515956_SNP [dm6]	T	G	2.802e^-4	0.903	INTERGENIC
2R	5311411	2R_5311411_SNP [dm3] 2R_9423906_SNP [dm6]	G	A	2.803e^-4	0.903	UPSTREAM prel & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	9566384	3R_9566384_SNP [dm3] 3R_13740662_SNP [dm6]	T	G	2.816e^-4	0.903	INTRON CG34383
X	11657056	X_11657056_DEL [dm3] X_11763023_DEL [dm6]	TTAC	T	2.818e^-4	0.903	DOWNSTREAM CG9360 INTRON m
3L	7837268	3L_7837268_SNP [dm3] 3L_7844168_SNP [dm6]	T	A	2.824e^-4	0.903	INTRON Pdp1	regulatory region REDfly_CRMs
3L	1879981	3L_1879981_SNP [dm3] 3L_1879981_SNP [dm6]	T	G	2.828e^-4	0.903	INTRON CG13937
2R	8166427	2R_8166427_SNP [dm3] 2R_12278922_SNP [dm6]	A	T	2.831e^-4	0.903	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
3L	17686909	3L_17686909_SNP [dm3] 3L_17693809_SNP [dm6]	G	C	2.840e^-4	0.903	INTRON Ccn
2R	3736083	2R_3736083_SNP [dm3] 2R_7848578_SNP [dm6]	T	G	2.845e^-4	0.903	INTRON Dgk
3L	1930583	3L_1930583_SNP [dm3] 3L_1930583_SNP [dm6]	T	A	2.846e^-4	0.903	INTRON Dbx
3R	19173549	3R_19173549_SNP [dm3] 3R_23347827_SNP [dm6]	G	C	2.846e^-4	0.903	UPSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1758852	3L_1758852_SNP [dm3] 3L_1758852_SNP [dm6]	T	G	2.868e^-4	0.903	NON_SYNONYMOUS_CODING CG8001 DOWNSTREAM Dhc62B	TF binding site mE1_TFBS_chinmo
2L	20474764	2L_20474764_SNP [dm3] 2L_20474764_SNP [dm6]	G	A	2.871e^-4	0.903	INTRON CR44980
3L	10889536	3L_10889536_SNP [dm3] 3L_10896436_SNP [dm6]	C	G	2.877e^-4	0.903	INTRON Aps
X	18143334	X_18143334_SNP [dm3] X_18249301_SNP [dm6]	T	A	2.881e^-4	0.903	INTERGENIC
X	11657052	X_11657052_SNP [dm3] X_11763019_SNP [dm6]	T	G	2.886e^-4	0.903	DOWNSTREAM CG9360 INTRON m
2R	6395395	2R_6395395_SNP [dm3] 2R_10507890_SNP [dm6]	T	C	2.887e^-4	0.903	UTR_3_PRIME lola INTRON lola
2L	887969	2L_887969_SNP [dm3] 2L_887969_SNP [dm6]	C	T	2.890e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15634363	3R_15634363_SNP [dm3] 3R_19808641_SNP [dm6]	G	A	2.890e^-4	0.903	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25889039	3R_25889039_SNP [dm3] 3R_30063317_SNP [dm6]	T	C	2.890e^-4	0.903	SYNONYMOUS_CODING sima INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	2012024	2L_2012024_SNP [dm3] 2L_2012024_SNP [dm6]	A	C	2.892e^-4	0.903	INTRON CG4238
3L	16920787	3L_16920787_SNP [dm3] 3L_16927687_SNP [dm6]	C	G	2.894e^-4	0.903	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC
3R	14284708	3R_14284708_SNP [dm3] 3R_18458986_SNP [dm6]	C	T	2.908e^-4	0.903	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17823025	X_17823025_INS [dm3] X_17928992_INS [dm6]	T	TT	2.909e^-4	0.903	UTR_3_PRIME Sh DOWNSTREAM Sh
3L	7294704	3L_7294704_SNP [dm3] 3L_7301604_SNP [dm6]	C	T	2.916e^-4	0.903	INTRON unc-13-4A
3L	9061132	3L_9061132_INS [dm3] 3L_9068032_INS [dm6]	A	ACCA	2.918e^-4	0.903	UTR_3_PRIME CG4911
3L	12527439	3L_12527439_SNP [dm3] 3L_12534339_SNP [dm6]	C	T	2.926e^-4	0.903	UTR_3_PRIME CG34242 UPSTREAM CG10688 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	14088565	X_14088565_SNP [dm3] X_14194532_SNP [dm6]	A	G	2.928e^-4	0.903	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
2L	18154412	2L_18154412_SNP [dm3] 2L_18154412_SNP [dm6]	G	A	2.930e^-4	0.903	UTR_3_PRIME CG17681 UPSTREAM CG15155
2L	5061156	2L_5061156_DEL [dm3] 2L_5061156_DEL [dm6]	TAGAGAGCTTT...	T	2.956e^-4	0.903	UPSTREAM CR45291 INTRON qtc
2L	6554890	2L_6554890_SNP [dm3] 2L_6554890_SNP [dm6]	A	T	2.956e^-4	0.903	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19054458	3R_19054458_SNP [dm3] 3R_23228736_SNP [dm6]	C	A	2.962e^-4	0.903	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6336552	2R_6336552_SNP [dm3] 2R_10449047_SNP [dm6]	C	T	2.962e^-4	0.903	DOWNSTREAM Cyp49a1 INTRON Galphao
3L	10890998	3L_10890998_SNP [dm3] 3L_10897898_SNP [dm6]	T	A	2.966e^-4	0.903	SPLICE_SITE_REGION Aps UTR_5_PRIME Aps INTRON Aps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_zfh1
3L	10891010	3L_10891010_SNP [dm3] 3L_10897910_SNP [dm6]	C	T	2.966e^-4	0.903	START_GAINED Aps UTR_5_PRIME Aps INTRON Aps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_zfh1
2L	22050692	2L_22050692_SNP [dm3] 2L_22050692_SNP [dm6]	C	A	2.974e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_sens
3L	11744229	3L_11744229_SNP [dm3] 3L_11751129_SNP [dm6]	A	T	2.980e^-4	0.903	UPSTREAM Gr68a INTRON CG6024
2L	13935310	2L_13935310_SNP [dm3] 2L_13935310_SNP [dm6]	A	G	2.982e^-4	0.903	UPSTREAM CG16885 INTRON Ance-3
X	20877596	X_20877596_SNP [dm3] X_21006569_SNP [dm6]	T	C	2.986e^-4	0.903	INTERGENIC
2R	16966649	2R_16966649_DEL [dm3] 2R_21079144_DEL [dm6]	CA	G	2.994e^-4	0.903	INTRON Treh
3R	27524544	3R_27524544_SNP [dm3] 3R_31698822_SNP [dm6]	A	C	2.997e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	6395569	2R_6395569_SNP [dm3] 2R_10508064_SNP [dm6]	T	C	2.998e^-4	0.903	UTR_3_PRIME lola INTRON lola	TF binding site mE1_TFBS_cad
3L	8926526	3L_8926526_SNP [dm3] 3L_8933426_SNP [dm6]	G	T	3.001e^-4	0.903	SYNONYMOUS_CODING CG43783
3L	12022694	3L_12022694_SNP [dm3] 3L_12029594_SNP [dm6]	G	T	3.006e^-4	0.903	INTRON rols
3L	11649426	3L_11649426_SNP [dm3] 3L_11656326_SNP [dm6]	C	T	3.009e^-4	0.903	UPSTREAM mir-274 INTRON CG32085
2R	2629940	2R_2629940_SNP [dm3] 2R_6742435_SNP [dm6]	C	T	3.009e^-4	0.903	INTRON phtf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	14765856	2L_14765856_SNP [dm3] 2L_14765856_SNP [dm6]	A	G	3.016e^-4	0.903	UPSTREAM CG4701 INTERGENIC
2L	21123254	2L_21123254_SNP [dm3] 2L_21123254_SNP [dm6]	T	G	3.021e^-4	0.903	INTRON Nhe2
2R	18981097	2R_18981097_SNP [dm3] 2R_23093574_SNP [dm6]	A	T	3.022e^-4	0.903	INTRON CG9876
3L	20976701	3L_20976701_SNP [dm3] 3L_20983601_SNP [dm6]	C	T	3.036e^-4	0.903	INTERGENIC
2R	12788855	2R_12788855_SNP [dm3] 2R_16901350_SNP [dm6]	A	C	3.042e^-4	0.903	SYNONYMOUS_CODING inaC
3L	1690640	3L_1690640_SNP [dm3] 3L_1690640_SNP [dm6]	T	A	3.048e^-4	0.903	INTRON CG7991
2L	20428429	2L_20428429_SNP [dm3] 2L_20428429_SNP [dm6]	T	C	3.048e^-4	0.903	UPSTREAM CG31688 INTRON CG31688	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
X	8889982	X_8889982_SNP [dm3] X_8995949_SNP [dm6]	C	T	3.049e^-4	0.903	INTRON rdgA & 1 other
