DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.738e^-19)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2377 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	6994275	2R_6994275_SNP [dm3] 2R_11106770_SNP [dm6]	G	T	3.425e^-7	0.351	UTR_5_PRIME luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1286335	3L_1286335_SNP [dm3] 3L_1286335_SNP [dm6]	G	A	3.741e^-7	0.351	INTRON CG32333
2R	7007339	2R_7007339_SNP [dm3] 2R_11119834_SNP [dm6]	T	C	8.290e^-7	0.478	UTR_3_PRIME Cyp12d1-p DOWNSTREAM Cyp12d1-p
X	5940506	X_5940506_SNP [dm3] X_6046473_SNP [dm6]	C	T	1.492e^-6	0.478	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14962751	3L_14962751_SNP [dm3] 3L_14969651_SNP [dm6]	C	T	1.847e^-6	0.478	SYNONYMOUS_CODING Tom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5940191	X_5940191_SNP [dm3] X_6046158_SNP [dm6]	T	G	2.027e^-6	0.478	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_sens
2R	6999812	2R_6999812_SNP [dm3] 2R_11112307_SNP [dm6]	A	G	2.194e^-6	0.478	INTRON luna
2R	6999263	2R_6999263_SNP [dm3] 2R_11111758_SNP [dm6]	T	G	2.382e^-6	0.478	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	5134794	2L_5134794_SNP [dm3] 2L_5134794_SNP [dm6]	A	G	2.445e^-6	0.478	SYNONYMOUS_CODING Msp300 INTRON Msp300
X	5940384	X_5940384_SNP [dm3] X_6046351_SNP [dm6]	C	T	2.633e^-6	0.478	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16667721	2R_16667721_SNP [dm3] 2R_20780216_SNP [dm6]	G	A	2.804e^-6	0.478	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
X	5940326	X_5940326_SNP [dm3] X_6046293_SNP [dm6]	C	T	3.430e^-6	0.499	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5940380	X_5940380_SNP [dm3] X_6046347_SNP [dm6]	A	G	3.460e^-6	0.499	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16667377	2R_16667377_SNP [dm3] 2R_20779872_SNP [dm6]	A	T	3.934e^-6	0.509	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
3R	22139517	3R_22139517_SNP [dm3] 3R_26313795_SNP [dm6]	G	C	4.725e^-6	0.509	INTERGENIC
2R	6994584	2R_6994584_INS [dm3] 2R_11107079_INS [dm6]	A	ACATAC	4.801e^-6	0.509	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13240443	3L_13240443_SNP [dm3] 3L_13247343_SNP [dm6]	G	C	5.005e^-6	0.509	SYNONYMOUS_CODING CG32119 INTRON caps	TF binding site mE1_TFBS_HSA
3L	11266387	3L_11266387_SNP [dm3] 3L_11273287_SNP [dm6]	G	A	5.053e^-6	0.509	DOWNSTREAM CR44720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5939714	X_5939714_SNP [dm3] X_6045681_SNP [dm6]	C	T	5.229e^-6	0.509	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo
2L	2264650	2L_2264650_SNP [dm3] 2L_2264650_SNP [dm6]	A	T	5.640e^-6	0.509	SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
3L	5839105	3L_5839105_SNP [dm3] 3L_5846005_SNP [dm6]	A	T	5.704e^-6	0.509	UPSTREAM vn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16665509	2R_16665509_SNP [dm3] 2R_20778004_SNP [dm6]	A	C	6.077e^-6	0.518	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
2R	16667474	2R_16667474_INS [dm3] 2R_20779969_INS [dm6]	A	AAG	6.736e^-6	0.548	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
2L	1035901	2L_1035901_SNP [dm3] 2L_1035901_SNP [dm6]	C	T	7.018e^-6	0.548	INTRON IA-2
2R	9924871	2R_9924871_SNP [dm3] 2R_14037366_SNP [dm6]	G	A	7.979e^-6	0.58	INTRON mam	TF binding site mE1_TFBS_HSA
3L	5845082	3L_5845082_SNP [dm3] 3L_5851982_SNP [dm6]	G	A	8.039e^-6	0.58	INTERGENIC
X	5940725	X_5940725_SNP [dm3] X_6046692_SNP [dm6]	A	T	9.168e^-6	0.621	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	5134713	2L_5134713_SNP [dm3] 2L_5134713_SNP [dm6]	C	T	9.276e^-6	0.621	SYNONYMOUS_CODING Msp300 INTRON Msp300
X	4416638	X_4416638_SNP [dm3] X_4522605_SNP [dm6]	C	T	1.000e^-5	0.626	INTRON CR32773
3L	7796285	3L_7796285_SNP [dm3] 3L_7803185_SNP [dm6]	G	A	1.027e^-5	0.626	INTRON CG32369	TF binding site mE1_TFBS_cad
2R	16665531	2R_16665531_INS [dm3] 2R_20778026_INS [dm6]	G	GTTTAG	1.049e^-5	0.626	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
2L	18955294	2L_18955294_SNP [dm3] 2L_18955294_SNP [dm6]	G	A	1.087e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	14863186	2L_14863186_SNP [dm3] 2L_14863186_SNP [dm6]	G	A	1.165e^-5	0.626	INTERGENIC
2R	16667463	2R_16667463_SNP [dm3] 2R_20779958_SNP [dm6]	C	T	1.199e^-5	0.626	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
3L	8323062	3L_8323062_SNP [dm3] 3L_8329962_SNP [dm6]	A	C	1.233e^-5	0.626	NON_SYNONYMOUS_CODING CG34462
3R	9894341	3R_9894341_SNP [dm3] 3R_14068619_SNP [dm6]	G	A	1.265e^-5	0.626	INTRON foxo
2L	18955323	2L_18955323_SNP [dm3] 2L_18955323_SNP [dm6]	G	T	1.317e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	18955282	2L_18955282_SNP [dm3] 2L_18955282_SNP [dm6]	A	T	1.366e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	16376332	2R_16376332_SNP [dm3] 2R_20488827_SNP [dm6]	T	A	1.368e^-5	0.626	INTERGENIC
2R	16666807	2R_16666807_SNP [dm3] 2R_20779302_SNP [dm6]	A	T	1.418e^-5	0.626	SYNONYMOUS_CODING CG43711 DOWNSTREAM CR44666
2R	6995302	2R_6995302_SNP [dm3] 2R_11107797_SNP [dm6]	T	A	1.419e^-5	0.626	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	732000	2L_732000_SNP [dm3] 2L_732000_SNP [dm6]	C	G	1.444e^-5	0.626	INTERGENIC
3R	22312916	3R_22312916_SNP [dm3] 3R_26487194_SNP [dm6]	A	G	1.459e^-5	0.626	INTRON plum	TF binding site mE1_TFBS_inv
3L	11898847	3L_11898847_SNP [dm3] 3L_11905747_SNP [dm6]	G	A	1.489e^-5	0.626	INTRON CG44837
X	5940458	X_5940458_SNP [dm3] X_6046425_SNP [dm6]	T	C	1.765e^-5	0.626	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1266122	2L_1266122_SNP [dm3] 2L_1266122_SNP [dm6]	A	G	1.823e^-5	0.626	INTRON robo3
2R	7007374	2R_7007374_SNP [dm3] 2R_11119869_SNP [dm6]	C	T	1.829e^-5	0.626	UTR_3_PRIME Cyp12d1-p DOWNSTREAM Cyp12d1-p
2L	9618352	2L_9618352_SNP [dm3] 2L_9618352_SNP [dm6]	C	T	1.836e^-5	0.626	INTRON GlcAT-S
2L	14394945	2L_14394945_SNP [dm3] 2L_14394945_SNP [dm6]	C	T	1.854e^-5	0.626	INTRON elB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7297922	2L_7297922_SNP [dm3] 2L_7297922_SNP [dm6]	A	G	1.856e^-5	0.626	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	18117876	2R_18117876_SNP [dm3] 2R_22230371_SNP [dm6]	A	C	1.877e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6995229	2R_6995229_SNP [dm3] 2R_11107724_SNP [dm6]	A	T	1.900e^-5	0.626	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11702873	3L_11702873_SNP [dm3] 3L_11709773_SNP [dm6]	C	A	1.901e^-5	0.626	NON_SYNONYMOUS_CODING mtTFB1 UTR_3_PRIME Ccdc56 DOWNSTREAM crim	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9924958	2R_9924958_SNP [dm3] 2R_14037453_SNP [dm6]	G	T	2.005e^-5	0.626	INTRON mam	TF binding site mE1_TFBS_HSA
3R	21457268	3R_21457268_SNP [dm3] 3R_25631546_SNP [dm6]	A	T	2.022e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17088175	2R_17088175_SNP [dm3] 2R_21200670_SNP [dm6]	C	T	2.032e^-5	0.626	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17087840	2R_17087840_SNP [dm3] 2R_21200335_SNP [dm6]	C	G	2.092e^-5	0.626	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	17089888	2R_17089888_SNP [dm3] 2R_21202383_SNP [dm6]	A	T	2.106e^-5	0.626	UPSTREAM Glycogenin INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	21353129	X_21353129_SNP [dm3] X_21482102_SNP [dm6]	A	G	2.107e^-5	0.626	UPSTREAM CR45510 DOWNSTREAM CR45511 INTERGENIC
2L	18955312	2L_18955312_DEL [dm3] 2L_18955312_DEL [dm6]	AA	A	2.124e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	18955324	2L_18955324_SNP [dm3] 2L_18955324_SNP [dm6]	G	T	2.126e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	16666693	2R_16666693_SNP [dm3] 2R_20779188_SNP [dm6]	A	G	2.133e^-5	0.626	SYNONYMOUS_CODING CG43711
3R	22136677	3R_22136677_SNP [dm3] 3R_26310955_SNP [dm6]	A	T	2.288e^-5	0.626	INTERGENIC
2R	1737954	2R_1737954_SNP [dm3] 2R_5850449_SNP [dm6]	C	T	2.338e^-5	0.626	INTRON dpr12
2R	4301411	2R_4301411_SNP [dm3] 2R_8413906_SNP [dm6]	C	G	2.461e^-5	0.626	INTERGENIC
2R	17089857	2R_17089857_SNP [dm3] 2R_21202352_SNP [dm6]	A	C	2.526e^-5	0.626	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	21353374	X_21353374_SNP [dm3] X_21482347_SNP [dm6]	A	G	2.665e^-5	0.626	DOWNSTREAM CR45511 INTERGENIC
X	21353182	X_21353182_INS [dm3] X_21482155_INS [dm6]	C	CTGCGTCTTTGTCTCTAGAA...	2.748e^-5	0.626	DOWNSTREAM CR45511 INTERGENIC
3R	21457267	3R_21457267_SNP [dm3] 3R_25631545_SNP [dm6]	G	A	2.807e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21353413	X_21353413_SNP [dm3] X_21482386_SNP [dm6]	A	G	2.868e^-5	0.626	DOWNSTREAM CR45511 INTERGENIC
2R	6999236	2R_6999236_SNP [dm3] 2R_11111731_SNP [dm6]	A	T	2.894e^-5	0.626	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11117578	3L_11117578_SNP [dm3] 3L_11124478_SNP [dm6]	T	G	2.930e^-5	0.626	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	7016080	2R_7016080_SNP [dm3] 2R_11128575_SNP [dm6]	C	A	2.939e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4631968	3R_4631968_SNP [dm3] 3R_8806246_SNP [dm6]	T	C	2.942e^-5	0.626	UPSTREAM hng2 & 1 other DOWNSTREAM Tcp-1eta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	89612	2R_89612_SNP [dm3] 2R_4202107_SNP [dm6]	G	T	2.945e^-5	0.626	INTERGENIC
2L	9092538	2L_9092538_SNP [dm3] 2L_9092538_SNP [dm6]	C	T	3.076e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	9090547	2L_9090547_SNP [dm3] 2L_9090547_SNP [dm6]	C	T	3.089e^-5	0.626	INTERGENIC
3L	9617491	3L_9617491_SNP [dm3] 3L_9624391_SNP [dm6]	T	A	3.137e^-5	0.626	DOWNSTREAM LanB2 INTRON CG3335
3R	22312913	3R_22312913_INS [dm3] 3R_26487191_INS [dm6]	T	TCT	3.162e^-5	0.626	INTRON plum	TF binding site mE1_TFBS_inv
2L	10586705	2L_10586705_SNP [dm3] 2L_10586705_SNP [dm6]	T	C	3.208e^-5	0.626	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1501244	2L_1501244_SNP [dm3] 2L_1501244_SNP [dm6]	G	T	3.274e^-5	0.626	NON_SYNONYMOUS_CODING CG7420 UPSTREAM CG18131 EXON CR44064
2R	17089852	2R_17089852_SNP [dm3] 2R_21202347_SNP [dm6]	A	T	3.282e^-5	0.626	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	773298	2L_773298_SNP [dm3] 2L_773298_SNP [dm6]	G	T	3.338e^-5	0.626	UPSTREAM CG12506 DOWNSTREAM CR44614 INTERGENIC
3L	1670311	3L_1670311_SNP [dm3] 3L_1670311_SNP [dm6]	C	T	3.348e^-5	0.626	UPSTREAM RabX5 DOWNSTREAM CG13930 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11868532	2L_11868532_SNP [dm3] 2L_11868532_SNP [dm6]	A	G	3.367e^-5	0.626	INTRON Pde1c
X	3485383	X_3485383_SNP [dm3] X_3591350_SNP [dm6]	T	A	3.368e^-5	0.626	INTRON AstA-R1
X	5380042	X_5380042_SNP [dm3] X_5486009_SNP [dm6]	A	T	3.386e^-5	0.626	INTRON SPR
