DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.696e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.09417
In_3R_K	0.06563
In_3R_Mo	0.03431

Kruskal-Wallis test

Covariate	χ²	p-value
wolba	3.7134	0.054
In_3R_P	6.6712	0.0356
In_3R_K	4.7628	0.0924
In_3R_Mo	4.6619	0.0972

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2348 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	6539726	3R_6539726_INS [dm3] 3R_10714004_INS [dm6]	T	TC	2.972e^-7	0.557	UPSTREAM CG4073 INTERGENIC
3L	8209863	3L_8209863_SNP [dm3] 3L_8216763_SNP [dm6]	A	G	9.810e^-7	0.646	DOWNSTREAM CG8012 INTERGENIC
3L	8209861	3L_8209861_INS [dm3] 3L_8216761_INS [dm6]	A	ATGTACATA	3.087e^-6	0.646	DOWNSTREAM CG8012 INTERGENIC
3L	10453062	3L_10453062_SNP [dm3] 3L_10459962_SNP [dm6]	A	T	3.289e^-6	0.646	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
3L	5542307	3L_5542307_SNP [dm3] 3L_5549207_SNP [dm6]	G	C	3.655e^-6	0.646	INTRON CG10625
X	16164469	X_16164469_SNP [dm3] X_16270436_SNP [dm6]	C	A	3.880e^-6	0.646	SYNONYMOUS_CODING kat80 UPSTREAM Mfe2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16878253	3R_16878253_SNP [dm3] 3R_21052531_SNP [dm6]	A	T	5.207e^-6	0.646	DOWNSTREAM Mvl INTRON Mvl
3L	9961943	3L_9961943_SNP [dm3] 3L_9968843_SNP [dm6]	G	T	5.776e^-6	0.646	UTR_5_PRIME Nc UPSTREAM CG6685	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23026861	3R_23026861_SNP [dm3] 3R_27201139_SNP [dm6]	G	A	6.369e^-6	0.646	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12126989	2L_12126989_SNP [dm3] 2L_12126989_SNP [dm6]	C	T	6.623e^-6	0.646	NON_SYNONYMOUS_CODING CG17211
3R	19389699	3R_19389699_SNP [dm3] 3R_23563977_SNP [dm6]	T	A	6.848e^-6	0.646	INTRON beat-IV
2L	1471481	2L_1471481_SNP [dm3] 2L_1471481_SNP [dm6]	T	C	7.723e^-6	0.646	INTERGENIC	TF binding site mE1_TFBS_sens
2L	3979995	2L_3979995_SNP [dm3] 2L_3979995_SNP [dm6]	A	G	7.960e^-6	0.646	INTRON fred
3R	16321082	3R_16321082_SNP [dm3] 3R_20495360_SNP [dm6]	A	G	7.965e^-6	0.646	INTERGENIC
2L	3980075	2L_3980075_SNP [dm3] 2L_3980075_SNP [dm6]	G	T	8.773e^-6	0.646	INTRON fred
2L	20877925	2L_20877925_SNP [dm3] 2L_20877925_SNP [dm6]	T	G	8.891e^-6	0.646	INTRON sky & 1 other	TF binding site mE1_TFBS_cnc
X	20042639	X_20042639_DEL [dm3] X_20148606_DEL [dm6]	AA	A	9.404e^-6	0.646	INTRON CG9572
3R	16878254	3R_16878254_SNP [dm3] 3R_21052532_SNP [dm6]	T	A	9.416e^-6	0.646	DOWNSTREAM Mvl INTRON Mvl
2L	6106443	2L_6106443_SNP [dm3] 2L_6106443_SNP [dm6]	C	G	9.467e^-6	0.646	INTRON stai
3R	14361680	3R_14361680_SNP [dm3] 3R_18535958_SNP [dm6]	A	T	9.548e^-6	0.646	INTRON fru
3L	10080404	3L_10080404_SNP [dm3] 3L_10087304_SNP [dm6]	A	G	9.985e^-6	0.646	SYNONYMOUS_CODING CG14160 INTRON dpr6	TF binding site mE1_TFBS_cad
3L	16521827	3L_16521827_SNP [dm3] 3L_16528727_SNP [dm6]	T	C	1.008e^-5	0.646	INTRON CG43373
X	16164857	X_16164857_SNP [dm3] X_16270824_SNP [dm6]	G	A	1.027e^-5	0.646	UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu
2L	82497	2L_82497_SNP [dm3] 2L_82497_SNP [dm6]	C	T	1.114e^-5	0.646	UTR_3_PRIME net DOWNSTREAM net
3L	11625548	3L_11625548_SNP [dm3] 3L_11632448_SNP [dm6]	G	T	1.218e^-5	0.646	DOWNSTREAM CR45158 INTRON CG32091
2R	15257523	2R_15257523_SNP [dm3] 2R_19370018_SNP [dm6]	G	A	1.351e^-5	0.646	SYNONYMOUS_CODING CG9416
3R	26129471	3R_26129471_SNP [dm3] 3R_30303749_SNP [dm6]	A	T	1.357e^-5	0.646	INTRON hdc
3L	10080401	3L_10080401_SNP [dm3] 3L_10087301_SNP [dm6]	C	T	1.414e^-5	0.646	SYNONYMOUS_CODING CG14160 INTRON dpr6	TF binding site mE1_TFBS_cad
2L	3979929	2L_3979929_SNP [dm3] 2L_3979929_SNP [dm6]	A	C	1.459e^-5	0.646	INTRON fred
3R	25667014	3R_25667014_SNP [dm3] 3R_29841292_SNP [dm6]	A	G	1.525e^-5	0.646	UPSTREAM Cad99C INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	13127084	X_13127084_SNP [dm3] X_13233051_SNP [dm6]	C	T	1.538e^-5	0.646	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15257501	2R_15257501_SNP [dm3] 2R_19369996_SNP [dm6]	G	A	1.550e^-5	0.646	SYNONYMOUS_CODING CG9416
3L	10895491	3L_10895491_SNP [dm3] 3L_10902391_SNP [dm6]	C	T	1.588e^-5	0.646	INTERGENIC
3L	6472019	3L_6472019_SNP [dm3] 3L_6478919_SNP [dm6]	T	A	1.647e^-5	0.646	INTRON CG42747
2R	15257547	2R_15257547_SNP [dm3] 2R_19370042_SNP [dm6]	T	G	1.663e^-5	0.646	SYNONYMOUS_CODING CG9416
2R	15257583	2R_15257583_SNP [dm3] 2R_19370078_SNP [dm6]	T	C	1.677e^-5	0.646	SYNONYMOUS_CODING CG9416
2R	16931661	2R_16931661_SNP [dm3] 2R_21044156_SNP [dm6]	T	C	1.690e^-5	0.646	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14618653	3R_14618653_SNP [dm3] 3R_18792931_SNP [dm6]	T	A	1.702e^-5	0.646	UPSTREAM CG7720 INTRON CG7720
X	16165143	X_16165143_SNP [dm3] X_16271110_SNP [dm6]	T	A	1.779e^-5	0.646	UPSTREAM Mfe2 INTRON kat80 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	8212651	3L_8212651_SNP [dm3] 3L_8219551_SNP [dm6]	C	A	1.789e^-5	0.646	UPSTREAM CG13674 INTERGENIC
3R	22958993	3R_22958993_SNP [dm3] 3R_27133271_SNP [dm6]	A	T	1.884e^-5	0.646	INTRON CG6051
3L	296943	3L_296943_SNP [dm3] 3L_296943_SNP [dm6]	A	C	1.885e^-5	0.646	UPSTREAM RhoGEF3 INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25887666	3R_25887666_SNP [dm3] 3R_30061944_SNP [dm6]	A	G	1.889e^-5	0.646	UPSTREAM sima INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17227525	2R_17227525_SNP [dm3] 2R_21340020_SNP [dm6]	T	C	1.922e^-5	0.646	SYNONYMOUS_CODING dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26943202	3R_26943202_SNP [dm3] 3R_31117480_SNP [dm6]	A	T	1.923e^-5	0.646	INTERGENIC
2L	2187811	2L_2187811_INS [dm3] 2L_2187811_INS [dm6]	G	GG	1.930e^-5	0.646	DOWNSTREAM tRNA:CR31946 & 1 other EXON CR44066	TF binding site mE1_TFBS_chinmo
3R	25886176	3R_25886176_SNP [dm3] 3R_30060454_SNP [dm6]	C	T	1.930e^-5	0.646	INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8499049	2L_8499049_SNP [dm3] 2L_8499049_SNP [dm6]	G	C	1.954e^-5	0.646	INTRON Dh31
3R	16878239	3R_16878239_SNP [dm3] 3R_21052517_SNP [dm6]	A	G	1.995e^-5	0.646	DOWNSTREAM Mvl INTRON Mvl
3L	6472008	3L_6472008_SNP [dm3] 3L_6478908_SNP [dm6]	A	C	2.056e^-5	0.646	INTRON CG42747
2R	14785634	2R_14785634_SNP [dm3] 2R_18898129_SNP [dm6]	T	C	2.057e^-5	0.646	INTRON sano
3R	22959086	3R_22959086_SNP [dm3] 3R_27133364_SNP [dm6]	G	T	2.063e^-5	0.646	INTRON CG6051
3L	5347689	3L_5347689_SNP [dm3] 3L_5354589_SNP [dm6]	C	T	2.069e^-5	0.646	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20133685	3R_20133685_SNP [dm3] 3R_24307963_SNP [dm6]	C	A	2.073e^-5	0.646	INTRON crb
3L	18756200	3L_18756200_INS [dm3] 3L_18763100_INS [dm6]	GGC	ATTATA	2.091e^-5	0.646	INTRON ftz-f1
X	20042717	X_20042717_SNP [dm3] X_20148684_SNP [dm6]	T	C	2.168e^-5	0.646	INTRON CG9572
2L	3300912	2L_3300912_SNP [dm3] 2L_3300912_SNP [dm6]	T	G	2.209e^-5	0.646	INTRON CG9663
X	16165237	X_16165237_SNP [dm3] X_16271204_SNP [dm6]	A	C	2.223e^-5	0.646	UPSTREAM Mfe2 INTRON kat80 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	16493056	3R_16493056_SNP [dm3] 3R_20667334_SNP [dm6]	T	A	2.279e^-5	0.646	INTERGENIC
2R	15257406	2R_15257406_INS [dm3] 2R_19369901_INS [dm6]	T	TA	2.321e^-5	0.646	INTRON CG9416
3L	5672282	3L_5672282_SNP [dm3] 3L_5679182_SNP [dm6]	A	C	2.331e^-5	0.646	UTR_5_PRIME sif INTRON sif
3L	6472014	3L_6472014_SNP [dm3] 3L_6478914_SNP [dm6]	G	A	2.340e^-5	0.646	INTRON CG42747
X	16165160	X_16165160_DEL [dm3] X_16271127_DEL [dm6]	TGT	T	2.400e^-5	0.646	UPSTREAM Mfe2 INTRON kat80 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	16878201	3R_16878201_SNP [dm3] 3R_21052479_SNP [dm6]	A	T	2.482e^-5	0.646	DOWNSTREAM Mvl INTRON Mvl
3R	26916453	3R_26916453_SNP [dm3] 3R_31090731_SNP [dm6]	T	A	2.521e^-5	0.646	UTR_3_PRIME CG11317
3R	26916454	3R_26916454_SNP [dm3] 3R_31090732_SNP [dm6]	T	A	2.521e^-5	0.646	UTR_3_PRIME CG11317
3R	26916456	3R_26916456_DEL [dm3] 3R_31090734_DEL [dm6]	TTG	T	2.521e^-5	0.646	UTR_3_PRIME CG11317
3R	26916461	3R_26916461_SNP [dm3] 3R_31090739_SNP [dm6]	A	T	2.521e^-5	0.646	UTR_3_PRIME CG11317
3R	26916463	3R_26916463_SNP [dm3] 3R_31090741_SNP [dm6]	A	G	2.521e^-5	0.646	UTR_3_PRIME CG11317
3L	8209874	3L_8209874_SNP [dm3] 3L_8216774_SNP [dm6]	G	A	2.558e^-5	0.646	DOWNSTREAM CG8012 INTERGENIC
2R	15257418	2R_15257418_SNP [dm3] 2R_19369913_SNP [dm6]	A	G	2.615e^-5	0.646	INTRON CG9416
X	13127116	X_13127116_SNP [dm3] X_13233083_SNP [dm6]	A	G	2.631e^-5	0.646	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26020908	3R_26020908_SNP [dm3] 3R_30195186_SNP [dm6]	G	A	2.642e^-5	0.646	SYNONYMOUS_CODING CG15531
3L	10080332	3L_10080332_SNP [dm3] 3L_10087232_SNP [dm6]	A	G	2.671e^-5	0.646	SYNONYMOUS_CODING CG14160 INTRON dpr6
2L	6826581	2L_6826581_SNP [dm3] 2L_6826581_SNP [dm6]	C	T	2.703e^-5	0.646	INTRON sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	11847104	X_11847104_SNP [dm3] X_11953071_SNP [dm6]	T	C	2.767e^-5	0.646	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11778100	X_11778100_SNP [dm3] X_11884067_SNP [dm6]	T	C	2.768e^-5	0.646	INTRON CG10353
3R	26916466	3R_26916466_SNP [dm3] 3R_31090744_SNP [dm6]	C	A	2.778e^-5	0.646	UTR_3_PRIME CG11317
3L	6472044	3L_6472044_SNP [dm3] 3L_6478944_SNP [dm6]	G	T	2.829e^-5	0.646	INTRON CG42747
3L	5542352	3L_5542352_SNP [dm3] 3L_5549252_SNP [dm6]	A	G	2.844e^-5	0.646	INTRON CG10625
3R	7424627	3R_7424627_SNP [dm3] 3R_11598905_SNP [dm6]	T	C	2.874e^-5	0.646	INTRON Jupiter
2L	7246926	2L_7246926_SNP [dm3] 2L_7246926_SNP [dm6]	G	C	2.903e^-5	0.646	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6213965	2L_6213965_SNP [dm3] 2L_6213965_SNP [dm6]	T	C	2.906e^-5	0.646	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	5542342	3L_5542342_INS [dm3] 3L_5549242_INS [dm6]	G	GT	2.910e^-5	0.646	INTRON CG10625
2L	4296137	2L_4296137_SNP [dm3] 2L_4296137_SNP [dm6]	A	G	2.991e^-5	0.646	INTRON tutl
2L	18445089	2L_18445089_SNP [dm3] 2L_18445089_SNP [dm6]	G	A	3.007e^-5	0.646	SYNONYMOUS_CODING ncm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7900460	3L_7900460_SNP [dm3] 3L_7907360_SNP [dm6]	G	A	3.021e^-5	0.646	INTRON pbl
2L	109123	2L_109123_SNP [dm3] 2L_109123_SNP [dm6]	G	A	3.092e^-5	0.646	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4591322	2L_4591322_SNP [dm3] 2L_4591322_SNP [dm6]	G	T	3.110e^-5	0.646	INTRON dp
X	20042708	X_20042708_SNP [dm3] X_20148675_SNP [dm6]	G	A	3.128e^-5	0.646	INTRON CG9572
3L	5357788	3L_5357788_SNP [dm3] 3L_5364688_SNP [dm6]	A	G	3.136e^-5	0.646	INTRON Uev1A	TF binding site mE1_TFBS_inv
2L	4320521	2L_4320521_SNP [dm3] 2L_4320521_SNP [dm6]	C	T	3.234e^-5	0.648	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6539705	3R_6539705_INS [dm3] 3R_10713983_INS [dm6]	C	CGC	3.257e^-5	0.648	UPSTREAM CG4073 INTERGENIC
X	10058673	X_10058673_SNP [dm3] X_10164640_SNP [dm6]	T	C	3.272e^-5	0.648	INTRON CR44894 & 1 other	TF binding site mE1_TFBS_chinmo
X	16163159	X_16163159_SNP [dm3] X_16269126_SNP [dm6]	T	G	3.305e^-5	0.648	SYNONYMOUS_CODING kat80
2R	10827445	2R_10827445_SNP [dm3] 2R_14939940_SNP [dm6]	G	A	3.315e^-5	0.648	UTR_3_PRIME Lap1
2L	14456068	2L_14456068_SNP [dm3] 2L_14456068_SNP [dm6]	T	G	3.370e^-5	0.652	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	17265123	2R_17265123_SNP [dm3] 2R_21377618_SNP [dm6]	C	G	3.510e^-5	0.653	INTRON cv-2
2R	7465354	2R_7465354_SNP [dm3] 2R_11577849_SNP [dm6]	T	C	3.549e^-5	0.653	UTR_3_PRIME tou
X	16164738	X_16164738_SNP [dm3] X_16270705_SNP [dm6]	G	A	3.585e^-5	0.653	UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14959075	2L_14959075_SNP [dm3] 2L_14959075_SNP [dm6]	C	T	3.648e^-5	0.653	INTRON CG42313
3R	16571322	3R_16571322_DEL [dm3] 3R_20745600_DEL [dm6]	TTTGCTCACAGAC...	G	3.735e^-5	0.653	UPSTREAM CG31200 INTRON CG42322
X	7407114	X_7407114_SNP [dm3] X_7513081_SNP [dm6]	T	G	3.745e^-5	0.653	INTRON CG32719
2L	12125882	2L_12125882_SNP [dm3] 2L_12125882_SNP [dm6]	G	A	3.747e^-5	0.653	SYNONYMOUS_CODING CG17211
3L	9352423	3L_9352423_SNP [dm3] 3L_9359323_SNP [dm6]	G	A	3.809e^-5	0.653	SYNONYMOUS_CODING CG32039 UPSTREAM UGP & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	1028378	2L_1028378_SNP [dm3] 2L_1028378_SNP [dm6]	C	G	3.817e^-5	0.653	INTRON IA-2
X	16164999	X_16164999_SNP [dm3] X_16270966_SNP [dm6]	G	C	3.848e^-5	0.653	UTR_5_PRIME Mfe2 UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	21515609	3R_21515609_SNP [dm3] 3R_25689887_SNP [dm6]	T	C	3.879e^-5	0.653	INTERGENIC
3R	25887659	3R_25887659_SNP [dm3] 3R_30061937_SNP [dm6]	A	G	3.959e^-5	0.653	UPSTREAM sima INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12125192	2L_12125192_SNP [dm3] 2L_12125192_SNP [dm6]	T	A	3.968e^-5	0.653	SPLICE_SITE_REGION CG17211 INTRON CG17211
2L	12126915	2L_12126915_SNP [dm3] 2L_12126915_SNP [dm6]	T	C	3.968e^-5	0.653	SYNONYMOUS_CODING CG17211
2L	12126849	2L_12126849_SNP [dm3] 2L_12126849_SNP [dm6]	C	A	4.040e^-5	0.653	SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	26918393	3R_26918393_SNP [dm3] 3R_31092671_SNP [dm6]	G	A	4.086e^-5	0.653	INTRON CG11317
3R	26918421	3R_26918421_SNP [dm3] 3R_31092699_SNP [dm6]	C	G	4.086e^-5	0.653	INTRON CG11317
3R	26942029	3R_26942029_SNP [dm3] 3R_31116307_SNP [dm6]	G	A	4.086e^-5	0.653	INTERGENIC
3R	16571350	3R_16571350_SNP [dm3] 3R_20745628_SNP [dm6]	C	G	4.086e^-5	0.653	UPSTREAM CG31200 INTRON CG42322
X	16162603	X_16162603_SNP [dm3] X_16268570_SNP [dm6]	C	T	4.092e^-5	0.653	NON_SYNONYMOUS_CODING kat80	TF binding site mE1_TFBS_sens
3R	3669681	3R_3669681_SNP [dm3] 3R_7843959_SNP [dm6]	T	C	4.120e^-5	0.653	SYNONYMOUS_CODING CG34384
X	11778161	X_11778161_SNP [dm3] X_11884128_SNP [dm6]	A	G	4.142e^-5	0.653	INTRON CG10353
2L	16203048	2L_16203048_SNP [dm3] 2L_16203048_SNP [dm6]	T	C	4.203e^-5	0.657	UPSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	16164634	X_16164634_SNP [dm3] X_16270601_SNP [dm6]	A	T	4.235e^-5	0.657	UPSTREAM Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12157266	3L_12157266_SNP [dm3] 3L_12164166_SNP [dm6]	T	C	4.356e^-5	0.668	UPSTREAM CG9760 DOWNSTREAM Rh7 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3530299	X_3530299_SNP [dm3] X_3636266_SNP [dm6]	T	A	4.379e^-5	0.668	INTRON AstA-R1
2L	6419667	2L_6419667_SNP [dm3] 2L_6419667_SNP [dm6]	T	A	4.513e^-5	0.673	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26921887	3R_26921887_SNP [dm3] 3R_31096165_SNP [dm6]	C	T	4.558e^-5	0.673	INTRON CG11317