3L	7628962	3L_7628962_SNP [dm3] 3L_7635862_SNP [dm6]	C	T	3.061e^-4	0.903	INTRON CG33275	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15184204	2L_15184204_SNP [dm3] 2L_15184204_SNP [dm6]	G	A	3.067e^-4	0.903	INTRON CG4168
3L	10632263	3L_10632263_INS [dm3] 3L_10639163_INS [dm6]	T	TT	3.081e^-4	0.903	UPSTREAM CG18628 INTRON CG8009
2L	8554233	2L_8554233_DEL [dm3] 2L_8554233_DEL [dm6]	GGGCAGGC	G	3.087e^-4	0.903	INTRON Sema-1a
X	18143617	X_18143617_SNP [dm3] X_18249584_SNP [dm6]	C	A	3.087e^-4	0.903	INTERGENIC
2L	16241596	2L_16241596_SNP [dm3] 2L_16241596_SNP [dm6]	A	G	3.087e^-4	0.903	UPSTREAM CG42818 DOWNSTREAM CG42817 INTERGENIC
3R	13003339	3R_13003339_SNP [dm3] 3R_17177617_SNP [dm6]	A	C	3.092e^-4	0.903	INTRON Mur89F
3R	15175952	3R_15175952_SNP [dm3] 3R_19350230_SNP [dm6]	C	A	3.099e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20429312	2L_20429312_INS [dm3] 2L_20429312_INS [dm6]	T	TATT	3.106e^-4	0.903	INTRON CG31688	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18216633	3L_18216633_SNP [dm3] 3L_18223533_SNP [dm6]	G	A	3.123e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9574957	2R_9574957_SNP [dm3] 2R_13687452_SNP [dm6]	T	A	3.127e^-4	0.903	INTRON fas
X	17951898	X_17951898_SNP [dm3] X_18057865_SNP [dm6]	C	T	3.131e^-4	0.903	INTRON Sh
3L	7753937	3L_7753937_SNP [dm3] 3L_7760837_SNP [dm6]	T	A	3.146e^-4	0.903	UPSTREAM Hn INTRON Hn
2L	6554885	2L_6554885_SNP [dm3] 2L_6554885_SNP [dm6]	A	G	3.162e^-4	0.903	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13293372	3L_13293372_SNP [dm3] 3L_13300272_SNP [dm6]	C	T	3.167e^-4	0.903	UPSTREAM CG43147 INTERGENIC
3L	10636179	3L_10636179_SNP [dm3] 3L_10643079_SNP [dm6]	C	A	3.170e^-4	0.903	UPSTREAM CG14153 DOWNSTREAM CG14154 INTRON CG32066
X	8966947	X_8966947_SNP [dm3] X_9072914_SNP [dm6]	A	T	3.173e^-4	0.903	NON_SYNONYMOUS_CODING CG44325 INTRON CG44325
2L	14658864	2L_14658864_SNP [dm3] 2L_14658864_SNP [dm6]	T	G	3.178e^-4	0.903	INTRON osp
3L	10630897	3L_10630897_SNP [dm3] 3L_10637797_SNP [dm6]	C	A	3.181e^-4	0.903	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4156953	3L_4156953_SNP [dm3] 3L_4156953_SNP [dm6]	A	G	3.183e^-4	0.903	INTRON nab	TF binding site mE1_TFBS_Kr
2R	14357690	2R_14357690_SNP [dm3] 2R_18470185_SNP [dm6]	G	A	3.203e^-4	0.903	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1120361	2R_1120361_SNP [dm3] 2R_5232856_SNP [dm6]	C	T	3.206e^-4	0.903	INTRON Nipped-A	transposable element FlyBase
2L	16916032	2L_16916032_SNP [dm3] 2L_16916032_SNP [dm6]	A	G	3.207e^-4	0.903	NON_SYNONYMOUS_CODING tweek
3L	11880815	3L_11880815_SNP [dm3] 3L_11887715_SNP [dm6]	T	A	3.207e^-4	0.903	UTR_3_PRIME CG5897 INTRON CG44837
3R	18837797	3R_18837797_SNP [dm3] 3R_23012075_SNP [dm6]	A	T	3.221e^-4	0.903	UPSTREAM CG6688 EXON CR44225	TF binding site mE1_TFBS_cad
3R	18837799	3R_18837799_SNP [dm3] 3R_23012077_SNP [dm6]	C	T	3.221e^-4	0.903	UPSTREAM CG6688 EXON CR44225	TF binding site mE1_TFBS_cad
X	3576671	X_3576671_SNP [dm3] X_3682638_SNP [dm6]	C	A	3.223e^-4	0.903	INTRON Mnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18140462	2R_18140462_SNP [dm3] 2R_22252957_SNP [dm6]	T	C	3.223e^-4	0.903	INTRON dve
2L	13809811	2L_13809811_SNP [dm3] 2L_13809811_SNP [dm6]	G	A	3.226e^-4	0.903	UTR_3_PRIME adat & 1 other DOWNSTREAM adat
2L	15292732	2L_15292732_SNP [dm3] 2L_15292732_SNP [dm6]	T	G	3.227e^-4	0.903	SPLICE_SITE_REGION ms_2_35Ci UPSTREAM CG15260 INTRON ms_2_35Ci
2L	20549202	2L_20549202_DEL [dm3] 2L_20549202_DEL [dm6]	ACCAACATCAGC...	T	3.229e^-4	0.903	INTERGENIC
2R	7830848	2R_7830848_DEL [dm3] 2R_11943343_DEL [dm6]	ATA	A	3.232e^-4	0.903	INTRON CG13188
2L	3877956	2L_3877956_SNP [dm3] 2L_3877956_SNP [dm6]	C	T	3.238e^-4	0.903	INTRON capu
X	4339607	X_4339607_SNP [dm3] X_4445574_SNP [dm6]	G	A	3.241e^-4	0.903	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	3284789	3L_3284789_SNP [dm3] 3L_3284789_SNP [dm6]	A	G	3.253e^-4	0.903	INTRON CG12017
3L	3284795	3L_3284795_SNP [dm3] 3L_3284795_SNP [dm6]	G	C	3.253e^-4	0.903	INTRON CG12017
3L	6061838	3L_6061838_INS [dm3] 3L_6068738_INS [dm6]	C	CT	3.257e^-4	0.903	INTRON CG42269	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7605149	3L_7605149_SNP [dm3] 3L_7612049_SNP [dm6]	T	C	3.263e^-4	0.903	INTRON CG33275
3L	10625297	3L_10625297_SNP [dm3] 3L_10632197_SNP [dm6]	C	G	3.274e^-4	0.903	NON_SYNONYMOUS_CODING hay INTRON CG34001	TF binding site mE1_TFBS_sens
3L	1768725	3L_1768725_SNP [dm3] 3L_1768725_SNP [dm6]	C	T	3.283e^-4	0.903	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13745731	2R_13745731_SNP [dm3] 2R_17858226_SNP [dm6]	A	C	3.285e^-4	0.903	INTRON olf186-F
3R	2818704	3R_2818704_SNP [dm3] 3R_6992982_SNP [dm6]	T	C	3.286e^-4	0.903	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14020590	2L_14020590_SNP [dm3] 2L_14020590_SNP [dm6]	T	G	3.291e^-4	0.903	UPSTREAM NimC3 DOWNSTREAM CR44849 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18725322	3L_18725322_SNP [dm3] 3L_18732222_SNP [dm6]	T	C	3.291e^-4	0.903	INTERGENIC
3L	4062115	3L_4062115_SNP [dm3] 3L_4062115_SNP [dm6]	A	T	3.293e^-4	0.903	UPSTREAM dib DOWNSTREAM CG18869 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11366265	3L_11366265_SNP [dm3] 3L_11373165_SNP [dm6]	C	G	3.297e^-4	0.903	INTERGENIC
3L	1771930	3L_1771930_SNP [dm3] 3L_1771930_SNP [dm6]	G	T	3.303e^-4	0.903	UTR_3_PRIME CG13933 UPSTREAM Dhc62B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14442879	3R_14442879_SNP [dm3] 3R_18617157_SNP [dm6]	C	T	3.305e^-4	0.903	SYNONYMOUS_CODING CG7695 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18540196	3R_18540196_SNP [dm3] 3R_22714474_SNP [dm6]	T	C	3.309e^-4	0.903	SPLICE_SITE_REGION wge SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad
X	3791081	X_3791081_SNP [dm3] X_3897048_SNP [dm6]	T	C	3.310e^-4	0.903	INTRON CG42541
3L	10630930	3L_10630930_SNP [dm3] 3L_10637830_SNP [dm6]	A	T	3.315e^-4	0.903	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3368264	3L_3368264_SNP [dm3] 3L_3368264_SNP [dm6]	A	T	3.320e^-4	0.903	DOWNSTREAM kst INTERGENIC
2R	8924797	2R_8924797_SNP [dm3] 2R_13037292_SNP [dm6]	C	A	3.322e^-4	0.903	INTERGENIC
2R	12705026	2R_12705026_SNP [dm3] 2R_16817521_SNP [dm6]	A	G	3.322e^-4	0.903	UTR_3_PRIME CG5550 EXON CR43417
2L	19825562	2L_19825562_SNP [dm3] 2L_19825562_SNP [dm6]	A	C	3.336e^-4	0.903	UPSTREAM sick INTRON sick
