DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.435e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.0788

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	6.123	0.0468

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2508 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	13354218	3L_13354218_SNP [dm3] 3L_13361118_SNP [dm6]	G	T	1.123e^-6	0.604	INTERGENIC
3L	8418022	3L_8418022_SNP [dm3] 3L_8424922_SNP [dm6]	A	T	1.146e^-6	0.604	UPSTREAM Cbl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17283346	2R_17283346_SNP [dm3] 2R_21395841_SNP [dm6]	C	A	1.196e^-6	0.604	INTRON Sdc
3L	12971864	3L_12971864_SNP [dm3] 3L_12978764_SNP [dm6]	C	G	1.287e^-6	0.604	INTERGENIC
3L	8418035	3L_8418035_SNP [dm3] 3L_8424935_SNP [dm6]	G	C	1.625e^-6	0.61	UPSTREAM Cbl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9338578	2L_9338578_SNP [dm3] 2L_9338578_SNP [dm6]	T	A	2.630e^-6	0.632	INTRON Eaat1
2L	9338573	2L_9338573_SNP [dm3] 2L_9338573_SNP [dm6]	C	T	2.693e^-6	0.632	INTRON Eaat1
2L	5509171	2L_5509171_SNP [dm3] 2L_5509171_SNP [dm6]	A	T	4.083e^-6	0.632	INTERGENIC
2L	8139667	2L_8139667_SNP [dm3] 2L_8139667_SNP [dm6]	T	A	4.293e^-6	0.632	SYNONYMOUS_CODING CG8552 START_GAINED CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17176035	X_17176035_SNP [dm3] X_17282002_SNP [dm6]	A	C	4.659e^-6	0.632	NON_SYNONYMOUS_CODING CG8664 UPSTREAM CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2023777	2L_2023777_SNP [dm3] 2L_2023777_SNP [dm6]	T	C	6.982e^-6	0.632	UPSTREAM CG4238 INTRON CG4238
X	11183788	X_11183788_SNP [dm3] X_11289755_SNP [dm6]	C	T	7.592e^-6	0.632	INTRON CG44422
3R	17064834	3R_17064834_INS [dm3] 3R_21239112_INS [dm6]	C	GATCA	8.468e^-6	0.632	INTERGENIC	regulatory region REDfly_CRMs
2L	7046292	2L_7046292_SNP [dm3] 2L_7046292_SNP [dm6]	C	T	8.566e^-6	0.632	UTR_5_PRIME milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13376837	3L_13376837_SNP [dm3] 3L_13383737_SNP [dm6]	A	G	8.617e^-6	0.632	SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10107924	2L_10107924_SNP [dm3] 2L_10107924_SNP [dm6]	A	C	8.684e^-6	0.632	INTRON CG44153 & 1 other
3L	15440146	3L_15440146_SNP [dm3] 3L_15447046_SNP [dm6]	T	A	9.638e^-6	0.632	INTERGENIC
X	16436846	X_16436846_SNP [dm3] X_16542813_SNP [dm6]	A	G	1.011e^-5	0.632	UTR_3_PRIME CG9902 DOWNSTREAM CG9902	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16436853	X_16436853_SNP [dm3] X_16542820_SNP [dm6]	G	C	1.011e^-5	0.632	UTR_3_PRIME CG9902 DOWNSTREAM CG9902	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17177038	X_17177038_INS [dm3] X_17283005_INS [dm6]	T	TGGAAGATCATCCAGATAGG...	1.036e^-5	0.632	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445	TF binding site mE1_TFBS_inv
2R	3588178	2R_3588178_SNP [dm3] 2R_7700673_SNP [dm6]	T	A	1.046e^-5	0.632	SYNONYMOUS_CODING CG30496 INTRON CG30493	TF binding site mE1_TFBS_sens
3L	15440151	3L_15440151_DEL [dm3] 3L_15447051_DEL [dm6]	ATAAT	A	1.064e^-5	0.632	INTERGENIC
3L	15440148	3L_15440148_SNP [dm3] 3L_15447048_SNP [dm6]	A	C	1.080e^-5	0.632	INTERGENIC
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	1.083e^-5	0.632	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
3L	12622164	3L_12622164_DEL [dm3] 3L_12629064_DEL [dm6]	TTGTAAC	T	1.132e^-5	0.632	INTRON CR32111
3L	15440158	3L_15440158_SNP [dm3] 3L_15447058_SNP [dm6]	T	A	1.133e^-5	0.632	INTERGENIC
X	6686683	X_6686683_SNP [dm3] X_6792650_SNP [dm6]	A	C	1.141e^-5	0.632	INTRON C3G
3R	7531144	3R_7531144_SNP [dm3] 3R_11705422_SNP [dm6]	A	C	1.142e^-5	0.632	DOWNSTREAM I-t INTERGENIC
X	13406514	X_13406514_SNP [dm3] X_13512481_SNP [dm6]	A	T	1.205e^-5	0.632	INTRON Neto
2R	19942587	2R_19942587_SNP [dm3] 2R_24055064_SNP [dm6]	T	C	1.252e^-5	0.632	UPSTREAM CG13563 INTRON ppk29
3L	4957043	3L_4957043_SNP [dm3] 3L_4957043_SNP [dm6]	A	G	1.272e^-5	0.632	INTRON Con
3R	24660135	3R_24660135_SNP [dm3] 3R_28834413_SNP [dm6]	C	A	1.286e^-5	0.632	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
X	3776115	X_3776115_SNP [dm3] X_3882082_SNP [dm6]	T	A	1.315e^-5	0.632	SYNONYMOUS_CODING VhaAC39-1	TF binding site mE1_TFBS_cad
3L	13350340	3L_13350340_SNP [dm3] 3L_13357240_SNP [dm6]	C	T	1.340e^-5	0.632	DOWNSTREAM Nplp2 INTERGENIC
3R	26712880	3R_26712880_SNP [dm3] 3R_30887158_SNP [dm6]	G	A	1.343e^-5	0.632	INTRON Sap-r	TF binding site mE1_TFBS_cad
3L	12882349	3L_12882349_SNP [dm3] 3L_12889249_SNP [dm6]	A	C	1.429e^-5	0.632	UPSTREAM CG43894 DOWNSTREAM CR45748 & 1 other INTERGENIC
3R	24660139	3R_24660139_SNP [dm3] 3R_28834417_SNP [dm6]	T	C	1.508e^-5	0.632	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	22951521	3R_22951521_SNP [dm3] 3R_27125799_SNP [dm6]	A	G	1.527e^-5	0.632	SYNONYMOUS_CODING CG6051	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	10589020	X_10589020_SNP [dm3] X_10694987_SNP [dm6]	A	G	1.584e^-5	0.632	INTRON X11Lbeta
2R	16980850	2R_16980850_SNP [dm3] 2R_21093345_SNP [dm6]	G	A	1.590e^-5	0.632	INTRON CG34396
2L	11372121	2L_11372121_SNP [dm3] 2L_11372121_SNP [dm6]	A	C	1.648e^-5	0.632	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2158308	3L_2158308_SNP [dm3] 3L_2158308_SNP [dm6]	C	T	1.663e^-5	0.632	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18228818	X_18228818_SNP [dm3] X_18334785_SNP [dm6]	G	A	1.759e^-5	0.632	INTRON CG6123
2L	6091666	2L_6091666_SNP [dm3] 2L_6091666_SNP [dm6]	A	C	1.809e^-5	0.632	NON_SYNONYMOUS_CODING CG45075 UTR_5_PRIME Kr-h1 INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	15876969	X_15876969_SNP [dm3] X_15982936_SNP [dm6]	A	C	1.846e^-5	0.632	UTR_5_PRIME CG9170 UPSTREAM CG8931	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3572008	2R_3572008_SNP [dm3] 2R_7684503_SNP [dm6]	C	A	1.946e^-5	0.632	INTRON CG1399
3R	26712730	3R_26712730_SNP [dm3] 3R_30887008_SNP [dm6]	C	A	1.958e^-5	0.632	INTRON Sap-r	TF binding site mE1_TFBS_cad
X	17176796	X_17176796_SNP [dm3] X_17282763_SNP [dm6]	T	C	1.962e^-5	0.632	UTR_5_PRIME CG5445 UPSTREAM CG8664 DOWNSTREAM CG8661	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3L	5982519	3L_5982519_SNP [dm3] 3L_5989419_SNP [dm6]	T	C	1.981e^-5	0.632	INTERGENIC
X	6899942	X_6899942_SNP [dm3] X_7005909_SNP [dm6]	T	C	1.991e^-5	0.632	INTRON Inx7
2L	19504320	2L_19504320_SNP [dm3] 2L_19504320_SNP [dm6]	A	T	1.999e^-5	0.632	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19504326	2L_19504326_SNP [dm3] 2L_19504326_SNP [dm6]	C	T	1.999e^-5	0.632	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18535988	3L_18535988_SNP [dm3] 3L_18542888_SNP [dm6]	C	T	2.003e^-5	0.632	INTERGENIC
2L	17096658	2L_17096658_SNP [dm3] 2L_17096658_SNP [dm6]	A	T	2.019e^-5	0.632	INTERGENIC
2L	19504932	2L_19504932_SNP [dm3] 2L_19504932_SNP [dm6]	C	T	2.108e^-5	0.632	SYNONYMOUS_CODING CG10188	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9563201	3L_9563201_SNP [dm3] 3L_9570101_SNP [dm6]	C	T	2.113e^-5	0.632	INTRON CG42673
2R	19049526	2R_19049526_SNP [dm3] 2R_23162003_SNP [dm6]	T	A	2.196e^-5	0.632	SYNONYMOUS_CODING CG9899
2L	3954063	2L_3954063_SNP [dm3] 2L_3954063_SNP [dm6]	G	A	2.206e^-5	0.632	INTRON fred
3L	10561289	3L_10561289_SNP [dm3] 3L_10568189_SNP [dm6]	C	G	2.209e^-5	0.632	NON_SYNONYMOUS_CODING A2bp1 INTRON A2bp1
2L	3954062	2L_3954062_SNP [dm3] 2L_3954062_SNP [dm6]	G	A	2.218e^-5	0.632	INTRON fred
X	10588055	X_10588055_SNP [dm3] X_10694022_SNP [dm6]	A	G	2.230e^-5	0.632	INTRON X11Lbeta
2L	10830936	2L_10830936_DEL [dm3] 2L_10830936_DEL [dm6]	TC	T	2.234e^-5	0.632	INTRON Nos
3L	11837424	3L_11837424_SNP [dm3] 3L_11844324_SNP [dm6]	G	T	2.241e^-5	0.632	INTERGENIC
3R	26712976	3R_26712976_SNP [dm3] 3R_30887254_SNP [dm6]	A	T	2.291e^-5	0.632	INTRON Sap-r
3R	21513204	3R_21513204_SNP [dm3] 3R_25687482_SNP [dm6]	A	C	2.399e^-5	0.632	UPSTREAM CLS INTERGENIC	TF binding site mE1_TFBS_cad
X	17176893	X_17176893_SNP [dm3] X_17282860_SNP [dm6]	A	G	2.426e^-5	0.632	UPSTREAM CG8664 DOWNSTREAM CG8661 INTRON CG5445	TF binding site mE1_TFBS_inv
3L	7755554	3L_7755554_SNP [dm3] 3L_7762454_SNP [dm6]	C	T	2.456e^-5	0.632	SYNONYMOUS_CODING Hn DOWNSTREAM Clk
X	17179596	X_17179596_SNP [dm3] X_17285563_SNP [dm6]	G	A	2.500e^-5	0.632	DOWNSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl
3L	4957037	3L_4957037_SNP [dm3] 3L_4957037_SNP [dm6]	C	T	2.504e^-5	0.632	INTRON Con
3L	12844018	3L_12844018_SNP [dm3] 3L_12850918_SNP [dm6]	T	C	2.550e^-5	0.632	SYNONYMOUS_CODING Wbp2 UPSTREAM CG10948	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16399527	3L_16399527_SNP [dm3] 3L_16406427_SNP [dm6]	A	T	2.570e^-5	0.632	INTRON fax
2L	5509172	2L_5509172_SNP [dm3] 2L_5509172_SNP [dm6]	G	T	2.658e^-5	0.632	INTERGENIC
X	18537891	X_18537891_SNP [dm3] X_18643858_SNP [dm6]	T	C	2.665e^-5	0.632	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7794857	3R_7794857_SNP [dm3] 3R_11969135_SNP [dm6]	A	C	2.714e^-5	0.632	INTRON GC1
2L	11372106	2L_11372106_SNP [dm3] 2L_11372106_SNP [dm6]	C	T	2.737e^-5	0.632	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4932450	3L_4932450_SNP [dm3] 3L_4932450_SNP [dm6]	A	G	2.800e^-5	0.632	INTERGENIC	regulatory region REDfly_CRMs
3R	19723072	3R_19723072_SNP [dm3] 3R_23897350_SNP [dm6]	C	T	2.855e^-5	0.632	SPLICE_SITE_REGION sba INTRON sba
3L	11837443	3L_11837443_SNP [dm3] 3L_11844343_SNP [dm6]	C	T	2.871e^-5	0.632	INTERGENIC
3L	14368641	3L_14368641_SNP [dm3] 3L_14375541_SNP [dm6]	T	A	2.913e^-5	0.632	INTERGENIC
3R	17735740	3R_17735740_SNP [dm3] 3R_21910018_SNP [dm6]	A	T	2.921e^-5	0.632	INTERGENIC
X	14566536	X_14566536_SNP [dm3] X_14672503_SNP [dm6]	T	G	2.930e^-5	0.632	INTERGENIC
2L	6088913	2L_6088913_SNP [dm3] 2L_6088913_SNP [dm6]	C	T	2.997e^-5	0.632	INTRON Kr-h1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
X	18544669	X_18544669_SNP [dm3] X_18650636_SNP [dm6]	C	T	3.020e^-5	0.632	UPSTREAM CG6617 DOWNSTREAM Ing3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	25741574	3R_25741574_SNP [dm3] 3R_29915852_SNP [dm6]	A	G	3.025e^-5	0.632	SYNONYMOUS_CODING trp UTR_3_PRIME trp	TF binding site mE1_TFBS_chinmo
2L	924818	2L_924818_SNP [dm3] 2L_924818_SNP [dm6]	G	A	3.040e^-5	0.632	INTRON CG4341
2L	13501584	2L_13501584_SNP [dm3] 2L_13501584_SNP [dm6]	G	T	3.084e^-5	0.632	UTR_3_PRIME B4
X	3793894	X_3793894_SNP [dm3] X_3899861_SNP [dm6]	G	C	3.266e^-5	0.632	INTRON CG42541
3R	25524290	3R_25524290_INS [dm3] 3R_29698568_INS [dm6]	G	GAG	3.303e^-5	0.632	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7213844	2R_7213844_SNP [dm3] 2R_11326339_SNP [dm6]	G	A	3.425e^-5	0.632	INTRON sha	TF binding site mE1_TFBS_Trl
X	3778948	X_3778948_INS [dm3] X_3884915_INS [dm6]	T	TCG	3.448e^-5	0.632	INTRON CG15239
X	17175125	X_17175125_SNP [dm3] X_17281092_SNP [dm6]	A	G	3.537e^-5	0.632	UTR_3_PRIME CG8664 DOWNSTREAM CG8664 & 1 other	transposable element FlyBase
2L	20476118	2L_20476118_SNP [dm3] 2L_20476118_SNP [dm6]	C	T	3.543e^-5	0.632	DOWNSTREAM CR43234 INTRON CR44980	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	22994718	3R_22994718_SNP [dm3] 3R_27168996_SNP [dm6]	G	A	3.545e^-5	0.632	INTERGENIC	regulatory region REDfly_CRMs
3L	16399528	3L_16399528_SNP [dm3] 3L_16406428_SNP [dm6]	G	A	3.559e^-5	0.632	INTRON fax
X	18546216	X_18546216_SNP [dm3] X_18652183_SNP [dm6]	G	A	3.612e^-5	0.632	SYNONYMOUS_CODING Ing3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	908421	2L_908421_INS [dm3] 2L_908421_INS [dm6]	T	TGTCATATCATGATATCA...	3.684e^-5	0.632	INTERGENIC
3R	3735139	3R_3735139_SNP [dm3] 3R_7909417_SNP [dm6]	T	A	3.694e^-5	0.632	UTR_3_PRIME Taf7 DOWNSTREAM Prat & 1 other
X	12096109	X_12096109_SNP [dm3] X_12202076_SNP [dm6]	A	G	3.702e^-5	0.632	INTRON Ten-a
2L	5899820	2L_5899820_SNP [dm3] 2L_5899820_SNP [dm6]	A	C	3.715e^-5	0.632	DOWNSTREAM CR44579 INTERGENIC
X	20839875	X_20839875_SNP [dm3] X_20968848_SNP [dm6]	C	A	3.727e^-5	0.632	INTERGENIC
3L	4994646	3L_4994646_SNP [dm3] 3L_4994646_SNP [dm6]	A	C	3.765e^-5	0.632	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	19509155	2L_19509155_DEL [dm3] 2L_19509155_DEL [dm6]	CGC	C	3.790e^-5	0.632	UTR_3_PRIME CG10186 UPSTREAM CG10188 DOWNSTREAM CG10186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1720627	2L_1720627_SNP [dm3] 2L_1720627_SNP [dm6]	T	C	3.797e^-5	0.632	INTRON Rim2
2L	921992	2L_921992_SNP [dm3] 2L_921992_SNP [dm6]	C	T	3.837e^-5	0.632	UPSTREAM CG4341 INTERGENIC
3R	26712602	3R_26712602_SNP [dm3] 3R_30886880_SNP [dm6]	G	A	3.863e^-5	0.632	SYNONYMOUS_CODING Sap-r UTR_5_PRIME Sap-r	TF binding site mE1_TFBS_cad
2L	7153719	2L_7153719_SNP [dm3] 2L_7153719_SNP [dm6]	G	A	3.880e^-5	0.632	INTRON Pvf3
X	16436859	X_16436859_SNP [dm3] X_16542826_SNP [dm6]	G	A	3.883e^-5	0.632	UTR_3_PRIME CG9902 DOWNSTREAM CG9902	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16728723	2L_16728723_SNP [dm3] 2L_16728723_SNP [dm6]	T	C	3.918e^-5	0.632	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	14649532	2R_14649532_SNP [dm3] 2R_18762027_SNP [dm6]	C	G	3.950e^-5	0.632	UTR_5_PRIME Mctp UPSTREAM Jabba
3R	22759490	3R_22759490_SNP [dm3] 3R_26933768_SNP [dm6]	C	A	4.000e^-5	0.632	INTRON sda
2R	19559178	2R_19559178_SNP [dm3] 2R_23671655_SNP [dm6]	C	G	4.040e^-5	0.632	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19502543	2L_19502543_SNP [dm3] 2L_19502543_SNP [dm6]	G	A	4.046e^-5	0.632	UTR_3_PRIME CG10188 DOWNSTREAM Top3alpha
3L	19937617	3L_19937617_SNP [dm3] 3L_19944517_SNP [dm6]	C	T	4.047e^-5	0.632	INTRON Ac76E
3L	4941841	3L_4941841_SNP [dm3] 3L_4941841_SNP [dm6]	T	C	4.063e^-5	0.632	INTRON Con
3R	24659953	3R_24659953_SNP [dm3] 3R_28834231_SNP [dm6]	G	A	4.108e^-5	0.632	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	25074289	3R_25074289_SNP [dm3] 3R_29248567_SNP [dm6]	G	A	4.119e^-5	0.632	INTRON SP1029
2L	8139753	2L_8139753_SNP [dm3] 2L_8139753_SNP [dm6]	C	G	4.156e^-5	0.632	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4646637	2L_4646637_SNP [dm3] 2L_4646637_SNP [dm6]	A	G	4.227e^-5	0.632	UPSTREAM CG43798 DOWNSTREAM CG15635 INTERGENIC
2L	2023752	2L_2023752_SNP [dm3] 2L_2023752_SNP [dm6]	G	A	4.230e^-5	0.632	UPSTREAM CG4238 INTRON CG4238
3L	4490138	3L_4490138_SNP [dm3] 3L_4490138_SNP [dm6]	T	G	4.236e^-5	0.632	INTRON CG13722
2L	11332370	2L_11332370_SNP [dm3] 2L_11332370_SNP [dm6]	T	A	4.272e^-5	0.632	INTRON CR44584
2R	18039412	2R_18039412_SNP [dm3] 2R_22151907_SNP [dm6]	G	A	4.307e^-5	0.632	INTRON a
X	16436840	X_16436840_SNP [dm3] X_16542807_SNP [dm6]	G	C	4.323e^-5	0.632	UTR_3_PRIME CG9902 DOWNSTREAM CG9902	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16436728	X_16436728_SNP [dm3] X_16542695_SNP [dm6]	T	C	4.323e^-5	0.632	UTR_3_PRIME CG9902 DOWNSTREAM CG9902