2L	20821401	2L_20821401_SNP [dm3] 2L_20821401_SNP [dm6]	T	C	4.751e^-5	0.673	UPSTREAM CheB38c INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10089082	3L_10089082_SNP [dm3] 3L_10095982_SNP [dm6]	A	C	4.755e^-5	0.673	NON_SYNONYMOUS_CODING CG42825 INTRON dpr6
3L	11660558	3L_11660558_INS [dm3] 3L_11667458_INS [dm6]	T	TT	4.815e^-5	0.673	INTRON CG32085
3L	9866368	3L_9866368_SNP [dm3] 3L_9873268_SNP [dm6]	T	G	4.860e^-5	0.673	INTERGENIC
3L	4194549	3L_4194549_SNP [dm3] 3L_4194549_SNP [dm6]	C	T	4.865e^-5	0.673	UPSTREAM CG43367 DOWNSTREAM tipE INTRON CG43367	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	14618696	3R_14618696_SNP [dm3] 3R_18792974_SNP [dm6]	T	C	4.933e^-5	0.673	UPSTREAM CG7720 INTRON CG7720
2L	20877879	2L_20877879_SNP [dm3] 2L_20877879_SNP [dm6]	A	T	4.938e^-5	0.673	INTRON sky & 1 other	TF binding site mE1_TFBS_cnc
2L	20858055	2L_20858055_SNP [dm3] 2L_20858055_SNP [dm6]	T	G	4.955e^-5	0.673	UPSTREAM CG9336 & 1 other DOWNSTREAM twit INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14381779	3R_14381779_SNP [dm3] 3R_18556057_SNP [dm6]	T	A	4.995e^-5	0.673	INTERGENIC
X	3365407	X_3365407_DEL [dm3] X_3471374_DEL [dm6]	AC	A	5.021e^-5	0.673	INTRON CR44999 & 1 other
X	3365604	X_3365604_SNP [dm3] X_3471571_SNP [dm6]	A	C	5.030e^-5	0.673	INTRON CR44999 & 1 other
3L	11624009	3L_11624009_SNP [dm3] 3L_11630909_SNP [dm6]	G	C	5.048e^-5	0.673	UPSTREAM CG32091 DOWNSTREAM CG18815 INTERGENIC
2L	4296155	2L_4296155_SNP [dm3] 2L_4296155_SNP [dm6]	T	A	5.079e^-5	0.673	INTRON tutl
2R	14116088	2R_14116088_SNP [dm3] 2R_18228583_SNP [dm6]	C	T	5.084e^-5	0.673	EXON CR45310 & 1 other
3R	16571356	3R_16571356_SNP [dm3] 3R_20745634_SNP [dm6]	A	G	5.100e^-5	0.673	UPSTREAM CG31200 INTRON CG42322
3R	7424570	3R_7424570_SNP [dm3] 3R_11598848_SNP [dm6]	A	G	5.101e^-5	0.673	INTRON Jupiter
2L	18454593	2L_18454593_SNP [dm3] 2L_18454593_SNP [dm6]	C	T	5.227e^-5	0.673	UPSTREAM Ntf-2r & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	13880694	3R_13880694_SNP [dm3] 3R_18054972_SNP [dm6]	A	G	5.272e^-5	0.673	INTERGENIC
X	16165253	X_16165253_DEL [dm3] X_16271220_DEL [dm6]	AAA	A	5.298e^-5	0.673	UPSTREAM Mfe2 INTRON kat80 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	12123382	2L_12123382_SNP [dm3] 2L_12123382_SNP [dm6]	A	G	5.376e^-5	0.673	INTRON CG17211
3R	14381761	3R_14381761_SNP [dm3] 3R_18556039_SNP [dm6]	A	C	5.387e^-5	0.673	INTERGENIC
3R	25887644	3R_25887644_SNP [dm3] 3R_30061922_SNP [dm6]	C	T	5.393e^-5	0.673	UPSTREAM sima INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15828275	3R_15828275_SNP [dm3] 3R_20002553_SNP [dm6]	G	A	5.447e^-5	0.673	INTRON Hs6st	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12209427	2L_12209427_SNP [dm3] 2L_12209427_SNP [dm6]	C	T	5.474e^-5	0.673	SYNONYMOUS_CODING CG31759 INTRON aret
3L	23048784	3L_23048784_SNP [dm3] 3L_23055684_SNP [dm6]	T	C	5.497e^-5	0.673	INTERGENIC
2R	12819228	2R_12819228_SNP [dm3] 2R_16931723_SNP [dm6]	C	T	5.507e^-5	0.673	INTRON Pkc53E
3R	23022795	3R_23022795_SNP [dm3] 3R_27197073_SNP [dm6]	G	A	5.631e^-5	0.673	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	18357760	3R_18357760_SNP [dm3] 3R_22532038_SNP [dm6]	A	C	5.663e^-5	0.673	UPSTREAM CG33093 DOWNSTREAM CG5326 INTERGENIC
2L	5186100	2L_5186100_SNP [dm3] 2L_5186100_SNP [dm6]	C	T	5.675e^-5	0.673	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10755899	3L_10755899_SNP [dm3] 3L_10762799_SNP [dm6]	A	G	5.715e^-5	0.673	INTERGENIC
X	20042671	X_20042671_SNP [dm3] X_20148638_SNP [dm6]	T	A	5.728e^-5	0.673	INTRON CG9572
2L	16233622	2L_16233622_SNP [dm3] 2L_16233622_SNP [dm6]	T	C	5.740e^-5	0.673	INTRON CG42817
2R	13513885	2R_13513885_SNP [dm3] 2R_17626380_SNP [dm6]	T	G	5.747e^-5	0.673	INTRON CG10936
3L	8802311	3L_8802311_SNP [dm3] 3L_8809211_SNP [dm6]	A	G	5.784e^-5	0.673	SYNONYMOUS_CODING CG13308 DOWNSTREAM CG32024
X	12404897	X_12404897_SNP [dm3] X_12510864_SNP [dm6]	G	A	5.806e^-5	0.673	INTRON CG2556
X	16171877	X_16171877_SNP [dm3] X_16277844_SNP [dm6]	G	T	5.818e^-5	0.673	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16163787	X_16163787_SNP [dm3] X_16269754_SNP [dm6]	T	G	5.890e^-5	0.673	INTRON kat80
2L	6941442	2L_6941442_SNP [dm3] 2L_6941442_SNP [dm6]	T	C	6.071e^-5	0.673	INTRON CG18304	TF binding site BDTNP1_TFBS_dl
3R	14381776	3R_14381776_SNP [dm3] 3R_18556054_SNP [dm6]	A	T	6.096e^-5	0.673	INTERGENIC
3R	14034497	3R_14034497_SNP [dm3] 3R_18208775_SNP [dm6]	G	C	6.125e^-5	0.673	UPSTREAM CG44158 INTRON CG7985
3R	18172951	3R_18172951_SNP [dm3] 3R_22347229_SNP [dm6]	G	T	6.182e^-5	0.673	INTERGENIC
3L	7710051	3L_7710051_SNP [dm3] 3L_7716951_SNP [dm6]	A	G	6.190e^-5	0.673	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14796601	3R_14796601_SNP [dm3] 3R_18970879_SNP [dm6]	A	G	6.230e^-5	0.673	INTRON CG42613 & 1 other
3L	10093438	3L_10093438_SNP [dm3] 3L_10100338_SNP [dm6]	A	T	6.262e^-5	0.673	SYNONYMOUS_CODING CG42826 INTRON dpr6
2L	11622482	2L_11622482_SNP [dm3] 2L_11622482_SNP [dm6]	C	T	6.268e^-5	0.673	SYNONYMOUS_CODING kek2	TF binding site mE1_TFBS_chinmo
2L	10029163	2L_10029163_SNP [dm3] 2L_10029163_SNP [dm6]	A	G	6.275e^-5	0.673	UTR_3_PRIME CG13127
3R	23022454	3R_23022454_SNP [dm3] 3R_27196732_SNP [dm6]	T	C	6.276e^-5	0.673	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	14299773	3L_14299773_SNP [dm3] 3L_14306673_SNP [dm6]	C	T	6.298e^-5	0.673	INTRON fz
3L	11661144	3L_11661144_SNP [dm3] 3L_11668044_SNP [dm6]	G	A	6.375e^-5	0.673	INTRON CG32085
3L	11330521	3L_11330521_INS [dm3] 3L_11337421_INS [dm6]	A	AAT	6.576e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_sens
3R	18182781	3R_18182781_SNP [dm3] 3R_22357059_SNP [dm6]	T	C	6.624e^-5	0.673	UPSTREAM Sar1 DOWNSTREAM rdhB INTRON Sar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	11654332	X_11654332_DEL [dm3] X_11760299_DEL [dm6]	ATCTTATAG	A	6.679e^-5	0.673	INTRON m
2R	13169182	2R_13169182_SNP [dm3] 2R_17281677_SNP [dm6]	T	C	6.694e^-5	0.673	INTRON mbl
2L	3980074	2L_3980074_SNP [dm3] 2L_3980074_SNP [dm6]	A	C	6.726e^-5	0.673	INTRON fred
3L	11308869	3L_11308869_SNP [dm3] 3L_11315769_SNP [dm6]	A	G	6.740e^-5	0.673	EXON CR44361
3R	10279544	3R_10279544_SNP [dm3] 3R_14453822_SNP [dm6]	G	A	6.763e^-5	0.673	INTRON cv-c
2L	432607	2L_432607_SNP [dm3] 2L_432607_SNP [dm6]	T	A	6.787e^-5	0.673	INTRON ex	TF binding site BDTNP1_TFBS_dl
3R	14381760	3R_14381760_SNP [dm3] 3R_18556038_SNP [dm6]	T	C	6.804e^-5	0.673	INTERGENIC
2L	1034799	2L_1034799_SNP [dm3] 2L_1034799_SNP [dm6]	A	G	6.838e^-5	0.673	UPSTREAM IA-2 INTRON IA-2
3R	16018597	3R_16018597_SNP [dm3] 3R_20192875_SNP [dm6]	A	G	6.842e^-5	0.673	INTERGENIC
3R	16866687	3R_16866687_SNP [dm3] 3R_21040965_SNP [dm6]	C	T	6.861e^-5	0.673	INTRON Dhc93AB
X	19350337	X_19350337_DEL [dm3] X_19456304_DEL [dm6]	AATGTGTGTGT...	A	6.881e^-5	0.673	INTRON kek5
3R	25297708	3R_25297708_SNP [dm3] 3R_29471986_SNP [dm6]	G	T	6.886e^-5	0.673	INTRON Ptp99A
2R	13169185	2R_13169185_SNP [dm3] 2R_17281680_SNP [dm6]	A	T	6.989e^-5	0.673	INTRON mbl
3R	18754626	3R_18754626_SNP [dm3] 3R_22928904_SNP [dm6]	A	T	6.993e^-5	0.673	INTRON klg
3L	9866398	3L_9866398_SNP [dm3] 3L_9873298_SNP [dm6]	A	C	7.049e^-5	0.673	INTERGENIC
2L	20822036	2L_20822036_SNP [dm3] 2L_20822036_SNP [dm6]	T	C	7.108e^-5	0.673	UPSTREAM CG9331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	11777994	X_11777994_SNP [dm3] X_11883961_SNP [dm6]	G	A	7.133e^-5	0.673	INTRON CG10353
2L	10019269	2L_10019269_SNP [dm3] 2L_10019269_SNP [dm6]	C	G	7.220e^-5	0.673	INTERGENIC
2L	11579881	2L_11579881_SNP [dm3] 2L_11579881_SNP [dm6]	A	G	7.251e^-5	0.673	INTERGENIC
2R	9468944	2R_9468944_SNP [dm3] 2R_13581439_SNP [dm6]	T	A	7.319e^-5	0.673	INTRON CG6191 & 1 other	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	15054806	3L_15054806_SNP [dm3] 3L_15061706_SNP [dm6]	G	A	7.319e^-5	0.673	UPSTREAM CG13460 DOWNSTREAM CR43684 INTRON Sytbeta
2R	16532731	2R_16532731_SNP [dm3] 2R_20645226_SNP [dm6]	A	C	7.333e^-5	0.673	SYNONYMOUS_CODING DMAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11024493	3L_11024493_SNP [dm3] 3L_11031393_SNP [dm6]	A	G	7.334e^-5	0.673	INTERGENIC
3R	26927768	3R_26927768_SNP [dm3] 3R_31102046_SNP [dm6]	C	T	7.424e^-5	0.673	UPSTREAM CG15553 INTERGENIC
3R	14783096	3R_14783096_DEL [dm3] 3R_18957374_DEL [dm6]	ATGA	A	7.452e^-5	0.673	INTRON CG42613 & 1 other
2L	20874914	2L_20874914_SNP [dm3] 2L_20874914_SNP [dm6]	T	C	7.460e^-5	0.673	INTRON sky & 1 other EXON CR44981	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	7868115	3L_7868115_SNP [dm3] 3L_7875015_SNP [dm6]	C	T	7.461e^-5	0.673	INTRON CG32365	TF binding site mE1_TFBS_kn
3R	14501739	3R_14501739_SNP [dm3] 3R_18676017_SNP [dm6]	A	T	7.478e^-5	0.673	SYNONYMOUS_CODING CG7705 UTR_3_PRIME CG7705	TF binding site mE1_TFBS_cad
2L	12136205	2L_12136205_SNP [dm3] 2L_12136205_SNP [dm6]	A	G	7.531e^-5	0.673	INTERGENIC
2L	20907769	2L_20907769_SNP [dm3] 2L_20907769_SNP [dm6]	A	G	7.554e^-5	0.673	INTRON sky & 1 other
X	17133321	X_17133321_SNP [dm3] X_17239288_SNP [dm6]	T	C	7.563e^-5	0.673	INTRON f
X	9338576	X_9338576_SNP [dm3] X_9444543_SNP [dm6]	A	G	7.608e^-5	0.673	INTRON mgl
3L	11330511	3L_11330511_SNP [dm3] 3L_11337411_SNP [dm6]	A	T	7.623e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_sens
3R	20496939	3R_20496939_SNP [dm3] 3R_24671217_SNP [dm6]	A	G	7.641e^-5	0.673	INTRON slo
3R	20396943	3R_20396943_SNP [dm3] 3R_24571221_SNP [dm6]	C	T	7.723e^-5	0.673	INTRON CG13624
2L	4364375	2L_4364375_SNP [dm3] 2L_4364375_SNP [dm6]	T	C	7.744e^-5	0.673	UPSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15257577	2R_15257577_SNP [dm3] 2R_19370072_SNP [dm6]	G	A	7.802e^-5	0.673	SYNONYMOUS_CODING CG9416
3R	21515478	3R_21515478_SNP [dm3] 3R_25689756_SNP [dm6]	T	C	7.902e^-5	0.673	INTERGENIC
3R	25886178	3R_25886178_SNP [dm3] 3R_30060456_SNP [dm6]	A	G	7.928e^-5	0.673	INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19624838	X_19624838_SNP [dm3] X_19730805_SNP [dm6]	A	G	7.966e^-5	0.673	UPSTREAM AP-1-2beta DOWNSTREAM CG12531 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3L	10092898	3L_10092898_SNP [dm3] 3L_10099798_SNP [dm6]	A	G	7.972e^-5	0.673	SYNONYMOUS_CODING CG42826 INTRON dpr6
X	17617358	X_17617358_SNP [dm3] X_17723325_SNP [dm6]	A	T	8.057e^-5	0.673	INTRON CG42684	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11662457	3L_11662457_SNP [dm3] 3L_11669357_SNP [dm6]	A	C	8.104e^-5	0.673	INTRON CG32085
2L	11037877	2L_11037877_SNP [dm3] 2L_11037877_SNP [dm6]	A	T	8.118e^-5	0.673	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9468922	2R_9468922_SNP [dm3] 2R_13581417_SNP [dm6]	T	G	8.136e^-5	0.673	INTRON CG6191 & 1 other	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	21900953	2L_21900953_SNP [dm3] 2L_21900953_SNP [dm6]	T	C	8.158e^-5	0.673	INTERGENIC
3L	13219074	3L_13219074_SNP [dm3] 3L_13225974_SNP [dm6]	G	A	8.159e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	11407017	3L_11407017_SNP [dm3] 3L_11413917_SNP [dm6]	A	T	8.166e^-5	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	122643	2L_122643_SNP [dm3] 2L_122643_SNP [dm6]	G	T	8.248e^-5	0.673	UTR_3_PRIME CG3164 UPSTREAM CG4822 & 1 other INTRON CG11455	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13223061	3L_13223061_SNP [dm3] 3L_13229961_SNP [dm6]	G	C	8.366e^-5	0.673	INTRON caps
2R	9715981	2R_9715981_SNP [dm3] 2R_13828476_SNP [dm6]	A	G	8.410e^-5	0.673	UPSTREAM CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl
2L	2496117	2L_2496117_DEL [dm3] 2L_2496117_DEL [dm6]	ATTATTAAAA	A	8.457e^-5	0.673	INTRON oaf
3L	18574941	3L_18574941_DEL [dm3] 3L_18581841_DEL [dm6]	CACTAGCATT	C	8.513e^-5	0.673	INTERGENIC
3R	14381825	3R_14381825_SNP [dm3] 3R_18556103_SNP [dm6]	A	T	8.539e^-5	0.673	INTERGENIC
3L	14371533	3L_14371533_INS [dm3] 3L_14378433_INS [dm6]	C	CC	8.540e^-5	0.673	INTERGENIC
2L	112601	2L_112601_SNP [dm3] 2L_112601_SNP [dm6]	T	A	8.589e^-5	0.673	INTRON Sam-S
2L	12127758	2L_12127758_SNP [dm3] 2L_12127758_SNP [dm6]	C	G	8.594e^-5	0.673	SYNONYMOUS_CODING CG17211
2R	16061058	2R_16061058_SNP [dm3] 2R_20173553_SNP [dm6]	C	T	8.616e^-5	0.673	INTERGENIC
3R	960522	3R_960522_SNP [dm3] 3R_5134800_SNP [dm6]	A	C	8.629e^-5	0.673	INTERGENIC
3L	8535567	3L_8535567_SNP [dm3] 3L_8542467_SNP [dm6]	C	T	8.634e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1199748	3L_1199748_SNP [dm3] 3L_1199748_SNP [dm6]	A	G	8.640e^-5	0.673	DOWNSTREAM Aplip1 INTERGENIC
3R	10876507	3R_10876507_SNP [dm3] 3R_15050785_SNP [dm6]	A	G	8.663e^-5	0.673	INTERGENIC
3R	6501225	3R_6501225_DEL [dm3] 3R_10675503_DEL [dm6]	TCT	T	8.698e^-5	0.673	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	11024491	3L_11024491_SNP [dm3] 3L_11031391_SNP [dm6]	T	C	8.716e^-5	0.673	INTERGENIC
2L	3200441	2L_3200441_SNP [dm3] 2L_3200441_SNP [dm6]	C	T	8.792e^-5	0.673	UPSTREAM CG34393 INTRON CG34393
3R	23396454	3R_23396454_SNP [dm3] 3R_27570732_SNP [dm6]	C	A	8.845e^-5	0.673	INTRON wdb	TF binding site BDTNP1_TFBS_da
2L	842698	2L_842698_SNP [dm3] 2L_842698_SNP [dm6]	A	G	8.875e^-5	0.673	UTR_5_PRIME drongo INTRON drongo
3R	19566701	3R_19566701_SNP [dm3] 3R_23740979_SNP [dm6]	G	T	8.897e^-5	0.673	INTRON Hmgcr
2R	14115890	2R_14115890_SNP [dm3] 2R_18228385_SNP [dm6]	G	T	8.967e^-5	0.673	EXON CR45310 & 1 other
2R	18925118	2R_18925118_SNP [dm3] 2R_23037595_SNP [dm6]	T	G	9.034e^-5	0.673	INTRON twi & 1 other
2L	10025873	2L_10025873_SNP [dm3] 2L_10025873_SNP [dm6]	A	C	9.063e^-5	0.673	UPSTREAM CG13127 INTERGENIC
X	6361039	X_6361039_SNP [dm3] X_6467006_SNP [dm6]	C	A	9.090e^-5	0.673	UTR_3_PRIME CG42340	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22902338	3R_22902338_SNP [dm3] 3R_27076616_SNP [dm6]	G	A	9.102e^-5	0.673	INTRON CG14257
3R	27008420	3R_27008420_SNP [dm3] 3R_31182698_SNP [dm6]	A	G	9.108e^-5	0.673	SYNONYMOUS_CODING mesh	TF binding site mE1_TFBS_chinmo
3R	14972649	3R_14972649_SNP [dm3] 3R_19146927_SNP [dm6]	C	T	9.126e^-5	0.673	INTRON Ppcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11037879	2L_11037879_SNP [dm3] 2L_11037879_SNP [dm6]	C	G	9.203e^-5	0.673	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10725342	X_10725342_SNP [dm3] X_10831309_SNP [dm6]	C	G	9.281e^-5	0.673	INTERGENIC
3L	11330526	3L_11330526_SNP [dm3] 3L_11337426_SNP [dm6]	A	T	9.312e^-5	0.673	INTERGENIC	TF binding site mE1_TFBS_sens
3L	9241877	3L_9241877_SNP [dm3] 3L_9248777_SNP [dm6]	T	A	9.355e^-5	0.673	INTERGENIC