2R	8385971	2R_8385971_SNP [dm3] 2R_12498466_SNP [dm6]	C	T	3.343e^-4	0.903	INTRON fdl & 1 other
3R	20320001	3R_20320001_SNP [dm3] 3R_24494279_SNP [dm6]	A	G	3.344e^-4	0.903	INTERGENIC
X	19073966	X_19073966_SNP [dm3] X_19179933_SNP [dm6]	A	G	3.373e^-4	0.903	UPSTREAM CG7453 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6148881	2R_6148881_SNP [dm3] 2R_10261376_SNP [dm6]	C	T	3.376e^-4	0.903	DOWNSTREAM CG12911 EXON CR30009
3L	11807220	3L_11807220_SNP [dm3] 3L_11814120_SNP [dm6]	G	T	3.376e^-4	0.903	SYNONYMOUS_CODING CG42255
3L	10881793	3L_10881793_SNP [dm3] 3L_10888693_SNP [dm6]	G	T	3.381e^-4	0.903	INTERGENIC
2L	15181028	2L_15181028_SNP [dm3] 2L_15181028_SNP [dm6]	C	A	3.382e^-4	0.903	INTRON CG4168
2R	2354651	2R_2354651_SNP [dm3] 2R_6467146_SNP [dm6]	C	T	3.384e^-4	0.903	INTERGENIC	transposable element FlyBase
X	20879488	X_20879488_SNP [dm3] X_21008461_SNP [dm6]	A	G	3.390e^-4	0.903	INTERGENIC
2R	2879615	2R_2879615_SNP [dm3] 2R_6992110_SNP [dm6]	C	A	3.391e^-4	0.903	UPSTREAM Tsp42Ea & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3397412	3L_3397412_SNP [dm3] 3L_3397412_SNP [dm6]	A	T	3.395e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	5627477	2L_5627477_DEL [dm3] 2L_5627477_DEL [dm6]	GCCAACTGG	G	3.399e^-4	0.903	INTRON CG31646	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7101991	2R_7101991_SNP [dm3] 2R_11214486_SNP [dm6]	A	G	3.399e^-4	0.903	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13307894	2L_13307894_SNP [dm3] 2L_13307894_SNP [dm6]	T	G	3.403e^-4	0.903	UTR_3_PRIME CG43778 DOWNSTREAM CG16825 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	10893471	3L_10893471_SNP [dm3] 3L_10900371_SNP [dm6]	G	A	3.404e^-4	0.903	INTERGENIC
2R	18856769	2R_18856769_SNP [dm3] 2R_22969246_SNP [dm6]	T	G	3.409e^-4	0.903	INTERGENIC
2L	13865558	2L_13865558_SNP [dm3] 2L_13865558_SNP [dm6]	C	G	3.410e^-4	0.903	DOWNSTREAM CR44848 INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3L	18948611	3L_18948611_SNP [dm3] 3L_18955511_SNP [dm6]	C	A	3.415e^-4	0.903	DOWNSTREAM CG6836 INTERGENIC
2L	22134080	2L_22134080_SNP [dm3] 2L_22134080_SNP [dm6]	G	A	3.416e^-4	0.903	UPSTREAM CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10986285	3R_10986285_SNP [dm3] 3R_15160563_SNP [dm6]	A	T	3.435e^-4	0.903	INTRON Gyc88E
2L	2440990	2L_2440990_DEL [dm3] 2L_2440990_DEL [dm6]	CT	C	3.441e^-4	0.903	INTRON dpp	regulatory region REDfly_CRMs
2L	13263404	2L_13263404_SNP [dm3] 2L_13263404_SNP [dm6]	A	G	3.441e^-4	0.903	INTRON CG44085
2R	14782401	2R_14782401_SNP [dm3] 2R_18894896_SNP [dm6]	G	T	3.449e^-4	0.903	INTRON sano
2R	12225291	2R_12225291_SNP [dm3] 2R_16337786_SNP [dm6]	C	T	3.452e^-4	0.903	UPSTREAM Hmgs INTRON Hmgs
3R	4095379	3R_4095379_SNP [dm3] 3R_8269657_SNP [dm6]	A	T	3.458e^-4	0.903	SYNONYMOUS_CODING CG9630	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22827646	3R_22827646_SNP [dm3] 3R_27001924_SNP [dm6]	T	A	3.461e^-4	0.903	SYNONYMOUS_CODING CG31077 INTRON RYa-R
X	20758152	X_20758152_DEL [dm3] X_20887125_DEL [dm6]	CGTTGAC	C	3.486e^-4	0.903	INTRON shakB
2L	17672239	2L_17672239_SNP [dm3] 2L_17672239_SNP [dm6]	T	C	3.489e^-4	0.903	INTRON CadN
X	14731308	X_14731308_SNP [dm3] X_14837275_SNP [dm6]	G	A	3.496e^-4	0.903	NON_SYNONYMOUS_CODING CG14410 DOWNSTREAM CG14407	TF binding site mE1_TFBS_sens
2R	19022172	2R_19022172_SNP [dm3] 2R_23134649_SNP [dm6]	C	T	3.497e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	18034310	2R_18034310_SNP [dm3] 2R_22146805_SNP [dm6]	T	C	3.517e^-4	0.903	INTRON a
3L	10630891	3L_10630891_SNP [dm3] 3L_10637791_SNP [dm6]	A	C	3.517e^-4	0.903	UTR_5_PRIME E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6554865	2L_6554865_SNP [dm3] 2L_6554865_SNP [dm6]	C	G	3.518e^-4	0.903	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13451216	3R_13451216_SNP [dm3] 3R_17625494_SNP [dm6]	G	C	3.527e^-4	0.903	UPSTREAM tRNA:T:90Ca & 1 other INTRON AttD
3R	8366384	3R_8366384_SNP [dm3] 3R_12540662_SNP [dm6]	C	T	3.532e^-4	0.903	INTRON Octbeta3R
2R	12705031	2R_12705031_SNP [dm3] 2R_16817526_SNP [dm6]	C	T	3.555e^-4	0.903	UTR_3_PRIME CG5550 EXON CR43417
2R	12705033	2R_12705033_SNP [dm3] 2R_16817528_SNP [dm6]	A	T	3.555e^-4	0.903	UTR_3_PRIME CG5550 EXON CR43417
3L	12843532	3L_12843532_SNP [dm3] 3L_12850432_SNP [dm6]	A	T	3.558e^-4	0.903	UPSTREAM CG10948 INTRON Wbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12402217	3L_12402217_SNP [dm3] 3L_12409117_SNP [dm6]	A	T	3.560e^-4	0.903	UPSTREAM CG32103 INTRON CG32103
X	11342987	X_11342987_SNP [dm3] X_11448954_SNP [dm6]	C	G	3.568e^-4	0.903	INTRON Evi5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18485746	2R_18485746_SNP [dm3] 2R_22598241_SNP [dm6]	A	T	3.581e^-4	0.903	INTRON CG4269	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	10003204	2R_10003204_SNP [dm3] 2R_14115699_SNP [dm6]	A	G	3.582e^-4	0.903	INTRON Prosap
3R	3593466	3R_3593466_INS [dm3] 3R_7767744_INS [dm6]	A	AA	3.582e^-4	0.903	INTERGENIC
2L	6553879	2L_6553879_SNP [dm3] 2L_6553879_SNP [dm6]	G	A	3.584e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	22754257	3R_22754257_DEL [dm3] 3R_26928535_DEL [dm6]	AA	A	3.588e^-4	0.903	INTRON sda
3R	4274360	3R_4274360_SNP [dm3] 3R_8448638_SNP [dm6]	A	T	3.589e^-4	0.903	INTRON CG45263
X	6661874	X_6661874_SNP [dm3] X_6767841_SNP [dm6]	C	T	3.635e^-4	0.903	NON_SYNONYMOUS_CODING CG14438	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5071989	2R_5071989_SNP [dm3] 2R_9184484_SNP [dm6]	C	A	3.638e^-4	0.903	INTRON ltd EXON CR44284	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	21166313	3R_21166313_SNP [dm3] 3R_25340591_SNP [dm6]	C	T	3.641e^-4	0.903	DOWNSTREAM CG11902 INTRON rha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21166315	3R_21166315_SNP [dm3] 3R_25340593_SNP [dm6]	C	T	3.641e^-4	0.903	DOWNSTREAM CG11902 INTRON rha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10930420	2L_10930420_SNP [dm3] 2L_10930420_SNP [dm6]	T	C	3.656e^-4	0.903	INTRON dpr2
3L	1949726	3L_1949726_SNP [dm3] 3L_1949726_SNP [dm6]	A	G	3.665e^-4	0.903	SYNONYMOUS_CODING Cnb DOWNSTREAM mv
2R	7077026	2R_7077026_SNP [dm3] 2R_11189521_SNP [dm6]	T	A	3.668e^-4	0.903	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	8168533	2R_8168533_SNP [dm3] 2R_12281028_SNP [dm6]	A	T	3.674e^-4	0.903	INTRON CG42700