3R	24869880	3R_24869880_SNP [dm3] 3R_29044158_SNP [dm6]	T	G	4.338e^-5	0.632	INTRON Pkc98E
2L	10920754	2L_10920754_SNP [dm3] 2L_10920754_SNP [dm6]	G	A	4.364e^-5	0.632	INTRON dpr2
X	3094880	X_3094880_SNP [dm3] X_3200847_SNP [dm6]	G	C	4.373e^-5	0.632	INTRON dnc
2R	16599865	2R_16599865_SNP [dm3] 2R_20712360_SNP [dm6]	C	T	4.440e^-5	0.632	INTRON dpr
3R	8163343	3R_8163343_SNP [dm3] 3R_12337621_SNP [dm6]	G	T	4.511e^-5	0.632	INTRON CR44941
X	18439213	X_18439213_SNP [dm3] X_18545180_SNP [dm6]	A	G	4.524e^-5	0.632	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3852339	2L_3852339_SNP [dm3] 2L_3852339_SNP [dm6]	A	T	4.525e^-5	0.632	INTRON CR45451	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9573284	2R_9573284_SNP [dm3] 2R_13685779_SNP [dm6]	G	C	4.552e^-5	0.632	INTRON fas
X	16436799	X_16436799_SNP [dm3] X_16542766_SNP [dm6]	G	A	4.593e^-5	0.632	UTR_3_PRIME CG9902 DOWNSTREAM CG9902	TF binding site mE1_TFBS_sens
3R	25212437	3R_25212437_SNP [dm3] 3R_29386715_SNP [dm6]	C	T	4.622e^-5	0.632	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
X	16436847	X_16436847_SNP [dm3] X_16542814_SNP [dm6]	A	G	4.624e^-5	0.632	UTR_3_PRIME CG9902 DOWNSTREAM CG9902	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7100991	2L_7100991_SNP [dm3] 2L_7100991_SNP [dm6]	C	G	4.671e^-5	0.632	INTRON Pvf3
3L	2671692	3L_2671692_DEL [dm3] 3L_2671692_DEL [dm6]	AACTATATTATA...	A	4.718e^-5	0.632	UTR_3_PRIME Fife INTRON Fife
3L	6374677	3L_6374677_SNP [dm3] 3L_6381577_SNP [dm6]	C	G	4.726e^-5	0.632	INTERGENIC
3R	17178910	3R_17178910_SNP [dm3] 3R_21353188_SNP [dm6]	A	G	4.737e^-5	0.632	SYNONYMOUS_CODING mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3R	7379196	3R_7379196_INS [dm3] 3R_11553474_INS [dm6]	T	TAGCCACT	4.765e^-5	0.632	UPSTREAM CG14708 INTERGENIC
2L	19482909	2L_19482909_SNP [dm3] 2L_19482909_SNP [dm6]	C	T	4.765e^-5	0.632	UTR_3_PRIME CG10195
3L	14383267	3L_14383267_SNP [dm3] 3L_14390167_SNP [dm6]	A	C	4.789e^-5	0.632	INTERGENIC
2L	17086342	2L_17086342_SNP [dm3] 2L_17086342_SNP [dm6]	G	T	4.857e^-5	0.632	DOWNSTREAM CR43819 EXON CR43819
3R	16287741	3R_16287741_SNP [dm3] 3R_20462019_SNP [dm6]	C	T	4.866e^-5	0.632	INTRON Gfrl
2L	7444357	2L_7444357_SNP [dm3] 2L_7444357_SNP [dm6]	A	T	4.955e^-5	0.632	NON_SYNONYMOUS_CODING CG5973 DOWNSTREAM santa-maria
3R	25741519	3R_25741519_SNP [dm3] 3R_29915797_SNP [dm6]	C	G	4.985e^-5	0.632	INTRON trp	TF binding site mE1_TFBS_chinmo
3L	3840978	3L_3840978_SNP [dm3] 3L_3840978_SNP [dm6]	A	G	4.986e^-5	0.632	UTR_3_PRIME enc
3R	20564042	3R_20564042_SNP [dm3] 3R_24738320_SNP [dm6]	G	T	4.987e^-5	0.632	INTRON tok
3L	10784964	3L_10784964_SNP [dm3] 3L_10791864_SNP [dm6]	C	T	5.101e^-5	0.636	INTERGENIC
X	16942622	X_16942622_SNP [dm3] X_17048589_SNP [dm6]	C	A	5.102e^-5	0.636	INTRON CG45002
3L	10247589	3L_10247589_SNP [dm3] 3L_10254489_SNP [dm6]	A	G	5.119e^-5	0.636	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	5515722	X_5515722_SNP [dm3] X_5621689_SNP [dm6]	T	G	5.298e^-5	0.645	UPSTREAM l_1_G0045 DOWNSTREAM mir-3645 INTRON Mlc-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18537717	X_18537717_SNP [dm3] X_18643684_SNP [dm6]	C	G	5.304e^-5	0.645	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26120287	3R_26120287_SNP [dm3] 3R_30294565_SNP [dm6]	G	C	5.318e^-5	0.645	INTRON hdc
X	18542221	X_18542221_SNP [dm3] X_18648188_SNP [dm6]	A	T	5.418e^-5	0.645	UTR_5_PRIME CG6540 UPSTREAM Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	7119532	3L_7119532_SNP [dm3] 3L_7126432_SNP [dm6]	A	G	5.437e^-5	0.645	SYNONYMOUS_CODING BBS1 UPSTREAM msl-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17198001	3R_17198001_SNP [dm3] 3R_21372279_SNP [dm6]	T	C	5.442e^-5	0.645	UTR_3_PRIME mod_mdg4_ INTRON mod_mdg4_
2R	18724561	2R_18724561_SNP [dm3] 2R_22837038_SNP [dm6]	G	T	5.500e^-5	0.645	UPSTREAM CG9825 DOWNSTREAM CG12490 INTERGENIC
3R	9138459	3R_9138459_SNP [dm3] 3R_13312737_SNP [dm6]	A	G	5.503e^-5	0.645	UTR_3_PRIME CG32473 DOWNSTREAM CG44142
3L	820896	3L_820896_SNP [dm3] 3L_820896_SNP [dm6]	C	T	5.548e^-5	0.645	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13604566	3L_13604566_SNP [dm3] 3L_13611466_SNP [dm6]	G	A	5.564e^-5	0.645	INTRON bru-3
3L	11837451	3L_11837451_SNP [dm3] 3L_11844351_SNP [dm6]	T	A	5.594e^-5	0.645	INTERGENIC
2L	6450497	2L_6450497_SNP [dm3] 2L_6450497_SNP [dm6]	A	T	5.606e^-5	0.645	INTRON retm
3L	13350339	3L_13350339_SNP [dm3] 3L_13357239_SNP [dm6]	C	G	5.668e^-5	0.647	DOWNSTREAM Nplp2 INTERGENIC
2L	2391046	2L_2391046_SNP [dm3] 2L_2391046_SNP [dm6]	A	C	5.690e^-5	0.647	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	15089763	2L_15089763_SNP [dm3] 2L_15089763_SNP [dm6]	G	A	5.753e^-5	0.647	INTRON CG15270
3R	16379936	3R_16379936_SNP [dm3] 3R_20554214_SNP [dm6]	G	A	5.823e^-5	0.647	INTRON att-ORFA & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4994625	3L_4994625_SNP [dm3] 3L_4994625_SNP [dm6]	C	T	5.845e^-5	0.647	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4932630	3L_4932630_SNP [dm3] 3L_4932630_SNP [dm6]	T	A	5.855e^-5	0.647	INTERGENIC	regulatory region REDfly_CRMs
3R	5907868	3R_5907868_SNP [dm3] 3R_10082146_SNP [dm6]	G	A	5.924e^-5	0.647	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19493871	2L_19493871_DEL [dm3] 2L_19493871_DEL [dm6]	GCAAGCAG	G	5.971e^-5	0.647	UTR_5_PRIME swm UPSTREAM CG10189	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	18536094	X_18536094_SNP [dm3] X_18642061_SNP [dm6]	G	C	6.003e^-5	0.647	INTRON Rip11	TF binding site mE1_TFBS_chinmo
3R	18395402	3R_18395402_SNP [dm3] 3R_22569680_SNP [dm6]	A	T	6.010e^-5	0.647	UPSTREAM CG33110 INTERGENIC
2L	5840768	2L_5840768_SNP [dm3] 2L_5840768_SNP [dm6]	T	C	6.020e^-5	0.647	INTRON TrissinR
X	18552472	X_18552472_SNP [dm3] X_18658439_SNP [dm6]	G	A	6.082e^-5	0.647	SYNONYMOUS_CODING fu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14587680	3L_14587680_SNP [dm3] 3L_14594580_SNP [dm6]	A	G	6.159e^-5	0.647	INTRON HGTX
3R	17197470	3R_17197470_SNP [dm3] 3R_21371748_SNP [dm6]	C	A	6.196e^-5	0.647	NON_SYNONYMOUS_CODING mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_HSA
3R	26712500	3R_26712500_SNP [dm3] 3R_30886778_SNP [dm6]	C	T	6.212e^-5	0.647	SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad
X	18546246	X_18546246_SNP [dm3] X_18652213_SNP [dm6]	C	A	6.232e^-5	0.647	SYNONYMOUS_CODING Ing3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12832475	3L_12832475_SNP [dm3] 3L_12839375_SNP [dm6]	C	A	6.242e^-5	0.647	INTRON CG10960
2R	17953839	2R_17953839_SNP [dm3] 2R_22066334_SNP [dm6]	C	T	6.264e^-5	0.647	UPSTREAM Snp & 1 other INTRON Snp	TF binding site BDTNP1_TFBS_twi
3L	16875828	3L_16875828_SNP [dm3] 3L_16882728_SNP [dm6]	T	C	6.279e^-5	0.647	INTRON Lmpt
3R	9719389	3R_9719389_SNP [dm3] 3R_13893667_SNP [dm6]	A	C	6.510e^-5	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4123978	X_4123978_SNP [dm3] X_4229945_SNP [dm6]	G	T	6.708e^-5	0.684	INTERGENIC
2R	18726209	2R_18726209_SNP [dm3] 2R_22838686_SNP [dm6]	G	A	6.750e^-5	0.684	SYNONYMOUS_CODING CG9825	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19316000	3R_19316000_SNP [dm3] 3R_23490278_SNP [dm6]	G	C	6.970e^-5	0.697	INTERGENIC
2L	339800	2L_339800_SNP [dm3] 2L_339800_SNP [dm6]	A	G	6.972e^-5	0.697	INTRON Plc21C
X	18547405	X_18547405_SNP [dm3] X_18653372_SNP [dm6]	A	G	7.089e^-5	0.697	UPSTREAM Ing3 DOWNSTREAM CG6659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12797016	2R_12797016_SNP [dm3] 2R_16909511_SNP [dm6]	G	A	7.103e^-5	0.697	INTERGENIC
3L	13345882	3L_13345882_SNP [dm3] 3L_13352782_SNP [dm6]	C	T	7.113e^-5	0.697	INTRON CG17687
X	17663745	X_17663745_SNP [dm3] X_17769712_SNP [dm6]	G	T	7.170e^-5	0.697	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
X	17176694	X_17176694_SNP [dm3] X_17282661_SNP [dm6]	C	A	7.220e^-5	0.697	SYNONYMOUS_CODING CG8664 UTR_5_PRIME CG5445	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	10986873	3L_10986873_SNP [dm3] 3L_10993773_SNP [dm6]	G	A	7.273e^-5	0.697	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	821970	3L_821970_SNP [dm3] 3L_821970_SNP [dm6]	T	G	7.312e^-5	0.697	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12832895	3L_12832895_SNP [dm3] 3L_12839795_SNP [dm6]	A	T	7.358e^-5	0.697	INTRON CG10960
3L	5624954	3L_5624954_SNP [dm3] 3L_5631854_SNP [dm6]	G	A	7.382e^-5	0.697	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl
2R	10517491	2R_10517491_SNP [dm3] 2R_14629986_SNP [dm6]	T	C	7.502e^-5	0.697	SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6994720	X_6994720_DEL [dm3] X_7100687_DEL [dm6]	TTTGGGCCTCGCCTC...	T	7.522e^-5	0.697	INTRON CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18536874	X_18536874_SNP [dm3] X_18642841_SNP [dm6]	G	T	7.537e^-5	0.697	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16464310	2R_16464310_SNP [dm3] 2R_20576805_SNP [dm6]	C	G	7.554e^-5	0.697	INTRON qsm
2L	2390664	2L_2390664_DEL [dm3] 2L_2390664_DEL [dm6]	TATACAAGT	T	7.600e^-5	0.697	UTR_5_PRIME CG43750 UPSTREAM VGlut
2L	2390656	2L_2390656_SNP [dm3] 2L_2390656_SNP [dm6]	A	G	7.603e^-5	0.697	UTR_5_PRIME CG43750
3R	27732274	3R_27732274_SNP [dm3] 3R_31906552_SNP [dm6]	G	A	7.656e^-5	0.697	INTRON heph
2L	3489376	2L_3489376_DEL [dm3] 2L_3489376_DEL [dm6]	TT	T	7.658e^-5	0.697	INTRON CG15414
3R	21953937	3R_21953937_SNP [dm3] 3R_26128215_SNP [dm6]	C	T	7.658e^-5	0.697	UPSTREAM CG31324 DOWNSTREAM CG14556 INTRON CG31324
2L	10224900	2L_10224900_SNP [dm3] 2L_10224900_SNP [dm6]	A	G	7.669e^-5	0.697	DOWNSTREAM CG4908 INTRON CG5708	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16954828	X_16954828_SNP [dm3] X_17060795_SNP [dm6]	C	T	7.711e^-5	0.697	INTRON CG45002
3R	9719378	3R_9719378_SNP [dm3] 3R_13893656_SNP [dm6]	C	A	7.742e^-5	0.697	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5141495	3L_5141495_SNP [dm3] 3L_5148395_SNP [dm6]	G	A	7.804e^-5	0.697	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo
3L	821968	3L_821968_SNP [dm3] 3L_821968_SNP [dm6]	C	A	7.807e^-5	0.697	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20862978	3R_20862978_SNP [dm3] 3R_25037256_SNP [dm6]	C	A	8.000e^-5	0.699	SYNONYMOUS_CODING CG31115 INTRON CG6422
2L	4314192	2L_4314192_DEL [dm3] 2L_4314192_DEL [dm6]	AA	A	8.001e^-5	0.699	INTRON tutl
3R	17219552	3R_17219552_SNP [dm3] 3R_21393830_SNP [dm6]	C	T	8.131e^-5	0.699	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24659536	3R_24659536_SNP [dm3] 3R_28833814_SNP [dm6]	C	T	8.356e^-5	0.699	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	9724251	3R_9724251_SNP [dm3] 3R_13898529_SNP [dm6]	A	T	8.427e^-5	0.699	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	923475	2L_923475_SNP [dm3] 2L_923475_SNP [dm6]	A	G	8.452e^-5	0.699	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4994616	3L_4994616_SNP [dm3] 3L_4994616_SNP [dm6]	G	C	8.458e^-5	0.699	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	5637467	2L_5637467_SNP [dm3] 2L_5637467_SNP [dm6]	C	T	8.487e^-5	0.699	INTRON CG31646
3R	22985965	3R_22985965_SNP [dm3] 3R_27160243_SNP [dm6]	T	C	8.496e^-5	0.699	UPSTREAM CG5909 DOWNSTREAM grass INTERGENIC
2R	18726560	2R_18726560_SNP [dm3] 2R_22839037_SNP [dm6]	A	T	8.593e^-5	0.699	INTRON CG9825	TF binding site mE1_TFBS_cad
X	18544155	X_18544155_SNP [dm3] X_18650122_SNP [dm6]	C	G	8.603e^-5	0.699	DOWNSTREAM CG6540 & 1 other INTRON CG6617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6089317	3L_6089317_SNP [dm3] 3L_6096217_SNP [dm6]	G	A	8.642e^-5	0.699	SYNONYMOUS_CODING loj
3R	10615565	3R_10615565_SNP [dm3] 3R_14789843_SNP [dm6]	T	C	8.663e^-5	0.699	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7046218	2L_7046218_INS [dm3] 2L_7046218_INS [dm6]	C	CGC	8.713e^-5	0.699	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5624829	3L_5624829_SNP [dm3] 3L_5631729_SNP [dm6]	A	C	8.744e^-5	0.699	INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	17175631	X_17175631_SNP [dm3] X_17281598_SNP [dm6]	G	A	8.755e^-5	0.699	UTR_3_PRIME CG8664 UPSTREAM CG5445 DOWNSTREAM CG8664 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9134156	3R_9134156_SNP [dm3] 3R_13308434_SNP [dm6]	G	T	8.763e^-5	0.699	UPSTREAM CG32473 INTRON CG32473
2L	4658980	2L_4658980_SNP [dm3] 2L_4658980_SNP [dm6]	T	A	8.772e^-5	0.699	INTERGENIC
2L	8139751	2L_8139751_SNP [dm3] 2L_8139751_SNP [dm6]	A	C	8.773e^-5	0.699	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15363302	3R_15363302_SNP [dm3] 3R_19537580_SNP [dm6]	G	T	8.828e^-5	0.699	INTRON Dys
3R	17064857	3R_17064857_SNP [dm3] 3R_21239135_SNP [dm6]	G	A	8.905e^-5	0.699	INTERGENIC	regulatory region REDfly_CRMs
X	18552337	X_18552337_SNP [dm3] X_18658304_SNP [dm6]	G	C	8.965e^-5	0.699	SYNONYMOUS_CODING fu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18552595	X_18552595_SNP [dm3] X_18658562_SNP [dm6]	C	G	8.965e^-5	0.699	SYNONYMOUS_CODING fu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16980052	2R_16980052_SNP [dm3] 2R_21092547_SNP [dm6]	T	C	8.999e^-5	0.699	SYNONYMOUS_CODING CG34396
3R	11208658	3R_11208658_SNP [dm3] 3R_15382936_SNP [dm6]	C	T	9.024e^-5	0.699	UTR_5_PRIME h-cup UPSTREAM Rbp INTRON Rbp
3L	4947200	3L_4947200_SNP [dm3] 3L_4947200_SNP [dm6]	A	T	9.065e^-5	0.699	INTRON Con
2R	8872787	2R_8872787_SNP [dm3] 2R_12985282_SNP [dm6]	A	G	9.150e^-5	0.699	UPSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	14713663	2R_14713663_DEL [dm3] 2R_18826158_DEL [dm6]	TTGGTGT	T	9.170e^-5	0.699	UTR_5_PRIME CG15097 UPSTREAM CG15097
3L	12839316	3L_12839316_SNP [dm3] 3L_12846216_SNP [dm6]	T	G	9.194e^-5	0.699	INTRON CG10948
3L	10559405	3L_10559405_SNP [dm3] 3L_10566305_SNP [dm6]	G	A	9.221e^-5	0.699	INTRON A2bp1
X	18537529	X_18537529_DEL [dm3] X_18643496_DEL [dm6]	GTGTGTGTGTG...	G	9.241e^-5	0.699	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9330399	3L_9330399_SNP [dm3] 3L_9337299_SNP [dm6]	C	A	9.484e^-5	0.699	INTRON PGRP-LA
3L	10523025	3L_10523025_SNP [dm3] 3L_10529925_SNP [dm6]	A	G	9.499e^-5	0.699	INTRON A2bp1
X	16941490	X_16941490_SNP [dm3] X_17047457_SNP [dm6]	T	G	9.545e^-5	0.699	INTRON CG45002
3R	25803397	3R_25803397_SNP [dm3] 3R_29977675_SNP [dm6]	T	C	9.559e^-5	0.699	INTERGENIC
2L	4631052	2L_4631052_SNP [dm3] 2L_4631052_SNP [dm6]	A	T	9.586e^-5	0.699	INTERGENIC
3R	10615582	3R_10615582_SNP [dm3] 3R_14789860_SNP [dm6]	A	G	9.754e^-5	0.699	SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12491010	3L_12491010_SNP [dm3] 3L_12497910_SNP [dm6]	T	C	9.761e^-5	0.699	UPSTREAM CG10657 & 1 other DOWNSTREAM CG10638 INTERGENIC
