DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.468e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.05339

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	7.5252	0.0232

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1764 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	12797315	X_12797315_SNP [dm3] X_12903282_SNP [dm6]	G	A	5.233e^-7	0.436	UPSTREAM CG4407 DOWNSTREAM CG4404 INTRON CG4407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14028033	2L_14028033_SNP [dm3] 2L_14028033_SNP [dm6]	T	C	6.196e^-7	0.436	SYNONYMOUS_CODING CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17394322	X_17394322_SNP [dm3] X_17500289_SNP [dm6]	G	T	8.508e^-7	0.436	INTRON CG43658
2R	10810114	2R_10810114_SNP [dm3] 2R_14922609_SNP [dm6]	A	C	9.866e^-7	0.436	INTRON CG10249
X	12797571	X_12797571_SNP [dm3] X_12903538_SNP [dm6]	T	C	2.830e^-6	0.896	UPSTREAM CG4407 DOWNSTREAM CG4404 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3327163	3L_3327163_SNP [dm3] 3L_3327163_SNP [dm6]	T	A	4.482e^-6	0.896	INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc
2L	9013758	2L_9013758_SNP [dm3] 2L_9013758_SNP [dm6]	G	A	6.545e^-6	0.896	SYNONYMOUS_CODING Rcd-1r UTR_3_PRIME CG13102 DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6099457	2R_6099457_SNP [dm3] 2R_10211952_SNP [dm6]	G	A	7.732e^-6	0.896	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9231129	3L_9231129_SNP [dm3] 3L_9238029_SNP [dm6]	G	A	7.881e^-6	0.896	INTERGENIC
2L	13580136	2L_13580136_SNP [dm3] 2L_13580136_SNP [dm6]	A	T	8.703e^-6	0.896	INTRON kuz
2L	13580152	2L_13580152_SNP [dm3] 2L_13580152_SNP [dm6]	C	T	8.703e^-6	0.896	INTRON kuz
X	9075056	X_9075056_SNP [dm3] X_9181023_SNP [dm6]	A	C	8.928e^-6	0.896	UTR_3_PRIME mei-P26
X	9075059	X_9075059_SNP [dm3] X_9181026_SNP [dm6]	C	G	8.928e^-6	0.896	UTR_3_PRIME mei-P26
2L	2610687	2L_2610687_SNP [dm3] 2L_2610687_SNP [dm6]	A	G	9.127e^-6	0.896	SYNONYMOUS_CODING CG15395	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14028073	2L_14028073_SNP [dm3] 2L_14028073_SNP [dm6]	G	A	9.622e^-6	0.896	NON_SYNONYMOUS_CODING CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5709539	X_5709539_SNP [dm3] X_5815506_SNP [dm6]	G	A	1.155e^-5	0.896	SYNONYMOUS_CODING CG15766	TF binding site mE1_TFBS_chinmo
2L	18426811	2L_18426811_SNP [dm3] 2L_18426811_SNP [dm6]	A	T	1.169e^-5	0.896	INTERGENIC
3L	8178596	3L_8178596_SNP [dm3] 3L_8185496_SNP [dm6]	C	A	1.301e^-5	0.896	INTRON ERR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	18865251	2R_18865251_SNP [dm3] 2R_22977728_SNP [dm6]	A	G	1.318e^-5	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13576397	2L_13576397_SNP [dm3] 2L_13576397_SNP [dm6]	C	G	1.332e^-5	0.896	INTRON kuz
2L	6711828	2L_6711828_SNP [dm3] 2L_6711828_SNP [dm6]	T	C	1.449e^-5	0.896	UTR_3_PRIME AkhR INTRON AkhR
2R	6157436	2R_6157436_DEL [dm3] 2R_10269931_DEL [dm6]	TG	T	1.458e^-5	0.896	DOWNSTREAM CG12910 INTRON CAP
2R	12186584	2R_12186584_SNP [dm3] 2R_16299079_SNP [dm6]	T	C	1.477e^-5	0.896	UPSTREAM CG43265 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11932543	2R_11932543_SNP [dm3] 2R_16045038_SNP [dm6]	A	C	1.490e^-5	0.896	INTRON SP2353
2L	13588091	2L_13588091_SNP [dm3] 2L_13588091_SNP [dm6]	C	G	1.508e^-5	0.896	INTRON kuz
2R	20192264	2R_20192264_SNP [dm3] 2R_24304741_SNP [dm6]	G	A	1.640e^-5	0.896	INTERGENIC	regulatory region REDfly_CRMs
2L	12566192	2L_12566192_SNP [dm3] 2L_12566192_SNP [dm6]	A	T	1.721e^-5	0.896	INTERGENIC
2L	12516561	2L_12516561_SNP [dm3] 2L_12516561_SNP [dm6]	G	T	1.767e^-5	0.896	SYNONYMOUS_CODING bun INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12476756	2R_12476756_SNP [dm3] 2R_16589251_SNP [dm6]	G	A	1.803e^-5	0.896	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12516588	2L_12516588_SNP [dm3] 2L_12516588_SNP [dm6]	A	G	1.814e^-5	0.896	SYNONYMOUS_CODING bun INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6865395	2L_6865395_SNP [dm3] 2L_6865395_SNP [dm6]	G	T	2.036e^-5	0.896	INTRON Nha1
2L	14014826	2L_14014826_SNP [dm3] 2L_14014826_SNP [dm6]	G	A	2.216e^-5	0.896	INTRON bgm
2L	15334900	2L_15334900_SNP [dm3] 2L_15334900_SNP [dm6]	G	A	2.364e^-5	0.896	SYNONYMOUS_CODING esg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	16268652	3L_16268652_SNP [dm3] 3L_16275552_SNP [dm6]	T	C	2.431e^-5	0.896	INTERGENIC
2L	18426797	2L_18426797_SNP [dm3] 2L_18426797_SNP [dm6]	T	G	2.696e^-5	0.896	INTERGENIC
3L	20266621	3L_20266621_SNP [dm3] 3L_20273521_SNP [dm6]	G	A	2.716e^-5	0.896	SYNONYMOUS_CODING CG17122 INTRON gogo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6295500	2R_6295500_SNP [dm3] 2R_10407995_SNP [dm6]	C	G	2.825e^-5	0.896	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
X	9446872	X_9446872_SNP [dm3] X_9552839_SNP [dm6]	T	A	2.859e^-5	0.896	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	285116	2L_285116_SNP [dm3] 2L_285116_SNP [dm6]	G	A	2.978e^-5	0.896	INTRON CG3625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8353731	3L_8353731_SNP [dm3] 3L_8360631_SNP [dm6]	A	T	3.014e^-5	0.896	UPSTREAM Idh INTRON Idh	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8909562	2R_8909562_SNP [dm3] 2R_13022057_SNP [dm6]	C	A	3.224e^-5	0.896	INTERGENIC
3L	18219124	3L_18219124_SNP [dm3] 3L_18226024_SNP [dm6]	T	A	3.326e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	26937266	3R_26937266_SNP [dm3] 3R_31111544_SNP [dm6]	A	G	3.395e^-5	0.896	INTERGENIC
2L	15808317	2L_15808317_SNP [dm3] 2L_15808317_SNP [dm6]	A	C	3.500e^-5	0.896	EXON CR44602
2R	11932898	2R_11932898_SNP [dm3] 2R_16045393_SNP [dm6]	G	T	3.502e^-5	0.896	SPLICE_SITE_REGION SP2353 INTRON SP2353
3R	26999428	3R_26999428_SNP [dm3] 3R_31173706_SNP [dm6]	T	C	3.605e^-5	0.896	INTRON Gycbeta100B
2L	13292701	2L_13292701_SNP [dm3] 2L_13292701_SNP [dm6]	C	A	3.652e^-5	0.896	UPSTREAM CG16824 INTRON CG31729
3R	22141863	3R_22141863_SNP [dm3] 3R_26316141_SNP [dm6]	A	T	4.142e^-5	0.896	INTERGENIC
2R	18597339	2R_18597339_SNP [dm3] 2R_22709834_SNP [dm6]	G	A	4.284e^-5	0.896	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
2R	6157376	2R_6157376_SNP [dm3] 2R_10269871_SNP [dm6]	T	G	4.287e^-5	0.896	DOWNSTREAM CG12910 INTRON CAP
3L	9962866	3L_9962866_SNP [dm3] 3L_9969766_SNP [dm6]	T	G	4.339e^-5	0.896	INTRON Nc
2R	2441944	2R_2441944_SNP [dm3] 2R_6554439_SNP [dm6]	T	C	4.363e^-5	0.896	INTRON jing
2L	9142737	2L_9142737_SNP [dm3] 2L_9142737_SNP [dm6]	T	A	4.582e^-5	0.896	INTRON CG32982
X	19760780	X_19760780_SNP [dm3] X_19866747_SNP [dm6]	G	A	4.598e^-5	0.896	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	6335551	3R_6335551_SNP [dm3] 3R_10509829_SNP [dm6]	T	A	4.674e^-5	0.896	UTR_3_PRIME hth DOWNSTREAM hth	TF binding site mE1_TFBS_zfh1
2L	3197535	2L_3197535_SNP [dm3] 2L_3197535_SNP [dm6]	T	A	4.795e^-5	0.896	INTRON CG34393
2R	11700217	2R_11700217_SNP [dm3] 2R_15812712_SNP [dm6]	G	A	4.834e^-5	0.896	INTRON tun & 1 other
3R	5370332	3R_5370332_SNP [dm3] 3R_9544610_SNP [dm6]	A	T	4.865e^-5	0.896	INTRON mura	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13580175	2L_13580175_SNP [dm3] 2L_13580175_SNP [dm6]	A	T	4.895e^-5	0.896	INTRON kuz
2L	13580204	2L_13580204_SNP [dm3] 2L_13580204_SNP [dm6]	C	T	4.895e^-5	0.896	INTRON kuz
2L	2610639	2L_2610639_SNP [dm3] 2L_2610639_SNP [dm6]	C	T	5.067e^-5	0.896	SYNONYMOUS_CODING CG15395	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	16661436	X_16661436_DEL [dm3] X_16767403_DEL [dm6]	TAA	T	5.107e^-5	0.896	INTRON if
3L	9609799	3L_9609799_SNP [dm3] 3L_9616699_SNP [dm6]	G	A	5.350e^-5	0.896	INTRON LanB2	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	15890744	X_15890744_SNP [dm3] X_15996711_SNP [dm6]	A	C	5.372e^-5	0.896	UPSTREAM CG8939 DOWNSTREAM exd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8781463	2L_8781463_SNP [dm3] 2L_8781463_SNP [dm6]	A	G	5.391e^-5	0.896	UPSTREAM CG9468 DOWNSTREAM CG42710 INTERGENIC
2L	2025805	2L_2025805_SNP [dm3] 2L_2025805_SNP [dm6]	T	A	5.406e^-5	0.896	INTRON CG4238
2L	9014159	2L_9014159_SNP [dm3] 2L_9014159_SNP [dm6]	C	T	5.463e^-5	0.896	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11987674	2R_11987674_SNP [dm3] 2R_16100169_SNP [dm6]	A	G	5.553e^-5	0.896	SYNONYMOUS_CODING CG8414 DOWNSTREAM mRpL34	TF binding site mE1_TFBS_sens
3L	5257468	3L_5257468_SNP [dm3] 3L_5264368_SNP [dm6]	G	A	5.615e^-5	0.896	INTRON shep
2L	10806411	2L_10806411_SNP [dm3] 2L_10806411_SNP [dm6]	A	G	5.617e^-5	0.896	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_chinmo
3R	26975285	3R_26975285_SNP [dm3] 3R_31149563_SNP [dm6]	G	A	5.683e^-5	0.896	INTRON Gycbeta100B
3L	2340579	3L_2340579_SNP [dm3] 3L_2340579_SNP [dm6]	T	A	5.756e^-5	0.896	INTRON MsR1	TF binding site mE1_TFBS_inv
2L	14003421	2L_14003421_SNP [dm3] 2L_14003421_SNP [dm6]	C	T	5.779e^-5	0.896	INTERGENIC
2L	1099747	2L_1099747_SNP [dm3] 2L_1099747_SNP [dm6]	C	T	5.836e^-5	0.896	INTRON CG4629
2R	11932596	2R_11932596_SNP [dm3] 2R_16045091_SNP [dm6]	C	T	5.882e^-5	0.896	SYNONYMOUS_CODING SP2353
2L	2516947	2L_2516947_SNP [dm3] 2L_2516947_SNP [dm6]	G	A	5.920e^-5	0.896	DOWNSTREAM CG3528 INTERGENIC
2R	17122869	2R_17122869_SNP [dm3] 2R_21235364_SNP [dm6]	A	T	5.920e^-5	0.896	INTRON ASPP
2R	20183974	2R_20183974_SNP [dm3] 2R_24296451_SNP [dm6]	G	T	6.241e^-5	0.896	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16550820	2L_16550820_SNP [dm3] 2L_16550820_SNP [dm6]	G	A	6.278e^-5	0.896	UPSTREAM CG5968 INTRON CG42389
2L	4048846	2L_4048846_SNP [dm3] 2L_4048846_SNP [dm6]	A	G	6.450e^-5	0.896	INTRON ed
2R	18600845	2R_18600845_SNP [dm3] 2R_22713340_SNP [dm6]	C	A	6.465e^-5	0.896	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
3L	3486298	3L_3486298_SNP [dm3] 3L_3486298_SNP [dm6]	C	T	6.492e^-5	0.896	INTRON CG42324
3R	26162525	3R_26162525_SNP [dm3] 3R_30336803_SNP [dm6]	G	T	6.541e^-5	0.896	INTRON hdc
2L	9009942	2L_9009942_SNP [dm3] 2L_9009942_SNP [dm6]	C	T	6.544e^-5	0.896	UPSTREAM CG9568 INTERGENIC
2R	10037119	2R_10037119_SNP [dm3] 2R_14149614_SNP [dm6]	T	C	6.637e^-5	0.896	NON_SYNONYMOUS_CODING Rcd1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26975294	3R_26975294_SNP [dm3] 3R_31149572_SNP [dm6]	C	T	6.675e^-5	0.896	INTRON Gycbeta100B
3R	24372507	3R_24372507_SNP [dm3] 3R_28546785_SNP [dm6]	A	T	6.681e^-5	0.896	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	1948788	2L_1948788_DEL [dm3] 2L_1948788_DEL [dm6]	CTA	T	6.766e^-5	0.896	INTERGENIC	regulatory region REDfly_CRMs
X	12797558	X_12797558_SNP [dm3] X_12903525_SNP [dm6]	T	C	6.828e^-5	0.896	UPSTREAM CG4407 DOWNSTREAM CG4404 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6256196	3L_6256196_SNP [dm3] 3L_6263096_SNP [dm6]	C	T	6.859e^-5	0.896	UPSTREAM ImpL3 EXON CR44522	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2387817	3L_2387817_SNP [dm3] 3L_2387817_SNP [dm6]	G	T	6.916e^-5	0.896	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	8884674	X_8884674_SNP [dm3] X_8990641_SNP [dm6]	T	A	6.946e^-5	0.896	INTRON rdgA & 1 other
X	8884677	X_8884677_SNP [dm3] X_8990644_SNP [dm6]	A	T	6.946e^-5	0.896	INTRON rdgA & 1 other
2L	835915	2L_835915_SNP [dm3] 2L_835915_SNP [dm6]	G	A	7.045e^-5	0.896	SYNONYMOUS_CODING drongo INTRON drongo
3L	10121776	3L_10121776_SNP [dm3] 3L_10128676_SNP [dm6]	A	G	7.302e^-5	0.896	INTRON dpr6
2L	6001940	2L_6001940_SNP [dm3] 2L_6001940_SNP [dm6]	T	A	7.393e^-5	0.896	UTR_3_PRIME Tsp26A
2L	12197965	2L_12197965_SNP [dm3] 2L_12197965_SNP [dm6]	T	G	7.541e^-5	0.896	INTRON aret
2R	6099241	2R_6099241_SNP [dm3] 2R_10211736_SNP [dm6]	C	A	7.812e^-5	0.896	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	20187169	2R_20187169_SNP [dm3] 2R_24299646_SNP [dm6]	G	A	7.818e^-5	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1030735	2L_1030735_SNP [dm3] 2L_1030735_SNP [dm6]	G	C	7.841e^-5	0.896	INTRON IA-2
X	9447098	X_9447098_SNP [dm3] X_9553065_SNP [dm6]	G	T	8.038e^-5	0.896	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	7338336	2R_7338336_SNP [dm3] 2R_11450831_SNP [dm6]	T	C	8.094e^-5	0.896	UTR_3_PRIME qvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	17100559	2R_17100559_SNP [dm3] 2R_21213054_SNP [dm6]	A	G	8.215e^-5	0.896	SYNONYMOUS_CODING CG4302 DOWNSTREAM CG44245
2R	10018633	2R_10018633_SNP [dm3] 2R_14131128_SNP [dm6]	A	G	8.222e^-5	0.896	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10130870	3L_10130870_SNP [dm3] 3L_10137770_SNP [dm6]	C	A	8.235e^-5	0.896	INTRON dpr6
3L	10992323	3L_10992323_SNP [dm3] 3L_10999223_SNP [dm6]	C	T	8.277e^-5	0.896	INTRON klu	TF binding site mE1_TFBS_cad
3L	1180582	3L_1180582_SNP [dm3] 3L_1180582_SNP [dm6]	G	A	8.336e^-5	0.896	INTERGENIC
2L	1342009	2L_1342009_SNP [dm3] 2L_1342009_SNP [dm6]	G	A	8.343e^-5	0.896	INTRON CG33923
2L	11972042	2L_11972042_SNP [dm3] 2L_11972042_SNP [dm6]	C	T	8.390e^-5	0.896	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	4956481	3R_4956481_SNP [dm3] 3R_9130759_SNP [dm6]	G	A	8.428e^-5	0.896	INTRON pum
2L	1738297	2L_1738297_SNP [dm3] 2L_1738297_SNP [dm6]	A	G	8.429e^-5	0.896	INTRON CG17646	TF binding site mE1_TFBS_Trl
2L	6578843	2L_6578843_SNP [dm3] 2L_6578843_SNP [dm6]	T	A	8.486e^-5	0.896	INTRON CG11319
2L	12198803	2L_12198803_SNP [dm3] 2L_12198803_SNP [dm6]	G	A	8.518e^-5	0.896	INTRON aret
3L	13816520	3L_13816520_SNP [dm3] 3L_13823420_SNP [dm6]	A	G	8.531e^-5	0.896	INTERGENIC
2R	19617748	2R_19617748_SNP [dm3] 2R_23730225_SNP [dm6]	G	C	8.571e^-5	0.896	INTRON Sesn
3R	26937137	3R_26937137_DEL [dm3] 3R_31111415_DEL [dm6]	AGTTGCAGCATA...	A	8.709e^-5	0.896	INTERGENIC
3R	26937166	3R_26937166_SNP [dm3] 3R_31111444_SNP [dm6]	C	T	8.709e^-5	0.896	INTERGENIC
3R	26937186	3R_26937186_SNP [dm3] 3R_31111464_SNP [dm6]	A	T	8.709e^-5	0.896	INTERGENIC
3R	26937197	3R_26937197_SNP [dm3] 3R_31111475_SNP [dm6]	C	T	8.709e^-5	0.896	INTERGENIC
3R	26937206	3R_26937206_SNP [dm3] 3R_31111484_SNP [dm6]	T	A	8.709e^-5	0.896	INTERGENIC
2R	6735376	2R_6735376_SNP [dm3] 2R_10847871_SNP [dm6]	A	G	8.713e^-5	0.896	INTRON CG30015
3L	9404564	3L_9404564_SNP [dm3] 3L_9411464_SNP [dm6]	G	T	8.724e^-5	0.896	UPSTREAM CG4022 INTRON CG3689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14671054	2R_14671054_SNP [dm3] 2R_18783549_SNP [dm6]	A	T	8.747e^-5	0.896	UTR_5_PRIME CG15080
2L	15000052	2L_15000052_SNP [dm3] 2L_15000052_SNP [dm6]	T	C	8.843e^-5	0.896	INTERGENIC
2L	13580295	2L_13580295_SNP [dm3] 2L_13580295_SNP [dm6]	C	A	8.862e^-5	0.896	INTRON kuz
3L	608603	3L_608603_SNP [dm3] 3L_608603_SNP [dm6]	A	G	8.932e^-5	0.896	DOWNSTREAM CR44513 INTERGENIC
X	8884648	X_8884648_SNP [dm3] X_8990615_SNP [dm6]	T	C	8.932e^-5	0.896	INTRON rdgA & 1 other
X	8884708	X_8884708_SNP [dm3] X_8990675_SNP [dm6]	G	T	8.932e^-5	0.896	INTRON rdgA & 1 other
2R	14893468	2R_14893468_SNP [dm3] 2R_19005963_SNP [dm6]	G	T	8.972e^-5	0.896	SYNONYMOUS_CODING tn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13428318	2L_13428318_SNP [dm3] 2L_13428318_SNP [dm6]	A	C	9.021e^-5	0.896	INTRON CG42784
2L	13428337	2L_13428337_SNP [dm3] 2L_13428337_SNP [dm6]	T	A	9.021e^-5	0.896	INTRON CG42784
2L	2862326	2L_2862326_SNP [dm3] 2L_2862326_SNP [dm6]	C	T	9.095e^-5	0.896	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26975435	3R_26975435_SNP [dm3] 3R_31149713_SNP [dm6]	G	T	9.122e^-5	0.896	INTRON Gycbeta100B
2L	1868917	2L_1868917_SNP [dm3] 2L_1868917_SNP [dm6]	C	T	9.126e^-5	0.896	UPSTREAM CG7295 INTRON CG31663
3R	4958861	3R_4958861_SNP [dm3] 3R_9133139_SNP [dm6]	T	A	9.130e^-5	0.896	INTRON pum
2L	14028096	2L_14028096_SNP [dm3] 2L_14028096_SNP [dm6]	G	C	9.227e^-5	0.896	NON_SYNONYMOUS_CODING CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19162029	2R_19162029_SNP [dm3] 2R_23274506_SNP [dm6]	G	A	9.362e^-5	0.896	UTR_5_PRIME ord UPSTREAM ord
3L	8792287	3L_8792287_SNP [dm3] 3L_8799187_SNP [dm6]	A	G	9.403e^-5	0.896	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
3L	12282235	3L_12282235_SNP [dm3] 3L_12289135_SNP [dm6]	G	C	9.518e^-5	0.896	DOWNSTREAM CR45658 INTERGENIC
2R	13888539	2R_13888539_SNP [dm3] 2R_18001034_SNP [dm6]	C	A	9.880e^-5	0.896	INTRON dpr13
2L	15311169	2L_15311169_SNP [dm3] 2L_15311169_SNP [dm6]	A	T	1.005e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11499071	3R_11499071_SNP [dm3] 3R_15673349_SNP [dm6]	G	C	1.008e^-4	0.896	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26999311	3R_26999311_SNP [dm3] 3R_31173589_SNP [dm6]	G	A	1.010e^-4	0.896	INTRON Gycbeta100B
2L	4462913	2L_4462913_SNP [dm3] 2L_4462913_SNP [dm6]	A	G	1.015e^-4	0.896	SYNONYMOUS_CODING CG15443 UPSTREAM CG15436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12173065	2L_12173065_SNP [dm3] 2L_12173065_SNP [dm6]	T	A	1.020e^-4	0.896	UTR_5_PRIME crok UPSTREAM CG6583	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10855928	2R_10855928_SNP [dm3] 2R_14968423_SNP [dm6]	T	C	1.020e^-4	0.896	INTRON ckn
2R	6099373	2R_6099373_SNP [dm3] 2R_10211868_SNP [dm6]	C	G	1.028e^-4	0.896	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10872601	2L_10872601_SNP [dm3] 2L_10872601_SNP [dm6]	G	A	1.029e^-4	0.896	DOWNSTREAM CR45454 INTERGENIC
X	17000798	X_17000798_INS [dm3] X_17106765_INS [dm6]	T	TATTATTATTAAAAA...	1.036e^-4	0.896	UPSTREAM Arpc3B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	12726837	3R_12726837_SNP [dm3] 3R_16901115_SNP [dm6]	A	G	1.037e^-4	0.896	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	16661435	X_16661435_SNP [dm3] X_16767402_SNP [dm6]	T	C	1.042e^-4	0.896	INTRON if
2R	8948631	2R_8948631_SNP [dm3] 2R_13061126_SNP [dm6]	A	T	1.048e^-4	0.896	INTRON Drl-2
2R	13020226	2R_13020226_DEL [dm3] 2R_17132721_DEL [dm6]	TTCGTTGTATT...	T	1.056e^-4	0.896	UPSTREAM Acp54A1 INTERGENIC
3L	8802442	3L_8802442_SNP [dm3] 3L_8809342_SNP [dm6]	G	C	1.067e^-4	0.896	DOWNSTREAM CG32024 & 1 other INTERGENIC
X	8884620	X_8884620_SNP [dm3] X_8990587_SNP [dm6]	C	A	1.100e^-4	0.896	INTRON rdgA & 1 other
2R	8909570	2R_8909570_SNP [dm3] 2R_13022065_SNP [dm6]	T	C	1.100e^-4	0.896	INTERGENIC
3L	7854076	3L_7854076_SNP [dm3] 3L_7860976_SNP [dm6]	G	C	1.100e^-4	0.896	INTRON Pdp1
3L	7951064	3L_7951064_DEL [dm3] 3L_7957964_DEL [dm6]	CA	G	1.110e^-4	0.896	INTERGENIC
3L	10121780	3L_10121780_SNP [dm3] 3L_10128680_SNP [dm6]	C	A	1.110e^-4	0.896	INTRON dpr6
2L	2740357	2L_2740357_INS [dm3] 2L_2740357_INS [dm6]	A	AA	1.112e^-4	0.896	UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	1638438	2R_1638438_SNP [dm3] 2R_5750933_SNP [dm6]	T	A	1.122e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18889419	2R_18889419_SNP [dm3] 2R_23001896_SNP [dm6]	G	A	1.125e^-4	0.896	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18889441	2R_18889441_SNP [dm3] 2R_23001918_SNP [dm6]	T	C	1.125e^-4	0.896	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18889448	2R_18889448_SNP [dm3] 2R_23001925_SNP [dm6]	C	G	1.125e^-4	0.896	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	12796703	X_12796703_SNP [dm3] X_12902670_SNP [dm6]	C	T	1.145e^-4	0.896	SYNONYMOUS_CODING CG4407	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3577993	2R_3577993_SNP [dm3] 2R_7690488_SNP [dm6]	T	C	1.164e^-4	0.896	INTRON CG1399
3L	2639912	3L_2639912_SNP [dm3] 3L_2639912_SNP [dm6]	A	T	1.167e^-4	0.896	INTRON MEP-1 & 1 other	TF binding site mE1_TFBS_chinmo
3L	9231064	3L_9231064_SNP [dm3] 3L_9237964_SNP [dm6]	A	T	1.167e^-4	0.896	INTERGENIC
X	6101790	X_6101790_SNP [dm3] X_6207757_SNP [dm6]	A	G	1.168e^-4	0.896	INTERGENIC
X	22224325	X_22224325_SNP [dm3] X_22822489_SNP [dm6]	A	G	1.171e^-4	0.896	INTERGENIC	transposable element FlyBase
X	8884665	X_8884665_SNP [dm3] X_8990632_SNP [dm6]	C	A	1.190e^-4	0.896	INTRON rdgA & 1 other
3L	2128302	3L_2128302_SNP [dm3] 3L_2128302_SNP [dm6]	G	A	1.192e^-4	0.896	SYNONYMOUS_CODING zormin INTRON zormin
3R	24714359	3R_24714359_SNP [dm3] 3R_28888637_SNP [dm6]	T	C	1.195e^-4	0.896	UPSTREAM CG33203 & 1 other INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10582198	3R_10582198_SNP [dm3] 3R_14756476_SNP [dm6]	C	T	1.214e^-4	0.896	INTRON jvl
2L	18346472	2L_18346472_SNP [dm3] 2L_18346472_SNP [dm6]	C	A	1.223e^-4	0.896	INTRON Fas3
2L	2518785	2L_2518785_SNP [dm3] 2L_2518785_SNP [dm6]	C	A	1.226e^-4	0.896	UPSTREAM CG3528 INTERGENIC
2R	6099307	2R_6099307_SNP [dm3] 2R_10211802_SNP [dm6]	G	A	1.238e^-4	0.896	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9962868	3L_9962868_SNP [dm3] 3L_9969768_SNP [dm6]	C	A	1.240e^-4	0.896	INTRON Nc
3R	22951737	3R_22951737_SNP [dm3] 3R_27126015_SNP [dm6]	A	G	1.241e^-4	0.896	SYNONYMOUS_CODING CG6051	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19003235	2R_19003235_SNP [dm3] 2R_23115712_SNP [dm6]	T	A	1.242e^-4	0.896	INTERGENIC
X	12796652	X_12796652_SNP [dm3] X_12902619_SNP [dm6]	A	G	1.245e^-4	0.896	SYNONYMOUS_CODING CG4407	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15044696	2L_15044696_SNP [dm3] 2L_15044696_SNP [dm6]	T	A	1.272e^-4	0.896	DOWNSTREAM ck INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	15044703	2L_15044703_SNP [dm3] 2L_15044703_SNP [dm6]	C	T	1.272e^-4	0.896	DOWNSTREAM ck INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	6012650	2L_6012650_SNP [dm3] 2L_6012650_SNP [dm6]	G	A	1.275e^-4	0.896	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
X	19054243	X_19054243_INS [dm3] X_19160210_INS [dm6]	T	TGAAATAATTTATTACATCT...	1.281e^-4	0.896	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2621328	2L_2621328_SNP [dm3] 2L_2621328_SNP [dm6]	T	C	1.282e^-4	0.896	DOWNSTREAM CG43403 INTERGENIC
X	17000797	X_17000797_SNP [dm3] X_17106764_SNP [dm6]	G	T	1.313e^-4	0.896	UPSTREAM Arpc3B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	13924075	2L_13924075_SNP [dm3] 2L_13924075_SNP [dm6]	G	A	1.323e^-4	0.896	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4220476	2L_4220476_SNP [dm3] 2L_4220476_SNP [dm6]	T	A	1.324e^-4	0.896	INTRON ft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
X	4329493	X_4329493_SNP [dm3] X_4435460_SNP [dm6]	G	T	1.335e^-4	0.896	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
X	12796569	X_12796569_SNP [dm3] X_12902536_SNP [dm6]	C	A	1.341e^-4	0.896	NON_SYNONYMOUS_CODING CG4407	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7528896	2L_7528896_SNP [dm3] 2L_7528896_SNP [dm6]	T	C	1.344e^-4	0.896	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4048805	2L_4048805_SNP [dm3] 2L_4048805_SNP [dm6]	C	T	1.347e^-4	0.896	INTRON ed
3R	24714879	3R_24714879_SNP [dm3] 3R_28889157_SNP [dm6]	C	T	1.351e^-4	0.896	UTR_5_PRIME Doa INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24715020	3R_24715020_SNP [dm3] 3R_28889298_SNP [dm6]	G	A	1.351e^-4	0.896	UTR_5_PRIME Doa INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24715933	3R_24715933_SNP [dm3] 3R_28890211_SNP [dm6]	C	T	1.351e^-4	0.896	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24715957	3R_24715957_SNP [dm3] 3R_28890235_SNP [dm6]	C	T	1.351e^-4	0.896	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24716217	3R_24716217_SNP [dm3] 3R_28890495_SNP [dm6]	G	A	1.351e^-4	0.896	INTRON Doa
3R	24716389	3R_24716389_SNP [dm3] 3R_28890667_SNP [dm6]	C	T	1.351e^-4	0.896	INTRON Doa
3R	24716493	3R_24716493_SNP [dm3] 3R_28890771_SNP [dm6]	C	T	1.351e^-4	0.896	INTRON Doa
3R	24716576	3R_24716576_SNP [dm3] 3R_28890854_SNP [dm6]	C	A	1.351e^-4	0.896	INTRON Doa
3R	25317605	3R_25317605_SNP [dm3] 3R_29491883_SNP [dm6]	T	C	1.357e^-4	0.896	SYNONYMOUS_CODING CG2310 UPSTREAM Spase12 DOWNSTREAM CG2006	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7332994	2L_7332994_SNP [dm3] 2L_7332994_SNP [dm6]	T	C	1.379e^-4	0.896	UPSTREAM Wnt6 INTERGENIC
X	22224309	X_22224309_SNP [dm3] X_22822473_SNP [dm6]	C	G	1.384e^-4	0.896	INTERGENIC	transposable element FlyBase
3L	9231165	3L_9231165_SNP [dm3] 3L_9238065_SNP [dm6]	G	A	1.399e^-4	0.896	INTERGENIC
3R	20203829	3R_20203829_SNP [dm3] 3R_24378107_SNP [dm6]	T	C	1.404e^-4	0.896	DOWNSTREAM CG33342 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4859066	X_4859066_SNP [dm3] X_4965033_SNP [dm6]	C	G	1.405e^-4	0.896	INTRON CR44833
X	4329437	X_4329437_SNP [dm3] X_4435404_SNP [dm6]	G	A	1.435e^-4	0.896	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	855753	3L_855753_SNP [dm3] 3L_855753_SNP [dm6]	A	T	1.463e^-4	0.896	INTRON dpr20
2R	12977609	2R_12977609_SNP [dm3] 2R_17090104_SNP [dm6]	A	C	1.467e^-4	0.896	SYNONYMOUS_CODING Sply
X	15561786	X_15561786_SNP [dm3] X_15667753_SNP [dm6]	C	A	1.486e^-4	0.896	DOWNSTREAM CG15646 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	10276147	2R_10276147_SNP [dm3] 2R_14388642_SNP [dm6]	G	C	1.486e^-4	0.896	INTERGENIC
X	10722814	X_10722814_SNP [dm3] X_10828781_SNP [dm6]	C	T	1.514e^-4	0.896	INTERGENIC
X	8884679	X_8884679_SNP [dm3] X_8990646_SNP [dm6]	G	A	1.518e^-4	0.896	INTRON rdgA & 1 other
2L	15044887	2L_15044887_INS [dm3] 2L_15044887_INS [dm6]	T	TAT	1.524e^-4	0.896	DOWNSTREAM ck INTERGENIC	regulatory region REDfly_CRMs
3L	16307843	3L_16307843_SNP [dm3] 3L_16314743_SNP [dm6]	C	T	1.547e^-4	0.896	SYNONYMOUS_CODING CG13062	TF binding site mE1_TFBS_HSA
3L	607068	3L_607068_SNP [dm3] 3L_607068_SNP [dm6]	A	T	1.552e^-4	0.896	UPSTREAM Reg-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14556892	3L_14556892_SNP [dm3] 3L_14563792_SNP [dm6]	G	A	1.556e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	21234687	3R_21234687_SNP [dm3] 3R_25408965_SNP [dm6]	C	G	1.557e^-4	0.896	INTRON Fur1
3R	24282674	3R_24282674_SNP [dm3] 3R_28456952_SNP [dm6]	T	G	1.562e^-4	0.896	INTRON beat-VI
3L	868498	3L_868498_SNP [dm3] 3L_868498_SNP [dm6]	A	G	1.565e^-4	0.896	INTRON CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7128192	3L_7128192_DEL [dm3] 3L_7135092_DEL [dm6]	TG	C	1.573e^-4	0.896	UTR_5_PRIME melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	18205056	2R_18205056_SNP [dm3] 2R_22317551_SNP [dm6]	C	T	1.586e^-4	0.896	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12282417	3L_12282417_SNP [dm3] 3L_12289317_SNP [dm6]	A	C	1.587e^-4	0.896	EXON CR45658
2R	17161116	2R_17161116_SNP [dm3] 2R_21273611_SNP [dm6]	G	A	1.587e^-4	0.896	INTRON Rgk3
2R	10270357	2R_10270357_SNP [dm3] 2R_14382852_SNP [dm6]	G	A	1.588e^-4	0.896	SYNONYMOUS_CODING Dh44-R1	TF binding site BDTNP1_TFBS_da
X	12796706	X_12796706_SNP [dm3] X_12902673_SNP [dm6]	T	C	1.594e^-4	0.896	SYNONYMOUS_CODING CG4407	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25271769	3R_25271769_SNP [dm3] 3R_29446047_SNP [dm6]	T	C	1.600e^-4	0.896	INTRON Ptp99A
2R	12992893	2R_12992893_SNP [dm3] 2R_17105388_SNP [dm6]	T	C	1.635e^-4	0.896	INTRON CG30456
3R	8066983	3R_8066983_SNP [dm3] 3R_12241261_SNP [dm6]	C	T	1.649e^-4	0.896	DOWNSTREAM CR44036 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6915716	2L_6915716_SNP [dm3] 2L_6915716_SNP [dm6]	G	A	1.650e^-4	0.896	SYNONYMOUS_CODING CG32829 INTRON x16
3R	12726857	3R_12726857_DEL [dm3] 3R_16901135_DEL [dm6]	TG	A	1.689e^-4	0.896	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1963825	2L_1963825_SNP [dm3] 2L_1963825_SNP [dm6]	T	C	1.690e^-4	0.896	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	6300334	X_6300334_SNP [dm3] X_6406301_SNP [dm6]	G	C	1.698e^-4	0.896	INTERGENIC
3L	8735415	3L_8735415_SNP [dm3] 3L_8742315_SNP [dm6]	T	G	1.705e^-4	0.896	INTRON Prm	TF binding site BDTNP1_TFBS_twi
X	2098912	X_2098912_SNP [dm3] X_2204879_SNP [dm6]	T	C	1.710e^-4	0.896	NON_SYNONYMOUS_CODING Mct1 DOWNSTREAM msta	TF binding site mE1_TFBS_chinmo
2L	9011295	2L_9011295_SNP [dm3] 2L_9011295_SNP [dm6]	G	A	1.712e^-4	0.896	UTR_3_PRIME CG9568 UPSTREAM CG13102
2R	13888523	2R_13888523_SNP [dm3] 2R_18001018_SNP [dm6]	G	T	1.713e^-4	0.896	INTRON dpr13
3R	26868621	3R_26868621_SNP [dm3] 3R_31042899_SNP [dm6]	T	C	1.722e^-4	0.896	INTRON CanA1
2R	16025962	2R_16025962_SNP [dm3] 2R_20138457_SNP [dm6]	T	A	1.725e^-4	0.896	DOWNSTREAM CR44635 & 1 other INTERGENIC
X	20117940	X_20117940_SNP [dm3] X_20246866_SNP [dm6]	T	A	1.725e^-4	0.896	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo
2L	1024449	2L_1024449_SNP [dm3] 2L_1024449_SNP [dm6]	T	G	1.727e^-4	0.896	INTRON IA-2
2L	1024450	2L_1024450_SNP [dm3] 2L_1024450_SNP [dm6]	T	A	1.727e^-4	0.896	INTRON IA-2
2R	19645254	2R_19645254_SNP [dm3] 2R_23757731_SNP [dm6]	C	T	1.733e^-4	0.896	SYNONYMOUS_CODING CG9850
2R	14494202	2R_14494202_SNP [dm3] 2R_18606697_SNP [dm6]	A	G	1.752e^-4	0.896	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	12726802	3R_12726802_SNP [dm3] 3R_16901080_SNP [dm6]	C	T	1.758e^-4	0.896	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12993213	2R_12993213_SNP [dm3] 2R_17105708_SNP [dm6]	C	T	1.766e^-4	0.896	INTRON CG30456
3L	8792094	3L_8792094_SNP [dm3] 3L_8798994_SNP [dm6]	T	A	1.779e^-4	0.896	DOWNSTREAM Fhos INTRON CG13310
3L	8792213	3L_8792213_SNP [dm3] 3L_8799113_SNP [dm6]	A	T	1.779e^-4	0.896	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
