DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.164e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02345
In_2R_NS	0.07297
In_3R_K	0.09167

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	10.0168	0.0067
In_3R_K	8.4465	0.0147
In_3R_Mo	7.3404	0.0255

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2041 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13142019	2L_13142019_SNP [dm3] 2L_13142019_SNP [dm6]	C	T	8.419e^-8	0.158	DOWNSTREAM CG9928 INTERGENIC
2L	3327989	2L_3327989_SNP [dm3] 2L_3327989_SNP [dm6]	C	T	3.043e^-7	0.237	SYNONYMOUS_CODING CG33282
2L	3328061	2L_3328061_SNP [dm3] 2L_3328061_SNP [dm6]	T	C	4.732e^-7	0.237	INTRON CG33282
2L	13141397	2L_13141397_SNP [dm3] 2L_13141397_SNP [dm6]	A	G	5.295e^-7	0.237	INTERGENIC
2R	6729634	2R_6729634_SNP [dm3] 2R_10842129_SNP [dm6]	C	G	6.328e^-7	0.237	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	13890252	2L_13890252_SNP [dm3] 2L_13890252_SNP [dm6]	C	T	8.290e^-7	0.259	INTRON CenG1A
X	4563075	X_4563075_SNP [dm3] X_4669042_SNP [dm6]	A	T	1.104e^-6	0.266	SYNONYMOUS_CODING rap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15677603	3L_15677603_SNP [dm3] 3L_15684503_SNP [dm6]	A	G	1.134e^-6	0.266	INTRON pgant8
3L	4080922	3L_4080922_SNP [dm3] 3L_4080922_SNP [dm6]	C	T	1.672e^-6	0.348	INTRON Gad1
2L	13890280	2L_13890280_DEL [dm3] 2L_13890280_DEL [dm6]	TT	T	2.016e^-6	0.378	INTRON CenG1A
3L	18019671	3L_18019671_SNP [dm3] 3L_18026571_SNP [dm6]	T	C	2.799e^-6	0.477	INTRON Eip75B
3L	15677575	3L_15677575_SNP [dm3] 3L_15684475_SNP [dm6]	A	C	3.166e^-6	0.495	INTRON pgant8
2R	2923216	2R_2923216_SNP [dm3] 2R_7035711_SNP [dm6]	T	A	3.861e^-6	0.524	DOWNSTREAM Tsp42Eh INTRON Tsp42Ei
2L	10114160	2L_10114160_SNP [dm3] 2L_10114160_SNP [dm6]	C	T	4.604e^-6	0.524	INTRON CG44153 & 1 other
2L	1901064	2L_1901064_SNP [dm3] 2L_1901064_SNP [dm6]	G	T	4.846e^-6	0.524	INTRON CG7337
3L	15677579	3L_15677579_SNP [dm3] 3L_15684479_SNP [dm6]	A	C	5.019e^-6	0.524	INTRON pgant8
2R	18099434	2R_18099434_SNP [dm3] 2R_22211929_SNP [dm6]	C	T	5.095e^-6	0.524	SYNONYMOUS_CODING CG11291 UPSTREAM ari-2	TF binding site mE1_TFBS_sens
3R	20258883	3R_20258883_INS [dm3] 3R_24433161_INS [dm6]	G	GGCGTGG	5.308e^-6	0.524	INTRON nAChRalpha1
3L	19158935	3L_19158935_SNP [dm3] 3L_19165835_SNP [dm6]	T	C	6.012e^-6	0.524	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18102102	2R_18102102_SNP [dm3] 2R_22214597_SNP [dm6]	G	A	6.101e^-6	0.524	INTRON ari-2	TF binding site BDTNP1_TFBS_dl
3R	3272711	3R_3272711_SNP [dm3] 3R_7446989_SNP [dm6]	T	C	6.147e^-6	0.524	INTERGENIC
X	14799320	X_14799320_SNP [dm3] X_14905287_SNP [dm6]	T	C	6.152e^-6	0.524	INTRON Flo2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9073108	2R_9073108_INS [dm3] 2R_13185603_INS [dm6]	T	TCT	6.788e^-6	0.554	UTR_3_PRIME Kdm4B UPSTREAM CG17724 INTRON CG17724 & 2 others	TF binding site mE1_TFBS_cad
3L	5329534	3L_5329534_INS [dm3] 3L_5336434_INS [dm6]	A	AA	7.719e^-6	0.59	INTERGENIC
X	10860319	X_10860319_SNP [dm3] X_10966286_SNP [dm6]	G	A	7.864e^-6	0.59	SYNONYMOUS_CODING C901
2L	13142031	2L_13142031_SNP [dm3] 2L_13142031_SNP [dm6]	C	T	8.211e^-6	0.592	DOWNSTREAM CG9928 INTERGENIC
X	10860396	X_10860396_SNP [dm3] X_10966363_SNP [dm6]	T	A	8.602e^-6	0.598	INTRON C901
2R	6729922	2R_6729922_SNP [dm3] 2R_10842417_SNP [dm6]	A	T	9.768e^-6	0.653	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24452306	3R_24452306_SNP [dm3] 3R_28626584_SNP [dm6]	C	A	1.067e^-5	0.653	INTRON CG10011
2L	13142029	2L_13142029_SNP [dm3] 2L_13142029_SNP [dm6]	T	C	1.095e^-5	0.653	DOWNSTREAM CG9928 INTERGENIC
2R	6730144	2R_6730144_SNP [dm3] 2R_10842639_SNP [dm6]	G	A	1.125e^-5	0.653	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11683420	2L_11683420_SNP [dm3] 2L_11683420_SNP [dm6]	T	G	1.232e^-5	0.653	INTERGENIC
3L	15677545	3L_15677545_SNP [dm3] 3L_15684445_SNP [dm6]	G	C	1.234e^-5	0.653	UPSTREAM CG7579 INTRON pgant8
2R	18100190	2R_18100190_SNP [dm3] 2R_22212685_SNP [dm6]	T	G	1.270e^-5	0.653	UTR_3_PRIME CG11291 UPSTREAM ari-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15677606	3L_15677606_SNP [dm3] 3L_15684506_SNP [dm6]	G	A	1.356e^-5	0.653	INTRON pgant8
2R	7255299	2R_7255299_SNP [dm3] 2R_11367794_SNP [dm6]	A	G	1.376e^-5	0.653	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3491236	2L_3491236_SNP [dm3] 2L_3491236_SNP [dm6]	A	T	1.456e^-5	0.653	UPSTREAM CG15414 INTERGENIC
2R	8913891	2R_8913891_SNP [dm3] 2R_13026386_SNP [dm6]	A	C	1.471e^-5	0.653	INTERGENIC
2R	8913868	2R_8913868_SNP [dm3] 2R_13026363_SNP [dm6]	C	G	1.483e^-5	0.653	INTERGENIC
3R	21726417	3R_21726417_SNP [dm3] 3R_25900695_SNP [dm6]	A	G	1.490e^-5	0.653	SYNONYMOUS_CODING CG31091 DOWNSTREAM MCO3
2L	3491286	2L_3491286_SNP [dm3] 2L_3491286_SNP [dm6]	G	A	1.506e^-5	0.653	UPSTREAM CG15414 INTERGENIC
3L	5939364	3L_5939364_SNP [dm3] 3L_5946264_SNP [dm6]	C	T	1.511e^-5	0.653	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2L	1433376	2L_1433376_INS [dm3] 2L_1433376_INS [dm6]	T	TCTAATTATTAAATCTAATT...	1.526e^-5	0.653	DOWNSTREAM snRNA:U3:22A INTERGENIC
2L	3487249	2L_3487249_SNP [dm3] 2L_3487249_SNP [dm6]	G	A	1.532e^-5	0.653	INTRON CG15414
2R	6868004	2R_6868004_SNP [dm3] 2R_10980499_SNP [dm6]	C	T	1.633e^-5	0.681	UTR_3_PRIME luna
3L	19162017	3L_19162017_SNP [dm3] 3L_19168917_SNP [dm6]	G	A	1.728e^-5	0.704	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18788304	3R_18788304_SNP [dm3] 3R_22962582_SNP [dm6]	G	A	1.774e^-5	0.704	DOWNSTREAM klg INTERGENIC
2R	9264654	2R_9264654_SNP [dm3] 2R_13377149_SNP [dm6]	C	T	1.906e^-5	0.704	SYNONYMOUS_CODING CG10814	TF binding site mE1_TFBS_chinmo
3R	25273949	3R_25273949_SNP [dm3] 3R_29448227_SNP [dm6]	G	C	1.949e^-5	0.704	INTRON Ptp99A
2R	18092484	2R_18092484_SNP [dm3] 2R_22204979_SNP [dm6]	G	A	1.954e^-5	0.704	SYNONYMOUS_CODING CG3292
2R	15839028	2R_15839028_SNP [dm3] 2R_19951523_SNP [dm6]	C	T	1.969e^-5	0.704	INTRON CG10822
X	12359745	X_12359745_SNP [dm3] X_12465712_SNP [dm6]	C	T	1.986e^-5	0.704	INTRON CG42258
2L	19203342	2L_19203342_SNP [dm3] 2L_19203342_SNP [dm6]	A	C	2.065e^-5	0.704	INTRON drl	regulatory region REDfly_CRMs
2R	9052709	2R_9052709_SNP [dm3] 2R_13165204_SNP [dm6]	T	A	2.112e^-5	0.704	INTRON GLaz
3R	21004616	3R_21004616_SNP [dm3] 3R_25178894_SNP [dm6]	T	C	2.138e^-5	0.704	INTRON lobo	TF binding site BDTNP1_TFBS_twi
2R	4735893	2R_4735893_SNP [dm3] 2R_8848388_SNP [dm6]	T	C	2.147e^-5	0.704	INTRON sns	TF binding site mE1_TFBS_cad
3R	22081566	3R_22081566_SNP [dm3] 3R_26255844_SNP [dm6]	C	A	2.175e^-5	0.704	DOWNSTREAM Ald INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd
X	12359853	X_12359853_INS [dm3] X_12465820_INS [dm6]	T	TT	2.220e^-5	0.704	INTRON CG42258
3L	2488536	3L_2488536_SNP [dm3] 3L_2488536_SNP [dm6]	C	T	2.233e^-5	0.704	UPSTREAM CG1146 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19202627	2L_19202627_SNP [dm3] 2L_19202627_SNP [dm6]	C	T	2.251e^-5	0.704	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2822648	2R_2822648_SNP [dm3] 2R_6935143_SNP [dm6]	G	A	2.424e^-5	0.708	INTRON mim	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19209375	2L_19209375_SNP [dm3] 2L_19209375_SNP [dm6]	T	C	2.485e^-5	0.708	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1200754	3L_1200754_INS [dm3] 3L_1200754_INS [dm6]	C	CAGTC	2.510e^-5	0.708	UPSTREAM mwh INTERGENIC
2R	18098835	2R_18098835_SNP [dm3] 2R_22211330_SNP [dm6]	A	C	2.640e^-5	0.708	UPSTREAM CG11291 & 1 other INTERGENIC
X	16518166	X_16518166_SNP [dm3] X_16624133_SNP [dm6]	C	T	2.660e^-5	0.708	DOWNSTREAM Rok INTRON Rok
3L	12036932	3L_12036932_SNP [dm3] 3L_12043832_SNP [dm6]	C	T	2.719e^-5	0.708	SYNONYMOUS_CODING CG6793 UPSTREAM CG43638 INTRON rols
2L	2944680	2L_2944680_SNP [dm3] 2L_2944680_SNP [dm6]	C	A	2.737e^-5	0.708	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3326832	2L_3326832_SNP [dm3] 2L_3326832_SNP [dm6]	G	A	2.810e^-5	0.708	DOWNSTREAM CG33281 INTERGENIC
2R	18092508	2R_18092508_SNP [dm3] 2R_22205003_SNP [dm6]	T	G	2.885e^-5	0.708	SPLICE_SITE_REGION CG3292 SYNONYMOUS_CODING CG3292
2L	8552696	2L_8552696_SNP [dm3] 2L_8552696_SNP [dm6]	A	T	2.965e^-5	0.708	INTRON Sema-1a
2R	2830978	2R_2830978_SNP [dm3] 2R_6943473_SNP [dm6]	T	A	3.046e^-5	0.708	INTRON mim & 1 other
3R	12811759	3R_12811759_SNP [dm3] 3R_16986037_SNP [dm6]	C	T	3.262e^-5	0.708	INTRON CG18622
2L	6127330	2L_6127330_SNP [dm3] 2L_6127330_SNP [dm6]	C	A	3.264e^-5	0.708	NON_SYNONYMOUS_CODING WDR79 DOWNSTREAM CG42730 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1433226	2L_1433226_SNP [dm3] 2L_1433226_SNP [dm6]	A	G	3.277e^-5	0.708	DOWNSTREAM snRNA:U3:22A INTERGENIC
2L	1433233	2L_1433233_SNP [dm3] 2L_1433233_SNP [dm6]	G	A	3.296e^-5	0.708	DOWNSTREAM snRNA:U3:22A INTERGENIC
2R	6719764	2R_6719764_SNP [dm3] 2R_10832259_SNP [dm6]	C	T	3.302e^-5	0.708	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	6107604	2R_6107604_SNP [dm3] 2R_10220099_SNP [dm6]	C	T	3.368e^-5	0.708	INTRON Hr46 & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18101723	2R_18101723_SNP [dm3] 2R_22214218_SNP [dm6]	T	C	3.400e^-5	0.708	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	19211488	2L_19211488_INS [dm3] 2L_19211488_INS [dm6]	A	AA	3.412e^-5	0.708	INTERGENIC
2R	18101253	2R_18101253_SNP [dm3] 2R_22213748_SNP [dm6]	A	G	3.428e^-5	0.708	INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	27306163	3R_27306163_SNP [dm3] 3R_31480441_SNP [dm6]	C	T	3.465e^-5	0.708	INTERGENIC
2R	18096443	2R_18096443_SNP [dm3] 2R_22208938_SNP [dm6]	G	T	3.530e^-5	0.708	UTR_3_PRIME CG3264 UPSTREAM CG3290
X	10874357	X_10874357_SNP [dm3] X_10980324_SNP [dm6]	A	G	3.617e^-5	0.708	INTRON CG42339
3R	13555073	3R_13555073_SNP [dm3] 3R_17729351_SNP [dm6]	A	G	3.632e^-5	0.708	SYNONYMOUS_CODING Lgr1
2L	3028336	2L_3028336_SNP [dm3] 2L_3028336_SNP [dm6]	G	A	3.634e^-5	0.708	UPSTREAM CG17219 INTRON CG3605	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	10860418	X_10860418_DEL [dm3] X_10966385_DEL [dm6]	AAA	A	3.691e^-5	0.708	INTRON C901
2R	18101176	2R_18101176_SNP [dm3] 2R_22213671_SNP [dm6]	C	T	3.794e^-5	0.708	DOWNSTREAM CG11291 INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	18101263	2R_18101263_SNP [dm3] 2R_22213758_SNP [dm6]	T	C	3.794e^-5	0.708	INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2R	4836972	2R_4836972_SNP [dm3] 2R_8949467_SNP [dm6]	G	A	3.946e^-5	0.708	DOWNSTREAM CG8229 INTRON CG8229 & 1 other
2R	18100250	2R_18100250_SNP [dm3] 2R_22212745_SNP [dm6]	A	G	3.948e^-5	0.708	UPSTREAM ari-2 DOWNSTREAM CG11291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	14803137	X_14803137_INS [dm3] X_14909104_INS [dm6]	C	CAC	3.997e^-5	0.708	UTR_5_PRIME CG9509 UPSTREAM CG9509 DOWNSTREAM CG14406 INTRON Flo2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	5933257	3L_5933257_SNP [dm3] 3L_5940157_SNP [dm6]	G	A	4.011e^-5	0.708	INTRON CG33993
X	12215558	X_12215558_SNP [dm3] X_12321525_SNP [dm6]	T	C	4.036e^-5	0.708	INTRON Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22079945	3R_22079945_SNP [dm3] 3R_26254223_SNP [dm6]	A	G	4.047e^-5	0.708	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
2R	4941580	2R_4941580_SNP [dm3] 2R_9054075_SNP [dm6]	T	C	4.061e^-5	0.708	INTRON CG13743
3L	14907908	3L_14907908_SNP [dm3] 3L_14914808_SNP [dm6]	G	T	4.080e^-5	0.708	INTRON DCX-EMAP
3R	18721529	3R_18721529_SNP [dm3] 3R_22895807_SNP [dm6]	G	C	4.082e^-5	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4835856	3L_4835856_SNP [dm3] 3L_4835856_SNP [dm6]	T	A	4.218e^-5	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4835861	3L_4835861_SNP [dm3] 3L_4835861_SNP [dm6]	C	G	4.218e^-5	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7460137	2L_7460137_SNP [dm3] 2L_7460137_SNP [dm6]	C	T	4.258e^-5	0.708	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18101197	2R_18101197_SNP [dm3] 2R_22213692_SNP [dm6]	T	A	4.262e^-5	0.708	DOWNSTREAM CG11291 INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
X	3179066	X_3179066_SNP [dm3] X_3285033_SNP [dm6]	A	C	4.298e^-5	0.708	INTRON dnc
2R	12285370	2R_12285370_SNP [dm3] 2R_16397865_SNP [dm6]	C	T	4.306e^-5	0.708	INTRON Sema-2b
3L	6179308	3L_6179308_SNP [dm3] 3L_6186208_SNP [dm6]	G	A	4.364e^-5	0.708	UTR_3_PRIME D19A DOWNSTREAM CG43293	TF binding site mE1_TFBS_cad
3L	18996791	3L_18996791_SNP [dm3] 3L_19003691_SNP [dm6]	A	T	4.451e^-5	0.708	UPSTREAM CG18136 DOWNSTREAM nkd INTERGENIC
2R	13697109	2R_13697109_SNP [dm3] 2R_17809604_SNP [dm6]	T	C	4.475e^-5	0.708	SYNONYMOUS_CODING grh	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
3L	4369802	3L_4369802_SNP [dm3] 3L_4369802_SNP [dm6]	C	T	4.478e^-5	0.708	INTRON DopEcR
2R	10438828	2R_10438828_DEL [dm3] 2R_14551323_DEL [dm6]	TT	T	4.555e^-5	0.708	INTRON ttv
2L	19207597	2L_19207597_SNP [dm3] 2L_19207597_SNP [dm6]	C	T	4.650e^-5	0.708	INTRON drl
2R	18068728	2R_18068728_SNP [dm3] 2R_22181223_SNP [dm6]	A	G	4.666e^-5	0.708	INTRON CG11170 & 1 other
2R	18096442	2R_18096442_SNP [dm3] 2R_22208937_SNP [dm6]	T	C	4.670e^-5	0.708	UTR_3_PRIME CG3264 UPSTREAM CG3290
3R	16827415	3R_16827415_MNP [dm3] 3R_21001693_MNP [dm6]	ACTTG	TGACC	4.677e^-5	0.708	INTRON Calx
2L	12571695	2L_12571695_SNP [dm3] 2L_12571695_SNP [dm6]	G	C	4.718e^-5	0.708	UPSTREAM CR44598 & 1 other INTERGENIC
2R	17942637	2R_17942637_DEL [dm3] 2R_22055132_DEL [dm6]	TT	C	4.720e^-5	0.708	INTERGENIC
2R	18081843	2R_18081843_SNP [dm3] 2R_22194338_SNP [dm6]	T	C	4.746e^-5	0.708	INTRON Swim
3R	19524318	3R_19524318_SNP [dm3] 3R_23698596_SNP [dm6]	C	T	4.786e^-5	0.708	SYNONYMOUS_CODING prt DOWNSTREAM CG31468	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	3272716	3R_3272716_DEL [dm3] 3R_7446994_DEL [dm6]	GCCTGGGACTTTATGTC...	AA	4.789e^-5	0.708	INTERGENIC
2R	13184438	2R_13184438_SNP [dm3] 2R_17296933_SNP [dm6]	C	T	4.944e^-5	0.708	INTRON mbl
3L	16645422	3L_16645422_SNP [dm3] 3L_16652322_SNP [dm6]	C	T	4.958e^-5	0.708	INTRON Baldspot	TF binding site mE1_TFBS_sens
2R	6719771	2R_6719771_SNP [dm3] 2R_10832266_SNP [dm6]	G	A	5.015e^-5	0.708	INTRON CG12344	TF binding site mE1_TFBS_inv
X	16429014	X_16429014_SNP [dm3] X_16534981_SNP [dm6]	T	G	5.030e^-5	0.708	INTERGENIC
2L	13247233	2L_13247233_SNP [dm3] 2L_13247233_SNP [dm6]	A	G	5.088e^-5	0.708	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9723986	2R_9723986_SNP [dm3] 2R_13836481_SNP [dm6]	A	G	5.090e^-5	0.708	UTR_5_PRIME CG6347