2L	18955315	2L_18955315_SNP [dm3] 2L_18955315_SNP [dm6]	A	T	3.404e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	18955317	2L_18955317_DEL [dm3] 2L_18955317_DEL [dm6]	TA	T	3.404e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3L	12641483	3L_12641483_SNP [dm3] 3L_12648383_SNP [dm6]	G	C	3.488e^-5	0.626	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	4102943	X_4102943_SNP [dm3] X_4208910_SNP [dm6]	T	A	3.550e^-5	0.626	INTERGENIC
2L	9090506	2L_9090506_SNP [dm3] 2L_9090506_SNP [dm6]	A	G	3.561e^-5	0.626	INTERGENIC
2L	960188	2L_960188_SNP [dm3] 2L_960188_SNP [dm6]	A	C	3.571e^-5	0.626	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17560453	3R_17560453_SNP [dm3] 3R_21734731_SNP [dm6]	G	T	3.588e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8531246	2L_8531246_SNP [dm3] 2L_8531246_SNP [dm6]	A	T	3.657e^-5	0.626	INTRON CG17834
X	4983768	X_4983768_SNP [dm3] X_5089735_SNP [dm6]	A	G	3.681e^-5	0.626	START_GAINED rg & 1 other UTR_5_PRIME rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3563598	3L_3563598_SNP [dm3] 3L_3563598_SNP [dm6]	A	G	3.697e^-5	0.626	INTRON Eip63E
3L	18332348	3L_18332348_SNP [dm3] 3L_18339248_SNP [dm6]	A	G	3.704e^-5	0.626	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9753242	2L_9753242_SNP [dm3] 2L_9753242_SNP [dm6]	G	A	3.784e^-5	0.626	INTERGENIC
2R	17087653	2R_17087653_SNP [dm3] 2R_21200148_SNP [dm6]	T	C	3.869e^-5	0.626	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	18117881	2R_18117881_MNP [dm3] 2R_22230376_MNP [dm6]	AGG	CAC	3.875e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26937747	3R_26937747_SNP [dm3] 3R_31112025_SNP [dm6]	G	A	3.893e^-5	0.626	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16667934	2R_16667934_SNP [dm3] 2R_20780429_SNP [dm6]	A	G	3.981e^-5	0.626	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3563761	3L_3563761_DEL [dm3] 3L_3563761_DEL [dm6]	GATGAT	TTC	4.029e^-5	0.626	INTRON Eip63E
2R	14386443	2R_14386443_SNP [dm3] 2R_18498938_SNP [dm6]	A	G	4.129e^-5	0.626	UPSTREAM CG30116 INTERGENIC
2L	18955305	2L_18955305_SNP [dm3] 2L_18955305_SNP [dm6]	G	A	4.158e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	10639633	2L_10639633_SNP [dm3] 2L_10639633_SNP [dm6]	T	A	4.170e^-5	0.626	UPSTREAM CG31872 DOWNSTREAM CR45351 INTERGENIC
2L	10639634	2L_10639634_SNP [dm3] 2L_10639634_SNP [dm6]	T	C	4.170e^-5	0.626	UPSTREAM CG31872 DOWNSTREAM CR45351 INTERGENIC
2R	17089819	2R_17089819_SNP [dm3] 2R_21202314_SNP [dm6]	A	G	4.176e^-5	0.626	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7016084	2R_7016084_SNP [dm3] 2R_11128579_SNP [dm6]	G	A	4.195e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8328551	3L_8328551_SNP [dm3] 3L_8335451_SNP [dm6]	T	C	4.220e^-5	0.626	INTERGENIC
2L	1035902	2L_1035902_INS [dm3] 2L_1035902_INS [dm6]	G	GCTCGGTT	4.289e^-5	0.626	INTRON IA-2
3R	22312917	3R_22312917_SNP [dm3] 3R_26487195_SNP [dm6]	C	T	4.426e^-5	0.626	INTRON plum	TF binding site mE1_TFBS_inv
3L	5842249	3L_5842249_SNP [dm3] 3L_5849149_SNP [dm6]	C	T	4.431e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	14441817	X_14441817_SNP [dm3] X_14547784_SNP [dm6]	A	G	4.549e^-5	0.626	INTERGENIC
2L	13574841	2L_13574841_SNP [dm3] 2L_13574841_SNP [dm6]	A	C	4.569e^-5	0.626	INTRON kuz
3L	1927674	3L_1927674_SNP [dm3] 3L_1927674_SNP [dm6]	T	C	4.569e^-5	0.626	INTRON Dbx	TF binding site mE1_TFBS_chinmo
2L	18955302	2L_18955302_SNP [dm3] 2L_18955302_SNP [dm6]	C	A	4.623e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	6921847	2R_6921847_SNP [dm3] 2R_11034342_SNP [dm6]	A	C	4.626e^-5	0.626	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	21353249	X_21353249_SNP [dm3] X_21482222_SNP [dm6]	A	T	4.629e^-5	0.626	DOWNSTREAM CR45511 INTERGENIC
X	3458743	X_3458743_SNP [dm3] X_3564710_SNP [dm6]	C	A	4.635e^-5	0.626	INTRON CG32791 & 1 other
3L	2055449	3L_2055449_SNP [dm3] 3L_2055449_SNP [dm6]	A	C	4.686e^-5	0.626	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
2L	18955229	2L_18955229_SNP [dm3] 2L_18955229_SNP [dm6]	A	C	4.704e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3L	13241870	3L_13241870_SNP [dm3] 3L_13248770_SNP [dm6]	G	A	4.767e^-5	0.626	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
3L	11264515	3L_11264515_SNP [dm3] 3L_11271415_SNP [dm6]	T	C	4.769e^-5	0.626	INTERGENIC
2R	16667923	2R_16667923_SNP [dm3] 2R_20780418_SNP [dm6]	T	A	4.772e^-5	0.626	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24278869	3R_24278869_SNP [dm3] 3R_28453147_SNP [dm6]	C	T	4.877e^-5	0.626	INTRON beat-VI
2L	18955242	2L_18955242_DEL [dm3] 2L_18955242_DEL [dm6]	TTTTAAAAATGCGGTATGA...	CC	4.880e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	17089871	2R_17089871_SNP [dm3] 2R_21202366_SNP [dm6]	A	T	4.890e^-5	0.626	UPSTREAM Glycogenin INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16667689	2R_16667689_SNP [dm3] 2R_20780184_SNP [dm6]	G	T	4.922e^-5	0.626	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
2L	18955277	2L_18955277_SNP [dm3] 2L_18955277_SNP [dm6]	G	T	4.975e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	20141589	2L_20141589_SNP [dm3] 2L_20141589_SNP [dm6]	G	A	5.041e^-5	0.626	INTERGENIC
3L	13080624	3L_13080624_SNP [dm3] 3L_13087524_SNP [dm6]	A	G	5.106e^-5	0.626	UPSTREAM CG17300 EXON CR45749
2L	18955274	2L_18955274_SNP [dm3] 2L_18955274_SNP [dm6]	T	C	5.108e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	10552882	2L_10552882_SNP [dm3] 2L_10552882_SNP [dm6]	T	C	5.125e^-5	0.626	INTRON Trim9	TF binding site mE1_TFBS_HSA
2R	6994479	2R_6994479_SNP [dm3] 2R_11106974_SNP [dm6]	T	C	5.127e^-5	0.626	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	21353237	X_21353237_SNP [dm3] X_21482210_SNP [dm6]	C	G	5.162e^-5	0.626	DOWNSTREAM CR45511 INTERGENIC
X	11912608	X_11912608_SNP [dm3] X_12018575_SNP [dm6]	T	C	5.182e^-5	0.626	UPSTREAM CG15735 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
2R	18599219	2R_18599219_SNP [dm3] 2R_22711714_SNP [dm6]	C	T	5.230e^-5	0.626	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275 UPSTREAM CG30268
2L	7297909	2L_7297909_DEL [dm3] 2L_7297909_DEL [dm6]	AA	A	5.239e^-5	0.626	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	8026278	3L_8026278_SNP [dm3] 3L_8033178_SNP [dm6]	T	C	5.252e^-5	0.626	INTRON nmo
X	21353347	X_21353347_SNP [dm3] X_21482320_SNP [dm6]	T	A	5.254e^-5	0.626	DOWNSTREAM CR45511 INTERGENIC
X	21353349	X_21353349_SNP [dm3] X_21482322_SNP [dm6]	C	T	5.254e^-5	0.626	DOWNSTREAM CR45511 INTERGENIC
2L	18955297	2L_18955297_DEL [dm3] 2L_18955297_DEL [dm6]	AAAG	CTT	5.276e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3R	11566531	3R_11566531_SNP [dm3] 3R_15740809_SNP [dm6]	G	T	5.353e^-5	0.626	INTERGENIC
3R	24974112	3R_24974112_SNP [dm3] 3R_29148390_SNP [dm6]	G	A	5.443e^-5	0.626	UTR_5_PRIME Pglym78 UPSTREAM CG11882	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	25807641	3R_25807641_DEL [dm3] 3R_29981919_DEL [dm6]	CTCTAAGGC	C	5.478e^-5	0.626	INTERGENIC
2L	18482259	2L_18482259_SNP [dm3] 2L_18482259_SNP [dm6]	A	C	5.489e^-5	0.626	INTRON CG10283	TF binding site BDTNP1_TFBS_da
X	21353150	X_21353150_SNP [dm3] X_21482123_SNP [dm6]	T	G	5.555e^-5	0.626	UPSTREAM CR45510 DOWNSTREAM CR45511 INTERGENIC
2L	18955308	2L_18955308_DEL [dm3] 2L_18955308_DEL [dm6]	CC	C	5.578e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	18955225	2L_18955225_SNP [dm3] 2L_18955225_SNP [dm6]	C	T	5.586e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
X	3891955	X_3891955_SNP [dm3] X_3997922_SNP [dm6]	T	C	5.654e^-5	0.626	INTERGENIC
2L	5871488	2L_5871488_SNP [dm3] 2L_5871488_SNP [dm6]	G	A	5.698e^-5	0.626	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	1047877	2L_1047877_SNP [dm3] 2L_1047877_SNP [dm6]	T	C	5.707e^-5	0.626	INTRON IA-2	TF binding site mE1_TFBS_cad
X	12730510	X_12730510_SNP [dm3] X_12836477_SNP [dm6]	C	A	5.732e^-5	0.626	INTRON Pde9
3L	906535	3L_906535_SNP [dm3] 3L_906535_SNP [dm6]	C	G	5.768e^-5	0.626	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22135453	3R_22135453_SNP [dm3] 3R_26309731_SNP [dm6]	G	C	5.784e^-5	0.626	INTERGENIC
3L	13241786	3L_13241786_SNP [dm3] 3L_13248686_SNP [dm6]	G	C	5.785e^-5	0.626	UTR_5_PRIME CG32119 UPSTREAM tRNA:D2:69F INTRON caps
2R	20435900	2R_20435900_SNP [dm3] 2R_24548377_SNP [dm6]	C	G	5.797e^-5	0.626	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18443590	2R_18443590_SNP [dm3] 2R_22556085_SNP [dm6]	G	A	5.807e^-5	0.626	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22311636	2L_22311636_SNP [dm3] 2L_22311636_SNP [dm6]	G	A	5.821e^-5	0.626	UPSTREAM CG17018 INTRON CG17018	transposable element FlyBase
2L	18482252	2L_18482252_SNP [dm3] 2L_18482252_SNP [dm6]	T	G	5.857e^-5	0.626	INTRON CG10283	TF binding site BDTNP1_TFBS_da
2R	28163	2R_28163_SNP [dm3] 2R_4140658_SNP [dm6]	A	G	5.905e^-5	0.626	INTERGENIC
2R	16667773	2R_16667773_SNP [dm3] 2R_20780268_SNP [dm6]	T	G	5.918e^-5	0.626	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC	TF binding site mE1_TFBS_sens
2L	11783246	2L_11783246_SNP [dm3] 2L_11783246_SNP [dm6]	T	C	6.183e^-5	0.626	INTERGENIC
X	5380048	X_5380048_SNP [dm3] X_5486015_SNP [dm6]	C	T	6.236e^-5	0.626	INTRON SPR
3L	12647629	3L_12647629_SNP [dm3] 3L_12654529_SNP [dm6]	T	C	6.269e^-5	0.626	INTERGENIC
2L	18955262	2L_18955262_SNP [dm3] 2L_18955262_SNP [dm6]	G	C	6.345e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	18955268	2L_18955268_DEL [dm3] 2L_18955268_DEL [dm6]	AAAAA	A	6.345e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	13725391	2R_13725391_SNP [dm3] 2R_17837886_SNP [dm6]	C	T	6.396e^-5	0.626	INTRON grh	TF binding site BDTNP1_TFBS_da
3L	12647311	3L_12647311_SNP [dm3] 3L_12654211_SNP [dm6]	A	G	6.437e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16615285	X_16615285_SNP [dm3] X_16721252_SNP [dm6]	C	T	6.438e^-5	0.626	UTR_5_PRIME CG32572 & 1 other
2L	18955326	2L_18955326_SNP [dm3] 2L_18955326_SNP [dm6]	A	C	6.476e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	17089742	2R_17089742_SNP [dm3] 2R_21202237_SNP [dm6]	A	T	6.476e^-5	0.626	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12324563	2L_12324563_SNP [dm3] 2L_12324563_SNP [dm6]	A	T	6.477e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	16666838	2R_16666838_SNP [dm3] 2R_20779333_SNP [dm6]	C	T	6.493e^-5	0.626	NON_SYNONYMOUS_CODING CG43711 DOWNSTREAM CR44666
2R	16666843	2R_16666843_SNP [dm3] 2R_20779338_SNP [dm6]	G	A	6.571e^-5	0.626	SYNONYMOUS_CODING CG43711 DOWNSTREAM CR44666