3L	20274356	3L_20274356_SNP [dm3] 3L_20281256_SNP [dm6]	G	T	1.801e^-4	0.896	INTRON gogo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23378172	3R_23378172_SNP [dm3] 3R_27552450_SNP [dm6]	C	T	1.809e^-4	0.896	INTRON Klp98A	TF binding site mE1_TFBS_cad
3L	8797635	3L_8797635_SNP [dm3] 3L_8804535_SNP [dm6]	C	T	1.810e^-4	0.896	UPSTREAM CG34427 & 1 other DOWNSTREAM CG34426 INTERGENIC
3R	9942241	3R_9942241_SNP [dm3] 3R_14116519_SNP [dm6]	G	A	1.811e^-4	0.896	INTRON Kif19A
3L	16268397	3L_16268397_SNP [dm3] 3L_16275297_SNP [dm6]	C	T	1.819e^-4	0.896	INTERGENIC
3L	7053492	3L_7053492_SNP [dm3] 3L_7060392_SNP [dm6]	C	T	1.834e^-4	0.896	SYNONYMOUS_CODING CG8641
2R	5983504	2R_5983504_SNP [dm3] 2R_10095999_SNP [dm6]	A	C	1.843e^-4	0.896	UTR_3_PRIME CG2269 UPSTREAM Jra	TF binding site BDTNP1_TFBS_dl
3R	26999487	3R_26999487_SNP [dm3] 3R_31173765_SNP [dm6]	C	T	1.859e^-4	0.896	INTRON Gycbeta100B
2L	12197469	2L_12197469_SNP [dm3] 2L_12197469_SNP [dm6]	T	G	1.865e^-4	0.896	INTRON aret
2L	9179818	2L_9179818_SNP [dm3] 2L_9179818_SNP [dm6]	T	G	1.868e^-4	0.896	INTRON tai	TF binding site mE1_TFBS_HSA
2L	16006118	2L_16006118_SNP [dm3] 2L_16006118_SNP [dm6]	G	A	1.870e^-4	0.896	UPSTREAM CR44844 DOWNSTREAM CG13245 & 1 other INTRON beat-Ic & 1 other
2L	6352275	2L_6352275_SNP [dm3] 2L_6352275_SNP [dm6]	C	A	1.877e^-4	0.896	DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	6352279	2L_6352279_SNP [dm3] 2L_6352279_SNP [dm6]	G	A	1.877e^-4	0.896	DOWNSTREAM ppk7 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	13568318	2R_13568318_SNP [dm3] 2R_17680813_SNP [dm6]	C	T	1.887e^-4	0.896	INTRON Sema-1b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19507055	2L_19507055_SNP [dm3] 2L_19507055_SNP [dm6]	A	G	1.898e^-4	0.896	INTRON CG10188	transposable element FlyBase
3R	6703737	3R_6703737_SNP [dm3] 3R_10878015_SNP [dm6]	G	A	1.898e^-4	0.896	NON_SYNONYMOUS_CODING Sodh-2 UPSTREAM CR45195 DOWNSTREAM CG14695	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13182540	3L_13182540_SNP [dm3] 3L_13189440_SNP [dm6]	T	C	1.899e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9170409	2L_9170409_SNP [dm3] 2L_9170409_SNP [dm6]	T	G	1.907e^-4	0.896	INTRON tai
X	17075900	X_17075900_DEL [dm3] X_17181867_DEL [dm6]	CA	C	1.909e^-4	0.896	INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	579533	2L_579533_SNP [dm3] 2L_579533_SNP [dm6]	G	T	1.922e^-4	0.896	UTR_3_PRIME Pph13
X	12923821	X_12923821_SNP [dm3] X_13029788_SNP [dm6]	C	G	1.936e^-4	0.896	UPSTREAM rad INTRON rad
3L	3462781	3L_3462781_SNP [dm3] 3L_3462781_SNP [dm6]	G	A	1.950e^-4	0.896	SYNONYMOUS_CODING armi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24716037	3R_24716037_SNP [dm3] 3R_28890315_SNP [dm6]	C	T	1.951e^-4	0.896	INTRON Doa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16396668	2L_16396668_DEL [dm3] 2L_16396668_DEL [dm6]	ATATT	A	1.958e^-4	0.896	INTERGENIC
2R	15105800	2R_15105800_SNP [dm3] 2R_19218295_SNP [dm6]	G	T	1.959e^-4	0.896	INTRON hppy
2L	9102596	2L_9102596_SNP [dm3] 2L_9102596_SNP [dm6]	A	C	1.960e^-4	0.896	INTERGENIC
2L	9102656	2L_9102656_SNP [dm3] 2L_9102656_SNP [dm6]	G	C	1.960e^-4	0.896	INTERGENIC
X	8469049	X_8469049_SNP [dm3] X_8575016_SNP [dm6]	C	T	1.973e^-4	0.896	INTRON CG12065	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	8469056	X_8469056_SNP [dm3] X_8575023_SNP [dm6]	C	A	1.973e^-4	0.896	INTRON CG12065	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
3R	468477	3R_468477_SNP [dm3] 3R_4642755_SNP [dm6]	T	G	1.982e^-4	0.896	SYNONYMOUS_CODING MED31 UPSTREAM CG9775 INTRON slx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13924060	2L_13924060_SNP [dm3] 2L_13924060_SNP [dm6]	T	G	1.989e^-4	0.896	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19485960	2R_19485960_SNP [dm3] 2R_23598437_SNP [dm6]	A	C	1.989e^-4	0.896	SYNONYMOUS_CODING apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16026006	2R_16026006_SNP [dm3] 2R_20138501_SNP [dm6]	C	G	1.993e^-4	0.896	DOWNSTREAM CR44635 & 1 other INTERGENIC
X	7744316	X_7744316_SNP [dm3] X_7850283_SNP [dm6]	G	T	1.999e^-4	0.896	INTERGENIC
3L	20279970	3L_20279970_SNP [dm3] 3L_20286870_SNP [dm6]	T	C	2.002e^-4	0.896	INTRON gogo
2L	6295669	2L_6295669_SNP [dm3] 2L_6295669_SNP [dm6]	T	A	2.004e^-4	0.896	INTRON Ddr
3R	26944050	3R_26944050_SNP [dm3] 3R_31118328_SNP [dm6]	G	A	2.004e^-4	0.896	INTERGENIC
X	20554938	X_20554938_SNP [dm3] X_20683911_SNP [dm6]	A	T	2.004e^-4	0.896	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	14651692	3L_14651692_SNP [dm3] 3L_14658592_SNP [dm6]	T	A	2.006e^-4	0.896	INTRON dlp
3L	14668997	3L_14668997_SNP [dm3] 3L_14675897_SNP [dm6]	G	A	2.006e^-4	0.896	INTRON ome & 1 other
2R	18325292	2R_18325292_INS [dm3] 2R_22437787_INS [dm6]	C	CACCGACCGAGAAGTGCTTT...	2.009e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	16819173	2R_16819173_SNP [dm3] 2R_20931668_SNP [dm6]	A	C	2.018e^-4	0.896	INTRON Rx
3L	16268689	3L_16268689_SNP [dm3] 3L_16275589_SNP [dm6]	C	A	2.018e^-4	0.896	INTERGENIC
X	15561783	X_15561783_SNP [dm3] X_15667750_SNP [dm6]	G	A	2.027e^-4	0.896	DOWNSTREAM CG15646 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	16302629	2R_16302629_SNP [dm3] 2R_20415124_SNP [dm6]	C	A	2.028e^-4	0.896	INTERGENIC
2L	9011371	2L_9011371_SNP [dm3] 2L_9011371_SNP [dm6]	A	C	2.029e^-4	0.896	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	9011409	2L_9011409_DEL [dm3] 2L_9011409_DEL [dm6]	CTAT	C	2.029e^-4	0.896	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
X	22224295	X_22224295_SNP [dm3] X_22822459_SNP [dm6]	A	C	2.033e^-4	0.896	INTERGENIC	transposable element FlyBase
3L	374192	3L_374192_SNP [dm3] 3L_374192_SNP [dm6]	G	A	2.037e^-4	0.896	INTRON trh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6099236	2R_6099236_SNP [dm3] 2R_10211731_SNP [dm6]	A	G	2.038e^-4	0.896	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6001949	2L_6001949_SNP [dm3] 2L_6001949_SNP [dm6]	A	G	2.043e^-4	0.896	UTR_3_PRIME Tsp26A
3R	24609426	3R_24609426_SNP [dm3] 3R_28783704_SNP [dm6]	T	C	2.052e^-4	0.896	INTERGENIC
3L	8943574	3L_8943574_INS [dm3] 3L_8950474_INS [dm6]	A	AT	2.059e^-4	0.896	INTRON orb2 & 1 other
2L	1948654	2L_1948654_SNP [dm3] 2L_1948654_SNP [dm6]	C	T	2.060e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
2L	1948657	2L_1948657_SNP [dm3] 2L_1948657_SNP [dm6]	C	T	2.060e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
2L	12542479	2L_12542479_SNP [dm3] 2L_12542479_SNP [dm6]	T	C	2.065e^-4	0.896	UPSTREAM CR42746 INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24716143	3R_24716143_SNP [dm3] 3R_28890421_SNP [dm6]	A	G	2.070e^-4	0.896	INTRON Doa	TF binding site BDTNP1_TFBS_dl
2L	879398	2L_879398_SNP [dm3] 2L_879398_SNP [dm6]	T	G	2.070e^-4	0.896	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
3L	15523191	3L_15523191_SNP [dm3] 3L_15530091_SNP [dm6]	A	C	2.081e^-4	0.896	UTR_3_PRIME CG43248 UPSTREAM obst-H
2L	1948793	2L_1948793_SNP [dm3] 2L_1948793_SNP [dm6]	A	C	2.102e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
2R	20185194	2R_20185194_SNP [dm3] 2R_24297671_SNP [dm6]	A	T	2.109e^-4	0.896	INTRON CG3394	TF binding site mE1_TFBS_chinmo
3L	15003027	3L_15003027_SNP [dm3] 3L_15009927_SNP [dm6]	A	C	2.119e^-4	0.896	INTRON Reck
3L	15003032	3L_15003032_SNP [dm3] 3L_15009932_SNP [dm6]	A	G	2.119e^-4	0.896	INTRON Reck
2L	634829	2L_634829_SNP [dm3] 2L_634829_SNP [dm6]	A	G	2.137e^-4	0.896	INTERGENIC
2R	6083016	2R_6083016_SNP [dm3] 2R_10195511_SNP [dm6]	C	T	2.140e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	2518782	2L_2518782_SNP [dm3] 2L_2518782_SNP [dm6]	A	G	2.148e^-4	0.896	UPSTREAM CG3528 INTERGENIC
2L	2745658	2L_2745658_SNP [dm3] 2L_2745658_SNP [dm6]	A	G	2.151e^-4	0.896	NON_SYNONYMOUS_CODING Cwc25 UPSTREAM CG9961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	2745675	2L_2745675_SNP [dm3] 2L_2745675_SNP [dm6]	A	G	2.151e^-4	0.896	SYNONYMOUS_CODING Cwc25 UPSTREAM CG9961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	18146927	2R_18146927_SNP [dm3] 2R_22259422_SNP [dm6]	T	C	2.154e^-4	0.896	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	22333366	3R_22333366_DEL [dm3] 3R_26507644_DEL [dm6]	AAC	A	2.162e^-4	0.896	INTRON plum
X	15288812	X_15288812_SNP [dm3] X_15394779_SNP [dm6]	G	C	2.168e^-4	0.896	INTRON Cngl
2L	7527214	2L_7527214_SNP [dm3] 2L_7527214_SNP [dm6]	G	A	2.182e^-4	0.896	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7528884	2L_7528884_SNP [dm3] 2L_7528884_SNP [dm6]	A	G	2.182e^-4	0.896	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7531844	2L_7531844_SNP [dm3] 2L_7531844_SNP [dm6]	T	A	2.182e^-4	0.896	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17515642	2R_17515642_SNP [dm3] 2R_21628137_SNP [dm6]	A	G	2.214e^-4	0.896	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12992791	2R_12992791_SNP [dm3] 2R_17105286_SNP [dm6]	T	C	2.217e^-4	0.896	INTRON CG30456
3L	10807689	3L_10807689_SNP [dm3] 3L_10814589_SNP [dm6]	A	G	2.219e^-4	0.896	UPSTREAM CG42831 INTERGENIC
2R	4406412	2R_4406412_SNP [dm3] 2R_8518907_SNP [dm6]	G	T	2.227e^-4	0.896	INTRON mtt
2R	4406415	2R_4406415_SNP [dm3] 2R_8518910_SNP [dm6]	G	A	2.227e^-4	0.896	INTRON mtt
2R	4406416	2R_4406416_SNP [dm3] 2R_8518911_SNP [dm6]	C	T	2.227e^-4	0.896	INTRON mtt
2L	3928504	2L_3928504_SNP [dm3] 2L_3928504_SNP [dm6]	A	C	2.235e^-4	0.896	INTRON fred
3R	21386495	3R_21386495_SNP [dm3] 3R_25560773_SNP [dm6]	A	G	2.240e^-4	0.896	INTRON msi
X	9297985	X_9297985_SNP [dm3] X_9403952_SNP [dm6]	C	T	2.256e^-4	0.896	INTRON mgl
3L	15921506	3L_15921506_SNP [dm3] 3L_15928406_SNP [dm6]	G	C	2.259e^-4	0.896	SPLICE_SITE_REGION Pka-C3 INTRON Pka-C3
2R	16522329	2R_16522329_SNP [dm3] 2R_20634824_SNP [dm6]	G	A	2.262e^-4	0.896	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
X	2096584	X_2096584_SNP [dm3] X_2202551_SNP [dm6]	C	T	2.264e^-4	0.896	SYNONYMOUS_CODING CG18031 UPSTREAM CR43637 INTRON Mct1	TF binding site mE1_TFBS_chinmo
X	2326765	X_2326765_INS [dm3] X_2432732_INS [dm6]	G	GCCGATCGA	2.272e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	8233386	2L_8233386_SNP [dm3] 2L_8233386_SNP [dm6]	T	G	2.279e^-4	0.896	INTRON Pvr	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2R	4451503	2R_4451503_SNP [dm3] 2R_8563998_SNP [dm6]	C	G	2.297e^-4	0.896	DOWNSTREAM Cyp6a14 INTERGENIC
2R	4451521	2R_4451521_SNP [dm3] 2R_8564016_SNP [dm6]	C	T	2.297e^-4	0.896	DOWNSTREAM Cyp6a14 INTERGENIC
3R	8585975	3R_8585975_DEL [dm3] 3R_12760253_DEL [dm6]	TTGCAAAACT	T	2.302e^-4	0.896	INTRON beat-Vc
3R	26868625	3R_26868625_SNP [dm3] 3R_31042903_SNP [dm6]	T	A	2.303e^-4	0.896	INTRON CanA1
3L	6483046	3L_6483046_SNP [dm3] 3L_6489946_SNP [dm6]	A	C	2.313e^-4	0.896	SYNONYMOUS_CODING CG8270
2L	1938798	2L_1938798_SNP [dm3] 2L_1938798_SNP [dm6]	T	C	2.313e^-4	0.896	UPSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	1938913	2L_1938913_SNP [dm3] 2L_1938913_SNP [dm6]	C	T	2.313e^-4	0.896	NON_SYNONYMOUS_CODING CG7337 UPSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	16374890	X_16374890_DEL [dm3] X_16480857_DEL [dm6]	AA	A	2.316e^-4	0.896	INTRON para
X	2090183	X_2090183_SNP [dm3] X_2196150_SNP [dm6]	T	C	2.317e^-4	0.896	INTRON Mct1
3R	19189928	3R_19189928_SNP [dm3] 3R_23364206_SNP [dm6]	G	C	2.317e^-4	0.896	UPSTREAM CG4408 INTERGENIC
3L	8205466	3L_8205466_SNP [dm3] 3L_8212366_SNP [dm6]	T	G	2.318e^-4	0.896	NON_SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad
X	2098533	X_2098533_SNP [dm3] X_2204500_SNP [dm6]	T	C	2.330e^-4	0.896	UPSTREAM CG18031 INTRON Mct1	TF binding site mE1_TFBS_chinmo
3L	1928048	3L_1928048_SNP [dm3] 3L_1928048_SNP [dm6]	G	C	2.333e^-4	0.896	INTRON Dbx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1742131	2L_1742131_SNP [dm3] 2L_1742131_SNP [dm6]	A	T	2.343e^-4	0.896	INTRON CG17646	TF binding site mE1_TFBS_chinmo
3R	23606028	3R_23606028_SNP [dm3] 3R_27780306_SNP [dm6]	A	G	2.350e^-4	0.896	INTRON CG34353
2R	18184246	2R_18184246_SNP [dm3] 2R_22296741_SNP [dm6]	T	C	2.365e^-4	0.896	SYNONYMOUS_CODING CG5819	TF binding site mE1_TFBS_cad
3R	4914749	3R_4914749_SNP [dm3] 3R_9089027_SNP [dm6]	A	C	2.366e^-4	0.896	INTRON pum
2R	12476710	2R_12476710_SNP [dm3] 2R_16589205_SNP [dm6]	G	T	2.382e^-4	0.896	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14744014	2R_14744014_SNP [dm3] 2R_18856509_SNP [dm6]	A	G	2.400e^-4	0.896	SYNONYMOUS_CODING Jheh2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9810189	3L_9810189_SNP [dm3] 3L_9817089_SNP [dm6]	C	A	2.402e^-4	0.896	INTRON CG43897
3L	12099347	3L_12099347_SNP [dm3] 3L_12106247_SNP [dm6]	T	C	2.404e^-4	0.896	INTERGENIC
2R	4871984	2R_4871984_SNP [dm3] 2R_8984479_SNP [dm6]	G	T	2.408e^-4	0.896	INTRON CG8213	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	6866732	3L_6866732_SNP [dm3] 3L_6873632_SNP [dm6]	T	C	2.408e^-4	0.896	INTERGENIC
3L	16268769	3L_16268769_SNP [dm3] 3L_16275669_SNP [dm6]	G	T	2.421e^-4	0.896	INTERGENIC
2R	14494177	2R_14494177_SNP [dm3] 2R_18606672_SNP [dm6]	A	G	2.429e^-4	0.896	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	14711796	3L_14711796_SNP [dm3] 3L_14718696_SNP [dm6]	T	C	2.433e^-4	0.896	INTRON ome
2L	4462628	2L_4462628_SNP [dm3] 2L_4462628_SNP [dm6]	T	G	2.436e^-4	0.896	SYNONYMOUS_CODING CG15443 UPSTREAM CG15436 DOWNSTREAM CG15435	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	26975328	3R_26975328_SNP [dm3] 3R_31149606_SNP [dm6]	A	G	2.437e^-4	0.896	INTRON Gycbeta100B
2R	14366046	2R_14366046_SNP [dm3] 2R_18478541_SNP [dm6]	G	T	2.440e^-4	0.896	INTRON CG30116
2L	15628711	2L_15628711_SNP [dm3] 2L_15628711_SNP [dm6]	C	G	2.444e^-4	0.896	NON_SYNONYMOUS_CODING CG7631
3R	21994362	3R_21994362_SNP [dm3] 3R_26168640_SNP [dm6]	T	A	2.449e^-4	0.896	INTERGENIC
2R	7267871	2R_7267871_SNP [dm3] 2R_11380366_SNP [dm6]	A	C	2.450e^-4	0.896	UTR_3_PRIME Sod3 DOWNSTREAM Sod3
3L	11427444	3L_11427444_SNP [dm3] 3L_11434344_SNP [dm6]	C	T	2.450e^-4	0.896	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	2840977	3L_2840977_SNP [dm3] 3L_2840977_SNP [dm6]	T	C	2.450e^-4	0.896	INTRON CG43444
3L	8436068	3L_8436068_MNP [dm3] 3L_8442968_MNP [dm6]	CTG	TAT	2.450e^-4	0.896	UPSTREAM Unr DOWNSTREAM CG6983 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6704963	3R_6704963_SNP [dm3] 3R_10879241_SNP [dm6]	A	G	2.450e^-4	0.896	SYNONYMOUS_CODING CG14695 DOWNSTREAM Sodh-2 & 1 other	TF binding site mE1_TFBS_HSA
X	16790548	X_16790548_SNP [dm3] X_16896515_SNP [dm6]	C	T	2.450e^-4	0.896	SYNONYMOUS_CODING CG33252
X	3957092	X_3957092_SNP [dm3] X_4063059_SNP [dm6]	T	A	2.450e^-4	0.896	INTERGENIC
X	4425239	X_4425239_SNP [dm3] X_4531206_SNP [dm6]	T	C	2.450e^-4	0.896	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
X	4425240	X_4425240_SNP [dm3] X_4531207_SNP [dm6]	C	T	2.450e^-4	0.896	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
X	4425243	X_4425243_SNP [dm3] X_4531210_SNP [dm6]	A	G	2.450e^-4	0.896	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
X	4425269	X_4425269_INS [dm3] X_4531236_INS [dm6]	A	AA	2.450e^-4	0.896	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
X	4456547	X_4456547_SNP [dm3] X_4562514_SNP [dm6]	T	C	2.450e^-4	0.896	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10315999	3L_10315999_SNP [dm3] 3L_10322899_SNP [dm6]	C	A	2.454e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	19055564	X_19055564_SNP [dm3] X_19161531_SNP [dm6]	T	C	2.458e^-4	0.896	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
2L	13580408	2L_13580408_SNP [dm3] 2L_13580408_SNP [dm6]	T	G	2.459e^-4	0.896	INTRON kuz
3L	18404099	3L_18404099_SNP [dm3] 3L_18410999_SNP [dm6]	A	T	2.461e^-4	0.896	INTERGENIC
2L	18825078	2L_18825078_SNP [dm3] 2L_18825078_SNP [dm6]	G	A	2.471e^-4	0.896	SYNONYMOUS_CODING CG17323	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1939529	2L_1939529_SNP [dm3] 2L_1939529_SNP [dm6]	T	C	2.477e^-4	0.896	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24717290	3R_24717290_SNP [dm3] 3R_28891568_SNP [dm6]	G	A	2.483e^-4	0.896	UPSTREAM Doa INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19353419	2R_19353419_INS [dm3] 2R_23465896_INS [dm6]	T	TT	2.488e^-4	0.896	INTRON CG43795
2L	1742051	2L_1742051_SNP [dm3] 2L_1742051_SNP [dm6]	G	A	2.488e^-4	0.896	SYNONYMOUS_CODING CG17646	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24720315	3R_24720315_SNP [dm3] 3R_28894593_SNP [dm6]	T	G	2.490e^-4	0.896	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
3R	24720316	3R_24720316_SNP [dm3] 3R_28894594_SNP [dm6]	C	G	2.490e^-4	0.896	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo
X	8637222	X_8637222_SNP [dm3] X_8743189_SNP [dm6]	T	A	2.492e^-4	0.896	INTERGENIC
3R	17851479	3R_17851479_SNP [dm3] 3R_22025757_SNP [dm6]	G	A	2.506e^-4	0.896	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12963897	2L_12963897_SNP [dm3] 2L_12963897_SNP [dm6]	A	G	2.511e^-4	0.896	INTERGENIC
2R	12476929	2R_12476929_SNP [dm3] 2R_16589424_SNP [dm6]	G	T	2.519e^-4	0.896	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14718917	2R_14718917_SNP [dm3] 2R_18831412_SNP [dm6]	A	G	2.545e^-4	0.896	INTRON CG15082
X	19045879	X_19045879_SNP [dm3] X_19151846_SNP [dm6]	C	T	2.545e^-4	0.896	SYNONYMOUS_CODING RhoGAP18B INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
X	13204342	X_13204342_SNP [dm3] X_13310309_SNP [dm6]	C	G	2.548e^-4	0.896	INTRON IP3K2
2L	10173712	2L_10173712_SNP [dm3] 2L_10173712_SNP [dm6]	C	A	2.552e^-4	0.896	NON_SYNONYMOUS_CODING CG13137 INTRON CG44153	TF binding site mE1_TFBS_cad
3L	11348030	3L_11348030_SNP [dm3] 3L_11354930_SNP [dm6]	T	A	2.567e^-4	0.896	INTERGENIC
2R	3519541	2R_3519541_SNP [dm3] 2R_7632036_SNP [dm6]	C	T	2.571e^-4	0.896	UPSTREAM CG43341 INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2L	1738288	2L_1738288_SNP [dm3] 2L_1738288_SNP [dm6]	T	C	2.590e^-4	0.896	INTRON CG17646	TF binding site mE1_TFBS_Trl
2R	10273759	2R_10273759_SNP [dm3] 2R_14386254_SNP [dm6]	C	T	2.594e^-4	0.896	DOWNSTREAM Dh44-R1 INTERGENIC
3R	23948526	3R_23948526_SNP [dm3] 3R_28122804_SNP [dm6]	T	C	2.601e^-4	0.896	INTERGENIC
3L	11408171	3L_11408171_SNP [dm3] 3L_11415071_SNP [dm6]	T	C	2.602e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19358498	3R_19358498_SNP [dm3] 3R_23532776_SNP [dm6]	T	A	2.603e^-4	0.896	DOWNSTREAM CG10170 INTERGENIC
3R	19358514	3R_19358514_INS [dm3] 3R_23532792_INS [dm6]	T	TAAATAA	2.603e^-4	0.896	DOWNSTREAM CG10170 INTERGENIC
2R	19605150	2R_19605150_SNP [dm3] 2R_23717627_SNP [dm6]	C	T	2.609e^-4	0.896	INTRON Sesn	TF binding site mE1_TFBS_chinmo
3L	7053470	3L_7053470_SNP [dm3] 3L_7060370_SNP [dm6]	G	T	2.613e^-4	0.896	SYNONYMOUS_CODING CG8641
2R	20192251	2R_20192251_SNP [dm3] 2R_24304728_SNP [dm6]	G	A	2.615e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
3R	19180953	3R_19180953_SNP [dm3] 3R_23355231_SNP [dm6]	A	C	2.625e^-4	0.896	UTR_3_PRIME ATPsyn-Cf6 DOWNSTREAM ATPsyn-Cf6 & 1 other	TF binding site mE1_TFBS_HSA
2L	12667613	2L_12667613_SNP [dm3] 2L_12667613_SNP [dm6]	G	T	2.628e^-4	0.896	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_twi
2R	17372005	2R_17372005_SNP [dm3] 2R_21484500_SNP [dm6]	C	T	2.628e^-4	0.896	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12650300	2L_12650300_SNP [dm3] 2L_12650300_SNP [dm6]	C	T	2.632e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8323170	2L_8323170_SNP [dm3] 2L_8323170_SNP [dm6]	T	A	2.640e^-4	0.896	INTRON CG7781
3R	19180997	3R_19180997_SNP [dm3] 3R_23355275_SNP [dm6]	C	A	2.641e^-4	0.896	UTR_3_PRIME ATPsyn-Cf6 DOWNSTREAM ATPsyn-Cf6 & 1 other	TF binding site mE1_TFBS_HSA
2L	1943944	2L_1943944_SNP [dm3] 2L_1943944_SNP [dm6]	G	C	2.648e^-4	0.896	UTR_3_PRIME CG7337 DOWNSTREAM CG7337
3L	14097058	3L_14097058_SNP [dm3] 3L_14103958_SNP [dm6]	C	T	2.666e^-4	0.896	UTR_3_PRIME Sox21a
2R	8484995	2R_8484995_SNP [dm3] 2R_12597490_SNP [dm6]	A	G	2.673e^-4	0.896	INTRON Amph
2R	8484996	2R_8484996_SNP [dm3] 2R_12597491_SNP [dm6]	C	A	2.673e^-4	0.896	INTRON Amph
2R	8485002	2R_8485002_SNP [dm3] 2R_12597497_SNP [dm6]	T	C	2.673e^-4	0.896	INTRON Amph
3R	6703927	3R_6703927_SNP [dm3] 3R_10878205_SNP [dm6]	C	A	2.675e^-4	0.896	UTR_3_PRIME Sodh-2 & 1 other UPSTREAM CR45195	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6703950	3R_6703950_SNP [dm3] 3R_10878228_SNP [dm6]	G	A	2.675e^-4	0.896	UTR_3_PRIME Sodh-2 & 1 other UPSTREAM CR45195	TF binding site mE1_TFBS_chinmo
X	18601784	X_18601784_SNP [dm3] X_18707751_SNP [dm6]	T	A	2.680e^-4	0.896	UTR_3_PRIME CCKLR-17D1
2L	262133	2L_262133_SNP [dm3] 2L_262133_SNP [dm6]	T	A	2.684e^-4	0.896	UTR_3_PRIME CG17075 UPSTREAM CR44219 INTRON CG3645
2R	11524596	2R_11524596_SNP [dm3] 2R_15637091_SNP [dm6]	G	T	2.684e^-4	0.896	INTRON CG42524
2R	20191181	2R_20191181_SNP [dm3] 2R_24303658_SNP [dm6]	T	G	2.684e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
2R	20191309	2R_20191309_SNP [dm3] 2R_24303786_SNP [dm6]	A	G	2.684e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
2R	20191400	2R_20191400_SNP [dm3] 2R_24303877_SNP [dm6]	G	A	2.684e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
X	20627820	X_20627820_SNP [dm3] X_20756793_SNP [dm6]	G	T	2.697e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	7036136	2L_7036136_SNP [dm3] 2L_7036136_SNP [dm6]	T	C	2.699e^-4	0.896	INTRON CG11266	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16749110	3R_16749110_SNP [dm3] 3R_20923388_SNP [dm6]	G	A	2.701e^-4	0.896	INTRON CG31191 & 1 other
2L	18415713	2L_18415713_SNP [dm3] 2L_18415713_SNP [dm6]	T	G	2.703e^-4	0.896	INTERGENIC
3R	6705019	3R_6705019_SNP [dm3] 3R_10879297_SNP [dm6]	T	C	2.705e^-4	0.896	UTR_5_PRIME CG14695 DOWNSTREAM Tpc1	TF binding site mE1_TFBS_HSA
3R	6705370	3R_6705370_SNP [dm3] 3R_10879648_SNP [dm6]	C	T	2.705e^-4	0.896	UTR_3_PRIME Tpc1 UPSTREAM CG14695	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24610942	3R_24610942_SNP [dm3] 3R_28785220_SNP [dm6]	T	C	2.709e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6166656	2L_6166656_DEL [dm3] 2L_6166656_DEL [dm6]	AT	C	2.716e^-4	0.896	INTERGENIC
3R	21898703	3R_21898703_SNP [dm3] 3R_26072981_SNP [dm6]	A	C	2.731e^-4	0.896	INTERGENIC
2L	7515132	2L_7515132_SNP [dm3] 2L_7515132_SNP [dm6]	C	A	2.732e^-4	0.896	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6309567	2L_6309567_SNP [dm3] 2L_6309567_SNP [dm6]	G	A	2.741e^-4	0.896	UPSTREAM CG43922 DOWNSTREAM CG13984 INTRON Ddr	TF binding site mE1_TFBS_cad
3R	4323786	3R_4323786_SNP [dm3] 3R_8498064_SNP [dm6]	A	T	2.745e^-4	0.896	INTERGENIC
X	12533776	X_12533776_SNP [dm3] X_12639743_SNP [dm6]	C	A	2.752e^-4	0.896	INTRON Tomosyn	TF binding site BDTNP1_TFBS_da
3L	12987464	3L_12987464_SNP [dm3] 3L_12994364_SNP [dm6]	C	T	2.753e^-4	0.896	UPSTREAM CG11262 INTERGENIC
3R	12726875	3R_12726875_SNP [dm3] 3R_16901153_SNP [dm6]	A	C	2.767e^-4	0.896	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12726892	3R_12726892_SNP [dm3] 3R_16901170_SNP [dm6]	A	T	2.767e^-4	0.896	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13005259	3L_13005259_SNP [dm3] 3L_13012159_SNP [dm6]	T	A	2.773e^-4	0.896	SYNONYMOUS_CODING MICAL-like UPSTREAM CG11261
2R	10267662	2R_10267662_SNP [dm3] 2R_14380157_SNP [dm6]	G	T	2.776e^-4	0.896	INTRON Dh44-R1
3L	11667360	3L_11667360_SNP [dm3] 3L_11674260_SNP [dm6]	A	G	2.786e^-4	0.896	SPLICE_SITE_REGION CG32085 INTRON CG32085	TF binding site mE1_TFBS_cad
2R	19032449	2R_19032449_SNP [dm3] 2R_23144926_SNP [dm6]	G	C	2.786e^-4	0.896	DOWNSTREAM Klp59D INTERGENIC
2R	19032453	2R_19032453_SNP [dm3] 2R_23144930_SNP [dm6]	C	T	2.786e^-4	0.896	DOWNSTREAM Klp59D INTERGENIC
3R	24721743	3R_24721743_SNP [dm3] 3R_28896021_SNP [dm6]	C	A	2.786e^-4	0.896	INTRON Doa
2L	13204778	2L_13204778_SNP [dm3] 2L_13204778_SNP [dm6]	A	G	2.796e^-4	0.896	INTRON Pect	TF binding site BDTNP1_TFBS_dl
X	15356548	X_15356548_SNP [dm3] X_15462515_SNP [dm6]	A	C	2.796e^-4	0.896	UPSTREAM CG6299 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	15356704	X_15356704_SNP [dm3] X_15462671_SNP [dm6]	G	C	2.796e^-4	0.896	UPSTREAM CG6299 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_h mE1_TFBS_HSA
X	15288791	X_15288791_SNP [dm3] X_15394758_SNP [dm6]	A	T	2.809e^-4	0.896	INTRON Cngl
X	15288798	X_15288798_SNP [dm3] X_15394765_SNP [dm6]	T	G	2.809e^-4	0.896	INTRON Cngl
2L	7854140	2L_7854140_SNP [dm3] 2L_7854140_SNP [dm6]	T	A	2.816e^-4	0.896	INTRON CG14535
2L	7854150	2L_7854150_SNP [dm3] 2L_7854150_SNP [dm6]	G	C	2.816e^-4	0.896	INTRON CG14535
2L	7854151	2L_7854151_SNP [dm3] 2L_7854151_SNP [dm6]	T	A	2.816e^-4	0.896	INTRON CG14535
2R	18866633	2R_18866633_SNP [dm3] 2R_22979110_SNP [dm6]	C	G	2.816e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4329536	X_4329536_SNP [dm3] X_4435503_SNP [dm6]	A	C	2.827e^-4	0.896	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3R	13884298	3R_13884298_SNP [dm3] 3R_18058576_SNP [dm6]	T	G	2.829e^-4	0.896	INTERGENIC
2L	16871780	2L_16871780_SNP [dm3] 2L_16871780_SNP [dm6]	A	G	2.836e^-4	0.896	INTRON CR31781
3R	11132814	3R_11132814_SNP [dm3] 3R_15307092_SNP [dm6]	A	C	2.837e^-4	0.896	SYNONYMOUS_CODING Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7351154	2R_7351154_SNP [dm3] 2R_11463649_SNP [dm6]	G	C	2.839e^-4	0.896	UTR_3_PRIME E_Pc_	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	23861775	3R_23861775_SNP [dm3] 3R_28036053_SNP [dm6]	G	A	2.845e^-4	0.896	INTRON CG34362
3L	13370452	3L_13370452_SNP [dm3] 3L_13377352_SNP [dm6]	C	T	2.855e^-4	0.896	UPSTREAM CG14111 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	12852267	X_12852267_SNP [dm3] X_12958234_SNP [dm6]	C	T	2.871e^-4	0.896	UPSTREAM hec & 1 other INTERGENIC
2L	1942764	2L_1942764_SNP [dm3] 2L_1942764_SNP [dm6]	G	A	2.872e^-4	0.896	INTRON CG7337
3R	24608844	3R_24608844_SNP [dm3] 3R_28783122_SNP [dm6]	T	A	2.883e^-4	0.896	INTERGENIC
3L	14712403	3L_14712403_SNP [dm3] 3L_14719303_SNP [dm6]	C	A	2.894e^-4	0.896	INTRON ome
2L	18423221	2L_18423221_SNP [dm3] 2L_18423221_SNP [dm6]	A	C	2.895e^-4	0.896	INTERGENIC
2R	4406419	2R_4406419_SNP [dm3] 2R_8518914_SNP [dm6]	G	A	2.914e^-4	0.896	INTRON mtt
X	22224156	X_22224156_SNP [dm3] X_22822320_SNP [dm6]	G	C	2.920e^-4	0.896	INTERGENIC	transposable element FlyBase
2L	14028090	2L_14028090_SNP [dm3] 2L_14028090_SNP [dm6]	G	A	2.921e^-4	0.896	SYNONYMOUS_CODING CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3197630	2L_3197630_SNP [dm3] 2L_3197630_SNP [dm6]	T	C	2.930e^-4	0.896	INTRON CG34393
2R	5489926	2R_5489926_SNP [dm3] 2R_9602421_SNP [dm6]	A	G	2.930e^-4	0.896	SYNONYMOUS_CODING CG30339 INTRON CG1902
X	8634609	X_8634609_SNP [dm3] X_8740576_SNP [dm6]	C	T	2.936e^-4	0.896	INTERGENIC
2L	6686359	2L_6686359_SNP [dm3] 2L_6686359_SNP [dm6]	C	T	2.938e^-4	0.896	NON_SYNONYMOUS_CODING CG11327 DOWNSTREAM Tsp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
2R	14506215	2R_14506215_SNP [dm3] 2R_18618710_SNP [dm6]	A	G	2.946e^-4	0.896	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3891623	2L_3891623_SNP [dm3] 2L_3891623_SNP [dm6]	G	A	2.954e^-4	0.896	INTRON capu
2L	5556165	2L_5556165_SNP [dm3] 2L_5556165_SNP [dm6]	A	G	2.962e^-4	0.896	SYNONYMOUS_CODING GluRIIA
2L	13138083	2L_13138083_SNP [dm3] 2L_13138083_SNP [dm6]	T	C	2.976e^-4	0.896	INTERGENIC
2R	20179040	2R_20179040_SNP [dm3] 2R_24291517_SNP [dm6]	A	T	2.978e^-4	0.896	DOWNSTREAM nvy INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4698327	3L_4698327_INS [dm3] 3L_4698327_INS [dm6]	G	GCCAAG	2.979e^-4	0.896	DOWNSTREAM CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16380550	2L_16380550_SNP [dm3] 2L_16380550_SNP [dm6]	G	A	2.983e^-4	0.896	INTERGENIC
X	6101970	X_6101970_SNP [dm3] X_6207937_SNP [dm6]	A	T	2.995e^-4	0.896	INTERGENIC
X	4425393	X_4425393_SNP [dm3] X_4531360_SNP [dm6]	C	A	3.000e^-4	0.896	NON_SYNONYMOUS_CODING CG3556 INTRON CR32773
X	4554273	X_4554273_SNP [dm3] X_4660240_SNP [dm6]	C	T	3.000e^-4	0.896	INTRON CG3009	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	18200536	2R_18200536_SNP [dm3] 2R_22313031_SNP [dm6]	C	A	3.001e^-4	0.896	INTRON CR44758
2R	14858979	2R_14858979_SNP [dm3] 2R_18971474_SNP [dm6]	C	A	3.006e^-4	0.896	UTR_3_PRIME CG15107 UPSTREAM prod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
2R	10276953	2R_10276953_SNP [dm3] 2R_14389448_SNP [dm6]	G	T	3.009e^-4	0.896	INTERGENIC
2R	8490943	2R_8490943_SNP [dm3] 2R_12603438_SNP [dm6]	A	C	3.015e^-4	0.896	INTRON Amph
2L	1836841	2L_1836841_SNP [dm3] 2L_1836841_SNP [dm6]	C	T	3.029e^-4	0.896	INTRON wry
X	13478855	X_13478855_INS [dm3] X_13584822_INS [dm6]	T	TT	3.031e^-4	0.896	INTRON Tango13
3R	26475359	3R_26475359_SNP [dm3] 3R_30649637_SNP [dm6]	C	T	3.031e^-4	0.896	SYNONYMOUS_CODING CG34432 UPSTREAM CG34433	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	8319839	X_8319839_SNP [dm3] X_8425806_SNP [dm6]	C	G	3.045e^-4	0.896	NON_SYNONYMOUS_CODING Trf2 START_GAINED Trf2 UTR_5_PRIME Trf2	TF binding site mE1_TFBS_sens
