DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.700e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.03291

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.4535	0.0348

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1233 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	6739540	2R_6739540_SNP [dm3] 2R_10852035_SNP [dm6]	T	C	1.367e^-6	0.935	INTRON CG30015
3L	8684329	3L_8684329_SNP [dm3] 3L_8691229_SNP [dm6]	G	A	2.710e^-6	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1726719	2L_1726719_SNP [dm3] 2L_1726719_SNP [dm6]	A	C	5.731e^-6	0.935	INTRON Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9867005	2R_9867005_SNP [dm3] 2R_13979500_SNP [dm6]	A	C	7.027e^-6	0.935	START_GAINED CG6701 UTR_5_PRIME CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2554573	3L_2554573_SNP [dm3] 3L_2554573_SNP [dm6]	A	T	7.332e^-6	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
2L	16473339	2L_16473339_SNP [dm3] 2L_16473339_SNP [dm6]	G	A	1.026e^-5	0.935	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
3L	1935129	3L_1935129_SNP [dm3] 3L_1935129_SNP [dm6]	G	A	1.042e^-5	0.935	SYNONYMOUS_CODING CG5687
3R	10749642	3R_10749642_SNP [dm3] 3R_14923920_SNP [dm6]	G	A	1.174e^-5	0.935	UPSTREAM CR45598 DOWNSTREAM Sdr INTERGENIC
3R	2467572	3R_2467572_SNP [dm3] 3R_6641850_SNP [dm6]	T	C	1.223e^-5	0.935	SPLICE_SITE_REGION CG31286 DOWNSTREAM CG1315 INTRON CG31286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14953507	3L_14953507_SNP [dm3] 3L_14960407_SNP [dm6]	T	G	1.460e^-5	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	14953532	3L_14953532_SNP [dm3] 3L_14960432_SNP [dm6]	G	A	1.460e^-5	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	2554303	3R_2554303_INS [dm3] 3R_6728581_INS [dm6]	C	CC	1.480e^-5	0.935	INTRON pb	regulatory region FlyBase REDfly_CRMs
3R	4364876	3R_4364876_SNP [dm3] 3R_8539154_SNP [dm6]	A	G	1.903e^-5	0.935	INTERGENIC
3L	12406416	3L_12406416_SNP [dm3] 3L_12413316_SNP [dm6]	T	G	1.964e^-5	0.935	INTRON CG32103
2L	19268665	2L_19268665_SNP [dm3] 2L_19268665_SNP [dm6]	T	A	2.036e^-5	0.935	DOWNSTREAM CR44190 INTERGENIC
3L	14953420	3L_14953420_SNP [dm3] 3L_14960320_SNP [dm6]	A	G	2.048e^-5	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	10251255	2L_10251255_SNP [dm3] 2L_10251255_SNP [dm6]	T	C	2.085e^-5	0.935	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5518426	2L_5518426_SNP [dm3] 2L_5518426_SNP [dm6]	C	G	2.101e^-5	0.935	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	13045522	2R_13045522_SNP [dm3] 2R_17158017_SNP [dm6]	A	G	2.150e^-5	0.935	SYNONYMOUS_CODING CG17287 DOWNSTREAM CG17290 & 1 other
3L	7737104	3L_7737104_SNP [dm3] 3L_7744004_SNP [dm6]	G	A	2.171e^-5	0.935	UPSTREAM Snmp2 INTRON CG32373
2R	17685916	2R_17685916_SNP [dm3] 2R_21798411_SNP [dm6]	G	A	2.290e^-5	0.935	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14551297	X_14551297_SNP [dm3] X_14657264_SNP [dm6]	C	A	2.792e^-5	0.935	INTERGENIC
X	3758054	X_3758054_SNP [dm3] X_3864021_SNP [dm6]	A	G	2.977e^-5	0.935	NON_SYNONYMOUS_CODING yin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12406434	3L_12406434_SNP [dm3] 3L_12413334_SNP [dm6]	T	C	3.077e^-5	0.935	INTRON CG32103
3L	12406414	3L_12406414_SNP [dm3] 3L_12413314_SNP [dm6]	G	T	3.212e^-5	0.935	INTRON CG32103
2R	13044615	2R_13044615_SNP [dm3] 2R_17157110_SNP [dm6]	C	T	3.274e^-5	0.935	UTR_3_PRIME CG17290 & 1 other
3R	14294275	3R_14294275_SNP [dm3] 3R_18468553_SNP [dm6]	G	C	3.515e^-5	0.935	INTRON fru
2R	6741630	2R_6741630_SNP [dm3] 2R_10854125_SNP [dm6]	G	A	3.539e^-5	0.935	UTR_5_PRIME CG30015 INTRON CG30015 EXON CR45136
3L	16454533	3L_16454533_DEL [dm3] 3L_16461433_DEL [dm6]	TTACGTT	T	3.578e^-5	0.935	INTRON CG33158
2R	6285622	2R_6285622_SNP [dm3] 2R_10398117_SNP [dm6]	T	A	3.687e^-5	0.935	INTRON CG42732
3L	5304768	3L_5304768_SNP [dm3] 3L_5311668_SNP [dm6]	C	T	3.792e^-5	0.935	INTERGENIC
2R	4077636	2R_4077636_SNP [dm3] 2R_8190131_SNP [dm6]	C	A	3.970e^-5	0.935	INTRON LRP1
3R	2449286	3R_2449286_SNP [dm3] 3R_6623564_SNP [dm6]	G	A	4.023e^-5	0.935	INTERGENIC
2L	6752117	2L_6752117_SNP [dm3] 2L_6752117_SNP [dm6]	T	C	4.321e^-5	0.935	INTRON CG11221
X	3765453	X_3765453_SNP [dm3] X_3871420_SNP [dm6]	T	C	4.334e^-5	0.935	UPSTREAM CG2930 INTRON yin & 1 other	TF binding site mE1_TFBS_cnc
3R	2651113	3R_2651113_SNP [dm3] 3R_6825391_SNP [dm6]	T	C	4.520e^-5	0.935	SYNONYMOUS_CODING Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	1081478	2R_1081478_SNP [dm3] 2R_5193973_SNP [dm6]	T	C	4.697e^-5	0.935	INTRON Nipped-A	transposable element FlyBase
2R	4727026	2R_4727026_SNP [dm3] 2R_8839521_SNP [dm6]	A	G	4.915e^-5	0.935	INTRON sns
X	3759373	X_3759373_SNP [dm3] X_3865340_SNP [dm6]	T	G	5.166e^-5	0.935	INTRON yin	TF binding site mE1_TFBS_HSA
3L	18221526	3L_18221526_SNP [dm3] 3L_18228426_SNP [dm6]	T	C	5.386e^-5	0.935	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1664316	2L_1664316_SNP [dm3] 2L_1664316_SNP [dm6]	A	T	5.486e^-5	0.935	INTRON chinmo
X	3108154	X_3108154_INS [dm3] X_3214121_INS [dm6]	T	TT	5.747e^-5	0.935	INTRON dnc
2R	11608247	2R_11608247_SNP [dm3] 2R_15720742_SNP [dm6]	T	A	5.781e^-5	0.935	INTERGENIC
3R	2344888	3R_2344888_DEL [dm3] 3R_6519166_DEL [dm6]	CAATAAACAATCAAATAAAA...	C	5.855e^-5	0.935	INTERGENIC
3R	2378274	3R_2378274_SNP [dm3] 3R_6552552_SNP [dm6]	G	A	5.855e^-5	0.935	INTRON dpr11
3L	12406363	3L_12406363_SNP [dm3] 3L_12413263_SNP [dm6]	T	A	5.859e^-5	0.935	INTRON CG32103
3L	12406380	3L_12406380_SNP [dm3] 3L_12413280_SNP [dm6]	G	A	5.859e^-5	0.935	INTRON CG32103
3R	2434700	3R_2434700_SNP [dm3] 3R_6608978_SNP [dm6]	G	A	5.885e^-5	0.935	UPSTREAM glob2 INTERGENIC
2L	16594277	2L_16594277_SNP [dm3] 2L_16594277_SNP [dm6]	T	A	5.899e^-5	0.935	INTRON CG42389
2R	13044562	2R_13044562_SNP [dm3] 2R_17157057_SNP [dm6]	T	G	5.912e^-5	0.935	UTR_3_PRIME CG17290 & 1 other
2L	1726702	2L_1726702_SNP [dm3] 2L_1726702_SNP [dm6]	T	G	5.919e^-5	0.935	INTRON Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5664449	3L_5664449_SNP [dm3] 3L_5671349_SNP [dm6]	A	C	5.922e^-5	0.935	INTRON sif
2L	17492023	2L_17492023_INS [dm3] 2L_17492023_INS [dm6]	C	CAC	5.997e^-5	0.935	UTR_5_PRIME qua INTRON qua
3L	2521514	3L_2521514_DEL [dm3] 3L_2521514_DEL [dm6]	TCCAG	T	6.035e^-5	0.935	INTRON Spn
2L	8326689	2L_8326689_SNP [dm3] 2L_8326689_SNP [dm6]	C	T	6.051e^-5	0.935	UPSTREAM CG14275 INTERGENIC
3R	4135967	3R_4135967_SNP [dm3] 3R_8310245_SNP [dm6]	A	T	6.315e^-5	0.935	UTR_5_PRIME CG11693 DOWNSTREAM CG11694 INTRON CG11693	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	6840057	2L_6840057_SNP [dm3] 2L_6840057_SNP [dm6]	C	T	6.395e^-5	0.935	INTERGENIC
3L	13392983	3L_13392983_SNP [dm3] 3L_13399883_SNP [dm6]	G	A	6.402e^-5	0.935	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13392998	3L_13392998_SNP [dm3] 3L_13399898_SNP [dm6]	A	G	6.402e^-5	0.935	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17285761	3L_17285761_SNP [dm3] 3L_17292661_SNP [dm6]	T	A	6.592e^-5	0.935	INTERGENIC
2R	9866986	2R_9866986_SNP [dm3] 2R_13979481_SNP [dm6]	T	G	6.693e^-5	0.935	UTR_5_PRIME CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15352735	3L_15352735_SNP [dm3] 3L_15359635_SNP [dm6]	A	G	6.727e^-5	0.935	INTERGENIC
3L	5985227	3L_5985227_SNP [dm3] 3L_5992127_SNP [dm6]	G	A	6.763e^-5	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17492187	2L_17492187_SNP [dm3] 2L_17492187_SNP [dm6]	C	T	6.852e^-5	0.935	UTR_5_PRIME qua INTRON qua
2L	13919977	2L_13919977_SNP [dm3] 2L_13919977_SNP [dm6]	C	T	6.866e^-5	0.935	DOWNSTREAM CG16886 INTRON Ance-3
3L	2554560	3L_2554560_SNP [dm3] 3L_2554560_SNP [dm6]	A	G	6.986e^-5	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3L	17201776	3L_17201776_SNP [dm3] 3L_17208676_SNP [dm6]	A	T	7.019e^-5	0.935	INTRON Rbp6	TF binding site mE1_TFBS_chinmo
3L	1900184	3L_1900184_SNP [dm3] 3L_1900184_SNP [dm6]	C	A	7.245e^-5	0.935	DOWNSTREAM CG1887 INTRON CG1887
2L	21880330	2L_21880330_SNP [dm3] 2L_21880330_SNP [dm6]	T	C	7.322e^-5	0.935	INTERGENIC
3L	2023313	3L_2023313_SNP [dm3] 3L_2023313_SNP [dm6]	A	G	7.588e^-5	0.935	SYNONYMOUS_CODING CG42356
3R	3996798	3R_3996798_SNP [dm3] 3R_8171076_SNP [dm6]	G	A	7.699e^-5	0.935	INTRON grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19268214	2L_19268214_SNP [dm3] 2L_19268214_SNP [dm6]	C	G	7.770e^-5	0.935	DOWNSTREAM CR44190 INTERGENIC
3L	6770609	3L_6770609_SNP [dm3] 3L_6777509_SNP [dm6]	T	C	7.783e^-5	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18476254	X_18476254_SNP [dm3] X_18582221_SNP [dm6]	G	A	7.834e^-5	0.935	INTERGENIC
2L	17491873	2L_17491873_SNP [dm3] 2L_17491873_SNP [dm6]	C	G	8.168e^-5	0.935	UTR_5_PRIME qua INTRON qua
3L	5305132	3L_5305132_SNP [dm3] 3L_5312032_SNP [dm6]	T	A	8.176e^-5	0.935	INTERGENIC
3L	9865381	3L_9865381_SNP [dm3] 3L_9872281_SNP [dm6]	A	T	8.224e^-5	0.935	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	9865383	3L_9865383_SNP [dm3] 3L_9872283_SNP [dm6]	G	T	8.224e^-5	0.935	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	9865398	3L_9865398_SNP [dm3] 3L_9872298_SNP [dm6]	A	T	8.224e^-5	0.935	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	17492167	2L_17492167_SNP [dm3] 2L_17492167_SNP [dm6]	G	A	8.345e^-5	0.935	UTR_5_PRIME qua INTRON qua
X	18476260	X_18476260_SNP [dm3] X_18582227_SNP [dm6]	G	A	8.371e^-5	0.935	INTERGENIC
2R	12489751	2R_12489751_SNP [dm3] 2R_16602246_SNP [dm6]	A	G	8.381e^-5	0.935	INTRON CG8303
2R	19704491	2R_19704491_SNP [dm3] 2R_23816968_SNP [dm6]	C	T	8.662e^-5	0.935	INTRON CG4797
3R	26810771	3R_26810771_SNP [dm3] 3R_30985049_SNP [dm6]	T	C	8.682e^-5	0.935	INTRON 5-HT7
3L	13844706	3L_13844706_SNP [dm3] 3L_13851606_SNP [dm6]	A	G	8.696e^-5	0.935	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	13844823	3L_13844823_SNP [dm3] 3L_13851723_SNP [dm6]	C	A	8.696e^-5	0.935	NON_SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	8656652	3L_8656652_SNP [dm3] 3L_8663552_SNP [dm6]	G	A	8.768e^-5	0.935	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10298640	2R_10298640_SNP [dm3] 2R_14411135_SNP [dm6]	A	G	8.819e^-5	0.935	SYNONYMOUS_CODING CG17385 UPSTREAM Sin1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2390341	3R_2390341_SNP [dm3] 3R_6564619_SNP [dm6]	C	A	8.862e^-5	0.935	INTRON dpr11
X	7630279	X_7630279_SNP [dm3] X_7736246_SNP [dm6]	T	C	8.881e^-5	0.935	SYNONYMOUS_CODING Rab39 UPSTREAM Tom40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16371035	2R_16371035_SNP [dm3] 2R_20483530_SNP [dm6]	G	T	9.037e^-5	0.935	INTERGENIC
3R	2469667	3R_2469667_SNP [dm3] 3R_6643945_SNP [dm6]	A	G	9.374e^-5	0.935	SYNONYMOUS_CODING CG1315 DOWNSTREAM CG31286	TF binding site mE1_TFBS_HSA
2R	14742481	2R_14742481_SNP [dm3] 2R_18854976_SNP [dm6]	T	C	9.506e^-5	0.935	SYNONYMOUS_CODING Jheh1 DOWNSTREAM Jheh2	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_sens
2R	19708910	2R_19708910_SNP [dm3] 2R_23821387_SNP [dm6]	A	G	9.617e^-5	0.935	INTRON CG5549	TF binding site mE1_TFBS_chinmo
2R	13040486	2R_13040486_SNP [dm3] 2R_17152981_SNP [dm6]	A	C	9.743e^-5	0.935	INTERGENIC
3R	976312	3R_976312_SNP [dm3] 3R_5150590_SNP [dm6]	A	C	9.770e^-5	0.935	UPSTREAM dpr16 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1686209	3L_1686209_SNP [dm3] 3L_1686209_SNP [dm6]	A	C	9.899e^-5	0.935	INTRON CG7991
3R	17014459	3R_17014459_SNP [dm3] 3R_21188737_SNP [dm6]	C	T	9.962e^-5	0.935	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11365750	3L_11365750_SNP [dm3] 3L_11372650_SNP [dm6]	T	C	1.022e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	11582093	3L_11582093_SNP [dm3] 3L_11588993_SNP [dm6]	T	G	1.023e^-4	0.935	UPSTREAM CG7377 INTERGENIC
2L	10251288	2L_10251288_SNP [dm3] 2L_10251288_SNP [dm6]	T	C	1.038e^-4	0.935	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	6741949	2R_6741949_INS [dm3] 2R_10854444_INS [dm6]	A	ACATTATGCTTAAA...	1.057e^-4	0.935	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3L	13843556	3L_13843556_SNP [dm3] 3L_13850456_SNP [dm6]	C	T	1.064e^-4	0.935	SYNONYMOUS_CODING Hml
3L	13843703	3L_13843703_SNP [dm3] 3L_13850603_SNP [dm6]	C	T	1.064e^-4	0.935	SYNONYMOUS_CODING Hml
3L	13844946	3L_13844946_SNP [dm3] 3L_13851846_SNP [dm6]	G	C	1.064e^-4	0.935	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3R	960831	3R_960831_SNP [dm3] 3R_5135109_SNP [dm6]	C	G	1.077e^-4	0.935	INTERGENIC
3R	960832	3R_960832_SNP [dm3] 3R_5135110_SNP [dm6]	G	C	1.077e^-4	0.935	INTERGENIC
X	7067765	X_7067765_SNP [dm3] X_7173732_SNP [dm6]	A	C	1.085e^-4	0.935	INTRON CG9650 & 1 other EXON CR44357
3L	2554557	3L_2554557_SNP [dm3] 3L_2554557_SNP [dm6]	G	A	1.089e^-4	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3L	2554562	3L_2554562_SNP [dm3] 3L_2554562_SNP [dm6]	T	C	1.089e^-4	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3L	2554661	3L_2554661_SNP [dm3] 3L_2554661_SNP [dm6]	C	G	1.089e^-4	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
X	3762399	X_3762399_SNP [dm3] X_3868366_SNP [dm6]	T	G	1.093e^-4	0.935	UPSTREAM CG2930 & 1 other INTRON yin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11477052	3R_11477052_SNP [dm3] 3R_15651330_SNP [dm6]	T	A	1.102e^-4	0.935	INTERGENIC
X	21911056	X_21911056_SNP [dm3] X_22509220_SNP [dm6]	A	G	1.106e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2974874	3L_2974874_SNP [dm3] 3L_2974874_SNP [dm6]	T	C	1.107e^-4	0.935	DOWNSTREAM CR44530 INTERGENIC
3L	13882319	3L_13882319_SNP [dm3] 3L_13889219_SNP [dm6]	A	G	1.117e^-4	0.935	INTRON dysc
3L	13882320	3L_13882320_SNP [dm3] 3L_13889220_SNP [dm6]	T	C	1.117e^-4	0.935	INTRON dysc
X	11671740	X_11671740_SNP [dm3] X_11777707_SNP [dm6]	A	G	1.125e^-4	0.935	INTRON dy
3R	11477138	3R_11477138_SNP [dm3] 3R_15651416_SNP [dm6]	T	C	1.130e^-4	0.935	INTERGENIC
3L	14002440	3L_14002440_SNP [dm3] 3L_14009340_SNP [dm6]	T	C	1.130e^-4	0.935	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	3295798	X_3295798_SNP [dm3] X_3401765_SNP [dm6]	A	G	1.145e^-4	0.935	INTRON CR44999 & 1 other
3R	2465762	3R_2465762_DEL [dm3] 3R_6640040_DEL [dm6]	TTATT	A	1.147e^-4	0.935	INTERGENIC
X	3765095	X_3765095_SNP [dm3] X_3871062_SNP [dm6]	A	T	1.153e^-4	0.935	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3L	13841534	3L_13841534_SNP [dm3] 3L_13848434_SNP [dm6]	A	T	1.178e^-4	0.935	SYNONYMOUS_CODING Hml
2R	6739425	2R_6739425_SNP [dm3] 2R_10851920_SNP [dm6]	G	T	1.187e^-4	0.935	INTRON CG30015
2L	7780777	2L_7780777_SNP [dm3] 2L_7780777_SNP [dm6]	C	T	1.208e^-4	0.935	SYNONYMOUS_CODING Uro UPSTREAM CG7164
2L	19246858	2L_19246858_DEL [dm3] 2L_19246858_DEL [dm6]	GG	G	1.216e^-4	0.935	INTERGENIC
2L	19246871	2L_19246871_SNP [dm3] 2L_19246871_SNP [dm6]	T	C	1.216e^-4	0.935	INTERGENIC
3R	26467717	3R_26467717_SNP [dm3] 3R_30641995_SNP [dm6]	G	C	1.229e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14951531	2L_14951531_SNP [dm3] 2L_14951531_SNP [dm6]	C	T	1.243e^-4	0.935	INTRON CG42313
X	12677099	X_12677099_SNP [dm3] X_12783066_SNP [dm6]	G	A	1.245e^-4	0.935	INTRON CG32647
3L	8232558	3L_8232558_SNP [dm3] 3L_8239458_SNP [dm6]	T	C	1.256e^-4	0.935	INTRON Dscam4 & 1 other	TF binding site mE1_TFBS_chinmo
2R	6739887	2R_6739887_SNP [dm3] 2R_10852382_SNP [dm6]	G	A	1.262e^-4	0.935	INTRON CG30015
3L	14310944	3L_14310944_SNP [dm3] 3L_14317844_SNP [dm6]	T	A	1.297e^-4	0.935	INTRON fz
3L	4242128	3L_4242128_SNP [dm3] 3L_4242128_SNP [dm6]	G	T	1.308e^-4	0.935	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16618177	2R_16618177_DEL [dm3] 2R_20730672_DEL [dm6]	GCTTG	AT	1.321e^-4	0.935	UPSTREAM CG13442 INTRON dpr
2R	6740923	2R_6740923_SNP [dm3] 2R_10853418_SNP [dm6]	A	T	1.339e^-4	0.935	UTR_5_PRIME CG30015 UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6740924	2R_6740924_SNP [dm3] 2R_10853419_SNP [dm6]	A	T	1.339e^-4	0.935	UTR_5_PRIME CG30015 UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13134131	3L_13134131_SNP [dm3] 3L_13141031_SNP [dm6]	T	C	1.355e^-4	0.935	INTERGENIC
2R	12023230	2R_12023230_INS [dm3] 2R_16135725_INS [dm6]	C	CTCGC	1.360e^-4	0.935	INTRON spin	TF binding site mE1_TFBS_hkb
3L	18603674	3L_18603674_SNP [dm3] 3L_18610574_SNP [dm6]	T	G	1.374e^-4	0.935	NON_SYNONYMOUS_CODING CG32201 INTRON CG4174 & 1 other
2L	19246915	2L_19246915_SNP [dm3] 2L_19246915_SNP [dm6]	G	T	1.397e^-4	0.935	INTERGENIC
2L	19246918	2L_19246918_SNP [dm3] 2L_19246918_SNP [dm6]	A	T	1.397e^-4	0.935	INTERGENIC
3R	893614	3R_893614_SNP [dm3] 3R_5067892_SNP [dm6]	C	T	1.412e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14002133	3L_14002133_SNP [dm3] 3L_14009033_SNP [dm6]	T	G	1.418e^-4	0.935	NON_SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13870787	3L_13870787_SNP [dm3] 3L_13877687_SNP [dm6]	C	T	1.440e^-4	0.935	INTRON dysc
2R	12023512	2R_12023512_SNP [dm3] 2R_16136007_SNP [dm6]	C	G	1.441e^-4	0.935	INTRON spin
3L	2554647	3L_2554647_SNP [dm3] 3L_2554647_SNP [dm6]	A	C	1.442e^-4	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	3668597	3R_3668597_SNP [dm3] 3R_7842875_SNP [dm6]	C	T	1.447e^-4	0.935	INTRON CG34384
3R	3668601	3R_3668601_SNP [dm3] 3R_7842879_SNP [dm6]	A	C	1.447e^-4	0.935	INTRON CG34384
2L	12153242	2L_12153242_SNP [dm3] 2L_12153242_SNP [dm6]	G	C	1.448e^-4	0.935	INTRON CG31760
2L	11485417	2L_11485417_SNP [dm3] 2L_11485417_SNP [dm6]	C	T	1.449e^-4	0.935	NON_SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2554567	3L_2554567_SNP [dm3] 3L_2554567_SNP [dm6]	C	A	1.452e^-4	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3R	2433577	3R_2433577_SNP [dm3] 3R_6607855_SNP [dm6]	T	A	1.458e^-4	0.935	DOWNSTREAM glob2 INTRON glob2
3R	2433645	3R_2433645_SNP [dm3] 3R_6607923_SNP [dm6]	T	A	1.458e^-4	0.935	UTR_3_PRIME glob2 INTRON glob2
3L	22765270	3L_22765270_SNP [dm3] 3L_22772170_SNP [dm6]	T	A	1.478e^-4	0.935	INTRON SPoCk
3R	818381	3R_818381_SNP [dm3] 3R_4992659_SNP [dm6]	C	A	1.482e^-4	0.935	INTRON CG2022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13882315	3L_13882315_SNP [dm3] 3L_13889215_SNP [dm6]	C	T	1.506e^-4	0.935	INTRON dysc
3L	13882346	3L_13882346_SNP [dm3] 3L_13889246_SNP [dm6]	G	A	1.506e^-4	0.935	INTRON dysc
3L	13882418	3L_13882418_SNP [dm3] 3L_13889318_SNP [dm6]	C	T	1.506e^-4	0.935	INTRON dysc
3L	13882485	3L_13882485_SNP [dm3] 3L_13889385_SNP [dm6]	A	T	1.506e^-4	0.935	INTRON dysc
3L	13882515	3L_13882515_SNP [dm3] 3L_13889415_SNP [dm6]	C	T	1.506e^-4	0.935	INTRON dysc
3L	13883085	3L_13883085_DEL [dm3] 3L_13889985_DEL [dm6]	GTGTT	G	1.506e^-4	0.935	INTRON dysc
2R	6739918	2R_6739918_SNP [dm3] 2R_10852413_SNP [dm6]	T	G	1.520e^-4	0.935	INTRON CG30015
2L	1990843	2L_1990843_SNP [dm3] 2L_1990843_SNP [dm6]	A	G	1.523e^-4	0.935	DOWNSTREAM Obp22a EXON CR42874
3L	9611213	3L_9611213_SNP [dm3] 3L_9618113_SNP [dm6]	A	T	1.548e^-4	0.935	INTRON LanB2	TF binding site mE1_TFBS_cad
X	14551316	X_14551316_SNP [dm3] X_14657283_SNP [dm6]	G	A	1.558e^-4	0.935	INTERGENIC
X	4068127	X_4068127_SNP [dm3] X_4174094_SNP [dm6]	T	C	1.560e^-4	0.935	INTRON Fas2
X	4068131	X_4068131_SNP [dm3] X_4174098_SNP [dm6]	G	C	1.560e^-4	0.935	INTRON Fas2
3R	2486350	3R_2486350_DEL [dm3] 3R_6660628_DEL [dm6]	TT	T	1.562e^-4	0.935	UPSTREAM agt DOWNSTREAM lab INTERGENIC
3L	11365439	3L_11365439_SNP [dm3] 3L_11372339_SNP [dm6]	A	T	1.571e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_cnc
X	3762416	X_3762416_SNP [dm3] X_3868383_SNP [dm6]	C	T	1.586e^-4	0.935	UPSTREAM CG2930 & 1 other INTRON yin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14979825	3L_14979825_SNP [dm3] 3L_14986725_SNP [dm6]	A	G	1.590e^-4	0.935	UPSTREAM mnd INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	12573914	3R_12573914_SNP [dm3] 3R_16748192_SNP [dm6]	T	A	1.595e^-4	0.935	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	1900205	3L_1900205_SNP [dm3] 3L_1900205_SNP [dm6]	A	G	1.600e^-4	0.935	DOWNSTREAM CG1887 INTRON CG1887
2L	15134777	2L_15134777_INS [dm3] 2L_15134777_INS [dm6]	C	CACG	1.607e^-4	0.935	INTERGENIC
2L	15134790	2L_15134790_SNP [dm3] 2L_15134790_SNP [dm6]	C	G	1.607e^-4	0.935	INTERGENIC
2L	15134801	2L_15134801_SNP [dm3] 2L_15134801_SNP [dm6]	A	G	1.607e^-4	0.935	INTERGENIC
3R	4239120	3R_4239120_SNP [dm3] 3R_8413398_SNP [dm6]	T	C	1.619e^-4	0.935	INTRON CG45263
2L	6835289	2L_6835289_SNP [dm3] 2L_6835289_SNP [dm6]	T	A	1.630e^-4	0.935	INTRON sens-2
3L	18151703	3L_18151703_SNP [dm3] 3L_18158603_SNP [dm6]	A	G	1.632e^-4	0.935	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1900528	3L_1900528_SNP [dm3] 3L_1900528_SNP [dm6]	A	G	1.638e^-4	0.935	UTR_3_PRIME CG1887 INTRON CG1887
3R	2435982	3R_2435982_SNP [dm3] 3R_6610260_SNP [dm6]	T	C	1.640e^-4	0.935	INTERGENIC
2L	9201346	2L_9201346_SNP [dm3] 2L_9201346_SNP [dm6]	G	T	1.652e^-4	0.935	INTRON tai
2R	13044434	2R_13044434_SNP [dm3] 2R_17156929_SNP [dm6]	A	T	1.668e^-4	0.935	UTR_3_PRIME CG17290 & 1 other
3R	980090	3R_980090_SNP [dm3] 3R_5154368_SNP [dm6]	G	A	1.673e^-4	0.935	INTRON dpr16
3L	8413602	3L_8413602_DEL [dm3] 3L_8420502_DEL [dm6]	ATGT	A	1.674e^-4	0.935	INTRON CG32354
3R	12672993	3R_12672993_INS [dm3] 3R_16847271_INS [dm6]	A	AAAAGCAGCA	1.674e^-4	0.935	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	15248211	2L_15248211_SNP [dm3] 2L_15248211_SNP [dm6]	C	T	1.680e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248233	2L_15248233_SNP [dm3] 2L_15248233_SNP [dm6]	G	C	1.680e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
3L	13842361	3L_13842361_SNP [dm3] 3L_13849261_SNP [dm6]	T	G	1.684e^-4	0.935	SYNONYMOUS_CODING Hml
3L	13843688	3L_13843688_SNP [dm3] 3L_13850588_SNP [dm6]	T	G	1.684e^-4	0.935	SYNONYMOUS_CODING Hml
3R	11302238	3R_11302238_SNP [dm3] 3R_15476516_SNP [dm6]	C	A	1.684e^-4	0.935	UPSTREAM AdamTS-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	1028527	2R_1028527_SNP [dm3] 2R_5141022_SNP [dm6]	T	C	1.707e^-4	0.935	INTERGENIC
2R	5294293	2R_5294293_SNP [dm3] 2R_9406788_SNP [dm6]	C	A	1.710e^-4	0.935	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11365311	3L_11365311_SNP [dm3] 3L_11372211_SNP [dm6]	T	C	1.711e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	19224314	2L_19224314_SNP [dm3] 2L_19224314_SNP [dm6]	G	A	1.712e^-4	0.935	INTERGENIC
3L	8232584	3L_8232584_INS [dm3] 3L_8239484_INS [dm6]	G	AGTTT	1.712e^-4	0.935	INTRON Dscam4 & 1 other	TF binding site mE1_TFBS_chinmo
2R	6741702	2R_6741702_DEL [dm3] 2R_10854197_DEL [dm6]	GAGCGGCTAACAGCGCTG...	G	1.719e^-4	0.935	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
X	4101523	X_4101523_SNP [dm3] X_4207490_SNP [dm6]	C	T	1.727e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15248161	2L_15248161_SNP [dm3] 2L_15248161_SNP [dm6]	T	A	1.732e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248164	2L_15248164_SNP [dm3] 2L_15248164_SNP [dm6]	G	C	1.732e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248172	2L_15248172_SNP [dm3] 2L_15248172_SNP [dm6]	T	A	1.732e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	15248180	2L_15248180_INS [dm3] 2L_15248180_INS [dm6]	G	GT	1.732e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
3R	810582	3R_810582_SNP [dm3] 3R_4984860_SNP [dm6]	G	T	1.746e^-4	0.935	UPSTREAM CG14662 DOWNSTREAM CR43478 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	899233	3R_899233_SNP [dm3] 3R_5073511_SNP [dm6]	T	C	1.750e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8322253	2L_8322253_SNP [dm3] 2L_8322253_SNP [dm6]	A	T	1.751e^-4	0.935	DOWNSTREAM CG7787 INTRON CG7781	TF binding site mE1_TFBS_cad
2L	8326780	2L_8326780_DEL [dm3] 2L_8326780_DEL [dm6]	TAAA	T	1.774e^-4	0.935	UPSTREAM CG14275 INTERGENIC
2R	6740549	2R_6740549_SNP [dm3] 2R_10853044_SNP [dm6]	A	G	1.778e^-4	0.935	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	6643230	2R_6643230_SNP [dm3] 2R_10755725_SNP [dm6]	T	A	1.790e^-4	0.935	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6642513	2R_6642513_SNP [dm3] 2R_10755008_SNP [dm6]	G	C	1.799e^-4	0.935	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_chinmo
3L	10512923	3L_10512923_DEL [dm3] 3L_10519823_DEL [dm6]	TT	G	1.810e^-4	0.935	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4637268	3L_4637268_SNP [dm3] 3L_4637268_SNP [dm6]	T	C	1.812e^-4	0.935	UTR_3_PRIME axo INTRON axo
3L	18087169	3L_18087169_SNP [dm3] 3L_18094069_SNP [dm6]	A	G	1.821e^-4	0.935	INTRON CG13698
3L	18603658	3L_18603658_SNP [dm3] 3L_18610558_SNP [dm6]	C	T	1.845e^-4	0.935	NON_SYNONYMOUS_CODING CG32201 INTRON CG4174 & 1 other
3L	14766456	3L_14766456_SNP [dm3] 3L_14773356_SNP [dm6]	G	A	1.858e^-4	0.935	NON_SYNONYMOUS_CODING mop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2009592	3L_2009592_SNP [dm3] 3L_2009592_SNP [dm6]	A	G	1.859e^-4	0.935	DOWNSTREAM CR44535 EXON CR44535
2R	4711850	2R_4711850_SNP [dm3] 2R_8824345_SNP [dm6]	A	G	1.861e^-4	0.935	INTRON sns
3L	11957569	3L_11957569_SNP [dm3] 3L_11964469_SNP [dm6]	A	T	1.868e^-4	0.935	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3L	13839631	3L_13839631_SNP [dm3] 3L_13846531_SNP [dm6]	G	A	1.869e^-4	0.935	INTRON Hml
3L	22885109	3L_22885109_SNP [dm3] 3L_22892009_SNP [dm6]	A	G	1.904e^-4	0.935	NON_SYNONYMOUS_CODING slif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1900180	3L_1900180_SNP [dm3] 3L_1900180_SNP [dm6]	C	T	1.917e^-4	0.935	DOWNSTREAM CG1887 INTRON CG1887
3L	1900185	3L_1900185_SNP [dm3] 3L_1900185_SNP [dm6]	C	T	1.917e^-4	0.935	DOWNSTREAM CG1887 INTRON CG1887
3R	3668613	3R_3668613_INS [dm3] 3R_7842891_INS [dm6]	A	AA	1.949e^-4	0.935	INTRON CG34384
2R	15544689	2R_15544689_SNP [dm3] 2R_19657184_SNP [dm6]	T	G	1.950e^-4	0.935	UPSTREAM CG15125 EXON CR44214
3L	8232556	3L_8232556_SNP [dm3] 3L_8239456_SNP [dm6]	A	G	1.951e^-4	0.935	INTRON Dscam4 & 1 other	TF binding site mE1_TFBS_chinmo
3L	8232564	3L_8232564_SNP [dm3] 3L_8239464_SNP [dm6]	G	T	1.951e^-4	0.935	INTRON Dscam4 & 1 other	TF binding site mE1_TFBS_chinmo
3L	8232599	3L_8232599_SNP [dm3] 3L_8239499_SNP [dm6]	T	A	1.951e^-4	0.935	INTRON Dscam4 & 1 other	TF binding site mE1_TFBS_chinmo
2L	10251261	2L_10251261_SNP [dm3] 2L_10251261_SNP [dm6]	G	C	1.960e^-4	0.935	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1726703	2L_1726703_SNP [dm3] 2L_1726703_SNP [dm6]	C	T	1.965e^-4	0.935	INTRON Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9532222	2L_9532222_DEL [dm3] 2L_9532222_DEL [dm6]	TACAAATGGAAGCCT...	T	1.970e^-4	0.935	INTRON Oatp30B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15248273	2L_15248273_DEL [dm3] 2L_15248273_DEL [dm6]	GCAG	G	1.978e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
2L	6502377	2L_6502377_SNP [dm3] 2L_6502377_SNP [dm6]	T	A	1.994e^-4	0.935	INTRON CG31637
3L	8222578	3L_8222578_SNP [dm3] 3L_8229478_SNP [dm6]	A	G	2.018e^-4	0.935	INTRON eIF4E-3
2R	9442372	2R_9442372_SNP [dm3] 2R_13554867_SNP [dm6]	A	G	2.020e^-4	0.935	INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	879913	3R_879913_SNP [dm3] 3R_5054191_SNP [dm6]	T	C	2.037e^-4	0.935	UPSTREAM CR45588 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11979685	3R_11979685_SNP [dm3] 3R_16153963_SNP [dm6]	C	A	2.050e^-4	0.935	INTERGENIC
2L	15134775	2L_15134775_INS [dm3] 2L_15134775_INS [dm6]	T	TATG	2.051e^-4	0.935	INTERGENIC
3L	8665171	3L_8665171_SNP [dm3] 3L_8672071_SNP [dm6]	A	G	2.052e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11234911	3L_11234911_SNP [dm3] 3L_11241811_SNP [dm6]	C	A	2.058e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	14078905	X_14078905_SNP [dm3] X_14184872_SNP [dm6]	T	C	2.062e^-4	0.935	SYNONYMOUS_CODING CG32603	TF binding site mE1_TFBS_chinmo
3L	1900192	3L_1900192_SNP [dm3] 3L_1900192_SNP [dm6]	T	A	2.065e^-4	0.935	DOWNSTREAM CG1887 INTRON CG1887
2R	16726980	2R_16726980_SNP [dm3] 2R_20839475_SNP [dm6]	T	C	2.070e^-4	0.935	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17509417	2L_17509417_SNP [dm3] 2L_17509417_SNP [dm6]	G	T	2.074e^-4	0.935	SYNONYMOUS_CODING Dhc36C
3L	9865373	3L_9865373_SNP [dm3] 3L_9872273_SNP [dm6]	C	T	2.138e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	746516	3L_746516_SNP [dm3] 3L_746516_SNP [dm6]	G	A	2.157e^-4	0.935	INTRON hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	746528	3L_746528_SNP [dm3] 3L_746528_SNP [dm6]	T	C	2.157e^-4	0.935	INTRON hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14882145	3L_14882145_SNP [dm3] 3L_14889045_SNP [dm6]	C	T	2.177e^-4	0.935	INTERGENIC