3R	3272741	3R_3272741_SNP [dm3] 3R_7447019_SNP [dm6]	G	C	5.158e^-5	0.708	INTERGENIC
X	9212139	X_9212139_SNP [dm3] X_9318106_SNP [dm6]	T	C	5.161e^-5	0.708	UTR_3_PRIME c12.1	TF binding site mE1_TFBS_cad
2R	18095939	2R_18095939_SNP [dm3] 2R_22208434_SNP [dm6]	G	A	5.203e^-5	0.708	UPSTREAM CG3290 DOWNSTREAM CG3264 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18096276	2R_18096276_SNP [dm3] 2R_22208771_SNP [dm6]	T	C	5.213e^-5	0.708	UTR_3_PRIME CG3264 UPSTREAM CG3290 DOWNSTREAM CG3264
2L	6127348	2L_6127348_SNP [dm3] 2L_6127348_SNP [dm6]	C	T	5.218e^-5	0.708	SYNONYMOUS_CODING WDR79 DOWNSTREAM CG42730 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19564773	3R_19564773_SNP [dm3] 3R_23739051_SNP [dm6]	C	T	5.220e^-5	0.708	INTRON Hmgcr
3R	14031382	3R_14031382_SNP [dm3] 3R_18205660_SNP [dm6]	A	G	5.236e^-5	0.708	INTRON CG7985
2R	2923353	2R_2923353_SNP [dm3] 2R_7035848_SNP [dm6]	A	T	5.256e^-5	0.708	DOWNSTREAM Tsp42Eh & 1 other INTRON Tsp42Ei
2R	6732910	2R_6732910_SNP [dm3] 2R_10845405_SNP [dm6]	C	T	5.260e^-5	0.708	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3326821	2L_3326821_SNP [dm3] 2L_3326821_SNP [dm6]	C	G	5.277e^-5	0.708	DOWNSTREAM CG33281 INTERGENIC
X	2135576	X_2135576_SNP [dm3] X_2241543_SNP [dm6]	A	T	5.311e^-5	0.708	UPSTREAM fs_1_K10 INTRON kz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	4369659	3L_4369659_SNP [dm3] 3L_4369659_SNP [dm6]	G	A	5.390e^-5	0.708	SYNONYMOUS_CODING DopEcR
3L	19173003	3L_19173003_SNP [dm3] 3L_19179903_SNP [dm6]	G	A	5.423e^-5	0.708	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15336772	2R_15336772_SNP [dm3] 2R_19449267_SNP [dm6]	C	T	5.429e^-5	0.708	INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	2822055	2R_2822055_DEL [dm3] 2R_6934550_DEL [dm6]	GATTTGTTGGATC...	G	5.461e^-5	0.708	INTRON mim	TF binding site mE1_TFBS_inv
3L	18025677	3L_18025677_SNP [dm3] 3L_18032577_SNP [dm6]	C	T	5.463e^-5	0.708	INTRON Eip75B
2L	11938322	2L_11938322_SNP [dm3] 2L_11938322_SNP [dm6]	A	T	5.480e^-5	0.708	SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
3L	5306804	3L_5306804_SNP [dm3] 3L_5313704_SNP [dm6]	T	C	5.506e^-5	0.708	INTERGENIC
2R	18079231	2R_18079231_SNP [dm3] 2R_22191726_SNP [dm6]	A	T	5.582e^-5	0.708	SYNONYMOUS_CODING Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8552678	2L_8552678_SNP [dm3] 2L_8552678_SNP [dm6]	T	A	5.651e^-5	0.708	INTRON Sema-1a
2R	8563425	2R_8563425_SNP [dm3] 2R_12675920_SNP [dm6]	A	G	5.686e^-5	0.708	UPSTREAM CG42708 INTRON CG42708	TF binding site mE1_TFBS_inv
3L	4369798	3L_4369798_DEL [dm3] 3L_4369798_DEL [dm6]	AA	A	5.693e^-5	0.708	INTRON DopEcR
3L	1469061	3L_1469061_SNP [dm3] 3L_1469061_SNP [dm6]	G	T	5.761e^-5	0.708	DOWNSTREAM rho INTRON Ptp61F
3L	15677490	3L_15677490_SNP [dm3] 3L_15684390_SNP [dm6]	T	C	5.765e^-5	0.708	UPSTREAM CG7579 INTRON pgant8
2R	2940041	2R_2940041_SNP [dm3] 2R_7052536_SNP [dm6]	G	A	5.780e^-5	0.708	UPSTREAM Tsp42En DOWNSTREAM lbm INTERGENIC	TF binding site mE1_TFBS_cad
2R	2821505	2R_2821505_SNP [dm3] 2R_6934000_SNP [dm6]	A	G	5.789e^-5	0.708	INTRON mim	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1391197	3L_1391197_SNP [dm3] 3L_1391197_SNP [dm6]	C	T	5.843e^-5	0.708	INTRON Ptp61F	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18092521	2R_18092521_SNP [dm3] 2R_22205016_SNP [dm6]	G	T	5.843e^-5	0.708	DOWNSTREAM CG3290 INTRON CG3292
3L	18996786	3L_18996786_SNP [dm3] 3L_19003686_SNP [dm6]	G	T	5.852e^-5	0.708	UPSTREAM CG18136 DOWNSTREAM nkd INTERGENIC
2L	20302808	2L_20302808_SNP [dm3] 2L_20302808_SNP [dm6]	C	A	5.924e^-5	0.708	INTERGENIC
2L	13247179	2L_13247179_SNP [dm3] 2L_13247179_SNP [dm6]	G	T	5.956e^-5	0.708	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16429015	X_16429015_SNP [dm3] X_16534982_SNP [dm6]	C	A	5.959e^-5	0.708	INTERGENIC
2R	2923695	2R_2923695_SNP [dm3] 2R_7036190_SNP [dm6]	A	G	5.975e^-5	0.708	NON_SYNONYMOUS_CODING Tsp42Ei DOWNSTREAM CG33914
2R	6719968	2R_6719968_SNP [dm3] 2R_10832463_SNP [dm6]	C	A	6.020e^-5	0.708	INTRON CG12344
2R	18085109	2R_18085109_SNP [dm3] 2R_22197604_SNP [dm6]	C	A	6.027e^-5	0.708	UPSTREAM snoRNA:Or-CD1 INTRON Swim	TF binding site BDTNP1_TFBS_dl
2R	18089983	2R_18089983_SNP [dm3] 2R_22202478_SNP [dm6]	A	T	6.126e^-5	0.708	INTRON Swim EXON CR45376
2R	9255855	2R_9255855_SNP [dm3] 2R_13368350_SNP [dm6]	G	A	6.162e^-5	0.708	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18082137	2R_18082137_SNP [dm3] 2R_22194632_SNP [dm6]	C	G	6.189e^-5	0.708	INTRON Swim
3L	5904338	3L_5904338_SNP [dm3] 3L_5911238_SNP [dm6]	G	T	6.293e^-5	0.708	INTRON CG13288
X	10860355	X_10860355_SNP [dm3] X_10966322_SNP [dm6]	C	T	6.373e^-5	0.708	SYNONYMOUS_CODING C901
X	12359593	X_12359593_SNP [dm3] X_12465560_SNP [dm6]	G	A	6.406e^-5	0.708	INTRON CG42258
X	12359906	X_12359906_SNP [dm3] X_12465873_SNP [dm6]	T	A	6.445e^-5	0.708	INTRON CG42258
3L	19101626	3L_19101626_SNP [dm3] 3L_19108526_SNP [dm6]	G	A	6.495e^-5	0.708	INTRON CG14082	TF binding site mE1_TFBS_inv
X	8401185	X_8401185_SNP [dm3] X_8507152_SNP [dm6]	G	C	6.497e^-5	0.708	INTRON CG33181	TF binding site mE1_TFBS_inv
2L	984901	2L_984901_SNP [dm3] 2L_984901_SNP [dm6]	C	G	6.530e^-5	0.708	INTERGENIC
3L	15647487	3L_15647487_SNP [dm3] 3L_15654387_SNP [dm6]	G	C	6.564e^-5	0.708	DOWNSTREAM Eig71Ee INTERGENIC
3R	26256477	3R_26256477_SNP [dm3] 3R_30430755_SNP [dm6]	C	T	6.597e^-5	0.708	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
3R	17779791	3R_17779791_SNP [dm3] 3R_21954069_SNP [dm6]	T	C	6.606e^-5	0.708	INTRON Eip93F
2R	18096261	2R_18096261_SNP [dm3] 2R_22208756_SNP [dm6]	T	G	6.608e^-5	0.708	UTR_3_PRIME CG3264 UPSTREAM CG3290 DOWNSTREAM CG3264
3R	27354108	3R_27354108_SNP [dm3] 3R_31528386_SNP [dm6]	T	C	6.678e^-5	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14799318	X_14799318_SNP [dm3] X_14905285_SNP [dm6]	G	T	6.692e^-5	0.708	INTRON Flo2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9172964	2R_9172964_SNP [dm3] 2R_13285459_SNP [dm6]	T	C	6.807e^-5	0.708	INTRON Dh31-R
3L	10930331	3L_10930331_SNP [dm3] 3L_10937231_SNP [dm6]	T	G	6.843e^-5	0.708	INTERGENIC
X	10862416	X_10862416_SNP [dm3] X_10968383_SNP [dm6]	A	T	6.843e^-5	0.708	UTR_3_PRIME CG42339
X	4731721	X_4731721_SNP [dm3] X_4837688_SNP [dm6]	T	C	6.908e^-5	0.708	INTERGENIC
3R	20397744	3R_20397744_SNP [dm3] 3R_24572022_SNP [dm6]	G	T	6.971e^-5	0.708	UTR_5_PRIME CG13624 UPSTREAM CG13624 INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12843365	X_12843365_SNP [dm3] X_12949332_SNP [dm6]	T	C	6.993e^-5	0.708	UTR_3_PRIME fne
3L	5329546	3L_5329546_SNP [dm3] 3L_5336446_SNP [dm6]	A	T	7.010e^-5	0.708	INTERGENIC
3L	13656806	3L_13656806_SNP [dm3] 3L_13663706_SNP [dm6]	T	C	7.011e^-5	0.708	INTRON bru-3
2R	6679423	2R_6679423_SNP [dm3] 2R_10791918_SNP [dm6]	C	T	7.115e^-5	0.708	SYNONYMOUS_CODING mthl13 INTRON CG33144
2L	2944519	2L_2944519_SNP [dm3] 2L_2944519_SNP [dm6]	A	G	7.208e^-5	0.708	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	18096287	2R_18096287_SNP [dm3] 2R_22208782_SNP [dm6]	G	C	7.274e^-5	0.708	UTR_3_PRIME CG3264 UPSTREAM CG3290 DOWNSTREAM CG3264
2L	17012650	2L_17012650_SNP [dm3] 2L_17012650_SNP [dm6]	C	G	7.303e^-5	0.708	INTRON CG6304
3R	16827411	3R_16827411_SNP [dm3] 3R_21001689_SNP [dm6]	G	A	7.349e^-5	0.708	INTRON Calx
X	4891383	X_4891383_SNP [dm3] X_4997350_SNP [dm6]	T	C	7.374e^-5	0.708	UPSTREAM CG12680 INTRON CR44833	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	16464761	2L_16464761_SNP [dm3] 2L_16464761_SNP [dm6]	A	C	7.401e^-5	0.708	INTERGENIC	regulatory region REDfly_CRMs
3R	19521168	3R_19521168_SNP [dm3] 3R_23695446_SNP [dm6]	G	A	7.450e^-5	0.708	SYNONYMOUS_CODING CG10252 UPSTREAM CG10254 DOWNSTREAM CR43903 & 1 other
2R	9635460	2R_9635460_SNP [dm3] 2R_13747955_SNP [dm6]	C	A	7.459e^-5	0.708	UTR_3_PRIME fas
3R	22004826	3R_22004826_SNP [dm3] 3R_26179104_SNP [dm6]	G	A	7.565e^-5	0.708	INTRON CG31323
X	12359693	X_12359693_SNP [dm3] X_12465660_SNP [dm6]	T	A	7.574e^-5	0.708	INTRON CG42258
3L	16354514	3L_16354514_SNP [dm3] 3L_16361414_SNP [dm6]	T	G	7.577e^-5	0.708	INTRON CG45057
2R	9251220	2R_9251220_SNP [dm3] 2R_13363715_SNP [dm6]	C	T	7.614e^-5	0.708	UPSTREAM CR45312 INTERGENIC
2L	12076383	2L_12076383_SNP [dm3] 2L_12076383_SNP [dm6]	A	T	7.627e^-5	0.708	INTRON CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8552652	2L_8552652_SNP [dm3] 2L_8552652_SNP [dm6]	G	A	7.633e^-5	0.708	INTRON Sema-1a
X	12359698	X_12359698_SNP [dm3] X_12465665_SNP [dm6]	G	T	7.649e^-5	0.708	INTRON CG42258
3L	9740030	3L_9740030_SNP [dm3] 3L_9746930_SNP [dm6]	G	A	7.683e^-5	0.708	INTRON CG42268
2R	18066148	2R_18066148_SNP [dm3] 2R_22178643_SNP [dm6]	T	C	7.761e^-5	0.708	UTR_5_PRIME CG11170 INTRON CG11170	TF binding site BDTNP1_TFBS_twi
3L	18016395	3L_18016395_SNP [dm3] 3L_18023295_SNP [dm6]	T	G	7.808e^-5	0.708	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26593721	3R_26593721_SNP [dm3] 3R_30767999_SNP [dm6]	A	T	7.829e^-5	0.708	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2R	10409425	2R_10409425_SNP [dm3] 2R_14521920_SNP [dm6]	T	G	7.830e^-5	0.708	INTERGENIC
2L	12076385	2L_12076385_SNP [dm3] 2L_12076385_SNP [dm6]	C	A	7.844e^-5	0.708	INTRON CG14947	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4626390	3L_4626390_SNP [dm3] 3L_4626390_SNP [dm6]	A	G	7.861e^-5	0.708	UPSTREAM Rpd3 & 1 other DOWNSTREAM CR45438 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	22309622	2L_22309622_SNP [dm3] 2L_22309622_SNP [dm6]	T	C	7.881e^-5	0.708	INTRON CG17018	transposable element FlyBase
3R	14597561	3R_14597561_SNP [dm3] 3R_18771839_SNP [dm6]	G	C	7.926e^-5	0.708	INTRON CG7720
2R	2866429	2R_2866429_SNP [dm3] 2R_6978924_SNP [dm6]	C	G	7.950e^-5	0.708	UPSTREAM CR44170 INTRON vimar
X	2061271	X_2061271_SNP [dm3] X_2167238_SNP [dm6]	C	T	7.951e^-5	0.708	INTRON CG3630
2R	11168986	2R_11168986_SNP [dm3] 2R_15281481_SNP [dm6]	C	A	8.005e^-5	0.708	INTRON Trpm
3L	5329642	3L_5329642_SNP [dm3] 3L_5336542_SNP [dm6]	C	A	8.085e^-5	0.708	INTERGENIC
2R	16022288	2R_16022288_SNP [dm3] 2R_20134783_SNP [dm6]	T	G	8.106e^-5	0.708	INTERGENIC
2R	2822053	2R_2822053_INS [dm3] 2R_6934548_INS [dm6]	T	TCTTATCT	8.133e^-5	0.708	INTRON mim	TF binding site mE1_TFBS_inv
2R	13184444	2R_13184444_SNP [dm3] 2R_17296939_SNP [dm6]	T	G	8.262e^-5	0.708	INTRON mbl
3R	1311618	3R_1311618_SNP [dm3] 3R_5485896_SNP [dm6]	C	A	8.294e^-5	0.708	SYNONYMOUS_CODING CG31550 DOWNSTREAM Hcs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	7253134	2R_7253134_SNP [dm3] 2R_11365629_SNP [dm6]	G	A	8.315e^-5	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12359791	X_12359791_SNP [dm3] X_12465758_SNP [dm6]	G	A	8.459e^-5	0.708	INTRON CG42258
2R	16954737	2R_16954737_SNP [dm3] 2R_21067232_SNP [dm6]	G	A	8.497e^-5	0.708	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
X	12359580	X_12359580_DEL [dm3] X_12465547_DEL [dm6]	AA	G	8.520e^-5	0.708	INTRON CG42258
2L	20526932	2L_20526932_SNP [dm3] 2L_20526932_SNP [dm6]	G	C	8.524e^-5	0.708	INTERGENIC
3R	16436717	3R_16436717_SNP [dm3] 3R_20610995_SNP [dm6]	C	A	8.529e^-5	0.708	SYNONYMOUS_CODING bon UTR_3_PRIME bon DOWNSTREAM CG15923	TF binding site mE1_TFBS_inv
3R	19564782	3R_19564782_SNP [dm3] 3R_23739060_SNP [dm6]	A	T	8.549e^-5	0.708	INTRON Hmgcr
X	12359841	X_12359841_SNP [dm3] X_12465808_SNP [dm6]	G	C	8.644e^-5	0.708	INTRON CG42258
2R	17718075	2R_17718075_SNP [dm3] 2R_21830570_SNP [dm6]	A	G	8.660e^-5	0.708	INTRON CG13492
2L	15517869	2L_15517869_SNP [dm3] 2L_15517869_SNP [dm6]	A	T	8.670e^-5	0.708	INTERGENIC
X	21945604	X_21945604_SNP [dm3] X_22543768_SNP [dm6]	G	A	8.689e^-5	0.708	SYNONYMOUS_CODING CG17599	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9417372	2R_9417372_SNP [dm3] 2R_13529867_SNP [dm6]	A	G	8.705e^-5	0.708	UTR_5_PRIME Vmat INTRON Vmat
2R	4825802	2R_4825802_SNP [dm3] 2R_8938297_SNP [dm6]	G	A	8.707e^-5	0.708	SYNONYMOUS_CODING FANCI
3R	25253363	3R_25253363_SNP [dm3] 3R_29427641_SNP [dm6]	A	T	8.719e^-5	0.708	INTRON Ptp99A
2L	14276326	2L_14276326_SNP [dm3] 2L_14276326_SNP [dm6]	T	G	8.739e^-5	0.708	UPSTREAM CG32971 INTRON wb & 1 other
2L	9874227	2L_9874227_SNP [dm3] 2L_9874227_SNP [dm6]	A	G	8.846e^-5	0.708	INTRON nAChRalpha6
2L	13247199	2L_13247199_SNP [dm3] 2L_13247199_SNP [dm6]	C	T	8.850e^-5	0.708	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16981669	3R_16981669_SNP [dm3] 3R_21155947_SNP [dm6]	A	G	8.854e^-5	0.708	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
2R	15339468	2R_15339468_SNP [dm3] 2R_19451963_SNP [dm6]	C	A	8.854e^-5	0.708	UPSTREAM CG7744 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3R	22025679	3R_22025679_SNP [dm3] 3R_26199957_SNP [dm6]	T	C	8.892e^-5	0.708	INTRON CR44320	TF binding site BDTNP1_TFBS_twi
2R	18085527	2R_18085527_SNP [dm3] 2R_22198022_SNP [dm6]	C	A	8.907e^-5	0.708	UPSTREAM snoRNA:Or-CD1 INTRON Swim
X	3779797	X_3779797_DEL [dm3] X_3885764_DEL [dm6]	CGT	C	8.980e^-5	0.709	INTRON CG15239
3L	19101629	3L_19101629_SNP [dm3] 3L_19108529_SNP [dm6]	T	G	9.030e^-5	0.709	INTRON CG14082	TF binding site mE1_TFBS_inv
2R	18095929	2R_18095929_SNP [dm3] 2R_22208424_SNP [dm6]	C	T	9.033e^-5	0.709	UPSTREAM CG3290 DOWNSTREAM CG3264 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7980516	2R_7980516_SNP [dm3] 2R_12093011_SNP [dm6]	C	T	9.093e^-5	0.711	INTRON jeb
3R	16827410	3R_16827410_SNP [dm3] 3R_21001688_SNP [dm6]	T	A	9.198e^-5	0.715	INTRON Calx
2L	6788718	2L_6788718_SNP [dm3] 2L_6788718_SNP [dm6]	G	T	9.232e^-5	0.715	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	8824131	3L_8824131_SNP [dm3] 3L_8831031_SNP [dm6]	G	T	9.262e^-5	0.715	INTRON dally	TF binding site BDTNP1_TFBS_dl
3R	22526719	3R_22526719_SNP [dm3] 3R_26700997_SNP [dm6]	G	A	9.333e^-5	0.717	INTRON amon
2R	14011478	2R_14011478_SNP [dm3] 2R_18123973_SNP [dm6]	A	C	9.384e^-5	0.718	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12078901	2L_12078901_SNP [dm3] 2L_12078901_SNP [dm6]	T	A	9.450e^-5	0.721	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	12359551	X_12359551_DEL [dm3] X_12465518_DEL [dm6]	AAACTAAGCACAAAAGTAAC...	A	9.572e^-5	0.722	INTRON CG42258
2L	15519363	2L_15519363_SNP [dm3] 2L_15519363_SNP [dm6]	C	A	9.592e^-5	0.722	INTERGENIC	TF binding site mE1_TFBS_inv
X	12359857	X_12359857_SNP [dm3] X_12465824_SNP [dm6]	A	C	9.609e^-5	0.722	INTRON CG42258