3R	4959167	3R_4959167_SNP [dm3] 3R_9133445_SNP [dm6]	G	A	3.054e^-4	0.896	INTRON pum
2R	13551081	2R_13551081_SNP [dm3] 2R_17663576_SNP [dm6]	G	C	3.058e^-4	0.896	INTRON CCHa1-R
2L	3040977	2L_3040977_SNP [dm3] 2L_3040977_SNP [dm6]	A	G	3.063e^-4	0.896	SYNONYMOUS_CODING CG17221	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17424348	3R_17424348_SNP [dm3] 3R_21598626_SNP [dm6]	T	C	3.076e^-4	0.896	INTRON InR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8719940	X_8719940_SNP [dm3] X_8825907_SNP [dm6]	G	A	3.078e^-4	0.896	INTERGENIC
3L	10650422	3L_10650422_DEL [dm3] 3L_10657322_DEL [dm6]	AAAAAT	G	3.088e^-4	0.896	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	14441035	2L_14441035_SNP [dm3] 2L_14441035_SNP [dm6]	T	A	3.101e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17576441	3R_17576441_SNP [dm3] 3R_21750719_SNP [dm6]	C	T	3.117e^-4	0.896	INTRON CG31233	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16625309	2R_16625309_SNP [dm3] 2R_20737804_SNP [dm6]	T	C	3.123e^-4	0.896	INTRON dpr
2L	6579175	2L_6579175_SNP [dm3] 2L_6579175_SNP [dm6]	A	T	3.124e^-4	0.896	INTRON CG11319
3L	4698306	3L_4698306_SNP [dm3] 3L_4698306_SNP [dm6]	A	G	3.126e^-4	0.896	DOWNSTREAM CG13713 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad
3L	16165582	3L_16165582_SNP [dm3] 3L_16172482_SNP [dm6]	A	C	3.128e^-4	0.896	INTERGENIC
3R	7276897	3R_7276897_SNP [dm3] 3R_11451175_SNP [dm6]	C	T	3.139e^-4	0.896	UPSTREAM sals INTRON CG17230 & 1 other
2L	9170469	2L_9170469_SNP [dm3] 2L_9170469_SNP [dm6]	T	C	3.145e^-4	0.896	INTRON tai
2L	8609724	2L_8609724_SNP [dm3] 2L_8609724_SNP [dm6]	T	A	3.161e^-4	0.896	INTRON Sema-1a
2R	7643668	2R_7643668_SNP [dm3] 2R_11756163_SNP [dm6]	T	C	3.164e^-4	0.896	UPSTREAM ths INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13185978	3L_13185978_SNP [dm3] 3L_13192878_SNP [dm6]	T	C	3.168e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26944396	3R_26944396_SNP [dm3] 3R_31118674_SNP [dm6]	T	G	3.179e^-4	0.896	INTERGENIC
3R	10582140	3R_10582140_SNP [dm3] 3R_14756418_SNP [dm6]	T	A	3.181e^-4	0.896	INTRON jvl
2L	9102690	2L_9102690_SNP [dm3] 2L_9102690_SNP [dm6]	T	G	3.182e^-4	0.896	INTERGENIC
3L	607035	3L_607035_SNP [dm3] 3L_607035_SNP [dm6]	A	T	3.189e^-4	0.896	UPSTREAM Reg-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18694079	2R_18694079_SNP [dm3] 2R_22806574_SNP [dm6]	A	G	3.189e^-4	0.896	UPSTREAM CycB INTRON CycB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17001343	X_17001343_SNP [dm3] X_17107310_SNP [dm6]	C	A	3.198e^-4	0.896	UPSTREAM CG5004 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
X	17001350	X_17001350_SNP [dm3] X_17107317_SNP [dm6]	G	C	3.198e^-4	0.896	UPSTREAM CG5004 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	18459171	2R_18459171_SNP [dm3] 2R_22571666_SNP [dm6]	T	G	3.198e^-4	0.896	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2326787	X_2326787_SNP [dm3] X_2432754_SNP [dm6]	G	A	3.226e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	7800841	2R_7800841_SNP [dm3] 2R_11913336_SNP [dm6]	T	C	3.229e^-4	0.896	UPSTREAM CG13183 INTERGENIC
3L	2701184	3L_2701184_SNP [dm3] 3L_2701184_SNP [dm6]	G	A	3.230e^-4	0.896	INTRON Fife
3L	6576297	3L_6576297_SNP [dm3] 3L_6583197_SNP [dm6]	C	A	3.235e^-4	0.896	INTRON CG18769 & 1 other
2R	18200714	2R_18200714_SNP [dm3] 2R_22313209_SNP [dm6]	G	T	3.236e^-4	0.896	INTRON CR44758
2L	2467733	2L_2467733_SNP [dm3] 2L_2467733_SNP [dm6]	G	A	3.236e^-4	0.896	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cad
2L	2467749	2L_2467749_SNP [dm3] 2L_2467749_SNP [dm6]	A	G	3.236e^-4	0.896	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cad
2L	2467783	2L_2467783_SNP [dm3] 2L_2467783_SNP [dm6]	C	T	3.236e^-4	0.896	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cad
X	4089009	X_4089009_SNP [dm3] X_4194976_SNP [dm6]	C	A	3.252e^-4	0.896	INTRON Fas2
3L	3897971	3L_3897971_SNP [dm3] 3L_3897971_SNP [dm6]	A	C	3.255e^-4	0.896	DOWNSTREAM CG14977 INTRON Ccz1	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	1952172	2L_1952172_SNP [dm3] 2L_1952172_SNP [dm6]	G	T	3.259e^-4	0.896	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6864438	2L_6864438_SNP [dm3] 2L_6864438_SNP [dm6]	C	T	3.274e^-4	0.896	UTR_5_PRIME Nha1 INTRON Nha1
2R	6266430	2R_6266430_SNP [dm3] 2R_10378925_SNP [dm6]	A	C	3.274e^-4	0.896	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732	TF binding site mE1_TFBS_sens
3L	5257383	3L_5257383_SNP [dm3] 3L_5264283_SNP [dm6]	C	T	3.277e^-4	0.896	INTRON shep
3L	16308320	3L_16308320_SNP [dm3] 3L_16315220_SNP [dm6]	A	T	3.295e^-4	0.896	DOWNSTREAM CG13062 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3896492	X_3896492_SNP [dm3] X_4002459_SNP [dm6]	A	C	3.297e^-4	0.896	UPSTREAM CR43298 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12157330	2L_12157330_SNP [dm3] 2L_12157330_SNP [dm6]	T	C	3.297e^-4	0.896	INTRON CG31760
2L	12275542	2L_12275542_SNP [dm3] 2L_12275542_SNP [dm6]	T	A	3.297e^-4	0.896	INTRON aret
2L	12667658	2L_12667658_SNP [dm3] 2L_12667658_SNP [dm6]	T	A	3.297e^-4	0.896	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_twi
2L	13259420	2L_13259420_SNP [dm3] 2L_13259420_SNP [dm6]	A	G	3.297e^-4	0.896	SYNONYMOUS_CODING CG31730 DOWNSTREAM CG31851
2L	1863789	2L_1863789_SNP [dm3] 2L_1863789_SNP [dm6]	G	C	3.297e^-4	0.896	INTRON CG31663
2L	1864170	2L_1864170_SNP [dm3] 2L_1864170_SNP [dm6]	G	A	3.297e^-4	0.896	INTRON CG31663
2L	1864792	2L_1864792_SNP [dm3] 2L_1864792_SNP [dm6]	G	A	3.297e^-4	0.896	INTRON CG31663
2L	2690611	2L_2690611_SNP [dm3] 2L_2690611_SNP [dm6]	C	T	3.297e^-4	0.896	INTRON CG31690
2L	3891910	2L_3891910_SNP [dm3] 2L_3891910_SNP [dm6]	C	T	3.297e^-4	0.896	INTRON capu
2L	4088569	2L_4088569_SNP [dm3] 2L_4088569_SNP [dm6]	C	A	3.297e^-4	0.896	INTRON ed
2L	6963835	2L_6963835_SNP [dm3] 2L_6963835_SNP [dm6]	G	C	3.297e^-4	0.896	UTR_5_PRIME sip2 UPSTREAM Coprox & 1 other INTRON sip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6963914	2L_6963914_SNP [dm3] 2L_6963914_SNP [dm6]	G	A	3.297e^-4	0.896	UPSTREAM Coprox & 1 other INTRON sip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8323933	2L_8323933_SNP [dm3] 2L_8323933_SNP [dm6]	A	G	3.297e^-4	0.896	INTRON CG7781
2R	10983513	2R_10983513_SNP [dm3] 2R_15096008_SNP [dm6]	C	T	3.297e^-4	0.896	INTERGENIC
2R	11699878	2R_11699878_SNP [dm3] 2R_15812373_SNP [dm6]	A	T	3.297e^-4	0.896	INTRON tun & 1 other
2R	16715646	2R_16715646_SNP [dm3] 2R_20828141_SNP [dm6]	G	C	3.297e^-4	0.896	NON_SYNONYMOUS_CODING sktl INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4708910	2R_4708910_SNP [dm3] 2R_8821405_SNP [dm6]	A	G	3.297e^-4	0.896	INTRON sns
2R	6179522	2R_6179522_SNP [dm3] 2R_10292017_SNP [dm6]	T	C	3.297e^-4	0.896	INTRON CAP
2R	6792786	2R_6792786_SNP [dm3] 2R_10905281_SNP [dm6]	A	G	3.297e^-4	0.896	SYNONYMOUS_CODING CG12943 UTR_3_PRIME CG12943
2R	7553444	2R_7553444_SNP [dm3] 2R_11665939_SNP [dm6]	G	A	3.297e^-4	0.896	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7554353	2R_7554353_SNP [dm3] 2R_11666848_SNP [dm6]	G	C	3.297e^-4	0.896	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7554669	2R_7554669_SNP [dm3] 2R_11667164_SNP [dm6]	T	G	3.297e^-4	0.896	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
2R	7554707	2R_7554707_SNP [dm3] 2R_11667202_SNP [dm6]	C	G	3.297e^-4	0.896	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7556075	2R_7556075_SNP [dm3] 2R_11668570_SNP [dm6]	G	A	3.297e^-4	0.896	UTR_5_PRIME Tret1-1 INTRON Roc2
2R	9374855	2R_9374855_SNP [dm3] 2R_13487350_SNP [dm6]	C	T	3.297e^-4	0.896	UTR_3_PRIME bbc DOWNSTREAM cid	TF binding site mE1_TFBS_cad
3L	10997038	3L_10997038_SNP [dm3] 3L_11003938_SNP [dm6]	T	A	3.297e^-4	0.896	INTRON klu
3L	14635278	3L_14635278_SNP [dm3] 3L_14642178_SNP [dm6]	T	G	3.297e^-4	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14635612	3L_14635612_SNP [dm3] 3L_14642512_SNP [dm6]	T	G	3.297e^-4	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14761992	3L_14761992_SNP [dm3] 3L_14768892_SNP [dm6]	A	G	3.297e^-4	0.896	SYNONYMOUS_CODING CG17173 DOWNSTREAM mop	TF binding site mE1_TFBS_sens
3L	14983382	3L_14983382_SNP [dm3] 3L_14990282_SNP [dm6]	G	A	3.297e^-4	0.896	SYNONYMOUS_CODING mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	2130457	3L_2130457_SNP [dm3] 3L_2130457_SNP [dm6]	T	A	3.297e^-4	0.896	INTRON zormin
3L	2138090	3L_2138090_SNP [dm3] 3L_2138090_SNP [dm6]	A	G	3.297e^-4	0.896	SPLICE_SITE_REGION zormin INTRON zormin	TF binding site mE1_TFBS_cad
3L	2138095	3L_2138095_SNP [dm3] 3L_2138095_SNP [dm6]	A	G	3.297e^-4	0.896	INTRON zormin	TF binding site mE1_TFBS_cad
3L	2138096	3L_2138096_SNP [dm3] 3L_2138096_SNP [dm6]	T	A	3.297e^-4	0.896	INTRON zormin	TF binding site mE1_TFBS_cad
3L	2138120	3L_2138120_SNP [dm3] 3L_2138120_SNP [dm6]	A	G	3.297e^-4	0.896	INTRON zormin	TF binding site mE1_TFBS_cad
3L	3986277	3L_3986277_SNP [dm3] 3L_3986277_SNP [dm6]	G	A	3.297e^-4	0.896	INTRON scrt
3L	544402	3L_544402_SNP [dm3] 3L_544402_SNP [dm6]	T	G	3.297e^-4	0.896	INTRON hipk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	7872992	3L_7872992_SNP [dm3] 3L_7879892_SNP [dm6]	C	A	3.297e^-4	0.896	INTRON CG32365	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7882323	3L_7882323_SNP [dm3] 3L_7889223_SNP [dm6]	A	T	3.297e^-4	0.896	INTRON CG32365
3L	9024226	3L_9024226_SNP [dm3] 3L_9031126_SNP [dm6]	A	G	3.297e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	10665117	3R_10665117_SNP [dm3] 3R_14839395_SNP [dm6]	T	G	3.297e^-4	0.896	INTRON btsz
3R	10936897	3R_10936897_SNP [dm3] 3R_15111175_SNP [dm6]	G	T	3.297e^-4	0.896	INTRON CG42788
X	12759038	X_12759038_SNP [dm3] X_12865005_SNP [dm6]	C	G	3.297e^-4	0.896	INTRON Pde9
X	17211053	X_17211053_SNP [dm3] X_17317020_SNP [dm6]	T	C	3.297e^-4	0.896	INTRON B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19295807	X_19295807_SNP [dm3] X_19401774_SNP [dm6]	A	G	3.297e^-4	0.896	INTRON kek5
X	2896493	X_2896493_SNP [dm3] X_3002460_SNP [dm6]	T	A	3.297e^-4	0.896	INTRON kirre
X	3438568	X_3438568_SNP [dm3] X_3544535_SNP [dm6]	G	T	3.297e^-4	0.896	INTRON CG32791
X	4425608	X_4425608_SNP [dm3] X_4531575_SNP [dm6]	C	T	3.297e^-4	0.896	NON_SYNONYMOUS_CODING CG3556 INTRON CR32773
X	4425747	X_4425747_SNP [dm3] X_4531714_SNP [dm6]	C	T	3.297e^-4	0.896	SYNONYMOUS_CODING CG3556 INTRON CR32773
X	4757718	X_4757718_SNP [dm3] X_4863685_SNP [dm6]	A	C	3.297e^-4	0.896	INTRON CG42594
X	8422162	X_8422162_SNP [dm3] X_8528129_SNP [dm6]	G	A	3.297e^-4	0.896	SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	8422166	X_8422166_SNP [dm3] X_8528133_SNP [dm6]	T	G	3.297e^-4	0.896	NON_SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	8422168	X_8422168_SNP [dm3] X_8528135_SNP [dm6]	T	G	3.297e^-4	0.896	SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	20177338	2R_20177338_SNP [dm3] 2R_24289815_SNP [dm6]	C	T	3.312e^-4	0.896	INTRON nvy	TF binding site mE1_TFBS_chinmo
X	20554724	X_20554724_SNP [dm3] X_20683697_SNP [dm6]	G	A	3.320e^-4	0.896	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
X	20554810	X_20554810_SNP [dm3] X_20683783_SNP [dm6]	G	A	3.320e^-4	0.896	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
X	20554931	X_20554931_DEL [dm3] X_20683904_DEL [dm6]	CTTAGA	T	3.320e^-4	0.896	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	4462986	2L_4462986_SNP [dm3] 2L_4462986_SNP [dm6]	T	A	3.324e^-4	0.896	UTR_5_PRIME CG15443 UPSTREAM CG15436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1720848	2L_1720848_SNP [dm3] 2L_1720848_SNP [dm6]	A	C	3.334e^-4	0.896	INTRON Rim2
2R	16460292	2R_16460292_SNP [dm3] 2R_20572787_SNP [dm6]	T	A	3.346e^-4	0.896	INTRON qsm
2R	18204903	2R_18204903_SNP [dm3] 2R_22317398_SNP [dm6]	T	C	3.348e^-4	0.896	UPSTREAM Gp150 DOWNSTREAM CR44758 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	20738821	2R_20738821_DEL [dm3] 2R_24851298_DEL [dm6]	GGGGCAGGTG	G	3.353e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	17610150	2L_17610150_SNP [dm3] 2L_17610150_SNP [dm6]	T	C	3.363e^-4	0.896	INTERGENIC
X	4617981	X_4617981_DEL [dm3] X_4723948_DEL [dm6]	TAATTT	T	3.366e^-4	0.896	INTRON Proc-R
3L	4345465	3L_4345465_SNP [dm3] 3L_4345465_SNP [dm6]	T	A	3.367e^-4	0.896	SYNONYMOUS_CODING Cip4 UPSTREAM CR45156 INTRON Cip4
3L	7134608	3L_7134608_SNP [dm3] 3L_7141508_SNP [dm6]	T	C	3.392e^-4	0.896	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10872237	2L_10872237_SNP [dm3] 2L_10872237_SNP [dm6]	C	T	3.395e^-4	0.896	EXON CR45454
3L	9810209	3L_9810209_SNP [dm3] 3L_9817109_SNP [dm6]	T	C	3.395e^-4	0.896	INTRON CG43897
X	5078432	X_5078432_SNP [dm3] X_5184399_SNP [dm6]	T	C	3.400e^-4	0.896	INTRON rg & 1 other
3L	8538421	3L_8538421_SNP [dm3] 3L_8545321_SNP [dm6]	T	A	3.400e^-4	0.896	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5031092	X_5031092_SNP [dm3] X_5137059_SNP [dm6]	G	A	3.401e^-4	0.896	INTRON rg & 1 other
3R	4956857	3R_4956857_SNP [dm3] 3R_9131135_SNP [dm6]	A	C	3.405e^-4	0.896	INTRON pum
3L	3897940	3L_3897940_SNP [dm3] 3L_3897940_SNP [dm6]	G	C	3.411e^-4	0.896	NON_SYNONYMOUS_CODING Ccz1 SPLICE_SITE_REGION Ccz1 DOWNSTREAM CG14977	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	11847821	2L_11847821_SNP [dm3] 2L_11847821_SNP [dm6]	T	C	3.412e^-4	0.896	SYNONYMOUS_CODING Mal-B1 INTRON Pde1c
2L	228842	2L_228842_SNP [dm3] 2L_228842_SNP [dm6]	A	C	3.412e^-4	0.896	DOWNSTREAM CR44221 INTRON kis
2R	5297595	2R_5297595_SNP [dm3] 2R_9410090_SNP [dm6]	G	A	3.412e^-4	0.896	UPSTREAM wun INTRON wun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18944134	2R_18944134_SNP [dm3] 2R_23056611_SNP [dm6]	C	A	3.418e^-4	0.896	INTRON CG44252
2R	5673831	2R_5673831_SNP [dm3] 2R_9786326_SNP [dm6]	G	A	3.448e^-4	0.896	INTRON CG1688	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13302804	2R_13302804_SNP [dm3] 2R_17415299_SNP [dm6]	G	A	3.459e^-4	0.896	SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo
3L	7283383	3L_7283383_SNP [dm3] 3L_7290283_SNP [dm6]	A	G	3.463e^-4	0.896	INTRON unc-13-4A
3L	17220227	3L_17220227_SNP [dm3] 3L_17227127_SNP [dm6]	G	A	3.464e^-4	0.896	INTRON Rbp6
2R	20732930	2R_20732930_SNP [dm3] 2R_24845407_SNP [dm6]	T	G	3.469e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	6735408	2R_6735408_SNP [dm3] 2R_10847903_SNP [dm6]	T	A	3.470e^-4	0.896	INTRON CG30015
3R	525823	3R_525823_SNP [dm3] 3R_4700101_SNP [dm6]	T	C	3.473e^-4	0.896	INTRON CG43427
3L	5257471	3L_5257471_SNP [dm3] 3L_5264371_SNP [dm6]	T	C	3.477e^-4	0.896	INTRON shep
2L	881544	2L_881544_SNP [dm3] 2L_881544_SNP [dm6]	G	A	3.502e^-4	0.896	SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
2R	4406422	2R_4406422_SNP [dm3] 2R_8518917_SNP [dm6]	C	A	3.511e^-4	0.896	INTRON mtt
2R	14674082	2R_14674082_SNP [dm3] 2R_18786577_SNP [dm6]	T	C	3.518e^-4	0.896	INTRON CG15080	enhancer mE1_CBP_Enhancers
2R	14506213	2R_14506213_SNP [dm3] 2R_18618708_SNP [dm6]	T	G	3.518e^-4	0.896	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10989716	3L_10989716_SNP [dm3] 3L_10996616_SNP [dm6]	T	G	3.523e^-4	0.896	INTRON klu	TF binding site BDTNP1_TFBS_da
2L	13538082	2L_13538082_SNP [dm3] 2L_13538082_SNP [dm6]	A	C	3.527e^-4	0.896	INTRON B4
3R	18620539	3R_18620539_SNP [dm3] 3R_22794817_SNP [dm6]	C	A	3.530e^-4	0.896	DOWNSTREAM CG7029 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18693959	2R_18693959_SNP [dm3] 2R_22806454_SNP [dm6]	G	A	3.534e^-4	0.896	START_GAINED CycB UTR_5_PRIME CycB UPSTREAM CycB INTRON CycB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19346539	X_19346539_SNP [dm3] X_19452506_SNP [dm6]	A	C	3.537e^-4	0.896	INTRON kek5	TF binding site mE1_TFBS_chinmo
2R	4406420	2R_4406420_SNP [dm3] 2R_8518915_SNP [dm6]	C	A	3.540e^-4	0.896	INTRON mtt
3R	5407922	3R_5407922_SNP [dm3] 3R_9582200_SNP [dm6]	G	C	3.544e^-4	0.896	DOWNSTREAM CG8273 & 1 other INTRON CG8301
2L	4072384	2L_4072384_SNP [dm3] 2L_4072384_SNP [dm6]	G	T	3.556e^-4	0.896	INTRON ed
2R	7526404	2R_7526404_SNP [dm3] 2R_11638899_SNP [dm6]	A	G	3.556e^-4	0.896	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1129802	3L_1129802_SNP [dm3] 3L_1129802_SNP [dm6]	A	G	3.563e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
X	12904333	X_12904333_SNP [dm3] X_13010300_SNP [dm6]	G	A	3.564e^-4	0.896	INTRON rad
3R	18620566	3R_18620566_SNP [dm3] 3R_22794844_SNP [dm6]	T	C	3.601e^-4	0.896	DOWNSTREAM CG7029 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7526403	2R_7526403_SNP [dm3] 2R_11638898_SNP [dm6]	A	T	3.609e^-4	0.896	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6295858	2R_6295858_SNP [dm3] 2R_10408353_SNP [dm6]	C	A	3.613e^-4	0.896	UPSTREAM CG12898 DOWNSTREAM CG43177 & 1 other INTRON CG42732
2R	12476708	2R_12476708_SNP [dm3] 2R_16589203_SNP [dm6]	T	G	3.619e^-4	0.896	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24721740	3R_24721740_SNP [dm3] 3R_28896018_SNP [dm6]	T	C	3.620e^-4	0.896	INTRON Doa
2L	1732417	2L_1732417_SNP [dm3] 2L_1732417_SNP [dm6]	T	C	3.623e^-4	0.896	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14512669	3L_14512669_SNP [dm3] 3L_14519569_SNP [dm6]	A	T	3.639e^-4	0.896	DOWNSTREAM CG4613 INTRON bbg
2R	9493639	2R_9493639_SNP [dm3] 2R_13606134_SNP [dm6]	A	T	3.647e^-4	0.896	UPSTREAM CG34236 INTERGENIC
2L	6006434	2L_6006434_SNP [dm3] 2L_6006434_SNP [dm6]	C	T	3.649e^-4	0.896	DOWNSTREAM CR43866 & 1 other INTRON Gal	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6327841	2R_6327841_SNP [dm3] 2R_10440336_SNP [dm6]	C	T	3.655e^-4	0.896	INTRON Galphao	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14512765	3L_14512765_SNP [dm3] 3L_14519665_SNP [dm6]	G	A	3.663e^-4	0.896	DOWNSTREAM CG4613 INTRON bbg
3L	14512784	3L_14512784_SNP [dm3] 3L_14519684_SNP [dm6]	G	A	3.663e^-4	0.896	DOWNSTREAM CG4613 INTRON bbg
2R	10018638	2R_10018638_DEL [dm3] 2R_14131133_DEL [dm6]	AA	A	3.677e^-4	0.896	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4244492	X_4244492_DEL [dm3] X_4350459_DEL [dm6]	TAT	T	3.696e^-4	0.896	INTRON norpA
2L	13472110	2L_13472110_SNP [dm3] 2L_13472110_SNP [dm6]	C	T	3.708e^-4	0.896	INTRON CG42784
2R	20189805	2R_20189805_SNP [dm3] 2R_24302282_SNP [dm6]	A	T	3.714e^-4	0.896	INTERGENIC
3R	19213272	3R_19213272_SNP [dm3] 3R_23387550_SNP [dm6]	T	A	3.728e^-4	0.896	DOWNSTREAM CG31515 INTERGENIC
X	18622289	X_18622289_SNP [dm3] X_18728256_SNP [dm6]	T	A	3.739e^-4	0.896	INTERGENIC
2L	1630411	2L_1630411_SNP [dm3] 2L_1630411_SNP [dm6]	A	T	3.744e^-4	0.896	INTERGENIC
2R	6591636	2R_6591636_SNP [dm3] 2R_10704131_SNP [dm6]	C	T	3.759e^-4	0.896	INTRON stan
3L	9968658	3L_9968658_SNP [dm3] 3L_9975558_SNP [dm6]	G	A	3.762e^-4	0.896	UTR_5_PRIME dpr6
2L	16292508	2L_16292508_SNP [dm3] 2L_16292508_SNP [dm6]	C	T	3.766e^-4	0.896	SYNONYMOUS_CODING CG13258 DOWNSTREAM CG17329 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14496686	2L_14496686_SNP [dm3] 2L_14496686_SNP [dm6]	C	A	3.768e^-4	0.896	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
2L	14496688	2L_14496688_SNP [dm3] 2L_14496688_SNP [dm6]	C	T	3.768e^-4	0.896	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
3R	24703456	3R_24703456_SNP [dm3] 3R_28877734_SNP [dm6]	T	C	3.769e^-4	0.896	UTR_3_PRIME CG14528 DOWNSTREAM CG14523 INTRON CG33203	TF binding site mE1_TFBS_chinmo
2L	12197953	2L_12197953_SNP [dm3] 2L_12197953_SNP [dm6]	A	G	3.770e^-4	0.896	INTRON aret
2R	6179360	2R_6179360_SNP [dm3] 2R_10291855_SNP [dm6]	G	A	3.772e^-4	0.896	INTRON CAP
X	12145053	X_12145053_SNP [dm3] X_12251020_SNP [dm6]	T	C	3.775e^-4	0.896	INTRON Ten-a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1731342	2L_1731342_SNP [dm3] 2L_1731342_SNP [dm6]	G	T	3.776e^-4	0.896	UTR_3_PRIME CG17652 DOWNSTREAM CG17652 & 1 other
2L	1939181	2L_1939181_SNP [dm3] 2L_1939181_SNP [dm6]	A	G	3.782e^-4	0.896	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	7745069	X_7745069_DEL [dm3] X_7851036_DEL [dm6]	CAAC	C	3.783e^-4	0.896	INTERGENIC
3L	4698871	3L_4698871_DEL [dm3] 3L_4698871_DEL [dm6]	TCCGAGTTT	T	3.791e^-4	0.896	DOWNSTREAM CG13713 INTRON RhoGEF64C
3L	17769988	3L_17769988_SNP [dm3] 3L_17776888_SNP [dm6]	C	T	3.814e^-4	0.896	INTERGENIC
2R	17122830	2R_17122830_SNP [dm3] 2R_21235325_SNP [dm6]	C	A	3.823e^-4	0.896	INTRON ASPP
2R	19617783	2R_19617783_SNP [dm3] 2R_23730260_SNP [dm6]	G	T	3.823e^-4	0.896	INTRON Sesn
2R	6959640	2R_6959640_SNP [dm3] 2R_11072135_SNP [dm6]	G	C	3.823e^-4	0.896	INTRON luna	TF binding site BDTNP1_TFBS_prd
3L	2744829	3L_2744829_SNP [dm3] 3L_2744829_SNP [dm6]	C	G	3.823e^-4	0.896	INTRON Mrtf
3R	26497570	3R_26497570_SNP [dm3] 3R_30671848_SNP [dm6]	A	G	3.826e^-4	0.896	INTERGENIC
2L	4203051	2L_4203051_SNP [dm3] 2L_4203051_SNP [dm6]	G	T	3.828e^-4	0.896	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	7050490	2R_7050490_DEL [dm3] 2R_11162985_DEL [dm6]	TACCTCCTCT	T	3.833e^-4	0.896	INTRON shn & 1 other
2L	836635	2L_836635_SNP [dm3] 2L_836635_SNP [dm6]	A	T	3.834e^-4	0.896	NON_SYNONYMOUS_CODING drongo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1482941	3L_1482941_SNP [dm3] 3L_1482941_SNP [dm6]	G	A	3.850e^-4	0.896	INTRON stet	TF binding site mE1_TFBS_cad
3R	9327803	3R_9327803_SNP [dm3] 3R_13502081_SNP [dm6]	T	A	3.853e^-4	0.896	INTERGENIC
2L	2745412	2L_2745412_SNP [dm3] 2L_2745412_SNP [dm6]	A	G	3.858e^-4	0.896	SYNONYMOUS_CODING Cwc25 UPSTREAM CG9961	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2739715	2L_2739715_SNP [dm3] 2L_2739715_SNP [dm6]	T	A	3.866e^-4	0.896	UTR_3_PRIME CG31689 UPSTREAM Hrs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2739903	2L_2739903_SNP [dm3] 2L_2739903_SNP [dm6]	A	G	3.866e^-4	0.896	UPSTREAM Hrs DOWNSTREAM CG31689 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2739905	2L_2739905_SNP [dm3] 2L_2739905_SNP [dm6]	A	C	3.866e^-4	0.896	UPSTREAM Hrs DOWNSTREAM CG31689 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2739916	2L_2739916_SNP [dm3] 2L_2739916_SNP [dm6]	C	A	3.866e^-4	0.896	UPSTREAM Hrs DOWNSTREAM CG31689 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3891637	2L_3891637_INS [dm3] 2L_3891637_INS [dm6]	T	TAT	3.867e^-4	0.896	INTRON capu
2L	3891653	2L_3891653_SNP [dm3] 2L_3891653_SNP [dm6]	A	T	3.867e^-4	0.896	INTRON capu
2R	12418321	2R_12418321_SNP [dm3] 2R_16530816_SNP [dm6]	C	T	3.867e^-4	0.896	SYNONYMOUS_CODING Sema-2a	TF binding site BDTNP1_TFBS_twi
3L	14635793	3L_14635793_SNP [dm3] 3L_14642693_SNP [dm6]	T	C	3.867e^-4	0.896	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25441223	3R_25441223_SNP [dm3] 3R_29615501_SNP [dm6]	T	A	3.867e^-4	0.896	INTRON alph
3R	25443997	3R_25443997_SNP [dm3] 3R_29618275_SNP [dm6]	C	T	3.867e^-4	0.896	UPSTREAM CG1907 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	5096286	X_5096286_SNP [dm3] X_5202253_SNP [dm6]	C	A	3.867e^-4	0.896	INTRON rg & 1 other
X	6300268	X_6300268_SNP [dm3] X_6406235_SNP [dm6]	G	A	3.867e^-4	0.896	INTERGENIC
3L	11667269	3L_11667269_SNP [dm3] 3L_11674169_SNP [dm6]	G	A	3.868e^-4	0.896	INTRON CG32085	TF binding site mE1_TFBS_cad
2L	9170471	2L_9170471_SNP [dm3] 2L_9170471_SNP [dm6]	C	G	3.873e^-4	0.896	INTRON tai
3R	6203118	3R_6203118_SNP [dm3] 3R_10377396_SNP [dm6]	G	C	3.876e^-4	0.896	INTRON Rfx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7598367	2L_7598367_SNP [dm3] 2L_7598367_SNP [dm6]	A	T	3.877e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_cad
2L	7598623	2L_7598623_SNP [dm3] 2L_7598623_SNP [dm6]	A	G	3.877e^-4	0.896	INTERGENIC
2L	6704709	2L_6704709_SNP [dm3] 2L_6704709_SNP [dm6]	G	T	3.888e^-4	0.896	INTRON Tsp	TF binding site mE1_TFBS_hkb
2L	13592392	2L_13592392_SNP [dm3] 2L_13592392_SNP [dm6]	G	T	3.893e^-4	0.896	INTRON kuz
X	15414738	X_15414738_SNP [dm3] X_15520705_SNP [dm6]	A	G	3.901e^-4	0.896	INTRON Ac13E
3L	11181520	3L_11181520_SNP [dm3] 3L_11188420_SNP [dm6]	T	A	3.901e^-4	0.896	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	11181526	3L_11181526_SNP [dm3] 3L_11188426_SNP [dm6]	G	C	3.901e^-4	0.896	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	11181529	3L_11181529_SNP [dm3] 3L_11188429_SNP [dm6]	C	T	3.901e^-4	0.896	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	6518187	X_6518187_SNP [dm3] X_6624154_SNP [dm6]	A	T	3.901e^-4	0.896	INTRON pigs	TF binding site BDTNP1_TFBS_dl
2L	1863770	2L_1863770_SNP [dm3] 2L_1863770_SNP [dm6]	G	A	3.905e^-4	0.896	INTRON CG31663
3L	2736447	3L_2736447_SNP [dm3] 3L_2736447_SNP [dm6]	G	T	3.905e^-4	0.896	INTRON Mrtf
3R	9753699	3R_9753699_SNP [dm3] 3R_13927977_SNP [dm6]	T	C	3.908e^-4	0.896	INTERGENIC
3R	399143	3R_399143_SNP [dm3] 3R_4573421_SNP [dm6]	G	T	3.916e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4539869	3L_4539869_SNP [dm3] 3L_4539869_SNP [dm6]	T	G	3.919e^-4	0.896	NON_SYNONYMOUS_CODING CG32243 DOWNSTREAM CG11353
3L	8436014	3L_8436014_SNP [dm3] 3L_8442914_SNP [dm6]	C	T	3.919e^-4	0.896	UPSTREAM Unr DOWNSTREAM CG6983 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13831858	2R_13831858_SNP [dm3] 2R_17944353_SNP [dm6]	A	G	3.943e^-4	0.896	INTERGENIC
2R	15204511	2R_15204511_SNP [dm3] 2R_19317006_SNP [dm6]	A	T	3.946e^-4	0.896	INTRON Rgk1
2R	15205536	2R_15205536_SNP [dm3] 2R_19318031_SNP [dm6]	A	T	3.946e^-4	0.896	INTRON Rgk1
2R	15205537	2R_15205537_SNP [dm3] 2R_19318032_SNP [dm6]	A	T	3.946e^-4	0.896	INTRON Rgk1
2R	20177645	2R_20177645_SNP [dm3] 2R_24290122_SNP [dm6]	G	C	3.951e^-4	0.896	NON_SYNONYMOUS_CODING nvy	TF binding site mE1_TFBS_chinmo
2L	1950507	2L_1950507_SNP [dm3] 2L_1950507_SNP [dm6]	G	T	3.965e^-4	0.896	UTR_3_PRIME erm
3R	24610548	3R_24610548_SNP [dm3] 3R_28784826_SNP [dm6]	G	T	3.974e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21994383	3R_21994383_SNP [dm3] 3R_26168661_SNP [dm6]	C	A	3.978e^-4	0.896	INTERGENIC
2R	14856863	2R_14856863_SNP [dm3] 2R_18969358_SNP [dm6]	A	T	3.984e^-4	0.896	DOWNSTREAM prod INTERGENIC
2R	7549620	2R_7549620_SNP [dm3] 2R_11662115_SNP [dm6]	T	G	3.984e^-4	0.896	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14827134	2R_14827134_SNP [dm3] 2R_18939629_SNP [dm6]	A	G	3.995e^-4	0.896	INTRON sano
2R	4406161	2R_4406161_DEL [dm3] 2R_8518656_DEL [dm6]	GGCCT	G	3.998e^-4	0.896	INTRON mtt
2R	4406168	2R_4406168_DEL [dm3] 2R_8518663_DEL [dm6]	CAGCAAAAGGCCGT...	A	3.998e^-4	0.896	INTRON mtt
2R	4406198	2R_4406198_SNP [dm3] 2R_8518693_SNP [dm6]	T	A	3.998e^-4	0.896	INTRON mtt
3L	4206458	3L_4206458_SNP [dm3] 3L_4206458_SNP [dm6]	G	A	3.998e^-4	0.896	INTRON CG43367
3L	4206478	3L_4206478_SNP [dm3] 3L_4206478_SNP [dm6]	C	T	3.998e^-4	0.896	INTRON CG43367
3L	18624189	3L_18624189_SNP [dm3] 3L_18631089_SNP [dm6]	G	T	4.018e^-4	0.896	INTRON MYPT-75D	TF binding site mE1_TFBS_HSA
X	22224164	X_22224164_INS [dm3] X_22822328_INS [dm6]	A	AA	4.019e^-4	0.896	INTERGENIC	transposable element FlyBase
2L	8326687	2L_8326687_DEL [dm3] 2L_8326687_DEL [dm6]	CACAC	C	4.022e^-4	0.896	UPSTREAM CG14275 INTERGENIC
2L	8326700	2L_8326700_SNP [dm3] 2L_8326700_SNP [dm6]	T	G	4.022e^-4	0.896	UPSTREAM CG14275 INTERGENIC
2R	14418739	2R_14418739_SNP [dm3] 2R_18531234_SNP [dm6]	T	C	4.022e^-4	0.896	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	12711828	X_12711828_SNP [dm3] X_12817795_SNP [dm6]	C	G	4.022e^-4	0.896	INTRON Pde9
X	4910752	X_4910752_SNP [dm3] X_5016719_SNP [dm6]	T	C	4.036e^-4	0.896	INTRON CR44833
3R	20293534	3R_20293534_SNP [dm3] 3R_24467812_SNP [dm6]	C	G	4.037e^-4	0.896	INTERGENIC
3R	26959718	3R_26959718_SNP [dm3] 3R_31133996_SNP [dm6]	A	C	4.040e^-4	0.896	UPSTREAM Gycbeta100B DOWNSTREAM CR43458 INTERGENIC
3L	20387767	3L_20387767_SNP [dm3] 3L_20394667_SNP [dm6]	C	G	4.053e^-4	0.896	DOWNSTREAM CR45677 INTERGENIC	TF binding site mE1_TFBS_sens
3L	20387795	3L_20387795_DEL [dm3] 3L_20394695_DEL [dm6]	TCGCATT	T	4.053e^-4	0.896	DOWNSTREAM CR45677 INTERGENIC	TF binding site mE1_TFBS_sens
2L	7775191	2L_7775191_SNP [dm3] 2L_7775191_SNP [dm6]	C	T	4.054e^-4	0.896	DOWNSTREAM CG7179 & 1 other INTERGENIC
2L	8324022	2L_8324022_SNP [dm3] 2L_8324022_SNP [dm6]	A	T	4.054e^-4	0.896	INTRON CG7781
2L	13831035	2L_13831035_SNP [dm3] 2L_13831035_SNP [dm6]	C	T	4.058e^-4	0.896	SYNONYMOUS_CODING Orc5 DOWNSTREAM CG33649 & 1 other
2R	19003202	2R_19003202_SNP [dm3] 2R_23115679_SNP [dm6]	G	A	4.061e^-4	0.896	INTERGENIC
2L	4048815	2L_4048815_MNP [dm3] 2L_4048815_MNP [dm6]	TTA	CAC	4.065e^-4	0.896	INTRON ed
2L	4048819	2L_4048819_INS [dm3] 2L_4048819_INS [dm6]	T	TGCAT	4.065e^-4	0.896	INTRON ed
3L	18139145	3L_18139145_SNP [dm3] 3L_18146045_SNP [dm6]	G	A	4.065e^-4	0.896	DOWNSTREAM gk INTERGENIC
3L	3046955	3L_3046955_SNP [dm3] 3L_3046955_SNP [dm6]	T	A	4.066e^-4	0.896	UPSTREAM Sk2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	26934999	3R_26934999_INS [dm3] 3R_31109277_INS [dm6]	G	GG	4.073e^-4	0.896	UPSTREAM CG11318 INTERGENIC