3R	12520324	3R_12520324_SNP [dm3] 3R_16694602_SNP [dm6]	A	G	3.674e^-4	0.903	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8421062	3R_8421062_INS [dm3] 3R_12595340_INS [dm6]	G	AATGTC	3.676e^-4	0.903	INTRON Octbeta2R	TF binding site mE1_TFBS_chinmo
X	18144106	X_18144106_SNP [dm3] X_18250073_SNP [dm6]	A	G	3.676e^-4	0.903	INTERGENIC
2L	12581591	2L_12581591_SNP [dm3] 2L_12581591_SNP [dm6]	C	A	3.677e^-4	0.903	UPSTREAM CR44595 EXON CR44596
2L	18400115	2L_18400115_DEL [dm3] 2L_18400115_DEL [dm6]	CTC	C	3.677e^-4	0.903	UPSTREAM CR44486 INTERGENIC
3R	18524087	3R_18524087_INS [dm3] 3R_22698365_INS [dm6]	T	TG	3.689e^-4	0.903	UTR_5_PRIME Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	2470027	3L_2470027_SNP [dm3] 3L_2470027_SNP [dm6]	G	A	3.692e^-4	0.903	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13790170	3R_13790170_SNP [dm3] 3R_17964448_SNP [dm6]	C	T	3.706e^-4	0.903	INTRON cpo
2L	21199142	2L_21199142_SNP [dm3] 2L_21199142_SNP [dm6]	T	C	3.737e^-4	0.903	UTR_3_PRIME CG31624 UPSTREAM Ret DOWNSTREAM CG31624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	21216303	2L_21216303_SNP [dm3] 2L_21216303_SNP [dm6]	C	T	3.737e^-4	0.903	UTR_3_PRIME CG8679 INTRON Atg18b
3L	10859895	3L_10859895_SNP [dm3] 3L_10866795_SNP [dm6]	G	A	3.756e^-4	0.903	INTRON tna
3L	11693194	3L_11693194_SNP [dm3] 3L_11700094_SNP [dm6]	T	G	3.760e^-4	0.903	UTR_3_PRIME CG11658 UPSTREAM CG6053
2L	17716052	2L_17716052_SNP [dm3] 2L_17716052_SNP [dm6]	C	T	3.763e^-4	0.903	INTRON CadN	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	6433924	2R_6433924_SNP [dm3] 2R_10546419_SNP [dm6]	A	G	3.765e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5877068	3L_5877068_SNP [dm3] 3L_5883968_SNP [dm6]	C	G	3.772e^-4	0.903	UTR_3_PRIME CG13287	TF binding site mE1_TFBS_cad
2L	11204917	2L_11204917_SNP [dm3] 2L_11204917_SNP [dm6]	A	G	3.777e^-4	0.903	DOWNSTREAM CR43859 INTERGENIC
3R	17865002	3R_17865002_SNP [dm3] 3R_22039280_SNP [dm6]	G	A	3.777e^-4	0.903	DOWNSTREAM pit INTERGENIC
3R	17865004	3R_17865004_SNP [dm3] 3R_22039282_SNP [dm6]	C	G	3.777e^-4	0.903	DOWNSTREAM pit INTERGENIC
3R	27491102	3R_27491102_SNP [dm3] 3R_31665380_SNP [dm6]	A	G	3.795e^-4	0.903	DOWNSTREAM kek6 INTERGENIC
2R	8925090	2R_8925090_SNP [dm3] 2R_13037585_SNP [dm6]	G	C	3.803e^-4	0.903	INTERGENIC
2R	8925091	2R_8925091_SNP [dm3] 2R_13037586_SNP [dm6]	T	A	3.803e^-4	0.903	INTERGENIC
3L	9103798	3L_9103798_DEL [dm3] 3L_9110698_DEL [dm6]	AGTG	A	3.829e^-4	0.903	INTRON bol
2L	3387776	2L_3387776_SNP [dm3] 2L_3387776_SNP [dm6]	A	T	3.831e^-4	0.903	UPSTREAM CR45301 & 1 other DOWNSTREAM CG42460 INTERGENIC
2R	18859309	2R_18859309_SNP [dm3] 2R_22971786_SNP [dm6]	T	A	3.833e^-4	0.903	INTERGENIC
2R	16837938	2R_16837938_SNP [dm3] 2R_20950433_SNP [dm6]	C	G	3.853e^-4	0.903	INTRON CG33704	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	7902701	2R_7902701_DEL [dm3] 2R_12015196_DEL [dm6]	AA	A	3.856e^-4	0.903	INTRON otk EXON CR44306	TF binding site mE1_TFBS_cad
3R	3741078	3R_3741078_INS [dm3] 3R_7915356_INS [dm6]	T	TT	3.859e^-4	0.903	UTR_3_PRIME CG2678 INTRON CG2678	TF binding site BDTNP1_TFBS_da
3R	14036615	3R_14036615_SNP [dm3] 3R_18210893_SNP [dm6]	C	A	3.869e^-4	0.903	INTRON CG7985
3L	10634059	3L_10634059_SNP [dm3] 3L_10640959_SNP [dm6]	C	T	3.869e^-4	0.903	UTR_3_PRIME CG32066 UPSTREAM CG14154 DOWNSTREAM CG18628
3L	3403794	3L_3403794_SNP [dm3] 3L_3403794_SNP [dm6]	G	A	3.881e^-4	0.903	NON_SYNONYMOUS_CODING sty	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13293666	3L_13293666_SNP [dm3] 3L_13300566_SNP [dm6]	C	T	3.885e^-4	0.903	UPSTREAM CG43147 INTERGENIC
2R	10507400	2R_10507400_SNP [dm3] 2R_14619895_SNP [dm6]	A	G	3.888e^-4	0.903	NON_SYNONYMOUS_CODING CG12863 DOWNSTREAM Sec61beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7793893	3R_7793893_SNP [dm3] 3R_11968171_SNP [dm6]	A	G	3.891e^-4	0.903	UPSTREAM CG12213 INTRON GC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7990558	3L_7990558_SNP [dm3] 3L_7997458_SNP [dm6]	T	G	3.894e^-4	0.903	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	17672841	2L_17672841_SNP [dm3] 2L_17672841_SNP [dm6]	C	T	3.894e^-4	0.903	INTRON CadN
2R	5086960	2R_5086960_SNP [dm3] 2R_9199455_SNP [dm6]	C	T	3.901e^-4	0.903	SYNONYMOUS_CODING unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
3L	18167938	3L_18167938_SNP [dm3] 3L_18174838_SNP [dm6]	G	A	3.904e^-4	0.903	INTRON W	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10930419	2L_10930419_SNP [dm3] 2L_10930419_SNP [dm6]	A	G	3.920e^-4	0.903	INTRON dpr2
3R	10548811	3R_10548811_SNP [dm3] 3R_14723089_SNP [dm6]	A	C	3.921e^-4	0.903	INTRON kibra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	10952092	2R_10952092_SNP [dm3] 2R_15064587_SNP [dm6]	T	C	3.931e^-4	0.903	INTERGENIC
2L	13740013	2L_13740013_SNP [dm3] 2L_13740013_SNP [dm6]	G	A	3.936e^-4	0.903	INTERGENIC
2R	17372210	2R_17372210_SNP [dm3] 2R_21484705_SNP [dm6]	G	T	3.936e^-4	0.903	INTRON Sara	TF binding site mE1_TFBS_cad
3R	9346682	3R_9346682_SNP [dm3] 3R_13520960_SNP [dm6]	A	G	3.941e^-4	0.903	INTERGENIC
X	19253418	X_19253418_INS [dm3] X_19359385_INS [dm6]	T	TT	3.943e^-4	0.903	INTRON kek5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18117607	3L_18117607_SNP [dm3] 3L_18124507_SNP [dm6]	G	A	3.946e^-4	0.903	INTERGENIC
2R	19240709	2R_19240709_SNP [dm3] 2R_23353186_SNP [dm6]	T	A	3.949e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	4346230	2R_4346230_SNP [dm3] 2R_8458725_SNP [dm6]	C	T	3.951e^-4	0.903	UPSTREAM Mal-A4 & 1 other INTERGENIC
3L	16467912	3L_16467912_SNP [dm3] 3L_16474812_SNP [dm6]	C	G	3.952e^-4	0.903	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_inv mE1_TFBS_sens
2R	4312494	2R_4312494_SNP [dm3] 2R_8424989_SNP [dm6]	A	G	3.955e^-4	0.903	INTRON CSN7	TF binding site mE1_TFBS_chinmo
X	17550801	X_17550801_SNP [dm3] X_17656768_SNP [dm6]	G	A	3.957e^-4	0.903	UTR_5_PRIME IntS2 UPSTREAM beta-Spec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21970953	2L_21970953_DEL [dm3] 2L_21970953_DEL [dm6]	CCTCCCCACCCCTTTTCCAT...	C	3.960e^-4	0.903	INTERGENIC