2L	8995394	2L_8995394_SNP [dm3] 2L_8995394_SNP [dm6]	G	C	9.630e^-5	0.722	NON_SYNONYMOUS_CODING CG17906 UTR_3_PRIME alien DOWNSTREAM alien
2L	7460292	2L_7460292_SNP [dm3] 2L_7460292_SNP [dm6]	A	G	9.678e^-5	0.723	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6770306	2L_6770306_SNP [dm3] 2L_6770306_SNP [dm6]	T	C	9.843e^-5	0.725	INTRON CG11321
X	3926446	X_3926446_SNP [dm3] X_4032413_SNP [dm6]	C	A	9.851e^-5	0.725	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17003475	3R_17003475_SNP [dm3] 3R_21177753_SNP [dm6]	A	G	9.895e^-5	0.725	INTRON SNF4Agamma
3L	7936244	3L_7936244_DEL [dm3] 3L_7943144_DEL [dm6]	ATACAAATGAATTGATATTG...	A	9.914e^-5	0.725	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14786978	3R_14786978_DEL [dm3] 3R_18961256_DEL [dm6]	TTT	T	9.920e^-5	0.725	INTRON CG42613 & 1 other
X	14586878	X_14586878_SNP [dm3] X_14692845_SNP [dm6]	T	A	9.931e^-5	0.725	INTRON NetB
3R	7958137	3R_7958137_SNP [dm3] 3R_12132415_SNP [dm6]	C	T	1.000e^-4	0.727	DOWNSTREAM tRNA:K5:87BC INTERGENIC
3L	8263715	3L_8263715_SNP [dm3] 3L_8270615_SNP [dm6]	T	C	1.014e^-4	0.73	INTRON Dscam4
3L	1199191	3L_1199191_SNP [dm3] 3L_1199191_SNP [dm6]	C	T	1.017e^-4	0.73	UTR_3_PRIME Aplip1
2R	15220684	2R_15220684_SNP [dm3] 2R_19333179_SNP [dm6]	A	T	1.017e^-4	0.73	INTRON Rgk1 & 1 other
2L	4069772	2L_4069772_DEL [dm3] 2L_4069772_DEL [dm6]	AAATA	A	1.020e^-4	0.73	INTRON ed
2R	19222085	2R_19222085_SNP [dm3] 2R_23334562_SNP [dm6]	C	T	1.033e^-4	0.736	INTERGENIC
3R	19886009	3R_19886009_SNP [dm3] 3R_24060287_SNP [dm6]	A	G	1.039e^-4	0.738	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_sens
2R	6679568	2R_6679568_SNP [dm3] 2R_10792063_SNP [dm6]	T	A	1.043e^-4	0.738	INTRON CG33144 & 1 other
X	12359757	X_12359757_SNP [dm3] X_12465724_SNP [dm6]	A	G	1.053e^-4	0.743	INTRON CG42258
3L	6974919	3L_6974919_SNP [dm3] 3L_6981819_SNP [dm6]	C	T	1.060e^-4	0.744	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6713957	2R_6713957_SNP [dm3] 2R_10826452_SNP [dm6]	G	A	1.063e^-4	0.744	SYNONYMOUS_CODING CG12325 DOWNSTREAM CG12344
3R	17484639	3R_17484639_SNP [dm3] 3R_21658917_SNP [dm6]	T	C	1.099e^-4	0.765	INTRON E2f	TF binding site mE1_TFBS_sens
3L	5351326	3L_5351326_SNP [dm3] 3L_5358226_SNP [dm6]	A	C	1.103e^-4	0.765	SYNONYMOUS_CODING Klp64D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10452026	2L_10452026_SNP [dm3] 2L_10452026_SNP [dm6]	C	A	1.107e^-4	0.765	DOWNSTREAM CG5322 INTRON ppk10
3R	24452494	3R_24452494_SNP [dm3] 3R_28626772_SNP [dm6]	C	A	1.109e^-4	0.765	INTRON CG10011
2L	16870627	2L_16870627_SNP [dm3] 2L_16870627_SNP [dm6]	C	T	1.115e^-4	0.766	EXON CR31781
X	15370695	X_15370695_SNP [dm3] X_15476662_SNP [dm6]	C	T	1.123e^-4	0.769	INTRON CG6324	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18083175	2R_18083175_SNP [dm3] 2R_22195670_SNP [dm6]	T	G	1.133e^-4	0.773	INTRON Swim
2R	7255690	2R_7255690_SNP [dm3] 2R_11368185_SNP [dm6]	T	C	1.149e^-4	0.776	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl
2R	18100323	2R_18100323_SNP [dm3] 2R_22212818_SNP [dm6]	A	G	1.152e^-4	0.776	UPSTREAM ari-2 DOWNSTREAM CG11291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17982177	3R_17982177_SNP [dm3] 3R_22156455_SNP [dm6]	G	A	1.172e^-4	0.776	INTRON SKIP
2R	2823614	2R_2823614_SNP [dm3] 2R_6936109_SNP [dm6]	T	C	1.177e^-4	0.776	NON_SYNONYMOUS_CODING mim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12359678	X_12359678_SNP [dm3] X_12465645_SNP [dm6]	A	T	1.180e^-4	0.776	INTRON CG42258
2R	2823693	2R_2823693_SNP [dm3] 2R_6936188_SNP [dm6]	C	G	1.182e^-4	0.776	SYNONYMOUS_CODING mim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15396107	2L_15396107_SNP [dm3] 2L_15396107_SNP [dm6]	T	C	1.188e^-4	0.776	UPSTREAM CR44859 INTERGENIC
2R	4827223	2R_4827223_SNP [dm3] 2R_8939718_SNP [dm6]	C	T	1.190e^-4	0.776	SYNONYMOUS_CODING FANCI UPSTREAM CG13748
2R	4827844	2R_4827844_SNP [dm3] 2R_8940339_SNP [dm6]	C	A	1.190e^-4	0.776	UPSTREAM CG13748 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20036378	2L_20036378_SNP [dm3] 2L_20036378_SNP [dm6]	G	C	1.192e^-4	0.776	INTRON sNPF
3R	22092944	3R_22092944_SNP [dm3] 3R_26267222_SNP [dm6]	A	G	1.194e^-4	0.776	INTRON CG6154
2R	9564198	2R_9564198_INS [dm3] 2R_13676693_INS [dm6]	A	ACA	1.199e^-4	0.776	INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13247165	2L_13247165_SNP [dm3] 2L_13247165_SNP [dm6]	C	A	1.200e^-4	0.776	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4562500	X_4562500_SNP [dm3] X_4668467_SNP [dm6]	C	T	1.204e^-4	0.776	SYNONYMOUS_CODING rap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20340534	2L_20340534_SNP [dm3] 2L_20340534_SNP [dm6]	A	G	1.220e^-4	0.776	DOWNSTREAM spir INTRON spir
2R	4735947	2R_4735947_SNP [dm3] 2R_8848442_SNP [dm6]	C	T	1.235e^-4	0.776	INTRON sns	TF binding site mE1_TFBS_cad
X	15602930	X_15602930_SNP [dm3] X_15708897_SNP [dm6]	G	T	1.235e^-4	0.776	SYNONYMOUS_CODING CG9281	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9874228	2L_9874228_SNP [dm3] 2L_9874228_SNP [dm6]	G	C	1.255e^-4	0.776	INTRON nAChRalpha6
2L	13890446	2L_13890446_SNP [dm3] 2L_13890446_SNP [dm6]	A	C	1.258e^-4	0.776	INTRON CenG1A
X	4381117	X_4381117_SNP [dm3] X_4487084_SNP [dm6]	T	C	1.263e^-4	0.776	INTRON CR32773
2L	10114151	2L_10114151_SNP [dm3] 2L_10114151_SNP [dm6]	C	T	1.267e^-4	0.776	INTRON CG44153 & 1 other
3R	12486943	3R_12486943_DEL [dm3] 3R_16661221_DEL [dm6]	TT	T	1.275e^-4	0.776	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8552704	2L_8552704_SNP [dm3] 2L_8552704_SNP [dm6]	G	T	1.295e^-4	0.776	INTRON Sema-1a
3L	2619544	3L_2619544_SNP [dm3] 3L_2619544_SNP [dm6]	G	A	1.297e^-4	0.776	INTRON Pxn
X	12399275	X_12399275_SNP [dm3] X_12505242_SNP [dm6]	G	T	1.300e^-4	0.776	INTRON CG2556
X	10860660	X_10860660_SNP [dm3] X_10966627_SNP [dm6]	T	A	1.305e^-4	0.776	INTRON C901
3L	5345198	3L_5345198_SNP [dm3] 3L_5352098_SNP [dm6]	G	A	1.307e^-4	0.776	UPSTREAM lama INTRON lama	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
X	2500331	X_2500331_SNP [dm3] X_2606298_SNP [dm6]	G	A	1.309e^-4	0.776	SYNONYMOUS_CODING Zw10 DOWNSTREAM Bzd	TF binding site mE1_TFBS_chinmo
2L	19203753	2L_19203753_SNP [dm3] 2L_19203753_SNP [dm6]	T	G	1.310e^-4	0.776	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	4492667	3L_4492667_SNP [dm3] 3L_4492667_SNP [dm6]	A	G	1.311e^-4	0.776	INTERGENIC
2L	8552745	2L_8552745_SNP [dm3] 2L_8552745_SNP [dm6]	C	G	1.314e^-4	0.776	INTRON Sema-1a
X	5548040	X_5548040_SNP [dm3] X_5654007_SNP [dm6]	A	G	1.316e^-4	0.776	SYNONYMOUS_CODING CG42265	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5935068	3L_5935068_SNP [dm3] 3L_5941968_SNP [dm6]	T	A	1.316e^-4	0.776	INTRON CG33993
3L	5937260	3L_5937260_SNP [dm3] 3L_5944160_SNP [dm6]	C	G	1.316e^-4	0.776	INTRON CG33993
3L	5939023	3L_5939023_INS [dm3] 3L_5945923_INS [dm6]	C	ATGT	1.316e^-4	0.776	INTRON CG33993	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1429936	2L_1429936_SNP [dm3] 2L_1429936_SNP [dm6]	T	C	1.320e^-4	0.776	DOWNSTREAM CG43401 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16967596	2R_16967596_SNP [dm3] 2R_21080091_SNP [dm6]	A	T	1.321e^-4	0.776	UPSTREAM Treh INTRON Treh
2R	19357389	2R_19357389_DEL [dm3] 2R_23469866_DEL [dm6]	GG	G	1.321e^-4	0.776	DOWNSTREAM Or59b INTRON CG43795
2R	18101725	2R_18101725_SNP [dm3] 2R_22214220_SNP [dm6]	A	G	1.322e^-4	0.776	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8771675	2L_8771675_SNP [dm3] 2L_8771675_SNP [dm6]	C	T	1.335e^-4	0.776	NON_SYNONYMOUS_CODING CG9465
2L	8552691	2L_8552691_SNP [dm3] 2L_8552691_SNP [dm6]	C	A	1.338e^-4	0.776	INTRON Sema-1a
3R	16827094	3R_16827094_DEL [dm3] 3R_21001372_DEL [dm6]	GAAGGAAATAATG...	G	1.339e^-4	0.776	INTRON Calx
2R	10573943	2R_10573943_SNP [dm3] 2R_14686438_SNP [dm6]	G	T	1.345e^-4	0.776	INTRON mspo
2L	16319451	2L_16319451_SNP [dm3] 2L_16319451_SNP [dm6]	T	A	1.370e^-4	0.776	INTRON cact	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	10798333	X_10798333_SNP [dm3] X_10904300_SNP [dm6]	G	A	1.370e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20302806	2L_20302806_SNP [dm3] 2L_20302806_SNP [dm6]	A	G	1.373e^-4	0.776	INTERGENIC
2L	12944937	2L_12944937_SNP [dm3] 2L_12944937_SNP [dm6]	G	A	1.376e^-4	0.776	INTERGENIC
X	16224460	X_16224460_SNP [dm3] X_16330427_SNP [dm6]	A	T	1.384e^-4	0.776	DOWNSTREAM CG9921 INTRON CG9919	TF binding site BDTNP1_TFBS_dl
2R	11868978	2R_11868978_SNP [dm3] 2R_15981473_SNP [dm6]	C	T	1.386e^-4	0.776	SYNONYMOUS_CODING Strn-Mlck
3L	19312786	3L_19312786_SNP [dm3] 3L_19319686_SNP [dm6]	G	C	1.395e^-4	0.776	INTRON pip
2L	17742735	2L_17742735_SNP [dm3] 2L_17742735_SNP [dm6]	A	G	1.403e^-4	0.776	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16987282	3R_16987282_SNP [dm3] 3R_21161560_SNP [dm6]	A	G	1.408e^-4	0.776	UPSTREAM CG10824 INTRON SNF4Agamma
2R	8556428	2R_8556428_INS [dm3] 2R_12668923_INS [dm6]	G	GGG	1.421e^-4	0.776	INTRON nemy
X	12359236	X_12359236_SNP [dm3] X_12465203_SNP [dm6]	G	T	1.423e^-4	0.776	INTRON CG42258
X	12359811	X_12359811_SNP [dm3] X_12465778_SNP [dm6]	A	C	1.426e^-4	0.776	INTRON CG42258
X	12359834	X_12359834_SNP [dm3] X_12465801_SNP [dm6]	T	A	1.427e^-4	0.776	INTRON CG42258
3L	18019681	3L_18019681_SNP [dm3] 3L_18026581_SNP [dm6]	A	G	1.428e^-4	0.776	INTRON Eip75B
2R	7253679	2R_7253679_SNP [dm3] 2R_11366174_SNP [dm6]	C	T	1.430e^-4	0.776	UPSTREAM CG13204 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9055154	2R_9055154_SNP [dm3] 2R_13167649_SNP [dm6]	C	A	1.430e^-4	0.776	UPSTREAM Spt-I DOWNSTREAM CR45142 INTRON GLaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
X	10271456	X_10271456_SNP [dm3] X_10377423_SNP [dm6]	G	A	1.433e^-4	0.776	SYNONYMOUS_CODING CG32681 DOWNSTREAM CG2898 INTRON CG17841	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2619856	3L_2619856_DEL [dm3] 3L_2619856_DEL [dm6]	TT	T	1.436e^-4	0.776	INTRON Pxn
3R	17335911	3R_17335911_SNP [dm3] 3R_21510189_SNP [dm6]	T	C	1.437e^-4	0.776	INTRON C15	TF binding site mE1_TFBS_HSA
3L	13842133	3L_13842133_SNP [dm3] 3L_13849033_SNP [dm6]	A	T	1.438e^-4	0.776	INTRON Hml
2L	3743629	2L_3743629_SNP [dm3] 2L_3743629_SNP [dm6]	G	A	1.440e^-4	0.776	INTRON CG10019
2L	3487469	2L_3487469_SNP [dm3] 2L_3487469_SNP [dm6]	A	C	1.450e^-4	0.776	INTRON CG15414
2L	3487489	2L_3487489_SNP [dm3] 2L_3487489_SNP [dm6]	A	T	1.450e^-4	0.776	INTRON CG15414
X	18621205	X_18621205_SNP [dm3] X_18727172_SNP [dm6]	T	C	1.452e^-4	0.776	UPSTREAM CCKLR-17D1 INTERGENIC
2R	18092514	2R_18092514_SNP [dm3] 2R_22205009_SNP [dm6]	C	A	1.456e^-4	0.776	SPLICE_SITE_REGION CG3292 DOWNSTREAM CG3290 INTRON CG3292
2R	10409334	2R_10409334_SNP [dm3] 2R_14521829_SNP [dm6]	T	G	1.458e^-4	0.776	INTERGENIC
3L	5333403	3L_5333403_SNP [dm3] 3L_5340303_SNP [dm6]	A	G	1.470e^-4	0.776	INTERGENIC
X	12359629	X_12359629_SNP [dm3] X_12465596_SNP [dm6]	A	G	1.472e^-4	0.776	INTRON CG42258
X	20842372	X_20842372_SNP [dm3] X_20971345_SNP [dm6]	T	C	1.474e^-4	0.776	INTERGENIC
3R	16981500	3R_16981500_DEL [dm3] 3R_21155778_DEL [dm6]	TGTACAT	T	1.476e^-4	0.776	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	6719908	2R_6719908_SNP [dm3] 2R_10832403_SNP [dm6]	C	T	1.478e^-4	0.776	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	2779088	2R_2779088_SNP [dm3] 2R_6891583_SNP [dm6]	C	G	1.483e^-4	0.776	UPSTREAM CG30158 INTERGENIC
3L	7157004	3L_7157004_SNP [dm3] 3L_7163904_SNP [dm6]	A	G	1.486e^-4	0.776	INTRON Dscam2
3L	5125444	3L_5125444_SNP [dm3] 3L_5132344_SNP [dm6]	G	A	1.491e^-4	0.776	DOWNSTREAM CG15213 & 1 other INTERGENIC
2L	17547651	2L_17547651_SNP [dm3] 2L_17547651_SNP [dm6]	G	A	1.495e^-4	0.776	EXON CR45697
3L	15647477	3L_15647477_SNP [dm3] 3L_15654377_SNP [dm6]	T	C	1.497e^-4	0.776	DOWNSTREAM Eig71Ee INTERGENIC
3R	19524356	3R_19524356_SNP [dm3] 3R_23698634_SNP [dm6]	A	C	1.502e^-4	0.776	DOWNSTREAM CG31468 INTRON prt	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	3078181	3R_3078181_DEL [dm3] 3R_7252459_DEL [dm6]	GTTTT	A	1.508e^-4	0.776	UTR_3_PRIME Gld UPSTREAM Obp84a DOWNSTREAM CG10050
2R	16022477	2R_16022477_SNP [dm3] 2R_20134972_SNP [dm6]	T	C	1.512e^-4	0.776	INTERGENIC
3R	16981874	3R_16981874_SNP [dm3] 3R_21156152_SNP [dm6]	T	C	1.517e^-4	0.776	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13247274	2L_13247274_SNP [dm3] 2L_13247274_SNP [dm6]	T	C	1.517e^-4	0.776	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18997416	3R_18997416_SNP [dm3] 3R_23171694_SNP [dm6]	T	A	1.523e^-4	0.776	INTRON Irk1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6719659	2R_6719659_SNP [dm3] 2R_10832154_SNP [dm6]	A	C	1.527e^-4	0.776	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	4825704	2R_4825704_SNP [dm3] 2R_8938199_SNP [dm6]	C	A	1.532e^-4	0.776	SPLICE_SITE_REGION FANCI SYNONYMOUS_CODING FANCI
2R	6719707	2R_6719707_SNP [dm3] 2R_10832202_SNP [dm6]	C	T	1.537e^-4	0.776	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	9055518	2R_9055518_SNP [dm3] 2R_13168013_SNP [dm6]	G	A	1.543e^-4	0.776	START_GAINED GLaz UTR_5_PRIME GLaz UPSTREAM Spt-I DOWNSTREAM CR45142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13842265	3L_13842265_SNP [dm3] 3L_13849165_SNP [dm6]	T	C	1.543e^-4	0.776	SYNONYMOUS_CODING Hml
3R	17780986	3R_17780986_SNP [dm3] 3R_21955264_SNP [dm6]	G	C	1.545e^-4	0.776	INTRON Eip93F
X	10859600	X_10859600_SNP [dm3] X_10965567_SNP [dm6]	T	C	1.550e^-4	0.776	INTRON C901	TF binding site mE1_TFBS_chinmo
3L	13842803	3L_13842803_SNP [dm3] 3L_13849703_SNP [dm6]	G	A	1.551e^-4	0.776	INTRON Hml
X	17323344	X_17323344_SNP [dm3] X_17429311_SNP [dm6]	A	G	1.554e^-4	0.776	DOWNSTREAM CG5613 INTRON CG12994
3L	5938145	3L_5938145_SNP [dm3] 3L_5945045_SNP [dm6]	T	A	1.554e^-4	0.776	INTRON CG33993
2L	8552694	2L_8552694_SNP [dm3] 2L_8552694_SNP [dm6]	T	A	1.555e^-4	0.776	INTRON Sema-1a
3L	6872717	3L_6872717_SNP [dm3] 3L_6879617_SNP [dm6]	A	G	1.556e^-4	0.776	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10929110	2L_10929110_SNP [dm3] 2L_10929110_SNP [dm6]	A	T	1.558e^-4	0.776	INTRON dpr2
2L	3487475	2L_3487475_SNP [dm3] 2L_3487475_SNP [dm6]	C	T	1.560e^-4	0.776	INTRON CG15414
X	4804602	X_4804602_SNP [dm3] X_4910569_SNP [dm6]	A	C	1.567e^-4	0.776	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18738740	3R_18738740_SNP [dm3] 3R_22913018_SNP [dm6]	G	T	1.569e^-4	0.776	INTRON klg
2L	12578209	2L_12578209_SNP [dm3] 2L_12578209_SNP [dm6]	C	A	1.578e^-4	0.776	INTERGENIC
