DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.839e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.06135
In_3R_K	0.05809

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.0631	0.0795
In_3R_K	5.4456	0.0657

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1982 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12619896	3L_12619896_SNP [dm3] 3L_12626796_SNP [dm6]	C	T	1.816e^-7	0.341	INTERGENIC
3R	13938753	3R_13938753_SNP [dm3] 3R_18113031_SNP [dm6]	G	A	6.376e^-7	0.598	INTRON sr
2R	9007133	2R_9007133_SNP [dm3] 2R_13119628_SNP [dm6]	A	G	1.747e^-6	0.837	INTRON CG13325
2L	7816783	2L_7816783_SNP [dm3] 2L_7816783_SNP [dm6]	T	A	2.114e^-6	0.837	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16931850	3R_16931850_SNP [dm3] 3R_21106128_SNP [dm6]	C	T	2.232e^-6	0.837	SYNONYMOUS_CODING Sec15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13938851	3R_13938851_SNP [dm3] 3R_18113129_SNP [dm6]	G	C	3.998e^-6	0.865	INTRON sr
3R	21396404	3R_21396404_SNP [dm3] 3R_25570682_SNP [dm6]	C	G	4.155e^-6	0.865	INTRON msi
3R	16509727	3R_16509727_DEL [dm3] 3R_20684005_DEL [dm6]	GATGTATACCTAC...	G	4.796e^-6	0.865	INTERGENIC
3R	16509740	3R_16509740_INS [dm3] 3R_20684018_INS [dm6]	T	TCGCC	5.275e^-6	0.865	INTERGENIC
3L	1491853	3L_1491853_SNP [dm3] 3L_1491853_SNP [dm6]	T	C	5.278e^-6	0.865	SYNONYMOUS_CODING CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18941448	3L_18941448_DEL [dm3] 3L_18948348_DEL [dm6]	ACGTGA	A	5.460e^-6	0.865	INTERGENIC
3R	21385631	3R_21385631_SNP [dm3] 3R_25559909_SNP [dm6]	G	C	5.531e^-6	0.865	INTRON msi
3L	10214349	3L_10214349_SNP [dm3] 3L_10221249_SNP [dm6]	G	A	6.143e^-6	0.886	INTRON scramb1	TF binding site mE1_TFBS_cad
2R	15323078	2R_15323078_SNP [dm3] 2R_19435573_SNP [dm6]	T	G	7.581e^-6	0.896	INTRON Fak
2L	6132117	2L_6132117_SNP [dm3] 2L_6132117_SNP [dm6]	C	G	8.031e^-6	0.896	SYNONYMOUS_CODING CG9222
3L	1487330	3L_1487330_SNP [dm3] 3L_1487330_SNP [dm6]	T	G	9.887e^-6	0.896	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	16932511	3R_16932511_SNP [dm3] 3R_21106789_SNP [dm6]	T	C	1.142e^-5	0.896	SYNONYMOUS_CODING Sec15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8144884	2R_8144884_SNP [dm3] 2R_12257379_SNP [dm6]	A	G	1.180e^-5	0.896	NON_SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
2L	14618488	2L_14618488_SNP [dm3] 2L_14618488_SNP [dm6]	G	A	1.326e^-5	0.896	INTRON osp & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10550604	3L_10550604_SNP [dm3] 3L_10557504_SNP [dm6]	C	T	1.335e^-5	0.896	UTR_3_PRIME CG6527 DOWNSTREAM CG6527 INTRON A2bp1
3L	1487360	3L_1487360_SNP [dm3] 3L_1487360_SNP [dm6]	A	G	1.407e^-5	0.896	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	14832600	3L_14832600_SNP [dm3] 3L_14839500_SNP [dm6]	T	C	1.500e^-5	0.896	INTRON CG17839
3L	1487399	3L_1487399_SNP [dm3] 3L_1487399_SNP [dm6]	T	A	1.573e^-5	0.896	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14296716	3L_14296716_SNP [dm3] 3L_14303616_SNP [dm6]	T	A	1.577e^-5	0.896	INTRON fz
3L	4137240	3L_4137240_SNP [dm3] 3L_4137240_SNP [dm6]	G	T	1.720e^-5	0.896	SYNONYMOUS_CODING Rop	TF binding site mE1_TFBS_cad
3R	11351068	3R_11351068_SNP [dm3] 3R_15525346_SNP [dm6]	T	C	1.739e^-5	0.896	INTERGENIC
2L	14618486	2L_14618486_SNP [dm3] 2L_14618486_SNP [dm6]	A	C	1.829e^-5	0.896	INTRON osp & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1491811	3L_1491811_SNP [dm3] 3L_1491811_SNP [dm6]	A	G	1.852e^-5	0.896	SYNONYMOUS_CODING CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4232116	X_4232116_SNP [dm3] X_4338083_SNP [dm6]	G	C	1.865e^-5	0.896	INTRON norpA	TF binding site mE1_TFBS_inv
3L	17394270	3L_17394270_INS [dm3] 3L_17401170_INS [dm6]	G	GTG	1.902e^-5	0.896	FRAME_SHIFT noe INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	14072180	2R_14072180_SNP [dm3] 2R_18184675_SNP [dm6]	A	C	1.903e^-5	0.896	UTR_3_PRIME CG33958 UPSTREAM CG5721	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19098332	2R_19098332_SNP [dm3] 2R_23210809_SNP [dm6]	G	T	1.931e^-5	0.896	SYNONYMOUS_CODING LS2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16134041	3L_16134041_SNP [dm3] 3L_16140941_SNP [dm6]	A	T	1.939e^-5	0.896	SYNONYMOUS_CODING CG5151 UTR_3_PRIME CG32152	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8695055	2R_8695055_SNP [dm3] 2R_12807550_SNP [dm6]	T	C	1.944e^-5	0.896	UTR_3_PRIME CG17580
2R	16479327	2R_16479327_SNP [dm3] 2R_20591822_SNP [dm6]	G	A	1.964e^-5	0.896	INTRON bl	TF binding site BDTNP1_TFBS_dl
3R	25593455	3R_25593455_SNP [dm3] 3R_29767733_SNP [dm6]	T	C	1.976e^-5	0.896	INTRON kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	16032725	3R_16032725_SNP [dm3] 3R_20207003_SNP [dm6]	T	C	1.985e^-5	0.896	INTRON Nlg4
X	6786599	X_6786599_SNP [dm3] X_6892566_SNP [dm6]	C	A	2.047e^-5	0.896	INTERGENIC
3L	13749102	3L_13749102_SNP [dm3] 3L_13756002_SNP [dm6]	C	A	2.163e^-5	0.896	INTRON bru-3
3R	8910710	3R_8910710_SNP [dm3] 3R_13084988_SNP [dm6]	T	G	2.187e^-5	0.896	UPSTREAM CR44967 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8936884	3R_8936884_DEL [dm3] 3R_13111162_DEL [dm6]	AATCTTT	A	2.257e^-5	0.896	INTRON timeout
2R	14809602	2R_14809602_SNP [dm3] 2R_18922097_SNP [dm6]	A	C	2.319e^-5	0.896	INTRON sano
3L	1487129	3L_1487129_SNP [dm3] 3L_1487129_SNP [dm6]	T	C	2.320e^-5	0.896	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14618519	2L_14618519_SNP [dm3] 2L_14618519_SNP [dm6]	G	C	2.401e^-5	0.896	INTRON osp & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19673603	2R_19673603_SNP [dm3] 2R_23786080_SNP [dm6]	G	C	2.624e^-5	0.896	NON_SYNONYMOUS_CODING CG9850
3R	13932721	3R_13932721_DEL [dm3] 3R_18106999_DEL [dm6]	TTGATGT	T	2.648e^-5	0.896	INTRON sr
2R	15323061	2R_15323061_SNP [dm3] 2R_19435556_SNP [dm6]	T	G	2.667e^-5	0.896	SPLICE_SITE_REGION Fak INTRON Fak
X	19759438	X_19759438_SNP [dm3] X_19865405_SNP [dm6]	C	T	2.759e^-5	0.896	SYNONYMOUS_CODING CG15618 UPSTREAM Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h
3R	9535232	3R_9535232_SNP [dm3] 3R_13709510_SNP [dm6]	T	G	2.766e^-5	0.896	SYNONYMOUS_CODING CG31469 DOWNSTREAM primo-2 & 2 others
X	16736564	X_16736564_SNP [dm3] X_16842531_SNP [dm6]	C	T	2.820e^-5	0.896	INTRON RSG7	TF binding site mE1_TFBS_HSA
3R	26527426	3R_26527426_SNP [dm3] 3R_30701704_SNP [dm6]	G	C	2.832e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	8706545	X_8706545_SNP [dm3] X_8812512_SNP [dm6]	G	A	2.865e^-5	0.896	INTERGENIC
3R	13932708	3R_13932708_INS [dm3] 3R_18106986_INS [dm6]	T	TT	2.865e^-5	0.896	INTRON sr
3L	13173598	3L_13173598_SNP [dm3] 3L_13180498_SNP [dm6]	C	G	2.921e^-5	0.896	INTERGENIC
X	3418787	X_3418787_SNP [dm3] X_3524754_SNP [dm6]	C	G	2.939e^-5	0.896	INTRON CG32791
3R	13932740	3R_13932740_SNP [dm3] 3R_18107018_SNP [dm6]	T	A	2.960e^-5	0.896	INTRON sr
X	8706543	X_8706543_SNP [dm3] X_8812510_SNP [dm6]	A	T	3.008e^-5	0.896	INTERGENIC
3R	15179669	3R_15179669_SNP [dm3] 3R_19353947_SNP [dm6]	T	G	3.109e^-5	0.896	UPSTREAM CG43203 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3R	8910682	3R_8910682_SNP [dm3] 3R_13084960_SNP [dm6]	C	T	3.114e^-5	0.896	UPSTREAM CR44967 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12306040	3L_12306040_INS [dm3] 3L_12312940_INS [dm6]	T	TAAGGCT	3.153e^-5	0.896	DOWNSTREAM CG44355 INTERGENIC
3R	14302306	3R_14302306_SNP [dm3] 3R_18476584_SNP [dm6]	A	C	3.196e^-5	0.896	INTRON fru
2R	7068803	2R_7068803_SNP [dm3] 2R_11181298_SNP [dm6]	A	G	3.202e^-5	0.896	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14154104	2R_14154104_SNP [dm3] 2R_18266599_SNP [dm6]	C	A	3.206e^-5	0.896	INTERGENIC
X	8706283	X_8706283_DEL [dm3] X_8812250_DEL [dm6]	AAATAAAATGCAAATCCCAT...	T	3.231e^-5	0.896	INTERGENIC
3R	13932732	3R_13932732_SNP [dm3] 3R_18107010_SNP [dm6]	C	A	3.300e^-5	0.896	INTRON sr
3R	16032616	3R_16032616_SNP [dm3] 3R_20206894_SNP [dm6]	A	G	3.301e^-5	0.896	INTRON Nlg4	TF binding site mE1_TFBS_HSA
3L	1487346	3L_1487346_SNP [dm3] 3L_1487346_SNP [dm6]	G	A	3.399e^-5	0.896	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	11029888	2L_11029888_SNP [dm3] 2L_11029888_SNP [dm6]	T	C	3.422e^-5	0.896	INTRON Samuel	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13173586	3L_13173586_SNP [dm3] 3L_13180486_SNP [dm6]	C	T	3.427e^-5	0.896	INTERGENIC
3L	15167812	3L_15167812_SNP [dm3] 3L_15174712_SNP [dm6]	A	T	3.455e^-5	0.896	INTERGENIC
2L	1699738	2L_1699738_SNP [dm3] 2L_1699738_SNP [dm6]	A	C	3.561e^-5	0.896	UTR_3_PRIME chinmo
X	4776341	X_4776341_SNP [dm3] X_4882308_SNP [dm6]	G	T	3.628e^-5	0.896	INTRON CG42594
3L	10486666	3L_10486666_SNP [dm3] 3L_10493566_SNP [dm6]	C	G	3.693e^-5	0.896	DOWNSTREAM S-Lap4 INTRON A2bp1
3R	26457095	3R_26457095_SNP [dm3] 3R_30631373_SNP [dm6]	A	C	3.761e^-5	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
X	5940404	X_5940404_SNP [dm3] X_6046371_SNP [dm6]	C	T	3.767e^-5	0.896	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13932695	3R_13932695_SNP [dm3] 3R_18106973_SNP [dm6]	T	G	3.808e^-5	0.896	INTRON sr
2L	9403244	2L_9403244_SNP [dm3] 2L_9403244_SNP [dm6]	C	T	3.873e^-5	0.896	INTRON Shawl
2L	15345553	2L_15345553_SNP [dm3] 2L_15345553_SNP [dm6]	G	C	3.898e^-5	0.896	INTERGENIC
2R	970335	2R_970335_SNP [dm3] 2R_5082830_SNP [dm6]	C	G	4.022e^-5	0.896	UPSTREAM CR43360 INTERGENIC	TF binding site mE1_TFBS_cad
3L	20137488	3L_20137488_INS [dm3] 3L_20144388_INS [dm6]	T	TACGCAT	4.050e^-5	0.896	INTERGENIC
3L	4728801	3L_4728801_SNP [dm3] 3L_4728801_SNP [dm6]	A	G	4.159e^-5	0.896	INTRON RhoGEF64C
3L	7868454	3L_7868454_SNP [dm3] 3L_7875354_SNP [dm6]	C	A	4.223e^-5	0.896	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	20727551	3R_20727551_SNP [dm3] 3R_24901829_SNP [dm6]	C	T	4.247e^-5	0.896	SYNONYMOUS_CODING CG10845 INTRON CG13643	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14879030	3R_14879030_INS [dm3] 3R_19053308_INS [dm6]	T	TT	4.401e^-5	0.896	INTRON cdi
3L	4992385	3L_4992385_SNP [dm3] 3L_4992385_SNP [dm6]	C	A	4.433e^-5	0.896	INTRON Con	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	26457096	3R_26457096_SNP [dm3] 3R_30631374_SNP [dm6]	A	C	4.550e^-5	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12669883	2R_12669883_SNP [dm3] 2R_16782378_SNP [dm6]	A	T	4.550e^-5	0.896	SYNONYMOUS_CODING resilin	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14026871	3L_14026871_SNP [dm3] 3L_14033771_SNP [dm6]	T	G	4.565e^-5	0.896	SYNONYMOUS_CODING CG6650 DOWNSTREAM pncr014:3L	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18101867	3R_18101867_SNP [dm3] 3R_22276145_SNP [dm6]	C	T	4.568e^-5	0.896	INTRON SKIP
2L	12184287	2L_12184287_SNP [dm3] 2L_12184287_SNP [dm6]	C	T	4.632e^-5	0.896	INTRON aret
3R	15105031	3R_15105031_SNP [dm3] 3R_19279309_SNP [dm6]	C	A	4.647e^-5	0.896	INTRON CR44173
X	3724037	X_3724037_SNP [dm3] X_3830004_SNP [dm6]	C	T	4.653e^-5	0.896	SYNONYMOUS_CODING CG2901 INTRON ec	TF binding site mE1_TFBS_sens
3L	2246408	3L_2246408_SNP [dm3] 3L_2246408_SNP [dm6]	A	T	4.666e^-5	0.896	SYNONYMOUS_CODING CG32301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11350868	3R_11350868_DEL [dm3] 3R_15525146_DEL [dm6]	AA	A	4.667e^-5	0.896	INTERGENIC
2L	13267623	2L_13267623_SNP [dm3] 2L_13267623_SNP [dm6]	C	T	4.719e^-5	0.896	UTR_5_PRIME CG44085 INTRON CG44085
X	10223223	X_10223223_SNP [dm3] X_10329190_SNP [dm6]	A	C	4.836e^-5	0.896	SYNONYMOUS_CODING Gip DOWNSTREAM CG2909 & 1 other	TF binding site mE1_TFBS_HSA
2R	10517633	2R_10517633_SNP [dm3] 2R_14630128_SNP [dm6]	G	T	4.851e^-5	0.896	NON_SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7480660	2L_7480660_SNP [dm3] 2L_7480660_SNP [dm6]	A	T	4.864e^-5	0.896	SYNONYMOUS_CODING Ziz
2R	10517992	2R_10517992_SNP [dm3] 2R_14630487_SNP [dm6]	G	A	5.056e^-5	0.896	NON_SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15179663	3R_15179663_SNP [dm3] 3R_19353941_SNP [dm6]	A	T	5.227e^-5	0.896	UPSTREAM CG43203 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3R	8936880	3R_8936880_SNP [dm3] 3R_13111158_SNP [dm6]	A	C	5.250e^-5	0.896	INTRON timeout
X	8529228	X_8529228_SNP [dm3] X_8635195_SNP [dm6]	G	A	5.422e^-5	0.896	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5485031	X_5485031_SNP [dm3] X_5590998_SNP [dm6]	C	A	5.423e^-5	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17004373	2R_17004373_SNP [dm3] 2R_21116868_SNP [dm6]	T	G	5.438e^-5	0.896	INTRON ktub
2R	20454170	2R_20454170_SNP [dm3] 2R_24566647_SNP [dm6]	A	G	5.477e^-5	0.896	SYNONYMOUS_CODING uri	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18915838	2L_18915838_SNP [dm3] 2L_18915838_SNP [dm6]	C	G	5.521e^-5	0.896	DOWNSTREAM ssp3 INTERGENIC
3L	7872259	3L_7872259_SNP [dm3] 3L_7879159_SNP [dm6]	A	T	5.546e^-5	0.896	INTRON CG32365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18440014	3R_18440014_SNP [dm3] 3R_22614292_SNP [dm6]	G	A	5.625e^-5	0.896	SYNONYMOUS_CODING EF-G2 UPSTREAM CG31156	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16524126	2R_16524126_SNP [dm3] 2R_20636621_SNP [dm6]	C	T	5.741e^-5	0.896	SYNONYMOUS_CODING CG13436 INTRON rig
2R	974076	2R_974076_SNP [dm3] 2R_5086571_SNP [dm6]	A	T	5.769e^-5	0.896	INTERGENIC
3L	3791664	3L_3791664_SNP [dm3] 3L_3791664_SNP [dm6]	C	T	5.914e^-5	0.896	DOWNSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_HSA
2R	10465483	2R_10465483_SNP [dm3] 2R_14577978_SNP [dm6]	A	T	5.940e^-5	0.896	INTRON ttv
2L	2741437	2L_2741437_SNP [dm3] 2L_2741437_SNP [dm6]	G	T	6.202e^-5	0.896	NON_SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8653142	3L_8653142_SNP [dm3] 3L_8660042_SNP [dm6]	G	C	6.282e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10434329	3L_10434329_INS [dm3] 3L_10441229_INS [dm6]	T	TT	6.324e^-5	0.896	INTERGENIC
3L	11666360	3L_11666360_SNP [dm3] 3L_11673260_SNP [dm6]	T	G	6.339e^-5	0.896	INTRON CG32085
3R	8936948	3R_8936948_SNP [dm3] 3R_13111226_SNP [dm6]	T	C	6.361e^-5	0.896	INTRON timeout
X	5296111	X_5296111_SNP [dm3] X_5402078_SNP [dm6]	A	C	6.538e^-5	0.896	UTR_3_PRIME SK DOWNSTREAM SK INTRON SK
2L	11688712	2L_11688712_SNP [dm3] 2L_11688712_SNP [dm6]	G	A	6.572e^-5	0.896	INTERGENIC
3L	16331906	3L_16331906_SNP [dm3] 3L_16338806_SNP [dm6]	G	C	6.771e^-5	0.896	UPSTREAM CG4998 INTERGENIC
2L	14863040	2L_14863040_SNP [dm3] 2L_14863040_SNP [dm6]	C	T	6.773e^-5	0.896	INTERGENIC
2L	2741615	2L_2741615_SNP [dm3] 2L_2741615_SNP [dm6]	G	A	6.806e^-5	0.896	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16152324	X_16152324_SNP [dm3] X_16258291_SNP [dm6]	G	T	6.816e^-5	0.896	INTERGENIC