2L	14542327	2L_14542327_INS [dm3] 2L_14542327_INS [dm6]	C	CGTC	3.962e^-4	0.903	INTERGENIC
2L	14963812	2L_14963812_DEL [dm3] 2L_14963812_DEL [dm6]	AA	A	3.964e^-4	0.903	INTRON CG42313
2L	1383961	2L_1383961_SNP [dm3] 2L_1383961_SNP [dm6]	A	T	3.968e^-4	0.903	INTRON lea
2L	2242140	2L_2242140_SNP [dm3] 2L_2242140_SNP [dm6]	A	G	3.975e^-4	0.903	UPSTREAM CG4267 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6395578	2R_6395578_SNP [dm3] 2R_10508073_SNP [dm6]	T	A	3.977e^-4	0.903	UTR_3_PRIME lola INTRON lola	TF binding site mE1_TFBS_cad
X	5602824	X_5602824_SNP [dm3] X_5708791_SNP [dm6]	A	C	3.989e^-4	0.903	UTR_3_PRIME CG33080 DOWNSTREAM CG4096
2R	16567477	2R_16567477_SNP [dm3] 2R_20679972_SNP [dm6]	T	G	3.992e^-4	0.903	INTERGENIC
3L	18103290	3L_18103290_SNP [dm3] 3L_18110190_SNP [dm6]	A	C	3.996e^-4	0.903	SYNONYMOUS_CODING mus304 UPSTREAM CG5147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
X	16847456	X_16847456_SNP [dm3] X_16953423_SNP [dm6]	G	A	3.997e^-4	0.903	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7341284	3R_7341284_DEL [dm3] 3R_11515562_DEL [dm6]	CCCGTCA	C	3.998e^-4	0.903	INTERGENIC
2L	11469730	2L_11469730_SNP [dm3] 2L_11469730_SNP [dm6]	G	A	3.999e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15329317	3R_15329317_SNP [dm3] 3R_19503595_SNP [dm6]	T	C	4.007e^-4	0.903	UPSTREAM Dys INTRON Dys
X	11897333	X_11897333_SNP [dm3] X_12003300_SNP [dm6]	T	G	4.021e^-4	0.903	UPSTREAM fw INTRON fw	TF binding site mE1_TFBS_HSA
2L	13739927	2L_13739927_SNP [dm3] 2L_13739927_SNP [dm6]	A	T	4.022e^-4	0.903	INTERGENIC
3L	5915089	3L_5915089_SNP [dm3] 3L_5921989_SNP [dm6]	T	C	4.024e^-4	0.903	UPSTREAM CG32407 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	8921065	2R_8921065_SNP [dm3] 2R_13033560_SNP [dm6]	T	A	4.027e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	22141325	3R_22141325_SNP [dm3] 3R_26315603_SNP [dm6]	T	A	4.031e^-4	0.903	INTERGENIC
2R	13963152	2R_13963152_SNP [dm3] 2R_18075647_SNP [dm6]	A	C	4.031e^-4	0.903	INTRON CG34386
3L	812511	3L_812511_SNP [dm3] 3L_812511_SNP [dm6]	A	G	4.036e^-4	0.903	UPSTREAM CR44537 INTERGENIC
2R	9248005	2R_9248005_SNP [dm3] 2R_13360500_SNP [dm6]	T	C	4.038e^-4	0.903	INTERGENIC
2L	19941530	2L_19941530_SNP [dm3] 2L_19941530_SNP [dm6]	A	G	4.042e^-4	0.903	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	17405957	2L_17405957_SNP [dm3] 2L_17405957_SNP [dm6]	A	C	4.043e^-4	0.903	SYNONYMOUS_CODING CLIP-190
2R	2878011	2R_2878011_SNP [dm3] 2R_6990506_SNP [dm6]	T	A	4.050e^-4	0.903	INTERGENIC	transposable element FlyBase
X	6086311	X_6086311_SNP [dm3] X_6192278_SNP [dm6]	A	T	4.056e^-4	0.903	INTRON Ca-alpha1T
2L	15249581	2L_15249581_SNP [dm3] 2L_15249581_SNP [dm6]	G	A	4.061e^-4	0.903	INTRON dao	TF binding site mE1_TFBS_cad
2L	2249031	2L_2249031_SNP [dm3] 2L_2249031_SNP [dm6]	G	A	4.062e^-4	0.903	INTERGENIC
2L	6290868	2L_6290868_SNP [dm3] 2L_6290868_SNP [dm6]	A	C	4.069e^-4	0.903	INTRON Ddr
3R	22827344	3R_22827344_SNP [dm3] 3R_27001622_SNP [dm6]	G	C	4.075e^-4	0.903	NON_SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
3L	17686942	3L_17686942_SNP [dm3] 3L_17693842_SNP [dm6]	T	C	4.076e^-4	0.903	INTRON Ccn
2R	18153554	2R_18153554_SNP [dm3] 2R_22266049_SNP [dm6]	T	C	4.091e^-4	0.903	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10930425	2L_10930425_SNP [dm3] 2L_10930425_SNP [dm6]	A	G	4.094e^-4	0.903	INTRON dpr2
3L	11753523	3L_11753523_SNP [dm3] 3L_11760423_SNP [dm6]	A	C	4.094e^-4	0.903	INTRON CG6024
2L	15093997	2L_15093997_SNP [dm3] 2L_15093997_SNP [dm6]	T	A	4.096e^-4	0.903	INTRON CG15270
2L	15402625	2L_15402625_INS [dm3] 2L_15402625_INS [dm6]	T	TT	4.100e^-4	0.903	INTERGENIC
X	3489653	X_3489653_SNP [dm3] X_3595620_SNP [dm6]	G	C	4.103e^-4	0.903	INTRON AstA-R1
2L	22013641	2L_22013641_SNP [dm3] 2L_22013641_SNP [dm6]	T	A	4.104e^-4	0.903	INTERGENIC
3L	4021975	3L_4021975_SNP [dm3] 3L_4021975_SNP [dm6]	G	A	4.107e^-4	0.903	NON_SYNONYMOUS_CODING Mul1 DOWNSTREAM fd64A & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9495503	2R_9495503_SNP [dm3] 2R_13607998_SNP [dm6]	G	A	4.115e^-4	0.903	DOWNSTREAM CG12464 INTERGENIC
2R	18981100	2R_18981100_SNP [dm3] 2R_23093577_SNP [dm6]	A	T	4.118e^-4	0.903	INTRON CG9876
2L	5826605	2L_5826605_SNP [dm3] 2L_5826605_SNP [dm6]	G	A	4.131e^-4	0.903	INTRON TrissinR
3R	21269130	3R_21269130_SNP [dm3] 3R_25443408_SNP [dm6]	C	A	4.146e^-4	0.903	INTRON Fur1
3R	21269153	3R_21269153_SNP [dm3] 3R_25443431_SNP [dm6]	C	A	4.146e^-4	0.903	INTRON Fur1
2L	3314226	2L_3314226_SNP [dm3] 2L_3314226_SNP [dm6]	A	G	4.152e^-4	0.903	INTRON CG3277
3L	7399711	3L_7399711_SNP [dm3] 3L_7406611_SNP [dm6]	A	T	4.159e^-4	0.903	EXON pncr015:3L
2R	20133504	2R_20133504_SNP [dm3] 2R_24245981_SNP [dm6]	G	A	4.160e^-4	0.903	INTRON nord	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15184782	2L_15184782_DEL [dm3] 2L_15184782_DEL [dm6]	GCTGGTGTG	G	4.162e^-4	0.903	INTRON CG4168
3L	4899759	3L_4899759_SNP [dm3] 3L_4899759_SNP [dm6]	A	T	4.162e^-4	0.903	INTRON CG13704
3L	11804610	3L_11804610_DEL [dm3] 3L_11811510_DEL [dm6]	AGTATATTCATATCTATAGT...	A	4.164e^-4	0.903	INTRON CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13740308	2L_13740308_SNP [dm3] 2L_13740308_SNP [dm6]	G	A	4.179e^-4	0.903	INTERGENIC
3L	1765771	3L_1765771_SNP [dm3] 3L_1765771_SNP [dm6]	C	T	4.185e^-4	0.903	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12705021	2R_12705021_SNP [dm3] 2R_16817516_SNP [dm6]	G	T	4.196e^-4	0.903	UTR_3_PRIME CG5550 DOWNSTREAM CR43417
2R	16966653	2R_16966653_SNP [dm3] 2R_21079148_SNP [dm6]	G	T	4.202e^-4	0.903	INTRON Treh
2L	4133780	2L_4133780_SNP [dm3] 2L_4133780_SNP [dm6]	C	A	4.206e^-4	0.903	INTERGENIC
3R	7371518	3R_7371518_SNP [dm3] 3R_11545796_SNP [dm6]	C	G	4.207e^-4	0.903	INTERGENIC
3R	4103804	3R_4103804_SNP [dm3] 3R_8278082_SNP [dm6]	T	C	4.211e^-4	0.903	UTR_5_PRIME ato	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19433471	3R_19433471_SNP [dm3] 3R_23607749_SNP [dm6]	G	A	4.218e^-4	0.903	INTRON CG31145	TF binding site mE1_TFBS_cad
3L	7399866	3L_7399866_SNP [dm3] 3L_7406766_SNP [dm6]	G	A	4.222e^-4	0.903	DOWNSTREAM pncr015:3L INTERGENIC
X	4840785	X_4840785_SNP [dm3] X_4946752_SNP [dm6]	T	A	4.224e^-4	0.903	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11744192	3L_11744192_SNP [dm3] 3L_11751092_SNP [dm6]	G	T	4.232e^-4	0.903	UPSTREAM Gr68a INTRON CG6024