3R	19747562	3R_19747562_SNP [dm3] 3R_23921840_SNP [dm6]	C	A	6.572e^-5	0.626	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	13680364	2L_13680364_SNP [dm3] 2L_13680364_SNP [dm6]	T	C	6.573e^-5	0.626	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2L	18436288	2L_18436288_SNP [dm3] 2L_18436288_SNP [dm6]	T	G	6.591e^-5	0.626	INTERGENIC
3R	25878785	3R_25878785_SNP [dm3] 3R_30053063_SNP [dm6]	T	C	6.618e^-5	0.626	SYNONYMOUS_CODING CG7946 UPSTREAM CG15528 DOWNSTREAM CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1282686	3L_1282686_SNP [dm3] 3L_1282686_SNP [dm6]	C	T	6.619e^-5	0.626	INTRON CG32333
2L	13680366	2L_13680366_SNP [dm3] 2L_13680366_SNP [dm6]	C	G	6.654e^-5	0.626	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
3L	11116986	3L_11116986_SNP [dm3] 3L_11123886_SNP [dm6]	A	C	6.709e^-5	0.626	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6824083	3L_6824083_SNP [dm3] 3L_6830983_SNP [dm6]	G	T	6.711e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	18536035	3R_18536035_SNP [dm3] 3R_22710313_SNP [dm6]	C	A	6.713e^-5	0.626	SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6995561	2R_6995561_SNP [dm3] 2R_11108056_SNP [dm6]	G	T	6.729e^-5	0.626	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	952573	2L_952573_SNP [dm3] 2L_952573_SNP [dm6]	T	C	6.831e^-5	0.626	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9757497	2L_9757497_SNP [dm3] 2L_9757497_SNP [dm6]	G	T	6.831e^-5	0.626	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_run
2L	18955382	2L_18955382_DEL [dm3] 2L_18955382_DEL [dm6]	GTA	C	6.921e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18955389	2L_18955389_SNP [dm3] 2L_18955389_SNP [dm6]	G	T	6.921e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18955391	2L_18955391_MNP [dm3] 2L_18955391_MNP [dm6]	GAT	TCG	6.921e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18955396	2L_18955396_DEL [dm3] 2L_18955396_DEL [dm6]	GA	G	6.921e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18955290	2L_18955290_SNP [dm3] 2L_18955290_SNP [dm6]	T	A	6.967e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3L	7866714	3L_7866714_SNP [dm3] 3L_7873614_SNP [dm6]	C	G	6.974e^-5	0.626	INTRON CG32365
2L	18955265	2L_18955265_SNP [dm3] 2L_18955265_SNP [dm6]	C	T	7.000e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	18955280	2L_18955280_SNP [dm3] 2L_18955280_SNP [dm6]	A	T	7.000e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3L	5860146	3L_5860146_SNP [dm3] 3L_5867046_SNP [dm6]	C	T	7.009e^-5	0.626	INTERGENIC
2R	7082479	2R_7082479_SNP [dm3] 2R_11194974_SNP [dm6]	G	A	7.036e^-5	0.626	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18955355	2L_18955355_SNP [dm3] 2L_18955355_SNP [dm6]	C	T	7.038e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3R	23564993	3R_23564993_SNP [dm3] 3R_27739271_SNP [dm6]	A	G	7.043e^-5	0.626	INTRON Ets98B
X	22293784	X_22293784_SNP [dm3] X_22891948_SNP [dm6]	A	G	7.045e^-5	0.626	INTERGENIC
2R	17098670	2R_17098670_SNP [dm3] 2R_21211165_SNP [dm6]	A	G	7.069e^-5	0.626	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3L	3051706	3L_3051706_SNP [dm3] 3L_3051706_SNP [dm6]	T	C	7.083e^-5	0.626	UTR_3_PRIME CG32485 UPSTREAM CG1271	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	903649	3L_903649_SNP [dm3] 3L_903649_SNP [dm6]	T	C	7.104e^-5	0.626	UTR_3_PRIME CG13905	TF binding site BDTNP1_TFBS_twi
2R	13707680	2R_13707680_SNP [dm3] 2R_17820175_SNP [dm6]	G	A	7.116e^-5	0.626	INTRON grh	transposable element FlyBase
2R	20819	2R_20819_SNP [dm3] 2R_4133314_SNP [dm6]	A	G	7.143e^-5	0.626	UTR_3_PRIME CG17683 DOWNSTREAM CG17683
2L	9753268	2L_9753268_SNP [dm3] 2L_9753268_SNP [dm6]	A	G	7.146e^-5	0.626	INTERGENIC
3L	1672377	3L_1672377_SNP [dm3] 3L_1672377_SNP [dm6]	G	A	7.177e^-5	0.626	SYNONYMOUS_CODING CG13930	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13725041	2R_13725041_SNP [dm3] 2R_17837536_SNP [dm6]	G	A	7.205e^-5	0.626	INTRON grh
3L	5841774	3L_5841774_SNP [dm3] 3L_5848674_SNP [dm6]	G	A	7.221e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	16667884	2R_16667884_SNP [dm3] 2R_20780379_SNP [dm6]	A	G	7.254e^-5	0.626	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18955352	2L_18955352_DEL [dm3] 2L_18955352_DEL [dm6]	GT	G	7.258e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	14200352	2L_14200352_SNP [dm3] 2L_14200352_SNP [dm6]	T	C	7.350e^-5	0.626	INTRON Dyrk2
2L	9784495	2L_9784495_SNP [dm3] 2L_9784495_SNP [dm6]	T	C	7.405e^-5	0.626	INTRON IP3K1
2R	14289316	2R_14289316_SNP [dm3] 2R_18401811_SNP [dm6]	T	C	7.417e^-5	0.626	UPSTREAM CR43687 & 1 other DOWNSTREAM GstE3 INTERGENIC	TF binding site mE1_TFBS_sbb mE1_TFBS_Trl
2R	6892569	2R_6892569_SNP [dm3] 2R_11005064_SNP [dm6]	A	G	7.429e^-5	0.626	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	905161	3L_905161_SNP [dm3] 3L_905161_SNP [dm6]	A	T	7.449e^-5	0.626	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18955234	2L_18955234_SNP [dm3] 2L_18955234_SNP [dm6]	A	T	7.464e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3L	5844991	3L_5844991_SNP [dm3] 3L_5851891_SNP [dm6]	A	G	7.481e^-5	0.626	INTERGENIC
3L	18328264	3L_18328264_SNP [dm3] 3L_18335164_SNP [dm6]	G	C	7.518e^-5	0.626	INTERGENIC
3L	5844969	3L_5844969_DEL [dm3] 3L_5851869_DEL [dm6]	TATTACAT	T	7.551e^-5	0.626	INTERGENIC
2R	6995562	2R_6995562_SNP [dm3] 2R_11108057_SNP [dm6]	G	T	7.563e^-5	0.626	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6257150	X_6257150_SNP [dm3] X_6363117_SNP [dm6]	C	T	7.618e^-5	0.626	UPSTREAM swaPsi DOWNSTREAM swa EXON swaPsi	TF binding site mE1_TFBS_inv
2R	7003771	2R_7003771_SNP [dm3] 2R_11116266_SNP [dm6]	A	G	7.622e^-5	0.626	UTR_5_PRIME luna DOWNSTREAM Cyp12d1-p	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8022396	3L_8022396_SNP [dm3] 3L_8029296_SNP [dm6]	C	A	7.679e^-5	0.626	UPSTREAM tRNA:CR32370 INTRON nmo	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	16977753	3R_16977753_SNP [dm3] 3R_21152031_SNP [dm6]	A	G	7.701e^-5	0.626	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
3L	5845004	3L_5845004_SNP [dm3] 3L_5851904_SNP [dm6]	T	A	7.717e^-5	0.626	INTERGENIC
2L	18955399	2L_18955399_MNP [dm3] 2L_18955399_MNP [dm6]	TTG	AGA	7.778e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9089814	2L_9089814_SNP [dm3] 2L_9089814_SNP [dm6]	T	G	7.782e^-5	0.626	DOWNSTREAM Toll-4 INTERGENIC
2R	16205977	2R_16205977_SNP [dm3] 2R_20318472_SNP [dm6]	A	T	7.840e^-5	0.626	SYNONYMOUS_CODING CG13871 UPSTREAM CG8920	TF binding site mE1_TFBS_cad
3L	7796382	3L_7796382_SNP [dm3] 3L_7803282_SNP [dm6]	G	A	7.865e^-5	0.626	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16954085	2R_16954085_SNP [dm3] 2R_21066580_SNP [dm6]	T	G	7.907e^-5	0.626	SYNONYMOUS_CODING Cht4	TF binding site mE1_TFBS_cad
3L	5844968	3L_5844968_SNP [dm3] 3L_5851868_SNP [dm6]	A	T	7.981e^-5	0.626	INTERGENIC
2R	6741926	2R_6741926_SNP [dm3] 2R_10854421_SNP [dm6]	C	T	7.995e^-5	0.626	UPSTREAM CG30015 INTRON CG30015 EXON CR45136
2R	4367758	2R_4367758_SNP [dm3] 2R_8480253_SNP [dm6]	T	C	8.025e^-5	0.626	SYNONYMOUS_CODING mtt	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	21353156	X_21353156_SNP [dm3] X_21482129_SNP [dm6]	T	G	8.074e^-5	0.626	DOWNSTREAM CR45511 INTERGENIC
X	14075517	X_14075517_SNP [dm3] X_14181484_SNP [dm6]	C	T	8.077e^-5	0.626	NON_SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo
3R	11079525	3R_11079525_SNP [dm3] 3R_15253803_SNP [dm6]	C	T	8.084e^-5	0.626	SYNONYMOUS_CODING CG42404 UTR_3_PRIME CG42404	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21353170	X_21353170_SNP [dm3] X_21482143_SNP [dm6]	T	A	8.127e^-5	0.626	DOWNSTREAM CR45511 INTERGENIC
3L	22996151	3L_22996151_SNP [dm3] 3L_23003051_SNP [dm6]	T	C	8.193e^-5	0.626	INTRON nrm	TF binding site BDTNP1_TFBS_dl
2L	11322582	2L_11322582_SNP [dm3] 2L_11322582_SNP [dm6]	C	T	8.231e^-5	0.626	INTERGENIC
2L	18955364	2L_18955364_MNP [dm3] 2L_18955364_MNP [dm6]	GTT	AAA	8.239e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18955367	2L_18955367_DEL [dm3] 2L_18955367_DEL [dm6]	TGCC	T	8.239e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
X	11777311	X_11777311_SNP [dm3] X_11883278_SNP [dm6]	G	A	8.251e^-5	0.626	SYNONYMOUS_CODING CG10353
3R	9783686	3R_9783686_SNP [dm3] 3R_13957964_SNP [dm6]	A	T	8.274e^-5	0.626	UPSTREAM Ipp INTERGENIC	TF binding site mE1_TFBS_cad
3L	22697835	3L_22697835_SNP [dm3] 3L_22704735_SNP [dm6]	G	T	8.279e^-5	0.626	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18955379	2L_18955379_SNP [dm3] 2L_18955379_SNP [dm6]	T	G	8.279e^-5	0.626	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16064247	3R_16064247_DEL [dm3] 3R_20238525_DEL [dm6]	CT	C	8.354e^-5	0.628	INTRON Nlg4
2R	10524140	2R_10524140_SNP [dm3] 2R_14636635_SNP [dm6]	C	T	8.397e^-5	0.628	INTERGENIC
2L	10639556	2L_10639556_DEL [dm3] 2L_10639556_DEL [dm6]	AA	A	8.419e^-5	0.628	UPSTREAM CG31872 EXON CR45351
3L	5835269	3L_5835269_SNP [dm3] 3L_5842169_SNP [dm6]	G	C	8.548e^-5	0.628	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22079879	2L_22079879_SNP [dm3] 2L_22079879_SNP [dm6]	G	A	8.579e^-5	0.628	SYNONYMOUS_CODING ttm3
2L	13099164	2L_13099164_SNP [dm3] 2L_13099164_SNP [dm6]	A	C	8.611e^-5	0.628	INTERGENIC
2L	6832674	2L_6832674_DEL [dm3] 2L_6832674_DEL [dm6]	TAATAAGA	T	8.734e^-5	0.628	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6832728	2L_6832728_SNP [dm3] 2L_6832728_SNP [dm6]	T	A	8.734e^-5	0.628	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6832740	2L_6832740_SNP [dm3] 2L_6832740_SNP [dm6]	T	A	8.734e^-5	0.628	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5404049	3L_5404049_SNP [dm3] 3L_5410949_SNP [dm6]	G	A	8.776e^-5	0.628	INTERGENIC
2L	10092579	2L_10092579_SNP [dm3] 2L_10092579_SNP [dm6]	C	T	8.843e^-5	0.628	UPSTREAM CG13133 INTRON CG44153
3R	16965515	3R_16965515_SNP [dm3] 3R_21139793_SNP [dm6]	T	C	8.894e^-5	0.628	SYNONYMOUS_CODING meigo UPSTREAM SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18955276	2L_18955276_SNP [dm3] 2L_18955276_SNP [dm6]	T	C	8.899e^-5	0.628	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3L	5844890	3L_5844890_SNP [dm3] 3L_5851790_SNP [dm6]	C	A	8.935e^-5	0.628	INTERGENIC
2R	9897963	2R_9897963_SNP [dm3] 2R_14010458_SNP [dm6]	T	C	8.941e^-5	0.628	UTR_5_PRIME mam	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6994881	2R_6994881_INS [dm3] 2R_11107376_INS [dm6]	T	TTT	8.982e^-5	0.628	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13765949	2R_13765949_SNP [dm3] 2R_17878444_SNP [dm6]	G	A	9.007e^-5	0.628	NON_SYNONYMOUS_CODING CG30325 INTRON Elk