2R	4608447	2R_4608447_SNP [dm3] 2R_8720942_SNP [dm6]	T	G	1.578e^-4	0.776	SYNONYMOUS_CODING CG30357 INTRON CG14767	TF binding site mE1_TFBS_HSA
3L	4626789	3L_4626789_DEL [dm3] 3L_4626789_DEL [dm6]	CCGA	C	1.580e^-4	0.776	UTR_5_PRIME Rpd3 UPSTREAM Src64B EXON CR45438	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15207780	2L_15207780_SNP [dm3] 2L_15207780_SNP [dm6]	C	T	1.590e^-4	0.776	UPSTREAM CR44196 INTERGENIC
3R	24730392	3R_24730392_SNP [dm3] 3R_28904670_SNP [dm6]	T	C	1.592e^-4	0.776	INTRON Doa
2R	12878031	2R_12878031_SNP [dm3] 2R_16990526_SNP [dm6]	G	A	1.596e^-4	0.776	INTRON Cbp53E
2R	18100207	2R_18100207_SNP [dm3] 2R_22212702_SNP [dm6]	C	T	1.596e^-4	0.776	UTR_3_PRIME CG11291 UPSTREAM ari-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24353138	3R_24353138_SNP [dm3] 3R_28527416_SNP [dm6]	C	A	1.598e^-4	0.776	SYNONYMOUS_CODING Ppn
2L	9154915	2L_9154915_SNP [dm3] 2L_9154915_SNP [dm6]	C	T	1.600e^-4	0.776	INTRON CG32982
3R	16981898	3R_16981898_SNP [dm3] 3R_21156176_SNP [dm6]	T	G	1.601e^-4	0.776	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16981607	3R_16981607_SNP [dm3] 3R_21155885_SNP [dm6]	C	A	1.602e^-4	0.776	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2R	6953355	2R_6953355_SNP [dm3] 2R_11065850_SNP [dm6]	C	T	1.612e^-4	0.777	INTRON luna
3R	16981915	3R_16981915_SNP [dm3] 3R_21156193_SNP [dm6]	A	T	1.612e^-4	0.777	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11938397	2L_11938397_SNP [dm3] 2L_11938397_SNP [dm6]	C	A	1.634e^-4	0.781	SYNONYMOUS_CODING Or33c DOWNSTREAM Or33b	TF binding site mE1_TFBS_cad
2R	6719708	2R_6719708_SNP [dm3] 2R_10832203_SNP [dm6]	T	C	1.643e^-4	0.781	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	6724482	2R_6724482_SNP [dm3] 2R_10836977_SNP [dm6]	G	T	1.643e^-4	0.781	UTR_3_PRIME CG7686 DOWNSTREAM CG7686	TF binding site mE1_TFBS_sens
2R	18090768	2R_18090768_SNP [dm3] 2R_22203263_SNP [dm6]	C	A	1.648e^-4	0.781	UPSTREAM Swim DOWNSTREAM CG3292 & 1 other INTERGENIC
X	12359704	X_12359704_INS [dm3] X_12465671_INS [dm6]	T	TGGTCAATATTTAATAGAAT...	1.650e^-4	0.781	INTRON CG42258
3R	17794302	3R_17794302_SNP [dm3] 3R_21968580_SNP [dm6]	C	T	1.652e^-4	0.781	INTRON Eip93F
2L	15996647	2L_15996647_SNP [dm3] 2L_15996647_SNP [dm6]	G	C	1.653e^-4	0.781	INTERGENIC
3L	8823904	3L_8823904_SNP [dm3] 3L_8830804_SNP [dm6]	C	T	1.666e^-4	0.781	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_sens
2R	2925219	2R_2925219_SNP [dm3] 2R_7037714_SNP [dm6]	C	T	1.669e^-4	0.781	UTR_5_PRIME CG33914 DOWNSTREAM Tsp42Ei
3R	20971574	3R_20971574_SNP [dm3] 3R_25145852_SNP [dm6]	C	A	1.671e^-4	0.781	INTERGENIC
3L	18022976	3L_18022976_SNP [dm3] 3L_18029876_SNP [dm6]	T	G	1.675e^-4	0.781	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12360151	X_12360151_SNP [dm3] X_12466118_SNP [dm6]	C	T	1.677e^-4	0.781	INTRON CG42258	TF binding site BDTNP1_TFBS_dl
2R	15161695	2R_15161695_INS [dm3] 2R_19274190_INS [dm6]	T	TTT	1.680e^-4	0.781	INTRON rib	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25507631	3R_25507631_INS [dm3] 3R_29681909_INS [dm6]	A	ACA	1.682e^-4	0.781	UTR_5_PRIME CG7582 UPSTREAM Gycalpha99B INTRON CG7582	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3078178	3R_3078178_SNP [dm3] 3R_7252456_SNP [dm6]	T	G	1.684e^-4	0.781	UTR_3_PRIME Gld UPSTREAM Obp84a DOWNSTREAM CG10050
3L	10678959	3L_10678959_SNP [dm3] 3L_10685859_SNP [dm6]	T	C	1.689e^-4	0.781	SYNONYMOUS_CODING simj	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21726351	3R_21726351_SNP [dm3] 3R_25900629_SNP [dm6]	C	A	1.691e^-4	0.781	NON_SYNONYMOUS_CODING CG31091 DOWNSTREAM MCO3
X	12359869	X_12359869_SNP [dm3] X_12465836_SNP [dm6]	G	C	1.709e^-4	0.782	INTRON CG42258
2R	15339515	2R_15339515_SNP [dm3] 2R_19452010_SNP [dm6]	C	A	1.717e^-4	0.782	UPSTREAM CG7744 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn
3L	19129766	3L_19129766_SNP [dm3] 3L_19136666_SNP [dm6]	T	C	1.723e^-4	0.782	UTR_5_PRIME CG14082
3L	13842828	3L_13842828_SNP [dm3] 3L_13849728_SNP [dm6]	C	A	1.730e^-4	0.782	INTRON Hml
3R	16981622	3R_16981622_DEL [dm3] 3R_21155900_DEL [dm6]	GGCG	G	1.736e^-4	0.782	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2R	13110273	2R_13110273_SNP [dm3] 2R_17222768_SNP [dm6]	A	G	1.738e^-4	0.782	INTRON mbl
2R	7253725	2R_7253725_DEL [dm3] 2R_11366220_DEL [dm6]	TGTACACAAATACATACCTA...	T	1.739e^-4	0.782	UPSTREAM CG13204 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7253773	2R_7253773_SNP [dm3] 2R_11366268_SNP [dm6]	C	G	1.739e^-4	0.782	UPSTREAM CG13204 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10798279	X_10798279_SNP [dm3] X_10904246_SNP [dm6]	T	A	1.743e^-4	0.782	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8181395	2L_8181395_INS [dm3] 2L_8181395_INS [dm6]	A	AA	1.743e^-4	0.782	UTR_3_PRIME Piezo INTRON Piezo
2R	2779093	2R_2779093_SNP [dm3] 2R_6891588_SNP [dm6]	A	G	1.752e^-4	0.782	UPSTREAM CG30158 INTERGENIC
3L	8075347	3L_8075347_SNP [dm3] 3L_8082247_SNP [dm6]	T	G	1.754e^-4	0.782	INTRON Ect4 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	16354482	3L_16354482_SNP [dm3] 3L_16361382_SNP [dm6]	T	A	1.759e^-4	0.782	INTRON CG45057
2R	2818465	2R_2818465_SNP [dm3] 2R_6930960_SNP [dm6]	C	T	1.765e^-4	0.782	INTRON mim
3R	22915611	3R_22915611_SNP [dm3] 3R_27089889_SNP [dm6]	C	A	1.767e^-4	0.782	UTR_3_PRIME Cpr97Eb
2R	8628104	2R_8628104_SNP [dm3] 2R_12740599_SNP [dm6]	T	G	1.769e^-4	0.782	INTRON CG42663	TF binding site mE1_TFBS_cad
3R	16981498	3R_16981498_SNP [dm3] 3R_21155776_SNP [dm6]	T	A	1.770e^-4	0.782	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18101348	2R_18101348_SNP [dm3] 2R_22213843_SNP [dm6]	G	A	1.770e^-4	0.782	INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	16827385	3R_16827385_SNP [dm3] 3R_21001663_SNP [dm6]	C	T	1.771e^-4	0.782	INTRON Calx
3L	5914607	3L_5914607_SNP [dm3] 3L_5921507_SNP [dm6]	A	T	1.780e^-4	0.782	UPSTREAM CG32407 & 1 other INTERGENIC
3R	22024769	3R_22024769_SNP [dm3] 3R_26199047_SNP [dm6]	T	C	1.785e^-4	0.782	INTRON CR44320
2R	12478669	2R_12478669_SNP [dm3] 2R_16591164_SNP [dm6]	G	A	1.792e^-4	0.782	SYNONYMOUS_CODING CG8306	TF binding site mE1_TFBS_sens
2L	18982673	2L_18982673_SNP [dm3] 2L_18982673_SNP [dm6]	A	T	1.796e^-4	0.782	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15677187	3L_15677187_SNP [dm3] 3L_15684087_SNP [dm6]	G	T	1.802e^-4	0.782	NON_SYNONYMOUS_CODING pgant8 UPSTREAM CG7579
3R	18859927	3R_18859927_SNP [dm3] 3R_23034205_SNP [dm6]	T	G	1.804e^-4	0.782	INTRON CG13833
X	11816801	X_11816801_SNP [dm3] X_11922768_SNP [dm6]	C	T	1.805e^-4	0.782	UPSTREAM Sclp INTRON Sclp
2L	17804317	2L_17804317_SNP [dm3] 2L_17804317_SNP [dm6]	A	T	1.807e^-4	0.782	INTRON CadN2
3R	24767210	3R_24767210_DEL [dm3] 3R_28941488_DEL [dm6]	TA	T	1.816e^-4	0.782	INTRON CG14521
3R	24767215	3R_24767215_INS [dm3] 3R_28941493_INS [dm6]	T	AATG	1.816e^-4	0.782	INTRON CG14521
3L	18017940	3L_18017940_SNP [dm3] 3L_18024840_SNP [dm6]	T	G	1.818e^-4	0.782	INTRON Eip75B
3R	18465211	3R_18465211_SNP [dm3] 3R_22639489_SNP [dm6]	A	T	1.832e^-4	0.786	UPSTREAM CG45058 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	22027566	3R_22027566_SNP [dm3] 3R_26201844_SNP [dm6]	G	C	1.847e^-4	0.786	INTRON CR44320
2L	18983890	2L_18983890_SNP [dm3] 2L_18983890_SNP [dm6]	T	A	1.859e^-4	0.786	INTRON Swip-1
X	4151951	X_4151951_DEL [dm3] X_4257918_DEL [dm6]	GT	G	1.861e^-4	0.786	INTERGENIC
2R	9356245	2R_9356245_SNP [dm3] 2R_13468740_SNP [dm6]	T	G	1.865e^-4	0.786	INTRON arr
3R	18281526	3R_18281526_SNP [dm3] 3R_22455804_SNP [dm6]	A	G	1.871e^-4	0.786	INTRON CG34376	TF binding site mE1_TFBS_inv
3R	16827318	3R_16827318_SNP [dm3] 3R_21001596_SNP [dm6]	T	A	1.873e^-4	0.786	INTRON Calx
3R	16981917	3R_16981917_SNP [dm3] 3R_21156195_SNP [dm6]	A	T	1.874e^-4	0.786	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15996648	2L_15996648_SNP [dm3] 2L_15996648_SNP [dm6]	G	T	1.880e^-4	0.786	INTERGENIC
2L	6037123	2L_6037123_SNP [dm3] 2L_6037123_SNP [dm6]	A	G	1.886e^-4	0.786	UTR_3_PRIME CG9117 UPSTREAM mtm & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	13708989	X_13708989_INS [dm3] X_13814956_INS [dm6]	T	TC	1.900e^-4	0.786	INTRON Clic	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_jumu
2R	18092541	2R_18092541_SNP [dm3] 2R_22205036_SNP [dm6]	T	C	1.909e^-4	0.786	DOWNSTREAM CG3290 INTRON CG3292
2R	15851277	2R_15851277_SNP [dm3] 2R_19963772_SNP [dm6]	G	A	1.913e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17478408	3R_17478408_SNP [dm3] 3R_21652686_SNP [dm6]	A	C	1.921e^-4	0.786	INTRON E2f	TF binding site BDTNP1_TFBS_dl
3L	5332968	3L_5332968_SNP [dm3] 3L_5339868_SNP [dm6]	A	T	1.923e^-4	0.786	INTERGENIC
X	3926935	X_3926935_DEL [dm3] X_4032902_DEL [dm6]	TGT	T	1.924e^-4	0.786	INTERGENIC
2R	2818317	2R_2818317_SNP [dm3] 2R_6930812_SNP [dm6]	A	G	1.928e^-4	0.786	INTRON mim
3R	22075192	3R_22075192_SNP [dm3] 3R_26249470_SNP [dm6]	C	T	1.932e^-4	0.786	INTRON CR42745	TF binding site mE1_TFBS_bab1
X	10860593	X_10860593_SNP [dm3] X_10966560_SNP [dm6]	T	C	1.946e^-4	0.786	SPLICE_SITE_REGION C901 INTRON C901
3L	11926584	3L_11926584_SNP [dm3] 3L_11933484_SNP [dm6]	C	A	1.953e^-4	0.786	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9417183	2R_9417183_SNP [dm3] 2R_13529678_SNP [dm6]	C	T	1.954e^-4	0.786	UTR_5_PRIME Vmat INTRON Vmat
2R	4941735	2R_4941735_SNP [dm3] 2R_9054230_SNP [dm6]	G	C	1.960e^-4	0.786	INTRON CG13743
2L	7836366	2L_7836366_SNP [dm3] 2L_7836366_SNP [dm6]	C	G	1.963e^-4	0.786	INTERGENIC
X	3166977	X_3166977_INS [dm3] X_3272944_INS [dm6]	C	CTTACAATCTCGCATCGAAT...	1.967e^-4	0.786	INTRON dnc
2R	18101547	2R_18101547_SNP [dm3] 2R_22214042_SNP [dm6]	G	A	1.970e^-4	0.786	INTRON ari-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18095710	2R_18095710_SNP [dm3] 2R_22208205_SNP [dm6]	A	T	1.977e^-4	0.786	UPSTREAM CG3290 DOWNSTREAM CG3264 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1432299	2L_1432299_SNP [dm3] 2L_1432299_SNP [dm6]	G	A	1.983e^-4	0.786	UPSTREAM snRNA:U3:22A INTERGENIC
2R	4827787	2R_4827787_SNP [dm3] 2R_8940282_SNP [dm6]	G	A	1.984e^-4	0.786	UPSTREAM CG13748 & 1 other INTERGENIC
2L	3743626	2L_3743626_SNP [dm3] 2L_3743626_SNP [dm6]	T	G	1.985e^-4	0.786	INTRON CG10019
X	12359687	X_12359687_SNP [dm3] X_12465654_SNP [dm6]	T	C	1.991e^-4	0.786	INTRON CG42258
2R	6728792	2R_6728792_SNP [dm3] 2R_10841287_SNP [dm6]	T	G	1.992e^-4	0.786	NON_SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11145878	3L_11145878_SNP [dm3] 3L_11152778_SNP [dm6]	G	C	1.998e^-4	0.786	INTRON CG32082
2R	18092535	2R_18092535_SNP [dm3] 2R_22205030_SNP [dm6]	C	G	2.003e^-4	0.786	DOWNSTREAM CG3290 INTRON CG3292
2L	6037153	2L_6037153_SNP [dm3] 2L_6037153_SNP [dm6]	T	A	2.003e^-4	0.786	NON_SYNONYMOUS_CODING CG9117 UPSTREAM mtm & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14982573	3L_14982573_SNP [dm3] 3L_14989473_SNP [dm6]	A	T	2.003e^-4	0.786	INTRON mnd	TF binding site BDTNP1_TFBS_da
2R	2963822	2R_2963822_SNP [dm3] 2R_7076317_SNP [dm6]	T	A	2.006e^-4	0.786	INTERGENIC
X	21353396	X_21353396_SNP [dm3] X_21482369_SNP [dm6]	T	C	2.011e^-4	0.786	DOWNSTREAM CR45511 INTERGENIC
3R	21790664	3R_21790664_SNP [dm3] 3R_25964942_SNP [dm6]	C	T	2.017e^-4	0.786	INTRON boss	TF binding site mE1_TFBS_inv
2R	10963852	2R_10963852_SNP [dm3] 2R_15076347_SNP [dm6]	A	C	2.021e^-4	0.786	INTERGENIC
X	9212129	X_9212129_SNP [dm3] X_9318096_SNP [dm6]	G	A	2.023e^-4	0.786	UTR_3_PRIME c12.1	TF binding site mE1_TFBS_cad
3L	8824967	3L_8824967_SNP [dm3] 3L_8831867_SNP [dm6]	T	C	2.024e^-4	0.786	INTRON dally	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	5398327	2R_5398327_SNP [dm3] 2R_9510822_SNP [dm6]	C	T	2.025e^-4	0.786	INTRON brp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10529479	2R_10529479_SNP [dm3] 2R_14641974_SNP [dm6]	T	A	2.028e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2907094	2R_2907094_SNP [dm3] 2R_7019589_SNP [dm6]	A	G	2.029e^-4	0.786	UPSTREAM CG43647 DOWNSTREAM CG43646 INTERGENIC
3R	22081511	3R_22081511_SNP [dm3] 3R_26255789_SNP [dm6]	A	G	2.037e^-4	0.786	DOWNSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_bcd
2L	20526196	2L_20526196_SNP [dm3] 2L_20526196_SNP [dm6]	A	G	2.038e^-4	0.786	INTERGENIC
2R	18079128	2R_18079128_SNP [dm3] 2R_22191623_SNP [dm6]	A	G	2.041e^-4	0.786	INTRON Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6724464	2R_6724464_SNP [dm3] 2R_10836959_SNP [dm6]	C	G	2.041e^-4	0.786	UTR_3_PRIME CG7686 DOWNSTREAM CG7686	TF binding site mE1_TFBS_sens
2R	18101246	2R_18101246_SNP [dm3] 2R_22213741_SNP [dm6]	A	G	2.042e^-4	0.786	INTRON ari-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	16827333	3R_16827333_SNP [dm3] 3R_21001611_SNP [dm6]	T	A	2.056e^-4	0.786	INTRON Calx
3L	7437614	3L_7437614_SNP [dm3] 3L_7444514_SNP [dm6]	G	A	2.065e^-4	0.786	INTRON CG42458
3R	18859928	3R_18859928_SNP [dm3] 3R_23034206_SNP [dm6]	A	T	2.066e^-4	0.786	INTRON CG13833
3R	18279454	3R_18279454_SNP [dm3] 3R_22453732_SNP [dm6]	T	A	2.068e^-4	0.786	INTRON CG34376	TF binding site mE1_TFBS_cad
2R	18085560	2R_18085560_SNP [dm3] 2R_22198055_SNP [dm6]	C	G	2.069e^-4	0.786	UPSTREAM snoRNA:Or-CD1 INTRON Swim
2L	2834989	2L_2834989_SNP [dm3] 2L_2834989_SNP [dm6]	G	A	2.076e^-4	0.786	NON_SYNONYMOUS_CODING CG3119
3R	10703326	3R_10703326_SNP [dm3] 3R_14877604_SNP [dm6]	A	G	2.076e^-4	0.786	INTERGENIC
2L	7837352	2L_7837352_SNP [dm3] 2L_7837352_SNP [dm6]	T	C	2.081e^-4	0.786	INTERGENIC
2R	18079221	2R_18079221_SNP [dm3] 2R_22191716_SNP [dm6]	G	T	2.082e^-4	0.786	SYNONYMOUS_CODING Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5937557	3L_5937557_SNP [dm3] 3L_5944457_SNP [dm6]	T	G	2.082e^-4	0.786	INTRON CG33993
3L	5938979	3L_5938979_SNP [dm3] 3L_5945879_SNP [dm6]	C	T	2.082e^-4	0.786	INTRON CG33993	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1978809	3L_1978809_SNP [dm3] 3L_1978809_SNP [dm6]	G	C	2.086e^-4	0.786	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18913509	2L_18913509_SNP [dm3] 2L_18913509_SNP [dm6]	T	C	2.086e^-4	0.786	INTERGENIC
2R	2925524	2R_2925524_SNP [dm3] 2R_7038019_SNP [dm6]	T	C	2.098e^-4	0.789	UTR_5_PRIME CG33914 UPSTREAM CG33914
2L	4436499	2L_4436499_SNP [dm3] 2L_4436499_SNP [dm6]	C	T	2.111e^-4	0.789	INTRON CG15431
2L	2944522	2L_2944522_SNP [dm3] 2L_2944522_SNP [dm6]	A	T	2.111e^-4	0.789	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	20515697	2R_20515697_SNP [dm3] 2R_24628174_SNP [dm6]	T	C	2.114e^-4	0.789	DOWNSTREAM snoRNA:Me18S-G393 INTRON CG13594