X	20042548	X_20042548_DEL [dm3] X_20148515_DEL [dm6]	AA	A	9.373e^-5	0.673	INTRON CG9572
2L	6268266	2L_6268266_SNP [dm3] 2L_6268266_SNP [dm6]	C	G	9.385e^-5	0.673	INTRON Ddr
3L	9866334	3L_9866334_SNP [dm3] 3L_9873234_SNP [dm6]	G	A	9.386e^-5	0.673	INTERGENIC
3R	26943060	3R_26943060_INS [dm3] 3R_31117338_INS [dm6]	A	ATAATAGGTAA...	9.417e^-5	0.673	INTERGENIC
3R	14381889	3R_14381889_SNP [dm3] 3R_18556167_SNP [dm6]	C	A	9.499e^-5	0.673	INTERGENIC
2L	11037936	2L_11037936_DEL [dm3] 2L_11037936_DEL [dm6]	GTA	G	9.529e^-5	0.673	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	11037940	2L_11037940_DEL [dm3] 2L_11037940_DEL [dm6]	GTATCTTA	G	9.529e^-5	0.673	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	16161921	X_16161921_SNP [dm3] X_16267888_SNP [dm6]	T	A	9.529e^-5	0.673	INTRON kat80
3L	9896448	3L_9896448_SNP [dm3] 3L_9903348_SNP [dm6]	G	T	9.593e^-5	0.673	DOWNSTREAM nudE INTERGENIC
2R	12819239	2R_12819239_SNP [dm3] 2R_16931734_SNP [dm6]	A	G	9.598e^-5	0.673	INTRON Pkc53E
3R	26943207	3R_26943207_SNP [dm3] 3R_31117485_SNP [dm6]	A	C	9.616e^-5	0.673	INTERGENIC
X	9107712	X_9107712_SNP [dm3] X_9213679_SNP [dm6]	G	A	9.616e^-5	0.673	INTERGENIC
X	2840916	X_2840916_SNP [dm3] X_2946883_SNP [dm6]	C	T	9.644e^-5	0.673	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	9941599	X_9941599_SNP [dm3] X_10047566_SNP [dm6]	C	T	9.714e^-5	0.673	INTRON Cht6 EXON CR45185 & 1 other
2L	12132857	2L_12132857_SNP [dm3] 2L_12132857_SNP [dm6]	C	A	9.802e^-5	0.673	INTRON rho-6
X	14462941	X_14462941_SNP [dm3] X_14568908_SNP [dm6]	G	C	9.819e^-5	0.673	INTERGENIC
X	20042624	X_20042624_SNP [dm3] X_20148591_SNP [dm6]	A	G	9.821e^-5	0.673	INTRON CG9572
3L	14967576	3L_14967576_SNP [dm3] 3L_14974476_SNP [dm6]	C	A	9.855e^-5	0.673	UPSTREAM Ocho INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	4258157	2R_4258157_DEL [dm3] 2R_8370652_DEL [dm6]	AA	A	9.893e^-5	0.673	UPSTREAM CG2127 & 1 other INTRON pdm3	transposable element FlyBase
3L	7148520	3L_7148520_SNP [dm3] 3L_7155420_SNP [dm6]	C	A	1.004e^-4	0.673	INTRON corn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11627119	3L_11627119_SNP [dm3] 3L_11634019_SNP [dm6]	A	T	1.007e^-4	0.673	UPSTREAM CR45158 INTRON CG32091
2L	11037896	2L_11037896_SNP [dm3] 2L_11037896_SNP [dm6]	A	G	1.012e^-4	0.673	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10974221	3L_10974221_SNP [dm3] 3L_10981121_SNP [dm6]	C	T	1.015e^-4	0.673	DOWNSTREAM klu INTERGENIC
2L	9519349	2L_9519349_SNP [dm3] 2L_9519349_SNP [dm6]	A	T	1.017e^-4	0.673	INTRON CG33298
2L	6106968	2L_6106968_SNP [dm3] 2L_6106968_SNP [dm6]	A	G	1.020e^-4	0.673	INTRON stai
2L	11037893	2L_11037893_SNP [dm3] 2L_11037893_SNP [dm6]	G	A	1.021e^-4	0.673	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	19594666	X_19594666_SNP [dm3] X_19700633_SNP [dm6]	C	A	1.023e^-4	0.673	SYNONYMOUS_CODING CG14231 DOWNSTREAM Cdc42	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3702016	3R_3702016_INS [dm3] 3R_7876294_INS [dm6]	A	AAGAGGCAA	1.029e^-4	0.673	INTRON CG17816
2L	4635277	2L_4635277_SNP [dm3] 2L_4635277_SNP [dm6]	A	G	1.033e^-4	0.673	UPSTREAM CR45452 INTERGENIC
2L	12125938	2L_12125938_SNP [dm3] 2L_12125938_SNP [dm6]	A	G	1.035e^-4	0.673	INTRON CG17211
3R	26020833	3R_26020833_SNP [dm3] 3R_30195111_SNP [dm6]	C	T	1.037e^-4	0.673	SYNONYMOUS_CODING CG15531
3R	22978013	3R_22978013_SNP [dm3] 3R_27152291_SNP [dm6]	T	C	1.037e^-4	0.673	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	18164657	2R_18164657_SNP [dm3] 2R_22277152_SNP [dm6]	T	A	1.043e^-4	0.673	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25537776	3R_25537776_SNP [dm3] 3R_29712054_SNP [dm6]	A	C	1.045e^-4	0.673	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9716095	2R_9716095_SNP [dm3] 2R_13828590_SNP [dm6]	T	C	1.051e^-4	0.673	UPSTREAM CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl
3R	16018588	3R_16018588_SNP [dm3] 3R_20192866_SNP [dm6]	T	G	1.055e^-4	0.673	INTERGENIC
3R	27075848	3R_27075848_SNP [dm3] 3R_31250126_SNP [dm6]	G	A	1.058e^-4	0.673	INTRON qless
3R	6537345	3R_6537345_SNP [dm3] 3R_10711623_SNP [dm6]	C	A	1.059e^-4	0.673	UPSTREAM CG14689 INTERGENIC
2L	11576187	2L_11576187_SNP [dm3] 2L_11576187_SNP [dm6]	T	A	1.063e^-4	0.673	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16565839	2L_16565839_INS [dm3] 2L_16565839_INS [dm6]	A	AGA	1.064e^-4	0.673	INTRON CG42389
3L	5681176	3L_5681176_SNP [dm3] 3L_5688076_SNP [dm6]	T	A	1.069e^-4	0.673	INTRON sif
3L	1401021	3L_1401021_SNP [dm3] 3L_1401021_SNP [dm6]	A	G	1.069e^-4	0.673	NON_SYNONYMOUS_CODING CG32320 UPSTREAM tRNA:E4:62Ad & 1 other INTRON Ptp61F	TF binding site BDTNP1_TFBS_hb
3R	27069458	3R_27069458_SNP [dm3] 3R_31243736_SNP [dm6]	T	G	1.070e^-4	0.673	INTRON qless
3R	16320534	3R_16320534_SNP [dm3] 3R_20494812_SNP [dm6]	G	A	1.076e^-4	0.675	INTERGENIC
3R	13316403	3R_13316403_SNP [dm3] 3R_17490681_SNP [dm6]	A	T	1.083e^-4	0.676	INTRON Dscam3
2R	9361765	2R_9361765_SNP [dm3] 2R_13474260_SNP [dm6]	G	A	1.085e^-4	0.676	INTRON arr
2R	8927125	2R_8927125_SNP [dm3] 2R_13039620_SNP [dm6]	C	T	1.089e^-4	0.677	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15257416	2R_15257416_SNP [dm3] 2R_19369911_SNP [dm6]	A	T	1.097e^-4	0.679	INTRON CG9416
X	17627655	X_17627655_DEL [dm3] X_17733622_DEL [dm6]	TT	T	1.110e^-4	0.685	INTRON CG42684	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11778147	X_11778147_SNP [dm3] X_11884114_SNP [dm6]	G	C	1.119e^-4	0.688	INTRON CG10353
3R	18182775	3R_18182775_SNP [dm3] 3R_22357053_SNP [dm6]	C	T	1.124e^-4	0.689	UPSTREAM Sar1 DOWNSTREAM rdhB INTRON Sar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5477429	3L_5477429_SNP [dm3] 3L_5484329_SNP [dm6]	G	A	1.130e^-4	0.691	DOWNSTREAM CG4835 INTERGENIC
3L	5347502	3L_5347502_SNP [dm3] 3L_5354402_SNP [dm6]	A	T	1.134e^-4	0.691	INTRON lama	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16125342	2R_16125342_SNP [dm3] 2R_20237837_SNP [dm6]	G	T	1.139e^-4	0.691	SYNONYMOUS_CODING CG11099 DOWNSTREAM CG13869
2R	16532695	2R_16532695_SNP [dm3] 2R_20645190_SNP [dm6]	G	A	1.155e^-4	0.696	SYNONYMOUS_CODING DMAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21516050	3R_21516050_SNP [dm3] 3R_25690328_SNP [dm6]	G	C	1.161e^-4	0.696	INTERGENIC
3R	25587501	3R_25587501_SNP [dm3] 3R_29761779_SNP [dm6]	C	T	1.162e^-4	0.696	INTERGENIC
3L	11661079	3L_11661079_SNP [dm3] 3L_11667979_SNP [dm6]	G	T	1.163e^-4	0.696	INTRON CG32085
X	10067822	X_10067822_SNP [dm3] X_10173789_SNP [dm6]	G	T	1.165e^-4	0.696	INTRON CG43902 & 1 other
3R	3354205	3R_3354205_SNP [dm3] 3R_7528483_SNP [dm6]	C	A	1.178e^-4	0.699	NON_SYNONYMOUS_CODING alpha-Est6 DOWNSTREAM Rtnl2 & 1 other
2L	11037867	2L_11037867_SNP [dm3] 2L_11037867_SNP [dm6]	G	A	1.179e^-4	0.699	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	3232222	X_3232222_SNP [dm3] X_3338189_SNP [dm6]	A	G	1.182e^-4	0.699	INTRON CR44886 & 1 other
3R	7424531	3R_7424531_SNP [dm3] 3R_11598809_SNP [dm6]	T	C	1.187e^-4	0.699	INTRON Jupiter
3L	5357762	3L_5357762_SNP [dm3] 3L_5364662_SNP [dm6]	C	A	1.200e^-4	0.699	INTRON Uev1A	TF binding site mE1_TFBS_inv
3L	11330514	3L_11330514_SNP [dm3] 3L_11337414_SNP [dm6]	T	C	1.209e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_sens
2L	122642	2L_122642_SNP [dm3] 2L_122642_SNP [dm6]	T	G	1.212e^-4	0.699	UTR_3_PRIME CG3164 UPSTREAM CG4822 & 1 other INTRON CG11455	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12910069	3L_12910069_SNP [dm3] 3L_12916969_SNP [dm6]	A	T	1.217e^-4	0.699	INTERGENIC
2L	9535175	2L_9535175_SNP [dm3] 2L_9535175_SNP [dm6]	C	T	1.220e^-4	0.699	SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_cad
X	3530291	X_3530291_SNP [dm3] X_3636258_SNP [dm6]	A	G	1.221e^-4	0.699	INTRON AstA-R1
2L	12138679	2L_12138679_SNP [dm3] 2L_12138679_SNP [dm6]	T	G	1.223e^-4	0.699	INTRON Gr33a
3L	20997373	3L_20997373_SNP [dm3] 3L_21004273_SNP [dm6]	G	T	1.228e^-4	0.699	INTRON skd
X	11044472	X_11044472_SNP [dm3] X_11150439_SNP [dm6]	T	C	1.229e^-4	0.699	INTRON Lint-1	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	16635979	2R_16635979_SNP [dm3] 2R_20748474_SNP [dm6]	G	T	1.229e^-4	0.699	SYNONYMOUS_CODING dpr
X	11055719	X_11055719_SNP [dm3] X_11161686_SNP [dm6]	C	T	1.230e^-4	0.699	SYNONYMOUS_CODING Dlic	TF binding site mE1_TFBS_sens
3R	14381751	3R_14381751_SNP [dm3] 3R_18556029_SNP [dm6]	T	A	1.233e^-4	0.699	INTERGENIC
3R	3548707	3R_3548707_SNP [dm3] 3R_7722985_SNP [dm6]	T	C	1.234e^-4	0.699	NON_SYNONYMOUS_CODING CG2616	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	3365854	X_3365854_DEL [dm3] X_3471821_DEL [dm6]	CAAAC	C	1.242e^-4	0.7	INTRON CR44999 & 1 other
X	16165696	X_16165696_SNP [dm3] X_16271663_SNP [dm6]	C	A	1.243e^-4	0.7	NON_SYNONYMOUS_CODING Mfe2 INTRON kat80	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	10003108	2R_10003108_SNP [dm3] 2R_14115603_SNP [dm6]	A	G	1.246e^-4	0.7	INTRON Prosap
3L	4194762	3L_4194762_SNP [dm3] 3L_4194762_SNP [dm6]	G	A	1.255e^-4	0.701	NON_SYNONYMOUS_CODING CG43367 UTR_5_PRIME CG43367 DOWNSTREAM tipE	TF binding site BDTNP1_TFBS_dl
3L	5420358	3L_5420358_SNP [dm3] 3L_5427258_SNP [dm6]	G	A	1.255e^-4	0.701	INTRON CG34391
2L	3835229	2L_3835229_SNP [dm3] 2L_3835229_SNP [dm6]	C	A	1.270e^-4	0.707	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26942376	3R_26942376_SNP [dm3] 3R_31116654_SNP [dm6]	A	G	1.279e^-4	0.707	INTERGENIC
2R	14116338	2R_14116338_SNP [dm3] 2R_18228833_SNP [dm6]	C	T	1.284e^-4	0.707	DOWNSTREAM CR45310 EXON CR45311
X	3530304	X_3530304_SNP [dm3] X_3636271_SNP [dm6]	C	A	1.285e^-4	0.707	INTRON AstA-R1
3L	10093237	3L_10093237_SNP [dm3] 3L_10100137_SNP [dm6]	A	G	1.288e^-4	0.707	SYNONYMOUS_CODING CG42826 INTRON dpr6
2L	12123397	2L_12123397_SNP [dm3] 2L_12123397_SNP [dm6]	C	A	1.289e^-4	0.707	INTRON CG17211
3L	13822359	3L_13822359_SNP [dm3] 3L_13829259_SNP [dm6]	T	C	1.297e^-4	0.708	INTERGENIC
3R	26928847	3R_26928847_SNP [dm3] 3R_31103125_SNP [dm6]	G	A	1.303e^-4	0.708	INTERGENIC
3R	25318348	3R_25318348_SNP [dm3] 3R_29492626_SNP [dm6]	T	C	1.304e^-4	0.708	SYNONYMOUS_CODING CG2310	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9662285	2R_9662285_SNP [dm3] 2R_13774780_SNP [dm6]	C	T	1.317e^-4	0.708	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9519347	2L_9519347_SNP [dm3] 2L_9519347_SNP [dm6]	A	T	1.317e^-4	0.708	INTRON CG33298
2L	4591242	2L_4591242_SNP [dm3] 2L_4591242_SNP [dm6]	G	A	1.321e^-4	0.708	INTRON dp
X	19659531	X_19659531_DEL [dm3] X_19765498_DEL [dm6]	ATAACAAGTTTT...	A	1.322e^-4	0.708	UPSTREAM CG12702 DOWNSTREAM vfl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16622985	3L_16622985_DEL [dm3] 3L_16629885_DEL [dm6]	TCT	T	1.322e^-4	0.708	INTRON Abl
3L	2504731	3L_2504731_SNP [dm3] 3L_2504731_SNP [dm6]	T	A	1.327e^-4	0.709	DOWNSTREAM Spn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16544202	3R_16544202_INS [dm3] 3R_20718480_INS [dm6]	G	GTGG	1.343e^-4	0.716	INTERGENIC
3R	14381977	3R_14381977_SNP [dm3] 3R_18556255_SNP [dm6]	T	G	1.353e^-4	0.719	INTERGENIC
3R	26928757	3R_26928757_SNP [dm3] 3R_31103035_SNP [dm6]	T	C	1.360e^-4	0.72	INTERGENIC
2R	16072416	2R_16072416_DEL [dm3] 2R_20184911_DEL [dm6]	ATA	A	1.367e^-4	0.72	INTERGENIC
3R	14381806	3R_14381806_SNP [dm3] 3R_18556084_SNP [dm6]	G	A	1.372e^-4	0.72	INTERGENIC
3R	21956164	3R_21956164_SNP [dm3] 3R_26130442_SNP [dm6]	T	G	1.375e^-4	0.72	UTR_3_PRIME CG31324 DOWNSTREAM CG31324
3R	14620235	3R_14620235_SNP [dm3] 3R_18794513_SNP [dm6]	C	A	1.375e^-4	0.72	UPSTREAM CG7720 INTRON CG7720
2L	12227586	2L_12227586_SNP [dm3] 2L_12227586_SNP [dm6]	C	A	1.386e^-4	0.724	INTRON aret
3L	4167059	3L_4167059_SNP [dm3] 3L_4167059_SNP [dm6]	A	G	1.397e^-4	0.728	INTRON mas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	1505195	2L_1505195_SNP [dm3] 2L_1505195_SNP [dm6]	A	T	1.406e^-4	0.73	DOWNSTREAM CR44064 INTERGENIC
3L	23215546	3L_23215546_SNP [dm3] 3L_23222446_SNP [dm6]	C	T	1.410e^-4	0.73	INTRON nAChRalpha4	transposable element FlyBase
3R	25669794	3R_25669794_SNP [dm3] 3R_29844072_SNP [dm6]	G	A	1.417e^-4	0.732	INTRON Cad99C
3R	5896054	3R_5896054_SNP [dm3] 3R_10070332_SNP [dm6]	C	G	1.420e^-4	0.732	UPSTREAM nerfin-2 INTERGENIC
2L	12131801	2L_12131801_SNP [dm3] 2L_12131801_SNP [dm6]	A	G	1.438e^-4	0.739	INTRON rho-6
3R	14381803	3R_14381803_INS [dm3] 3R_18556081_INS [dm6]	A	ACAATA	1.443e^-4	0.739	INTERGENIC
2R	11530390	2R_11530390_SNP [dm3] 2R_15642885_SNP [dm6]	G	C	1.453e^-4	0.741	INTRON CG42524
2L	13803803	2L_13803803_SNP [dm3] 2L_13803803_SNP [dm6]	G	C	1.457e^-4	0.741	UTR_5_PRIME CAH1
2L	6813706	2L_6813706_SNP [dm3] 2L_6813706_SNP [dm6]	T	C	1.458e^-4	0.741	DOWNSTREAM CR44081 INTERGENIC
2L	6827384	2L_6827384_SNP [dm3] 2L_6827384_SNP [dm6]	G	A	1.472e^-4	0.744	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11981321	3R_11981321_SNP [dm3] 3R_16155599_SNP [dm6]	A	C	1.475e^-4	0.744	NON_SYNONYMOUS_CODING CG6006	TF binding site mE1_TFBS_cad
3R	25484556	3R_25484556_SNP [dm3] 3R_29658834_SNP [dm6]	G	A	1.481e^-4	0.744	INTRON Dop1R2
2L	10029164	2L_10029164_SNP [dm3] 2L_10029164_SNP [dm6]	C	T	1.488e^-4	0.744	UTR_3_PRIME CG13127
3R	14381755	3R_14381755_SNP [dm3] 3R_18556033_SNP [dm6]	A	T	1.488e^-4	0.744	INTERGENIC
3R	27085439	3R_27085439_SNP [dm3] 3R_31259717_SNP [dm6]	G	A	1.505e^-4	0.744	SYNONYMOUS_CODING CG3669 UPSTREAM CG18672
X	19349824	X_19349824_SNP [dm3] X_19455791_SNP [dm6]	G	A	1.508e^-4	0.744	INTRON kek5
X	3530568	X_3530568_SNP [dm3] X_3636535_SNP [dm6]	T	A	1.512e^-4	0.744	INTRON AstA-R1	transposable element FlyBase
3R	18172717	3R_18172717_SNP [dm3] 3R_22346995_SNP [dm6]	A	G	1.512e^-4	0.744	INTERGENIC
3L	10068133	3L_10068133_SNP [dm3] 3L_10075033_SNP [dm6]	C	T	1.515e^-4	0.744	INTRON dpr6
3L	10740548	3L_10740548_SNP [dm3] 3L_10747448_SNP [dm6]	C	T	1.521e^-4	0.744	INTERGENIC
2R	13169731	2R_13169731_SNP [dm3] 2R_17282226_SNP [dm6]	T	A	1.534e^-4	0.744	INTRON mbl
2L	7329797	2L_7329797_SNP [dm3] 2L_7329797_SNP [dm6]	C	A	1.535e^-4	0.744	UPSTREAM CR45304 INTERGENIC
3R	20133576	3R_20133576_SNP [dm3] 3R_24307854_SNP [dm6]	C	T	1.538e^-4	0.744	INTRON crb	TF binding site mE1_TFBS_cad
3L	10853110	3L_10853110_SNP [dm3] 3L_10860010_SNP [dm6]	C	T	1.540e^-4	0.744	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15158666	3R_15158666_DEL [dm3] 3R_19332944_DEL [dm6]	TGGCTAT	T	1.545e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7025430	3L_7025430_SNP [dm3] 3L_7032330_SNP [dm6]	A	G	1.552e^-4	0.744	INTRON Mp