X	18306041	X_18306041_SNP [dm3] X_18412008_SNP [dm6]	C	T	4.076e^-4	0.896	INTERGENIC
3L	9750795	3L_9750795_SNP [dm3] 3L_9757695_SNP [dm6]	T	C	4.078e^-4	0.896	INTRON CG42268
2R	19363404	2R_19363404_SNP [dm3] 2R_23475881_SNP [dm6]	A	G	4.081e^-4	0.896	SYNONYMOUS_CODING CG13557 UPSTREAM CR43792 INTRON CG43795
2L	579478	2L_579478_SNP [dm3] 2L_579478_SNP [dm6]	T	C	4.082e^-4	0.896	UTR_3_PRIME Pph13
3L	7102105	3L_7102105_SNP [dm3] 3L_7109005_SNP [dm6]	C	G	4.087e^-4	0.896	INTRON form3
2L	20362255	2L_20362255_SNP [dm3] 2L_20362255_SNP [dm6]	C	A	4.088e^-4	0.896	SYNONYMOUS_CODING RtGEF DOWNSTREAM RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad
3L	855707	3L_855707_SNP [dm3] 3L_855707_SNP [dm6]	G	A	4.088e^-4	0.896	INTRON dpr20
2R	14502550	2R_14502550_SNP [dm3] 2R_18615045_SNP [dm6]	A	T	4.096e^-4	0.896	UPSTREAM CG5323 & 2 others DOWNSTREAM CG10927 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	13798773	2L_13798773_SNP [dm3] 2L_13798773_SNP [dm6]	C	T	4.101e^-4	0.896	SYNONYMOUS_CODING Sec71	TF binding site mE1_TFBS_cad
2L	13803902	2L_13803902_SNP [dm3] 2L_13803902_SNP [dm6]	A	G	4.101e^-4	0.896	START_GAINED CAH1 UTR_5_PRIME CAH1
2L	13804867	2L_13804867_SNP [dm3] 2L_13804867_SNP [dm6]	C	T	4.101e^-4	0.896	INTRON CAH1
2R	12125326	2R_12125326_SNP [dm3] 2R_16237821_SNP [dm6]	A	C	4.101e^-4	0.896	DOWNSTREAM krimp & 1 other INTERGENIC
3L	4631400	3L_4631400_SNP [dm3] 3L_4631400_SNP [dm6]	A	T	4.101e^-4	0.896	INTRON axo
X	15414849	X_15414849_SNP [dm3] X_15520816_SNP [dm6]	A	G	4.101e^-4	0.896	INTRON Ac13E
X	15414857	X_15414857_SNP [dm3] X_15520824_SNP [dm6]	T	C	4.101e^-4	0.896	INTRON Ac13E
X	7658080	X_7658080_SNP [dm3] X_7764047_SNP [dm6]	A	T	4.101e^-4	0.896	UPSTREAM Ir7a INTERGENIC
X	7658091	X_7658091_SNP [dm3] X_7764058_SNP [dm6]	C	T	4.101e^-4	0.896	UPSTREAM Ir7a INTERGENIC
X	7658185	X_7658185_SNP [dm3] X_7764152_SNP [dm6]	G	C	4.101e^-4	0.896	UPSTREAM Ir7a INTERGENIC
2R	16410211	2R_16410211_SNP [dm3] 2R_20522706_SNP [dm6]	C	T	4.103e^-4	0.896	INTERGENIC
2R	16410222	2R_16410222_SNP [dm3] 2R_20522717_SNP [dm6]	T	A	4.103e^-4	0.896	INTERGENIC
3L	18139132	3L_18139132_SNP [dm3] 3L_18146032_SNP [dm6]	C	T	4.108e^-4	0.896	DOWNSTREAM gk INTERGENIC
3L	18139134	3L_18139134_SNP [dm3] 3L_18146034_SNP [dm6]	T	A	4.108e^-4	0.896	DOWNSTREAM gk INTERGENIC
3R	16433515	3R_16433515_SNP [dm3] 3R_20607793_SNP [dm6]	G	T	4.112e^-4	0.896	INTRON bon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8343223	X_8343223_SNP [dm3] X_8449190_SNP [dm6]	A	G	4.114e^-4	0.896	INTRON org-1	TF binding site mE1_TFBS_cad
3R	23378260	3R_23378260_SNP [dm3] 3R_27552538_SNP [dm6]	C	T	4.118e^-4	0.896	INTRON Klp98A	TF binding site mE1_TFBS_cad
2R	7554325	2R_7554325_INS [dm3] 2R_11666820_INS [dm6]	C	TCA	4.118e^-4	0.896	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	3982937	X_3982937_SNP [dm3] X_4088904_SNP [dm6]	A	G	4.118e^-4	0.896	INTRON CG43689	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7925037	3L_7925037_SNP [dm3] 3L_7931937_SNP [dm6]	A	G	4.141e^-4	0.896	INTRON syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18022653	2R_18022653_SNP [dm3] 2R_22135148_SNP [dm6]	T	C	4.147e^-4	0.896	INTERGENIC
2R	10206457	2R_10206457_SNP [dm3] 2R_14318952_SNP [dm6]	T	C	4.149e^-4	0.896	INTRON Shroom
3L	15000161	3L_15000161_SNP [dm3] 3L_15007061_SNP [dm6]	T	G	4.154e^-4	0.896	INTRON Reck
X	8469013	X_8469013_SNP [dm3] X_8574980_SNP [dm6]	A	C	4.157e^-4	0.896	INTRON CG12065	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	1863207	2L_1863207_SNP [dm3] 2L_1863207_SNP [dm6]	C	G	4.165e^-4	0.896	INTRON CG31663
2R	5669142	2R_5669142_SNP [dm3] 2R_9781637_SNP [dm6]	C	A	4.165e^-4	0.896	INTRON CG1688	TF binding site mE1_TFBS_inv
3R	5326748	3R_5326748_SNP [dm3] 3R_9501026_SNP [dm6]	G	T	4.168e^-4	0.896	INTRON RhoL	TF binding site mE1_TFBS_Trl
2L	2309084	2L_2309084_SNP [dm3] 2L_2309084_SNP [dm6]	G	A	4.169e^-4	0.896	SYNONYMOUS_CODING CG9967 DOWNSTREAM CG16995	TF binding site mE1_TFBS_chinmo
3L	16405963	3L_16405963_SNP [dm3] 3L_16412863_SNP [dm6]	A	C	4.172e^-4	0.896	NON_SYNONYMOUS_CODING TMS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	9802952	3L_9802952_INS [dm3] 3L_9809852_INS [dm6]	C	CACC	4.172e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4002264	2L_4002264_SNP [dm3] 2L_4002264_SNP [dm6]	T	A	4.175e^-4	0.896	DOWNSTREAM CR45344 INTERGENIC
2R	5498305	2R_5498305_SNP [dm3] 2R_9610800_SNP [dm6]	A	T	4.177e^-4	0.896	UPSTREAM CG12926 DOWNSTREAM Mmp2 INTRON CR44069	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10069486	2L_10069486_SNP [dm3] 2L_10069486_SNP [dm6]	C	G	4.198e^-4	0.896	NON_SYNONYMOUS_CODING CG44153	TF binding site BDTNP1_TFBS_sna
2R	17145338	2R_17145338_SNP [dm3] 2R_21257833_SNP [dm6]	G	A	4.205e^-4	0.896	UTR_5_PRIME Rgk3 INTRON Rgk3
X	15760333	X_15760333_SNP [dm3] X_15866300_SNP [dm6]	G	T	4.205e^-4	0.896	DOWNSTREAM Gbeta13F INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12476855	2R_12476855_SNP [dm3] 2R_16589350_SNP [dm6]	T	G	4.208e^-4	0.896	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	7934214	X_7934214_SNP [dm3] X_8040181_SNP [dm6]	T	A	4.212e^-4	0.896	UTR_3_PRIME fs_1_h
3L	10121667	3L_10121667_SNP [dm3] 3L_10128567_SNP [dm6]	A	T	4.220e^-4	0.896	INTRON dpr6
3L	9908607	3L_9908607_SNP [dm3] 3L_9915507_SNP [dm6]	A	T	4.224e^-4	0.896	INTRON CG34356
2L	7528819	2L_7528819_SNP [dm3] 2L_7528819_SNP [dm6]	T	G	4.228e^-4	0.896	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	15563743	X_15563743_SNP [dm3] X_15669710_SNP [dm6]	T	A	4.231e^-4	0.896	UTR_5_PRIME CG15646 INTRON CG15646	TF binding site BDTNP1_TFBS_dl
2R	12476923	2R_12476923_SNP [dm3] 2R_16589418_SNP [dm6]	A	C	4.238e^-4	0.896	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	4462938	2L_4462938_SNP [dm3] 2L_4462938_SNP [dm6]	A	G	4.246e^-4	0.896	NON_SYNONYMOUS_CODING CG15443 UPSTREAM CG15436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2855326	2L_2855326_SNP [dm3] 2L_2855326_SNP [dm6]	C	A	4.247e^-4	0.896	UPSTREAM RpS21 & 1 other INTRON CG3104	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	16978317	X_16978317_SNP [dm3] X_17084284_SNP [dm6]	A	G	4.248e^-4	0.896	SYNONYMOUS_CODING CG8945 DOWNSTREAM CG4955
2L	13924149	2L_13924149_SNP [dm3] 2L_13924149_SNP [dm6]	T	A	4.249e^-4	0.896	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8205469	3L_8205469_SNP [dm3] 3L_8212369_SNP [dm6]	T	G	4.268e^-4	0.896	NON_SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad
2R	20738765	2R_20738765_SNP [dm3] 2R_24851242_SNP [dm6]	T	A	4.271e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	1125765	3L_1125765_SNP [dm3] 3L_1125765_SNP [dm6]	A	G	4.275e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
X	6624662	X_6624662_SNP [dm3] X_6730629_SNP [dm6]	A	C	4.276e^-4	0.896	UPSTREAM CG3168 INTRON CG3168
2L	4220478	2L_4220478_SNP [dm3] 2L_4220478_SNP [dm6]	A	G	4.287e^-4	0.896	INTRON ft	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
2L	4463000	2L_4463000_SNP [dm3] 2L_4463000_SNP [dm6]	C	A	4.297e^-4	0.896	UTR_5_PRIME CG15443 UPSTREAM CG15436 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2904547	3L_2904547_SNP [dm3] 3L_2904547_SNP [dm6]	T	C	4.299e^-4	0.896	INTRON Shab
2R	11934819	2R_11934819_SNP [dm3] 2R_16047314_SNP [dm6]	C	G	4.306e^-4	0.896	UPSTREAM CG8405 DOWNSTREAM SP2353 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	12966424	2L_12966424_SNP [dm3] 2L_12966424_SNP [dm6]	T	G	4.311e^-4	0.896	UPSTREAM CG16800 INTERGENIC
2L	18426816	2L_18426816_SNP [dm3] 2L_18426816_SNP [dm6]	C	A	4.349e^-4	0.896	INTERGENIC
3L	2699395	3L_2699395_SNP [dm3] 3L_2699395_SNP [dm6]	C	T	4.351e^-4	0.896	INTRON Fife
2L	495220	2L_495220_SNP [dm3] 2L_495220_SNP [dm6]	A	C	4.364e^-4	0.896	INTRON ush
2L	497404	2L_497404_SNP [dm3] 2L_497404_SNP [dm6]	T	A	4.364e^-4	0.896	INTRON ush
X	20628539	X_20628539_SNP [dm3] X_20757512_SNP [dm6]	C	T	4.364e^-4	0.896	UPSTREAM CR44710 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20628541	X_20628541_SNP [dm3] X_20757514_SNP [dm6]	A	T	4.364e^-4	0.896	UPSTREAM CR44710 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20628571	X_20628571_SNP [dm3] X_20757544_SNP [dm6]	T	G	4.364e^-4	0.896	UPSTREAM CR44710 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20628588	X_20628588_SNP [dm3] X_20757561_SNP [dm6]	T	C	4.364e^-4	0.896	UPSTREAM CR44710 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15954866	2R_15954866_SNP [dm3] 2R_20067361_SNP [dm6]	G	A	4.370e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20727405	2R_20727405_SNP [dm3] 2R_24839882_SNP [dm6]	G	T	4.370e^-4	0.896	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20200539	2R_20200539_SNP [dm3] 2R_24313016_SNP [dm6]	G	A	4.371e^-4	0.896	UTR_3_PRIME betaTub60D	TF binding site mE1_TFBS_bab1
2L	1085695	2L_1085695_SNP [dm3] 2L_1085695_SNP [dm6]	A	G	4.373e^-4	0.896	DOWNSTREAM Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	1085698	2L_1085698_SNP [dm3] 2L_1085698_SNP [dm6]	G	A	4.373e^-4	0.896	DOWNSTREAM Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	8035112	2L_8035112_SNP [dm3] 2L_8035112_SNP [dm6]	A	T	4.378e^-4	0.896	INTRON CG7367 & 1 other
2L	5116802	2L_5116802_SNP [dm3] 2L_5116802_SNP [dm6]	G	C	4.402e^-4	0.896	INTRON Msp300
3R	24611206	3R_24611206_SNP [dm3] 3R_28785484_SNP [dm6]	C	T	4.409e^-4	0.896	INTERGENIC
3L	465235	3L_465235_DEL [dm3] 3L_465235_DEL [dm6]	AATCTTTCAA	A	4.415e^-4	0.896	INTRON klar
3L	2340609	3L_2340609_SNP [dm3] 3L_2340609_SNP [dm6]	C	G	4.418e^-4	0.896	INTRON MsR1	TF binding site mE1_TFBS_inv
3L	845542	3L_845542_SNP [dm3] 3L_845542_SNP [dm6]	T	C	4.422e^-4	0.896	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo
2L	1037004	2L_1037004_SNP [dm3] 2L_1037004_SNP [dm6]	A	G	4.426e^-4	0.896	UPSTREAM CG4415 INTRON IA-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	18457693	2L_18457693_SNP [dm3] 2L_18457693_SNP [dm6]	G	A	4.439e^-4	0.896	INTRON let-7-C
2R	16301581	2R_16301581_SNP [dm3] 2R_20414076_SNP [dm6]	G	T	4.454e^-4	0.896	INTERGENIC
3L	3046973	3L_3046973_SNP [dm3] 3L_3046973_SNP [dm6]	T	G	4.456e^-4	0.896	UPSTREAM Sk2 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	3460710	3L_3460710_SNP [dm3] 3L_3460710_SNP [dm6]	T	A	4.465e^-4	0.896	UTR_5_PRIME eIF5B UPSTREAM armi & 1 other	TF binding site BDTNP1_TFBS_dl
3R	12731090	3R_12731090_DEL [dm3] 3R_16905368_DEL [dm6]	GGG	G	4.469e^-4	0.896	INTRON iab-8	TF binding site mE1_TFBS_HSA
3R	13775134	3R_13775134_SNP [dm3] 3R_17949412_SNP [dm6]	C	T	4.472e^-4	0.896	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	7116014	3R_7116014_SNP [dm3] 3R_11290292_SNP [dm6]	T	C	4.472e^-4	0.896	INTRON CR31386
X	2094809	X_2094809_SNP [dm3] X_2200776_SNP [dm6]	A	G	4.473e^-4	0.896	SYNONYMOUS_CODING Mct1 EXON CR43637	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	2739906	2L_2739906_SNP [dm3] 2L_2739906_SNP [dm6]	A	T	4.481e^-4	0.896	UPSTREAM Hrs DOWNSTREAM CG31689 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19353380	2R_19353380_SNP [dm3] 2R_23465857_SNP [dm6]	A	G	4.485e^-4	0.896	INTRON CG43795
2L	1866525	2L_1866525_SNP [dm3] 2L_1866525_SNP [dm6]	G	A	4.489e^-4	0.896	SYNONYMOUS_CODING CG31663
3R	22927515	3R_22927515_SNP [dm3] 3R_27101793_SNP [dm6]	T	G	4.492e^-4	0.896	INTRON CG17189
3L	2701176	3L_2701176_SNP [dm3] 3L_2701176_SNP [dm6]	A	G	4.496e^-4	0.896	INTRON Fife
3L	2701231	3L_2701231_SNP [dm3] 3L_2701231_SNP [dm6]	A	T	4.496e^-4	0.896	INTRON Fife
3L	2701934	3L_2701934_SNP [dm3] 3L_2701934_SNP [dm6]	A	G	4.496e^-4	0.896	INTRON Fife
3R	17640171	3R_17640171_SNP [dm3] 3R_21814449_SNP [dm6]	A	C	4.496e^-4	0.896	INTRON CASK
3R	17640218	3R_17640218_SNP [dm3] 3R_21814496_SNP [dm6]	T	G	4.496e^-4	0.896	INTRON CASK
2R	17469418	2R_17469418_DEL [dm3] 2R_21581913_DEL [dm6]	TGTAT	T	4.497e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7109954	3R_7109954_SNP [dm3] 3R_11284232_SNP [dm6]	A	T	4.514e^-4	0.896	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5327002	3L_5327002_SNP [dm3] 3L_5333902_SNP [dm6]	G	T	4.524e^-4	0.896	UPSTREAM CR45742 INTERGENIC
3L	15921515	3L_15921515_SNP [dm3] 3L_15928415_SNP [dm6]	A	C	4.525e^-4	0.896	INTRON Pka-C3
2L	2750241	2L_2750241_SNP [dm3] 2L_2750241_SNP [dm6]	C	A	4.526e^-4	0.896	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20179595	2R_20179595_SNP [dm3] 2R_24292072_SNP [dm6]	C	T	4.526e^-4	0.896	DOWNSTREAM nvy INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14512830	3L_14512830_SNP [dm3] 3L_14519730_SNP [dm6]	T	C	4.535e^-4	0.896	DOWNSTREAM CG4613 INTRON bbg
2R	5983499	2R_5983499_SNP [dm3] 2R_10095994_SNP [dm6]	C	T	4.535e^-4	0.896	UTR_3_PRIME CG2269 UPSTREAM Jra	TF binding site BDTNP1_TFBS_dl
2R	9161894	2R_9161894_SNP [dm3] 2R_13274389_SNP [dm6]	G	A	4.536e^-4	0.896	INTRON Dh31-R
2L	258656	2L_258656_SNP [dm3] 2L_258656_SNP [dm6]	T	C	4.545e^-4	0.896	INTRON CG3645
2L	13922498	2L_13922498_SNP [dm3] 2L_13922498_SNP [dm6]	G	A	4.552e^-4	0.896	INTRON Ance-3 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	709339	2L_709339_SNP [dm3] 2L_709339_SNP [dm6]	T	C	4.558e^-4	0.896	INTRON ds
3L	8777847	3L_8777847_SNP [dm3] 3L_8784747_SNP [dm6]	T	C	4.559e^-4	0.896	INTRON Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	7800541	2R_7800541_SNP [dm3] 2R_11913036_SNP [dm6]	C	T	4.564e^-4	0.896	UPSTREAM CG13183 INTERGENIC
2L	18607784	2L_18607784_SNP [dm3] 2L_18607784_SNP [dm6]	G	T	4.604e^-4	0.896	SYNONYMOUS_CODING CG10333	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26096234	3R_26096234_SNP [dm3] 3R_30270512_SNP [dm6]	G	A	4.604e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16748560	3R_16748560_SNP [dm3] 3R_20922838_SNP [dm6]	T	G	4.606e^-4	0.896	INTRON CG31191 & 1 other
2R	5295144	2R_5295144_SNP [dm3] 2R_9407639_SNP [dm6]	A	T	4.612e^-4	0.896	INTRON wun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25360543	3R_25360543_SNP [dm3] 3R_29534821_SNP [dm6]	A	T	4.625e^-4	0.896	INTRON CR43613	TF binding site mE1_TFBS_chinmo
3R	17647592	3R_17647592_SNP [dm3] 3R_21821870_SNP [dm6]	G	C	4.628e^-4	0.896	INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18486459	2L_18486459_SNP [dm3] 2L_18486459_SNP [dm6]	T	C	4.636e^-4	0.896	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20203654	3R_20203654_DEL [dm3] 3R_24377932_DEL [dm6]	TT	T	4.638e^-4	0.896	DOWNSTREAM CG33342 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20694482	3L_20694482_SNP [dm3] 3L_20701382_SNP [dm6]	A	T	4.642e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	5257447	3L_5257447_SNP [dm3] 3L_5264347_SNP [dm6]	A	G	4.644e^-4	0.896	INTRON shep
2R	6099147	2R_6099147_SNP [dm3] 2R_10211642_SNP [dm6]	G	A	4.653e^-4	0.896	UPSTREAM Hr46 INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	19054164	X_19054164_SNP [dm3] X_19160131_SNP [dm6]	C	T	4.662e^-4	0.896	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11411502	3L_11411502_SNP [dm3] 3L_11418402_SNP [dm6]	A	G	4.662e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	17767823	3L_17767823_SNP [dm3] 3L_17774723_SNP [dm6]	T	G	4.676e^-4	0.896	INTERGENIC
3L	4099573	3L_4099573_SNP [dm3] 3L_4099573_SNP [dm6]	G	T	4.680e^-4	0.896	INTRON CG14995	TF binding site mE1_TFBS_inv
3L	7360042	3L_7360042_SNP [dm3] 3L_7366942_SNP [dm6]	T	C	4.688e^-4	0.896	UTR_3_PRIME Sh3beta INTRON Sh3beta
2R	14817378	2R_14817378_SNP [dm3] 2R_18929873_SNP [dm6]	C	T	4.704e^-4	0.896	INTRON sano
3L	24232015	3L_24232015_SNP [dm3] 3L_24238915_SNP [dm6]	A	G	4.730e^-4	0.896	INTRON Snap25
2L	1341990	2L_1341990_DEL [dm3] 2L_1341990_DEL [dm6]	AGGGTATTAAGTACTTAA...	A	4.738e^-4	0.896	SPLICE_SITE_REGION CG33923 INTRON CG33923
2L	2699755	2L_2699755_SNP [dm3] 2L_2699755_SNP [dm6]	T	A	4.747e^-4	0.896	INTRON CG31690
2R	20734601	2R_20734601_SNP [dm3] 2R_24847078_SNP [dm6]	C	T	4.747e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
X	7007598	X_7007598_SNP [dm3] X_7113565_SNP [dm6]	A	G	4.751e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7040005	2L_7040005_SNP [dm3] 2L_7040005_SNP [dm6]	A	T	4.752e^-4	0.896	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17882286	2L_17882286_SNP [dm3] 2L_17882286_SNP [dm6]	A	G	4.753e^-4	0.896	INTERGENIC
2L	15443977	2L_15443977_SNP [dm3] 2L_15443977_SNP [dm6]	T	G	4.754e^-4	0.896	INTERGENIC
2L	14379298	2L_14379298_SNP [dm3] 2L_14379298_SNP [dm6]	G	T	4.754e^-4	0.896	SYNONYMOUS_CODING ppk	TF binding site mE1_TFBS_sens
X	12142325	X_12142325_DEL [dm3] X_12248292_DEL [dm6]	CA	C	4.759e^-4	0.896	INTRON Ten-a
X	3804420	X_3804420_SNP [dm3] X_3910387_SNP [dm6]	T	C	4.761e^-4	0.896	INTRON CG42541	TF binding site mE1_TFBS_chinmo
X	3804422	X_3804422_SNP [dm3] X_3910389_SNP [dm6]	C	T	4.761e^-4	0.896	INTRON CG42541	TF binding site mE1_TFBS_chinmo
X	3804426	X_3804426_MNP [dm3] X_3910393_MNP [dm6]	AAC	GGT	4.761e^-4	0.896	INTRON CG42541	TF binding site mE1_TFBS_chinmo
X	3804433	X_3804433_SNP [dm3] X_3910400_SNP [dm6]	C	T	4.761e^-4	0.896	INTRON CG42541	TF binding site mE1_TFBS_chinmo
3L	1127829	3L_1127829_SNP [dm3] 3L_1127829_SNP [dm6]	C	A	4.762e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
3L	9639202	3L_9639202_SNP [dm3] 3L_9646102_SNP [dm6]	T	A	4.783e^-4	0.896	INTRON fry & 1 other
X	9447213	X_9447213_SNP [dm3] X_9553180_SNP [dm6]	A	C	4.790e^-4	0.896	INTRON l_1_G0320	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18979812	2R_18979812_SNP [dm3] 2R_23092289_SNP [dm6]	T	C	4.790e^-4	0.896	INTRON CG9876
X	19055052	X_19055052_SNP [dm3] X_19161019_SNP [dm6]	A	G	4.799e^-4	0.896	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6006435	2L_6006435_SNP [dm3] 2L_6006435_SNP [dm6]	A	T	4.804e^-4	0.896	DOWNSTREAM CR43866 & 1 other INTRON Gal	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4406374	2R_4406374_SNP [dm3] 2R_8518869_SNP [dm6]	G	A	4.810e^-4	0.896	INTRON mtt
2R	4406385	2R_4406385_SNP [dm3] 2R_8518880_SNP [dm6]	T	C	4.810e^-4	0.896	INTRON mtt
2R	4406399	2R_4406399_SNP [dm3] 2R_8518894_SNP [dm6]	T	A	4.810e^-4	0.896	INTRON mtt
2R	4406402	2R_4406402_SNP [dm3] 2R_8518897_SNP [dm6]	C	T	4.810e^-4	0.896	INTRON mtt
2R	4406404	2R_4406404_MNP [dm3] 2R_8518899_MNP [dm6]	TGG	AAA	4.810e^-4	0.896	INTRON mtt
2R	4406408	2R_4406408_SNP [dm3] 2R_8518903_SNP [dm6]	C	A	4.810e^-4	0.896	INTRON mtt
2R	4406426	2R_4406426_SNP [dm3] 2R_8518921_SNP [dm6]	C	T	4.810e^-4	0.896	INTRON mtt
2R	4406428	2R_4406428_SNP [dm3] 2R_8518923_SNP [dm6]	C	T	4.810e^-4	0.896	INTRON mtt
3R	5311057	3R_5311057_SNP [dm3] 3R_9485335_SNP [dm6]	A	G	4.813e^-4	0.896	INTRON CG16779
2L	16404553	2L_16404553_SNP [dm3] 2L_16404553_SNP [dm6]	T	C	4.822e^-4	0.896	SYNONYMOUS_CODING CG5888
2L	12652373	2L_12652373_SNP [dm3] 2L_12652373_SNP [dm6]	C	A	4.827e^-4	0.896	INTERGENIC
2R	10274828	2R_10274828_SNP [dm3] 2R_14387323_SNP [dm6]	G	A	4.829e^-4	0.896	INTERGENIC
2R	12553993	2R_12553993_SNP [dm3] 2R_16666488_SNP [dm6]	C	A	4.832e^-4	0.896	INTRON Picot	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7289524	2L_7289524_SNP [dm3] 2L_7289524_SNP [dm6]	T	A	4.837e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4203049	2L_4203049_SNP [dm3] 2L_4203049_SNP [dm6]	T	C	4.838e^-4	0.896	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
2L	1879860	2L_1879860_SNP [dm3] 2L_1879860_SNP [dm6]	G	T	4.866e^-4	0.896	INTRON CG31663
2L	1879862	2L_1879862_SNP [dm3] 2L_1879862_SNP [dm6]	C	G	4.866e^-4	0.896	INTRON CG31663
2R	17139715	2R_17139715_SNP [dm3] 2R_21252210_SNP [dm6]	A	C	4.866e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	19341653	2R_19341653_SNP [dm3] 2R_23454130_SNP [dm6]	C	G	4.866e^-4	0.896	INTRON CG43795
3L	10522044	3L_10522044_SNP [dm3] 3L_10528944_SNP [dm6]	C	T	4.867e^-4	0.896	INTRON A2bp1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	9804537	2L_9804537_SNP [dm3] 2L_9804537_SNP [dm6]	A	C	4.870e^-4	0.896	INTRON nAChRalpha6
2L	5426963	2L_5426963_SNP [dm3] 2L_5426963_SNP [dm6]	C	T	4.879e^-4	0.896	INTERGENIC
3R	24721732	3R_24721732_SNP [dm3] 3R_28896010_SNP [dm6]	A	T	4.880e^-4	0.896	INTRON Doa
2R	11873900	2R_11873900_SNP [dm3] 2R_15986395_SNP [dm6]	T	C	4.882e^-4	0.896	INTRON Strn-Mlck
X	17392698	X_17392698_SNP [dm3] X_17498665_SNP [dm6]	A	T	4.889e^-4	0.896	INTRON CG43658
2R	10274348	2R_10274348_SNP [dm3] 2R_14386843_SNP [dm6]	G	C	4.894e^-4	0.896	INTERGENIC
3R	420879	3R_420879_SNP [dm3] 3R_4595157_SNP [dm6]	G	A	4.903e^-4	0.896	INTERGENIC
2R	17191535	2R_17191535_SNP [dm3] 2R_21304030_SNP [dm6]	T	G	4.935e^-4	0.896	INTRON CG42672	TF binding site mE1_TFBS_cad
2R	17191580	2R_17191580_SNP [dm3] 2R_21304075_SNP [dm6]	A	T	4.935e^-4	0.896	SPLICE_SITE_REGION CG42672 INTRON CG42672	TF binding site mE1_TFBS_cad
2R	15955120	2R_15955120_SNP [dm3] 2R_20067615_SNP [dm6]	A	T	4.940e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12796547	X_12796547_SNP [dm3] X_12902514_SNP [dm6]	A	G	4.940e^-4	0.896	SYNONYMOUS_CODING CG4407	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7100680	3L_7100680_SNP [dm3] 3L_7107580_SNP [dm6]	G	A	4.942e^-4	0.896	INTRON form3
3R	21898181	3R_21898181_SNP [dm3] 3R_26072459_SNP [dm6]	A	C	4.948e^-4	0.896	UPSTREAM CR44950 INTERGENIC
3L	8823904	3L_8823904_SNP [dm3] 3L_8830804_SNP [dm6]	C	T	4.949e^-4	0.896	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_sens
X	175068	X_175068_SNP [dm3] X_281035_SNP [dm6]	A	G	4.965e^-4	0.896	UPSTREAM mir-980 INTRON CG3777	TF binding site BDTNP1_TFBS_hb
2L	13924117	2L_13924117_SNP [dm3] 2L_13924117_SNP [dm6]	C	T	4.966e^-4	0.896	UPSTREAM CG16886 INTRON Ance-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13576615	2L_13576615_SNP [dm3] 2L_13576615_SNP [dm6]	A	C	4.973e^-4	0.896	INTRON kuz
X	9079091	X_9079091_INS [dm3] X_9185058_INS [dm6]	C	CGTAAAC	4.983e^-4	0.896	UTR_3_PRIME mei-P26
2L	11972090	2L_11972090_SNP [dm3] 2L_11972090_SNP [dm6]	G	T	4.984e^-4	0.896	UPSTREAM CR43314 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3L	7868966	3L_7868966_SNP [dm3] 3L_7875866_SNP [dm6]	C	T	4.989e^-4	0.896	INTRON CG32365
X	3804414	X_3804414_SNP [dm3] X_3910381_SNP [dm6]	T	C	4.995e^-4	0.896	INTRON CG42541	TF binding site mE1_TFBS_chinmo
3L	18016286	3L_18016286_SNP [dm3] 3L_18023186_SNP [dm6]	T	A	5.014e^-4	0.896	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8802859	3L_8802859_SNP [dm3] 3L_8809759_SNP [dm6]	G	A	5.018e^-4	0.896	UPSTREAM CG13309 DOWNSTREAM CG13308 INTERGENIC
X	22133718	X_22133718_SNP [dm3] X_22731882_SNP [dm6]	A	C	5.021e^-4	0.896	INTRON CR44997
2R	5295020	2R_5295020_SNP [dm3] 2R_9407515_SNP [dm6]	G	C	5.045e^-4	0.896	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	24373845	3R_24373845_SNP [dm3] 3R_28548123_SNP [dm6]	G	C	5.046e^-4	0.896	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7050752	2R_7050752_INS [dm3] 2R_11163247_INS [dm6]	A	ATGGG	5.050e^-4	0.896	INTRON shn & 1 other
3R	24716190	3R_24716190_SNP [dm3] 3R_28890468_SNP [dm6]	C	T	5.052e^-4	0.896	INTRON Doa
2L	4048636	2L_4048636_SNP [dm3] 2L_4048636_SNP [dm6]	T	G	5.061e^-4	0.896	INTRON ed
3L	2548614	3L_2548614_SNP [dm3] 3L_2548614_SNP [dm6]	C	T	5.067e^-4	0.896	INTRON Spn
2L	3042389	2L_3042389_SNP [dm3] 2L_3042389_SNP [dm6]	G	A	5.068e^-4	0.896	UPSTREAM CG17261 DOWNSTREAM CG17221 INTERGENIC
3L	18891157	3L_18891157_SNP [dm3] 3L_18898057_SNP [dm6]	G	A	5.077e^-4	0.896	SPLICE_SITE_REGION CG3902 UPSTREAM RpL26 INTRON CG3902
2L	13535750	2L_13535750_SNP [dm3] 2L_13535750_SNP [dm6]	C	T	5.079e^-4	0.896	UTR_5_PRIME CG15638 INTRON B4
2R	10268657	2R_10268657_SNP [dm3] 2R_14381152_SNP [dm6]	G	C	5.099e^-4	0.896	INTRON Dh44-R1
3R	22141489	3R_22141489_SNP [dm3] 3R_26315767_SNP [dm6]	A	G	5.100e^-4	0.896	INTERGENIC
3R	22141490	3R_22141490_SNP [dm3] 3R_26315768_SNP [dm6]	A	T	5.100e^-4	0.896	INTERGENIC
2L	13988913	2L_13988913_SNP [dm3] 2L_13988913_SNP [dm6]	T	C	5.107e^-4	0.896	INTRON rk
2L	2740253	2L_2740253_DEL [dm3] 2L_2740253_DEL [dm6]	AA	A	5.111e^-4	0.896	UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	836499	2R_836499_SNP [dm3] 2R_4948994_SNP [dm6]	A	G	5.123e^-4	0.896	INTRON Ir41a
3L	6028668	3L_6028668_SNP [dm3] 3L_6035568_SNP [dm6]	C	A	5.126e^-4	0.896	SYNONYMOUS_CODING yip7 UPSTREAM CG10477 & 1 other	TF binding site mE1_TFBS_cad
3R	14166290	3R_14166290_SNP [dm3] 3R_18340568_SNP [dm6]	G	A	5.147e^-4	0.896	INTRON CG15803
2L	15007085	2L_15007085_SNP [dm3] 2L_15007085_SNP [dm6]	G	A	5.147e^-4	0.896	SYNONYMOUS_CODING l_2_35Be UPSTREAM NC2beta DOWNSTREAM dyn-p25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14028128	2L_14028128_SNP [dm3] 2L_14028128_SNP [dm6]	C	T	5.159e^-4	0.896	INTRON CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5977715	2R_5977715_SNP [dm3] 2R_10090210_SNP [dm6]	T	C	5.176e^-4	0.896	INTRON CG2269
2R	2451635	2R_2451635_SNP [dm3] 2R_6564130_SNP [dm6]	G	A	5.176e^-4	0.896	INTRON jing
2R	2451636	2R_2451636_SNP [dm3] 2R_6564131_SNP [dm6]	G	A	5.176e^-4	0.896	INTRON jing
3R	1797238	3R_1797238_SNP [dm3] 3R_5971516_SNP [dm6]	C	T	5.179e^-4	0.896	DOWNSTREAM CR44926 & 1 other INTERGENIC
2L	6004099	2L_6004099_SNP [dm3] 2L_6004099_SNP [dm6]	G	T	5.182e^-4	0.896	NON_SYNONYMOUS_CODING Gal UPSTREAM CR43866 DOWNSTREAM Tsp26A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6295838	2R_6295838_INS [dm3] 2R_10408333_INS [dm6]	C	CC	5.187e^-4	0.896	UPSTREAM CG12898 DOWNSTREAM CG43177 & 1 other INTRON CG42732
2R	18542615	2R_18542615_SNP [dm3] 2R_22655110_SNP [dm6]	G	T	5.188e^-4	0.896	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1030740	2L_1030740_SNP [dm3] 2L_1030740_SNP [dm6]	T	C	5.193e^-4	0.896	INTRON IA-2
2L	13778729	2L_13778729_SNP [dm3] 2L_13778729_SNP [dm6]	T	G	5.209e^-4	0.896	DOWNSTREAM CR31845 INTRON CG9008
3L	7865235	3L_7865235_SNP [dm3] 3L_7872135_SNP [dm6]	C	T	5.223e^-4	0.896	INTRON CG32365
2R	17720613	2R_17720613_SNP [dm3] 2R_21833108_SNP [dm6]	G	T	5.244e^-4	0.896	INTRON CG34040	TF binding site mE1_TFBS_sens
3L	15002995	3L_15002995_SNP [dm3] 3L_15009895_SNP [dm6]	A	T	5.252e^-4	0.896	INTRON Reck
2L	15540022	2L_15540022_SNP [dm3] 2L_15540022_SNP [dm6]	G	A	5.253e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9021845	2L_9021845_SNP [dm3] 2L_9021845_SNP [dm6]	G	A	5.255e^-4	0.896	INTERGENIC
2R	14471663	2R_14471663_SNP [dm3] 2R_18584158_SNP [dm6]	T	C	5.259e^-4	0.896	UPSTREAM GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5294932	2R_5294932_SNP [dm3] 2R_9407427_SNP [dm6]	A	C	5.260e^-4	0.896	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5329128	3L_5329128_SNP [dm3] 3L_5336028_SNP [dm6]	T	C	5.266e^-4	0.896	DOWNSTREAM CR45742 INTERGENIC
X	20658930	X_20658930_DEL [dm3] X_20787903_DEL [dm6]	GACTCT	C	5.271e^-4	0.896	UTR_5_PRIME shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl
2R	3905624	2R_3905624_SNP [dm3] 2R_8018119_SNP [dm6]	A	G	5.280e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19039575	2R_19039575_SNP [dm3] 2R_23152052_SNP [dm6]	C	T	5.286e^-4	0.896	UPSTREAM CG43207 INTERGENIC
3L	5169211	3L_5169211_INS [dm3] 3L_5176111_INS [dm6]	A	ATACA	5.288e^-4	0.896	INTRON shep
2L	2947866	2L_2947866_SNP [dm3] 2L_2947866_SNP [dm6]	T	A	5.293e^-4	0.896	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_chinmo
3R	7123739	3R_7123739_SNP [dm3] 3R_11298017_SNP [dm6]	C	T	5.303e^-4	0.896	INTRON CR31386
2R	20739186	2R_20739186_SNP [dm3] 2R_24851663_SNP [dm6]	T	C	5.306e^-4	0.896	INTERGENIC	regulatory region REDfly_CRMs
3R	13528456	3R_13528456_INS [dm3] 3R_17702734_INS [dm6]	C	CC	5.308e^-4	0.896	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13528458	3R_13528458_SNP [dm3] 3R_17702736_SNP [dm6]	A	T	5.308e^-4	0.896	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13528459	3R_13528459_SNP [dm3] 3R_17702737_SNP [dm6]	A	T	5.308e^-4	0.896	INTRON osa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18172919	X_18172919_SNP [dm3] X_18278886_SNP [dm6]	C	T	5.313e^-4	0.896	INTRON upd3
3L	15000151	3L_15000151_SNP [dm3] 3L_15007051_SNP [dm6]	C	T	5.351e^-4	0.896	INTRON Reck
2L	9142107	2L_9142107_SNP [dm3] 2L_9142107_SNP [dm6]	C	T	5.354e^-4	0.896	INTRON CG32982
2L	9142115	2L_9142115_SNP [dm3] 2L_9142115_SNP [dm6]	C	T	5.354e^-4	0.896	INTRON CG32982
X	2144177	X_2144177_SNP [dm3] X_2250144_SNP [dm6]	T	A	5.355e^-4	0.896	UPSTREAM crn DOWNSTREAM CG3191 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	16453042	3L_16453042_SNP [dm3] 3L_16459942_SNP [dm6]	G	A	5.362e^-4	0.896	INTRON CG33158
2R	4339540	2R_4339540_SNP [dm3] 2R_8452035_SNP [dm6]	G	A	5.379e^-4	0.896	UPSTREAM Mal-A1 INTERGENIC
2L	12729760	2L_12729760_SNP [dm3] 2L_12729760_SNP [dm6]	A	C	5.380e^-4	0.896	INTRON MRP	TF binding site BDTNP1_TFBS_twi
X	2448925	X_2448925_SNP [dm3] X_2554892_SNP [dm6]	T	A	5.382e^-4	0.896	INTRON Pdfr
2R	20028761	2R_20028761_SNP [dm3] 2R_24141238_SNP [dm6]	G	T	5.387e^-4	0.896	INTRON Dat