2L	18955286	2L_18955286_MNP [dm3] 2L_18955286_MNP [dm6]	TTC	CCT	9.033e^-5	0.628	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3R	21030869	3R_21030869_SNP [dm3] 3R_25205147_SNP [dm6]	C	T	9.066e^-5	0.628	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
2L	6077840	2L_6077840_SNP [dm3] 2L_6077840_SNP [dm6]	A	G	9.134e^-5	0.628	UPSTREAM CR9162 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	5958819	X_5958819_SNP [dm3] X_6064786_SNP [dm6]	A	G	9.167e^-5	0.628	UTR_3_PRIME CG5921 DOWNSTREAM CG5921 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18155487	2R_18155487_INS [dm3] 2R_22267982_INS [dm6]	T	TCT	9.241e^-5	0.628	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	4770760	2L_4770760_SNP [dm3] 2L_4770760_SNP [dm6]	A	T	9.259e^-5	0.628	INTRON CG15630
3L	7535710	3L_7535710_SNP [dm3] 3L_7542610_SNP [dm6]	T	A	9.270e^-5	0.628	UPSTREAM CG32376 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18955350	2L_18955350_SNP [dm3] 2L_18955350_SNP [dm6]	G	T	9.274e^-5	0.628	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	11126864	2L_11126864_SNP [dm3] 2L_11126864_SNP [dm6]	A	T	9.310e^-5	0.628	INTRON Nup160
3L	5844985	3L_5844985_SNP [dm3] 3L_5851885_SNP [dm6]	A	G	9.323e^-5	0.628	INTERGENIC
X	21353571	X_21353571_SNP [dm3] X_21482544_SNP [dm6]	A	T	9.343e^-5	0.628	DOWNSTREAM CR45511 INTERGENIC
2L	6832735	2L_6832735_SNP [dm3] 2L_6832735_SNP [dm6]	T	G	9.357e^-5	0.628	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19790341	2R_19790341_SNP [dm3] 2R_23902818_SNP [dm6]	A	G	9.413e^-5	0.628	SYNONYMOUS_CODING Lpt UPSTREAM CG13562
2L	11435288	2L_11435288_SNP [dm3] 2L_11435288_SNP [dm6]	A	G	9.418e^-5	0.628	UTR_3_PRIME salm
X	11912368	X_11912368_SNP [dm3] X_12018335_SNP [dm6]	A	C	9.445e^-5	0.628	UPSTREAM CG15735 & 1 other DOWNSTREAM regucalcin INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
3L	12080394	3L_12080394_SNP [dm3] 3L_12087294_SNP [dm6]	T	A	9.497e^-5	0.628	INTERGENIC
3L	10783106	3L_10783106_INS [dm3] 3L_10790006_INS [dm6]	A	ACAAATTCAATTAAAAAAA...	9.538e^-5	0.628	DOWNSTREAM CR44545 INTERGENIC
3L	5844855	3L_5844855_SNP [dm3] 3L_5851755_SNP [dm6]	T	A	9.577e^-5	0.628	INTERGENIC
3R	10913525	3R_10913525_SNP [dm3] 3R_15087803_SNP [dm6]	A	T	9.584e^-5	0.628	INTRON CG6966
3L	5845002	3L_5845002_SNP [dm3] 3L_5851902_SNP [dm6]	T	G	9.586e^-5	0.628	INTERGENIC
X	3816716	X_3816716_SNP [dm3] X_3922683_SNP [dm6]	G	A	9.604e^-5	0.628	INTRON CG42541
3R	16678277	3R_16678277_SNP [dm3] 3R_20852555_SNP [dm6]	G	A	9.670e^-5	0.628	SYNONYMOUS_CODING Ir93a DOWNSTREAM mir-1011
2L	15005912	2L_15005912_SNP [dm3] 2L_15005912_SNP [dm6]	A	T	9.674e^-5	0.628	DOWNSTREAM l_2_35Be INTRON dyn-p25	TF binding site BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6253923	3R_6253923_INS [dm3] 3R_10428201_INS [dm6]	T	TAT	9.731e^-5	0.628	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18705499	2R_18705499_SNP [dm3] 2R_22817994_SNP [dm6]	T	A	9.740e^-5	0.628	UPSTREAM CG30271 INTRON CG30271
2L	18955362	2L_18955362_SNP [dm3] 2L_18955362_SNP [dm6]	G	A	9.765e^-5	0.628	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5134818	2L_5134818_SNP [dm3] 2L_5134818_SNP [dm6]	C	T	9.784e^-5	0.628	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	8323084	3L_8323084_SNP [dm3] 3L_8329984_SNP [dm6]	A	C	9.929e^-5	0.632	SYNONYMOUS_CODING CG34462
X	6728231	X_6728231_SNP [dm3] X_6834198_SNP [dm6]	C	T	9.954e^-5	0.632	INTRON nonC	TF binding site mE1_TFBS_cad
2L	16895293	2L_16895293_SNP [dm3] 2L_16895293_SNP [dm6]	T	C	1.000e^-4	0.632	SYNONYMOUS_CODING tweek
3L	5844980	3L_5844980_SNP [dm3] 3L_5851880_SNP [dm6]	T	C	1.003e^-4	0.632	INTERGENIC
3L	5844988	3L_5844988_SNP [dm3] 3L_5851888_SNP [dm6]	C	T	1.003e^-4	0.632	INTERGENIC
3L	16819814	3L_16819814_SNP [dm3] 3L_16826714_SNP [dm6]	G	T	1.004e^-4	0.632	INTRON CG13024
3R	8062927	3R_8062927_SNP [dm3] 3R_12237205_SNP [dm6]	C	G	1.016e^-4	0.633	UTR_3_PRIME Cyp313a3 UPSTREAM Cyp313a2
3L	7535717	3L_7535717_SNP [dm3] 3L_7542617_SNP [dm6]	C	T	1.017e^-4	0.633	UPSTREAM CG32376 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18803821	3R_18803821_SNP [dm3] 3R_22978099_SNP [dm6]	A	G	1.026e^-4	0.633	UTR_3_PRIME CG17244 DOWNSTREAM CG17244
3R	11073068	3R_11073068_SNP [dm3] 3R_15247346_SNP [dm6]	A	G	1.034e^-4	0.633	SYNONYMOUS_CODING CG6499 DOWNSTREAM Hsc70-4	TF binding site mE1_TFBS_cad
3L	1283295	3L_1283295_SNP [dm3] 3L_1283295_SNP [dm6]	G	A	1.039e^-4	0.633	INTRON CG32333
2R	15702247	2R_15702247_SNP [dm3] 2R_19814742_SNP [dm6]	G	A	1.041e^-4	0.633	UPSTREAM Obp56h INTERGENIC	regulatory region REDfly_CRMs
3R	15905117	3R_15905117_SNP [dm3] 3R_20079395_SNP [dm6]	C	A	1.042e^-4	0.633	INTERGENIC
2L	9780396	2L_9780396_SNP [dm3] 2L_9780396_SNP [dm6]	G	A	1.043e^-4	0.633	INTERGENIC
2R	16670126	2R_16670126_SNP [dm3] 2R_20782621_SNP [dm6]	G	A	1.057e^-4	0.633	INTERGENIC	TF binding site mE1_TFBS_sens
2R	1728158	2R_1728158_SNP [dm3] 2R_5840653_SNP [dm6]	G	A	1.060e^-4	0.633	INTRON dpr12
2L	22311481	2L_22311481_SNP [dm3] 2L_22311481_SNP [dm6]	C	A	1.062e^-4	0.633	UPSTREAM CG17018 INTRON CG17018	transposable element FlyBase
3L	1381382	3L_1381382_SNP [dm3] 3L_1381382_SNP [dm6]	C	A	1.067e^-4	0.633	DOWNSTREAM tRNA:CR32329 INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18955388	2L_18955388_SNP [dm3] 2L_18955388_SNP [dm6]	A	C	1.068e^-4	0.633	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19747559	3R_19747559_SNP [dm3] 3R_23921837_SNP [dm6]	C	T	1.073e^-4	0.633	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7535288	3L_7535288_SNP [dm3] 3L_7542188_SNP [dm6]	A	C	1.078e^-4	0.633	SYNONYMOUS_CODING CG32376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12532509	2L_12532509_SNP [dm3] 2L_12532509_SNP [dm6]	G	A	1.078e^-4	0.633	INTRON bun
2L	18955361	2L_18955361_SNP [dm3] 2L_18955361_SNP [dm6]	G	T	1.082e^-4	0.633	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22696227	3R_22696227_SNP [dm3] 3R_26870505_SNP [dm6]	A	G	1.085e^-4	0.633	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	18955327	2L_18955327_SNP [dm3] 2L_18955327_SNP [dm6]	T	A	1.087e^-4	0.633	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3R	5405485	3R_5405485_SNP [dm3] 3R_9579763_SNP [dm6]	C	A	1.087e^-4	0.633	SYNONYMOUS_CODING CG8273	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13680372	2L_13680372_SNP [dm3] 2L_13680372_SNP [dm6]	C	G	1.088e^-4	0.633	INTRON CG31814	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13675981	2L_13675981_SNP [dm3] 2L_13675981_SNP [dm6]	T	C	1.089e^-4	0.633	DOWNSTREAM CG31814 INTERGENIC
X	3816749	X_3816749_SNP [dm3] X_3922716_SNP [dm6]	A	G	1.095e^-4	0.633	INTRON CG42541
3R	21027084	3R_21027084_SNP [dm3] 3R_25201362_SNP [dm6]	C	G	1.095e^-4	0.633	INTRON Cad96Ca & 1 other
3L	5869282	3L_5869282_SNP [dm3] 3L_5876182_SNP [dm6]	A	C	1.098e^-4	0.633	DOWNSTREAM CG18586 INTERGENIC
3R	24303672	3R_24303672_SNP [dm3] 3R_28477950_SNP [dm6]	A	C	1.098e^-4	0.633	INTERGENIC
2R	6108296	2R_6108296_SNP [dm3] 2R_10220791_SNP [dm6]	C	T	1.098e^-4	0.633	INTRON Hr46 & 1 other	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15274569	2R_15274569_SNP [dm3] 2R_19387064_SNP [dm6]	A	C	1.106e^-4	0.633	SYNONYMOUS_CODING CG10081
2R	9897964	2R_9897964_SNP [dm3] 2R_14010459_SNP [dm6]	A	T	1.107e^-4	0.633	START_GAINED mam UTR_5_PRIME mam	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	736277	2L_736277_SNP [dm3] 2L_736277_SNP [dm6]	A	G	1.116e^-4	0.633	DOWNSTREAM Eaat2 INTERGENIC
2R	16955921	2R_16955921_SNP [dm3] 2R_21068416_SNP [dm6]	G	A	1.116e^-4	0.633	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad
2L	14945236	2L_14945236_INS [dm3] 2L_14945236_INS [dm6]	T	TT	1.118e^-4	0.633	INTRON CG42313
X	16792956	X_16792956_SNP [dm3] X_16898923_SNP [dm6]	A	G	1.118e^-4	0.633	INTERGENIC
2L	11868523	2L_11868523_SNP [dm3] 2L_11868523_SNP [dm6]	T	G	1.122e^-4	0.633	INTRON Pde1c
X	17300685	X_17300685_SNP [dm3] X_17406652_SNP [dm6]	A	T	1.123e^-4	0.633	INTERGENIC
2L	7084504	2L_7084504_SNP [dm3] 2L_7084504_SNP [dm6]	C	T	1.128e^-4	0.633	UTR_5_PRIME Pvf2	TF binding site mE1_TFBS_Trl
2R	17908574	2R_17908574_DEL [dm3] 2R_22021069_DEL [dm6]	CC	C	1.137e^-4	0.636	INTRON CG34370
2R	6994880	2R_6994880_SNP [dm3] 2R_11107375_SNP [dm6]	A	T	1.141e^-4	0.637	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20438034	2R_20438034_SNP [dm3] 2R_24550511_SNP [dm6]	C	T	1.148e^-4	0.637	INTRON CG4622 & 1 other
2R	16742699	2R_16742699_SNP [dm3] 2R_20855194_SNP [dm6]	T	A	1.153e^-4	0.637	INTERGENIC
2R	16667893	2R_16667893_SNP [dm3] 2R_20780388_SNP [dm6]	A	G	1.158e^-4	0.637	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18436296	2L_18436296_SNP [dm3] 2L_18436296_SNP [dm6]	G	A	1.160e^-4	0.637	INTERGENIC
2L	15000237	2L_15000237_SNP [dm3] 2L_15000237_SNP [dm6]	T	A	1.162e^-4	0.637	INTERGENIC
3L	17132439	3L_17132439_INS [dm3] 3L_17139339_INS [dm6]	C	CACACAC	1.172e^-4	0.637	INTRON Rbp6
3L	5844845	3L_5844845_SNP [dm3] 3L_5851745_SNP [dm6]	T	A	1.177e^-4	0.637	INTERGENIC
2R	9967141	2R_9967141_SNP [dm3] 2R_14079636_SNP [dm6]	T	A	1.178e^-4	0.637	INTRON Prosap
2R	18985023	2R_18985023_SNP [dm3] 2R_23097500_SNP [dm6]	C	A	1.184e^-4	0.637	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	5844898	3L_5844898_SNP [dm3] 3L_5851798_SNP [dm6]	A	G	1.190e^-4	0.637	INTERGENIC
3L	5844903	3L_5844903_SNP [dm3] 3L_5851803_SNP [dm6]	T	C	1.190e^-4	0.637	INTERGENIC
3R	16857206	3R_16857206_SNP [dm3] 3R_21031484_SNP [dm6]	T	C	1.197e^-4	0.637	SYNONYMOUS_CODING Dhc93AB
3R	17181395	3R_17181395_SNP [dm3] 3R_21355673_SNP [dm6]	G	T	1.202e^-4	0.637	DOWNSTREAM pre-mod_mdg4_-K & 6 others INTRON mod_mdg4_
X	9226084	X_9226084_SNP [dm3] X_9332051_SNP [dm6]	A	G	1.204e^-4	0.637	INTRON CG34449
2L	18955334	2L_18955334_SNP [dm3] 2L_18955334_SNP [dm6]	C	T	1.204e^-4	0.637	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
X	11777407	X_11777407_SNP [dm3] X_11883374_SNP [dm6]	A	C	1.205e^-4	0.637	SYNONYMOUS_CODING CG10353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11797411	2R_11797411_SNP [dm3] 2R_15909906_SNP [dm6]	T	G	1.210e^-4	0.637	INTRON sli	TF binding site mE1_TFBS_inv
X	16898734	X_16898734_SNP [dm3] X_17004701_SNP [dm6]	A	T	1.211e^-4	0.637	INTRON CG45002
2R	18339405	2R_18339405_SNP [dm3] 2R_22451900_SNP [dm6]	G	C	1.220e^-4	0.637	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18955340	2L_18955340_SNP [dm3] 2L_18955340_SNP [dm6]	A	G	1.223e^-4	0.637	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3R	23857833	3R_23857833_SNP [dm3] 3R_28032111_SNP [dm6]	A	G	1.226e^-4	0.637	INTRON CG34362