2R	4160955	2R_4160955_SNP [dm3] 2R_8273450_SNP [dm6]	A	G	2.180e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	15248135	2L_15248135_SNP [dm3] 2L_15248135_SNP [dm6]	A	T	2.180e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
3R	908340	3R_908340_SNP [dm3] 3R_5082618_SNP [dm6]	A	G	2.187e^-4	0.935	UTR_3_PRIME corto DOWNSTREAM corto	TF binding site mE1_TFBS_sens
X	15491107	X_15491107_SNP [dm3] X_15597074_SNP [dm6]	C	T	2.210e^-4	0.935	INTERGENIC
2R	3915715	2R_3915715_SNP [dm3] 2R_8028210_SNP [dm6]	T	C	2.217e^-4	0.935	DOWNSTREAM CR43724 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14955731	3L_14955731_SNP [dm3] 3L_14962631_SNP [dm6]	A	C	2.219e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6835192	2L_6835192_SNP [dm3] 2L_6835192_SNP [dm6]	T	A	2.221e^-4	0.935	INTRON sens-2
3L	1900179	3L_1900179_SNP [dm3] 3L_1900179_SNP [dm6]	A	C	2.236e^-4	0.935	DOWNSTREAM CG1887 INTRON CG1887
3L	1900232	3L_1900232_SNP [dm3] 3L_1900232_SNP [dm6]	C	T	2.236e^-4	0.935	DOWNSTREAM CG1887 INTRON CG1887
2L	14068528	2L_14068528_SNP [dm3] 2L_14068528_SNP [dm6]	T	C	2.237e^-4	0.935	INTRON nAChRalpha5
3L	8135163	3L_8135163_SNP [dm3] 3L_8142063_SNP [dm6]	C	T	2.239e^-4	0.935	UTR_3_PRIME CG13676 DOWNSTREAM mus301
3R	812933	3R_812933_SNP [dm3] 3R_4987211_SNP [dm6]	C	A	2.243e^-4	0.935	INTRON CG2022	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	13380968	2R_13380968_SNP [dm3] 2R_17493463_SNP [dm6]	T	C	2.245e^-4	0.935	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
X	6506480	X_6506480_SNP [dm3] X_6612447_SNP [dm6]	A	T	2.245e^-4	0.935	INTRON pigs	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	2305299	X_2305299_SNP [dm3] X_2411266_SNP [dm6]	G	C	2.267e^-4	0.935	UPSTREAM CG12496 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3171349	X_3171349_SNP [dm3] X_3277316_SNP [dm6]	T	C	2.268e^-4	0.935	INTRON dnc
2L	15248088	2L_15248088_SNP [dm3] 2L_15248088_SNP [dm6]	T	A	2.282e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
2R	6741790	2R_6741790_SNP [dm3] 2R_10854285_SNP [dm6]	C	T	2.287e^-4	0.935	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3L	13883096	3L_13883096_SNP [dm3] 3L_13889996_SNP [dm6]	C	A	2.305e^-4	0.935	INTRON dysc
3L	13844973	3L_13844973_SNP [dm3] 3L_13851873_SNP [dm6]	T	C	2.306e^-4	0.935	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
2L	15248188	2L_15248188_SNP [dm3] 2L_15248188_SNP [dm6]	A	T	2.306e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
2R	8549388	2R_8549388_SNP [dm3] 2R_12661883_SNP [dm6]	C	T	2.324e^-4	0.935	UPSTREAM nemy INTRON nemy
3R	2488927	3R_2488927_SNP [dm3] 3R_6663205_SNP [dm6]	A	T	2.339e^-4	0.935	UTR_5_PRIME lab INTRON lab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	2645610	3R_2645610_SNP [dm3] 3R_6819888_SNP [dm6]	C	T	2.347e^-4	0.935	UPSTREAM tRNA:K5:84ABd & 1 other DOWNSTREAM 7SLRNA:CR42652 INTERGENIC	regulatory region REDfly_CRMs
3L	19044761	3L_19044761_SNP [dm3] 3L_19051661_SNP [dm6]	C	A	2.356e^-4	0.935	NON_SYNONYMOUS_CODING Acp76A UPSTREAM CR44675	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14081434	X_14081434_SNP [dm3] X_14187401_SNP [dm6]	G	T	2.370e^-4	0.935	NON_SYNONYMOUS_CODING CG12481
3L	1900558	3L_1900558_SNP [dm3] 3L_1900558_SNP [dm6]	G	C	2.375e^-4	0.935	UTR_3_PRIME CG1887 INTRON CG1887
2L	15615502	2L_15615502_SNP [dm3] 2L_15615502_SNP [dm6]	A	G	2.381e^-4	0.935	UTR_3_PRIME CG15253 UPSTREAM CG15254
2R	6741907	2R_6741907_SNP [dm3] 2R_10854402_SNP [dm6]	G	C	2.392e^-4	0.935	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3L	18546323	3L_18546323_SNP [dm3] 3L_18553223_SNP [dm6]	T	C	2.394e^-4	0.935	INTERGENIC
2L	16338822	2L_16338822_SNP [dm3] 2L_16338822_SNP [dm6]	G	C	2.395e^-4	0.935	NON_SYNONYMOUS_CODING CG42266 UPSTREAM CG31817
3L	5869808	3L_5869808_SNP [dm3] 3L_5876708_SNP [dm6]	A	G	2.399e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7780286	2L_7780286_SNP [dm3] 2L_7780286_SNP [dm6]	G	A	2.400e^-4	0.935	NON_SYNONYMOUS_CODING Uro
3L	14986332	3L_14986332_SNP [dm3] 3L_14993232_SNP [dm6]	C	A	2.407e^-4	0.935	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	15134779	2L_15134779_SNP [dm3] 2L_15134779_SNP [dm6]	A	T	2.414e^-4	0.935	INTERGENIC
2R	15923397	2R_15923397_SNP [dm3] 2R_20035892_SNP [dm6]	A	G	2.417e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15923447	2R_15923447_SNP [dm3] 2R_20035942_SNP [dm6]	T	C	2.417e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15923456	2R_15923456_SNP [dm3] 2R_20035951_SNP [dm6]	A	T	2.417e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15923516	2R_15923516_SNP [dm3] 2R_20036011_SNP [dm6]	G	A	2.417e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15923524	2R_15923524_SNP [dm3] 2R_20036019_SNP [dm6]	A	C	2.417e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22747303	3R_22747303_INS [dm3] 3R_26921581_INS [dm6]	A	AG	2.433e^-4	0.935	INTRON sda
2R	6741762	2R_6741762_SNP [dm3] 2R_10854257_SNP [dm6]	G	A	2.442e^-4	0.935	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
2L	1990844	2L_1990844_SNP [dm3] 2L_1990844_SNP [dm6]	A	T	2.445e^-4	0.935	DOWNSTREAM Obp22a EXON CR42874
2L	15018631	2L_15018631_SNP [dm3] 2L_15018631_SNP [dm6]	A	T	2.459e^-4	0.935	INTRON GABA-B-R1
2R	1069123	2R_1069123_SNP [dm3] 2R_5181618_SNP [dm6]	T	A	2.478e^-4	0.935	SYNONYMOUS_CODING Nipped-A
2R	1069156	2R_1069156_SNP [dm3] 2R_5181651_SNP [dm6]	T	C	2.478e^-4	0.935	SYNONYMOUS_CODING Nipped-A
2R	1037767	2R_1037767_SNP [dm3] 2R_5150262_SNP [dm6]	T	C	2.503e^-4	0.935	INTRON Atf6
3L	13839617	3L_13839617_SNP [dm3] 3L_13846517_SNP [dm6]	C	A	2.520e^-4	0.935	INTRON Hml
2R	6323450	2R_6323450_SNP [dm3] 2R_10435945_SNP [dm6]	A	C	2.543e^-4	0.935	UTR_3_PRIME RanBPM DOWNSTREAM CG12895
3L	18151701	3L_18151701_SNP [dm3] 3L_18158601_SNP [dm6]	T	G	2.543e^-4	0.935	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2554608	3L_2554608_SNP [dm3] 3L_2554608_SNP [dm6]	T	A	2.544e^-4	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3R	8480032	3R_8480032_SNP [dm3] 3R_12654310_SNP [dm6]	G	A	2.570e^-4	0.935	UPSTREAM CG6225 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11608228	2R_11608228_SNP [dm3] 2R_15720723_SNP [dm6]	G	T	2.571e^-4	0.935	INTERGENIC
3L	14880198	3L_14880198_SNP [dm3] 3L_14887098_SNP [dm6]	C	T	2.585e^-4	0.935	DOWNSTREAM CR44702 INTERGENIC
2L	3926865	2L_3926865_SNP [dm3] 2L_3926865_SNP [dm6]	T	G	2.588e^-4	0.935	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	15248202	2L_15248202_SNP [dm3] 2L_15248202_SNP [dm6]	A	T	2.592e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
X	14720226	X_14720226_SNP [dm3] X_14826193_SNP [dm6]	C	G	2.604e^-4	0.935	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18971309	2R_18971309_SNP [dm3] 2R_23083786_SNP [dm6]	C	T	2.604e^-4	0.935	DOWNSTREAM Gr59b INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
3L	13853232	3L_13853232_SNP [dm3] 3L_13860132_SNP [dm6]	C	A	2.614e^-4	0.935	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
3R	12575128	3R_12575128_SNP [dm3] 3R_16749406_SNP [dm6]	C	G	2.620e^-4	0.935	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	22760723	3L_22760723_SNP [dm3] 3L_22767623_SNP [dm6]	G	C	2.631e^-4	0.935	INTRON SPoCk
2R	12012555	2R_12012555_SNP [dm3] 2R_16125050_SNP [dm6]	A	T	2.633e^-4	0.935	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13889822	3L_13889822_SNP [dm3] 3L_13896722_SNP [dm6]	T	C	2.634e^-4	0.935	INTRON dysc
3R	2434943	3R_2434943_SNP [dm3] 3R_6609221_SNP [dm6]	G	A	2.664e^-4	0.935	UPSTREAM glob2 INTERGENIC
2L	14501259	2L_14501259_SNP [dm3] 2L_14501259_SNP [dm6]	T	A	2.671e^-4	0.935	INTERGENIC
X	3764992	X_3764992_SNP [dm3] X_3870959_SNP [dm6]	A	C	2.671e^-4	0.935	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3L	13835662	3L_13835662_SNP [dm3] 3L_13842562_SNP [dm6]	T	C	2.673e^-4	0.935	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750
3L	13836564	3L_13836564_SNP [dm3] 3L_13843464_SNP [dm6]	G	C	2.673e^-4	0.935	UPSTREAM Tsp68C & 1 other INTERGENIC
2L	15134853	2L_15134853_DEL [dm3] 2L_15134853_DEL [dm6]	TCTGAACCAA	T	2.674e^-4	0.935	INTERGENIC
2L	15134865	2L_15134865_INS [dm3] 2L_15134865_INS [dm6]	A	ATTCGTA	2.674e^-4	0.935	INTERGENIC
3L	11195656	3L_11195656_SNP [dm3] 3L_11202556_SNP [dm6]	G	C	2.699e^-4	0.935	DOWNSTREAM CG14141 INTRON Plod
X	3759675	X_3759675_SNP [dm3] X_3865642_SNP [dm6]	G	C	2.720e^-4	0.935	INTRON yin
2L	15134986	2L_15134986_DEL [dm3] 2L_15134986_DEL [dm6]	GGTTGATGA	CATTAC	2.737e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_sens
3L	10674618	3L_10674618_SNP [dm3] 3L_10681518_SNP [dm6]	T	C	2.761e^-4	0.935	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3R	23523173	3R_23523173_SNP [dm3] 3R_27697451_SNP [dm6]	G	A	2.764e^-4	0.935	SYNONYMOUS_CODING ALiX DOWNSTREAM CG43320	TF binding site mE1_TFBS_chinmo
3R	23523230	3R_23523230_SNP [dm3] 3R_27697508_SNP [dm6]	G	A	2.764e^-4	0.935	SYNONYMOUS_CODING ALiX	TF binding site mE1_TFBS_chinmo
3L	13829043	3L_13829043_SNP [dm3] 3L_13835943_SNP [dm6]	C	T	2.765e^-4	0.935	INTERGENIC
3R	812999	3R_812999_SNP [dm3] 3R_4987277_SNP [dm6]	G	A	2.766e^-4	0.935	INTRON CG2022	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	19267232	2L_19267232_SNP [dm3] 2L_19267232_SNP [dm6]	C	T	2.777e^-4	0.935	INTERGENIC
2L	16707974	2L_16707974_SNP [dm3] 2L_16707974_SNP [dm6]	C	T	2.777e^-4	0.935	INTRON CG31808
X	2306198	X_2306198_SNP [dm3] X_2412165_SNP [dm6]	T	C	2.781e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2R	1628376	2R_1628376_SNP [dm3] 2R_5740871_SNP [dm6]	G	T	2.784e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
X	3759805	X_3759805_SNP [dm3] X_3865772_SNP [dm6]	A	G	2.794e^-4	0.935	INTRON yin
3R	23532230	3R_23532230_SNP [dm3] 3R_27706508_SNP [dm6]	G	A	2.796e^-4	0.935	UPSTREAM CG12877 & 1 other INTRON CG12428	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	17166785	X_17166785_SNP [dm3] X_17272752_SNP [dm6]	G	C	2.806e^-4	0.935	INTRON f	TF binding site mE1_TFBS_cad
2R	13380942	2R_13380942_INS [dm3] 2R_17493437_INS [dm6]	AA	CGC	2.840e^-4	0.935	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	11327793	3R_11327793_SNP [dm3] 3R_15502071_SNP [dm6]	C	A	2.851e^-4	0.935	INTERGENIC
2L	12745638	2L_12745638_SNP [dm3] 2L_12745638_SNP [dm6]	A	G	2.866e^-4	0.935	DOWNSTREAM MRP INTERGENIC	TF binding site mE1_TFBS_inv
3L	1517606	3L_1517606_SNP [dm3] 3L_1517606_SNP [dm6]	C	G	2.867e^-4	0.935	UTR_5_PRIME Psa UPSTREAM Psa & 1 other INTRON Psa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	14077556	X_14077556_SNP [dm3] X_14183523_SNP [dm6]	T	A	2.883e^-4	0.935	DOWNSTREAM CG11584 INTERGENIC
X	14077793	X_14077793_SNP [dm3] X_14183760_SNP [dm6]	A	G	2.883e^-4	0.935	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
X	14078100	X_14078100_SNP [dm3] X_14184067_SNP [dm6]	G	C	2.883e^-4	0.935	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
X	14081486	X_14081486_SNP [dm3] X_14187453_SNP [dm6]	A	C	2.883e^-4	0.935	SYNONYMOUS_CODING CG12481
X	14081569	X_14081569_SNP [dm3] X_14187536_SNP [dm6]	G	C	2.883e^-4	0.935	NON_SYNONYMOUS_CODING CG12481
X	14081678	X_14081678_SNP [dm3] X_14187645_SNP [dm6]	A	C	2.883e^-4	0.935	UTR_3_PRIME CG12481
X	14081686	X_14081686_SNP [dm3] X_14187653_SNP [dm6]	C	T	2.883e^-4	0.935	UTR_3_PRIME CG12481
X	3765455	X_3765455_SNP [dm3] X_3871422_SNP [dm6]	A	T	2.891e^-4	0.935	UPSTREAM CG2930 INTRON yin & 1 other	TF binding site mE1_TFBS_cnc
2R	8407423	2R_8407423_SNP [dm3] 2R_12519918_SNP [dm6]	A	G	2.897e^-4	0.935	SYNONYMOUS_CODING CG8569	TF binding site mE1_TFBS_cad
2R	8407432	2R_8407432_SNP [dm3] 2R_12519927_SNP [dm6]	G	A	2.897e^-4	0.935	SYNONYMOUS_CODING CG8569	TF binding site mE1_TFBS_cad
2L	11642762	2L_11642762_SNP [dm3] 2L_11642762_SNP [dm6]	T	C	2.901e^-4	0.935	INTERGENIC
3R	2503130	3R_2503130_SNP [dm3] 3R_6677408_SNP [dm6]	C	T	2.912e^-4	0.935	SYNONYMOUS_CODING lab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	16258842	2L_16258842_SNP [dm3] 2L_16258842_SNP [dm6]	G	A	2.916e^-4	0.935	SYNONYMOUS_CODING EndoGI DOWNSTREAM twe	TF binding site mE1_TFBS_sens
3L	13835565	3L_13835565_SNP [dm3] 3L_13842465_SNP [dm6]	G	C	2.924e^-4	0.935	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750
3L	13853228	3L_13853228_SNP [dm3] 3L_13860128_SNP [dm6]	C	T	2.924e^-4	0.935	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
2R	6741939	2R_6741939_SNP [dm3] 2R_10854434_SNP [dm6]	A	T	2.932e^-4	0.935	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3R	2467109	3R_2467109_SNP [dm3] 3R_6641387_SNP [dm6]	T	A	2.937e^-4	0.935	DOWNSTREAM CG1315 INTRON CG31286
2R	17568019	2R_17568019_SNP [dm3] 2R_21680514_SNP [dm6]	A	G	2.950e^-4	0.935	SPLICE_SITE_REGION CG30263 SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17568024	2R_17568024_SNP [dm3] 2R_21680519_SNP [dm6]	G	A	2.950e^-4	0.935	SPLICE_SITE_REGION CG30263 INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18151706	3L_18151706_SNP [dm3] 3L_18158606_SNP [dm6]	G	T	2.953e^-4	0.935	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16670241	2L_16670241_SNP [dm3] 2L_16670241_SNP [dm6]	C	A	2.962e^-4	0.935	INTRON Trpgamma	TF binding site mE1_TFBS_Kr
2R	4749821	2R_4749821_SNP [dm3] 2R_8862316_SNP [dm6]	T	C	2.978e^-4	0.935	UPSTREAM RyR INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3171248	X_3171248_SNP [dm3] X_3277215_SNP [dm6]	G	A	2.980e^-4	0.935	INTRON dnc
2R	13797555	2R_13797555_SNP [dm3] 2R_17910050_SNP [dm6]	A	G	2.981e^-4	0.935	INTRON Elk
3L	11195249	3L_11195249_SNP [dm3] 3L_11202149_SNP [dm6]	G	C	2.987e^-4	0.935	UTR_3_PRIME CG14141 INTRON Plod
3R	26810770	3R_26810770_SNP [dm3] 3R_30985048_SNP [dm6]	C	A	2.991e^-4	0.935	INTRON 5-HT7
3L	8232601	3L_8232601_SNP [dm3] 3L_8239501_SNP [dm6]	A	G	2.993e^-4	0.935	INTRON Dscam4 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13676603	2L_13676603_SNP [dm3] 2L_13676603_SNP [dm6]	G	T	2.998e^-4	0.935	DOWNSTREAM CG31814 INTERGENIC
3R	23532357	3R_23532357_SNP [dm3] 3R_27706635_SNP [dm6]	C	A	2.998e^-4	0.935	UTR_5_PRIME CG12428 UPSTREAM CG12877 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	22751686	3L_22751686_SNP [dm3] 3L_22758586_SNP [dm6]	A	G	3.015e^-4	0.935	INTRON SPoCk
3L	22752911	3L_22752911_INS [dm3] 3L_22759811_INS [dm6]	G	GTCTCTGTCT	3.015e^-4	0.935	UPSTREAM SPoCk INTRON SPoCk
3L	22762933	3L_22762933_INS [dm3] 3L_22769833_INS [dm6]	T	TC	3.015e^-4	0.935	INTRON SPoCk	TF binding site mE1_TFBS_inv
3L	22772605	3L_22772605_SNP [dm3] 3L_22779505_SNP [dm6]	A	G	3.015e^-4	0.935	INTRON SPoCk
3L	22772766	3L_22772766_SNP [dm3] 3L_22779666_SNP [dm6]	T	G	3.015e^-4	0.935	INTRON SPoCk
3R	8459749	3R_8459749_SNP [dm3] 3R_12634027_SNP [dm6]	C	A	3.021e^-4	0.935	SYNONYMOUS_CODING CG18530 UPSTREAM CG11598
3L	4759671	3L_4759671_SNP [dm3] 3L_4759671_SNP [dm6]	C	A	3.028e^-4	0.935	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4759708	3L_4759708_SNP [dm3] 3L_4759708_SNP [dm6]	G	A	3.028e^-4	0.935	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4759743	3L_4759743_SNP [dm3] 3L_4759743_SNP [dm6]	C	T	3.028e^-4	0.935	INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6676408	3L_6676408_SNP [dm3] 3L_6683308_SNP [dm6]	C	T	3.036e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8612949	X_8612949_SNP [dm3] X_8718916_SNP [dm6]	G	T	3.040e^-4	0.935	SYNONYMOUS_CODING l_1_G0020	TF binding site mE1_TFBS_sens
3L	14335802	3L_14335802_SNP [dm3] 3L_14342702_SNP [dm6]	C	A	3.047e^-4	0.935	INTRON fz
3R	2384136	3R_2384136_SNP [dm3] 3R_6558414_SNP [dm6]	A	C	3.105e^-4	0.935	DOWNSTREAM CG1137 INTRON dpr11
2L	8326767	2L_8326767_SNP [dm3] 2L_8326767_SNP [dm6]	A	G	3.109e^-4	0.935	UPSTREAM CG14275 INTERGENIC
X	20401691	X_20401691_DEL [dm3] X_20530664_DEL [dm6]	TGCCCCATGCCCCGTGCT...	T	3.112e^-4	0.935	INTERGENIC
3R	2645017	3R_2645017_SNP [dm3] 3R_6819295_SNP [dm6]	A	G	3.117e^-4	0.935	UPSTREAM tRNA:K5:84ABd DOWNSTREAM 7SLRNA:CR42652 EXON tRNA:CR31485:Psi	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	4191734	2R_4191734_DEL [dm3] 2R_8304229_DEL [dm6]	TCA	C	3.117e^-4	0.935	UPSTREAM CR44447 INTERGENIC
3L	9865253	3L_9865253_DEL [dm3] 3L_9872153_DEL [dm6]	TTATTG	T	3.120e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	12677003	X_12677003_SNP [dm3] X_12782970_SNP [dm6]	T	G	3.124e^-4	0.935	INTRON CG32647
2L	15147751	2L_15147751_SNP [dm3] 2L_15147751_SNP [dm6]	A	G	3.136e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18462621	X_18462621_SNP [dm3] X_18568588_SNP [dm6]	T	A	3.155e^-4	0.935	INTRON Bx	TF binding site mE1_TFBS_chinmo
3L	15352962	3L_15352962_SNP [dm3] 3L_15359862_SNP [dm6]	G	A	3.159e^-4	0.935	INTERGENIC
3L	8101452	3L_8101452_SNP [dm3] 3L_8108352_SNP [dm6]	G	A	3.174e^-4	0.935	UTR_3_PRIME Ect4 UPSTREAM fan INTRON Ect4
3R	5838478	3R_5838478_SNP [dm3] 3R_10012756_SNP [dm6]	C	A	3.176e^-4	0.935	NON_SYNONYMOUS_CODING Mical INTRON Mical
3R	2465138	3R_2465138_SNP [dm3] 3R_6639416_SNP [dm6]	G	A	3.181e^-4	0.935	INTERGENIC
2R	17421831	2R_17421831_DEL [dm3] 2R_21534326_DEL [dm6]	ATTACATTTGA...	T	3.203e^-4	0.935	INTRON Egfr	TF binding site BDTNP1_TFBS_prd
X	14077834	X_14077834_SNP [dm3] X_14183801_SNP [dm6]	G	A	3.204e^-4	0.935	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
2R	18000918	2R_18000918_DEL [dm3] 2R_22113413_DEL [dm6]	GT	G	3.208e^-4	0.935	UPSTREAM CG30280 & 1 other INTRON Vrp1
2R	2681383	2R_2681383_SNP [dm3] 2R_6793878_SNP [dm6]	T	C	3.209e^-4	0.935	INTRON Epac
2R	10792237	2R_10792237_SNP [dm3] 2R_14904732_SNP [dm6]	C	T	3.221e^-4	0.935	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10212896	3L_10212896_SNP [dm3] 3L_10219796_SNP [dm6]	T	A	3.232e^-4	0.935	NON_SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
3L	15353795	3L_15353795_SNP [dm3] 3L_15360695_SNP [dm6]	C	T	3.235e^-4	0.935	INTERGENIC
3L	8413593	3L_8413593_SNP [dm3] 3L_8420493_SNP [dm6]	C	A	3.239e^-4	0.935	INTRON CG32354
2R	13573631	2R_13573631_SNP [dm3] 2R_17686126_SNP [dm6]	A	G	3.241e^-4	0.935	NON_SYNONYMOUS_CODING CG42562 UPSTREAM HPS4 DOWNSTREAM CG42561 INTRON HPS4
2L	3926659	2L_3926659_SNP [dm3] 2L_3926659_SNP [dm6]	C	T	3.242e^-4	0.935	INTRON fred	TF binding site mE1_TFBS_bab1
3R	20308411	3R_20308411_SNP [dm3] 3R_24482689_SNP [dm6]	A	T	3.246e^-4	0.935	INTERGENIC
3L	12397102	3L_12397102_SNP [dm3] 3L_12404002_SNP [dm6]	G	A	3.253e^-4	0.935	UTR_3_PRIME CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4242325	3L_4242325_SNP [dm3] 3L_4242325_SNP [dm6]	G	A	3.253e^-4	0.935	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4242340	3L_4242340_SNP [dm3] 3L_4242340_SNP [dm6]	C	T	3.253e^-4	0.935	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	13835541	3L_13835541_SNP [dm3] 3L_13842441_SNP [dm6]	G	C	3.255e^-4	0.935	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750	TF binding site mE1_TFBS_cad
3R	950104	3R_950104_SNP [dm3] 3R_5124382_SNP [dm6]	T	A	3.278e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	7484500	X_7484500_SNP [dm3] X_7590467_SNP [dm6]	G	C	3.281e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs
2L	8368668	2L_8368668_SNP [dm3] 2L_8368668_SNP [dm6]	T	C	3.301e^-4	0.935	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
3L	19840018	3L_19840018_DEL [dm3] 3L_19846918_DEL [dm6]	ACAAT	A	3.304e^-4	0.935	UPSTREAM Papss INTRON Papss
2R	9867385	2R_9867385_SNP [dm3] 2R_13979880_SNP [dm6]	A	G	3.317e^-4	0.935	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6743273	2R_6743273_SNP [dm3] 2R_10855768_SNP [dm6]	A	G	3.321e^-4	0.935	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	7192249	2L_7192249_SNP [dm3] 2L_7192249_SNP [dm6]	C	T	3.324e^-4	0.935	INTRON CG4497	TF binding site mE1_TFBS_inv
2R	6192379	2R_6192379_SNP [dm3] 2R_10304874_SNP [dm6]	G	A	3.336e^-4	0.935	SYNONYMOUS_CODING CAP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11486035	2L_11486035_SNP [dm3] 2L_11486035_SNP [dm6]	G	C	3.340e^-4	0.935	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16868560	2R_16868560_SNP [dm3] 2R_20981055_SNP [dm6]	A	C	3.370e^-4	0.935	INTRON CG9313	TF binding site mE1_TFBS_cad
3L	18998179	3L_18998179_SNP [dm3] 3L_19005079_SNP [dm6]	G	A	3.387e^-4	0.935	SYNONYMOUS_CODING nkd UTR_3_PRIME nkd	TF binding site mE1_TFBS_chinmo
3R	10866419	3R_10866419_SNP [dm3] 3R_15040697_SNP [dm6]	C	T	3.402e^-4	0.935	DOWNSTREAM CR44944 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2431490	3R_2431490_SNP [dm3] 3R_6605768_SNP [dm6]	G	T	3.413e^-4	0.935	DOWNSTREAM glob2 INTERGENIC
2L	408062	2L_408062_SNP [dm3] 2L_408062_SNP [dm6]	G	T	3.417e^-4	0.935	UTR_3_PRIME AP-2alpha DOWNSTREAM AP-2alpha & 1 other
3L	9865281	3L_9865281_SNP [dm3] 3L_9872181_SNP [dm6]	A	T	3.435e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	1480733	3L_1480733_SNP [dm3] 3L_1480733_SNP [dm6]	T	G	3.446e^-4	0.935	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	22769890	3L_22769890_SNP [dm3] 3L_22776790_SNP [dm6]	A	G	3.446e^-4	0.935	INTRON SPoCk
3L	3055901	3L_3055901_SNP [dm3] 3L_3055901_SNP [dm6]	G	T	3.452e^-4	0.935	DOWNSTREAM CG1271 & 2 others INTERGENIC
3L	13829027	3L_13829027_SNP [dm3] 3L_13835927_SNP [dm6]	G	T	3.458e^-4	0.935	INTERGENIC
3L	13829032	3L_13829032_SNP [dm3] 3L_13835932_SNP [dm6]	C	G	3.458e^-4	0.935	INTERGENIC
3L	13829037	3L_13829037_SNP [dm3] 3L_13835937_SNP [dm6]	T	G	3.458e^-4	0.935	INTERGENIC
3R	2465686	3R_2465686_DEL [dm3] 3R_6639964_DEL [dm6]	CATCAGGAATCGATAGAGAA...	T	3.458e^-4	0.935	INTERGENIC
3R	2465785	3R_2465785_SNP [dm3] 3R_6640063_SNP [dm6]	G	T	3.458e^-4	0.935	INTERGENIC
3L	1612936	3L_1612936_SNP [dm3] 3L_1612936_SNP [dm6]	C	T	3.463e^-4	0.935	SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other
3L	5141390	3L_5141390_SNP [dm3] 3L_5148290_SNP [dm6]	C	G	3.472e^-4	0.935	NON_SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo
X	3541828	X_3541828_SNP [dm3] X_3647795_SNP [dm6]	G	A	3.483e^-4	0.935	INTRON AstA-R1
3R	9959049	3R_9959049_SNP [dm3] 3R_14133327_SNP [dm6]	A	T	3.485e^-4	0.935	INTERGENIC
3L	3056072	3L_3056072_SNP [dm3] 3L_3056072_SNP [dm6]	C	T	3.497e^-4	0.935	UTR_3_PRIME CG32486 DOWNSTREAM CG16753	TF binding site mE1_TFBS_inv
2R	11606489	2R_11606489_DEL [dm3] 2R_15718984_DEL [dm6]	GAG	A	3.502e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3926184	2L_3926184_SNP [dm3] 2L_3926184_SNP [dm6]	G	C	3.505e^-4	0.935	INTRON fred
X	8633311	X_8633311_SNP [dm3] X_8739278_SNP [dm6]	A	G	3.509e^-4	0.935	INTERGENIC
3L	21597118	3L_21597118_SNP [dm3] 3L_21604018_SNP [dm6]	T	A	3.510e^-4	0.935	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16834920	3L_16834920_SNP [dm3] 3L_16841820_SNP [dm6]	T	A	3.523e^-4	0.935	UPSTREAM TSG101 INTERGENIC
2L	19949577	2L_19949577_SNP [dm3] 2L_19949577_SNP [dm6]	T	C	3.524e^-4	0.935	INTRON sick	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	5106039	2R_5106039_SNP [dm3] 2R_9218534_SNP [dm6]	G	A	3.527e^-4	0.935	INTERGENIC
3L	11195296	3L_11195296_SNP [dm3] 3L_11202196_SNP [dm6]	G	A	3.531e^-4	0.935	DOWNSTREAM CG14141 INTRON Plod
3R	21339069	3R_21339069_SNP [dm3] 3R_25513347_SNP [dm6]	A	G	3.533e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13836110	3L_13836110_SNP [dm3] 3L_13843010_SNP [dm6]	G	T	3.535e^-4	0.935	UTR_5_PRIME CG8750 UPSTREAM CG8757 & 1 other
3L	15896610	3L_15896610_SNP [dm3] 3L_15903510_SNP [dm6]	T	C	3.540e^-4	0.935	INTRON sff
2L	20435096	2L_20435096_SNP [dm3] 2L_20435096_SNP [dm6]	C	T	3.544e^-4	0.935	INTRON CG31688
X	13862724	X_13862724_SNP [dm3] X_13968691_SNP [dm6]	G	A	3.562e^-4	0.935	INTRON mamo
2L	10510327	2L_10510327_SNP [dm3] 2L_10510327_SNP [dm6]	T	C	3.567e^-4	0.935	UTR_5_PRIME CG7384 DOWNSTREAM Fatp & 1 other	TF binding site mE1_TFBS_cad
3L	13776209	3L_13776209_SNP [dm3] 3L_13783109_SNP [dm6]	C	G	3.577e^-4	0.935	INTRON bru-3
3L	13836166	3L_13836166_SNP [dm3] 3L_13843066_SNP [dm6]	A	G	3.577e^-4	0.935	UPSTREAM CG8757 & 2 others INTERGENIC
3L	13836188	3L_13836188_SNP [dm3] 3L_13843088_SNP [dm6]	G	C	3.577e^-4	0.935	UPSTREAM CG8757 & 2 others INTERGENIC
3L	13839568	3L_13839568_SNP [dm3] 3L_13846468_SNP [dm6]	C	G	3.577e^-4	0.935	INTRON Hml
3L	13354501	3L_13354501_SNP [dm3] 3L_13361401_SNP [dm6]	A	G	3.581e^-4	0.935	INTERGENIC
3R	2449169	3R_2449169_SNP [dm3] 3R_6623447_SNP [dm6]	G	A	3.589e^-4	0.935	INTERGENIC
3R	2436136	3R_2436136_SNP [dm3] 3R_6610414_SNP [dm6]	C	G	3.594e^-4	0.935	INTERGENIC
2R	3019215	2R_3019215_SNP [dm3] 2R_7131710_SNP [dm6]	G	A	3.613e^-4	0.935	NON_SYNONYMOUS_CODING Cyp9b2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9254482	2L_9254482_SNP [dm3] 2L_9254482_SNP [dm6]	T	C	3.617e^-4	0.935	NON_SYNONYMOUS_CODING lectin-30A
3L	22706140	3L_22706140_SNP [dm3] 3L_22713040_SNP [dm6]	C	T	3.631e^-4	0.935	NON_SYNONYMOUS_CODING CG11370	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9313008	3L_9313008_SNP [dm3] 3L_9319908_SNP [dm6]	G	A	3.633e^-4	0.935	INTERGENIC
2R	18971365	2R_18971365_SNP [dm3] 2R_23083842_SNP [dm6]	T	A	3.636e^-4	0.935	DOWNSTREAM Gr59b INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	11751158	3R_11751158_SNP [dm3] 3R_15925436_SNP [dm6]	G	C	3.650e^-4	0.935	UPSTREAM CG34276 INTRON CG4221
3R	11751177	3R_11751177_SNP [dm3] 3R_15925455_SNP [dm6]	A	T	3.650e^-4	0.935	UPSTREAM CG34276 INTRON CG4221
2R	12809928	2R_12809928_SNP [dm3] 2R_16922423_SNP [dm6]	C	A	3.652e^-4	0.935	INTERGENIC
3L	15357208	3L_15357208_SNP [dm3] 3L_15364108_SNP [dm6]	C	T	3.663e^-4	0.935	INTERGENIC
X	14077858	X_14077858_SNP [dm3] X_14183825_SNP [dm6]	A	G	3.666e^-4	0.935	UPSTREAM CG32603 DOWNSTREAM CG11584 INTERGENIC
X	14081424	X_14081424_SNP [dm3] X_14187391_SNP [dm6]	G	T	3.667e^-4	0.935	NON_SYNONYMOUS_CODING CG12481
2R	10188146	2R_10188146_SNP [dm3] 2R_14300641_SNP [dm6]	C	T	3.695e^-4	0.935	SYNONYMOUS_CODING tej DOWNSTREAM Ih
3R	27450791	3R_27450791_SNP [dm3] 3R_31625069_SNP [dm6]	G	T	3.698e^-4	0.935	INTRON kek6
3L	8593243	3L_8593243_SNP [dm3] 3L_8600143_SNP [dm6]	T	C	3.709e^-4	0.935	SYNONYMOUS_CODING Nelf-E UPSTREAM RpL14 DOWNSTREAM CG43078
3L	1465854	3L_1465854_SNP [dm3] 3L_1465854_SNP [dm6]	A	T	3.710e^-4	0.935	INTRON Ptp61F & 1 other
3L	1466378	3L_1466378_SNP [dm3] 3L_1466378_SNP [dm6]	C	T	3.710e^-4	0.935	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_cad
2L	7873097	2L_7873097_DEL [dm3] 2L_7873097_DEL [dm6]	ACCACCTGACA...	A	3.725e^-4	0.935	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
3L	11195979	3L_11195979_SNP [dm3] 3L_11202879_SNP [dm6]	G	A	3.743e^-4	0.935	SPLICE_SITE_REGION Plod DOWNSTREAM CG14141 INTRON Plod
2R	10774709	2R_10774709_DEL [dm3] 2R_14887204_DEL [dm6]	TCTACCCT	T	3.754e^-4	0.935	UTR_3_PRIME Cyp6a8 UPSTREAM Cyp6a21
3R	2481655	3R_2481655_SNP [dm3] 3R_6655933_SNP [dm6]	T	C	3.757e^-4	0.935	UTR_3_PRIME Taf1 DOWNSTREAM CG1307
X	8909782	X_8909782_SNP [dm3] X_9015749_SNP [dm6]	C	T	3.762e^-4	0.935	INTRON CR43836 & 1 other
X	18882531	X_18882531_SNP [dm3] X_18988498_SNP [dm6]	T	A	3.773e^-4	0.935	INTRON CG43759
3R	20308677	3R_20308677_SNP [dm3] 3R_24482955_SNP [dm6]	G	A	3.776e^-4	0.935	INTERGENIC
2L	9813816	2L_9813816_SNP [dm3] 2L_9813816_SNP [dm6]	T	A	3.784e^-4	0.935	INTRON nAChRalpha6
2R	14051934	2R_14051934_SNP [dm3] 2R_18164429_SNP [dm6]	T	G	3.807e^-4	0.935	UTR_3_PRIME CG10915 DOWNSTREAM Nup75 & 1 other
2L	1726613	2L_1726613_SNP [dm3] 2L_1726613_SNP [dm6]	T	C	3.821e^-4	0.935	SYNONYMOUS_CODING Eno	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2445435	3R_2445435_SNP [dm3] 3R_6619713_SNP [dm6]	C	T	3.828e^-4	0.935	INTERGENIC
X	4068190	X_4068190_SNP [dm3] X_4174157_SNP [dm6]	A	C	3.834e^-4	0.935	INTRON Fas2
3R	20454723	3R_20454723_SNP [dm3] 3R_24629001_SNP [dm6]	C	T	3.848e^-4	0.935	SYNONYMOUS_CODING Wsck INTRON atl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6742802	2R_6742802_INS [dm3] 2R_10855297_INS [dm6]	G	GGG	3.886e^-4	0.935	DOWNSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	10037686	3L_10037686_SNP [dm3] 3L_10044586_SNP [dm6]	T	C	3.905e^-4	0.935	INTRON dpr6
X	14551292	X_14551292_SNP [dm3] X_14657259_SNP [dm6]	T	A	3.907e^-4	0.935	INTERGENIC
2L	15134807	2L_15134807_SNP [dm3] 2L_15134807_SNP [dm6]	G	A	3.915e^-4	0.935	INTERGENIC
3R	2520654	3R_2520654_SNP [dm3] 3R_6694932_SNP [dm6]	C	A	3.924e^-4	0.935	DOWNSTREAM Ccp84Ac INTERGENIC
2L	1989537	2L_1989537_SNP [dm3] 2L_1989537_SNP [dm6]	C	T	3.924e^-4	0.935	DOWNSTREAM Npc2a EXON CR42874
3L	9477010	3L_9477010_SNP [dm3] 3L_9483910_SNP [dm6]	T	G	3.933e^-4	0.935	SYNONYMOUS_CODING Jarid2