3R	21437226	3R_21437226_SNP [dm3] 3R_25611504_SNP [dm6]	G	A	6.848e^-5	0.896	INTRON Npl4
3R	25316928	3R_25316928_SNP [dm3] 3R_29491206_SNP [dm6]	T	C	6.883e^-5	0.896	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	11302622	3R_11302622_SNP [dm3] 3R_15476900_SNP [dm6]	C	G	6.887e^-5	0.896	UPSTREAM AdamTS-A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9197303	3R_9197303_SNP [dm3] 3R_13371581_SNP [dm6]	C	G	7.017e^-5	0.896	INTRON Lip3
2R	19098218	2R_19098218_SNP [dm3] 2R_23210695_SNP [dm6]	C	T	7.066e^-5	0.896	SYNONYMOUS_CODING LS2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10550667	3L_10550667_INS [dm3] 3L_10557567_INS [dm6]	G	GCCCCTTGG	7.099e^-5	0.896	UTR_3_PRIME CG6527 DOWNSTREAM CG6527 INTRON A2bp1
X	9224592	X_9224592_SNP [dm3] X_9330559_SNP [dm6]	T	C	7.114e^-5	0.896	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
3L	8653144	3L_8653144_SNP [dm3] 3L_8660044_SNP [dm6]	C	T	7.120e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13749109	3L_13749109_SNP [dm3] 3L_13756009_SNP [dm6]	G	T	7.172e^-5	0.896	INTRON bru-3
2R	4090553	2R_4090553_INS [dm3] 2R_8203048_INS [dm6]	A	AGA	7.184e^-5	0.896	INTRON LRP1
3L	3725685	3L_3725685_SNP [dm3] 3L_3725685_SNP [dm6]	T	C	7.242e^-5	0.896	INTRON CG32264
2L	8467602	2L_8467602_SNP [dm3] 2L_8467602_SNP [dm6]	T	G	7.407e^-5	0.896	DOWNSTREAM fu2 INTRON d	TF binding site mE1_TFBS_Kr
3L	18881705	3L_18881705_SNP [dm3] 3L_18888605_SNP [dm6]	C	T	7.442e^-5	0.896	INTRON CG3961
2R	17581868	2R_17581868_SNP [dm3] 2R_21694363_SNP [dm6]	A	G	7.460e^-5	0.896	SPLICE_SITE_REGION CngB INTRON CngB	TF binding site mE1_TFBS_cad
3L	15624793	3L_15624793_SNP [dm3] 3L_15631693_SNP [dm6]	C	G	7.469e^-5	0.896	INTRON comm3
3R	16942193	3R_16942193_SNP [dm3] 3R_21116471_SNP [dm6]	T	C	7.524e^-5	0.896	SYNONYMOUS_CODING ppan DOWNSTREAM Rab11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5485043	X_5485043_SNP [dm3] X_5591010_SNP [dm6]	T	C	7.590e^-5	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	974086	2R_974086_INS [dm3] 2R_5086581_INS [dm6]	A	AGGTTAA	7.610e^-5	0.896	INTERGENIC
X	9223498	X_9223498_SNP [dm3] X_9329465_SNP [dm6]	G	A	7.782e^-5	0.896	SYNONYMOUS_CODING CG34450 INTRON CG34449
3L	6046420	3L_6046420_SNP [dm3] 3L_6053320_SNP [dm6]	T	A	7.838e^-5	0.896	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
3R	13951978	3R_13951978_SNP [dm3] 3R_18126256_SNP [dm6]	A	C	7.907e^-5	0.896	INTRON sr	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22621772	3R_22621772_DEL [dm3] 3R_26796050_DEL [dm6]	TAAGATATCTAC...	T	7.962e^-5	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13932741	3R_13932741_SNP [dm3] 3R_18107019_SNP [dm6]	C	T	8.001e^-5	0.896	INTRON sr
2R	16479305	2R_16479305_SNP [dm3] 2R_20591800_SNP [dm6]	C	G	8.012e^-5	0.896	INTRON bl	TF binding site BDTNP1_TFBS_dl
3L	10981035	3L_10981035_SNP [dm3] 3L_10987935_SNP [dm6]	G	A	8.024e^-5	0.896	INTRON klu
2R	20453789	2R_20453789_SNP [dm3] 2R_24566266_SNP [dm6]	T	G	8.044e^-5	0.896	SYNONYMOUS_CODING uri	TF binding site mE1_TFBS_sens
X	8426969	X_8426969_SNP [dm3] X_8532936_SNP [dm6]	C	G	8.054e^-5	0.896	INTRON Nrg
X	2622489	X_2622489_SNP [dm3] X_2728456_SNP [dm6]	C	A	8.059e^-5	0.896	DOWNSTREAM CG2709 INTRON dwg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	3983143	2R_3983143_SNP [dm3] 2R_8095638_SNP [dm6]	A	G	8.225e^-5	0.896	SYNONYMOUS_CODING CG8713	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4992590	3L_4992590_SNP [dm3] 3L_4992590_SNP [dm6]	C	T	8.242e^-5	0.896	INTRON Con
X	3418807	X_3418807_SNP [dm3] X_3524774_SNP [dm6]	C	A	8.328e^-5	0.896	INTRON CG32791
2R	974071	2R_974071_MNP [dm3] 2R_5086566_MNP [dm6]	ATTG	TAAC	8.413e^-5	0.896	INTERGENIC
2R	974080	2R_974080_INS [dm3] 2R_5086575_INS [dm6]	C	CTTAA	8.413e^-5	0.896	INTERGENIC
3R	26130112	3R_26130112_SNP [dm3] 3R_30304390_SNP [dm6]	G	C	8.434e^-5	0.896	INTRON hdc
X	12500283	X_12500283_SNP [dm3] X_12606250_SNP [dm6]	A	T	8.491e^-5	0.896	NON_SYNONYMOUS_CODING Sec16 INTRON Sec16	TF binding site mE1_TFBS_cad
3R	11422633	3R_11422633_SNP [dm3] 3R_15596911_SNP [dm6]	G	A	8.586e^-5	0.896	INTERGENIC
3L	11375305	3L_11375305_SNP [dm3] 3L_11382205_SNP [dm6]	G	A	8.589e^-5	0.896	DOWNSTREAM CR42755 INTERGENIC
2R	10530624	2R_10530624_SNP [dm3] 2R_14643119_SNP [dm6]	T	C	8.627e^-5	0.896	INTERGENIC
2R	12432555	2R_12432555_SNP [dm3] 2R_16545050_SNP [dm6]	G	A	8.631e^-5	0.896	INTERGENIC
3R	12492065	3R_12492065_SNP [dm3] 3R_16666343_SNP [dm6]	C	A	8.634e^-5	0.896	INTRON Ubx
3L	14252465	3L_14252465_SNP [dm3] 3L_14259365_SNP [dm6]	G	A	8.665e^-5	0.896	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14809721	2R_14809721_SNP [dm3] 2R_18922216_SNP [dm6]	C	G	8.718e^-5	0.896	INTRON sano
3R	15041597	3R_15041597_SNP [dm3] 3R_19215875_SNP [dm6]	T	A	8.755e^-5	0.896	UTR_3_PRIME vib DOWNSTREAM cry
3R	21385713	3R_21385713_SNP [dm3] 3R_25559991_SNP [dm6]	A	C	9.093e^-5	0.896	INTRON msi
X	9224573	X_9224573_SNP [dm3] X_9330540_SNP [dm6]	A	C	9.098e^-5	0.896	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
3R	17806089	3R_17806089_SNP [dm3] 3R_21980367_SNP [dm6]	G	A	9.100e^-5	0.896	INTRON Eip93F
3L	5505206	3L_5505206_SNP [dm3] 3L_5512106_SNP [dm6]	A	G	9.166e^-5	0.896	DOWNSTREAM Lkr INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3R	16942175	3R_16942175_SNP [dm3] 3R_21116453_SNP [dm6]	C	T	9.176e^-5	0.896	SYNONYMOUS_CODING ppan DOWNSTREAM Rab11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12421325	2R_12421325_SNP [dm3] 2R_16533820_SNP [dm6]	G	C	9.207e^-5	0.896	DOWNSTREAM Sema-2a INTERGENIC
3L	1880846	3L_1880846_SNP [dm3] 3L_1880846_SNP [dm6]	G	A	9.249e^-5	0.896	INTRON CG13937	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15178502	3R_15178502_SNP [dm3] 3R_19352780_SNP [dm6]	T	A	9.285e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Kr
X	5903081	X_5903081_SNP [dm3] X_6009048_SNP [dm6]	G	A	9.322e^-5	0.896	SYNONYMOUS_CODING mab-21
X	3893103	X_3893103_SNP [dm3] X_3999070_SNP [dm6]	A	G	9.557e^-5	0.896	INTERGENIC
3L	18736058	3L_18736058_SNP [dm3] 3L_18742958_SNP [dm6]	C	A	9.565e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	15771325	3R_15771325_SNP [dm3] 3R_19945603_SNP [dm6]	T	C	9.628e^-5	0.896	INTRON Hs6st
3L	16143849	3L_16143849_SNP [dm3] 3L_16150749_SNP [dm6]	C	T	9.630e^-5	0.896	INTRON CG5151
3L	18941475	3L_18941475_SNP [dm3] 3L_18948375_SNP [dm6]	C	A	9.658e^-5	0.896	INTERGENIC
2R	14071930	2R_14071930_SNP [dm3] 2R_18184425_SNP [dm6]	G	T	9.699e^-5	0.896	UTR_3_PRIME CG33958 UPSTREAM CG5721	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14969067	3R_14969067_SNP [dm3] 3R_19143345_SNP [dm6]	C	A	9.727e^-5	0.896	INTRON Ppcs
3L	1491932	3L_1491932_SNP [dm3] 3L_1491932_SNP [dm6]	C	T	9.763e^-5	0.896	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8936754	3R_8936754_SNP [dm3] 3R_13111032_SNP [dm6]	A	G	9.771e^-5	0.896	INTRON timeout
2R	16479269	2R_16479269_SNP [dm3] 2R_20591764_SNP [dm6]	G	A	9.791e^-5	0.896	INTRON bl	TF binding site BDTNP1_TFBS_dl
3R	21368452	3R_21368452_SNP [dm3] 3R_25542730_SNP [dm6]	C	A	9.822e^-5	0.896	INTRON msi
3R	16033021	3R_16033021_SNP [dm3] 3R_20207299_SNP [dm6]	C	T	9.833e^-5	0.896	DOWNSTREAM CG17199 INTRON Nlg4
2R	16479279	2R_16479279_SNP [dm3] 2R_20591774_SNP [dm6]	C	A	9.920e^-5	0.896	INTRON bl	TF binding site BDTNP1_TFBS_dl
X	14133182	X_14133182_SNP [dm3] X_14239149_SNP [dm6]	C	T	1.005e^-4	0.896	SYNONYMOUS_CODING CG1434	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23284778	3R_23284778_SNP [dm3] 3R_27459056_SNP [dm6]	C	A	1.005e^-4	0.896	INTERGENIC
3L	6562913	3L_6562913_SNP [dm3] 3L_6569813_SNP [dm6]	G	A	1.010e^-4	0.896	INTRON CG18769 & 1 other
X	771004	X_771004_SNP [dm3] X_876971_SNP [dm6]	T	A	1.014e^-4	0.896	DOWNSTREAM CG11664 INTRON CG43867
2R	7670229	2R_7670229_SNP [dm3] 2R_11782724_SNP [dm6]	C	T	1.015e^-4	0.896	INTRON ths
X	4338765	X_4338765_SNP [dm3] X_4444732_SNP [dm6]	T	A	1.015e^-4	0.896	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	9017113	2R_9017113_SNP [dm3] 2R_13129608_SNP [dm6]	G	A	1.016e^-4	0.896	SYNONYMOUS_CODING CG13326 UPSTREAM CG3955	TF binding site mE1_TFBS_cad
3L	12381120	3L_12381120_SNP [dm3] 3L_12388020_SNP [dm6]	C	T	1.016e^-4	0.896	UPSTREAM Ncc69 INTRON Ncc69
3R	11351215	3R_11351215_SNP [dm3] 3R_15525493_SNP [dm6]	C	T	1.019e^-4	0.896	INTERGENIC
3L	1367983	3L_1367983_SNP [dm3] 3L_1367983_SNP [dm6]	G	A	1.020e^-4	0.896	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14807541	3L_14807541_SNP [dm3] 3L_14814441_SNP [dm6]	A	G	1.022e^-4	0.896	INTRON CG17839
3R	17064071	3R_17064071_SNP [dm3] 3R_21238349_SNP [dm6]	A	G	1.026e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
2L	6373216	2L_6373216_SNP [dm3] 2L_6373216_SNP [dm6]	G	T	1.028e^-4	0.896	UPSTREAM slam INTRON slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	975884	2R_975884_SNP [dm3] 2R_5088379_SNP [dm6]	G	A	1.035e^-4	0.896	INTERGENIC	transposable element FlyBase
3R	1100911	3R_1100911_SNP [dm3] 3R_5275189_SNP [dm6]	C	T	1.040e^-4	0.896	DOWNSTREAM CG31538 INTRON mtd
3L	19345137	3L_19345137_SNP [dm3] 3L_19352037_SNP [dm6]	C	T	1.041e^-4	0.896	INTRON CG32206
3L	12308723	3L_12308723_SNP [dm3] 3L_12315623_SNP [dm6]	G	C	1.049e^-4	0.896	INTERGENIC
3R	22299435	3R_22299435_SNP [dm3] 3R_26473713_SNP [dm6]	G	A	1.052e^-4	0.896	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_chinmo
X	5296114	X_5296114_SNP [dm3] X_5402081_SNP [dm6]	A	T	1.056e^-4	0.896	UTR_3_PRIME SK DOWNSTREAM SK INTRON SK
2R	9007117	2R_9007117_SNP [dm3] 2R_13119612_SNP [dm6]	G	T	1.065e^-4	0.896	INTRON CG13325
2L	8442795	2L_8442795_SNP [dm3] 2L_8442795_SNP [dm6]	A	C	1.070e^-4	0.896	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM mus201
3R	11350916	3R_11350916_SNP [dm3] 3R_15525194_SNP [dm6]	C	T	1.073e^-4	0.896	INTERGENIC
X	9223510	X_9223510_SNP [dm3] X_9329477_SNP [dm6]	G	A	1.091e^-4	0.896	SYNONYMOUS_CODING CG34450 INTRON CG34449
2R	12423925	2R_12423925_SNP [dm3] 2R_16536420_SNP [dm6]	C	T	1.091e^-4	0.896	SYNONYMOUS_CODING loopin-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4886287	3L_4886287_SNP [dm3] 3L_4886287_SNP [dm6]	C	A	1.092e^-4	0.896	INTRON CG17150
X	2362718	X_2362718_SNP [dm3] X_2468685_SNP [dm6]	A	G	1.094e^-4	0.896	INTRON boi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14590221	3L_14590221_SNP [dm3] 3L_14597121_SNP [dm6]	G	C	1.095e^-4	0.896	INTRON HGTX
X	9224569	X_9224569_INS [dm3] X_9330536_INS [dm6]	C	CTTTGTGTGTAGGAC...	1.095e^-4	0.896	UPSTREAM CG34450 DOWNSTREAM CG34449 INTRON CG34449
X	5940380	X_5940380_SNP [dm3] X_6046347_SNP [dm6]	A	G	1.097e^-4	0.896	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22616141	3R_22616141_SNP [dm3] 3R_26790419_SNP [dm6]	G	A	1.097e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	19840511	3R_19840511_SNP [dm3] 3R_24014789_SNP [dm6]	G	A	1.101e^-4	0.896	INTRON KrT95D
3R	15177831	3R_15177831_SNP [dm3] 3R_19352109_SNP [dm6]	C	A	1.101e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens
3L	16130048	3L_16130048_SNP [dm3] 3L_16136948_SNP [dm6]	C	T	1.106e^-4	0.896	SYNONYMOUS_CODING CG5157 DOWNSTREAM CG16838 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8141140	2L_8141140_SNP [dm3] 2L_8141140_SNP [dm6]	A	G	1.112e^-4	0.896	DOWNSTREAM mir-4984 INTRON CG8552
3L	10509564	3L_10509564_SNP [dm3] 3L_10516464_SNP [dm6]	C	G	1.119e^-4	0.896	INTRON A2bp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	14822911	2R_14822911_SNP [dm3] 2R_18935406_SNP [dm6]	C	A	1.132e^-4	0.896	INTRON sano
X	12500284	X_12500284_SNP [dm3] X_12606251_SNP [dm6]	C	T	1.135e^-4	0.896	NON_SYNONYMOUS_CODING Sec16 INTRON Sec16	TF binding site mE1_TFBS_cad
3R	10528171	3R_10528171_SNP [dm3] 3R_14702449_SNP [dm6]	C	G	1.137e^-4	0.896	SYNONYMOUS_CODING kibra	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	11369599	X_11369599_SNP [dm3] X_11475566_SNP [dm6]	T	A	1.143e^-4	0.896	INTRON CG43155
2R	12432575	2R_12432575_SNP [dm3] 2R_16545070_SNP [dm6]	T	C	1.164e^-4	0.896	INTERGENIC
3R	11422625	3R_11422625_SNP [dm3] 3R_15596903_SNP [dm6]	G	A	1.172e^-4	0.896	INTERGENIC
3L	17387495	3L_17387495_SNP [dm3] 3L_17394395_SNP [dm6]	G	A	1.199e^-4	0.896	INTERGENIC
X	10223193	X_10223193_SNP [dm3] X_10329160_SNP [dm6]	C	G	1.202e^-4	0.896	SYNONYMOUS_CODING Gip DOWNSTREAM CG2909 & 1 other
3R	13890781	3R_13890781_SNP [dm3] 3R_18065059_SNP [dm6]	C	T	1.216e^-4	0.896	INTERGENIC
2L	10148587	2L_10148587_SNP [dm3] 2L_10148587_SNP [dm6]	G	A	1.216e^-4	0.896	INTRON CG44153 & 1 other
2R	3577379	2R_3577379_SNP [dm3] 2R_7689874_SNP [dm6]	C	A	1.220e^-4	0.896	INTRON CG1399
2R	19639709	2R_19639709_SNP [dm3] 2R_23752186_SNP [dm6]	T	G	1.223e^-4	0.896	NON_SYNONYMOUS_CODING CG11300 UPSTREAM CG5532 DOWNSTREAM CG12491	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	17636101	3L_17636101_SNP [dm3] 3L_17643001_SNP [dm6]	G	T	1.226e^-4	0.896	INTRON Pep	TF binding site BDTNP1_TFBS_dl
2L	6954122	2L_6954122_SNP [dm3] 2L_6954122_SNP [dm6]	G	A	1.226e^-4	0.896	SYNONYMOUS_CODING SA DOWNSTREAM CG13775
3R	23604595	3R_23604595_SNP [dm3] 3R_27778873_SNP [dm6]	T	C	1.228e^-4	0.896	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2R	12668615	2R_12668615_SNP [dm3] 2R_16781110_SNP [dm6]	G	C	1.231e^-4	0.896	NON_SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	11352494	3R_11352494_SNP [dm3] 3R_15526772_SNP [dm6]	G	C	1.235e^-4	0.896	INTERGENIC
3R	23252579	3R_23252579_SNP [dm3] 3R_27426857_SNP [dm6]	T	A	1.243e^-4	0.896	INTRON side
2R	974106	2R_974106_DEL [dm3] 2R_5086601_DEL [dm6]	AATAACCA	A	1.248e^-4	0.896	INTERGENIC
X	5485007	X_5485007_SNP [dm3] X_5590974_SNP [dm6]	T	C	1.260e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5485061	X_5485061_SNP [dm3] X_5591028_SNP [dm6]	A	T	1.260e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17843032	2L_17843032_SNP [dm3] 2L_17843032_SNP [dm6]	T	G	1.266e^-4	0.896	INTRON CadN2
3R	25761665	3R_25761665_SNP [dm3] 3R_29935943_SNP [dm6]	G	A	1.267e^-4	0.896	UPSTREAM CG15523 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	14814864	2R_14814864_SNP [dm3] 2R_18927359_SNP [dm6]	G	A	1.275e^-4	0.896	INTRON sano
3L	9444024	3L_9444024_SNP [dm3] 3L_9450924_SNP [dm6]	A	C	1.279e^-4	0.896	NON_SYNONYMOUS_CODING CG3448 UPSTREAM ghi DOWNSTREAM CG3529
X	12500307	X_12500307_SNP [dm3] X_12606274_SNP [dm6]	G	T	1.282e^-4	0.896	NON_SYNONYMOUS_CODING Sec16 INTRON Sec16	TF binding site mE1_TFBS_cad
3R	13458063	3R_13458063_SNP [dm3] 3R_17632341_SNP [dm6]	T	C	1.288e^-4	0.896	DOWNSTREAM tRNA:CR31573 INTRON CG43175