3R	9605069	3R_9605069_SNP [dm3] 3R_13779347_SNP [dm6]	T	G	5.391e^-4	0.896	UPSTREAM CG9288 & 1 other DOWNSTREAM CG9297 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.337e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01148
In_3R_Mo	0.02468

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	9.878	0.0072

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1761 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	4203049	2L_4203049_SNP [dm3] 2L_4203049_SNP [dm6]	T	C	2.630e^-7	0.46	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo
2R	8734877	2R_8734877_SNP [dm3] 2R_12847372_SNP [dm6]	C	A	5.212e^-7	0.46	UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486 INTRON antr
2L	5915394	2L_5915394_SNP [dm3] 2L_5915394_SNP [dm6]	G	A	1.854e^-6	0.872	INTRON bchs
3L	9912123	3L_9912123_SNP [dm3] 3L_9919023_SNP [dm6]	C	T	2.605e^-6	0.872	INTRON CG34356
X	20759340	X_20759340_SNP [dm3] X_20888313_SNP [dm6]	A	C	3.561e^-6	0.872	INTRON shakB
2L	2677644	2L_2677644_SNP [dm3] 2L_2677644_SNP [dm6]	A	G	3.652e^-6	0.872	UPSTREAM CG31690 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15016636	2L_15016636_SNP [dm3] 2L_15016636_SNP [dm6]	T	C	4.032e^-6	0.872	UTR_5_PRIME GABA-B-R1	TF binding site BDTNP1_TFBS_dl
2R	16399843	2R_16399843_SNP [dm3] 2R_20512338_SNP [dm6]	G	T	5.826e^-6	0.872	DOWNSTREAM CR44648 & 2 others INTERGENIC
2R	16399865	2R_16399865_SNP [dm3] 2R_20512360_SNP [dm6]	C	T	5.826e^-6	0.872	DOWNSTREAM CR44648 & 2 others INTERGENIC
2R	8734907	2R_8734907_SNP [dm3] 2R_12847402_SNP [dm6]	T	C	8.061e^-6	0.872	UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486 INTRON antr
2R	8734944	2R_8734944_SNP [dm3] 2R_12847439_SNP [dm6]	T	A	8.061e^-6	0.872	SYNONYMOUS_CODING antr UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486
2L	15808317	2L_15808317_SNP [dm3] 2L_15808317_SNP [dm6]	A	C	1.106e^-5	0.872	EXON CR44602
2R	15489890	2R_15489890_SNP [dm3] 2R_19602385_SNP [dm6]	A	T	1.353e^-5	0.872	UPSTREAM CR44473 INTRON sm
2R	9355290	2R_9355290_SNP [dm3] 2R_13467785_SNP [dm6]	G	C	1.685e^-5	0.872	INTRON arr
3R	6335551	3R_6335551_SNP [dm3] 3R_10509829_SNP [dm6]	T	A	1.832e^-5	0.872	UTR_3_PRIME hth DOWNSTREAM hth	TF binding site mE1_TFBS_zfh1
2L	1738835	2L_1738835_DEL [dm3] 2L_1738835_DEL [dm6]	GGGATGG	C	2.037e^-5	0.872	INTRON CG17646
X	2090183	X_2090183_SNP [dm3] X_2196150_SNP [dm6]	T	C	2.298e^-5	0.872	INTRON Mct1
X	2094809	X_2094809_SNP [dm3] X_2200776_SNP [dm6]	A	G	2.326e^-5	0.872	SYNONYMOUS_CODING Mct1 EXON CR43637	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	1738324	2L_1738324_SNP [dm3] 2L_1738324_SNP [dm6]	A	G	2.533e^-5	0.872	INTRON CG17646	TF binding site mE1_TFBS_Trl
2R	5983504	2R_5983504_SNP [dm3] 2R_10095999_SNP [dm6]	A	C	2.596e^-5	0.872	UTR_3_PRIME CG2269 UPSTREAM Jra	TF binding site BDTNP1_TFBS_dl
3R	24107194	3R_24107194_SNP [dm3] 3R_28281472_SNP [dm6]	A	C	2.721e^-5	0.872	INTERGENIC
2L	4048353	2L_4048353_SNP [dm3] 2L_4048353_SNP [dm6]	G	T	2.756e^-5	0.872	INTRON ed	TF binding site mE1_TFBS_chinmo
3L	21229545	3L_21229545_SNP [dm3] 3L_21236445_SNP [dm6]	T	A	2.820e^-5	0.872	INTRON Eip78C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21229786	3L_21229786_SNP [dm3] 3L_21236686_SNP [dm6]	G	A	2.831e^-5	0.872	INTRON Eip78C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26497570	3R_26497570_SNP [dm3] 3R_30671848_SNP [dm6]	A	G	2.842e^-5	0.872	INTERGENIC
3L	4751680	3L_4751680_SNP [dm3] 3L_4751680_SNP [dm6]	C	G	2.863e^-5	0.872	DOWNSTREAM CG12493 INTRON RhoGEF64C
2R	7338336	2R_7338336_SNP [dm3] 2R_11450831_SNP [dm6]	T	C	2.881e^-5	0.872	UTR_3_PRIME qvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	6303254	2L_6303254_SNP [dm3] 2L_6303254_SNP [dm6]	G	A	2.898e^-5	0.872	SYNONYMOUS_CODING Ddr
2L	3465903	2L_3465903_INS [dm3] 2L_3465903_INS [dm6]	T	TTT	2.926e^-5	0.872	UTR_5_PRIME msl-2 UPSTREAM Pdsw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	14213425	3L_14213425_SNP [dm3] 3L_14220325_SNP [dm6]	C	A	2.952e^-5	0.872	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16893557	2R_16893557_SNP [dm3] 2R_21006052_SNP [dm6]	A	G	2.995e^-5	0.872	NON_SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad
2L	3197535	2L_3197535_SNP [dm3] 2L_3197535_SNP [dm6]	T	A	3.033e^-5	0.872	INTRON CG34393
2L	1099747	2L_1099747_SNP [dm3] 2L_1099747_SNP [dm6]	C	T	3.137e^-5	0.872	INTRON CG4629
2R	4765525	2R_4765525_SNP [dm3] 2R_8878020_SNP [dm6]	C	A	3.151e^-5	0.872	INTRON RyR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18336130	2R_18336130_SNP [dm3] 2R_22448625_SNP [dm6]	G	A	3.260e^-5	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1741595	2L_1741595_SNP [dm3] 2L_1741595_SNP [dm6]	T	C	3.370e^-5	0.872	INTRON CG17646	TF binding site mE1_TFBS_chinmo
2L	17024745	2L_17024745_INS [dm3] 2L_17024745_INS [dm6]	A	ATTT	3.370e^-5	0.872	INTERGENIC
2L	11430806	2L_11430806_SNP [dm3] 2L_11430806_SNP [dm6]	T	A	3.379e^-5	0.872	INTERGENIC
3L	16308320	3L_16308320_SNP [dm3] 3L_16315220_SNP [dm6]	A	T	3.392e^-5	0.872	DOWNSTREAM CG13062 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15311169	2L_15311169_SNP [dm3] 2L_15311169_SNP [dm6]	A	T	3.425e^-5	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7525677	2R_7525677_SNP [dm3] 2R_11638172_SNP [dm6]	A	G	3.432e^-5	0.872	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4203130	2L_4203130_SNP [dm3] 2L_4203130_SNP [dm6]	C	T	3.529e^-5	0.872	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2R	19198223	2R_19198223_SNP [dm3] 2R_23310700_SNP [dm6]	T	G	3.641e^-5	0.872	UPSTREAM Prosbeta5R1 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20515455	3R_20515455_DEL [dm3] 3R_24689733_DEL [dm6]	AATACATGCGTGATGTA...	A	3.788e^-5	0.872	INTRON slo
3R	20515474	3R_20515474_SNP [dm3] 3R_24689752_SNP [dm6]	C	A	3.788e^-5	0.872	INTRON slo
2R	5498305	2R_5498305_SNP [dm3] 2R_9610800_SNP [dm6]	A	T	3.823e^-5	0.872	UPSTREAM CG12926 DOWNSTREAM Mmp2 INTRON CR44069	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16307843	3L_16307843_SNP [dm3] 3L_16314743_SNP [dm6]	C	T	3.853e^-5	0.872	SYNONYMOUS_CODING CG13062	TF binding site mE1_TFBS_HSA
3L	13816520	3L_13816520_SNP [dm3] 3L_13823420_SNP [dm6]	A	G	3.860e^-5	0.872	INTERGENIC
X	2098325	X_2098325_SNP [dm3] X_2204292_SNP [dm6]	A	G	4.099e^-5	0.872	SYNONYMOUS_CODING Mct1 UPSTREAM CG18031	TF binding site mE1_TFBS_chinmo
2L	2896597	2L_2896597_SNP [dm3] 2L_2896597_SNP [dm6]	C	T	4.122e^-5	0.872	INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	7050624	2R_7050624_SNP [dm3] 2R_11163119_SNP [dm6]	A	T	4.359e^-5	0.872	INTRON shn & 1 other
X	14079080	X_14079080_SNP [dm3] X_14185047_SNP [dm6]	T	A	4.493e^-5	0.872	NON_SYNONYMOUS_CODING CG32603	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3006543	3L_3006543_SNP [dm3] 3L_3006543_SNP [dm6]	C	A	4.554e^-5	0.872	INTRON FMRFaR
3L	15523207	3L_15523207_SNP [dm3] 3L_15530107_SNP [dm6]	G	A	4.606e^-5	0.872	UTR_3_PRIME CG43248 UPSTREAM obst-H
2L	1732417	2L_1732417_SNP [dm3] 2L_1732417_SNP [dm6]	T	C	4.749e^-5	0.872	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	20409058	3L_20409058_DEL [dm3] 3L_20415958_DEL [dm6]	ATTATACAAAT...	G	4.856e^-5	0.872	INTRON zye
2L	1743616	2L_1743616_SNP [dm3] 2L_1743616_SNP [dm6]	T	C	4.915e^-5	0.872	INTRON CG17646
3R	17647592	3R_17647592_SNP [dm3] 3R_21821870_SNP [dm6]	G	C	4.918e^-5	0.872	INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10173712	2L_10173712_SNP [dm3] 2L_10173712_SNP [dm6]	C	A	4.928e^-5	0.872	NON_SYNONYMOUS_CODING CG13137 INTRON CG44153	TF binding site mE1_TFBS_cad
2L	1741404	2L_1741404_SNP [dm3] 2L_1741404_SNP [dm6]	C	A	4.982e^-5	0.872	INTRON CG17646
X	17639731	X_17639731_SNP [dm3] X_17745698_SNP [dm6]	G	T	5.021e^-5	0.872	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	15523225	3L_15523225_SNP [dm3] 3L_15530125_SNP [dm6]	G	A	5.159e^-5	0.872	UTR_3_PRIME CG43248 UPSTREAM obst-H	TF binding site BDTNP1_TFBS_dl
3L	15523246	3L_15523246_SNP [dm3] 3L_15530146_SNP [dm6]	G	A	5.159e^-5	0.872	UTR_3_PRIME CG43248 UPSTREAM obst-H	TF binding site BDTNP1_TFBS_dl
X	12797558	X_12797558_SNP [dm3] X_12903525_SNP [dm6]	T	C	5.229e^-5	0.872	UPSTREAM CG4407 DOWNSTREAM CG4404 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6898712	3L_6898712_SNP [dm3] 3L_6905612_SNP [dm6]	C	A	5.258e^-5	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	6899137	3L_6899137_SNP [dm3] 3L_6906037_SNP [dm6]	G	A	5.258e^-5	0.872	INTERGENIC
3L	6899154	3L_6899154_SNP [dm3] 3L_6906054_SNP [dm6]	T	A	5.258e^-5	0.872	INTERGENIC
3L	6899265	3L_6899265_SNP [dm3] 3L_6906165_SNP [dm6]	G	A	5.258e^-5	0.872	INTERGENIC
X	14520906	X_14520906_DEL [dm3] X_14626873_DEL [dm6]	ACATA	A	5.265e^-5	0.872	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8538421	3L_8538421_SNP [dm3] 3L_8545321_SNP [dm6]	T	A	5.302e^-5	0.872	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16906802	2R_16906802_SNP [dm3] 2R_21019297_SNP [dm6]	C	T	5.326e^-5	0.872	UTR_5_PRIME RIC-3
3R	20980583	3R_20980583_SNP [dm3] 3R_25154861_SNP [dm6]	C	T	5.328e^-5	0.872	INTERGENIC
2R	10555765	2R_10555765_SNP [dm3] 2R_14668260_SNP [dm6]	C	G	5.447e^-5	0.872	UPSTREAM CG12866 INTERGENIC
2R	10555995	2R_10555995_SNP [dm3] 2R_14668490_SNP [dm6]	G	C	5.447e^-5	0.872	UTR_5_PRIME CG12866 INTRON CG12866
X	2101524	X_2101524_SNP [dm3] X_2207491_SNP [dm6]	G	A	5.453e^-5	0.872	INTRON msta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2098521	X_2098521_SNP [dm3] X_2204488_SNP [dm6]	C	T	5.516e^-5	0.872	UPSTREAM CG18031 INTRON Mct1	TF binding site mE1_TFBS_chinmo
3L	15768374	3L_15768374_SNP [dm3] 3L_15775274_SNP [dm6]	C	G	5.615e^-5	0.872	INTERGENIC
3R	13911314	3R_13911314_SNP [dm3] 3R_18085592_SNP [dm6]	G	C	5.628e^-5	0.872	INTERGENIC
2R	8718840	2R_8718840_SNP [dm3] 2R_12831335_SNP [dm6]	A	G	5.630e^-5	0.872	INTERGENIC
3R	13676487	3R_13676487_SNP [dm3] 3R_17850765_SNP [dm6]	T	G	5.683e^-5	0.872	INTRON tinc
3R	13676489	3R_13676489_SNP [dm3] 3R_17850767_SNP [dm6]	T	G	5.683e^-5	0.872	INTRON tinc
3R	13676501	3R_13676501_DEL [dm3] 3R_17850779_DEL [dm6]	TC	A	5.683e^-5	0.872	INTRON tinc
3R	13676506	3R_13676506_SNP [dm3] 3R_17850784_SNP [dm6]	T	C	5.683e^-5	0.872	INTRON tinc
3R	13676511	3R_13676511_SNP [dm3] 3R_17850789_SNP [dm6]	T	A	5.683e^-5	0.872	INTRON tinc
3R	13676512	3R_13676512_SNP [dm3] 3R_17850790_SNP [dm6]	G	C	5.683e^-5	0.872	INTRON tinc
3R	13676514	3R_13676514_DEL [dm3] 3R_17850792_DEL [dm6]	AGAAGAG	TT	5.683e^-5	0.872	INTRON tinc
3R	13676532	3R_13676532_SNP [dm3] 3R_17850810_SNP [dm6]	G	T	5.683e^-5	0.872	INTRON tinc
3R	13676534	3R_13676534_SNP [dm3] 3R_17850812_SNP [dm6]	A	T	5.683e^-5	0.872	INTRON tinc
3R	13676536	3R_13676536_DEL [dm3] 3R_17850814_DEL [dm6]	AAAGA	A	5.683e^-5	0.872	INTRON tinc
3R	13676544	3R_13676544_SNP [dm3] 3R_17850822_SNP [dm6]	C	G	5.683e^-5	0.872	INTRON tinc
3R	13676547	3R_13676547_SNP [dm3] 3R_17850825_SNP [dm6]	A	T	5.683e^-5	0.872	INTRON tinc
3R	13676550	3R_13676550_SNP [dm3] 3R_17850828_SNP [dm6]	G	C	5.683e^-5	0.872	INTRON tinc
3R	13676554	3R_13676554_SNP [dm3] 3R_17850832_SNP [dm6]	G	C	5.683e^-5	0.872	INTRON tinc
3R	13676557	3R_13676557_MNP [dm3] 3R_17850835_MNP [dm6]	TTGA	AGCT	5.683e^-5	0.872	INTRON tinc
3R	13676562	3R_13676562_SNP [dm3] 3R_17850840_SNP [dm6]	C	T	5.683e^-5	0.872	INTRON tinc
3R	13676565	3R_13676565_SNP [dm3] 3R_17850843_SNP [dm6]	A	T	5.683e^-5	0.872	INTRON tinc
3R	13676569	3R_13676569_SNP [dm3] 3R_17850847_SNP [dm6]	C	T	5.683e^-5	0.872	INTRON tinc
3R	13676571	3R_13676571_SNP [dm3] 3R_17850849_SNP [dm6]	A	C	5.683e^-5	0.872	INTRON tinc
3R	13676573	3R_13676573_DEL [dm3] 3R_17850851_DEL [dm6]	GCCTTG	T	5.683e^-5	0.872	INTRON tinc
3R	13676583	3R_13676583_SNP [dm3] 3R_17850861_SNP [dm6]	C	A	5.683e^-5	0.872	INTRON tinc
3R	13676602	3R_13676602_SNP [dm3] 3R_17850880_SNP [dm6]	T	C	5.683e^-5	0.872	INTRON tinc
3R	13676610	3R_13676610_SNP [dm3] 3R_17850888_SNP [dm6]	A	T	5.683e^-5	0.872	INTRON tinc
3R	13677493	3R_13677493_DEL [dm3] 3R_17851771_DEL [dm6]	TTTTATTTA	T	5.683e^-5	0.872	INTRON tinc
3R	13676527	3R_13676527_SNP [dm3] 3R_17850805_SNP [dm6]	T	C	5.716e^-5	0.872	INTRON tinc
2L	9804509	2L_9804509_SNP [dm3] 2L_9804509_SNP [dm6]	C	T	5.899e^-5	0.872	INTRON nAChRalpha6
X	2090363	X_2090363_SNP [dm3] X_2196330_SNP [dm6]	T	G	5.918e^-5	0.872	INTRON Mct1
3R	27491917	3R_27491917_SNP [dm3] 3R_31666195_SNP [dm6]	C	T	5.930e^-5	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24106985	3R_24106985_SNP [dm3] 3R_28281263_SNP [dm6]	A	G	6.004e^-5	0.872	INTERGENIC
2L	12963897	2L_12963897_SNP [dm3] 2L_12963897_SNP [dm6]	A	G	6.107e^-5	0.872	INTERGENIC
3R	13676531	3R_13676531_SNP [dm3] 3R_17850809_SNP [dm6]	A	T	6.151e^-5	0.872	INTRON tinc
3L	4025803	3L_4025803_SNP [dm3] 3L_4025803_SNP [dm6]	A	G	6.169e^-5	0.872	UTR_5_PRIME CG11594 UPSTREAM CG11594 & 1 other INTRON CG11594
2L	5453285	2L_5453285_SNP [dm3] 2L_5453285_SNP [dm6]	G	A	6.173e^-5	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	8353731	3L_8353731_SNP [dm3] 3L_8360631_SNP [dm6]	A	T	6.274e^-5	0.872	UPSTREAM Idh INTRON Idh	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4366756	3R_4366756_SNP [dm3] 3R_8541034_SNP [dm6]	T	G	6.277e^-5	0.872	INTERGENIC
3R	24561001	3R_24561001_SNP [dm3] 3R_28735279_SNP [dm6]	C	A	6.593e^-5	0.872	DOWNSTREAM htt INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	13677663	3R_13677663_SNP [dm3] 3R_17851941_SNP [dm6]	C	T	6.671e^-5	0.872	INTRON tinc
3R	13677672	3R_13677672_SNP [dm3] 3R_17851950_SNP [dm6]	G	A	6.671e^-5	0.872	INTRON tinc
2L	4924014	2L_4924014_SNP [dm3] 2L_4924014_SNP [dm6]	A	G	6.777e^-5	0.872	INTRON hoe1
2L	4924018	2L_4924018_SNP [dm3] 2L_4924018_SNP [dm6]	T	C	6.777e^-5	0.872	INTRON hoe1
X	15890744	X_15890744_SNP [dm3] X_15996711_SNP [dm6]	A	C	6.806e^-5	0.872	UPSTREAM CG8939 DOWNSTREAM exd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5489926	2R_5489926_SNP [dm3] 2R_9602421_SNP [dm6]	A	G	6.886e^-5	0.872	SYNONYMOUS_CODING CG30339 INTRON CG1902
2L	13555054	2L_13555054_SNP [dm3] 2L_13555054_SNP [dm6]	C	T	6.912e^-5	0.872	INTRON kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15781909	3L_15781909_SNP [dm3] 3L_15788809_SNP [dm6]	T	G	7.079e^-5	0.872	INTERGENIC
2L	15044696	2L_15044696_SNP [dm3] 2L_15044696_SNP [dm6]	T	A	7.229e^-5	0.872	DOWNSTREAM ck INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	15044703	2L_15044703_SNP [dm3] 2L_15044703_SNP [dm6]	C	T	7.229e^-5	0.872	DOWNSTREAM ck INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	18016286	3L_18016286_SNP [dm3] 3L_18023186_SNP [dm6]	T	A	7.239e^-5	0.872	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3766430	2L_3766430_SNP [dm3] 2L_3766430_SNP [dm6]	G	C	7.318e^-5	0.872	NON_SYNONYMOUS_CODING CG43707 START_GAINED CG43707 UTR_5_PRIME CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
3L	15777948	3L_15777948_SNP [dm3] 3L_15784848_SNP [dm6]	C	A	7.407e^-5	0.872	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6865395	2L_6865395_SNP [dm3] 2L_6865395_SNP [dm6]	G	T	7.422e^-5	0.872	INTRON Nha1
2L	4428012	2L_4428012_SNP [dm3] 2L_4428012_SNP [dm6]	G	T	7.443e^-5	0.872	INTRON CG15431
2L	1732430	2L_1732430_SNP [dm3] 2L_1732430_SNP [dm6]	T	C	7.461e^-5	0.872	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1738941	2L_1738941_SNP [dm3] 2L_1738941_SNP [dm6]	C	A	7.462e^-5	0.872	INTRON CG17646
2L	1740503	2L_1740503_SNP [dm3] 2L_1740503_SNP [dm6]	G	C	7.462e^-5	0.872	INTRON CG17646
2L	1741263	2L_1741263_SNP [dm3] 2L_1741263_SNP [dm6]	T	A	7.462e^-5	0.872	INTRON CG17646
3L	12020073	3L_12020073_SNP [dm3] 3L_12026973_SNP [dm6]	G	C	7.730e^-5	0.872	UPSTREAM CR43994 INTRON rols
2R	15491343	2R_15491343_SNP [dm3] 2R_19603838_SNP [dm6]	C	A	7.738e^-5	0.872	DOWNSTREAM CR44474 INTRON sm EXON CR44473
3R	13663235	3R_13663235_SNP [dm3] 3R_17837513_SNP [dm6]	A	G	7.752e^-5	0.872	INTRON tinc
2R	6871257	2R_6871257_SNP [dm3] 2R_10983752_SNP [dm6]	T	C	7.837e^-5	0.872	INTRON luna
3L	11267800	3L_11267800_SNP [dm3] 3L_11274700_SNP [dm6]	T	G	7.840e^-5	0.872	UPSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4892318	2L_4892318_SNP [dm3] 2L_4892318_SNP [dm6]	C	A	8.108e^-5	0.872	UTR_5_PRIME CG3036 UPSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2R	18678247	2R_18678247_SNP [dm3] 2R_22790742_SNP [dm6]	G	C	8.269e^-5	0.872	INTRON CG42260
2L	1732395	2L_1732395_SNP [dm3] 2L_1732395_SNP [dm6]	T	C	8.297e^-5	0.872	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3006448	3L_3006448_SNP [dm3] 3L_3006448_SNP [dm6]	C	A	8.323e^-5	0.872	INTRON FMRFaR
2R	11987569	2R_11987569_SNP [dm3] 2R_16100064_SNP [dm6]	G	A	8.402e^-5	0.872	SYNONYMOUS_CODING CG8414 DOWNSTREAM mRpL34	TF binding site mE1_TFBS_sens
2L	21780230	2L_21780230_SNP [dm3] 2L_21780230_SNP [dm6]	A	T	8.422e^-5	0.872	INTRON CG31612
2R	18433178	2R_18433178_DEL [dm3] 2R_22545673_DEL [dm6]	AGATCGCAACTTTCTATAAT...	A	8.458e^-5	0.872	INTRON px	TF binding site BDTNP1_TFBS_dl
2R	7037721	2R_7037721_SNP [dm3] 2R_11150216_SNP [dm6]	A	G	8.508e^-5	0.872	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1742131	2L_1742131_SNP [dm3] 2L_1742131_SNP [dm6]	A	T	8.607e^-5	0.872	INTRON CG17646	TF binding site mE1_TFBS_chinmo
2R	10661664	2R_10661664_SNP [dm3] 2R_14774159_SNP [dm6]	G	C	8.632e^-5	0.872	INTRON kn	TF binding site mE1_TFBS_cad
3L	8323669	3L_8323669_SNP [dm3] 3L_8330569_SNP [dm6]	A	C	8.634e^-5	0.872	DOWNSTREAM CG34462 INTERGENIC
2R	7206834	2R_7206834_SNP [dm3] 2R_11319329_SNP [dm6]	G	T	8.725e^-5	0.872	UPSTREAM nompA DOWNSTREAM Or47b INTERGENIC
2L	11609752	2L_11609752_SNP [dm3] 2L_11609752_SNP [dm6]	T	C	8.730e^-5	0.872	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
X	9781867	X_9781867_SNP [dm3] X_9887834_SNP [dm6]	T	C	8.775e^-5	0.872	DOWNSTREAM CG15249 INTERGENIC
X	5783889	X_5783889_SNP [dm3] X_5889856_SNP [dm6]	G	A	8.854e^-5	0.872	INTRON CR45668	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	1367110	2R_1367110_SNP [dm3] 2R_5479605_SNP [dm6]	A	G	8.906e^-5	0.872	INTRON CG30440	transposable element FlyBase
3L	7922102	3L_7922102_SNP [dm3] 3L_7929002_SNP [dm6]	G	A	8.932e^-5	0.872	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12722020	3L_12722020_SNP [dm3] 3L_12728920_SNP [dm6]	A	G	8.963e^-5	0.872	INTERGENIC
3R	13676407	3R_13676407_INS [dm3] 3R_17850685_INS [dm6]	A	ATTATA	9.148e^-5	0.872	INTRON tinc
3R	13676414	3R_13676414_SNP [dm3] 3R_17850692_SNP [dm6]	C	T	9.148e^-5	0.872	INTRON tinc
3R	13677006	3R_13677006_SNP [dm3] 3R_17851284_SNP [dm6]	A	T	9.148e^-5	0.872	INTRON tinc
3R	13677404	3R_13677404_SNP [dm3] 3R_17851682_SNP [dm6]	C	A	9.148e^-5	0.872	INTRON tinc
2L	1732431	2L_1732431_SNP [dm3] 2L_1732431_SNP [dm6]	T	C	9.229e^-5	0.872	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23822251	3R_23822251_INS [dm3] 3R_27996529_INS [dm6]	T	TAT	9.301e^-5	0.872	INTERGENIC
3L	8187946	3L_8187946_SNP [dm3] 3L_8194846_SNP [dm6]	C	T	9.474e^-5	0.872	INTRON MED24
2L	10509634	2L_10509634_SNP [dm3] 2L_10509634_SNP [dm6]	A	G	9.513e^-5	0.872	SYNONYMOUS_CODING CG7384	TF binding site mE1_TFBS_cad
2L	18685678	2L_18685678_SNP [dm3] 2L_18685678_SNP [dm6]	C	T	9.548e^-5	0.872	SYNONYMOUS_CODING msl-1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15000052	2L_15000052_SNP [dm3] 2L_15000052_SNP [dm6]	T	C	9.714e^-5	0.872	INTERGENIC
2L	7678995	2L_7678995_SNP [dm3] 2L_7678995_SNP [dm6]	T	G	9.783e^-5	0.872	INTRON Myo28B1
2R	11932543	2R_11932543_SNP [dm3] 2R_16045038_SNP [dm6]	A	C	9.887e^-5	0.872	INTRON SP2353
2L	1741902	2L_1741902_SNP [dm3] 2L_1741902_SNP [dm6]	A	C	9.895e^-5	0.872	SYNONYMOUS_CODING CG17646	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3914806	3R_3914806_SNP [dm3] 3R_8089084_SNP [dm6]	C	T	9.981e^-5	0.872	SYNONYMOUS_CODING CG7910 UPSTREAM CR44330	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9355282	2R_9355282_SNP [dm3] 2R_13467777_SNP [dm6]	G	A	9.999e^-5	0.872	INTRON arr
3L	9935875	3L_9935875_SNP [dm3] 3L_9942775_SNP [dm6]	A	G	1.006e^-4	0.872	INTRON CG34356
3L	9935941	3L_9935941_SNP [dm3] 3L_9942841_SNP [dm6]	T	A	1.006e^-4	0.872	INTRON CG34356
3L	18016237	3L_18016237_SNP [dm3] 3L_18023137_SNP [dm6]	G	A	1.008e^-4	0.872	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	13262572	2L_13262572_SNP [dm3] 2L_13262572_SNP [dm6]	C	T	1.008e^-4	0.872	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
3R	24046778	3R_24046778_SNP [dm3] 3R_28221056_SNP [dm6]	T	G	1.017e^-4	0.872	INTRON CG34354
3R	13677161	3R_13677161_SNP [dm3] 3R_17851439_SNP [dm6]	A	G	1.022e^-4	0.872	INTRON tinc
3R	8480473	3R_8480473_SNP [dm3] 3R_12654751_SNP [dm6]	C	G	1.028e^-4	0.872	UTR_5_PRIME CG6225 INTRON CG6225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	685868	3L_685868_SNP [dm3] 3L_685868_SNP [dm6]	A	C	1.031e^-4	0.872	UPSTREAM ebd1 DOWNSTREAM CG3344 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15095364	2R_15095364_SNP [dm3] 2R_19207859_SNP [dm6]	G	C	1.034e^-4	0.872	INTRON hppy
3L	17769988	3L_17769988_SNP [dm3] 3L_17776888_SNP [dm6]	C	T	1.048e^-4	0.872	INTERGENIC
2R	6083949	2R_6083949_SNP [dm3] 2R_10196444_SNP [dm6]	C	A	1.050e^-4	0.872	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8568401	3L_8568401_SNP [dm3] 3L_8575301_SNP [dm6]	G	A	1.050e^-4	0.872	SYNONYMOUS_CODING CG6638 DOWNSTREAM rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2740357	2L_2740357_INS [dm3] 2L_2740357_INS [dm6]	A	AA	1.052e^-4	0.872	UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3R	15150547	3R_15150547_SNP [dm3] 3R_19324825_SNP [dm6]	A	T	1.054e^-4	0.872	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15781887	3L_15781887_DEL [dm3] 3L_15788787_DEL [dm6]	CC	C	1.061e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	3562653	3L_3562653_SNP [dm3] 3L_3562653_SNP [dm6]	T	C	1.073e^-4	0.872	INTRON Eip63E
3L	3562793	3L_3562793_SNP [dm3] 3L_3562793_SNP [dm6]	T	A	1.073e^-4	0.872	INTRON Eip63E
3L	3562839	3L_3562839_SNP [dm3] 3L_3562839_SNP [dm6]	G	A	1.073e^-4	0.872	INTRON Eip63E
3L	8425626	3L_8425626_SNP [dm3] 3L_8432526_SNP [dm6]	T	C	1.073e^-4	0.872	UTR_3_PRIME Unr DOWNSTREAM Unr & 1 other
3L	11532565	3L_11532565_SNP [dm3] 3L_11539465_SNP [dm6]	G	C	1.077e^-4	0.872	INTRON Mob2
2R	16399931	2R_16399931_SNP [dm3] 2R_20512426_SNP [dm6]	C	T	1.077e^-4	0.872	DOWNSTREAM CR44648 & 2 others INTERGENIC
3L	6898990	3L_6898990_SNP [dm3] 3L_6905890_SNP [dm6]	G	A	1.079e^-4	0.872	INTERGENIC
3L	1439866	3L_1439866_SNP [dm3] 3L_1439866_SNP [dm6]	G	T	1.083e^-4	0.872	INTRON Ptp61F
2R	13206885	2R_13206885_SNP [dm3] 2R_17319380_SNP [dm6]	T	C	1.089e^-4	0.872	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12550321	2L_12550321_SNP [dm3] 2L_12550321_SNP [dm6]	A	C	1.094e^-4	0.872	INTERGENIC
3R	27492090	3R_27492090_SNP [dm3] 3R_31666368_SNP [dm6]	G	A	1.095e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	27498955	3R_27498955_SNP [dm3] 3R_31673233_SNP [dm6]	G	T	1.095e^-4	0.872	INTRON CG1815
3R	27524320	3R_27524320_SNP [dm3] 3R_31698598_SNP [dm6]	G	C	1.095e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	27547318	3R_27547318_SNP [dm3] 3R_31721596_SNP [dm6]	G	A	1.095e^-4	0.872	INTRON ttk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12391350	3L_12391350_SNP [dm3] 3L_12398250_SNP [dm6]	T	A	1.101e^-4	0.872	SYNONYMOUS_CODING CG32104
3L	12391359	3L_12391359_SNP [dm3] 3L_12398259_SNP [dm6]	T	G	1.101e^-4	0.872	SYNONYMOUS_CODING CG32104
3L	20409128	3L_20409128_SNP [dm3] 3L_20416028_SNP [dm6]	T	A	1.109e^-4	0.872	INTRON zye
2R	16634169	2R_16634169_SNP [dm3] 2R_20746664_SNP [dm6]	G	A	1.128e^-4	0.872	INTRON dpr
3R	25492132	3R_25492132_SNP [dm3] 3R_29666410_SNP [dm6]	A	T	1.149e^-4	0.872	DOWNSTREAM ppk20 INTRON ppk21	TF binding site mE1_TFBS_HSA
2L	1738297	2L_1738297_SNP [dm3] 2L_1738297_SNP [dm6]	A	G	1.155e^-4	0.872	INTRON CG17646	TF binding site mE1_TFBS_Trl
2L	2677651	2L_2677651_SNP [dm3] 2L_2677651_SNP [dm6]	G	A	1.155e^-4	0.872	UPSTREAM CG31690 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25191901	3R_25191901_INS [dm3] 3R_29366179_INS [dm6]	A	AGTCCCA	1.157e^-4	0.872	INTERGENIC
3R	3914008	3R_3914008_SNP [dm3] 3R_8088286_SNP [dm6]	T	G	1.163e^-4	0.872	SYNONYMOUS_CODING CG7910
2L	7265910	2L_7265910_SNP [dm3] 2L_7265910_SNP [dm6]	T	G	1.180e^-4	0.872	INTRON Wnt4	TF binding site BDTNP1_TFBS_twi
2R	5976404	2R_5976404_SNP [dm3] 2R_10088899_SNP [dm6]	G	A	1.182e^-4	0.872	INTRON CG2269
3L	6626943	3L_6626943_SNP [dm3] 3L_6633843_SNP [dm6]	T	A	1.193e^-4	0.872	SYNONYMOUS_CODING GluRIA
2L	3466284	2L_3466284_SNP [dm3] 2L_3466284_SNP [dm6]	T	A	1.194e^-4	0.872	UTR_5_PRIME Pdsw UPSTREAM msl-2 INTRON Pdsw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9911984	3L_9911984_SNP [dm3] 3L_9918884_SNP [dm6]	A	G	1.206e^-4	0.872	INTRON CG34356
2L	1744172	2L_1744172_SNP [dm3] 2L_1744172_SNP [dm6]	G	A	1.226e^-4	0.872	INTRON CG17646
2L	13138083	2L_13138083_SNP [dm3] 2L_13138083_SNP [dm6]	T	C	1.233e^-4	0.872	INTERGENIC
X	2098533	X_2098533_SNP [dm3] X_2204500_SNP [dm6]	T	C	1.238e^-4	0.872	UPSTREAM CG18031 INTRON Mct1	TF binding site mE1_TFBS_chinmo
3L	11267784	3L_11267784_DEL [dm3] 3L_11274684_DEL [dm6]	TT	T	1.243e^-4	0.872	UPSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16031023	2R_16031023_SNP [dm3] 2R_20143518_SNP [dm6]	C	T	1.246e^-4	0.872	INTERGENIC
2R	14212019	2R_14212019_SNP [dm3] 2R_18324514_SNP [dm6]	A	G	1.259e^-4	0.872	INTRON sbb
3R	27536248	3R_27536248_SNP [dm3] 3R_31710526_SNP [dm6]	A	C	1.261e^-4	0.872	DOWNSTREAM CR34046 INTERGENIC	enhancer mE1_CBP_Enhancers
X	20760366	X_20760366_SNP [dm3] X_20889339_SNP [dm6]	A	G	1.272e^-4	0.872	INTRON shakB
3R	11102475	3R_11102475_SNP [dm3] 3R_15276753_SNP [dm6]	G	C	1.277e^-4	0.872	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	13206496	2R_13206496_SNP [dm3] 2R_17318991_SNP [dm6]	A	C	1.277e^-4	0.872	INTRON mbl
2L	6842963	2L_6842963_SNP [dm3] 2L_6842963_SNP [dm6]	G	T	1.279e^-4	0.872	INTERGENIC
3R	5956846	3R_5956846_SNP [dm3] 3R_10131124_SNP [dm6]	C	T	1.285e^-4	0.872	INTRON tws
X	13427965	X_13427965_SNP [dm3] X_13533932_SNP [dm6]	A	T	1.307e^-4	0.872	UPSTREAM CG15756 INTERGENIC
3R	26497577	3R_26497577_SNP [dm3] 3R_30671855_SNP [dm6]	A	T	1.309e^-4	0.872	INTERGENIC
2L	4076089	2L_4076089_SNP [dm3] 2L_4076089_SNP [dm6]	G	A	1.309e^-4	0.872	UPSTREAM CR44984 INTRON ed
2L	1743619	2L_1743619_SNP [dm3] 2L_1743619_SNP [dm6]	T	G	1.311e^-4	0.872	INTRON CG17646
2R	8443282	2R_8443282_SNP [dm3] 2R_12555777_SNP [dm6]	G	A	1.318e^-4	0.872	INTRON fra
3L	833612	3L_833612_SNP [dm3] 3L_833612_SNP [dm6]	C	G	1.320e^-4	0.872	UPSTREAM snoRNA:Psi28S-3308 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25497004	3R_25497004_SNP [dm3] 3R_29671282_SNP [dm6]	G	C	1.326e^-4	0.872	UPSTREAM Obp99a DOWNSTREAM ppk30 INTRON ppk30	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20740414	X_20740414_SNP [dm3] X_20869387_SNP [dm6]	T	A	1.332e^-4	0.872	UTR_5_PRIME CG1314 INTRON shakB
X	20740589	X_20740589_SNP [dm3] X_20869562_SNP [dm6]	C	T	1.332e^-4	0.872	UPSTREAM CG1314 INTRON shakB
3L	3869328	3L_3869328_SNP [dm3] 3L_3869328_SNP [dm6]	G	A	1.333e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	2291813	X_2291813_SNP [dm3] X_2397780_SNP [dm6]	T	C	1.335e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr mE1_TFBS_sens
2R	4339540	2R_4339540_SNP [dm3] 2R_8452035_SNP [dm6]	G	A	1.335e^-4	0.872	UPSTREAM Mal-A1 INTERGENIC
2L	4892215	2L_4892215_SNP [dm3] 2L_4892215_SNP [dm6]	C	T	1.359e^-4	0.872	START_GAINED CG3036 UTR_5_PRIME CG3036 UPSTREAM CR45716 DOWNSTREAM CG15625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	22953238	3R_22953238_SNP [dm3] 3R_27127516_SNP [dm6]	G	C	1.361e^-4	0.872	NON_SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1742051	2L_1742051_SNP [dm3] 2L_1742051_SNP [dm6]	G	A	1.361e^-4	0.872	SYNONYMOUS_CODING CG17646	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19213272	3R_19213272_SNP [dm3] 3R_23387550_SNP [dm6]	T	A	1.375e^-4	0.872	DOWNSTREAM CG31515 INTERGENIC
2L	13535750	2L_13535750_SNP [dm3] 2L_13535750_SNP [dm6]	C	T	1.377e^-4	0.872	UTR_5_PRIME CG15638 INTRON B4
X	20627820	X_20627820_SNP [dm3] X_20756793_SNP [dm6]	G	T	1.379e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	3997041	3R_3997041_SNP [dm3] 3R_8171319_SNP [dm6]	T	C	1.386e^-4	0.872	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9557001	2R_9557001_SNP [dm3] 2R_13669496_SNP [dm6]	A	G	1.391e^-4	0.872	NON_SYNONYMOUS_CODING CG18368 INTRON fas
X	9280685	X_9280685_SNP [dm3] X_9386652_SNP [dm6]	G	A	1.407e^-4	0.872	INTRON mgl
2R	17322122	2R_17322122_SNP [dm3] 2R_21434617_SNP [dm6]	G	A	1.412e^-4	0.872	INTRON Sdc
2R	6157436	2R_6157436_DEL [dm3] 2R_10269931_DEL [dm6]	TG	T	1.413e^-4	0.872	DOWNSTREAM CG12910 INTRON CAP
2R	6954479	2R_6954479_INS [dm3] 2R_11066974_INS [dm6]	T	TC	1.419e^-4	0.872	INTRON luna
2R	6954482	2R_6954482_DEL [dm3] 2R_11066977_DEL [dm6]	CT	C	1.419e^-4	0.872	INTRON luna