3L	2666509	3L_2666509_SNP [dm3] 3L_2666509_SNP [dm6]	T	C	9.807e^-5	0.699	SYNONYMOUS_CODING Fife	TF binding site mE1_TFBS_chinmo
X	6786235	X_6786235_SNP [dm3] X_6892202_SNP [dm6]	C	T	9.847e^-5	0.699	INTERGENIC
2R	3571989	2R_3571989_SNP [dm3] 2R_7684484_SNP [dm6]	G	A	9.878e^-5	0.699	INTRON CG1399
3L	14587873	3L_14587873_SNP [dm3] 3L_14594773_SNP [dm6]	A	C	9.976e^-5	0.699	INTRON HGTX	TF binding site mE1_TFBS_cnc
2L	2390640	2L_2390640_SNP [dm3] 2L_2390640_SNP [dm6]	C	T	9.977e^-5	0.699	UTR_5_PRIME CG43750
3L	12622173	3L_12622173_SNP [dm3] 3L_12629073_SNP [dm6]	A	T	9.987e^-5	0.699	INTRON CR32111
2R	18051221	2R_18051221_SNP [dm3] 2R_22163716_SNP [dm6]	G	A	1.003e^-4	0.699	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
2R	18051228	2R_18051228_SNP [dm3] 2R_22163723_SNP [dm6]	A	T	1.003e^-4	0.699	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
3R	13984872	3R_13984872_SNP [dm3] 3R_18159150_SNP [dm6]	C	G	1.008e^-4	0.699	SYNONYMOUS_CODING CG14315 DOWNSTREAM CR45103 EXON CR45104
2L	4303642	2L_4303642_SNP [dm3] 2L_4303642_SNP [dm6]	T	C	1.010e^-4	0.699	INTRON tutl
3R	22937819	3R_22937819_SNP [dm3] 3R_27112097_SNP [dm6]	C	A	1.010e^-4	0.699	UTR_5_PRIME gb UPSTREAM CG5815 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18161365	2R_18161365_SNP [dm3] 2R_22273860_SNP [dm6]	T	C	1.011e^-4	0.699	INTRON dve	TF binding site mE1_TFBS_chinmo
3R	24660706	3R_24660706_SNP [dm3] 3R_28834984_SNP [dm6]	C	T	1.012e^-4	0.699	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3769565	2L_3769565_SNP [dm3] 2L_3769565_SNP [dm6]	C	G	1.017e^-4	0.699	DOWNSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24660529	3R_24660529_SNP [dm3] 3R_28834807_SNP [dm6]	G	A	1.018e^-4	0.699	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3L	14180203	3L_14180203_SNP [dm3] 3L_14187103_SNP [dm6]	G	C	1.018e^-4	0.699	SYNONYMOUS_CODING nan	TF binding site mE1_TFBS_cad
2L	6156253	2L_6156253_SNP [dm3] 2L_6156253_SNP [dm6]	G	T	1.024e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14501566	2L_14501566_SNP [dm3] 2L_14501566_SNP [dm6]	G	T	1.028e^-4	0.699	INTERGENIC
3R	27659544	3R_27659544_SNP [dm3] 3R_31833822_SNP [dm6]	G	C	1.037e^-4	0.699	SYNONYMOUS_CODING RhoGAP100F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14383338	3L_14383338_DEL [dm3] 3L_14390238_DEL [dm6]	CCATTAC	T	1.046e^-4	0.699	INTERGENIC
3L	15440165	3L_15440165_DEL [dm3] 3L_15447065_DEL [dm6]	TTATTG	AA	1.051e^-4	0.699	INTERGENIC
2L	6450480	2L_6450480_SNP [dm3] 2L_6450480_SNP [dm6]	C	A	1.053e^-4	0.699	INTRON retm
3R	5235908	3R_5235908_SNP [dm3] 3R_9410186_SNP [dm6]	A	T	1.053e^-4	0.699	UTR_5_PRIME betaTub85D DOWNSTREAM Task7
3L	822049	3L_822049_DEL [dm3] 3L_822049_DEL [dm6]	GATATCTG	AC	1.067e^-4	0.699	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	13194895	X_13194895_SNP [dm3] X_13300862_SNP [dm6]	G	A	1.070e^-4	0.699	DOWNSTREAM CG1622 INTRON CG1764
3L	14383255	3L_14383255_INS [dm3] 3L_14390155_INS [dm6]	A	AAAGA	1.077e^-4	0.699	INTERGENIC
X	18354713	X_18354713_SNP [dm3] X_18460680_SNP [dm6]	G	T	1.081e^-4	0.699	UPSTREAM CR43842 & 1 other INTRON CG32547
X	18535927	X_18535927_SNP [dm3] X_18641894_SNP [dm6]	C	T	1.087e^-4	0.699	INTRON Rip11	TF binding site mE1_TFBS_chinmo
2L	2390475	2L_2390475_SNP [dm3] 2L_2390475_SNP [dm6]	T	C	1.092e^-4	0.699	NON_SYNONYMOUS_CODING CG43750
3L	13346753	3L_13346753_SNP [dm3] 3L_13353653_SNP [dm6]	G	A	1.100e^-4	0.699	SYNONYMOUS_CODING CG17687
X	11183769	X_11183769_SNP [dm3] X_11289736_SNP [dm6]	G	A	1.109e^-4	0.699	INTRON CG44422
3R	9148701	3R_9148701_SNP [dm3] 3R_13322979_SNP [dm6]	A	T	1.113e^-4	0.699	INTERGENIC
3R	22956440	3R_22956440_SNP [dm3] 3R_27130718_SNP [dm6]	C	T	1.113e^-4	0.699	INTRON CG6051
3L	2077127	3L_2077127_SNP [dm3] 3L_2077127_SNP [dm6]	C	G	1.115e^-4	0.699	SYNONYMOUS_CODING sls INTRON sls
X	18405347	X_18405347_SNP [dm3] X_18511314_SNP [dm6]	A	G	1.118e^-4	0.699	INTRON Ggt-1
2R	18051222	2R_18051222_SNP [dm3] 2R_22163717_SNP [dm6]	A	T	1.119e^-4	0.699	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
3R	25521633	3R_25521633_SNP [dm3] 3R_29695911_SNP [dm6]	C	T	1.123e^-4	0.699	SYNONYMOUS_CODING dmrt99B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26559814	3R_26559814_SNP [dm3] 3R_30734092_SNP [dm6]	T	G	1.136e^-4	0.699	INTERGENIC
2R	18632916	2R_18632916_DEL [dm3] 2R_22745411_DEL [dm6]	GGATG	G	1.137e^-4	0.699	INTRON CG42260
2L	11299546	2L_11299546_SNP [dm3] 2L_11299546_SNP [dm6]	G	T	1.139e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19003351	2L_19003351_DEL [dm3] 2L_19003351_DEL [dm6]	GGGCATTCG	G	1.144e^-4	0.699	UPSTREAM CG31793 DOWNSTREAM CG31792 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26630161	3R_26630161_SNP [dm3] 3R_30804439_SNP [dm6]	C	T	1.152e^-4	0.699	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10352906	X_10352906_SNP [dm3] X_10458873_SNP [dm6]	A	T	1.154e^-4	0.699	NON_SYNONYMOUS_CODING Or9a
2L	17766075	2L_17766075_SNP [dm3] 2L_17766075_SNP [dm6]	T	C	1.161e^-4	0.699	INTRON CadN
2L	8530718	2L_8530718_SNP [dm3] 2L_8530718_SNP [dm6]	T	A	1.165e^-4	0.699	INTRON CG17834
2R	16976789	2R_16976789_SNP [dm3] 2R_21089284_SNP [dm6]	C	T	1.167e^-4	0.699	SYNONYMOUS_CODING Rbpn-5 DOWNSTREAM Treh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25522287	3R_25522287_SNP [dm3] 3R_29696565_SNP [dm6]	G	A	1.175e^-4	0.699	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	16318943	X_16318943_SNP [dm3] X_16424910_SNP [dm6]	C	G	1.177e^-4	0.699	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19225228	X_19225228_SNP [dm3] X_19331195_SNP [dm6]	A	G	1.179e^-4	0.699	INTRON nAChRalpha7
2R	6266657	2R_6266657_SNP [dm3] 2R_10379152_SNP [dm6]	C	T	1.186e^-4	0.699	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732
X	18547287	X_18547287_SNP [dm3] X_18653254_SNP [dm6]	T	C	1.195e^-4	0.699	UPSTREAM Ing3 DOWNSTREAM CG6659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3769855	2L_3769855_SNP [dm3] 2L_3769855_SNP [dm6]	G	A	1.203e^-4	0.699	DOWNSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25531674	3R_25531674_SNP [dm3] 3R_29705952_SNP [dm6]	A	G	1.204e^-4	0.699	INTERGENIC
3L	1586361	3L_1586361_SNP [dm3] 3L_1586361_SNP [dm6]	T	A	1.204e^-4	0.699	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	9338570	2L_9338570_SNP [dm3] 2L_9338570_SNP [dm6]	G	T	1.214e^-4	0.699	INTRON Eaat1
2L	3934266	2L_3934266_SNP [dm3] 2L_3934266_SNP [dm6]	G	C	1.227e^-4	0.699	INTRON fred
2L	3934267	2L_3934267_SNP [dm3] 2L_3934267_SNP [dm6]	C	G	1.227e^-4	0.699	INTRON fred
2R	16976917	2R_16976917_SNP [dm3] 2R_21089412_SNP [dm6]	C	T	1.228e^-4	0.699	DOWNSTREAM Treh INTRON Rbpn-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18051226	2R_18051226_INS [dm3] 2R_22163721_INS [dm6]	A	AATCATATA	1.234e^-4	0.699	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
3R	18395420	3R_18395420_SNP [dm3] 3R_22569698_SNP [dm6]	G	T	1.234e^-4	0.699	UPSTREAM CG33110 INTERGENIC
3L	10559869	3L_10559869_SNP [dm3] 3L_10566769_SNP [dm6]	C	A	1.235e^-4	0.699	INTRON A2bp1	TF binding site mE1_TFBS_inv
2L	11302051	2L_11302051_SNP [dm3] 2L_11302051_SNP [dm6]	G	A	1.235e^-4	0.699	INTERGENIC
2L	4229295	2L_4229295_SNP [dm3] 2L_4229295_SNP [dm6]	A	G	1.236e^-4	0.699	DOWNSTREAM RpL40 EXON CR44608
2R	7925073	2R_7925073_SNP [dm3] 2R_12037568_SNP [dm6]	G	A	1.240e^-4	0.699	UPSTREAM CG43191 INTRON 128up	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	10882909	2R_10882909_SNP [dm3] 2R_14995404_SNP [dm6]	A	T	1.244e^-4	0.699	DOWNSTREAM CR43830 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1904247	3L_1904247_SNP [dm3] 3L_1904247_SNP [dm6]	C	A	1.245e^-4	0.699	INTRON CG1887
3R	26713022	3R_26713022_SNP [dm3] 3R_30887300_SNP [dm6]	A	T	1.256e^-4	0.699	INTRON Sap-r
2L	16728725	2L_16728725_SNP [dm3] 2L_16728725_SNP [dm6]	G	A	1.259e^-4	0.699	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	8926946	3R_8926946_SNP [dm3] 3R_13101224_SNP [dm6]	A	G	1.264e^-4	0.699	INTRON timeout
X	18100417	X_18100417_SNP [dm3] X_18206384_SNP [dm6]	T	A	1.267e^-4	0.699	INTERGENIC
X	20840098	X_20840098_SNP [dm3] X_20969071_SNP [dm6]	C	T	1.277e^-4	0.699	INTERGENIC
2L	20470494	2L_20470494_SNP [dm3] 2L_20470494_SNP [dm6]	G	A	1.278e^-4	0.699	INTRON CR44980
2R	13179218	2R_13179218_SNP [dm3] 2R_17291713_SNP [dm6]	C	A	1.291e^-4	0.699	INTRON mbl
2L	3674118	2L_3674118_SNP [dm3] 2L_3674118_SNP [dm6]	T	C	1.291e^-4	0.699	INTRON CG34340
X	18536787	X_18536787_SNP [dm3] X_18642754_SNP [dm6]	C	T	1.292e^-4	0.699	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17580151	2L_17580151_INS [dm3] 2L_17580151_INS [dm6]	A	AATGACTATGGGT...	1.294e^-4	0.699	DOWNSTREAM CR45698 INTERGENIC
X	16436803	X_16436803_SNP [dm3] X_16542770_SNP [dm6]	C	A	1.298e^-4	0.699	UTR_3_PRIME CG9902 DOWNSTREAM CG9902	TF binding site mE1_TFBS_sens
2R	16124516	2R_16124516_SNP [dm3] 2R_20237011_SNP [dm6]	C	A	1.299e^-4	0.699	INTRON CG11099
2L	3991425	2L_3991425_SNP [dm3] 2L_3991425_SNP [dm6]	C	T	1.301e^-4	0.699	INTRON fred
X	1293974	X_1293974_SNP [dm3] X_1399941_SNP [dm6]	G	A	1.304e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16173257	2R_16173257_SNP [dm3] 2R_20285752_SNP [dm6]	A	G	1.305e^-4	0.699	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16728703	2L_16728703_SNP [dm3] 2L_16728703_SNP [dm6]	T	C	1.307e^-4	0.699	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	3749968	3R_3749968_SNP [dm3] 3R_7924246_SNP [dm6]	G	T	1.318e^-4	0.699	UTR_3_PRIME lds DOWNSTREAM dsx
3L	7265116	3L_7265116_SNP [dm3] 3L_7272016_SNP [dm6]	C	T	1.318e^-4	0.699	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
2L	4303641	2L_4303641_SNP [dm3] 2L_4303641_SNP [dm6]	T	A	1.320e^-4	0.699	INTRON tutl
3R	25522176	3R_25522176_SNP [dm3] 3R_29696454_SNP [dm6]	C	T	1.326e^-4	0.699	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17512026	2L_17512026_SNP [dm3] 2L_17512026_SNP [dm6]	T	C	1.331e^-4	0.699	SYNONYMOUS_CODING Dhc36C
3R	15311315	3R_15311315_SNP [dm3] 3R_19485593_SNP [dm6]	G	A	1.333e^-4	0.699	INTRON Dys
2L	19488366	2L_19488366_SNP [dm3] 2L_19488366_SNP [dm6]	A	T	1.334e^-4	0.699	SYNONYMOUS_CODING CG13083 DOWNSTREAM CG10194
2L	3772483	2L_3772483_SNP [dm3] 2L_3772483_SNP [dm6]	A	G	1.336e^-4	0.699	UTR_5_PRIME bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5899834	2L_5899834_SNP [dm3] 2L_5899834_SNP [dm6]	G	A	1.340e^-4	0.699	DOWNSTREAM CR44579 INTERGENIC
X	8516498	X_8516498_SNP [dm3] X_8622465_SNP [dm6]	T	A	1.342e^-4	0.699	INTERGENIC
2R	4799005	2R_4799005_SNP [dm3] 2R_8911500_SNP [dm6]	A	G	1.344e^-4	0.699	NON_SYNONYMOUS_CODING Pgi DOWNSTREAM CG30349	TF binding site mE1_TFBS_cad
2L	896873	2L_896873_SNP [dm3] 2L_896873_SNP [dm6]	G	T	1.344e^-4	0.699	DOWNSTREAM CR45348 INTERGENIC
3L	22580674	3L_22580674_SNP [dm3] 3L_22587574_SNP [dm6]	G	A	1.347e^-4	0.699	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10882877	2R_10882877_SNP [dm3] 2R_14995372_SNP [dm6]	G	A	1.351e^-4	0.699	DOWNSTREAM CR43830 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16976988	2R_16976988_SNP [dm3] 2R_21089483_SNP [dm6]	G	A	1.355e^-4	0.699	SYNONYMOUS_CODING Rbpn-5 DOWNSTREAM Treh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5260235	X_5260235_SNP [dm3] X_5366202_SNP [dm6]	G	A	1.359e^-4	0.699	INTRON SK
X	3335732	X_3335732_SNP [dm3] X_3441699_SNP [dm6]	A	T	1.359e^-4	0.699	INTRON CR44999 & 1 other
3L	13344708	3L_13344708_SNP [dm3] 3L_13351608_SNP [dm6]	T	G	1.362e^-4	0.699	SYNONYMOUS_CODING CG17687
3L	4913502	3L_4913502_SNP [dm3] 3L_4913502_SNP [dm6]	C	T	1.364e^-4	0.699	SYNONYMOUS_CODING Rh50
3L	8419413	3L_8419413_SNP [dm3] 3L_8426313_SNP [dm6]	A	G	1.366e^-4	0.699	INTRON Cbl
3R	18395419	3R_18395419_SNP [dm3] 3R_22569697_SNP [dm6]	A	C	1.367e^-4	0.699	UPSTREAM CG33110 INTERGENIC
2R	8872704	2R_8872704_SNP [dm3] 2R_12985199_SNP [dm6]	T	G	1.368e^-4	0.699	UPSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	7988029	3L_7988029_SNP [dm3] 3L_7994929_SNP [dm6]	A	T	1.372e^-4	0.699	INTRON nmo	TF binding site mE1_TFBS_cad
2L	5899842	2L_5899842_SNP [dm3] 2L_5899842_SNP [dm6]	G	A	1.373e^-4	0.699	DOWNSTREAM CR44579 INTERGENIC
2R	13032217	2R_13032217_SNP [dm3] 2R_17144712_SNP [dm6]	T	C	1.375e^-4	0.699	UPSTREAM tRNA:CR30234 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	18552617	X_18552617_SNP [dm3] X_18658584_SNP [dm6]	A	T	1.375e^-4	0.699	NON_SYNONYMOUS_CODING fu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26713320	3R_26713320_SNP [dm3] 3R_30887598_SNP [dm6]	A	T	1.375e^-4	0.699	INTRON Sap-r
X	18547264	X_18547264_SNP [dm3] X_18653231_SNP [dm6]	A	G	1.378e^-4	0.699	UPSTREAM Ing3 DOWNSTREAM CG6659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2390071	2L_2390071_SNP [dm3] 2L_2390071_SNP [dm6]	G	A	1.385e^-4	0.699	NON_SYNONYMOUS_CODING CG43750
3R	25287566	3R_25287566_SNP [dm3] 3R_29461844_SNP [dm6]	A	G	1.385e^-4	0.699	UTR_5_PRIME Ptp99A UPSTREAM Ptp99A INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
3L	9330403	3L_9330403_SNP [dm3] 3L_9337303_SNP [dm6]	T	G	1.388e^-4	0.699	INTRON PGRP-LA
2L	8531045	2L_8531045_SNP [dm3] 2L_8531045_SNP [dm6]	G	T	1.395e^-4	0.699	INTRON CG17834
2L	17165582	2L_17165582_SNP [dm3] 2L_17165582_SNP [dm6]	G	A	1.404e^-4	0.699	INTRON beat-IIIa & 1 other
2L	4670667	2L_4670667_SNP [dm3] 2L_4670667_SNP [dm6]	G	A	1.411e^-4	0.699	INTERGENIC
2L	13962683	2L_13962683_SNP [dm3] 2L_13962683_SNP [dm6]	A	T	1.412e^-4	0.699	UTR_3_PRIME NimA UPSTREAM NimB1
2L	7020097	2L_7020097_SNP [dm3] 2L_7020097_SNP [dm6]	A	G	1.416e^-4	0.699	INTRON ade3
2R	18051233	2R_18051233_INS [dm3] 2R_22163728_INS [dm6]	T	TATAGTATAGTAT...	1.420e^-4	0.699	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
3L	12464773	3L_12464773_SNP [dm3] 3L_12471673_SNP [dm6]	G	T	1.420e^-4	0.699	UPSTREAM CG10616 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
X	6123669	X_6123669_SNP [dm3] X_6229636_SNP [dm6]	G	T	1.421e^-4	0.699	SYNONYMOUS_CODING CG14446
X	8084714	X_8084714_SNP [dm3] X_8190681_SNP [dm6]	T	C	1.421e^-4	0.699	INTRON sdt
X	18536103	X_18536103_SNP [dm3] X_18642070_SNP [dm6]	G	A	1.431e^-4	0.699	INTRON Rip11	TF binding site mE1_TFBS_chinmo
X	5199392	X_5199392_SNP [dm3] X_5305359_SNP [dm6]	C	G	1.431e^-4	0.699	SYNONYMOUS_CODING CG3323 DOWNSTREAM CG17764 INTRON CG42749
2L	896919	2L_896919_SNP [dm3] 2L_896919_SNP [dm6]	T	C	1.435e^-4	0.699	DOWNSTREAM CR45348 INTERGENIC
3R	19577291	3R_19577291_SNP [dm3] 3R_23751569_SNP [dm6]	A	G	1.437e^-4	0.699	SYNONYMOUS_CODING RanBP3 DOWNSTREAM Hmgcr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9197440	3L_9197440_SNP [dm3] 3L_9204340_SNP [dm6]	G	A	1.439e^-4	0.699	SYNONYMOUS_CODING Slc45-1	TF binding site mE1_TFBS_inv