2R	9051161	2R_9051161_SNP [dm3] 2R_13163656_SNP [dm6]	T	A	1.289e^-4	0.896	NON_SYNONYMOUS_CODING CG15870 DOWNSTREAM GLaz & 1 other
3L	6118686	3L_6118686_SNP [dm3] 3L_6125586_SNP [dm6]	G	T	1.290e^-4	0.896	NON_SYNONYMOUS_CODING l_3_mbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6822182	2R_6822182_SNP [dm3] 2R_10934677_SNP [dm6]	T	C	1.291e^-4	0.896	INTERGENIC
2R	16243024	2R_16243024_INS [dm3] 2R_20355519_INS [dm6]	T	TGAAGAC	1.294e^-4	0.896	UPSTREAM CG11192 INTERGENIC
X	12500299	X_12500299_SNP [dm3] X_12606266_SNP [dm6]	T	C	1.324e^-4	0.896	NON_SYNONYMOUS_CODING Sec16 INTRON Sec16	TF binding site mE1_TFBS_cad
3L	1491941	3L_1491941_SNP [dm3] 3L_1491941_SNP [dm6]	G	A	1.332e^-4	0.896	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15111937	2R_15111937_SNP [dm3] 2R_19224432_SNP [dm6]	T	C	1.336e^-4	0.896	INTRON hppy	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	973705	2R_973705_SNP [dm3] 2R_5086200_SNP [dm6]	T	A	1.345e^-4	0.896	INTERGENIC
2R	16243020	2R_16243020_DEL [dm3] 2R_20355515_DEL [dm6]	GGTC	G	1.347e^-4	0.896	UPSTREAM CG11192 INTERGENIC
3L	1491945	3L_1491945_SNP [dm3] 3L_1491945_SNP [dm6]	A	T	1.350e^-4	0.896	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	21892740	3R_21892740_SNP [dm3] 3R_26067018_SNP [dm6]	T	C	1.364e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	10560440	2R_10560440_SNP [dm3] 2R_14672935_SNP [dm6]	T	G	1.365e^-4	0.896	NON_SYNONYMOUS_CODING mspo
X	19252806	X_19252806_SNP [dm3] X_19358773_SNP [dm6]	A	G	1.366e^-4	0.896	INTRON kek5	TF binding site BDTNP1_TFBS_dl
2R	16376490	2R_16376490_SNP [dm3] 2R_20488985_SNP [dm6]	G	T	1.378e^-4	0.896	INTERGENIC
3L	3985966	3L_3985966_SNP [dm3] 3L_3985966_SNP [dm6]	G	T	1.388e^-4	0.896	INTRON scrt
3R	11531991	3R_11531991_SNP [dm3] 3R_15706269_SNP [dm6]	G	A	1.390e^-4	0.896	SYNONYMOUS_CODING CG5404
2L	5242837	2L_5242837_SNP [dm3] 2L_5242837_SNP [dm6]	A	G	1.391e^-4	0.896	UPSTREAM tkv INTRON tkv EXON CR14033	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12498671	X_12498671_SNP [dm3] X_12604638_SNP [dm6]	G	C	1.392e^-4	0.896	INTRON Sec16	TF binding site mE1_TFBS_cad
2R	9472674	2R_9472674_SNP [dm3] 2R_13585169_SNP [dm6]	G	C	1.403e^-4	0.896	INTRON CG6191 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk mE1_TFBS_zfh1
3R	21408315	3R_21408315_SNP [dm3] 3R_25582593_SNP [dm6]	G	T	1.403e^-4	0.896	SYNONYMOUS_CODING CG4582 INTRON msi	TF binding site mE1_TFBS_cad
3L	15626504	3L_15626504_SNP [dm3] 3L_15633404_SNP [dm6]	C	A	1.406e^-4	0.896	UPSTREAM comm3 INTRON comm3
X	2866409	X_2866409_SNP [dm3] X_2972376_SNP [dm6]	T	A	1.422e^-4	0.896	INTRON kirre & 1 other
X	8706238	X_8706238_SNP [dm3] X_8812205_SNP [dm6]	T	A	1.422e^-4	0.896	INTERGENIC
2L	17837908	2L_17837908_SNP [dm3] 2L_17837908_SNP [dm6]	G	A	1.425e^-4	0.896	INTRON CadN2
2L	19682460	2L_19682460_SNP [dm3] 2L_19682460_SNP [dm6]	G	T	1.426e^-4	0.896	INTRON Lar
2L	12687113	2L_12687113_SNP [dm3] 2L_12687113_SNP [dm6]	C	T	1.431e^-4	0.896	DOWNSTREAM pdm2 INTERGENIC
3R	10427382	3R_10427382_SNP [dm3] 3R_14601660_SNP [dm6]	C	G	1.437e^-4	0.896	UPSTREAM stumps INTRON stumps
X	2362858	X_2362858_SNP [dm3] X_2468825_SNP [dm6]	T	A	1.438e^-4	0.896	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16523408	2R_16523408_SNP [dm3] 2R_20635903_SNP [dm6]	C	T	1.439e^-4	0.896	SYNONYMOUS_CODING rig UPSTREAM CG13436	TF binding site mE1_TFBS_cad
3L	6046391	3L_6046391_SNP [dm3] 3L_6053291_SNP [dm6]	A	C	1.441e^-4	0.896	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
3R	16920342	3R_16920342_SNP [dm3] 3R_21094620_SNP [dm6]	G	A	1.442e^-4	0.896	UPSTREAM CR44178 INTRON RhoGAP93B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8348938	2R_8348938_SNP [dm3] 2R_12461433_SNP [dm6]	C	A	1.445e^-4	0.896	INTRON Lac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	15105065	3R_15105065_SNP [dm3] 3R_19279343_SNP [dm6]	T	C	1.455e^-4	0.896	EXON CR44173
3L	13296296	3L_13296296_SNP [dm3] 3L_13303196_SNP [dm6]	C	T	1.459e^-4	0.896	UPSTREAM CR44555 & 1 other DOWNSTREAM CR43911 INTERGENIC
3R	21399108	3R_21399108_SNP [dm3] 3R_25573386_SNP [dm6]	C	A	1.461e^-4	0.896	INTRON msi
3R	19739446	3R_19739446_SNP [dm3] 3R_23913724_SNP [dm6]	T	C	1.464e^-4	0.896	INTRON sba	TF binding site mE1_TFBS_Kr
X	3217785	X_3217785_SNP [dm3] X_3323752_SNP [dm6]	G	A	1.469e^-4	0.896	INTRON CR44886 & 1 other
3R	25461467	3R_25461467_SNP [dm3] 3R_29635745_SNP [dm6]	T	A	1.478e^-4	0.896	INTRON Dop1R2
2R	12875522	2R_12875522_DEL [dm3] 2R_16988017_DEL [dm6]	TGT	T	1.484e^-4	0.896	INTRON Cbp53E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25469284	3R_25469284_SNP [dm3] 3R_29643562_SNP [dm6]	T	C	1.489e^-4	0.896	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3R	19552106	3R_19552106_SNP [dm3] 3R_23726384_SNP [dm6]	G	T	1.502e^-4	0.896	INTRON CG10365
3R	21179650	3R_21179650_SNP [dm3] 3R_25353928_SNP [dm6]	G	C	1.504e^-4	0.896	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18694356	3R_18694356_SNP [dm3] 3R_22868634_SNP [dm6]	C	T	1.509e^-4	0.896	INTERGENIC
2R	17004378	2R_17004378_SNP [dm3] 2R_21116873_SNP [dm6]	A	T	1.527e^-4	0.896	INTRON ktub
2L	14515681	2L_14515681_SNP [dm3] 2L_14515681_SNP [dm6]	T	C	1.528e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12354419	2L_12354419_SNP [dm3] 2L_12354419_SNP [dm6]	C	A	1.532e^-4	0.896	INTRON bru-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15771682	3R_15771682_SNP [dm3] 3R_19945960_SNP [dm6]	T	A	1.534e^-4	0.896	INTRON Hs6st
2R	9119984	2R_9119984_SNP [dm3] 2R_13232479_SNP [dm6]	C	T	1.539e^-4	0.896	SYNONYMOUS_CODING CG4670 DOWNSTREAM fsd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	12674262	2R_12674262_INS [dm3] 2R_16786757_INS [dm6]	G	GTATG	1.549e^-4	0.896	UPSTREAM CG5522 INTRON CG5522	TF binding site BDTNP1_TFBS_dl
2R	12432577	2R_12432577_SNP [dm3] 2R_16545072_SNP [dm6]	A	C	1.551e^-4	0.896	INTERGENIC
3L	1386805	3L_1386805_SNP [dm3] 3L_1386805_SNP [dm6]	G	C	1.552e^-4	0.896	SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3R	4942981	3R_4942981_SNP [dm3] 3R_9117259_SNP [dm6]	T	C	1.559e^-4	0.896	INTRON pum
2L	10089214	2L_10089214_SNP [dm3] 2L_10089214_SNP [dm6]	G	T	1.578e^-4	0.896	INTRON CG44153
3R	10332678	3R_10332678_SNP [dm3] 3R_14506956_SNP [dm6]	G	A	1.578e^-4	0.896	INTRON CR44177
3R	21399103	3R_21399103_SNP [dm3] 3R_25573381_SNP [dm6]	A	T	1.582e^-4	0.896	INTRON msi
2R	975255	2R_975255_SNP [dm3] 2R_5087750_SNP [dm6]	G	T	1.586e^-4	0.896	INTERGENIC	transposable element FlyBase
3L	13173614	3L_13173614_SNP [dm3] 3L_13180514_SNP [dm6]	C	A	1.589e^-4	0.896	INTERGENIC
2L	2099595	2L_2099595_SNP [dm3] 2L_2099595_SNP [dm6]	G	A	1.590e^-4	0.896	INTRON dpr3
3R	16903832	3R_16903832_SNP [dm3] 3R_21078110_SNP [dm6]	C	T	1.603e^-4	0.896	INTRON HHEX
3L	1276344	3L_1276344_SNP [dm3] 3L_1276344_SNP [dm6]	G	C	1.609e^-4	0.896	INTRON CG32333
3L	12324637	3L_12324637_SNP [dm3] 3L_12331537_SNP [dm6]	A	G	1.634e^-4	0.896	INTRON CG32105	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21399136	3R_21399136_SNP [dm3] 3R_25573414_SNP [dm6]	A	G	1.649e^-4	0.896	INTRON msi
2R	19742104	2R_19742104_SNP [dm3] 2R_23854581_SNP [dm6]	G	A	1.657e^-4	0.896	SYNONYMOUS_CODING bgcn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8955573	X_8955573_SNP [dm3] X_9061540_SNP [dm6]	A	G	1.660e^-4	0.896	UPSTREAM CG15365 INTRON CG15365
2L	19892552	2L_19892552_SNP [dm3] 2L_19892552_SNP [dm6]	C	A	1.662e^-4	0.896	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4623216	X_4623216_INS [dm3] X_4729183_INS [dm6]	G	GTTCGGAGTTGGGAG...	1.669e^-4	0.896	UTR_3_PRIME Proc-R DOWNSTREAM Proc-R
3R	17219552	3R_17219552_SNP [dm3] 3R_21393830_SNP [dm6]	C	T	1.670e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9145702	2R_9145702_SNP [dm3] 2R_13258197_SNP [dm6]	A	C	1.673e^-4	0.896	NON_SYNONYMOUS_CODING CG10799 DOWNSTREAM CG4716
2R	16479289	2R_16479289_SNP [dm3] 2R_20591784_SNP [dm6]	A	C	1.680e^-4	0.896	INTRON bl	TF binding site BDTNP1_TFBS_dl
3L	16146471	3L_16146471_SNP [dm3] 3L_16153371_SNP [dm6]	T	C	1.682e^-4	0.896	INTRON CG5151
3R	21385524	3R_21385524_SNP [dm3] 3R_25559802_SNP [dm6]	G	A	1.683e^-4	0.896	INTRON msi
3R	4024183	3R_4024183_SNP [dm3] 3R_8198461_SNP [dm6]	A	G	1.683e^-4	0.896	UPSTREAM CR43302 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
2L	8142437	2L_8142437_SNP [dm3] 2L_8142437_SNP [dm6]	A	C	1.704e^-4	0.896	UPSTREAM mir-4984 DOWNSTREAM CG42762 INTRON CG8552
2R	8432371	2R_8432371_SNP [dm3] 2R_12544866_SNP [dm6]	A	G	1.704e^-4	0.896	UPSTREAM CG33752 INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12498623	X_12498623_SNP [dm3] X_12604590_SNP [dm6]	A	G	1.705e^-4	0.896	SPLICE_SITE_REGION Sec16 INTRON Sec16	TF binding site mE1_TFBS_cad
3R	23539655	3R_23539655_SNP [dm3] 3R_27713933_SNP [dm6]	G	C	1.708e^-4	0.896	INTERGENIC
2R	19366724	2R_19366724_SNP [dm3] 2R_23479201_SNP [dm6]	C	T	1.717e^-4	0.896	INTRON CG43795
2R	19366725	2R_19366725_SNP [dm3] 2R_23479202_SNP [dm6]	T	C	1.717e^-4	0.896	INTRON CG43795
3L	4607464	3L_4607464_SNP [dm3] 3L_4607464_SNP [dm6]	T	C	1.720e^-4	0.896	INTRON Src64B
3L	10981582	3L_10981582_SNP [dm3] 3L_10988482_SNP [dm6]	A	T	1.721e^-4	0.896	INTRON klu
3R	4513501	3R_4513501_SNP [dm3] 3R_8687779_SNP [dm6]	C	T	1.723e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19759199	X_19759199_SNP [dm3] X_19865166_SNP [dm6]	T	C	1.727e^-4	0.896	NON_SYNONYMOUS_CODING CG15618 UPSTREAM Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	17025929	X_17025929_DEL [dm3] X_17131896_DEL [dm6]	ATTGCTCACCTAAAAACTC...	A	1.732e^-4	0.896	INTRON CG5004
3L	7868276	3L_7868276_SNP [dm3] 3L_7875176_SNP [dm6]	C	T	1.743e^-4	0.896	INTRON CG32365	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3L	4886647	3L_4886647_SNP [dm3] 3L_4886647_SNP [dm6]	A	G	1.743e^-4	0.896	INTRON CG17150
3R	18418429	3R_18418429_INS [dm3] 3R_22592707_INS [dm6]	A	AGA	1.748e^-4	0.896	INTRON Efa6
X	8426972	X_8426972_SNP [dm3] X_8532939_SNP [dm6]	A	T	1.748e^-4	0.896	INTRON Nrg
3R	21191225	3R_21191225_SNP [dm3] 3R_25365503_SNP [dm6]	T	C	1.761e^-4	0.896	INTRON Fur1
3L	8003219	3L_8003219_SNP [dm3] 3L_8010119_SNP [dm6]	G	A	1.761e^-4	0.896	INTRON nmo	TF binding site mE1_TFBS_HSA
2L	17260558	2L_17260558_SNP [dm3] 2L_17260558_SNP [dm6]	A	C	1.776e^-4	0.896	START_GAINED beat-IIIc UTR_5_PRIME beat-IIIc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	16479234	2R_16479234_SNP [dm3] 2R_20591729_SNP [dm6]	T	A	1.779e^-4	0.896	INTRON bl	TF binding site BDTNP1_TFBS_dl
3R	21391474	3R_21391474_SNP [dm3] 3R_25565752_SNP [dm6]	G	T	1.779e^-4	0.896	INTRON msi
3R	18783266	3R_18783266_SNP [dm3] 3R_22957544_SNP [dm6]	T	C	1.783e^-4	0.896	INTRON klg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16762200	3R_16762200_SNP [dm3] 3R_20936478_SNP [dm6]	T	C	1.787e^-4	0.896	INTRON CG31191
2R	16479543	2R_16479543_SNP [dm3] 2R_20592038_SNP [dm6]	T	G	1.799e^-4	0.896	INTRON bl
2L	2956417	2L_2956417_SNP [dm3] 2L_2956417_SNP [dm6]	A	T	1.815e^-4	0.896	UPSTREAM Rbp9 INTRON Rbp9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	21404514	3R_21404514_SNP [dm3] 3R_25578792_SNP [dm6]	C	G	1.815e^-4	0.896	INTRON msi	TF binding site BDTNP1_TFBS_slp1
3R	25316952	3R_25316952_SNP [dm3] 3R_29491230_SNP [dm6]	G	A	1.816e^-4	0.896	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12335964	2R_12335964_SNP [dm3] 2R_16448459_SNP [dm6]	A	T	1.818e^-4	0.896	DOWNSTREAM CG15925 INTERGENIC
2R	16479294	2R_16479294_SNP [dm3] 2R_20591789_SNP [dm6]	A	C	1.819e^-4	0.896	INTRON bl	TF binding site BDTNP1_TFBS_dl
2R	18955918	2R_18955918_SNP [dm3] 2R_23068395_SNP [dm6]	A	C	1.826e^-4	0.896	INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl
3L	11241239	3L_11241239_SNP [dm3] 3L_11248139_SNP [dm6]	A	T	1.837e^-4	0.896	UPSTREAM CR44714 & 1 other DOWNSTREAM CR44713 EXON CR44717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	521426	2L_521426_SNP [dm3] 2L_521426_SNP [dm6]	G	A	1.838e^-4	0.896	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26412266	3R_26412266_SNP [dm3] 3R_30586544_SNP [dm6]	C	T	1.851e^-4	0.896	SYNONYMOUS_CODING CG9717
2R	13745330	2R_13745330_SNP [dm3] 2R_17857825_SNP [dm6]	C	A	1.851e^-4	0.896	INTRON olf186-F
2R	12432587	2R_12432587_SNP [dm3] 2R_16545082_SNP [dm6]	A	G	1.856e^-4	0.896	INTERGENIC
2L	13249384	2L_13249384_SNP [dm3] 2L_13249384_SNP [dm6]	A	G	1.859e^-4	0.896	SYNONYMOUS_CODING CG16820
2R	12658660	2R_12658660_SNP [dm3] 2R_16771155_SNP [dm6]	C	T	1.867e^-4	0.896	INTRON unc-104
3L	6046432	3L_6046432_SNP [dm3] 3L_6053332_SNP [dm6]	C	G	1.867e^-4	0.896	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
3R	20509250	3R_20509250_SNP [dm3] 3R_24683528_SNP [dm6]	C	T	1.869e^-4	0.896	INTRON slo
3R	25465539	3R_25465539_INS [dm3] 3R_29639817_INS [dm6]	T	TGAGGATGT	1.872e^-4	0.896	INTRON Dop1R2
2R	11840101	2R_11840101_SNP [dm3] 2R_15952596_SNP [dm6]	A	G	1.881e^-4	0.896	UPSTREAM Strn-Mlck INTRON Strn-Mlck
3L	1236980	3L_1236980_SNP [dm3] 3L_1236980_SNP [dm6]	G	A	1.886e^-4	0.896	SYNONYMOUS_CODING CG9194 DOWNSTREAM CG9192
2L	8140123	2L_8140123_SNP [dm3] 2L_8140123_SNP [dm6]	C	T	1.886e^-4	0.896	SYNONYMOUS_CODING CG8552 UTR_5_PRIME CG8552	TF binding site mE1_TFBS_cad
2R	16479291	2R_16479291_SNP [dm3] 2R_20591786_SNP [dm6]	T	A	1.889e^-4	0.896	INTRON bl	TF binding site BDTNP1_TFBS_dl
2R	17775821	2R_17775821_SNP [dm3] 2R_21888316_SNP [dm6]	A	C	1.908e^-4	0.896	INTRON Fili
3R	22831558	3R_22831558_SNP [dm3] 3R_27005836_SNP [dm6]	T	C	1.911e^-4	0.896	UPSTREAM CG6296 DOWNSTREAM CG6295 INTRON RYa-R	TF binding site mE1_TFBS_cad
3R	15179485	3R_15179485_SNP [dm3] 3R_19353763_SNP [dm6]	A	T	1.924e^-4	0.896	UPSTREAM CG43203 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
2R	17783581	2R_17783581_SNP [dm3] 2R_21896076_SNP [dm6]	G	C	1.925e^-4	0.896	INTRON Fili
3L	12288454	3L_12288454_SNP [dm3] 3L_12295354_SNP [dm6]	T	C	1.926e^-4	0.896	INTRON CG4328
3L	6118693	3L_6118693_SNP [dm3] 3L_6125593_SNP [dm6]	G	A	1.926e^-4	0.896	SYNONYMOUS_CODING l_3_mbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18299868	2R_18299868_SNP [dm3] 2R_22412363_SNP [dm6]	C	A	1.927e^-4	0.896	SYNONYMOUS_CODING Mes4 UPSTREAM qkr58E-3 DOWNSTREAM qkr58E-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	14182658	3R_14182658_SNP [dm3] 3R_18356936_SNP [dm6]	A	C	1.928e^-4	0.896	INTRON CG15803
3L	8905402	3L_8905402_SNP [dm3] 3L_8912302_SNP [dm6]	A	T	1.928e^-4	0.896	UPSTREAM Tsp66E & 1 other INTRON mfr	TF binding site BDTNP1_TFBS_dl