2R	6954500	2R_6954500_INS [dm3] 2R_11066995_INS [dm6]	A	AA	1.419e^-4	0.872	INTRON luna
X	5610111	X_5610111_SNP [dm3] X_5716078_SNP [dm6]	T	C	1.423e^-4	0.872	UPSTREAM CG33080 INTRON CG33080
X	2102846	X_2102846_SNP [dm3] X_2208813_SNP [dm6]	G	A	1.432e^-4	0.872	UPSTREAM msta INTRON msta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11100371	2L_11100371_SNP [dm3] 2L_11100371_SNP [dm6]	C	A	1.433e^-4	0.872	SYNONYMOUS_CODING Ge-1 DOWNSTREAM Reps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11100971	2L_11100971_SNP [dm3] 2L_11100971_SNP [dm6]	C	T	1.433e^-4	0.872	UTR_3_PRIME Reps UPSTREAM Ge-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	8490943	2R_8490943_SNP [dm3] 2R_12603438_SNP [dm6]	A	C	1.442e^-4	0.872	INTRON Amph
3L	16307807	3L_16307807_SNP [dm3] 3L_16314707_SNP [dm6]	T	C	1.445e^-4	0.872	SYNONYMOUS_CODING CG13062	TF binding site mE1_TFBS_HSA
2R	2757062	2R_2757062_SNP [dm3] 2R_6869557_SNP [dm6]	A	G	1.445e^-4	0.872	INTRON coro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	2757165	2R_2757165_SNP [dm3] 2R_6869660_SNP [dm6]	T	G	1.445e^-4	0.872	INTRON coro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9404564	3L_9404564_SNP [dm3] 3L_9411464_SNP [dm6]	G	T	1.445e^-4	0.872	UPSTREAM CG4022 INTRON CG3689	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10555648	2R_10555648_SNP [dm3] 2R_14668143_SNP [dm6]	A	T	1.476e^-4	0.872	UPSTREAM CG12866 INTERGENIC
3R	20111186	3R_20111186_SNP [dm3] 3R_24285464_SNP [dm6]	T	C	1.484e^-4	0.872	INTRON CG6356	TF binding site mE1_TFBS_HSA
3L	3562659	3L_3562659_SNP [dm3] 3L_3562659_SNP [dm6]	T	A	1.485e^-4	0.872	INTRON Eip63E
3R	9290848	3R_9290848_SNP [dm3] 3R_13465126_SNP [dm6]	T	C	1.485e^-4	0.872	UPSTREAM mir-252 DOWNSTREAM CG14372 & 1 other INTRON CR17025
3R	11682345	3R_11682345_SNP [dm3] 3R_15856623_SNP [dm6]	C	A	1.491e^-4	0.872	INTRON Hmt-1	TF binding site mE1_TFBS_sens
2L	11609612	2L_11609612_SNP [dm3] 2L_11609612_SNP [dm6]	A	G	1.496e^-4	0.872	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11609627	2L_11609627_SNP [dm3] 2L_11609627_SNP [dm6]	G	A	1.496e^-4	0.872	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11609928	2L_11609928_SNP [dm3] 2L_11609928_SNP [dm6]	A	C	1.496e^-4	0.872	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_inv
3R	17851479	3R_17851479_SNP [dm3] 3R_22025757_SNP [dm6]	G	A	1.504e^-4	0.872	UPSTREAM CG6028 DOWNSTREAM Cchl INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8252364	3L_8252364_SNP [dm3] 3L_8259264_SNP [dm6]	T	A	1.505e^-4	0.872	INTRON Dscam4
2R	9355287	2R_9355287_SNP [dm3] 2R_13467782_SNP [dm6]	A	G	1.506e^-4	0.872	INTRON arr
2L	1738279	2L_1738279_SNP [dm3] 2L_1738279_SNP [dm6]	T	A	1.509e^-4	0.872	INTRON CG17646	TF binding site mE1_TFBS_Trl
2L	6012650	2L_6012650_SNP [dm3] 2L_6012650_SNP [dm6]	G	A	1.523e^-4	0.872	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
2L	495512	2L_495512_SNP [dm3] 2L_495512_SNP [dm6]	G	T	1.528e^-4	0.872	INTRON ush
2L	9692862	2L_9692862_SNP [dm3] 2L_9692862_SNP [dm6]	A	T	1.534e^-4	0.872	INTRON Pka-C1
3R	27525328	3R_27525328_SNP [dm3] 3R_31699606_SNP [dm6]	C	G	1.537e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12334108	3R_12334108_SNP [dm3] 3R_16508386_SNP [dm6]	C	G	1.549e^-4	0.872	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	15843439	X_15843439_INS [dm3] X_15949406_INS [dm6]	T	TTATATCATAT...	1.558e^-4	0.872	INTRON mmd	TF binding site BDTNP1_TFBS_dl
X	15843457	X_15843457_SNP [dm3] X_15949424_SNP [dm6]	G	T	1.558e^-4	0.872	INTRON mmd	TF binding site BDTNP1_TFBS_dl
2R	9243226	2R_9243226_SNP [dm3] 2R_13355721_SNP [dm6]	C	G	1.558e^-4	0.872	INTERGENIC
3R	11102117	3R_11102117_SNP [dm3] 3R_15276395_SNP [dm6]	C	G	1.583e^-4	0.872	NON_SYNONYMOUS_CODING CG4338 DOWNSTREAM MRG15	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102352	3R_11102352_SNP [dm3] 3R_15276630_SNP [dm6]	G	A	1.583e^-4	0.872	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102400	3R_11102400_SNP [dm3] 3R_15276678_SNP [dm6]	A	G	1.583e^-4	0.872	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11107588	3R_11107588_SNP [dm3] 3R_15281866_SNP [dm6]	A	T	1.583e^-4	0.872	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11107595	3R_11107595_SNP [dm3] 3R_15281873_SNP [dm6]	G	T	1.583e^-4	0.872	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11107597	3R_11107597_SNP [dm3] 3R_15281875_SNP [dm6]	A	G	1.583e^-4	0.872	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13058490	2L_13058490_SNP [dm3] 2L_13058490_SNP [dm6]	C	G	1.594e^-4	0.872	INTRON CG9932
2R	8846890	2R_8846890_DEL [dm3] 2R_12959385_DEL [dm6]	AT	A	1.595e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	1267680	3L_1267680_SNP [dm3] 3L_1267680_SNP [dm6]	A	G	1.603e^-4	0.872	INTRON CG9134
X	5444217	X_5444217_SNP [dm3] X_5550184_SNP [dm6]	A	T	1.611e^-4	0.872	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	24722121	3R_24722121_SNP [dm3] 3R_28896399_SNP [dm6]	C	A	1.618e^-4	0.872	INTRON Doa
3R	24721732	3R_24721732_SNP [dm3] 3R_28896010_SNP [dm6]	A	T	1.619e^-4	0.872	INTRON Doa
2L	20362255	2L_20362255_SNP [dm3] 2L_20362255_SNP [dm6]	C	A	1.626e^-4	0.872	SYNONYMOUS_CODING RtGEF DOWNSTREAM RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad
3L	482487	3L_482487_INS [dm3] 3L_482487_INS [dm6]	C	CGCC	1.626e^-4	0.872	INTRON klar
2L	1741255	2L_1741255_DEL [dm3] 2L_1741255_DEL [dm6]	AA	A	1.627e^-4	0.872	INTRON CG17646
X	19357680	X_19357680_INS [dm3] X_19463647_INS [dm6]	C	GAGGTATGAAGTATGA...	1.631e^-4	0.872	INTRON kek5
X	19357683	X_19357683_INS [dm3] X_19463650_INS [dm6]	A	AGCATTCAAG	1.631e^-4	0.872	INTRON kek5
X	3361533	X_3361533_SNP [dm3] X_3467500_SNP [dm6]	T	C	1.637e^-4	0.872	INTRON CR44999 & 1 other
3R	27597631	3R_27597631_DEL [dm3] 3R_31771909_DEL [dm6]	TT	T	1.642e^-4	0.872	UPSTREAM sip3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	709339	2L_709339_SNP [dm3] 2L_709339_SNP [dm6]	T	C	1.645e^-4	0.872	INTRON ds
2L	1741590	2L_1741590_SNP [dm3] 2L_1741590_SNP [dm6]	C	G	1.686e^-4	0.872	INTRON CG17646	TF binding site mE1_TFBS_chinmo
2L	1741189	2L_1741189_SNP [dm3] 2L_1741189_SNP [dm6]	G	A	1.702e^-4	0.872	INTRON CG17646
3L	686645	3L_686645_SNP [dm3] 3L_686645_SNP [dm6]	G	A	1.703e^-4	0.872	SYNONYMOUS_CODING CG3344	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3L	681113	3L_681113_SNP [dm3] 3L_681113_SNP [dm6]	T	C	1.707e^-4	0.872	SYNONYMOUS_CODING CG3386 UPSTREAM CG17129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2R	5489656	2R_5489656_SNP [dm3] 2R_9602151_SNP [dm6]	T	G	1.709e^-4	0.872	SYNONYMOUS_CODING CG30339 UPSTREAM CG30340 INTRON CG1902
2R	16434808	2R_16434808_SNP [dm3] 2R_20547303_SNP [dm6]	T	C	1.723e^-4	0.872	NON_SYNONYMOUS_CODING CG30148 DOWNSTREAM Obp57e
3L	12391188	3L_12391188_SNP [dm3] 3L_12398088_SNP [dm6]	T	A	1.746e^-4	0.872	SYNONYMOUS_CODING CG32104	TF binding site mE1_TFBS_HSA
3L	12391473	3L_12391473_SNP [dm3] 3L_12398373_SNP [dm6]	C	G	1.746e^-4	0.872	SYNONYMOUS_CODING CG32104
3R	17826014	3R_17826014_SNP [dm3] 3R_22000292_SNP [dm6]	T	G	1.754e^-4	0.872	INTRON Eip93F
3L	686629	3L_686629_SNP [dm3] 3L_686629_SNP [dm6]	A	G	1.754e^-4	0.872	SYNONYMOUS_CODING CG3344	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
X	19231814	X_19231814_SNP [dm3] X_19337781_SNP [dm6]	C	T	1.759e^-4	0.872	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	3766428	2L_3766428_SNP [dm3] 2L_3766428_SNP [dm6]	C	T	1.759e^-4	0.872	NON_SYNONYMOUS_CODING CG43707 UTR_5_PRIME CG43707 DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
3L	2582752	3L_2582752_SNP [dm3] 3L_2582752_SNP [dm6]	G	C	1.760e^-4	0.872	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16871780	2L_16871780_SNP [dm3] 2L_16871780_SNP [dm6]	A	G	1.760e^-4	0.872	INTRON CR31781
3R	19843612	3R_19843612_SNP [dm3] 3R_24017890_SNP [dm6]	G	A	1.762e^-4	0.872	INTRON KrT95D
3L	10806354	3L_10806354_SNP [dm3] 3L_10813254_SNP [dm6]	C	T	1.770e^-4	0.872	INTERGENIC
3R	26975435	3R_26975435_SNP [dm3] 3R_31149713_SNP [dm6]	G	T	1.779e^-4	0.872	INTRON Gycbeta100B
2R	9748251	2R_9748251_SNP [dm3] 2R_13860746_SNP [dm6]	A	C	1.794e^-4	0.872	SYNONYMOUS_CODING CG16935 DOWNSTREAM Uba3	TF binding site mE1_TFBS_cad
3L	13711118	3L_13711118_SNP [dm3] 3L_13718018_SNP [dm6]	C	T	1.798e^-4	0.872	INTRON bru-3
2L	1746161	2L_1746161_SNP [dm3] 2L_1746161_SNP [dm6]	C	A	1.807e^-4	0.872	INTRON CG17646
X	2100920	X_2100920_SNP [dm3] X_2206887_SNP [dm6]	T	C	1.816e^-4	0.872	INTRON msta
2R	18336138	2R_18336138_SNP [dm3] 2R_22448633_SNP [dm6]	A	G	1.820e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2109842	X_2109842_SNP [dm3] X_2215809_SNP [dm6]	T	C	1.823e^-4	0.872	SYNONYMOUS_CODING Vinc	TF binding site mE1_TFBS_chinmo
X	20759316	X_20759316_SNP [dm3] X_20888289_SNP [dm6]	C	G	1.830e^-4	0.872	INTRON shakB
X	20759317	X_20759317_SNP [dm3] X_20888290_SNP [dm6]	C	T	1.830e^-4	0.872	INTRON shakB
2L	11100317	2L_11100317_SNP [dm3] 2L_11100317_SNP [dm6]	T	C	1.833e^-4	0.872	SYNONYMOUS_CODING Ge-1 DOWNSTREAM Reps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3195037	2L_3195037_SNP [dm3] 2L_3195037_SNP [dm6]	A	T	1.853e^-4	0.872	INTRON CG34393
3L	3661496	3L_3661496_SNP [dm3] 3L_3661496_SNP [dm6]	T	C	1.858e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	495220	2L_495220_SNP [dm3] 2L_495220_SNP [dm6]	A	C	1.875e^-4	0.872	INTRON ush
2L	497404	2L_497404_SNP [dm3] 2L_497404_SNP [dm6]	T	A	1.875e^-4	0.872	INTRON ush
X	20628539	X_20628539_SNP [dm3] X_20757512_SNP [dm6]	C	T	1.875e^-4	0.872	UPSTREAM CR44710 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20628541	X_20628541_SNP [dm3] X_20757514_SNP [dm6]	A	T	1.875e^-4	0.872	UPSTREAM CR44710 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20628571	X_20628571_SNP [dm3] X_20757544_SNP [dm6]	T	G	1.875e^-4	0.872	UPSTREAM CR44710 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20628588	X_20628588_SNP [dm3] X_20757561_SNP [dm6]	T	C	1.875e^-4	0.872	UPSTREAM CR44710 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8323678	3L_8323678_SNP [dm3] 3L_8330578_SNP [dm6]	A	C	1.888e^-4	0.872	DOWNSTREAM CG34462 INTERGENIC
2L	12197965	2L_12197965_SNP [dm3] 2L_12197965_SNP [dm6]	T	G	1.894e^-4	0.872	INTRON aret
X	2101397	X_2101397_SNP [dm3] X_2207364_SNP [dm6]	A	C	1.895e^-4	0.872	INTRON msta
3R	505477	3R_505477_SNP [dm3] 3R_4679755_SNP [dm6]	C	G	1.905e^-4	0.872	INTRON CG43427	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	7082503	3L_7082503_SNP [dm3] 3L_7089403_SNP [dm6]	T	C	1.909e^-4	0.872	UPSTREAM Cpr65Eb INTERGENIC
X	20759778	X_20759778_SNP [dm3] X_20888751_SNP [dm6]	C	T	1.920e^-4	0.872	INTRON shakB
2L	14002331	2L_14002331_SNP [dm3] 2L_14002331_SNP [dm6]	C	G	1.926e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1790662	2L_1790662_SNP [dm3] 2L_1790662_SNP [dm6]	A	G	1.937e^-4	0.872	SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
2L	4892227	2L_4892227_SNP [dm3] 2L_4892227_SNP [dm6]	A	G	1.947e^-4	0.872	START_GAINED CG3036 UTR_5_PRIME CG3036 UPSTREAM CR45716 DOWNSTREAM CG15625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	9751690	2R_9751690_SNP [dm3] 2R_13864185_SNP [dm6]	G	T	1.949e^-4	0.872	DOWNSTREAM shot & 1 other INTERGENIC
2R	9751692	2R_9751692_SNP [dm3] 2R_13864187_SNP [dm6]	C	T	1.949e^-4	0.872	DOWNSTREAM shot & 1 other INTERGENIC
3R	4367306	3R_4367306_SNP [dm3] 3R_8541584_SNP [dm6]	A	G	1.954e^-4	0.872	INTERGENIC
3L	15778236	3L_15778236_SNP [dm3] 3L_15785136_SNP [dm6]	C	T	1.954e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	1746603	2L_1746603_SNP [dm3] 2L_1746603_SNP [dm6]	G	T	1.955e^-4	0.872	INTRON CG17646
X	20739998	X_20739998_SNP [dm3] X_20868971_SNP [dm6]	C	T	1.972e^-4	0.872	SYNONYMOUS_CODING CG1314 INTRON shakB	TF binding site mE1_TFBS_sens
2L	12653065	2L_12653065_SNP [dm3] 2L_12653065_SNP [dm6]	C	T	1.990e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18428383	3L_18428383_SNP [dm3] 3L_18435283_SNP [dm6]	G	C	1.993e^-4	0.872	INTERGENIC
3L	6273807	3L_6273807_SNP [dm3] 3L_6280707_SNP [dm6]	A	G	2.004e^-4	0.872	INTERGENIC
3L	12391407	3L_12391407_SNP [dm3] 3L_12398307_SNP [dm6]	T	C	2.011e^-4	0.872	SYNONYMOUS_CODING CG32104
3L	12391409	3L_12391409_SNP [dm3] 3L_12398309_SNP [dm6]	C	T	2.011e^-4	0.872	NON_SYNONYMOUS_CODING CG32104
3L	12391410	3L_12391410_SNP [dm3] 3L_12398310_SNP [dm6]	G	A	2.011e^-4	0.872	SYNONYMOUS_CODING CG32104
2L	1740125	2L_1740125_SNP [dm3] 2L_1740125_SNP [dm6]	G	A	2.011e^-4	0.872	INTRON CG17646
X	13427964	X_13427964_SNP [dm3] X_13533931_SNP [dm6]	T	G	2.016e^-4	0.872	UPSTREAM CG15756 INTERGENIC
3L	9429327	3L_9429327_SNP [dm3] 3L_9436227_SNP [dm6]	G	A	2.019e^-4	0.872	SYNONYMOUS_CODING MTF-1 UPSTREAM CG42526	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5776215	2L_5776215_SNP [dm3] 2L_5776215_SNP [dm6]	G	A	2.035e^-4	0.872	INTRON CG9171
2R	20229460	2R_20229460_SNP [dm3] 2R_24341937_SNP [dm6]	T	G	2.047e^-4	0.872	UPSTREAM bs INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19627614	2R_19627614_SNP [dm3] 2R_23740091_SNP [dm6]	A	C	2.056e^-4	0.872	INTRON egl
2L	3996184	2L_3996184_SNP [dm3] 2L_3996184_SNP [dm6]	G	A	2.058e^-4	0.872	INTERGENIC
2L	3996194	2L_3996194_SNP [dm3] 2L_3996194_SNP [dm6]	G	A	2.058e^-4	0.872	INTERGENIC
X	15094166	X_15094166_SNP [dm3] X_15200133_SNP [dm6]	A	G	2.070e^-4	0.872	INTERGENIC
2L	1116825	2L_1116825_SNP [dm3] 2L_1116825_SNP [dm6]	C	T	2.072e^-4	0.872	INTRON Pino	TF binding site BDTNP1_TFBS_dl
2L	6935109	2L_6935109_SNP [dm3] 2L_6935109_SNP [dm6]	G	A	2.072e^-4	0.872	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
3L	11236592	3L_11236592_SNP [dm3] 3L_11243492_SNP [dm6]	A	G	2.072e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11236658	3L_11236658_SNP [dm3] 3L_11243558_SNP [dm6]	T	C	2.072e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11236689	3L_11236689_SNP [dm3] 3L_11243589_SNP [dm6]	A	G	2.072e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8251330	3L_8251330_SNP [dm3] 3L_8258230_SNP [dm6]	C	T	2.072e^-4	0.872	INTRON Dscam4
3L	10290786	3L_10290786_SNP [dm3] 3L_10297686_SNP [dm6]	G	A	2.079e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14268914	2R_14268914_SNP [dm3] 2R_18381409_SNP [dm6]	C	G	2.088e^-4	0.872	UTR_3_PRIME CG43202	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6052410	3L_6052410_SNP [dm3] 3L_6059310_SNP [dm6]	C	G	2.097e^-4	0.872	UPSTREAM CG6592 EXON CR45441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3L	10808752	3L_10808752_SNP [dm3] 3L_10815652_SNP [dm6]	C	G	2.101e^-4	0.872	UTR_3_PRIME CG42831 UPSTREAM CR45247
3L	2397384	3L_2397384_INS [dm3] 3L_2397384_INS [dm6]	T	TT	2.102e^-4	0.872	INTRON CG45186	TF binding site mE1_TFBS_inv
2L	1732416	2L_1732416_SNP [dm3] 2L_1732416_SNP [dm6]	T	G	2.117e^-4	0.872	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11609626	2L_11609626_SNP [dm3] 2L_11609626_SNP [dm6]	T	C	2.122e^-4	0.872	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24601343	3R_24601343_SNP [dm3] 3R_28775621_SNP [dm6]	G	A	2.124e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6039749	3R_6039749_SNP [dm3] 3R_10214027_SNP [dm6]	C	T	2.124e^-4	0.872	INTRON Syn
3R	6039758	3R_6039758_SNP [dm3] 3R_10214036_SNP [dm6]	A	T	2.124e^-4	0.872	INTRON Syn
3R	19214017	3R_19214017_SNP [dm3] 3R_23388295_SNP [dm6]	G	A	2.124e^-4	0.872	DOWNSTREAM CG31515 INTERGENIC	TF binding site mE1_TFBS_inv
2R	18155329	2R_18155329_DEL [dm3] 2R_22267824_DEL [dm6]	GGG	A	2.126e^-4	0.872	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	19055564	X_19055564_SNP [dm3] X_19161531_SNP [dm6]	T	C	2.149e^-4	0.872	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
3R	2210301	3R_2210301_SNP [dm3] 3R_6384579_SNP [dm6]	T	C	2.164e^-4	0.872	UTR_5_PRIME godzilla INTRON godzilla
3R	17647553	3R_17647553_SNP [dm3] 3R_21821831_SNP [dm6]	A	G	2.168e^-4	0.872	INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3300975	2R_3300975_SNP [dm3] 2R_7413470_SNP [dm6]	G	C	2.172e^-4	0.872	INTERGENIC
2R	11837377	2R_11837377_SNP [dm3] 2R_15949872_SNP [dm6]	C	T	2.179e^-4	0.872	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_chinmo
3L	8538769	3L_8538769_SNP [dm3] 3L_8545669_SNP [dm6]	C	A	2.183e^-4	0.872	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17024741	2L_17024741_SNP [dm3] 2L_17024741_SNP [dm6]	A	T	2.189e^-4	0.872	INTERGENIC
X	16116763	X_16116763_SNP [dm3] X_16222730_SNP [dm6]	T	C	2.189e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	18324177	3L_18324177_SNP [dm3] 3L_18331077_SNP [dm6]	A	G	2.212e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20515620	3R_20515620_SNP [dm3] 3R_24689898_SNP [dm6]	C	T	2.215e^-4	0.872	INTRON slo
3L	12391422	3L_12391422_SNP [dm3] 3L_12398322_SNP [dm6]	T	A	2.216e^-4	0.872	SYNONYMOUS_CODING CG32104
2L	9021845	2L_9021845_SNP [dm3] 2L_9021845_SNP [dm6]	G	A	2.231e^-4	0.872	INTERGENIC
X	13695452	X_13695452_SNP [dm3] X_13801419_SNP [dm6]	C	T	2.240e^-4	0.872	INTRON inaE
3R	25494529	3R_25494529_SNP [dm3] 3R_29668807_SNP [dm6]	G	A	2.249e^-4	0.872	NON_SYNONYMOUS_CODING ppk20 UPSTREAM ppk30	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8323170	2L_8323170_SNP [dm3] 2L_8323170_SNP [dm6]	T	A	2.255e^-4	0.872	INTRON CG7781
2L	12651207	2L_12651207_SNP [dm3] 2L_12651207_SNP [dm6]	C	T	2.291e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12651687	2L_12651687_SNP [dm3] 2L_12651687_SNP [dm6]	G	C	2.291e^-4	0.872	INTERGENIC
2L	12651929	2L_12651929_INS [dm3] 2L_12651929_INS [dm6]	A	ACACACGGCACACG...	2.291e^-4	0.872	INTERGENIC
2L	12652541	2L_12652541_SNP [dm3] 2L_12652541_SNP [dm6]	C	A	2.291e^-4	0.872	INTERGENIC
2L	12678055	2L_12678055_SNP [dm3] 2L_12678055_SNP [dm6]	A	G	2.291e^-4	0.872	UPSTREAM pdm2 INTRON pdm2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12680161	2L_12680161_SNP [dm3] 2L_12680161_SNP [dm6]	C	T	2.291e^-4	0.872	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	11100948	2L_11100948_SNP [dm3] 2L_11100948_SNP [dm6]	C	G	2.294e^-4	0.872	UPSTREAM Ge-1 DOWNSTREAM Reps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	18652346	2R_18652346_SNP [dm3] 2R_22764841_SNP [dm6]	C	T	2.313e^-4	0.872	UTR_3_PRIME CG13527 INTRON CG42260 & 1 other
3R	27488497	3R_27488497_SNP [dm3] 3R_31662775_SNP [dm6]	T	A	2.321e^-4	0.872	UTR_3_PRIME kek6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27498841	3R_27498841_SNP [dm3] 3R_31673119_SNP [dm6]	C	G	2.321e^-4	0.872	INTRON CG1815
2R	7525694	2R_7525694_SNP [dm3] 2R_11638189_SNP [dm6]	G	C	2.324e^-4	0.872	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15551267	2R_15551267_SNP [dm3] 2R_19663762_SNP [dm6]	C	T	2.334e^-4	0.872	DOWNSTREAM hrg & 1 other INTERGENIC
2R	15551276	2R_15551276_SNP [dm3] 2R_19663771_SNP [dm6]	C	T	2.334e^-4	0.872	DOWNSTREAM hrg & 1 other INTERGENIC
3R	25315787	3R_25315787_SNP [dm3] 3R_29490065_SNP [dm6]	C	A	2.334e^-4	0.872	NON_SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20935399	3R_20935399_SNP [dm3] 3R_25109677_SNP [dm6]	A	G	2.341e^-4	0.872	SYNONYMOUS_CODING CG13650 UPSTREAM CG34027
2L	1738288	2L_1738288_SNP [dm3] 2L_1738288_SNP [dm6]	T	C	2.346e^-4	0.872	INTRON CG17646	TF binding site mE1_TFBS_Trl
2L	12652373	2L_12652373_SNP [dm3] 2L_12652373_SNP [dm6]	C	A	2.353e^-4	0.872	INTERGENIC
2R	4359757	2R_4359757_SNP [dm3] 2R_8472252_SNP [dm6]	C	A	2.371e^-4	0.872	SYNONYMOUS_CODING Mal-A8 UPSTREAM Mal-A7
2R	14827134	2R_14827134_SNP [dm3] 2R_18939629_SNP [dm6]	A	G	2.388e^-4	0.872	INTRON sano
3L	686630	3L_686630_SNP [dm3] 3L_686630_SNP [dm6]	T	G	2.393e^-4	0.872	SYNONYMOUS_CODING CG3344	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
3L	686735	3L_686735_SNP [dm3] 3L_686735_SNP [dm6]	A	C	2.393e^-4	0.872	SYNONYMOUS_CODING CG3344	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	9670572	2R_9670572_SNP [dm3] 2R_13783067_SNP [dm6]	A	C	2.396e^-4	0.872	UPSTREAM CR43810 INTRON Cpr50Ca
3R	19213868	3R_19213868_DEL [dm3] 3R_23388146_DEL [dm6]	CTC	C	2.396e^-4	0.872	DOWNSTREAM CG31515 INTERGENIC	TF binding site mE1_TFBS_inv
2L	3828693	2L_3828693_SNP [dm3] 2L_3828693_SNP [dm6]	T	G	2.414e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9935848	3L_9935848_SNP [dm3] 3L_9942748_SNP [dm6]	T	C	2.418e^-4	0.872	INTRON CG34356
2R	6157376	2R_6157376_SNP [dm3] 2R_10269871_SNP [dm6]	T	G	2.431e^-4	0.872	DOWNSTREAM CG12910 INTRON CAP
2R	8846898	2R_8846898_SNP [dm3] 2R_12959393_SNP [dm6]	T	C	2.435e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	8188025	3L_8188025_SNP [dm3] 3L_8194925_SNP [dm6]	A	G	2.444e^-4	0.872	SYNONYMOUS_CODING MED24 DOWNSTREAM Ubc12
2L	14537627	2L_14537627_INS [dm3] 2L_14537627_INS [dm6]	T	TT	2.448e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	19957888	2R_19957888_SNP [dm3] 2R_24070365_SNP [dm6]	A	C	2.452e^-4	0.872	INTRON CG3209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15890798	X_15890798_SNP [dm3] X_15996765_SNP [dm6]	G	A	2.466e^-4	0.872	UPSTREAM CG8939 DOWNSTREAM exd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15890799	X_15890799_SNP [dm3] X_15996766_SNP [dm6]	T	G	2.466e^-4	0.872	UPSTREAM CG8939 DOWNSTREAM exd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7050490	2R_7050490_DEL [dm3] 2R_11162985_DEL [dm6]	TACCTCCTCT	T	2.474e^-4	0.872	INTRON shn & 1 other
3L	12722024	3L_12722024_SNP [dm3] 3L_12728924_SNP [dm6]	A	G	2.475e^-4	0.872	INTERGENIC
2R	11987674	2R_11987674_SNP [dm3] 2R_16100169_SNP [dm6]	A	G	2.477e^-4	0.872	SYNONYMOUS_CODING CG8414 DOWNSTREAM mRpL34	TF binding site mE1_TFBS_sens
X	2098912	X_2098912_SNP [dm3] X_2204879_SNP [dm6]	T	C	2.483e^-4	0.872	NON_SYNONYMOUS_CODING Mct1 DOWNSTREAM msta	TF binding site mE1_TFBS_chinmo
3R	14009210	3R_14009210_SNP [dm3] 3R_18183488_SNP [dm6]	C	A	2.487e^-4	0.872	UPSTREAM cdm DOWNSTREAM CG7208 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2431346	3L_2431346_DEL [dm3] 3L_2431346_DEL [dm6]	TT	T	2.492e^-4	0.872	INTRON CG45186
3L	15781891	3L_15781891_SNP [dm3] 3L_15788791_SNP [dm6]	A	G	2.504e^-4	0.872	INTERGENIC
3L	8539331	3L_8539331_SNP [dm3] 3L_8546231_SNP [dm6]	A	T	2.515e^-4	0.872	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15766088	3L_15766088_SNP [dm3] 3L_15772988_SNP [dm6]	G	C	2.515e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2870293	3R_2870293_SNP [dm3] 3R_7044571_SNP [dm6]	A	C	2.520e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	3045784	3L_3045784_SNP [dm3] 3L_3045784_SNP [dm6]	G	A	2.532e^-4	0.872	NON_SYNONYMOUS_CODING scramb2	TF binding site mE1_TFBS_cad
3L	4098009	3L_4098009_SNP [dm3] 3L_4098009_SNP [dm6]	C	T	2.537e^-4	0.872	INTRON CG14995	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	4098014	3L_4098014_SNP [dm3] 3L_4098014_SNP [dm6]	G	C	2.537e^-4	0.872	INTRON CG14995	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18941300	2R_18941300_SNP [dm3] 2R_23053777_SNP [dm6]	T	A	2.560e^-4	0.872	INTERGENIC
2L	14999145	2L_14999145_SNP [dm3] 2L_14999145_SNP [dm6]	C	A	2.577e^-4	0.872	INTERGENIC
X	12057381	X_12057381_SNP [dm3] X_12163348_SNP [dm6]	T	A	2.578e^-4	0.872	INTRON Ten-a
2L	5782370	2L_5782370_SNP [dm3] 2L_5782370_SNP [dm6]	T	A	2.581e^-4	0.872	INTRON CG9171
2R	8846940	2R_8846940_SNP [dm3] 2R_12959435_SNP [dm6]	T	G	2.581e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3724509	3L_3724509_SNP [dm3] 3L_3724509_SNP [dm6]	C	A	2.584e^-4	0.872	INTRON CG32264
2L	19679266	2L_19679266_SNP [dm3] 2L_19679266_SNP [dm6]	G	A	2.601e^-4	0.872	INTRON Lar
2R	10594623	2R_10594623_DEL [dm3] 2R_14707118_DEL [dm6]	GTGCGCAAAGGTAACCCGCT...	G	2.604e^-4	0.872	INTRON mspo
X	10823358	X_10823358_DEL [dm3] X_10929325_DEL [dm6]	CTGAAAATGTGCAC...	C	2.604e^-4	0.872	INTRON CG2145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	10823394	X_10823394_SNP [dm3] X_10929361_SNP [dm6]	C	T	2.604e^-4	0.872	INTRON CG2145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	10823439	X_10823439_SNP [dm3] X_10929406_SNP [dm6]	A	G	2.604e^-4	0.872	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_hb
X	10823481	X_10823481_SNP [dm3] X_10929448_SNP [dm6]	T	C	2.604e^-4	0.872	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	10823542	X_10823542_SNP [dm3] X_10929509_SNP [dm6]	C	T	2.604e^-4	0.872	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25593145	3R_25593145_SNP [dm3] 3R_29767423_SNP [dm6]	A	C	2.609e^-4	0.872	NON_SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20613526	2R_20613526_SNP [dm3] 2R_24726003_SNP [dm6]	C	T	2.624e^-4	0.872	NON_SYNONYMOUS_CODING Mid1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2100742	X_2100742_SNP [dm3] X_2206709_SNP [dm6]	A	G	2.626e^-4	0.872	INTRON msta
2R	13302804	2R_13302804_SNP [dm3] 2R_17415299_SNP [dm6]	G	A	2.628e^-4	0.872	SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo
3R	22572379	3R_22572379_SNP [dm3] 3R_26746657_SNP [dm6]	G	A	2.629e^-4	0.872	INTERGENIC
3L	18345694	3L_18345694_SNP [dm3] 3L_18352594_SNP [dm6]	G	A	2.643e^-4	0.872	INTERGENIC
X	2111292	X_2111292_SNP [dm3] X_2217259_SNP [dm6]	C	G	2.644e^-4	0.872	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	684830	2L_684830_SNP [dm3] 2L_684830_SNP [dm6]	A	G	2.681e^-4	0.872	INTRON ds
X	2100839	X_2100839_SNP [dm3] X_2206806_SNP [dm6]	A	T	2.688e^-4	0.872	INTRON msta
2L	7040005	2L_7040005_SNP [dm3] 2L_7040005_SNP [dm6]	A	T	2.700e^-4	0.872	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12186584	2R_12186584_SNP [dm3] 2R_16299079_SNP [dm6]	T	C	2.701e^-4	0.872	UPSTREAM CG43265 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17417168	2R_17417168_SNP [dm3] 2R_21529663_SNP [dm6]	A	G	2.707e^-4	0.872	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12391470	3L_12391470_SNP [dm3] 3L_12398370_SNP [dm6]	T	C	2.715e^-4	0.872	SYNONYMOUS_CODING CG32104
3R	4374827	3R_4374827_SNP [dm3] 3R_8549105_SNP [dm6]	A	C	2.719e^-4	0.872	INTERGENIC
2R	4470348	2R_4470348_SNP [dm3] 2R_8582843_SNP [dm6]	T	C	2.727e^-4	0.872	INTRON CG42326
2R	4470352	2R_4470352_SNP [dm3] 2R_8582847_SNP [dm6]	G	A	2.727e^-4	0.872	INTRON CG42326
2R	17689480	2R_17689480_SNP [dm3] 2R_21801975_SNP [dm6]	G	C	2.734e^-4	0.872	INTERGENIC
3L	3470073	3L_3470073_SNP [dm3] 3L_3470073_SNP [dm6]	G	A	2.741e^-4	0.872	INTRON CG14971
2L	13226987	2L_13226987_SNP [dm3] 2L_13226987_SNP [dm6]	G	T	2.744e^-4	0.872	UPSTREAM CG16813 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	390384	3L_390384_SNP [dm3] 3L_390384_SNP [dm6]	C	A	2.767e^-4	0.872	INTRON trh
3R	24598913	3R_24598913_SNP [dm3] 3R_28773191_SNP [dm6]	T	C	2.779e^-4	0.872	INTERGENIC
2L	5968217	2L_5968217_DEL [dm3] 2L_5968217_DEL [dm6]	GG	G	2.783e^-4	0.872	UPSTREAM Ucp4C & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9670571	2R_9670571_SNP [dm3] 2R_13783066_SNP [dm6]	A	C	2.799e^-4	0.872	UPSTREAM CR43810 INTRON Cpr50Ca
X	2100629	X_2100629_SNP [dm3] X_2206596_SNP [dm6]	C	T	2.810e^-4	0.872	INTRON msta
2L	1740550	2L_1740550_SNP [dm3] 2L_1740550_SNP [dm6]	A	G	2.820e^-4	0.872	INTRON CG17646
3L	12391396	3L_12391396_SNP [dm3] 3L_12398296_SNP [dm6]	C	T	2.838e^-4	0.872	NON_SYNONYMOUS_CODING CG32104
3L	12391431	3L_12391431_SNP [dm3] 3L_12398331_SNP [dm6]	T	A	2.838e^-4	0.872	SYNONYMOUS_CODING CG32104
2R	2036450	2R_2036450_SNP [dm3] 2R_6148945_SNP [dm6]	T	C	2.838e^-4	0.872	INTRON EcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11987428	2R_11987428_SNP [dm3] 2R_16099923_SNP [dm6]	G	A	2.840e^-4	0.872	SYNONYMOUS_CODING CG8414 DOWNSTREAM mRpL34	TF binding site mE1_TFBS_sens
2R	11987515	2R_11987515_SNP [dm3] 2R_16100010_SNP [dm6]	C	T	2.840e^-4	0.872	SYNONYMOUS_CODING CG8414 DOWNSTREAM mRpL34	TF binding site mE1_TFBS_sens
3L	690250	3L_690250_SNP [dm3] 3L_690250_SNP [dm6]	C	G	2.850e^-4	0.872	UPSTREAM RabX6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7142162	X_7142162_SNP [dm3] X_7248129_SNP [dm6]	G	C	2.856e^-4	0.872	INTRON CR44357
3R	5923409	3R_5923409_SNP [dm3] 3R_10097687_SNP [dm6]	T	C	2.858e^-4	0.872	EXON CR43459
3R	5923418	3R_5923418_SNP [dm3] 3R_10097696_SNP [dm6]	T	C	2.858e^-4	0.872	EXON CR43459
3L	690236	3L_690236_SNP [dm3] 3L_690236_SNP [dm6]	A	G	2.866e^-4	0.872	UPSTREAM RabX6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4178312	2L_4178312_INS [dm3] 2L_4178312_INS [dm6]	T	TGTAT	2.881e^-4	0.872	INTERGENIC
2R	9355275	2R_9355275_MNP [dm3] 2R_13467770_MNP [dm6]	GAT	ACG	2.891e^-4	0.872	INTRON arr
X	6475010	X_6475010_SNP [dm3] X_6580977_SNP [dm6]	T	C	2.899e^-4	0.872	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12602430	3L_12602430_SNP [dm3] 3L_12609330_SNP [dm6]	C	T	2.900e^-4	0.872	UPSTREAM caup INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8251064	2L_8251064_SNP [dm3] 2L_8251064_SNP [dm6]	A	G	2.902e^-4	0.872	INTRON CG8086
3L	18219124	3L_18219124_SNP [dm3] 3L_18226024_SNP [dm6]	T	A	2.908e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9134846	3L_9134846_SNP [dm3] 3L_9141746_SNP [dm6]	A	T	2.911e^-4	0.872	INTRON nwk