X	2514297	X_2514297_SNP [dm3] X_2620264_SNP [dm6]	C	A	1.556e^-4	0.744	UTR_5_PRIME Seipin UPSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6758289	2L_6758289_SNP [dm3] 2L_6758289_SNP [dm6]	C	A	1.561e^-4	0.744	SYNONYMOUS_CODING CG11322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11777997	X_11777997_SNP [dm3] X_11883964_SNP [dm6]	C	A	1.567e^-4	0.744	INTRON CG10353
2L	11037916	2L_11037916_SNP [dm3] 2L_11037916_SNP [dm6]	C	A	1.567e^-4	0.744	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	17540579	3L_17540579_SNP [dm3] 3L_17547479_SNP [dm6]	G	A	1.595e^-4	0.744	DOWNSTREAM Nedd4 & 1 other INTRON Jon74E	TF binding site mE1_TFBS_cad
2L	20877894	2L_20877894_SNP [dm3] 2L_20877894_SNP [dm6]	C	T	1.600e^-4	0.744	INTRON sky & 1 other	TF binding site mE1_TFBS_cnc
3R	16870198	3R_16870198_SNP [dm3] 3R_21044476_SNP [dm6]	T	C	1.605e^-4	0.744	SYNONYMOUS_CODING CG12278 DOWNSTREAM CG31189
2L	5186063	2L_5186063_SNP [dm3] 2L_5186063_SNP [dm6]	A	T	1.613e^-4	0.744	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13280173	3R_13280173_SNP [dm3] 3R_17454451_SNP [dm6]	A	C	1.622e^-4	0.744	INTERGENIC
X	15563877	X_15563877_SNP [dm3] X_15669844_SNP [dm6]	T	C	1.632e^-4	0.744	UPSTREAM CG15646 INTRON CG15646	TF binding site BDTNP1_TFBS_dl
3L	11024484	3L_11024484_SNP [dm3] 3L_11031384_SNP [dm6]	T	A	1.633e^-4	0.744	INTERGENIC
3R	4971394	3R_4971394_SNP [dm3] 3R_9145672_SNP [dm6]	C	T	1.638e^-4	0.744	INTRON pum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25537896	3R_25537896_SNP [dm3] 3R_29712174_SNP [dm6]	G	A	1.639e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8839593	X_8839593_SNP [dm3] X_8945560_SNP [dm6]	C	T	1.640e^-4	0.744	INTRON rdgA
3R	6007559	3R_6007559_SNP [dm3] 3R_10181837_SNP [dm6]	C	T	1.640e^-4	0.744	INTRON CG12814
2L	12138917	2L_12138917_SNP [dm3] 2L_12138917_SNP [dm6]	A	C	1.645e^-4	0.744	SYNONYMOUS_CODING Gr33a
X	11368804	X_11368804_SNP [dm3] X_11474771_SNP [dm6]	A	G	1.655e^-4	0.744	INTRON CG43155
2L	12157661	2L_12157661_DEL [dm3] 2L_12157661_DEL [dm6]	TCGTCCGACGATGTTGACTC...	T	1.673e^-4	0.744	INTRON CG31760
3R	18922569	3R_18922569_SNP [dm3] 3R_23096847_SNP [dm6]	A	G	1.684e^-4	0.744	SPLICE_SITE_REGION CG17109 SYNONYMOUS_CODING CG17109 UPSTREAM CG6733 INTRON CG13830
3R	14687982	3R_14687982_SNP [dm3] 3R_18862260_SNP [dm6]	T	G	1.689e^-4	0.744	INTERGENIC
2L	11037919	2L_11037919_DEL [dm3] 2L_11037919_DEL [dm6]	AC	A	1.689e^-4	0.744	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	7072794	3R_7072794_SNP [dm3] 3R_11247072_SNP [dm6]	G	A	1.695e^-4	0.744	DOWNSTREAM CR43283 & 1 other INTERGENIC
3L	2017521	3L_2017521_SNP [dm3] 3L_2017521_SNP [dm6]	A	G	1.699e^-4	0.744	INTERGENIC
3R	26943149	3R_26943149_SNP [dm3] 3R_31117427_SNP [dm6]	C	T	1.701e^-4	0.744	INTERGENIC
3R	26943217	3R_26943217_SNP [dm3] 3R_31117495_SNP [dm6]	G	C	1.701e^-4	0.744	INTERGENIC
3L	14371623	3L_14371623_SNP [dm3] 3L_14378523_SNP [dm6]	T	C	1.705e^-4	0.744	INTERGENIC
3R	25886249	3R_25886249_SNP [dm3] 3R_30060527_SNP [dm6]	T	G	1.710e^-4	0.744	INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14381737	3R_14381737_SNP [dm3] 3R_18556015_SNP [dm6]	C	T	1.716e^-4	0.744	INTERGENIC
3L	18987949	3L_18987949_SNP [dm3] 3L_18994849_SNP [dm6]	A	T	1.719e^-4	0.744	UPSTREAM CG18135 INTRON CG18135
2L	430672	2L_430672_SNP [dm3] 2L_430672_SNP [dm6]	A	T	1.724e^-4	0.744	UPSTREAM ex INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	12488897	3R_12488897_SNP [dm3] 3R_16663175_SNP [dm6]	A	C	1.724e^-4	0.744	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1282686	3L_1282686_SNP [dm3] 3L_1282686_SNP [dm6]	C	T	1.746e^-4	0.744	INTRON CG32333
X	11777458	X_11777458_SNP [dm3] X_11883425_SNP [dm6]	A	T	1.750e^-4	0.744	SYNONYMOUS_CODING CG10353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12140704	2L_12140704_SNP [dm3] 2L_12140704_SNP [dm6]	G	A	1.752e^-4	0.744	DOWNSTREAM Gr33a INTERGENIC
2L	12528017	2L_12528017_SNP [dm3] 2L_12528017_SNP [dm6]	C	A	1.753e^-4	0.744	INTRON bun	TF binding site BDTNP1_TFBS_dl
X	16162820	X_16162820_SNP [dm3] X_16268787_SNP [dm6]	C	A	1.758e^-4	0.744	NON_SYNONYMOUS_CODING kat80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13169733	2R_13169733_SNP [dm3] 2R_17282228_SNP [dm6]	G	A	1.765e^-4	0.744	INTRON mbl
2L	12130832	2L_12130832_SNP [dm3] 2L_12130832_SNP [dm6]	A	T	1.772e^-4	0.744	DOWNSTREAM CG17211 INTRON rho-6
2L	11037907	2L_11037907_SNP [dm3] 2L_11037907_SNP [dm6]	A	T	1.774e^-4	0.744	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	14972572	3R_14972572_SNP [dm3] 3R_19146850_SNP [dm6]	G	A	1.778e^-4	0.744	INTRON Ppcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15462537	2R_15462537_SNP [dm3] 2R_19575032_SNP [dm6]	C	A	1.780e^-4	0.744	INTRON sm
3R	22958978	3R_22958978_SNP [dm3] 3R_27133256_SNP [dm6]	G	A	1.783e^-4	0.744	INTRON CG6051
3L	15044046	3L_15044046_SNP [dm3] 3L_15050946_SNP [dm6]	G	T	1.792e^-4	0.744	UTR_3_PRIME CG43679 UPSTREAM CG18581 & 1 other DOWNSTREAM CG13461 INTRON Sytbeta
X	12954228	X_12954228_SNP [dm3] X_13060195_SNP [dm6]	G	A	1.792e^-4	0.744	INTRON rad
3R	27668845	3R_27668845_SNP [dm3] 3R_31843123_SNP [dm6]	C	T	1.804e^-4	0.744	UTR_3_PRIME RhoGAP100F
3L	11035399	3L_11035399_SNP [dm3] 3L_11042299_SNP [dm6]	A	C	1.806e^-4	0.744	INTRON CG43693	TF binding site mE1_TFBS_HSA
3L	18987927	3L_18987927_SNP [dm3] 3L_18994827_SNP [dm6]	G	A	1.813e^-4	0.744	UPSTREAM CG18135 INTRON CG18135
2L	6454867	2L_6454867_SNP [dm3] 2L_6454867_SNP [dm6]	A	T	1.816e^-4	0.744	INTRON retm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	18797447	X_18797447_SNP [dm3] X_18903414_SNP [dm6]	C	T	1.825e^-4	0.744	INTRON CG7378
2L	18746359	2L_18746359_SNP [dm3] 2L_18746359_SNP [dm6]	G	T	1.826e^-4	0.744	INTERGENIC
X	12405099	X_12405099_SNP [dm3] X_12511066_SNP [dm6]	G	A	1.827e^-4	0.744	INTRON CG2556
X	11003985	X_11003985_SNP [dm3] X_11109952_SNP [dm6]	T	G	1.828e^-4	0.744	INTRON Hsp60	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	10093970	2R_10093970_SNP [dm3] 2R_14206465_SNP [dm6]	C	T	1.831e^-4	0.744	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26276494	3R_26276494_SNP [dm3] 3R_30450772_SNP [dm6]	G	T	1.833e^-4	0.744	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	23115799	3L_23115799_SNP [dm3] 3L_23122699_SNP [dm6]	T	A	1.836e^-4	0.744	INTERGENIC
2L	11037880	2L_11037880_SNP [dm3] 2L_11037880_SNP [dm6]	G	C	1.838e^-4	0.744	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11037883	2L_11037883_SNP [dm3] 2L_11037883_SNP [dm6]	A	G	1.838e^-4	0.744	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10905128	3R_10905128_SNP [dm3] 3R_15079406_SNP [dm6]	A	G	1.848e^-4	0.744	UTR_3_PRIME CG6966 UPSTREAM CG6974
X	9941933	X_9941933_INS [dm3] X_10047900_INS [dm6]	A	AA	1.850e^-4	0.744	INTRON Cht6 EXON CR45185 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4194938	3L_4194938_SNP [dm3] 3L_4194938_SNP [dm6]	T	A	1.850e^-4	0.744	INTRON CG43367	TF binding site BDTNP1_TFBS_dl
3R	26129536	3R_26129536_SNP [dm3] 3R_30303814_SNP [dm6]	A	G	1.866e^-4	0.744	INTRON hdc
3R	16447071	3R_16447071_SNP [dm3] 3R_20621349_SNP [dm6]	A	C	1.869e^-4	0.744	UPSTREAM H DOWNSTREAM CG5466 INTERGENIC
3L	12958830	3L_12958830_SNP [dm3] 3L_12965730_SNP [dm6]	C	G	1.874e^-4	0.744	NON_SYNONYMOUS_CODING Or69a INTRON Or69a
X	3531040	X_3531040_SNP [dm3] X_3637007_SNP [dm6]	A	T	1.881e^-4	0.744	INTRON AstA-R1
3R	12358210	3R_12358210_DEL [dm3] 3R_16532488_DEL [dm6]	GATA	G	1.881e^-4	0.744	INTRON CG42342
3L	5672405	3L_5672405_SNP [dm3] 3L_5679305_SNP [dm6]	T	C	1.883e^-4	0.744	INTRON sif
3L	1824810	3L_1824810_SNP [dm3] 3L_1824810_SNP [dm6]	C	T	1.884e^-4	0.744	INTRON Cpr62Ba
2L	1578436	2L_1578436_SNP [dm3] 2L_1578436_SNP [dm6]	T	A	1.885e^-4	0.744	INTRON haf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19078961	3R_19078961_SNP [dm3] 3R_23253239_SNP [dm6]	A	C	1.887e^-4	0.744	SYNONYMOUS_CODING EloA
3R	20396776	3R_20396776_SNP [dm3] 3R_24571054_SNP [dm6]	C	T	1.891e^-4	0.744	INTRON CG13624
2L	13798656	2L_13798656_SNP [dm3] 2L_13798656_SNP [dm6]	C	T	1.894e^-4	0.744	SYNONYMOUS_CODING Sec71	TF binding site mE1_TFBS_cad
X	7086304	X_7086304_DEL [dm3] X_7192271_DEL [dm6]	ACTATCAA	A	1.895e^-4	0.744	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
X	4285620	X_4285620_SNP [dm3] X_4391587_SNP [dm6]	C	T	1.896e^-4	0.744	INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18293755	3L_18293755_SNP [dm3] 3L_18300655_SNP [dm6]	C	T	1.897e^-4	0.744	INTRON CG13700
X	13677099	X_13677099_SNP [dm3] X_13783066_SNP [dm6]	C	T	1.898e^-4	0.744	SYNONYMOUS_CODING CG11103 UPSTREAM CtsB1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17027033	2R_17027033_SNP [dm3] 2R_21139528_SNP [dm6]	A	G	1.898e^-4	0.744	INTRON Magi
2L	9607795	2L_9607795_SNP [dm3] 2L_9607795_SNP [dm6]	A	T	1.908e^-4	0.744	UPSTREAM gcm2 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11330742	3L_11330742_SNP [dm3] 3L_11337642_SNP [dm6]	C	T	1.916e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_sens
3R	8200799	3R_8200799_SNP [dm3] 3R_12375077_SNP [dm6]	C	A	1.928e^-4	0.744	UPSTREAM GstD5 DOWNSTREAM GstD4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16162075	X_16162075_SNP [dm3] X_16268042_SNP [dm6]	T	C	1.931e^-4	0.744	INTRON kat80
X	16161384	X_16161384_SNP [dm3] X_16267351_SNP [dm6]	A	T	1.931e^-4	0.744	UTR_3_PRIME kat80 UPSTREAM CG12507
3R	18182890	3R_18182890_SNP [dm3] 3R_22357168_SNP [dm6]	C	G	1.936e^-4	0.744	UPSTREAM Sar1 DOWNSTREAM rdhB INTRON Sar1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15013369	3R_15013369_SNP [dm3] 3R_19187647_SNP [dm6]	A	T	1.937e^-4	0.744	INTRON CG31475
3R	26926765	3R_26926765_SNP [dm3] 3R_31101043_SNP [dm6]	G	A	1.938e^-4	0.744	NON_SYNONYMOUS_CODING CG15553
2L	8296190	2L_8296190_SNP [dm3] 2L_8296190_SNP [dm6]	C	A	1.940e^-4	0.744	DOWNSTREAM CR43752 INTRON Btk29A	TF binding site BDTNP1_TFBS_dl
3R	25806119	3R_25806119_SNP [dm3] 3R_29980397_SNP [dm6]	C	T	1.940e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18922548	3R_18922548_SNP [dm3] 3R_23096826_SNP [dm6]	T	C	1.943e^-4	0.744	SYNONYMOUS_CODING CG17109 UPSTREAM CG6733 INTRON CG13830
2L	3980041	2L_3980041_SNP [dm3] 2L_3980041_SNP [dm6]	A	G	1.944e^-4	0.744	INTRON fred
2R	3969234	2R_3969234_SNP [dm3] 2R_8081729_SNP [dm6]	T	C	1.945e^-4	0.744	INTRON slv	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4258166	2R_4258166_SNP [dm3] 2R_8370661_SNP [dm6]	A	T	1.955e^-4	0.744	UPSTREAM CG2127 & 1 other INTRON pdm3	transposable element FlyBase
3R	6250403	3R_6250403_DEL [dm3] 3R_10424681_DEL [dm6]	AAA	GG	1.955e^-4	0.744	INTERGENIC
3L	13221134	3L_13221134_SNP [dm3] 3L_13228034_SNP [dm6]	A	G	1.956e^-4	0.744	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	10014800	2R_10014800_SNP [dm3] 2R_14127295_SNP [dm6]	T	A	1.963e^-4	0.744	INTRON Prosap
3R	19389425	3R_19389425_SNP [dm3] 3R_23563703_SNP [dm6]	C	T	1.965e^-4	0.744	INTRON beat-IV
X	19350360	X_19350360_SNP [dm3] X_19456327_SNP [dm6]	G	C	1.967e^-4	0.744	INTRON kek5
2L	9607790	2L_9607790_MNP [dm3] 2L_9607790_MNP [dm6]	ACAA	TTGT	1.969e^-4	0.744	UPSTREAM gcm2 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	3978790	2R_3978790_INS [dm3] 2R_8091285_INS [dm6]	T	TATGT	1.975e^-4	0.744	UTR_3_PRIME sut3 UPSTREAM CG8713
2R	7137066	2R_7137066_SNP [dm3] 2R_11249561_SNP [dm6]	C	A	1.980e^-4	0.744	UPSTREAM CG43112 & 1 other DOWNSTREAM CG34227 INTERGENIC
3L	16862569	3L_16862569_SNP [dm3] 3L_16869469_SNP [dm6]	G	A	1.980e^-4	0.744	INTRON Lmpt
3R	26129375	3R_26129375_SNP [dm3] 3R_30303653_SNP [dm6]	A	T	1.980e^-4	0.744	INTRON hdc
3R	25321372	3R_25321372_SNP [dm3] 3R_29495650_SNP [dm6]	G	A	1.981e^-4	0.744	UTR_5_PRIME CG2010 UPSTREAM CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	12138803	2L_12138803_SNP [dm3] 2L_12138803_SNP [dm6]	C	T	1.984e^-4	0.744	SYNONYMOUS_CODING Gr33a
X	8148658	X_8148658_SNP [dm3] X_8254625_SNP [dm6]	G	A	1.985e^-4	0.744	INTRON CG1632
X	7086324	X_7086324_SNP [dm3] X_7192291_SNP [dm6]	T	A	1.986e^-4	0.744	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
X	14612074	X_14612074_SNP [dm3] X_14718041_SNP [dm6]	T	G	1.993e^-4	0.744	DOWNSTREAM hog INTRON NetB
2R	17027018	2R_17027018_SNP [dm3] 2R_21139513_SNP [dm6]	T	C	1.994e^-4	0.744	INTRON Magi
2L	7597326	2L_7597326_SNP [dm3] 2L_7597326_SNP [dm6]	C	T	1.997e^-4	0.744	INTERGENIC	silencer mE1_HDAC_PRE
2R	12837378	2R_12837378_SNP [dm3] 2R_16949873_SNP [dm6]	G	A	1.999e^-4	0.744	NON_SYNONYMOUS_CODING mute	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15986029	3L_15986029_SNP [dm3] 3L_15992929_SNP [dm6]	A	G	2.002e^-4	0.744	UTR_3_PRIME CG5830 DOWNSTREAM Hip14	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20409038	2R_20409038_SNP [dm3] 2R_24521515_SNP [dm6]	G	T	2.010e^-4	0.744	DOWNSTREAM CG4612 & 1 other EXON Ir60f	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20822064	2L_20822064_SNP [dm3] 2L_20822064_SNP [dm6]	T	C	2.012e^-4	0.744	UPSTREAM CG9331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	27783727	3R_27783727_SNP [dm3] 3R_31958005_SNP [dm6]	C	T	2.013e^-4	0.744	INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13927649	3R_13927649_DEL [dm3] 3R_18101927_DEL [dm6]	CC	C	2.018e^-4	0.744	INTRON sr
2L	12128707	2L_12128707_SNP [dm3] 2L_12128707_SNP [dm6]	G	C	2.023e^-4	0.744	NON_SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1849422	2L_1849422_SNP [dm3] 2L_1849422_SNP [dm6]	T	C	2.031e^-4	0.744	INTRON wry
2L	19246871	2L_19246871_SNP [dm3] 2L_19246871_SNP [dm6]	T	C	2.037e^-4	0.744	INTERGENIC
2L	8430678	2L_8430678_SNP [dm3] 2L_8430678_SNP [dm6]	A	T	2.041e^-4	0.744	UTR_3_PRIME Akap200 DOWNSTREAM grk & 1 other
3L	10815060	3L_10815060_SNP [dm3] 3L_10821960_SNP [dm6]	T	G	2.052e^-4	0.744	INTERGENIC
3L	11032936	3L_11032936_SNP [dm3] 3L_11039836_SNP [dm6]	C	A	2.053e^-4	0.744	UTR_5_PRIME CG43693 INTRON CG43693
X	7086317	X_7086317_SNP [dm3] X_7192284_SNP [dm6]	C	A	2.053e^-4	0.744	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
3L	17540605	3L_17540605_SNP [dm3] 3L_17547505_SNP [dm6]	A	G	2.060e^-4	0.744	DOWNSTREAM Nedd4 & 1 other INTRON Jon74E	TF binding site mE1_TFBS_cad
3L	12923740	3L_12923740_SNP [dm3] 3L_12930640_SNP [dm6]	T	A	2.061e^-4	0.744	INTERGENIC