3L	14317874	3L_14317874_SNP [dm3] 3L_14324774_SNP [dm6]	G	T	3.938e^-4	0.935	INTRON fz & 1 other
2L	8048158	2L_8048158_SNP [dm3] 2L_8048158_SNP [dm6]	C	T	3.956e^-4	0.935	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
X	3171101	X_3171101_SNP [dm3] X_3277068_SNP [dm6]	T	G	3.957e^-4	0.935	INTRON dnc
3L	2009329	3L_2009329_SNP [dm3] 3L_2009329_SNP [dm6]	A	C	3.962e^-4	0.935	DOWNSTREAM CR44535 EXON CR44535
2L	9973180	2L_9973180_INS [dm3] 2L_9973180_INS [dm6]	T	TCGGGGCACTA...	3.994e^-4	0.935	INTERGENIC
3R	846066	3R_846066_SNP [dm3] 3R_5020344_SNP [dm6]	C	G	4.000e^-4	0.935	INTRON CR45585	TF binding site BDTNP1_TFBS_dl
2R	3955020	2R_3955020_SNP [dm3] 2R_8067515_SNP [dm6]	C	T	4.003e^-4	0.935	UTR_5_PRIME CG17977 UPSTREAM lig	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3956137	2R_3956137_SNP [dm3] 2R_8068632_SNP [dm6]	C	G	4.003e^-4	0.935	UPSTREAM CG17977 & 1 other INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	3956194	2R_3956194_SNP [dm3] 2R_8068689_SNP [dm6]	T	C	4.003e^-4	0.935	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	3958119	2R_3958119_SNP [dm3] 2R_8070614_SNP [dm6]	A	T	4.003e^-4	0.935	INTRON lig
2L	1457329	2L_1457329_SNP [dm3] 2L_1457329_SNP [dm6]	A	G	4.004e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7484437	X_7484437_SNP [dm3] X_7590404_SNP [dm6]	A	G	4.007e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs
3R	846601	3R_846601_SNP [dm3] 3R_5020879_SNP [dm6]	G	A	4.012e^-4	0.935	INTRON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13380977	2R_13380977_SNP [dm3] 2R_17493472_SNP [dm6]	C	T	4.015e^-4	0.935	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	4157526	2R_4157526_SNP [dm3] 2R_8270021_SNP [dm6]	T	C	4.021e^-4	0.935	UPSTREAM CG30371 INTERGENIC
2L	13106862	2L_13106862_SNP [dm3] 2L_13106862_SNP [dm6]	C	T	4.024e^-4	0.935	UTR_5_PRIME CG5142 UPSTREAM CG5142
X	17659443	X_17659443_SNP [dm3] X_17765410_SNP [dm6]	T	C	4.026e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3502105	3R_3502105_INS [dm3] 3R_7676383_INS [dm6]	G	CTGA	4.083e^-4	0.935	INTRON Nlg1
3L	21889825	3L_21889825_SNP [dm3] 3L_21896725_SNP [dm6]	C	A	4.085e^-4	0.935	INTRON mub
2L	14877947	2L_14877947_SNP [dm3] 2L_14877947_SNP [dm6]	C	T	4.087e^-4	0.935	DOWNSTREAM CR45727 INTERGENIC
2L	15134639	2L_15134639_SNP [dm3] 2L_15134639_SNP [dm6]	G	T	4.097e^-4	0.935	INTERGENIC
X	16479392	X_16479392_DEL [dm3] X_16585359_DEL [dm6]	AGGAATAA	A	4.108e^-4	0.935	INTRON CanA-14F
X	15330803	X_15330803_SNP [dm3] X_15436770_SNP [dm6]	C	T	4.133e^-4	0.935	INTRON Cngl
2L	6212688	2L_6212688_SNP [dm3] 2L_6212688_SNP [dm6]	A	G	4.136e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11940630	2L_11940630_SNP [dm3] 2L_11940630_SNP [dm6]	C	T	4.139e^-4	0.935	INTERGENIC
2L	11940635	2L_11940635_SNP [dm3] 2L_11940635_SNP [dm6]	A	G	4.139e^-4	0.935	INTERGENIC
X	3542015	X_3542015_SNP [dm3] X_3647982_SNP [dm6]	T	A	4.142e^-4	0.935	INTRON AstA-R1
3L	13839083	3L_13839083_SNP [dm3] 3L_13845983_SNP [dm6]	G	A	4.161e^-4	0.935	UPSTREAM Hml DOWNSTREAM Tsp68C INTERGENIC	TF binding site mE1_TFBS_bab1
2L	16552621	2L_16552621_SNP [dm3] 2L_16552621_SNP [dm6]	G	T	4.174e^-4	0.935	INTRON CG42389
3R	17243478	3R_17243478_SNP [dm3] 3R_21417756_SNP [dm6]	C	A	4.176e^-4	0.935	INTRON lbl	TF binding site mE1_TFBS_cad
3R	17243483	3R_17243483_SNP [dm3] 3R_21417761_SNP [dm6]	A	T	4.176e^-4	0.935	INTRON lbl	TF binding site mE1_TFBS_cad
2R	14742814	2R_14742814_SNP [dm3] 2R_18855309_SNP [dm6]	A	T	4.178e^-4	0.935	UPSTREAM Jheh1 DOWNSTREAM Jheh2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	16305416	2L_16305416_SNP [dm3] 2L_16305416_SNP [dm6]	A	G	4.180e^-4	0.935	SYNONYMOUS_CODING c_2_M DOWNSTREAM CG5861
2L	1195429	2L_1195429_SNP [dm3] 2L_1195429_SNP [dm6]	T	A	4.202e^-4	0.935	INTRON CG5001
3L	7655654	3L_7655654_SNP [dm3] 3L_7662554_SNP [dm6]	C	G	4.202e^-4	0.935	NON_SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3858347	2R_3858347_SNP [dm3] 2R_7970842_SNP [dm6]	C	A	4.210e^-4	0.935	SYNONYMOUS_CODING CG8726
2R	13573630	2R_13573630_SNP [dm3] 2R_17686125_SNP [dm6]	A	C	4.211e^-4	0.935	SYNONYMOUS_CODING CG42562 UPSTREAM HPS4 DOWNSTREAM CG42561 INTRON HPS4
2L	15012788	2L_15012788_SNP [dm3] 2L_15012788_SNP [dm6]	T	C	4.228e^-4	0.935	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	7483640	X_7483640_DEL [dm3] X_7589607_DEL [dm6]	GGGTTGAG	G	4.236e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs
3L	16849309	3L_16849309_INS [dm3] 3L_16856209_INS [dm6]	A	AA	4.243e^-4	0.935	INTRON Rh4 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3945770	3L_3945770_SNP [dm3] 3L_3945770_SNP [dm6]	T	C	4.268e^-4	0.935	SYNONYMOUS_CODING CG14982	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14001726	3L_14001726_SNP [dm3] 3L_14008626_SNP [dm6]	T	C	4.287e^-4	0.935	SYNONYMOUS_CODING upSET	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	10384237	2L_10384237_SNP [dm3] 2L_10384237_SNP [dm6]	A	T	4.296e^-4	0.935	NON_SYNONYMOUS_CODING CG5096 DOWNSTREAM cdc2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15248160	2L_15248160_SNP [dm3] 2L_15248160_SNP [dm6]	T	C	4.310e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
X	4068420	X_4068420_SNP [dm3] X_4174387_SNP [dm6]	A	G	4.316e^-4	0.935	INTRON Fas2
3L	11236537	3L_11236537_SNP [dm3] 3L_11243437_SNP [dm6]	C	A	4.319e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4970262	3L_4970262_SNP [dm3] 3L_4970262_SNP [dm6]	T	C	4.335e^-4	0.935	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4797697	3L_4797697_SNP [dm3] 3L_4797697_SNP [dm6]	T	G	4.346e^-4	0.935	INTERGENIC
2R	4748497	2R_4748497_SNP [dm3] 2R_8860992_SNP [dm6]	G	T	4.355e^-4	0.935	INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	11684329	3R_11684329_SNP [dm3] 3R_15858607_SNP [dm6]	G	T	4.363e^-4	0.935	SYNONYMOUS_CODING CG31183	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22067152	2L_22067152_SNP [dm3] 2L_22067152_SNP [dm6]	C	G	4.377e^-4	0.935	EXON CR31700
2L	11485934	2L_11485934_SNP [dm3] 2L_11485934_SNP [dm6]	C	T	4.383e^-4	0.935	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485937	2L_11485937_SNP [dm3] 2L_11485937_SNP [dm6]	T	C	4.383e^-4	0.935	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11578470	2L_11578470_SNP [dm3] 2L_11578470_SNP [dm6]	A	G	4.396e^-4	0.935	INTERGENIC
3L	8620840	3L_8620840_SNP [dm3] 3L_8627740_SNP [dm6]	T	C	4.404e^-4	0.935	INTRON Zasp66	TF binding site mE1_TFBS_bab1
2L	10320668	2L_10320668_SNP [dm3] 2L_10320668_SNP [dm6]	A	C	4.412e^-4	0.935	INTRON CG5381
2L	17487284	2L_17487284_SNP [dm3] 2L_17487284_SNP [dm6]	G	A	4.419e^-4	0.935	SYNONYMOUS_CODING qua DOWNSTREAM CG43645 & 1 other	TF binding site mE1_TFBS_cad
3L	4242130	3L_4242130_SNP [dm3] 3L_4242130_SNP [dm6]	T	A	4.420e^-4	0.935	UPSTREAM pav INTRON CG14997	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4242326	3L_4242326_SNP [dm3] 3L_4242326_SNP [dm6]	A	C	4.420e^-4	0.935	SYNONYMOUS_CODING CG14997 UPSTREAM pav	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	19224317	2L_19224317_SNP [dm3] 2L_19224317_SNP [dm6]	C	G	4.446e^-4	0.935	INTERGENIC
3R	865424	3R_865424_SNP [dm3] 3R_5039702_SNP [dm6]	T	C	4.446e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17644249	2R_17644249_SNP [dm3] 2R_21756744_SNP [dm6]	C	T	4.457e^-4	0.935	UPSTREAM Grx-1 INTERGENIC
X	3759270	X_3759270_SNP [dm3] X_3865237_SNP [dm6]	A	C	4.460e^-4	0.935	SYNONYMOUS_CODING yin	TF binding site mE1_TFBS_HSA
3L	16838536	3L_16838536_SNP [dm3] 3L_16845436_SNP [dm6]	A	G	4.486e^-4	0.935	START_GAINED CG9715 UTR_5_PRIME CG9715 UPSTREAM CG9669 & 1 other DOWNSTREAM TSG101	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2435983	3R_2435983_SNP [dm3] 3R_6610261_SNP [dm6]	A	C	4.501e^-4	0.935	INTERGENIC
3R	24762360	3R_24762360_SNP [dm3] 3R_28936638_SNP [dm6]	T	C	4.505e^-4	0.935	INTRON CG14521
2L	1989536	2L_1989536_SNP [dm3] 2L_1989536_SNP [dm6]	T	G	4.522e^-4	0.935	DOWNSTREAM Npc2a EXON CR42874
3L	13457797	3L_13457797_SNP [dm3] 3L_13464697_SNP [dm6]	T	A	4.528e^-4	0.935	SYNONYMOUS_CODING CG10738 DOWNSTREAM CG10089	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3955161	2R_3955161_SNP [dm3] 2R_8067656_SNP [dm6]	T	C	4.548e^-4	0.935	UPSTREAM lig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	14979353	3L_14979353_SNP [dm3] 3L_14986253_SNP [dm6]	G	A	4.581e^-4	0.935	INTRON mnd	TF binding site mE1_TFBS_cad
2L	8449783	2L_8449783_SNP [dm3] 2L_8449783_SNP [dm6]	G	A	4.586e^-4	0.935	UTR_3_PRIME fu12 UPSTREAM U26
3L	11581442	3L_11581442_SNP [dm3] 3L_11588342_SNP [dm6]	C	A	4.587e^-4	0.935	UPSTREAM rt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1727198	2L_1727198_SNP [dm3] 2L_1727198_SNP [dm6]	A	T	4.601e^-4	0.935	UTR_5_PRIME Eno INTRON Eno	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14321272	X_14321272_SNP [dm3] X_14427239_SNP [dm6]	T	C	4.602e^-4	0.935	INTRON dpr8
X	3542516	X_3542516_SNP [dm3] X_3648483_SNP [dm6]	T	C	4.636e^-4	0.935	INTRON AstA-R1
3L	11926717	3L_11926717_SNP [dm3] 3L_11933617_SNP [dm6]	G	A	4.641e^-4	0.935	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site mE1_TFBS_HSA
X	18462620	X_18462620_SNP [dm3] X_18568587_SNP [dm6]	A	G	4.645e^-4	0.935	INTRON Bx	TF binding site mE1_TFBS_chinmo
3L	15699848	3L_15699848_SNP [dm3] 3L_15706748_SNP [dm6]	C	T	4.647e^-4	0.935	INTERGENIC
2L	10974151	2L_10974151_SNP [dm3] 2L_10974151_SNP [dm6]	G	C	4.678e^-4	0.935	SYNONYMOUS_CODING abo DOWNSTREAM CG16743	TF binding site mE1_TFBS_HSA
2L	1457531	2L_1457531_SNP [dm3] 2L_1457531_SNP [dm6]	A	T	4.682e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1047107	2R_1047107_SNP [dm3] 2R_5159602_SNP [dm6]	A	G	4.704e^-4	0.935	INTERGENIC	transposable element FlyBase
2R	7831430	2R_7831430_SNP [dm3] 2R_11943925_SNP [dm6]	T	C	4.705e^-4	0.935	INTRON CG13188
3R	974974	3R_974974_SNP [dm3] 3R_5149252_SNP [dm6]	A	G	4.712e^-4	0.935	INTERGENIC
3L	13947080	3L_13947080_SNP [dm3] 3L_13953980_SNP [dm6]	G	A	4.720e^-4	0.935	INTRON CG32137
3L	1176174	3L_1176174_SNP [dm3] 3L_1176174_SNP [dm6]	G	T	4.738e^-4	0.935	INTRON bab2
2L	16305434	2L_16305434_SNP [dm3] 2L_16305434_SNP [dm6]	G	A	4.743e^-4	0.935	SYNONYMOUS_CODING c_2_M DOWNSTREAM CG5861
2R	2981246	2R_2981246_SNP [dm3] 2R_7093741_SNP [dm6]	T	G	4.743e^-4	0.935	INTRON esn
3L	11049713	3L_11049713_SNP [dm3] 3L_11056613_SNP [dm6]	T	C	4.769e^-4	0.935	UPSTREAM CG7888 INTRON CG7888
2R	6740379	2R_6740379_SNP [dm3] 2R_10852874_SNP [dm6]	G	T	4.791e^-4	0.935	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2R	10792230	2R_10792230_SNP [dm3] 2R_14904725_SNP [dm6]	T	G	4.792e^-4	0.935	NON_SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11786240	2R_11786240_SNP [dm3] 2R_15898735_SNP [dm6]	C	G	4.798e^-4	0.935	INTRON sli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12575177	3R_12575177_SNP [dm3] 3R_16749455_SNP [dm6]	C	A	4.815e^-4	0.935	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	1534138	X_1534138_SNP [dm3] X_1640105_SNP [dm6]	T	A	4.821e^-4	0.935	INTRON Mur2B & 1 other	TF binding site mE1_TFBS_HSA
3R	20454804	3R_20454804_SNP [dm3] 3R_24629082_SNP [dm6]	G	A	4.824e^-4	0.935	INTRON atl & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	20454822	3R_20454822_SNP [dm3] 3R_24629100_SNP [dm6]	G	A	4.824e^-4	0.935	INTRON atl & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	2544434	3R_2544434_DEL [dm3] 3R_6718712_DEL [dm6]	TCAGATTTAT	T	4.832e^-4	0.935	INTRON pb	regulatory region REDfly_CRMs
3R	2544445	3R_2544445_DEL [dm3] 3R_6718723_DEL [dm6]	CCGCTAAA	C	4.832e^-4	0.935	INTRON pb	regulatory region REDfly_CRMs
3L	4099915	3L_4099915_SNP [dm3] 3L_4099915_SNP [dm6]	T	C	4.842e^-4	0.935	INTRON CG14995	TF binding site mE1_TFBS_inv
3L	14153711	3L_14153711_SNP [dm3] 3L_14160611_SNP [dm6]	C	T	4.858e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs
2R	2680637	2R_2680637_SNP [dm3] 2R_6793132_SNP [dm6]	A	T	4.859e^-4	0.935	INTRON Epac
2R	4712150	2R_4712150_SNP [dm3] 2R_8824645_SNP [dm6]	G	A	4.860e^-4	0.935	INTRON sns
2R	12260458	2R_12260458_SNP [dm3] 2R_16372953_SNP [dm6]	A	G	4.869e^-4	0.935	INTERGENIC
2R	13045912	2R_13045912_SNP [dm3] 2R_17158407_SNP [dm6]	G	A	4.875e^-4	0.935	UTR_3_PRIME CG30458 UPSTREAM CG17287
2L	3326490	2L_3326490_SNP [dm3] 2L_3326490_SNP [dm6]	C	T	4.885e^-4	0.935	SYNONYMOUS_CODING CG33281
2R	13157342	2R_13157342_SNP [dm3] 2R_17269837_SNP [dm6]	G	C	4.898e^-4	0.935	INTRON mbl
3L	13845358	3L_13845358_SNP [dm3] 3L_13852258_SNP [dm6]	T	C	4.917e^-4	0.935	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13842992	3L_13842992_SNP [dm3] 3L_13849892_SNP [dm6]	A	T	4.919e^-4	0.935	SYNONYMOUS_CODING Hml
2L	14244503	2L_14244503_SNP [dm3] 2L_14244503_SNP [dm6]	G	A	4.920e^-4	0.935	INTERGENIC
2R	5071165	2R_5071165_INS [dm3] 2R_9183660_INS [dm6]	A	ATGTA	4.927e^-4	0.935	INTRON ltd EXON CR44284	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	12573042	X_12573042_SNP [dm3] X_12679009_SNP [dm6]	T	C	4.930e^-4	0.935	SYNONYMOUS_CODING Tis11	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1756321	2R_1756321_DEL [dm3] 2R_5868816_DEL [dm6]	TAGAATATTTATTCTTGATC...	T	4.935e^-4	0.935	INTERGENIC
X	17865041	X_17865041_SNP [dm3] X_17971008_SNP [dm6]	A	G	4.941e^-4	0.935	INTRON Sh
3L	11586119	3L_11586119_SNP [dm3] 3L_11593019_SNP [dm6]	A	G	4.942e^-4	0.935	UPSTREAM CR45442 & 1 other DOWNSTREAM CR45443 & 1 other INTERGENIC
2R	19518097	2R_19518097_SNP [dm3] 2R_23630574_SNP [dm6]	G	T	4.970e^-4	0.935	INTERGENIC
3R	16724037	3R_16724037_DEL [dm3] 3R_20898315_DEL [dm6]	AA	A	4.985e^-4	0.935	UPSTREAM CG10830 INTERGENIC
2R	6645242	2R_6645242_SNP [dm3] 2R_10757737_SNP [dm6]	C	A	5.010e^-4	0.935	INTRON CG33144	TF binding site mE1_TFBS_chinmo
3R	12631124	3R_12631124_SNP [dm3] 3R_16805402_SNP [dm6]	A	G	5.014e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2464954	3R_2464954_SNP [dm3] 3R_6639232_SNP [dm6]	G	A	5.033e^-4	0.935	INTERGENIC
2L	7872977	2L_7872977_SNP [dm3] 2L_7872977_SNP [dm6]	G	T	5.034e^-4	0.935	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
3L	12046169	3L_12046169_SNP [dm3] 3L_12053069_SNP [dm6]	G	A	5.037e^-4	0.935	INTRON rols
3L	12046173	3L_12046173_SNP [dm3] 3L_12053073_SNP [dm6]	C	G	5.037e^-4	0.935	INTRON rols
3L	12046180	3L_12046180_SNP [dm3] 3L_12053080_SNP [dm6]	A	C	5.037e^-4	0.935	INTRON rols
3R	2611068	3R_2611068_SNP [dm3] 3R_6785346_SNP [dm6]	G	C	5.054e^-4	0.935	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	13843217	3L_13843217_SNP [dm3] 3L_13850117_SNP [dm6]	C	T	5.054e^-4	0.935	SYNONYMOUS_CODING Hml
3L	21597760	3L_21597760_SNP [dm3] 3L_21604660_SNP [dm6]	T	A	5.056e^-4	0.935	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13982694	3L_13982694_SNP [dm3] 3L_13989594_SNP [dm6]	C	T	5.059e^-4	0.935	DOWNSTREAM CG9040 INTRON CG17364
2R	15544677	2R_15544677_SNP [dm3] 2R_19657172_SNP [dm6]	A	T	5.060e^-4	0.935	UPSTREAM CG15125 EXON CR44214
3R	893397	3R_893397_SNP [dm3] 3R_5067675_SNP [dm6]	A	C	5.061e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10592626	2R_10592626_SNP [dm3] 2R_14705121_SNP [dm6]	A	G	5.089e^-4	0.935	INTRON mspo
X	13470029	X_13470029_SNP [dm3] X_13575996_SNP [dm6]	G	A	5.102e^-4	0.935	UTR_5_PRIME Tango13 UPSTREAM Tango13	TF binding site BDTNP1_TFBS_twi
X	7484422	X_7484422_SNP [dm3] X_7590389_SNP [dm6]	C	T	5.111e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs
3L	11365346	3L_11365346_SNP [dm3] 3L_11372246_SNP [dm6]	G	A	5.127e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	14714371	2R_14714371_SNP [dm3] 2R_18826866_SNP [dm6]	T	C	5.127e^-4	0.935	INTRON CG15097
X	3765012	X_3765012_SNP [dm3] X_3870979_SNP [dm6]	T	G	5.133e^-4	0.935	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
2L	6490926	2L_6490926_SNP [dm3] 2L_6490926_SNP [dm6]	T	G	5.143e^-4	0.935	UPSTREAM CG31638 & 1 other DOWNSTREAM epsilonCOP INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6491013	2L_6491013_SNP [dm3] 2L_6491013_SNP [dm6]	T	A	5.143e^-4	0.935	UPSTREAM CG31638 & 1 other DOWNSTREAM epsilonCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	18459612	X_18459612_SNP [dm3] X_18565579_SNP [dm6]	G	A	5.153e^-4	0.935	UPSTREAM tRNA:CR32546 & 1 other INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	15399592	2R_15399592_SNP [dm3] 2R_19512087_SNP [dm6]	A	C	5.155e^-4	0.935	SYNONYMOUS_CODING Ir56d DOWNSTREAM Ir56c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15090727	3R_15090727_SNP [dm3] 3R_19265005_SNP [dm6]	G	T	5.174e^-4	0.935	INTERGENIC
3R	15090745	3R_15090745_SNP [dm3] 3R_19265023_SNP [dm6]	C	T	5.174e^-4	0.935	INTERGENIC
3R	15090771	3R_15090771_SNP [dm3] 3R_19265049_SNP [dm6]	G	T	5.174e^-4	0.935	INTERGENIC
3R	15090786	3R_15090786_SNP [dm3] 3R_19265064_SNP [dm6]	G	A	5.174e^-4	0.935	INTERGENIC
2L	11945270	2L_11945270_SNP [dm3] 2L_11945270_SNP [dm6]	C	T	5.186e^-4	0.935	SYNONYMOUS_CODING Cry	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3L	14956323	3L_14956323_SNP [dm3] 3L_14963223_SNP [dm6]	G	A	5.195e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7769151	2L_7769151_SNP [dm3] 2L_7769151_SNP [dm6]	G	A	5.199e^-4	0.935	INTRON CG7191
X	19053696	X_19053696_DEL [dm3] X_19159663_DEL [dm6]	AT	A	5.218e^-4	0.935	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5985245	3L_5985245_SNP [dm3] 3L_5992145_SNP [dm6]	G	C	5.227e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13344040	3L_13344040_SNP [dm3] 3L_13350940_SNP [dm6]	C	T	5.259e^-4	0.935	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8326733	2L_8326733_SNP [dm3] 2L_8326733_SNP [dm6]	T	C	5.264e^-4	0.935	UPSTREAM CG14275 INTERGENIC
3L	13013185	3L_13013185_DEL [dm3] 3L_13020085_DEL [dm6]	TCT	T	5.269e^-4	0.935	UTR_3_PRIME AdenoK UPSTREAM CR45445 DOWNSTREAM ste14
3L	5985151	3L_5985151_SNP [dm3] 3L_5992051_SNP [dm6]	G	C	5.293e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13419646	2L_13419646_SNP [dm3] 2L_13419646_SNP [dm6]	C	T	5.294e^-4	0.935	INTRON CG43850 & 1 other
2R	6743194	2R_6743194_SNP [dm3] 2R_10855689_SNP [dm6]	T	A	5.301e^-4	0.935	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	4446081	2L_4446081_DEL [dm3] 2L_4446081_DEL [dm6]	TA	G	5.306e^-4	0.935	DOWNSTREAM MFS18 INTRON Elp3	TF binding site mE1_TFBS_cad
3L	8592605	3L_8592605_SNP [dm3] 3L_8599505_SNP [dm6]	C	A	5.313e^-4	0.935	UTR_3_PRIME CG43078 & 1 other
2R	4748298	2R_4748298_SNP [dm3] 2R_8860793_SNP [dm6]	G	A	5.316e^-4	0.935	INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7483923	X_7483923_SNP [dm3] X_7589890_SNP [dm6]	A	T	5.326e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs
3L	15353733	3L_15353733_SNP [dm3] 3L_15360633_SNP [dm6]	C	T	5.338e^-4	0.935	INTERGENIC
X	8901200	X_8901200_SNP [dm3] X_9007167_SNP [dm6]	A	C	5.344e^-4	0.935	INTRON rdgA & 1 other
X	8901226	X_8901226_INS [dm3] X_9007193_INS [dm6]	G	GCAAA	5.344e^-4	0.935	INTRON rdgA & 1 other
X	8901229	X_8901229_INS [dm3] X_9007196_INS [dm6]	T	TCA	5.344e^-4	0.935	INTRON rdgA & 1 other
X	8901236	X_8901236_DEL [dm3] X_9007203_DEL [dm6]	AA	A	5.344e^-4	0.935	INTRON rdgA & 1 other
X	8901245	X_8901245_SNP [dm3] X_9007212_SNP [dm6]	T	A	5.344e^-4	0.935	INTRON rdgA & 1 other
3L	4759676	3L_4759676_DEL [dm3] 3L_4759676_DEL [dm6]	CC	C	5.370e^-4	0.935	DOWNSTREAM CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4748436	2R_4748436_SNP [dm3] 2R_8860931_SNP [dm6]	T	G	5.373e^-4	0.935	INTRON RyR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	2461773	3R_2461773_SNP [dm3] 3R_6636051_SNP [dm6]	T	A	5.377e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2467579	3R_2467579_SNP [dm3] 3R_6641857_SNP [dm6]	A	G	5.377e^-4	0.935	DOWNSTREAM CG1315 INTRON CG31286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15198492	3R_15198492_SNP [dm3] 3R_19372770_SNP [dm6]	T	C	5.381e^-4	0.935	DOWNSTREAM CG3581 INTRON Ino80	TF binding site BDTNP1_TFBS_hb
3L	14317890	3L_14317890_SNP [dm3] 3L_14324790_SNP [dm6]	C	T	5.384e^-4	0.935	INTRON fz & 1 other
X	12765689	X_12765689_SNP [dm3] X_12871656_SNP [dm6]	T	C	5.387e^-4	0.935	INTRON Pde9	TF binding site mE1_TFBS_sbb
2L	13896798	2L_13896798_SNP [dm3] 2L_13896798_SNP [dm6]	C	T	5.401e^-4	0.935	SPLICE_SITE_REGION CenG1A INTRON CenG1A	TF binding site mE1_TFBS_cad
2L	11578518	2L_11578518_SNP [dm3] 2L_11578518_SNP [dm6]	C	T	5.412e^-4	0.935	INTERGENIC
2L	14483035	2L_14483035_SNP [dm3] 2L_14483035_SNP [dm6]	A	T	5.432e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11315438	X_11315438_SNP [dm3] X_11421405_SNP [dm6]	G	T	5.442e^-4	0.935	INTERGENIC
X	11315455	X_11315455_SNP [dm3] X_11421422_SNP [dm6]	C	G	5.442e^-4	0.935	INTERGENIC
3R	2398797	3R_2398797_SNP [dm3] 3R_6573075_SNP [dm6]	G	C	5.446e^-4	0.935	INTRON dpr11
X	3819607	X_3819607_INS [dm3] X_3925574_INS [dm6]	T	TG	5.458e^-4	0.935	INTRON CG42541
2R	19071292	2R_19071292_SNP [dm3] 2R_23183769_SNP [dm6]	G	T	5.459e^-4	0.935	UPSTREAM CG13539 INTRON CG34371
2L	15134928	2L_15134928_SNP [dm3] 2L_15134928_SNP [dm6]	C	T	5.463e^-4	0.935	INTERGENIC
3L	18559238	3L_18559238_SNP [dm3] 3L_18566138_SNP [dm6]	T	G	5.471e^-4	0.935	INTRON AstC-R1
2L	16473160	2L_16473160_SNP [dm3] 2L_16473160_SNP [dm6]	T	A	5.471e^-4	0.935	INTRON dac	TF binding site mE1_TFBS_cad
X	2287985	X_2287985_SNP [dm3] X_2393952_SNP [dm6]	C	G	5.482e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14589992	3L_14589992_SNP [dm3] 3L_14596892_SNP [dm6]	T	C	5.499e^-4	0.935	INTRON HGTX
3L	2554552	3L_2554552_SNP [dm3] 3L_2554552_SNP [dm6]	C	G	5.503e^-4	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sbb mE1_TFBS_Ubx
3L	2554621	3L_2554621_DEL [dm3] 3L_2554621_DEL [dm6]	GTATTA	G	5.503e^-4	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3954623	2R_3954623_DEL [dm3] 2R_8067118_DEL [dm6]	TAACTCACCAAAAATAGTTT...	T	5.506e^-4	0.935	SPLICE_SITE_DONOR CG17977 CODON_DELETION CG17977 SPLICE_SITE_REGION CG17977 UPSTREAM lig INTRON CG17977	TF binding site BDTNP1_TFBS_dl
2R	6108274	2R_6108274_SNP [dm3] 2R_10220769_SNP [dm6]	T	G	5.517e^-4	0.935	INTRON Hr46 & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9662575	2L_9662575_SNP [dm3] 2L_9662575_SNP [dm6]	G	A	5.518e^-4	0.935	INTERGENIC
2L	16305509	2L_16305509_SNP [dm3] 2L_16305509_SNP [dm6]	C	T	5.529e^-4	0.935	UTR_3_PRIME c_2_M DOWNSTREAM CG5861
2L	16305511	2L_16305511_SNP [dm3] 2L_16305511_SNP [dm6]	A	G	5.529e^-4	0.935	UTR_3_PRIME c_2_M DOWNSTREAM CG5861
2L	16305540	2L_16305540_SNP [dm3] 2L_16305540_SNP [dm6]	A	T	5.529e^-4	0.935	UTR_3_PRIME c_2_M DOWNSTREAM CG5861
3R	15090655	3R_15090655_SNP [dm3] 3R_19264933_SNP [dm6]	G	A	5.561e^-4	0.935	INTERGENIC
3R	18894358	3R_18894358_SNP [dm3] 3R_23068636_SNP [dm6]	G	T	5.597e^-4	0.935	INTERGENIC
X	3765122	X_3765122_SNP [dm3] X_3871089_SNP [dm6]	T	C	5.603e^-4	0.935	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3R	26670412	3R_26670412_SNP [dm3] 3R_30844690_SNP [dm6]	C	T	5.605e^-4	0.935	INTERGENIC
3R	2434944	3R_2434944_SNP [dm3] 3R_6609222_SNP [dm6]	C	G	5.612e^-4	0.935	UPSTREAM glob2 INTERGENIC
2R	14269749	2R_14269749_SNP [dm3] 2R_18382244_SNP [dm6]	A	T	5.620e^-4	0.935	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
3L	4681359	3L_4681359_DEL [dm3] 3L_4681359_DEL [dm6]	TT	T	5.621e^-4	0.935	UTR_5_PRIME axo INTRON axo
2R	13045848	2R_13045848_SNP [dm3] 2R_17158343_SNP [dm6]	T	A	5.623e^-4	0.935	UTR_3_PRIME CG30458 UPSTREAM CG17287
3L	18221482	3L_18221482_SNP [dm3] 3L_18228382_SNP [dm6]	A	T	5.652e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2554287	3R_2554287_SNP [dm3] 3R_6728565_SNP [dm6]	C	A	5.665e^-4	0.935	INTRON pb	regulatory region FlyBase REDfly_CRMs
2R	12072746	2R_12072746_SNP [dm3] 2R_16185241_SNP [dm6]	C	G	5.668e^-4	0.935	NON_SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl
2R	12072760	2R_12072760_INS [dm3] 2R_16185255_INS [dm6]	G	GAGCTTTTGGCATTAGGCTC...	5.668e^-4	0.935	CODON_INSERTION CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl
2R	12072768	2R_12072768_SNP [dm3] 2R_16185263_SNP [dm6]	C	G	5.668e^-4	0.935	SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl
2R	18190102	2R_18190102_SNP [dm3] 2R_22302597_SNP [dm6]	C	T	5.671e^-4	0.935	INTRON wdp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2482143	3R_2482143_SNP [dm3] 3R_6656421_SNP [dm6]	A	C	5.678e^-4	0.935	UTR_3_PRIME CG1307 DOWNSTREAM Taf1
3R	2610310	3R_2610310_SNP [dm3] 3R_6784588_SNP [dm6]	T	A	5.700e^-4	0.935	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	11187892	3L_11187892_SNP [dm3] 3L_11194792_SNP [dm6]	T	C	5.702e^-4	0.935	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	11188004	3L_11188004_SNP [dm3] 3L_11194904_SNP [dm6]	T	C	5.702e^-4	0.935	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2R	12834615	2R_12834615_SNP [dm3] 2R_16947110_SNP [dm6]	C	A	5.711e^-4	0.935	SYNONYMOUS_CODING CG15614 UTR_3_PRIME CG34190 DOWNSTREAM Vha16-4
3R	12574311	3R_12574311_SNP [dm3] 3R_16748589_SNP [dm6]	A	C	5.721e^-4	0.935	INTRON bxd	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25999651	3R_25999651_SNP [dm3] 3R_30173929_SNP [dm6]	G	A	5.727e^-4	0.935	INTRON Mlc2
3L	11235268	3L_11235268_SNP [dm3] 3L_11242168_SNP [dm6]	G	C	5.735e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	8052043	2L_8052043_SNP [dm3] 2L_8052043_SNP [dm6]	G	A	5.743e^-4	0.935	SYNONYMOUS_CODING CG7466
3R	18894326	3R_18894326_SNP [dm3] 3R_23068604_SNP [dm6]	G	A	5.744e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18894331	3R_18894331_SNP [dm3] 3R_23068609_SNP [dm6]	G	T	5.744e^-4	0.935	INTERGENIC
3L	21593495	3L_21593495_SNP [dm3] 3L_21600395_SNP [dm6]	T	G	5.748e^-4	0.935	INTRON TfAP-2
3R	6863340	3R_6863340_SNP [dm3] 3R_11037618_SNP [dm6]	A	G	5.756e^-4	0.935	INTRON CG34114
3L	13724195	3L_13724195_SNP [dm3] 3L_13731095_SNP [dm6]	C	T	5.763e^-4	0.935	INTRON bru-3
3L	15749086	3L_15749086_SNP [dm3] 3L_15755986_SNP [dm6]	G	A	5.772e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	5756486	2L_5756486_SNP [dm3] 2L_5756486_SNP [dm6]	A	G	5.791e^-4	0.935	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1023827	2L_1023827_SNP [dm3] 2L_1023827_SNP [dm6]	T	A	5.792e^-4	0.935	INTRON IA-2
3L	13942031	3L_13942031_SNP [dm3] 3L_13948931_SNP [dm6]	A	G	5.796e^-4	0.935	INTRON CG32137	TF binding site BDTNP1_TFBS_dl
3L	18186126	3L_18186126_SNP [dm3] 3L_18193026_SNP [dm6]	C	T	5.808e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9503056	2L_9503056_SNP [dm3] 2L_9503056_SNP [dm6]	T	A	5.824e^-4	0.935	INTRON CG33298
2R	7831350	2R_7831350_SNP [dm3] 2R_11943845_SNP [dm6]	T	C	5.830e^-4	0.935	INTRON CG13188
2L	16605616	2L_16605616_SNP [dm3] 2L_16605616_SNP [dm6]	A	G	5.846e^-4	0.935	UPSTREAM CG31815 INTRON CG42389
2R	9867167	2R_9867167_SNP [dm3] 2R_13979662_SNP [dm6]	A	G	5.852e^-4	0.935	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15410694	2L_15410694_SNP [dm3] 2L_15410694_SNP [dm6]	C	A	5.868e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24230222	3R_24230222_SNP [dm3] 3R_28404500_SNP [dm6]	T	C	5.870e^-4	0.935	INTERGENIC
2L	1441390	2L_1441390_SNP [dm3] 2L_1441390_SNP [dm6]	C	G	5.891e^-4	0.935	INTERGENIC
2L	7708003	2L_7708003_SNP [dm3] 2L_7708003_SNP [dm6]	A	G	5.899e^-4	0.935	DOWNSTREAM CR44990 INTRON Tep3
2R	3956973	2R_3956973_SNP [dm3] 2R_8069468_SNP [dm6]	C	T	5.911e^-4	0.935	UPSTREAM lig INTRON lig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	3817197	3R_3817197_SNP [dm3] 3R_7991475_SNP [dm6]	C	A	5.922e^-4	0.935	INTRON CG2781
2L	9871718	2L_9871718_SNP [dm3] 2L_9871718_SNP [dm6]	G	C	5.930e^-4	0.935	INTRON nAChRalpha6
2R	6323440	2R_6323440_SNP [dm3] 2R_10435935_SNP [dm6]	C	G	5.935e^-4	0.935	UTR_3_PRIME RanBPM DOWNSTREAM CG12895
3L	13870191	3L_13870191_SNP [dm3] 3L_13877091_SNP [dm6]	C	T	5.939e^-4	0.935	INTRON dysc
3L	13882124	3L_13882124_SNP [dm3] 3L_13889024_SNP [dm6]	C	A	5.939e^-4	0.935	INTRON dysc
3L	13882125	3L_13882125_SNP [dm3] 3L_13889025_SNP [dm6]	C	T	5.939e^-4	0.935	INTRON dysc
3L	4374050	3L_4374050_SNP [dm3] 3L_4374050_SNP [dm6]	A	G	5.939e^-4	0.935	INTRON DopEcR
3R	11366967	3R_11366967_SNP [dm3] 3R_15541245_SNP [dm6]	T	G	5.939e^-4	0.935	INTRON CG18519	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19224304	2L_19224304_SNP [dm3] 2L_19224304_SNP [dm6]	C	G	5.965e^-4	0.935	INTERGENIC
2R	1018016	2R_1018016_SNP [dm3] 2R_5130511_SNP [dm6]	T	C	5.965e^-4	0.935	INTERGENIC