2L	9612741	2L_9612741_SNP [dm3] 2L_9612741_SNP [dm6]	T	G	1.226e^-4	0.637	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2694132	3L_2694132_SNP [dm3] 3L_2694132_SNP [dm6]	T	C	1.226e^-4	0.637	INTRON Fife
2R	17087207	2R_17087207_SNP [dm3] 2R_21199702_SNP [dm6]	C	G	1.229e^-4	0.637	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	1047474	2L_1047474_SNP [dm3] 2L_1047474_SNP [dm6]	A	G	1.235e^-4	0.637	INTRON IA-2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18613342	2R_18613342_SNP [dm3] 2R_22725837_SNP [dm6]	G	A	1.238e^-4	0.637	INTRON jbug
2R	6372638	2R_6372638_SNP [dm3] 2R_10485133_SNP [dm6]	T	G	1.242e^-4	0.637	UTR_5_PRIME pre-lola-G INTRON lola & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12722081	3L_12722081_SNP [dm3] 3L_12728981_SNP [dm6]	T	C	1.245e^-4	0.637	INTERGENIC
2L	18955292	2L_18955292_SNP [dm3] 2L_18955292_SNP [dm6]	G	C	1.246e^-4	0.637	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	18955329	2L_18955329_MNP [dm3] 2L_18955329_MNP [dm6]	CCC	AAA	1.247e^-4	0.637	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3L	17132448	3L_17132448_SNP [dm3] 3L_17139348_SNP [dm6]	G	A	1.256e^-4	0.637	INTRON Rbp6
3R	4631393	3R_4631393_SNP [dm3] 3R_8805671_SNP [dm6]	A	C	1.259e^-4	0.637	START_GAINED CG9839 UTR_5_PRIME CG9839 UPSTREAM hng2 & 1 other INTRON Tcp-1eta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15043420	3L_15043420_SNP [dm3] 3L_15050320_SNP [dm6]	T	C	1.272e^-4	0.637	UTR_3_PRIME CG12310 UPSTREAM CG43678 & 1 other DOWNSTREAM CG43679 INTRON Sytbeta
3R	9896739	3R_9896739_SNP [dm3] 3R_14071017_SNP [dm6]	T	C	1.272e^-4	0.637	INTRON foxo
3L	15043404	3L_15043404_SNP [dm3] 3L_15050304_SNP [dm6]	A	G	1.274e^-4	0.637	UTR_3_PRIME CG12310 UPSTREAM CG43678 & 1 other DOWNSTREAM CG43679 INTRON Sytbeta
2L	14324495	2L_14324495_SNP [dm3] 2L_14324495_SNP [dm6]	G	C	1.276e^-4	0.637	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
X	3486464	X_3486464_SNP [dm3] X_3592431_SNP [dm6]	A	G	1.279e^-4	0.637	INTRON AstA-R1
3R	24991977	3R_24991977_SNP [dm3] 3R_29166255_SNP [dm6]	C	A	1.287e^-4	0.637	SYNONYMOUS_CODING CG11898	TF binding site mE1_TFBS_chinmo
3L	8323040	3L_8323040_SNP [dm3] 3L_8329940_SNP [dm6]	T	A	1.287e^-4	0.637	NON_SYNONYMOUS_CODING CG34462
2R	4449601	2R_4449601_SNP [dm3] 2R_8562096_SNP [dm6]	G	A	1.288e^-4	0.637	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15211494	3R_15211494_SNP [dm3] 3R_19385772_SNP [dm6]	T	A	1.289e^-4	0.637	UPSTREAM CR34285 INTRON Ino80	TF binding site BDTNP1_TFBS_twi
3R	6255457	3R_6255457_SNP [dm3] 3R_10429735_SNP [dm6]	T	A	1.292e^-4	0.637	INTERGENIC
3R	23666000	3R_23666000_SNP [dm3] 3R_27840278_SNP [dm6]	T	G	1.293e^-4	0.637	INTRON CG34353
2R	6992019	2R_6992019_SNP [dm3] 2R_11104514_SNP [dm6]	A	G	1.298e^-4	0.637	INTRON luna
X	19372117	X_19372117_SNP [dm3] X_19478084_SNP [dm6]	T	C	1.301e^-4	0.637	INTRON CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6728224	X_6728224_SNP [dm3] X_6834191_SNP [dm6]	A	G	1.305e^-4	0.637	SPLICE_SITE_REGION nonC INTRON nonC	TF binding site mE1_TFBS_cad
2L	957874	2L_957874_SNP [dm3] 2L_957874_SNP [dm6]	C	T	1.307e^-4	0.637	UTR_3_PRIME CG4341
3L	9559366	3L_9559366_SNP [dm3] 3L_9566266_SNP [dm6]	C	A	1.308e^-4	0.637	INTRON CG42673
X	6257152	X_6257152_SNP [dm3] X_6363119_SNP [dm6]	T	G	1.308e^-4	0.637	UPSTREAM swaPsi DOWNSTREAM swa EXON swaPsi	TF binding site mE1_TFBS_inv
3R	17039327	3R_17039327_SNP [dm3] 3R_21213605_SNP [dm6]	C	G	1.317e^-4	0.638	UTR_3_PRIME SNF4Agamma DOWNSTREAM SNF4Agamma
X	15499654	X_15499654_SNP [dm3] X_15605621_SNP [dm6]	C	T	1.318e^-4	0.638	SYNONYMOUS_CODING sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18955335	2L_18955335_DEL [dm3] 2L_18955335_DEL [dm6]	TCTA	T	1.326e^-4	0.638	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2L	18955343	2L_18955343_SNP [dm3] 2L_18955343_SNP [dm6]	G	A	1.326e^-4	0.638	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
3R	16951907	3R_16951907_SNP [dm3] 3R_21126185_SNP [dm6]	T	C	1.330e^-4	0.638	INTRON slmb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6728225	X_6728225_DEL [dm3] X_6834192_DEL [dm6]	TAC	T	1.337e^-4	0.638	INTRON nonC	TF binding site mE1_TFBS_cad
2L	9592110	2L_9592110_SNP [dm3] 2L_9592110_SNP [dm6]	T	C	1.340e^-4	0.638	DOWNSTREAM CG3841 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	1274045	3L_1274045_SNP [dm3] 3L_1274045_SNP [dm6]	C	T	1.342e^-4	0.638	SYNONYMOUS_CODING CG9134	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14392051	X_14392051_SNP [dm3] X_14498018_SNP [dm6]	C	T	1.344e^-4	0.638	DOWNSTREAM CG12540 INTERGENIC
3L	12763558	3L_12763558_SNP [dm3] 3L_12770458_SNP [dm6]	T	A	1.346e^-4	0.638	NON_SYNONYMOUS_CODING Hip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6659281	2R_6659281_SNP [dm3] 2R_10771776_SNP [dm6]	A	G	1.349e^-4	0.638	INTRON CG33144	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6783081	2R_6783081_SNP [dm3] 2R_10895576_SNP [dm6]	C	A	1.356e^-4	0.638	NON_SYNONYMOUS_CODING CG12942
X	6257155	X_6257155_SNP [dm3] X_6363122_SNP [dm6]	C	T	1.363e^-4	0.638	UPSTREAM swaPsi DOWNSTREAM swa EXON swaPsi	TF binding site mE1_TFBS_inv
2R	7039004	2R_7039004_SNP [dm3] 2R_11151499_SNP [dm6]	C	T	1.365e^-4	0.638	INTRON CG13229
3L	16828007	3L_16828007_SNP [dm3] 3L_16834907_SNP [dm6]	G	A	1.368e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16857218	3R_16857218_SNP [dm3] 3R_21031496_SNP [dm6]	T	C	1.368e^-4	0.638	SYNONYMOUS_CODING Dhc93AB
2R	17564861	2R_17564861_SNP [dm3] 2R_21677356_SNP [dm6]	C	T	1.370e^-4	0.638	INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5535112	X_5535112_SNP [dm3] X_5641079_SNP [dm6]	T	G	1.370e^-4	0.638	INTRON CG42492
3R	19132678	3R_19132678_SNP [dm3] 3R_23306956_SNP [dm6]	A	C	1.376e^-4	0.638	INTRON pnt
3R	9899334	3R_9899334_SNP [dm3] 3R_14073612_SNP [dm6]	T	A	1.377e^-4	0.638	INTRON foxo
2R	6995301	2R_6995301_SNP [dm3] 2R_11107796_SNP [dm6]	C	A	1.381e^-4	0.638	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5850241	3L_5850241_SNP [dm3] 3L_5857141_SNP [dm6]	A	G	1.387e^-4	0.638	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	17087208	2R_17087208_SNP [dm3] 2R_21199703_SNP [dm6]	C	G	1.392e^-4	0.638	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	11979897	2R_11979897_SNP [dm3] 2R_16092392_SNP [dm6]	C	T	1.392e^-4	0.638	INTRON Dg	TF binding site mE1_TFBS_HSA
2L	22320573	2L_22320573_SNP [dm3] 2L_22320573_SNP [dm6]	T	C	1.401e^-4	0.638	INTRON CG17018
3L	12647001	3L_12647001_SNP [dm3] 3L_12653901_SNP [dm6]	C	G	1.402e^-4	0.638	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13676145	2L_13676145_SNP [dm3] 2L_13676145_SNP [dm6]	G	A	1.404e^-4	0.638	DOWNSTREAM CG31814 INTERGENIC
2L	18955378	2L_18955378_SNP [dm3] 2L_18955378_SNP [dm6]	A	T	1.405e^-4	0.638	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1505195	2L_1505195_SNP [dm3] 2L_1505195_SNP [dm6]	A	T	1.411e^-4	0.638	DOWNSTREAM CR44064 INTERGENIC
2L	1503342	2L_1503342_SNP [dm3] 2L_1503342_SNP [dm6]	A	G	1.412e^-4	0.638	UPSTREAM CG7420 INTRON CR44064	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16895100	2L_16895100_SNP [dm3] 2L_16895100_SNP [dm6]	C	G	1.415e^-4	0.638	SYNONYMOUS_CODING tweek
3L	12763421	3L_12763421_SNP [dm3] 3L_12770321_SNP [dm6]	C	G	1.436e^-4	0.643	SYNONYMOUS_CODING Hip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7005107	2R_7005107_SNP [dm3] 2R_11117602_SNP [dm6]	C	T	1.436e^-4	0.643	UTR_3_PRIME Cyp12d1-p
X	3352110	X_3352110_SNP [dm3] X_3458077_SNP [dm6]	C	G	1.437e^-4	0.643	DOWNSTREAM CG16782 INTRON CR44999
3L	12859043	3L_12859043_SNP [dm3] 3L_12865943_SNP [dm6]	A	G	1.455e^-4	0.648	INTERGENIC
2R	7051200	2R_7051200_SNP [dm3] 2R_11163695_SNP [dm6]	C	A	1.455e^-4	0.648	INTRON shn & 1 other
3L	5839356	3L_5839356_SNP [dm3] 3L_5846256_SNP [dm6]	A	G	1.466e^-4	0.649	UPSTREAM vn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	21292599	X_21292599_SNP [dm3] X_21421572_SNP [dm6]	C	T	1.466e^-4	0.649	DOWNSTREAM CG42343 INTERGENIC	transposable element FlyBase
3L	1448386	3L_1448386_SNP [dm3] 3L_1448386_SNP [dm6]	T	A	1.469e^-4	0.649	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9768669	2L_9768669_SNP [dm3] 2L_9768669_SNP [dm6]	T	A	1.471e^-4	0.649	UTR_3_PRIME CG4017 UPSTREAM CG17633 INTRON ppk18
3R	21063621	3R_21063621_SNP [dm3] 3R_25237899_SNP [dm6]	C	T	1.476e^-4	0.65	SYNONYMOUS_CODING CG11852
3R	20774868	3R_20774868_SNP [dm3] 3R_24949146_SNP [dm6]	C	G	1.480e^-4	0.65	SYNONYMOUS_CODING CG13646
3L	15038602	3L_15038602_SNP [dm3] 3L_15045502_SNP [dm6]	C	T	1.491e^-4	0.653	INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	21756204	3R_21756204_SNP [dm3] 3R_25930482_SNP [dm6]	T	G	1.497e^-4	0.654	UPSTREAM CR34024 INTRON CCAP-R	TF binding site mE1_TFBS_inv
3L	5860163	3L_5860163_SNP [dm3] 3L_5867063_SNP [dm6]	A	T	1.507e^-4	0.657	INTERGENIC
2L	10092583	2L_10092583_SNP [dm3] 2L_10092583_SNP [dm6]	T	C	1.509e^-4	0.657	UPSTREAM CG13133 INTRON CG44153
2L	9863449	2L_9863449_SNP [dm3] 2L_9863449_SNP [dm6]	C	T	1.513e^-4	0.657	INTRON nAChRalpha6	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11734394	2L_11734394_SNP [dm3] 2L_11734394_SNP [dm6]	T	A	1.519e^-4	0.657	INTERGENIC
3L	5844847	3L_5844847_SNP [dm3] 3L_5851747_SNP [dm6]	G	T	1.520e^-4	0.657	INTERGENIC
2R	11862702	2R_11862702_SNP [dm3] 2R_15975197_SNP [dm6]	A	T	1.525e^-4	0.657	SYNONYMOUS_CODING Strn-Mlck
3R	21626136	3R_21626136_SNP [dm3] 3R_25800414_SNP [dm6]	G	A	1.529e^-4	0.657	INTERGENIC
3R	9310326	3R_9310326_SNP [dm3] 3R_13484604_SNP [dm6]	C	G	1.531e^-4	0.657	INTERGENIC
2R	11851881	2R_11851881_SNP [dm3] 2R_15964376_SNP [dm6]	G	A	1.539e^-4	0.657	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11853168	2R_11853168_SNP [dm3] 2R_15965663_SNP [dm6]	C	A	1.539e^-4	0.657	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14392028	X_14392028_SNP [dm3] X_14497995_SNP [dm6]	C	T	1.541e^-4	0.657	DOWNSTREAM CG12540 INTERGENIC
3L	14156024	3L_14156024_SNP [dm3] 3L_14162924_SNP [dm6]	G	A	1.547e^-4	0.658	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21515777	3R_21515777_SNP [dm3] 3R_25690055_SNP [dm6]	T	A	1.560e^-4	0.659	INTERGENIC
3L	18305819	3L_18305819_SNP [dm3] 3L_18312719_SNP [dm6]	T	C	1.562e^-4	0.659	INTERGENIC
3L	2694765	3L_2694765_SNP [dm3] 3L_2694765_SNP [dm6]	T	C	1.571e^-4	0.659	INTRON Fife
3L	5843015	3L_5843015_SNP [dm3] 3L_5849915_SNP [dm6]	G	A	1.571e^-4	0.659	INTERGENIC
3L	5844964	3L_5844964_SNP [dm3] 3L_5851864_SNP [dm6]	C	T	1.572e^-4	0.659	INTERGENIC
3R	24126993	3R_24126993_SNP [dm3] 3R_28301271_SNP [dm6]	C	T	1.572e^-4	0.659	INTERGENIC