3R	27005477	3R_27005477_SNP [dm3] 3R_31179755_SNP [dm6]	G	A	2.065e^-4	0.744	UTR_3_PRIME mesh INTRON mesh	TF binding site mE1_TFBS_cad
2L	14500591	2L_14500591_SNP [dm3] 2L_14500591_SNP [dm6]	A	C	2.068e^-4	0.744	INTERGENIC	transposable element FlyBase
X	13066504	X_13066504_SNP [dm3] X_13172471_SNP [dm6]	C	T	2.074e^-4	0.744	INTRON CG34411	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	1454647	3L_1454647_SNP [dm3] 3L_1454647_SNP [dm6]	G	A	2.075e^-4	0.744	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	10067841	X_10067841_SNP [dm3] X_10173808_SNP [dm6]	C	T	2.075e^-4	0.744	INTRON CG43902 & 1 other
2R	20448267	2R_20448267_SNP [dm3] 2R_24560744_SNP [dm6]	A	T	2.076e^-4	0.744	UPSTREAM CG11414 INTRON Nurf-38	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
2L	9817228	2L_9817228_SNP [dm3] 2L_9817228_SNP [dm6]	T	C	2.085e^-4	0.744	INTRON nAChRalpha6
X	16994350	X_16994350_SNP [dm3] X_17100317_SNP [dm6]	T	G	2.085e^-4	0.744	UPSTREAM CG4991 INTRON CG4991
3L	1323552	3L_1323552_SNP [dm3] 3L_1323552_SNP [dm6]	C	T	2.090e^-4	0.744	UPSTREAM CG9184 INTRON Myo61F EXON CR45166	TF binding site mE1_TFBS_HSA
2L	16502842	2L_16502842_SNP [dm3] 2L_16502842_SNP [dm6]	G	A	2.093e^-4	0.744	INTRON Tpr2
2L	12133720	2L_12133720_SNP [dm3] 2L_12133720_SNP [dm6]	G	A	2.095e^-4	0.744	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	18978122	X_18978122_SNP [dm3] X_19084089_SNP [dm6]	G	C	2.098e^-4	0.744	UPSTREAM CG7423 DOWNSTREAM CR45503 INTERGENIC
3L	11661124	3L_11661124_SNP [dm3] 3L_11668024_SNP [dm6]	C	T	2.102e^-4	0.744	INTRON CG32085
2R	3308759	2R_3308759_SNP [dm3] 2R_7421254_SNP [dm6]	G	A	2.110e^-4	0.744	INTRON so	TF binding site mE1_TFBS_chinmo
3L	11453118	3L_11453118_SNP [dm3] 3L_11460018_SNP [dm6]	G	T	2.111e^-4	0.744	DOWNSTREAM CG7551 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	107426	2L_107426_SNP [dm3] 2L_107426_SNP [dm6]	A	G	2.116e^-4	0.744	UPSTREAM Nhe1 & 1 other INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	11158104	2R_11158104_SNP [dm3] 2R_15270599_SNP [dm6]	A	T	2.123e^-4	0.744	INTRON Trpm
2L	10886886	2L_10886886_SNP [dm3] 2L_10886886_SNP [dm6]	C	A	2.124e^-4	0.744	DOWNSTREAM CG14071 INTRON CR44490	TF binding site mE1_TFBS_inv
2R	4411536	2R_4411536_SNP [dm3] 2R_8524031_SNP [dm6]	C	T	2.124e^-4	0.744	INTRON mtt
2L	18925205	2L_18925205_SNP [dm3] 2L_18925205_SNP [dm6]	G	A	2.136e^-4	0.744	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18753261	2R_18753261_SNP [dm3] 2R_22865738_SNP [dm6]	A	T	2.138e^-4	0.744	INTERGENIC
2L	10036879	2L_10036879_SNP [dm3] 2L_10036879_SNP [dm6]	T	C	2.142e^-4	0.744	SYNONYMOUS_CODING obst-B
2L	12136672	2L_12136672_SNP [dm3] 2L_12136672_SNP [dm6]	G	A	2.151e^-4	0.744	INTERGENIC
3R	3359397	3R_3359397_SNP [dm3] 3R_7533675_SNP [dm6]	A	T	2.153e^-4	0.744	UTR_3_PRIME alpha-Est5 DOWNSTREAM alphaTub84D & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26944167	3R_26944167_INS [dm3] 3R_31118445_INS [dm6]	A	AGAAATACCAAAA...	2.155e^-4	0.744	INTERGENIC
3R	22958017	3R_22958017_SNP [dm3] 3R_27132295_SNP [dm6]	T	A	2.158e^-4	0.744	INTRON CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	102961	2L_102961_SNP [dm3] 2L_102961_SNP [dm6]	T	C	2.165e^-4	0.744	DOWNSTREAM Zir INTRON CG11377	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	16442031	2L_16442031_SNP [dm3] 2L_16442031_SNP [dm6]	C	G	2.169e^-4	0.744	INTRON CG5888
3L	23075262	3L_23075262_DEL [dm3] 3L_23082162_DEL [dm6]	AAAATCCA	A	2.170e^-4	0.744	INTERGENIC
2L	6758255	2L_6758255_SNP [dm3] 2L_6758255_SNP [dm6]	A	G	2.171e^-4	0.744	NON_SYNONYMOUS_CODING CG11322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3470272	3L_3470272_SNP [dm3] 3L_3470272_SNP [dm6]	T	G	2.173e^-4	0.744	INTRON CG14971
3R	12358198	3R_12358198_INS [dm3] 3R_16532476_INS [dm6]	T	TT	2.179e^-4	0.744	INTRON CG42342
2L	12136699	2L_12136699_SNP [dm3] 2L_12136699_SNP [dm6]	T	G	2.183e^-4	0.744	INTERGENIC
2L	6753686	2L_6753686_SNP [dm3] 2L_6753686_SNP [dm6]	C	A	2.189e^-4	0.744	INTRON CG11221
2L	12134421	2L_12134421_DEL [dm3] 2L_12134421_DEL [dm6]	TT	T	2.190e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12132397	2L_12132397_SNP [dm3] 2L_12132397_SNP [dm6]	T	G	2.190e^-4	0.744	INTRON rho-6
2L	9927128	2L_9927128_SNP [dm3] 2L_9927128_SNP [dm6]	G	A	2.203e^-4	0.744	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12136662	2L_12136662_SNP [dm3] 2L_12136662_SNP [dm6]	A	T	2.219e^-4	0.744	INTERGENIC
X	11848059	X_11848059_SNP [dm3] X_11954026_SNP [dm6]	A	C	2.223e^-4	0.744	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1853708	3L_1853708_SNP [dm3] 3L_1853708_SNP [dm6]	G	T	2.226e^-4	0.744	INTRON CG13936
3R	20279207	3R_20279207_SNP [dm3] 3R_24453485_SNP [dm6]	C	T	2.229e^-4	0.744	INTRON nAChRalpha1
3R	22772639	3R_22772639_SNP [dm3] 3R_26946917_SNP [dm6]	G	A	2.235e^-4	0.744	SYNONYMOUS_CODING CG14252 UPSTREAM CG18472 DOWNSTREAM tRNA:CR31071 & 1 other	TF binding site mE1_TFBS_sens
3R	26295804	3R_26295804_SNP [dm3] 3R_30470082_SNP [dm6]	G	A	2.241e^-4	0.744	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	9941678	X_9941678_SNP [dm3] X_10047645_SNP [dm6]	G	C	2.243e^-4	0.744	INTRON Cht6 EXON CR45185 & 1 other
3R	14782843	3R_14782843_SNP [dm3] 3R_18957121_SNP [dm6]	G	T	2.243e^-4	0.744	INTRON CG42613 & 1 other
3L	12556489	3L_12556489_SNP [dm3] 3L_12563389_SNP [dm6]	T	C	2.263e^-4	0.744	INTRON sowah
3R	9873515	3R_9873515_SNP [dm3] 3R_14047793_SNP [dm6]	G	C	2.264e^-4	0.744	INTERGENIC
3R	26440434	3R_26440434_SNP [dm3] 3R_30614712_SNP [dm6]	C	T	2.265e^-4	0.744	EXON CR45571
3L	1907848	3L_1907848_SNP [dm3] 3L_1907848_SNP [dm6]	C	G	2.267e^-4	0.744	INTRON CG1887
3L	13215384	3L_13215384_SNP [dm3] 3L_13222284_SNP [dm6]	T	C	2.270e^-4	0.744	INTERGENIC
3R	20396875	3R_20396875_SNP [dm3] 3R_24571153_SNP [dm6]	A	T	2.272e^-4	0.744	INTRON CG13624
2L	9928715	2L_9928715_SNP [dm3] 2L_9928715_SNP [dm6]	G	A	2.276e^-4	0.744	INTRON CG42366	TF binding site BDTNP1_TFBS_dl
2L	6106395	2L_6106395_SNP [dm3] 2L_6106395_SNP [dm6]	T	A	2.279e^-4	0.744	INTRON stai
2R	15828998	2R_15828998_SNP [dm3] 2R_19941493_SNP [dm6]	C	G	2.282e^-4	0.744	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19392421	2R_19392421_SNP [dm3] 2R_23504898_SNP [dm6]	G	C	2.285e^-4	0.744	INTERGENIC
3L	7447070	3L_7447070_SNP [dm3] 3L_7453970_SNP [dm6]	T	C	2.293e^-4	0.744	UTR_3_PRIME CG42458
3R	26944229	3R_26944229_SNP [dm3] 3R_31118507_SNP [dm6]	C	T	2.297e^-4	0.744	INTERGENIC
3R	19390686	3R_19390686_SNP [dm3] 3R_23564964_SNP [dm6]	C	T	2.298e^-4	0.744	INTRON beat-IV
3L	1119734	3L_1119734_SNP [dm3] 3L_1119734_SNP [dm6]	T	A	2.300e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_cad
X	8148766	X_8148766_SNP [dm3] X_8254733_SNP [dm6]	C	T	2.311e^-4	0.744	INTRON CG1632
3R	9641574	3R_9641574_SNP [dm3] 3R_13815852_SNP [dm6]	C	T	2.313e^-4	0.744	UPSTREAM CR43642 DOWNSTREAM CR43641 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7086316	X_7086316_SNP [dm3] X_7192283_SNP [dm6]	G	A	2.313e^-4	0.744	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sbb
3R	26129371	3R_26129371_SNP [dm3] 3R_30303649_SNP [dm6]	G	T	2.314e^-4	0.744	INTRON hdc
3R	22352096	3R_22352096_SNP [dm3] 3R_26526374_SNP [dm6]	G	A	2.316e^-4	0.744	INTRON plum	TF binding site mE1_TFBS_cnc
2L	12135872	2L_12135872_SNP [dm3] 2L_12135872_SNP [dm6]	T	A	2.327e^-4	0.744	INTERGENIC
2R	6653166	2R_6653166_SNP [dm3] 2R_10765661_SNP [dm6]	C	T	2.334e^-4	0.744	INTRON CG33144
3R	22979395	3R_22979395_SNP [dm3] 3R_27153673_SNP [dm6]	C	G	2.339e^-4	0.744	INTRON Men-b	TF binding site BDTNP1_TFBS_prd
3L	1281378	3L_1281378_SNP [dm3] 3L_1281378_SNP [dm6]	C	A	2.340e^-4	0.744	INTRON CG32333
2L	8689082	2L_8689082_SNP [dm3] 2L_8689082_SNP [dm6]	G	T	2.345e^-4	0.744	INTRON Hnf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11037803	2L_11037803_SNP [dm3] 2L_11037803_SNP [dm6]	A	G	2.347e^-4	0.744	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16163429	X_16163429_SNP [dm3] X_16269396_SNP [dm6]	C	G	2.348e^-4	0.744	INTRON kat80
3R	27845518	3R_27845518_SNP [dm3] 3R_32019796_SNP [dm6]	G	A	2.355e^-4	0.744	EXON CR45557
3R	23561693	3R_23561693_SNP [dm3] 3R_27735971_SNP [dm6]	T	A	2.358e^-4	0.744	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8687849	2L_8687849_SNP [dm3] 2L_8687849_SNP [dm6]	A	G	2.367e^-4	0.744	DOWNSTREAM Trs23 INTRON Hnf4	TF binding site mE1_TFBS_chinmo
3L	17540608	3L_17540608_SNP [dm3] 3L_17547508_SNP [dm6]	C	G	2.369e^-4	0.744	DOWNSTREAM Nedd4 & 1 other INTRON Jon74E	TF binding site mE1_TFBS_cad
3R	26944100	3R_26944100_SNP [dm3] 3R_31118378_SNP [dm6]	C	T	2.371e^-4	0.744	INTERGENIC
2L	12133872	2L_12133872_DEL [dm3] 2L_12133872_DEL [dm6]	GTTACATTTAG...	G	2.371e^-4	0.744	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25518887	3R_25518887_SNP [dm3] 3R_29693165_SNP [dm6]	G	A	2.378e^-4	0.744	INTRON dmrt99B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5983626	3R_5983626_SNP [dm3] 3R_10157904_SNP [dm6]	T	C	2.381e^-4	0.744	SYNONYMOUS_CODING Invadolysin	TF binding site mE1_TFBS_chinmo
2L	1491075	2L_1491075_SNP [dm3] 2L_1491075_SNP [dm6]	A	G	2.382e^-4	0.744	INTERGENIC
3R	14381904	3R_14381904_INS [dm3] 3R_18556182_INS [dm6]	C	CTGTTGCAAATCATATATTT...	2.386e^-4	0.744	INTERGENIC
3R	22772396	3R_22772396_SNP [dm3] 3R_26946674_SNP [dm6]	G	T	2.394e^-4	0.744	DOWNSTREAM tRNA:CR31071 & 1 other INTRON CG14252	TF binding site mE1_TFBS_sens
X	7087041	X_7087041_INS [dm3] X_7193008_INS [dm6]	T	TT	2.400e^-4	0.744	UTR_5_PRIME CG9650 INTRON CR44357	TF binding site mE1_TFBS_sbb
3R	20396838	3R_20396838_SNP [dm3] 3R_24571116_SNP [dm6]	T	A	2.408e^-4	0.744	INTRON CG13624
2R	12381260	2R_12381260_SNP [dm3] 2R_16493755_SNP [dm6]	C	A	2.412e^-4	0.744	DOWNSTREAM S-Lap8 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8689111	2L_8689111_SNP [dm3] 2L_8689111_SNP [dm6]	T	A	2.421e^-4	0.744	INTRON Hnf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17618060	X_17618060_SNP [dm3] X_17724027_SNP [dm6]	C	T	2.422e^-4	0.744	INTRON CG42684
3L	17540567	3L_17540567_SNP [dm3] 3L_17547467_SNP [dm6]	G	A	2.430e^-4	0.744	DOWNSTREAM Nedd4 & 1 other INTRON Jon74E	TF binding site mE1_TFBS_cad
3R	9873513	3R_9873513_SNP [dm3] 3R_14047791_SNP [dm6]	T	A	2.433e^-4	0.744	INTERGENIC
2L	20876392	2L_20876392_SNP [dm3] 2L_20876392_SNP [dm6]	C	A	2.438e^-4	0.744	DOWNSTREAM CR44981 INTRON sky & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20865822	X_20865822_SNP [dm3] X_20994795_SNP [dm6]	C	T	2.442e^-4	0.744	INTERGENIC
3L	16606541	3L_16606541_SNP [dm3] 3L_16613441_SNP [dm6]	G	C	2.442e^-4	0.744	UTR_3_PRIME Mo25 DOWNSTREAM Mo25 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11660761	3L_11660761_SNP [dm3] 3L_11667661_SNP [dm6]	T	A	2.445e^-4	0.744	INTRON CG32085
3R	27838468	3R_27838468_SNP [dm3] 3R_32012746_SNP [dm6]	G	A	2.447e^-4	0.744	INTRON heph EXON CR45556	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5357783	3L_5357783_SNP [dm3] 3L_5364683_SNP [dm6]	A	T	2.451e^-4	0.744	INTRON Uev1A	TF binding site mE1_TFBS_inv
2R	4491725	2R_4491725_SNP [dm3] 2R_8604220_SNP [dm6]	C	T	2.453e^-4	0.744	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	24029527	3L_24029527_SNP [dm3] 3L_24036427_SNP [dm6]	T	A	2.463e^-4	0.744	DOWNSTREAM CG40045 INTERGENIC
3R	23378842	3R_23378842_SNP [dm3] 3R_27553120_SNP [dm6]	G	A	2.466e^-4	0.744	INTRON Klp98A	TF binding site mE1_TFBS_cad
3R	16069665	3R_16069665_SNP [dm3] 3R_20243943_SNP [dm6]	A	T	2.468e^-4	0.744	INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
3L	11625248	3L_11625248_SNP [dm3] 3L_11632148_SNP [dm6]	A	C	2.474e^-4	0.744	DOWNSTREAM CR45158 INTRON CG32091
2R	19200956	2R_19200956_SNP [dm3] 2R_23313433_SNP [dm6]	G	C	2.474e^-4	0.744	INTRON HP1Lcsd	TF binding site mE1_TFBS_cad
3R	14381754	3R_14381754_SNP [dm3] 3R_18556032_SNP [dm6]	T	C	2.477e^-4	0.744	INTERGENIC
3R	23378172	3R_23378172_SNP [dm3] 3R_27552450_SNP [dm6]	C	T	2.478e^-4	0.744	INTRON Klp98A	TF binding site mE1_TFBS_cad
3R	22772780	3R_22772780_SNP [dm3] 3R_26947058_SNP [dm6]	T	C	2.485e^-4	0.744	SYNONYMOUS_CODING CG14252 UPSTREAM CG18472 DOWNSTREAM tRNA:CR31071 & 1 other
3L	3673830	3L_3673830_SNP [dm3] 3L_3673830_SNP [dm6]	G	A	2.485e^-4	0.744	INTERGENIC
3R	6452122	3R_6452122_SNP [dm3] 3R_10626400_SNP [dm6]	A	G	2.487e^-4	0.744	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9873491	3R_9873491_SNP [dm3] 3R_14047769_SNP [dm6]	G	A	2.504e^-4	0.744	INTERGENIC
3R	25738266	3R_25738266_SNP [dm3] 3R_29912544_SNP [dm6]	G	C	2.509e^-4	0.744	NON_SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
X	20042499	X_20042499_SNP [dm3] X_20148466_SNP [dm6]	C	T	2.509e^-4	0.744	INTRON CG9572
X	16164601	X_16164601_SNP [dm3] X_16270568_SNP [dm6]	C	T	2.511e^-4	0.744	SYNONYMOUS_CODING kat80 UPSTREAM Mfe2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	11671127	3L_11671127_SNP [dm3] 3L_11678027_SNP [dm6]	G	A	2.514e^-4	0.744	INTRON CG32085
X	12638749	X_12638749_SNP [dm3] X_12744716_SNP [dm6]	C	T	2.516e^-4	0.744	SYNONYMOUS_CODING CG4004 UPSTREAM CG4004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15507098	2L_15507098_SNP [dm3] 2L_15507098_SNP [dm6]	G	A	2.542e^-4	0.744	INTERGENIC
X	5034205	X_5034205_SNP [dm3] X_5140172_SNP [dm6]	A	C	2.544e^-4	0.744	INTRON rg & 1 other	TF binding site mE1_TFBS_inv
2R	15828661	2R_15828661_SNP [dm3] 2R_19941156_SNP [dm6]	T	A	2.555e^-4	0.744	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11331870	3L_11331870_SNP [dm3] 3L_11338770_SNP [dm6]	T	G	2.555e^-4	0.744	INTERGENIC
X	12404884	X_12404884_SNP [dm3] X_12510851_SNP [dm6]	A	C	2.560e^-4	0.744	INTRON CG2556
2L	102328	2L_102328_SNP [dm3] 2L_102328_SNP [dm6]	C	T	2.560e^-4	0.744	UPSTREAM CG11377 DOWNSTREAM Zir INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	21112135	3L_21112135_SNP [dm3] 3L_21119035_SNP [dm6]	G	A	2.563e^-4	0.744	INTRON ko	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15169386	X_15169386_SNP [dm3] X_15275353_SNP [dm6]	G	A	2.564e^-4	0.744	INTERGENIC
2L	10604092	2L_10604092_SNP [dm3] 2L_10604092_SNP [dm6]	G	A	2.565e^-4	0.744	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
3L	11661084	3L_11661084_SNP [dm3] 3L_11667984_SNP [dm6]	C	T	2.581e^-4	0.744	INTRON CG32085
X	19879824	X_19879824_INS [dm3] X_19985791_INS [dm6]	G	GATGTTGG	2.584e^-4	0.744	INTERGENIC