2L	14486792	2L_14486792_SNP [dm3] 2L_14486792_SNP [dm6]	C	T	5.976e^-4	0.935	DOWNSTREAM CR44731 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	2681435	2R_2681435_SNP [dm3] 2R_6793930_SNP [dm6]	A	G	5.984e^-4	0.935	INTRON Epac
2L	7105559	2L_7105559_DEL [dm3] 2L_7105559_DEL [dm6]	AT	A	5.991e^-4	0.935	INTRON Pvf3
X	3765089	X_3765089_SNP [dm3] X_3871056_SNP [dm6]	T	C	5.995e^-4	0.935	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
2L	9354250	2L_9354250_SNP [dm3] 2L_9354250_SNP [dm6]	A	G	6.000e^-4	0.935	INTERGENIC
2L	9354267	2L_9354267_SNP [dm3] 2L_9354267_SNP [dm6]	A	G	6.000e^-4	0.935	INTERGENIC
X	4204560	X_4204560_SNP [dm3] X_4310527_SNP [dm6]	T	A	6.015e^-4	0.935	DOWNSTREAM CG15579 INTERGENIC
3L	10403795	3L_10403795_DEL [dm3] 3L_10410695_DEL [dm6]	CT	C	6.038e^-4	0.935	DOWNSTREAM CR44543 INTERGENIC	TF binding site mE1_TFBS_inv
3L	3205692	3L_3205692_SNP [dm3] 3L_3205692_SNP [dm6]	C	A	6.059e^-4	0.935	SYNONYMOUS_CODING CG33160 UPSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
3L	2566746	3L_2566746_SNP [dm3] 3L_2566746_SNP [dm6]	T	C	6.072e^-4	0.935	SYNONYMOUS_CODING msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4431531	2R_4431531_SNP [dm3] 2R_8544026_SNP [dm6]	G	T	6.085e^-4	0.935	UPSTREAM CR44279 INTERGENIC
3L	6677350	3L_6677350_SNP [dm3] 3L_6684250_SNP [dm6]	A	T	6.101e^-4	0.935	INTERGENIC
3R	26935733	3R_26935733_SNP [dm3] 3R_31110011_SNP [dm6]	T	A	6.115e^-4	0.935	UPSTREAM CG11318 INTERGENIC
3R	18894392	3R_18894392_SNP [dm3] 3R_23068670_SNP [dm6]	C	T	6.120e^-4	0.935	INTERGENIC
3L	16981524	3L_16981524_SNP [dm3] 3L_16988424_SNP [dm6]	G	T	6.122e^-4	0.935	INTRON Exn
2L	1196019	2L_1196019_SNP [dm3] 2L_1196019_SNP [dm6]	T	C	6.133e^-4	0.935	INTRON CG5001
2L	8784912	2L_8784912_SNP [dm3] 2L_8784912_SNP [dm6]	C	T	6.143e^-4	0.935	INTERGENIC
2R	20213787	2R_20213787_SNP [dm3] 2R_24326264_SNP [dm6]	A	G	6.151e^-4	0.935	INTRON CR44810
2L	13057637	2L_13057637_SNP [dm3] 2L_13057637_SNP [dm6]	C	T	6.152e^-4	0.935	INTRON CG9932
X	20228269	X_20228269_SNP [dm3] X_20357242_SNP [dm6]	T	C	6.155e^-4	0.935	INTERGENIC
X	13346440	X_13346440_SNP [dm3] X_13452407_SNP [dm6]	G	A	6.159e^-4	0.935	INTRON Neto
X	16424983	X_16424983_SNP [dm3] X_16530950_SNP [dm6]	T	C	6.162e^-4	0.935	INTRON para
2R	6645265	2R_6645265_SNP [dm3] 2R_10757760_SNP [dm6]	C	A	6.179e^-4	0.935	INTRON CG33144	TF binding site mE1_TFBS_chinmo
3R	3450802	3R_3450802_SNP [dm3] 3R_7625080_SNP [dm6]	A	G	6.184e^-4	0.935	INTRON CG34127
3L	13853242	3L_13853242_SNP [dm3] 3L_13860142_SNP [dm6]	A	C	6.185e^-4	0.935	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
3L	4983945	3L_4983945_INS [dm3] 3L_4983945_INS [dm6]	C	CG	6.194e^-4	0.935	INTRON Con
3L	5976776	3L_5976776_SNP [dm3] 3L_5983676_SNP [dm6]	A	G	6.211e^-4	0.935	DOWNSTREAM CR45440 EXON CR45439	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	4733667	2R_4733667_SNP [dm3] 2R_8846162_SNP [dm6]	T	C	6.250e^-4	0.935	INTRON sns
2R	4157542	2R_4157542_SNP [dm3] 2R_8270037_SNP [dm6]	G	T	6.257e^-4	0.935	UPSTREAM CG30371 INTERGENIC
3L	15000891	3L_15000891_INS [dm3] 3L_15007791_INS [dm6]	T	TAGTTGT	6.259e^-4	0.935	INTRON Reck
3R	2464630	3R_2464630_SNP [dm3] 3R_6638908_SNP [dm6]	C	A	6.261e^-4	0.935	INTERGENIC
3R	2465757	3R_2465757_SNP [dm3] 3R_6640035_SNP [dm6]	G	A	6.265e^-4	0.935	INTERGENIC
X	3759797	X_3759797_SNP [dm3] X_3865764_SNP [dm6]	C	T	6.273e^-4	0.935	INTRON yin
3L	8033192	3L_8033192_INS [dm3] 3L_8040092_INS [dm6]	C	CGGAC	6.287e^-4	0.935	INTRON nmo
2R	14572553	2R_14572553_SNP [dm3] 2R_18685048_SNP [dm6]	C	A	6.290e^-4	0.935	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2414148	2R_2414148_SNP [dm3] 2R_6526643_SNP [dm6]	C	A	6.292e^-4	0.935	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad
3L	18153365	3L_18153365_SNP [dm3] 3L_18160265_SNP [dm6]	A	G	6.296e^-4	0.935	INTRON CG13699
X	9692550	X_9692550_DEL [dm3] X_9798517_DEL [dm6]	CATGT	C	6.321e^-4	0.935	INTRON CG32698
3L	2552427	3L_2552427_SNP [dm3] 3L_2552427_SNP [dm6]	A	T	6.341e^-4	0.935	INTRON Spn	TF binding site BDTNP1_TFBS_dl
2L	15018628	2L_15018628_SNP [dm3] 2L_15018628_SNP [dm6]	T	C	6.342e^-4	0.935	INTRON GABA-B-R1
2L	1443498	2L_1443498_SNP [dm3] 2L_1443498_SNP [dm6]	G	A	6.344e^-4	0.935	UTR_3_PRIME CG43402 DOWNSTREAM CG43402
3L	3631298	3L_3631298_SNP [dm3] 3L_3631298_SNP [dm6]	A	G	6.346e^-4	0.935	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8368662	2L_8368662_SNP [dm3] 2L_8368662_SNP [dm6]	T	C	6.352e^-4	0.935	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
2L	8368718	2L_8368718_SNP [dm3] 2L_8368718_SNP [dm6]	G	T	6.352e^-4	0.935	INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2R	16101472	2R_16101472_SNP [dm3] 2R_20213967_SNP [dm6]	A	G	6.353e^-4	0.935	INTERGENIC
2R	16075281	2R_16075281_SNP [dm3] 2R_20187776_SNP [dm6]	T	G	6.359e^-4	0.935	INTERGENIC
2R	8540827	2R_8540827_SNP [dm3] 2R_12653322_SNP [dm6]	G	T	6.378e^-4	0.935	SYNONYMOUS_CODING ZnT49B UPSTREAM CG8778
2R	8540929	2R_8540929_SNP [dm3] 2R_12653424_SNP [dm6]	T	C	6.378e^-4	0.935	SYNONYMOUS_CODING ZnT49B UPSTREAM CG8778
3L	11069197	3L_11069197_SNP [dm3] 3L_11076097_SNP [dm6]	A	G	6.396e^-4	0.935	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7435549	3L_7435549_SNP [dm3] 3L_7442449_SNP [dm6]	T	C	6.398e^-4	0.935	INTRON CG42458
3L	23059840	3L_23059840_SNP [dm3] 3L_23066740_SNP [dm6]	C	T	6.407e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi transposable element FlyBase
X	3763687	X_3763687_SNP [dm3] X_3869654_SNP [dm6]	C	A	6.420e^-4	0.935	SPLICE_SITE_REGION yin UTR_5_PRIME CG2930 INTRON yin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12578891	2R_12578891_MNP [dm3] 2R_16691386_MNP [dm6]	TAA	ATC	6.423e^-4	0.935	UPSTREAM CG5210 INTRON CG30463 & 1 other
2R	12578895	2R_12578895_DEL [dm3] 2R_16691390_DEL [dm6]	TTCAAG	T	6.423e^-4	0.935	UPSTREAM CG5210 INTRON CG30463 & 1 other
2R	12578903	2R_12578903_SNP [dm3] 2R_16691398_SNP [dm6]	G	C	6.423e^-4	0.935	UPSTREAM CG5210 INTRON CG30463 & 1 other
2R	12076193	2R_12076193_SNP [dm3] 2R_16188688_SNP [dm6]	A	G	6.427e^-4	0.935	NON_SYNONYMOUS_CODING clu START_GAINED clu UTR_5_PRIME clu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	1728566	2R_1728566_SNP [dm3] 2R_5841061_SNP [dm6]	G	C	6.436e^-4	0.935	INTRON dpr12
3R	12632215	3R_12632215_SNP [dm3] 3R_16806493_SNP [dm6]	T	A	6.438e^-4	0.935	DOWNSTREAM abd-A INTERGENIC	TF binding site mE1_TFBS_cad
X	13091054	X_13091054_SNP [dm3] X_13197021_SNP [dm6]	A	C	6.447e^-4	0.935	INTRON sno	TF binding site mE1_TFBS_sens
2L	11578416	2L_11578416_SNP [dm3] 2L_11578416_SNP [dm6]	T	A	6.447e^-4	0.935	INTERGENIC
2L	11578420	2L_11578420_DEL [dm3] 2L_11578420_DEL [dm6]	TA	T	6.447e^-4	0.935	INTERGENIC
3R	19964797	3R_19964797_SNP [dm3] 3R_24139075_SNP [dm6]	C	T	6.451e^-4	0.935	INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4707635	2R_4707635_SNP [dm3] 2R_8820130_SNP [dm6]	C	T	6.466e^-4	0.935	INTRON sns
3R	23522830	3R_23522830_SNP [dm3] 3R_27697108_SNP [dm6]	A	T	6.482e^-4	0.935	DOWNSTREAM CG43320 INTRON ALiX	TF binding site mE1_TFBS_chinmo
3R	23522835	3R_23522835_SNP [dm3] 3R_27697113_SNP [dm6]	C	A	6.482e^-4	0.935	DOWNSTREAM CG43320 INTRON ALiX	TF binding site mE1_TFBS_chinmo
3R	23522854	3R_23522854_SNP [dm3] 3R_27697132_SNP [dm6]	C	T	6.482e^-4	0.935	SPLICE_SITE_REGION ALiX DOWNSTREAM CG43320 INTRON ALiX	TF binding site mE1_TFBS_chinmo
2R	12476878	2R_12476878_SNP [dm3] 2R_16589373_SNP [dm6]	A	G	6.489e^-4	0.935	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	18462623	X_18462623_DEL [dm3] X_18568590_DEL [dm6]	TAGAA	CT	6.489e^-4	0.935	INTRON Bx	TF binding site mE1_TFBS_chinmo
X	3756631	X_3756631_SNP [dm3] X_3862598_SNP [dm6]	C	T	6.493e^-4	0.935	UPSTREAM roX1 DOWNSTREAM yin EXON roX1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	2767411	3L_2767411_SNP [dm3] 3L_2767411_SNP [dm6]	G	A	6.506e^-4	0.935	SYNONYMOUS_CODING CG1240 UPSTREAM Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15256763	2R_15256763_SNP [dm3] 2R_19369258_SNP [dm6]	G	A	6.508e^-4	0.935	SYNONYMOUS_CODING CG9416
2R	1426683	2R_1426683_SNP [dm3] 2R_5539178_SNP [dm6]	T	C	6.514e^-4	0.935	INTRON CG30438
3R	12115290	3R_12115290_SNP [dm3] 3R_16289568_SNP [dm6]	A	C	6.523e^-4	0.935	INTRON gish	TF binding site mE1_TFBS_inv
3R	26571821	3R_26571821_SNP [dm3] 3R_30746099_SNP [dm6]	T	G	6.523e^-4	0.935	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
2L	9813210	2L_9813210_SNP [dm3] 2L_9813210_SNP [dm6]	T	A	6.525e^-4	0.935	INTRON nAChRalpha6
2R	6852786	2R_6852786_SNP [dm3] 2R_10965281_SNP [dm6]	T	G	6.531e^-4	0.935	INTERGENIC
2R	10837276	2R_10837276_SNP [dm3] 2R_14949771_SNP [dm6]	A	T	6.540e^-4	0.935	UPSTREAM aPKC INTRON aPKC	TF binding site mE1_TFBS_Trl
3L	13871587	3L_13871587_INS [dm3] 3L_13878487_INS [dm6]	A	AGT	6.545e^-4	0.935	UPSTREAM CG13737 INTRON dysc	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6022734	2L_6022734_SNP [dm3] 2L_6022734_SNP [dm6]	A	G	6.565e^-4	0.935	DOWNSTREAM CG9107 INTERGENIC	TF binding site mE1_TFBS_cad
2R	18545835	2R_18545835_SNP [dm3] 2R_22658330_SNP [dm6]	G	T	6.574e^-4	0.935	INTRON CG13510 & 2 others
3R	14452591	3R_14452591_DEL [dm3] 3R_18626869_DEL [dm6]	CTAG	GGC	6.583e^-4	0.935	INTRON qin
2R	6324145	2R_6324145_SNP [dm3] 2R_10436640_SNP [dm6]	G	A	6.586e^-4	0.935	UTR_3_PRIME CG12895 DOWNSTREAM CG12895 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11171089	3L_11171089_SNP [dm3] 3L_11177989_SNP [dm6]	A	G	6.586e^-4	0.935	UTR_3_PRIME GlcAT-P
2L	11940656	2L_11940656_SNP [dm3] 2L_11940656_SNP [dm6]	A	T	6.598e^-4	0.935	INTERGENIC
3R	11477091	3R_11477091_SNP [dm3] 3R_15651369_SNP [dm6]	A	G	6.599e^-4	0.935	INTERGENIC
2L	4153421	2L_4153421_SNP [dm3] 2L_4153421_SNP [dm6]	C	A	6.606e^-4	0.935	INTERGENIC
3R	14843010	3R_14843010_SNP [dm3] 3R_19017288_SNP [dm6]	A	G	6.624e^-4	0.935	SYNONYMOUS_CODING gukh INTRON gukh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1352419	2R_1352419_SNP [dm3] 2R_5464914_SNP [dm6]	G	T	6.626e^-4	0.935	INTERGENIC	transposable element FlyBase
3L	18236481	3L_18236481_SNP [dm3] 3L_18243381_SNP [dm6]	T	G	6.628e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9353642	2L_9353642_SNP [dm3] 2L_9353642_SNP [dm6]	A	G	6.636e^-4	0.935	INTERGENIC
3R	6864623	3R_6864623_SNP [dm3] 3R_11038901_SNP [dm6]	G	C	6.660e^-4	0.935	INTRON CG34114	TF binding site mE1_TFBS_inv
2R	1069292	2R_1069292_SNP [dm3] 2R_5181787_SNP [dm6]	G	A	6.666e^-4	0.935	INTRON Nipped-A
2L	7844229	2L_7844229_SNP [dm3] 2L_7844229_SNP [dm6]	G	A	6.670e^-4	0.935	DOWNSTREAM CG14535 INTERGENIC
2L	7844242	2L_7844242_SNP [dm3] 2L_7844242_SNP [dm6]	A	C	6.670e^-4	0.935	DOWNSTREAM CG14535 INTERGENIC
2R	13381075	2R_13381075_SNP [dm3] 2R_17493570_SNP [dm6]	A	G	6.673e^-4	0.935	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	561448	3L_561448_SNP [dm3] 3L_561448_SNP [dm6]	G	T	6.675e^-4	0.935	INTRON hipk	TF binding site BDTNP1_TFBS_twi
3L	7385556	3L_7385556_SNP [dm3] 3L_7392456_SNP [dm6]	G	C	6.679e^-4	0.935	INTRON CG8563
X	17166791	X_17166791_SNP [dm3] X_17272758_SNP [dm6]	A	C	6.687e^-4	0.935	INTRON f	TF binding site mE1_TFBS_cad
3L	14902710	3L_14902710_SNP [dm3] 3L_14909610_SNP [dm6]	C	G	6.704e^-4	0.935	INTRON DCX-EMAP	TF binding site mE1_TFBS_cad
2R	19180402	2R_19180402_SNP [dm3] 2R_23292879_SNP [dm6]	C	A	6.710e^-4	0.935	INTERGENIC
3R	26781285	3R_26781285_SNP [dm3] 3R_30955563_SNP [dm6]	G	C	6.719e^-4	0.935	INTERGENIC
3L	4637228	3L_4637228_INS [dm3] 3L_4637228_INS [dm6]	C	CGC	6.754e^-4	0.935	UTR_3_PRIME axo INTRON axo
2R	6742889	2R_6742889_SNP [dm3] 2R_10855384_SNP [dm6]	A	T	6.762e^-4	0.935	DOWNSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	9532606	3R_9532606_SNP [dm3] 3R_13706884_SNP [dm6]	C	T	6.774e^-4	0.935	UTR_5_PRIME Adgf-C
3R	10866242	3R_10866242_SNP [dm3] 3R_15040520_SNP [dm6]	G	A	6.778e^-4	0.935	DOWNSTREAM CR44944 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	15248234	2L_15248234_SNP [dm3] 2L_15248234_SNP [dm6]	T	C	6.779e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
X	3542539	X_3542539_SNP [dm3] X_3648506_SNP [dm6]	T	C	6.787e^-4	0.935	INTRON AstA-R1
2R	1708680	2R_1708680_SNP [dm3] 2R_5821175_SNP [dm6]	A	C	6.804e^-4	0.935	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26289014	3R_26289014_SNP [dm3] 3R_30463292_SNP [dm6]	T	C	6.808e^-4	0.935	SYNONYMOUS_CODING CDase	TF binding site mE1_TFBS_chinmo
3L	21597125	3L_21597125_SNP [dm3] 3L_21604025_SNP [dm6]	T	A	6.826e^-4	0.935	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	21597127	3L_21597127_INS [dm3] 3L_21604027_INS [dm6]	A	ACATTT	6.826e^-4	0.935	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	21597130	3L_21597130_SNP [dm3] 3L_21604030_SNP [dm6]	C	T	6.826e^-4	0.935	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	21597131	3L_21597131_SNP [dm3] 3L_21604031_SNP [dm6]	C	T	6.826e^-4	0.935	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3053836	3L_3053836_SNP [dm3] 3L_3053836_SNP [dm6]	G	T	6.826e^-4	0.935	NON_SYNONYMOUS_CODING CG1271	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12627829	3R_12627829_SNP [dm3] 3R_16802107_SNP [dm6]	A	T	6.846e^-4	0.935	DOWNSTREAM CR45750 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12734760	3L_12734760_DEL [dm3] 3L_12741660_DEL [dm6]	TT	T	6.848e^-4	0.935	UPSTREAM CG32112 DOWNSTREAM Ptp69D INTERGENIC
X	3757708	X_3757708_SNP [dm3] X_3863675_SNP [dm6]	C	G	6.867e^-4	0.935	SYNONYMOUS_CODING yin UPSTREAM roX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15024308	3L_15024308_SNP [dm3] 3L_15031208_SNP [dm6]	G	T	6.868e^-4	0.935	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12619180	3L_12619180_SNP [dm3] 3L_12626080_SNP [dm6]	T	C	6.881e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12619188	3L_12619188_SNP [dm3] 3L_12626088_SNP [dm6]	T	A	6.881e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	841090	3R_841090_SNP [dm3] 3R_5015368_SNP [dm6]	C	T	6.883e^-4	0.935	UPSTREAM CR45585 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10057446	2R_10057446_SNP [dm3] 2R_14169941_SNP [dm6]	G	A	6.889e^-4	0.935	SYNONYMOUS_CODING CG18324 UPSTREAM CG8331 EXON CR44368	TF binding site BDTNP1_TFBS_twi
2R	10060925	2R_10060925_SNP [dm3] 2R_14173420_SNP [dm6]	G	A	6.889e^-4	0.935	SYNONYMOUS_CODING mRpS16 UPSTREAM cg DOWNSTREAM CG8331	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9550718	3R_9550718_SNP [dm3] 3R_13724996_SNP [dm6]	C	A	6.903e^-4	0.935	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2R	13157461	2R_13157461_SNP [dm3] 2R_17269956_SNP [dm6]	T	A	6.906e^-4	0.935	INTRON mbl
2L	7873236	2L_7873236_SNP [dm3] 2L_7873236_SNP [dm6]	C	G	6.907e^-4	0.935	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
2L	3449450	2L_3449450_SNP [dm3] 2L_3449450_SNP [dm6]	A	C	6.918e^-4	0.935	UPSTREAM Snx1 INTERGENIC
2L	15506310	2L_15506310_SNP [dm3] 2L_15506310_SNP [dm6]	T	A	6.936e^-4	0.935	INTERGENIC
2R	12847637	2R_12847637_SNP [dm3] 2R_16960132_SNP [dm6]	G	A	6.948e^-4	0.935	UTR_5_PRIME CG9010
3R	26781654	3R_26781654_SNP [dm3] 3R_30955932_SNP [dm6]	T	G	6.949e^-4	0.935	INTERGENIC
2R	12685556	2R_12685556_SNP [dm3] 2R_16798051_SNP [dm6]	A	G	6.952e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14626469	X_14626469_SNP [dm3] X_14732436_SNP [dm6]	G	A	6.956e^-4	0.935	INTRON NetB
3L	2554791	3L_2554791_SNP [dm3] 3L_2554791_SNP [dm6]	A	T	6.958e^-4	0.935	UPSTREAM Spn DOWNSTREAM msn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	26670369	3R_26670369_DEL [dm3] 3R_30844647_DEL [dm6]	TGTACT	T	6.987e^-4	0.935	INTERGENIC
2R	16086797	2R_16086797_SNP [dm3] 2R_20199292_SNP [dm6]	C	T	6.996e^-4	0.935	INTERGENIC
2L	12065172	2L_12065172_SNP [dm3] 2L_12065172_SNP [dm6]	C	T	7.000e^-4	0.935	INTRON CG14946	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9550738	3R_9550738_SNP [dm3] 3R_13725016_SNP [dm6]	C	A	7.002e^-4	0.935	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3R	12019574	3R_12019574_SNP [dm3] 3R_16193852_SNP [dm6]	T	A	7.017e^-4	0.935	UPSTREAM sra INTRON sra
3L	14334467	3L_14334467_SNP [dm3] 3L_14341367_SNP [dm6]	G	C	7.018e^-4	0.935	INTRON fz	TF binding site BDTNP1_TFBS_dl
2L	1983289	2L_1983289_SNP [dm3] 2L_1983289_SNP [dm6]	G	C	7.030e^-4	0.935	SYNONYMOUS_CODING CG7289	TF binding site mE1_TFBS_sens
3R	26779241	3R_26779241_SNP [dm3] 3R_30953519_SNP [dm6]	G	A	7.041e^-4	0.935	INTERGENIC
2L	5242951	2L_5242951_SNP [dm3] 2L_5242951_SNP [dm6]	T	G	7.044e^-4	0.935	UPSTREAM tkv INTRON tkv EXON CR14033	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	600388	3L_600388_SNP [dm3] 3L_600388_SNP [dm6]	C	T	7.045e^-4	0.935	SYNONYMOUS_CODING CG13893	TF binding site mE1_TFBS_inv
3L	11187715	3L_11187715_SNP [dm3] 3L_11194615_SNP [dm6]	G	A	7.049e^-4	0.935	INTRON GlcAT-P
2L	5550214	2L_5550214_SNP [dm3] 2L_5550214_SNP [dm6]	G	A	7.051e^-4	0.935	SYNONYMOUS_CODING CG14014 DOWNSTREAM Oscillin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6152145	2R_6152145_INS [dm3] 2R_10264640_INS [dm6]	A	AAAGTATATGA...	7.057e^-4	0.935	UPSTREAM CR30009 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10261991	3R_10261991_SNP [dm3] 3R_14436269_SNP [dm6]	A	G	7.061e^-4	0.935	INTRON cv-c
2L	1978627	2L_1978627_SNP [dm3] 2L_1978627_SNP [dm6]	T	C	7.085e^-4	0.935	SYNONYMOUS_CODING CG15356	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9476812	3L_9476812_SNP [dm3] 3L_9483712_SNP [dm6]	G	A	7.086e^-4	0.935	SYNONYMOUS_CODING Jarid2	TF binding site mE1_TFBS_chinmo
3L	13416034	3L_13416034_SNP [dm3] 3L_13422934_SNP [dm6]	T	C	7.095e^-4	0.935	UPSTREAM CG32121 DOWNSTREAM CG33263 INTERGENIC
3R	2380566	3R_2380566_SNP [dm3] 3R_6554844_SNP [dm6]	C	T	7.121e^-4	0.935	INTRON dpr11
3R	12539359	3R_12539359_SNP [dm3] 3R_16713637_SNP [dm6]	C	T	7.122e^-4	0.935	INTRON Ubx	TF binding site BDTNP1_TFBS_dl
3L	8665022	3L_8665022_SNP [dm3] 3L_8671922_SNP [dm6]	A	T	7.136e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8665023	3L_8665023_SNP [dm3] 3L_8671923_SNP [dm6]	T	C	7.136e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8665057	3L_8665057_SNP [dm3] 3L_8671957_SNP [dm6]	A	C	7.136e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8665089	3L_8665089_SNP [dm3] 3L_8671989_SNP [dm6]	C	G	7.136e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	12133357	2R_12133357_SNP [dm3] 2R_16245852_SNP [dm6]	T	A	7.141e^-4	0.935	INTRON CngA	TF binding site mE1_TFBS_chinmo
2R	10299092	2R_10299092_SNP [dm3] 2R_14411587_SNP [dm6]	A	G	7.154e^-4	0.935	UPSTREAM Sin1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16731408	3L_16731408_SNP [dm3] 3L_16738308_SNP [dm6]	G	A	7.155e^-4	0.935	INTRON CG9701
3R	2436067	3R_2436067_SNP [dm3] 3R_6610345_SNP [dm6]	T	A	7.175e^-4	0.935	INTERGENIC
2L	3927415	2L_3927415_SNP [dm3] 2L_3927415_SNP [dm6]	C	T	7.197e^-4	0.935	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	17201869	3L_17201869_SNP [dm3] 3L_17208769_SNP [dm6]	C	G	7.214e^-4	0.935	INTRON Rbp6	TF binding site mE1_TFBS_chinmo
2R	5010086	2R_5010086_SNP [dm3] 2R_9122581_SNP [dm6]	G	C	7.215e^-4	0.935	DOWNSTREAM Su_var_2-10 & 1 other INTRON GstE13
2L	9522041	2L_9522041_SNP [dm3] 2L_9522041_SNP [dm6]	C	A	7.219e^-4	0.935	INTRON Oatp30B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5664450	3L_5664450_SNP [dm3] 3L_5671350_SNP [dm6]	G	T	7.224e^-4	0.935	INTRON sif
3R	18894359	3R_18894359_SNP [dm3] 3R_23068637_SNP [dm6]	C	T	7.245e^-4	0.935	INTERGENIC
3L	13875855	3L_13875855_SNP [dm3] 3L_13882755_SNP [dm6]	T	G	7.252e^-4	0.935	NON_SYNONYMOUS_CODING CG13737 INTRON dysc
3L	535760	3L_535760_SNP [dm3] 3L_535760_SNP [dm6]	G	T	7.255e^-4	0.935	INTRON klar	TF binding site mE1_TFBS_Trl
X	8901336	X_8901336_SNP [dm3] X_9007303_SNP [dm6]	C	G	7.256e^-4	0.935	INTRON rdgA & 1 other
2R	8541067	2R_8541067_SNP [dm3] 2R_12653562_SNP [dm6]	A	G	7.257e^-4	0.935	SYNONYMOUS_CODING ZnT49B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9445547	2L_9445547_SNP [dm3] 2L_9445547_SNP [dm6]	A	T	7.258e^-4	0.935	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9445549	2L_9445549_SNP [dm3] 2L_9445549_SNP [dm6]	T	A	7.258e^-4	0.935	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9445562	2L_9445562_SNP [dm3] 2L_9445562_SNP [dm6]	T	A	7.258e^-4	0.935	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	9445566	2L_9445566_SNP [dm3] 2L_9445566_SNP [dm6]	C	T	7.258e^-4	0.935	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	9065194	3L_9065194_SNP [dm3] 3L_9072094_SNP [dm6]	C	T	7.258e^-4	0.935	INTRON CG4911	TF binding site BDTNP1_TFBS_dl
2R	1428846	2R_1428846_SNP [dm3] 2R_5541341_SNP [dm6]	T	G	7.279e^-4	0.935	INTRON CG30438
3R	3161258	3R_3161258_SNP [dm3] 3R_7335536_SNP [dm6]	G	C	7.287e^-4	0.935	INTERGENIC
2L	6762868	2L_6762868_SNP [dm3] 2L_6762868_SNP [dm6]	G	A	7.314e^-4	0.935	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_sens
3R	27451271	3R_27451271_SNP [dm3] 3R_31625549_SNP [dm6]	A	T	7.322e^-4	0.935	INTRON kek6
3R	958986	3R_958986_SNP [dm3] 3R_5133264_SNP [dm6]	G	C	7.336e^-4	0.935	INTERGENIC
2L	9445552	2L_9445552_SNP [dm3] 2L_9445552_SNP [dm6]	A	C	7.346e^-4	0.935	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2R	12072736	2R_12072736_SNP [dm3] 2R_16185231_SNP [dm6]	A	G	7.349e^-4	0.935	NON_SYNONYMOUS_CODING CG8441 DOWNSTREAM Lis-1	TF binding site BDTNP1_TFBS_dl
2R	6645239	2R_6645239_SNP [dm3] 2R_10757734_SNP [dm6]	G	A	7.366e^-4	0.935	INTRON CG33144	TF binding site mE1_TFBS_chinmo
3L	14772309	3L_14772309_SNP [dm3] 3L_14779209_SNP [dm6]	G	A	7.366e^-4	0.935	INTRON bmm
2L	11940649	2L_11940649_DEL [dm3] 2L_11940649_DEL [dm6]	TA	T	7.377e^-4	0.935	INTERGENIC
3R	810955	3R_810955_SNP [dm3] 3R_4985233_SNP [dm6]	C	A	7.406e^-4	0.935	INTRON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	6490990	2L_6490990_SNP [dm3] 2L_6490990_SNP [dm6]	T	C	7.416e^-4	0.935	UPSTREAM CG31638 & 1 other DOWNSTREAM epsilonCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	11589175	2L_11589175_SNP [dm3] 2L_11589175_SNP [dm6]	A	G	7.458e^-4	0.935	INTRON kek2 EXON CR44496
2L	1496625	2L_1496625_SNP [dm3] 2L_1496625_SNP [dm6]	G	T	7.459e^-4	0.935	NON_SYNONYMOUS_CODING CG31926 UPSTREAM CG31661
2R	12185244	2R_12185244_SNP [dm3] 2R_16297739_SNP [dm6]	C	A	7.467e^-4	0.935	UTR_3_PRIME CG43265 DOWNSTREAM Atg9
3L	10850293	3L_10850293_SNP [dm3] 3L_10857193_SNP [dm6]	A	C	7.469e^-4	0.935	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	12503347	X_12503347_SNP [dm3] X_12609314_SNP [dm6]	G	A	7.489e^-4	0.935	UTR_3_PRIME Sec16 DOWNSTREAM CG1463
X	21911100	X_21911100_SNP [dm3] X_22509264_SNP [dm6]	A	G	7.493e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26933027	3R_26933027_SNP [dm3] 3R_31107305_SNP [dm6]	G	A	7.496e^-4	0.935	NON_SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13446899	X_13446899_INS [dm3] X_13552866_INS [dm6]	T	TAT	7.498e^-4	0.935	UTR_3_PRIME CG11816
3R	9528050	3R_9528050_SNP [dm3] 3R_13702328_SNP [dm6]	T	G	7.498e^-4	0.935	NON_SYNONYMOUS_CODING ninaB DOWNSTREAM Adgf-D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14033285	3R_14033285_SNP [dm3] 3R_18207563_SNP [dm6]	A	G	7.500e^-4	0.935	INTRON CG7985
X	12601401	X_12601401_SNP [dm3] X_12707368_SNP [dm6]	A	G	7.535e^-4	0.935	NON_SYNONYMOUS_CODING CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl
2L	2424469	2L_2424469_SNP [dm3] 2L_2424469_SNP [dm6]	A	G	7.541e^-4	0.935	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	2424530	2L_2424530_SNP [dm3] 2L_2424530_SNP [dm6]	G	T	7.541e^-4	0.935	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	2424807	2L_2424807_SNP [dm3] 2L_2424807_SNP [dm6]	C	G	7.541e^-4	0.935	START_GAINED CG44139 UTR_5_PRIME CG44139 DOWNSTREAM CG9886
2L	2080059	2L_2080059_SNP [dm3] 2L_2080059_SNP [dm6]	T	G	7.543e^-4	0.935	UTR_5_PRIME CG12674 INTRON dpr3
3L	11444161	3L_11444161_SNP [dm3] 3L_11451061_SNP [dm6]	C	T	7.547e^-4	0.935	INTERGENIC
X	15006539	X_15006539_SNP [dm3] X_15112506_SNP [dm6]	A	T	7.559e^-4	0.935	UTR_3_PRIME Rab3-GEF DOWNSTREAM Cyp4s3
3L	14334561	3L_14334561_SNP [dm3] 3L_14341461_SNP [dm6]	T	A	7.584e^-4	0.935	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	17493227	3L_17493227_SNP [dm3] 3L_17500127_SNP [dm6]	C	A	7.590e^-4	0.935	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6663144	2R_6663144_SNP [dm3] 2R_10775639_SNP [dm6]	A	G	7.592e^-4	0.935	INTRON CG33144
X	14720332	X_14720332_SNP [dm3] X_14826299_SNP [dm6]	G	A	7.599e^-4	0.935	UPSTREAM rut DOWNSTREAM CG14408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12116051	2R_12116051_SNP [dm3] 2R_16228546_SNP [dm6]	T	C	7.602e^-4	0.935	SYNONYMOUS_CODING Tsf3 INTRON CG15706	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15248032	2L_15248032_SNP [dm3] 2L_15248032_SNP [dm6]	C	T	7.638e^-4	0.935	UPSTREAM ZnT35C & 1 other INTERGENIC
3L	1900529	3L_1900529_DEL [dm3] 3L_1900529_DEL [dm6]	AA	A	7.646e^-4	0.935	UTR_3_PRIME CG1887 INTRON CG1887
3L	3055895	3L_3055895_SNP [dm3] 3L_3055895_SNP [dm6]	A	C	7.649e^-4	0.935	DOWNSTREAM CG1271 & 2 others INTERGENIC
2R	15364831	2R_15364831_SNP [dm3] 2R_19477326_SNP [dm6]	C	A	7.658e^-4	0.935	INTRON par-1
3L	634807	3L_634807_SNP [dm3] 3L_634807_SNP [dm6]	A	T	7.660e^-4	0.935	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3765540	X_3765540_SNP [dm3] X_3871507_SNP [dm6]	C	T	7.660e^-4	0.935	UPSTREAM CG2930 INTRON yin & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	16448713	2L_16448713_SNP [dm3] 2L_16448713_SNP [dm6]	G	A	7.673e^-4	0.935	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	11940653	2L_11940653_SNP [dm3] 2L_11940653_SNP [dm6]	T	C	7.688e^-4	0.935	INTERGENIC
2R	6743263	2R_6743263_SNP [dm3] 2R_10855758_SNP [dm6]	A	C	7.712e^-4	0.935	INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	1130075	3R_1130075_SNP [dm3] 3R_5304353_SNP [dm6]	G	A	7.715e^-4	0.935	INTRON mtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7687457	2R_7687457_SNP [dm3] 2R_11799952_SNP [dm6]	T	C	7.724e^-4	0.935	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1900149	3L_1900149_SNP [dm3] 3L_1900149_SNP [dm6]	T	A	7.738e^-4	0.935	DOWNSTREAM CG1887 INTRON CG1887
3L	1900152	3L_1900152_DEL [dm3] 3L_1900152_DEL [dm6]	AT	C	7.738e^-4	0.935	DOWNSTREAM CG1887 INTRON CG1887
2L	7870207	2L_7870207_SNP [dm3] 2L_7870207_SNP [dm6]	C	G	7.761e^-4	0.935	INTRON Proc
3L	9865287	3L_9865287_DEL [dm3] 3L_9872187_DEL [dm6]	GTTAACGGATGG...	G	7.764e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	454954	3L_454954_SNP [dm3] 3L_454954_SNP [dm6]	T	A	7.773e^-4	0.935	INTRON klar
3L	10529693	3L_10529693_SNP [dm3] 3L_10536593_SNP [dm6]	T	A	7.790e^-4	0.935	INTRON A2bp1
3L	10124343	3L_10124343_SNP [dm3] 3L_10131243_SNP [dm6]	C	T	7.804e^-4	0.935	INTRON dpr6
2L	13632552	2L_13632552_SNP [dm3] 2L_13632552_SNP [dm6]	C	A	7.815e^-4	0.935	DOWNSTREAM CR43410 INTRON kuz
2L	13632565	2L_13632565_SNP [dm3] 2L_13632565_SNP [dm6]	T	C	7.815e^-4	0.935	DOWNSTREAM CR43410 INTRON kuz
2L	13632570	2L_13632570_SNP [dm3] 2L_13632570_SNP [dm6]	C	G	7.815e^-4	0.935	DOWNSTREAM CR43410 INTRON kuz
2R	16086791	2R_16086791_SNP [dm3] 2R_20199286_SNP [dm6]	T	C	7.833e^-4	0.935	INTERGENIC
3L	12309578	3L_12309578_SNP [dm3] 3L_12316478_SNP [dm6]	C	T	7.841e^-4	0.935	INTERGENIC
2L	9973184	2L_9973184_SNP [dm3] 2L_9973184_SNP [dm6]	A	T	7.845e^-4	0.935	INTERGENIC
2R	14701814	2R_14701814_SNP [dm3] 2R_18814309_SNP [dm6]	T	G	7.845e^-4	0.935	UPSTREAM CR43418 INTRON CG15096
2L	16620024	2L_16620024_SNP [dm3] 2L_16620024_SNP [dm6]	C	T	7.863e^-4	0.935	INTRON CG42389
2L	16620062	2L_16620062_SNP [dm3] 2L_16620062_SNP [dm6]	C	T	7.863e^-4	0.935	INTRON CG42389
3L	16287192	3L_16287192_SNP [dm3] 3L_16294092_SNP [dm6]	A	G	7.910e^-4	0.935	DOWNSTREAM CG4962 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17522456	2L_17522456_SNP [dm3] 2L_17522456_SNP [dm6]	G	A	7.916e^-4	0.935	SYNONYMOUS_CODING CG15143 INTRON Dhc36C	TF binding site mE1_TFBS_sens
3R	23522799	3R_23522799_DEL [dm3] 3R_27697077_DEL [dm6]	AA	G	7.943e^-4	0.935	SPLICE_SITE_REGION ALiX DOWNSTREAM CG43320 INTRON ALiX	TF binding site mE1_TFBS_chinmo
3L	18267380	3L_18267380_SNP [dm3] 3L_18274280_SNP [dm6]	G	A	7.958e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	4601220	3L_4601220_SNP [dm3] 3L_4601220_SNP [dm6]	T	A	7.958e^-4	0.935	INTRON Src64B