2R	16469039	2R_16469039_SNP [dm3] 2R_20581534_SNP [dm6]	T	C	1.442e^-4	0.699	INTRON qsm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	18544355	X_18544355_SNP [dm3] X_18650322_SNP [dm6]	T	C	1.442e^-4	0.699	UTR_5_PRIME CG6617 DOWNSTREAM CG6540 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	17541451	3R_17541451_SNP [dm3] 3R_21715729_SNP [dm6]	A	T	1.443e^-4	0.699	INTRON CG31176
X	18354639	X_18354639_SNP [dm3] X_18460606_SNP [dm6]	G	A	1.449e^-4	0.699	UPSTREAM CR43842 & 1 other INTRON CG32547
X	18535165	X_18535165_SNP [dm3] X_18641132_SNP [dm6]	C	T	1.454e^-4	0.699	INTRON Rip11
X	13194897	X_13194897_SNP [dm3] X_13300864_SNP [dm6]	T	C	1.454e^-4	0.699	DOWNSTREAM CG1622 INTRON CG1764
X	18354662	X_18354662_SNP [dm3] X_18460629_SNP [dm6]	T	A	1.459e^-4	0.699	UPSTREAM CR43842 & 1 other INTRON CG32547
3L	12838818	3L_12838818_SNP [dm3] 3L_12845718_SNP [dm6]	T	A	1.462e^-4	0.699	INTRON CG10948
2L	9971960	2L_9971960_SNP [dm3] 2L_9971960_SNP [dm6]	T	G	1.463e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25526966	3R_25526966_SNP [dm3] 3R_29701244_SNP [dm6]	T	G	1.465e^-4	0.699	INTERGENIC	enhancer mE1_CBP_Enhancers
X	18548088	X_18548088_SNP [dm3] X_18654055_SNP [dm6]	A	G	1.465e^-4	0.699	SYNONYMOUS_CODING CG6659 UPSTREAM Ing3	TF binding site mE1_TFBS_sens
2R	16951687	2R_16951687_SNP [dm3] 2R_21064182_SNP [dm6]	G	A	1.466e^-4	0.699	DOWNSTREAM Cht8 INTRON Cht12
2L	12468761	2L_12468761_SNP [dm3] 2L_12468761_SNP [dm6]	T	A	1.469e^-4	0.699	INTRON bun	TF binding site BDTNP1_TFBS_dl
3L	9104317	3L_9104317_SNP [dm3] 3L_9111217_SNP [dm6]	C	A	1.471e^-4	0.699	INTRON bol
3L	1582522	3L_1582522_INS [dm3] 3L_1582522_INS [dm6]	T	TATTCTCGATCT...	1.477e^-4	0.699	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7046995	2L_7046995_SNP [dm3] 2L_7046995_SNP [dm6]	C	T	1.477e^-4	0.699	SYNONYMOUS_CODING milt INTRON milt
2L	3826633	2L_3826633_SNP [dm3] 2L_3826633_SNP [dm6]	G	A	1.478e^-4	0.699	NON_SYNONYMOUS_CODING slp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17431645	X_17431645_SNP [dm3] X_17537612_SNP [dm6]	G	C	1.481e^-4	0.699	INTRON CG43658
3R	26713321	3R_26713321_SNP [dm3] 3R_30887599_SNP [dm6]	C	T	1.492e^-4	0.699	INTRON Sap-r
3R	14114997	3R_14114997_SNP [dm3] 3R_18289275_SNP [dm6]	T	A	1.492e^-4	0.699	UTR_3_PRIME l_3_05822 UPSTREAM CG7131
2L	6531939	2L_6531939_SNP [dm3] 2L_6531939_SNP [dm6]	C	A	1.494e^-4	0.699	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	14252433	2L_14252433_SNP [dm3] 2L_14252433_SNP [dm6]	G	A	1.495e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	13979408	2L_13979408_INS [dm3] 2L_13979408_INS [dm6]	A	AA	1.495e^-4	0.699	UTR_3_PRIME Cyp28a5 UPSTREAM NimC2
2L	3876627	2L_3876627_INS [dm3] 2L_3876627_INS [dm6]	A	AA	1.500e^-4	0.699	INTRON capu
3L	1242055	3L_1242055_SNP [dm3] 3L_1242055_SNP [dm6]	G	T	1.508e^-4	0.699	DOWNSTREAM CG9194 INTRON Klp61F
3R	25515784	3R_25515784_SNP [dm3] 3R_29690062_SNP [dm6]	A	G	1.514e^-4	0.699	UPSTREAM Obp99c INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	22580737	3L_22580737_SNP [dm3] 3L_22587637_SNP [dm6]	A	G	1.519e^-4	0.699	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2391047	2L_2391047_DEL [dm3] 2L_2391047_DEL [dm6]	TAT	T	1.526e^-4	0.699	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	18537051	X_18537051_SNP [dm3] X_18643018_SNP [dm6]	C	T	1.539e^-4	0.699	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18849269	3R_18849269_DEL [dm3] 3R_23023547_DEL [dm6]	TGGGCCGCTAAGCGC...	T	1.544e^-4	0.699	INTRON lmd	TF binding site BDTNP1_TFBS_twi
3R	9138277	3R_9138277_SNP [dm3] 3R_13312555_SNP [dm6]	C	T	1.546e^-4	0.699	NON_SYNONYMOUS_CODING CG32473 DOWNSTREAM CG44142
3R	18970469	3R_18970469_SNP [dm3] 3R_23144747_SNP [dm6]	G	A	1.547e^-4	0.699	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3L	22579473	3L_22579473_SNP [dm3] 3L_22586373_SNP [dm6]	G	T	1.555e^-4	0.699	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11168728	2L_11168728_SNP [dm3] 2L_11168728_SNP [dm6]	A	G	1.560e^-4	0.699	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	18051416	2R_18051416_SNP [dm3] 2R_22163911_SNP [dm6]	G	T	1.565e^-4	0.699	NON_SYNONYMOUS_CODING CG34206 INTRON a
3L	18694115	3L_18694115_SNP [dm3] 3L_18701015_SNP [dm6]	T	C	1.571e^-4	0.699	INTERGENIC
2R	10437677	2R_10437677_SNP [dm3] 2R_14550172_SNP [dm6]	G	A	1.579e^-4	0.699	INTRON ttv
3L	8159590	3L_8159590_SNP [dm3] 3L_8166490_SNP [dm6]	A	G	1.580e^-4	0.699	UPSTREAM CG13675 INTERGENIC
3L	7144100	3L_7144100_SNP [dm3] 3L_7151000_SNP [dm6]	A	C	1.581e^-4	0.699	INTRON corn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14064130	3L_14064130_DEL [dm3] 3L_14071030_DEL [dm6]	AA	A	1.581e^-4	0.699	UTR_3_PRIME CG32138 UPSTREAM Pex1 DOWNSTREAM CG32138
X	16318530	X_16318530_SNP [dm3] X_16424497_SNP [dm6]	G	T	1.582e^-4	0.699	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17226202	3R_17226202_SNP [dm3] 3R_21400480_SNP [dm6]	C	T	1.587e^-4	0.699	UPSTREAM CG6475 INTERGENIC
X	5820521	X_5820521_DEL [dm3] X_5926488_DEL [dm6]	TT	T	1.594e^-4	0.699	INTRON CG3726
2L	2390808	2L_2390808_SNP [dm3] 2L_2390808_SNP [dm6]	C	G	1.595e^-4	0.699	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
3L	11856369	3L_11856369_SNP [dm3] 3L_11863269_SNP [dm6]	C	T	1.598e^-4	0.699	UTR_5_PRIME CG44837 INTRON CG44837	TF binding site mE1_TFBS_cad
3R	9130820	3R_9130820_SNP [dm3] 3R_13305098_SNP [dm6]	G	A	1.603e^-4	0.699	INTRON CG32473	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3934342	2L_3934342_SNP [dm3] 2L_3934342_SNP [dm6]	G	A	1.606e^-4	0.699	INTRON fred
3L	7753629	3L_7753629_SNP [dm3] 3L_7760529_SNP [dm6]	T	C	1.608e^-4	0.699	UTR_5_PRIME Hn UPSTREAM Hn
2R	18151033	2R_18151033_SNP [dm3] 2R_22263528_SNP [dm6]	A	T	1.617e^-4	0.699	INTRON dve
X	11232526	X_11232526_SNP [dm3] X_11338493_SNP [dm6]	C	T	1.620e^-4	0.699	INTRON Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3R	14596605	3R_14596605_SNP [dm3] 3R_18770883_SNP [dm6]	G	T	1.621e^-4	0.699	INTRON CG7720
X	18549138	X_18549138_SNP [dm3] X_18655105_SNP [dm6]	C	G	1.627e^-4	0.699	NON_SYNONYMOUS_CODING CG6659	TF binding site mE1_TFBS_chinmo
X	20916509	X_20916509_SNP [dm3] X_21045482_SNP [dm6]	T	A	1.628e^-4	0.699	INTRON Cbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17178540	3R_17178540_SNP [dm3] 3R_21352818_SNP [dm6]	T	G	1.628e^-4	0.699	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
X	9501863	X_9501863_SNP [dm3] X_9607830_SNP [dm6]	G	A	1.629e^-4	0.699	SYNONYMOUS_CODING Aats-lys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	6308842	3L_6308842_SNP [dm3] 3L_6315742_SNP [dm6]	T	A	1.635e^-4	0.699	INTERGENIC
3L	14086536	3L_14086536_SNP [dm3] 3L_14093436_SNP [dm6]	A	G	1.636e^-4	0.699	INTERGENIC
3L	14104094	3L_14104094_SNP [dm3] 3L_14110994_SNP [dm6]	T	C	1.638e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16976918	2R_16976918_SNP [dm3] 2R_21089413_SNP [dm6]	A	G	1.639e^-4	0.699	DOWNSTREAM Treh INTRON Rbpn-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5511496	X_5511496_SNP [dm3] X_5617463_SNP [dm6]	T	C	1.639e^-4	0.699	SYNONYMOUS_CODING RhoGAP5A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7316297	3L_7316297_SNP [dm3] 3L_7323197_SNP [dm6]	A	G	1.645e^-4	0.699	SYNONYMOUS_CODING RhoGEF4 UPSTREAM Rint1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	20839859	X_20839859_INS [dm3] X_20968832_INS [dm6]	A	AA	1.649e^-4	0.699	INTERGENIC
3L	17262064	3L_17262064_SNP [dm3] 3L_17268964_SNP [dm6]	T	C	1.650e^-4	0.699	INTERGENIC
2L	2390401	2L_2390401_SNP [dm3] 2L_2390401_SNP [dm6]	C	T	1.651e^-4	0.699	NON_SYNONYMOUS_CODING CG43750
X	18551701	X_18551701_SNP [dm3] X_18657668_SNP [dm6]	G	T	1.653e^-4	0.699	UPSTREAM fu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9971952	2L_9971952_SNP [dm3] 2L_9971952_SNP [dm6]	A	G	1.663e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19039602	3R_19039602_SNP [dm3] 3R_23213880_SNP [dm6]	C	G	1.668e^-4	0.699	INTRON cnc	TF binding site mE1_TFBS_HSA
2L	11393900	2L_11393900_SNP [dm3] 2L_11393900_SNP [dm6]	G	C	1.680e^-4	0.699	INTERGENIC	regulatory region REDfly_CRMs
3L	12622172	3L_12622172_SNP [dm3] 3L_12629072_SNP [dm6]	A	T	1.685e^-4	0.699	INTRON CR32111
2L	5624895	2L_5624895_DEL [dm3] 2L_5624895_DEL [dm6]	TA	T	1.685e^-4	0.699	INTERGENIC
3R	26712822	3R_26712822_SNP [dm3] 3R_30887100_SNP [dm6]	T	G	1.691e^-4	0.699	INTRON Sap-r	TF binding site mE1_TFBS_cad
3L	3772770	3L_3772770_SNP [dm3] 3L_3772770_SNP [dm6]	C	A	1.692e^-4	0.699	INTRON CG32264
3R	18231485	3R_18231485_SNP [dm3] 3R_22405763_SNP [dm6]	T	A	1.694e^-4	0.699	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
3L	15763941	3L_15763941_SNP [dm3] 3L_15770841_SNP [dm6]	G	C	1.695e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9340505	2L_9340505_SNP [dm3] 2L_9340505_SNP [dm6]	C	T	1.703e^-4	0.699	INTRON Eaat1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18545007	X_18545007_SNP [dm3] X_18650974_SNP [dm6]	G	A	1.708e^-4	0.699	SYNONYMOUS_CODING Ing3 UPSTREAM CG6617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo
3L	4745319	3L_4745319_SNP [dm3] 3L_4745319_SNP [dm6]	A	T	1.714e^-4	0.699	DOWNSTREAM CR43882 INTRON RhoGEF64C
3L	1586621	3L_1586621_SNP [dm3] 3L_1586621_SNP [dm6]	A	G	1.721e^-4	0.699	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	2737879	3L_2737879_SNP [dm3] 3L_2737879_SNP [dm6]	C	A	1.729e^-4	0.699	INTRON Mrtf
3R	9130949	3R_9130949_SNP [dm3] 3R_13305227_SNP [dm6]	G	A	1.730e^-4	0.699	INTRON CG32473	TF binding site mE1_TFBS_Trl
3L	4745352	3L_4745352_SNP [dm3] 3L_4745352_SNP [dm6]	C	T	1.732e^-4	0.699	DOWNSTREAM CR43882 INTRON RhoGEF64C
2L	9340192	2L_9340192_SNP [dm3] 2L_9340192_SNP [dm6]	T	C	1.744e^-4	0.699	SYNONYMOUS_CODING Eaat1	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	9971961	2L_9971961_SNP [dm3] 2L_9971961_SNP [dm6]	G	A	1.752e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16269681	2R_16269681_SNP [dm3] 2R_20382176_SNP [dm6]	C	T	1.755e^-4	0.699	INTERGENIC
3L	18565200	3L_18565200_SNP [dm3] 3L_18572100_SNP [dm6]	A	C	1.755e^-4	0.699	INTRON AstC-R1
X	18545025	X_18545025_SNP [dm3] X_18650992_SNP [dm6]	G	A	1.758e^-4	0.699	SYNONYMOUS_CODING Ing3 UPSTREAM CG6617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo
2L	17765811	2L_17765811_SNP [dm3] 2L_17765811_SNP [dm6]	T	G	1.759e^-4	0.699	INTRON CadN
3R	18037736	3R_18037736_SNP [dm3] 3R_22212014_SNP [dm6]	C	A	1.766e^-4	0.699	UTR_5_PRIME Gld2 UPSTREAM Gld2 INTRON SKIP	TF binding site mE1_TFBS_cad
3L	11334255	3L_11334255_SNP [dm3] 3L_11341155_SNP [dm6]	T	A	1.772e^-4	0.699	UPSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26535624	3R_26535624_SNP [dm3] 3R_30709902_SNP [dm6]	C	A	1.774e^-4	0.699	INTERGENIC
3L	9104323	3L_9104323_SNP [dm3] 3L_9111223_SNP [dm6]	A	T	1.775e^-4	0.699	INTRON bol
2L	5502681	2L_5502681_INS [dm3] 2L_5502681_INS [dm6]	G	TCC	1.777e^-4	0.699	INTERGENIC
2L	5502684	2L_5502684_SNP [dm3] 2L_5502684_SNP [dm6]	G	C	1.777e^-4	0.699	INTERGENIC
3R	8926912	3R_8926912_SNP [dm3] 3R_13101190_SNP [dm6]	A	C	1.784e^-4	0.699	INTRON timeout
X	18540327	X_18540327_SNP [dm3] X_18646294_SNP [dm6]	G	A	1.784e^-4	0.699	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9146440	3R_9146440_SNP [dm3] 3R_13320718_SNP [dm6]	C	A	1.784e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6465686	3L_6465686_SNP [dm3] 3L_6472586_SNP [dm6]	T	G	1.786e^-4	0.699	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18536651	X_18536651_SNP [dm3] X_18642618_SNP [dm6]	C	A	1.787e^-4	0.699	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4956723	3L_4956723_SNP [dm3] 3L_4956723_SNP [dm6]	T	C	1.795e^-4	0.699	SYNONYMOUS_CODING Con
3R	17226161	3R_17226161_SNP [dm3] 3R_21400439_SNP [dm6]	T	C	1.799e^-4	0.699	UPSTREAM CG6475 INTERGENIC
2L	19013856	2L_19013856_SNP [dm3] 2L_19013856_SNP [dm6]	T	G	1.807e^-4	0.699	INTERGENIC
3R	9675733	3R_9675733_SNP [dm3] 3R_13850011_SNP [dm6]	T	A	1.807e^-4	0.699	INTERGENIC
X	482577	X_482577_SNP [dm3] X_588544_SNP [dm6]	T	C	1.811e^-4	0.699	INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4751809	2R_4751809_SNP [dm3] 2R_8864304_SNP [dm6]	A	G	1.812e^-4	0.699	INTRON RyR
3R	23993819	3R_23993819_SNP [dm3] 3R_28168097_SNP [dm6]	A	G	1.819e^-4	0.699	INTRON CG34354
X	19325928	X_19325928_SNP [dm3] X_19431895_SNP [dm6]	A	T	1.826e^-4	0.699	INTRON kek5	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	7795653	3R_7795653_SNP [dm3] 3R_11969931_SNP [dm6]	C	G	1.828e^-4	0.699	INTRON GC1
3L	11619541	3L_11619541_SNP [dm3] 3L_11626441_SNP [dm6]	T	A	1.828e^-4	0.699	UTR_5_PRIME PCID2 UPSTREAM CG6083	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4681299	2L_4681299_SNP [dm3] 2L_4681299_SNP [dm6]	C	G	1.830e^-4	0.699	INTERGENIC
2L	10920755	2L_10920755_SNP [dm3] 2L_10920755_SNP [dm6]	G	C	1.841e^-4	0.699	INTRON dpr2
3L	1999980	3L_1999980_SNP [dm3] 3L_1999980_SNP [dm6]	A	C	1.845e^-4	0.699	INTERGENIC
3R	7471590	3R_7471590_SNP [dm3] 3R_11645868_SNP [dm6]	T	G	1.849e^-4	0.699	INTRON Csk
2L	6737526	2L_6737526_SNP [dm3] 2L_6737526_SNP [dm6]	G	T	1.853e^-4	0.699	SYNONYMOUS_CODING TTLL3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17176447	X_17176447_SNP [dm3] X_17282414_SNP [dm6]	C	A	1.855e^-4	0.699	UPSTREAM CG5445 INTRON CG8664	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	18537078	X_18537078_SNP [dm3] X_18643045_SNP [dm6]	C	A	1.860e^-4	0.699	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9161330	2R_9161330_INS [dm3] 2R_13273825_INS [dm6]	T	TC	1.864e^-4	0.699	INTRON Dh31-R	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14383348	3L_14383348_DEL [dm3] 3L_14390248_DEL [dm6]	TTTCGC	T	1.865e^-4	0.699	INTERGENIC
3R	18231449	3R_18231449_SNP [dm3] 3R_22405727_SNP [dm6]	G	A	1.865e^-4	0.699	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
3L	14387451	3L_14387451_SNP [dm3] 3L_14394351_SNP [dm6]	G	A	1.866e^-4	0.699	INTERGENIC
2L	9409739	2L_9409739_SNP [dm3] 2L_9409739_SNP [dm6]	G	A	1.869e^-4	0.699	INTRON Shawl
X	18546213	X_18546213_SNP [dm3] X_18652180_SNP [dm6]	G	A	1.880e^-4	0.699	SYNONYMOUS_CODING Ing3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11299545	2L_11299545_SNP [dm3] 2L_11299545_SNP [dm6]	T	A	1.882e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8779393	X_8779393_SNP [dm3] X_8885360_SNP [dm6]	G	T	1.887e^-4	0.699	INTRON Moe
2L	16722943	2L_16722943_SNP [dm3] 2L_16722943_SNP [dm6]	A	G	1.888e^-4	0.699	UTR_3_PRIME VhaSFD DOWNSTREAM VhaSFD & 1 other