3R	21179629	3R_21179629_SNP [dm3] 3R_25353907_SNP [dm6]	T	C	1.933e^-4	0.896	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	2821643	X_2821643_SNP [dm3] X_2927610_SNP [dm6]	T	G	1.938e^-4	0.896	UPSTREAM CG14424 INTRON kirre
3R	20376032	3R_20376032_SNP [dm3] 3R_24550310_SNP [dm6]	T	C	1.946e^-4	0.896	INTRON Esyt2
3R	11352892	3R_11352892_SNP [dm3] 3R_15527170_SNP [dm6]	T	C	1.968e^-4	0.896	INTERGENIC
3L	3261778	3L_3261778_SNP [dm3] 3L_3261778_SNP [dm6]	G	A	1.969e^-4	0.896	INTRON ckd
3R	15674791	3R_15674791_INS [dm3] 3R_19849069_INS [dm6]	A	AATAAACA	1.972e^-4	0.896	INTRON CG4662
3L	4730649	3L_4730649_SNP [dm3] 3L_4730649_SNP [dm6]	A	C	1.975e^-4	0.896	INTRON RhoGEF64C
3L	2869110	3L_2869110_SNP [dm3] 3L_2869110_SNP [dm6]	G	A	1.980e^-4	0.896	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13013067	3R_13013067_SNP [dm3] 3R_17187345_SNP [dm6]	G	A	1.984e^-4	0.896	INTRON Mur89F
3L	11409321	3L_11409321_SNP [dm3] 3L_11416221_SNP [dm6]	C	A	1.986e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17442807	2L_17442807_SNP [dm3] 2L_17442807_SNP [dm6]	T	C	1.987e^-4	0.896	SYNONYMOUS_CODING dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6046421	3L_6046421_SNP [dm3] 3L_6053321_SNP [dm6]	A	G	1.992e^-4	0.896	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
2L	10935992	2L_10935992_SNP [dm3] 2L_10935992_SNP [dm6]	C	A	1.995e^-4	0.896	UPSTREAM CG14072 INTRON dpr2
3R	26414056	3R_26414056_SNP [dm3] 3R_30588334_SNP [dm6]	T	C	1.997e^-4	0.896	INTERGENIC
2R	9779295	2R_9779295_SNP [dm3] 2R_13891790_SNP [dm6]	A	G	1.998e^-4	0.896	SYNONYMOUS_CODING shot INTRON shot
3R	21166845	3R_21166845_SNP [dm3] 3R_25341123_SNP [dm6]	G	T	1.999e^-4	0.896	SYNONYMOUS_CODING rha	TF binding site mE1_TFBS_cad
3L	12288449	3L_12288449_SNP [dm3] 3L_12295349_SNP [dm6]	A	T	1.999e^-4	0.896	INTRON CG4328
3L	15624987	3L_15624987_SNP [dm3] 3L_15631887_SNP [dm6]	C	G	2.001e^-4	0.896	INTRON comm3
3R	21406176	3R_21406176_SNP [dm3] 3R_25580454_SNP [dm6]	T	A	2.005e^-4	0.896	DOWNSTREAM CG4582 INTRON msi
3R	21385628	3R_21385628_SNP [dm3] 3R_25559906_SNP [dm6]	G	A	2.006e^-4	0.896	INTRON msi
3L	17355592	3L_17355592_SNP [dm3] 3L_17362492_SNP [dm6]	A	G	2.006e^-4	0.896	DOWNSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3L	15057400	3L_15057400_SNP [dm3] 3L_15064300_SNP [dm6]	G	A	2.016e^-4	0.896	INTRON Sytbeta	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18415050	3R_18415050_SNP [dm3] 3R_22589328_SNP [dm6]	G	C	2.017e^-4	0.896	INTRON Efa6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12273111	2R_12273111_SNP [dm3] 2R_16385606_SNP [dm6]	T	C	2.018e^-4	0.896	UTR_3_PRIME CG43187 UPSTREAM Sema-2b
2R	17775816	2R_17775816_SNP [dm3] 2R_21888311_SNP [dm6]	C	A	2.020e^-4	0.896	INTRON Fili
3L	15626540	3L_15626540_SNP [dm3] 3L_15633440_SNP [dm6]	C	A	2.023e^-4	0.896	UPSTREAM comm3 INTRON comm3
2L	6954513	2L_6954513_SNP [dm3] 2L_6954513_SNP [dm6]	A	G	2.023e^-4	0.896	UTR_3_PRIME CG13775 & 1 other DOWNSTREAM CG13775
3L	3791520	3L_3791520_SNP [dm3] 3L_3791520_SNP [dm6]	T	A	2.026e^-4	0.896	UTR_3_PRIME CG32266 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7868777	3L_7868777_SNP [dm3] 3L_7875677_SNP [dm6]	C	T	2.037e^-4	0.896	INTRON CG32365	TF binding site mE1_TFBS_kn
3R	21191216	3R_21191216_SNP [dm3] 3R_25365494_SNP [dm6]	T	C	2.042e^-4	0.896	INTRON Fur1
3R	21191291	3R_21191291_SNP [dm3] 3R_25365569_SNP [dm6]	C	T	2.042e^-4	0.896	INTRON Fur1
3R	8900758	3R_8900758_SNP [dm3] 3R_13075036_SNP [dm6]	A	G	2.050e^-4	0.896	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18955915	2R_18955915_SNP [dm3] 2R_23068392_SNP [dm6]	G	A	2.062e^-4	0.896	INTRON l_2_k09913	TF binding site BDTNP1_TFBS_dl
3R	8930631	3R_8930631_SNP [dm3] 3R_13104909_SNP [dm6]	T	G	2.064e^-4	0.896	INTRON timeout
3R	20727509	3R_20727509_SNP [dm3] 3R_24901787_SNP [dm6]	T	C	2.069e^-4	0.896	NON_SYNONYMOUS_CODING CG10845 INTRON CG13643	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13745380	2R_13745380_SNP [dm3] 2R_17857875_SNP [dm6]	A	G	2.071e^-4	0.896	INTRON olf186-F
X	5299908	X_5299908_INS [dm3] X_5405875_INS [dm6]	A	ATTTTGGACGG...	2.074e^-4	0.896	DOWNSTREAM SK INTRON NAAT1
2R	4252889	2R_4252889_SNP [dm3] 2R_8365384_SNP [dm6]	T	A	2.075e^-4	0.896	UPSTREAM swif & 1 other DOWNSTREAM boly INTRON pdm3
2L	13137692	2L_13137692_SNP [dm3] 2L_13137692_SNP [dm6]	T	A	2.076e^-4	0.896	INTERGENIC
2L	10793136	2L_10793136_SNP [dm3] 2L_10793136_SNP [dm6]	G	A	2.082e^-4	0.896	INTRON CG31869
3L	11268671	3L_11268671_SNP [dm3] 3L_11275571_SNP [dm6]	C	T	2.084e^-4	0.896	INTERGENIC
3L	14075442	3L_14075442_SNP [dm3] 3L_14082342_SNP [dm6]	T	C	2.086e^-4	0.896	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16932039	3R_16932039_SNP [dm3] 3R_21106317_SNP [dm6]	G	A	2.091e^-4	0.896	SYNONYMOUS_CODING Sec15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16004492	3R_16004492_SNP [dm3] 3R_20178770_SNP [dm6]	C	A	2.111e^-4	0.896	INTERGENIC
3L	8905398	3L_8905398_SNP [dm3] 3L_8912298_SNP [dm6]	A	T	2.120e^-4	0.896	UPSTREAM Tsp66E & 1 other INTRON mfr	TF binding site BDTNP1_TFBS_dl
X	16850744	X_16850744_SNP [dm3] X_16956711_SNP [dm6]	T	G	2.124e^-4	0.896	UTR_3_PRIME CG9086 DOWNSTREAM CG9086 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	18941474	3L_18941474_SNP [dm3] 3L_18948374_SNP [dm6]	G	C	2.125e^-4	0.896	INTERGENIC
2R	1187968	2R_1187968_SNP [dm3] 2R_5300463_SNP [dm6]	T	C	2.126e^-4	0.896	INTERGENIC	transposable element FlyBase
2L	16442380	2L_16442380_SNP [dm3] 2L_16442380_SNP [dm6]	T	G	2.130e^-4	0.896	INTRON CG5888
X	6451143	X_6451143_SNP [dm3] X_6557110_SNP [dm6]	A	C	2.136e^-4	0.896	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	18300017	2R_18300017_SNP [dm3] 2R_22412512_SNP [dm6]	G	C	2.142e^-4	0.896	UTR_3_PRIME Mes4 UPSTREAM qkr58E-3 DOWNSTREAM qkr58E-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
X	5940384	X_5940384_SNP [dm3] X_6046351_SNP [dm6]	C	T	2.144e^-4	0.896	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1491968	3L_1491968_SNP [dm3] 3L_1491968_SNP [dm6]	G	A	2.151e^-4	0.896	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	520769	2L_520769_SNP [dm3] 2L_520769_SNP [dm6]	A	T	2.155e^-4	0.896	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	13173626	3L_13173626_SNP [dm3] 3L_13180526_SNP [dm6]	C	T	2.155e^-4	0.896	INTERGENIC
3R	19212377	3R_19212377_SNP [dm3] 3R_23386655_SNP [dm6]	C	T	2.163e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_Trl
X	12500302	X_12500302_SNP [dm3] X_12606269_SNP [dm6]	C	G	2.163e^-4	0.896	NON_SYNONYMOUS_CODING Sec16 INTRON Sec16	TF binding site mE1_TFBS_cad
3R	4958573	3R_4958573_SNP [dm3] 3R_9132851_SNP [dm6]	G	T	2.163e^-4	0.896	INTRON pum
2R	18555602	2R_18555602_SNP [dm3] 2R_22668097_SNP [dm6]	C	T	2.164e^-4	0.896	SYNONYMOUS_CODING CG30269 DOWNSTREAM CG30273	TF binding site mE1_TFBS_cad
3L	12484249	3L_12484249_SNP [dm3] 3L_12491149_SNP [dm6]	T	A	2.177e^-4	0.896	UPSTREAM CG10660 & 1 other DOWNSTREAM CG10657 EXON CR45681	TF binding site mE1_TFBS_Trl
2R	18450265	2R_18450265_SNP [dm3] 2R_22562760_SNP [dm6]	T	A	2.178e^-4	0.896	NON_SYNONYMOUS_CODING CG11362 UPSTREAM px DOWNSTREAM dnr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25243058	3R_25243058_SNP [dm3] 3R_29417336_SNP [dm6]	A	G	2.182e^-4	0.896	INTRON Ptp99A
2L	11865332	2L_11865332_SNP [dm3] 2L_11865332_SNP [dm6]	C	T	2.187e^-4	0.896	INTRON Pde1c
3R	26413453	3R_26413453_SNP [dm3] 3R_30587731_SNP [dm6]	C	A	2.196e^-4	0.896	UPSTREAM CG9717 INTERGENIC
3R	21191277	3R_21191277_SNP [dm3] 3R_25365555_SNP [dm6]	G	C	2.197e^-4	0.896	INTRON Fur1
3L	5868308	3L_5868308_SNP [dm3] 3L_5875208_SNP [dm6]	C	T	2.199e^-4	0.896	SYNONYMOUS_CODING CG18586
X	8222286	X_8222286_SNP [dm3] X_8328253_SNP [dm6]	A	C	2.203e^-4	0.896	INTRON nAChRalpha3
2L	8910670	2L_8910670_SNP [dm3] 2L_8910670_SNP [dm6]	T	C	2.211e^-4	0.896	INTRON CG34398
2R	14072047	2R_14072047_SNP [dm3] 2R_18184542_SNP [dm6]	T	G	2.215e^-4	0.896	UTR_3_PRIME CG33958 UPSTREAM CG5721	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2956460	2L_2956460_SNP [dm3] 2L_2956460_SNP [dm6]	G	T	2.215e^-4	0.896	UPSTREAM Rbp9 INTRON Rbp9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	6309400	2L_6309400_SNP [dm3] 2L_6309400_SNP [dm6]	T	C	2.218e^-4	0.896	UTR_3_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
3R	22640478	3R_22640478_SNP [dm3] 3R_26814756_SNP [dm6]	A	T	2.219e^-4	0.896	INTRON Tl
2R	12668173	2R_12668173_SNP [dm3] 2R_16780668_SNP [dm6]	C	T	2.221e^-4	0.896	NON_SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	15771326	3R_15771326_SNP [dm3] 3R_19945604_SNP [dm6]	G	T	2.228e^-4	0.896	INTRON Hs6st
3R	8906908	3R_8906908_SNP [dm3] 3R_13081186_SNP [dm6]	C	T	2.228e^-4	0.896	INTERGENIC
3R	25770240	3R_25770240_SNP [dm3] 3R_29944518_SNP [dm6]	A	G	2.233e^-4	0.896	INTRON CG15523
X	9190831	X_9190831_SNP [dm3] X_9296798_SNP [dm6]	A	T	2.238e^-4	0.896	INTRON lz
3R	15483429	3R_15483429_DEL [dm3] 3R_19657707_DEL [dm6]	GATAACCAG	G	2.241e^-4	0.896	UTR_5_PRIME CG6184
3L	6119134	3L_6119134_SNP [dm3] 3L_6126034_SNP [dm6]	C	G	2.245e^-4	0.896	INTRON l_3_mbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25691719	3R_25691719_SNP [dm3] 3R_29865997_SNP [dm6]	C	T	2.247e^-4	0.896	UPSTREAM Zip99C INTRON Zip99C
2R	12862547	2R_12862547_SNP [dm3] 2R_16975042_SNP [dm6]	G	C	2.248e^-4	0.896	INTRON Cbp53E
3R	18459852	3R_18459852_SNP [dm3] 3R_22634130_SNP [dm6]	C	T	2.253e^-4	0.896	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21179628	3R_21179628_SNP [dm3] 3R_25353906_SNP [dm6]	G	T	2.264e^-4	0.896	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	17636192	3L_17636192_SNP [dm3] 3L_17643092_SNP [dm6]	C	T	2.265e^-4	0.896	INTRON Pep	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10423360	3R_10423360_SNP [dm3] 3R_14597638_SNP [dm6]	C	G	2.269e^-4	0.896	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8272618	3L_8272618_SNP [dm3] 3L_8279518_SNP [dm6]	C	G	2.276e^-4	0.896	SYNONYMOUS_CODING Dscam4
3L	5868274	3L_5868274_SNP [dm3] 3L_5875174_SNP [dm6]	A	T	2.280e^-4	0.896	NON_SYNONYMOUS_CODING CG18586
3L	1286059	3L_1286059_INS [dm3] 3L_1286059_INS [dm6]	G	CACTTTGGAGATC...	2.281e^-4	0.896	INTRON CG32333
X	4608176	X_4608176_SNP [dm3] X_4714143_SNP [dm6]	C	T	2.284e^-4	0.896	INTRON Proc-R
2R	15196064	2R_15196064_SNP [dm3] 2R_19308559_SNP [dm6]	G	A	2.303e^-4	0.896	INTRON EndoB
X	19985972	X_19985972_SNP [dm3] X_20091939_SNP [dm6]	G	T	2.311e^-4	0.896	SYNONYMOUS_CODING fd19B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8936819	3R_8936819_SNP [dm3] 3R_13111097_SNP [dm6]	A	T	2.314e^-4	0.896	INTRON timeout
3R	18416862	3R_18416862_SNP [dm3] 3R_22591140_SNP [dm6]	C	T	2.315e^-4	0.896	INTRON Efa6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	19625246	3R_19625246_SNP [dm3] 3R_23799524_SNP [dm6]	T	A	2.316e^-4	0.896	INTRON mbc
3L	19275066	3L_19275066_SNP [dm3] 3L_19281966_SNP [dm6]	G	T	2.322e^-4	0.896	UTR_3_PRIME Gbs-76A
3L	1491948	3L_1491948_SNP [dm3] 3L_1491948_SNP [dm6]	A	T	2.323e^-4	0.896	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	20339323	X_20339323_SNP [dm3] X_20468296_SNP [dm6]	C	T	2.326e^-4	0.896	UTR_5_PRIME GstT3 UPSTREAM GstT3 INTRON GstT3
3L	20374769	3L_20374769_SNP [dm3] 3L_20381669_SNP [dm6]	C	T	2.341e^-4	0.896	SYNONYMOUS_CODING RhoBTB DOWNSTREAM CG5498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7865465	3L_7865465_SNP [dm3] 3L_7872365_SNP [dm6]	G	A	2.343e^-4	0.896	INTRON CG32365
2L	3146797	2L_3146797_SNP [dm3] 2L_3146797_SNP [dm6]	G	T	2.357e^-4	0.896	UTR_3_PRIME Mad UPSTREAM CG12400
2R	16173632	2R_16173632_SNP [dm3] 2R_20286127_SNP [dm6]	T	C	2.358e^-4	0.896	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2R	9468574	2R_9468574_SNP [dm3] 2R_13581069_SNP [dm6]	A	C	2.364e^-4	0.896	SYNONYMOUS_CODING CG6191 UTR_3_PRIME CG45088	TF binding site mE1_TFBS_sens
X	5452773	X_5452773_SNP [dm3] X_5558740_SNP [dm6]	C	G	2.367e^-4	0.896	INTRON Vsx2
X	12494343	X_12494343_SNP [dm3] X_12600310_SNP [dm6]	C	A	2.377e^-4	0.896	SYNONYMOUS_CODING Sec16	TF binding site BDTNP1_TFBS_dl
2R	6243342	2R_6243342_SNP [dm3] 2R_10355837_SNP [dm6]	C	T	2.380e^-4	0.896	UPSTREAM CG12902 & 1 other DOWNSTREAM CG42733 INTRON CG42732
2L	18002104	2L_18002104_SNP [dm3] 2L_18002104_SNP [dm6]	A	T	2.381e^-4	0.896	UPSTREAM CR44604 INTERGENIC
3R	23818837	3R_23818837_SNP [dm3] 3R_27993115_SNP [dm6]	C	T	2.385e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1491971	3L_1491971_SNP [dm3] 3L_1491971_SNP [dm6]	A	C	2.397e^-4	0.896	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15178351	3R_15178351_SNP [dm3] 3R_19352629_SNP [dm6]	G	A	2.405e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	16251293	X_16251293_SNP [dm3] X_16357260_SNP [dm6]	T	C	2.409e^-4	0.896	DOWNSTREAM sl INTRON U2af50	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	17345201	2R_17345201_SNP [dm3] 2R_21457696_SNP [dm6]	T	C	2.421e^-4	0.896	INTRON Sdc
3L	22378949	3L_22378949_SNP [dm3] 3L_22385849_SNP [dm6]	G	T	2.433e^-4	0.896	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20415525	3R_20415525_SNP [dm3] 3R_24589803_SNP [dm6]	C	T	2.434e^-4	0.896	INTRON mld	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6560534	2R_6560534_SNP [dm3] 2R_10673029_SNP [dm6]	C	T	2.436e^-4	0.896	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	9781860	X_9781860_SNP [dm3] X_9887827_SNP [dm6]	T	A	2.437e^-4	0.896	DOWNSTREAM CG15249 INTERGENIC
3R	11495299	3R_11495299_SNP [dm3] 3R_15669577_SNP [dm6]	A	T	2.454e^-4	0.896	DOWNSTREAM CR43849 INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	13296261	3L_13296261_SNP [dm3] 3L_13303161_SNP [dm6]	A	G	2.458e^-4	0.896	UPSTREAM CR44555 & 1 other DOWNSTREAM CR43911 INTERGENIC
3L	22401590	3L_22401590_SNP [dm3] 3L_22408490_SNP [dm6]	A	G	2.459e^-4	0.896	UPSTREAM Ten-m INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_Trl
2R	12131922	2R_12131922_SNP [dm3] 2R_16244417_SNP [dm6]	G	C	2.463e^-4	0.896	INTRON CngA	TF binding site mE1_TFBS_inv
2L	2743147	2L_2743147_SNP [dm3] 2L_2743147_SNP [dm6]	G	T	2.472e^-4	0.896	UTR_3_PRIME Hrs DOWNSTREAM CG9961	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8470191	2L_8470191_SNP [dm3] 2L_8470191_SNP [dm6]	T	C	2.475e^-4	0.896	INTRON d	TF binding site mE1_TFBS_chinmo
2R	12666474	2R_12666474_SNP [dm3] 2R_16778969_SNP [dm6]	T	G	2.479e^-4	0.896	UTR_3_PRIME Vkor UPSTREAM resilin
3R	16922683	3R_16922683_SNP [dm3] 3R_21096961_SNP [dm6]	T	G	2.482e^-4	0.896	INTRON RhoGAP93B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11862652	2L_11862652_SNP [dm3] 2L_11862652_SNP [dm6]	G	A	2.485e^-4	0.896	INTRON Pde1c