2L	13814696	2L_13814696_SNP [dm3] 2L_13814696_SNP [dm6]	G	T	2.584e^-4	0.744	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15829039	2R_15829039_SNP [dm3] 2R_19941534_SNP [dm6]	G	T	2.587e^-4	0.744	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9719614	3L_9719614_SNP [dm3] 3L_9726514_SNP [dm6]	G	C	2.589e^-4	0.744	SYNONYMOUS_CODING defl UPSTREAM Naa60	TF binding site mE1_TFBS_chinmo
2L	12547595	2L_12547595_SNP [dm3] 2L_12547595_SNP [dm6]	A	T	2.590e^-4	0.744	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10828616	2R_10828616_SNP [dm3] 2R_14941111_SNP [dm6]	G	A	2.592e^-4	0.744	DOWNSTREAM Lap1 INTERGENIC
2L	12570438	2L_12570438_SNP [dm3] 2L_12570438_SNP [dm6]	T	G	2.592e^-4	0.744	DOWNSTREAM CR44598 & 1 other INTERGENIC
3R	22944250	3R_22944250_SNP [dm3] 3R_27118528_SNP [dm6]	C	T	2.596e^-4	0.744	UTR_3_PRIME CG5880 UPSTREAM CG5882
2R	7129035	2R_7129035_SNP [dm3] 2R_11241530_SNP [dm6]	C	T	2.599e^-4	0.744	DOWNSTREAM Listericin INTERGENIC
3L	12483270	3L_12483270_SNP [dm3] 3L_12490170_SNP [dm6]	G	A	2.601e^-4	0.744	UTR_5_PRIME CG10660 UPSTREAM CR45681 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12138728	2L_12138728_SNP [dm3] 2L_12138728_SNP [dm6]	C	A	2.606e^-4	0.744	INTRON Gr33a
3R	12358215	3R_12358215_SNP [dm3] 3R_16532493_SNP [dm6]	G	A	2.609e^-4	0.744	INTRON CG42342
2L	2876774	2L_2876774_SNP [dm3] 2L_2876774_SNP [dm6]	T	C	2.610e^-4	0.744	DOWNSTREAM Prx6005 INTRON CG8814
3R	26276491	3R_26276491_SNP [dm3] 3R_30450769_SNP [dm6]	T	A	2.612e^-4	0.744	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15047681	X_15047681_SNP [dm3] X_15153648_SNP [dm6]	T	C	2.619e^-4	0.744	INTRON CG9095
2L	6827715	2L_6827715_SNP [dm3] 2L_6827715_SNP [dm6]	A	C	2.621e^-4	0.744	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19541611	3R_19541611_SNP [dm3] 3R_23715889_SNP [dm6]	C	T	2.628e^-4	0.744	INTRON nau	regulatory region REDfly_CRMs
3R	22933426	3R_22933426_SNP [dm3] 3R_27107704_SNP [dm6]	G	A	2.637e^-4	0.744	DOWNSTREAM gb INTERGENIC
3R	15079793	3R_15079793_SNP [dm3] 3R_19254071_SNP [dm6]	G	A	2.637e^-4	0.744	INTERGENIC
X	17618061	X_17618061_SNP [dm3] X_17724028_SNP [dm6]	T	C	2.645e^-4	0.744	INTRON CG42684
3L	13219064	3L_13219064_SNP [dm3] 3L_13225964_SNP [dm6]	G	A	2.646e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
3L	10069648	3L_10069648_SNP [dm3] 3L_10076548_SNP [dm6]	G	C	2.648e^-4	0.744	INTRON dpr6
2L	2538159	2L_2538159_SNP [dm3] 2L_2538159_SNP [dm6]	G	A	2.650e^-4	0.744	INTERGENIC
2L	16603003	2L_16603003_SNP [dm3] 2L_16603003_SNP [dm6]	T	C	2.654e^-4	0.744	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_zfh1
3L	12157252	3L_12157252_SNP [dm3] 3L_12164152_SNP [dm6]	C	T	2.666e^-4	0.744	UPSTREAM CG9760 DOWNSTREAM Rh7 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11783966	2L_11783966_SNP [dm3] 2L_11783966_SNP [dm6]	G	A	2.671e^-4	0.744	INTERGENIC
2L	1510568	2L_1510568_SNP [dm3] 2L_1510568_SNP [dm6]	G	C	2.677e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6973507	2L_6973507_SNP [dm3] 2L_6973507_SNP [dm6]	C	T	2.677e^-4	0.744	SPLICE_SITE_REGION uif SYNONYMOUS_CODING uif DOWNSTREAM CR43142
X	2841736	X_2841736_SNP [dm3] X_2947703_SNP [dm6]	A	G	2.679e^-4	0.744	UPSTREAM CG3603 DOWNSTREAM CG17959 INTRON kirre
3R	23399671	3R_23399671_INS [dm3] 3R_27573949_INS [dm6]	G	GGTTTTTTCCCGG...	2.681e^-4	0.744	INTRON wdb
3R	21831627	3R_21831627_SNP [dm3] 3R_26005905_SNP [dm6]	T	C	2.682e^-4	0.744	UTR_5_PRIME E_spl_mbeta-HLH DOWNSTREAM CR45039	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11878547	3L_11878547_SNP [dm3] 3L_11885447_SNP [dm6]	A	G	2.690e^-4	0.744	INTRON CG44837
2L	12140796	2L_12140796_SNP [dm3] 2L_12140796_SNP [dm6]	C	G	2.696e^-4	0.744	DOWNSTREAM Gr33a INTERGENIC
3R	25267365	3R_25267365_SNP [dm3] 3R_29441643_SNP [dm6]	A	T	2.702e^-4	0.744	INTRON Ptp99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25484938	3R_25484938_SNP [dm3] 3R_29659216_SNP [dm6]	A	G	2.702e^-4	0.744	UTR_5_PRIME Dop1R2
2R	7466031	2R_7466031_INS [dm3] 2R_11578526_INS [dm6]	C	CC	2.702e^-4	0.744	UTR_3_PRIME tou DOWNSTREAM tou	TF binding site mE1_TFBS_HSA
3R	22398719	3R_22398719_DEL [dm3] 3R_26572997_DEL [dm6]	ACTT	A	2.703e^-4	0.744	INTRON scrib
2L	6814114	2L_6814114_SNP [dm3] 2L_6814114_SNP [dm6]	T	C	2.704e^-4	0.744	INTERGENIC
2L	11579835	2L_11579835_SNP [dm3] 2L_11579835_SNP [dm6]	C	T	2.706e^-4	0.744	INTERGENIC
3L	9719626	3L_9719626_SNP [dm3] 3L_9726526_SNP [dm6]	G	T	2.707e^-4	0.744	SYNONYMOUS_CODING defl UPSTREAM Naa60	TF binding site mE1_TFBS_chinmo
3L	1281434	3L_1281434_SNP [dm3] 3L_1281434_SNP [dm6]	G	T	2.712e^-4	0.744	INTRON CG32333
3L	13221139	3L_13221139_SNP [dm3] 3L_13228039_SNP [dm6]	C	T	2.714e^-4	0.744	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	20396840	3R_20396840_SNP [dm3] 3R_24571118_SNP [dm6]	G	A	2.726e^-4	0.744	INTRON CG13624
2R	13638127	2R_13638127_SNP [dm3] 2R_17750622_SNP [dm6]	G	A	2.729e^-4	0.744	DOWNSTREAM CG10931 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27783630	3R_27783630_INS [dm3] 3R_31957908_INS [dm6]	A	GCAGATGCAC	2.733e^-4	0.744	INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11352789	3L_11352789_SNP [dm3] 3L_11359689_SNP [dm6]	A	T	2.737e^-4	0.744	INTERGENIC
2L	6325082	2L_6325082_SNP [dm3] 2L_6325082_SNP [dm6]	A	T	2.738e^-4	0.744	INTRON PDZ-GEF	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	14259743	3R_14259743_SNP [dm3] 3R_18434021_SNP [dm6]	T	A	2.739e^-4	0.744	INTRON fru
3L	6483607	3L_6483607_SNP [dm3] 3L_6490507_SNP [dm6]	C	A	2.746e^-4	0.744	SYNONYMOUS_CODING CG8270 DOWNSTREAM CG10144
3R	14381722	3R_14381722_SNP [dm3] 3R_18556000_SNP [dm6]	A	G	2.747e^-4	0.744	INTERGENIC
2L	2538140	2L_2538140_SNP [dm3] 2L_2538140_SNP [dm6]	T	A	2.753e^-4	0.744	INTERGENIC
3R	7423703	3R_7423703_SNP [dm3] 3R_11597981_SNP [dm6]	A	T	2.761e^-4	0.744	INTRON Jupiter
3R	14381916	3R_14381916_SNP [dm3] 3R_18556194_SNP [dm6]	G	C	2.765e^-4	0.744	INTERGENIC
3L	13221306	3L_13221306_SNP [dm3] 3L_13228206_SNP [dm6]	G	A	2.766e^-4	0.744	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	2840797	X_2840797_SNP [dm3] X_2946764_SNP [dm6]	C	A	2.767e^-4	0.744	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
2L	12289533	2L_12289533_SNP [dm3] 2L_12289533_SNP [dm6]	A	T	2.768e^-4	0.744	INTRON aret
3R	26007003	3R_26007003_SNP [dm3] 3R_30181281_SNP [dm6]	C	T	2.772e^-4	0.744	UTR_3_PRIME Bet5
2L	3979887	2L_3979887_SNP [dm3] 2L_3979887_SNP [dm6]	C	G	2.783e^-4	0.744	INTRON fred
2L	21964213	2L_21964213_SNP [dm3] 2L_21964213_SNP [dm6]	C	T	2.783e^-4	0.744	INTERGENIC
3R	27008506	3R_27008506_SNP [dm3] 3R_31182784_SNP [dm6]	A	T	2.786e^-4	0.744	INTRON mesh	TF binding site mE1_TFBS_chinmo
2L	10727595	2L_10727595_SNP [dm3] 2L_10727595_SNP [dm6]	A	T	2.787e^-4	0.744	INTRON CG6431
2R	3972263	2R_3972263_SNP [dm3] 2R_8084758_SNP [dm6]	C	A	2.790e^-4	0.744	NON_SYNONYMOUS_CODING sut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14764598	2L_14764598_SNP [dm3] 2L_14764598_SNP [dm6]	G	A	2.797e^-4	0.744	DOWNSTREAM CSN1a INTERGENIC
3L	1758301	3L_1758301_SNP [dm3] 3L_1758301_SNP [dm6]	G	C	2.808e^-4	0.744	NON_SYNONYMOUS_CODING CG8001 DOWNSTREAM Dhc62B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	431370	2L_431370_SNP [dm3] 2L_431370_SNP [dm6]	A	G	2.808e^-4	0.744	UTR_5_PRIME ex	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10712520	3L_10712520_SNP [dm3] 3L_10719420_SNP [dm6]	G	A	2.811e^-4	0.744	INTERGENIC
3R	9884245	3R_9884245_SNP [dm3] 3R_14058523_SNP [dm6]	G	A	2.823e^-4	0.744	INTRON foxo
3R	25164986	3R_25164986_SNP [dm3] 3R_29339264_SNP [dm6]	T	A	2.823e^-4	0.744	INTERGENIC
3L	1075805	3L_1075805_SNP [dm3] 3L_1075805_SNP [dm6]	A	C	2.826e^-4	0.744	INTRON bab1
3R	11575687	3R_11575687_SNP [dm3] 3R_15749965_SNP [dm6]	C	T	2.831e^-4	0.744	INTERGENIC
3R	26714588	3R_26714588_SNP [dm3] 3R_30888866_SNP [dm6]	C	T	2.835e^-4	0.744	UPSTREAM Sap-r INTRON Sap-r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12138638	2L_12138638_SNP [dm3] 2L_12138638_SNP [dm6]	G	A	2.846e^-4	0.744	INTRON Gr33a
2L	15507153	2L_15507153_SNP [dm3] 2L_15507153_SNP [dm6]	T	A	2.847e^-4	0.744	INTERGENIC
X	10435289	X_10435289_DEL [dm3] X_10541256_DEL [dm6]	CAAC	C	2.848e^-4	0.744	INTRON spri	TF binding site BDTNP1_TFBS_twi
3R	1946747	3R_1946747_SNP [dm3] 3R_6121025_SNP [dm6]	T	C	2.849e^-4	0.744	INTERGENIC
3R	8140733	3R_8140733_SNP [dm3] 3R_12315011_SNP [dm6]	T	A	2.853e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sbb
3L	10654686	3L_10654686_SNP [dm3] 3L_10661586_SNP [dm6]	A	G	2.882e^-4	0.744	SYNONYMOUS_CODING CG8003 UPSTREAM CG32066	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	13265189	X_13265189_SNP [dm3] X_13371156_SNP [dm6]	T	A	2.882e^-4	0.744	UTR_5_PRIME CG1640 DOWNSTREAM dmrt11E INTRON CG1640	TF binding site BDTNP1_TFBS_dl
X	4047740	X_4047740_SNP [dm3] X_4153707_SNP [dm6]	T	A	2.886e^-4	0.744	INTRON Fas2	TF binding site mE1_TFBS_HSA
2L	8687858	2L_8687858_SNP [dm3] 2L_8687858_SNP [dm6]	T	A	2.892e^-4	0.744	DOWNSTREAM Trs23 INTRON Hnf4	TF binding site mE1_TFBS_chinmo
3L	8361913	3L_8361913_SNP [dm3] 3L_8368813_SNP [dm6]	C	A	2.895e^-4	0.744	INTERGENIC
3L	3989740	3L_3989740_SNP [dm3] 3L_3989740_SNP [dm6]	C	T	2.901e^-4	0.744	UTR_3_PRIME scrt	TF binding site mE1_TFBS_HSA
2L	4217319	2L_4217319_SNP [dm3] 2L_4217319_SNP [dm6]	T	C	2.901e^-4	0.744	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23378260	3R_23378260_SNP [dm3] 3R_27552538_SNP [dm6]	C	T	2.902e^-4	0.744	INTRON Klp98A	TF binding site mE1_TFBS_cad
2L	12129823	2L_12129823_INS [dm3] 2L_12129823_INS [dm6]	T	TTAATTAAGCC...	2.905e^-4	0.744	UTR_3_PRIME CG17211 DOWNSTREAM rho-6
3L	17564429	3L_17564429_SNP [dm3] 3L_17571329_SNP [dm6]	T	A	2.908e^-4	0.744	INTRON Eip74EF
3L	13221136	3L_13221136_SNP [dm3] 3L_13228036_SNP [dm6]	G	A	2.910e^-4	0.744	UPSTREAM caps INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3R	16572626	3R_16572626_SNP [dm3] 3R_20746904_SNP [dm6]	G	A	2.912e^-4	0.744	SYNONYMOUS_CODING CG42322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22783465	3R_22783465_SNP [dm3] 3R_26957743_SNP [dm6]	T	C	2.912e^-4	0.744	INTRON CG6330
3L	10815184	3L_10815184_SNP [dm3] 3L_10822084_SNP [dm6]	A	T	2.913e^-4	0.744	INTERGENIC
3R	18172945	3R_18172945_SNP [dm3] 3R_22347223_SNP [dm6]	G	T	2.917e^-4	0.744	INTERGENIC
3R	22965005	3R_22965005_SNP [dm3] 3R_27139283_SNP [dm6]	G	A	2.921e^-4	0.744	INTRON CG6051
X	19180201	X_19180201_SNP [dm3] X_19286168_SNP [dm6]	A	T	2.921e^-4	0.744	INTRON CG8034	TF binding site mE1_TFBS_inv
2R	16532686	2R_16532686_SNP [dm3] 2R_20645181_SNP [dm6]	T	C	2.929e^-4	0.744	SYNONYMOUS_CODING DMAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7084314	3L_7084314_SNP [dm3] 3L_7091214_SNP [dm6]	A	G	2.929e^-4	0.744	INTERGENIC
3L	2205214	3L_2205214_SNP [dm3] 3L_2205214_SNP [dm6]	T	C	2.932e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	11158116	2R_11158116_SNP [dm3] 2R_15270611_SNP [dm6]	T	C	2.938e^-4	0.744	INTRON Trpm
2L	14229214	2L_14229214_SNP [dm3] 2L_14229214_SNP [dm6]	G	A	2.939e^-4	0.744	INTRON Dyrk2	TF binding site BDTNP1_TFBS_twi
X	8332741	X_8332741_SNP [dm3] X_8438708_SNP [dm6]	G	T	2.943e^-4	0.744	UTR_5_PRIME CG1440 UPSTREAM CG12125 INTRON CG1440	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20119116	3R_20119116_SNP [dm3] 3R_24293394_SNP [dm6]	A	G	2.945e^-4	0.744	UTR_3_PRIME CG5715 DOWNSTREAM CG6364	TF binding site mE1_TFBS_sens
2R	9143346	2R_9143346_SNP [dm3] 2R_13255841_SNP [dm6]	A	C	2.947e^-4	0.744	UPSTREAM CR44343 & 1 other INTERGENIC
3L	8399393	3L_8399393_SNP [dm3] 3L_8406293_SNP [dm6]	G	A	2.955e^-4	0.744	NON_SYNONYMOUS_CODING CG13667 DOWNSTREAM Oseg1	TF binding site mE1_TFBS_sens
3R	21409469	3R_21409469_SNP [dm3] 3R_25583747_SNP [dm6]	C	G	2.957e^-4	0.744	UPSTREAM CG4582 INTRON msi
3L	1281373	3L_1281373_SNP [dm3] 3L_1281373_SNP [dm6]	T	G	2.958e^-4	0.744	INTRON CG32333
2L	6835289	2L_6835289_SNP [dm3] 2L_6835289_SNP [dm6]	T	A	2.961e^-4	0.744	INTRON sens-2
3R	22959678	3R_22959678_SNP [dm3] 3R_27133956_SNP [dm6]	A	G	2.970e^-4	0.744	INTRON CG6051
X	15743391	X_15743391_SNP [dm3] X_15849358_SNP [dm6]	G	T	2.974e^-4	0.744	UPSTREAM sun DOWNSTREAM UBL3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3R	26485920	3R_26485920_SNP [dm3] 3R_30660198_SNP [dm6]	A	G	2.983e^-4	0.744	INTERGENIC
2L	8687257	2L_8687257_SNP [dm3] 2L_8687257_SNP [dm6]	T	C	2.983e^-4	0.744	UTR_3_PRIME Hnf4 DOWNSTREAM Trs23
3L	11878310	3L_11878310_SNP [dm3] 3L_11885210_SNP [dm6]	C	T	2.989e^-4	0.744	INTRON CG44837
2L	107776	2L_107776_SNP [dm3] 2L_107776_SNP [dm6]	T	G	2.990e^-4	0.744	UTR_5_PRIME Sam-S UPSTREAM Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	27783520	3R_27783520_SNP [dm3] 3R_31957798_SNP [dm6]	T	G	2.991e^-4	0.744	INTRON heph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12133445	2L_12133445_SNP [dm3] 2L_12133445_SNP [dm6]	C	T	2.996e^-4	0.744	UPSTREAM rho-6 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10080371	3L_10080371_SNP [dm3] 3L_10087271_SNP [dm6]	A	G	2.999e^-4	0.744	SYNONYMOUS_CODING CG14160 INTRON dpr6
2L	6318558	2L_6318558_SNP [dm3] 2L_6318558_SNP [dm6]	A	G	2.999e^-4	0.744	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11575698	3R_11575698_SNP [dm3] 3R_15749976_SNP [dm6]	A	G	3.011e^-4	0.744	INTERGENIC
X	12253270	X_12253270_SNP [dm3] X_12359237_SNP [dm6]	C	G	3.018e^-4	0.744	INTERGENIC
2L	21173867	2L_21173867_SNP [dm3] 2L_21173867_SNP [dm6]	T	A	3.027e^-4	0.744	DOWNSTREAM Acon & 1 other INTRON CG31627
3L	1187605	3L_1187605_DEL [dm3] 3L_1187605_DEL [dm6]	GTG	G	3.030e^-4	0.744	INTERGENIC
X	11239858	X_11239858_SNP [dm3] X_11345825_SNP [dm6]	C	A	3.030e^-4	0.744	SYNONYMOUS_CODING CG1597	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26924626	3R_26924626_SNP [dm3] 3R_31098904_SNP [dm6]	C	A	3.033e^-4	0.744	UTR_3_PRIME CG15553	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12136299	3L_12136299_SNP [dm3] 3L_12143199_SNP [dm6]	C	A	3.041e^-4	0.744	UTR_3_PRIME RhoGAP68F DOWNSTREAM CG5642
2R	10318386	2R_10318386_SNP [dm3] 2R_14430881_SNP [dm6]	C	T	3.043e^-4	0.744	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	99184	2L_99184_SNP [dm3] 2L_99184_SNP [dm6]	T	C	3.050e^-4	0.744	NON_SYNONYMOUS_CODING Zir	TF binding site mE1_TFBS_HSA
3L	1853845	3L_1853845_SNP [dm3] 3L_1853845_SNP [dm6]	A	G	3.053e^-4	0.744	INTRON CG13936