2R	2624276	2R_2624276_SNP [dm3] 2R_6736771_SNP [dm6]	C	T	4.237e^-4	0.903	INTRON l_2_01289
2L	4707025	2L_4707025_SNP [dm3] 2L_4707025_SNP [dm6]	T	G	4.248e^-4	0.903	INTRON CG34351
3L	13067417	3L_13067417_SNP [dm3] 3L_13074317_SNP [dm6]	A	G	4.254e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18981090	2R_18981090_SNP [dm3] 2R_23093567_SNP [dm6]	A	G	4.272e^-4	0.903	INTRON CG9876
3R	12668451	3R_12668451_SNP [dm3] 3R_16842729_SNP [dm6]	T	A	4.275e^-4	0.903	INTRON iab-8
2R	10233086	2R_10233086_SNP [dm3] 2R_14345581_SNP [dm6]	A	G	4.281e^-4	0.903	INTRON Shroom
3L	20942622	3L_20942622_SNP [dm3] 3L_20949522_SNP [dm6]	G	T	4.281e^-4	0.903	UPSTREAM fng DOWNSTREAM CR45243 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	3790462	3R_3790462_SNP [dm3] 3R_7964740_SNP [dm6]	T	C	4.285e^-4	0.903	INTRON dsx
3L	21043390	3L_21043390_SNP [dm3] 3L_21050290_SNP [dm6]	G	A	4.288e^-4	0.903	INTRON siz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17614208	2R_17614208_SNP [dm3] 2R_21726703_SNP [dm6]	T	C	4.288e^-4	0.903	DOWNSTREAM CR44750 INTERGENIC
2L	6554899	2L_6554899_SNP [dm3] 2L_6554899_SNP [dm6]	C	T	4.293e^-4	0.903	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4339668	X_4339668_SNP [dm3] X_4445635_SNP [dm6]	A	T	4.297e^-4	0.903	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	26524748	3R_26524748_SNP [dm3] 3R_30699026_SNP [dm6]	G	C	4.300e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	14364907	X_14364907_SNP [dm3] X_14470874_SNP [dm6]	A	G	4.305e^-4	0.903	INTERGENIC
2R	19375840	2R_19375840_SNP [dm3] 2R_23488317_SNP [dm6]	T	A	4.307e^-4	0.903	INTRON CG43795
2R	19375845	2R_19375845_SNP [dm3] 2R_23488322_SNP [dm6]	A	T	4.307e^-4	0.903	INTRON CG43795
X	9502227	X_9502227_SNP [dm3] X_9608194_SNP [dm6]	C	G	4.308e^-4	0.903	NON_SYNONYMOUS_CODING Aats-lys UPSTREAM CG42797	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15410448	2R_15410448_INS [dm3] 2R_19522943_INS [dm6]	T	TTACTCATT	4.311e^-4	0.903	UTR_3_PRIME sm DOWNSTREAM sm
3L	16906624	3L_16906624_SNP [dm3] 3L_16913524_SNP [dm6]	C	T	4.311e^-4	0.903	INTRON Lmpt
2L	13881770	2L_13881770_SNP [dm3] 2L_13881770_SNP [dm6]	C	T	4.312e^-4	0.903	INTRON CenG1A
2L	21887176	2L_21887176_SNP [dm3] 2L_21887176_SNP [dm6]	T	A	4.312e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21669215	3R_21669215_SNP [dm3] 3R_25843493_SNP [dm6]	C	G	4.315e^-4	0.903	UPSTREAM CR45653 DOWNSTREAM alpha4GT2 INTERGENIC
2R	5692057	2R_5692057_SNP [dm3] 2R_9804552_SNP [dm6]	G	T	4.315e^-4	0.903	INTRON CG1688
2R	5692058	2R_5692058_SNP [dm3] 2R_9804553_SNP [dm6]	C	T	4.315e^-4	0.903	INTRON CG1688
2R	4007481	2R_4007481_SNP [dm3] 2R_8119976_SNP [dm6]	C	T	4.318e^-4	0.903	INTRON Asap
2L	17672856	2L_17672856_SNP [dm3] 2L_17672856_SNP [dm6]	G	A	4.325e^-4	0.903	INTRON CadN
3R	18836496	3R_18836496_SNP [dm3] 3R_23010774_SNP [dm6]	C	T	4.327e^-4	0.903	UPSTREAM CG34375 INTERGENIC
3L	11480006	3L_11480006_SNP [dm3] 3L_11486906_SNP [dm6]	A	T	4.329e^-4	0.903	UPSTREAM chrb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
2R	5405478	2R_5405478_SNP [dm3] 2R_9517973_SNP [dm6]	C	A	4.337e^-4	0.903	INTRON brp
2R	4416148	2R_4416148_SNP [dm3] 2R_8528643_SNP [dm6]	A	C	4.339e^-4	0.903	INTRON mtt
2L	3376614	2L_3376614_SNP [dm3] 2L_3376614_SNP [dm6]	G	A	4.346e^-4	0.903	SYNONYMOUS_CODING CG9662 UPSTREAM CG15412 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10636175	3L_10636175_SNP [dm3] 3L_10643075_SNP [dm6]	T	C	4.347e^-4	0.903	UPSTREAM CG14153 DOWNSTREAM CG14154 INTRON CG32066
3L	16922013	3L_16922013_SNP [dm3] 3L_16928913_SNP [dm6]	C	T	4.349e^-4	0.903	SYNONYMOUS_CODING CG11905 DOWNSTREAM CG11905	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15040215	2L_15040215_SNP [dm3] 2L_15040215_SNP [dm6]	G	A	4.362e^-4	0.903	SYNONYMOUS_CODING Su_H_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	4739055	2R_4739055_SNP [dm3] 2R_8851550_SNP [dm6]	C	T	4.368e^-4	0.903	INTRON sns	TF binding site mE1_TFBS_inv
3R	26515768	3R_26515768_SNP [dm3] 3R_30690046_SNP [dm6]	C	T	4.368e^-4	0.903	UPSTREAM Spn100A INTERGENIC
3L	20949605	3L_20949605_SNP [dm3] 3L_20956505_SNP [dm6]	G	A	4.371e^-4	0.903	SYNONYMOUS_CODING Sems UPSTREAM CG10588
3L	3526102	3L_3526102_SNP [dm3] 3L_3526102_SNP [dm6]	C	T	4.372e^-4	0.903	INTRON Eip63E
3R	24730319	3R_24730319_SNP [dm3] 3R_28904597_SNP [dm6]	G	A	4.378e^-4	0.903	INTRON Doa
2L	16392003	2L_16392003_SNP [dm3] 2L_16392003_SNP [dm6]	C	T	4.382e^-4	0.903	INTERGENIC
2L	19830047	2L_19830047_SNP [dm3] 2L_19830047_SNP [dm6]	T	C	4.394e^-4	0.903	INTRON sick
2L	15065528	2L_15065528_SNP [dm3] 2L_15065528_SNP [dm6]	G	C	4.396e^-4	0.903	INTRON vas & 1 other
3L	10623622	3L_10623622_SNP [dm3] 3L_10630522_SNP [dm6]	G	T	4.400e^-4	0.903	UPSTREAM CG42536 & 2 others INTRON CG42535	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_run
3R	10986279	3R_10986279_SNP [dm3] 3R_15160557_SNP [dm6]	C	T	4.403e^-4	0.903	INTRON Gyc88E
2L	18154411	2L_18154411_SNP [dm3] 2L_18154411_SNP [dm6]	G	T	4.411e^-4	0.903	UTR_3_PRIME CG17681 UPSTREAM CG15155
3R	17215574	3R_17215574_SNP [dm3] 3R_21389852_SNP [dm6]	G	A	4.415e^-4	0.903	SYNONYMOUS_CODING bap	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17696615	2L_17696615_SNP [dm3] 2L_17696615_SNP [dm6]	G	C	4.420e^-4	0.903	INTRON CadN
3R	15637380	3R_15637380_SNP [dm3] 3R_19811658_SNP [dm6]	A	G	4.424e^-4	0.903	INTRON bnl
2R	11458353	2R_11458353_SNP [dm3] 2R_15570848_SNP [dm6]	G	A	4.429e^-4	0.903	UPSTREAM CG30466 INTRON CG30466 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	4009603	3R_4009603_DEL [dm3] 3R_8183881_DEL [dm6]	TGAA	T	4.433e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8004877	3L_8004877_INS [dm3] 3L_8011777_INS [dm6]	T	TTGT	4.434e^-4	0.903	INTRON nmo
2R	18128604	2R_18128604_SNP [dm3] 2R_22241099_SNP [dm6]	T	A	4.441e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17672860	2L_17672860_SNP [dm3] 2L_17672860_SNP [dm6]	A	G	4.442e^-4	0.903	INTRON CadN
2L	2867057	2L_2867057_SNP [dm3] 2L_2867057_SNP [dm6]	T	C	4.453e^-4	0.903	SYNONYMOUS_CODING CG2991
3L	11406197	3L_11406197_SNP [dm3] 3L_11413097_SNP [dm6]	G	A	4.454e^-4	0.903	INTERGENIC