3R	4567558	3R_4567558_SNP [dm3] 3R_8741836_SNP [dm6]	T	A	2.119e^-4	0.789	INTRON CG9801
X	16817264	X_16817264_SNP [dm3] X_16923231_SNP [dm6]	C	G	2.119e^-4	0.789	INTRON CG4928
X	15637964	X_15637964_SNP [dm3] X_15743931_SNP [dm6]	A	G	2.131e^-4	0.79	SYNONYMOUS_CODING CG8944	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	951949	X_951949_SNP [dm3] X_1057916_SNP [dm6]	T	A	2.131e^-4	0.79	INTRON CR44779
2L	16458004	2L_16458004_INS [dm3] 2L_16458004_INS [dm6]	A	GT	2.146e^-4	0.794	INTERGENIC	regulatory region REDfly_CRMs
2L	5896588	2L_5896588_SNP [dm3] 2L_5896588_SNP [dm6]	G	A	2.163e^-4	0.794	INTERGENIC
X	18712018	X_18712018_SNP [dm3] X_18817985_SNP [dm6]	T	G	2.164e^-4	0.794	INTRON CG42450
2R	18845381	2R_18845381_SNP [dm3] 2R_22957858_SNP [dm6]	A	G	2.172e^-4	0.794	UPSTREAM CR44780 INTERGENIC
3L	8070341	3L_8070341_SNP [dm3] 3L_8077241_SNP [dm6]	A	T	2.180e^-4	0.794	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl
3R	25244494	3R_25244494_SNP [dm3] 3R_29418772_SNP [dm6]	C	T	2.192e^-4	0.794	INTRON Ptp99A
2R	2796387	2R_2796387_SNP [dm3] 2R_6908882_SNP [dm6]	C	A	2.195e^-4	0.794	INTRON CG30158
3R	17794318	3R_17794318_SNP [dm3] 3R_21968596_SNP [dm6]	G	T	2.197e^-4	0.794	INTRON Eip93F
3L	13845469	3L_13845469_SNP [dm3] 3L_13852369_SNP [dm6]	C	T	2.198e^-4	0.794	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17307216	3R_17307216_SNP [dm3] 3R_21481494_SNP [dm6]	G	T	2.202e^-4	0.794	UPSTREAM CG7922 INTERGENIC
3R	4568793	3R_4568793_SNP [dm3] 3R_8743071_SNP [dm6]	G	A	2.205e^-4	0.794	INTRON CG9801
3R	24286845	3R_24286845_SNP [dm3] 3R_28461123_SNP [dm6]	G	A	2.207e^-4	0.794	INTRON beat-VI	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6758904	2L_6758904_SNP [dm3] 2L_6758904_SNP [dm6]	T	A	2.209e^-4	0.794	SYNONYMOUS_CODING CG11322 DOWNSTREAM CG11321	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16981516	3R_16981516_SNP [dm3] 3R_21155794_SNP [dm6]	T	G	2.212e^-4	0.794	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3659308	3L_3659308_SNP [dm3] 3L_3659308_SNP [dm6]	A	T	2.212e^-4	0.794	SYNONYMOUS_CODING CG43098
X	15807890	X_15807890_SNP [dm3] X_15913857_SNP [dm6]	C	T	2.218e^-4	0.794	SYNONYMOUS_CODING CG8909
X	5548721	X_5548721_SNP [dm3] X_5654688_SNP [dm6]	G	A	2.219e^-4	0.794	SYNONYMOUS_CODING CG42265	TF binding site mE1_TFBS_chinmo
2L	13250453	2L_13250453_SNP [dm3] 2L_13250453_SNP [dm6]	C	T	2.222e^-4	0.794	DOWNSTREAM CG16820 INTERGENIC
3R	16614911	3R_16614911_SNP [dm3] 3R_20789189_SNP [dm6]	G	T	2.231e^-4	0.794	UPSTREAM Syp INTRON Syp
2R	14782521	2R_14782521_SNP [dm3] 2R_18895016_SNP [dm6]	G	A	2.237e^-4	0.794	INTRON sano
3L	14907390	3L_14907390_SNP [dm3] 3L_14914290_SNP [dm6]	C	T	2.237e^-4	0.794	INTRON DCX-EMAP
3L	10580604	3L_10580604_SNP [dm3] 3L_10587504_SNP [dm6]	G	A	2.239e^-4	0.794	INTRON A2bp1	TF binding site mE1_TFBS_inv
2R	2923685	2R_2923685_SNP [dm3] 2R_7036180_SNP [dm6]	A	G	2.246e^-4	0.794	SYNONYMOUS_CODING Tsp42Ei DOWNSTREAM CG33914
2R	11790116	2R_11790116_INS [dm3] 2R_15902611_INS [dm6]	A	ACA	2.249e^-4	0.794	INTRON sli	TF binding site BDTNP1_TFBS_twi
3L	5343307	3L_5343307_SNP [dm3] 3L_5350207_SNP [dm6]	T	C	2.258e^-4	0.794	INTRON lama
3R	22080046	3R_22080046_SNP [dm3] 3R_26254324_SNP [dm6]	A	C	2.259e^-4	0.794	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk mE1_TFBS_zfh1
3R	14076611	3R_14076611_SNP [dm3] 3R_18250889_SNP [dm6]	G	A	2.261e^-4	0.794	UPSTREAM CG18598 DOWNSTREAM 14-3-3epsilon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5347079	3L_5347079_INS [dm3] 3L_5353979_INS [dm6]	A	AATAA	2.264e^-4	0.794	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	7777287	X_7777287_SNP [dm3] X_7883254_SNP [dm6]	T	C	2.281e^-4	0.794	SYNONYMOUS_CODING Ir7f	TF binding site mE1_TFBS_chinmo
3R	19703090	3R_19703090_SNP [dm3] 3R_23877368_SNP [dm6]	A	C	2.287e^-4	0.794	INTRON Pli
3L	801001	3L_801001_SNP [dm3] 3L_801001_SNP [dm6]	A	C	2.290e^-4	0.794	INTERGENIC
2L	6770049	2L_6770049_SNP [dm3] 2L_6770049_SNP [dm6]	T	C	2.298e^-4	0.794	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16686228	3R_16686228_SNP [dm3] 3R_20860506_SNP [dm6]	T	A	2.300e^-4	0.794	UTR_3_PRIME CG3822 UPSTREAM Ir93a
2L	17517707	2L_17517707_SNP [dm3] 2L_17517707_SNP [dm6]	C	T	2.305e^-4	0.794	INTRON Dhc36C	TF binding site mE1_TFBS_cad
X	16293854	X_16293854_SNP [dm3] X_16399821_SNP [dm6]	T	C	2.306e^-4	0.794	UTR_3_PRIME mei-41 & 1 other
2L	1433340	2L_1433340_SNP [dm3] 2L_1433340_SNP [dm6]	A	G	2.308e^-4	0.794	DOWNSTREAM snRNA:U3:22A INTERGENIC
2L	13247273	2L_13247273_SNP [dm3] 2L_13247273_SNP [dm6]	T	C	2.309e^-4	0.794	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20974169	3R_20974169_SNP [dm3] 3R_25148447_SNP [dm6]	C	T	2.313e^-4	0.794	INTERGENIC
2R	18067506	2R_18067506_SNP [dm3] 2R_22180001_SNP [dm6]	T	C	2.316e^-4	0.794	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21887829	3R_21887829_SNP [dm3] 3R_26062107_SNP [dm6]	T	C	2.319e^-4	0.794	SYNONYMOUS_CODING CG14551 DOWNSTREAM CG14544
2R	6719803	2R_6719803_SNP [dm3] 2R_10832298_SNP [dm6]	T	G	2.320e^-4	0.794	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	18085567	2R_18085567_SNP [dm3] 2R_22198062_SNP [dm6]	A	T	2.321e^-4	0.794	UPSTREAM snoRNA:Or-CD1 INTRON Swim
2R	18549365	2R_18549365_SNP [dm3] 2R_22661860_SNP [dm6]	G	A	2.325e^-4	0.794	UPSTREAM CG42566 DOWNSTREAM CG42565 & 2 others INTERGENIC
3R	22538319	3R_22538319_SNP [dm3] 3R_26712597_SNP [dm6]	C	T	2.333e^-4	0.794	INTRON amon	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2834639	2L_2834639_SNP [dm3] 2L_2834639_SNP [dm6]	C	A	2.334e^-4	0.794	DOWNSTREAM CG3119 INTERGENIC
2L	3695399	2L_3695399_SNP [dm3] 2L_3695399_SNP [dm6]	C	T	2.353e^-4	0.799	UTR_5_PRIME CG16713 UPSTREAM CR43364 & 1 other DOWNSTREAM CG16712
2L	11861817	2L_11861817_SNP [dm3] 2L_11861817_SNP [dm6]	A	G	2.357e^-4	0.799	INTRON Pde1c
3L	15397533	3L_15397533_SNP [dm3] 3L_15404433_SNP [dm6]	G	A	2.369e^-4	0.8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7873515	3L_7873515_SNP [dm3] 3L_7880415_SNP [dm6]	G	T	2.377e^-4	0.8	INTRON CG32365
X	4562997	X_4562997_SNP [dm3] X_4668964_SNP [dm6]	C	T	2.378e^-4	0.8	SYNONYMOUS_CODING rap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7836389	2L_7836389_SNP [dm3] 2L_7836389_SNP [dm6]	G	A	2.381e^-4	0.8	INTERGENIC
3R	25321967	3R_25321967_SNP [dm3] 3R_29496245_SNP [dm6]	A	T	2.384e^-4	0.8	UPSTREAM CG2010 INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17121051	2R_17121051_SNP [dm3] 2R_21233546_SNP [dm6]	G	C	2.387e^-4	0.8	INTRON ASPP
X	12359252	X_12359252_SNP [dm3] X_12465219_SNP [dm6]	T	G	2.389e^-4	0.8	INTRON CG42258
3R	10531371	3R_10531371_SNP [dm3] 3R_14705649_SNP [dm6]	A	C	2.408e^-4	0.803	INTRON kibra
X	12621622	X_12621622_SNP [dm3] X_12727589_SNP [dm6]	T	A	2.409e^-4	0.803	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25284553	3R_25284553_SNP [dm3] 3R_29458831_SNP [dm6]	C	G	2.412e^-4	0.803	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	8445797	2L_8445797_SNP [dm3] 2L_8445797_SNP [dm6]	T	A	2.413e^-4	0.803	UTR_3_PRIME CG31897 DOWNSTREAM U26
2R	18110371	2R_18110371_SNP [dm3] 2R_22222866_SNP [dm6]	C	T	2.432e^-4	0.805	NON_SYNONYMOUS_CODING Oatp58Db DOWNSTREAM Oatp58Dc	TF binding site mE1_TFBS_sens
3R	17307224	3R_17307224_SNP [dm3] 3R_21481502_SNP [dm6]	A	G	2.433e^-4	0.805	UPSTREAM CG7922 INTERGENIC
2R	15950935	2R_15950935_SNP [dm3] 2R_20063430_SNP [dm6]	A	G	2.435e^-4	0.805	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	7575515	2L_7575515_SNP [dm3] 2L_7575515_SNP [dm6]	G	A	2.450e^-4	0.809	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
2L	5287521	2L_5287521_SNP [dm3] 2L_5287521_SNP [dm6]	T	C	2.462e^-4	0.81	UPSTREAM CR44742 DOWNSTREAM CR44743 EXON CR44743
3R	3078170	3R_3078170_DEL [dm3] 3R_7252448_DEL [dm6]	ATACCTA	A	2.466e^-4	0.81	UTR_3_PRIME Gld UPSTREAM Obp84a DOWNSTREAM CG10050
3L	19162030	3L_19162030_SNP [dm3] 3L_19168930_SNP [dm6]	A	G	2.471e^-4	0.81	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6697608	2R_6697608_SNP [dm3] 2R_10810103_SNP [dm6]	A	C	2.473e^-4	0.81	NON_SYNONYMOUS_CODING CG12935 UPSTREAM mms4 DOWNSTREAM CG7637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	801023	3L_801023_SNP [dm3] 3L_801023_SNP [dm6]	A	T	2.480e^-4	0.81	INTERGENIC
2L	7378679	2L_7378679_SNP [dm3] 2L_7378679_SNP [dm6]	T	C	2.494e^-4	0.81	SYNONYMOUS_CODING ninaC
3R	14031372	3R_14031372_SNP [dm3] 3R_18205650_SNP [dm6]	T	C	2.497e^-4	0.81	INTRON CG7985
3R	20971564	3R_20971564_SNP [dm3] 3R_25145842_SNP [dm6]	T	A	2.504e^-4	0.81	INTERGENIC
3L	11568592	3L_11568592_SNP [dm3] 3L_11575492_SNP [dm6]	C	T	2.505e^-4	0.81	SYNONYMOUS_CODING CG33489 UPSTREAM CG33490	TF binding site mE1_TFBS_cad
2L	9798757	2L_9798757_SNP [dm3] 2L_9798757_SNP [dm6]	A	G	2.508e^-4	0.81	INTRON nAChRalpha6
2L	8737674	2L_8737674_SNP [dm3] 2L_8737674_SNP [dm6]	C	T	2.521e^-4	0.81	INTRON raw
3L	4480068	3L_4480068_SNP [dm3] 3L_4480068_SNP [dm6]	G	A	2.522e^-4	0.81	UPSTREAM CG7465 INTERGENIC
3L	5129491	3L_5129491_DEL [dm3] 3L_5136391_DEL [dm6]	TA	T	2.526e^-4	0.81	UTR_5_PRIME CG4611 UPSTREAM CG10674 DOWNSTREAM CG4603 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11195754	X_11195754_SNP [dm3] X_11301721_SNP [dm6]	A	G	2.537e^-4	0.81	INTRON CG44422
3L	11019038	3L_11019038_SNP [dm3] 3L_11025938_SNP [dm6]	T	A	2.549e^-4	0.81	NON_SYNONYMOUS_CODING CG32079	TF binding site mE1_TFBS_HSA
3L	11593606	3L_11593606_SNP [dm3] 3L_11600506_SNP [dm6]	A	C	2.550e^-4	0.81	UPSTREAM CG14137 & 1 other INTRON CG7368
3L	18025885	3L_18025885_SNP [dm3] 3L_18032785_SNP [dm6]	A	C	2.550e^-4	0.81	INTRON Eip75B
3R	21230059	3R_21230059_SNP [dm3] 3R_25404337_SNP [dm6]	C	T	2.552e^-4	0.81	INTRON Fur1
2R	6729845	2R_6729845_SNP [dm3] 2R_10842340_SNP [dm6]	G	A	2.557e^-4	0.81	NON_SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	3248845	3L_3248845_SNP [dm3] 3L_3248845_SNP [dm6]	T	C	2.561e^-4	0.81	UTR_3_PRIME CG43389 UPSTREAM CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8252802	3L_8252802_SNP [dm3] 3L_8259702_SNP [dm6]	G	A	2.566e^-4	0.81	INTRON Dscam4
X	17323364	X_17323364_SNP [dm3] X_17429331_SNP [dm6]	C	G	2.566e^-4	0.81	DOWNSTREAM CG5613 INTRON CG12994
X	12359700	X_12359700_INS [dm3] X_12465667_INS [dm6]	T	TAAAT	2.566e^-4	0.81	INTRON CG42258
3L	13842316	3L_13842316_SNP [dm3] 3L_13849216_SNP [dm6]	C	G	2.568e^-4	0.81	SYNONYMOUS_CODING Hml
3R	17780717	3R_17780717_SNP [dm3] 3R_21954995_SNP [dm6]	A	T	2.569e^-4	0.81	INTRON Eip93F
3L	19122631	3L_19122631_SNP [dm3] 3L_19129531_SNP [dm6]	A	T	2.574e^-4	0.81	SYNONYMOUS_CODING Spn75F INTRON CG14082
3R	16827421	3R_16827421_SNP [dm3] 3R_21001699_SNP [dm6]	G	T	2.583e^-4	0.81	INTRON Calx
3L	15677525	3L_15677525_SNP [dm3] 3L_15684425_SNP [dm6]	T	A	2.587e^-4	0.81	UPSTREAM CG7579 INTRON pgant8
2L	21859180	2L_21859180_SNP [dm3] 2L_21859180_SNP [dm6]	A	G	2.596e^-4	0.81	INTRON CR44917	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	2145004	X_2145004_SNP [dm3] X_2250971_SNP [dm6]	A	G	2.601e^-4	0.81	UPSTREAM crn INTRON CG3191	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	6212800	3L_6212800_SNP [dm3] 3L_6219700_SNP [dm6]	C	T	2.604e^-4	0.81	UPSTREAM pncr008:3L INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18588220	3R_18588220_SNP [dm3] 3R_22762498_SNP [dm6]	T	A	2.605e^-4	0.81	SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
2L	3040546	2L_3040546_SNP [dm3] 2L_3040546_SNP [dm6]	G	A	2.607e^-4	0.81	NON_SYNONYMOUS_CODING CG17221 UPSTREAM cnir	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	16683508	2R_16683508_DEL [dm3] 2R_20796003_DEL [dm6]	AAACAATTTATGGATACA...	A	2.612e^-4	0.81	INTERGENIC
3R	23307873	3R_23307873_DEL [dm3] 3R_27482151_DEL [dm6]	AGTA	A	2.613e^-4	0.81	UTR_3_PRIME Cyp6a18
3R	18465154	3R_18465154_SNP [dm3] 3R_22639432_SNP [dm6]	A	G	2.617e^-4	0.81	UPSTREAM CG45058 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	19158207	3L_19158207_SNP [dm3] 3L_19165107_SNP [dm6]	C	G	2.618e^-4	0.81	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	24122279	3R_24122279_INS [dm3] 3R_28296557_INS [dm6]	A	AGA	2.622e^-4	0.81	INTERGENIC
X	12359703	X_12359703_SNP [dm3] X_12465670_SNP [dm6]	C	A	2.632e^-4	0.81	INTRON CG42258
X	5497662	X_5497662_SNP [dm3] X_5603629_SNP [dm6]	C	A	2.633e^-4	0.81	INTRON Vsx1
2L	8642393	2L_8642393_SNP [dm3] 2L_8642393_SNP [dm6]	T	G	2.635e^-4	0.81	INTRON Sema-1a
3L	16211901	3L_16211901_SNP [dm3] 3L_16218801_SNP [dm6]	C	T	2.636e^-4	0.81	INTERGENIC
X	15406665	X_15406665_SNP [dm3] X_15512632_SNP [dm6]	T	C	2.644e^-4	0.81	UTR_3_PRIME Ac13E
X	14792764	X_14792764_SNP [dm3] X_14898731_SNP [dm6]	A	G	2.644e^-4	0.81	INTRON Flo2
3L	7089853	3L_7089853_SNP [dm3] 3L_7096753_SNP [dm6]	T	A	2.659e^-4	0.812	INTRON form3
3R	3158660	3R_3158660_SNP [dm3] 3R_7332938_SNP [dm6]	T	C	2.659e^-4	0.812	DOWNSTREAM CR44337 INTERGENIC
3R	18465147	3R_18465147_SNP [dm3] 3R_22639425_SNP [dm6]	C	A	2.665e^-4	0.812	UPSTREAM CG45058 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	18084929	2R_18084929_SNP [dm3] 2R_22197424_SNP [dm6]	T	C	2.673e^-4	0.812	UPSTREAM snoRNA:Or-CD1 INTRON Swim	TF binding site BDTNP1_TFBS_dl
2L	19908887	2L_19908887_SNP [dm3] 2L_19908887_SNP [dm6]	A	T	2.674e^-4	0.812	INTRON sick	TF binding site mE1_TFBS_chinmo
2R	11796133	2R_11796133_SNP [dm3] 2R_15908628_SNP [dm6]	T	C	2.676e^-4	0.812	INTRON sli	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17392218	X_17392218_DEL [dm3] X_17498185_DEL [dm6]	ATA	A	2.684e^-4	0.813	DOWNSTREAM CR44692 INTRON CG43658	TF binding site mE1_TFBS_chinmo
2L	9772200	2L_9772200_SNP [dm3] 2L_9772200_SNP [dm6]	T	C	2.695e^-4	0.814	DOWNSTREAM ppk11 INTRON ppk16	TF binding site mE1_TFBS_sens
2R	7270233	2R_7270233_SNP [dm3] 2R_11382728_SNP [dm6]	A	G	2.700e^-4	0.814	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	18090036	2R_18090036_SNP [dm3] 2R_22202531_SNP [dm6]	T	G	2.703e^-4	0.814	UTR_5_PRIME Swim EXON CR45376
2R	9264639	2R_9264639_SNP [dm3] 2R_13377134_SNP [dm6]	T	C	2.708e^-4	0.814	SYNONYMOUS_CODING CG10814	TF binding site mE1_TFBS_chinmo
3L	2131631	3L_2131631_SNP [dm3] 3L_2131631_SNP [dm6]	C	T	2.708e^-4	0.814	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12205747	2L_12205747_SNP [dm3] 2L_12205747_SNP [dm6]	A	T	2.719e^-4	0.815	UPSTREAM aret INTRON aret