X	5515741	X_5515741_SNP [dm3] X_5621708_SNP [dm6]	T	C	1.888e^-4	0.699	UPSTREAM l_1_G0045 DOWNSTREAM mir-3645 INTRON Mlc-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18534795	X_18534795_SNP [dm3] X_18640762_SNP [dm6]	G	A	1.891e^-4	0.699	INTRON Rip11
3L	6021653	3L_6021653_SNP [dm3] 3L_6028553_SNP [dm6]	T	C	1.894e^-4	0.699	INTERGENIC
3R	19078033	3R_19078033_SNP [dm3] 3R_23252311_SNP [dm6]	G	T	1.894e^-4	0.699	SYNONYMOUS_CODING EloA START_GAINED EloA UTR_5_PRIME EloA UPSTREAM CG4449	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18545001	X_18545001_SNP [dm3] X_18650968_SNP [dm6]	G	A	1.897e^-4	0.699	SYNONYMOUS_CODING Ing3 UPSTREAM CG6617	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo
3R	17600390	3R_17600390_SNP [dm3] 3R_21774668_SNP [dm6]	A	G	1.902e^-4	0.699	SYNONYMOUS_CODING GABA-B-R2	TF binding site mE1_TFBS_sens
3L	14075607	3L_14075607_SNP [dm3] 3L_14082507_SNP [dm6]	C	T	1.903e^-4	0.699	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15257577	2R_15257577_SNP [dm3] 2R_19370072_SNP [dm6]	G	A	1.905e^-4	0.699	SYNONYMOUS_CODING CG9416
3L	5342339	3L_5342339_SNP [dm3] 3L_5349239_SNP [dm6]	G	T	1.909e^-4	0.699	INTRON lama
3R	7047279	3R_7047279_SNP [dm3] 3R_11221557_SNP [dm6]	C	A	1.911e^-4	0.699	UTR_5_PRIME CG6693 UPSTREAM RpL3 & 2 others DOWNSTREAM CR31144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	23993806	3R_23993806_SNP [dm3] 3R_28168084_SNP [dm6]	C	T	1.912e^-4	0.699	INTRON CG34354
3R	16379965	3R_16379965_SNP [dm3] 3R_20554243_SNP [dm6]	G	C	1.915e^-4	0.699	INTRON att-ORFA & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9339890	2L_9339890_SNP [dm3] 2L_9339890_SNP [dm6]	T	C	1.930e^-4	0.699	SYNONYMOUS_CODING Eaat1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	18551493	X_18551493_SNP [dm3] X_18657460_SNP [dm6]	T	A	1.930e^-4	0.699	UPSTREAM fu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	13248421	X_13248421_SNP [dm3] X_13354388_SNP [dm6]	T	A	1.935e^-4	0.699	INTERGENIC
2L	9971963	2L_9971963_SNP [dm3] 2L_9971963_SNP [dm6]	T	G	1.941e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19445486	X_19445486_SNP [dm3] X_19551453_SNP [dm6]	G	A	1.941e^-4	0.699	UPSTREAM mir-973 & 1 other DOWNSTREAM mir-972 INTERGENIC
3L	14058013	3L_14058013_SNP [dm3] 3L_14064913_SNP [dm6]	C	T	1.942e^-4	0.699	INTRON CG32138
3R	9151178	3R_9151178_SNP [dm3] 3R_13325456_SNP [dm6]	A	T	1.946e^-4	0.699	INTERGENIC
3L	2903605	3L_2903605_SNP [dm3] 3L_2903605_SNP [dm6]	T	G	1.949e^-4	0.699	INTRON Shab
X	16436243	X_16436243_SNP [dm3] X_16542210_SNP [dm6]	G	C	1.950e^-4	0.699	UTR_3_PRIME CG9902
2L	15769864	2L_15769864_SNP [dm3] 2L_15769864_SNP [dm6]	C	T	1.951e^-4	0.699	SYNONYMOUS_CODING Ku80	TF binding site mE1_TFBS_HSA
2L	7046162	2L_7046162_SNP [dm3] 2L_7046162_SNP [dm6]	A	T	1.952e^-4	0.699	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22436025	3R_22436025_SNP [dm3] 3R_26610303_SNP [dm6]	A	G	1.954e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15274388	2R_15274388_SNP [dm3] 2R_19386883_SNP [dm6]	T	A	1.958e^-4	0.699	SYNONYMOUS_CODING CG10081
3L	13607516	3L_13607516_SNP [dm3] 3L_13614416_SNP [dm6]	C	G	1.961e^-4	0.699	INTRON bru-3
3R	5469842	3R_5469842_SNP [dm3] 3R_9644120_SNP [dm6]	G	C	1.973e^-4	0.699	DOWNSTREAM Fst INTRON Dh44	TF binding site BDTNP1_TFBS_twi
3R	25522263	3R_25522263_SNP [dm3] 3R_29696541_SNP [dm6]	A	G	1.982e^-4	0.699	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17146818	3L_17146818_SNP [dm3] 3L_17153718_SNP [dm6]	G	C	1.982e^-4	0.699	INTRON Rbp6
X	8961972	X_8961972_SNP [dm3] X_9067939_SNP [dm6]	G	A	1.983e^-4	0.699	UTR_5_PRIME CG15365
3R	18053344	3R_18053344_SNP [dm3] 3R_22227622_SNP [dm6]	T	C	1.985e^-4	0.699	INTRON SKIP
2L	3933726	2L_3933726_SNP [dm3] 2L_3933726_SNP [dm6]	C	T	1.987e^-4	0.699	INTRON fred
2L	3933729	2L_3933729_SNP [dm3] 2L_3933729_SNP [dm6]	A	C	1.987e^-4	0.699	INTRON fred
3L	4994613	3L_4994613_SNP [dm3] 3L_4994613_SNP [dm6]	C	T	1.989e^-4	0.699	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	11619835	3L_11619835_SNP [dm3] 3L_11626735_SNP [dm6]	T	G	1.997e^-4	0.699	NON_SYNONYMOUS_CODING PCID2 UPSTREAM CG6083	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	4657135	2L_4657135_SNP [dm3] 2L_4657135_SNP [dm6]	T	C	1.998e^-4	0.699	INTERGENIC
2L	3768435	2L_3768435_SNP [dm3] 2L_3768435_SNP [dm6]	C	A	1.998e^-4	0.699	UTR_3_PRIME CG43707 DOWNSTREAM mir-1004
3R	22949636	3R_22949636_SNP [dm3] 3R_27123914_SNP [dm6]	G	A	2.002e^-4	0.699	SYNONYMOUS_CODING CG6059 DOWNSTREAM CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17926512	2R_17926512_INS [dm3] 2R_22039007_INS [dm6]	T	TT	2.006e^-4	0.699	INTRON CG34370
3R	25717033	3R_25717033_SNP [dm3] 3R_29891311_SNP [dm6]	G	C	2.012e^-4	0.699	INTRON CG31038
2L	896915	2L_896915_SNP [dm3] 2L_896915_SNP [dm6]	T	A	2.027e^-4	0.699	DOWNSTREAM CR45348 INTERGENIC
3L	22579450	3L_22579450_SNP [dm3] 3L_22586350_SNP [dm6]	G	T	2.029e^-4	0.699	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16976880	2R_16976880_SNP [dm3] 2R_21089375_SNP [dm6]	C	A	2.037e^-4	0.699	DOWNSTREAM Treh INTRON Rbpn-5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18541368	X_18541368_SNP [dm3] X_18647335_SNP [dm6]	A	T	2.044e^-4	0.699	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	16436246	X_16436246_SNP [dm3] X_16542213_SNP [dm6]	G	T	2.052e^-4	0.699	UTR_3_PRIME CG9902
2L	6910100	2L_6910100_SNP [dm3] 2L_6910100_SNP [dm6]	T	C	2.057e^-4	0.699	SYNONYMOUS_CODING Rat1 DOWNSTREAM Wee1	TF binding site mE1_TFBS_sens
3R	5918442	3R_5918442_DEL [dm3] 3R_10092720_DEL [dm6]	ACGCTAATAAT...	A	2.058e^-4	0.699	INTERGENIC
3L	4994618	3L_4994618_SNP [dm3] 3L_4994618_SNP [dm6]	G	A	2.058e^-4	0.699	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	17534515	3R_17534515_SNP [dm3] 3R_21708793_SNP [dm6]	C	T	2.059e^-4	0.699	INTRON CG31176
3R	7006095	3R_7006095_DEL [dm3] 3R_11180373_DEL [dm6]	AGAGGAC	T	2.062e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17113608	X_17113608_SNP [dm3] X_17219575_SNP [dm6]	G	T	2.071e^-4	0.699	UTR_3_PRIME CG12998 DOWNSTREAM CG12998
3L	4935008	3L_4935008_SNP [dm3] 3L_4935008_SNP [dm6]	T	C	2.073e^-4	0.699	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15767621	2L_15767621_SNP [dm3] 2L_15767621_SNP [dm6]	G	T	2.073e^-4	0.699	NON_SYNONYMOUS_CODING wek	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
X	18537076	X_18537076_SNP [dm3] X_18643043_SNP [dm6]	C	T	2.080e^-4	0.699	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5401608	X_5401608_SNP [dm3] X_5507575_SNP [dm6]	A	T	2.082e^-4	0.699	DOWNSTREAM CR45519 INTERGENIC	TF binding site mE1_TFBS_HSA
X	5515725	X_5515725_SNP [dm3] X_5621692_SNP [dm6]	A	T	2.083e^-4	0.699	UPSTREAM l_1_G0045 DOWNSTREAM mir-3645 INTRON Mlc-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26712928	3R_26712928_SNP [dm3] 3R_30887206_SNP [dm6]	C	G	2.085e^-4	0.699	INTRON Sap-r	TF binding site mE1_TFBS_cad
2L	2390137	2L_2390137_SNP [dm3] 2L_2390137_SNP [dm6]	A	G	2.089e^-4	0.699	SYNONYMOUS_CODING CG43750
2L	16728711	2L_16728711_SNP [dm3] 2L_16728711_SNP [dm6]	T	G	2.093e^-4	0.699	UPSTREAM VhaSFD EXON CR43671	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	3581285	3L_3581285_SNP [dm3] 3L_3581285_SNP [dm6]	C	G	2.095e^-4	0.699	INTRON Eip63E
3L	2048509	3L_2048509_SNP [dm3] 3L_2048509_SNP [dm6]	C	T	2.095e^-4	0.699	SYNONYMOUS_CODING sls
2L	9432560	2L_9432560_SNP [dm3] 2L_9432560_SNP [dm6]	A	G	2.098e^-4	0.699	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18822982	3L_18822982_SNP [dm3] 3L_18829882_SNP [dm6]	T	C	2.099e^-4	0.699	SYNONYMOUS_CODING Indy	TF binding site mE1_TFBS_cad
3R	26713238	3R_26713238_SNP [dm3] 3R_30887516_SNP [dm6]	A	C	2.102e^-4	0.699	INTRON Sap-r
2L	4017060	2L_4017060_SNP [dm3] 2L_4017060_SNP [dm6]	T	C	2.106e^-4	0.699	INTERGENIC
3R	16057660	3R_16057660_SNP [dm3] 3R_20231938_SNP [dm6]	G	T	2.112e^-4	0.699	INTRON Nlg4
3L	822074	3L_822074_SNP [dm3] 3L_822074_SNP [dm6]	A	T	2.112e^-4	0.699	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13632457	3L_13632457_SNP [dm3] 3L_13639357_SNP [dm6]	T	C	2.113e^-4	0.699	INTRON bru-3
3L	4947774	3L_4947774_SNP [dm3] 3L_4947774_SNP [dm6]	T	G	2.121e^-4	0.701	INTRON Con
3L	6107501	3L_6107501_SNP [dm3] 3L_6114401_SNP [dm6]	A	T	2.130e^-4	0.702	INTRON Ets65A
2L	15274780	2L_15274780_SNP [dm3] 2L_15274780_SNP [dm6]	T	C	2.139e^-4	0.702	SYNONYMOUS_CODING UK114	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8512976	3R_8512976_SNP [dm3] 3R_12687254_SNP [dm6]	A	T	2.140e^-4	0.702	INTRON kar
3L	9391173	3L_9391173_DEL [dm3] 3L_9398073_DEL [dm6]	ATGTTG	A	2.145e^-4	0.702	INTRON CG4080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
X	18998674	X_18998674_SNP [dm3] X_19104641_SNP [dm6]	G	C	2.148e^-4	0.702	INTERGENIC
3L	15163605	3L_15163605_SNP [dm3] 3L_15170505_SNP [dm6]	C	A	2.148e^-4	0.702	INTERGENIC
3L	10561088	3L_10561088_SNP [dm3] 3L_10567988_SNP [dm6]	T	C	2.151e^-4	0.702	INTRON A2bp1
3L	11838300	3L_11838300_SNP [dm3] 3L_11845200_SNP [dm6]	A	G	2.161e^-4	0.704	INTERGENIC
3L	14610341	3L_14610341_SNP [dm3] 3L_14617241_SNP [dm6]	A	T	2.164e^-4	0.704	INTRON shd
3R	11107410	3R_11107410_SNP [dm3] 3R_15281688_SNP [dm6]	A	G	2.176e^-4	0.706	UTR_5_PRIME Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12831733	3L_12831733_SNP [dm3] 3L_12838633_SNP [dm6]	C	T	2.183e^-4	0.707	INTRON CG10960
3L	4482170	3L_4482170_SNP [dm3] 3L_4482170_SNP [dm6]	T	A	2.201e^-4	0.712	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
3L	14086513	3L_14086513_INS [dm3] 3L_14093413_INS [dm6]	A	ATTCGT	2.210e^-4	0.713	INTERGENIC
2L	11168659	2L_11168659_DEL [dm3] 2L_11168659_DEL [dm6]	AC	A	2.221e^-4	0.715	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26532020	3R_26532020_DEL [dm3] 3R_30706298_DEL [dm6]	CTCATTC	C	2.224e^-4	0.715	UPSTREAM CG31010 INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	4448003	3L_4448003_SNP [dm3] 3L_4448003_SNP [dm6]	C	T	2.232e^-4	0.716	UTR_3_PRIME CG12607
X	18544660	X_18544660_SNP [dm3] X_18650627_SNP [dm6]	T	A	2.233e^-4	0.716	UPSTREAM CG6617 DOWNSTREAM Ing3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	25522239	3R_25522239_SNP [dm3] 3R_29696517_SNP [dm6]	T	C	2.242e^-4	0.717	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25320215	3R_25320215_SNP [dm3] 3R_29494493_SNP [dm6]	A	G	2.254e^-4	0.717	UPSTREAM CG2310 & 1 other DOWNSTREAM Diedel INTERGENIC
X	18541370	X_18541370_SNP [dm3] X_18647337_SNP [dm6]	A	T	2.268e^-4	0.717	UTR_5_PRIME Rip11 UPSTREAM CG6540	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	19224920	X_19224920_SNP [dm3] X_19330887_SNP [dm6]	C	G	2.272e^-4	0.717	INTRON nAChRalpha7
2L	3473051	2L_3473051_SNP [dm3] 2L_3473051_SNP [dm6]	T	C	2.273e^-4	0.717	SYNONYMOUS_CODING pgant4 DOWNSTREAM CG31776	TF binding site BDTNP1_TFBS_prd
3L	16412239	3L_16412239_SNP [dm3] 3L_16419139_SNP [dm6]	T	C	2.278e^-4	0.717	SYNONYMOUS_CODING Aats-tyr UPSTREAM CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	4990086	2L_4990086_SNP [dm3] 2L_4990086_SNP [dm6]	A	C	2.286e^-4	0.717	INTRON CG34126	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14390612	2L_14390612_SNP [dm3] 2L_14390612_SNP [dm6]	G	A	2.293e^-4	0.717	DOWNSTREAM elB INTERGENIC
X	910485	X_910485_SNP [dm3] X_1016452_SNP [dm6]	A	C	2.295e^-4	0.717	INTRON su_w[a]_ & 1 other
2L	11246328	2L_11246328_DEL [dm3] 2L_11246328_DEL [dm6]	TTAT	T	2.299e^-4	0.717	INTRON ab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14385358	3L_14385358_DEL [dm3] 3L_14392258_DEL [dm6]	TTGAAGTTTATTGCGGCTGG...	T	2.302e^-4	0.717	INTERGENIC
3R	14046157	3R_14046157_SNP [dm3] 3R_18220435_SNP [dm6]	A	T	2.307e^-4	0.717	UPSTREAM CG7988 & 1 other INTRON CG7183	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23272590	3R_23272590_DEL [dm3] 3R_27446868_DEL [dm6]	CTTAGTAATTACGTTC...	C	2.309e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	17197321	3R_17197321_SNP [dm3] 3R_21371599_SNP [dm6]	A	G	2.318e^-4	0.717	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	16797644	3L_16797644_SNP [dm3] 3L_16804544_SNP [dm6]	T	G	2.331e^-4	0.717	UPSTREAM nudC INTRON CG9674	TF binding site mE1_TFBS_cad
3R	8927428	3R_8927428_SNP [dm3] 3R_13101706_SNP [dm6]	A	G	2.343e^-4	0.717	INTRON timeout
2R	16934529	2R_16934529_SNP [dm3] 2R_21047024_SNP [dm6]	A	T	2.347e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10559328	3L_10559328_SNP [dm3] 3L_10566228_SNP [dm6]	T	A	2.349e^-4	0.717	INTRON A2bp1
3R	21505716	3R_21505716_SNP [dm3] 3R_25679994_SNP [dm6]	G	T	2.358e^-4	0.717	SYNONYMOUS_CODING CG4743 UPSTREAM CG5028 DOWNSTREAM CG5039	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18884639	2L_18884639_SNP [dm3] 2L_18884639_SNP [dm6]	A	T	2.360e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	22101094	3R_22101094_SNP [dm3] 3R_26275372_SNP [dm6]	G	C	2.363e^-4	0.717	UTR_3_PRIME CG6154 DOWNSTREAM CG6154
3L	14383289	3L_14383289_SNP [dm3] 3L_14390189_SNP [dm6]	G	T	2.366e^-4	0.717	INTERGENIC
2L	11375503	2L_11375503_SNP [dm3] 2L_11375503_SNP [dm6]	A	G	2.383e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	19011982	3L_19011982_DEL [dm3] 3L_19018882_DEL [dm6]	AGTAGATGTCACTTATGAAG...	A	2.389e^-4	0.717	INTRON nkd
X	12592593	X_12592593_SNP [dm3] X_12698560_SNP [dm6]	T	G	2.399e^-4	0.717	INTRON Smr	TF binding site BDTNP1_TFBS_dl
X	19224910	X_19224910_SNP [dm3] X_19330877_SNP [dm6]	T	G	2.408e^-4	0.717	INTRON nAChRalpha7
2R	12299916	2R_12299916_SNP [dm3] 2R_16412411_SNP [dm6]	G	A	2.423e^-4	0.717	INTRON Sema-2b
3L	2041418	3L_2041418_SNP [dm3] 3L_2041418_SNP [dm6]	A	G	2.425e^-4	0.717	SYNONYMOUS_CODING sls
3R	21945351	3R_21945351_SNP [dm3] 3R_26119629_SNP [dm6]	T	G	2.426e^-4	0.717	INTRON CG31324
3L	5349640	3L_5349640_SNP [dm3] 3L_5356540_SNP [dm6]	T	A	2.427e^-4	0.717	UPSTREAM lama DOWNSTREAM tRNA:CR32421 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16462285	2R_16462285_SNP [dm3] 2R_20574780_SNP [dm6]	G	A	2.429e^-4	0.717	INTRON qsm
3L	12834274	3L_12834274_SNP [dm3] 3L_12841174_SNP [dm6]	G	A	2.430e^-4	0.717	INTRON CG10960
2L	13678289	2L_13678289_SNP [dm3] 2L_13678289_SNP [dm6]	G	A	2.439e^-4	0.717	UTR_3_PRIME CG31814
3R	15130465	3R_15130465_SNP [dm3] 3R_19304743_SNP [dm6]	C	T	2.439e^-4	0.717	UTR_3_PRIME Dl
2L	8530721	2L_8530721_INS [dm3] 2L_8530721_INS [dm6]	C	CAC	2.441e^-4	0.717	INTRON CG17834
3L	4065292	3L_4065292_SNP [dm3] 3L_4065292_SNP [dm6]	G	A	2.442e^-4	0.717	SYNONYMOUS_CODING wit DOWNSTREAM dib
3R	25158201	3R_25158201_SNP [dm3] 3R_29332479_SNP [dm6]	G	A	2.446e^-4	0.717	INTERGENIC