2R	595559	2R_595559_SNP [dm3] 2R_4708054_SNP [dm6]	G	A	4.459e^-4	0.903	INTRON Nipped-B	transposable element FlyBase
3R	26166701	3R_26166701_SNP [dm3] 3R_30340979_SNP [dm6]	T	C	4.462e^-4	0.903	INTRON hdc
3R	3601802	3R_3601802_SNP [dm3] 3R_7776080_SNP [dm6]	C	G	4.469e^-4	0.903	INTERGENIC
3L	3397193	3L_3397193_SNP [dm3] 3L_3397193_SNP [dm6]	A	T	4.469e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_cad
3L	812531	3L_812531_SNP [dm3] 3L_812531_SNP [dm6]	T	C	4.476e^-4	0.903	UPSTREAM CR44537 INTERGENIC
2L	8645355	2L_8645355_SNP [dm3] 2L_8645355_SNP [dm6]	G	T	4.483e^-4	0.903	INTRON Sema-1a
2L	12581477	2L_12581477_SNP [dm3] 2L_12581477_SNP [dm6]	T	C	4.485e^-4	0.903	UPSTREAM CR44595 EXON CR44596
3R	10865689	3R_10865689_SNP [dm3] 3R_15039967_SNP [dm6]	C	A	4.499e^-4	0.903	DOWNSTREAM CR44944 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17372169	2R_17372169_SNP [dm3] 2R_21484664_SNP [dm6]	G	A	4.501e^-4	0.903	SPLICE_SITE_REGION Sara INTRON Sara	TF binding site mE1_TFBS_cad
2L	11248882	2L_11248882_SNP [dm3] 2L_11248882_SNP [dm6]	G	T	4.504e^-4	0.903	INTRON ab	TF binding site BDTNP1_TFBS_dl
3R	26533414	3R_26533414_SNP [dm3] 3R_30707692_SNP [dm6]	C	G	4.506e^-4	0.903	INTERGENIC
3L	10200398	3L_10200398_SNP [dm3] 3L_10207298_SNP [dm6]	A	G	4.508e^-4	0.903	DOWNSTREAM CR44538 INTERGENIC
3L	9160346	3L_9160346_SNP [dm3] 3L_9167246_SNP [dm6]	T	A	4.527e^-4	0.903	INTRON Rdl
2R	10323394	2R_10323394_SNP [dm3] 2R_14435889_SNP [dm6]	G	A	4.540e^-4	0.903	UPSTREAM Oaz INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11953850	3L_11953850_SNP [dm3] 3L_11960750_SNP [dm6]	C	T	4.549e^-4	0.903	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
2R	585296	2R_585296_SNP [dm3] 2R_4697791_SNP [dm6]	A	C	4.563e^-4	0.903	INTRON Nipped-B
2L	13332952	2L_13332952_SNP [dm3] 2L_13332952_SNP [dm6]	A	G	4.567e^-4	0.903	INTERGENIC
3L	10200403	3L_10200403_SNP [dm3] 3L_10207303_SNP [dm6]	T	C	4.572e^-4	0.903	DOWNSTREAM CR44538 INTERGENIC
2R	3676106	2R_3676106_SNP [dm3] 2R_7788601_SNP [dm6]	C	T	4.584e^-4	0.903	UTR_3_PRIME CanB2 UPSTREAM CG12825 DOWNSTREAM CanB2
2R	19475618	2R_19475618_DEL [dm3] 2R_23588095_DEL [dm6]	TAGCATCAAGCTTTGAGCT...	T	4.585e^-4	0.903	INTRON apt	TF binding site BDTNP1_TFBS_dl
X	20774304	X_20774304_SNP [dm3] X_20903277_SNP [dm6]	T	C	4.587e^-4	0.903	INTRON shakB
2R	20393639	2R_20393639_SNP [dm3] 2R_24506116_SNP [dm6]	C	A	4.590e^-4	0.903	UPSTREAM CG13581 INTERGENIC
X	20877575	X_20877575_SNP [dm3] X_21006548_SNP [dm6]	G	A	4.593e^-4	0.903	INTERGENIC
3L	5934808	3L_5934808_SNP [dm3] 3L_5941708_SNP [dm6]	G	T	4.600e^-4	0.903	INTRON CG33993
2L	18169153	2L_18169153_SNP [dm3] 2L_18169153_SNP [dm6]	G	A	4.600e^-4	0.903	INTRON CG42750	TF binding site mE1_TFBS_inv
X	19446664	X_19446664_DEL [dm3] X_19552631_DEL [dm6]	TC	T	4.612e^-4	0.903	DOWNSTREAM mir-974 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15175853	3R_15175853_SNP [dm3] 3R_19350131_SNP [dm6]	A	T	4.626e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3406317	2L_3406317_SNP [dm3] 2L_3406317_SNP [dm6]	C	T	4.628e^-4	0.903	INTRON pgant2
2L	6830122	2L_6830122_SNP [dm3] 2L_6830122_SNP [dm6]	A	G	4.632e^-4	0.903	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11998173	3R_11998173_SNP [dm3] 3R_16172451_SNP [dm6]	C	T	4.632e^-4	0.903	NON_SYNONYMOUS_CODING CG8925 DOWNSTREAM CG6006
2R	16967427	2R_16967427_SNP [dm3] 2R_21079922_SNP [dm6]	C	T	4.641e^-4	0.903	UPSTREAM Treh INTRON Treh
3L	5934725	3L_5934725_SNP [dm3] 3L_5941625_SNP [dm6]	A	C	4.641e^-4	0.903	INTRON CG33993
2R	6460808	2R_6460808_SNP [dm3] 2R_10573303_SNP [dm6]	C	A	4.643e^-4	0.903	INTRON psq
2R	19375841	2R_19375841_SNP [dm3] 2R_23488318_SNP [dm6]	G	T	4.646e^-4	0.903	INTRON CG43795
3R	22352013	3R_22352013_SNP [dm3] 3R_26526291_SNP [dm6]	G	A	4.647e^-4	0.903	INTRON plum	TF binding site mE1_TFBS_cnc
2R	18854001	2R_18854001_SNP [dm3] 2R_22966478_SNP [dm6]	C	T	4.653e^-4	0.903	INTERGENIC
3L	11804602	3L_11804602_SNP [dm3] 3L_11811502_SNP [dm6]	C	G	4.658e^-4	0.903	INTRON CG42255	TF binding site mE1_TFBS_cad
3L	16020078	3L_16020078_SNP [dm3] 3L_16026978_SNP [dm6]	G	T	4.659e^-4	0.903	INTRON Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10092964	2R_10092964_SNP [dm3] 2R_14205459_SNP [dm6]	C	A	4.659e^-4	0.903	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17646304	3L_17646304_SNP [dm3] 3L_17653204_SNP [dm6]	G	C	4.662e^-4	0.903	INTRON Ndfip & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21604988	2L_21604988_SNP [dm3] 2L_21604988_SNP [dm6]	T	A	4.673e^-4	0.903	INTERGENIC	transposable element FlyBase
2R	12200200	2R_12200200_INS [dm3] 2R_16312695_INS [dm6]	T	TTTAGTGATGCTTATGGATA...	4.676e^-4	0.903	INTRON Nox	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15818807	2R_15818807_SNP [dm3] 2R_19931302_SNP [dm6]	G	C	4.696e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19094784	3R_19094784_SNP [dm3] 3R_23269062_SNP [dm6]	C	A	4.698e^-4	0.903	INTRON orb	TF binding site mE1_TFBS_cad
2R	3729340	2R_3729340_SNP [dm3] 2R_7841835_SNP [dm6]	C	A	4.698e^-4	0.903	INTRON Dgk
X	18143036	X_18143036_SNP [dm3] X_18249003_SNP [dm6]	G	T	4.699e^-4	0.903	INTERGENIC
3L	21813425	3L_21813425_SNP [dm3] 3L_21820325_SNP [dm6]	G	C	4.707e^-4	0.903	INTERGENIC
3L	13797681	3L_13797681_SNP [dm3] 3L_13804581_SNP [dm6]	T	A	4.717e^-4	0.903	INTERGENIC
3L	21761609	3L_21761609_SNP [dm3] 3L_21768509_SNP [dm6]	A	G	4.722e^-4	0.903	INTRON Syn1 & 1 other
2R	16425633	2R_16425633_SNP [dm3] 2R_20538128_SNP [dm6]	A	C	4.729e^-4	0.903	NON_SYNONYMOUS_CODING CG13423 DOWNSTREAM CG13427	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	1767558	3L_1767558_SNP [dm3] 3L_1767558_SNP [dm6]	C	A	4.733e^-4	0.903	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1090501	2L_1090501_SNP [dm3] 2L_1090501_SNP [dm6]	T	C	4.736e^-4	0.903	INTRON CG4629
2R	17034719	2R_17034719_SNP [dm3] 2R_21147214_SNP [dm6]	G	T	4.751e^-4	0.903	SYNONYMOUS_CODING Hmg-2 DOWNSTREAM CG15657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18661636	3L_18661636_SNP [dm3] 3L_18668536_SNP [dm6]	A	T	4.751e^-4	0.903	UTR_3_PRIME Capr DOWNSTREAM CG42495