3R	5501052	3R_5501052_SNP [dm3] 3R_9675330_SNP [dm6]	T	A	7.959e^-4	0.935	UPSTREAM CG8358 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15179147	X_15179147_SNP [dm3] X_15285114_SNP [dm6]	G	A	7.980e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6667927	3R_6667927_SNP [dm3] 3R_10842205_SNP [dm6]	G	A	7.983e^-4	0.935	INTRON Cad86C	TF binding site mE1_TFBS_cad
3L	12050479	3L_12050479_SNP [dm3] 3L_12057379_SNP [dm6]	G	T	8.020e^-4	0.935	UPSTREAM rols INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6862891	3R_6862891_SNP [dm3] 3R_11037169_SNP [dm6]	G	T	8.022e^-4	0.935	INTRON CG34114
2R	1215778	2R_1215778_SNP [dm3] 2R_5328273_SNP [dm6]	A	G	8.041e^-4	0.935	INTRON sxc	transposable element FlyBase
2L	2797151	2L_2797151_SNP [dm3] 2L_2797151_SNP [dm6]	C	T	8.057e^-4	0.935	UPSTREAM CR43821 INTRON Syt1	TF binding site mE1_TFBS_Trl
2R	13844413	2R_13844413_SNP [dm3] 2R_17956908_SNP [dm6]	A	T	8.059e^-4	0.935	UPSTREAM PpY-55A INTERGENIC
2R	16086790	2R_16086790_SNP [dm3] 2R_20199285_SNP [dm6]	G	C	8.094e^-4	0.935	INTERGENIC
3L	4071028	3L_4071028_SNP [dm3] 3L_4071028_SNP [dm6]	A	T	8.112e^-4	0.935	DOWNSTREAM CG32259 INTRON wit	TF binding site BDTNP1_TFBS_dl
3L	18541316	3L_18541316_SNP [dm3] 3L_18548216_SNP [dm6]	C	T	8.114e^-4	0.935	INTERGENIC
3L	2228035	3L_2228035_SNP [dm3] 3L_2228035_SNP [dm6]	C	T	8.133e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16043751	2L_16043751_SNP [dm3] 2L_16043751_SNP [dm6]	A	T	8.139e^-4	0.935	UPSTREAM BicC INTRON BicC & 1 other
2R	8537421	2R_8537421_SNP [dm3] 2R_12649916_SNP [dm6]	G	A	8.140e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18185165	3L_18185165_SNP [dm3] 3L_18192065_SNP [dm6]	A	T	8.140e^-4	0.935	INTERGENIC
3L	3657496	3L_3657496_SNP [dm3] 3L_3657496_SNP [dm6]	A	G	8.171e^-4	0.935	INTERGENIC
3L	15741105	3L_15741105_SNP [dm3] 3L_15748005_SNP [dm6]	C	G	8.197e^-4	0.935	EXON CR45240	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17623872	2R_17623872_SNP [dm3] 2R_21736367_SNP [dm6]	G	A	8.200e^-4	0.935	INTERGENIC
2L	5117518	2L_5117518_SNP [dm3] 2L_5117518_SNP [dm6]	G	A	8.201e^-4	0.935	INTRON Msp300
3R	871185	3R_871185_DEL [dm3] 3R_5045463_DEL [dm6]	GGATG	G	8.222e^-4	0.935	EXON CR43635	TF binding site mE1_TFBS_cad
3R	19101245	3R_19101245_SNP [dm3] 3R_23275523_SNP [dm6]	C	A	8.226e^-4	0.935	INTRON orb	TF binding site mE1_TFBS_cad
3R	2465674	3R_2465674_SNP [dm3] 3R_6639952_SNP [dm6]	T	C	8.236e^-4	0.935	INTERGENIC
3R	12960166	3R_12960166_SNP [dm3] 3R_17134444_SNP [dm6]	T	C	8.237e^-4	0.935	DOWNSTREAM CG31266 INTRON CG31267
3L	13840621	3L_13840621_SNP [dm3] 3L_13847521_SNP [dm6]	T	C	8.239e^-4	0.935	SYNONYMOUS_CODING Hml
2R	13008027	2R_13008027_SNP [dm3] 2R_17120522_SNP [dm6]	C	G	8.243e^-4	0.935	UPSTREAM CR45272 & 1 other INTERGENIC

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.197e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.03127

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	3.4676	0.0626

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1158 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	13871019	3L_13871019_SNP [dm3] 3L_13877919_SNP [dm6]	C	T	4.767e^-6	1	INTRON dysc
2L	11485934	2L_11485934_SNP [dm3] 2L_11485934_SNP [dm6]	C	T	8.338e^-6	1	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485937	2L_11485937_SNP [dm3] 2L_11485937_SNP [dm6]	T	C	8.338e^-6	1	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14334482	3L_14334482_SNP [dm3] 3L_14341382_SNP [dm6]	A	G	1.467e^-5	1	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	14334466	3L_14334466_SNP [dm3] 3L_14341366_SNP [dm6]	T	C	1.577e^-5	1	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	8244847	3L_8244847_SNP [dm3] 3L_8251747_SNP [dm6]	A	T	1.746e^-5	1	INTRON Dscam4
3L	13891310	3L_13891310_SNP [dm3] 3L_13898210_SNP [dm6]	G	A	2.094e^-5	1	INTRON dysc
3L	10735580	3L_10735580_SNP [dm3] 3L_10742480_SNP [dm6]	A	T	2.303e^-5	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	14334467	3L_14334467_SNP [dm3] 3L_14341367_SNP [dm6]	G	C	2.305e^-5	1	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	10735517	3L_10735517_SNP [dm3] 3L_10742417_SNP [dm6]	A	T	2.544e^-5	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	14427920	3L_14427920_SNP [dm3] 3L_14434820_SNP [dm6]	A	T	2.867e^-5	1	INTRON bbg
X	17398406	X_17398406_SNP [dm3] X_17504373_SNP [dm6]	A	G	2.935e^-5	1	INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19563905	2L_19563905_SNP [dm3] 2L_19563905_SNP [dm6]	T	C	3.154e^-5	1	UPSTREAM CG13078 DOWNSTREAM Tep5 INTERGENIC
3L	14334561	3L_14334561_SNP [dm3] 3L_14341461_SNP [dm6]	T	A	3.550e^-5	1	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	17448920	3L_17448920_SNP [dm3] 3L_17455820_SNP [dm6]	G	A	3.755e^-5	1	UTR_3_PRIME CG18265 DOWNSTREAM CG18265
3L	14065717	3L_14065717_SNP [dm3] 3L_14072617_SNP [dm6]	C	T	3.944e^-5	1	INTRON Pex1	TF binding site mE1_TFBS_HSA
3L	12452953	3L_12452953_SNP [dm3] 3L_12459853_SNP [dm6]	T	C	4.190e^-5	1	INTERGENIC
2R	6083129	2R_6083129_SNP [dm3] 2R_10195624_SNP [dm6]	A	T	4.311e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	13836110	3L_13836110_SNP [dm3] 3L_13843010_SNP [dm6]	G	T	4.356e^-5	1	UTR_5_PRIME CG8750 UPSTREAM CG8757 & 1 other
3L	14428093	3L_14428093_SNP [dm3] 3L_14434993_SNP [dm6]	G	T	4.526e^-5	1	INTRON bbg
2L	9921507	2L_9921507_SNP [dm3] 2L_9921507_SNP [dm6]	C	A	4.540e^-5	1	UPSTREAM CG4592 DOWNSTREAM CG4594 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	13853242	3L_13853242_SNP [dm3] 3L_13860142_SNP [dm6]	A	C	4.598e^-5	1	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
2R	3618495	2R_3618495_SNP [dm3] 2R_7730990_SNP [dm6]	T	A	4.603e^-5	1	INTRON CG18812
2L	11486035	2L_11486035_SNP [dm3] 2L_11486035_SNP [dm6]	G	C	4.661e^-5	1	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19563858	2L_19563858_SNP [dm3] 2L_19563858_SNP [dm6]	G	A	4.720e^-5	1	UPSTREAM CG13078 DOWNSTREAM Tep5 INTERGENIC
2L	19563863	2L_19563863_SNP [dm3] 2L_19563863_SNP [dm6]	C	G	4.720e^-5	1	UPSTREAM CG13078 DOWNSTREAM Tep5 INTERGENIC
3R	10212872	3R_10212872_SNP [dm3] 3R_14387150_SNP [dm6]	T	C	4.781e^-5	1	INTERGENIC
2L	6416649	2L_6416649_SNP [dm3] 2L_6416649_SNP [dm6]	A	G	4.889e^-5	1	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18197354	X_18197354_SNP [dm3] X_18303321_SNP [dm6]	T	C	4.918e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	12539359	3R_12539359_SNP [dm3] 3R_16713637_SNP [dm6]	C	T	4.927e^-5	1	INTRON Ubx	TF binding site BDTNP1_TFBS_dl
2L	578038	2L_578038_DEL [dm3] 2L_578038_DEL [dm6]	AGCAGATA	A	4.983e^-5	1	INTRON Pph13	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16616031	X_16616031_SNP [dm3] X_16721998_SNP [dm6]	T	A	5.338e^-5	1	UPSTREAM CG34325 INTRON CG32572
3L	13853140	3L_13853140_SNP [dm3] 3L_13860040_SNP [dm6]	A	T	5.434e^-5	1	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13854094	3L_13854094_SNP [dm3] 3L_13860994_SNP [dm6]	G	A	5.434e^-5	1	SYNONYMOUS_CODING CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12406730	3L_12406730_SNP [dm3] 3L_12413630_SNP [dm6]	C	G	5.470e^-5	1	NON_SYNONYMOUS_CODING CG32103
3L	13829293	3L_13829293_SNP [dm3] 3L_13836193_SNP [dm6]	G	A	5.683e^-5	1	INTERGENIC
3L	13836141	3L_13836141_SNP [dm3] 3L_13843041_SNP [dm6]	G	A	5.683e^-5	1	UPSTREAM CG8757 & 2 others INTERGENIC
X	4107140	X_4107140_SNP [dm3] X_4213107_SNP [dm6]	C	A	5.895e^-5	1	INTRON CG43288
X	2468354	X_2468354_SNP [dm3] X_2574321_SNP [dm6]	C	A	5.905e^-5	1	INTRON Pdfr
2L	6416646	2L_6416646_SNP [dm3] 2L_6416646_SNP [dm6]	T	C	5.926e^-5	1	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13829341	3L_13829341_SNP [dm3] 3L_13836241_SNP [dm6]	T	G	5.978e^-5	1	INTERGENIC
2L	5263353	2L_5263353_SNP [dm3] 2L_5263353_SNP [dm6]	C	G	6.021e^-5	1	UPSTREAM Cyp4ac1 INTRON tkv
2R	15839546	2R_15839546_SNP [dm3] 2R_19952041_SNP [dm6]	G	T	6.359e^-5	1	DOWNSTREAM CG10822 INTERGENIC
2R	15839547	2R_15839547_SNP [dm3] 2R_19952042_SNP [dm6]	A	T	6.359e^-5	1	DOWNSTREAM CG10822 INTERGENIC
3L	9806621	3L_9806621_SNP [dm3] 3L_9813521_SNP [dm6]	C	T	6.475e^-5	1	UPSTREAM CG43897 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	15839488	2R_15839488_DEL [dm3] 2R_19951983_DEL [dm6]	GC	G	6.524e^-5	1	DOWNSTREAM CG10822 INTERGENIC
2R	7051296	2R_7051296_INS [dm3] 2R_11163791_INS [dm6]	A	AA	6.534e^-5	1	INTRON shn & 1 other
2L	11486454	2L_11486454_SNP [dm3] 2L_11486454_SNP [dm6]	G	A	6.549e^-5	1	NON_SYNONYMOUS_CODING sala UTR_3_PRIME CG43355 DOWNSTREAM CG43355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14065861	3L_14065861_SNP [dm3] 3L_14072761_SNP [dm6]	A	G	6.753e^-5	1	SPLICE_SITE_REGION Pex1 SYNONYMOUS_CODING Pex1
3R	11407887	3R_11407887_SNP [dm3] 3R_15582165_SNP [dm6]	G	A	6.794e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15828549	2R_15828549_SNP [dm3] 2R_19941044_SNP [dm6]	G	T	6.961e^-5	1	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15828563	2R_15828563_SNP [dm3] 2R_19941058_SNP [dm6]	A	G	6.961e^-5	1	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8244833	3L_8244833_SNP [dm3] 3L_8251733_SNP [dm6]	A	T	7.015e^-5	1	INTRON Dscam4
3L	14428101	3L_14428101_SNP [dm3] 3L_14435001_SNP [dm6]	A	G	7.159e^-5	1	INTRON bbg
3L	13230503	3L_13230503_SNP [dm3] 3L_13237403_SNP [dm6]	G	C	7.214e^-5	1	INTRON caps	TF binding site mE1_TFBS_HSA
3R	19569920	3R_19569920_SNP [dm3] 3R_23744198_SNP [dm6]	A	T	7.341e^-5	1	INTRON Hmgcr
3L	15250830	3L_15250830_SNP [dm3] 3L_15257730_SNP [dm6]	T	C	7.649e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12731542	3L_12731542_SNP [dm3] 3L_12738442_SNP [dm6]	C	A	7.782e^-5	1	INTRON Ptp69D
3L	12731545	3L_12731545_SNP [dm3] 3L_12738445_SNP [dm6]	G	T	7.782e^-5	1	INTRON Ptp69D
2R	13814443	2R_13814443_SNP [dm3] 2R_17926938_SNP [dm6]	G	A	7.784e^-5	1	DOWNSTREAM Elk INTERGENIC
X	16893271	X_16893271_DEL [dm3] X_16999238_DEL [dm6]	ATTTTCCACA	A	7.954e^-5	1	INTRON CG45002
3L	16048086	3L_16048086_SNP [dm3] 3L_16054986_SNP [dm6]	A	T	8.073e^-5	1	INTRON Mbs	TF binding site mE1_TFBS_HSA
3L	4516677	3L_4516677_SNP [dm3] 3L_4516677_SNP [dm6]	C	T	8.313e^-5	1	INTRON Tie	TF binding site mE1_TFBS_inv
X	16616033	X_16616033_SNP [dm3] X_16722000_SNP [dm6]	A	T	8.362e^-5	1	UPSTREAM CG34325 INTRON CG32572
3L	13766136	3L_13766136_SNP [dm3] 3L_13773036_SNP [dm6]	G	T	8.653e^-5	1	INTRON bru-3
2R	15839197	2R_15839197_SNP [dm3] 2R_19951692_SNP [dm6]	G	A	8.672e^-5	1	SYNONYMOUS_CODING CG10822
3L	20775821	3L_20775821_SNP [dm3] 3L_20782721_SNP [dm6]	C	T	8.746e^-5	1	INTRON CG11399	TF binding site mE1_TFBS_cad
X	2468353	X_2468353_SNP [dm3] X_2574320_SNP [dm6]	T	C	8.792e^-5	1	INTRON Pdfr
2L	3102052	2L_3102052_SNP [dm3] 2L_3102052_SNP [dm6]	T	C	8.829e^-5	1	INTRON toc
2R	18680136	2R_18680136_SNP [dm3] 2R_22792631_SNP [dm6]	T	C	9.147e^-5	1	INTRON CG42260
2R	3601434	2R_3601434_SNP [dm3] 2R_7713929_SNP [dm6]	C	A	9.183e^-5	1	UPSTREAM CG1946 INTRON CG1942	TF binding site mE1_TFBS_cnc
X	2468332	X_2468332_SNP [dm3] X_2574299_SNP [dm6]	G	A	9.244e^-5	1	INTRON Pdfr
2R	15839481	2R_15839481_SNP [dm3] 2R_19951976_SNP [dm6]	C	G	9.260e^-5	1	DOWNSTREAM CG10822 INTERGENIC
2L	15531329	2L_15531329_SNP [dm3] 2L_15531329_SNP [dm6]	T	C	9.268e^-5	1	INTERGENIC
3L	13856161	3L_13856161_SNP [dm3] 3L_13863061_SNP [dm6]	C	A	9.377e^-5	1	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	1403078	2R_1403078_SNP [dm3] 2R_5515573_SNP [dm6]	T	A	9.439e^-5	1	INTRON CG30438
2L	18464934	2L_18464934_SNP [dm3] 2L_18464934_SNP [dm6]	C	T	9.630e^-5	1	INTRON let-7-C
2L	18464953	2L_18464953_SNP [dm3] 2L_18464953_SNP [dm6]	G	A	9.630e^-5	1	INTRON let-7-C
2L	18464954	2L_18464954_SNP [dm3] 2L_18464954_SNP [dm6]	C	A	9.630e^-5	1	INTRON let-7-C
2R	16600021	2R_16600021_SNP [dm3] 2R_20712516_SNP [dm6]	A	G	9.867e^-5	1	INTRON dpr
2R	9806079	2R_9806079_SNP [dm3] 2R_13918574_SNP [dm6]	A	G	1.021e^-4	1	INTRON shot	TF binding site mE1_TFBS_Trl
2L	1980900	2L_1980900_SNP [dm3] 2L_1980900_SNP [dm6]	A	G	1.053e^-4	1	UPSTREAM CG15362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	7702438	X_7702438_SNP [dm3] X_7808405_SNP [dm6]	A	G	1.067e^-4	1	INTERGENIC
2R	15839526	2R_15839526_SNP [dm3] 2R_19952021_SNP [dm6]	A	G	1.076e^-4	1	DOWNSTREAM CG10822 INTERGENIC
2R	15839563	2R_15839563_SNP [dm3] 2R_19952058_SNP [dm6]	C	T	1.076e^-4	1	DOWNSTREAM CG10822 INTERGENIC
2R	4142583	2R_4142583_SNP [dm3] 2R_8255078_SNP [dm6]	T	C	1.097e^-4	1	SYNONYMOUS_CODING CG14760
3L	13837633	3L_13837633_SNP [dm3] 3L_13844533_SNP [dm6]	T	G	1.102e^-4	1	SYNONYMOUS_CODING Tsp68C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16600018	2R_16600018_SNP [dm3] 2R_20712513_SNP [dm6]	G	A	1.105e^-4	1	INTRON dpr
3L	1251952	3L_1251952_SNP [dm3] 3L_1251952_SNP [dm6]	A	T	1.136e^-4	1	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
2L	4190920	2L_4190920_DEL [dm3] 2L_4190920_DEL [dm6]	TCAT	T	1.144e^-4	1	INTRON CG3714	TF binding site mE1_TFBS_cad
2L	18587040	2L_18587040_SNP [dm3] 2L_18587040_SNP [dm6]	G	A	1.153e^-4	1	INTRON Pde11
3R	11375700	3R_11375700_SNP [dm3] 3R_15549978_SNP [dm6]	A	G	1.157e^-4	1	SYNONYMOUS_CODING CG18516	TF binding site mE1_TFBS_cad
2R	17955118	2R_17955118_SNP [dm3] 2R_22067613_SNP [dm6]	C	G	1.185e^-4	1	SYNONYMOUS_CODING CG44249 UPSTREAM Snp INTRON Snp	TF binding site mE1_TFBS_sens
3L	11424009	3L_11424009_SNP [dm3] 3L_11430909_SNP [dm6]	C	T	1.189e^-4	1	INTERGENIC
3L	13891976	3L_13891976_SNP [dm3] 3L_13898876_SNP [dm6]	T	C	1.214e^-4	1	INTRON dysc
3R	6513473	3R_6513473_SNP [dm3] 3R_10687751_SNP [dm6]	T	A	1.246e^-4	1	INTRON Skeletor	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17152005	3L_17152005_INS [dm3] 3L_17158905_INS [dm6]	A	AGAATA	1.249e^-4	1	INTRON Rbp6
3R	11694878	3R_11694878_SNP [dm3] 3R_15869156_SNP [dm6]	C	T	1.250e^-4	1	INTRON CG31183
3R	27281180	3R_27281180_SNP [dm3] 3R_31455458_SNP [dm6]	A	T	1.257e^-4	1	SPLICE_SITE_REGION Gprk2 INTRON Gprk2	TF binding site mE1_TFBS_cad
3L	11710476	3L_11710476_SNP [dm3] 3L_11717376_SNP [dm6]	T	A	1.259e^-4	1	INTERGENIC
2L	2405438	2L_2405438_SNP [dm3] 2L_2405438_SNP [dm6]	A	G	1.289e^-4	1	INTRON VGlut
3L	21316447	3L_21316447_SNP [dm3] 3L_21323347_SNP [dm6]	C	G	1.291e^-4	1	INTRON Rab26
3R	11383418	3R_11383418_SNP [dm3] 3R_15557696_SNP [dm6]	G	C	1.293e^-4	1	INTERGENIC
3L	14428092	3L_14428092_SNP [dm3] 3L_14434992_SNP [dm6]	T	A	1.301e^-4	1	INTRON bbg
3L	13903454	3L_13903454_SNP [dm3] 3L_13910354_SNP [dm6]	C	G	1.305e^-4	1	INTRON Rgl
3L	13903455	3L_13903455_SNP [dm3] 3L_13910355_SNP [dm6]	T	C	1.305e^-4	1	INTRON Rgl
3L	13903479	3L_13903479_DEL [dm3] 3L_13910379_DEL [dm6]	AAAAGCTTCGTTAACATTTT...	A	1.305e^-4	1	INTRON Rgl
3L	16808196	3L_16808196_SNP [dm3] 3L_16815096_SNP [dm6]	G	T	1.306e^-4	1	INTRON nudC & 1 other
3L	12315445	3L_12315445_SNP [dm3] 3L_12322345_SNP [dm6]	G	A	1.315e^-4	1	INTERGENIC
3R	12143170	3R_12143170_SNP [dm3] 3R_16317448_SNP [dm6]	G	T	1.318e^-4	1	INTRON Sulf1
X	13573338	X_13573338_SNP [dm3] X_13679305_SNP [dm6]	G	C	1.334e^-4	1	SPLICE_SITE_REGION CG12177 INTRON CG12177	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10734120	3L_10734120_SNP [dm3] 3L_10741020_SNP [dm6]	T	A	1.340e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15839110	2R_15839110_SNP [dm3] 2R_19951605_SNP [dm6]	C	A	1.353e^-4	1	SYNONYMOUS_CODING CG10822
2R	15839122	2R_15839122_SNP [dm3] 2R_19951617_SNP [dm6]	G	A	1.353e^-4	1	SYNONYMOUS_CODING CG10822
2R	15839140	2R_15839140_SNP [dm3] 2R_19951635_SNP [dm6]	C	T	1.353e^-4	1	SYNONYMOUS_CODING CG10822
3R	10251472	3R_10251472_SNP [dm3] 3R_14425750_SNP [dm6]	G	A	1.361e^-4	1	INTRON cv-c
3R	12534563	3R_12534563_SNP [dm3] 3R_16708841_SNP [dm6]	T	C	1.380e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_dl
2L	9922005	2L_9922005_SNP [dm3] 2L_9922005_SNP [dm6]	C	G	1.389e^-4	1	DOWNSTREAM CG4594 & 1 other INTRON CG4592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	16812773	X_16812773_SNP [dm3] X_16918740_SNP [dm6]	C	G	1.417e^-4	1	INTRON CG4928
3L	13828995	3L_13828995_SNP [dm3] 3L_13835895_SNP [dm6]	T	C	1.417e^-4	1	INTERGENIC
3L	13903461	3L_13903461_SNP [dm3] 3L_13910361_SNP [dm6]	C	T	1.430e^-4	1	INTRON Rgl
3L	11428157	3L_11428157_SNP [dm3] 3L_11435057_SNP [dm6]	G	A	1.443e^-4	1	SYNONYMOUS_CODING CG6149 UPSTREAM CR44548	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17900594	2R_17900594_DEL [dm3] 2R_22013089_DEL [dm6]	TAT	T	1.460e^-4	1	INTRON CG34370
3L	13828979	3L_13828979_SNP [dm3] 3L_13835879_SNP [dm6]	C	T	1.472e^-4	1	INTERGENIC
2L	11452343	2L_11452343_SNP [dm3] 2L_11452343_SNP [dm6]	A	G	1.490e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11452344	2L_11452344_SNP [dm3] 2L_11452344_SNP [dm6]	G	A	1.490e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20780549	3L_20780549_SNP [dm3] 3L_20787449_SNP [dm6]	A	G	1.497e^-4	1	SYNONYMOUS_CODING CG11396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9313008	3L_9313008_SNP [dm3] 3L_9319908_SNP [dm6]	G	A	1.497e^-4	1	INTERGENIC
2L	6416940	2L_6416940_SNP [dm3] 2L_6416940_SNP [dm6]	G	A	1.503e^-4	1	SYNONYMOUS_CODING Tig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13382482	3R_13382482_DEL [dm3] 3R_17556760_DEL [dm6]	CC	C	1.504e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12452964	3L_12452964_SNP [dm3] 3L_12459864_SNP [dm6]	T	C	1.504e^-4	1	INTERGENIC
2R	18366427	2R_18366427_DEL [dm3] 2R_22478922_DEL [dm6]	ATCTACA	C	1.508e^-4	1	SPLICE_SITE_REGION CG4752 INTRON CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1459966	3L_1459966_DEL [dm3] 3L_1459966_DEL [dm6]	CT	C	1.512e^-4	1	DOWNSTREAM CR44842 INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15838836	2R_15838836_SNP [dm3] 2R_19951331_SNP [dm6]	G	C	1.525e^-4	1	UPSTREAM CG10822 INTERGENIC
3L	13829018	3L_13829018_SNP [dm3] 3L_13835918_SNP [dm6]	C	G	1.529e^-4	1	INTERGENIC
3L	12731540	3L_12731540_SNP [dm3] 3L_12738440_SNP [dm6]	A	C	1.534e^-4	1	INTRON Ptp69D
2R	19876589	2R_19876589_SNP [dm3] 2R_23989066_SNP [dm6]	C	T	1.575e^-4	1	SYNONYMOUS_CODING Pask UPSTREAM Phm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	11486093	2L_11486093_SNP [dm3] 2L_11486093_SNP [dm6]	A	C	1.610e^-4	1	UTR_5_PRIME sala UTR_3_PRIME CG43355 UPSTREAM sala DOWNSTREAM CG43355	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	11995236	3R_11995236_SNP [dm3] 3R_16169514_SNP [dm6]	C	A	1.628e^-4	1	UPSTREAM CR43472 INTRON CG6006	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	884322	3L_884322_SNP [dm3] 3L_884322_SNP [dm6]	C	T	1.635e^-4	1	INTRON CG32479
2R	13050239	2R_13050239_SNP [dm3] 2R_17162734_SNP [dm6]	A	G	1.654e^-4	1	INTERGENIC
3L	13796136	3L_13796136_SNP [dm3] 3L_13803036_SNP [dm6]	G	T	1.660e^-4	1	INTRON bru-3
3L	12417275	3L_12417275_INS [dm3] 3L_12424175_INS [dm6]	G	GG	1.683e^-4	1	SPLICE_SITE_REGION toe INTRON toe	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16994928	3L_16994928_SNP [dm3] 3L_17001828_SNP [dm6]	A	C	1.685e^-4	1	INTRON CG3764
X	2731585	X_2731585_SNP [dm3] X_2837552_SNP [dm6]	A	T	1.685e^-4	1	INTRON kirre
3L	10767662	3L_10767662_SNP [dm3] 3L_10774562_SNP [dm6]	G	A	1.757e^-4	1	INTERGENIC
2L	4263657	2L_4263657_SNP [dm3] 2L_4263657_SNP [dm6]	T	G	1.766e^-4	1	INTERGENIC
2L	14086633	2L_14086633_SNP [dm3] 2L_14086633_SNP [dm6]	C	G	1.769e^-4	1	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_twi
3L	9977087	3L_9977087_SNP [dm3] 3L_9983987_SNP [dm6]	A	T	1.811e^-4	1	INTRON dpr6
2L	1367977	2L_1367977_SNP [dm3] 2L_1367977_SNP [dm6]	T	C	1.845e^-4	1	UPSTREAM CG14346 INTERGENIC	TF binding site mE1_TFBS_inv
2R	13324326	2R_13324326_SNP [dm3] 2R_17436821_SNP [dm6]	C	T	1.849e^-4	1	INTRON EDTP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13438182	X_13438182_SNP [dm3] X_13544149_SNP [dm6]	A	T	1.851e^-4	1	INTRON Cpr12A
3L	2623183	3L_2623183_SNP [dm3] 3L_2623183_SNP [dm6]	T	C	1.860e^-4	1	INTRON Pxn
X	2987420	X_2987420_SNP [dm3] X_3093387_SNP [dm6]	T	A	1.875e^-4	1	INTRON kirre	regulatory region REDfly_CRMs
3R	13382424	3R_13382424_SNP [dm3] 3R_17556702_SNP [dm6]	G	A	1.878e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14164416	X_14164416_SNP [dm3] X_14270383_SNP [dm6]	T	C	1.884e^-4	1	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_cad
3L	10453062	3L_10453062_SNP [dm3] 3L_10459962_SNP [dm6]	A	T	1.901e^-4	1	NON_SYNONYMOUS_CODING Gem3	TF binding site mE1_TFBS_sens
3L	13903460	3L_13903460_SNP [dm3] 3L_13910360_SNP [dm6]	G	A	1.913e^-4	1	INTRON Rgl
3L	13829043	3L_13829043_SNP [dm3] 3L_13835943_SNP [dm6]	C	T	1.915e^-4	1	INTERGENIC
2R	2850862	2R_2850862_SNP [dm3] 2R_6963357_SNP [dm6]	G	A	2.008e^-4	1	INTRON mim & 1 other
3L	16400076	3L_16400076_SNP [dm3] 3L_16406976_SNP [dm6]	C	T	2.022e^-4	1	INTRON fax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13853007	3L_13853007_SNP [dm3] 3L_13859907_SNP [dm6]	A	G	2.030e^-4	1	SYNONYMOUS_CODING Hml DOWNSTREAM CG8745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13853254	3L_13853254_SNP [dm3] 3L_13860154_SNP [dm6]	C	T	2.030e^-4	1	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
3L	11648559	3L_11648559_DEL [dm3] 3L_11655459_DEL [dm6]	TTGGAT	T	2.036e^-4	1	INTRON CG32085
3L	13766491	3L_13766491_SNP [dm3] 3L_13773391_SNP [dm6]	A	G	2.065e^-4	1	INTRON bru-3
3L	13766788	3L_13766788_SNP [dm3] 3L_13773688_SNP [dm6]	T	C	2.065e^-4	1	INTRON bru-3
X	2390974	X_2390974_SNP [dm3] X_2496941_SNP [dm6]	A	C	2.095e^-4	1	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1409441	2L_1409441_SNP [dm3] 2L_1409441_SNP [dm6]	C	T	2.096e^-4	1	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13829027	3L_13829027_SNP [dm3] 3L_13835927_SNP [dm6]	G	T	2.103e^-4	1	INTERGENIC
3L	13829032	3L_13829032_SNP [dm3] 3L_13835932_SNP [dm6]	C	G	2.103e^-4	1	INTERGENIC
3L	13829037	3L_13829037_SNP [dm3] 3L_13835937_SNP [dm6]	T	G	2.103e^-4	1	INTERGENIC
3L	10768102	3L_10768102_SNP [dm3] 3L_10775002_SNP [dm6]	T	A	2.108e^-4	1	INTERGENIC
X	16877173	X_16877173_SNP [dm3] X_16983140_SNP [dm6]	T	C	2.109e^-4	1	INTRON CG45002
3L	16433661	3L_16433661_SNP [dm3] 3L_16440561_SNP [dm6]	T	A	2.113e^-4	1	INTRON CG33158 & 1 other
3L	16433664	3L_16433664_SNP [dm3] 3L_16440564_SNP [dm6]	T	G	2.113e^-4	1	INTRON CG33158 & 1 other
3L	16433665	3L_16433665_SNP [dm3] 3L_16440565_SNP [dm6]	A	G	2.113e^-4	1	INTRON CG33158 & 1 other
3L	11447415	3L_11447415_SNP [dm3] 3L_11454315_SNP [dm6]	G	A	2.145e^-4	1	INTERGENIC
3L	8244832	3L_8244832_SNP [dm3] 3L_8251732_SNP [dm6]	A	G	2.146e^-4	1	INTRON Dscam4
3L	16994677	3L_16994677_SNP [dm3] 3L_17001577_SNP [dm6]	A	T	2.155e^-4	1	UTR_5_PRIME CG3764 INTRON CG3764
2R	15828564	2R_15828564_SNP [dm3] 2R_19941059_SNP [dm6]	A	G	2.165e^-4	1	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12314890	3R_12314890_SNP [dm3] 3R_16489168_SNP [dm6]	A	G	2.166e^-4	1	NON_SYNONYMOUS_CODING Cad89D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26075497	3R_26075497_MNP [dm3] 3R_30249775_MNP [dm6]	GGA	AAT	2.170e^-4	1	NON_SYNONYMOUS_CODING CG34299	TF binding site mE1_TFBS_inv
3L	4637228	3L_4637228_INS [dm3] 3L_4637228_INS [dm6]	C	CGC	2.175e^-4	1	UTR_3_PRIME axo INTRON axo
2L	4265649	2L_4265649_SNP [dm3] 2L_4265649_SNP [dm6]	T	C	2.180e^-4	1	INTERGENIC
2R	18869727	2R_18869727_SNP [dm3] 2R_22982204_SNP [dm6]	G	A	2.193e^-4	1	DOWNSTREAM CG32834 INTERGENIC
2R	20506447	2R_20506447_SNP [dm3] 2R_24618924_SNP [dm6]	C	T	2.208e^-4	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2R	13770692	2R_13770692_SNP [dm3] 2R_17883187_SNP [dm6]	G	A	2.211e^-4	1	UPSTREAM CG30110 INTRON Elk
3L	876467	3L_876467_SNP [dm3] 3L_876467_SNP [dm6]	C	T	2.227e^-4	1	DOWNSTREAM CG13907 INTRON CG32479
3L	1589854	3L_1589854_SNP [dm3] 3L_1589854_SNP [dm6]	G	A	2.239e^-4	1	INTRON CG13917
3L	14068526	3L_14068526_SNP [dm3] 3L_14075426_SNP [dm6]	G	A	2.246e^-4	1	SYNONYMOUS_CODING Pex1 UPSTREAM btl	TF binding site BDTNP1_TFBS_dl
3L	11188869	3L_11188869_SNP [dm3] 3L_11195769_SNP [dm6]	G	T	2.252e^-4	1	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	17808756	3L_17808756_DEL [dm3] 3L_17815656_DEL [dm6]	AAAGCAC	TT	2.257e^-4	1	UTR_3_PRIME Ir75a
2R	6081839	2R_6081839_SNP [dm3] 2R_10194334_SNP [dm6]	C	G	2.294e^-4	1	INTERGENIC
3L	13855072	3L_13855072_SNP [dm3] 3L_13861972_SNP [dm6]	G	C	2.296e^-4	1	SYNONYMOUS_CODING CG8745
2R	16786320	2R_16786320_SNP [dm3] 2R_20898815_SNP [dm6]	G	A	2.314e^-4	1	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
3L	13796111	3L_13796111_SNP [dm3] 3L_13803011_SNP [dm6]	A	G	2.343e^-4	1	INTRON bru-3
3L	15597835	3L_15597835_INS [dm3] 3L_15604735_INS [dm6]	C	CC	2.344e^-4	1	INTRON RhoGAP71E
3R	13382526	3R_13382526_SNP [dm3] 3R_17556804_SNP [dm6]	T	A	2.359e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13382534	3R_13382534_SNP [dm3] 3R_17556812_SNP [dm6]	C	A	2.359e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10733896	3L_10733896_SNP [dm3] 3L_10740796_SNP [dm6]	A	G	2.393e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5409987	2L_5409987_SNP [dm3] 2L_5409987_SNP [dm6]	A	G	2.398e^-4	1	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14929721	3L_14929721_SNP [dm3] 3L_14936621_SNP [dm6]	G	A	2.409e^-4	1	INTRON DCX-EMAP
3L	10843572	3L_10843572_SNP [dm3] 3L_10850472_SNP [dm6]	C	A	2.411e^-4	1	EXON CR45169	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22392305	3R_22392305_SNP [dm3] 3R_26566583_SNP [dm6]	G	C	2.413e^-4	1	SPLICE_SITE_REGION scrib INTRON scrib	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h
3R	13382212	3R_13382212_SNP [dm3] 3R_17556490_SNP [dm6]	G	C	2.414e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Trl
2L	973537	2L_973537_SNP [dm3] 2L_973537_SNP [dm6]	C	T	2.424e^-4	1	INTERGENIC
2R	15841805	2R_15841805_SNP [dm3] 2R_19954300_SNP [dm6]	C	A	2.462e^-4	1	NON_SYNONYMOUS_CODING CG44622
2R	702894	2R_702894_SNP [dm3] 2R_4815389_SNP [dm6]	G	A	2.462e^-4	1	DOWNSTREAM CG17528 INTERGENIC
X	3901568	X_3901568_DEL [dm3] X_4007535_DEL [dm6]	AA	A	2.466e^-4	1	INTERGENIC
2R	1756555	2R_1756555_SNP [dm3] 2R_5869050_SNP [dm6]	A	T	2.474e^-4	1	INTERGENIC
3L	13835565	3L_13835565_SNP [dm3] 3L_13842465_SNP [dm6]	G	C	2.476e^-4	1	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750
3L	13853228	3L_13853228_SNP [dm3] 3L_13860128_SNP [dm6]	C	T	2.476e^-4	1	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
3R	4333313	3R_4333313_SNP [dm3] 3R_8507591_SNP [dm6]	C	T	2.477e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19271482	2R_19271482_SNP [dm3] 2R_23383959_SNP [dm6]	T	C	2.488e^-4	1	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784	TF binding site BDTNP1_TFBS_dl
3L	1184429	3L_1184429_SNP [dm3] 3L_1184429_SNP [dm6]	C	T	2.490e^-4	1	INTERGENIC
3L	13853091	3L_13853091_INS [dm3] 3L_13859991_INS [dm6]	A	AA	2.493e^-4	1	UTR_3_PRIME Hml DOWNSTREAM CG8745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	9967563	3L_9967563_SNP [dm3] 3L_9974463_SNP [dm6]	C	A	2.500e^-4	1	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	13449726	3L_13449726_SNP [dm3] 3L_13456626_SNP [dm6]	T	G	2.507e^-4	1	NON_SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10767567	3L_10767567_SNP [dm3] 3L_10774467_SNP [dm6]	C	A	2.512e^-4	1	INTERGENIC
3R	9999313	3R_9999313_SNP [dm3] 3R_14173591_SNP [dm6]	G	A	2.514e^-4	1	UTR_3_PRIME Dop1R1
3L	13816040	3L_13816040_SNP [dm3] 3L_13822940_SNP [dm6]	T	C	2.519e^-4	1	INTERGENIC
2R	4711374	2R_4711374_SNP [dm3] 2R_8823869_SNP [dm6]	C	A	2.524e^-4	1	INTRON sns
2L	9532172	2L_9532172_SNP [dm3] 2L_9532172_SNP [dm6]	C	T	2.536e^-4	1	INTRON Oatp30B	TF binding site mE1_TFBS_sens
3R	21985047	3R_21985047_SNP [dm3] 3R_26159325_SNP [dm6]	T	A	2.556e^-4	1	INTERGENIC
3R	21985048	3R_21985048_SNP [dm3] 3R_26159326_SNP [dm6]	T	C	2.556e^-4	1	INTERGENIC
3L	13835662	3L_13835662_SNP [dm3] 3L_13842562_SNP [dm6]	T	C	2.574e^-4	1	UTR_3_PRIME CG8750 UPSTREAM CG8757 DOWNSTREAM CG8750
3L	13836564	3L_13836564_SNP [dm3] 3L_13843464_SNP [dm6]	G	C	2.574e^-4	1	UPSTREAM Tsp68C & 1 other INTERGENIC
2R	9163360	2R_9163360_SNP [dm3] 2R_13275855_SNP [dm6]	A	T	2.575e^-4	1	INTRON Dh31-R
3L	13853114	3L_13853114_DEL [dm3] 3L_13860014_DEL [dm6]	GTAGT	G	2.615e^-4	1	DOWNSTREAM CG8745 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	16433667	3L_16433667_DEL [dm3] 3L_16440567_DEL [dm6]	GTCATCATC	G	2.615e^-4	1	INTRON CG33158 & 1 other
3L	13770850	3L_13770850_SNP [dm3] 3L_13777750_SNP [dm6]	T	A	2.663e^-4	1	INTRON bru-3
X	15795621	X_15795621_SNP [dm3] X_15901588_SNP [dm6]	G	A	2.668e^-4	1	SYNONYMOUS_CODING shi