3R	26390542	3R_26390542_SNP [dm3] 3R_30564820_SNP [dm6]	T	G	2.447e^-4	0.717	INTRON tmod
3R	25523093	3R_25523093_SNP [dm3] 3R_29697371_SNP [dm6]	G	A	2.448e^-4	0.717	DOWNSTREAM dmrt99B INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18554978	X_18554978_SNP [dm3] X_18660945_SNP [dm6]	C	T	2.453e^-4	0.717	UTR_3_PRIME fu INTRON CG6696
2R	3595931	2R_3595931_SNP [dm3] 2R_7708426_SNP [dm6]	T	C	2.458e^-4	0.717	INTRON tor
3L	16290203	3L_16290203_SNP [dm3] 3L_16297103_SNP [dm6]	A	C	2.463e^-4	0.717	INTERGENIC
3R	26120784	3R_26120784_SNP [dm3] 3R_30295062_SNP [dm6]	T	G	2.464e^-4	0.717	INTRON hdc
2R	18151035	2R_18151035_SNP [dm3] 2R_22263530_SNP [dm6]	A	T	2.465e^-4	0.717	INTRON dve
3L	14563075	3L_14563075_DEL [dm3] 3L_14569975_DEL [dm6]	TTTCCTT	T	2.465e^-4	0.717	INTERGENIC
X	19378813	X_19378813_SNP [dm3] X_19484780_SNP [dm6]	G	T	2.470e^-4	0.717	DOWNSTREAM CR43260 & 2 others INTERGENIC
2R	12797017	2R_12797017_SNP [dm3] 2R_16909512_SNP [dm6]	A	G	2.471e^-4	0.717	INTERGENIC
2R	6374075	2R_6374075_SNP [dm3] 2R_10486570_SNP [dm6]	C	T	2.472e^-4	0.717	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17600259	3R_17600259_SNP [dm3] 3R_21774537_SNP [dm6]	G	A	2.483e^-4	0.717	SYNONYMOUS_CODING GABA-B-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16150996	3L_16150996_SNP [dm3] 3L_16157896_SNP [dm6]	A	T	2.488e^-4	0.717	INTRON CG5151
2L	17580141	2L_17580141_SNP [dm3] 2L_17580141_SNP [dm6]	C	T	2.490e^-4	0.717	DOWNSTREAM CR45698 INTERGENIC
3R	23204888	3R_23204888_SNP [dm3] 3R_27379166_SNP [dm6]	G	A	2.492e^-4	0.717	UTR_3_PRIME side INTRON side
2L	10957369	2L_10957369_SNP [dm3] 2L_10957369_SNP [dm6]	A	T	2.494e^-4	0.717	INTRON dpr2
3L	21606795	3L_21606795_MNP [dm3] 3L_21613695_MNP [dm6]	GGT	AAA	2.496e^-4	0.717	DOWNSTREAM S1P & 1 other INTERGENIC
3L	22580663	3L_22580663_SNP [dm3] 3L_22587563_SNP [dm6]	G	T	2.500e^-4	0.717	INTRON CG14459	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17431105	X_17431105_SNP [dm3] X_17537072_SNP [dm6]	A	T	2.501e^-4	0.717	INTRON CG43658
2L	7665927	2L_7665927_SNP [dm3] 2L_7665927_SNP [dm6]	A	T	2.502e^-4	0.717	UPSTREAM Myo28B1 INTRON Slob
3L	4932435	3L_4932435_SNP [dm3] 3L_4932435_SNP [dm6]	C	A	2.503e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs
3L	1503155	3L_1503155_SNP [dm3] 3L_1503155_SNP [dm6]	G	T	2.506e^-4	0.717	UPSTREAM pUf68 DOWNSTREAM cue INTRON Psa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
X	10588061	X_10588061_INS [dm3] X_10694028_INS [dm6]	T	TT	2.508e^-4	0.717	INTRON X11Lbeta
3R	3745252	3R_3745252_SNP [dm3] 3R_7919530_SNP [dm6]	C	T	2.514e^-4	0.717	SYNONYMOUS_CODING CG10445 UPSTREAM lds	TF binding site mE1_TFBS_HSA
3R	22621352	3R_22621352_SNP [dm3] 3R_26795630_SNP [dm6]	A	G	2.517e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6987004	3R_6987004_SNP [dm3] 3R_11161282_SNP [dm6]	C	T	2.519e^-4	0.717	SYNONYMOUS_CODING CG4757
3R	21953965	3R_21953965_SNP [dm3] 3R_26128243_SNP [dm6]	G	A	2.519e^-4	0.717	UPSTREAM CG31324 DOWNSTREAM CG14556 INTRON CG31324
X	18539559	X_18539559_SNP [dm3] X_18645526_SNP [dm6]	C	T	2.521e^-4	0.717	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	9409068	2R_9409068_SNP [dm3] 2R_13521563_SNP [dm6]	C	T	2.527e^-4	0.717	UPSTREAM CG13331 INTRON Vmat
X	18537520	X_18537520_SNP [dm3] X_18643487_SNP [dm6]	T	C	2.527e^-4	0.717	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11336660	3L_11336660_SNP [dm3] 3L_11343560_SNP [dm6]	T	C	2.537e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
2R	4781059	2R_4781059_DEL [dm3] 2R_8893554_DEL [dm6]	AGTATATTCTGGTCGCA...	A	2.540e^-4	0.717	UPSTREAM Sec31 DOWNSTREAM Dmn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7219275	3L_7219275_SNP [dm3] 3L_7226175_SNP [dm6]	T	C	2.540e^-4	0.717	INTERGENIC
3L	2903567	3L_2903567_SNP [dm3] 3L_2903567_SNP [dm6]	A	G	2.543e^-4	0.717	INTRON Shab
X	20839922	X_20839922_SNP [dm3] X_20968895_SNP [dm6]	A	T	2.546e^-4	0.717	INTERGENIC
3L	9626871	3L_9626871_SNP [dm3] 3L_9633771_SNP [dm6]	G	A	2.550e^-4	0.717	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
3L	8633982	3L_8633982_SNP [dm3] 3L_8640882_SNP [dm6]	T	C	2.554e^-4	0.717	INTRON Cpr66D
3R	26058383	3R_26058383_INS [dm3] 3R_30232661_INS [dm6]	C	CC	2.557e^-4	0.717	INTERGENIC
3L	12833694	3L_12833694_SNP [dm3] 3L_12840594_SNP [dm6]	G	A	2.558e^-4	0.717	INTRON CG10960
3R	22938087	3R_22938087_SNP [dm3] 3R_27112365_SNP [dm6]	T	A	2.559e^-4	0.717	UPSTREAM CG5815 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3L	15747218	3L_15747218_DEL [dm3] 3L_15754118_DEL [dm6]	AA	A	2.561e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5582760	X_5582760_SNP [dm3] X_5688727_SNP [dm6]	G	A	2.564e^-4	0.717	SYNONYMOUS_CODING CG3160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	5899826	2L_5899826_SNP [dm3] 2L_5899826_SNP [dm6]	G	A	2.567e^-4	0.717	DOWNSTREAM CR44579 INTERGENIC
2R	18151056	2R_18151056_SNP [dm3] 2R_22263551_SNP [dm6]	T	A	2.572e^-4	0.717	INTRON dve
X	18546864	X_18546864_DEL [dm3] X_18652831_DEL [dm6]	AAGCAGA	A	2.578e^-4	0.717	DOWNSTREAM CG6659 INTRON Ing3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	2390221	2L_2390221_SNP [dm3] 2L_2390221_SNP [dm6]	C	G	2.581e^-4	0.717	NON_SYNONYMOUS_CODING CG43750
3R	17356117	3R_17356117_SNP [dm3] 3R_21530395_SNP [dm6]	G	T	2.583e^-4	0.717	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4360054	2L_4360054_SNP [dm3] 2L_4360054_SNP [dm6]	C	G	2.584e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs
3R	26713126	3R_26713126_SNP [dm3] 3R_30887404_SNP [dm6]	G	T	2.595e^-4	0.717	INTRON Sap-r
3L	5691107	3L_5691107_SNP [dm3] 3L_5698007_SNP [dm6]	G	A	2.615e^-4	0.717	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4262309	2L_4262309_DEL [dm3] 2L_4262309_DEL [dm6]	CC	A	2.617e^-4	0.717	INTERGENIC
3L	4994610	3L_4994610_SNP [dm3] 3L_4994610_SNP [dm6]	C	T	2.623e^-4	0.717	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	17280240	2R_17280240_SNP [dm3] 2R_21392735_SNP [dm6]	T	G	2.628e^-4	0.717	UTR_3_PRIME Sdc DOWNSTREAM Acox57D-d & 1 other
2L	5918914	2L_5918914_SNP [dm3] 2L_5918914_SNP [dm6]	G	A	2.629e^-4	0.717	SYNONYMOUS_CODING bchs
3L	16412284	3L_16412284_SNP [dm3] 3L_16419184_SNP [dm6]	C	G	2.632e^-4	0.717	SYNONYMOUS_CODING Aats-tyr UPSTREAM CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	22545881	3L_22545881_SNP [dm3] 3L_22552781_SNP [dm6]	A	G	2.634e^-4	0.717	DOWNSTREAM Trxr-2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5724251	X_5724251_SNP [dm3] X_5830218_SNP [dm6]	A	G	2.636e^-4	0.717	INTRON CG15765
2L	10957370	2L_10957370_INS [dm3] 2L_10957370_INS [dm6]	A	ATATAT	2.639e^-4	0.717	INTRON dpr2
2R	10838065	2R_10838065_SNP [dm3] 2R_14950560_SNP [dm6]	T	C	2.662e^-4	0.717	UPSTREAM aPKC INTRON aPKC
3R	22950351	3R_22950351_SNP [dm3] 3R_27124629_SNP [dm6]	G	T	2.677e^-4	0.717	UTR_5_PRIME CG6059 DOWNSTREAM CG6051	TF binding site mE1_TFBS_cad
3R	18064614	3R_18064614_SNP [dm3] 3R_22238892_SNP [dm6]	G	A	2.686e^-4	0.717	INTRON SKIP
2R	10882844	2R_10882844_SNP [dm3] 2R_14995339_SNP [dm6]	C	T	2.694e^-4	0.717	DOWNSTREAM CR43830 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4899318	X_4899318_SNP [dm3] X_5005285_SNP [dm6]	C	T	2.694e^-4	0.717	INTRON CR44833
3L	9297074	3L_9297074_SNP [dm3] 3L_9303974_SNP [dm6]	G	A	2.694e^-4	0.717	INTERGENIC
2L	8529982	2L_8529982_SNP [dm3] 2L_8529982_SNP [dm6]	A	T	2.695e^-4	0.717	INTRON CG17834	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8026683	2R_8026683_SNP [dm3] 2R_12139178_SNP [dm6]	C	T	2.697e^-4	0.717	UTR_3_PRIME CG18343 DOWNSTREAM skpB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1
X	20540255	X_20540255_SNP [dm3] X_20669228_SNP [dm6]	C	T	2.700e^-4	0.717	SYNONYMOUS_CODING CG1835
2L	14501569	2L_14501569_SNP [dm3] 2L_14501569_SNP [dm6]	C	T	2.703e^-4	0.717	INTERGENIC
2L	16893618	2L_16893618_SNP [dm3] 2L_16893618_SNP [dm6]	A	G	2.705e^-4	0.717	SYNONYMOUS_CODING tweek
3L	4930800	3L_4930800_SNP [dm3] 3L_4930800_SNP [dm6]	T	A	2.714e^-4	0.717	INTRON CR43627	regulatory region REDfly_CRMs
X	20839979	X_20839979_SNP [dm3] X_20968952_SNP [dm6]	C	T	2.718e^-4	0.717	INTERGENIC
2L	3823605	2L_3823605_SNP [dm3] 2L_3823605_SNP [dm6]	A	C	2.718e^-4	0.717	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16599895	2R_16599895_SNP [dm3] 2R_20712390_SNP [dm6]	C	T	2.720e^-4	0.717	INTRON dpr
2L	8139756	2L_8139756_SNP [dm3] 2L_8139756_SNP [dm6]	G	A	2.730e^-4	0.717	NON_SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16469022	2R_16469022_SNP [dm3] 2R_20581517_SNP [dm6]	A	G	2.731e^-4	0.717	INTRON qsm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	24144437	3R_24144437_SNP [dm3] 3R_28318715_SNP [dm6]	A	G	2.734e^-4	0.717	UTR_3_PRIME larp
3L	17485884	3L_17485884_SNP [dm3] 3L_17492784_SNP [dm6]	G	A	2.734e^-4	0.717	INTRON Oatp74D
3R	22979707	3R_22979707_SNP [dm3] 3R_27153985_SNP [dm6]	C	T	2.735e^-4	0.717	INTRON Men-b
2L	4203012	2L_4203012_SNP [dm3] 2L_4203012_SNP [dm6]	G	T	2.738e^-4	0.717	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
3R	9132613	3R_9132613_SNP [dm3] 3R_13306891_SNP [dm6]	C	A	2.738e^-4	0.717	INTRON CG32473
2L	934896	2L_934896_SNP [dm3] 2L_934896_SNP [dm6]	A	G	2.739e^-4	0.717	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9674768	3R_9674768_SNP [dm3] 3R_13849046_SNP [dm6]	T	C	2.745e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_cad
X	3340576	X_3340576_SNP [dm3] X_3446543_SNP [dm6]	T	A	2.749e^-4	0.717	INTRON CR44999 & 1 other
2L	17165167	2L_17165167_SNP [dm3] 2L_17165167_SNP [dm6]	A	C	2.752e^-4	0.717	INTRON beat-IIIa & 1 other
2R	10512334	2R_10512334_SNP [dm3] 2R_14624829_SNP [dm6]	A	T	2.755e^-4	0.717	DOWNSTREAM snoRNA:Me28S-G2703b & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
3L	21676871	3L_21676871_SNP [dm3] 3L_21683771_SNP [dm6]	C	T	2.761e^-4	0.717	SPLICE_SITE_REGION Sfp78E SYNONYMOUS_CODING Sfp78E UPSTREAM CR43978 DOWNSTREAM CG11248 INTRON Sfp78E
3L	10836012	3L_10836012_SNP [dm3] 3L_10842912_SNP [dm6]	G	C	2.764e^-4	0.717	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	19032923	3R_19032923_SNP [dm3] 3R_23207201_SNP [dm6]	A	G	2.766e^-4	0.717	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	735523	2L_735523_SNP [dm3] 2L_735523_SNP [dm6]	C	T	2.767e^-4	0.717	INTERGENIC
2L	4659204	2L_4659204_SNP [dm3] 2L_4659204_SNP [dm6]	T	A	2.768e^-4	0.717	INTERGENIC
X	18536975	X_18536975_SNP [dm3] X_18642942_SNP [dm6]	T	C	2.772e^-4	0.717	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16436723	X_16436723_DEL [dm3] X_16542690_DEL [dm6]	GAG	G	2.778e^-4	0.717	UTR_3_PRIME CG9902 DOWNSTREAM CG9902
2R	20050503	2R_20050503_SNP [dm3] 2R_24162980_SNP [dm6]	C	T	2.778e^-4	0.717	INTRON CG3328
X	18547185	X_18547185_SNP [dm3] X_18653152_SNP [dm6]	A	C	2.785e^-4	0.717	UPSTREAM Ing3 DOWNSTREAM CG6659 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16802862	3R_16802862_SNP [dm3] 3R_20977140_SNP [dm6]	G	T	2.789e^-4	0.717	DOWNSTREAM Atpalpha INTERGENIC
2L	2862498	2L_2862498_SNP [dm3] 2L_2862498_SNP [dm6]	T	C	2.800e^-4	0.717	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4113409	3L_4113409_SNP [dm3] 3L_4113409_SNP [dm6]	G	C	2.809e^-4	0.717	SYNONYMOUS_CODING Ack DOWNSTREAM Chd64	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9815627	3R_9815627_SNP [dm3] 3R_13989905_SNP [dm6]	C	G	2.815e^-4	0.717	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18151048	2R_18151048_SNP [dm3] 2R_22263543_SNP [dm6]	C	G	2.821e^-4	0.717	INTRON dve
3L	6313992	3L_6313992_SNP [dm3] 3L_6320892_SNP [dm6]	G	A	2.823e^-4	0.717	SYNONYMOUS_CODING Or65a
3L	4806411	3L_4806411_SNP [dm3] 3L_4806411_SNP [dm6]	G	A	2.825e^-4	0.717	SYNONYMOUS_CODING CG18808 DOWNSTREAM Dhc64C	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	27114243	3R_27114243_SNP [dm3] 3R_31288521_SNP [dm6]	A	T	2.829e^-4	0.717	INTERGENIC
3R	27115053	3R_27115053_SNP [dm3] 3R_31289331_SNP [dm6]	C	T	2.829e^-4	0.717	INTERGENIC
3R	5906962	3R_5906962_SNP [dm3] 3R_10081240_SNP [dm6]	A	C	2.831e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	6431461	X_6431461_SNP [dm3] X_6537428_SNP [dm6]	A	C	2.833e^-4	0.717	UTR_3_PRIME dx
3R	9747684	3R_9747684_SNP [dm3] 3R_13921962_SNP [dm6]	T	A	2.835e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27816314	3R_27816314_SNP [dm3] 3R_31990592_SNP [dm6]	C	T	2.840e^-4	0.717	SYNONYMOUS_CODING CG2003 UTR_3_PRIME CG2003 INTRON heph
3R	20907216	3R_20907216_SNP [dm3] 3R_25081494_SNP [dm6]	A	G	2.843e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	17115744	X_17115744_SNP [dm3] X_17221711_SNP [dm6]	A	T	2.848e^-4	0.717	NON_SYNONYMOUS_CODING CG5172
3L	8957870	3L_8957870_DEL [dm3] 3L_8964770_DEL [dm6]	TT	T	2.854e^-4	0.717	UPSTREAM CG5660 DOWNSTREAM CG5653 INTERGENIC
2L	6909926	2L_6909926_SNP [dm3] 2L_6909926_SNP [dm6]	A	G	2.857e^-4	0.717	SYNONYMOUS_CODING Rat1	TF binding site mE1_TFBS_sens
X	9068395	X_9068395_DEL [dm3] X_9174362_DEL [dm6]	AA	A	2.859e^-4	0.717	UTR_3_PRIME mei-P26
3L	4327230	3L_4327230_SNP [dm3] 3L_4327230_SNP [dm6]	C	A	2.865e^-4	0.717	SPLICE_SITE_REGION Cip4 INTRON Cip4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13733253	2R_13733253_INS [dm3] 2R_17845748_INS [dm6]	C	CTC	2.867e^-4	0.717	UPSTREAM olf186-M INTRON olf186-F
3R	15418263	3R_15418263_SNP [dm3] 3R_19592541_SNP [dm6]	A	G	2.867e^-4	0.717	SYNONYMOUS_CODING Dys
X	18534494	X_18534494_SNP [dm3] X_18640461_SNP [dm6]	A	T	2.868e^-4	0.717	INTRON Rip11	TF binding site mE1_TFBS_HSA
X	10062596	X_10062596_SNP [dm3] X_10168563_SNP [dm6]	C	T	2.869e^-4	0.717	INTRON CR44894 & 1 other
X	10062599	X_10062599_SNP [dm3] X_10168566_SNP [dm6]	T	C	2.869e^-4	0.717	INTRON CR44894 & 1 other
3R	21853577	3R_21853577_SNP [dm3] 3R_26027855_SNP [dm6]	T	G	2.872e^-4	0.717	DOWNSTREAM E_spl_m5-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Stat92E
X	18953963	X_18953963_SNP [dm3] X_19059930_SNP [dm6]	C	G	2.875e^-4	0.717	INTRON CG14190
2L	11431464	2L_11431464_SNP [dm3] 2L_11431464_SNP [dm6]	G	A	2.882e^-4	0.717	INTERGENIC
2L	8562933	2L_8562933_SNP [dm3] 2L_8562933_SNP [dm6]	C	G	2.882e^-4	0.717	INTRON Sema-1a
3L	3773882	3L_3773882_SNP [dm3] 3L_3773882_SNP [dm6]	G	T	2.888e^-4	0.717	INTRON CG32264
2L	3933789	2L_3933789_SNP [dm3] 2L_3933789_SNP [dm6]	C	G	2.893e^-4	0.717	INTRON fred
3L	11619365	3L_11619365_SNP [dm3] 3L_11626265_SNP [dm6]	T	G	2.901e^-4	0.717	UPSTREAM PCID2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9132603	3R_9132603_SNP [dm3] 3R_13306881_SNP [dm6]	A	T	2.902e^-4	0.717	INTRON CG32473
X	18535395	X_18535395_SNP [dm3] X_18641362_SNP [dm6]	A	C	2.903e^-4	0.717	INTRON Rip11