3L	4492666	3L_4492666_SNP [dm3] 3L_4492666_SNP [dm6]	A	T	2.721e^-4	0.815	INTERGENIC
3L	6897470	3L_6897470_SNP [dm3] 3L_6904370_SNP [dm6]	T	C	2.740e^-4	0.82	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13178594	2R_13178594_SNP [dm3] 2R_17291089_SNP [dm6]	A	G	2.746e^-4	0.82	INTRON mbl
3L	16645316	3L_16645316_SNP [dm3] 3L_16652216_SNP [dm6]	G	A	2.756e^-4	0.82	INTRON Baldspot
3R	21334758	3R_21334758_SNP [dm3] 3R_25509036_SNP [dm6]	A	G	2.761e^-4	0.82	DOWNSTREAM CG5111 INTERGENIC
3L	10711988	3L_10711988_SNP [dm3] 3L_10718888_SNP [dm6]	A	T	2.762e^-4	0.82	INTERGENIC
2R	18089781	2R_18089781_SNP [dm3] 2R_22202276_SNP [dm6]	G	A	2.770e^-4	0.82	INTRON Swim EXON CR45376
X	20043383	X_20043383_SNP [dm3] X_20149350_SNP [dm6]	A	G	2.775e^-4	0.82	INTRON CG9572
3L	12072385	3L_12072385_SNP [dm3] 3L_12079285_SNP [dm6]	T	C	2.777e^-4	0.82	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5329054	3L_5329054_SNP [dm3] 3L_5335954_SNP [dm6]	T	A	2.777e^-4	0.82	DOWNSTREAM CR45742 INTERGENIC
3R	16981243	3R_16981243_SNP [dm3] 3R_21155521_SNP [dm6]	A	G	2.781e^-4	0.82	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
2L	8327673	2L_8327673_SNP [dm3] 2L_8327673_SNP [dm6]	T	A	2.784e^-4	0.82	INTRON CG14275
3L	7163818	3L_7163818_INS [dm3] 3L_7170718_INS [dm6]	C	CCTCC	2.791e^-4	0.821	DOWNSTREAM Dscam2 INTRON Dscam2
3L	16645450	3L_16645450_SNP [dm3] 3L_16652350_SNP [dm6]	G	A	2.802e^-4	0.821	INTRON Baldspot	TF binding site mE1_TFBS_sens
3R	13767139	3R_13767139_INS [dm3] 3R_17941417_INS [dm6]	T	TTGGCCGT	2.803e^-4	0.821	INTRON cpo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22262328	3R_22262328_DEL [dm3] 3R_26436606_DEL [dm6]	CC	C	2.815e^-4	0.821	INTERGENIC
3R	3233443	3R_3233443_SNP [dm3] 3R_7407721_SNP [dm6]	C	A	2.817e^-4	0.821	INTRON Ir84a
X	13934101	X_13934101_SNP [dm3] X_14040068_SNP [dm6]	C	T	2.824e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2356107	3L_2356107_DEL [dm3] 3L_2356107_DEL [dm6]	GCTAG	G	2.827e^-4	0.821	INTERGENIC
2L	3327797	2L_3327797_SNP [dm3] 2L_3327797_SNP [dm6]	C	T	2.833e^-4	0.821	UPSTREAM CG33282 INTERGENIC
X	5411489	X_5411489_SNP [dm3] X_5517456_SNP [dm6]	A	G	2.838e^-4	0.821	SYNONYMOUS_CODING CG12730 EXON CR45518	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	6237972	3R_6237972_INS [dm3] 3R_10412250_INS [dm6]	T	TG	2.841e^-4	0.821	INTRON Irp-1B
2R	2851899	2R_2851899_SNP [dm3] 2R_6964394_SNP [dm6]	T	C	2.850e^-4	0.821	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2R	5379593	2R_5379593_DEL [dm3] 2R_9492088_DEL [dm6]	AATAAATTAA	A	2.851e^-4	0.821	INTERGENIC
2R	18335984	2R_18335984_SNP [dm3] 2R_22448479_SNP [dm6]	T	C	2.856e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8075421	3L_8075421_SNP [dm3] 3L_8082321_SNP [dm6]	T	C	2.858e^-4	0.821	INTRON Ect4 & 1 other	TF binding site mE1_TFBS_HSA
2R	18090043	2R_18090043_SNP [dm3] 2R_22202538_SNP [dm6]	T	C	2.860e^-4	0.821	UTR_5_PRIME Swim EXON CR45376
2L	21933627	2L_21933627_SNP [dm3] 2L_21933627_SNP [dm6]	T	A	2.860e^-4	0.821	INTERGENIC
X	12359699	X_12359699_SNP [dm3] X_12465666_SNP [dm6]	T	C	2.861e^-4	0.821	INTRON CG42258
2R	18091233	2R_18091233_SNP [dm3] 2R_22203728_SNP [dm6]	A	T	2.866e^-4	0.821	UTR_3_PRIME CG3292 DOWNSTREAM CR45376
2R	17718030	2R_17718030_SNP [dm3] 2R_21830525_SNP [dm6]	A	T	2.882e^-4	0.821	INTRON CG13492
2L	8181148	2L_8181148_SNP [dm3] 2L_8181148_SNP [dm6]	C	T	2.883e^-4	0.821	SYNONYMOUS_CODING Piezo INTRON Piezo
2R	12363980	2R_12363980_SNP [dm3] 2R_16476475_SNP [dm6]	T	C	2.892e^-4	0.821	INTERGENIC
2L	11209254	2L_11209254_SNP [dm3] 2L_11209254_SNP [dm6]	A	C	2.893e^-4	0.821	INTERGENIC	silencer mE1_HDAC_PRE
2R	10417490	2R_10417490_SNP [dm3] 2R_14529985_SNP [dm6]	A	G	2.903e^-4	0.821	INTRON ttv
3R	21726391	3R_21726391_SNP [dm3] 3R_25900669_SNP [dm6]	T	C	2.904e^-4	0.821	NON_SYNONYMOUS_CODING CG31091 DOWNSTREAM MCO3
2R	14545524	2R_14545524_SNP [dm3] 2R_18658019_SNP [dm6]	T	G	2.906e^-4	0.821	DOWNSTREAM Gint3 & 1 other INTRON SP2637
2R	14545527	2R_14545527_SNP [dm3] 2R_18658022_SNP [dm6]	C	A	2.906e^-4	0.821	DOWNSTREAM Gint3 & 1 other INTRON SP2637
3R	16827341	3R_16827341_SNP [dm3] 3R_21001619_SNP [dm6]	A	C	2.907e^-4	0.821	INTRON Calx
3L	11251583	3L_11251583_SNP [dm3] 3L_11258483_SNP [dm6]	G	T	2.918e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21164600	X_21164600_SNP [dm3] X_21293573_SNP [dm6]	C	G	2.923e^-4	0.822	INTRON CG1718
3R	11134596	3R_11134596_SNP [dm3] 3R_15308874_SNP [dm6]	A	T	2.927e^-4	0.822	DOWNSTREAM Tm1 INTERGENIC
2R	6732262	2R_6732262_SNP [dm3] 2R_10844757_SNP [dm6]	T	A	2.933e^-4	0.822	UPSTREAM CG30015 INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19241042	X_19241042_SNP [dm3] X_19347009_SNP [dm6]	C	T	2.933e^-4	0.822	INTRON nAChRalpha7
2L	16870636	2L_16870636_SNP [dm3] 2L_16870636_SNP [dm6]	T	A	2.948e^-4	0.825	EXON CR31781
X	20845018	X_20845018_SNP [dm3] X_20973991_SNP [dm6]	T	C	2.975e^-4	0.832	INTERGENIC
3L	15151346	3L_15151346_SNP [dm3] 3L_15158246_SNP [dm6]	G	A	2.982e^-4	0.832	NON_SYNONYMOUS_CODING Msh6 UPSTREAM Prp31	TF binding site mE1_TFBS_run
2R	16421515	2R_16421515_SNP [dm3] 2R_20534010_SNP [dm6]	C	T	2.992e^-4	0.832	UPSTREAM CG18067 DOWNSTREAM CG30154 INTERGENIC
X	2135171	X_2135171_SNP [dm3] X_2241138_SNP [dm6]	T	G	2.993e^-4	0.832	SYNONYMOUS_CODING kz UPSTREAM fs_1_K10	TF binding site mE1_TFBS_sens
3L	7874808	3L_7874808_SNP [dm3] 3L_7881708_SNP [dm6]	G	C	3.000e^-4	0.832	INTRON CG32365
3L	13843511	3L_13843511_SNP [dm3] 3L_13850411_SNP [dm6]	T	G	3.003e^-4	0.832	SYNONYMOUS_CODING Hml
3L	8075378	3L_8075378_SNP [dm3] 3L_8082278_SNP [dm6]	A	C	3.003e^-4	0.832	INTRON Ect4 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1689054	2L_1689054_SNP [dm3] 2L_1689054_SNP [dm6]	A	G	3.020e^-4	0.834	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2922957	2R_2922957_SNP [dm3] 2R_7035452_SNP [dm6]	T	G	3.027e^-4	0.834	DOWNSTREAM Tsp42Eh INTRON Tsp42Ei
2L	3389337	2L_3389337_SNP [dm3] 2L_3389337_SNP [dm6]	A	T	3.027e^-4	0.834	UPSTREAM CR44791 & 1 other INTERGENIC
2L	3389339	2L_3389339_SNP [dm3] 2L_3389339_SNP [dm6]	T	A	3.027e^-4	0.834	UPSTREAM CR44791 & 1 other INTERGENIC
3L	8842422	3L_8842422_SNP [dm3] 3L_8849322_SNP [dm6]	G	C	3.032e^-4	0.834	INTRON dally
3R	11094128	3R_11094128_SNP [dm3] 3R_15268406_SNP [dm6]	A	T	3.036e^-4	0.834	UTR_5_PRIME CG14864 UPSTREAM Zip88E INTRON CG14864	TF binding site BDTNP1_TFBS_dl
3R	26759818	3R_26759818_SNP [dm3] 3R_30934096_SNP [dm6]	C	T	3.042e^-4	0.834	INTERGENIC
2R	4651963	2R_4651963_SNP [dm3] 2R_8764458_SNP [dm6]	T	C	3.044e^-4	0.834	INTERGENIC
2L	9093884	2L_9093884_SNP [dm3] 2L_9093884_SNP [dm6]	T	C	3.051e^-4	0.834	INTERGENIC
2L	17797194	2L_17797194_SNP [dm3] 2L_17797194_SNP [dm6]	T	A	3.066e^-4	0.834	INTRON CadN2
2R	7897858	2R_7897858_SNP [dm3] 2R_12010353_SNP [dm6]	C	A	3.069e^-4	0.834	INTRON otk	regulatory region REDfly_CRMs
X	12359266	X_12359266_INS [dm3] X_12465233_INS [dm6]	C	CC	3.072e^-4	0.834	INTRON CG42258
2R	6679477	2R_6679477_SNP [dm3] 2R_10791972_SNP [dm6]	C	G	3.077e^-4	0.834	SYNONYMOUS_CODING mthl13 INTRON CG33144
X	3927110	X_3927110_SNP [dm3] X_4033077_SNP [dm6]	G	C	3.082e^-4	0.834	INTERGENIC
2R	9054075	2R_9054075_SNP [dm3] 2R_13166570_SNP [dm6]	C	T	3.084e^-4	0.834	UTR_5_PRIME GLaz
3L	1103268	3L_1103268_SNP [dm3] 3L_1103268_SNP [dm6]	G	T	3.084e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15029380	3R_15029380_SNP [dm3] 3R_19203658_SNP [dm6]	T	C	3.091e^-4	0.834	INTERGENIC
2R	12364288	2R_12364288_INS [dm3] 2R_16476783_INS [dm6]	C	CC	3.098e^-4	0.834	INTERGENIC
2L	17803429	2L_17803429_SNP [dm3] 2L_17803429_SNP [dm6]	A	G	3.100e^-4	0.834	SYNONYMOUS_CODING CadN2
X	16293857	X_16293857_INS [dm3] X_16399824_INS [dm6]	A	AA	3.101e^-4	0.834	UTR_3_PRIME mei-41 & 1 other
3L	6931265	3L_6931265_INS [dm3] 3L_6938165_INS [dm6]	C	CA	3.108e^-4	0.834	DOWNSTREAM CR45414 & 1 other INTERGENIC
3L	6931264	3L_6931264_SNP [dm3] 3L_6938164_SNP [dm6]	T	A	3.117e^-4	0.834	DOWNSTREAM CR45414 & 1 other INTERGENIC
2L	6037026	2L_6037026_SNP [dm3] 2L_6037026_SNP [dm6]	G	A	3.123e^-4	0.834	UTR_3_PRIME CG9117 UPSTREAM mtm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17794323	3R_17794323_SNP [dm3] 3R_21968601_SNP [dm6]	A	C	3.127e^-4	0.834	INTRON Eip93F
2R	18091436	2R_18091436_SNP [dm3] 2R_22203931_SNP [dm6]	G	A	3.137e^-4	0.834	DOWNSTREAM CR45376 INTRON CG3292
2R	4735087	2R_4735087_SNP [dm3] 2R_8847582_SNP [dm6]	A	T	3.139e^-4	0.834	INTRON sns	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12359832	X_12359832_SNP [dm3] X_12465799_SNP [dm6]	T	C	3.142e^-4	0.834	INTRON CG42258
2R	11728857	2R_11728857_SNP [dm3] 2R_15841352_SNP [dm6]	A	G	3.142e^-4	0.834	INTRON tun	regulatory region REDfly_CRMs
3L	16646861	3L_16646861_SNP [dm3] 3L_16653761_SNP [dm6]	G	T	3.146e^-4	0.834	UPSTREAM snRNA:U12:73B INTRON Baldspot
X	12360014	X_12360014_SNP [dm3] X_12465981_SNP [dm6]	A	T	3.147e^-4	0.834	INTRON CG42258
2L	2448320	2L_2448320_SNP [dm3] 2L_2448320_SNP [dm6]	G	A	3.152e^-4	0.834	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12547918	3L_12547918_INS [dm3] 3L_12554818_INS [dm6]	G	TGGAGCTA	3.153e^-4	0.834	INTRON sowah
X	16580651	X_16580651_SNP [dm3] X_16686618_SNP [dm6]	A	G	3.156e^-4	0.834	SYNONYMOUS_CODING Sep4
2L	18765025	2L_18765025_SNP [dm3] 2L_18765025_SNP [dm6]	T	C	3.172e^-4	0.834	SYNONYMOUS_CODING ham	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	19224127	2R_19224127_SNP [dm3] 2R_23336604_SNP [dm6]	C	G	3.174e^-4	0.834	INTERGENIC
3R	24351851	3R_24351851_SNP [dm3] 3R_28526129_SNP [dm6]	A	G	3.175e^-4	0.834	SYNONYMOUS_CODING Ppn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8813681	X_8813681_SNP [dm3] X_8919648_SNP [dm6]	T	C	3.176e^-4	0.834	INTRON rdgA EXON CR44111
2L	7968649	2L_7968649_SNP [dm3] 2L_7968649_SNP [dm6]	T	C	3.188e^-4	0.836	INTRON Snoo
3R	22079707	3R_22079707_SNP [dm3] 3R_26253985_SNP [dm6]	G	A	3.200e^-4	0.838	DOWNSTREAM Ald INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
X	18045079	X_18045079_SNP [dm3] X_18151046_SNP [dm6]	T	G	3.203e^-4	0.838	INTERGENIC
2R	10101268	2R_10101268_SNP [dm3] 2R_14213763_SNP [dm6]	A	C	3.206e^-4	0.838	INTERGENIC
2L	9981481	2L_9981481_SNP [dm3] 2L_9981481_SNP [dm6]	A	T	3.215e^-4	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	26028398	3R_26028398_SNP [dm3] 3R_30202676_SNP [dm6]	G	A	3.217e^-4	0.838	INTRON CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	10707288	2L_10707288_SNP [dm3] 2L_10707288_SNP [dm6]	A	G	3.229e^-4	0.839	INTRON Lip2	TF binding site mE1_TFBS_inv
2L	8053497	2L_8053497_SNP [dm3] 2L_8053497_SNP [dm6]	C	A	3.230e^-4	0.839	UTR_3_PRIME CG7466 DOWNSTREAM poe
3L	2013596	3L_2013596_SNP [dm3] 3L_2013596_SNP [dm6]	A	G	3.233e^-4	0.839	INTERGENIC
2R	18095145	2R_18095145_SNP [dm3] 2R_22207640_SNP [dm6]	C	T	3.237e^-4	0.839	SYNONYMOUS_CODING CG3290 DOWNSTREAM CG3264	TF binding site mE1_TFBS_HSA
3L	16388169	3L_16388169_SNP [dm3] 3L_16395069_SNP [dm6]	T	C	3.247e^-4	0.84	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
2L	15470927	2L_15470927_SNP [dm3] 2L_15470927_SNP [dm6]	C	T	3.256e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15851328	2R_15851328_SNP [dm3] 2R_19963823_SNP [dm6]	G	A	3.293e^-4	0.848	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2537903	2L_2537903_SNP [dm3] 2L_2537903_SNP [dm6]	G	A	3.295e^-4	0.848	INTERGENIC
3L	18023067	3L_18023067_SNP [dm3] 3L_18029967_SNP [dm6]	T	C	3.298e^-4	0.848	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2876443	3L_2876443_SNP [dm3] 3L_2876443_SNP [dm6]	T	C	3.299e^-4	0.848	INTRON CG43444
3R	26256533	3R_26256533_DEL [dm3] 3R_30430811_DEL [dm6]	AATATCATCTGAAGAATATC...	A	3.314e^-4	0.849	INTRON CG15533	TF binding site mE1_TFBS_cad
X	10798311	X_10798311_DEL [dm3] X_10904278_DEL [dm6]	ACATA	A	3.315e^-4	0.849	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19312771	3L_19312771_SNP [dm3] 3L_19319671_SNP [dm6]	A	C	3.317e^-4	0.849	INTRON pip
2L	4069673	2L_4069673_SNP [dm3] 2L_4069673_SNP [dm6]	C	G	3.322e^-4	0.849	INTRON ed
X	4836717	X_4836717_SNP [dm3] X_4942684_SNP [dm6]	T	C	3.330e^-4	0.85	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da
2L	8138598	2L_8138598_SNP [dm3] 2L_8138598_SNP [dm6]	T	C	3.337e^-4	0.85	NON_SYNONYMOUS_CODING CG8552 START_GAINED CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18859953	3R_18859953_SNP [dm3] 3R_23034231_SNP [dm6]	G	A	3.338e^-4	0.85	SYNONYMOUS_CODING CG13833
2R	16972266	2R_16972266_SNP [dm3] 2R_21084761_SNP [dm6]	G	A	3.343e^-4	0.85	INTRON Treh	TF binding site mE1_TFBS_cad
3L	327094	3L_327094_SNP [dm3] 3L_327094_SNP [dm6]	G	A	3.351e^-4	0.851	INTRON Atac3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14031319	3R_14031319_SNP [dm3] 3R_18205597_SNP [dm6]	T	C	3.357e^-4	0.851	INTRON CG7985
3L	1715814	3L_1715814_SNP [dm3] 3L_1715814_SNP [dm6]	T	C	3.365e^-4	0.852	UTR_3_PRIME drpr DOWNSTREAM CG7991
2R	2929439	2R_2929439_SNP [dm3] 2R_7041934_SNP [dm6]	A	G	3.385e^-4	0.855	SYNONYMOUS_CODING Tsp42Ej UPSTREAM Tsp42Ek	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21949016	X_21949016_SNP [dm3] X_22547180_SNP [dm6]	T	A	3.393e^-4	0.855	SYNONYMOUS_CODING CG17601
3R	13439221	3R_13439221_SNP [dm3] 3R_17613499_SNP [dm6]	A	C	3.393e^-4	0.855	UPSTREAM CG14327 DOWNSTREAM CG34281 INTERGENIC
3L	12041277	3L_12041277_SNP [dm3] 3L_12048177_SNP [dm6]	A	C	3.400e^-4	0.856	INTRON rols
3R	18859868	3R_18859868_SNP [dm3] 3R_23034146_SNP [dm6]	C	T	3.406e^-4	0.856	INTRON CG13833
X	18451105	X_18451105_SNP [dm3] X_18557072_SNP [dm6]	T	G	3.407e^-4	0.856	INTRON Bx
2R	9055168	2R_9055168_SNP [dm3] 2R_13167663_SNP [dm6]	T	C	3.419e^-4	0.856	UPSTREAM Spt-I DOWNSTREAM CR45142 INTRON GLaz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
X	9486694	X_9486694_SNP [dm3] X_9592661_SNP [dm6]	T	A	3.424e^-4	0.856	INTERGENIC
3R	18226136	3R_18226136_DEL [dm3] 3R_22400414_DEL [dm6]	AT	A	3.427e^-4	0.856	INTERGENIC
3L	10792811	3L_10792811_SNP [dm3] 3L_10799711_SNP [dm6]	G	T	3.430e^-4	0.856	INTERGENIC
2R	4608955	2R_4608955_SNP [dm3] 2R_8721450_SNP [dm6]	A	C	3.433e^-4	0.856	NON_SYNONYMOUS_CODING CG30357 INTRON CG14767	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15396094	2L_15396094_SNP [dm3] 2L_15396094_SNP [dm6]	C	G	3.441e^-4	0.857	UPSTREAM CR44859 INTERGENIC
X	8221355	X_8221355_INS [dm3] X_8327322_INS [dm6]	T	TGT	3.450e^-4	0.858	INTRON nAChRalpha3
3L	5307053	3L_5307053_SNP [dm3] 3L_5313953_SNP [dm6]	T	C	3.458e^-4	0.859	INTERGENIC