3L	1491933	3L_1491933_SNP [dm3] 3L_1491933_SNP [dm6]	A	G	2.498e^-4	0.896	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	22044420	X_22044420_SNP [dm3] X_22642584_SNP [dm6]	C	T	2.500e^-4	0.896	INTERGENIC
3R	16937394	3R_16937394_SNP [dm3] 3R_21111672_SNP [dm6]	G	A	2.503e^-4	0.896	UTR_5_PRIME Rab11 DOWNSTREAM rtet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	17837868	2L_17837868_SNP [dm3] 2L_17837868_SNP [dm6]	C	G	2.503e^-4	0.896	INTRON CadN2
3L	8307848	3L_8307848_SNP [dm3] 3L_8314748_SNP [dm6]	T	C	2.509e^-4	0.896	INTRON CG7185	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	8946395	3R_8946395_SNP [dm3] 3R_13120673_SNP [dm6]	C	A	2.516e^-4	0.896	INTRON timeout
2L	13276051	2L_13276051_SNP [dm3] 2L_13276051_SNP [dm6]	T	A	2.519e^-4	0.896	INTRON CG44085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	21399069	3R_21399069_INS [dm3] 3R_25573347_INS [dm6]	A	AA	2.521e^-4	0.896	INTRON msi
2L	520752	2L_520752_SNP [dm3] 2L_520752_SNP [dm6]	T	A	2.530e^-4	0.896	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	9532685	3R_9532685_SNP [dm3] 3R_13706963_SNP [dm6]	C	T	2.534e^-4	0.896	SYNONYMOUS_CODING Adgf-C
X	16251255	X_16251255_SNP [dm3] X_16357222_SNP [dm6]	A	G	2.535e^-4	0.896	DOWNSTREAM sl INTRON U2af50	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	1884888	2L_1884888_SNP [dm3] 2L_1884888_SNP [dm6]	C	A	2.536e^-4	0.896	UTR_5_PRIME CG7337 UPSTREAM CG15358	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	15105030	3R_15105030_SNP [dm3] 3R_19279308_SNP [dm6]	T	G	2.539e^-4	0.896	INTRON CR44173
3L	5975806	3L_5975806_SNP [dm3] 3L_5982706_SNP [dm6]	A	G	2.541e^-4	0.896	DOWNSTREAM CR45439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens
2R	8348617	2R_8348617_DEL [dm3] 2R_12461112_DEL [dm6]	TATGCATC	GG	2.546e^-4	0.896	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9197287	3R_9197287_SNP [dm3] 3R_13371565_SNP [dm6]	A	T	2.549e^-4	0.896	INTRON Lip3
3L	6046428	3L_6046428_SNP [dm3] 3L_6053328_SNP [dm6]	C	G	2.552e^-4	0.896	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
3R	25386755	3R_25386755_SNP [dm3] 3R_29561033_SNP [dm6]	T	C	2.555e^-4	0.896	INTRON Dr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26637255	3R_26637255_SNP [dm3] 3R_30811533_SNP [dm6]	C	T	2.556e^-4	0.896	INTRON cindr
2R	9468993	2R_9468993_SNP [dm3] 2R_13581488_SNP [dm6]	A	C	2.564e^-4	0.896	SPLICE_SITE_REGION CG6191 & 1 other INTRON CG6191 & 1 other	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3R	9930983	3R_9930983_SNP [dm3] 3R_14105261_SNP [dm6]	T	A	2.565e^-4	0.896	UTR_3_PRIME CG12402
3L	14372459	3L_14372459_SNP [dm3] 3L_14379359_SNP [dm6]	A	G	2.569e^-4	0.896	INTERGENIC
3R	24136840	3R_24136840_SNP [dm3] 3R_28311118_SNP [dm6]	C	A	2.575e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	26733521	3R_26733521_SNP [dm3] 3R_30907799_SNP [dm6]	A	C	2.575e^-4	0.896	INTERGENIC
X	11362763	X_11362763_SNP [dm3] X_11468730_SNP [dm6]	A	G	2.578e^-4	0.896	INTRON CG43155
3R	27207996	3R_27207996_SNP [dm3] 3R_31382274_SNP [dm6]	A	T	2.580e^-4	0.896	UTR_5_PRIME CG1607
3R	25527736	3R_25527736_SNP [dm3] 3R_29702014_SNP [dm6]	G	A	2.580e^-4	0.896	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15288909	3R_15288909_SNP [dm3] 3R_19463187_SNP [dm6]	A	G	2.580e^-4	0.896	UPSTREAM Dys & 1 other INTRON Dys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
3L	1880607	3L_1880607_SNP [dm3] 3L_1880607_SNP [dm6]	C	T	2.582e^-4	0.896	INTRON CG13937
2L	9402102	2L_9402102_SNP [dm3] 2L_9402102_SNP [dm6]	A	T	2.585e^-4	0.896	INTRON Shawl
X	2407653	X_2407653_SNP [dm3] X_2513620_SNP [dm6]	C	T	2.586e^-4	0.896	INTRON trol
2L	2746175	2L_2746175_SNP [dm3] 2L_2746175_SNP [dm6]	G	A	2.589e^-4	0.896	NON_SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	791029	2L_791029_SNP [dm3] 2L_791029_SNP [dm6]	T	A	2.593e^-4	0.896	UPSTREAM Pkg21D INTERGENIC
3R	21399106	3R_21399106_SNP [dm3] 3R_25573384_SNP [dm6]	A	T	2.605e^-4	0.896	INTRON msi
3R	25527744	3R_25527744_SNP [dm3] 3R_29702022_SNP [dm6]	T	C	2.617e^-4	0.896	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	436503	3L_436503_SNP [dm3] 3L_436503_SNP [dm6]	T	C	2.617e^-4	0.896	SYNONYMOUS_CODING klar	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	973794	2R_973794_SNP [dm3] 2R_5086289_SNP [dm6]	C	A	2.620e^-4	0.896	INTERGENIC
3R	10332725	3R_10332725_SNP [dm3] 3R_14507003_SNP [dm6]	A	T	2.631e^-4	0.896	INTRON CR44177
X	6323182	X_6323182_SNP [dm3] X_6429149_SNP [dm6]	T	A	2.636e^-4	0.896	INTRON CG42340
2R	18423473	2R_18423473_SNP [dm3] 2R_22535968_SNP [dm6]	C	T	2.641e^-4	0.896	SYNONYMOUS_CODING px
3R	26414116	3R_26414116_SNP [dm3] 3R_30588394_SNP [dm6]	C	G	2.642e^-4	0.896	INTERGENIC
2R	9119789	2R_9119789_SNP [dm3] 2R_13232284_SNP [dm6]	A	G	2.648e^-4	0.896	SYNONYMOUS_CODING CG4670 DOWNSTREAM fsd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	3048501	2L_3048501_SNP [dm3] 2L_3048501_SNP [dm6]	T	A	2.651e^-4	0.896	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	13745370	2R_13745370_SNP [dm3] 2R_17857865_SNP [dm6]	T	C	2.657e^-4	0.896	INTRON olf186-F
3R	9532678	3R_9532678_SNP [dm3] 3R_13706956_SNP [dm6]	T	C	2.660e^-4	0.896	NON_SYNONYMOUS_CODING Adgf-C
3R	21275653	3R_21275653_SNP [dm3] 3R_25449931_SNP [dm6]	A	T	2.661e^-4	0.896	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20455283	2R_20455283_SNP [dm3] 2R_24567760_SNP [dm6]	T	G	2.667e^-4	0.896	NON_SYNONYMOUS_CODING uri DOWNSTREAM Fcp1
3L	12873780	3L_12873780_SNP [dm3] 3L_12880680_SNP [dm6]	T	A	2.700e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12852070	2R_12852070_SNP [dm3] 2R_16964565_SNP [dm6]	G	T	2.702e^-4	0.896	EXON CR44376
2L	2739823	2L_2739823_SNP [dm3] 2L_2739823_SNP [dm6]	G	T	2.709e^-4	0.896	UTR_3_PRIME CG31689 UPSTREAM Hrs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2745639	2L_2745639_SNP [dm3] 2L_2745639_SNP [dm6]	A	G	2.717e^-4	0.896	SYNONYMOUS_CODING Cwc25 UPSTREAM CG9961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	15078250	2L_15078250_SNP [dm3] 2L_15078250_SNP [dm6]	C	T	2.724e^-4	0.896	INTRON CG15270	TF binding site BDTNP1_TFBS_twi
3L	15626505	3L_15626505_SNP [dm3] 3L_15633405_SNP [dm6]	A	G	2.725e^-4	0.896	UPSTREAM comm3 INTRON comm3
2L	1699735	2L_1699735_SNP [dm3] 2L_1699735_SNP [dm6]	C	A	2.734e^-4	0.896	UTR_3_PRIME chinmo
2L	12749017	2L_12749017_SNP [dm3] 2L_12749017_SNP [dm6]	T	G	2.762e^-4	0.896	INTERGENIC
2L	19682463	2L_19682463_SNP [dm3] 2L_19682463_SNP [dm6]	A	C	2.770e^-4	0.896	INTRON Lar
2R	19666941	2R_19666941_SNP [dm3] 2R_23779418_SNP [dm6]	T	C	2.770e^-4	0.896	INTRON CG9850
2L	17059465	2L_17059465_SNP [dm3] 2L_17059465_SNP [dm6]	C	T	2.772e^-4	0.896	INTERGENIC
3L	1880837	3L_1880837_SNP [dm3] 3L_1880837_SNP [dm6]	G	A	2.782e^-4	0.896	INTRON CG13937	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17925554	X_17925554_INS [dm3] X_18031521_INS [dm6]	T	TAAGCAAA	2.782e^-4	0.896	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12873758	3L_12873758_DEL [dm3] 3L_12880658_DEL [dm6]	GCCATTATTAAG...	G	2.790e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_inv
3L	17635932	3L_17635932_SNP [dm3] 3L_17642832_SNP [dm6]	A	T	2.790e^-4	0.896	INTRON Pep	TF binding site BDTNP1_TFBS_dl
3R	21385626	3R_21385626_SNP [dm3] 3R_25559904_SNP [dm6]	C	A	2.815e^-4	0.896	INTRON msi
2R	5937252	2R_5937252_SNP [dm3] 2R_10049747_SNP [dm6]	A	C	2.821e^-4	0.896	SPLICE_SITE_REGION CoVIIc UPSTREAM CG44296 INTRON CoVIIc	TF binding site BDTNP1_TFBS_dl
2R	9468738	2R_9468738_SNP [dm3] 2R_13581233_SNP [dm6]	G	A	2.826e^-4	0.896	SYNONYMOUS_CODING CG6191 UTR_3_PRIME CG45088	TF binding site mE1_TFBS_sens
X	14133184	X_14133184_SNP [dm3] X_14239151_SNP [dm6]	G	A	2.831e^-4	0.896	SYNONYMOUS_CODING CG1434	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22879138	3L_22879138_INS [dm3] 3L_22886038_INS [dm6]	G	GG	2.840e^-4	0.896	INTRON slif	TF binding site mE1_TFBS_HSA
3R	21496214	3R_21496214_SNP [dm3] 3R_25670492_SNP [dm6]	C	T	2.840e^-4	0.896	INTRON Lgr3
2R	9811090	2R_9811090_SNP [dm3] 2R_13923585_SNP [dm6]	T	A	2.852e^-4	0.896	INTRON shot	TF binding site BDTNP1_TFBS_dl
2L	8467635	2L_8467635_SNP [dm3] 2L_8467635_SNP [dm6]	A	T	2.853e^-4	0.896	DOWNSTREAM fu2 INTRON d	TF binding site mE1_TFBS_Kr
X	771000	X_771000_SNP [dm3] X_876967_SNP [dm6]	G	A	2.857e^-4	0.896	DOWNSTREAM CG11664 INTRON CG43867
3R	15177811	3R_15177811_SNP [dm3] 3R_19352089_SNP [dm6]	G	C	2.859e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens
3L	11060388	3L_11060388_SNP [dm3] 3L_11067288_SNP [dm6]	T	C	2.861e^-4	0.896	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101
3R	16942414	3R_16942414_SNP [dm3] 3R_21116692_SNP [dm6]	T	G	2.866e^-4	0.896	SPLICE_SITE_REGION ppan DOWNSTREAM Rab11 INTRON ppan	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13648047	2R_13648047_INS [dm3] 2R_17760542_INS [dm6]	T	TT	2.868e^-4	0.896	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13648030	2R_13648030_SNP [dm3] 2R_17760525_SNP [dm6]	G	A	2.874e^-4	0.896	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2252288	3L_2252288_SNP [dm3] 3L_2252288_SNP [dm6]	C	G	2.879e^-4	0.896	SYNONYMOUS_CODING CG32305 DOWNSTREAM CG1275	TF binding site mE1_TFBS_cad
2R	17011554	2R_17011554_SNP [dm3] 2R_21124049_SNP [dm6]	G	A	2.879e^-4	0.896	UTR_3_PRIME CG4050 DOWNSTREAM ktub	TF binding site mE1_TFBS_cad
2R	8887146	2R_8887146_SNP [dm3] 2R_12999641_SNP [dm6]	C	T	2.880e^-4	0.896	INTRON Su_z_2	TF binding site mE1_TFBS_HSA
2L	8064404	2L_8064404_SNP [dm3] 2L_8064404_SNP [dm6]	T	A	2.885e^-4	0.896	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
3R	25699005	3R_25699005_SNP [dm3] 3R_29873283_SNP [dm6]	T	G	2.892e^-4	0.896	INTRON CG34133	TF binding site mE1_TFBS_cad
3L	14546595	3L_14546595_SNP [dm3] 3L_14553495_SNP [dm6]	C	A	2.897e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
3L	5348394	3L_5348394_SNP [dm3] 3L_5355294_SNP [dm6]	A	G	2.902e^-4	0.896	UTR_5_PRIME lama INTRON lama	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22621765	3R_22621765_SNP [dm3] 3R_26796043_SNP [dm6]	G	A	2.903e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15179468	3R_15179468_SNP [dm3] 3R_19353746_SNP [dm6]	A	G	2.924e^-4	0.896	UPSTREAM CG43203 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
2L	17843026	2L_17843026_SNP [dm3] 2L_17843026_SNP [dm6]	G	T	2.925e^-4	0.896	INTRON CadN2
3L	14808682	3L_14808682_SNP [dm3] 3L_14815582_SNP [dm6]	A	G	2.932e^-4	0.896	INTRON CG17839
2R	6244270	2R_6244270_SNP [dm3] 2R_10356765_SNP [dm6]	A	T	2.932e^-4	0.896	UTR_5_PRIME CG42733 UPSTREAM CG12902 & 1 other INTRON CG42732
2R	6557302	2R_6557302_SNP [dm3] 2R_10669797_SNP [dm6]	A	G	2.937e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6373110	2L_6373110_SNP [dm3] 2L_6373110_SNP [dm6]	T	C	2.947e^-4	0.896	UPSTREAM slam INTRON slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17801815	3R_17801815_SNP [dm3] 3R_21976093_SNP [dm6]	A	C	2.950e^-4	0.896	INTRON Eip93F
2R	12852067	2R_12852067_SNP [dm3] 2R_16964562_SNP [dm6]	A	G	2.951e^-4	0.896	EXON CR44376
3R	8906913	3R_8906913_SNP [dm3] 3R_13081191_SNP [dm6]	T	A	2.951e^-4	0.896	INTERGENIC
2L	2502269	2L_2502269_SNP [dm3] 2L_2502269_SNP [dm6]	G	A	2.952e^-4	0.896	INTERGENIC
X	4776917	X_4776917_SNP [dm3] X_4882884_SNP [dm6]	G	T	2.955e^-4	0.896	INTRON CG42594
2R	10517531	2R_10517531_SNP [dm3] 2R_14630026_SNP [dm6]	G	A	2.962e^-4	0.896	NON_SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	902674	2L_902674_INS [dm3] 2L_902674_INS [dm6]	C	CC	2.969e^-4	0.896	INTERGENIC
3L	12814415	3L_12814415_SNP [dm3] 3L_12821315_SNP [dm6]	T	A	2.970e^-4	0.896	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3329646	3L_3329646_DEL [dm3] 3L_3329646_DEL [dm6]	TTTTCC	T	2.972e^-4	0.896	UPSTREAM CG11526 & 1 other DOWNSTREAM CR45380 INTERGENIC	TF binding site mE1_TFBS_cad
3L	6046457	3L_6046457_SNP [dm3] 3L_6053357_SNP [dm6]	A	T	2.974e^-4	0.896	DOWNSTREAM Jon65Ai & 1 other INTERGENIC	transposable element FlyBase
3L	12814468	3L_12814468_SNP [dm3] 3L_12821368_SNP [dm6]	C	A	2.974e^-4	0.896	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_sens
3L	3212313	3L_3212313_SNP [dm3] 3L_3212313_SNP [dm6]	G	A	2.977e^-4	0.896	SYNONYMOUS_CODING CG14967 DOWNSTREAM gry	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10936068	2L_10936068_SNP [dm3] 2L_10936068_SNP [dm6]	G	C	2.979e^-4	0.896	UPSTREAM CG14072 INTRON dpr2
3L	12329557	3L_12329557_SNP [dm3] 3L_12336457_SNP [dm6]	T	A	2.982e^-4	0.896	UPSTREAM CG10418 & 1 other DOWNSTREAM CG32105 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	7719526	3R_7719526_SNP [dm3] 3R_11893804_SNP [dm6]	G	C	2.987e^-4	0.896	UTR_3_PRIME Cad87A UPSTREAM CG6971
2L	15119635	2L_15119635_SNP [dm3] 2L_15119635_SNP [dm6]	A	T	2.990e^-4	0.896	UPSTREAM CR43853 INTERGENIC
3L	16146323	3L_16146323_INS [dm3] 3L_16153223_INS [dm6]	T	TT	2.993e^-4	0.896	INTRON CG5151
2L	12079255	2L_12079255_SNP [dm3] 2L_12079255_SNP [dm6]	T	G	2.994e^-4	0.896	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	9811104	2R_9811104_SNP [dm3] 2R_13923599_SNP [dm6]	C	T	3.000e^-4	0.896	INTRON shot	TF binding site BDTNP1_TFBS_dl
2R	8929184	2R_8929184_SNP [dm3] 2R_13041679_SNP [dm6]	T	C	3.003e^-4	0.896	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3R	18441295	3R_18441295_SNP [dm3] 3R_22615573_SNP [dm6]	G	A	3.004e^-4	0.896	SYNONYMOUS_CODING EF-G2 UPSTREAM CG31161
3R	21399089	3R_21399089_SNP [dm3] 3R_25573367_SNP [dm6]	T	C	3.005e^-4	0.896	INTRON msi
2L	2741158	2L_2741158_SNP [dm3] 2L_2741158_SNP [dm6]	G	A	3.006e^-4	0.896	SYNONYMOUS_CODING Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21398976	3R_21398976_SNP [dm3] 3R_25573254_SNP [dm6]	A	G	3.006e^-4	0.896	INTRON msi
3R	9932632	3R_9932632_SNP [dm3] 3R_14106910_SNP [dm6]	T	G	3.007e^-4	0.896	NON_SYNONYMOUS_CODING CG12402	TF binding site mE1_TFBS_sens
3L	8136748	3L_8136748_SNP [dm3] 3L_8143648_SNP [dm6]	G	A	3.011e^-4	0.896	SYNONYMOUS_CODING CG13676	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16721883	2R_16721883_SNP [dm3] 2R_20834378_SNP [dm6]	T	A	3.017e^-4	0.896	INTRON insc & 1 other
2R	9120172	2R_9120172_SNP [dm3] 2R_13232667_SNP [dm6]	C	T	3.018e^-4	0.896	INTRON CG4670	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	13932677	3R_13932677_SNP [dm3] 3R_18106955_SNP [dm6]	G	A	3.033e^-4	0.896	INTRON sr