3R	10187783	3R_10187783_SNP [dm3] 3R_14362061_SNP [dm6]	C	T	1.580e^-4	0.659	UPSTREAM CG31320 INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23881615	3R_23881615_SNP [dm3] 3R_28055893_SNP [dm6]	G	A	1.583e^-4	0.659	INTRON CG34362
3L	1268644	3L_1268644_SNP [dm3] 3L_1268644_SNP [dm6]	T	A	1.591e^-4	0.659	INTRON CG9134
2L	15008722	2L_15008722_SNP [dm3] 2L_15008722_SNP [dm6]	T	C	1.594e^-4	0.659	NON_SYNONYMOUS_CODING l_2_35Bc DOWNSTREAM NC2beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22566847	2L_22566847_SNP [dm3] 2L_22674115_SNP [dm6]	C	T	1.594e^-4	0.659	INTRON CG40006
2R	10175892	2R_10175892_SNP [dm3] 2R_14288387_SNP [dm6]	A	C	1.600e^-4	0.659	UPSTREAM Ih INTRON Ih
2R	17907306	2R_17907306_SNP [dm3] 2R_22019801_SNP [dm6]	A	C	1.601e^-4	0.659	INTRON CG34370
3L	12767447	3L_12767447_SNP [dm3] 3L_12774347_SNP [dm6]	C	G	1.608e^-4	0.659	NON_SYNONYMOUS_CODING CG32106 UPSTREAM Hip1	TF binding site mE1_TFBS_sens
2R	10722446	2R_10722446_SNP [dm3] 2R_14834941_SNP [dm6]	C	T	1.610e^-4	0.659	DOWNSTREAM CG10205 INTERGENIC
3R	25866743	3R_25866743_SNP [dm3] 3R_30041021_SNP [dm6]	A	C	1.616e^-4	0.659	UTR_3_PRIME Sry-beta UPSTREAM Sry-alpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	557374	X_557374_SNP [dm3] X_663341_SNP [dm6]	G	C	1.616e^-4	0.659	INTERGENIC	TF binding site mE1_TFBS_sens
3L	17132449	3L_17132449_SNP [dm3] 3L_17139349_SNP [dm6]	A	G	1.623e^-4	0.659	INTRON Rbp6
2R	6496454	2R_6496454_SNP [dm3] 2R_10608949_SNP [dm6]	C	T	1.624e^-4	0.659	INTRON psq
2L	1518197	2L_1518197_SNP [dm3] 2L_1518197_SNP [dm6]	G	T	1.631e^-4	0.659	UPSTREAM CG18132 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11081718	3R_11081718_INS [dm3] 3R_15255996_INS [dm6]	G	GG	1.632e^-4	0.659	UTR_3_PRIME CG42404
3L	5844916	3L_5844916_SNP [dm3] 3L_5851816_SNP [dm6]	G	C	1.633e^-4	0.659	INTERGENIC
3L	5844966	3L_5844966_SNP [dm3] 3L_5851866_SNP [dm6]	A	T	1.635e^-4	0.659	INTERGENIC
2R	18328661	2R_18328661_SNP [dm3] 2R_22441156_SNP [dm6]	T	C	1.636e^-4	0.659	INTERGENIC
2L	773326	2L_773326_SNP [dm3] 2L_773326_SNP [dm6]	A	C	1.637e^-4	0.659	UPSTREAM CG12506 DOWNSTREAM CR44614 INTERGENIC
3L	5860174	3L_5860174_SNP [dm3] 3L_5867074_SNP [dm6]	C	A	1.643e^-4	0.66	INTERGENIC
3R	22761666	3R_22761666_SNP [dm3] 3R_26935944_SNP [dm6]	A	T	1.650e^-4	0.66	INTRON sda
X	8400139	X_8400139_SNP [dm3] X_8506106_SNP [dm6]	C	T	1.653e^-4	0.66	INTRON CG33181
2L	8531292	2L_8531292_SNP [dm3] 2L_8531292_SNP [dm6]	C	T	1.662e^-4	0.66	INTRON CG17834
3L	1277350	3L_1277350_SNP [dm3] 3L_1277350_SNP [dm6]	C	T	1.662e^-4	0.66	INTRON CG32333
2L	3267838	2L_3267838_SNP [dm3] 2L_3267838_SNP [dm6]	A	G	1.665e^-4	0.66	UPSTREAM CR44484 INTERGENIC
3L	15114583	3L_15114583_SNP [dm3] 3L_15121483_SNP [dm6]	C	G	1.666e^-4	0.66	UPSTREAM CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19384272	2R_19384272_SNP [dm3] 2R_23496749_SNP [dm6]	A	G	1.678e^-4	0.661	INTERGENIC
X	21359021	X_21359021_SNP [dm3] X_21487994_SNP [dm6]	G	A	1.679e^-4	0.661	INTERGENIC
2R	6982326	2R_6982326_SNP [dm3] 2R_11094821_SNP [dm6]	A	G	1.684e^-4	0.661	INTRON luna
X	22293758	X_22293758_SNP [dm3] X_22891922_SNP [dm6]	G	A	1.690e^-4	0.661	INTERGENIC
2R	7000405	2R_7000405_SNP [dm3] 2R_11112900_SNP [dm6]	G	A	1.691e^-4	0.661	INTRON luna
2R	14386427	2R_14386427_SNP [dm3] 2R_18498922_SNP [dm6]	G	A	1.692e^-4	0.661	UPSTREAM CG30116 INTERGENIC
3L	16387358	3L_16387358_SNP [dm3] 3L_16394258_SNP [dm6]	G	A	1.693e^-4	0.661	UPSTREAM Grp INTRON CG44836	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1514428	2L_1514428_SNP [dm3] 2L_1514428_SNP [dm6]	T	A	1.701e^-4	0.662	INTERGENIC
2L	15873897	2L_15873897_SNP [dm3] 2L_15873897_SNP [dm6]	A	T	1.706e^-4	0.662	INTERGENIC
3R	9772721	3R_9772721_SNP [dm3] 3R_13946999_SNP [dm6]	T	A	1.708e^-4	0.662	INTERGENIC
3L	5850236	3L_5850236_MNP [dm3] 3L_5857136_MNP [dm6]	TCG	GAC	1.715e^-4	0.662	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	14045411	X_14045411_SNP [dm3] X_14151378_SNP [dm6]	G	A	1.717e^-4	0.662	DOWNSTREAM CG12479 INTERGENIC
X	17507533	X_17507533_DEL [dm3] X_17613500_DEL [dm6]	AAA	A	1.720e^-4	0.662	INTERGENIC
3R	6850636	3R_6850636_SNP [dm3] 3R_11024914_SNP [dm6]	G	T	1.724e^-4	0.662	INTRON CG34114
3R	8062834	3R_8062834_SNP [dm3] 3R_12237112_SNP [dm6]	A	T	1.729e^-4	0.662	UPSTREAM Cyp313a2 DOWNSTREAM Cyp313a3 INTERGENIC
2L	2582153	2L_2582153_SNP [dm3] 2L_2582153_SNP [dm6]	C	T	1.730e^-4	0.662	DOWNSTREAM Arpc5 INTRON Drp1	TF binding site mE1_TFBS_sens
3L	5850277	3L_5850277_SNP [dm3] 3L_5857177_SNP [dm6]	C	T	1.730e^-4	0.662	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	15440598	3L_15440598_SNP [dm3] 3L_15447498_SNP [dm6]	G	A	1.741e^-4	0.662	INTERGENIC
3L	9935845	3L_9935845_SNP [dm3] 3L_9942745_SNP [dm6]	G	C	1.741e^-4	0.662	INTRON CG34356
2L	6077772	2L_6077772_SNP [dm3] 2L_6077772_SNP [dm6]	T	C	1.745e^-4	0.662	UPSTREAM CR9162 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	17693156	3L_17693156_SNP [dm3] 3L_17700056_SNP [dm6]	T	A	1.746e^-4	0.662	INTRON Ccn
3L	16810412	3L_16810412_SNP [dm3] 3L_16817312_SNP [dm6]	C	T	1.748e^-4	0.662	INTRON nudC & 1 other
3R	26935396	3R_26935396_SNP [dm3] 3R_31109674_SNP [dm6]	C	A	1.762e^-4	0.664	UPSTREAM CG11318 INTERGENIC
3R	7148040	3R_7148040_SNP [dm3] 3R_11322318_SNP [dm6]	C	T	1.767e^-4	0.664	INTERGENIC
3R	17167400	3R_17167400_SNP [dm3] 3R_21341678_SNP [dm6]	G	T	1.770e^-4	0.664	INTRON CG16791	TF binding site BDTNP1_TFBS_da
2R	7479864	2R_7479864_SNP [dm3] 2R_11592359_SNP [dm6]	C	T	1.781e^-4	0.664	UPSTREAM snoRNA:Psi28S-1180 INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	9783685	3R_9783685_SNP [dm3] 3R_13957963_SNP [dm6]	T	A	1.790e^-4	0.664	UPSTREAM Ipp INTERGENIC	TF binding site mE1_TFBS_cad
2R	20438301	2R_20438301_SNP [dm3] 2R_24550778_SNP [dm6]	A	G	1.793e^-4	0.664	INTRON CG4622 & 1 other
3R	22136790	3R_22136790_SNP [dm3] 3R_26311068_SNP [dm6]	A	G	1.794e^-4	0.664	INTERGENIC
X	5940404	X_5940404_SNP [dm3] X_6046371_SNP [dm6]	C	T	1.795e^-4	0.664	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12859032	3L_12859032_SNP [dm3] 3L_12865932_SNP [dm6]	T	A	1.797e^-4	0.664	INTERGENIC
3L	7535318	3L_7535318_SNP [dm3] 3L_7542218_SNP [dm6]	C	T	1.800e^-4	0.664	SYNONYMOUS_CODING CG32376	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4411536	2R_4411536_SNP [dm3] 2R_8524031_SNP [dm6]	C	T	1.808e^-4	0.664	INTRON mtt
2L	15867869	2L_15867869_SNP [dm3] 2L_15867869_SNP [dm6]	G	T	1.811e^-4	0.664	INTERGENIC
3L	19187762	3L_19187762_SNP [dm3] 3L_19194662_SNP [dm6]	C	T	1.813e^-4	0.664	INTRON fz2
X	19372096	X_19372096_SNP [dm3] X_19478063_SNP [dm6]	T	G	1.813e^-4	0.664	INTRON CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15042018	2L_15042018_SNP [dm3] 2L_15042018_SNP [dm6]	T	G	1.815e^-4	0.664	INTRON Su_H_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12468584	3L_12468584_SNP [dm3] 3L_12475484_SNP [dm6]	A	G	1.822e^-4	0.664	SYNONYMOUS_CODING CG10663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11570162	3L_11570162_SNP [dm3] 3L_11577062_SNP [dm6]	T	G	1.822e^-4	0.664	UTR_3_PRIME CG33271 UPSTREAM CG33489
X	18047960	X_18047960_SNP [dm3] X_18153927_SNP [dm6]	C	T	1.828e^-4	0.664	INTERGENIC
2L	1504489	2L_1504489_SNP [dm3] 2L_1504489_SNP [dm6]	G	A	1.833e^-4	0.664	DOWNSTREAM CR44064 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11869500	2R_11869500_SNP [dm3] 2R_15981995_SNP [dm6]	C	T	1.835e^-4	0.664	SYNONYMOUS_CODING Strn-Mlck
2L	9612734	2L_9612734_SNP [dm3] 2L_9612734_SNP [dm6]	G	C	1.846e^-4	0.664	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7007519	2R_7007519_DEL [dm3] 2R_11120014_DEL [dm6]	TT	T	1.854e^-4	0.664	UTR_3_PRIME Cyp12d1-p
3R	16965539	3R_16965539_SNP [dm3] 3R_21139817_SNP [dm6]	T	G	1.860e^-4	0.664	SYNONYMOUS_CODING meigo UPSTREAM SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17416565	2R_17416565_SNP [dm3] 2R_21529060_SNP [dm6]	C	A	1.861e^-4	0.664	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11117555	3L_11117555_SNP [dm3] 3L_11124455_SNP [dm6]	T	A	1.866e^-4	0.664	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	5935710	X_5935710_SNP [dm3] X_6041677_SNP [dm6]	A	G	1.873e^-4	0.664	SYNONYMOUS_CODING CG5937	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14324426	2L_14324426_SNP [dm3] 2L_14324426_SNP [dm6]	A	G	1.873e^-4	0.664	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3L	19014447	3L_19014447_SNP [dm3] 3L_19021347_SNP [dm6]	G	T	1.878e^-4	0.664	INTRON nkd
3R	25804600	3R_25804600_SNP [dm3] 3R_29978878_SNP [dm6]	A	C	1.878e^-4	0.664	INTERGENIC
3L	3786738	3L_3786738_SNP [dm3] 3L_3786738_SNP [dm6]	A	T	1.883e^-4	0.664	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	18536158	3R_18536158_SNP [dm3] 3R_22710436_SNP [dm6]	A	T	1.887e^-4	0.664	SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	3263272	X_3263272_DEL [dm3] X_3369239_DEL [dm6]	TA	T	1.889e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	13241962	3L_13241962_SNP [dm3] 3L_13248862_SNP [dm6]	C	T	1.895e^-4	0.664	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
3L	5860140	3L_5860140_SNP [dm3] 3L_5867040_SNP [dm6]	G	A	1.903e^-4	0.664	INTERGENIC
3L	1871204	3L_1871204_SNP [dm3] 3L_1871204_SNP [dm6]	G	A	1.905e^-4	0.664	SYNONYMOUS_CODING CG13924 DOWNSTREAM dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14441651	X_14441651_SNP [dm3] X_14547618_SNP [dm6]	T	A	1.911e^-4	0.664	INTERGENIC
2R	19594002	2R_19594002_SNP [dm3] 2R_23706479_SNP [dm6]	T	C	1.911e^-4	0.664	SYNONYMOUS_CODING l_2_not UPSTREAM l_2_tid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4875909	2R_4875909_SNP [dm3] 2R_8988404_SNP [dm6]	C	G	1.912e^-4	0.664	INTERGENIC
3R	8709684	3R_8709684_SNP [dm3] 3R_12883962_SNP [dm6]	G	A	1.914e^-4	0.664	INTERGENIC
2R	16956262	2R_16956262_SNP [dm3] 2R_21068757_SNP [dm6]	A	C	1.921e^-4	0.664	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7535975	3L_7535975_SNP [dm3] 3L_7542875_SNP [dm6]	C	G	1.921e^-4	0.664	UPSTREAM CG32376 INTERGENIC
3L	7535981	3L_7535981_SNP [dm3] 3L_7542881_SNP [dm6]	A	C	1.921e^-4	0.664	UPSTREAM CG32376 INTERGENIC
2L	11164934	2L_11164934_SNP [dm3] 2L_11164934_SNP [dm6]	G	A	1.924e^-4	0.664	INTRON Ca-beta
3L	18352929	3L_18352929_SNP [dm3] 3L_18359829_SNP [dm6]	A	G	1.929e^-4	0.664	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13271718	3L_13271718_SNP [dm3] 3L_13278618_SNP [dm6]	T	A	1.936e^-4	0.664	UTR_3_PRIME caps
3R	18262537	3R_18262537_SNP [dm3] 3R_22436815_SNP [dm6]	A	G	1.937e^-4	0.664	UPSTREAM CG13847 INTERGENIC