3L	8854776	3L_8854776_SNP [dm3] 3L_8861676_SNP [dm6]	A	G	2.669e^-4	1	INTRON dally
X	20860787	X_20860787_SNP [dm3] X_20989760_SNP [dm6]	C	G	2.684e^-4	1	INTERGENIC
3L	3100297	3L_3100297_SNP [dm3] 3L_3100297_SNP [dm6]	T	G	2.685e^-4	1	INTRON Cht7
3R	9999082	3R_9999082_SNP [dm3] 3R_14173360_SNP [dm6]	T	G	2.707e^-4	1	UTR_3_PRIME Dop1R1
2L	9214141	2L_9214141_SNP [dm3] 2L_9214141_SNP [dm6]	C	T	2.710e^-4	1	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23114372	3R_23114372_SNP [dm3] 3R_27288650_SNP [dm6]	A	T	2.713e^-4	1	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	23114427	3R_23114427_SNP [dm3] 3R_27288705_SNP [dm6]	A	C	2.713e^-4	1	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	23114505	3R_23114505_SNP [dm3] 3R_27288783_SNP [dm6]	C	T	2.713e^-4	1	START_GAINED Hmu UTR_5_PRIME Hmu UPSTREAM bigmax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	10733970	3L_10733970_SNP [dm3] 3L_10740870_SNP [dm6]	T	A	2.722e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1765701	2R_1765701_SNP [dm3] 2R_5878196_SNP [dm6]	T	A	2.738e^-4	1	DOWNSTREAM CG44438 INTERGENIC
3R	7051016	3R_7051016_SNP [dm3] 3R_11225294_SNP [dm6]	G	A	2.738e^-4	1	UPSTREAM scpr-C DOWNSTREAM snoRNA:Me28S-G2017 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	12142983	3R_12142983_SNP [dm3] 3R_16317261_SNP [dm6]	C	T	2.739e^-4	1	INTRON Sulf1
3L	853667	3L_853667_SNP [dm3] 3L_853667_SNP [dm6]	C	T	2.741e^-4	1	SPLICE_SITE_REGION dpr20 DOWNSTREAM CG13890 INTRON dpr20	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12142978	3R_12142978_SNP [dm3] 3R_16317256_SNP [dm6]	A	T	2.742e^-4	1	INTRON Sulf1
3L	4606458	3L_4606458_SNP [dm3] 3L_4606458_SNP [dm6]	G	A	2.744e^-4	1	INTRON Src64B
3R	12143132	3R_12143132_SNP [dm3] 3R_16317410_SNP [dm6]	G	C	2.751e^-4	1	INTRON Sulf1
3R	12143177	3R_12143177_SNP [dm3] 3R_16317455_SNP [dm6]	T	A	2.751e^-4	1	INTRON Sulf1
2L	11486010	2L_11486010_SNP [dm3] 2L_11486010_SNP [dm6]	A	G	2.755e^-4	1	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18419099	X_18419099_DEL [dm3] X_18525066_DEL [dm6]	AAA	A	2.761e^-4	1	INTRON Bx
3L	21380037	3L_21380037_SNP [dm3] 3L_21386937_SNP [dm6]	C	T	2.768e^-4	1	INTRON rgn
X	5256433	X_5256433_SNP [dm3] X_5362400_SNP [dm6]	G	T	2.769e^-4	1	INTRON SK
X	18419103	X_18419103_SNP [dm3] X_18525070_SNP [dm6]	C	T	2.786e^-4	1	INTRON Bx
3R	12142994	3R_12142994_DEL [dm3] 3R_16317272_DEL [dm6]	ACCTCAA	A	2.791e^-4	1	INTRON Sulf1
2R	16595495	2R_16595495_SNP [dm3] 2R_20707990_SNP [dm6]	A	G	2.807e^-4	1	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6083117	2R_6083117_SNP [dm3] 2R_10195612_SNP [dm6]	A	G	2.810e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	13891316	3L_13891316_SNP [dm3] 3L_13898216_SNP [dm6]	A	C	2.816e^-4	1	INTRON dysc
X	2390969	X_2390969_SNP [dm3] X_2496936_SNP [dm6]	A	T	2.830e^-4	1	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13853232	3L_13853232_SNP [dm3] 3L_13860132_SNP [dm6]	C	A	2.845e^-4	1	UTR_3_PRIME CG8745 DOWNSTREAM Hml	TF binding site mE1_TFBS_bab1
2R	18870531	2R_18870531_SNP [dm3] 2R_22983008_SNP [dm6]	A	G	2.851e^-4	1	NON_SYNONYMOUS_CODING CG32834
2R	18870611	2R_18870611_SNP [dm3] 2R_22983088_SNP [dm6]	A	C	2.851e^-4	1	SYNONYMOUS_CODING CG32834
2R	8624374	2R_8624374_SNP [dm3] 2R_12736869_SNP [dm6]	C	T	2.859e^-4	1	INTRON CG42663
3L	11999402	3L_11999402_SNP [dm3] 3L_12006302_SNP [dm6]	A	T	2.867e^-4	1	INTRON CG6928
3L	11999411	3L_11999411_MNP [dm3] 3L_12006311_MNP [dm6]	CTC	GCT	2.867e^-4	1	INTRON CG6928
3L	6568831	3L_6568831_SNP [dm3] 3L_6575731_SNP [dm6]	C	T	2.868e^-4	1	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_kn
2L	11485870	2L_11485870_SNP [dm3] 2L_11485870_SNP [dm6]	A	T	2.872e^-4	1	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12591599	3L_12591599_SNP [dm3] 3L_12598499_SNP [dm6]	A	G	2.872e^-4	1	INTERGENIC
3R	26075141	3R_26075141_SNP [dm3] 3R_30249419_SNP [dm6]	A	G	2.892e^-4	1	UPSTREAM CG34299 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_sens
3L	22885109	3L_22885109_SNP [dm3] 3L_22892009_SNP [dm6]	A	G	2.893e^-4	1	NON_SYNONYMOUS_CODING slif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8309400	2L_8309400_SNP [dm3] 2L_8309400_SNP [dm6]	T	C	2.893e^-4	1	SYNONYMOUS_CODING CG7818 DOWNSTREAM CG7810	TF binding site mE1_TFBS_sens
2R	18451769	2R_18451769_SNP [dm3] 2R_22564264_SNP [dm6]	C	T	2.896e^-4	1	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1140734	X_1140734_SNP [dm3] X_1246701_SNP [dm6]	G	A	2.913e^-4	1	SYNONYMOUS_CODING Atf3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18819800	3L_18819800_SNP [dm3] 3L_18826700_SNP [dm6]	C	T	2.921e^-4	1	SYNONYMOUS_CODING Cat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5591381	2R_5591381_SNP [dm3] 2R_9703876_SNP [dm6]	A	G	2.925e^-4	1	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4096177	2L_4096177_SNP [dm3] 2L_4096177_SNP [dm6]	T	A	2.925e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15815825	3R_15815825_SNP [dm3] 3R_19990103_SNP [dm6]	G	T	2.933e^-4	1	INTRON Hs6st
X	15576053	X_15576053_SNP [dm3] X_15682020_SNP [dm6]	A	G	2.957e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	24639452	3R_24639452_SNP [dm3] 3R_28813730_SNP [dm6]	C	T	2.974e^-4	1	SYNONYMOUS_CODING CG1646
2L	7455935	2L_7455935_SNP [dm3] 2L_7455935_SNP [dm6]	A	G	2.981e^-4	1	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18733257	2R_18733257_INS [dm3] 2R_22845734_INS [dm6]	A	AA	3.004e^-4	1	UPSTREAM CG3649 INTERGENIC
3L	12245270	3L_12245270_SNP [dm3] 3L_12252170_SNP [dm6]	A	C	3.025e^-4	1	INTRON app
X	18946524	X_18946524_SNP [dm3] X_19052491_SNP [dm6]	G	C	3.038e^-4	1	UTR_3_PRIME Diedel3
2R	19871063	2R_19871063_SNP [dm3] 2R_23983540_SNP [dm6]	G	C	3.038e^-4	1	INTRON Sox14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12557797	3R_12557797_SNP [dm3] 3R_16732075_SNP [dm6]	T	C	3.038e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	18197309	X_18197309_SNP [dm3] X_18303276_SNP [dm6]	T	C	3.058e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18968904	2L_18968904_SNP [dm3] 2L_18968904_SNP [dm6]	A	T	3.058e^-4	1	UPSTREAM Tango6 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	2987421	X_2987421_SNP [dm3] X_3093388_SNP [dm6]	A	T	3.075e^-4	1	INTRON kirre	regulatory region REDfly_CRMs
2L	22003019	2L_22003019_SNP [dm3] 2L_22003019_SNP [dm6]	G	A	3.076e^-4	1	INTERGENIC	transposable element FlyBase
3R	23430682	3R_23430682_SNP [dm3] 3R_27604960_SNP [dm6]	T	A	3.107e^-4	1	INTRON dsd	TF binding site mE1_TFBS_cad
X	19614275	X_19614275_SNP [dm3] X_19720242_SNP [dm6]	A	G	3.145e^-4	1	INTRON CG12531
3L	17493227	3L_17493227_SNP [dm3] 3L_17500127_SNP [dm6]	C	A	3.152e^-4	1	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13438179	X_13438179_SNP [dm3] X_13544146_SNP [dm6]	A	G	3.168e^-4	1	INTRON Cpr12A
3L	6008785	3L_6008785_SNP [dm3] 3L_6015685_SNP [dm6]	T	A	3.211e^-4	1	INTRON PVRAP
2R	11580341	2R_11580341_INS [dm3] 2R_15692836_INS [dm6]	A	ATTAGG	3.219e^-4	1	FRAME_SHIFT CG30087 SPLICE_SITE_REGION CG30087 DOWNSTREAM CG30088 EXON CR44372
3L	4984014	3L_4984014_SNP [dm3] 3L_4984014_SNP [dm6]	T	C	3.257e^-4	1	INTRON Con
3R	24501660	3R_24501660_SNP [dm3] 3R_28675938_SNP [dm6]	A	G	3.262e^-4	1	INTRON CG9990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1756660	2R_1756660_SNP [dm3] 2R_5869155_SNP [dm6]	C	T	3.292e^-4	1	INTERGENIC
2R	11112440	2R_11112440_SNP [dm3] 2R_15224935_SNP [dm6]	C	A	3.315e^-4	1	DOWNSTREAM CG8079 INTRON Fs
2R	11112515	2R_11112515_SNP [dm3] 2R_15225010_SNP [dm6]	A	G	3.315e^-4	1	DOWNSTREAM CG8079 INTRON Fs
3R	11392821	3R_11392821_SNP [dm3] 3R_15567099_SNP [dm6]	G	A	3.320e^-4	1	INTERGENIC
2R	16087891	2R_16087891_SNP [dm3] 2R_20200386_SNP [dm6]	C	G	3.335e^-4	1	INTERGENIC
2R	11112460	2R_11112460_INS [dm3] 2R_15224955_INS [dm6]	T	TT	3.350e^-4	1	DOWNSTREAM CG8079 INTRON Fs
3L	5734626	3L_5734626_SNP [dm3] 3L_5741526_SNP [dm6]	G	A	3.364e^-4	1	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3L	4784622	3L_4784622_SNP [dm3] 3L_4784622_SNP [dm6]	C	T	3.372e^-4	1	INTRON RhoGEF64C
3R	12556155	3R_12556155_SNP [dm3] 3R_16730433_SNP [dm6]	G	C	3.396e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5440821	2L_5440821_SNP [dm3] 2L_5440821_SNP [dm6]	T	A	3.405e^-4	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	18814101	3L_18814101_SNP [dm3] 3L_18821001_SNP [dm6]	A	G	3.428e^-4	1	UPSTREAM HipHop & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18814105	3L_18814105_SNP [dm3] 3L_18821005_SNP [dm6]	A	G	3.428e^-4	1	UPSTREAM HipHop & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11596862	3R_11596862_DEL [dm3] 3R_15771140_DEL [dm6]	CAT	A	3.428e^-4	1	INTERGENIC	transposable element FlyBase
3R	11596895	3R_11596895_SNP [dm3] 3R_15771173_SNP [dm6]	C	T	3.428e^-4	1	INTERGENIC	transposable element FlyBase
3R	11596924	3R_11596924_SNP [dm3] 3R_15771202_SNP [dm6]	C	G	3.428e^-4	1	INTERGENIC	transposable element FlyBase
3R	11596932	3R_11596932_SNP [dm3] 3R_15771210_SNP [dm6]	A	G	3.428e^-4	1	INTERGENIC	transposable element FlyBase
3R	11596937	3R_11596937_SNP [dm3] 3R_15771215_SNP [dm6]	C	A	3.428e^-4	1	INTERGENIC	transposable element FlyBase
3L	20781035	3L_20781035_SNP [dm3] 3L_20787935_SNP [dm6]	G	A	3.446e^-4	1	SYNONYMOUS_CODING CG11396 DOWNSTREAM Six4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18680133	2R_18680133_SNP [dm3] 2R_22792628_SNP [dm6]	T	A	3.459e^-4	1	INTRON CG42260
X	3870561	X_3870561_SNP [dm3] X_3976528_SNP [dm6]	C	T	3.465e^-4	1	INTERGENIC
3L	6549664	3L_6549664_SNP [dm3] 3L_6556564_SNP [dm6]	G	T	3.469e^-4	1	INTRON CG18769
2R	9640181	2R_9640181_SNP [dm3] 2R_13752676_SNP [dm6]	A	G	3.477e^-4	1	INTERGENIC
2R	8534563	2R_8534563_SNP [dm3] 2R_12647058_SNP [dm6]	G	C	3.482e^-4	1	INTRON CG8785
3L	13768520	3L_13768520_SNP [dm3] 3L_13775420_SNP [dm6]	A	T	3.495e^-4	1	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	10768104	3L_10768104_SNP [dm3] 3L_10775004_SNP [dm6]	A	G	3.503e^-4	1	INTERGENIC
3L	10768106	3L_10768106_SNP [dm3] 3L_10775006_SNP [dm6]	C	T	3.503e^-4	1	INTERGENIC
3L	13844706	3L_13844706_SNP [dm3] 3L_13851606_SNP [dm6]	A	G	3.511e^-4	1	SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	13844823	3L_13844823_SNP [dm3] 3L_13851723_SNP [dm6]	C	A	3.511e^-4	1	NON_SYNONYMOUS_CODING Hml	TF binding site mE1_TFBS_cad
3L	11409437	3L_11409437_SNP [dm3] 3L_11416337_SNP [dm6]	A	T	3.511e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6568803	3L_6568803_SNP [dm3] 3L_6575703_SNP [dm6]	G	A	3.514e^-4	1	INTRON CG18769 & 1 other
3L	6568876	3L_6568876_DEL [dm3] 3L_6575776_DEL [dm6]	TCCTT	A	3.514e^-4	1	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_kn
2R	16595504	2R_16595504_SNP [dm3] 2R_20707999_SNP [dm6]	A	G	3.522e^-4	1	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8901175	X_8901175_DEL [dm3] X_9007142_DEL [dm6]	CAACAAA	G	3.531e^-4	1	INTRON rdgA & 1 other
2R	20507685	2R_20507685_SNP [dm3] 2R_24620162_SNP [dm6]	C	T	3.535e^-4	1	INTRON CG13594
2R	20509053	2R_20509053_SNP [dm3] 2R_24621530_SNP [dm6]	C	A	3.535e^-4	1	NON_SYNONYMOUS_CODING CG13594	TF binding site mE1_TFBS_chinmo
2R	20509998	2R_20509998_SNP [dm3] 2R_24622475_SNP [dm6]	G	A	3.535e^-4	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20510882	2R_20510882_SNP [dm3] 2R_24623359_SNP [dm6]	C	T	3.535e^-4	1	INTRON CG13594
2R	20513748	2R_20513748_SNP [dm3] 2R_24626225_SNP [dm6]	G	T	3.535e^-4	1	INTRON CG13594
2L	3739177	2L_3739177_SNP [dm3] 2L_3739177_SNP [dm6]	A	G	3.556e^-4	1	INTRON CG10019
3R	11408073	3R_11408073_SNP [dm3] 3R_15582351_SNP [dm6]	G	A	3.557e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14954405	3L_14954405_SNP [dm3] 3L_14961305_SNP [dm6]	G	T	3.568e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1402137	2R_1402137_SNP [dm3] 2R_5514632_SNP [dm6]	G	C	3.571e^-4	1	INTRON CG30438	transposable element FlyBase
3L	10735840	3L_10735840_DEL [dm3] 3L_10742740_DEL [dm6]	AA	A	3.598e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	14113580	2L_14113580_SNP [dm3] 2L_14113580_SNP [dm6]	G	A	3.598e^-4	1	INTERGENIC
3L	11153839	3L_11153839_SNP [dm3] 3L_11160739_SNP [dm6]	T	G	3.599e^-4	1	INTRON CG32082
3L	11635202	3L_11635202_SNP [dm3] 3L_11642102_SNP [dm6]	T	A	3.628e^-4	1	DOWNSTREAM CG6071 INTRON CG32091	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4606675	3L_4606675_MNP [dm3] 3L_4606675_MNP [dm6]	CGC	GTT	3.631e^-4	1	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13824274	3L_13824274_SNP [dm3] 3L_13831174_SNP [dm6]	T	A	3.638e^-4	1	INTERGENIC
X	13322723	X_13322723_SNP [dm3] X_13428690_SNP [dm6]	T	A	3.642e^-4	1	INTERGENIC
2R	13088034	2R_13088034_SNP [dm3] 2R_17200529_SNP [dm6]	G	T	3.644e^-4	1	INTERGENIC
X	18419069	X_18419069_DEL [dm3] X_18525036_DEL [dm6]	GC	G	3.663e^-4	1	INTRON Bx
3R	13382530	3R_13382530_SNP [dm3] 3R_17556808_SNP [dm6]	T	G	3.665e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8930934	2L_8930934_SNP [dm3] 2L_8930934_SNP [dm6]	A	T	3.668e^-4	1	INTRON CG34398	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12559687	3R_12559687_SNP [dm3] 3R_16733965_SNP [dm6]	A	T	3.714e^-4	1	UTR_5_PRIME Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	15576055	X_15576055_DEL [dm3] X_15682022_DEL [dm6]	AA	A	3.723e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2L	4190518	2L_4190518_DEL [dm3] 2L_4190518_DEL [dm6]	ACA	A	3.741e^-4	1	INTRON CG3714	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3548871	3L_3548871_SNP [dm3] 3L_3548871_SNP [dm6]	T	C	3.776e^-4	1	INTRON Eip63E
3L	11188955	3L_11188955_SNP [dm3] 3L_11195855_SNP [dm6]	A	G	3.800e^-4	1	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	8854903	3L_8854903_SNP [dm3] 3L_8861803_SNP [dm6]	T	A	3.827e^-4	1	INTRON dally
3L	10733969	3L_10733969_SNP [dm3] 3L_10740869_SNP [dm6]	A	T	3.858e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11485913	2L_11485913_SNP [dm3] 2L_11485913_SNP [dm6]	T	G	3.863e^-4	1	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485915	2L_11485915_SNP [dm3] 2L_11485915_SNP [dm6]	C	A	3.863e^-4	1	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12243598	3L_12243598_SNP [dm3] 3L_12250498_SNP [dm6]	A	C	3.866e^-4	1	INTRON app
2L	18433350	2L_18433350_INS [dm3] 2L_18433350_INS [dm6]	T	TG	3.893e^-4	1	UPSTREAM CR44488 INTERGENIC
2L	18433364	2L_18433364_SNP [dm3] 2L_18433364_SNP [dm6]	A	G	3.893e^-4	1	UPSTREAM CR44488 INTERGENIC
2L	18433401	2L_18433401_SNP [dm3] 2L_18433401_SNP [dm6]	G	A	3.893e^-4	1	UPSTREAM CR44488 INTERGENIC
3L	16905597	3L_16905597_SNP [dm3] 3L_16912497_SNP [dm6]	G	A	3.898e^-4	1	INTRON Lmpt
X	13438132	X_13438132_INS [dm3] X_13544099_INS [dm6]	A	AA	3.910e^-4	1	INTRON Cpr12A
X	13438136	X_13438136_INS [dm3] X_13544103_INS [dm6]	C	CTTATC	3.910e^-4	1	INTRON Cpr12A
X	13438160	X_13438160_SNP [dm3] X_13544127_SNP [dm6]	A	G	3.910e^-4	1	INTRON Cpr12A
X	18419105	X_18419105_SNP [dm3] X_18525072_SNP [dm6]	C	T	3.927e^-4	1	INTRON Bx
2R	14383229	2R_14383229_SNP [dm3] 2R_18495724_SNP [dm6]	C	G	3.928e^-4	1	INTRON CG30116
3L	11187892	3L_11187892_SNP [dm3] 3L_11194792_SNP [dm6]	T	C	3.940e^-4	1	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	11188004	3L_11188004_SNP [dm3] 3L_11194904_SNP [dm6]	T	C	3.940e^-4	1	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3L	14427665	3L_14427665_SNP [dm3] 3L_14434565_SNP [dm6]	C	G	3.953e^-4	1	INTRON bbg
X	18197287	X_18197287_SNP [dm3] X_18303254_SNP [dm6]	T	A	3.988e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7426244	2L_7426244_INS [dm3] 2L_7426244_INS [dm6]	C	AATAATTATT	4.001e^-4	1	UPSTREAM CG5261 DOWNSTREAM mir-275 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10954090	3L_10954090_SNP [dm3] 3L_10960990_SNP [dm6]	A	G	4.004e^-4	1	UPSTREAM CR45249 DOWNSTREAM CR45248 INTERGENIC
2R	1768765	2R_1768765_SNP [dm3] 2R_5881260_SNP [dm6]	C	T	4.006e^-4	1	UPSTREAM CG44438 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20827345	X_20827345_SNP [dm3] X_20956318_SNP [dm6]	T	G	4.007e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	20827353	X_20827353_SNP [dm3] X_20956326_SNP [dm6]	T	A	4.007e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	20827357	X_20827357_SNP [dm3] X_20956330_SNP [dm6]	T	A	4.007e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
X	20827360	X_20827360_SNP [dm3] X_20956333_SNP [dm6]	A	G	4.007e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17901257	2R_17901257_SNP [dm3] 2R_22013752_SNP [dm6]	A	C	4.016e^-4	1	INTRON CG34370
3R	9999346	3R_9999346_INS [dm3] 3R_14173624_INS [dm6]	C	CC	4.050e^-4	1	UTR_3_PRIME Dop1R1
X	2233010	X_2233010_SNP [dm3] X_2338977_SNP [dm6]	A	G	4.052e^-4	1	INTRON phl
2L	14333505	2L_14333505_SNP [dm3] 2L_14333505_SNP [dm6]	C	G	4.061e^-4	1	SYNONYMOUS_CODING ms_2_34Fe UPSTREAM CG33090
3L	13722948	3L_13722948_SNP [dm3] 3L_13729848_SNP [dm6]	C	G	4.074e^-4	1	INTRON bru-3
3L	13722961	3L_13722961_SNP [dm3] 3L_13729861_SNP [dm6]	A	G	4.074e^-4	1	INTRON bru-3
2L	9444499	2L_9444499_SNP [dm3] 2L_9444499_SNP [dm6]	T	A	4.080e^-4	1	INTRON numb
3L	11999434	3L_11999434_SNP [dm3] 3L_12006334_SNP [dm6]	T	A	4.084e^-4	1	INTRON CG6928
X	18197274	X_18197274_SNP [dm3] X_18303241_SNP [dm6]	G	T	4.088e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16027721	3L_16027721_SNP [dm3] 3L_16034621_SNP [dm6]	T	G	4.101e^-4	1	UPSTREAM CG5895 DOWNSTREAM CG42716 INTRON CG42538	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8352896	X_8352896_SNP [dm3] X_8458863_SNP [dm6]	C	T	4.102e^-4	1	NON_SYNONYMOUS_CODING CG15347	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12624619	3R_12624619_SNP [dm3] 3R_16798897_SNP [dm6]	G	A	4.108e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
3R	11596873	3R_11596873_SNP [dm3] 3R_15771151_SNP [dm6]	T	A	4.108e^-4	1	INTERGENIC	transposable element FlyBase
3R	11596755	3R_11596755_SNP [dm3] 3R_15771033_SNP [dm6]	A	C	4.127e^-4	1	INTERGENIC
3L	4606478	3L_4606478_SNP [dm3] 3L_4606478_SNP [dm6]	C	A	4.161e^-4	1	INTRON Src64B
3L	4606717	3L_4606717_SNP [dm3] 3L_4606717_SNP [dm6]	T	C	4.161e^-4	1	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1756775	2R_1756775_SNP [dm3] 2R_5869270_SNP [dm6]	T	C	4.170e^-4	1	INTERGENIC
2R	1761920	2R_1761920_SNP [dm3] 2R_5874415_SNP [dm6]	T	C	4.170e^-4	1	INTERGENIC
3L	13766163	3L_13766163_INS [dm3] 3L_13773063_INS [dm6]	A	ACTCTTACTTAA...	4.174e^-4	1	INTRON bru-3
2L	9921413	2L_9921413_SNP [dm3] 2L_9921413_SNP [dm6]	A	G	4.215e^-4	1	UTR_3_PRIME CG4594 UPSTREAM CG4592	TF binding site mE1_TFBS_inv
3L	2623142	3L_2623142_SNP [dm3] 3L_2623142_SNP [dm6]	A	G	4.256e^-4	1	INTRON Pxn
2R	18260908	2R_18260908_SNP [dm3] 2R_22373403_SNP [dm6]	C	T	4.261e^-4	1	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	1368013	2L_1368013_SNP [dm3] 2L_1368013_SNP [dm6]	T	A	4.273e^-4	1	UTR_5_PRIME CG14346 UPSTREAM CG14346	TF binding site mE1_TFBS_inv
2R	19676110	2R_19676110_SNP [dm3] 2R_23788587_SNP [dm6]	A	G	4.287e^-4	1	INTRON CG9850
3L	1589869	3L_1589869_SNP [dm3] 3L_1589869_SNP [dm6]	A	G	4.289e^-4	1	INTRON CG13917
3L	13722956	3L_13722956_SNP [dm3] 3L_13729856_SNP [dm6]	C	A	4.294e^-4	1	INTRON bru-3
2L	4264350	2L_4264350_SNP [dm3] 2L_4264350_SNP [dm6]	C	A	4.303e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	853871	3L_853871_SNP [dm3] 3L_853871_SNP [dm6]	C	T	4.306e^-4	1	INTRON dpr20	TF binding site mE1_TFBS_sens
3L	853872	3L_853872_SNP [dm3] 3L_853872_SNP [dm6]	T	G	4.306e^-4	1	INTRON dpr20	TF binding site mE1_TFBS_sens
2L	3102565	2L_3102565_SNP [dm3] 2L_3102565_SNP [dm6]	C	A	4.312e^-4	1	INTRON toc
X	13262211	X_13262211_SNP [dm3] X_13368178_SNP [dm6]	C	G	4.312e^-4	1	UTR_3_PRIME Syt12 UPSTREAM dmrt11E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1029434	3L_1029434_SNP [dm3] 3L_1029434_SNP [dm6]	G	A	4.323e^-4	1	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4600478	3L_4600478_SNP [dm3] 3L_4600478_SNP [dm6]	A	G	4.339e^-4	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10767880	3L_10767880_SNP [dm3] 3L_10774780_SNP [dm6]	G	T	4.354e^-4	1	INTERGENIC
3L	10767919	3L_10767919_SNP [dm3] 3L_10774819_SNP [dm6]	T	C	4.354e^-4	1	INTERGENIC
3L	10767960	3L_10767960_SNP [dm3] 3L_10774860_SNP [dm6]	T	G	4.354e^-4	1	INTERGENIC
2L	5409919	2L_5409919_DEL [dm3] 2L_5409919_DEL [dm6]	CC	C	4.360e^-4	1	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11999436	3L_11999436_SNP [dm3] 3L_12006336_SNP [dm6]	A	G	4.362e^-4	1	INTRON CG6928
2R	20508390	2R_20508390_SNP [dm3] 2R_24620867_SNP [dm6]	G	A	4.375e^-4	1	SYNONYMOUS_CODING CG13594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10552705	3R_10552705_SNP [dm3] 3R_14726983_SNP [dm6]	T	C	4.394e^-4	1	INTRON CG7530
3L	16645316	3L_16645316_SNP [dm3] 3L_16652216_SNP [dm6]	G	A	4.408e^-4	1	INTRON Baldspot
3L	16646067	3L_16646067_SNP [dm3] 3L_16652967_SNP [dm6]	A	T	4.408e^-4	1	UPSTREAM snRNA:U12:73B INTRON Baldspot
3R	25063740	3R_25063740_SNP [dm3] 3R_29238018_SNP [dm6]	A	G	4.408e^-4	1	SYNONYMOUS_CODING CG11951 DOWNSTREAM CG31427	TF binding site mE1_TFBS_cad
X	2338456	X_2338456_SNP [dm3] X_2444423_SNP [dm6]	C	A	4.424e^-4	1	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3L	10513052	3L_10513052_SNP [dm3] 3L_10519952_SNP [dm6]	A	C	4.443e^-4	1	INTRON A2bp1
2R	9364025	2R_9364025_SNP [dm3] 2R_13476520_SNP [dm6]	G	T	4.446e^-4	1	UPSTREAM CG43192 INTRON arr
3R	8418018	3R_8418018_SNP [dm3] 3R_12592296_SNP [dm6]	A	C	4.451e^-4	1	INTRON Octbeta2R
3L	12315479	3L_12315479_SNP [dm3] 3L_12322379_SNP [dm6]	T	C	4.484e^-4	1	INTERGENIC
X	13043216	X_13043216_SNP [dm3] X_13149183_SNP [dm6]	T	C	4.485e^-4	1	INTRON CG32645
X	18197288	X_18197288_SNP [dm3] X_18303255_SNP [dm6]	G	A	4.486e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26183910	3R_26183910_SNP [dm3] 3R_30358188_SNP [dm6]	G	T	4.500e^-4	1	INTRON hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27280097	3R_27280097_SNP [dm3] 3R_31454375_SNP [dm6]	C	A	4.503e^-4	1	INTRON Gprk2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	8032877	3L_8032877_SNP [dm3] 3L_8039777_SNP [dm6]	T	A	4.507e^-4	1	INTRON nmo
3R	9728704	3R_9728704_SNP [dm3] 3R_13902982_SNP [dm6]	C	T	4.511e^-4	1	SYNONYMOUS_CODING ems	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	1762205	2R_1762205_SNP [dm3] 2R_5874700_SNP [dm6]	G	C	4.526e^-4	1	INTERGENIC
2L	3311706	2L_3311706_SNP [dm3] 2L_3311706_SNP [dm6]	T	A	4.532e^-4	1	DOWNSTREAM CG15406 INTRON CG3277	TF binding site mE1_TFBS_cad
3R	5145789	3R_5145789_SNP [dm3] 3R_9320067_SNP [dm6]	G	A	4.555e^-4	1	INTRON CG8861
2R	18756018	2R_18756018_SNP [dm3] 2R_22868495_SNP [dm6]	C	A	4.566e^-4	1	UTR_5_PRIME fd59A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17104173	3L_17104173_SNP [dm3] 3L_17111073_SNP [dm6]	T	G	4.567e^-4	1	INTRON Rbp6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11408006	3R_11408006_DEL [dm3] 3R_15582284_DEL [dm6]	GCC	T	4.590e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18755771	2R_18755771_SNP [dm3] 2R_22868248_SNP [dm6]	T	C	4.591e^-4	1	UTR_5_PRIME fd59A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5440824	2L_5440824_SNP [dm3] 2L_5440824_SNP [dm6]	C	T	4.619e^-4	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	12145214	3L_12145214_SNP [dm3] 3L_12152114_SNP [dm6]	A	C	4.620e^-4	1	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3R	13796692	3R_13796692_SNP [dm3] 3R_17970970_SNP [dm6]	T	C	4.628e^-4	1	INTRON cpo
2L	5518555	2L_5518555_SNP [dm3] 2L_5518555_SNP [dm6]	A	C	4.629e^-4	1	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	8595013	2R_8595013_SNP [dm3] 2R_12707508_SNP [dm6]	G	T	4.638e^-4	1	INTRON CG42663
3R	9998897	3R_9998897_SNP [dm3] 3R_14173175_SNP [dm6]	C	T	4.638e^-4	1	UTR_3_PRIME Dop1R1
2L	5408288	2L_5408288_DEL [dm3] 2L_5408288_DEL [dm6]	TGCTGGGAGGAGT...	T	4.641e^-4	1	INTRON H15	TF binding site mE1_TFBS_cad
2L	17184622	2L_17184622_SNP [dm3] 2L_17184622_SNP [dm6]	A	G	4.642e^-4	1	DOWNSTREAM CG31750 INTERGENIC
3R	26876979	3R_26876979_SNP [dm3] 3R_31051257_SNP [dm6]	C	T	4.650e^-4	1	SYNONYMOUS_CODING Aph-4 UPSTREAM mir-4948	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3597618	3L_3597618_SNP [dm3] 3L_3597618_SNP [dm6]	C	T	4.666e^-4	1	INTRON Eip63E
2L	8311282	2L_8311282_SNP [dm3] 2L_8311282_SNP [dm6]	A	T	4.671e^-4	1	UPSTREAM CG7806 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3L	11863361	3L_11863361_SNP [dm3] 3L_11870261_SNP [dm6]	C	A	4.680e^-4	1	DOWNSTREAM CG5906 INTRON CG44837	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20191563	2R_20191563_SNP [dm3] 2R_24304040_SNP [dm6]	C	T	4.696e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	20191570	2R_20191570_SNP [dm3] 2R_24304047_SNP [dm6]	T	C	4.696e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	3373646	2R_3373646_SNP [dm3] 2R_7486141_SNP [dm6]	A	G	4.703e^-4	1	UTR_5_PRIME wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12405867	2R_12405867_SNP [dm3] 2R_16518362_SNP [dm6]	G	A	4.705e^-4	1	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1433394	2L_1433394_SNP [dm3] 2L_1433394_SNP [dm6]	T	C	4.769e^-4	1	DOWNSTREAM snRNA:U3:22A INTERGENIC
2R	9272093	2R_9272093_SNP [dm3] 2R_13384588_SNP [dm6]	C	T	4.781e^-4	1	INTERGENIC
3L	11635209	3L_11635209_SNP [dm3] 3L_11642109_SNP [dm6]	A	C	4.784e^-4	1	DOWNSTREAM CG6071 INTRON CG32091	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11635210	3L_11635210_SNP [dm3] 3L_11642110_SNP [dm6]	C	T	4.784e^-4	1	DOWNSTREAM CG6071 INTRON CG32091	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13382099	3R_13382099_SNP [dm3] 3R_17556377_SNP [dm6]	T	C	4.819e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
2R	18870234	2R_18870234_SNP [dm3] 2R_22982711_SNP [dm6]	A	G	4.825e^-4	1	NON_SYNONYMOUS_CODING CG32834
2R	18870236	2R_18870236_SNP [dm3] 2R_22982713_SNP [dm6]	T	A	4.825e^-4	1	SYNONYMOUS_CODING CG32834
2R	18870238	2R_18870238_SNP [dm3] 2R_22982715_SNP [dm6]	C	T	4.825e^-4	1	NON_SYNONYMOUS_CODING CG32834
3L	13945259	3L_13945259_SNP [dm3] 3L_13952159_SNP [dm6]	T	A	4.853e^-4	1	INTRON CG32137
3L	853783	3L_853783_SNP [dm3] 3L_853783_SNP [dm6]	A	G	4.856e^-4	1	SYNONYMOUS_CODING dpr20	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6080795	2R_6080795_SNP [dm3] 2R_10193290_SNP [dm6]	A	T	4.864e^-4	1	UPSTREAM KCNQ INTERGENIC
2R	6083068	2R_6083068_SNP [dm3] 2R_10195563_SNP [dm6]	A	G	4.879e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	11363390	3R_11363390_SNP [dm3] 3R_15537668_SNP [dm6]	T	A	4.881e^-4	1	UPSTREAM CG18522 DOWNSTREAM CG18519 INTERGENIC
2R	18890610	2R_18890610_SNP [dm3] 2R_23003087_SNP [dm6]	G	A	4.892e^-4	1	INTRON twi	TF binding site BDTNP1_TFBS_dl
2L	16240466	2L_16240466_INS [dm3] 2L_16240466_INS [dm6]	C	CG	4.899e^-4	1	UTR_3_PRIME CG42817
2R	1385197	2R_1385197_SNP [dm3] 2R_5497692_SNP [dm6]	A	G	4.901e^-4	1	INTRON CG30438
3L	4576516	3L_4576516_DEL [dm3] 3L_4576516_DEL [dm6]	CG	C	4.912e^-4	1	INTRON CG42540
3L	4414132	3L_4414132_SNP [dm3] 3L_4414132_SNP [dm6]	G	A	4.927e^-4	1	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15504058	X_15504058_SNP [dm3] X_15610025_SNP [dm6]	T	C	4.927e^-4	1	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
4	442572	4_442572_SNP [dm3] 4_421946_SNP [dm6]	G	T	4.929e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16598756	2R_16598756_SNP [dm3] 2R_20711251_SNP [dm6]	G	A	4.933e^-4	1	INTRON dpr
3L	16033394	3L_16033394_SNP [dm3] 3L_16040294_SNP [dm6]	C	A	4.933e^-4	1	INTRON th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	8725609	X_8725609_SNP [dm3] X_8831576_SNP [dm6]	G	A	4.939e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8725626	X_8725626_SNP [dm3] X_8831593_SNP [dm6]	A	G	4.939e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6521746	3L_6521746_SNP [dm3] 3L_6528646_SNP [dm6]	C	A	4.942e^-4	1	INTRON sfl
2L	4854974	2L_4854974_SNP [dm3] 2L_4854974_SNP [dm6]	T	A	4.955e^-4	1	INTRON pog	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25071816	3R_25071816_INS [dm3] 3R_29246094_INS [dm6]	T	TT	4.971e^-4	1	INTRON SP1029	TF binding site mE1_TFBS_cad
2L	17165265	2L_17165265_SNP [dm3] 2L_17165265_SNP [dm6]	G	A	4.979e^-4	1	INTRON beat-IIIa & 1 other
2L	5440785	2L_5440785_SNP [dm3] 2L_5440785_SNP [dm6]	T	A	4.997e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11864539	3R_11864539_SNP [dm3] 3R_16038817_SNP [dm6]	G	A	5.007e^-4	1	SYNONYMOUS_CODING pnr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	884490	3L_884490_SNP [dm3] 3L_884490_SNP [dm6]	T	A	5.050e^-4	1	INTRON CG32479