2R	18299347	2R_18299347_SNP [dm3] 2R_22411842_SNP [dm6]	T	C	3.033e^-4	0.896	UTR_5_PRIME Mes4 UPSTREAM qkr58E-3 DOWNSTREAM qkr58E-1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	1917786	3L_1917786_SNP [dm3] 3L_1917786_SNP [dm6]	G	C	3.046e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8946387	3R_8946387_SNP [dm3] 3R_13120665_SNP [dm6]	C	A	3.049e^-4	0.896	INTRON timeout
X	6478810	X_6478810_SNP [dm3] X_6584777_SNP [dm6]	C	T	3.054e^-4	0.896	UTR_3_PRIME CG34417 INTRON CG34417
X	6562903	X_6562903_SNP [dm3] X_6668870_SNP [dm6]	A	G	3.062e^-4	0.896	UTR_3_PRIME CG3198 DOWNSTREAM Ctr1A	TF binding site BDTNP1_TFBS_dl
2R	12667820	2R_12667820_SNP [dm3] 2R_16780315_SNP [dm6]	T	C	3.077e^-4	0.896	UTR_5_PRIME resilin UPSTREAM resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	5551416	2L_5551416_INS [dm3] 2L_5551416_INS [dm6]	T	TTAT	3.079e^-4	0.896	UPSTREAM CG14014 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18945965	3L_18945965_SNP [dm3] 3L_18952865_SNP [dm6]	G	A	3.081e^-4	0.896	INTRON CG6836
3R	10166848	3R_10166848_SNP [dm3] 3R_14341126_SNP [dm6]	C	G	3.082e^-4	0.896	INTRON NK7.1
X	7015797	X_7015797_INS [dm3] X_7121764_INS [dm6]	A	AA	3.092e^-4	0.896	INTERGENIC
3L	10207764	3L_10207764_SNP [dm3] 3L_10214664_SNP [dm6]	C	T	3.097e^-4	0.896	INTERGENIC
3R	21385282	3R_21385282_SNP [dm3] 3R_25559560_SNP [dm6]	T	A	3.097e^-4	0.896	INTRON msi
3R	4960073	3R_4960073_SNP [dm3] 3R_9134351_SNP [dm6]	C	T	3.101e^-4	0.896	INTRON pum
2L	7215691	2L_7215691_SNP [dm3] 2L_7215691_SNP [dm6]	T	C	3.104e^-4	0.896	INTRON CG13784
3L	8307853	3L_8307853_SNP [dm3] 3L_8314753_SNP [dm6]	G	C	3.109e^-4	0.896	INTRON CG7185	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	9811093	2R_9811093_SNP [dm3] 2R_13923588_SNP [dm6]	A	T	3.125e^-4	0.896	INTRON shot	TF binding site BDTNP1_TFBS_dl
2L	10377754	2L_10377754_SNP [dm3] 2L_10377754_SNP [dm6]	T	A	3.126e^-4	0.896	INTRON dpr19	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18930306	2R_18930306_SNP [dm3] 2R_23042783_SNP [dm6]	G	T	3.136e^-4	0.896	START_GAINED CG42741 UTR_5_PRIME CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16251281	X_16251281_SNP [dm3] X_16357248_SNP [dm6]	T	C	3.138e^-4	0.896	DOWNSTREAM sl INTRON U2af50	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	16901233	X_16901233_DEL [dm3] X_17007200_DEL [dm6]	AAAA	A	3.141e^-4	0.896	INTRON CG45002
3R	18335780	3R_18335780_SNP [dm3] 3R_22510058_SNP [dm6]	G	A	3.142e^-4	0.896	SYNONYMOUS_CODING Octbeta1R
2R	14747945	2R_14747945_SNP [dm3] 2R_18860440_SNP [dm6]	A	G	3.145e^-4	0.896	SYNONYMOUS_CODING Jheh3	TF binding site mE1_TFBS_cad
3L	3791339	3L_3791339_SNP [dm3] 3L_3791339_SNP [dm6]	A	T	3.153e^-4	0.896	UTR_3_PRIME CG32266 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16930606	3R_16930606_SNP [dm3] 3R_21104884_SNP [dm6]	C	T	3.156e^-4	0.896	SPLICE_SITE_REGION CG5745 SYNONYMOUS_CODING CG5745 DOWNSTREAM Sec15
X	6451169	X_6451169_SNP [dm3] X_6557136_SNP [dm6]	A	T	3.159e^-4	0.896	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	16153554	2R_16153554_SNP [dm3] 2R_20266049_SNP [dm6]	C	T	3.160e^-4	0.896	SYNONYMOUS_CODING CG8908 UPSTREAM CR43812	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	17835303	X_17835303_DEL [dm3] X_17941270_DEL [dm6]	GTG	G	3.186e^-4	0.896	INTRON Sh	TF binding site BDTNP1_TFBS_dl
2L	9532970	2L_9532970_SNP [dm3] 2L_9532970_SNP [dm6]	T	A	3.188e^-4	0.896	INTRON Oatp30B
3R	8910436	3R_8910436_DEL [dm3] 3R_13084714_DEL [dm6]	ATAA	G	3.191e^-4	0.896	UPSTREAM CR44967 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	17470234	3L_17470234_SNP [dm3] 3L_17477134_SNP [dm6]	T	C	3.201e^-4	0.896	DOWNSTREAM CG34250 & 1 other INTERGENIC
3R	25594783	3R_25594783_SNP [dm3] 3R_29769061_SNP [dm6]	T	C	3.211e^-4	0.896	INTRON kay
3R	15278253	3R_15278253_SNP [dm3] 3R_19452531_SNP [dm6]	A	T	3.214e^-4	0.896	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	15993728	3R_15993728_SNP [dm3] 3R_20168006_SNP [dm6]	T	C	3.224e^-4	0.896	INTERGENIC
3R	21179623	3R_21179623_SNP [dm3] 3R_25353901_SNP [dm6]	G	C	3.230e^-4	0.896	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10791534	3L_10791534_SNP [dm3] 3L_10798434_SNP [dm6]	G	A	3.235e^-4	0.896	INTERGENIC
X	4777401	X_4777401_SNP [dm3] X_4883368_SNP [dm6]	G	A	3.243e^-4	0.896	INTRON CG42594
X	6275818	X_6275818_SNP [dm3] X_6381785_SNP [dm6]	T	C	3.248e^-4	0.896	INTERGENIC
2L	17442806	2L_17442806_SNP [dm3] 2L_17442806_SNP [dm6]	T	G	3.258e^-4	0.896	SYNONYMOUS_CODING dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10215175	2L_10215175_SNP [dm3] 2L_10215175_SNP [dm6]	G	T	3.261e^-4	0.896	NON_SYNONYMOUS_CODING Npc1a
3R	21437755	3R_21437755_SNP [dm3] 3R_25612033_SNP [dm6]	A	G	3.266e^-4	0.896	INTRON Npl4
2R	11102997	2R_11102997_SNP [dm3] 2R_15215492_SNP [dm6]	G	T	3.274e^-4	0.896	UPSTREAM CG11808 INTRON CG8093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	8945304	3R_8945304_SNP [dm3] 3R_13119582_SNP [dm6]	A	G	3.282e^-4	0.896	INTRON timeout
2R	8471128	2R_8471128_SNP [dm3] 2R_12583623_SNP [dm6]	G	T	3.300e^-4	0.896	SYNONYMOUS_CODING Sin3A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17033283	2R_17033283_SNP [dm3] 2R_21145778_SNP [dm6]	C	A	3.312e^-4	0.896	UPSTREAM Hmg-2 DOWNSTREAM Xbp1 INTERGENIC
3R	16941260	3R_16941260_SNP [dm3] 3R_21115538_SNP [dm6]	A	G	3.315e^-4	0.896	UTR_3_PRIME Rab11 UPSTREAM ppan
3L	17170777	3L_17170777_SNP [dm3] 3L_17177677_SNP [dm6]	C	G	3.321e^-4	0.896	INTRON Rbp6
3L	9975914	3L_9975914_SNP [dm3] 3L_9982814_SNP [dm6]	G	T	3.322e^-4	0.896	INTRON dpr6
3R	14391093	3R_14391093_SNP [dm3] 3R_18565371_SNP [dm6]	A	G	3.323e^-4	0.896	UPSTREAM CG43210 & 1 other INTERGENIC
3R	15825901	3R_15825901_INS [dm3] 3R_20000179_INS [dm6]	A	AA	3.329e^-4	0.896	INTRON Hs6st
3R	9535245	3R_9535245_SNP [dm3] 3R_13709523_SNP [dm6]	G	C	3.333e^-4	0.896	NON_SYNONYMOUS_CODING CG31469 DOWNSTREAM primo-2 & 2 others
3R	14163170	3R_14163170_DEL [dm3] 3R_18337448_DEL [dm6]	GATTGCAC	TCCT	3.345e^-4	0.896	INTRON CG15803
3L	16168892	3L_16168892_SNP [dm3] 3L_16175792_SNP [dm6]	G	T	3.356e^-4	0.896	INTERGENIC
3L	9343443	3L_9343443_SNP [dm3] 3L_9350343_SNP [dm6]	C	A	3.360e^-4	0.896	DOWNSTREAM UGP INTRON PGRP-LF
2R	16733273	2R_16733273_SNP [dm3] 2R_20845768_SNP [dm6]	G	T	3.362e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13875434	2L_13875434_DEL [dm3] 2L_13875434_DEL [dm6]	AA	A	3.364e^-4	0.896	INTRON CenG1A
3R	15175810	3R_15175810_SNP [dm3] 3R_19350088_SNP [dm6]	G	A	3.364e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10937591	2L_10937591_SNP [dm3] 2L_10937591_SNP [dm6]	A	G	3.365e^-4	0.896	NON_SYNONYMOUS_CODING CG14072 INTRON dpr2
3R	24484014	3R_24484014_SNP [dm3] 3R_28658292_SNP [dm6]	G	C	3.369e^-4	0.896	INTERGENIC
2L	8893519	2L_8893519_SNP [dm3] 2L_8893519_SNP [dm6]	C	T	3.379e^-4	0.896	INTERGENIC
2L	839334	2L_839334_SNP [dm3] 2L_839334_SNP [dm6]	C	T	3.383e^-4	0.896	INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19367815	2R_19367815_SNP [dm3] 2R_23480292_SNP [dm6]	G	T	3.387e^-4	0.896	INTRON CG43795
3L	4137198	3L_4137198_SNP [dm3] 3L_4137198_SNP [dm6]	T	C	3.387e^-4	0.896	SYNONYMOUS_CODING Rop	TF binding site mE1_TFBS_cad
3L	3636251	3L_3636251_SNP [dm3] 3L_3636251_SNP [dm6]	A	T	3.396e^-4	0.896	INTRON dar1
3L	10791531	3L_10791531_SNP [dm3] 3L_10798431_SNP [dm6]	A	C	3.399e^-4	0.896	INTERGENIC
3L	6046390	3L_6046390_SNP [dm3] 3L_6053290_SNP [dm6]	T	C	3.409e^-4	0.896	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
2R	14810179	2R_14810179_SNP [dm3] 2R_18922674_SNP [dm6]	A	T	3.410e^-4	0.896	INTRON sano
2L	19682469	2L_19682469_SNP [dm3] 2L_19682469_SNP [dm6]	G	C	3.415e^-4	0.896	INTRON Lar
3L	19036289	3L_19036289_SNP [dm3] 3L_19043189_SNP [dm6]	C	G	3.415e^-4	0.896	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4338775	X_4338775_SNP [dm3] X_4444742_SNP [dm6]	G	T	3.416e^-4	0.896	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	16479236	2R_16479236_SNP [dm3] 2R_20591731_SNP [dm6]	C	T	3.427e^-4	0.896	INTRON bl	TF binding site BDTNP1_TFBS_dl
3R	19088141	3R_19088141_SNP [dm3] 3R_23262419_SNP [dm6]	T	C	3.429e^-4	0.896	UTR_3_PRIME orb
3R	24310013	3R_24310013_SNP [dm3] 3R_28484291_SNP [dm6]	T	A	3.431e^-4	0.896	UPSTREAM CG1894 INTERGENIC
X	17449406	X_17449406_SNP [dm3] X_17555373_SNP [dm6]	A	G	3.450e^-4	0.896	INTRON CG43658
3L	16168832	3L_16168832_DEL [dm3] 3L_16175732_DEL [dm6]	TTTT	T	3.452e^-4	0.896	INTERGENIC
2R	18570930	2R_18570930_SNP [dm3] 2R_22683425_SNP [dm6]	C	T	3.455e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3L	3329628	3L_3329628_SNP [dm3] 3L_3329628_SNP [dm6]	G	T	3.458e^-4	0.896	UPSTREAM CG11526 & 1 other DOWNSTREAM CR45380 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3692483	2L_3692483_SNP [dm3] 2L_3692483_SNP [dm6]	T	C	3.460e^-4	0.896	NON_SYNONYMOUS_CODING CG16704 DOWNSTREAM CG3513 & 2 others
2L	2099596	2L_2099596_SNP [dm3] 2L_2099596_SNP [dm6]	T	C	3.461e^-4	0.896	INTRON dpr3
3R	14952784	3R_14952784_SNP [dm3] 3R_19127062_SNP [dm6]	T	C	3.461e^-4	0.896	SYNONYMOUS_CODING CG6040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17471921	3L_17471921_SNP [dm3] 3L_17478821_SNP [dm6]	G	C	3.463e^-4	0.896	START_GAINED CG13733 UTR_5_PRIME CG13733 UPSTREAM qjt
2L	1495513	2L_1495513_SNP [dm3] 2L_1495513_SNP [dm6]	G	T	3.463e^-4	0.896	START_GAINED CG31926 UTR_5_PRIME CG31926 UPSTREAM CG31926 DOWNSTREAM CG33128
3L	6119144	3L_6119144_SNP [dm3] 3L_6126044_SNP [dm6]	T	C	3.467e^-4	0.896	INTRON l_3_mbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13587980	2R_13587980_SNP [dm3] 2R_17700475_SNP [dm6]	G	A	3.468e^-4	0.896	UPSTREAM snoRNA:U76:54Eb & 3 others DOWNSTREAM snoRNA:Me28S-A3407a & 2 others INTRON Uhg1 EXON snoRNA:U29:54Ec
X	16251282	X_16251282_SNP [dm3] X_16357249_SNP [dm6]	T	G	3.473e^-4	0.896	DOWNSTREAM sl INTRON U2af50	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	14747903	2R_14747903_SNP [dm3] 2R_18860398_SNP [dm6]	T	C	3.479e^-4	0.896	SYNONYMOUS_CODING Jheh3	TF binding site mE1_TFBS_cad
3R	25763023	3R_25763023_SNP [dm3] 3R_29937301_SNP [dm6]	G	A	3.479e^-4	0.896	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21888648	X_21888648_SNP [dm3] X_22486812_SNP [dm6]	T	G	3.512e^-4	0.896	UPSTREAM l_1_G0196 DOWNSTREAM Cp110 INTRON Cp110
3R	21391476	3R_21391476_INS [dm3] 3R_25565754_INS [dm6]	G	CCTGAA	3.514e^-4	0.896	INTRON msi
3L	14808696	3L_14808696_SNP [dm3] 3L_14815596_SNP [dm6]	T	C	3.515e^-4	0.896	INTRON CG17839
3L	20137558	3L_20137558_DEL [dm3] 3L_20144458_DEL [dm6]	TATGCACAA	T	3.519e^-4	0.896	INTERGENIC
X	12498646	X_12498646_SNP [dm3] X_12604613_SNP [dm6]	A	G	3.520e^-4	0.896	INTRON Sec16	TF binding site mE1_TFBS_cad
2R	12319615	2R_12319615_SNP [dm3] 2R_16432110_SNP [dm6]	A	G	3.521e^-4	0.896	UPSTREAM CG4398 DOWNSTREAM Sema-2b INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9949469	3R_9949469_SNP [dm3] 3R_14123747_SNP [dm6]	G	A	3.522e^-4	0.896	SYNONYMOUS_CODING twf DOWNSTREAM 140up	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16194082	3R_16194082_SNP [dm3] 3R_20368360_SNP [dm6]	A	G	3.530e^-4	0.896	INTERGENIC
2L	10935978	2L_10935978_SNP [dm3] 2L_10935978_SNP [dm6]	A	C	3.533e^-4	0.896	UPSTREAM CG14072 INTRON dpr2
3L	6046392	3L_6046392_INS [dm3] 3L_6053292_INS [dm6]	T	TT	3.534e^-4	0.896	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
3R	18101864	3R_18101864_SNP [dm3] 3R_22276142_SNP [dm6]	C	G	3.535e^-4	0.896	INTRON SKIP
3R	9138651	3R_9138651_SNP [dm3] 3R_13312929_SNP [dm6]	T	G	3.556e^-4	0.896	NON_SYNONYMOUS_CODING CG44142 DOWNSTREAM CG32473
2R	7640039	2R_7640039_SNP [dm3] 2R_11752534_SNP [dm6]	G	C	3.556e^-4	0.896	INTERGENIC
3R	11355721	3R_11355721_SNP [dm3] 3R_15529999_SNP [dm6]	A	G	3.562e^-4	0.896	DOWNSTREAM CG31296 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15278255	3R_15278255_SNP [dm3] 3R_19452533_SNP [dm6]	G	A	3.567e^-4	0.896	INTRON CG31221	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	7882433	X_7882433_SNP [dm3] X_7988400_SNP [dm6]	T	C	3.567e^-4	0.896	INTERGENIC
3R	16903824	3R_16903824_SNP [dm3] 3R_21078102_SNP [dm6]	C	T	3.568e^-4	0.896	INTRON HHEX
3L	15681060	3L_15681060_SNP [dm3] 3L_15687960_SNP [dm6]	A	G	3.586e^-4	0.896	UPSTREAM CG34452 DOWNSTREAM CG34451 INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15179517	3R_15179517_SNP [dm3] 3R_19353795_SNP [dm6]	G	A	3.587e^-4	0.896	UPSTREAM CG43203 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3R	364566	3R_364566_SNP [dm3] 3R_4538844_SNP [dm6]	A	T	3.589e^-4	0.896	INTRON CG34357
3L	18368386	3L_18368386_SNP [dm3] 3L_18375286_SNP [dm6]	A	G	3.595e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3980822	2R_3980822_SNP [dm3] 2R_8093317_SNP [dm6]	C	T	3.614e^-4	0.896	INTRON CG8713
3L	17458604	3L_17458604_SNP [dm3] 3L_17465504_SNP [dm6]	A	T	3.616e^-4	0.896	UPSTREAM CG7603 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	19768356	3R_19768356_SNP [dm3] 3R_23942634_SNP [dm6]	G	A	3.622e^-4	0.896	SYNONYMOUS_CODING Gdh DOWNSTREAM CG12268	TF binding site BDTNP1_TFBS_twi
3L	14372680	3L_14372680_SNP [dm3] 3L_14379580_SNP [dm6]	T	C	3.628e^-4	0.896	INTERGENIC
2L	12354418	2L_12354418_SNP [dm3] 2L_12354418_SNP [dm6]	C	A	3.642e^-4	0.896	INTRON bru-2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6215035	2L_6215035_SNP [dm3] 2L_6215035_SNP [dm6]	T	C	3.643e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4885605	3L_4885605_SNP [dm3] 3L_4885605_SNP [dm6]	C	T	3.651e^-4	0.896	INTRON CG17150	TF binding site mE1_TFBS_inv
3L	14939915	3L_14939915_SNP [dm3] 3L_14946815_SNP [dm6]	T	C	3.665e^-4	0.896	UPSTREAM BobA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	4909636	3R_4909636_DEL [dm3] 3R_9083914_DEL [dm6]	GG	G	3.680e^-4	0.896	INTRON pum
3L	12327109	3L_12327109_DEL [dm3] 3L_12334009_DEL [dm6]	CTTT	G	3.681e^-4	0.896	INTRON CG32105
3L	6119185	3L_6119185_SNP [dm3] 3L_6126085_SNP [dm6]	C	A	3.686e^-4	0.896	INTRON l_3_mbn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8440538	2L_8440538_SNP [dm3] 2L_8440538_SNP [dm6]	A	G	3.690e^-4	0.896	SYNONYMOUS_CODING mus201
2R	10528045	2R_10528045_INS [dm3] 2R_14640540_INS [dm6]	C	CTAGTGTACT	3.694e^-4	0.896	DOWNSTREAM CG42715 INTRON CG12862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9682360	2L_9682360_SNP [dm3] 2L_9682360_SNP [dm6]	T	C	3.701e^-4	0.896	UTR_3_PRIME Pka-C1
X	5724251	X_5724251_SNP [dm3] X_5830218_SNP [dm6]	A	G	3.716e^-4	0.896	INTRON CG15765
3R	26497437	3R_26497437_INS [dm3] 3R_30671715_INS [dm6]	A	AAA	3.735e^-4	0.896	INTERGENIC