X	12401735	X_12401735_SNP [dm3] X_12507702_SNP [dm6]	A	G	1.939e^-4	0.664	INTRON CG2556	TF binding site BDTNP1_TFBS_da
3R	22791022	3R_22791022_SNP [dm3] 3R_26965300_SNP [dm6]	A	G	1.946e^-4	0.664	SYNONYMOUS_CODING Gr97a UPSTREAM Tsp97E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11201860	3L_11201860_SNP [dm3] 3L_11208760_SNP [dm6]	G	A	1.947e^-4	0.664	SYNONYMOUS_CODING Ube3a	TF binding site mE1_TFBS_cad
3L	749007	3L_749007_SNP [dm3] 3L_749007_SNP [dm6]	A	G	1.952e^-4	0.664	UPSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	905186	3L_905186_SNP [dm3] 3L_905186_SNP [dm6]	T	A	1.958e^-4	0.664	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1266870	3L_1266870_SNP [dm3] 3L_1266870_SNP [dm6]	C	A	1.958e^-4	0.664	INTRON CG9134
X	6307731	X_6307731_SNP [dm3] X_6413698_SNP [dm6]	C	A	1.959e^-4	0.664	INTERGENIC
2R	10717585	2R_10717585_SNP [dm3] 2R_14830080_SNP [dm6]	A	T	1.960e^-4	0.664	INTERGENIC
2R	16403358	2R_16403358_SNP [dm3] 2R_20515853_SNP [dm6]	A	G	1.967e^-4	0.664	INTERGENIC
3R	26935568	3R_26935568_SNP [dm3] 3R_31109846_SNP [dm6]	G	A	1.968e^-4	0.664	UPSTREAM CG11318 INTERGENIC
3R	9875491	3R_9875491_SNP [dm3] 3R_14049769_SNP [dm6]	A	T	1.970e^-4	0.664	INTERGENIC
3L	11116380	3L_11116380_SNP [dm3] 3L_11123280_SNP [dm6]	C	A	1.971e^-4	0.664	UPSTREAM CG42575 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18955346	2L_18955346_SNP [dm3] 2L_18955346_SNP [dm6]	C	T	1.971e^-4	0.664	UPSTREAM CG10621 DOWNSTREAM CG10623 & 1 other INTERGENIC
2R	6992003	2R_6992003_SNP [dm3] 2R_11104498_SNP [dm6]	G	A	1.976e^-4	0.664	INTRON luna
3R	11074856	3R_11074856_SNP [dm3] 3R_15249134_SNP [dm6]	T	C	1.979e^-4	0.664	NON_SYNONYMOUS_CODING CG6499 UPSTREAM CG42404	TF binding site mE1_TFBS_cad
3R	25804640	3R_25804640_INS [dm3] 3R_29978918_INS [dm6]	G	GTG	1.980e^-4	0.664	INTERGENIC
3L	12444740	3L_12444740_SNP [dm3] 3L_12451640_SNP [dm6]	G	A	1.982e^-4	0.664	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1938998	3L_1938998_SNP [dm3] 3L_1938998_SNP [dm6]	G	A	1.985e^-4	0.664	UTR_5_PRIME CG5687 UPSTREAM CG5687 DOWNSTREAM CR44536
2R	11853944	2R_11853944_SNP [dm3] 2R_15966439_SNP [dm6]	G	A	1.991e^-4	0.664	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2294190	3L_2294190_SNP [dm3] 3L_2294190_SNP [dm6]	G	C	1.992e^-4	0.664	INTRON MsR2
3L	13241779	3L_13241779_SNP [dm3] 3L_13248679_SNP [dm6]	T	G	1.995e^-4	0.664	UTR_5_PRIME CG32119 UPSTREAM tRNA:D2:69F INTRON caps
3L	11116384	3L_11116384_SNP [dm3] 3L_11123284_SNP [dm6]	T	C	1.996e^-4	0.664	UPSTREAM CG42575 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16895037	2L_16895037_SNP [dm3] 2L_16895037_SNP [dm6]	T	A	1.999e^-4	0.664	SYNONYMOUS_CODING tweek
2R	6733113	2R_6733113_SNP [dm3] 2R_10845608_SNP [dm6]	G	A	2.001e^-4	0.664	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5850292	3L_5850292_SNP [dm3] 3L_5857192_SNP [dm6]	A	T	2.003e^-4	0.664	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	25807620	3R_25807620_SNP [dm3] 3R_29981898_SNP [dm6]	T	A	2.009e^-4	0.664	INTERGENIC
2L	6861475	2L_6861475_SNP [dm3] 2L_6861475_SNP [dm6]	T	A	2.016e^-4	0.664	SYNONYMOUS_CODING Nha1 DOWNSTREAM l_2_k09022	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	19567695	3R_19567695_SNP [dm3] 3R_23741973_SNP [dm6]	C	T	2.018e^-4	0.664	INTRON Hmgcr
2L	14999843	2L_14999843_SNP [dm3] 2L_14999843_SNP [dm6]	A	G	2.019e^-4	0.664	INTERGENIC
2L	15041244	2L_15041244_SNP [dm3] 2L_15041244_SNP [dm6]	T	A	2.030e^-4	0.667	SYNONYMOUS_CODING Su_H_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3600057	2L_3600057_SNP [dm3] 2L_3600057_SNP [dm6]	G	A	2.038e^-4	0.668	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2107251	3L_2107251_SNP [dm3] 3L_2107251_SNP [dm6]	G	T	2.045e^-4	0.669	INTRON sls	TF binding site BDTNP1_TFBS_dl
2R	12557923	2R_12557923_SNP [dm3] 2R_16670418_SNP [dm6]	C	A	2.053e^-4	0.669	UTR_5_PRIME CG34457
3R	23482042	3R_23482042_SNP [dm3] 3R_27656320_SNP [dm6]	G	C	2.057e^-4	0.669	NON_SYNONYMOUS_CODING tau DOWNSTREAM Mlc1
2L	7129123	2L_7129123_SNP [dm3] 2L_7129123_SNP [dm6]	G	A	2.058e^-4	0.669	INTRON Pvf3
3R	4594442	3R_4594442_SNP [dm3] 3R_8768720_SNP [dm6]	G	A	2.059e^-4	0.669	UPSTREAM CG11768 & 2 others INTERGENIC
3L	14493704	3L_14493704_SNP [dm3] 3L_14500604_SNP [dm6]	C	A	2.080e^-4	0.669	INTRON bbg
3L	18332349	3L_18332349_DEL [dm3] 3L_18339249_DEL [dm6]	TTGC	T	2.085e^-4	0.669	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6864532	2L_6864532_SNP [dm3] 2L_6864532_SNP [dm6]	T	A	2.085e^-4	0.669	UTR_5_PRIME Nha1 INTRON Nha1
2L	14906145	2L_14906145_SNP [dm3] 2L_14906145_SNP [dm6]	T	C	2.087e^-4	0.669	INTERGENIC
2L	9756048	2L_9756048_SNP [dm3] 2L_9756048_SNP [dm6]	G	A	2.087e^-4	0.669	INTERGENIC
3R	23774301	3R_23774301_SNP [dm3] 3R_27948579_SNP [dm6]	T	A	2.087e^-4	0.669	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	776171	2L_776171_SNP [dm3] 2L_776171_SNP [dm6]	C	T	2.090e^-4	0.669	UPSTREAM CG13946 INTERGENIC
3R	25875947	3R_25875947_SNP [dm3] 3R_30050225_SNP [dm6]	G	A	2.092e^-4	0.669	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11848846	2R_11848846_SNP [dm3] 2R_15961341_SNP [dm6]	C	T	2.094e^-4	0.669	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5849474	3L_5849474_SNP [dm3] 3L_5856374_SNP [dm6]	C	T	2.095e^-4	0.669	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22280917	3R_22280917_SNP [dm3] 3R_26455195_SNP [dm6]	T	C	2.100e^-4	0.669	DOWNSTREAM Pdf & 2 others INTERGENIC
2R	54442	2R_54442_SNP [dm3] 2R_4166937_SNP [dm6]	G	T	2.102e^-4	0.669	INTERGENIC
2R	7004148	2R_7004148_SNP [dm3] 2R_11116643_SNP [dm6]	A	T	2.111e^-4	0.671	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16666690	2R_16666690_SNP [dm3] 2R_20779185_SNP [dm6]	T	C	2.114e^-4	0.671	SYNONYMOUS_CODING CG43711
2L	5133768	2L_5133768_SNP [dm3] 2L_5133768_SNP [dm6]	A	G	2.124e^-4	0.672	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10794826	2R_10794826_SNP [dm3] 2R_14907321_SNP [dm6]	T	G	2.128e^-4	0.672	UTR_5_PRIME CG10249 INTRON CG10249
3L	11266075	3L_11266075_SNP [dm3] 3L_11272975_SNP [dm6]	A	G	2.129e^-4	0.672	DOWNSTREAM CR44720 INTERGENIC
2R	13397188	2R_13397188_INS [dm3] 2R_17509683_INS [dm6]	T	TT	2.139e^-4	0.672	UTR_5_PRIME CG34193 UPSTREAM CG34193
X	11777386	X_11777386_SNP [dm3] X_11883353_SNP [dm6]	A	G	2.141e^-4	0.672	SYNONYMOUS_CODING CG10353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8733988	3L_8733988_SNP [dm3] 3L_8740888_SNP [dm6]	G	T	2.142e^-4	0.672	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12762278	3L_12762278_SNP [dm3] 3L_12769178_SNP [dm6]	A	T	2.144e^-4	0.672	SYNONYMOUS_CODING Hip1 DOWNSTREAM CG32113
2L	13970914	2L_13970914_SNP [dm3] 2L_13970914_SNP [dm6]	T	A	2.147e^-4	0.672	UPSTREAM NimB4 INTRON NimB5
2L	9874062	2L_9874062_SNP [dm3] 2L_9874062_SNP [dm6]	C	T	2.162e^-4	0.674	INTRON nAChRalpha6
3L	3786596	3L_3786596_SNP [dm3] 3L_3786596_SNP [dm6]	A	T	2.162e^-4	0.674	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	1448440	3L_1448440_SNP [dm3] 3L_1448440_SNP [dm6]	A	G	2.163e^-4	0.674	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5939904	3L_5939904_SNP [dm3] 3L_5946804_SNP [dm6]	G	A	2.166e^-4	0.674	INTRON CG33993	TF binding site mE1_TFBS_cad
2R	16746416	2R_16746416_SNP [dm3] 2R_20858911_SNP [dm6]	T	C	2.174e^-4	0.675	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7111836	2R_7111836_SNP [dm3] 2R_11224331_SNP [dm6]	T	A	2.189e^-4	0.676	INTRON CG7737
3L	3625946	3L_3625946_SNP [dm3] 3L_3625946_SNP [dm6]	T	A	2.191e^-4	0.676	UPSTREAM dar1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18052072	X_18052072_SNP [dm3] X_18158039_SNP [dm6]	T	A	2.193e^-4	0.676	INTRON Frq1
2L	14567640	2L_14567640_SNP [dm3] 2L_14567640_SNP [dm6]	G	A	2.194e^-4	0.676	INTERGENIC
2R	11049033	2R_11049033_SNP [dm3] 2R_15161528_SNP [dm6]	C	A	2.196e^-4	0.676	INTRON igl
2L	2264646	2L_2264646_SNP [dm3] 2L_2264646_SNP [dm6]	G	A	2.198e^-4	0.676	NON_SYNONYMOUS_CODING CG34049 DOWNSTREAM CG4270
3R	25834505	3R_25834505_SNP [dm3] 3R_30008783_SNP [dm6]	T	C	2.206e^-4	0.677	INTRON Nlp & 1 other	TF binding site mE1_TFBS_sens
X	10172513	X_10172513_SNP [dm3] X_10278480_SNP [dm6]	G	A	2.221e^-4	0.68	SYNONYMOUS_CODING alpha-Man-I	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11266057	3L_11266057_SNP [dm3] 3L_11272957_SNP [dm6]	T	A	2.232e^-4	0.68	INTERGENIC
3L	10322589	3L_10322589_INS [dm3] 3L_10329489_INS [dm6]	A	AG	2.233e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
3R	19954568	3R_19954568_SNP [dm3] 3R_24128846_SNP [dm6]	G	A	2.245e^-4	0.68	DOWNSTREAM Rootletin INTRON CG5463	TF binding site mE1_TFBS_cad
2R	15747949	2R_15747949_SNP [dm3] 2R_19860444_SNP [dm6]	G	A	2.246e^-4	0.68	UPSTREAM CR44570 INTRON CR44571
3R	22136703	3R_22136703_SNP [dm3] 3R_26310981_SNP [dm6]	C	T	2.247e^-4	0.68	INTERGENIC
2R	19159998	2R_19159998_SNP [dm3] 2R_23272475_SNP [dm6]	C	T	2.248e^-4	0.68	INTRON ord
3L	904908	3L_904908_SNP [dm3] 3L_904908_SNP [dm6]	T	A	2.255e^-4	0.68	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14151325	2R_14151325_SNP [dm3] 2R_18263820_SNP [dm6]	A	C	2.256e^-4	0.68	INTERGENIC
2R	17564883	2R_17564883_SNP [dm3] 2R_21677378_SNP [dm6]	C	T	2.262e^-4	0.68	INTRON CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16954194	2R_16954194_SNP [dm3] 2R_21066689_SNP [dm6]	A	G	2.266e^-4	0.68	SPLICE_SITE_REGION Cht4 INTRON Cht4	TF binding site mE1_TFBS_cad
3R	21547469	3R_21547469_SNP [dm3] 3R_25721747_SNP [dm6]	T	C	2.270e^-4	0.68	INTRON LpR2
3R	21027486	3R_21027486_SNP [dm3] 3R_25201764_SNP [dm6]	C	T	2.271e^-4	0.68	INTRON CG13654 & 1 other
3L	3563850	3L_3563850_SNP [dm3] 3L_3563850_SNP [dm6]	C	T	2.280e^-4	0.68	INTRON Eip63E
3L	15156125	3L_15156125_SNP [dm3] 3L_15163025_SNP [dm6]	A	G	2.284e^-4	0.68	SYNONYMOUS_CODING CG7011 DOWNSTREAM CG6878	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	16653456	3R_16653456_SNP [dm3] 3R_20827734_SNP [dm6]	A	C	2.284e^-4	0.68	DOWNSTREAM CR44047 INTRON AdSS & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22136599	3R_22136599_SNP [dm3] 3R_26310877_SNP [dm6]	C	T	2.288e^-4	0.68	INTERGENIC
2R	15274669	2R_15274669_SNP [dm3] 2R_19387164_SNP [dm6]	T	C	2.300e^-4	0.68	INTRON CG10081
2L	9757999	2L_9757999_SNP [dm3] 2L_9757999_SNP [dm6]	A	G	2.302e^-4	0.68	UPSTREAM zf30C INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	6415400	X_6415400_DEL [dm3] X_6521367_DEL [dm6]	ATA	A	2.317e^-4	0.68	INTRON CG42340