2L	13128510	2L_13128510_SNP [dm3] 2L_13128510_SNP [dm6]	A	T	5.094e^-4	1	INTERGENIC
2L	16244146	2L_16244146_SNP [dm3] 2L_16244146_SNP [dm6]	G	C	5.095e^-4	1	NON_SYNONYMOUS_CODING CG42818
2R	19678102	2R_19678102_SNP [dm3] 2R_23790579_SNP [dm6]	T	A	5.099e^-4	1	DOWNSTREAM CG15800 INTRON CG9850
2R	1568704	2R_1568704_DEL [dm3] 2R_5681199_DEL [dm6]	AACCATTGT	A	5.102e^-4	1	INTRON scaf
3L	12406776	3L_12406776_SNP [dm3] 3L_12413676_SNP [dm6]	C	A	5.116e^-4	1	SYNONYMOUS_CODING CG32103
2R	18869789	2R_18869789_SNP [dm3] 2R_22982266_SNP [dm6]	A	G	5.148e^-4	1	DOWNSTREAM CG32834 INTERGENIC
2L	7426238	2L_7426238_SNP [dm3] 2L_7426238_SNP [dm6]	T	A	5.155e^-4	1	UPSTREAM CG5261 DOWNSTREAM mir-275 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	18197265	X_18197265_SNP [dm3] X_18303232_SNP [dm6]	T	G	5.159e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11407970	3R_11407970_INS [dm3] 3R_15582248_INS [dm6]	T	TATGCAATTACATTT...	5.161e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17900686	2R_17900686_SNP [dm3] 2R_22013181_SNP [dm6]	C	T	5.168e^-4	1	INTRON CG34370
3R	9999293	3R_9999293_SNP [dm3] 3R_14173571_SNP [dm6]	C	T	5.169e^-4	1	UTR_3_PRIME Dop1R1
3R	9542281	3R_9542281_SNP [dm3] 3R_13716559_SNP [dm6]	T	G	5.193e^-4	1	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
3R	12536595	3R_12536595_SNP [dm3] 3R_16710873_SNP [dm6]	A	T	5.215e^-4	1	INTRON Ubx
3R	11408166	3R_11408166_SNP [dm3] 3R_15582444_SNP [dm6]	C	T	5.225e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11408175	3R_11408175_SNP [dm3] 3R_15582453_SNP [dm6]	G	A	5.225e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	8929003	2R_8929003_DEL [dm3] 2R_13041498_DEL [dm6]	ATA	C	5.228e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19407183	2R_19407183_SNP [dm3] 2R_23519660_SNP [dm6]	G	A	5.245e^-4	1	DOWNSTREAM RabX1 INTERGENIC
3L	9865553	3L_9865553_SNP [dm3] 3L_9872453_SNP [dm6]	T	A	5.248e^-4	1	INTERGENIC
2R	1411398	2R_1411398_SNP [dm3] 2R_5523893_SNP [dm6]	C	G	5.250e^-4	1	UPSTREAM CG30438 INTRON CG30438
2L	2301962	2L_2301962_SNP [dm3] 2L_2301962_SNP [dm6]	T	C	5.260e^-4	1	INTERGENIC
3R	7609313	3R_7609313_SNP [dm3] 3R_11783591_SNP [dm6]	A	T	5.265e^-4	1	INTRON CG17360
2L	9729140	2L_9729140_SNP [dm3] 2L_9729140_SNP [dm6]	A	T	5.271e^-4	1	UPSTREAM CG13116 INTRON Nckx30C
2L	21747747	2L_21747747_SNP [dm3] 2L_21747747_SNP [dm6]	C	G	5.290e^-4	1	INTRON step	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1316369	3L_1316369_SNP [dm3] 3L_1316369_SNP [dm6]	T	C	5.302e^-4	1	INTRON CG9153
3L	1318900	3L_1318900_SNP [dm3] 3L_1318900_SNP [dm6]	C	T	5.302e^-4	1	DOWNSTREAM CG9153 INTRON Myo61F
3L	1318905	3L_1318905_SNP [dm3] 3L_1318905_SNP [dm6]	T	C	5.302e^-4	1	DOWNSTREAM CG9153 INTRON Myo61F
X	475801	X_475801_SNP [dm3] X_581768_SNP [dm6]	G	A	5.302e^-4	1	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	11304005	3R_11304005_SNP [dm3] 3R_15478283_SNP [dm6]	T	C	5.327e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11187715	3L_11187715_SNP [dm3] 3L_11194615_SNP [dm6]	G	A	5.347e^-4	1	INTRON GlcAT-P
2L	15278014	2L_15278014_SNP [dm3] 2L_15278014_SNP [dm6]	C	G	5.349e^-4	1	INTRON CR43682
3L	17200106	3L_17200106_SNP [dm3] 3L_17207006_SNP [dm6]	A	G	5.349e^-4	1	INTRON Rbp6
3L	16624007	3L_16624007_SNP [dm3] 3L_16630907_SNP [dm6]	G	A	5.360e^-4	1	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9687154	X_9687154_SNP [dm3] X_9793121_SNP [dm6]	C	A	5.364e^-4	1	INTRON CG32698
2L	2302005	2L_2302005_SNP [dm3] 2L_2302005_SNP [dm6]	C	G	5.388e^-4	1	INTERGENIC
3R	12532775	3R_12532775_SNP [dm3] 3R_16707053_SNP [dm6]	G	C	5.393e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_twi
3R	12533997	3R_12533997_SNP [dm3] 3R_16708275_SNP [dm6]	C	T	5.393e^-4	1	INTRON Ubx
3R	12536158	3R_12536158_SNP [dm3] 3R_16710436_SNP [dm6]	T	C	5.393e^-4	1	INTRON Ubx
3R	12539662	3R_12539662_SNP [dm3] 3R_16713940_SNP [dm6]	A	T	5.393e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12542157	3R_12542157_SNP [dm3] 3R_16716435_SNP [dm6]	T	C	5.393e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16433688	3L_16433688_SNP [dm3] 3L_16440588_SNP [dm6]	A	G	5.399e^-4	1	INTRON CG33158 & 1 other
2R	9998690	2R_9998690_SNP [dm3] 2R_14111185_SNP [dm6]	C	A	5.406e^-4	1	INTRON Prosap
3L	11189451	3L_11189451_SNP [dm3] 3L_11196351_SNP [dm6]	G	A	5.418e^-4	1	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18143035	3L_18143035_SNP [dm3] 3L_18149935_SNP [dm6]	C	T	5.425e^-4	1	INTRON CG7330
3R	7676349	3R_7676349_SNP [dm3] 3R_11850627_SNP [dm6]	G	C	5.428e^-4	1	INTRON CG6959
X	20449969	X_20449969_DEL [dm3] X_20578942_DEL [dm6]	AAGCCCAAGCAGA...	A	5.435e^-4	1	INTERGENIC
3L	14053808	3L_14053808_SNP [dm3] 3L_14060708_SNP [dm6]	T	C	5.456e^-4	1	INTRON CG32138
3R	2867415	3R_2867415_SNP [dm3] 3R_7041693_SNP [dm6]	T	A	5.458e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	4185735	2R_4185735_SNP [dm3] 2R_8298230_SNP [dm6]	G	A	5.460e^-4	1	DOWNSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4265581	2L_4265581_INS [dm3] 2L_4265581_INS [dm6]	A	AACTATG	5.461e^-4	1	INTERGENIC
3R	2867416	3R_2867416_SNP [dm3] 3R_7041694_SNP [dm6]	G	T	5.468e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	13950647	2R_13950647_SNP [dm3] 2R_18063142_SNP [dm6]	G	A	5.477e^-4	1	INTRON CG34386
2R	13950649	2R_13950649_MNP [dm3] 2R_18063144_MNP [dm6]	TTC	AAA	5.477e^-4	1	INTRON CG34386
2R	13950656	2R_13950656_SNP [dm3] 2R_18063151_SNP [dm6]	C	A	5.477e^-4	1	INTRON CG34386
2R	13950657	2R_13950657_SNP [dm3] 2R_18063152_SNP [dm6]	C	T	5.477e^-4	1	INTRON CG34386
2R	13950659	2R_13950659_SNP [dm3] 2R_18063154_SNP [dm6]	G	T	5.477e^-4	1	INTRON CG34386
2L	5440765	2L_5440765_SNP [dm3] 2L_5440765_SNP [dm6]	G	A	5.483e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9863498	3R_9863498_SNP [dm3] 3R_14037776_SNP [dm6]	G	A	5.491e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1768508	2R_1768508_SNP [dm3] 2R_5881003_SNP [dm6]	T	A	5.497e^-4	1	UPSTREAM CG44438 INTERGENIC	TF binding site mE1_TFBS_cad
X	16323338	X_16323338_SNP [dm3] X_16429305_SNP [dm6]	C	T	5.520e^-4	1	SYNONYMOUS_CODING hang	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4606710	3L_4606710_SNP [dm3] 3L_4606710_SNP [dm6]	C	A	5.522e^-4	1	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1425655	2R_1425655_SNP [dm3] 2R_5538150_SNP [dm6]	A	T	5.532e^-4	1	INTRON CG30438	transposable element FlyBase
2L	5062612	2L_5062612_MNP [dm3] 2L_5062612_MNP [dm6]	GGT	TAG	5.532e^-4	1	UPSTREAM qtc DOWNSTREAM CR43820 INTRON qtc	TF binding site mE1_TFBS_HSA
2L	5062619	2L_5062619_DEL [dm3] 2L_5062619_DEL [dm6]	TAACTGTCTTT...	T	5.532e^-4	1	UPSTREAM qtc DOWNSTREAM CR43820 INTRON qtc	TF binding site mE1_TFBS_HSA
2L	5062667	2L_5062667_SNP [dm3] 2L_5062667_SNP [dm6]	A	C	5.532e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5062675	2L_5062675_SNP [dm3] 2L_5062675_SNP [dm6]	C	A	5.532e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5062677	2L_5062677_DEL [dm3] 2L_5062677_DEL [dm6]	TG	T	5.532e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5062681	2L_5062681_SNP [dm3] 2L_5062681_SNP [dm6]	C	G	5.532e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5062685	2L_5062685_SNP [dm3] 2L_5062685_SNP [dm6]	C	T	5.532e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5062687	2L_5062687_SNP [dm3] 2L_5062687_SNP [dm6]	T	A	5.532e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5062699	2L_5062699_SNP [dm3] 2L_5062699_SNP [dm6]	A	T	5.532e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5062701	2L_5062701_DEL [dm3] 2L_5062701_DEL [dm6]	AAACACGTCTG...	A	5.532e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5062716	2L_5062716_SNP [dm3] 2L_5062716_SNP [dm6]	C	A	5.532e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1425652	2R_1425652_SNP [dm3] 2R_5538147_SNP [dm6]	A	T	5.543e^-4	1	INTRON CG30438	transposable element FlyBase
2R	3489757	2R_3489757_SNP [dm3] 2R_7602252_SNP [dm6]	A	G	5.544e^-4	1	INTRON CG1358	TF binding site mE1_TFBS_cad
2R	16597235	2R_16597235_SNP [dm3] 2R_20709730_SNP [dm6]	C	T	5.558e^-4	1	INTRON dpr
2R	16599066	2R_16599066_SNP [dm3] 2R_20711561_SNP [dm6]	G	C	5.558e^-4	1	INTRON dpr
2R	16599149	2R_16599149_SNP [dm3] 2R_20711644_SNP [dm6]	G	A	5.558e^-4	1	INTRON dpr
3R	23114370	3R_23114370_SNP [dm3] 3R_27288648_SNP [dm6]	T	G	5.568e^-4	1	UPSTREAM Hmu & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2R	15839387	2R_15839387_SNP [dm3] 2R_19951882_SNP [dm6]	G	T	5.589e^-4	1	UTR_3_PRIME CG10822
2L	4264345	2L_4264345_SNP [dm3] 2L_4264345_SNP [dm6]	A	T	5.595e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1382355	2R_1382355_DEL [dm3] 2R_5494850_DEL [dm6]	TTAT	T	5.595e^-4	1	CODON_DELETION CG30440
2L	13305435	2L_13305435_SNP [dm3] 2L_13305435_SNP [dm6]	G	A	5.616e^-4	1	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG16825 UPSTREAM CG16825 DOWNSTREAM CG43779	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13305444	2L_13305444_SNP [dm3] 2L_13305444_SNP [dm6]	T	C	5.616e^-4	1	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG16825 UPSTREAM CG16825 DOWNSTREAM CG43779	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26075388	3R_26075388_SNP [dm3] 3R_30249666_SNP [dm6]	A	T	5.622e^-4	1	NON_SYNONYMOUS_CODING CG34299 UPSTREAM tRNA:CR31023	TF binding site mE1_TFBS_inv
2R	1380484	2R_1380484_SNP [dm3] 2R_5492979_SNP [dm6]	A	T	5.625e^-4	1	INTRON CG30440
2R	1762089	2R_1762089_SNP [dm3] 2R_5874584_SNP [dm6]	G	A	5.631e^-4	1	INTERGENIC
2R	5307943	2R_5307943_SNP [dm3] 2R_9420438_SNP [dm6]	A	T	5.633e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	5074820	3L_5074820_SNP [dm3] 3L_5074820_SNP [dm6]	A	C	5.661e^-4	1	INTRON Con
2L	13632552	2L_13632552_SNP [dm3] 2L_13632552_SNP [dm6]	C	A	5.666e^-4	1	DOWNSTREAM CR43410 INTRON kuz
2L	13632565	2L_13632565_SNP [dm3] 2L_13632565_SNP [dm6]	T	C	5.666e^-4	1	DOWNSTREAM CR43410 INTRON kuz
2L	13632570	2L_13632570_SNP [dm3] 2L_13632570_SNP [dm6]	C	G	5.666e^-4	1	DOWNSTREAM CR43410 INTRON kuz
2L	615624	2L_615624_SNP [dm3] 2L_615624_SNP [dm6]	A	T	5.668e^-4	1	INTERGENIC
2L	615633	2L_615633_SNP [dm3] 2L_615633_SNP [dm6]	C	T	5.668e^-4	1	INTERGENIC
2R	13552337	2R_13552337_SNP [dm3] 2R_17664832_SNP [dm6]	G	T	5.668e^-4	1	UTR_5_PRIME CCHa1-R UPSTREAM eIF3-S8
2R	17377270	2R_17377270_SNP [dm3] 2R_21489765_SNP [dm6]	C	A	5.668e^-4	1	INTRON Fkbp14
2R	19535082	2R_19535082_SNP [dm3] 2R_23647559_SNP [dm6]	G	A	5.668e^-4	1	INTRON retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20511024	2R_20511024_SNP [dm3] 2R_24623501_SNP [dm6]	G	T	5.668e^-4	1	INTRON CG13594	TF binding site BDTNP1_TFBS_dl
2R	20511060	2R_20511060_SNP [dm3] 2R_24623537_SNP [dm6]	A	G	5.668e^-4	1	INTRON CG13594	TF binding site BDTNP1_TFBS_dl
2R	7119477	2R_7119477_SNP [dm3] 2R_11231972_SNP [dm6]	C	T	5.668e^-4	1	INTRON metro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	7120307	2R_7120307_SNP [dm3] 2R_11232802_SNP [dm6]	C	G	5.668e^-4	1	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	6138003	3L_6138003_SNP [dm3] 3L_6144903_SNP [dm6]	A	C	5.668e^-4	1	UTR_5_PRIME Lcp65Ac DOWNSTREAM Lcp65Ad
3L	6138004	3L_6138004_SNP [dm3] 3L_6144904_SNP [dm6]	G	A	5.668e^-4	1	UTR_5_PRIME Lcp65Ac DOWNSTREAM Lcp65Ad
3R	11942308	3R_11942308_SNP [dm3] 3R_16116586_SNP [dm6]	G	A	5.669e^-4	1	INTRON Sb
2L	4008347	2L_4008347_SNP [dm3] 2L_4008347_SNP [dm6]	G	A	5.670e^-4	1	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
3L	16027714	3L_16027714_SNP [dm3] 3L_16034614_SNP [dm6]	A	G	5.676e^-4	1	UPSTREAM CG5895 DOWNSTREAM CG42716 INTRON CG42538	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	15421977	X_15421977_SNP [dm3] X_15527944_SNP [dm6]	G	A	5.685e^-4	1	INTRON Ac13E
3L	8748379	3L_8748379_SNP [dm3] 3L_8755279_SNP [dm6]	C	G	5.689e^-4	1	UPSTREAM CG6576 INTRON Fhos
2R	16024722	2R_16024722_SNP [dm3] 2R_20137217_SNP [dm6]	A	G	5.689e^-4	1	UPSTREAM CR44635 & 2 others INTERGENIC
3R	17828478	3R_17828478_SNP [dm3] 3R_22002756_SNP [dm6]	T	G	5.692e^-4	1	INTRON Eip93F
2L	10730034	2L_10730034_SNP [dm3] 2L_10730034_SNP [dm6]	C	T	5.705e^-4	1	SYNONYMOUS_CODING CG6443 UPSTREAM CG17118	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16187225	2L_16187225_SNP [dm3] 2L_16187225_SNP [dm6]	A	G	5.709e^-4	1	INTRON Ca-alpha1D	TF binding site mE1_TFBS_kn
X	3898783	X_3898783_SNP [dm3] X_4004750_SNP [dm6]	G	C	5.763e^-4	1	INTERGENIC	insulator Insulator_Class_II.mE01
3L	3953607	3L_3953607_SNP [dm3] 3L_3953607_SNP [dm6]	C	G	5.764e^-4	1	DOWNSTREAM CG12605 INTERGENIC
3L	7383576	3L_7383576_SNP [dm3] 3L_7390476_SNP [dm6]	C	T	5.768e^-4	1	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
2R	1389204	2R_1389204_SNP [dm3] 2R_5501699_SNP [dm6]	C	T	5.771e^-4	1	INTRON CG30438	transposable element FlyBase
3L	11543064	3L_11543064_SNP [dm3] 3L_11549964_SNP [dm6]	T	G	5.782e^-4	1	INTRON Mob2
2R	6356831	2R_6356831_SNP [dm3] 2R_10469326_SNP [dm6]	C	T	5.787e^-4	1	SYNONYMOUS_CODING CG11777 UPSTREAM Caf1-105 DOWNSTREAM whd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10767644	3L_10767644_SNP [dm3] 3L_10774544_SNP [dm6]	A	C	5.809e^-4	1	INTERGENIC
2L	4130293	2L_4130293_SNP [dm3] 2L_4130293_SNP [dm6]	A	G	5.828e^-4	1	INTERGENIC
2R	10857816	2R_10857816_SNP [dm3] 2R_14970311_SNP [dm6]	T	C	5.828e^-4	1	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16277413	3R_16277413_SNP [dm3] 3R_20451691_SNP [dm6]	G	A	5.828e^-4	1	INTRON Gfrl
3R	16277448	3R_16277448_SNP [dm3] 3R_20451726_SNP [dm6]	C	A	5.828e^-4	1	INTRON Gfrl
X	12443760	X_12443760_SNP [dm3] X_12549727_SNP [dm6]	C	T	5.828e^-4	1	INTRON CG43921
X	20826251	X_20826251_SNP [dm3] X_20955224_SNP [dm6]	C	T	5.828e^-4	1	INTERGENIC
X	20826352	X_20826352_SNP [dm3] X_20955325_SNP [dm6]	A	G	5.828e^-4	1	INTERGENIC
X	20827174	X_20827174_SNP [dm3] X_20956147_SNP [dm6]	T	C	5.828e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20827329	X_20827329_INS [dm3] X_20956302_INS [dm6]	G	GG	5.828e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	18902521	2L_18902521_SNP [dm3] 2L_18902521_SNP [dm6]	A	G	5.844e^-4	1	INTERGENIC
X	7880291	X_7880291_DEL [dm3] X_7986258_DEL [dm6]	ACA	A	5.846e^-4	1	UTR_3_PRIME sn DOWNSTREAM sn
3R	11363394	3R_11363394_SNP [dm3] 3R_15537672_SNP [dm6]	G	A	5.856e^-4	1	UPSTREAM CG18522 DOWNSTREAM CG18519 INTERGENIC
3R	11363395	3R_11363395_SNP [dm3] 3R_15537673_SNP [dm6]	A	G	5.856e^-4	1	UPSTREAM CG18522 DOWNSTREAM CG18519 INTERGENIC
3R	11363367	3R_11363367_DEL [dm3] 3R_15537645_DEL [dm6]	ATGTA	A	5.858e^-4	1	UPSTREAM CG18522 DOWNSTREAM CG18519 INTERGENIC
2R	19871005	2R_19871005_SNP [dm3] 2R_23983482_SNP [dm6]	G	C	5.912e^-4	1	INTRON Sox14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19871035	2R_19871035_SNP [dm3] 2R_23983512_SNP [dm6]	A	G	5.912e^-4	1	INTRON Sox14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1427271	2R_1427271_DEL [dm3] 2R_5539766_DEL [dm6]	GTG	AA	5.915e^-4	1	INTRON CG30438
2R	6083096	2R_6083096_SNP [dm3] 2R_10195591_SNP [dm6]	T	A	5.931e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	6083098	2R_6083098_INS [dm3] 2R_10195593_INS [dm6]	A	ATAATAATATATA...	5.931e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	16866311	2R_16866311_SNP [dm3] 2R_20978806_SNP [dm6]	G	T	5.940e^-4	1	UTR_5_PRIME CG15650 UPSTREAM CG9313 & 1 other
3L	14324886	3L_14324886_SNP [dm3] 3L_14331786_SNP [dm6]	G	T	5.942e^-4	1	INTRON fz
3L	14585246	3L_14585246_SNP [dm3] 3L_14592146_SNP [dm6]	T	C	5.954e^-4	1	INTRON HGTX	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12191688	2L_12191688_SNP [dm3] 2L_12191688_SNP [dm6]	G	T	5.955e^-4	1	INTRON aret
2L	12191689	2L_12191689_SNP [dm3] 2L_12191689_SNP [dm6]	T	G	5.955e^-4	1	INTRON aret
3R	27471667	3R_27471667_SNP [dm3] 3R_31645945_SNP [dm6]	C	G	5.971e^-4	1	INTRON kek6
2L	11658589	2L_11658589_SNP [dm3] 2L_11658589_SNP [dm6]	A	G	5.983e^-4	1	DOWNSTREAM CG43167 INTERGENIC
2R	20504699	2R_20504699_DEL [dm3] 2R_24617176_DEL [dm6]	TCGTCCTTT	T	5.990e^-4	1	INTRON CG13594
2L	4261941	2L_4261941_SNP [dm3] 2L_4261941_SNP [dm6]	A	C	5.991e^-4	1	UPSTREAM CR44080 INTERGENIC
2L	4261948	2L_4261948_SNP [dm3] 2L_4261948_SNP [dm6]	G	A	5.991e^-4	1	UPSTREAM CR44080 INTERGENIC
3R	19136999	3R_19136999_SNP [dm3] 3R_23311277_SNP [dm6]	C	G	5.991e^-4	1	INTRON pnt
3L	8696327	3L_8696327_SNP [dm3] 3L_8703227_SNP [dm6]	T	A	5.992e^-4	1	INTERGENIC
2R	1403829	2R_1403829_SNP [dm3] 2R_5516324_SNP [dm6]	A	G	6.018e^-4	1	INTRON CG30438
2R	18856368	2R_18856368_SNP [dm3] 2R_22968845_SNP [dm6]	T	G	6.022e^-4	1	INTERGENIC
3L	11457754	3L_11457754_SNP [dm3] 3L_11464654_SNP [dm6]	G	A	6.039e^-4	1	SYNONYMOUS_CODING CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3344329	X_3344329_DEL [dm3] X_3450296_DEL [dm6]	ATGTA	A	6.047e^-4	1	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	4185947	2R_4185947_SNP [dm3] 2R_8298442_SNP [dm6]	G	A	6.055e^-4	1	DOWNSTREAM mir-280 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17149904	3L_17149904_SNP [dm3] 3L_17156804_SNP [dm6]	A	T	6.064e^-4	1	INTRON Rbp6
X	14972224	X_14972224_SNP [dm3] X_15078191_SNP [dm6]	A	G	6.089e^-4	1	EXON CR44662
2R	19872512	2R_19872512_SNP [dm3] 2R_23984989_SNP [dm6]	A	G	6.103e^-4	1	SYNONYMOUS_CODING Sox14 DOWNSTREAM Phm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12528602	3L_12528602_SNP [dm3] 3L_12535502_SNP [dm6]	C	T	6.127e^-4	1	UTR_3_PRIME CG10688 & 1 other	TF binding site mE1_TFBS_cad
2R	16598672	2R_16598672_SNP [dm3] 2R_20711167_SNP [dm6]	A	T	6.148e^-4	1	INTRON dpr
3L	14066585	3L_14066585_SNP [dm3] 3L_14073485_SNP [dm6]	A	G	6.149e^-4	1	SYNONYMOUS_CODING Pex1	TF binding site mE1_TFBS_sens
2L	4192065	2L_4192065_SNP [dm3] 2L_4192065_SNP [dm6]	C	T	6.156e^-4	1	INTRON CG3714
3L	13892014	3L_13892014_SNP [dm3] 3L_13898914_SNP [dm6]	A	G	6.157e^-4	1	INTRON dysc
2R	18649209	2R_18649209_SNP [dm3] 2R_22761704_SNP [dm6]	C	T	6.173e^-4	1	INTRON CG42260	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4774360	2R_4774360_SNP [dm3] 2R_8886855_SNP [dm6]	C	T	6.179e^-4	1	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18452463	2R_18452463_SNP [dm3] 2R_22564958_SNP [dm6]	C	T	6.182e^-4	1	SYNONYMOUS_CODING dnr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12670380	3R_12670380_SNP [dm3] 3R_16844658_SNP [dm6]	A	T	6.184e^-4	1	DOWNSTREAM iab-8 INTRON iab-8
2R	1374403	2R_1374403_SNP [dm3] 2R_5486898_SNP [dm6]	C	T	6.185e^-4	1	INTRON CG30440	transposable element FlyBase
2L	11485847	2L_11485847_SNP [dm3] 2L_11485847_SNP [dm6]	G	A	6.217e^-4	1	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1318899	3L_1318899_SNP [dm3] 3L_1318899_SNP [dm6]	T	C	6.223e^-4	1	DOWNSTREAM CG9153 INTRON Myo61F
3R	11407991	3R_11407991_SNP [dm3] 3R_15582269_SNP [dm6]	A	T	6.239e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	6570140	2L_6570140_SNP [dm3] 2L_6570140_SNP [dm6]	G	T	6.240e^-4	1	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10161706	2R_10161706_SNP [dm3] 2R_14274201_SNP [dm6]	A	C	6.247e^-4	1	SYNONYMOUS_CODING conv
2L	3848808	2L_3848808_SNP [dm3] 2L_3848808_SNP [dm6]	T	G	6.248e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	6549553	3L_6549553_DEL [dm3] 3L_6556453_DEL [dm6]	TT	T	6.261e^-4	1	INTRON CG18769
3R	19569921	3R_19569921_SNP [dm3] 3R_23744199_SNP [dm6]	T	G	6.280e^-4	1	INTRON Hmgcr
X	14762093	X_14762093_DEL [dm3] X_14868060_DEL [dm6]	TTGAC	G	6.316e^-4	1	INTRON Flo2 & 1 other
3L	3112160	3L_3112160_SNP [dm3] 3L_3112160_SNP [dm6]	C	T	6.317e^-4	1	NON_SYNONYMOUS_CODING CG45067 UPSTREAM CG45066
2R	16041544	2R_16041544_SNP [dm3] 2R_20154039_SNP [dm6]	A	G	6.325e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7626806	3R_7626806_SNP [dm3] 3R_11801084_SNP [dm6]	A	T	6.328e^-4	1	INTRON ClC-a	TF binding site mE1_TFBS_cad
X	16718347	X_16718347_SNP [dm3] X_16824314_SNP [dm6]	A	G	6.329e^-4	1	INTRON CG4829
3L	882805	3L_882805_SNP [dm3] 3L_882805_SNP [dm6]	G	A	6.330e^-4	1	UPSTREAM CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8725616	X_8725616_SNP [dm3] X_8831583_SNP [dm6]	C	T	6.333e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18921395	2L_18921395_SNP [dm3] 2L_18921395_SNP [dm6]	T	C	6.334e^-4	1	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	14722198	2L_14722198_INS [dm3] 2L_14722198_INS [dm6]	T	TT	6.336e^-4	1	INTERGENIC
2L	4263215	2L_4263215_SNP [dm3] 2L_4263215_SNP [dm6]	C	T	6.341e^-4	1	INTERGENIC
2L	4263476	2L_4263476_SNP [dm3] 2L_4263476_SNP [dm6]	C	T	6.341e^-4	1	INTERGENIC
2L	4263656	2L_4263656_SNP [dm3] 2L_4263656_SNP [dm6]	G	A	6.341e^-4	1	INTERGENIC
2L	4264261	2L_4264261_SNP [dm3] 2L_4264261_SNP [dm6]	C	A	6.341e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4264301	2L_4264301_SNP [dm3] 2L_4264301_SNP [dm6]	T	A	6.341e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4265038	2L_4265038_SNP [dm3] 2L_4265038_SNP [dm6]	A	T	6.341e^-4	1	INTERGENIC
2L	4265064	2L_4265064_SNP [dm3] 2L_4265064_SNP [dm6]	T	A	6.341e^-4	1	INTERGENIC
2L	4266270	2L_4266270_SNP [dm3] 2L_4266270_SNP [dm6]	T	C	6.341e^-4	1	INTERGENIC
2L	7068846	2L_7068846_SNP [dm3] 2L_7068846_SNP [dm6]	T	G	6.341e^-4	1	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
X	2391146	X_2391146_SNP [dm3] X_2497113_SNP [dm6]	C	T	6.350e^-4	1	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6632749	2L_6632749_SNP [dm3] 2L_6632749_SNP [dm6]	A	G	6.375e^-4	1	UPSTREAM Oatp26F DOWNSTREAM CG31635 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15744354	2R_15744354_SNP [dm3] 2R_19856849_SNP [dm6]	T	C	6.382e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24541315	3R_24541315_SNP [dm3] 3R_28715593_SNP [dm6]	T	C	6.385e^-4	1	SPLICE_SITE_REGION htt INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	5062695	2L_5062695_SNP [dm3] 2L_5062695_SNP [dm6]	G	A	6.387e^-4	1	UPSTREAM qtc INTRON qtc EXON CR43820	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6904448	3R_6904448_SNP [dm3] 3R_11078726_SNP [dm6]	G	C	6.409e^-4	1	INTERGENIC
3L	11387608	3L_11387608_SNP [dm3] 3L_11394508_SNP [dm6]	T	G	6.411e^-4	1	UPSTREAM CG11726 INTERGENIC
3R	11408046	3R_11408046_SNP [dm3] 3R_15582324_SNP [dm6]	T	C	6.418e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11408066	3R_11408066_DEL [dm3] 3R_15582344_DEL [dm6]	AT	A	6.418e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11408094	3R_11408094_DEL [dm3] 3R_15582372_DEL [dm6]	TGCAGCATAT	T	6.418e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11408112	3R_11408112_SNP [dm3] 3R_15582390_SNP [dm6]	C	T	6.418e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11408130	3R_11408130_SNP [dm3] 3R_15582408_SNP [dm6]	T	A	6.418e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18356897	2R_18356897_SNP [dm3] 2R_22469392_SNP [dm6]	G	C	6.422e^-4	1	INTRON CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	884442	3L_884442_SNP [dm3] 3L_884442_SNP [dm6]	C	T	6.430e^-4	1	INTRON CG32479
2R	8624373	2R_8624373_SNP [dm3] 2R_12736868_SNP [dm6]	C	G	6.432e^-4	1	INTRON CG42663
2R	8624377	2R_8624377_SNP [dm3] 2R_12736872_SNP [dm6]	C	A	6.432e^-4	1	INTRON CG42663
3L	22768357	3L_22768357_SNP [dm3] 3L_22775257_SNP [dm6]	A	G	6.440e^-4	1	INTRON SPoCk	TF binding site mE1_TFBS_inv
X	3014817	X_3014817_SNP [dm3] X_3120784_SNP [dm6]	C	T	6.442e^-4	1	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3367906	X_3367906_DEL [dm3] X_3473873_DEL [dm6]	CTACA	C	6.453e^-4	1	UPSTREAM CG12206 INTRON CR44999 & 1 other
2R	19877768	2R_19877768_SNP [dm3] 2R_23990245_SNP [dm6]	C	T	6.467e^-4	1	SYNONYMOUS_CODING Pask	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5733018	3L_5733018_SNP [dm3] 3L_5739918_SNP [dm6]	T	G	6.468e^-4	1	INTRON sif
3L	16044488	3L_16044488_SNP [dm3] 3L_16051388_SNP [dm6]	A	G	6.471e^-4	1	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1186922	3L_1186922_SNP [dm3] 3L_1186922_SNP [dm6]	C	T	6.483e^-4	1	INTERGENIC
3L	11424026	3L_11424026_SNP [dm3] 3L_11430926_SNP [dm6]	T	A	6.506e^-4	1	INTERGENIC
X	3743095	X_3743095_SNP [dm3] X_3849062_SNP [dm6]	C	A	6.521e^-4	1	INTRON ec	TF binding site BDTNP1_TFBS_dl
X	3743213	X_3743213_SNP [dm3] X_3849180_SNP [dm6]	C	G	6.521e^-4	1	INTRON ec
3R	13382184	3R_13382184_SNP [dm3] 3R_17556462_SNP [dm6]	C	T	6.522e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Trl
X	9687157	X_9687157_SNP [dm3] X_9793124_SNP [dm6]	T	C	6.524e^-4	1	INTRON CG32698
2L	17192834	2L_17192834_SNP [dm3] 2L_17192834_SNP [dm6]	G	T	6.542e^-4	1	INTRON beat-IIIc
2R	15838759	2R_15838759_SNP [dm3] 2R_19951254_SNP [dm6]	A	T	6.554e^-4	1	UPSTREAM CG10822 INTERGENIC
X	8503754	X_8503754_SNP [dm3] X_8609721_SNP [dm6]	A	G	6.555e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	10513660	3L_10513660_SNP [dm3] 3L_10520560_SNP [dm6]	C	A	6.577e^-4	1	INTRON A2bp1
3L	9797422	3L_9797422_SNP [dm3] 3L_9804322_SNP [dm6]	A	G	6.583e^-4	1	UPSTREAM Ilp4 INTRON CG32052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3386083	2R_3386083_SNP [dm3] 2R_7498578_SNP [dm6]	C	T	6.587e^-4	1	SYNONYMOUS_CODING dpa	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11580831	2R_11580831_SNP [dm3] 2R_15693326_SNP [dm6]	A	G	6.589e^-4	1	UPSTREAM CG33460 INTRON CG30087 EXON CR44372	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
X	3939192	X_3939192_SNP [dm3] X_4045159_SNP [dm6]	A	G	6.590e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13305938	2L_13305938_SNP [dm3] 2L_13305938_SNP [dm6]	G	T	6.593e^-4	1	START_GAINED CG16825 UTR_5_PRIME CG16825 UTR_3_PRIME CG43779 INTRON CG43778
3L	12609152	3L_12609152_SNP [dm3] 3L_12616052_SNP [dm6]	T	G	6.614e^-4	1	INTRON caup	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22887606	3R_22887606_SNP [dm3] 3R_27061884_SNP [dm6]	A	G	6.615e^-4	1	UPSTREAM CG34292 INTRON Nep5
3R	22887607	3R_22887607_SNP [dm3] 3R_27061885_SNP [dm6]	T	A	6.615e^-4	1	UPSTREAM CG34292 INTRON Nep5
3L	14015578	3L_14015578_SNP [dm3] 3L_14022478_SNP [dm6]	G	C	6.627e^-4	1	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17626074	3L_17626074_SNP [dm3] 3L_17632974_SNP [dm6]	G	A	6.629e^-4	1	UPSTREAM CG7497 DOWNSTREAM CR44567 & 1 other INTERGENIC
X	16262958	X_16262958_INS [dm3] X_16368925_INS [dm6]	C	CGGACATGGCTGAATTGAAT...	6.630e^-4	1	UTR_3_PRIME nonA DOWNSTREAM nonA INTRON nonA
2R	16868624	2R_16868624_SNP [dm3] 2R_20981119_SNP [dm6]	C	T	6.634e^-4	1	INTRON CG9313	TF binding site mE1_TFBS_cad
2L	9532265	2L_9532265_SNP [dm3] 2L_9532265_SNP [dm6]	C	T	6.641e^-4	1	INTRON Oatp30B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3127319	X_3127319_SNP [dm3] X_3233286_SNP [dm6]	C	A	6.652e^-4	1	INTRON dnc
2R	18356895	2R_18356895_SNP [dm3] 2R_22469390_SNP [dm6]	G	A	6.664e^-4	1	INTRON CG10384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	710261	2R_710261_SNP [dm3] 2R_4822756_SNP [dm6]	C	T	6.668e^-4	1	INTRON CG17528	transposable element FlyBase
3L	10270665	3L_10270665_SNP [dm3] 3L_10277565_SNP [dm6]	T	A	6.681e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	969959	2R_969959_SNP [dm3] 2R_5082454_SNP [dm6]	C	T	6.690e^-4	1	UPSTREAM CR43360 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8306058	2L_8306058_SNP [dm3] 2L_8306058_SNP [dm6]	G	A	6.695e^-4	1	NON_SYNONYMOUS_CODING CG7840 DOWNSTREAM Scgalpha & 1 other	TF binding site mE1_TFBS_sens
3L	1076620	3L_1076620_SNP [dm3] 3L_1076620_SNP [dm6]	G	C	6.714e^-4	1	INTRON bab1
X	4107147	X_4107147_SNP [dm3] X_4213114_SNP [dm6]	T	C	6.723e^-4	1	INTRON CG43288
3R	24537422	3R_24537422_SNP [dm3] 3R_28711700_SNP [dm6]	G	C	6.740e^-4	1	INTRON htt
3L	884605	3L_884605_SNP [dm3] 3L_884605_SNP [dm6]	C	T	6.757e^-4	1	INTRON CG32479
2L	4133428	2L_4133428_SNP [dm3] 2L_4133428_SNP [dm6]	C	G	6.775e^-4	1	INTERGENIC
X	20555483	X_20555483_SNP [dm3] X_20684456_SNP [dm6]	G	A	6.775e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	17301750	3L_17301750_SNP [dm3] 3L_17308650_SNP [dm6]	G	A	6.786e^-4	1	INTERGENIC
3R	11363377	3R_11363377_SNP [dm3] 3R_15537655_SNP [dm6]	G	T	6.789e^-4	1	UPSTREAM CG18522 DOWNSTREAM CG18519 INTERGENIC
3R	11363385	3R_11363385_SNP [dm3] 3R_15537663_SNP [dm6]	T	C	6.789e^-4	1	UPSTREAM CG18522 DOWNSTREAM CG18519 INTERGENIC
3L	8696265	3L_8696265_INS [dm3] 3L_8703165_INS [dm6]	A	AA	6.794e^-4	1	INTERGENIC
2R	1069824	2R_1069824_SNP [dm3] 2R_5182319_SNP [dm6]	T	C	6.809e^-4	1	INTRON Nipped-A	transposable element FlyBase