3R	18137110	3R_18137110_SNP [dm3] 3R_22311388_SNP [dm6]	C	T	3.735e^-4	0.896	UTR_3_PRIME CG34377
2R	19673558	2R_19673558_SNP [dm3] 2R_23786035_SNP [dm6]	G	A	3.747e^-4	0.896	SYNONYMOUS_CODING CG9850
X	19759785	X_19759785_SNP [dm3] X_19865752_SNP [dm6]	A	T	3.752e^-4	0.896	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_Ubx
3L	7751364	3L_7751364_SNP [dm3] 3L_7758264_SNP [dm6]	T	G	3.759e^-4	0.896	NON_SYNONYMOUS_CODING CG32373	TF binding site mE1_TFBS_HSA
3R	16915731	3R_16915731_SNP [dm3] 3R_21090009_SNP [dm6]	T	A	3.761e^-4	0.896	INTRON RhoGAP93B & 1 other
X	14258149	X_14258149_SNP [dm3] X_14364116_SNP [dm6]	C	T	3.765e^-4	0.896	INTRON dpr8
X	630128	X_630128_SNP [dm3] X_736095_SNP [dm6]	T	C	3.765e^-4	0.896	INTRON sdk
3L	12381139	3L_12381139_SNP [dm3] 3L_12388039_SNP [dm6]	A	C	3.775e^-4	0.896	UPSTREAM Ncc69 INTRON Ncc69
3L	12381141	3L_12381141_DEL [dm3] 3L_12388041_DEL [dm6]	AAT	C	3.775e^-4	0.896	UPSTREAM Ncc69 INTRON Ncc69
3R	8908778	3R_8908778_SNP [dm3] 3R_13083056_SNP [dm6]	C	A	3.777e^-4	0.896	INTERGENIC
3R	8953575	3R_8953575_SNP [dm3] 3R_13127853_SNP [dm6]	C	T	3.778e^-4	0.896	NON_SYNONYMOUS_CODING 2mit INTRON timeout
X	21894951	X_21894951_SNP [dm3] X_22493115_SNP [dm6]	A	G	3.785e^-4	0.896	INTRON l_1_G0196
2R	12862514	2R_12862514_SNP [dm3] 2R_16975009_SNP [dm6]	C	T	3.790e^-4	0.896	INTRON Cbp53E
3L	989707	3L_989707_SNP [dm3] 3L_989707_SNP [dm6]	G	A	3.791e^-4	0.896	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11903943	3R_11903943_SNP [dm3] 3R_16078221_SNP [dm6]	G	A	3.804e^-4	0.896	DOWNSTREAM CG32855 INTRON Mhcl
3R	14718664	3R_14718664_SNP [dm3] 3R_18892942_SNP [dm6]	A	G	3.808e^-4	0.896	INTERGENIC
3L	11241864	3L_11241864_SNP [dm3] 3L_11248764_SNP [dm6]	T	A	3.808e^-4	0.896	UPSTREAM CR44715 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	14747804	2R_14747804_SNP [dm3] 2R_18860299_SNP [dm6]	T	C	3.810e^-4	0.896	DOWNSTREAM Jheh3 INTERGENIC	TF binding site mE1_TFBS_cad
3L	18576201	3L_18576201_SNP [dm3] 3L_18583101_SNP [dm6]	C	A	3.818e^-4	0.896	UPSTREAM CR45435 INTERGENIC
2L	14618515	2L_14618515_SNP [dm3] 2L_14618515_SNP [dm6]	T	A	3.823e^-4	0.896	INTRON osp & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3418801	X_3418801_SNP [dm3] X_3524768_SNP [dm6]	A	G	3.833e^-4	0.896	INTRON CG32791
3L	15358464	3L_15358464_SNP [dm3] 3L_15365364_SNP [dm6]	T	A	3.838e^-4	0.896	INTERGENIC
2L	12748997	2L_12748997_SNP [dm3] 2L_12748997_SNP [dm6]	T	C	3.843e^-4	0.896	INTERGENIC
2R	970169	2R_970169_SNP [dm3] 2R_5082664_SNP [dm6]	A	T	3.846e^-4	0.896	UPSTREAM CR43360 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12161185	2L_12161185_INS [dm3] 2L_12161185_INS [dm6]	A	AA	3.855e^-4	0.896	UPSTREAM CG31861 INTRON CG31760
2R	16355533	2R_16355533_SNP [dm3] 2R_20468028_SNP [dm6]	G	A	3.855e^-4	0.896	INTRON CG12484
3L	2328960	3L_2328960_SNP [dm3] 3L_2328960_SNP [dm6]	T	C	3.860e^-4	0.896	INTRON MsR1
X	8427003	X_8427003_SNP [dm3] X_8532970_SNP [dm6]	A	T	3.868e^-4	0.896	INTRON Nrg
2L	20053704	2L_20053704_SNP [dm3] 2L_20053704_SNP [dm6]	A	C	3.872e^-4	0.896	INTRON sNPF
3R	16727859	3R_16727859_SNP [dm3] 3R_20902137_SNP [dm6]	T	A	3.884e^-4	0.896	NON_SYNONYMOUS_CODING CG5621
X	15655876	X_15655876_SNP [dm3] X_15761843_SNP [dm6]	T	C	3.885e^-4	0.896	SYNONYMOUS_CODING mRpL3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17635829	3L_17635829_SNP [dm3] 3L_17642729_SNP [dm6]	T	A	3.892e^-4	0.896	INTRON Pep	TF binding site BDTNP1_TFBS_dl
3R	21399086	3R_21399086_SNP [dm3] 3R_25573364_SNP [dm6]	A	C	3.892e^-4	0.896	INTRON msi
2R	8349002	2R_8349002_SNP [dm3] 2R_12461497_SNP [dm6]	C	T	3.897e^-4	0.896	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	17001589	2R_17001589_SNP [dm3] 2R_21114084_SNP [dm6]	T	G	3.908e^-4	0.896	INTRON ktub
2L	12849653	2L_12849653_SNP [dm3] 2L_12849653_SNP [dm6]	G	T	3.908e^-4	0.896	INTERGENIC
2L	16442382	2L_16442382_DEL [dm3] 2L_16442382_DEL [dm6]	GTTG	C	3.912e^-4	0.896	INTRON CG5888
2R	977056	2R_977056_SNP [dm3] 2R_5089551_SNP [dm6]	G	A	3.917e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3R	21399081	3R_21399081_DEL [dm3] 3R_25573359_DEL [dm6]	AG	A	3.940e^-4	0.896	INTRON msi
X	7238592	X_7238592_SNP [dm3] X_7344559_SNP [dm6]	G	A	3.940e^-4	0.896	INTRON CR44357 & 1 other
3R	26414289	3R_26414289_SNP [dm3] 3R_30588567_SNP [dm6]	T	C	3.949e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21391134	3R_21391134_SNP [dm3] 3R_25565412_SNP [dm6]	C	A	3.951e^-4	0.896	INTRON msi
3R	21391180	3R_21391180_DEL [dm3] 3R_25565458_DEL [dm6]	TTG	CA	3.951e^-4	0.896	INTRON msi
3R	21391190	3R_21391190_SNP [dm3] 3R_25565468_SNP [dm6]	C	T	3.951e^-4	0.896	INTRON msi
2R	13131254	2R_13131254_INS [dm3] 2R_17243749_INS [dm6]	T	TT	3.957e^-4	0.896	INTRON mbl
3R	23284781	3R_23284781_SNP [dm3] 3R_27459059_SNP [dm6]	T	C	3.958e^-4	0.896	INTERGENIC
3L	5752077	3L_5752077_SNP [dm3] 3L_5758977_SNP [dm6]	A	C	3.963e^-4	0.896	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19432383	3L_19432383_SNP [dm3] 3L_19439283_SNP [dm6]	A	T	3.967e^-4	0.896	DOWNSTREAM CR45732 INTERGENIC
2L	2322615	2L_2322615_SNP [dm3] 2L_2322615_SNP [dm6]	G	C	3.973e^-4	0.896	INTRON CG9967 & 1 other
2L	11847563	2L_11847563_SNP [dm3] 2L_11847563_SNP [dm6]	C	T	3.987e^-4	0.896	SYNONYMOUS_CODING Mal-B1 INTRON Pde1c
3R	26409090	3R_26409090_SNP [dm3] 3R_30583368_SNP [dm6]	A	G	4.002e^-4	0.896	DOWNSTREAM CG9717 INTRON Rpt6R	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	14254117	X_14254117_SNP [dm3] X_14360084_SNP [dm6]	C	A	4.007e^-4	0.896	INTRON dpr8
3R	21399126	3R_21399126_SNP [dm3] 3R_25573404_SNP [dm6]	A	G	4.009e^-4	0.896	INTRON msi
2R	15212680	2R_15212680_SNP [dm3] 2R_19325175_SNP [dm6]	G	A	4.025e^-4	0.896	INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21892655	3R_21892655_SNP [dm3] 3R_26066933_SNP [dm6]	G	T	4.034e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	12359264	X_12359264_SNP [dm3] X_12465231_SNP [dm6]	A	T	4.042e^-4	0.896	INTRON CG42258
3L	14808666	3L_14808666_SNP [dm3] 3L_14815566_SNP [dm6]	G	A	4.045e^-4	0.896	INTRON CG17839
3R	22017816	3R_22017816_SNP [dm3] 3R_26192094_SNP [dm6]	A	G	4.051e^-4	0.896	UPSTREAM CG34129 INTERGENIC
3R	14613771	3R_14613771_SNP [dm3] 3R_18788049_SNP [dm6]	G	T	4.064e^-4	0.896	INTRON CG7720
2L	9118584	2L_9118584_SNP [dm3] 2L_9118584_SNP [dm6]	G	T	4.065e^-4	0.896	UPSTREAM CR44617 INTERGENIC
3R	8912104	3R_8912104_SNP [dm3] 3R_13086382_SNP [dm6]	T	C	4.067e^-4	0.896	SYNONYMOUS_CODING CG43063 DOWNSTREAM CR44967
2R	19364505	2R_19364505_SNP [dm3] 2R_23476982_SNP [dm6]	G	C	4.070e^-4	0.896	UPSTREAM CG13557 DOWNSTREAM CR43793 INTRON CG43795 EXON CR43792
2L	3214172	2L_3214172_SNP [dm3] 2L_3214172_SNP [dm6]	C	T	4.075e^-4	0.896	INTERGENIC
2L	9532802	2L_9532802_SNP [dm3] 2L_9532802_SNP [dm6]	A	T	4.079e^-4	0.896	INTRON Oatp30B
3L	1359912	3L_1359912_INS [dm3] 3L_1359912_INS [dm6]	A	AA	4.082e^-4	0.896	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1495495	2L_1495495_SNP [dm3] 2L_1495495_SNP [dm6]	C	A	4.083e^-4	0.896	UTR_5_PRIME CG31926 UPSTREAM CG31926 DOWNSTREAM CG33128
2R	18200592	2R_18200592_SNP [dm3] 2R_22313087_SNP [dm6]	T	C	4.084e^-4	0.896	INTRON CR44758
3L	14831970	3L_14831970_SNP [dm3] 3L_14838870_SNP [dm6]	C	G	4.084e^-4	0.896	INTRON CG17839
2R	19365361	2R_19365361_SNP [dm3] 2R_23477838_SNP [dm6]	C	T	4.098e^-4	0.896	UPSTREAM CR43793 DOWNSTREAM CR43792 INTRON CG43795
3L	1771630	3L_1771630_SNP [dm3] 3L_1771630_SNP [dm6]	C	T	4.109e^-4	0.896	SYNONYMOUS_CODING Dhc62B DOWNSTREAM CG13933	TF binding site mE1_TFBS_chinmo
3R	8915027	3R_8915027_SNP [dm3] 3R_13089305_SNP [dm6]	C	A	4.126e^-4	0.896	UTR_5_PRIME CG34308 INTRON timeout	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22858908	3R_22858908_SNP [dm3] 3R_27033186_SNP [dm6]	A	T	4.128e^-4	0.896	INTRON RYa-R
3L	12994053	3L_12994053_SNP [dm3] 3L_13000953_SNP [dm6]	A	G	4.129e^-4	0.896	INTERGENIC
3R	25469722	3R_25469722_SNP [dm3] 3R_29644000_SNP [dm6]	G	A	4.132e^-4	0.896	INTRON Dop1R2
2L	12749071	2L_12749071_SNP [dm3] 2L_12749071_SNP [dm6]	G	A	4.138e^-4	0.896	INTERGENIC
X	8811161	X_8811161_SNP [dm3] X_8917128_SNP [dm6]	A	G	4.144e^-4	0.896	INTRON rdgA
3L	22472828	3L_22472828_SNP [dm3] 3L_22479728_SNP [dm6]	C	A	4.152e^-4	0.896	INTERGENIC
X	10050826	X_10050826_SNP [dm3] X_10156793_SNP [dm6]	A	T	4.169e^-4	0.896	INTRON CR44894
X	2662809	X_2662809_INS [dm3] X_2768776_INS [dm6]	T	TGCTT	4.188e^-4	0.896	INTRON kirre
3R	25555112	3R_25555112_SNP [dm3] 3R_29729390_SNP [dm6]	C	T	4.190e^-4	0.896	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	5452775	X_5452775_SNP [dm3] X_5558742_SNP [dm6]	A	G	4.190e^-4	0.896	INTRON Vsx2
3L	8136862	3L_8136862_SNP [dm3] 3L_8143762_SNP [dm6]	G	T	4.195e^-4	0.896	SYNONYMOUS_CODING CG13676	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14745765	2R_14745765_SNP [dm3] 2R_18858260_SNP [dm6]	G	T	4.196e^-4	0.896	UPSTREAM Jheh2 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6046368	3L_6046368_DEL [dm3] 3L_6053268_DEL [dm6]	CT	G	4.205e^-4	0.896	DOWNSTREAM Jon65Ai & 1 other INTERGENIC
2R	7640059	2R_7640059_SNP [dm3] 2R_11752554_SNP [dm6]	G	A	4.215e^-4	0.896	INTERGENIC
X	5566677	X_5566677_SNP [dm3] X_5672644_SNP [dm6]	G	A	4.221e^-4	0.896	UPSTREAM RpL35 & 1 other INTRON RpL35	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	21399125	3R_21399125_SNP [dm3] 3R_25573403_SNP [dm6]	T	C	4.228e^-4	0.896	INTRON msi
3R	10500465	3R_10500465_SNP [dm3] 3R_14674743_SNP [dm6]	A	C	4.231e^-4	0.896	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	8750495	2L_8750495_SNP [dm3] 2L_8750495_SNP [dm6]	A	T	4.236e^-4	0.896	INTERGENIC
X	13701999	X_13701999_SNP [dm3] X_13807966_SNP [dm6]	T	A	4.238e^-4	0.896	DOWNSTREAM inaE INTRON inaE
3L	16877254	3L_16877254_SNP [dm3] 3L_16884154_SNP [dm6]	A	C	4.240e^-4	0.896	INTRON Lmpt
3R	11218588	3R_11218588_SNP [dm3] 3R_15392866_SNP [dm6]	T	G	4.240e^-4	0.896	INTRON Rbp
3R	8024101	3R_8024101_SNP [dm3] 3R_12198379_SNP [dm6]	T	C	4.240e^-4	0.896	SYNONYMOUS_CODING CG3809
X	16823042	X_16823042_INS [dm3] X_16929009_INS [dm6]	A	AAA	4.251e^-4	0.896	INTRON CG4928
3L	14806385	3L_14806385_SNP [dm3] 3L_14813285_SNP [dm6]	G	A	4.253e^-4	0.896	INTRON CG17839
3L	11134617	3L_11134617_SNP [dm3] 3L_11141517_SNP [dm6]	T	G	4.260e^-4	0.896	INTRON CG32082
2L	15119654	2L_15119654_SNP [dm3] 2L_15119654_SNP [dm6]	T	A	4.280e^-4	0.896	UPSTREAM CR43853 INTERGENIC
2L	17897499	2L_17897499_SNP [dm3] 2L_17897499_SNP [dm6]	C	G	4.282e^-4	0.896	INTERGENIC
3L	12661525	3L_12661525_SNP [dm3] 3L_12668425_SNP [dm6]	A	G	4.287e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8939003	3R_8939003_SNP [dm3] 3R_13113281_SNP [dm6]	C	T	4.294e^-4	0.896	INTRON timeout
3R	14017647	3R_14017647_SNP [dm3] 3R_18191925_SNP [dm6]	T	C	4.297e^-4	0.896	UTR_5_PRIME CG14313 DOWNSTREAM MED17 & 1 other	TF binding site mE1_TFBS_cad
2R	12548291	2R_12548291_SNP [dm3] 2R_16660786_SNP [dm6]	C	G	4.298e^-4	0.896	INTRON Picot
2L	9685519	2L_9685519_SNP [dm3] 2L_9685519_SNP [dm6]	T	C	4.298e^-4	0.896	INTRON Pka-C1
2R	17087283	2R_17087283_SNP [dm3] 2R_21199778_SNP [dm6]	T	G	4.300e^-4	0.896	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	21408288	3R_21408288_SNP [dm3] 3R_25582566_SNP [dm6]	C	T	4.302e^-4	0.896	SYNONYMOUS_CODING CG4582 INTRON msi	TF binding site mE1_TFBS_cad
2R	13745371	2R_13745371_SNP [dm3] 2R_17857866_SNP [dm6]	G	A	4.303e^-4	0.896	INTRON olf186-F
2L	10935980	2L_10935980_SNP [dm3] 2L_10935980_SNP [dm6]	A	G	4.306e^-4	0.896	UPSTREAM CG14072 INTRON dpr2
3R	24976436	3R_24976436_SNP [dm3] 3R_29150714_SNP [dm6]	C	G	4.314e^-4	0.896	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3R	8897737	3R_8897737_SNP [dm3] 3R_13072015_SNP [dm6]	C	A	4.319e^-4	0.896	UPSTREAM sim INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11605719	2L_11605719_DEL [dm3] 2L_11605719_DEL [dm6]	ACACTTTTATAGAAATTATC...	A	4.326e^-4	0.896	INTRON kek2
2R	6558544	2R_6558544_SNP [dm3] 2R_10671039_SNP [dm6]	T	G	4.332e^-4	0.896	INTERGENIC
2R	6557735	2R_6557735_SNP [dm3] 2R_10670230_SNP [dm6]	G	C	4.337e^-4	0.896	INTERGENIC
X	5296049	X_5296049_DEL [dm3] X_5402016_DEL [dm6]	CCCAAGTTT	C	4.338e^-4	0.896	UTR_3_PRIME SK DOWNSTREAM SK INTRON SK
2R	14809887	2R_14809887_SNP [dm3] 2R_18922382_SNP [dm6]	A	G	4.339e^-4	0.896	INTRON sano	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	834152	2L_834152_SNP [dm3] 2L_834152_SNP [dm6]	C	A	4.342e^-4	0.896	UTR_3_PRIME drongo DOWNSTREAM dock & 1 other
2L	2523314	2L_2523314_SNP [dm3] 2L_2523314_SNP [dm6]	G	C	4.343e^-4	0.896	INTERGENIC
3L	22359266	3L_22359266_SNP [dm3] 3L_22366166_SNP [dm6]	T	C	4.348e^-4	0.896	INTRON Ten-m
3R	13890785	3R_13890785_SNP [dm3] 3R_18065063_SNP [dm6]	T	C	4.356e^-4	0.896	INTERGENIC
3L	12873798	3L_12873798_SNP [dm3] 3L_12880698_SNP [dm6]	G	C	4.369e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7871804	3L_7871804_SNP [dm3] 3L_7878704_SNP [dm6]	C	T	4.376e^-4	0.896	INTRON CG32365	TF binding site BDTNP1_TFBS_dl
3R	10359461	3R_10359461_SNP [dm3] 3R_14533739_SNP [dm6]	A	G	4.377e^-4	0.896	INTRON Pde6
2L	3214122	2L_3214122_SNP [dm3] 2L_3214122_SNP [dm6]	G	C	4.377e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	6584504	2R_6584504_SNP [dm3] 2R_10696999_SNP [dm6]	T	G	4.396e^-4	0.896	INTRON stan
X	3420875	X_3420875_INS [dm3] X_3526842_INS [dm6]	C	CTC	4.397e^-4	0.896	INTRON CG32791
2R	16479288	2R_16479288_SNP [dm3] 2R_20591783_SNP [dm6]	A	C	4.403e^-4	0.896	INTRON bl	TF binding site BDTNP1_TFBS_dl
2R	19130023	2R_19130023_SNP [dm3] 2R_23242500_SNP [dm6]	T	C	4.408e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10682452	3L_10682452_SNP [dm3] 3L_10689352_SNP [dm6]	T	A	4.409e^-4	0.896	UTR_3_PRIME simj DOWNSTREAM simj
3L	6114678	3L_6114678_SNP [dm3] 3L_6121578_SNP [dm6]	T	C	4.418e^-4	0.896	SYNONYMOUS_CODING Ets65A
3L	8768407	3L_8768407_SNP [dm3] 3L_8775307_SNP [dm6]	G	A	4.418e^-4	0.896	INTRON Fhos
3L	12671109	3L_12671109_SNP [dm3] 3L_12678009_SNP [dm6]	A	C	4.431e^-4	0.896	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15179473	3R_15179473_SNP [dm3] 3R_19353751_SNP [dm6]	T	A	4.441e^-4	0.896	UPSTREAM CG43203 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
3R	14361895	3R_14361895_SNP [dm3] 3R_18536173_SNP [dm6]	A	C	4.443e^-4	0.896	INTRON fru
2L	6215131	2L_6215131_SNP [dm3] 2L_6215131_SNP [dm6]	T	A	4.454e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9781885	X_9781885_SNP [dm3] X_9887852_SNP [dm6]	A	G	4.468e^-4	0.896	DOWNSTREAM CG15249 INTERGENIC
3R	25675335	3R_25675335_SNP [dm3] 3R_29849613_SNP [dm6]	T	C	4.478e^-4	0.896	INTRON Cad99C	TF binding site mE1_TFBS_cad