3L	17477554	3L_17477554_SNP [dm3] 3L_17484454_SNP [dm6]	G	T	3.053e^-4	0.744	INTRON CG6333
2L	10224021	2L_10224021_SNP [dm3] 2L_10224021_SNP [dm6]	C	T	3.055e^-4	0.744	SYNONYMOUS_CODING CG4908 DOWNSTREAM CG5708	TF binding site mE1_TFBS_sens
3L	12924704	3L_12924704_SNP [dm3] 3L_12931604_SNP [dm6]	G	C	3.063e^-4	0.744	INTERGENIC
2R	8983063	2R_8983063_SNP [dm3] 2R_13095558_SNP [dm6]	A	C	3.063e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	13280183	3R_13280183_SNP [dm3] 3R_17454461_SNP [dm6]	G	T	3.066e^-4	0.744	INTERGENIC
2R	4258038	2R_4258038_SNP [dm3] 2R_8370533_SNP [dm6]	T	G	3.066e^-4	0.744	UPSTREAM CG2127 & 1 other INTRON pdm3
X	14744362	X_14744362_SNP [dm3] X_14850329_SNP [dm6]	A	G	3.068e^-4	0.744	DOWNSTREAM CG9521 INTRON Flo2
3R	22959859	3R_22959859_SNP [dm3] 3R_27134137_SNP [dm6]	T	C	3.070e^-4	0.744	INTRON CG6051
3R	25587399	3R_25587399_DEL [dm3] 3R_29761677_DEL [dm6]	AACCTTTAATTTAA...	A	3.071e^-4	0.744	INTERGENIC
3L	1310844	3L_1310844_SNP [dm3] 3L_1310844_SNP [dm6]	C	G	3.072e^-4	0.744	SYNONYMOUS_CODING CG2469 DOWNSTREAM CG9186	TF binding site mE1_TFBS_cad
2L	6814043	2L_6814043_SNP [dm3] 2L_6814043_SNP [dm6]	G	T	3.073e^-4	0.744	DOWNSTREAM CR44081 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26486159	3R_26486159_SNP [dm3] 3R_30660437_SNP [dm6]	T	C	3.077e^-4	0.744	INTERGENIC
3R	25541799	3R_25541799_SNP [dm3] 3R_29716077_SNP [dm6]	A	G	3.078e^-4	0.744	UPSTREAM Dup99B DOWNSTREAM Obp99b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3L	15070323	3L_15070323_SNP [dm3] 3L_15077223_SNP [dm6]	G	A	3.079e^-4	0.744	SYNONYMOUS_CODING Or71a INTRON cp309
3L	16545576	3L_16545576_SNP [dm3] 3L_16552476_SNP [dm6]	T	A	3.079e^-4	0.744	INTERGENIC
3R	4809767	3R_4809767_SNP [dm3] 3R_8984045_SNP [dm6]	C	T	3.079e^-4	0.744	UPSTREAM CG11970 INTRON RagA-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8499038	2L_8499038_SNP [dm3] 2L_8499038_SNP [dm6]	T	C	3.092e^-4	0.744	INTRON Dh31
2R	15060277	2R_15060277_SNP [dm3] 2R_19172772_SNP [dm6]	T	C	3.093e^-4	0.744	SYNONYMOUS_CODING CG10737
X	3365611	X_3365611_SNP [dm3] X_3471578_SNP [dm6]	G	C	3.101e^-4	0.744	INTRON CR44999 & 1 other
3L	15055179	3L_15055179_SNP [dm3] 3L_15062079_SNP [dm6]	C	T	3.107e^-4	0.744	UPSTREAM CG13460 DOWNSTREAM CR43684 INTRON Sytbeta
3R	25541815	3R_25541815_SNP [dm3] 3R_29716093_SNP [dm6]	C	T	3.111e^-4	0.744	UPSTREAM Dup99B DOWNSTREAM Obp99b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3L	11418427	3L_11418427_SNP [dm3] 3L_11425327_SNP [dm6]	A	G	3.114e^-4	0.744	NON_SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
2L	12121045	2L_12121045_SNP [dm3] 2L_12121045_SNP [dm6]	T	A	3.115e^-4	0.744	INTRON CG17211	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12295572	X_12295572_SNP [dm3] X_12401539_SNP [dm6]	T	C	3.129e^-4	0.744	INTERGENIC
3R	8135405	3R_8135405_SNP [dm3] 3R_12309683_SNP [dm6]	A	C	3.133e^-4	0.744	INTERGENIC
3R	8147005	3R_8147005_SNP [dm3] 3R_12321283_SNP [dm6]	C	T	3.133e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	17618056	X_17618056_SNP [dm3] X_17724023_SNP [dm6]	T	A	3.134e^-4	0.744	INTRON CG42684
2R	14037144	2R_14037144_SNP [dm3] 2R_18149639_SNP [dm6]	C	T	3.139e^-4	0.744	NON_SYNONYMOUS_CODING CG5742 UTR_3_PRIME CG5742	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	11037875	2L_11037875_SNP [dm3] 2L_11037875_SNP [dm6]	A	C	3.141e^-4	0.744	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	21055024	3L_21055024_SNP [dm3] 3L_21061924_SNP [dm6]	A	G	3.144e^-4	0.744	INTRON siz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17447986	3R_17447986_SNP [dm3] 3R_21622264_SNP [dm6]	C	A	3.150e^-4	0.744	UPSTREAM mir-998 DOWNSTREAM mir-11 INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17540587	3L_17540587_DEL [dm3] 3L_17547487_DEL [dm6]	ATCTTAAGA	A	3.157e^-4	0.744	DOWNSTREAM Nedd4 & 1 other INTRON Jon74E	TF binding site mE1_TFBS_cad
2L	13942688	2L_13942688_SNP [dm3] 2L_13942688_SNP [dm6]	T	C	3.162e^-4	0.744	INTRON Ance-3
3L	8704804	3L_8704804_SNP [dm3] 3L_8711704_SNP [dm6]	G	C	3.162e^-4	0.744	INTERGENIC	regulatory region REDfly_CRMs
2L	3966089	2L_3966089_SNP [dm3] 2L_3966089_SNP [dm6]	A	T	3.165e^-4	0.744	INTRON fred
2L	3713331	2L_3713331_SNP [dm3] 2L_3713331_SNP [dm6]	C	T	3.165e^-4	0.744	UPSTREAM CG2818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	5725590	3L_5725590_SNP [dm3] 3L_5732490_SNP [dm6]	G	A	3.166e^-4	0.744	INTRON sif
3R	22860289	3R_22860289_SNP [dm3] 3R_27034567_SNP [dm6]	T	A	3.170e^-4	0.744	INTRON RYa-R	TF binding site BDTNP1_TFBS_da
3R	8170310	3R_8170310_SNP [dm3] 3R_12344588_SNP [dm6]	A	G	3.172e^-4	0.744	INTERGENIC
2L	6974940	2L_6974940_SNP [dm3] 2L_6974940_SNP [dm6]	T	C	3.172e^-4	0.744	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	12388049	2L_12388049_SNP [dm3] 2L_12388049_SNP [dm6]	T	C	3.172e^-4	0.744	INTRON bru-2
3R	9032349	3R_9032349_SNP [dm3] 3R_13206627_SNP [dm6]	T	A	3.177e^-4	0.744	INTERGENIC
3R	17879404	3R_17879404_SNP [dm3] 3R_22053682_SNP [dm6]	A	T	3.185e^-4	0.744	INTRON how
X	7596516	X_7596516_SNP [dm3] X_7702483_SNP [dm6]	T	C	3.188e^-4	0.744	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8399399	3L_8399399_SNP [dm3] 3L_8406299_SNP [dm6]	A	G	3.191e^-4	0.744	NON_SYNONYMOUS_CODING CG13667 DOWNSTREAM Oseg1	TF binding site mE1_TFBS_sens
2R	6652972	2R_6652972_SNP [dm3] 2R_10765467_SNP [dm6]	G	A	3.197e^-4	0.744	INTRON CG33144
3R	26924852	3R_26924852_SNP [dm3] 3R_31099130_SNP [dm6]	T	A	3.198e^-4	0.744	NON_SYNONYMOUS_CODING CG15553	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25886342	3R_25886342_SNP [dm3] 3R_30060620_SNP [dm6]	C	T	3.199e^-4	0.744	INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25886376	3R_25886376_SNP [dm3] 3R_30060654_SNP [dm6]	C	A	3.199e^-4	0.744	INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11418425	3L_11418425_SNP [dm3] 3L_11425325_SNP [dm6]	A	G	3.201e^-4	0.744	SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
2L	6454853	2L_6454853_SNP [dm3] 2L_6454853_SNP [dm6]	A	G	3.208e^-4	0.744	INTRON retm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	11689416	2R_11689416_SNP [dm3] 2R_15801911_SNP [dm6]	G	A	3.211e^-4	0.744	INTRON Zasp52 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	15114203	3R_15114203_SNP [dm3] 3R_19288481_SNP [dm6]	A	G	3.212e^-4	0.744	EXON CR43451
3L	20879272	3L_20879272_SNP [dm3] 3L_20886172_SNP [dm6]	A	G	3.223e^-4	0.744	UPSTREAM CG32432 DOWNSTREAM CR44686 INTERGENIC
3R	8362287	3R_8362287_SNP [dm3] 3R_12536565_SNP [dm6]	A	G	3.227e^-4	0.744	INTRON Octbeta3R
3R	6523866	3R_6523866_SNP [dm3] 3R_10698144_SNP [dm6]	G	A	3.227e^-4	0.744	NON_SYNONYMOUS_CODING CG14683 INTRON pug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10434897	X_10434897_INS [dm3] X_10540864_INS [dm6]	C	CC	3.228e^-4	0.744	INTRON spri	TF binding site BDTNP1_TFBS_twi
2L	16447220	2L_16447220_INS [dm3] 2L_16447220_INS [dm6]	T	TAAGCAAT	3.232e^-4	0.744	UPSTREAM Idgf2 DOWNSTREAM Idgf1 INTRON CG5888
X	2840833	X_2840833_INS [dm3] X_2946800_INS [dm6]	T	TATTTGTCAAATTGACACGT...	3.242e^-4	0.744	UPSTREAM CG17959 DOWNSTREAM CG14423 INTRON kirre
X	3279000	X_3279000_DEL [dm3] X_3384967_DEL [dm6]	AAGCT	TG	3.245e^-4	0.744	INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26371356	3R_26371356_INS [dm3] 3R_30545634_INS [dm6]	T	TA	3.250e^-4	0.744	UPSTREAM tmod INTRON tmod
2L	12209595	2L_12209595_SNP [dm3] 2L_12209595_SNP [dm6]	G	A	3.252e^-4	0.744	SYNONYMOUS_CODING CG31759 INTRON aret
3L	23117189	3L_23117189_SNP [dm3] 3L_23124089_SNP [dm6]	A	C	3.255e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	14381890	3R_14381890_DEL [dm3] 3R_18556168_DEL [dm6]	AG	A	3.262e^-4	0.744	INTERGENIC
2R	7581023	2R_7581023_SNP [dm3] 2R_11693518_SNP [dm6]	C	A	3.265e^-4	0.744	INTRON CG13197
3L	2559006	3L_2559006_SNP [dm3] 3L_2559006_SNP [dm6]	G	T	3.278e^-4	0.744	INTRON msn
2L	103619	2L_103619_SNP [dm3] 2L_103619_SNP [dm6]	T	C	3.280e^-4	0.744	SYNONYMOUS_CODING CG11377 DOWNSTREAM Nhe1 INTRON CG11377
2L	114763	2L_114763_SNP [dm3] 2L_114763_SNP [dm6]	A	G	3.280e^-4	0.744	UTR_5_PRIME CG11455 DOWNSTREAM Sam-S & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	12495747	3R_12495747_SNP [dm3] 3R_16670025_SNP [dm6]	T	C	3.286e^-4	0.744	INTRON Ubx
2L	18456896	2L_18456896_SNP [dm3] 2L_18456896_SNP [dm6]	A	C	3.287e^-4	0.744	INTRON let-7-C
3R	25947832	3R_25947832_SNP [dm3] 3R_30122110_SNP [dm6]	C	T	3.292e^-4	0.744	NON_SYNONYMOUS_CODING CG45072 DOWNSTREAM sima	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12200331	2L_12200331_SNP [dm3] 2L_12200331_SNP [dm6]	C	T	3.298e^-4	0.744	UPSTREAM aret INTRON aret
2L	3966098	2L_3966098_SNP [dm3] 2L_3966098_SNP [dm6]	A	T	3.298e^-4	0.744	INTRON fred
2L	20858026	2L_20858026_SNP [dm3] 2L_20858026_SNP [dm6]	C	T	3.299e^-4	0.744	UPSTREAM CG9336 & 1 other DOWNSTREAM twit INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8156335	3R_8156335_SNP [dm3] 3R_12330613_SNP [dm6]	A	C	3.301e^-4	0.744	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2358037	2L_2358037_SNP [dm3] 2L_2358037_SNP [dm6]	A	G	3.304e^-4	0.744	UTR_3_PRIME eys UPSTREAM CG9967
3R	15031727	3R_15031727_SNP [dm3] 3R_19206005_SNP [dm6]	T	A	3.305e^-4	0.744	INTERGENIC
3R	22954881	3R_22954881_SNP [dm3] 3R_27129159_SNP [dm6]	C	T	3.307e^-4	0.744	INTRON CG6051
3L	7919822	3L_7919822_SNP [dm3] 3L_7926722_SNP [dm6]	A	G	3.309e^-4	0.744	UTR_3_PRIME syd
2L	7224902	2L_7224902_SNP [dm3] 2L_7224902_SNP [dm6]	T	A	3.316e^-4	0.744	SYNONYMOUS_CODING Ndae1 INTRON Ndae1
3L	10286335	3L_10286335_SNP [dm3] 3L_10293235_SNP [dm6]	T	A	3.323e^-4	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5297073	X_5297073_SNP [dm3] X_5403040_SNP [dm6]	G	A	3.324e^-4	0.744	UTR_3_PRIME SK INTRON SK
3R	25886255	3R_25886255_DEL [dm3] 3R_30060533_DEL [dm6]	AT	A	3.326e^-4	0.744	INTRON sima	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9254532	2L_9254532_SNP [dm3] 2L_9254532_SNP [dm6]	A	G	3.326e^-4	0.744	SYNONYMOUS_CODING lectin-30A
3R	10875627	3R_10875627_SNP [dm3] 3R_15049905_SNP [dm6]	A	T	3.350e^-4	0.745	INTERGENIC
2L	11078246	2L_11078246_DEL [dm3] 2L_11078246_DEL [dm6]	CGACACGTCC	TATGAA	3.360e^-4	0.745	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	114577	2L_114577_SNP [dm3] 2L_114577_SNP [dm6]	C	T	3.362e^-4	0.745	UPSTREAM CG11455 DOWNSTREAM Sam-S & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	18475358	2R_18475358_DEL [dm3] 2R_22587853_DEL [dm6]	ACT	TG	3.378e^-4	0.745	INTRON dnr1
3L	16981678	3L_16981678_SNP [dm3] 3L_16988578_SNP [dm6]	T	C	3.378e^-4	0.745	INTRON Exn
3L	16981679	3L_16981679_SNP [dm3] 3L_16988579_SNP [dm6]	T	G	3.378e^-4	0.745	INTRON Exn
2L	10702533	2L_10702533_SNP [dm3] 2L_10702533_SNP [dm6]	A	G	3.381e^-4	0.745	SYNONYMOUS_CODING Lip2 UPSTREAM Lip1
3L	6987731	3L_6987731_SNP [dm3] 3L_6994631_SNP [dm6]	T	C	3.386e^-4	0.745	DOWNSTREAM bin INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2665512	2L_2665512_SNP [dm3] 2L_2665512_SNP [dm6]	A	G	3.386e^-4	0.745	NON_SYNONYMOUS_CODING CG9879
X	3530121	X_3530121_SNP [dm3] X_3636088_SNP [dm6]	T	C	3.387e^-4	0.745	INTRON AstA-R1
3L	10759040	3L_10759040_SNP [dm3] 3L_10765940_SNP [dm6]	T	C	3.388e^-4	0.745	INTERGENIC
2R	18853095	2R_18853095_INS [dm3] 2R_22965572_INS [dm6]	G	GG	3.391e^-4	0.745	INTERGENIC
2L	13069933	2L_13069933_SNP [dm3] 2L_13069933_SNP [dm6]	G	T	3.391e^-4	0.745	INTERGENIC
3L	13215380	3L_13215380_SNP [dm3] 3L_13222280_SNP [dm6]	G	T	3.392e^-4	0.745	INTERGENIC
X	17133556	X_17133556_SNP [dm3] X_17239523_SNP [dm6]	A	C	3.399e^-4	0.745	DOWNSTREAM CG8915 INTRON f
2L	12289536	2L_12289536_SNP [dm3] 2L_12289536_SNP [dm6]	G	A	3.403e^-4	0.745	INTRON aret
3L	10712242	3L_10712242_INS [dm3] 3L_10719142_INS [dm6]	A	ACTTCA	3.410e^-4	0.745	INTERGENIC
3R	15481664	3R_15481664_SNP [dm3] 3R_19655942_SNP [dm6]	T	A	3.413e^-4	0.745	INTRON CG6184	TF binding site BDTNP1_TFBS_dl
2R	9704018	2R_9704018_SNP [dm3] 2R_13816513_SNP [dm6]	G	A	3.414e^-4	0.745	INTRON stj
3R	8164115	3R_8164115_SNP [dm3] 3R_12338393_SNP [dm6]	C	T	3.420e^-4	0.745	INTRON CR44941
3R	8156176	3R_8156176_SNP [dm3] 3R_12330454_SNP [dm6]	G	A	3.423e^-4	0.745	DOWNSTREAM CR45583 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3995365	2L_3995365_SNP [dm3] 2L_3995365_SNP [dm6]	G	A	3.423e^-4	0.745	INTERGENIC
3R	14782146	3R_14782146_DEL [dm3] 3R_18956424_DEL [dm6]	TATTACTTATTGACTTAT...	T	3.426e^-4	0.745	INTRON CG42613 & 1 other
3R	14381830	3R_14381830_MNP [dm3] 3R_18556108_MNP [dm6]	AAT	GCA	3.432e^-4	0.745	INTERGENIC
X	9941667	X_9941667_SNP [dm3] X_10047634_SNP [dm6]	C	T	3.434e^-4	0.745	INTRON Cht6 EXON CR45185 & 1 other
3L	23256357	3L_23256357_SNP [dm3] 3L_23263257_SNP [dm6]	A	G	3.435e^-4	0.745	INTRON nAChRalpha4
2L	20818325	2L_20818325_SNP [dm3] 2L_20818325_SNP [dm6]	T	C	3.449e^-4	0.747	NON_SYNONYMOUS_CODING CheB38a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	98910	2L_98910_SNP [dm3] 2L_98910_SNP [dm6]	G	T	3.456e^-4	0.747	SYNONYMOUS_CODING Zir
2L	6318384	2L_6318384_SNP [dm3] 2L_6318384_SNP [dm6]	C	T	3.457e^-4	0.747	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5357775	3L_5357775_DEL [dm3] 3L_5364675_DEL [dm6]	TATT	T	3.460e^-4	0.747	INTRON Uev1A	TF binding site mE1_TFBS_inv
3L	17540611	3L_17540611_SNP [dm3] 3L_17547511_SNP [dm6]	G	C	3.463e^-4	0.747	DOWNSTREAM Nedd4 & 1 other INTRON Jon74E	TF binding site mE1_TFBS_cad
3R	15158831	3R_15158831_SNP [dm3] 3R_19333109_SNP [dm6]	G	A	3.468e^-4	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26943204	3R_26943204_SNP [dm3] 3R_31117482_SNP [dm6]	C	G	3.479e^-4	0.748	INTERGENIC
2L	103791	2L_103791_SNP [dm3] 2L_103791_SNP [dm6]	C	T	3.483e^-4	0.748	UTR_3_PRIME CG11377 DOWNSTREAM Nhe1 INTRON CG11377
3R	6243851	3R_6243851_SNP [dm3] 3R_10418129_SNP [dm6]	A	G	3.485e^-4	0.748	INTERGENIC
2L	16233003	2L_16233003_SNP [dm3] 2L_16233003_SNP [dm6]	T	C	3.494e^-4	0.749	INTRON CG42817
3R	10209290	3R_10209290_SNP [dm3] 3R_14383568_SNP [dm6]	T	C	3.499e^-4	0.749	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12128708	2L_12128708_SNP [dm3] 2L_12128708_SNP [dm6]	C	G	3.514e^-4	0.751	NON_SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3308757	2R_3308757_SNP [dm3] 2R_7421252_SNP [dm6]	G	C	3.522e^-4	0.752	INTRON so	TF binding site mE1_TFBS_chinmo