3L	11635802	3L_11635802_DEL [dm3] 3L_11642702_DEL [dm6]	TTGCACGG	A	6.810e^-4	1	UTR_3_PRIME CG32091 DOWNSTREAM CG6071
3R	13382188	3R_13382188_SNP [dm3] 3R_17556466_SNP [dm6]	C	T	6.826e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Trl
2R	1394599	2R_1394599_SNP [dm3] 2R_5507094_SNP [dm6]	T	G	6.839e^-4	1	INTRON CG30438 & 1 other
2R	1407522	2R_1407522_SNP [dm3] 2R_5520017_SNP [dm6]	A	T	6.839e^-4	1	INTRON CG30438
3L	10270652	3L_10270652_SNP [dm3] 3L_10277552_SNP [dm6]	T	A	6.854e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	3899839	X_3899839_SNP [dm3] X_4005806_SNP [dm6]	C	G	6.860e^-4	1	INTERGENIC
3L	13710256	3L_13710256_SNP [dm3] 3L_13717156_SNP [dm6]	G	A	6.861e^-4	1	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	5872208	3L_5872208_DEL [dm3] 3L_5879108_DEL [dm6]	AAAATACTCCA...	A	6.864e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17828468	3R_17828468_INS [dm3] 3R_22002746_INS [dm6]	A	AACA	6.878e^-4	1	INTRON Eip93F
3R	17828473	3R_17828473_SNP [dm3] 3R_22002751_SNP [dm6]	A	C	6.878e^-4	1	INTRON Eip93F
2L	6752117	2L_6752117_SNP [dm3] 2L_6752117_SNP [dm6]	T	C	6.885e^-4	1	INTRON CG11221
3L	17817910	3L_17817910_SNP [dm3] 3L_17824810_SNP [dm6]	A	G	6.913e^-4	1	INTRON Grd
2L	4130323	2L_4130323_SNP [dm3] 2L_4130323_SNP [dm6]	G	A	6.914e^-4	1	INTERGENIC
X	20827598	X_20827598_SNP [dm3] X_20956571_SNP [dm6]	C	A	6.914e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
2R	15725565	2R_15725565_SNP [dm3] 2R_19838060_SNP [dm6]	T	G	6.926e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3344357	X_3344357_SNP [dm3] X_3450324_SNP [dm6]	T	A	6.928e^-4	1	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	17828479	3R_17828479_SNP [dm3] 3R_22002757_SNP [dm6]	T	A	6.949e^-4	1	INTRON Eip93F
2L	9921222	2L_9921222_SNP [dm3] 2L_9921222_SNP [dm6]	G	A	6.954e^-4	1	SYNONYMOUS_CODING CG4594 UPSTREAM CG4592
2L	5552835	2L_5552835_SNP [dm3] 2L_5552835_SNP [dm6]	G	A	6.972e^-4	1	DOWNSTREAM CG14013 & 1 other INTERGENIC
2R	7679832	2R_7679832_SNP [dm3] 2R_11792327_SNP [dm6]	C	T	7.013e^-4	1	INTRON ths	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16072039	3L_16072039_SNP [dm3] 3L_16078939_SNP [dm6]	G	A	7.021e^-4	1	UTR_3_PRIME Mbs INTRON Mbs	TF binding site BDTNP1_TFBS_dl
2R	5106039	2R_5106039_SNP [dm3] 2R_9218534_SNP [dm6]	G	A	7.054e^-4	1	INTERGENIC
2R	16595374	2R_16595374_SNP [dm3] 2R_20707869_SNP [dm6]	T	A	7.071e^-4	1	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16595379	2R_16595379_SNP [dm3] 2R_20707874_SNP [dm6]	G	C	7.071e^-4	1	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16595493	2R_16595493_SNP [dm3] 2R_20707988_SNP [dm6]	T	A	7.071e^-4	1	INTRON dpr	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16598473	2R_16598473_SNP [dm3] 2R_20710968_SNP [dm6]	T	G	7.071e^-4	1	INTRON dpr
3R	14647593	3R_14647593_SNP [dm3] 3R_18821871_SNP [dm6]	G	C	7.084e^-4	1	INTRON CG18208
3R	12555667	3R_12555667_SNP [dm3] 3R_16729945_SNP [dm6]	G	A	7.092e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4316422	2L_4316422_SNP [dm3] 2L_4316422_SNP [dm6]	A	G	7.106e^-4	1	DOWNSTREAM tutl INTRON tutl
2R	15827415	2R_15827415_SNP [dm3] 2R_19939910_SNP [dm6]	T	C	7.111e^-4	1	EXON CR43421	TF binding site BDTNP1_TFBS_prd
3L	15267354	3L_15267354_SNP [dm3] 3L_15274254_SNP [dm6]	C	T	7.124e^-4	1	INTERGENIC
2R	19878482	2R_19878482_SNP [dm3] 2R_23990959_SNP [dm6]	T	G	7.130e^-4	1	SYNONYMOUS_CODING Pask
2L	9672350	2L_9672350_SNP [dm3] 2L_9672350_SNP [dm6]	T	G	7.137e^-4	1	INTERGENIC
X	20827998	X_20827998_SNP [dm3] X_20956971_SNP [dm6]	A	C	7.140e^-4	1	INTERGENIC
X	20554957	X_20554957_SNP [dm3] X_20683930_SNP [dm6]	C	T	7.146e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_HSA
X	20557995	X_20557995_SNP [dm3] X_20686968_SNP [dm6]	G	A	7.146e^-4	1	INTRON CR43862	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	1768854	2R_1768854_SNP [dm3] 2R_5881349_SNP [dm6]	A	T	7.147e^-4	1	UPSTREAM CG44438 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10774661	2R_10774661_SNP [dm3] 2R_14887156_SNP [dm6]	C	A	7.161e^-4	1	UPSTREAM Cyp6a21 DOWNSTREAM Cyp6a8 INTERGENIC
2L	13425465	2L_13425465_SNP [dm3] 2L_13425465_SNP [dm6]	G	A	7.162e^-4	1	INTRON CG42784
2R	6741886	2R_6741886_SNP [dm3] 2R_10854381_SNP [dm6]	G	T	7.171e^-4	1	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
3R	9573529	3R_9573529_SNP [dm3] 3R_13747807_SNP [dm6]	G	T	7.181e^-4	1	NON_SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad
2R	17265140	2R_17265140_SNP [dm3] 2R_21377635_SNP [dm6]	A	G	7.215e^-4	1	INTRON cv-2
2R	17265617	2R_17265617_SNP [dm3] 2R_21378112_SNP [dm6]	A	T	7.215e^-4	1	INTRON cv-2
3R	9998746	3R_9998746_SNP [dm3] 3R_14173024_SNP [dm6]	T	C	7.250e^-4	1	UTR_3_PRIME Dop1R1
2L	11485882	2L_11485882_SNP [dm3] 2L_11485882_SNP [dm6]	A	G	7.263e^-4	1	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11485897	2L_11485897_SNP [dm3] 2L_11485897_SNP [dm6]	C	T	7.263e^-4	1	UPSTREAM sala DOWNSTREAM CG43355 INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11518274	2L_11518274_SNP [dm3] 2L_11518274_SNP [dm6]	A	G	7.266e^-4	1	SYNONYMOUS_CODING CG4970	TF binding site mE1_TFBS_sens
3R	12537452	3R_12537452_SNP [dm3] 3R_16711730_SNP [dm6]	G	T	7.289e^-4	1	INTRON Ubx	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12542929	3R_12542929_SNP [dm3] 3R_16717207_SNP [dm6]	A	T	7.289e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17194251	2L_17194251_SNP [dm3] 2L_17194251_SNP [dm6]	G	T	7.300e^-4	1	INTRON beat-IIIc
2L	17194317	2L_17194317_SNP [dm3] 2L_17194317_SNP [dm6]	C	G	7.300e^-4	1	INTRON beat-IIIc
2L	1307848	2L_1307848_INS [dm3] 2L_1307848_INS [dm6]	C	CACC	7.305e^-4	1	INTERGENIC
X	6285674	X_6285674_DEL [dm3] X_6391641_DEL [dm6]	TATCATTAGAATTGATTGAT...	T	7.314e^-4	1	INTERGENIC
3R	9687286	3R_9687286_SNP [dm3] 3R_13861564_SNP [dm6]	A	G	7.315e^-4	1	INTERGENIC
2L	2301983	2L_2301983_SNP [dm3] 2L_2301983_SNP [dm6]	C	A	7.317e^-4	1	INTERGENIC
2L	2302010	2L_2302010_SNP [dm3] 2L_2302010_SNP [dm6]	G	T	7.317e^-4	1	INTERGENIC
3R	25070941	3R_25070941_SNP [dm3] 3R_29245219_SNP [dm6]	G	A	7.344e^-4	1	SYNONYMOUS_CODING SP1029 UPSTREAM CG31445	TF binding site mE1_TFBS_cad
3R	27248657	3R_27248657_SNP [dm3] 3R_31422935_SNP [dm6]	A	C	7.347e^-4	1	INTRON Gprk2
3L	4437303	3L_4437303_SNP [dm3] 3L_4437303_SNP [dm6]	T	C	7.376e^-4	1	SYNONYMOUS_CODING CG15021	TF binding site mE1_TFBS_cad
2L	1667697	2L_1667697_SNP [dm3] 2L_1667697_SNP [dm6]	C	G	7.377e^-4	1	UPSTREAM chinmo INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3R	1661424	3R_1661424_DEL [dm3] 3R_5835702_DEL [dm6]	TA	T	7.378e^-4	1	INTRON CG1208 EXON CR45192
3L	13892013	3L_13892013_SNP [dm3] 3L_13898913_SNP [dm6]	T	C	7.406e^-4	1	INTRON dysc
3L	873298	3L_873298_SNP [dm3] 3L_873298_SNP [dm6]	T	C	7.409e^-4	1	INTRON CG32479	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3898782	X_3898782_SNP [dm3] X_4004749_SNP [dm6]	T	G	7.410e^-4	1	INTERGENIC	insulator Insulator_Class_II.mE01
2L	17777895	2L_17777895_SNP [dm3] 2L_17777895_SNP [dm6]	C	G	7.422e^-4	1	INTRON CadN
2R	12669148	2R_12669148_SNP [dm3] 2R_16781643_SNP [dm6]	T	A	7.443e^-4	1	INTRON resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3613119	2L_3613119_SNP [dm3] 2L_3613119_SNP [dm6]	C	T	7.443e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7923500	3L_7923500_SNP [dm3] 3L_7930400_SNP [dm6]	A	G	7.455e^-4	1	INTRON syd
2R	6080289	2R_6080289_SNP [dm3] 2R_10192784_SNP [dm6]	G	T	7.468e^-4	1	UPSTREAM KCNQ INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	12600819	3R_12600819_SNP [dm3] 3R_16775097_SNP [dm6]	T	C	7.478e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12625628	3R_12625628_SNP [dm3] 3R_16799906_SNP [dm6]	T	A	7.478e^-4	1	UPSTREAM CR45750 INTERGENIC
3R	12625630	3R_12625630_DEL [dm3] 3R_16799908_DEL [dm6]	CCCGCATACAA...	C	7.478e^-4	1	UPSTREAM CR45750 INTERGENIC
3R	12625644	3R_12625644_SNP [dm3] 3R_16799922_SNP [dm6]	T	A	7.478e^-4	1	UPSTREAM CR45750 INTERGENIC
3R	12625649	3R_12625649_SNP [dm3] 3R_16799927_SNP [dm6]	C	A	7.478e^-4	1	UPSTREAM CR45750 INTERGENIC
3R	12625655	3R_12625655_DEL [dm3] 3R_16799933_DEL [dm6]	ATGTGCGGAATC...	A	7.478e^-4	1	UPSTREAM CR45750 INTERGENIC
3R	12626903	3R_12626903_SNP [dm3] 3R_16801181_SNP [dm6]	G	A	7.478e^-4	1	UPSTREAM CR45751 EXON CR45750	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	12627935	3R_12627935_SNP [dm3] 3R_16802213_SNP [dm6]	A	T	7.478e^-4	1	DOWNSTREAM CR45751 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9731694	3R_9731694_SNP [dm3] 3R_13905972_SNP [dm6]	A	C	7.478e^-4	1	INTERGENIC
3L	7845387	3L_7845387_SNP [dm3] 3L_7852287_SNP [dm6]	G	A	7.479e^-4	1	INTRON Pdp1
2L	11658644	2L_11658644_SNP [dm3] 2L_11658644_SNP [dm6]	A	G	7.494e^-4	1	DOWNSTREAM CG43167 INTERGENIC	TF binding site mE1_TFBS_inv
3L	4982024	3L_4982024_SNP [dm3] 3L_4982024_SNP [dm6]	T	A	7.495e^-4	1	DOWNSTREAM CR45685 INTRON Con	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6521856	3L_6521856_SNP [dm3] 3L_6528756_SNP [dm6]	C	G	7.505e^-4	1	INTRON sfl
2R	1377448	2R_1377448_SNP [dm3] 2R_5489943_SNP [dm6]	G	A	7.511e^-4	1	INTRON CG30440	transposable element FlyBase
2R	1378376	2R_1378376_SNP [dm3] 2R_5490871_SNP [dm6]	T	C	7.511e^-4	1	INTRON CG30440
2R	1378861	2R_1378861_SNP [dm3] 2R_5491356_SNP [dm6]	T	C	7.511e^-4	1	INTRON CG30440
2R	1382243	2R_1382243_SNP [dm3] 2R_5494738_SNP [dm6]	G	A	7.511e^-4	1	NON_SYNONYMOUS_CODING CG30440
2R	1386479	2R_1386479_SNP [dm3] 2R_5498974_SNP [dm6]	G	A	7.511e^-4	1	INTRON CG30438
2R	1386795	2R_1386795_DEL [dm3] 2R_5499290_DEL [dm6]	AATGAGATTTTGCATCGATG...	A	7.511e^-4	1	INTRON CG30438
2R	1386827	2R_1386827_SNP [dm3] 2R_5499322_SNP [dm6]	G	C	7.511e^-4	1	INTRON CG30438
2R	1388237	2R_1388237_SNP [dm3] 2R_5500732_SNP [dm6]	C	T	7.511e^-4	1	INTRON CG30438	transposable element FlyBase
2R	1388856	2R_1388856_SNP [dm3] 2R_5501351_SNP [dm6]	C	G	7.511e^-4	1	INTRON CG30438	transposable element FlyBase
2R	1389210	2R_1389210_DEL [dm3] 2R_5501705_DEL [dm6]	AACGTGTTACTACCTAC...	T	7.511e^-4	1	INTRON CG30438	transposable element FlyBase
2R	1390496	2R_1390496_SNP [dm3] 2R_5502991_SNP [dm6]	C	A	7.511e^-4	1	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	1390777	2R_1390777_SNP [dm3] 2R_5503272_SNP [dm6]	G	A	7.511e^-4	1	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	1390815	2R_1390815_DEL [dm3] 2R_5503310_DEL [dm6]	TT	T	7.511e^-4	1	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	1391781	2R_1391781_SNP [dm3] 2R_5504276_SNP [dm6]	A	T	7.511e^-4	1	INTRON CG30438 & 1 other
2R	1393010	2R_1393010_SNP [dm3] 2R_5505505_SNP [dm6]	G	A	7.511e^-4	1	INTRON CG30438 & 1 other
2R	1393640	2R_1393640_SNP [dm3] 2R_5506135_SNP [dm6]	T	A	7.511e^-4	1	INTRON CG30438 & 1 other
2R	1394337	2R_1394337_SNP [dm3] 2R_5506832_SNP [dm6]	T	G	7.511e^-4	1	INTRON CG30438 & 1 other
2R	1394382	2R_1394382_SNP [dm3] 2R_5506877_SNP [dm6]	G	C	7.511e^-4	1	INTRON CG30438 & 1 other
2R	1396774	2R_1396774_SNP [dm3] 2R_5509269_SNP [dm6]	G	A	7.511e^-4	1	INTRON CG30438
2R	1396775	2R_1396775_SNP [dm3] 2R_5509270_SNP [dm6]	T	C	7.511e^-4	1	INTRON CG30438
2R	1397235	2R_1397235_SNP [dm3] 2R_5509730_SNP [dm6]	C	G	7.511e^-4	1	INTRON CG30438
2R	1401975	2R_1401975_SNP [dm3] 2R_5514470_SNP [dm6]	T	A	7.511e^-4	1	INTRON CG30438	transposable element FlyBase
2R	1402592	2R_1402592_SNP [dm3] 2R_5515087_SNP [dm6]	A	G	7.511e^-4	1	INTRON CG30438
2R	1404629	2R_1404629_SNP [dm3] 2R_5517124_SNP [dm6]	G	A	7.511e^-4	1	INTRON CG30438	transposable element FlyBase
3L	13829028	3L_13829028_SNP [dm3] 3L_13835928_SNP [dm6]	A	T	7.528e^-4	1	INTERGENIC
3L	9274923	3L_9274923_DEL [dm3] 3L_9281823_DEL [dm6]	ACAGTGAGAGAATCA...	A	7.541e^-4	1	INTRON GluRIB
3R	2838419	3R_2838419_SNP [dm3] 3R_7012697_SNP [dm6]	T	G	7.544e^-4	1	INTERGENIC
3L	11187945	3L_11187945_SNP [dm3] 3L_11194845_SNP [dm6]	C	A	7.549e^-4	1	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2R	8928905	2R_8928905_SNP [dm3] 2R_13041400_SNP [dm6]	G	T	7.563e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	9525895	3L_9525895_SNP [dm3] 3L_9532795_SNP [dm6]	G	T	7.571e^-4	1	INTERGENIC
3L	3803144	3L_3803144_SNP [dm3] 3L_3803144_SNP [dm6]	C	T	7.582e^-4	1	DOWNSTREAM ntc INTRON CG32264
2L	16234750	2L_16234750_SNP [dm3] 2L_16234750_SNP [dm6]	A	T	7.583e^-4	1	INTRON CG42817	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7638985	2R_7638985_SNP [dm3] 2R_11751480_SNP [dm6]	C	T	7.584e^-4	1	INTERGENIC
2L	13682736	2L_13682736_SNP [dm3] 2L_13682736_SNP [dm6]	T	A	7.600e^-4	1	INTRON CG31814
2R	17974369	2R_17974369_SNP [dm3] 2R_22086864_SNP [dm6]	G	A	7.609e^-4	1	SYNONYMOUS_CODING CG13502 INTRON CG13502
2R	15839573	2R_15839573_SNP [dm3] 2R_19952068_SNP [dm6]	G	A	7.611e^-4	1	DOWNSTREAM CG10822 INTERGENIC
X	16318819	X_16318819_SNP [dm3] X_16424786_SNP [dm6]	G	C	7.619e^-4	1	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16090769	2R_16090769_SNP [dm3] 2R_20203264_SNP [dm6]	T	C	7.629e^-4	1	INTERGENIC
3L	5195326	3L_5195326_SNP [dm3] 3L_5202226_SNP [dm6]	A	G	7.634e^-4	1	UPSTREAM shep INTRON shep
3L	5195397	3L_5195397_SNP [dm3] 3L_5202297_SNP [dm6]	A	T	7.634e^-4	1	UPSTREAM shep INTRON shep
2R	18642457	2R_18642457_DEL [dm3] 2R_22754952_DEL [dm6]	CC	C	7.659e^-4	1	UPSTREAM CG13526 INTRON CG42260
X	8548252	X_8548252_SNP [dm3] X_8654219_SNP [dm6]	C	A	7.683e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	4265046	2L_4265046_SNP [dm3] 2L_4265046_SNP [dm6]	G	A	7.689e^-4	1	INTERGENIC
3R	19054748	3R_19054748_SNP [dm3] 3R_23229026_SNP [dm6]	G	A	7.719e^-4	1	UTR_3_PRIME CG4467	TF binding site mE1_TFBS_Trl
2R	1401691	2R_1401691_SNP [dm3] 2R_5514186_SNP [dm6]	T	A	7.724e^-4	1	INTRON CG30438	transposable element FlyBase
2R	1415509	2R_1415509_SNP [dm3] 2R_5528004_SNP [dm6]	A	G	7.724e^-4	1	INTRON CG30438
2R	1418332	2R_1418332_SNP [dm3] 2R_5530827_SNP [dm6]	T	A	7.724e^-4	1	INTRON CG30438	transposable element FlyBase
2R	1422122	2R_1422122_SNP [dm3] 2R_5534617_SNP [dm6]	A	G	7.724e^-4	1	INTRON CG30438	transposable element FlyBase
2R	1427365	2R_1427365_SNP [dm3] 2R_5539860_SNP [dm6]	G	A	7.724e^-4	1	INTRON CG30438
2R	1430548	2R_1430548_SNP [dm3] 2R_5543043_SNP [dm6]	C	G	7.724e^-4	1	INTRON CG30438
3L	13889274	3L_13889274_SNP [dm3] 3L_13896174_SNP [dm6]	A	T	7.728e^-4	1	INTRON dysc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10767937	3L_10767937_SNP [dm3] 3L_10774837_SNP [dm6]	T	C	7.751e^-4	1	INTERGENIC
3R	5087429	3R_5087429_SNP [dm3] 3R_9261707_SNP [dm6]	C	G	7.755e^-4	1	SYNONYMOUS_CODING VhaM8.9 DOWNSTREAM sage
3L	11482292	3L_11482292_SNP [dm3] 3L_11489192_SNP [dm6]	C	T	7.761e^-4	1	INTRON chrb	TF binding site BDTNP1_TFBS_dl
X	19614372	X_19614372_DEL [dm3] X_19720339_DEL [dm6]	ACACACAGA	A	7.771e^-4	1	INTRON CG12531
X	19121391	X_19121391_SNP [dm3] X_19227358_SNP [dm6]	A	G	7.775e^-4	1	INTRON CG7884	TF binding site mE1_TFBS_HSA
2L	5349218	2L_5349218_SNP [dm3] 2L_5349218_SNP [dm6]	G	A	7.777e^-4	1	INTRON nompC
3L	1240677	3L_1240677_SNP [dm3] 3L_1240677_SNP [dm6]	T	C	7.778e^-4	1	SYNONYMOUS_CODING CG9194 DOWNSTREAM Klp61F	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10575075	2L_10575075_DEL [dm3] 2L_10575075_DEL [dm6]	TT	T	7.792e^-4	1	DOWNSTREAM w-cup INTRON Trim9
X	15575952	X_15575952_SNP [dm3] X_15681919_SNP [dm6]	T	C	7.845e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2R	18356788	2R_18356788_SNP [dm3] 2R_22469283_SNP [dm6]	G	T	7.868e^-4	1	INTRON CG10384	TF binding site mE1_TFBS_chinmo
2R	5713876	2R_5713876_SNP [dm3] 2R_9826371_SNP [dm6]	G	A	7.869e^-4	1	SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8725601	X_8725601_SNP [dm3] X_8831568_SNP [dm6]	C	T	7.874e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8929008	2R_8929008_MNP [dm3] 2R_13041503_MNP [dm6]	CAA	ATG	7.880e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3619229	3L_3619229_SNP [dm3] 3L_3619229_SNP [dm6]	C	T	7.881e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	13610933	2L_13610933_SNP [dm3] 2L_13610933_SNP [dm6]	A	C	7.905e^-4	1	DOWNSTREAM mir-2489 INTRON kuz
3L	2784423	3L_2784423_SNP [dm3] 3L_2784423_SNP [dm6]	C	A	7.910e^-4	1	SYNONYMOUS_CODING pgant6
3L	2785152	3L_2785152_SNP [dm3] 3L_2785152_SNP [dm6]	G	A	7.910e^-4	1	NON_SYNONYMOUS_CODING pgant6
2L	14611234	2L_14611234_SNP [dm3] 2L_14611234_SNP [dm6]	A	G	7.910e^-4	1	SYNONYMOUS_CODING osp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	11957569	3L_11957569_SNP [dm3] 3L_11964469_SNP [dm6]	A	T	7.919e^-4	1	SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
3L	5873225	3L_5873225_SNP [dm3] 3L_5880125_SNP [dm6]	A	C	7.922e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3683735	2L_3683735_SNP [dm3] 2L_3683735_SNP [dm6]	C	G	7.930e^-4	1	INTRON CG34340
2L	4263423	2L_4263423_INS [dm3] 2L_4263423_INS [dm6]	T	TTATAAGCTGAAAAT...	7.931e^-4	1	INTERGENIC
3L	11177615	3L_11177615_SNP [dm3] 3L_11184515_SNP [dm6]	A	C	7.931e^-4	1	INTRON GlcAT-P
3L	16271582	3L_16271582_DEL [dm3] 3L_16278482_DEL [dm6]	TTGACCA	T	7.932e^-4	1	UTR_3_PRIME CG13050 DOWNSTREAM CG13065
3R	21984728	3R_21984728_SNP [dm3] 3R_26159006_SNP [dm6]	G	A	7.937e^-4	1	INTERGENIC
2R	6090613	2R_6090613_SNP [dm3] 2R_10203108_SNP [dm6]	G	T	7.941e^-4	1	DOWNSTREAM Hr46 INTERGENIC
3L	12214237	3L_12214237_SNP [dm3] 3L_12221137_SNP [dm6]	G	A	7.951e^-4	1	UTR_5_PRIME app	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	16789513	3L_16789513_SNP [dm3] 3L_16796413_SNP [dm6]	G	T	7.963e^-4	1	INTRON CG9674	TF binding site mE1_TFBS_cad
3R	26986560	3R_26986560_SNP [dm3] 3R_31160838_SNP [dm6]	T	C	7.964e^-4	1	INTRON Gycbeta100B & 1 other
2L	3312469	2L_3312469_SNP [dm3] 2L_3312469_SNP [dm6]	C	T	7.978e^-4	1	DOWNSTREAM CG15406 INTRON CG3277
3R	19041050	3R_19041050_SNP [dm3] 3R_23215328_SNP [dm6]	G	T	7.978e^-4	1	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	12939850	3L_12939850_SNP [dm3] 3L_12946750_SNP [dm6]	T	A	8.000e^-4	1	INTERGENIC
3L	16027078	3L_16027078_SNP [dm3] 3L_16033978_SNP [dm6]	T	C	8.002e^-4	1	NON_SYNONYMOUS_CODING CG42716 UPSTREAM CG42717 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1405105	2R_1405105_SNP [dm3] 2R_5517600_SNP [dm6]	A	G	8.005e^-4	1	INTRON CG30438	transposable element FlyBase
2L	9532104	2L_9532104_SNP [dm3] 2L_9532104_SNP [dm6]	T	G	8.005e^-4	1	INTRON Oatp30B
X	3015039	X_3015039_SNP [dm3] X_3121006_SNP [dm6]	T	A	8.006e^-4	1	INTRON kirre
X	2577355	X_2577355_SNP [dm3] X_2683322_SNP [dm6]	T	C	8.014e^-4	1	UPSTREAM CG2652 EXON CR44470
3L	12615667	3L_12615667_SNP [dm3] 3L_12622567_SNP [dm6]	C	A	8.015e^-4	1	DOWNSTREAM caup INTERGENIC
X	7880360	X_7880360_SNP [dm3] X_7986327_SNP [dm6]	C	A	8.015e^-4	1	UTR_3_PRIME sn DOWNSTREAM sn
2R	3929325	2R_3929325_SNP [dm3] 2R_8041820_SNP [dm6]	C	A	8.028e^-4	1	SYNONYMOUS_CODING Optix
2R	17717257	2R_17717257_SNP [dm3] 2R_21829752_SNP [dm6]	A	T	8.039e^-4	1	NON_SYNONYMOUS_CODING CG13492
2R	17717260	2R_17717260_SNP [dm3] 2R_21829755_SNP [dm6]	C	A	8.039e^-4	1	SYNONYMOUS_CODING CG13492
3L	876970	3L_876970_SNP [dm3] 3L_876970_SNP [dm6]	C	T	8.047e^-4	1	DOWNSTREAM CG13907 INTRON CG32479	TF binding site mE1_TFBS_sens
X	19614197	X_19614197_INS [dm3] X_19720164_INS [dm6]	T	TGTGT	8.053e^-4	1	INTRON CG12531
3R	7193551	3R_7193551_SNP [dm3] 3R_11367829_SNP [dm6]	T	C	8.056e^-4	1	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13638252	2R_13638252_SNP [dm3] 2R_17750747_SNP [dm6]	T	A	8.060e^-4	1	DOWNSTREAM CG10931 INTRON CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13380968	2R_13380968_SNP [dm3] 2R_17493463_SNP [dm6]	T	C	8.075e^-4	1	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	13770530	2R_13770530_SNP [dm3] 2R_17883025_SNP [dm6]	C	G	8.105e^-4	1	UPSTREAM CG30110 INTRON Elk
2R	17725093	2R_17725093_DEL [dm3] 2R_21837588_DEL [dm6]	ACTAAGTAGGTCTACC...	T	8.118e^-4	1	DOWNSTREAM CG4372 INTERGENIC
3R	26075017	3R_26075017_INS [dm3] 3R_30249295_INS [dm6]	C	CA	8.123e^-4	1	UPSTREAM CG34299 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	14611117	2L_14611117_SNP [dm3] 2L_14611117_SNP [dm6]	T	C	8.132e^-4	1	SYNONYMOUS_CODING osp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	12542957	3R_12542957_SNP [dm3] 3R_16717235_SNP [dm6]	G	T	8.154e^-4	1	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1238294	2R_1238294_SNP [dm3] 2R_5350789_SNP [dm6]	A	G	8.187e^-4	1	NON_SYNONYMOUS_CODING CG10395 DOWNSTREAM CG30441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9495039	2R_9495039_SNP [dm3] 2R_13607534_SNP [dm6]	A	C	8.205e^-4	1	INTERGENIC
2L	12332205	2L_12332205_SNP [dm3] 2L_12332205_SNP [dm6]	T	G	8.218e^-4	1	INTERGENIC
2R	13157643	2R_13157643_DEL [dm3] 2R_17270138_DEL [dm6]	TGTATCT	T	8.236e^-4	1	INTRON mbl
3R	9999215	3R_9999215_SNP [dm3] 3R_14173493_SNP [dm6]	A	G	8.241e^-4	1	UTR_3_PRIME Dop1R1
3R	9999220	3R_9999220_DEL [dm3] 3R_14173498_DEL [dm6]	CCG	TT	8.241e^-4	1	UTR_3_PRIME Dop1R1
3R	9999227	3R_9999227_MNP [dm3] 3R_14173505_MNP [dm6]	AGC	TTA	8.241e^-4	1	UTR_3_PRIME Dop1R1
3R	9999231	3R_9999231_MNP [dm3] 3R_14173509_MNP [dm6]	GGC	TAT	8.241e^-4	1	UTR_3_PRIME Dop1R1
X	18418967	X_18418967_SNP [dm3] X_18524934_SNP [dm6]	G	T	8.249e^-4	1	INTRON Bx
X	18091785	X_18091785_SNP [dm3] X_18197752_SNP [dm6]	G	A	8.307e^-4	1	INTRON Frq2	TF binding site mE1_TFBS_chinmo
X	14972192	X_14972192_SNP [dm3] X_15078159_SNP [dm6]	T	C	8.309e^-4	1	EXON CR44662
3R	11071911	3R_11071911_SNP [dm3] 3R_15246189_SNP [dm6]	A	G	8.320e^-4	1	SYNONYMOUS_CODING Hsc70-4 DOWNSTREAM CG6499	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12628874	3R_12628874_SNP [dm3] 3R_16803152_SNP [dm6]	C	G	8.334e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19121183	2L_19121183_SNP [dm3] 2L_19121183_SNP [dm6]	G	A	8.338e^-4	1	UPSTREAM Ddc DOWNSTREAM l_2_37Cc INTERGENIC	regulatory region REDfly_CRMs
3L	11180074	3L_11180074_SNP [dm3] 3L_11186974_SNP [dm6]	C	T	8.346e^-4	1	INTRON GlcAT-P
2L	9214058	2L_9214058_SNP [dm3] 2L_9214058_SNP [dm6]	T	G	8.362e^-4	1	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9214063	2L_9214063_SNP [dm3] 2L_9214063_SNP [dm6]	A	G	8.362e^-4	1	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9214069	2L_9214069_SNP [dm3] 2L_9214069_SNP [dm6]	C	T	8.362e^-4	1	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9214080	2L_9214080_SNP [dm3] 2L_9214080_SNP [dm6]	T	G	8.362e^-4	1	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9214133	2L_9214133_SNP [dm3] 2L_9214133_SNP [dm6]	T	G	8.362e^-4	1	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18732276	3L_18732276_SNP [dm3] 3L_18739176_SNP [dm6]	T	C	8.386e^-4	1	INTERGENIC
2R	10870492	2R_10870492_DEL [dm3] 2R_14982987_DEL [dm6]	AGA	A	8.388e^-4	1	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13311343	3R_13311343_SNP [dm3] 3R_17485621_SNP [dm6]	C	A	8.405e^-4	1	INTRON Dscam3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17169914	2L_17169914_SNP [dm3] 2L_17169914_SNP [dm6]	C	G	8.406e^-4	1	SYNONYMOUS_CODING beat-IIIa UTR_5_PRIME CG34106
X	21011995	X_21011995_DEL [dm3] X_21140968_DEL [dm6]	ACGTAAATGTATGTTTAGTC...	A	8.412e^-4	1	DOWNSTREAM CG34120 INTERGENIC
3R	22877897	3R_22877897_SNP [dm3] 3R_27052175_SNP [dm6]	G	A	8.416e^-4	1	INTRON RYa-R
3L	8203273	3L_8203273_SNP [dm3] 3L_8210173_SNP [dm6]	T	C	8.435e^-4	1	SYNONYMOUS_CODING CG32364
2R	16168236	2R_16168236_SNP [dm3] 2R_20280731_SNP [dm6]	T	C	8.437e^-4	1	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3L	3115500	3L_3115500_SNP [dm3] 3L_3115500_SNP [dm6]	A	G	8.461e^-4	1	UTR_3_PRIME prominin-like DOWNSTREAM prominin-like
2R	1402284	2R_1402284_SNP [dm3] 2R_5514779_SNP [dm6]	G	A	8.466e^-4	1	INTRON CG30438	transposable element FlyBase
2R	19550285	2R_19550285_SNP [dm3] 2R_23662762_SNP [dm6]	G	A	8.467e^-4	1	INTRON Pde8	TF binding site BDTNP1_TFBS_dl
2R	1390803	2R_1390803_SNP [dm3] 2R_5503298_SNP [dm6]	A	G	8.475e^-4	1	DOWNSTREAM TpnC4 INTRON CG30438	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	1395891	2R_1395891_SNP [dm3] 2R_5508386_SNP [dm6]	G	A	8.475e^-4	1	UPSTREAM TpnC4 INTRON CG30438
3L	9833998	3L_9833998_SNP [dm3] 3L_9840898_SNP [dm6]	C	T	8.479e^-4	1	SYNONYMOUS_CODING RasGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20824541	X_20824541_SNP [dm3] X_20953514_SNP [dm6]	T	C	8.488e^-4	1	INTERGENIC
3L	5542863	3L_5542863_SNP [dm3] 3L_5549763_SNP [dm6]	C	T	8.492e^-4	1	INTRON CG10625
3L	11320143	3L_11320143_SNP [dm3] 3L_11327043_SNP [dm6]	A	T	8.508e^-4	1	INTERGENIC
3L	11320172	3L_11320172_SNP [dm3] 3L_11327072_SNP [dm6]	A	T	8.508e^-4	1	INTERGENIC
3L	2400054	3L_2400054_SNP [dm3] 3L_2400054_SNP [dm6]	G	T	8.518e^-4	1	UPSTREAM CG45186 INTRON CG45186
2R	12274910	2R_12274910_SNP [dm3] 2R_16387405_SNP [dm6]	T	A	8.521e^-4	1	INTRON Sema-2b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	1391596	2R_1391596_SNP [dm3] 2R_5504091_SNP [dm6]	T	G	8.552e^-4	1	INTRON CG30438 & 1 other	transposable element FlyBase
3L	18143352	3L_18143352_SNP [dm3] 3L_18150252_SNP [dm6]	C	A	8.554e^-4	1	INTRON CG7330
2R	17975108	2R_17975108_SNP [dm3] 2R_22087603_SNP [dm6]	C	A	8.555e^-4	1	UPSTREAM CG13502 INTRON CG13502
3L	18545628	3L_18545628_SNP [dm3] 3L_18552528_SNP [dm6]	T	A	8.556e^-4	1	INTERGENIC
X	2398777	X_2398777_SNP [dm3] X_2504744_SNP [dm6]	A	G	8.589e^-4	1	INTRON trol
2R	2817819	2R_2817819_SNP [dm3] 2R_6930314_SNP [dm6]	A	C	8.593e^-4	1	NON_SYNONYMOUS_CODING mim	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	13814467	2R_13814467_SNP [dm3] 2R_17926962_SNP [dm6]	A	G	8.616e^-4	1	DOWNSTREAM Elk INTERGENIC
2L	2301969	2L_2301969_SNP [dm3] 2L_2301969_SNP [dm6]	A	C	8.634e^-4	1	INTERGENIC
2L	14150352	2L_14150352_SNP [dm3] 2L_14150352_SNP [dm6]	G	A	8.639e^-4	1	INTRON CG17341
2L	22598063	2L_22598063_DEL [dm3] 2L_22705331_DEL [dm6]	TG	T	8.651e^-4	1	INTRON CG40006
2L	22598072	2L_22598072_INS [dm3] 2L_22705340_INS [dm6]	A	ACTC	8.651e^-4	1	INTRON CG40006
2L	22598077	2L_22598077_DEL [dm3] 2L_22705345_DEL [dm6]	CTTTG	C	8.651e^-4	1	INTRON CG40006
3R	4616191	3R_4616191_SNP [dm3] 3R_8790469_SNP [dm6]	C	T	8.651e^-4	1	INTRON Pif1B & 1 other
X	4714818	X_4714818_SNP [dm3] X_4820785_SNP [dm6]	T	C	8.668e^-4	1	INTERGENIC
2L	18902558	2L_18902558_SNP [dm3] 2L_18902558_SNP [dm6]	C	A	8.668e^-4	1	INTERGENIC
2R	18869346	2R_18869346_SNP [dm3] 2R_22981823_SNP [dm6]	C	T	8.668e^-4	1	DOWNSTREAM CG32834 INTERGENIC
3L	12145168	3L_12145168_SNP [dm3] 3L_12152068_SNP [dm6]	C	T	8.672e^-4	1	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3L	15116074	3L_15116074_SNP [dm3] 3L_15122974_SNP [dm6]	C	T	8.688e^-4	1	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
2R	16168277	2R_16168277_SNP [dm3] 2R_20280772_SNP [dm6]	T	G	8.690e^-4	1	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
2R	16168278	2R_16168278_SNP [dm3] 2R_20280773_SNP [dm6]	T	C	8.690e^-4	1	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3R	12670588	3R_12670588_SNP [dm3] 3R_16844866_SNP [dm6]	G	C	8.700e^-4	1	DOWNSTREAM iab-8 INTRON iab-8
3R	19041000	3R_19041000_SNP [dm3] 3R_23215278_SNP [dm6]	G	A	8.700e^-4	1	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3R	19041008	3R_19041008_SNP [dm3] 3R_23215286_SNP [dm6]	T	C	8.700e^-4	1	UPSTREAM cnc INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	14070202	3L_14070202_INS [dm3] 3L_14077102_INS [dm6]	T	TTCGCTCGATT...	8.707e^-4	1	UTR_5_PRIME btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1417959	2R_1417959_SNP [dm3] 2R_5530454_SNP [dm6]	G	C	8.708e^-4	1	INTRON CG30438	transposable element FlyBase
X	3014818	X_3014818_SNP [dm3] X_3120785_SNP [dm6]	C	T	8.717e^-4	1	INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9454645	2L_9454645_SNP [dm3] 2L_9454645_SNP [dm6]	A	T	8.722e^-4	1	INTRON numb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	1378564	2R_1378564_SNP [dm3] 2R_5491059_SNP [dm6]	C	A	8.737e^-4	1	INTRON CG30440
2R	1385903	2R_1385903_SNP [dm3] 2R_5498398_SNP [dm6]	G	A	8.737e^-4	1	INTRON CG30438	transposable element FlyBase
2R	1403159	2R_1403159_SNP [dm3] 2R_5515654_SNP [dm6]	G	A	8.737e^-4	1	INTRON CG30438
2R	1407219	2R_1407219_SNP [dm3] 2R_5519714_SNP [dm6]	T	A	8.737e^-4	1	INTRON CG30438
2R	1407285	2R_1407285_SNP [dm3] 2R_5519780_SNP [dm6]	T	G	8.737e^-4	1	INTRON CG30438

By genomic position
Variant impact
Gene name

dead phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results