3L	2547296	3L_2547296_DEL [dm3] 3L_2547296_DEL [dm6]	CAA	T	2.904e^-4	0.717	INTRON Spn
3L	7120471	3L_7120471_SNP [dm3] 3L_7127371_SNP [dm6]	A	T	2.913e^-4	0.717	DOWNSTREAM CG8629 INTRON BBS1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17200932	X_17200932_INS [dm3] X_17306899_INS [dm6]	C	CC	2.915e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1720652	2L_1720652_SNP [dm3] 2L_1720652_SNP [dm6]	G	C	2.920e^-4	0.717	INTRON Rim2
2L	14745011	2L_14745011_SNP [dm3] 2L_14745011_SNP [dm6]	A	G	2.921e^-4	0.717	SYNONYMOUS_CODING CG42587 UPSTREAM CR45459 DOWNSTREAM CR45460 & 1 other
3R	5196301	3R_5196301_SNP [dm3] 3R_9370579_SNP [dm6]	T	C	2.923e^-4	0.717	INTRON FER
3L	16017902	3L_16017902_SNP [dm3] 3L_16024802_SNP [dm6]	A	T	2.924e^-4	0.717	INTRON Notum	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	9243749	3L_9243749_SNP [dm3] 3L_9250649_SNP [dm6]	C	G	2.925e^-4	0.717	SYNONYMOUS_CODING CG4477	TF binding site BDTNP1_TFBS_twi
2R	14575853	2R_14575853_INS [dm3] 2R_18688348_INS [dm6]	C	CAC	2.928e^-4	0.717	UTR_5_PRIME Sik3 UTR_3_PRIME CG42855 UPSTREAM Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	18537277	X_18537277_SNP [dm3] X_18643244_SNP [dm6]	T	C	2.931e^-4	0.717	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7316267	3L_7316267_SNP [dm3] 3L_7323167_SNP [dm6]	G	A	2.932e^-4	0.717	UPSTREAM Rint1 & 1 other INTRON RhoGEF4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	4794714	2R_4794714_SNP [dm3] 2R_8907209_SNP [dm6]	C	G	2.934e^-4	0.717	UPSTREAM CG30349 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	18536611	X_18536611_SNP [dm3] X_18642578_SNP [dm6]	A	G	2.935e^-4	0.717	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22945122	3R_22945122_SNP [dm3] 3R_27119400_SNP [dm6]	G	T	2.938e^-4	0.717	DOWNSTREAM CG5880 INTRON CG5882	TF binding site mE1_TFBS_cad
2R	20050689	2R_20050689_SNP [dm3] 2R_24163166_SNP [dm6]	C	T	2.940e^-4	0.717	INTRON CG3328
3L	12849362	3L_12849362_SNP [dm3] 3L_12856262_SNP [dm6]	T	C	2.941e^-4	0.717	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5911996	3R_5911996_SNP [dm3] 3R_10086274_SNP [dm6]	C	G	2.945e^-4	0.717	INTRON CR45054	TF binding site mE1_TFBS_Trl
3R	27548960	3R_27548960_SNP [dm3] 3R_31723238_SNP [dm6]	G	A	2.947e^-4	0.717	INTRON ttk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	5792523	3R_5792523_SNP [dm3] 3R_9966801_SNP [dm6]	T	G	2.947e^-4	0.717	INTRON Glut4EF
X	3730995	X_3730995_SNP [dm3] X_3836962_SNP [dm6]	C	T	2.956e^-4	0.717	INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
3R	24766916	3R_24766916_SNP [dm3] 3R_28941194_SNP [dm6]	C	G	2.957e^-4	0.717	INTRON CG14521
3L	5796894	3L_5796894_SNP [dm3] 3L_5803794_SNP [dm6]	A	C	2.957e^-4	0.717	UTR_5_PRIME CG42272 INTRON S6k & 1 other	TF binding site BDTNP1_TFBS_twi
3R	14054509	3R_14054509_SNP [dm3] 3R_18228787_SNP [dm6]	G	A	2.958e^-4	0.717	DOWNSTREAM Mdh2 INTERGENIC
3R	5907890	3R_5907890_SNP [dm3] 3R_10082168_SNP [dm6]	C	T	2.972e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17350936	3R_17350936_SNP [dm3] 3R_21525214_SNP [dm6]	A	T	2.974e^-4	0.717	SYNONYMOUS_CODING CG7956 INTRON CG7956	TF binding site mE1_TFBS_cad
3L	9084516	3L_9084516_SNP [dm3] 3L_9091416_SNP [dm6]	C	T	2.975e^-4	0.717	SYNONYMOUS_CODING Tequila
2R	16934567	2R_16934567_SNP [dm3] 2R_21047062_SNP [dm6]	A	G	2.982e^-4	0.717	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18603092	2L_18603092_SNP [dm3] 2L_18603092_SNP [dm6]	C	T	2.984e^-4	0.717	INTRON CG10413
2L	9744781	2L_9744781_SNP [dm3] 2L_9744781_SNP [dm6]	A	C	3.002e^-4	0.717	INTRON Nckx30C
2L	888076	2L_888076_SNP [dm3] 2L_888076_SNP [dm6]	C	A	3.003e^-4	0.717	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	3887517	2R_3887517_DEL [dm3] 2R_8000012_DEL [dm6]	TGTCACCC	T	3.006e^-4	0.717	DOWNSTREAM CG11191 INTERGENIC
3R	25909492	3R_25909492_SNP [dm3] 3R_30083770_SNP [dm6]	G	A	3.007e^-4	0.717	INTRON sima
3L	9563195	3L_9563195_SNP [dm3] 3L_9570095_SNP [dm6]	T	A	3.008e^-4	0.717	INTRON CG42673
3L	10560796	3L_10560796_SNP [dm3] 3L_10567696_SNP [dm6]	A	T	3.009e^-4	0.717	INTRON A2bp1
3L	15974738	3L_15974738_SNP [dm3] 3L_15981638_SNP [dm6]	C	A	3.014e^-4	0.717	UTR_3_PRIME CG17027 INTRON brm	TF binding site mE1_TFBS_cad
3R	13197772	3R_13197772_SNP [dm3] 3R_17372050_SNP [dm6]	G	T	3.014e^-4	0.717	UPSTREAM CR44256 INTERGENIC
2R	16599772	2R_16599772_SNP [dm3] 2R_20712267_SNP [dm6]	G	A	3.014e^-4	0.717	INTRON dpr
X	3141345	X_3141345_SNP [dm3] X_3247312_SNP [dm6]	G	T	3.020e^-4	0.717	INTRON dnc
3R	9157259	3R_9157259_SNP [dm3] 3R_13331537_SNP [dm6]	T	C	3.020e^-4	0.717	SYNONYMOUS_CODING PK2-R2
2L	10957367	2L_10957367_SNP [dm3] 2L_10957367_SNP [dm6]	A	C	3.026e^-4	0.717	INTRON dpr2
X	16536721	X_16536721_SNP [dm3] X_16642688_SNP [dm6]	C	T	3.028e^-4	0.717	SYNONYMOUS_CODING mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	17179565	X_17179565_SNP [dm3] X_17285532_SNP [dm6]	G	A	3.030e^-4	0.717	DOWNSTREAM Fim INTRON CG5445	TF binding site BDTNP1_TFBS_dl
2L	905138	2L_905138_SNP [dm3] 2L_905138_SNP [dm6]	T	G	3.033e^-4	0.717	DOWNSTREAM CR45261 INTERGENIC
2R	16977435	2R_16977435_SNP [dm3] 2R_21089930_SNP [dm6]	C	A	3.037e^-4	0.717	SYNONYMOUS_CODING Rbpn-5 DOWNSTREAM Treh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5515916	X_5515916_SNP [dm3] X_5621883_SNP [dm6]	G	T	3.037e^-4	0.717	UPSTREAM l_1_G0045 DOWNSTREAM mir-3645 INTRON Mlc-c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15787383	2L_15787383_SNP [dm3] 2L_15787383_SNP [dm6]	A	G	3.041e^-4	0.717	SYNONYMOUS_CODING CG18109
3L	16017900	3L_16017900_SNP [dm3] 3L_16024800_SNP [dm6]	A	T	3.041e^-4	0.717	INTRON Notum	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	11838290	3L_11838290_DEL [dm3] 3L_11845190_DEL [dm6]	AGATA	G	3.050e^-4	0.718	INTERGENIC
X	8182548	X_8182548_SNP [dm3] X_8288515_SNP [dm6]	G	T	3.059e^-4	0.718	INTRON nAChRalpha3
3L	7753657	3L_7753657_SNP [dm3] 3L_7760557_SNP [dm6]	T	G	3.067e^-4	0.718	UTR_5_PRIME Hn UPSTREAM Hn
3L	21606790	3L_21606790_DEL [dm3] 3L_21613690_DEL [dm6]	AATC	A	3.070e^-4	0.718	DOWNSTREAM S1P & 1 other INTERGENIC
3L	6089335	3L_6089335_SNP [dm3] 3L_6096235_SNP [dm6]	A	G	3.082e^-4	0.718	SYNONYMOUS_CODING loj
X	18537461	X_18537461_SNP [dm3] X_18643428_SNP [dm6]	C	T	3.082e^-4	0.718	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16469032	X_16469032_SNP [dm3] X_16574999_SNP [dm6]	A	G	3.083e^-4	0.718	INTRON CanA-14F	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5922755	3R_5922755_SNP [dm3] 3R_10097033_SNP [dm6]	G	A	3.091e^-4	0.718	EXON CR43459
2L	6091487	2L_6091487_SNP [dm3] 2L_6091487_SNP [dm6]	T	A	3.099e^-4	0.718	UTR_5_PRIME CG45075 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	18598073	3R_18598073_SNP [dm3] 3R_22772351_SNP [dm6]	T	G	3.106e^-4	0.718	UPSTREAM CG43095 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_kn
3R	27672342	3R_27672342_SNP [dm3] 3R_31846620_SNP [dm6]	T	A	3.113e^-4	0.718	DOWNSTREAM heph & 1 other INTERGENIC
2R	10838068	2R_10838068_SNP [dm3] 2R_14950563_SNP [dm6]	T	C	3.126e^-4	0.718	UPSTREAM aPKC INTRON aPKC
3L	11837355	3L_11837355_SNP [dm3] 3L_11844255_SNP [dm6]	G	T	3.127e^-4	0.718	INTERGENIC
2R	6833461	2R_6833461_SNP [dm3] 2R_10945956_SNP [dm6]	A	G	3.131e^-4	0.718	UPSTREAM CR45228 INTERGENIC
2L	7962112	2L_7962112_INS [dm3] 2L_7962112_INS [dm6]	T	TT	3.135e^-4	0.718	INTRON Snoo
3R	24660301	3R_24660301_SNP [dm3] 3R_28834579_SNP [dm6]	C	G	3.137e^-4	0.718	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3L	22120752	3L_22120752_SNP [dm3] 3L_22127652_SNP [dm6]	A	G	3.145e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2159500	3L_2159500_SNP [dm3] 3L_2159500_SNP [dm6]	C	T	3.147e^-4	0.718	INTRON CG15822	TF binding site mE1_TFBS_inv
3R	7065707	3R_7065707_SNP [dm3] 3R_11239985_SNP [dm6]	C	T	3.150e^-4	0.718	NON_SYNONYMOUS_CODING CG31388 UTR_3_PRIME CG31388 DOWNSTREAM scpr-B	TF binding site BDTNP1_TFBS_twi
2R	16090321	2R_16090321_SNP [dm3] 2R_20202816_SNP [dm6]	C	G	3.151e^-4	0.718	INTERGENIC
2L	21007382	2L_21007382_SNP [dm3] 2L_21007382_SNP [dm6]	G	T	3.151e^-4	0.718	INTRON CG42238
2R	8872554	2R_8872554_SNP [dm3] 2R_12985049_SNP [dm6]	A	G	3.156e^-4	0.718	UPSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	5562469	3L_5562469_SNP [dm3] 3L_5569369_SNP [dm6]	C	T	3.158e^-4	0.718	SPLICE_SITE_REGION Msr-110 INTRON Msr-110
X	5361576	X_5361576_SNP [dm3] X_5467543_SNP [dm6]	C	T	3.165e^-4	0.718	INTRON SPR
2L	4874006	2L_4874006_SNP [dm3] 2L_4874006_SNP [dm6]	A	T	3.166e^-4	0.718	SPLICE_SITE_REGION pog INTRON pog
2L	7052253	2L_7052253_SNP [dm3] 2L_7052253_SNP [dm6]	T	C	3.170e^-4	0.718	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	4047807	3R_4047807_SNP [dm3] 3R_8222085_SNP [dm6]	T	A	3.170e^-4	0.718	UTR_3_PRIME CG18249
3R	12737063	3R_12737063_SNP [dm3] 3R_16911341_SNP [dm6]	T	C	3.171e^-4	0.718	INTRON iab-8
X	18539718	X_18539718_SNP [dm3] X_18645685_SNP [dm6]	A	T	3.181e^-4	0.718	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17003081	2L_17003081_SNP [dm3] 2L_17003081_SNP [dm6]	T	A	3.184e^-4	0.718	INTERGENIC
X	20839871	X_20839871_INS [dm3] X_20968844_INS [dm6]	A	AA	3.187e^-4	0.718	INTERGENIC
2R	18282117	2R_18282117_SNP [dm3] 2R_22394612_SNP [dm6]	A	G	3.188e^-4	0.718	SPLICE_SITE_REGION babos SYNONYMOUS_CODING babos DOWNSTREAM CG13506
3R	22444097	3R_22444097_SNP [dm3] 3R_26618375_SNP [dm6]	A	T	3.190e^-4	0.718	UPSTREAM TwdlM INTERGENIC
2L	4659256	2L_4659256_SNP [dm3] 2L_4659256_SNP [dm6]	A	C	3.206e^-4	0.718	INTERGENIC
2R	13799198	2R_13799198_SNP [dm3] 2R_17911693_SNP [dm6]	A	G	3.207e^-4	0.718	INTRON Elk
2L	9432134	2L_9432134_SNP [dm3] 2L_9432134_SNP [dm6]	G	A	3.214e^-4	0.718	INTRON scat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
X	6913388	X_6913388_SNP [dm3] X_7019355_SNP [dm6]	T	G	3.214e^-4	0.718	INTERGENIC
2L	9743192	2L_9743192_SNP [dm3] 2L_9743192_SNP [dm6]	C	A	3.218e^-4	0.718	NON_SYNONYMOUS_CODING Nckx30C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18558429	X_18558429_SNP [dm3] X_18664396_SNP [dm6]	G	A	3.218e^-4	0.718	INTERGENIC
3L	7316157	3L_7316157_SNP [dm3] 3L_7323057_SNP [dm6]	G	T	3.220e^-4	0.718	NON_SYNONYMOUS_CODING RhoGEF4 UPSTREAM Rint1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	6542753	3L_6542753_SNP [dm3] 3L_6549653_SNP [dm6]	C	T	3.225e^-4	0.718	UTR_3_PRIME sfl	TF binding site mE1_TFBS_bab1 mE1_TFBS_kn
2L	16927078	2L_16927078_SNP [dm3] 2L_16927078_SNP [dm6]	A	G	3.227e^-4	0.718	INTERGENIC
3L	4482177	3L_4482177_SNP [dm3] 3L_4482177_SNP [dm6]	G	A	3.230e^-4	0.718	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
3L	6817450	3L_6817450_SNP [dm3] 3L_6824350_SNP [dm6]	G	A	3.233e^-4	0.718	INTERGENIC	regulatory region REDfly_CRMs
2L	18195953	2L_18195953_SNP [dm3] 2L_18195953_SNP [dm6]	A	C	3.236e^-4	0.718	INTRON CG42750	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1293967	X_1293967_SNP [dm3] X_1399934_SNP [dm6]	G	A	3.241e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16906216	3L_16906216_SNP [dm3] 3L_16913116_SNP [dm6]	A	G	3.247e^-4	0.718	INTRON Lmpt
2L	8264236	2L_8264236_SNP [dm3] 2L_8264236_SNP [dm6]	T	A	3.251e^-4	0.718	INTRON Btk29A
2L	928532	2L_928532_SNP [dm3] 2L_928532_SNP [dm6]	C	A	3.252e^-4	0.718	INTRON CG4341
2L	9971964	2L_9971964_INS [dm3] 2L_9971964_INS [dm6]	C	CTTAAACTGT	3.254e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	20855307	2L_20855307_SNP [dm3] 2L_20855307_SNP [dm6]	C	T	3.257e^-4	0.718	INTRON twit
3L	11859183	3L_11859183_SNP [dm3] 3L_11866083_SNP [dm6]	A	C	3.258e^-4	0.718	INTRON CG44837
X	18536977	X_18536977_SNP [dm3] X_18642944_SNP [dm6]	C	T	3.267e^-4	0.718	INTRON Rip11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3081352	X_3081352_SNP [dm3] X_3187319_SNP [dm6]	A	T	3.276e^-4	0.718	INTRON dnc
3R	9155696	3R_9155696_SNP [dm3] 3R_13329974_SNP [dm6]	G	A	3.284e^-4	0.718	INTRON PK2-R2
2L	13977236	2L_13977236_SNP [dm3] 2L_13977236_SNP [dm6]	C	T	3.288e^-4	0.718	UPSTREAM NimC1 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9398773	3L_9398773_SNP [dm3] 3L_9405673_SNP [dm6]	T	G	3.296e^-4	0.718	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022	TF binding site mE1_TFBS_sens
2L	17128629	2L_17128629_SNP [dm3] 2L_17128629_SNP [dm6]	T	C	3.303e^-4	0.718	INTERGENIC
3L	19610653	3L_19610653_SNP [dm3] 3L_19617553_SNP [dm6]	T	C	3.308e^-4	0.718	SYNONYMOUS_CODING l_3_76BDm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	18553741	X_18553741_SNP [dm3] X_18659708_SNP [dm6]	T	C	3.312e^-4	0.718	SYNONYMOUS_CODING fu DOWNSTREAM CG6696
2R	15257547	2R_15257547_SNP [dm3] 2R_19370042_SNP [dm6]	T	G	3.321e^-4	0.718	SYNONYMOUS_CODING CG9416
2L	6461159	2L_6461159_DEL [dm3] 2L_6461159_DEL [dm6]	ACTACATGA	A	3.326e^-4	0.718	INTRON CG16947
3R	19078967	3R_19078967_SNP [dm3] 3R_23253245_SNP [dm6]	A	G	3.330e^-4	0.718	SYNONYMOUS_CODING EloA
2L	6157496	2L_6157496_SNP [dm3] 2L_6157496_SNP [dm6]	G	T	3.334e^-4	0.718	INTERGENIC
3L	3802961	3L_3802961_SNP [dm3] 3L_3802961_SNP [dm6]	A	C	3.335e^-4	0.718	DOWNSTREAM ntc INTRON CG32264
X	17183395	X_17183395_SNP [dm3] X_17289362_SNP [dm6]	A	T	3.350e^-4	0.718	INTRON CG5445 & 1 other
2L	2390526	2L_2390526_SNP [dm3] 2L_2390526_SNP [dm6]	G	A	3.351e^-4	0.718	NON_SYNONYMOUS_CODING CG43750
3R	14256844	3R_14256844_SNP [dm3] 3R_18431122_SNP [dm6]	T	C	3.352e^-4	0.718	DOWNSTREAM fru INTRON fru
3R	2711605	3R_2711605_SNP [dm3] 3R_6885883_SNP [dm6]	A	T	3.356e^-4	0.718	UPSTREAM CR44931 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16411801	3L_16411801_SNP [dm3] 3L_16418701_SNP [dm6]	T	C	3.357e^-4	0.718	SYNONYMOUS_CODING Aats-tyr UPSTREAM CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13818891	2R_13818891_SNP [dm3] 2R_17931386_SNP [dm6]	A	C	3.358e^-4	0.718	INTERGENIC
2L	2391250	2L_2391250_SNP [dm3] 2L_2391250_SNP [dm6]	C	T	3.363e^-4	0.718	UPSTREAM VGlut & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	17744310	3L_17744310_SNP [dm3] 3L_17751210_SNP [dm6]	C	T	3.364e^-4	0.718	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3R	17774614	3R_17774614_SNP [dm3] 3R_21948892_SNP [dm6]	G	A	3.366e^-4	0.718	UPSTREAM Eip93F INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	19619917	3R_19619917_SNP [dm3] 3R_23794195_SNP [dm6]	G	A	3.367e^-4	0.718	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_sens
X	10553946	X_10553946_SNP [dm3] X_10659913_SNP [dm6]	A	G	3.378e^-4	0.718	NON_SYNONYMOUS_CODING CG2111 INTRON X11Lbeta	TF binding site mE1_TFBS_chinmo
3L	6313783	3L_6313783_SNP [dm3] 3L_6320683_SNP [dm6]	G	A	3.382e^-4	0.718	NON_SYNONYMOUS_CODING Or65a