2R	9246707	2R_9246707_SNP [dm3] 2R_13359202_SNP [dm6]	T	C	3.468e^-4	0.859	INTERGENIC
2R	2922952	2R_2922952_SNP [dm3] 2R_7035447_SNP [dm6]	A	G	3.472e^-4	0.859	DOWNSTREAM Tsp42Eh INTRON Tsp42Ei
X	17714518	X_17714518_SNP [dm3] X_17820485_SNP [dm6]	A	G	3.477e^-4	0.859	UPSTREAM CG12986 DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7050714	2R_7050714_SNP [dm3] 2R_11163209_SNP [dm6]	A	C	3.481e^-4	0.859	INTRON shn & 1 other
3R	24636358	3R_24636358_SNP [dm3] 3R_28810636_SNP [dm6]	G	A	3.482e^-4	0.859	SYNONYMOUS_CODING wdn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	20971502	3R_20971502_SNP [dm3] 3R_25145780_SNP [dm6]	A	G	3.491e^-4	0.86	INTERGENIC
3L	7936268	3L_7936268_SNP [dm3] 3L_7943168_SNP [dm6]	C	G	3.493e^-4	0.86	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13747822	2R_13747822_MNP [dm3] 2R_17860317_MNP [dm6]	TAT	ACA	3.508e^-4	0.862	UTR_3_PRIME olf186-F UPSTREAM CG14490 DOWNSTREAM thr & 1 other
2L	13247177	2L_13247177_SNP [dm3] 2L_13247177_SNP [dm6]	C	A	3.512e^-4	0.862	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18085457	2R_18085457_SNP [dm3] 2R_22197952_SNP [dm6]	T	A	3.538e^-4	0.862	UPSTREAM snoRNA:Or-CD1 INTRON Swim
3R	18154701	3R_18154701_SNP [dm3] 3R_22328979_SNP [dm6]	G	C	3.538e^-4	0.862	UPSTREAM CG7080 INTERGENIC
X	10862328	X_10862328_SNP [dm3] X_10968295_SNP [dm6]	T	C	3.547e^-4	0.862	UTR_3_PRIME CG42339
3R	18859880	3R_18859880_DEL [dm3] 3R_23034158_DEL [dm6]	TT	T	3.562e^-4	0.862	INTRON CG13833
X	17323339	X_17323339_SNP [dm3] X_17429306_SNP [dm6]	C	T	3.563e^-4	0.862	DOWNSTREAM CG5613 INTRON CG12994
2L	20527678	2L_20527678_SNP [dm3] 2L_20527678_SNP [dm6]	C	T	3.564e^-4	0.862	INTERGENIC
X	10862419	X_10862419_SNP [dm3] X_10968386_SNP [dm6]	C	T	3.564e^-4	0.862	UTR_3_PRIME CG42339
3L	5329128	3L_5329128_SNP [dm3] 3L_5336028_SNP [dm6]	T	C	3.586e^-4	0.862	DOWNSTREAM CR45742 INTERGENIC
2L	19206244	2L_19206244_SNP [dm3] 2L_19206244_SNP [dm6]	T	G	3.587e^-4	0.862	SYNONYMOUS_CODING drl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17714467	X_17714467_SNP [dm3] X_17820434_SNP [dm6]	A	T	3.590e^-4	0.862	UPSTREAM CG12986 DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	16549159	2L_16549159_SNP [dm3] 2L_16549159_SNP [dm6]	T	G	3.591e^-4	0.862	DOWNSTREAM CG5968 INTRON CG42389
2L	19908911	2L_19908911_SNP [dm3] 2L_19908911_SNP [dm6]	G	A	3.592e^-4	0.862	INTRON sick	TF binding site mE1_TFBS_chinmo
3R	20127017	3R_20127017_SNP [dm3] 3R_24301295_SNP [dm6]	A	G	3.601e^-4	0.862	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1093235	2L_1093235_SNP [dm3] 2L_1093235_SNP [dm6]	T	A	3.602e^-4	0.862	INTRON CG4629
2L	8915610	2L_8915610_SNP [dm3] 2L_8915610_SNP [dm6]	C	T	3.603e^-4	0.862	UTR_5_PRIME CG34398 INTRON CG34398
3R	21997245	3R_21997245_SNP [dm3] 3R_26171523_SNP [dm6]	G	A	3.605e^-4	0.862	INTRON CG31323
2L	20504581	2L_20504581_SNP [dm3] 2L_20504581_SNP [dm6]	T	G	3.608e^-4	0.862	INTERGENIC
2R	18543147	2R_18543147_SNP [dm3] 2R_22655642_SNP [dm6]	A	T	3.609e^-4	0.862	SYNONYMOUS_CODING CG43326 UTR_3_PRIME CG43325 UPSTREAM CG30196 DOWNSTREAM CG43325 EXON CR45268	TF binding site mE1_TFBS_cad
3R	24504935	3R_24504935_DEL [dm3] 3R_28679213_DEL [dm6]	TGGACCGGCTACAGCCCCTA...	T	3.609e^-4	0.862	INTRON CG9990
2R	13600569	2R_13600569_SNP [dm3] 2R_17713064_SNP [dm6]	T	G	3.609e^-4	0.862	INTRON CG6424
3L	10997725	3L_10997725_SNP [dm3] 3L_11004625_SNP [dm6]	T	C	3.611e^-4	0.862	INTRON klu
3L	9826640	3L_9826640_SNP [dm3] 3L_9833540_SNP [dm6]	G	A	3.631e^-4	0.862	UTR_3_PRIME CG43897 DOWNSTREAM I-2
X	17249985	X_17249985_SNP [dm3] X_17355952_SNP [dm6]	A	T	3.633e^-4	0.862	INTERGENIC
3L	13844149	3L_13844149_SNP [dm3] 3L_13851049_SNP [dm6]	C	T	3.645e^-4	0.862	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3R	16611814	3R_16611814_SNP [dm3] 3R_20786092_SNP [dm6]	C	A	3.651e^-4	0.862	INTRON Syp
2L	6729940	2L_6729940_SNP [dm3] 2L_6729940_SNP [dm6]	C	A	3.657e^-4	0.862	SPLICE_SITE_REGION Liprin-alpha INTRON Liprin-alpha
2L	9813320	2L_9813320_SNP [dm3] 2L_9813320_SNP [dm6]	A	T	3.658e^-4	0.862	INTRON nAChRalpha6
2R	10456107	2R_10456107_SNP [dm3] 2R_14568602_SNP [dm6]	G	T	3.662e^-4	0.862	INTRON ttv
2R	18090290	2R_18090290_SNP [dm3] 2R_22202785_SNP [dm6]	A	G	3.662e^-4	0.862	UPSTREAM Swim DOWNSTREAM CG3292 EXON CR45376
3R	8580859	3R_8580859_SNP [dm3] 3R_12755137_SNP [dm6]	T	G	3.669e^-4	0.862	INTRON beat-Vc	TF binding site mE1_TFBS_HSA
2R	7038197	2R_7038197_SNP [dm3] 2R_11150692_SNP [dm6]	T	C	3.670e^-4	0.862	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	17583103	2L_17583103_SNP [dm3] 2L_17583103_SNP [dm6]	G	A	3.672e^-4	0.862	UPSTREAM CR45111 INTERGENIC
3L	11684540	3L_11684540_INS [dm3] 3L_11691440_INS [dm6]	A	TT	3.674e^-4	0.862	UPSTREAM CG14135 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	8579133	2R_8579133_SNP [dm3] 2R_12691628_SNP [dm6]	C	T	3.678e^-4	0.862	SYNONYMOUS_CODING CG8768 UPSTREAM Obp49a
X	10271222	X_10271222_SNP [dm3] X_10377189_SNP [dm6]	T	C	3.684e^-4	0.862	SYNONYMOUS_CODING CG32681 DOWNSTREAM CG2898 INTRON CG17841	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19506047	3R_19506047_SNP [dm3] 3R_23680325_SNP [dm6]	G	A	3.689e^-4	0.862	SYNONYMOUS_CODING eIF-3p66 DOWNSTREAM CG10157	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17300736	2R_17300736_SNP [dm3] 2R_21413231_SNP [dm6]	C	G	3.694e^-4	0.862	INTRON Sdc
3R	18859876	3R_18859876_INS [dm3] 3R_23034154_INS [dm6]	T	TGT	3.695e^-4	0.862	INTRON CG13833
3L	502813	3L_502813_SNP [dm3] 3L_502813_SNP [dm6]	T	C	3.699e^-4	0.862	INTRON klar
2L	920902	2L_920902_SNP [dm3] 2L_920902_SNP [dm6]	A	G	3.700e^-4	0.862	INTERGENIC
2R	11790094	2R_11790094_SNP [dm3] 2R_15902589_SNP [dm6]	A	T	3.706e^-4	0.862	INTRON sli	TF binding site BDTNP1_TFBS_twi
3R	25629657	3R_25629657_SNP [dm3] 3R_29803935_SNP [dm6]	C	T	3.707e^-4	0.862	SYNONYMOUS_CODING CG7789 UPSTREAM CG7834 DOWNSTREAM ncd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	12645441	2L_12645441_SNP [dm3] 2L_12645441_SNP [dm6]	T	G	3.708e^-4	0.862	INTRON Ref2
3L	8514471	3L_8514471_SNP [dm3] 3L_8521371_SNP [dm6]	G	A	3.728e^-4	0.864	SYNONYMOUS_CODING se DOWNSTREAM GstO2	TF binding site mE1_TFBS_sens
3L	7267603	3L_7267603_SNP [dm3] 3L_7274503_SNP [dm6]	A	G	3.728e^-4	0.864	SYNONYMOUS_CODING unc-13-4A
2R	10452837	2R_10452837_SNP [dm3] 2R_14565332_SNP [dm6]	C	T	3.729e^-4	0.864	INTRON ttv
X	14792663	X_14792663_SNP [dm3] X_14898630_SNP [dm6]	C	T	3.742e^-4	0.865	INTRON Flo2
X	2500226	X_2500226_SNP [dm3] X_2606193_SNP [dm6]	C	T	3.755e^-4	0.866	SYNONYMOUS_CODING Zw10 DOWNSTREAM Bzd	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25216302	3R_25216302_SNP [dm3] 3R_29390580_SNP [dm6]	A	T	3.759e^-4	0.866	INTRON Ptp99A
2L	2928457	2L_2928457_SNP [dm3] 2L_2928457_SNP [dm6]	A	G	3.761e^-4	0.866	INTRON lilli
2L	8139524	2L_8139524_SNP [dm3] 2L_8139524_SNP [dm6]	G	T	3.767e^-4	0.866	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
X	15163136	X_15163136_SNP [dm3] X_15269103_SNP [dm6]	G	C	3.771e^-4	0.866	INTERGENIC
3R	22079550	3R_22079550_SNP [dm3] 3R_26253828_SNP [dm6]	G	A	3.772e^-4	0.866	DOWNSTREAM CR42745 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3L	2358785	3L_2358785_SNP [dm3] 3L_2358785_SNP [dm6]	T	G	3.778e^-4	0.866	INTERGENIC
2R	4738336	2R_4738336_SNP [dm3] 2R_8850831_SNP [dm6]	G	A	3.783e^-4	0.866	INTRON sns	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	15857978	X_15857978_SNP [dm3] X_15963945_SNP [dm6]	A	C	3.790e^-4	0.867	SYNONYMOUS_CODING mmd
3L	16077399	3L_16077399_SNP [dm3] 3L_16084299_SNP [dm6]	T	C	3.807e^-4	0.869	SYNONYMOUS_CODING CG13075 DOWNSTREAM CG33258 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6235364	2L_6235364_SNP [dm3] 2L_6235364_SNP [dm6]	A	T	3.818e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	1538352	2L_1538352_SNP [dm3] 2L_1538352_SNP [dm6]	A	G	3.832e^-4	0.869	INTERGENIC
2L	13140384	2L_13140384_SNP [dm3] 2L_13140384_SNP [dm6]	T	C	3.833e^-4	0.869	INTERGENIC	transposable element FlyBase
3L	10540839	3L_10540839_SNP [dm3] 3L_10547739_SNP [dm6]	T	C	3.848e^-4	0.869	INTRON A2bp1
3L	800947	3L_800947_SNP [dm3] 3L_800947_SNP [dm6]	T	A	3.861e^-4	0.869	INTERGENIC
X	21944010	X_21944010_SNP [dm3] X_22542174_SNP [dm6]	G	C	3.869e^-4	0.869	DOWNSTREAM CG17599 & 1 other INTERGENIC
3R	27304336	3R_27304336_SNP [dm3] 3R_31478614_SNP [dm6]	C	T	3.870e^-4	0.869	INTERGENIC
X	9045652	X_9045652_SNP [dm3] X_9151619_SNP [dm6]	G	C	3.873e^-4	0.869	NON_SYNONYMOUS_CODING dalao DOWNSTREAM His3.3B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	19464741	3R_19464741_SNP [dm3] 3R_23639019_SNP [dm6]	G	A	3.873e^-4	0.869	INTRON CG31145	TF binding site mE1_TFBS_inv
X	3779802	X_3779802_SNP [dm3] X_3885769_SNP [dm6]	G	A	3.878e^-4	0.869	INTRON CG15239
X	11512511	X_11512511_SNP [dm3] X_11618478_SNP [dm6]	G	A	3.883e^-4	0.869	SYNONYMOUS_CODING Met	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6234979	2L_6234979_SNP [dm3] 2L_6234979_SNP [dm6]	A	T	3.888e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	13887503	2L_13887503_SNP [dm3] 2L_13887503_SNP [dm6]	A	T	3.891e^-4	0.869	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	13411089	2R_13411089_SNP [dm3] 2R_17523584_SNP [dm6]	A	G	3.891e^-4	0.869	INTRON Patronin
3R	22506853	3R_22506853_SNP [dm3] 3R_26681131_SNP [dm6]	G	A	3.899e^-4	0.869	INTRON beat-VII
2L	19210059	2L_19210059_SNP [dm3] 2L_19210059_SNP [dm6]	C	T	3.907e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15651273	3L_15651273_SNP [dm3] 3L_15658173_SNP [dm6]	C	T	3.920e^-4	0.869	UPSTREAM Eig71Ef DOWNSTREAM Eig71Eh & 1 other INTERGENIC
3R	3547305	3R_3547305_SNP [dm3] 3R_7721583_SNP [dm6]	T	A	3.924e^-4	0.869	UPSTREAM CG2616 DOWNSTREAM CR44260 INTERGENIC
2L	3892660	2L_3892660_SNP [dm3] 2L_3892660_SNP [dm6]	T	G	3.924e^-4	0.869	INTRON capu
2R	19501280	2R_19501280_SNP [dm3] 2R_23613757_SNP [dm6]	A	G	3.939e^-4	0.869	INTRON CG17664 & 1 other
2R	3188604	2R_3188604_SNP [dm3] 2R_7301099_SNP [dm6]	A	G	3.941e^-4	0.869	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	4815100	2R_4815100_SNP [dm3] 2R_8927595_SNP [dm6]	G	A	3.960e^-4	0.869	NON_SYNONYMOUS_CODING CG8235 UPSTREAM PAN2 DOWNSTREAM CG8237	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7714652	2L_7714652_SNP [dm3] 2L_7714652_SNP [dm6]	G	A	3.969e^-4	0.869	DOWNSTREAM Ntl INTRON CG33296
3L	6931269	3L_6931269_SNP [dm3] 3L_6938169_SNP [dm6]	A	G	3.969e^-4	0.869	DOWNSTREAM CR45414 & 1 other INTERGENIC
3L	12305901	3L_12305901_SNP [dm3] 3L_12312801_SNP [dm6]	A	G	3.972e^-4	0.869	DOWNSTREAM CG44355 INTERGENIC
X	14514590	X_14514590_SNP [dm3] X_14620557_SNP [dm6]	G	C	3.999e^-4	0.869	INTRON NetA	TF binding site BDTNP1_TFBS_dl
3R	16943022	3R_16943022_SNP [dm3] 3R_21117300_SNP [dm6]	A	T	4.003e^-4	0.869	SYNONYMOUS_CODING ppan DOWNSTREAM Bdbt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3389510	2L_3389510_SNP [dm3] 2L_3389510_SNP [dm6]	A	T	4.006e^-4	0.869	EXON CR44791
3L	3248877	3L_3248877_SNP [dm3] 3L_3248877_SNP [dm6]	C	T	4.007e^-4	0.869	UTR_3_PRIME CG43389 UPSTREAM CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26976673	3R_26976673_SNP [dm3] 3R_31150951_SNP [dm6]	A	C	4.011e^-4	0.869	INTRON Gycbeta100B
3L	16103259	3L_16103259_SNP [dm3] 3L_16110159_SNP [dm6]	A	T	4.019e^-4	0.869	INTRON Zn72D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12754080	2L_12754080_SNP [dm3] 2L_12754080_SNP [dm6]	G	T	4.023e^-4	0.869	INTERGENIC
3R	17997918	3R_17997918_SNP [dm3] 3R_22172196_SNP [dm6]	C	T	4.026e^-4	0.869	INTRON SKIP	TF binding site BDTNP1_TFBS_da
3R	16943010	3R_16943010_SNP [dm3] 3R_21117288_SNP [dm6]	G	A	4.034e^-4	0.869	SYNONYMOUS_CODING ppan DOWNSTREAM Bdbt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12542773	2R_12542773_DEL [dm3] 2R_16655268_DEL [dm6]	TACACG	T	4.034e^-4	0.869	UPSTREAM Nach DOWNSTREAM Picot INTERGENIC
2R	2925082	2R_2925082_SNP [dm3] 2R_7037577_SNP [dm6]	A	G	4.041e^-4	0.869	DOWNSTREAM Tsp42Ei INTRON CG33914	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7959978	3L_7959978_SNP [dm3] 3L_7966878_SNP [dm6]	G	A	4.042e^-4	0.869	INTERGENIC
3R	21732253	3R_21732253_SNP [dm3] 3R_25906531_SNP [dm6]	T	A	4.051e^-4	0.869	UPSTREAM CG42235 EXON CR43259
3R	16614908	3R_16614908_SNP [dm3] 3R_20789186_SNP [dm6]	T	C	4.053e^-4	0.869	UPSTREAM Syp INTRON Syp
2R	4916754	2R_4916754_SNP [dm3] 2R_9029249_SNP [dm6]	A	T	4.055e^-4	0.869	INTRON CG8170
3L	11415694	3L_11415694_SNP [dm3] 3L_11422594_SNP [dm6]	A	C	4.064e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
X	15370822	X_15370822_SNP [dm3] X_15476789_SNP [dm6]	G	A	4.064e^-4	0.869	INTRON CG6324	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20570382	2R_20570382_DEL [dm3] 2R_24682859_DEL [dm6]	TAAGCCATT	T	4.070e^-4	0.869	INTRON Mmp1
X	14770344	X_14770344_SNP [dm3] X_14876311_SNP [dm6]	C	A	4.081e^-4	0.869	SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22082253	3R_22082253_SNP [dm3] 3R_26256531_SNP [dm6]	A	G	4.082e^-4	0.869	SYNONYMOUS_CODING Ald INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2856827	2R_2856827_SNP [dm3] 2R_6969322_SNP [dm6]	C	T	4.090e^-4	0.869	INTRON mim & 1 other
X	4381105	X_4381105_SNP [dm3] X_4487072_SNP [dm6]	A	C	4.097e^-4	0.869	INTRON CR32773
2R	18508369	2R_18508369_SNP [dm3] 2R_22620864_SNP [dm6]	G	T	4.103e^-4	0.869	UTR_5_PRIME CG33143
3R	18298316	3R_18298316_SNP [dm3] 3R_22472594_SNP [dm6]	A	T	4.105e^-4	0.869	INTRON Nrx-1	TF binding site mE1_TFBS_chinmo
3L	18022234	3L_18022234_SNP [dm3] 3L_18029134_SNP [dm6]	G	A	4.115e^-4	0.869	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5515408	3L_5515408_SNP [dm3] 3L_5522308_SNP [dm6]	A	T	4.116e^-4	0.869	INTRON Lkr
3R	24357526	3R_24357526_SNP [dm3] 3R_28531804_SNP [dm6]	C	A	4.117e^-4	0.869	INTRON Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	620211	2L_620211_SNP [dm3] 2L_620211_SNP [dm6]	A	T	4.130e^-4	0.869	DOWNSTREAM lectin-21Cb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15911452	3R_15911452_SNP [dm3] 3R_20085730_SNP [dm6]	A	T	4.134e^-4	0.869	INTERGENIC
3R	21889977	3R_21889977_SNP [dm3] 3R_26064255_SNP [dm6]	T	A	4.134e^-4	0.869	INTERGENIC