3R	14988749	3R_14988749_SNP [dm3] 3R_19163027_SNP [dm6]	T	G	4.478e^-4	0.896	UPSTREAM CG42358 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	11881115	2R_11881115_SNP [dm3] 2R_15993610_SNP [dm6]	C	A	4.483e^-4	0.896	UTR_3_PRIME CG8320 & 1 other DOWNSTREAM ATPCL
3R	11352772	3R_11352772_SNP [dm3] 3R_15527050_SNP [dm6]	T	C	4.493e^-4	0.896	INTERGENIC
2L	9950238	2L_9950238_SNP [dm3] 2L_9950238_SNP [dm6]	G	C	4.496e^-4	0.896	DOWNSTREAM mir-87 INTERGENIC
X	5566671	X_5566671_SNP [dm3] X_5672638_SNP [dm6]	C	G	4.503e^-4	0.896	UPSTREAM RpL35 & 1 other INTRON RpL35	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	521444	2L_521444_SNP [dm3] 2L_521444_SNP [dm6]	T	C	4.508e^-4	0.896	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19673421	2R_19673421_DEL [dm3] 2R_23785898_DEL [dm6]	TAGA	AT	4.517e^-4	0.896	INTRON CG9850
2L	3214147	2L_3214147_DEL [dm3] 2L_3214147_DEL [dm6]	CA	C	4.535e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1879534	3L_1879534_SNP [dm3] 3L_1879534_SNP [dm6]	A	T	4.535e^-4	0.896	INTRON CG13937
X	6451166	X_6451166_SNP [dm3] X_6557133_SNP [dm6]	C	T	4.536e^-4	0.896	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	10517737	2R_10517737_SNP [dm3] 2R_14630232_SNP [dm6]	G	A	4.538e^-4	0.896	SYNONYMOUS_CODING CG10131	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8971552	2R_8971552_SNP [dm3] 2R_13084047_SNP [dm6]	C	G	4.541e^-4	0.896	INTERGENIC
3R	11352484	3R_11352484_SNP [dm3] 3R_15526762_SNP [dm6]	G	A	4.547e^-4	0.896	INTERGENIC
3R	16759911	3R_16759911_SNP [dm3] 3R_20934189_SNP [dm6]	T	A	4.554e^-4	0.896	INTRON CG31191
2L	8567721	2L_8567721_SNP [dm3] 2L_8567721_SNP [dm6]	A	G	4.562e^-4	0.896	INTRON Sema-1a
3R	24209906	3R_24209906_SNP [dm3] 3R_28384184_SNP [dm6]	C	T	4.567e^-4	0.896	INTERGENIC
2L	1495459	2L_1495459_DEL [dm3] 2L_1495459_DEL [dm6]	TGAGCGG	T	4.571e^-4	0.896	UTR_5_PRIME CG31926 UPSTREAM CG31926 DOWNSTREAM CG33128
X	3970429	X_3970429_SNP [dm3] X_4076396_SNP [dm6]	A	G	4.585e^-4	0.896	UTR_5_PRIME CG43689
3R	11903924	3R_11903924_DEL [dm3] 3R_16078202_DEL [dm6]	CTCTGAC	C	4.586e^-4	0.896	DOWNSTREAM CG32855 INTRON Mhcl
2R	5095782	2R_5095782_SNP [dm3] 2R_9208277_SNP [dm6]	A	G	4.616e^-4	0.896	SYNONYMOUS_CODING VhaAC45	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	6089567	X_6089567_SNP [dm3] X_6195534_SNP [dm6]	G	A	4.616e^-4	0.896	SYNONYMOUS_CODING CG32750
3L	6046449	3L_6046449_SNP [dm3] 3L_6053349_SNP [dm6]	A	C	4.616e^-4	0.896	DOWNSTREAM Jon65Ai & 1 other INTERGENIC	transposable element FlyBase
2L	1494787	2L_1494787_SNP [dm3] 2L_1494787_SNP [dm6]	A	T	4.624e^-4	0.896	SYNONYMOUS_CODING CG33128 UPSTREAM CG31926 DOWNSTREAM CG31928	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11841886	X_11841886_SNP [dm3] X_11947853_SNP [dm6]	T	A	4.627e^-4	0.896	INTRON cac
3L	13326366	3L_13326366_DEL [dm3] 3L_13333266_DEL [dm6]	CAA	T	4.629e^-4	0.896	INTERGENIC
2L	6575241	2L_6575241_SNP [dm3] 2L_6575241_SNP [dm6]	C	T	4.634e^-4	0.896	NON_SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
3L	10438590	3L_10438590_SNP [dm3] 3L_10445490_SNP [dm6]	A	G	4.641e^-4	0.896	INTERGENIC
X	4777201	X_4777201_SNP [dm3] X_4883168_SNP [dm6]	G	A	4.641e^-4	0.896	INTRON CG42594
3L	19454994	3L_19454994_SNP [dm3] 3L_19461894_SNP [dm6]	A	C	4.649e^-4	0.896	INTERGENIC
2R	11772322	2R_11772322_SNP [dm3] 2R_15884817_SNP [dm6]	T	C	4.665e^-4	0.896	INTRON sli
3R	15750729	3R_15750729_SNP [dm3] 3R_19925007_SNP [dm6]	G	T	4.667e^-4	0.896	INTRON CG4462
3L	5085115	3L_5085115_SNP [dm3] 3L_5085115_SNP [dm6]	A	C	4.668e^-4	0.896	INTERGENIC
3R	9197371	3R_9197371_SNP [dm3] 3R_13371649_SNP [dm6]	A	G	4.673e^-4	0.896	UPSTREAM CG34309 INTRON Lip3
3R	16509560	3R_16509560_SNP [dm3] 3R_20683838_SNP [dm6]	C	T	4.675e^-4	0.896	INTERGENIC
3R	11352488	3R_11352488_SNP [dm3] 3R_15526766_SNP [dm6]	G	A	4.689e^-4	0.896	INTERGENIC
X	5299903	X_5299903_SNP [dm3] X_5405870_SNP [dm6]	G	T	4.694e^-4	0.896	DOWNSTREAM SK INTRON NAAT1
X	3465883	X_3465883_SNP [dm3] X_3571850_SNP [dm6]	G	A	4.696e^-4	0.896	SYNONYMOUS_CODING CG2875 UTR_3_PRIME ppk8 UPSTREAM CG32791	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	7128505	2L_7128505_SNP [dm3] 2L_7128505_SNP [dm6]	A	G	4.698e^-4	0.896	INTRON Pvf3
3R	18441783	3R_18441783_SNP [dm3] 3R_22616061_SNP [dm6]	T	C	4.700e^-4	0.896	UPSTREAM CG31161 INTRON EF-G2
3R	26480303	3R_26480303_SNP [dm3] 3R_30654581_SNP [dm6]	C	T	4.701e^-4	0.896	INTERGENIC
3L	12308717	3L_12308717_SNP [dm3] 3L_12315617_SNP [dm6]	T	A	4.703e^-4	0.896	INTERGENIC
X	5605084	X_5605084_INS [dm3] X_5711051_INS [dm6]	A	AA	4.706e^-4	0.896	INTRON CG33080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ftz_f1
3R	15849865	3R_15849865_SNP [dm3] 3R_20024143_SNP [dm6]	C	T	4.708e^-4	0.896	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad
3R	26560746	3R_26560746_SNP [dm3] 3R_30735024_SNP [dm6]	A	T	4.715e^-4	0.896	INTERGENIC
3R	16082880	3R_16082880_DEL [dm3] 3R_20257158_DEL [dm6]	GAATCGAC	G	4.718e^-4	0.896	INTRON cic	TF binding site BDTNP1_TFBS_dl
3L	2328965	3L_2328965_SNP [dm3] 3L_2328965_SNP [dm6]	T	A	4.730e^-4	0.896	INTRON MsR1
3L	8577684	3L_8577684_SNP [dm3] 3L_8584584_SNP [dm6]	T	G	4.737e^-4	0.896	UPSTREAM CG43078 INTRON CG43078
3R	16940963	3R_16940963_SNP [dm3] 3R_21115241_SNP [dm6]	C	T	4.743e^-4	0.896	INTRON Rab11
2R	12101840	2R_12101840_SNP [dm3] 2R_16214335_SNP [dm6]	C	T	4.750e^-4	0.896	INTRON mrj
2R	17619026	2R_17619026_SNP [dm3] 2R_21731521_SNP [dm6]	T	C	4.750e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19759883	X_19759883_INS [dm3] X_19865850_INS [dm6]	T	TT	4.754e^-4	0.896	UPSTREAM Hers & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10032024	2R_10032024_SNP [dm3] 2R_14144519_SNP [dm6]	A	G	4.760e^-4	0.896	DOWNSTREAM mir-989 INTERGENIC
2L	17595375	2L_17595375_SNP [dm3] 2L_17595375_SNP [dm6]	C	T	4.763e^-4	0.896	INTRON Sytalpha
2R	19646999	2R_19646999_SNP [dm3] 2R_23759476_SNP [dm6]	G	A	4.770e^-4	0.896	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25627851	3R_25627851_SNP [dm3] 3R_29802129_SNP [dm6]	C	A	4.775e^-4	0.896	SYNONYMOUS_CODING CG7834 DOWNSTREAM Ice	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	5275609	3L_5275609_SNP [dm3] 3L_5282509_SNP [dm6]	A	G	4.793e^-4	0.896	INTERGENIC
3L	19345053	3L_19345053_SNP [dm3] 3L_19351953_SNP [dm6]	G	A	4.794e^-4	0.896	INTRON CG32206
3R	13896950	3R_13896950_DEL [dm3] 3R_18071228_DEL [dm6]	CACCATCATTGG...	T	4.798e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
2L	791028	2L_791028_SNP [dm3] 2L_791028_SNP [dm6]	A	T	4.798e^-4	0.896	UPSTREAM Pkg21D INTERGENIC
2L	10007404	2L_10007404_SNP [dm3] 2L_10007404_SNP [dm6]	G	T	4.808e^-4	0.896	INTRON CG4747
3L	13079366	3L_13079366_SNP [dm3] 3L_13086266_SNP [dm6]	C	A	4.819e^-4	0.896	DOWNSTREAM CG17300 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	21732735	3R_21732735_SNP [dm3] 3R_25907013_SNP [dm6]	T	G	4.824e^-4	0.896	UPSTREAM CG42235 & 1 other INTERGENIC
2R	13745444	2R_13745444_SNP [dm3] 2R_17857939_SNP [dm6]	A	T	4.824e^-4	0.896	INTRON olf186-F
X	7882441	X_7882441_SNP [dm3] X_7988408_SNP [dm6]	A	G	4.841e^-4	0.896	INTERGENIC
3L	6441470	3L_6441470_SNP [dm3] 3L_6448370_SNP [dm6]	C	G	4.843e^-4	0.896	INTRON CG42747
3R	10359399	3R_10359399_SNP [dm3] 3R_14533677_SNP [dm6]	A	C	4.844e^-4	0.896	INTRON Pde6
3L	8905403	3L_8905403_INS [dm3] 3L_8912303_INS [dm6]	T	TTAAAGA	4.849e^-4	0.896	UPSTREAM Tsp66E & 1 other INTRON mfr	TF binding site BDTNP1_TFBS_dl
3R	13544921	3R_13544921_SNP [dm3] 3R_17719199_SNP [dm6]	A	C	4.851e^-4	0.896	UPSTREAM osa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1491924	3L_1491924_SNP [dm3] 3L_1491924_SNP [dm6]	A	G	4.857e^-4	0.896	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11241884	3L_11241884_SNP [dm3] 3L_11248784_SNP [dm6]	G	C	4.860e^-4	0.896	UPSTREAM CR44715 EXON CR44717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	5275663	3L_5275663_SNP [dm3] 3L_5282563_SNP [dm6]	T	A	4.862e^-4	0.896	INTERGENIC
3R	14935818	3R_14935818_SNP [dm3] 3R_19110096_SNP [dm6]	G	A	4.868e^-4	0.896	INTRON CG6040
X	13434726	X_13434726_SNP [dm3] X_13540693_SNP [dm6]	C	G	4.872e^-4	0.896	INTERGENIC
3L	14025843	3L_14025843_SNP [dm3] 3L_14032743_SNP [dm6]	G	T	4.879e^-4	0.896	NON_SYNONYMOUS_CODING CG6650	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13458098	3R_13458098_SNP [dm3] 3R_17632376_SNP [dm6]	A	G	4.880e^-4	0.896	DOWNSTREAM tRNA:CR31573 INTRON CG43175
X	8349637	X_8349637_SNP [dm3] X_8455604_SNP [dm6]	T	C	4.895e^-4	0.896	UPSTREAM org-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16877135	3L_16877135_SNP [dm3] 3L_16884035_SNP [dm6]	A	T	4.897e^-4	0.896	INTRON Lmpt
X	8651689	X_8651689_SNP [dm3] X_8757656_SNP [dm6]	T	C	4.901e^-4	0.896	UTR_3_PRIME Lim1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12448334	3L_12448334_SNP [dm3] 3L_12455234_SNP [dm6]	G	A	4.903e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	14546479	3R_14546479_SNP [dm3] 3R_18720757_SNP [dm6]	G	A	4.908e^-4	0.896	INTRON Cha
2R	15196066	2R_15196066_SNP [dm3] 2R_19308561_SNP [dm6]	T	A	4.910e^-4	0.896	INTRON EndoB
X	9601268	X_9601268_SNP [dm3] X_9707235_SNP [dm6]	T	A	4.914e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	9361824	2R_9361824_SNP [dm3] 2R_13474319_SNP [dm6]	C	T	4.925e^-4	0.896	INTRON arr
3R	2574879	3R_2574879_SNP [dm3] 3R_6749157_SNP [dm6]	T	C	4.938e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10359326	3R_10359326_SNP [dm3] 3R_14533604_SNP [dm6]	A	T	4.942e^-4	0.896	INTRON Pde6
X	5842364	X_5842364_SNP [dm3] X_5948331_SNP [dm6]	G	A	4.951e^-4	0.896	UTR_3_PRIME CG32756 DOWNSTREAM CG32756 INTRON CG6041
3L	11387459	3L_11387459_DEL [dm3] 3L_11394359_DEL [dm6]	AACCA	A	4.953e^-4	0.896	UPSTREAM CG11726 INTERGENIC
2L	12749119	2L_12749119_SNP [dm3] 2L_12749119_SNP [dm6]	T	A	4.956e^-4	0.896	INTERGENIC
3R	23628613	3R_23628613_SNP [dm3] 3R_27802891_SNP [dm6]	G	A	4.957e^-4	0.896	INTRON CG34353
3L	10427497	3L_10427497_SNP [dm3] 3L_10434397_SNP [dm6]	G	T	4.958e^-4	0.896	UPSTREAM Ir67c INTERGENIC
2R	19639747	2R_19639747_SNP [dm3] 2R_23752224_SNP [dm6]	A	T	4.959e^-4	0.896	SYNONYMOUS_CODING CG11300 UPSTREAM CG5532 DOWNSTREAM CG12491	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	2883978	3L_2883978_SNP [dm3] 3L_2883978_SNP [dm6]	A	G	4.968e^-4	0.896	UTR_3_PRIME spz5 DOWNSTREAM CR44531	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	19803352	3R_19803352_SNP [dm3] 3R_23977630_SNP [dm6]	C	A	4.969e^-4	0.896	NON_SYNONYMOUS_CODING CG31140 INTRON CG31140
3R	8929993	3R_8929993_SNP [dm3] 3R_13104271_SNP [dm6]	A	G	4.969e^-4	0.896	INTRON timeout
2R	18440683	2R_18440683_SNP [dm3] 2R_22553178_SNP [dm6]	T	C	4.984e^-4	0.896	INTRON px
3R	26547616	3R_26547616_SNP [dm3] 3R_30721894_SNP [dm6]	G	A	4.988e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16932444	3R_16932444_SNP [dm3] 3R_21106722_SNP [dm6]	G	A	4.991e^-4	0.896	SYNONYMOUS_CODING Sec15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6160918	2L_6160918_SNP [dm3] 2L_6160918_SNP [dm6]	G	A	4.993e^-4	0.896	SYNONYMOUS_CODING CG13989	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8928697	2R_8928697_SNP [dm3] 2R_13041192_SNP [dm6]	G	T	4.993e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad transposable element FlyBase
3R	14301827	3R_14301827_SNP [dm3] 3R_18476105_SNP [dm6]	A	C	4.997e^-4	0.896	INTRON fru
3L	4619314	3L_4619314_SNP [dm3] 3L_4619314_SNP [dm6]	T	A	4.998e^-4	0.896	INTRON Src64B
2L	17694669	2L_17694669_SNP [dm3] 2L_17694669_SNP [dm6]	G	A	5.016e^-4	0.896	INTRON CadN
X	5605088	X_5605088_SNP [dm3] X_5711055_SNP [dm6]	G	A	5.022e^-4	0.896	INTRON CG33080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ftz_f1
2L	13886713	2L_13886713_SNP [dm3] 2L_13886713_SNP [dm6]	G	T	5.023e^-4	0.896	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	20050802	3L_20050802_DEL [dm3] 3L_20057702_DEL [dm6]	GTTAACCAGG	G	5.034e^-4	0.896	DOWNSTREAM sNPF-R INTERGENIC
3L	15883476	3L_15883476_SNP [dm3] 3L_15890376_SNP [dm6]	C	T	5.035e^-4	0.896	INTRON pHCl
2L	7128375	2L_7128375_SNP [dm3] 2L_7128375_SNP [dm6]	T	C	5.035e^-4	0.896	INTRON Pvf3
X	573534	X_573534_SNP [dm3] X_679501_SNP [dm6]	A	G	5.036e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15289307	3R_15289307_SNP [dm3] 3R_19463585_SNP [dm6]	C	A	5.046e^-4	0.896	UTR_5_PRIME Dys UPSTREAM CG6255 INTRON Dys	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	25758820	3R_25758820_SNP [dm3] 3R_29933098_SNP [dm6]	C	T	5.047e^-4	0.896	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12877316	2R_12877316_SNP [dm3] 2R_16989811_SNP [dm6]	G	A	5.048e^-4	0.896	INTRON Cbp53E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14346984	2L_14346984_SNP [dm3] 2L_14346984_SNP [dm6]	G	T	5.049e^-4	0.896	UPSTREAM Send2 DOWNSTREAM mTTF INTERGENIC
2L	8750532	2L_8750532_SNP [dm3] 2L_8750532_SNP [dm6]	A	C	5.052e^-4	0.896	INTERGENIC
3R	26735097	3R_26735097_SNP [dm3] 3R_30909375_SNP [dm6]	T	C	5.061e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9190328	3R_9190328_SNP [dm3] 3R_13364606_SNP [dm6]	A	T	5.064e^-4	0.896	UPSTREAM Dic1 & 1 other INTRON poly	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	2146928	X_2146928_SNP [dm3] X_2252895_SNP [dm6]	G	A	5.066e^-4	0.896	UPSTREAM CG3191 INTRON CG3091	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16084532	2R_16084532_SNP [dm3] 2R_20197027_SNP [dm6]	A	C	5.076e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11896317	X_11896317_DEL [dm3] X_12002284_DEL [dm6]	GTTG	G	5.076e^-4	0.896	UTR_5_PRIME fw
2L	17933900	2L_17933900_SNP [dm3] 2L_17933900_SNP [dm6]	C	T	5.076e^-4	0.896	INTERGENIC
3R	22615801	3R_22615801_SNP [dm3] 3R_26790079_SNP [dm6]	G	A	5.086e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25554393	3R_25554393_SNP [dm3] 3R_29728671_SNP [dm6]	G	A	5.090e^-4	0.896	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25554402	3R_25554402_SNP [dm3] 3R_29728680_SNP [dm6]	C	T	5.090e^-4	0.896	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8898885	3R_8898885_SNP [dm3] 3R_13073163_SNP [dm6]	G	T	5.091e^-4	0.896	INTRON sim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6557650	2R_6557650_SNP [dm3] 2R_10670145_SNP [dm6]	G	A	5.092e^-4	0.896	INTERGENIC
3L	1880628	3L_1880628_SNP [dm3] 3L_1880628_SNP [dm6]	C	A	5.100e^-4	0.896	INTRON CG13937

By genomic position
Variant impact
Gene name

DA_sem phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results