X	20042583	X_20042583_SNP [dm3] X_20148550_SNP [dm6]	C	G	3.537e^-4	0.754	INTRON CG9572
2R	9968368	2R_9968368_SNP [dm3] 2R_14080863_SNP [dm6]	A	T	3.543e^-4	0.754	INTRON Prosap
3L	12695459	3L_12695459_DEL [dm3] 3L_12702359_DEL [dm6]	CCCACAGTTTCAC...	C	3.554e^-4	0.754	INTRON mirr	TF binding site mE1_TFBS_HSA
3R	27861083	3R_27861083_SNP [dm3] 3R_32035361_SNP [dm6]	G	A	3.562e^-4	0.754	INTERGENIC
3R	21408333	3R_21408333_SNP [dm3] 3R_25582611_SNP [dm6]	G	T	3.562e^-4	0.754	SYNONYMOUS_CODING CG4582 INTRON msi	TF binding site mE1_TFBS_cad
2L	103074	2L_103074_SNP [dm3] 2L_103074_SNP [dm6]	C	T	3.564e^-4	0.754	NON_SYNONYMOUS_CODING CG11377 DOWNSTREAM Zir & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	115686	2L_115686_SNP [dm3] 2L_115686_SNP [dm6]	A	T	3.564e^-4	0.754	UTR_3_PRIME CG13694 INTRON CG11455	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11418386	3L_11418386_SNP [dm3] 3L_11425286_SNP [dm6]	G	A	3.568e^-4	0.754	SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
2R	8445400	2R_8445400_SNP [dm3] 2R_12557895_SNP [dm6]	C	A	3.581e^-4	0.754	INTRON fra	TF binding site mE1_TFBS_cad
2L	6368719	2L_6368719_SNP [dm3] 2L_6368719_SNP [dm6]	A	G	3.585e^-4	0.754	SYNONYMOUS_CODING CG9505	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26295817	3R_26295817_SNP [dm3] 3R_30470095_SNP [dm6]	C	T	3.588e^-4	0.754	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3419825	3L_3419825_SNP [dm3] 3L_3419825_SNP [dm6]	C	T	3.589e^-4	0.754	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8987558	3R_8987558_SNP [dm3] 3R_13161836_SNP [dm6]	T	G	3.605e^-4	0.754	INTRON timeout
2L	103512	2L_103512_SNP [dm3] 2L_103512_SNP [dm6]	T	A	3.621e^-4	0.754	DOWNSTREAM Nhe1 INTRON CG11377
3R	16739142	3R_16739142_SNP [dm3] 3R_20913420_SNP [dm6]	C	T	3.622e^-4	0.754	UPSTREAM snoRNA:CG31191-a & 1 other DOWNSTREAM CR44106 INTRON CG31191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5357812	3L_5357812_SNP [dm3] 3L_5364712_SNP [dm6]	T	C	3.625e^-4	0.754	INTRON Uev1A	TF binding site mE1_TFBS_inv
X	9941718	X_9941718_SNP [dm3] X_10047685_SNP [dm6]	C	T	3.629e^-4	0.754	INTRON Cht6 EXON CR45185 & 1 other	TF binding site BDTNP1_TFBS_twi
X	12405070	X_12405070_SNP [dm3] X_12511037_SNP [dm6]	A	G	3.633e^-4	0.754	INTRON CG2556
3R	27786656	3R_27786656_SNP [dm3] 3R_31960934_SNP [dm6]	C	A	3.635e^-4	0.754	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14116309	2R_14116309_SNP [dm3] 2R_18228804_SNP [dm6]	T	G	3.640e^-4	0.754	DOWNSTREAM CR45310 EXON CR45311
2R	12837968	2R_12837968_SNP [dm3] 2R_16950463_SNP [dm6]	C	T	3.644e^-4	0.754	SYNONYMOUS_CODING mute	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10611603	3L_10611603_SNP [dm3] 3L_10618503_SNP [dm6]	T	C	3.651e^-4	0.754	INTERGENIC
2R	6132199	2R_6132199_SNP [dm3] 2R_10244694_SNP [dm6]	A	G	3.657e^-4	0.754	INTRON Hdc
3R	20307747	3R_20307747_SNP [dm3] 3R_24482025_SNP [dm6]	T	A	3.660e^-4	0.754	INTERGENIC
2L	12120770	2L_12120770_SNP [dm3] 2L_12120770_SNP [dm6]	T	A	3.665e^-4	0.754	INTRON CG17211
3L	17477556	3L_17477556_SNP [dm3] 3L_17484456_SNP [dm6]	T	G	3.665e^-4	0.754	INTRON CG6333
3L	12438296	3L_12438296_SNP [dm3] 3L_12445196_SNP [dm6]	C	A	3.666e^-4	0.754	INTERGENIC
3R	27845578	3R_27845578_SNP [dm3] 3R_32019856_SNP [dm6]	T	C	3.668e^-4	0.754	EXON CR45557
3R	10218733	3R_10218733_SNP [dm3] 3R_14393011_SNP [dm6]	G	A	3.668e^-4	0.754	SYNONYMOUS_CODING cv-c
2R	13638022	2R_13638022_SNP [dm3] 2R_17750517_SNP [dm6]	T	A	3.669e^-4	0.754	DOWNSTREAM CG10931 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8516498	X_8516498_SNP [dm3] X_8622465_SNP [dm6]	T	A	3.678e^-4	0.754	INTERGENIC
2R	8445547	2R_8445547_SNP [dm3] 2R_12558042_SNP [dm6]	T	C	3.683e^-4	0.754	INTRON fra
2L	8507887	2L_8507887_SNP [dm3] 2L_8507887_SNP [dm6]	G	T	3.684e^-4	0.754	INTERGENIC
2L	15773482	2L_15773482_SNP [dm3] 2L_15773482_SNP [dm6]	A	T	3.684e^-4	0.754	UPSTREAM CG31826 INTERGENIC
3L	18158171	3L_18158171_SNP [dm3] 3L_18165071_SNP [dm6]	G	C	3.703e^-4	0.754	INTERGENIC
3L	16993206	3L_16993206_SNP [dm3] 3L_17000106_SNP [dm6]	T	G	3.711e^-4	0.754	INTRON CG3764
3R	14369045	3R_14369045_SNP [dm3] 3R_18543323_SNP [dm6]	A	T	3.717e^-4	0.754	INTRON fru
3R	19600614	3R_19600614_SNP [dm3] 3R_23774892_SNP [dm6]	G	A	3.724e^-4	0.754	SYNONYMOUS_CODING Nup98-96 UPSTREAM CG10208	TF binding site mE1_TFBS_HSA
2R	10845828	2R_10845828_SNP [dm3] 2R_14958323_SNP [dm6]	T	C	3.726e^-4	0.754	START_GAINED aPKC UTR_5_PRIME aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl
3L	5186058	3L_5186058_SNP [dm3] 3L_5192958_SNP [dm6]	A	G	3.727e^-4	0.754	INTRON shep
X	14608335	X_14608335_SNP [dm3] X_14714302_SNP [dm6]	A	T	3.733e^-4	0.754	INTRON NetB
2L	3300910	2L_3300910_SNP [dm3] 2L_3300910_SNP [dm6]	T	G	3.749e^-4	0.754	INTRON CG9663
3L	755521	3L_755521_SNP [dm3] 3L_755521_SNP [dm6]	G	A	3.757e^-4	0.754	UPSTREAM hng3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11625189	3L_11625189_SNP [dm3] 3L_11632089_SNP [dm6]	C	T	3.759e^-4	0.754	DOWNSTREAM CR45158 INTRON CG32091
3R	26455741	3R_26455741_DEL [dm3] 3R_30630019_DEL [dm6]	GGG	AA	3.759e^-4	0.754	UPSTREAM CG2267 INTERGENIC
2R	17391850	2R_17391850_SNP [dm3] 2R_21504345_SNP [dm6]	A	C	3.765e^-4	0.754	INTRON MESK2	TF binding site mE1_TFBS_inv
2R	17063609	2R_17063609_SNP [dm3] 2R_21176104_SNP [dm6]	C	G	3.767e^-4	0.754	INTRON Pu
2L	6107570	2L_6107570_SNP [dm3] 2L_6107570_SNP [dm6]	G	T	3.770e^-4	0.754	INTRON stai
2L	6114157	2L_6114157_SNP [dm3] 2L_6114157_SNP [dm6]	A	T	3.771e^-4	0.754	INTRON stai
2L	20842834	2L_20842834_SNP [dm3] 2L_20842834_SNP [dm6]	A	C	3.777e^-4	0.754	INTRON CG31676
2R	3308767	2R_3308767_SNP [dm3] 2R_7421262_SNP [dm6]	G	A	3.779e^-4	0.754	INTRON so	TF binding site mE1_TFBS_chinmo
3R	9884137	3R_9884137_SNP [dm3] 3R_14058415_SNP [dm6]	A	G	3.782e^-4	0.754	INTRON foxo
2L	116880	2L_116880_DEL [dm3] 2L_116880_DEL [dm6]	CACACCCAGAAAAATTATGA...	C	3.788e^-4	0.754	UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455	transposable element FlyBase
3R	14038616	3R_14038616_SNP [dm3] 3R_18212894_SNP [dm6]	G	A	3.792e^-4	0.754	SYNONYMOUS_CODING CG7985
2L	15326041	2L_15326041_SNP [dm3] 2L_15326041_SNP [dm6]	A	G	3.793e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26276431	3R_26276431_SNP [dm3] 3R_30450709_SNP [dm6]	T	A	3.794e^-4	0.754	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13488829	X_13488829_SNP [dm3] X_13594796_SNP [dm6]	C	A	3.804e^-4	0.754	INTRON up	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27754106	3R_27754106_SNP [dm3] 3R_31928384_SNP [dm6]	A	T	3.809e^-4	0.754	INTRON heph	TF binding site mE1_TFBS_h
3L	9241591	3L_9241591_SNP [dm3] 3L_9248491_SNP [dm6]	G	A	3.811e^-4	0.754	INTERGENIC
3R	15031706	3R_15031706_SNP [dm3] 3R_19205984_SNP [dm6]	A	G	3.813e^-4	0.754	INTERGENIC
3L	8361901	3L_8361901_SNP [dm3] 3L_8368801_SNP [dm6]	C	T	3.816e^-4	0.754	INTERGENIC
2R	12818090	2R_12818090_SNP [dm3] 2R_16930585_SNP [dm6]	A	G	3.828e^-4	0.754	INTRON Pkc53E
3L	10062418	3L_10062418_SNP [dm3] 3L_10069318_SNP [dm6]	C	G	3.828e^-4	0.754	INTRON dpr6
X	3530084	X_3530084_SNP [dm3] X_3636051_SNP [dm6]	A	G	3.829e^-4	0.754	INTRON AstA-R1
2L	1601843	2L_1601843_SNP [dm3] 2L_1601843_SNP [dm6]	A	G	3.835e^-4	0.754	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad
3L	2002930	3L_2002930_SNP [dm3] 3L_2002930_SNP [dm6]	G	A	3.837e^-4	0.754	DOWNSTREAM CG42841 INTERGENIC
3L	17477557	3L_17477557_SNP [dm3] 3L_17484457_SNP [dm6]	G	A	3.838e^-4	0.754	INTRON CG6333
2R	8983065	2R_8983065_SNP [dm3] 2R_13095560_SNP [dm6]	A	G	3.843e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	26276470	3R_26276470_SNP [dm3] 3R_30450748_SNP [dm6]	T	A	3.844e^-4	0.754	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9271115	3R_9271115_SNP [dm3] 3R_13445393_SNP [dm6]	A	G	3.847e^-4	0.754	INTERGENIC
3L	11119214	3L_11119214_SNP [dm3] 3L_11126114_SNP [dm6]	A	G	3.857e^-4	0.754	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3713251	2L_3713251_SNP [dm3] 2L_3713251_SNP [dm6]	T	C	3.860e^-4	0.754	UPSTREAM CG2818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	9834532	3R_9834532_SNP [dm3] 3R_14008810_SNP [dm6]	T	G	3.867e^-4	0.754	INTRON rdx
3L	5357784	3L_5357784_SNP [dm3] 3L_5364684_SNP [dm6]	C	T	3.872e^-4	0.754	INTRON Uev1A	TF binding site mE1_TFBS_inv
3R	26981530	3R_26981530_DEL [dm3] 3R_31155808_DEL [dm6]	GG	G	3.872e^-4	0.754	INTRON Gycbeta100B
2L	3975828	2L_3975828_SNP [dm3] 2L_3975828_SNP [dm6]	C	T	3.872e^-4	0.754	INTRON fred
2L	4335683	2L_4335683_SNP [dm3] 2L_4335683_SNP [dm6]	A	T	3.874e^-4	0.754	INTRON Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	8898213	2R_8898213_SNP [dm3] 2R_13010708_SNP [dm6]	G	A	3.877e^-4	0.754	INTERGENIC
3R	9292227	3R_9292227_SNP [dm3] 3R_13466505_SNP [dm6]	G	A	3.881e^-4	0.754	UPSTREAM CR17025 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24402325	3R_24402325_SNP [dm3] 3R_28576603_SNP [dm6]	C	T	3.894e^-4	0.754	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	22351587	3R_22351587_SNP [dm3] 3R_26525865_SNP [dm6]	A	G	3.895e^-4	0.754	INTRON plum	TF binding site mE1_TFBS_cnc
2L	1156238	2L_1156238_SNP [dm3] 2L_1156238_SNP [dm6]	T	A	3.899e^-4	0.754	UTR_5_PRIME capt INTRON capt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25541806	3R_25541806_SNP [dm3] 3R_29716084_SNP [dm6]	C	A	3.905e^-4	0.754	UPSTREAM Dup99B DOWNSTREAM Obp99b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
2L	18927726	2L_18927726_SNP [dm3] 2L_18927726_SNP [dm6]	G	A	3.906e^-4	0.754	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Kr
3L	9632105	3L_9632105_DEL [dm3] 3L_9639005_DEL [dm6]	ATATA	A	3.908e^-4	0.754	UTR_3_PRIME CG8329 UPSTREAM CG18179 INTRON fry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	7295410	3R_7295410_SNP [dm3] 3R_11469688_SNP [dm6]	A	G	3.910e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6592680	2L_6592680_SNP [dm3] 2L_6592680_SNP [dm6]	G	C	3.912e^-4	0.754	INTRON CG11319
3R	16878162	3R_16878162_SNP [dm3] 3R_21052440_SNP [dm6]	A	C	3.915e^-4	0.754	DOWNSTREAM Mvl INTRON Mvl
3L	3512336	3L_3512336_SNP [dm3] 3L_3512336_SNP [dm6]	A	G	3.919e^-4	0.754	SYNONYMOUS_CODING ImpE2	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
X	4257563	X_4257563_SNP [dm3] X_4363530_SNP [dm6]	C	T	3.920e^-4	0.754	UTR_3_PRIME norpA	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	13256828	3R_13256828_SNP [dm3] 3R_17431106_SNP [dm6]	C	G	3.921e^-4	0.754	INTRON CG5873	TF binding site mE1_TFBS_inv
3R	9641518	3R_9641518_SNP [dm3] 3R_13815796_SNP [dm6]	G	T	3.926e^-4	0.754	UPSTREAM CR43642 DOWNSTREAM CR43641 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4258169	2R_4258169_DEL [dm3] 2R_8370664_DEL [dm6]	TT	T	3.931e^-4	0.754	UPSTREAM CG2127 & 1 other INTRON pdm3	transposable element FlyBase
2L	13815331	2L_13815331_SNP [dm3] 2L_13815331_SNP [dm6]	A	T	3.935e^-4	0.754	INTRON Sos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9297074	3L_9297074_SNP [dm3] 3L_9303974_SNP [dm6]	G	A	3.935e^-4	0.754	INTERGENIC
3L	11309646	3L_11309646_SNP [dm3] 3L_11316546_SNP [dm6]	G	A	3.940e^-4	0.754	DOWNSTREAM CR44361 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14508919	X_14508919_SNP [dm3] X_14614886_SNP [dm6]	A	G	3.943e^-4	0.754	INTRON NetA	TF binding site BDTNP1_TFBS_da
X	12184724	X_12184724_SNP [dm3] X_12290691_SNP [dm6]	G	A	3.944e^-4	0.754	INTRON Ten-a
3L	13774527	3L_13774527_SNP [dm3] 3L_13781427_SNP [dm6]	G	T	3.948e^-4	0.754	INTRON bru-3
3R	19696319	3R_19696319_SNP [dm3] 3R_23870597_SNP [dm6]	A	T	3.948e^-4	0.754	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	9953449	2L_9953449_SNP [dm3] 2L_9953449_SNP [dm6]	T	A	3.956e^-4	0.754	SYNONYMOUS_CODING CG13126 UPSTREAM CG4709	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11687159	3R_11687159_SNP [dm3] 3R_15861437_SNP [dm6]	T	A	3.956e^-4	0.754	UTR_3_PRIME CG9632 INTRON CG31183
3R	5683338	3R_5683338_SNP [dm3] 3R_9857616_SNP [dm6]	G	T	3.967e^-4	0.754	INTRON Teh1
3R	17142110	3R_17142110_SNP [dm3] 3R_21316388_SNP [dm6]	T	A	3.972e^-4	0.754	UPSTREAM mir-4951 EXON Hsromega
3R	5974376	3R_5974376_SNP [dm3] 3R_10148654_SNP [dm6]	T	G	3.972e^-4	0.754	INTRON Invadolysin
3L	4003205	3L_4003205_SNP [dm3] 3L_4003205_SNP [dm6]	C	T	3.992e^-4	0.754	UPSTREAM CG14985 INTERGENIC
3R	17694846	3R_17694846_SNP [dm3] 3R_21869124_SNP [dm6]	A	G	4.005e^-4	0.754	SYNONYMOUS_CODING CG31174 DOWNSTREAM Cby
2L	3978671	2L_3978671_SNP [dm3] 2L_3978671_SNP [dm6]	T	A	4.009e^-4	0.754	INTRON fred
2R	11431279	2R_11431279_SNP [dm3] 2R_15543774_SNP [dm6]	C	T	4.013e^-4	0.754	SYNONYMOUS_CODING eIF2B-gamma DOWNSTREAM CG8192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	12570433	2L_12570433_SNP [dm3] 2L_12570433_SNP [dm6]	G	A	4.017e^-4	0.754	DOWNSTREAM CR44598 & 1 other INTERGENIC
3R	26943799	3R_26943799_SNP [dm3] 3R_31118077_SNP [dm6]	G	A	4.021e^-4	0.754	INTERGENIC
3L	17877976	3L_17877976_SNP [dm3] 3L_17884876_SNP [dm6]	C	G	4.022e^-4	0.754	UPSTREAM CG5506 DOWNSTREAM CR42548 INTERGENIC
2L	14500588	2L_14500588_SNP [dm3] 2L_14500588_SNP [dm6]	T	A	4.022e^-4	0.754	INTERGENIC	transposable element FlyBase
2L	13814654	2L_13814654_SNP [dm3] 2L_13814654_SNP [dm6]	G	A	4.024e^-4	0.754	SYNONYMOUS_CODING Sos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14552871	3R_14552871_SNP [dm3] 3R_18727149_SNP [dm6]	G	A	4.026e^-4	0.754	UPSTREAM CG7714 DOWNSTREAM CG7715 INTRON Cha
3R	26913715	3R_26913715_DEL [dm3] 3R_31087993_DEL [dm6]	AT	A	4.028e^-4	0.754	INTERGENIC
2R	17741126	2R_17741126_INS [dm3] 2R_21853621_INS [dm6]	C	CA	4.030e^-4	0.754	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12121865	2L_12121865_DEL [dm3] 2L_12121865_DEL [dm6]	GTGCCATACCATG...	G	4.033e^-4	0.754	INTRON CG17211
2R	20420169	2R_20420169_SNP [dm3] 2R_24532646_SNP [dm6]	C	A	4.033e^-4	0.754	SPLICE_SITE_REGION CG13585 DOWNSTREAM CG4622 INTRON CG13585
2L	5288577	2L_5288577_DEL [dm3] 2L_5288577_DEL [dm6]	CC	C	4.036e^-4	0.754	UPSTREAM vri DOWNSTREAM CR44742 EXON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3239143	2L_3239143_SNP [dm3] 2L_3239143_SNP [dm6]	A	T	4.049e^-4	0.754	INTERGENIC
3R	15158883	3R_15158883_DEL [dm3] 3R_19333161_DEL [dm6]	ATA	A	4.050e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi

By genomic position
Variant impact
Gene name

Mean phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results