2L	6555757	2L_6555757_SNP [dm3] 2L_6555757_SNP [dm6]	T	A	4.754e^-4	0.903	UTR_3_PRIME Osm6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16204645	2L_16204645_SNP [dm3] 2L_16204645_SNP [dm6]	G	A	4.755e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	14785541	3R_14785541_SNP [dm3] 3R_18959819_SNP [dm6]	T	C	4.756e^-4	0.903	UTR_5_PRIME CG42613 UTR_3_PRIME CG43732 INTRON CG42613
3L	10624590	3L_10624590_SNP [dm3] 3L_10631490_SNP [dm6]	G	A	4.766e^-4	0.903	UPSTREAM CG42535 INTRON CG34001 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	26525627	3R_26525627_SNP [dm3] 3R_30699905_SNP [dm6]	T	G	4.769e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3378237	2L_3378237_SNP [dm3] 2L_3378237_SNP [dm6]	C	T	4.774e^-4	0.903	SYNONYMOUS_CODING Ptpa
2R	18150557	2R_18150557_SNP [dm3] 2R_22263052_SNP [dm6]	A	G	4.776e^-4	0.903	SYNONYMOUS_CODING dve	TF binding site mE1_TFBS_chinmo
2L	751662	2L_751662_SNP [dm3] 2L_751662_SNP [dm6]	G	A	4.781e^-4	0.903	INTRON GABA-B-R3
3L	812494	3L_812494_SNP [dm3] 3L_812494_SNP [dm6]	C	A	4.781e^-4	0.903	UPSTREAM CR44537 INTERGENIC
3R	4086459	3R_4086459_SNP [dm3] 3R_8260737_SNP [dm6]	G	A	4.782e^-4	0.903	DOWNSTREAM mtg EXON CR18228
2L	17696707	2L_17696707_SNP [dm3] 2L_17696707_SNP [dm6]	G	C	4.783e^-4	0.903	INTRON CadN
X	4339622	X_4339622_SNP [dm3] X_4445589_SNP [dm6]	T	A	4.788e^-4	0.903	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	12090999	3L_12090999_SNP [dm3] 3L_12097899_SNP [dm6]	T	C	4.793e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18147740	X_18147740_SNP [dm3] X_18253707_SNP [dm6]	G	A	4.798e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13740115	2L_13740115_DEL [dm3] 2L_13740115_DEL [dm6]	TTCGTA	T	4.802e^-4	0.903	INTERGENIC
2R	19373413	2R_19373413_SNP [dm3] 2R_23485890_SNP [dm6]	G	T	4.807e^-4	0.903	INTRON CG43795
2L	13332774	2L_13332774_SNP [dm3] 2L_13332774_SNP [dm6]	C	T	4.807e^-4	0.903	INTERGENIC
2R	839328	2R_839328_SNP [dm3] 2R_4951823_SNP [dm6]	T	A	4.808e^-4	0.903	INTRON Ir41a	transposable element FlyBase
X	10418031	X_10418031_SNP [dm3] X_10523998_SNP [dm6]	T	C	4.808e^-4	0.903	INTRON spri
2L	7053072	2L_7053072_SNP [dm3] 2L_7053072_SNP [dm6]	G	A	4.813e^-4	0.903	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9566291	3R_9566291_SNP [dm3] 3R_13740569_SNP [dm6]	T	C	4.813e^-4	0.903	INTRON CG34383
2R	16603668	2R_16603668_SNP [dm3] 2R_20716163_SNP [dm6]	C	G	4.815e^-4	0.903	INTRON dpr
2L	14181051	2L_14181051_SNP [dm3] 2L_14181051_SNP [dm6]	G	A	4.815e^-4	0.903	UPSTREAM CG43333 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19965075	3R_19965075_SNP [dm3] 3R_24139353_SNP [dm6]	G	T	4.816e^-4	0.903	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6061999	3L_6061999_INS [dm3] 3L_6068899_INS [dm6]	G	GTAGCGGCTGTTG...	4.826e^-4	0.903	INTRON CG42269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8149870	2R_8149870_SNP [dm3] 2R_12262365_SNP [dm6]	T	G	4.830e^-4	0.903	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	4071482	3R_4071482_SNP [dm3] 3R_8245760_SNP [dm6]	C	A	4.852e^-4	0.903	UTR_5_PRIME CG18749 UTR_3_PRIME CG33722 DOWNSTREAM CG33722	TF binding site mE1_TFBS_cad
2R	12185407	2R_12185407_SNP [dm3] 2R_16297902_SNP [dm6]	G	C	4.855e^-4	0.903	UTR_3_PRIME CG43265 DOWNSTREAM Atg9
3R	4122079	3R_4122079_SNP [dm3] 3R_8296357_SNP [dm6]	G	A	4.867e^-4	0.903	INTRON CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19988033	2R_19988033_SNP [dm3] 2R_24100510_SNP [dm6]	A	T	4.871e^-4	0.903	SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15410581	2R_15410581_INS [dm3] 2R_19523076_INS [dm6]	A	ACTAA	4.876e^-4	0.903	UTR_3_PRIME sm DOWNSTREAM sm
2R	8285924	2R_8285924_SNP [dm3] 2R_12398419_SNP [dm6]	A	C	4.882e^-4	0.903	SYNONYMOUS_CODING CG30048
2R	19475645	2R_19475645_SNP [dm3] 2R_23588122_SNP [dm6]	G	T	4.886e^-4	0.903	INTRON apt	TF binding site BDTNP1_TFBS_dl
2R	6104265	2R_6104265_SNP [dm3] 2R_10216760_SNP [dm6]	T	C	4.887e^-4	0.903	INTRON Hr46 & 1 other
X	20879665	X_20879665_SNP [dm3] X_21008638_SNP [dm6]	C	A	4.887e^-4	0.903	INTERGENIC
2L	938718	2L_938718_SNP [dm3] 2L_938718_SNP [dm6]	T	C	4.892e^-4	0.903	INTRON CG4341
3L	13096273	3L_13096273_SNP [dm3] 3L_13103173_SNP [dm6]	A	C	4.892e^-4	0.903	INTERGENIC
X	20476089	X_20476089_SNP [dm3] X_20605062_SNP [dm6]	C	T	4.902e^-4	0.903	INTRON RunxA	TF binding site mE1_TFBS_chinmo
2L	18889475	2L_18889475_SNP [dm3] 2L_18889475_SNP [dm6]	G	A	4.914e^-4	0.903	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2R	4415972	2R_4415972_SNP [dm3] 2R_8528467_SNP [dm6]	T	G	4.914e^-4	0.903	INTRON mtt
2R	15016201	2R_15016201_SNP [dm3] 2R_19128696_SNP [dm6]	A	T	4.918e^-4	0.903	UPSTREAM botv INTRON CG15117
3L	3368148	3L_3368148_SNP [dm3] 3L_3368148_SNP [dm6]	G	C	4.919e^-4	0.903	DOWNSTREAM kst INTERGENIC
2L	2440989	2L_2440989_SNP [dm3] 2L_2440989_SNP [dm6]	C	T	4.932e^-4	0.903	INTRON dpp	regulatory region REDfly_CRMs
X	12352204	X_12352204_INS [dm3] X_12458171_INS [dm6]	T	TGCAT	4.932e^-4	0.903	UPSTREAM CG15731 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20430931	2L_20430931_DEL [dm3] 2L_20430931_DEL [dm6]	TATCCTT	T	4.934e^-4	0.903	INTRON CG31688
2L	14020565	2L_14020565_SNP [dm3] 2L_14020565_SNP [dm6]	T	A	4.936e^-4	0.903	UPSTREAM NimC3 DOWNSTREAM CR44849 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19390524	2R_19390524_INS [dm3] 2R_23503001_INS [dm6]	T	TAGTT	4.942e^-4	0.903	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
3L	8974757	3L_8974757_SNP [dm3] 3L_8981657_SNP [dm6]	A	T	4.961e^-4	0.903	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
X	4675762	X_4675762_SNP [dm3] X_4781729_SNP [dm6]	C	T	4.961e^-4	0.903	DOWNSTREAM CG15471 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	4076847	3L_4076847_SNP [dm3] 3L_4076847_SNP [dm6]	C	T	4.963e^-4	0.903	SYNONYMOUS_CODING Gad1
3R	14969985	3R_14969985_SNP [dm3] 3R_19144263_SNP [dm6]	G	A	4.966e^-4	0.903	INTRON Ppcs
2R	1408283	2R_1408283_SNP [dm3] 2R_5520778_SNP [dm6]	A	C	4.969e^-4	0.903	INTRON CG30438
2R	9187633	2R_9187633_DEL [dm3] 2R_13300128_DEL [dm6]	ACCTTAAGACG...	T	4.984e^-4	0.903	INTRON CG17047
2R	9187645	2R_9187645_SNP [dm3] 2R_13300140_SNP [dm6]	C	T	4.984e^-4	0.903	INTRON CG17047

By genomic position
Variant impact
Gene name

grp phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results