3R	9148562	3R_9148562_SNP [dm3] 3R_13322840_SNP [dm6]	C	T	3.384e^-4	0.718	INTERGENIC
3L	2737982	3L_2737982_SNP [dm3] 3L_2737982_SNP [dm6]	T	A	3.403e^-4	0.718	INTRON Mrtf
X	20839883	X_20839883_SNP [dm3] X_20968856_SNP [dm6]	T	A	3.409e^-4	0.718	INTERGENIC
X	15261232	X_15261232_SNP [dm3] X_15367199_SNP [dm6]	G	T	3.416e^-4	0.718	INTRON acj6
2L	6320276	2L_6320276_SNP [dm3] 2L_6320276_SNP [dm6]	C	T	3.421e^-4	0.718	SYNONYMOUS_CODING Ddr
X	18551632	X_18551632_SNP [dm3] X_18657599_SNP [dm6]	A	G	3.428e^-4	0.718	UPSTREAM fu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	15385872	2R_15385872_SNP [dm3] 2R_19498367_SNP [dm6]	G	A	3.430e^-4	0.718	INTRON CG15120	TF binding site mE1_TFBS_cad
2R	16173125	2R_16173125_SNP [dm3] 2R_20285620_SNP [dm6]	T	C	3.432e^-4	0.718	INTRON CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17776118	3R_17776118_DEL [dm3] 3R_21950396_DEL [dm6]	GG	G	3.442e^-4	0.718	INTRON Eip93F	TF binding site mE1_TFBS_zfh1
3R	7720478	3R_7720478_SNP [dm3] 3R_11894756_SNP [dm6]	T	C	3.443e^-4	0.718	INTRON Cad87A
3L	8066548	3L_8066548_SNP [dm3] 3L_8073448_SNP [dm6]	A	G	3.446e^-4	0.718	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6669004	3L_6669004_SNP [dm3] 3L_6675904_SNP [dm6]	T	C	3.452e^-4	0.718	INTERGENIC
2R	13142838	2R_13142838_SNP [dm3] 2R_17255333_SNP [dm6]	T	A	3.461e^-4	0.718	UTR_5_PRIME CG43272 UPSTREAM CR43660 INTRON mbl
X	6994664	X_6994664_SNP [dm3] X_7100631_SNP [dm6]	T	C	3.463e^-4	0.718	INTRON CG4615	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9132608	3R_9132608_SNP [dm3] 3R_13306886_SNP [dm6]	C	T	3.467e^-4	0.718	INTRON CG32473
2L	4254791	2L_4254791_INS [dm3] 2L_4254791_INS [dm6]	T	TA	3.467e^-4	0.718	DOWNSTREAM CR45294 INTERGENIC
2L	9742953	2L_9742953_SNP [dm3] 2L_9742953_SNP [dm6]	T	C	3.469e^-4	0.718	NON_SYNONYMOUS_CODING Nckx30C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4926046	3L_4926046_SNP [dm3] 3L_4926046_SNP [dm6]	G	T	3.477e^-4	0.718	INTERGENIC
3L	11652837	3L_11652837_SNP [dm3] 3L_11659737_SNP [dm6]	G	A	3.479e^-4	0.718	INTRON CG32085
2R	13179385	2R_13179385_SNP [dm3] 2R_17291880_SNP [dm6]	A	C	3.480e^-4	0.718	INTRON mbl
2L	8531131	2L_8531131_SNP [dm3] 2L_8531131_SNP [dm6]	C	A	3.481e^-4	0.718	INTRON CG17834
3R	315919	3R_315919_SNP [dm3] 3R_4490197_SNP [dm6]	A	T	3.487e^-4	0.718	INTERGENIC
X	2485787	X_2485787_SNP [dm3] X_2591754_SNP [dm6]	C	T	3.488e^-4	0.718	UPSTREAM egh INTRON egh
X	18553488	X_18553488_SNP [dm3] X_18659455_SNP [dm6]	C	T	3.501e^-4	0.718	SYNONYMOUS_CODING fu	TF binding site mE1_TFBS_sens
X	19352701	X_19352701_SNP [dm3] X_19458668_SNP [dm6]	T	G	3.502e^-4	0.718	INTRON kek5	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	901873	2L_901873_SNP [dm3] 2L_901873_SNP [dm6]	T	A	3.508e^-4	0.718	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10561096	3L_10561096_SNP [dm3] 3L_10567996_SNP [dm6]	T	A	3.510e^-4	0.718	INTRON A2bp1
2L	904898	2L_904898_SNP [dm3] 2L_904898_SNP [dm6]	G	C	3.512e^-4	0.718	DOWNSTREAM CR45261 INTERGENIC
X	18546237	X_18546237_SNP [dm3] X_18652204_SNP [dm6]	T	C	3.517e^-4	0.718	SYNONYMOUS_CODING Ing3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26486159	3R_26486159_SNP [dm3] 3R_30660437_SNP [dm6]	T	C	3.520e^-4	0.718	INTERGENIC
3R	27101134	3R_27101134_SNP [dm3] 3R_31275412_SNP [dm6]	C	T	3.522e^-4	0.718	INTERGENIC
3L	17744139	3L_17744139_DEL [dm3] 3L_17751039_DEL [dm6]	GCG	G	3.530e^-4	0.718	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17744147	3L_17744147_SNP [dm3] 3L_17751047_SNP [dm6]	T	A	3.530e^-4	0.718	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17744155	3L_17744155_SNP [dm3] 3L_17751055_SNP [dm6]	T	G	3.530e^-4	0.718	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744200	3L_17744200_SNP [dm3] 3L_17751100_SNP [dm6]	G	A	3.530e^-4	0.718	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
3L	17744211	3L_17744211_SNP [dm3] 3L_17751111_SNP [dm6]	A	G	3.530e^-4	0.718	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
2R	6594967	2R_6594967_SNP [dm3] 2R_10707462_SNP [dm6]	T	C	3.530e^-4	0.718	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
2L	17165686	2L_17165686_SNP [dm3] 2L_17165686_SNP [dm6]	G	C	3.531e^-4	0.718	INTRON beat-IIIa & 1 other
2R	16010274	2R_16010274_SNP [dm3] 2R_20122769_SNP [dm6]	T	A	3.540e^-4	0.718	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
X	18555751	X_18555751_SNP [dm3] X_18661718_SNP [dm6]	C	T	3.542e^-4	0.718	DOWNSTREAM fu INTRON CG6696	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3760913	2L_3760913_SNP [dm3] 2L_3760913_SNP [dm6]	G	C	3.544e^-4	0.718	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo
2L	18615029	2L_18615029_SNP [dm3] 2L_18615029_SNP [dm6]	C	G	3.553e^-4	0.718	SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
3L	1085788	3L_1085788_SNP [dm3] 3L_1085788_SNP [dm6]	G	A	3.561e^-4	0.718	INTRON bab1
2R	18664077	2R_18664077_SNP [dm3] 2R_22776572_SNP [dm6]	G	A	3.565e^-4	0.718	INTRON CG42260
2R	10607572	2R_10607572_SNP [dm3] 2R_14720067_SNP [dm6]	T	A	3.589e^-4	0.718	INTERGENIC
3L	7144015	3L_7144015_SNP [dm3] 3L_7150915_SNP [dm6]	T	G	3.589e^-4	0.718	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21920595	3L_21920595_SNP [dm3] 3L_21927495_SNP [dm6]	A	T	3.599e^-4	0.718	UTR_3_PRIME mub DOWNSTREAM mub
2L	3768642	2L_3768642_SNP [dm3] 2L_3768642_SNP [dm6]	G	A	3.612e^-4	0.718	UTR_3_PRIME CG43707 DOWNSTREAM mir-1004
2R	6400910	2R_6400910_SNP [dm3] 2R_10513405_SNP [dm6]	G	T	3.615e^-4	0.718	INTRON lola
2L	10602837	2L_10602837_SNP [dm3] 2L_10602837_SNP [dm6]	G	A	3.622e^-4	0.718	INTRON Trim9
3L	7434902	3L_7434902_SNP [dm3] 3L_7441802_SNP [dm6]	T	C	3.630e^-4	0.718	INTRON CG42458
3L	10560842	3L_10560842_SNP [dm3] 3L_10567742_SNP [dm6]	T	A	3.630e^-4	0.718	INTRON A2bp1
2R	8291337	2R_8291337_SNP [dm3] 2R_12403832_SNP [dm6]	C	T	3.631e^-4	0.718	INTRON Cpr49Ae	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
3R	26120808	3R_26120808_SNP [dm3] 3R_30295086_SNP [dm6]	A	T	3.636e^-4	0.718	INTRON hdc
X	16876145	X_16876145_SNP [dm3] X_16982112_SNP [dm6]	T	C	3.637e^-4	0.718	INTRON CG45002
2L	843166	2L_843166_SNP [dm3] 2L_843166_SNP [dm6]	T	C	3.638e^-4	0.718	UPSTREAM drongo INTRON drongo
3L	1671465	3L_1671465_SNP [dm3] 3L_1671465_SNP [dm6]	C	T	3.639e^-4	0.718	SYNONYMOUS_CODING CG13930	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	14650368	3L_14650368_SNP [dm3] 3L_14657268_SNP [dm6]	C	A	3.644e^-4	0.718	INTRON dlp	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	8291312	2R_8291312_SNP [dm3] 2R_12403807_SNP [dm6]	T	C	3.645e^-4	0.718	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
3R	5907322	3R_5907322_SNP [dm3] 3R_10081600_SNP [dm6]	C	T	3.655e^-4	0.718	INTERGENIC
3R	17219319	3R_17219319_DEL [dm3] 3R_21393597_DEL [dm6]	AT	A	3.660e^-4	0.718	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	5406773	X_5406773_SNP [dm3] X_5512740_SNP [dm6]	A	G	3.662e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	841477	2L_841477_DEL [dm3] 2L_841477_DEL [dm6]	ATA	A	3.672e^-4	0.718	INTRON drongo
2L	7521128	2L_7521128_DEL [dm3] 2L_7521128_DEL [dm6]	CC	C	3.675e^-4	0.718	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	17735527	3R_17735527_SNP [dm3] 3R_21909805_SNP [dm6]	G	A	3.680e^-4	0.718	INTERGENIC
2L	2390101	2L_2390101_DEL [dm3] 2L_2390101_DEL [dm6]	TGCTC	GT	3.682e^-4	0.718
3R	19036600	3R_19036600_SNP [dm3] 3R_23210878_SNP [dm6]	G	A	3.686e^-4	0.718	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	16753985	2L_16753985_SNP [dm3] 2L_16753985_SNP [dm6]	A	T	3.692e^-4	0.718	UPSTREAM yellow-b DOWNSTREAM CG17912 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	17127972	2L_17127972_SNP [dm3] 2L_17127972_SNP [dm6]	G	C	3.693e^-4	0.718	INTERGENIC
2L	2390350	2L_2390350_SNP [dm3] 2L_2390350_SNP [dm6]	C	T	3.701e^-4	0.718	NON_SYNONYMOUS_CODING CG43750
3R	18053397	3R_18053397_SNP [dm3] 3R_22227675_SNP [dm6]	C	A	3.702e^-4	0.718	INTRON SKIP
2L	17580144	2L_17580144_INS [dm3] 2L_17580144_INS [dm6]	T	AAAGTA	3.709e^-4	0.718	DOWNSTREAM CR45698 INTERGENIC
3R	18231468	3R_18231468_SNP [dm3] 3R_22405746_SNP [dm6]	A	T	3.709e^-4	0.718	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
X	11132721	X_11132721_SNP [dm3] X_11238688_SNP [dm6]	A	T	3.711e^-4	0.718	INTRON CG44422
3L	13323540	3L_13323540_SNP [dm3] 3L_13330440_SNP [dm6]	G	C	3.715e^-4	0.718	DOWNSTREAM CG14113 INTERGENIC
3R	23054530	3R_23054530_SNP [dm3] 3R_27228808_SNP [dm6]	G	C	3.716e^-4	0.718	NON_SYNONYMOUS_CODING CG42814 UPSTREAM CG42813 DOWNSTREAM CG31064	TF binding site mE1_TFBS_cad
3R	18400414	3R_18400414_SNP [dm3] 3R_22574692_SNP [dm6]	T	G	3.722e^-4	0.718	INTRON CG33110
3L	3802926	3L_3802926_DEL [dm3] 3L_3802926_DEL [dm6]	TT	T	3.726e^-4	0.718	DOWNSTREAM ntc INTRON CG32264
X	18534600	X_18534600_SNP [dm3] X_18640567_SNP [dm6]	T	A	3.729e^-4	0.718	INTRON Rip11
X	17183501	X_17183501_SNP [dm3] X_17289468_SNP [dm6]	T	C	3.731e^-4	0.718	INTRON CG5445 & 1 other
X	3141181	X_3141181_SNP [dm3] X_3247148_SNP [dm6]	C	A	3.737e^-4	0.718	INTRON dnc
3L	3793615	3L_3793615_SNP [dm3] 3L_3793615_SNP [dm6]	G	C	3.740e^-4	0.718	INTRON CG32264
X	8184605	X_8184605_INS [dm3] X_8290572_INS [dm6]	A	ATCAAAAAAA	3.741e^-4	0.718	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9288897	3L_9288897_SNP [dm3] 3L_9295797_SNP [dm6]	C	A	3.741e^-4	0.718	INTERGENIC
3L	12662340	3L_12662340_DEL [dm3] 3L_12669240_DEL [dm6]	TT	T	3.745e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21031062	3R_21031062_SNP [dm3] 3R_25205340_SNP [dm6]	C	G	3.746e^-4	0.718	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
2R	10431069	2R_10431069_SNP [dm3] 2R_14543564_SNP [dm6]	G	C	3.752e^-4	0.718	DOWNSTREAM CG30076 INTRON ttv
2L	17132575	2L_17132575_SNP [dm3] 2L_17132575_SNP [dm6]	A	T	3.752e^-4	0.718	INTRON beat-IIIa & 1 other
3L	15677525	3L_15677525_SNP [dm3] 3L_15684425_SNP [dm6]	T	A	3.755e^-4	0.718	UPSTREAM CG7579 INTRON pgant8
X	5586186	X_5586186_SNP [dm3] X_5692153_SNP [dm6]	C	T	3.756e^-4	0.718	UPSTREAM CR45525 DOWNSTREAM CG3149 INTRON cv	TF binding site mE1_TFBS_sens
3L	5427848	3L_5427848_SNP [dm3] 3L_5434748_SNP [dm6]	T	C	3.758e^-4	0.718	INTRON CG34391
2L	16743208	2L_16743208_SNP [dm3] 2L_16743208_SNP [dm6]	A	T	3.761e^-4	0.718	UPSTREAM CG17912 & 1 other DOWNSTREAM ChLD3 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12294255	2R_12294255_SNP [dm3] 2R_16406750_SNP [dm6]	T	A	3.763e^-4	0.718	INTRON Sema-2b
2L	3876635	2L_3876635_SNP [dm3] 2L_3876635_SNP [dm6]	C	T	3.764e^-4	0.718	INTRON capu
X	19617846	X_19617846_SNP [dm3] X_19723813_SNP [dm6]	T	C	3.770e^-4	0.718	SYNONYMOUS_CODING CG12531
2L	9293952	2L_9293952_SNP [dm3] 2L_9293952_SNP [dm6]	G	C	3.782e^-4	0.718	UTR_3_PRIME Ggamma30A DOWNSTREAM Ggamma30A
3R	22945176	3R_22945176_SNP [dm3] 3R_27119454_SNP [dm6]	A	C	3.789e^-4	0.718	SYNONYMOUS_CODING CG5882 DOWNSTREAM CG5880	TF binding site mE1_TFBS_cad
3L	21645724	3L_21645724_SNP [dm3] 3L_21652624_SNP [dm6]	G	A	3.790e^-4	0.718	INTRON CG43980	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	7563060	2R_7563060_SNP [dm3] 2R_11675555_SNP [dm6]	T	C	3.791e^-4	0.718	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2	TF binding site mE1_TFBS_HSA
2L	11168544	2L_11168544_SNP [dm3] 2L_11168544_SNP [dm6]	G	T	3.804e^-4	0.718	UPSTREAM Ca-beta INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4670608	2L_4670608_SNP [dm3] 2L_4670608_SNP [dm6]	T	G	3.804e^-4	0.718	INTERGENIC
3L	12181143	3L_12181143_SNP [dm3] 3L_12188043_SNP [dm6]	G	A	3.808e^-4	0.718	UPSTREAM Est-6 DOWNSTREAM CG6910 INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2L	7841338	2L_7841338_SNP [dm3] 2L_7841338_SNP [dm6]	C	A	3.813e^-4	0.718	UPSTREAM CR43100 DOWNSTREAM CG14537 INTERGENIC	TF binding site mE1_TFBS_cad
X	15776481	X_15776481_SNP [dm3] X_15882448_SNP [dm6]	C	T	3.815e^-4	0.718	SYNONYMOUS_CODING tay
2L	9432611	2L_9432611_SNP [dm3] 2L_9432611_SNP [dm6]	T	C	3.820e^-4	0.718	SYNONYMOUS_CODING scat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6941114	X_6941114_SNP [dm3] X_7047081_SNP [dm6]	C	T	3.828e^-4	0.718	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	7379925	3R_7379925_SNP [dm3] 3R_11554203_SNP [dm6]	T	G	3.832e^-4	0.718	NON_SYNONYMOUS_CODING CG14708
3R	7379926	3R_7379926_SNP [dm3] 3R_11554204_SNP [dm6]	T	A	3.832e^-4	0.718	NON_SYNONYMOUS_CODING CG14708
3R	15353114	3R_15353114_SNP [dm3] 3R_19527392_SNP [dm6]	T	G	3.839e^-4	0.718	INTRON Dys
2R	17282776	2R_17282776_SNP [dm3] 2R_21395271_SNP [dm6]	A	T	3.841e^-4	0.718	INTRON Sdc
2L	17765834	2L_17765834_SNP [dm3] 2L_17765834_SNP [dm6]	A	G	3.841e^-4	0.718	INTRON CadN
2L	7661378	2L_7661378_SNP [dm3] 2L_7661378_SNP [dm6]	G	T	3.844e^-4	0.718	INTRON Slob
3R	27111637	3R_27111637_SNP [dm3] 3R_31285915_SNP [dm6]	A	G	3.845e^-4	0.718	INTERGENIC
2R	10010517	2R_10010517_SNP [dm3] 2R_14123012_SNP [dm6]	G	A	3.847e^-4	0.718	INTRON Prosap	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3934330	2L_3934330_SNP [dm3] 2L_3934330_SNP [dm6]	T	A	3.853e^-4	0.718	INTRON fred
3R	14054524	3R_14054524_SNP [dm3] 3R_18228802_SNP [dm6]	A	G	3.854e^-4	0.718	DOWNSTREAM Mdh2 INTERGENIC
3R	27696467	3R_27696467_SNP [dm3] 3R_31870745_SNP [dm6]	C	G	3.862e^-4	0.718	INTRON heph	TF binding site BDTNP1_TFBS_twi
3L	6782215	3L_6782215_SNP [dm3] 3L_6789115_SNP [dm6]	T	C	3.863e^-4	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18231581	3R_18231581_SNP [dm3] 3R_22405859_SNP [dm6]	G	A	3.865e^-4	0.718	UPSTREAM CG13855 DOWNSTREAM CG13856 INTERGENIC
X	19357878	X_19357878_SNP [dm3] X_19463845_SNP [dm6]	C	T	3.875e^-4	0.718	INTRON kek5
3L	10560831	3L_10560831_SNP [dm3] 3L_10567731_SNP [dm6]	G	A	3.876e^-4	0.718	INTRON A2bp1
2L	6741087	2L_6741087_SNP [dm3] 2L_6741087_SNP [dm6]	T	C	3.877e^-4	0.718	UPSTREAM TTLL3A INTERGENIC
2L	11590527	2L_11590527_SNP [dm3] 2L_11590527_SNP [dm6]	A	G	3.884e^-4	0.718	DOWNSTREAM Acp33A INTRON kek2
3L	14591220	3L_14591220_SNP [dm3] 3L_14598120_SNP [dm6]	G	A	3.885e^-4	0.718	SYNONYMOUS_CODING HGTX	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	19572244	X_19572244_SNP [dm3] X_19678211_SNP [dm6]	C	G	3.888e^-4	0.718	INTRON dome	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15768017	3L_15768017_SNP [dm3] 3L_15774917_SNP [dm6]	G	T	3.894e^-4	0.718	INTERGENIC
3R	8967667	3R_8967667_SNP [dm3] 3R_13141945_SNP [dm6]	A	G	3.905e^-4	0.718	INTRON timeout & 2 others

By genomic position
Variant impact
Gene name

Baseline_mean phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results