3R	25271768	3R_25271768_SNP [dm3] 3R_29446046_SNP [dm6]	T	A	2.920e^-4	0.872	INTRON Ptp99A
3L	18193781	3L_18193781_SNP [dm3] 3L_18200681_SNP [dm6]	A	G	2.927e^-4	0.872	UPSTREAM CG7320 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18853731	3L_18853731_SNP [dm3] 3L_18860631_SNP [dm6]	G	A	2.929e^-4	0.872	UPSTREAM mir-315 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11100942	2L_11100942_SNP [dm3] 2L_11100942_SNP [dm6]	C	T	2.933e^-4	0.872	UPSTREAM Ge-1 DOWNSTREAM Reps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	10316748	3L_10316748_DEL [dm3] 3L_10323648_DEL [dm6]	AA	A	2.935e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	15921506	3L_15921506_SNP [dm3] 3L_15928406_SNP [dm6]	G	C	2.937e^-4	0.872	SPLICE_SITE_REGION Pka-C3 INTRON Pka-C3
X	6470587	X_6470587_SNP [dm3] X_6576554_SNP [dm6]	C	T	2.943e^-4	0.872	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	423812	3L_423812_SNP [dm3] 3L_423812_SNP [dm6]	G	A	2.944e^-4	0.872	INTERGENIC
2R	7499692	2R_7499692_SNP [dm3] 2R_11612187_SNP [dm6]	A	G	3.002e^-4	0.872	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18894852	X_18894852_SNP [dm3] X_19000819_SNP [dm6]	G	A	3.004e^-4	0.872	INTRON CG43759
2R	9550874	2R_9550874_SNP [dm3] 2R_13663369_SNP [dm6]	T	C	3.015e^-4	0.872	NON_SYNONYMOUS_CODING CG6209 INTRON fas
2R	9551088	2R_9551088_SNP [dm3] 2R_13663583_SNP [dm6]	C	T	3.015e^-4	0.872	UTR_5_PRIME CG6209 INTRON fas
2L	9457300	2L_9457300_SNP [dm3] 2L_9457300_SNP [dm6]	A	G	3.020e^-4	0.872	INTRON numb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3971798	3R_3971798_SNP [dm3] 3R_8146076_SNP [dm6]	T	G	3.025e^-4	0.872	INTERGENIC
2L	12650327	2L_12650327_SNP [dm3] 2L_12650327_SNP [dm6]	A	G	3.039e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12391449	3L_12391449_SNP [dm3] 3L_12398349_SNP [dm6]	A	G	3.047e^-4	0.872	SYNONYMOUS_CODING CG32104
3R	8075379	3R_8075379_DEL [dm3] 3R_12249657_DEL [dm6]	AT	C	3.057e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
2R	14744014	2R_14744014_SNP [dm3] 2R_18856509_SNP [dm6]	A	G	3.070e^-4	0.872	SYNONYMOUS_CODING Jheh2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9968658	3L_9968658_SNP [dm3] 3L_9975558_SNP [dm6]	G	A	3.089e^-4	0.872	UTR_5_PRIME dpr6
3L	16359053	3L_16359053_SNP [dm3] 3L_16365953_SNP [dm6]	T	A	3.097e^-4	0.872	UTR_3_PRIME Cpr72Ec DOWNSTREAM Cpr72Eb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13174398	3L_13174398_SNP [dm3] 3L_13181298_SNP [dm6]	G	A	3.115e^-4	0.872	INTERGENIC
X	15359503	X_15359503_SNP [dm3] X_15465470_SNP [dm6]	A	C	3.122e^-4	0.872	SPLICE_SITE_REGION CG6299 UTR_5_PRIME CG6299 UPSTREAM CG6299 DOWNSTREAM CG6294 & 1 other INTRON CG6299 & 1 other	TF binding site mE1_TFBS_chinmo
3L	18324178	3L_18324178_SNP [dm3] 3L_18331078_SNP [dm6]	G	C	3.137e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8756561	3L_8756561_SNP [dm3] 3L_8763461_SNP [dm6]	C	A	3.147e^-4	0.872	INTRON Fhos
3R	24609774	3R_24609774_SNP [dm3] 3R_28784052_SNP [dm6]	A	C	3.160e^-4	0.872	INTERGENIC
X	2100928	X_2100928_SNP [dm3] X_2206895_SNP [dm6]	T	A	3.160e^-4	0.872	INTRON msta
X	2325264	X_2325264_SNP [dm3] X_2431231_SNP [dm6]	T	C	3.160e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	8846872	2R_8846872_SNP [dm3] 2R_12959367_SNP [dm6]	A	T	3.160e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	11431891	2L_11431891_SNP [dm3] 2L_11431891_SNP [dm6]	G	C	3.162e^-4	0.872	INTERGENIC
2L	8590380	2L_8590380_SNP [dm3] 2L_8590380_SNP [dm6]	T	G	3.164e^-4	0.872	INTRON Sema-1a EXON CR43855
3L	21236027	3L_21236027_SNP [dm3] 3L_21242927_SNP [dm6]	G	A	3.170e^-4	0.872	INTRON Eip78C
2R	18459171	2R_18459171_SNP [dm3] 2R_22571666_SNP [dm6]	T	G	3.177e^-4	0.872	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4451503	2R_4451503_SNP [dm3] 2R_8563998_SNP [dm6]	C	G	3.177e^-4	0.872	DOWNSTREAM Cyp6a14 INTERGENIC
2R	4451521	2R_4451521_SNP [dm3] 2R_8564016_SNP [dm6]	C	T	3.177e^-4	0.872	DOWNSTREAM Cyp6a14 INTERGENIC
3R	4366985	3R_4366985_SNP [dm3] 3R_8541263_SNP [dm6]	C	A	3.180e^-4	0.872	INTERGENIC
2R	8843773	2R_8843773_SNP [dm3] 2R_12956268_SNP [dm6]	G	A	3.184e^-4	0.872	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	8843804	2R_8843804_SNP [dm3] 2R_12956299_SNP [dm6]	A	G	3.184e^-4	0.872	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	18656037	2R_18656037_SNP [dm3] 2R_22768532_SNP [dm6]	G	A	3.189e^-4	0.872	INTRON CG42260
2R	6360295	2R_6360295_SNP [dm3] 2R_10472790_SNP [dm6]	G	T	3.192e^-4	0.872	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_sens
2R	16836113	2R_16836113_SNP [dm3] 2R_20948608_SNP [dm6]	T	C	3.198e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10810416	2R_10810416_SNP [dm3] 2R_14922911_SNP [dm6]	G	T	3.208e^-4	0.872	INTRON CG10249
2R	15287220	2R_15287220_INS [dm3] 2R_19399715_INS [dm6]	A	AA	3.240e^-4	0.872	UTR_3_PRIME hts UPSTREAM CR43430 INTRON hts
2R	18686262	2R_18686262_SNP [dm3] 2R_22798757_SNP [dm6]	A	T	3.241e^-4	0.872	UPSTREAM blw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	12392917	2R_12392917_SNP [dm3] 2R_16505412_SNP [dm6]	G	T	3.250e^-4	0.872	INTRON Sema-2a
3R	27543950	3R_27543950_SNP [dm3] 3R_31718228_SNP [dm6]	C	A	3.263e^-4	0.872	INTRON ttk
2L	10746391	2L_10746391_SNP [dm3] 2L_10746391_SNP [dm6]	G	A	3.291e^-4	0.872	INTRON CG17124
2L	10746419	2L_10746419_SNP [dm3] 2L_10746419_SNP [dm6]	A	G	3.291e^-4	0.872	INTRON CG17124
3L	15776543	3L_15776543_SNP [dm3] 3L_15783443_SNP [dm6]	T	A	3.310e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	14401429	X_14401429_SNP [dm3] X_14507396_SNP [dm6]	C	G	3.322e^-4	0.872	INTERGENIC
2L	959604	2L_959604_SNP [dm3] 2L_959604_SNP [dm6]	A	G	3.326e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	9781881	X_9781881_SNP [dm3] X_9887848_SNP [dm6]	T	G	3.335e^-4	0.872	DOWNSTREAM CG15249 INTERGENIC
2R	18752474	2R_18752474_SNP [dm3] 2R_22864951_SNP [dm6]	T	C	3.338e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	18752509	2R_18752509_SNP [dm3] 2R_22864986_SNP [dm6]	G	A	3.338e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	9177649	X_9177649_SNP [dm3] X_9283616_SNP [dm6]	A	C	3.344e^-4	0.872	UPSTREAM c11.1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	11047392	3L_11047392_SNP [dm3] 3L_11054292_SNP [dm6]	A	G	3.346e^-4	0.872	START_GAINED CG7888 UTR_5_PRIME CG7888
X	14520991	X_14520991_SNP [dm3] X_14626958_SNP [dm6]	T	C	3.346e^-4	0.872	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8343223	X_8343223_SNP [dm3] X_8449190_SNP [dm6]	A	G	3.374e^-4	0.872	INTRON org-1	TF binding site mE1_TFBS_cad
2L	12650300	2L_12650300_SNP [dm3] 2L_12650300_SNP [dm6]	C	T	3.374e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27512855	3R_27512855_SNP [dm3] 3R_31687133_SNP [dm6]	A	G	3.376e^-4	0.872	DOWNSTREAM CR45564 INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_Trl
3L	5741183	3L_5741183_SNP [dm3] 3L_5748083_SNP [dm6]	C	G	3.376e^-4	0.872	UTR_3_PRIME sif
2L	9735627	2L_9735627_SNP [dm3] 2L_9735627_SNP [dm6]	G	A	3.378e^-4	0.872	INTRON Nckx30C
2R	16434649	2R_16434649_SNP [dm3] 2R_20547144_SNP [dm6]	T	G	3.379e^-4	0.872	UTR_3_PRIME CG30148 DOWNSTREAM Obp57e
2L	512283	2L_512283_SNP [dm3] 2L_512283_SNP [dm6]	A	T	3.383e^-4	0.872	INTRON ush	regulatory region REDfly_CRMs
2L	512288	2L_512288_SNP [dm3] 2L_512288_SNP [dm6]	G	A	3.383e^-4	0.872	INTRON ush	regulatory region REDfly_CRMs
3L	3007331	3L_3007331_SNP [dm3] 3L_3007331_SNP [dm6]	G	C	3.391e^-4	0.872	INTRON FMRFaR
2R	15485839	2R_15485839_SNP [dm3] 2R_19598334_SNP [dm6]	G	C	3.408e^-4	0.872	INTRON sm
2R	18677731	2R_18677731_SNP [dm3] 2R_22790226_SNP [dm6]	A	T	3.408e^-4	0.872	INTRON CG42260
3L	16294160	3L_16294160_SNP [dm3] 3L_16301060_SNP [dm6]	G	C	3.409e^-4	0.872	UPSTREAM CG4982 INTERGENIC
2R	20732930	2R_20732930_SNP [dm3] 2R_24845407_SNP [dm6]	T	G	3.412e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	19887635	X_19887635_SNP [dm3] X_19993602_SNP [dm6]	A	G	3.414e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2102080	X_2102080_SNP [dm3] X_2208047_SNP [dm6]	T	C	3.423e^-4	0.872	SYNONYMOUS_CODING msta INTRON msta	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18693959	2R_18693959_SNP [dm3] 2R_22806454_SNP [dm6]	G	A	3.424e^-4	0.872	START_GAINED CycB UTR_5_PRIME CycB UPSTREAM CycB INTRON CycB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	3307415	3R_3307415_SNP [dm3] 3R_7481693_SNP [dm6]	A	G	3.432e^-4	0.872	INTERGENIC
2L	1743329	2L_1743329_SNP [dm3] 2L_1743329_SNP [dm6]	G	T	3.435e^-4	0.872	INTRON CG17646
2R	19023153	2R_19023153_DEL [dm3] 2R_23135630_DEL [dm6]	TCTCCT	T	3.446e^-4	0.872	INTERGENIC
3L	18324161	3L_18324161_INS [dm3] 3L_18331061_INS [dm6]	T	TT	3.447e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16684478	2L_16684478_SNP [dm3] 2L_16684478_SNP [dm6]	T	A	3.460e^-4	0.872	UPSTREAM CG31807 & 1 other INTRON grp	TF binding site BDTNP1_TFBS_dl
3R	17642784	3R_17642784_SNP [dm3] 3R_21817062_SNP [dm6]	T	A	3.477e^-4	0.872	INTRON CASK
2L	1367894	2L_1367894_SNP [dm3] 2L_1367894_SNP [dm6]	A	G	3.487e^-4	0.872	UPSTREAM CG14346 INTERGENIC	TF binding site mE1_TFBS_inv
X	20625467	X_20625467_SNP [dm3] X_20754440_SNP [dm6]	C	A	3.495e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16276661	2L_16276661_SNP [dm3] 2L_16276661_SNP [dm6]	G	T	3.496e^-4	0.872	INTRON crp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4406753	3R_4406753_SNP [dm3] 3R_8581031_SNP [dm6]	C	G	3.516e^-4	0.872	INTRON 5-HT2B
2R	18442527	2R_18442527_SNP [dm3] 2R_22555022_SNP [dm6]	T	C	3.527e^-4	0.872	INTRON px	TF binding site mE1_TFBS_cad
2R	20738765	2R_20738765_SNP [dm3] 2R_24851242_SNP [dm6]	T	A	3.531e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	560711	2L_560711_SNP [dm3] 2L_560711_SNP [dm6]	T	A	3.535e^-4	0.872	UTR_3_PRIME CG11835 UPSTREAM rempA DOWNSTREAM CG2789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1030735	2L_1030735_SNP [dm3] 2L_1030735_SNP [dm6]	G	C	3.537e^-4	0.872	INTRON IA-2
2L	6087362	2L_6087362_SNP [dm3] 2L_6087362_SNP [dm6]	C	A	3.548e^-4	0.872	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl
X	12299704	X_12299704_SNP [dm3] X_12405671_SNP [dm6]	G	A	3.551e^-4	0.872	UTR_3_PRIME CG32651	TF binding site BDTNP1_TFBS_dl
X	8929836	X_8929836_SNP [dm3] X_9035803_SNP [dm6]	T	A	3.559e^-4	0.872	INTRON CR43836 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8594307	2L_8594307_SNP [dm3] 2L_8594307_SNP [dm6]	G	A	3.565e^-4	0.872	INTRON Sema-1a EXON CR43855
3L	8187963	3L_8187963_SNP [dm3] 3L_8194863_SNP [dm6]	A	G	3.566e^-4	0.872	DOWNSTREAM Ubc12 INTRON MED24
2R	17671963	2R_17671963_SNP [dm3] 2R_21784458_SNP [dm6]	A	G	3.569e^-4	0.872	INTERGENIC
3R	14176242	3R_14176242_SNP [dm3] 3R_18350520_SNP [dm6]	C	T	3.577e^-4	0.872	INTRON CG15803
3R	17647733	3R_17647733_SNP [dm3] 3R_21822011_SNP [dm6]	A	G	3.580e^-4	0.872	INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10301578	2L_10301578_SNP [dm3] 2L_10301578_SNP [dm6]	C	T	3.593e^-4	0.872	SYNONYMOUS_CODING CG13138 DOWNSTREAM nmd	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	11178941	2R_11178941_SNP [dm3] 2R_15291436_SNP [dm6]	C	T	3.598e^-4	0.872	UPSTREAM Trpm INTRON Trpm
3R	14116960	3R_14116960_SNP [dm3] 3R_18291238_SNP [dm6]	A	T	3.605e^-4	0.872	SYNONYMOUS_CODING l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12233776	X_12233776_SNP [dm3] X_12339743_SNP [dm6]	A	G	3.608e^-4	0.872	INTERGENIC
2R	18694079	2R_18694079_SNP [dm3] 2R_22806574_SNP [dm6]	A	G	3.610e^-4	0.872	UPSTREAM CycB INTRON CycB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11159966	3L_11159966_SNP [dm3] 3L_11166866_SNP [dm6]	A	G	3.611e^-4	0.872	UTR_3_PRIME wls DOWNSTREAM Alg10
2R	2463585	2R_2463585_SNP [dm3] 2R_6576080_SNP [dm6]	C	A	3.623e^-4	0.872	INTRON jing	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12656788	2L_12656788_SNP [dm3] 2L_12656788_SNP [dm6]	C	T	3.638e^-4	0.872	UPSTREAM pdm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12659559	2L_12659559_SNP [dm3] 2L_12659559_SNP [dm6]	A	G	3.638e^-4	0.872	INTRON pdm2
2L	12666861	2L_12666861_SNP [dm3] 2L_12666861_SNP [dm6]	A	C	3.638e^-4	0.872	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13585023	3L_13585023_SNP [dm3] 3L_13591923_SNP [dm6]	T	C	3.642e^-4	0.872	INTRON bru-3
2L	6618928	2L_6618928_SNP [dm3] 2L_6618928_SNP [dm6]	T	G	3.652e^-4	0.872	UPSTREAM CR44913 INTRON CG11320
3L	12391299	3L_12391299_SNP [dm3] 3L_12398199_SNP [dm6]	T	G	3.678e^-4	0.872	SYNONYMOUS_CODING CG32104
2L	15216339	2L_15216339_SNP [dm3] 2L_15216339_SNP [dm6]	T	C	3.684e^-4	0.872	DOWNSTREAM CG43230 INTERGENIC
2L	15216357	2L_15216357_SNP [dm3] 2L_15216357_SNP [dm6]	T	A	3.684e^-4	0.872	DOWNSTREAM CG43230 INTERGENIC
3L	9429336	3L_9429336_SNP [dm3] 3L_9436236_SNP [dm6]	C	T	3.684e^-4	0.872	SYNONYMOUS_CODING MTF-1 UPSTREAM CG42526	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	1797238	3R_1797238_SNP [dm3] 3R_5971516_SNP [dm6]	C	T	3.689e^-4	0.872	DOWNSTREAM CR44926 & 1 other INTERGENIC
X	13684236	X_13684236_SNP [dm3] X_13790203_SNP [dm6]	A	G	3.697e^-4	0.872	DOWNSTREAM CG10993 INTRON inaE
X	13684238	X_13684238_SNP [dm3] X_13790205_SNP [dm6]	T	G	3.697e^-4	0.872	DOWNSTREAM CG10993 INTRON inaE
3L	5361315	3L_5361315_SNP [dm3] 3L_5368215_SNP [dm6]	A	T	3.713e^-4	0.872	UPSTREAM CG10635 DOWNSTREAM Membrin INTERGENIC
2L	9695166	2L_9695166_SNP [dm3] 2L_9695166_SNP [dm6]	T	A	3.728e^-4	0.872	INTRON Pka-C1
2L	10509667	2L_10509667_SNP [dm3] 2L_10509667_SNP [dm6]	C	A	3.731e^-4	0.872	INTRON CG7384	TF binding site mE1_TFBS_cad
2R	19185488	2R_19185488_SNP [dm3] 2R_23297965_SNP [dm6]	T	C	3.735e^-4	0.872	INTERGENIC
2R	19185489	2R_19185489_SNP [dm3] 2R_23297966_SNP [dm6]	T	C	3.735e^-4	0.872	INTERGENIC
2R	13147039	2R_13147039_SNP [dm3] 2R_17259534_SNP [dm6]	A	C	3.737e^-4	0.872	INTRON mbl	TF binding site mE1_TFBS_inv
3L	690249	3L_690249_SNP [dm3] 3L_690249_SNP [dm6]	C	A	3.746e^-4	0.872	UPSTREAM RabX6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18981399	2R_18981399_SNP [dm3] 2R_23093876_SNP [dm6]	A	G	3.765e^-4	0.872	NON_SYNONYMOUS_CODING CG9876
3L	465235	3L_465235_DEL [dm3] 3L_465235_DEL [dm6]	AATCTTTCAA	A	3.770e^-4	0.872	INTRON klar
X	20759310	X_20759310_SNP [dm3] X_20888283_SNP [dm6]	G	A	3.793e^-4	0.872	INTRON shakB
2L	14862077	2L_14862077_SNP [dm3] 2L_14862077_SNP [dm6]	G	C	3.794e^-4	0.872	INTERGENIC
2L	1746339	2L_1746339_SNP [dm3] 2L_1746339_SNP [dm6]	T	C	3.811e^-4	0.872	INTRON CG17646
2R	8843864	2R_8843864_SNP [dm3] 2R_12956359_SNP [dm6]	A	T	3.813e^-4	0.872	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	6946250	3R_6946250_DEL [dm3] 3R_11120528_DEL [dm6]	TT	C	3.821e^-4	0.872	INTERGENIC
X	2102445	X_2102445_SNP [dm3] X_2208412_SNP [dm6]	T	C	3.832e^-4	0.872	NON_SYNONYMOUS_CODING msta INTRON msta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15781843	3L_15781843_SNP [dm3] 3L_15788743_SNP [dm6]	T	C	3.841e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	15551263	2R_15551263_SNP [dm3] 2R_19663758_SNP [dm6]	C	A	3.841e^-4	0.872	DOWNSTREAM hrg & 1 other INTERGENIC
3R	7141305	3R_7141305_SNP [dm3] 3R_11315583_SNP [dm6]	G	A	3.842e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17369396	2R_17369396_SNP [dm3] 2R_21481891_SNP [dm6]	T	A	3.854e^-4	0.872	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20388358	2R_20388358_SNP [dm3] 2R_24500835_SNP [dm6]	A	G	3.870e^-4	0.872	UTR_3_PRIME Prosalpha4T2 UPSTREAM Ssl DOWNSTREAM Prosalpha4T2
2L	16276656	2L_16276656_SNP [dm3] 2L_16276656_SNP [dm6]	A	T	3.870e^-4	0.872	INTRON crp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5425765	2L_5425765_SNP [dm3] 2L_5425765_SNP [dm6]	G	A	3.872e^-4	0.872	INTERGENIC
2R	14150517	2R_14150517_SNP [dm3] 2R_18263012_SNP [dm6]	A	G	3.891e^-4	0.872	INTERGENIC
X	2089990	X_2089990_SNP [dm3] X_2195957_SNP [dm6]	C	A	3.894e^-4	0.872	INTRON Mct1
2L	16490047	2L_16490047_SNP [dm3] 2L_16490047_SNP [dm6]	T	C	3.913e^-4	0.872	NON_SYNONYMOUS_CODING CG4580 DOWNSTREAM CR44994
2L	13028387	2L_13028387_SNP [dm3] 2L_13028387_SNP [dm6]	G	A	3.914e^-4	0.872	SYNONYMOUS_CODING CG9932	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16931917	2R_16931917_SNP [dm3] 2R_21044412_SNP [dm6]	T	G	3.918e^-4	0.872	INTERGENIC
3R	17647593	3R_17647593_SNP [dm3] 3R_21821871_SNP [dm6]	G	A	3.928e^-4	0.872	INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7876803	X_7876803_SNP [dm3] X_7982770_SNP [dm6]	G	A	3.930e^-4	0.872	INTRON sn
X	12299607	X_12299607_SNP [dm3] X_12405574_SNP [dm6]	G	A	3.955e^-4	0.872	UTR_3_PRIME CG32651	TF binding site BDTNP1_TFBS_dl
X	2101512	X_2101512_SNP [dm3] X_2207479_SNP [dm6]	G	T	3.958e^-4	0.872	INTRON msta	TF binding site mE1_TFBS_chinmo
3L	4364877	3L_4364877_SNP [dm3] 3L_4364877_SNP [dm6]	G	A	3.972e^-4	0.872	SYNONYMOUS_CODING mRpS6 UPSTREAM Cip4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5287124	2L_5287124_SNP [dm3] 2L_5287124_SNP [dm6]	C	G	3.972e^-4	0.872	UPSTREAM CR44742 DOWNSTREAM CR44743 INTERGENIC
2R	20373223	2R_20373223_SNP [dm3] 2R_24485700_SNP [dm6]	T	A	3.974e^-4	0.872	INTRON CG13579
3R	24609426	3R_24609426_SNP [dm3] 3R_28783704_SNP [dm6]	T	C	3.983e^-4	0.872	INTERGENIC
3R	24599451	3R_24599451_SNP [dm3] 3R_28773729_SNP [dm6]	T	G	3.988e^-4	0.872	INTERGENIC
3R	23905469	3R_23905469_INS [dm3] 3R_28079747_INS [dm6]	T	TT	3.994e^-4	0.872	INTRON CG34362
3L	390415	3L_390415_SNP [dm3] 3L_390415_SNP [dm6]	C	G	3.996e^-4	0.872	INTRON trh
2L	17383451	2L_17383451_SNP [dm3] 2L_17383451_SNP [dm6]	A	G	3.998e^-4	0.872	INTRON Lrch	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
2R	18909284	2R_18909284_DEL [dm3] 2R_23021761_DEL [dm6]	AAGCTGA	A	4.026e^-4	0.872	INTRON twi & 1 other
3L	5741172	3L_5741172_SNP [dm3] 3L_5748072_SNP [dm6]	G	A	4.031e^-4	0.872	UTR_3_PRIME sif
2R	11763250	2R_11763250_SNP [dm3] 2R_15875745_SNP [dm6]	G	C	4.040e^-4	0.872	SYNONYMOUS_CODING sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3002275	2R_3002275_SNP [dm3] 2R_7114770_SNP [dm6]	C	T	4.042e^-4	0.872	INTRON esn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8778443	3L_8778443_SNP [dm3] 3L_8785343_SNP [dm6]	A	T	4.051e^-4	0.872	INTRON Fhos	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15523191	3L_15523191_SNP [dm3] 3L_15530091_SNP [dm6]	A	C	4.058e^-4	0.872	UTR_3_PRIME CG43248 UPSTREAM obst-H
X	4329493	X_4329493_SNP [dm3] X_4435460_SNP [dm6]	G	T	4.068e^-4	0.872	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3R	14556430	3R_14556430_SNP [dm3] 3R_18730708_SNP [dm6]	A	C	4.071e^-4	0.872	INTRON Cha
3R	20262196	3R_20262196_SNP [dm3] 3R_24436474_SNP [dm6]	T	A	4.076e^-4	0.872	INTRON nAChRalpha1
2R	19136821	2R_19136821_SNP [dm3] 2R_23249298_SNP [dm6]	T	A	4.088e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1788359	2L_1788359_SNP [dm3] 2L_1788359_SNP [dm6]	A	C	4.111e^-4	0.872	DOWNSTREAM Gr22d INTERGENIC
3R	13676624	3R_13676624_SNP [dm3] 3R_17850902_SNP [dm6]	C	T	4.115e^-4	0.872	INTRON tinc
X	15455687	X_15455687_SNP [dm3] X_15561654_SNP [dm6]	A	C	4.120e^-4	0.872	INTERGENIC
3R	7133771	3R_7133771_SNP [dm3] 3R_11308049_SNP [dm6]	T	G	4.131e^-4	0.872	INTERGENIC
3L	13254095	3L_13254095_SNP [dm3] 3L_13260995_SNP [dm6]	G	A	4.138e^-4	0.872	INTRON caps
3R	21005355	3R_21005355_SNP [dm3] 3R_25179633_SNP [dm6]	G	T	4.153e^-4	0.872	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8443277	2R_8443277_SNP [dm3] 2R_12555772_SNP [dm6]	T	C	4.164e^-4	0.872	INTRON fra
X	12233690	X_12233690_SNP [dm3] X_12339657_SNP [dm6]	T	C	4.178e^-4	0.872	INTERGENIC
2R	7525607	2R_7525607_SNP [dm3] 2R_11638102_SNP [dm6]	T	C	4.184e^-4	0.872	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	20734601	2R_20734601_SNP [dm3] 2R_24847078_SNP [dm6]	C	T	4.186e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	7269338	3L_7269338_SNP [dm3] 3L_7276238_SNP [dm6]	A	T	4.194e^-4	0.872	INTRON unc-13-4A
2L	8251123	2L_8251123_SNP [dm3] 2L_8251123_SNP [dm6]	T	G	4.207e^-4	0.872	INTRON CG8086
X	15832505	X_15832505_INS [dm3] X_15938472_INS [dm6]	T	TCTA	4.213e^-4	0.872	INTRON Stim
X	15832509	X_15832509_INS [dm3] X_15938476_INS [dm6]	A	ATCT	4.213e^-4	0.872	INTRON Stim
X	15832513	X_15832513_SNP [dm3] X_15938480_SNP [dm6]	T	A	4.213e^-4	0.872	INTRON Stim
2R	10661660	2R_10661660_SNP [dm3] 2R_14774155_SNP [dm6]	C	A	4.213e^-4	0.872	INTRON kn	TF binding site mE1_TFBS_cad
2L	14413474	2L_14413474_SNP [dm3] 2L_14413474_SNP [dm6]	C	T	4.221e^-4	0.872	INTERGENIC
3R	4374262	3R_4374262_SNP [dm3] 3R_8548540_SNP [dm6]	T	A	4.225e^-4	0.872	INTERGENIC
2R	19796826	2R_19796826_SNP [dm3] 2R_23909303_SNP [dm6]	G	T	4.227e^-4	0.872	UPSTREAM CR44806 INTRON kcc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	26853601	3R_26853601_SNP [dm3] 3R_31027879_SNP [dm6]	T	C	4.229e^-4	0.872	INTERGENIC
3L	12391527	3L_12391527_SNP [dm3] 3L_12398427_SNP [dm6]	T	C	4.235e^-4	0.872	INTRON CG32104
2L	1741985	2L_1741985_SNP [dm3] 2L_1741985_SNP [dm6]	C	T	4.253e^-4	0.872	SYNONYMOUS_CODING CG17646	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15781916	3L_15781916_SNP [dm3] 3L_15788816_SNP [dm6]	A	G	4.268e^-4	0.872	INTERGENIC
2L	15732388	2L_15732388_SNP [dm3] 2L_15732388_SNP [dm6]	C	G	4.271e^-4	0.872	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	2103066	X_2103066_SNP [dm3] X_2209033_SNP [dm6]	C	T	4.273e^-4	0.872	UPSTREAM msta INTRON msta	TF binding site mE1_TFBS_chinmo
2L	9013758	2L_9013758_SNP [dm3] 2L_9013758_SNP [dm6]	G	A	4.280e^-4	0.872	SYNONYMOUS_CODING Rcd-1r UTR_3_PRIME CG13102 DOWNSTREAM CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8481922	2R_8481922_SNP [dm3] 2R_12594417_SNP [dm6]	G	A	4.300e^-4	0.872	UPSTREAM CR45279 DOWNSTREAM CR43909 INTRON Amph	TF binding site BDTNP1_TFBS_dl
3R	27502083	3R_27502083_SNP [dm3] 3R_31676361_SNP [dm6]	C	G	4.300e^-4	0.872	NON_SYNONYMOUS_CODING CG1815 UTR_3_PRIME CG1815	TF binding site mE1_TFBS_sens
3R	27505943	3R_27505943_SNP [dm3] 3R_31680221_SNP [dm6]	T	C	4.300e^-4	0.872	UPSTREAM CG11550 DOWNSTREAM CR44091 INTERGENIC
3R	27506673	3R_27506673_SNP [dm3] 3R_31680951_SNP [dm6]	T	C	4.300e^-4	0.872	INTRON CR44091
3R	27529622	3R_27529622_SNP [dm3] 3R_31703900_SNP [dm6]	C	A	4.300e^-4	0.872	DOWNSTREAM CR45052 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_inv
3R	27534997	3R_27534997_SNP [dm3] 3R_31709275_SNP [dm6]	A	G	4.300e^-4	0.872	UPSTREAM CG42693 EXON CR34046	TF binding site mE1_TFBS_Trl
3R	27548640	3R_27548640_SNP [dm3] 3R_31722918_SNP [dm6]	C	G	4.300e^-4	0.872	INTRON ttk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27555231	3R_27555231_SNP [dm3] 3R_31729509_SNP [dm6]	T	A	4.300e^-4	0.872	INTRON ttk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	685871	3L_685871_SNP [dm3] 3L_685871_SNP [dm6]	C	T	4.306e^-4	0.872	UPSTREAM ebd1 DOWNSTREAM CG3344 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10973987	3L_10973987_SNP [dm3] 3L_10980887_SNP [dm6]	C	T	4.320e^-4	0.872	DOWNSTREAM klu INTERGENIC
2R	3004611	2R_3004611_SNP [dm3] 2R_7117106_SNP [dm6]	T	C	4.322e^-4	0.872	INTRON esn	TF binding site mE1_TFBS_HSA
3R	24477407	3R_24477407_SNP [dm3] 3R_28651685_SNP [dm6]	G	T	4.327e^-4	0.872	INTERGENIC
2R	15543642	2R_15543642_SNP [dm3] 2R_19656137_SNP [dm6]	G	A	4.328e^-4	0.872	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7173308	3L_7173308_SNP [dm3] 3L_7180208_SNP [dm6]	A	G	4.354e^-4	0.872	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8844927	3R_8844927_SNP [dm3] 3R_13019205_SNP [dm6]	C	A	4.368e^-4	0.872	INTRON CtBP	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	27513603	3R_27513603_SNP [dm3] 3R_31687881_SNP [dm6]	A	G	4.371e^-4	0.872	DOWNSTREAM CR45564 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27067756	3R_27067756_SNP [dm3] 3R_31242034_SNP [dm6]	C	T	4.377e^-4	0.872	INTRON qless
3R	9276755	3R_9276755_SNP [dm3] 3R_13451033_SNP [dm6]	T	G	4.378e^-4	0.872	INTRON CG14372	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	16245289	2L_16245289_SNP [dm3] 2L_16245289_SNP [dm6]	C	T	4.401e^-4	0.872	NON_SYNONYMOUS_CODING CG42818 DOWNSTREAM PRL-1
2R	9155610	2R_9155610_SNP [dm3] 2R_13268105_SNP [dm6]	T	C	4.406e^-4	0.872	UTR_3_PRIME Dh31-R
2L	3197430	2L_3197430_SNP [dm3] 2L_3197430_SNP [dm6]	T	A	4.407e^-4	0.872	INTRON CG34393
2R	12090444	2R_12090444_SNP [dm3] 2R_16202939_SNP [dm6]	T	G	4.412e^-4	0.872	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	16188424	2L_16188424_SNP [dm3] 2L_16188424_SNP [dm6]	A	G	4.417e^-4	0.872	INTRON Ca-alpha1D
3L	3470115	3L_3470115_DEL [dm3] 3L_3470115_DEL [dm6]	TTGGT	T	4.419e^-4	0.872	INTRON CG14971
X	10061471	X_10061471_SNP [dm3] X_10167438_SNP [dm6]	C	A	4.422e^-4	0.872	INTRON CR44894 & 1 other
2L	17331566	2L_17331566_SNP [dm3] 2L_17331566_SNP [dm6]	T	A	4.422e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13676552	3R_13676552_SNP [dm3] 3R_17850830_SNP [dm6]	A	C	4.425e^-4	0.872	INTRON tinc
2L	1082077	2L_1082077_SNP [dm3] 2L_1082077_SNP [dm6]	A	G	4.427e^-4	0.872	INTRON Atg4a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	15523283	3L_15523283_SNP [dm3] 3L_15530183_SNP [dm6]	A	T	4.433e^-4	0.872	UTR_3_PRIME CG43248 UPSTREAM obst-H	TF binding site BDTNP1_TFBS_dl
3L	15523315	3L_15523315_SNP [dm3] 3L_15530215_SNP [dm6]	A	T	4.433e^-4	0.872	UTR_3_PRIME CG43248 UPSTREAM obst-H	TF binding site BDTNP1_TFBS_dl
2L	18422501	2L_18422501_SNP [dm3] 2L_18422501_SNP [dm6]	G	T	4.440e^-4	0.872	INTERGENIC
2R	16496528	2R_16496528_SNP [dm3] 2R_20609023_SNP [dm6]	G	A	4.445e^-4	0.872	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15365855	2L_15365855_SNP [dm3] 2L_15365855_SNP [dm6]	T	G	4.470e^-4	0.872	INTERGENIC
2L	1743890	2L_1743890_SNP [dm3] 2L_1743890_SNP [dm6]	G	A	4.477e^-4	0.872	INTRON CG17646
2L	963853	2L_963853_SNP [dm3] 2L_963853_SNP [dm6]	T	C	4.502e^-4	0.872	INTERGENIC
2L	10854655	2L_10854655_SNP [dm3] 2L_10854655_SNP [dm6]	C	T	4.507e^-4	0.872	UTR_3_PRIME Dnz1 DOWNSTREAM CG43129
3L	18352884	3L_18352884_SNP [dm3] 3L_18359784_SNP [dm6]	C	A	4.508e^-4	0.872	INTERGENIC
2L	3964957	2L_3964957_SNP [dm3] 2L_3964957_SNP [dm6]	C	G	4.516e^-4	0.872	INTRON fred
2R	18599897	2R_18599897_SNP [dm3] 2R_22712392_SNP [dm6]	C	T	4.521e^-4	0.872	UPSTREAM CG30268 INTRON CG30275
X	10823341	X_10823341_SNP [dm3] X_10929308_SNP [dm6]	A	G	4.527e^-4	0.872	INTRON CG2145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	7050630	2R_7050630_SNP [dm3] 2R_11163125_SNP [dm6]	A	G	4.528e^-4	0.872	INTRON shn & 1 other
2L	15172461	2L_15172461_SNP [dm3] 2L_15172461_SNP [dm6]	G	A	4.546e^-4	0.872	INTRON CG4168
X	7876801	X_7876801_SNP [dm3] X_7982768_SNP [dm6]	A	G	4.560e^-4	0.872	INTRON sn
X	1951033	X_1951033_SNP [dm3] X_2057000_SNP [dm6]	T	C	4.567e^-4	0.872	NON_SYNONYMOUS_CODING Sik2 DOWNSTREAM CR44896	TF binding site mE1_TFBS_chinmo
2L	8590673	2L_8590673_SNP [dm3] 2L_8590673_SNP [dm6]	A	T	4.569e^-4	0.872	INTRON Sema-1a & 1 other
2R	4346205	2R_4346205_SNP [dm3] 2R_8458700_SNP [dm6]	C	T	4.583e^-4	0.872	UPSTREAM Mal-A4 & 1 other INTERGENIC
2L	12554017	2L_12554017_SNP [dm3] 2L_12554017_SNP [dm6]	G	C	4.590e^-4	0.872	INTERGENIC
3L	8796818	3L_8796818_SNP [dm3] 3L_8803718_SNP [dm6]	C	T	4.596e^-4	0.872	SYNONYMOUS_CODING CG32023 DOWNSTREAM CG34426
X	20759347	X_20759347_DEL [dm3] X_20888320_DEL [dm6]	TAAT	T	4.596e^-4	0.872	INTRON shakB
X	12325875	X_12325875_SNP [dm3] X_12431842_SNP [dm6]	T	C	4.600e^-4	0.872	UPSTREAM Pkcdelta INTERGENIC	TF binding site mE1_TFBS_Trl
2L	14575450	2L_14575450_SNP [dm3] 2L_14575450_SNP [dm6]	A	T	4.604e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	13561683	3L_13561683_SNP [dm3] 3L_13568583_SNP [dm6]	C	A	4.608e^-4	0.872	INTRON bru-3
2R	5489929	2R_5489929_SNP [dm3] 2R_9602424_SNP [dm6]	G	A	4.616e^-4	0.872	SYNONYMOUS_CODING CG30339 INTRON CG1902
3L	13711825	3L_13711825_SNP [dm3] 3L_13718725_SNP [dm6]	A	G	4.625e^-4	0.872	INTRON bru-3
3L	12391521	3L_12391521_SNP [dm3] 3L_12398421_SNP [dm6]	G	A	4.629e^-4	0.872	SPLICE_SITE_REGION CG32104 INTRON CG32104
3R	18616637	3R_18616637_SNP [dm3] 3R_22790915_SNP [dm6]	A	C	4.630e^-4	0.872	SYNONYMOUS_CODING CG7029	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15365985	2L_15365985_SNP [dm3] 2L_15365985_SNP [dm6]	A	T	4.635e^-4	0.872	INTERGENIC
2R	8843738	2R_8843738_SNP [dm3] 2R_12956233_SNP [dm6]	T	G	4.638e^-4	0.872	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	15491039	2R_15491039_SNP [dm3] 2R_19603534_SNP [dm6]	G	C	4.643e^-4	0.872	INTRON sm EXON CR44473
3R	17649255	3R_17649255_SNP [dm3] 3R_21823533_SNP [dm6]	A	G	4.654e^-4	0.872	UPSTREAM CASK & 1 other INTERGENIC
X	10823307	X_10823307_SNP [dm3] X_10929274_SNP [dm6]	A	G	4.659e^-4	0.872	SPLICE_SITE_REGION CG2145 INTRON CG2145	TF binding site BDTNP1_TFBS_dl
2R	14674754	2R_14674754_SNP [dm3] 2R_18787249_SNP [dm6]	T	G	4.660e^-4	0.872	INTRON CG15080