2R	16953887	2R_16953887_SNP [dm3] 2R_21066382_SNP [dm6]	T	C	4.136e^-4	0.869	INTRON Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1972512	2L_1972512_SNP [dm3] 2L_1972512_SNP [dm6]	T	A	4.145e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	20476804	2L_20476804_SNP [dm3] 2L_20476804_SNP [dm6]	C	T	4.146e^-4	0.869	INTRON CR44980 EXON CR43234	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3325808	3L_3325808_SNP [dm3] 3L_3325808_SNP [dm6]	G	A	4.146e^-4	0.869	UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19350229	2R_19350229_SNP [dm3] 2R_23462706_SNP [dm6]	C	A	4.147e^-4	0.869	INTRON CG43795	TF binding site mE1_TFBS_inv
2R	13158167	2R_13158167_SNP [dm3] 2R_17270662_SNP [dm6]	T	C	4.148e^-4	0.869	INTRON mbl
X	7770427	X_7770427_SNP [dm3] X_7876394_SNP [dm6]	T	C	4.152e^-4	0.869	SYNONYMOUS_CODING Ir7c DOWNSTREAM Ir7d
2L	5122138	2L_5122138_SNP [dm3] 2L_5122138_SNP [dm6]	A	C	4.154e^-4	0.869	INTRON Msp300
2L	12944922	2L_12944922_SNP [dm3] 2L_12944922_SNP [dm6]	G	T	4.158e^-4	0.869	INTERGENIC
2R	18076843	2R_18076843_SNP [dm3] 2R_22189338_SNP [dm6]	G	C	4.162e^-4	0.869	UTR_3_PRIME Vps35 DOWNSTREAM Swim
X	15658471	X_15658471_SNP [dm3] X_15764438_SNP [dm6]	C	T	4.169e^-4	0.869	SYNONYMOUS_CODING CG17209	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7575401	2L_7575401_SNP [dm3] 2L_7575401_SNP [dm6]	C	A	4.172e^-4	0.869	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl
2R	7038837	2R_7038837_SNP [dm3] 2R_11151332_SNP [dm6]	G	C	4.174e^-4	0.869	INTRON CG13229
2L	13887933	2L_13887933_SNP [dm3] 2L_13887933_SNP [dm6]	G	A	4.176e^-4	0.869	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16519667	3R_16519667_SNP [dm3] 3R_20693945_SNP [dm6]	A	G	4.177e^-4	0.869	INTRON Oamb
2R	18091432	2R_18091432_SNP [dm3] 2R_22203927_SNP [dm6]	G	A	4.182e^-4	0.869	DOWNSTREAM CR45376 INTRON CG3292
2L	12254897	2L_12254897_DEL [dm3] 2L_12254897_DEL [dm6]	AA	A	4.186e^-4	0.869	INTRON aret
2R	15136647	2R_15136647_SNP [dm3] 2R_19249142_SNP [dm6]	G	A	4.189e^-4	0.869	UPSTREAM wbl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
2R	16380626	2R_16380626_SNP [dm3] 2R_20493121_SNP [dm6]	C	T	4.197e^-4	0.869	UPSTREAM CR44643 INTERGENIC
3R	10775668	3R_10775668_SNP [dm3] 3R_14949946_SNP [dm6]	A	G	4.199e^-4	0.869	INTERGENIC
3R	17109019	3R_17109019_SNP [dm3] 3R_21283297_SNP [dm6]	T	G	4.201e^-4	0.869	INTRON SIFaR & 1 other
3L	6119956	3L_6119956_SNP [dm3] 3L_6126856_SNP [dm6]	T	C	4.202e^-4	0.869	INTRON l_3_mbn
2R	15838769	2R_15838769_SNP [dm3] 2R_19951264_SNP [dm6]	T	C	4.202e^-4	0.869	UPSTREAM CG10822 INTERGENIC
X	18711994	X_18711994_SNP [dm3] X_18817961_SNP [dm6]	T	G	4.204e^-4	0.869	INTRON CG42450
X	18711996	X_18711996_SNP [dm3] X_18817963_SNP [dm6]	G	A	4.204e^-4	0.869	INTRON CG42450
2R	15337398	2R_15337398_SNP [dm3] 2R_19449893_SNP [dm6]	G	C	4.211e^-4	0.869	UPSTREAM betaTub56D INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	15337412	2R_15337412_SNP [dm3] 2R_19449907_SNP [dm6]	G	A	4.211e^-4	0.869	UPSTREAM betaTub56D INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	15337585	2R_15337585_SNP [dm3] 2R_19450080_SNP [dm6]	C	T	4.211e^-4	0.869	UPSTREAM betaTub56D INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12633035	X_12633035_SNP [dm3] X_12739002_SNP [dm6]	T	C	4.212e^-4	0.869	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8071925	3L_8071925_SNP [dm3] 3L_8078825_SNP [dm6]	A	T	4.215e^-4	0.869	INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	8071926	3L_8071926_SNP [dm3] 3L_8078826_SNP [dm6]	A	T	4.215e^-4	0.869	INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	13779091	3L_13779091_INS [dm3] 3L_13785991_INS [dm6]	TGTAAT	GACTATTA	4.219e^-4	0.869	INTRON bru-3
2L	15086184	2L_15086184_SNP [dm3] 2L_15086184_SNP [dm6]	G	A	4.221e^-4	0.869	INTRON CG15270
2L	14687788	2L_14687788_SNP [dm3] 2L_14687788_SNP [dm6]	T	A	4.226e^-4	0.869	INTRON osp
2R	6719880	2R_6719880_SNP [dm3] 2R_10832375_SNP [dm6]	A	T	4.231e^-4	0.869	INTRON CG12344	TF binding site mE1_TFBS_inv
2R	16022287	2R_16022287_SNP [dm3] 2R_20134782_SNP [dm6]	T	G	4.231e^-4	0.869	INTERGENIC
3R	20031929	3R_20031929_SNP [dm3] 3R_24206207_SNP [dm6]	T	C	4.232e^-4	0.869	INTRON twin
3L	9710886	3L_9710886_SNP [dm3] 3L_9717786_SNP [dm6]	G	T	4.238e^-4	0.869	UTR_3_PRIME CG18178 DOWNSTREAM snmRNA:838 & 1 other
3R	14347866	3R_14347866_SNP [dm3] 3R_18522144_SNP [dm6]	A	T	4.243e^-4	0.869	INTRON fru
2L	7397113	2L_7397113_SNP [dm3] 2L_7397113_SNP [dm6]	C	T	4.251e^-4	0.869	INTRON CG5160
2L	10503730	2L_10503730_SNP [dm3] 2L_10503730_SNP [dm6]	A	G	4.252e^-4	0.869	INTRON Myo31DF
3R	22004930	3R_22004930_SNP [dm3] 3R_26179208_SNP [dm6]	G	C	4.254e^-4	0.869	INTRON CG31323
2R	15465831	2R_15465831_SNP [dm3] 2R_19578326_SNP [dm6]	A	G	4.262e^-4	0.869	INTRON sm
3R	22891654	3R_22891654_SNP [dm3] 3R_27065932_SNP [dm6]	T	C	4.271e^-4	0.869	SYNONYMOUS_CODING spz DOWNSTREAM CG43935	TF binding site mE1_TFBS_inv
X	19508477	X_19508477_SNP [dm3] X_19614444_SNP [dm6]	C	T	4.286e^-4	0.869	SPLICE_SITE_REGION Tyler & 1 other SYNONYMOUS_CODING Shawn UTR_3_PRIME Tyler	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26296940	3R_26296940_SNP [dm3] 3R_30471218_SNP [dm6]	C	T	4.297e^-4	0.869	INTRON PH4alphaEFB
3L	5917846	3L_5917846_MNP [dm3] 3L_5924746_MNP [dm6]	ACA	GTT	4.297e^-4	0.869	INTRON Vap-33B
3R	25219435	3R_25219435_SNP [dm3] 3R_29393713_SNP [dm6]	C	T	4.306e^-4	0.869	INTRON Ptp99A
2R	15855189	2R_15855189_SNP [dm3] 2R_19967684_SNP [dm6]	G	A	4.307e^-4	0.869	INTERGENIC
3L	10852580	3L_10852580_INS [dm3] 3L_10859480_INS [dm6]	T	TAT	4.315e^-4	0.869	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sbb
3L	1625068	3L_1625068_SNP [dm3] 3L_1625068_SNP [dm6]	T	C	4.325e^-4	0.869	SPLICE_SITE_REGION GC DOWNSTREAM CG13928 INTRON GC	TF binding site mE1_TFBS_cad
2L	5554163	2L_5554163_SNP [dm3] 2L_5554163_SNP [dm6]	G	A	4.327e^-4	0.869	SYNONYMOUS_CODING CG14017 UPSTREAM CG14013 & 1 other
3R	20947026	3R_20947026_SNP [dm3] 3R_25121304_SNP [dm6]	G	T	4.328e^-4	0.869	INTRON CG31108 & 1 other
3L	8071588	3L_8071588_SNP [dm3] 3L_8078488_SNP [dm6]	G	A	4.339e^-4	0.869	INTRON Ect4	TF binding site mE1_TFBS_Kr
2R	20681132	2R_20681132_SNP [dm3] 2R_24793609_SNP [dm6]	A	T	4.342e^-4	0.869	UPSTREAM CR43257 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18091791	2R_18091791_SNP [dm3] 2R_22204286_SNP [dm6]	G	C	4.349e^-4	0.869	SYNONYMOUS_CODING CG3292	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15337232	2R_15337232_SNP [dm3] 2R_19449727_SNP [dm6]	G	C	4.351e^-4	0.869	UPSTREAM betaTub56D INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	15477227	2R_15477227_SNP [dm3] 2R_19589722_SNP [dm6]	T	A	4.351e^-4	0.869	INTRON sm
3R	6002779	3R_6002779_SNP [dm3] 3R_10177057_SNP [dm6]	A	T	4.358e^-4	0.869	INTRON CG12814
2R	14295358	2R_14295358_SNP [dm3] 2R_18407853_SNP [dm6]	A	T	4.359e^-4	0.869	START_GAINED GstE8 UTR_5_PRIME GstE8 DOWNSTREAM GstE7	TF binding site mE1_TFBS_Trl
3R	21730825	3R_21730825_SNP [dm3] 3R_25905103_SNP [dm6]	A	C	4.376e^-4	0.869	DOWNSTREAM CG31089 & 1 other INTRON CR43259
2L	4458827	2L_4458827_SNP [dm3] 2L_4458827_SNP [dm6]	T	C	4.378e^-4	0.869	UTR_3_PRIME mRpL27 UPSTREAM RpL27A & 1 other DOWNSTREAM mRpL27	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9841374	3L_9841374_SNP [dm3] 3L_9848274_SNP [dm6]	A	T	4.386e^-4	0.869	INTRON RasGAP1
3R	17982063	3R_17982063_SNP [dm3] 3R_22156341_SNP [dm6]	A	T	4.386e^-4	0.869	INTRON SKIP
X	20842422	X_20842422_SNP [dm3] X_20971395_SNP [dm6]	C	T	4.387e^-4	0.869	INTERGENIC
3L	10764721	3L_10764721_INS [dm3] 3L_10771621_INS [dm6]	A	AA	4.411e^-4	0.869	UPSTREAM CG43245 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	21164604	X_21164604_SNP [dm3] X_21293577_SNP [dm6]	T	A	4.413e^-4	0.869	INTRON CG1718
3R	22079810	3R_22079810_SNP [dm3] 3R_26254088_SNP [dm6]	G	C	4.415e^-4	0.869	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3R	18226135	3R_18226135_SNP [dm3] 3R_22400413_SNP [dm6]	T	C	4.416e^-4	0.869	INTERGENIC
3R	3815693	3R_3815693_SNP [dm3] 3R_7989971_SNP [dm6]	T	C	4.425e^-4	0.869	INTRON CG2781
3R	21889973	3R_21889973_SNP [dm3] 3R_26064251_SNP [dm6]	C	T	4.429e^-4	0.869	INTERGENIC
2R	13112253	2R_13112253_SNP [dm3] 2R_17224748_SNP [dm6]	G	A	4.446e^-4	0.869	INTRON mbl
2L	6794457	2L_6794457_SNP [dm3] 2L_6794457_SNP [dm6]	A	G	4.447e^-4	0.869	UTR_5_PRIME nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8642395	2L_8642395_SNP [dm3] 2L_8642395_SNP [dm6]	G	T	4.447e^-4	0.869	INTRON Sema-1a
3L	11658916	3L_11658916_SNP [dm3] 3L_11665816_SNP [dm6]	C	A	4.449e^-4	0.869	INTRON CG32085
2L	20554089	2L_20554089_SNP [dm3] 2L_20554089_SNP [dm6]	G	T	4.465e^-4	0.869	INTERGENIC
3L	13778956	3L_13778956_SNP [dm3] 3L_13785856_SNP [dm6]	G	A	4.466e^-4	0.869	INTRON bru-3
2R	17003392	2R_17003392_SNP [dm3] 2R_21115887_SNP [dm6]	T	C	4.467e^-4	0.869	INTRON ktub
2R	4587535	2R_4587535_SNP [dm3] 2R_8700030_SNP [dm6]	A	T	4.472e^-4	0.869	DOWNSTREAM CG8584 INTERGENIC
2R	7604293	2R_7604293_SNP [dm3] 2R_11716788_SNP [dm6]	C	G	4.475e^-4	0.869	INTRON pyr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	10793790	3L_10793790_SNP [dm3] 3L_10800690_SNP [dm6]	A	C	4.476e^-4	0.869	UPSTREAM CG12523 INTERGENIC
2R	18128011	2R_18128011_SNP [dm3] 2R_22240506_SNP [dm6]	A	G	4.479e^-4	0.869	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11871189	2R_11871189_SNP [dm3] 2R_15983684_SNP [dm6]	T	C	4.479e^-4	0.869	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5347072	3L_5347072_SNP [dm3] 3L_5353972_SNP [dm6]	A	T	4.488e^-4	0.869	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	16077402	3L_16077402_SNP [dm3] 3L_16084302_SNP [dm6]	C	T	4.493e^-4	0.869	SYNONYMOUS_CODING CG13075 DOWNSTREAM CG33258 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3326845	2L_3326845_SNP [dm3] 2L_3326845_SNP [dm6]	G	T	4.499e^-4	0.869	DOWNSTREAM CG33281 INTERGENIC
X	20844900	X_20844900_SNP [dm3] X_20973873_SNP [dm6]	A	T	4.505e^-4	0.869	INTERGENIC
2L	20517126	2L_20517126_SNP [dm3] 2L_20517126_SNP [dm6]	G	A	4.506e^-4	0.869	INTERGENIC
3L	2341069	3L_2341069_SNP [dm3] 3L_2341069_SNP [dm6]	G	A	4.511e^-4	0.869	INTRON MsR1	TF binding site mE1_TFBS_inv
2R	14018583	2R_14018583_SNP [dm3] 2R_18131078_SNP [dm6]	T	A	4.512e^-4	0.869	DOWNSTREAM Dip3 INTRON Hsf
2L	3459230	2L_3459230_SNP [dm3] 2L_3459230_SNP [dm6]	C	T	4.517e^-4	0.869	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20423608	X_20423608_SNP [dm3] X_20552581_SNP [dm6]	T	C	4.518e^-4	0.869	INTRON RunxB
2R	15339251	2R_15339251_SNP [dm3] 2R_19451746_SNP [dm6]	A	T	4.518e^-4	0.869	UPSTREAM CG7744 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3R	19519759	3R_19519759_SNP [dm3] 3R_23694037_SNP [dm6]	T	G	4.535e^-4	0.869	NON_SYNONYMOUS_CODING CG10254 EXON CR43903	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2L	8642408	2L_8642408_SNP [dm3] 2L_8642408_SNP [dm6]	T	A	4.551e^-4	0.869	INTRON Sema-1a
3L	8063796	3L_8063796_SNP [dm3] 3L_8070696_SNP [dm6]	G	T	4.559e^-4	0.869	UPSTREAM Ect4 & 1 other INTRON Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11745142	2R_11745142_SNP [dm3] 2R_15857637_SNP [dm6]	C	A	4.562e^-4	0.869	DOWNSTREAM Gpo-1 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27369237	3R_27369237_SNP [dm3] 3R_31543515_SNP [dm6]	A	T	4.564e^-4	0.869	UTR_5_PRIME nyo	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	3365080	2L_3365080_SNP [dm3] 2L_3365080_SNP [dm6]	A	G	4.567e^-4	0.869	UTR_5_PRIME CG34394 INTRON CG34394	TF binding site mE1_TFBS_cad
2R	16953892	2R_16953892_SNP [dm3] 2R_21066387_SNP [dm6]	A	T	4.569e^-4	0.869	INTRON Cht4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3459290	2L_3459290_SNP [dm3] 2L_3459290_SNP [dm6]	C	T	4.572e^-4	0.869	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2059826	X_2059826_SNP [dm3] X_2165793_SNP [dm6]	C	T	4.580e^-4	0.869	INTRON CG3630
2R	11137045	2R_11137045_DEL [dm3] 2R_15249540_DEL [dm6]	AA	A	4.586e^-4	0.869	INTRON scb	TF binding site mE1_TFBS_cad
3L	7755978	3L_7755978_INS [dm3] 3L_7762878_INS [dm6]	A	AC	4.600e^-4	0.869	DOWNSTREAM Clk INTRON Hn
2R	19172210	2R_19172210_SNP [dm3] 2R_23284687_SNP [dm6]	T	C	4.604e^-4	0.869	SYNONYMOUS_CODING CG13541 UPSTREAM CG3124
3L	18866417	3L_18866417_SNP [dm3] 3L_18873317_SNP [dm6]	T	C	4.604e^-4	0.869	UPSTREAM Rad9 INTRON Ugt
3L	4731841	3L_4731841_SNP [dm3] 3L_4731841_SNP [dm6]	T	G	4.605e^-4	0.869	INTRON RhoGEF64C
2R	15935127	2R_15935127_SNP [dm3] 2R_20047622_SNP [dm6]	T	G	4.608e^-4	0.869	INTERGENIC
2L	3328016	2L_3328016_SNP [dm3] 2L_3328016_SNP [dm6]	C	T	4.611e^-4	0.869	INTRON CG33282
3R	25284537	3R_25284537_SNP [dm3] 3R_29458815_SNP [dm6]	A	G	4.614e^-4	0.869	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	18076880	2R_18076880_SNP [dm3] 2R_22189375_SNP [dm6]	A	G	4.614e^-4	0.869	UTR_3_PRIME Vps35 DOWNSTREAM Swim
2L	6794467	2L_6794467_MNP [dm3] 2L_6794467_MNP [dm6]	GTG	AGT	4.616e^-4	0.869	UTR_5_PRIME nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9417344	2R_9417344_SNP [dm3] 2R_13529839_SNP [dm6]	C	G	4.620e^-4	0.869	UTR_5_PRIME Vmat INTRON Vmat
3R	22088322	3R_22088322_SNP [dm3] 3R_26262600_SNP [dm6]	C	G	4.629e^-4	0.869	UPSTREAM CG6154 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	5410874	2R_5410874_SNP [dm3] 2R_9523369_SNP [dm6]	C	T	4.630e^-4	0.869	SYNONYMOUS_CODING brp INTRON brp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	843939	3L_843939_SNP [dm3] 3L_843939_SNP [dm6]	C	T	4.634e^-4	0.869	START_GAINED CG13889 UTR_5_PRIME CG13889 UPSTREAM CG13889 DOWNSTREAM Gr61a	TF binding site mE1_TFBS_chinmo
2R	4945807	2R_4945807_SNP [dm3] 2R_9058302_SNP [dm6]	G	A	4.643e^-4	0.869	INTRON CG13743
3L	7618319	3L_7618319_SNP [dm3] 3L_7625219_SNP [dm6]	A	T	4.644e^-4	0.869	INTRON CG33275	TF binding site mE1_TFBS_chinmo
X	16161908	X_16161908_SNP [dm3] X_16267875_SNP [dm6]	T	C	4.645e^-4	0.869	INTRON kat80
3R	17109017	3R_17109017_SNP [dm3] 3R_21283295_SNP [dm6]	C	A	4.650e^-4	0.869	INTRON SIFaR & 1 other
3L	7040722	3L_7040722_SNP [dm3] 3L_7047622_SNP [dm6]	A	G	4.652e^-4	0.869	UPSTREAM Mp INTRON Mp
2L	13247251	2L_13247251_SNP [dm3] 2L_13247251_SNP [dm6]	G	A	4.654e^-4	0.869	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5763865	2L_5763865_SNP [dm3] 2L_5763865_SNP [dm6]	G	A	4.664e^-4	0.869	SYNONYMOUS_CODING obst-E INTRON obst-E	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13763745	3R_13763745_SNP [dm3] 3R_17938023_SNP [dm6]	A	G	4.665e^-4	0.869	INTRON cpo

By genomic position
Variant impact
Gene name

Starvation Resistance phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results