3L	4735860	3L_4735860_SNP [dm3] 3L_4735860_SNP [dm6]	A	G	4.667e^-4	0.872	INTRON RhoGEF64C
2R	14265905	2R_14265905_SNP [dm3] 2R_18378400_SNP [dm6]	A	C	4.694e^-4	0.872	DOWNSTREAM CR42736 INTERGENIC
3R	24926301	3R_24926301_SNP [dm3] 3R_29100579_SNP [dm6]	T	A	4.695e^-4	0.872	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2101002	X_2101002_SNP [dm3] X_2206969_SNP [dm6]	A	G	4.696e^-4	0.872	INTRON msta
3R	7125323	3R_7125323_SNP [dm3] 3R_11299601_SNP [dm6]	T	C	4.698e^-4	0.872	INTRON CR31386
2R	10454150	2R_10454150_SNP [dm3] 2R_14566645_SNP [dm6]	T	C	4.702e^-4	0.872	INTRON ttv
2L	13262560	2L_13262560_SNP [dm3] 2L_13262560_SNP [dm6]	T	G	4.705e^-4	0.872	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
3L	9912096	3L_9912096_SNP [dm3] 3L_9918996_SNP [dm6]	G	A	4.712e^-4	0.872	INTRON CG34356
3R	20980791	3R_20980791_SNP [dm3] 3R_25155069_SNP [dm6]	A	T	4.716e^-4	0.872	INTERGENIC
3R	20980798	3R_20980798_SNP [dm3] 3R_25155076_SNP [dm6]	A	G	4.716e^-4	0.872	INTERGENIC
3R	20980800	3R_20980800_SNP [dm3] 3R_25155078_SNP [dm6]	A	T	4.716e^-4	0.872	INTERGENIC
3R	20980807	3R_20980807_SNP [dm3] 3R_25155085_SNP [dm6]	G	A	4.716e^-4	0.872	INTERGENIC
3R	20980821	3R_20980821_SNP [dm3] 3R_25155099_SNP [dm6]	T	A	4.716e^-4	0.872	INTERGENIC
3R	20980823	3R_20980823_SNP [dm3] 3R_25155101_SNP [dm6]	A	T	4.716e^-4	0.872	INTERGENIC
2L	11403272	2L_11403272_SNP [dm3] 2L_11403272_SNP [dm6]	A	G	4.724e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
3L	16307933	3L_16307933_SNP [dm3] 3L_16314833_SNP [dm6]	G	A	4.734e^-4	0.872	SYNONYMOUS_CODING CG13062	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20738821	2R_20738821_DEL [dm3] 2R_24851298_DEL [dm6]	GGGGCAGGTG	G	4.737e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
3L	9936364	3L_9936364_SNP [dm3] 3L_9943264_SNP [dm6]	C	G	4.739e^-4	0.872	INTRON CG34356
2L	1738975	2L_1738975_SNP [dm3] 2L_1738975_SNP [dm6]	G	C	4.740e^-4	0.872	INTRON CG17646
3L	15781665	3L_15781665_SNP [dm3] 3L_15788565_SNP [dm6]	A	G	4.744e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	8187978	3L_8187978_SNP [dm3] 3L_8194878_SNP [dm6]	A	T	4.752e^-4	0.872	DOWNSTREAM Ubc12 INTRON MED24
2R	11178957	2R_11178957_SNP [dm3] 2R_15291452_SNP [dm6]	G	A	4.760e^-4	0.872	UPSTREAM Trpm INTRON Trpm
2L	15216334	2L_15216334_SNP [dm3] 2L_15216334_SNP [dm6]	C	A	4.779e^-4	0.872	DOWNSTREAM CG43230 INTERGENIC
3L	24234332	3L_24234332_SNP [dm3] 3L_24241232_SNP [dm6]	T	A	4.779e^-4	0.872	INTRON Snap25
3L	7269893	3L_7269893_SNP [dm3] 3L_7276793_SNP [dm6]	A	G	4.781e^-4	0.872	INTRON unc-13-4A
3R	8071994	3R_8071994_SNP [dm3] 3R_12246272_SNP [dm6]	A	T	4.785e^-4	0.872	DOWNSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14454878	3R_14454878_SNP [dm3] 3R_18629156_SNP [dm6]	T	C	4.790e^-4	0.872	UTR_3_PRIME CG14301 UPSTREAM tRNA:CR31228 INTRON qin
3R	19627234	3R_19627234_SNP [dm3] 3R_23801512_SNP [dm6]	A	C	4.793e^-4	0.872	UTR_3_PRIME mbc DOWNSTREAM CG33111
3L	12390887	3L_12390887_SNP [dm3] 3L_12397787_SNP [dm6]	A	G	4.796e^-4	0.872	SYNONYMOUS_CODING CG32104 DOWNSTREAM Obp69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12391030	3L_12391030_SNP [dm3] 3L_12397930_SNP [dm6]	C	T	4.796e^-4	0.872	DOWNSTREAM Obp69a INTRON CG32104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1738912	2L_1738912_SNP [dm3] 2L_1738912_SNP [dm6]	A	C	4.797e^-4	0.872	INTRON CG17646
2L	17168046	2L_17168046_SNP [dm3] 2L_17168046_SNP [dm6]	C	A	4.804e^-4	0.872	INTRON beat-IIIa & 1 other
X	12345264	X_12345264_SNP [dm3] X_12451231_SNP [dm6]	A	T	4.811e^-4	0.872	INTRON Pkcdelta
2R	16634182	2R_16634182_SNP [dm3] 2R_20746677_SNP [dm6]	T	A	4.817e^-4	0.872	INTRON dpr
2L	1744268	2L_1744268_SNP [dm3] 2L_1744268_SNP [dm6]	C	T	4.822e^-4	0.872	INTRON CG17646
X	2110188	X_2110188_SNP [dm3] X_2216155_SNP [dm6]	C	T	4.822e^-4	0.872	SYNONYMOUS_CODING Vinc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	688723	3L_688723_SNP [dm3] 3L_688723_SNP [dm6]	C	T	4.826e^-4	0.872	SYNONYMOUS_CODING CG32483 UPSTREAM CG3344	TF binding site mE1_TFBS_chinmo
3L	2040596	3L_2040596_SNP [dm3] 3L_2040596_SNP [dm6]	A	T	4.827e^-4	0.872	INTRON sls
2R	11178976	2R_11178976_SNP [dm3] 2R_15291471_SNP [dm6]	T	A	4.829e^-4	0.872	UPSTREAM Trpm INTRON Trpm
2R	16031004	2R_16031004_DEL [dm3] 2R_20143499_DEL [dm6]	TTT	T	4.833e^-4	0.872	INTERGENIC
3L	14950589	3L_14950589_SNP [dm3] 3L_14957489_SNP [dm6]	G	A	4.838e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	10081646	3L_10081646_SNP [dm3] 3L_10088546_SNP [dm6]	G	A	4.845e^-4	0.872	INTRON dpr6 & 1 other
3L	686759	3L_686759_SNP [dm3] 3L_686759_SNP [dm6]	C	T	4.849e^-4	0.872	SYNONYMOUS_CODING CG3344	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	14556423	3R_14556423_SNP [dm3] 3R_18730701_SNP [dm6]	C	T	4.857e^-4	0.872	INTRON Cha
3L	4098973	3L_4098973_SNP [dm3] 3L_4098973_SNP [dm6]	T	G	4.866e^-4	0.872	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13247199	2L_13247199_SNP [dm3] 2L_13247199_SNP [dm6]	C	T	4.874e^-4	0.872	INTRON CG16820	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7473140	3L_7473140_SNP [dm3] 3L_7480040_SNP [dm6]	T	A	4.887e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_inv
3R	22224032	3R_22224032_SNP [dm3] 3R_26398310_SNP [dm6]	T	A	4.922e^-4	0.872	INTERGENIC
X	2326765	X_2326765_INS [dm3] X_2432732_INS [dm6]	G	GCCGATCGA	4.924e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	15289869	2R_15289869_SNP [dm3] 2R_19402364_SNP [dm6]	C	T	4.937e^-4	0.872	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15290322	2R_15290322_SNP [dm3] 2R_19402817_SNP [dm6]	G	C	4.937e^-4	0.872	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12337390	3R_12337390_SNP [dm3] 3R_16511668_SNP [dm6]	T	G	4.944e^-4	0.872	INTRON CG42342
3L	16453617	3L_16453617_SNP [dm3] 3L_16460517_SNP [dm6]	G	A	4.948e^-4	0.872	INTRON CG33158
X	9297985	X_9297985_SNP [dm3] X_9403952_SNP [dm6]	C	T	4.970e^-4	0.872	INTRON mgl
2R	10810397	2R_10810397_SNP [dm3] 2R_14922892_SNP [dm6]	T	A	4.982e^-4	0.872	INTRON CG10249
3R	24598911	3R_24598911_SNP [dm3] 3R_28773189_SNP [dm6]	A	G	4.991e^-4	0.872	INTERGENIC
3L	16453490	3L_16453490_SNP [dm3] 3L_16460390_SNP [dm6]	C	G	5.013e^-4	0.872	INTRON CG33158
3L	8541160	3L_8541160_SNP [dm3] 3L_8548060_SNP [dm6]	A	T	5.015e^-4	0.872	INTRON rhea	TF binding site mE1_TFBS_inv mE1_TFBS_Trl
3L	19215246	3L_19215246_SNP [dm3] 3L_19222146_SNP [dm6]	C	G	5.021e^-4	0.872	INTRON fz2
3L	7899210	3L_7899210_INS [dm3] 3L_7906110_INS [dm6]	A	AA	5.024e^-4	0.872	INTRON pbl
3L	6520398	3L_6520398_SNP [dm3] 3L_6527298_SNP [dm6]	G	C	5.030e^-4	0.872	INTRON sfl
3R	14556417	3R_14556417_SNP [dm3] 3R_18730695_SNP [dm6]	A	G	5.037e^-4	0.872	INTRON Cha
2R	16871851	2R_16871851_DEL [dm3] 2R_20984346_DEL [dm6]	TATATT	CGCA	5.038e^-4	0.872	UTR_3_PRIME CG15651 DOWNSTREAM CG9313	TF binding site mE1_TFBS_chinmo
2R	17369394	2R_17369394_SNP [dm3] 2R_21481889_SNP [dm6]	T	G	5.039e^-4	0.872	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5073135	2R_5073135_SNP [dm3] 2R_9185630_SNP [dm6]	G	C	5.055e^-4	0.872	NON_SYNONYMOUS_CODING ltd INTRON ltd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15921515	3L_15921515_SNP [dm3] 3L_15928415_SNP [dm6]	A	C	5.055e^-4	0.872	INTRON Pka-C3
2R	17318915	2R_17318915_SNP [dm3] 2R_21431410_SNP [dm6]	C	G	5.058e^-4	0.872	INTRON Sdc
2L	14550367	2L_14550367_SNP [dm3] 2L_14550367_SNP [dm6]	A	C	5.075e^-4	0.872	DOWNSTREAM CR44853 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14550460	2L_14550460_SNP [dm3] 2L_14550460_SNP [dm6]	C	A	5.075e^-4	0.872	EXON CR44853
2L	14550463	2L_14550463_SNP [dm3] 2L_14550463_SNP [dm6]	C	T	5.075e^-4	0.872	EXON CR44853	TF binding site BDTNP1_TFBS_twi
3R	4375323	3R_4375323_SNP [dm3] 3R_8549601_SNP [dm6]	G	A	5.080e^-4	0.872	INTERGENIC
3L	18090784	3L_18090784_SNP [dm3] 3L_18097684_SNP [dm6]	A	T	5.080e^-4	0.872	INTRON CG13698
2L	19679751	2L_19679751_SNP [dm3] 2L_19679751_SNP [dm6]	C	A	5.081e^-4	0.872	INTRON Lar
3L	7104549	3L_7104549_SNP [dm3] 3L_7111449_SNP [dm6]	A	G	5.087e^-4	0.872	SYNONYMOUS_CODING form3
3L	4733395	3L_4733395_SNP [dm3] 3L_4733395_SNP [dm6]	G	C	5.093e^-4	0.872	INTRON RhoGEF64C
3L	18355645	3L_18355645_SNP [dm3] 3L_18362545_SNP [dm6]	C	T	5.093e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	832830	3L_832830_SNP [dm3] 3L_832830_SNP [dm6]	C	G	5.094e^-4	0.872	SYNONYMOUS_CODING CG13900 UPSTREAM snoRNA:Psi18S-110 & 1 other DOWNSTREAM snoRNA:Psi18S-1086	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	687581	3L_687581_INS [dm3] 3L_687581_INS [dm6]	A	AACTCTTGCCATCTCATGGG...	5.095e^-4	0.872	DOWNSTREAM CG32483 INTRON CG3344
2L	9848457	2L_9848457_SNP [dm3] 2L_9848457_SNP [dm6]	A	G	5.100e^-4	0.872	INTRON nAChRalpha6 EXON CR43766
X	17639871	X_17639871_SNP [dm3] X_17745838_SNP [dm6]	G	A	5.101e^-4	0.872	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	19232457	2R_19232457_SNP [dm3] 2R_23344934_SNP [dm6]	T	C	5.116e^-4	0.872	NON_SYNONYMOUS_CODING CG3502
3R	16016134	3R_16016134_SNP [dm3] 3R_20190412_SNP [dm6]	C	T	5.117e^-4	0.872	INTERGENIC
X	2096584	X_2096584_SNP [dm3] X_2202551_SNP [dm6]	C	T	5.123e^-4	0.872	SYNONYMOUS_CODING CG18031 UPSTREAM CR43637 INTRON Mct1	TF binding site mE1_TFBS_chinmo
3R	24562100	3R_24562100_DEL [dm3] 3R_28736378_DEL [dm6]	GG	G	5.129e^-4	0.872	DOWNSTREAM AstA-R2 INTERGENIC
2L	1952172	2L_1952172_SNP [dm3] 2L_1952172_SNP [dm6]	G	T	5.132e^-4	0.872	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13390561	3L_13390561_SNP [dm3] 3L_13397461_SNP [dm6]	A	G	5.136e^-4	0.872	SPLICE_SITE_REGION sens INTRON sens
2R	11988067	2R_11988067_SNP [dm3] 2R_16100562_SNP [dm6]	G	A	5.144e^-4	0.872	SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2L	4819217	2L_4819217_SNP [dm3] 2L_4819217_SNP [dm6]	C	T	5.146e^-4	0.872	UPSTREAM CG3225 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4819230	2L_4819230_SNP [dm3] 2L_4819230_SNP [dm6]	C	A	5.146e^-4	0.872	UPSTREAM CG3225 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4819493	2L_4819493_SNP [dm3] 2L_4819493_SNP [dm6]	G	A	5.146e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4819497	2L_4819497_SNP [dm3] 2L_4819497_SNP [dm6]	G	T	5.146e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15189094	2R_15189094_SNP [dm3] 2R_19301589_SNP [dm6]	A	G	5.149e^-4	0.872	INTRON Tab2	TF binding site mE1_TFBS_inv
3L	2548614	3L_2548614_SNP [dm3] 3L_2548614_SNP [dm6]	C	T	5.165e^-4	0.872	INTRON Spn
2L	13156990	2L_13156990_SNP [dm3] 2L_13156990_SNP [dm6]	A	C	5.186e^-4	0.872	INTERGENIC
X	13222808	X_13222808_SNP [dm3] X_13328775_SNP [dm6]	C	A	5.189e^-4	0.872	UTR_3_PRIME IP3K2
2R	12291278	2R_12291278_SNP [dm3] 2R_16403773_SNP [dm6]	A	T	5.213e^-4	0.872	INTRON Sema-2b
3R	27511097	3R_27511097_SNP [dm3] 3R_31685375_SNP [dm6]	C	T	5.219e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22646961	3R_22646961_SNP [dm3] 3R_26821239_SNP [dm6]	C	A	5.227e^-4	0.872	INTRON Tl
2R	4346230	2R_4346230_SNP [dm3] 2R_8458725_SNP [dm6]	C	T	5.254e^-4	0.872	UPSTREAM Mal-A4 & 1 other INTERGENIC
X	20041483	X_20041483_SNP [dm3] X_20147450_SNP [dm6]	C	A	5.262e^-4	0.872	UPSTREAM CG9572 INTERGENIC
2L	20833053	2L_20833053_SNP [dm3] 2L_20833053_SNP [dm6]	G	C	5.265e^-4	0.872	SYNONYMOUS_CODING Oseg5 DOWNSTREAM CG31674	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18035343	2L_18035343_SNP [dm3] 2L_18035343_SNP [dm6]	A	G	5.271e^-4	0.872	INTRON rdo
2R	9559975	2R_9559975_SNP [dm3] 2R_13672470_SNP [dm6]	G	C	5.272e^-4	0.872	UPSTREAM CR45031 DOWNSTREAM CG18368 INTRON fas
2L	2739715	2L_2739715_SNP [dm3] 2L_2739715_SNP [dm6]	T	A	5.280e^-4	0.872	UTR_3_PRIME CG31689 UPSTREAM Hrs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2739903	2L_2739903_SNP [dm3] 2L_2739903_SNP [dm6]	A	G	5.280e^-4	0.872	UPSTREAM Hrs DOWNSTREAM CG31689 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2739905	2L_2739905_SNP [dm3] 2L_2739905_SNP [dm6]	A	C	5.280e^-4	0.872	UPSTREAM Hrs DOWNSTREAM CG31689 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2739916	2L_2739916_SNP [dm3] 2L_2739916_SNP [dm6]	C	A	5.280e^-4	0.872	UPSTREAM Hrs DOWNSTREAM CG31689 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15459787	2R_15459787_SNP [dm3] 2R_19572282_SNP [dm6]	A	T	5.285e^-4	0.872	INTRON sm	TF binding site mE1_TFBS_HSA
2R	20530390	2R_20530390_SNP [dm3] 2R_24642867_SNP [dm6]	A	G	5.292e^-4	0.872	UPSTREAM CG4781 INTERGENIC
2R	18608948	2R_18608948_SNP [dm3] 2R_22721443_SNP [dm6]	A	G	5.293e^-4	0.872	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	651922	2L_651922_SNP [dm3] 2L_651922_SNP [dm6]	C	A	5.309e^-4	0.872	INTRON ds
3L	16281289	3L_16281289_SNP [dm3] 3L_16288189_SNP [dm6]	T	G	5.309e^-4	0.872	SYNONYMOUS_CODING CG13046
2L	1934022	2L_1934022_SNP [dm3] 2L_1934022_SNP [dm6]	G	A	5.316e^-4	0.872	SYNONYMOUS_CODING CG7337	TF binding site mE1_TFBS_cad
3L	12391506	3L_12391506_SNP [dm3] 3L_12398406_SNP [dm6]	C	A	5.320e^-4	0.872	SYNONYMOUS_CODING CG32104
2L	1999246	2L_1999246_SNP [dm3] 2L_1999246_SNP [dm6]	A	G	5.328e^-4	0.872	UPSTREAM CR43464 INTRON CG33543
2L	1999250	2L_1999250_SNP [dm3] 2L_1999250_SNP [dm6]	A	G	5.328e^-4	0.872	UPSTREAM CR43464 INTRON CG33543
2L	13046378	2L_13046378_SNP [dm3] 2L_13046378_SNP [dm6]	A	G	5.330e^-4	0.872	INTRON CG9932
3R	16062105	3R_16062105_SNP [dm3] 3R_20236383_SNP [dm6]	T	C	5.338e^-4	0.872	INTRON Nlg4
X	17074543	X_17074543_SNP [dm3] X_17180510_SNP [dm6]	C	A	5.351e^-4	0.872	INTRON baz
2R	7954463	2R_7954463_INS [dm3] 2R_12066958_INS [dm6]	C	CTT	5.354e^-4	0.872	INTRON CG8888	TF binding site mE1_TFBS_bab1
X	20566739	X_20566739_SNP [dm3] X_20695712_SNP [dm6]	C	A	5.356e^-4	0.872	INTRON run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	505171	3R_505171_SNP [dm3] 3R_4679449_SNP [dm6]	A	T	5.357e^-4	0.872	INTRON CG43427	TF binding site mE1_TFBS_kn
3L	7178036	3L_7178036_SNP [dm3] 3L_7184936_SNP [dm6]	T	C	5.365e^-4	0.872	INTRON Dscam2
3R	11443019	3R_11443019_SNP [dm3] 3R_15617297_SNP [dm6]	C	T	5.368e^-4	0.872	INTERGENIC
2R	12290817	2R_12290817_SNP [dm3] 2R_16403312_SNP [dm6]	T	A	5.371e^-4	0.872	INTRON Sema-2b
2R	12090447	2R_12090447_SNP [dm3] 2R_16202942_SNP [dm6]	C	G	5.372e^-4	0.872	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3R	14389129	3R_14389129_SNP [dm3] 3R_18563407_SNP [dm6]	T	A	5.382e^-4	0.872	DOWNSTREAM CG43210 & 1 other INTERGENIC
2L	17528275	2L_17528275_SNP [dm3] 2L_17528275_SNP [dm6]	C	G	5.383e^-4	0.872	SYNONYMOUS_CODING CG15144
2L	17528452	2L_17528452_SNP [dm3] 2L_17528452_SNP [dm6]	T	G	5.383e^-4	0.872	SYNONYMOUS_CODING CG15144 DOWNSTREAM CG15145
2L	15992517	2L_15992517_SNP [dm3] 2L_15992517_SNP [dm6]	T	C	5.389e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16201817	3R_16201817_SNP [dm3] 3R_20376095_SNP [dm6]	T	C	5.410e^-4	0.872	INTERGENIC
3R	16201878	3R_16201878_SNP [dm3] 3R_20376156_SNP [dm6]	T	C	5.410e^-4	0.872	INTERGENIC
X	10000652	X_10000652_SNP [dm3] X_10106619_SNP [dm6]	C	T	5.412e^-4	0.872	INTRON RhoU
2R	12565451	2R_12565451_SNP [dm3] 2R_16677946_SNP [dm6]	C	T	5.418e^-4	0.872	INTRON CG30463
2L	13681320	2L_13681320_INS [dm3] 2L_13681320_INS [dm6]	A	AA	5.421e^-4	0.872	INTRON CG31814
3R	8061660	3R_8061660_SNP [dm3] 3R_12235938_SNP [dm6]	T	C	5.421e^-4	0.872	NON_SYNONYMOUS_CODING Cyp313a2
2L	4048903	2L_4048903_SNP [dm3] 2L_4048903_SNP [dm6]	T	A	5.421e^-4	0.872	INTRON ed
2L	6154910	2L_6154910_SNP [dm3] 2L_6154910_SNP [dm6]	C	A	5.433e^-4	0.872	INTRON CG31639
X	9781858	X_9781858_INS [dm3] X_9887825_INS [dm6]	C	CA	5.434e^-4	0.872	DOWNSTREAM CG15249 INTERGENIC
3R	4367171	3R_4367171_SNP [dm3] 3R_8541449_SNP [dm6]	C	T	5.436e^-4	0.872	INTERGENIC
2R	16773747	2R_16773747_SNP [dm3] 2R_20886242_SNP [dm6]	G	T	5.442e^-4	0.872	INTRON otp
2L	15172579	2L_15172579_SNP [dm3] 2L_15172579_SNP [dm6]	A	C	5.464e^-4	0.872	INTRON CG4168
3R	25494970	3R_25494970_SNP [dm3] 3R_29669248_SNP [dm6]	G	A	5.469e^-4	0.872	NON_SYNONYMOUS_CODING ppk30 UPSTREAM ppk20	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	9011217	2L_9011217_SNP [dm3] 2L_9011217_SNP [dm6]	C	T	5.474e^-4	0.872	SYNONYMOUS_CODING CG9568 UPSTREAM CG13102
3R	5660260	3R_5660260_SNP [dm3] 3R_9834538_SNP [dm6]	G	T	5.478e^-4	0.872	INTRON Teh1
2R	14569975	2R_14569975_SNP [dm3] 2R_18682470_SNP [dm6]	G	A	5.492e^-4	0.872	SYNONYMOUS_CODING CG44434 START_GAINED CG44435 UTR_5_PRIME CG44435	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14719288	2R_14719288_SNP [dm3] 2R_18831783_SNP [dm6]	T	A	5.496e^-4	0.872	INTRON CG15082
2L	9677295	2L_9677295_SNP [dm3] 2L_9677295_SNP [dm6]	G	A	5.501e^-4	0.872	INTERGENIC
X	11186576	X_11186576_SNP [dm3] X_11292543_SNP [dm6]	G	A	5.513e^-4	0.872	INTRON CG44422
2R	6227701	2R_6227701_SNP [dm3] 2R_10340196_SNP [dm6]	C	A	5.520e^-4	0.872	SYNONYMOUS_CODING CG42732
2R	9560040	2R_9560040_SNP [dm3] 2R_13672535_SNP [dm6]	A	G	5.530e^-4	0.872	UPSTREAM CR45031 DOWNSTREAM CG18368 INTRON fas
3R	20515539	3R_20515539_SNP [dm3] 3R_24689817_SNP [dm6]	T	C	5.533e^-4	0.872	INTRON slo
3R	24600247	3R_24600247_SNP [dm3] 3R_28774525_SNP [dm6]	G	T	5.543e^-4	0.872	INTERGENIC
3L	11418425	3L_11418425_SNP [dm3] 3L_11425325_SNP [dm6]	A	G	5.545e^-4	0.872	SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
2R	10671898	2R_10671898_SNP [dm3] 2R_14784393_SNP [dm6]	G	A	5.547e^-4	0.872	INTRON kn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18389108	2R_18389108_SNP [dm3] 2R_22501603_SNP [dm6]	C	A	5.547e^-4	0.872	INTRON px	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18389109	2R_18389109_SNP [dm3] 2R_22501604_SNP [dm6]	C	G	5.547e^-4	0.872	INTRON px	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23540183	3R_23540183_SNP [dm3] 3R_27714461_SNP [dm6]	G	A	5.548e^-4	0.872	INTERGENIC
3R	16631319	3R_16631319_SNP [dm3] 3R_20805597_SNP [dm6]	A	C	5.555e^-4	0.872	DOWNSTREAM Syp INTRON Syp	TF binding site mE1_TFBS_inv
2L	2467733	2L_2467733_SNP [dm3] 2L_2467733_SNP [dm6]	G	A	5.566e^-4	0.872	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cad
2L	2467749	2L_2467749_SNP [dm3] 2L_2467749_SNP [dm6]	A	G	5.566e^-4	0.872	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cad
2L	2467783	2L_2467783_SNP [dm3] 2L_2467783_SNP [dm6]	C	T	5.566e^-4	0.872	INTERGENIC	enhancer FlyBase TF binding site mE1_TFBS_cad
3L	10547978	3L_10547978_SNP [dm3] 3L_10554878_SNP [dm6]	A	G	5.581e^-4	0.872	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18636718	3L_18636718_SNP [dm3] 3L_18643618_SNP [dm6]	T	C	5.590e^-4	0.872	INTRON MYPT-75D
2L	9804538	2L_9804538_SNP [dm3] 2L_9804538_SNP [dm6]	T	A	5.591e^-4	0.872	INTRON nAChRalpha6
3R	14556404	3R_14556404_SNP [dm3] 3R_18730682_SNP [dm6]	T	C	5.593e^-4	0.872	INTRON Cha
2L	14593250	2L_14593250_SNP [dm3] 2L_14593250_SNP [dm6]	T	G	5.599e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18943444	3R_18943444_DEL [dm3] 3R_23117722_DEL [dm6]	CGA	C	5.604e^-4	0.872	UTR_5_PRIME Rassf UPSTREAM CenB1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	27603055	3R_27603055_SNP [dm3] 3R_31777333_SNP [dm6]	C	T	5.609e^-4	0.872	START_GAINED faf UTR_5_PRIME faf UPSTREAM faf & 1 other INTRON faf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12649308	2L_12649308_SNP [dm3] 2L_12649308_SNP [dm6]	G	A	5.610e^-4	0.872	INTERGENIC
2L	12649854	2L_12649854_SNP [dm3] 2L_12649854_SNP [dm6]	C	T	5.610e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12650877	2L_12650877_SNP [dm3] 2L_12650877_SNP [dm6]	G	A	5.610e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6679887	3L_6679887_SNP [dm3] 3L_6686787_SNP [dm6]	C	T	5.616e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15216344	2L_15216344_SNP [dm3] 2L_15216344_SNP [dm6]	A	T	5.626e^-4	0.872	DOWNSTREAM CG43230 INTERGENIC
2R	11767616	2R_11767616_SNP [dm3] 2R_15880111_SNP [dm6]	G	C	5.628e^-4	0.872	INTRON sli
3L	1183615	3L_1183615_SNP [dm3] 3L_1183615_SNP [dm6]	G	A	5.641e^-4	0.872	INTERGENIC
2L	21261260	2L_21261260_SNP [dm3] 2L_21261260_SNP [dm6]	C	T	5.659e^-4	0.872	NON_SYNONYMOUS_CODING l_2_k14505	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	13767928	2L_13767928_SNP [dm3] 2L_13767928_SNP [dm6]	C	T	5.674e^-4	0.872	INTRON TM9SF4
3R	19214003	3R_19214003_SNP [dm3] 3R_23388281_SNP [dm6]	T	G	5.691e^-4	0.872	DOWNSTREAM CG31515 INTERGENIC	TF binding site mE1_TFBS_inv
2R	17855066	2R_17855066_SNP [dm3] 2R_21967561_SNP [dm6]	G	T	5.701e^-4	0.872	INTRON ppk9
2R	3049920	2R_3049920_SNP [dm3] 2R_7162415_SNP [dm6]	T	A	5.728e^-4	0.872	INTRON pk
2L	9804537	2L_9804537_SNP [dm3] 2L_9804537_SNP [dm6]	A	C	5.733e^-4	0.872	INTRON nAChRalpha6
3R	25768637	3R_25768637_SNP [dm3] 3R_29942915_SNP [dm6]	A	C	5.743e^-4	0.872	SYNONYMOUS_CODING CG15523
3L	11849002	3L_11849002_SNP [dm3] 3L_11855902_SNP [dm6]	A	T	5.754e^-4	0.872	INTRON CG44837
2L	16276662	2L_16276662_SNP [dm3] 2L_16276662_SNP [dm6]	T	A	5.762e^-4	0.872	INTRON crp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	2247808	3R_2247808_SNP [dm3] 3R_6422086_SNP [dm6]	G	T	5.767e^-4	0.872	INTRON gpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24612319	3R_24612319_SNP [dm3] 3R_28786597_SNP [dm6]	C	T	5.780e^-4	0.872	INTERGENIC
3R	20546737	3R_20546737_SNP [dm3] 3R_24721015_SNP [dm6]	T	A	5.781e^-4	0.872	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10806474	2L_10806474_SNP [dm3] 2L_10806474_SNP [dm6]	T	C	5.783e^-4	0.872	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_chinmo
3L	11473395	3L_11473395_SNP [dm3] 3L_11480295_SNP [dm6]	A	G	5.783e^-4	0.872	INTERGENIC	TF binding site mE1_TFBS_inv
3L	686846	3L_686846_SNP [dm3] 3L_686846_SNP [dm6]	T	C	5.795e^-4	0.872	SYNONYMOUS_CODING CG3344	TF binding site mE1_TFBS_sens
3R	22025589	3R_22025589_SNP [dm3] 3R_26199867_SNP [dm6]	G	C	5.798e^-4	0.872	INTRON CR44320	TF binding site BDTNP1_TFBS_twi
X	11621689	X_11621689_SNP [dm3] X_11727656_SNP [dm6]	G	A	5.802e^-4	0.872	INTRON CG15221 & 4 others
3L	681095	3L_681095_SNP [dm3] 3L_681095_SNP [dm6]	T	C	5.807e^-4	0.872	SYNONYMOUS_CODING CG3386 UPSTREAM CG17129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
3R	13409821	3R_13409821_SNP [dm3] 3R_17584099_SNP [dm6]	A	C	5.808e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	22553145	3R_22553145_SNP [dm3] 3R_26727423_SNP [dm6]	G	A	5.812e^-4	0.872	UPSTREAM CG14246 DOWNSTREAM CG14244 INTRON CG14246
2L	836635	2L_836635_SNP [dm3] 2L_836635_SNP [dm6]	A	T	5.815e^-4	0.872	NON_SYNONYMOUS_CODING drongo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18616638	3R_18616638_SNP [dm3] 3R_22790916_SNP [dm6]	A	C	5.815e^-4	0.872	SYNONYMOUS_CODING CG7029	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20380005	2R_20380005_SNP [dm3] 2R_24492482_SNP [dm6]	A	G	5.830e^-4	0.872	SYNONYMOUS_CODING CG13589 DOWNSTREAM CG13590
2R	14785809	2R_14785809_SNP [dm3] 2R_18898304_SNP [dm6]	A	G	5.830e^-4	0.872	INTRON sano
2L	9914487	2L_9914487_SNP [dm3] 2L_9914487_SNP [dm6]	G	A	5.834e^-4	0.872	SYNONYMOUS_CODING Srp54 UPSTREAM yip2
2R	15423077	2R_15423077_SNP [dm3] 2R_19535572_SNP [dm6]	C	T	5.836e^-4	0.872	INTRON sm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9921002	3R_9921002_SNP [dm3] 3R_14095280_SNP [dm6]	G	T	5.838e^-4	0.872	INTRON CCHa1
3R	24428157	3R_24428157_SNP [dm3] 3R_28602435_SNP [dm6]	G	T	5.845e^-4	0.872	UPSTREAM snoRNA:Psi28S-3405d & 1 other DOWNSTREAM snoRNA:Psi28S-3405a & 3 others INTRON Hrb98DE EXON snoRNA:Psi28S-3305b	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	17803775	2L_17803775_DEL [dm3] 2L_17803775_DEL [dm6]	CA	C	5.846e^-4	0.872	INTRON CadN2
2L	1720844	2L_1720844_SNP [dm3] 2L_1720844_SNP [dm6]	G	T	5.853e^-4	0.872	INTRON Rim2
2R	5308267	2R_5308267_SNP [dm3] 2R_9420762_SNP [dm6]	T	G	5.879e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	18404542	2R_18404542_SNP [dm3] 2R_22517037_SNP [dm6]	A	G	5.899e^-4	0.872	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24289848	3R_24289848_SNP [dm3] 3R_28464126_SNP [dm6]	C	T	5.908e^-4	0.872	SYNONYMOUS_CODING beat-VI
X	2101515	X_2101515_INS [dm3] X_2207482_INS [dm6]	G	GCTGAAGAATTGGGTCAAGG...	5.917e^-4	0.872	INTRON msta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9912026	3L_9912026_SNP [dm3] 3L_9918926_SNP [dm6]	C	T	5.919e^-4	0.872	INTRON CG34356
2L	6011352	2L_6011352_SNP [dm3] 2L_6011352_SNP [dm6]	G	A	5.921e^-4	0.872	UPSTREAM CG9098 INTRON CG9098	TF binding site mE1_TFBS_Trl
2L	6012150	2L_6012150_SNP [dm3] 2L_6012150_SNP [dm6]	G	A	5.921e^-4	0.872	UPSTREAM CG9098 DOWNSTREAM H2.0 INTRON CG9098
X	13440493	X_13440493_SNP [dm3] X_13546460_SNP [dm6]	T	G	5.922e^-4	0.872	INTERGENIC
X	13440505	X_13440505_DEL [dm3] X_13546472_DEL [dm6]	CCG	T	5.922e^-4	0.872	INTERGENIC
X	13440511	X_13440511_DEL [dm3] X_13546478_DEL [dm6]	GT	A	5.922e^-4	0.872	INTERGENIC
X	13440515	X_13440515_SNP [dm3] X_13546482_SNP [dm6]	T	A	5.922e^-4	0.872	INTERGENIC
2L	12660556	2L_12660556_SNP [dm3] 2L_12660556_SNP [dm6]	A	G	5.928e^-4	0.872	NON_SYNONYMOUS_CODING pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10927414	2R_10927414_SNP [dm3] 2R_15039909_SNP [dm6]	C	A	5.928e^-4	0.872	SYNONYMOUS_CODING hbs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10560041	2R_10560041_INS [dm3] 2R_14672536_INS [dm6]	A	ATTTTTC	5.932e^-4	0.872	DOWNSTREAM CG12866 INTRON mspo
X	2096435	X_2096435_SNP [dm3] X_2202402_SNP [dm6]	T	C	5.942e^-4	0.872	NON_SYNONYMOUS_CODING CG18031 UPSTREAM CR43637 INTRON Mct1
3R	18129439	3R_18129439_SNP [dm3] 3R_22303717_SNP [dm6]	T	C	5.943e^-4	0.872	UTR_3_PRIME CG7084
3L	13272545	3L_13272545_SNP [dm3] 3L_13279445_SNP [dm6]	C	G	5.955e^-4	0.872	UTR_3_PRIME caps UPSTREAM tRNA:CR32123:Psi
2L	8233386	2L_8233386_SNP [dm3] 2L_8233386_SNP [dm6]	T	G	5.960e^-4	0.872	INTRON Pvr	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	8589828	3R_8589828_SNP [dm3] 3R_12764106_SNP [dm6]	G	A	5.963e^-4	0.872	INTRON beat-Vc
X	20796739	X_20796739_SNP [dm3] X_20925712_SNP [dm6]	G	A	5.967e^-4	0.872	UPSTREAM shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12334076	3R_12334076_SNP [dm3] 3R_16508354_SNP [dm6]	T	G	5.972e^-4	0.872	INTRON CG42342	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	22006741	3R_22006741_SNP [dm3] 3R_26181019_SNP [dm6]	C	T	5.984e^-4	0.872	INTRON CG31323
3R	8590367	3R_8590367_SNP [dm3] 3R_12764645_SNP [dm6]	G	T	5.986e^-4	0.872	INTRON beat-Vc
2R	6745453	2R_6745453_SNP [dm3] 2R_10857948_SNP [dm6]	C	A	5.996e^-4	0.872	INTRON CG30015
X	12508086	X_12508086_SNP [dm3] X_12614053_SNP [dm6]	T	C	6.024e^-4	0.872	SYNONYMOUS_CODING CG2543 INTRON CR45621 EXON CR45621
2L	11402233	2L_11402233_SNP [dm3] 2L_11402233_SNP [dm6]	T	G	6.026e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
2L	11404461	2L_11404461_INS [dm3] 2L_11404461_INS [dm6]	C	CC	6.026e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
2L	11404542	2L_11404542_SNP [dm3] 2L_11404542_SNP [dm6]	T	C	6.026e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
2L	11404691	2L_11404691_SNP [dm3] 2L_11404691_SNP [dm6]	A	G	6.026e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
2L	11404797	2L_11404797_SNP [dm3] 2L_11404797_SNP [dm6]	A	G	6.026e^-4	0.872	INTERGENIC	regulatory region REDfly_CRMs
3R	16058551	3R_16058551_SNP [dm3] 3R_20232829_SNP [dm6]	C	G	6.026e^-4	0.872	INTRON Nlg4
3R	16063547	3R_16063547_SNP [dm3] 3R_20237825_SNP [dm6]	C	T	6.026e^-4	0.872	INTRON Nlg4
3R	16063689	3R_16063689_SNP [dm3] 3R_20237967_SNP [dm6]	G	A	6.026e^-4	0.872	SYNONYMOUS_CODING Nlg4
3R	16064121	3R_16064121_SNP [dm3] 3R_20238399_SNP [dm6]	A	T	6.026e^-4	0.872	INTRON Nlg4
3R	16064123	3R_16064123_SNP [dm3] 3R_20238401_SNP [dm6]	T	G	6.026e^-4	0.872	INTRON Nlg4
3R	16064355	3R_16064355_SNP [dm3] 3R_20238633_SNP [dm6]	G	A	6.026e^-4	0.872	INTRON Nlg4
3R	16064369	3R_16064369_SNP [dm3] 3R_20238647_SNP [dm6]	T	A	6.026e^-4	0.872	INTRON Nlg4
3R	16064397	3R_16064397_SNP [dm3] 3R_20238675_SNP [dm6]	A	T	6.026e^-4	0.872	INTRON Nlg4
3R	4353302	3R_4353302_SNP [dm3] 3R_8527580_SNP [dm6]	G	A	6.026e^-4	0.872	DOWNSTREAM CG31259 & 1 other INTERGENIC
3R	4381966	3R_4381966_SNP [dm3] 3R_8556244_SNP [dm6]	A	G	6.026e^-4	0.872	INTERGENIC
3R	4390575	3R_4390575_SNP [dm3] 3R_8564853_SNP [dm6]	T	A	6.026e^-4	0.872	INTRON Cenp-C	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	4391033	3R_4391033_SNP [dm3] 3R_8565311_SNP [dm6]	G	A	6.026e^-4	0.872	SYNONYMOUS_CODING Cenp-C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	4403404	3R_4403404_SNP [dm3] 3R_8577682_SNP [dm6]	G	A	6.026e^-4	0.872	UPSTREAM 5-HT2B INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13891486	X_13891486_SNP [dm3] X_13997453_SNP [dm6]	A	G	6.026e^-4	0.872	INTRON ben	TF binding site BDTNP1_TFBS_dl
2R	10661540	2R_10661540_SNP [dm3] 2R_14774035_SNP [dm6]	T	G	6.030e^-4	0.872	INTRON kn

By genomic position
Variant impact
Gene name

rep phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results