2L	6472395	2L_6472395_SNP [dm3] 2L_6472395_SNP [dm6]	C	T	2.317e^-4	0.68	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11075806	3R_11075806_SNP [dm3] 3R_15250084_SNP [dm6]	G	C	2.319e^-4	0.68	UPSTREAM CG42404 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9952011	2L_9952011_SNP [dm3] 2L_9952011_SNP [dm6]	T	C	2.325e^-4	0.68	DOWNSTREAM CG13126 INTERGENIC	TF binding site mE1_TFBS_inv
X	17300532	X_17300532_DEL [dm3] X_17406499_DEL [dm6]	AGTAG	A	2.328e^-4	0.68	INTERGENIC
X	14075641	X_14075641_SNP [dm3] X_14181608_SNP [dm6]	C	T	2.328e^-4	0.68	SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo
3L	4119298	3L_4119298_SNP [dm3] 3L_4119298_SNP [dm6]	C	A	2.332e^-4	0.68	INTRON Chd64
X	10061067	X_10061067_SNP [dm3] X_10167034_SNP [dm6]	C	A	2.340e^-4	0.68	INTRON CR44894 & 1 other
2L	15134810	2L_15134810_SNP [dm3] 2L_15134810_SNP [dm6]	T	C	2.342e^-4	0.68	INTERGENIC
2R	17091778	2R_17091778_SNP [dm3] 2R_21204273_SNP [dm6]	T	G	2.343e^-4	0.68	INTRON Glycogenin & 1 other
3L	5860177	3L_5860177_SNP [dm3] 3L_5867077_SNP [dm6]	T	A	2.345e^-4	0.68	INTERGENIC
3L	12763412	3L_12763412_SNP [dm3] 3L_12770312_SNP [dm6]	C	T	2.346e^-4	0.68	SYNONYMOUS_CODING Hip1	TF binding site mE1_TFBS_sens
2R	4301557	2R_4301557_SNP [dm3] 2R_8414052_SNP [dm6]	A	G	2.350e^-4	0.68	INTERGENIC
X	9901008	X_9901008_SNP [dm3] X_10006975_SNP [dm6]	G	A	2.354e^-4	0.68	DOWNSTREAM CG32694 INTERGENIC
3L	7535965	3L_7535965_SNP [dm3] 3L_7542865_SNP [dm6]	C	T	2.360e^-4	0.68	UPSTREAM CG32376 INTERGENIC
3R	8339960	3R_8339960_SNP [dm3] 3R_12514238_SNP [dm6]	C	T	2.361e^-4	0.68	INTRON Octbeta3R
3L	7535925	3L_7535925_SNP [dm3] 3L_7542825_SNP [dm6]	G	A	2.362e^-4	0.68	UPSTREAM CG32376 INTERGENIC
2L	5133822	2L_5133822_SNP [dm3] 2L_5133822_SNP [dm6]	T	C	2.365e^-4	0.68	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9926335	2R_9926335_SNP [dm3] 2R_14038830_SNP [dm6]	G	T	2.366e^-4	0.68	NON_SYNONYMOUS_CODING mam	TF binding site mE1_TFBS_chinmo
3L	8097165	3L_8097165_SNP [dm3] 3L_8104065_SNP [dm6]	A	G	2.368e^-4	0.68	SYNONYMOUS_CODING Ect4	TF binding site mE1_TFBS_cad
2L	14997784	2L_14997784_SNP [dm3] 2L_14997784_SNP [dm6]	A	T	2.368e^-4	0.68	UPSTREAM mol INTERGENIC
2R	7058679	2R_7058679_SNP [dm3] 2R_11171174_SNP [dm6]	G	A	2.387e^-4	0.68	INTRON shn & 1 other
2R	9892970	2R_9892970_SNP [dm3] 2R_14005465_SNP [dm6]	A	G	2.388e^-4	0.68	DOWNSTREAM mir-4978 INTRON mam
X	5941572	X_5941572_SNP [dm3] X_6047539_SNP [dm6]	C	T	2.390e^-4	0.68	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo
3R	9783668	3R_9783668_SNP [dm3] 3R_13957946_SNP [dm6]	T	A	2.392e^-4	0.68	UPSTREAM Ipp INTERGENIC	TF binding site mE1_TFBS_cad
2R	6237842	2R_6237842_SNP [dm3] 2R_10350337_SNP [dm6]	C	T	2.394e^-4	0.68	INTRON CG42732
2L	950549	2L_950549_SNP [dm3] 2L_950549_SNP [dm6]	T	C	2.397e^-4	0.68	SYNONYMOUS_CODING CG4341
3R	11390402	3R_11390402_SNP [dm3] 3R_15564680_SNP [dm6]	T	C	2.400e^-4	0.68	INTERGENIC
3R	24278610	3R_24278610_SNP [dm3] 3R_28452888_SNP [dm6]	G	T	2.401e^-4	0.68	INTRON beat-VI
3R	23418478	3R_23418478_SNP [dm3] 3R_27592756_SNP [dm6]	T	G	2.403e^-4	0.68	INTRON CG5639
2L	5133369	2L_5133369_SNP [dm3] 2L_5133369_SNP [dm6]	C	T	2.405e^-4	0.68	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad
3R	6850646	3R_6850646_SNP [dm3] 3R_11024924_SNP [dm6]	A	T	2.407e^-4	0.68	INTRON CG34114
3R	11076750	3R_11076750_SNP [dm3] 3R_15251028_SNP [dm6]	G	A	2.409e^-4	0.68	INTRON CG42404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17098683	2R_17098683_SNP [dm3] 2R_21211178_SNP [dm6]	G	A	2.412e^-4	0.68	UTR_5_PRIME CG44245 DOWNSTREAM Glycogenin INTRON CG44245
3R	26937677	3R_26937677_SNP [dm3] 3R_31111955_SNP [dm6]	C	A	2.413e^-4	0.68	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15000939	2L_15000939_SNP [dm3] 2L_15000939_SNP [dm6]	G	A	2.426e^-4	0.68	INTERGENIC
3R	3472168	3R_3472168_SNP [dm3] 3R_7646446_SNP [dm6]	T	C	2.427e^-4	0.68	INTERGENIC
2L	2073982	2L_2073982_SNP [dm3] 2L_2073982_SNP [dm6]	G	A	2.428e^-4	0.68	INTRON dpr3
2L	9878661	2L_9878661_SNP [dm3] 2L_9878661_SNP [dm6]	C	T	2.430e^-4	0.68	INTRON nAChRalpha6
3L	9319489	3L_9319489_SNP [dm3] 3L_9326389_SNP [dm6]	T	A	2.431e^-4	0.68	INTERGENIC
2L	2511041	2L_2511041_SNP [dm3] 2L_2511041_SNP [dm6]	A	G	2.434e^-4	0.68	INTERGENIC
3R	23299380	3R_23299380_SNP [dm3] 3R_27473658_SNP [dm6]	T	C	2.442e^-4	0.682	INTERGENIC
2R	7463671	2R_7463671_SNP [dm3] 2R_11576166_SNP [dm6]	G	T	2.456e^-4	0.684	INTERGENIC
3L	9602798	3L_9602798_SNP [dm3] 3L_9609698_SNP [dm6]	G	A	2.460e^-4	0.685	SYNONYMOUS_CODING CG3280
2R	6961057	2R_6961057_SNP [dm3] 2R_11073552_SNP [dm6]	C	G	2.484e^-4	0.689	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	8022861	3L_8022861_SNP [dm3] 3L_8029761_SNP [dm6]	G	A	2.489e^-4	0.689	INTRON nmo
3R	19860086	3R_19860086_SNP [dm3] 3R_24034364_SNP [dm6]	C	T	2.499e^-4	0.689	UTR_3_PRIME Miro DOWNSTREAM Ime4
3L	3571794	3L_3571794_SNP [dm3] 3L_3571794_SNP [dm6]	C	A	2.500e^-4	0.689	INTRON Eip63E
2R	14386439	2R_14386439_SNP [dm3] 2R_18498934_SNP [dm6]	A	T	2.502e^-4	0.689	UPSTREAM CG30116 INTERGENIC
X	4203134	X_4203134_SNP [dm3] X_4309101_SNP [dm6]	T	A	2.503e^-4	0.689	INTERGENIC
2L	15134780	2L_15134780_SNP [dm3] 2L_15134780_SNP [dm6]	T	G	2.505e^-4	0.689	INTERGENIC
3L	21293353	3L_21293353_SNP [dm3] 3L_21300253_SNP [dm6]	T	A	2.512e^-4	0.689	UPSTREAM Cpr78Cc INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	845608	3L_845608_SNP [dm3] 3L_845608_SNP [dm6]	C	G	2.514e^-4	0.689	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo
2L	14993506	2L_14993506_SNP [dm3] 2L_14993506_SNP [dm6]	C	T	2.521e^-4	0.689	INTRON mol
3L	5834901	3L_5834901_SNP [dm3] 3L_5841801_SNP [dm6]	A	G	2.528e^-4	0.689	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	854757	3L_854757_SNP [dm3] 3L_854757_SNP [dm6]	G	A	2.528e^-4	0.689	SYNONYMOUS_CODING dpr20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20344351	X_20344351_SNP [dm3] X_20473324_SNP [dm6]	G	A	2.531e^-4	0.689	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10963729	2L_10963729_SNP [dm3] 2L_10963729_SNP [dm6]	T	A	2.536e^-4	0.689	UTR_5_PRIME dpr2 INTRON dpr2
2L	2835447	2L_2835447_SNP [dm3] 2L_2835447_SNP [dm6]	C	T	2.543e^-4	0.689	SYNONYMOUS_CODING CG3119 DOWNSTREAM CG3119
2L	5134615	2L_5134615_SNP [dm3] 2L_5134615_SNP [dm6]	A	C	2.544e^-4	0.689	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
3L	13228496	3L_13228496_SNP [dm3] 3L_13235396_SNP [dm6]	A	C	2.545e^-4	0.689	INTRON caps
2L	20294204	2L_20294204_SNP [dm3] 2L_20294204_SNP [dm6]	A	T	2.548e^-4	0.689	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	686669	X_686669_SNP [dm3] X_792636_SNP [dm6]	A	T	2.557e^-4	0.689	UPSTREAM CG16989 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14386440	2R_14386440_DEL [dm3] 2R_18498935_DEL [dm6]	CTT	C	2.560e^-4	0.689	UPSTREAM CG30116 INTERGENIC
3R	19747552	3R_19747552_SNP [dm3] 3R_23921830_SNP [dm6]	C	A	2.562e^-4	0.689	INTRON sba	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11076861	2R_11076861_SNP [dm3] 2R_15189356_SNP [dm6]	T	G	2.569e^-4	0.689	UTR_3_PRIME igl
2L	7263994	2L_7263994_SNP [dm3] 2L_7263994_SNP [dm6]	C	T	2.569e^-4	0.689	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19123689	X_19123689_SNP [dm3] X_19229656_SNP [dm6]	T	C	2.572e^-4	0.689	INTRON CG7884	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	905245	3L_905245_SNP [dm3] 3L_905245_SNP [dm6]	A	T	2.572e^-4	0.689	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9759501	2L_9759501_SNP [dm3] 2L_9759501_SNP [dm6]	G	T	2.578e^-4	0.689	INTRON zf30C	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
X	8779544	X_8779544_SNP [dm3] X_8885511_SNP [dm6]	A	C	2.578e^-4	0.689	INTRON Moe
2R	10767749	2R_10767749_SNP [dm3] 2R_14880244_SNP [dm6]	A	G	2.580e^-4	0.689	SYNONYMOUS_CODING Cyp6a9 DOWNSTREAM Cyp6a19	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	4324697	2R_4324697_SNP [dm3] 2R_8437192_SNP [dm6]	G	A	2.584e^-4	0.689	UPSTREAM Lcp4 INTERGENIC
3R	6850650	3R_6850650_SNP [dm3] 3R_11024928_SNP [dm6]	C	A	2.591e^-4	0.689	INTRON CG34114
3L	5844873	3L_5844873_SNP [dm3] 3L_5851773_SNP [dm6]	A	G	2.596e^-4	0.689	INTERGENIC
3R	16976093	3R_16976093_SNP [dm3] 3R_21150371_SNP [dm6]	T	C	2.597e^-4	0.689	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
3L	11653449	3L_11653449_SNP [dm3] 3L_11660349_SNP [dm6]	G	A	2.598e^-4	0.689	INTRON CG32085
X	3240574	X_3240574_SNP [dm3] X_3346541_SNP [dm6]	T	C	2.610e^-4	0.691	INTRON CR44886	TF binding site BDTNP1_TFBS_twi
3L	3563697	3L_3563697_DEL [dm3] 3L_3563697_DEL [dm6]	ATCGTA	A	2.615e^-4	0.692	INTRON Eip63E
2R	6874668	2R_6874668_DEL [dm3] 2R_10987163_DEL [dm6]	GG	G	2.620e^-4	0.692	INTRON luna
2R	15788436	2R_15788436_SNP [dm3] 2R_19900931_SNP [dm6]	A	G	2.625e^-4	0.692	INTERGENIC
X	18183956	X_18183956_SNP [dm3] X_18289923_SNP [dm6]	T	G	2.631e^-4	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9951994	2L_9951994_SNP [dm3] 2L_9951994_SNP [dm6]	T	C	2.631e^-4	0.692	DOWNSTREAM CG13126 INTERGENIC
3L	4035868	3L_4035868_SNP [dm3] 3L_4035868_SNP [dm6]	T	G	2.636e^-4	0.692	NON_SYNONYMOUS_CODING Gr64f DOWNSTREAM Gr64d & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3L	12641484	3L_12641484_SNP [dm3] 3L_12648384_SNP [dm6]	T	G	2.640e^-4	0.692	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17463442	3R_17463442_SNP [dm3] 3R_21637720_SNP [dm6]	A	G	2.649e^-4	0.694	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16148529	X_16148529_SNP [dm3] X_16254496_SNP [dm6]	C	T	2.667e^-4	0.698	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16516528	3R_16516528_SNP [dm3] 3R_20690806_SNP [dm6]	A	G	2.676e^-4	0.698	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12098482	3L_12098482_SNP [dm3] 3L_12105382_SNP [dm6]	T	G	2.677e^-4	0.698	INTERGENIC
2L	15134806	2L_15134806_SNP [dm3] 2L_15134806_SNP [dm6]	C	T	2.686e^-4	0.698	INTERGENIC
2L	15134814	2L_15134814_SNP [dm3] 2L_15134814_SNP [dm6]	C	G	2.686e^-4	0.698	INTERGENIC
3R	21491664	3R_21491664_SNP [dm3] 3R_25665942_SNP [dm6]	A	C	2.686e^-4	0.698	UTR_5_PRIME Lgr3 DOWNSTREAM RASSF8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18332323	3L_18332323_SNP [dm3] 3L_18339223_SNP [dm6]	C	G	2.693e^-4	0.699	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16515128	3L_16515128_SNP [dm3] 3L_16522028_SNP [dm6]	C	T	2.699e^-4	0.699	INTRON CG43373
2L	15134776	2L_15134776_INS [dm3] 2L_15134776_INS [dm6]	G	ATGGCACGTTTCGAAT...	2.705e^-4	0.699	INTERGENIC
3R	16678819	3R_16678819_DEL [dm3] 3R_20853097_DEL [dm6]	GT	A	2.708e^-4	0.699	DOWNSTREAM mir-1011 INTRON Ir93a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15032908	2L_15032908_SNP [dm3] 2L_15032908_SNP [dm6]	A	T	2.709e^-4	0.699	UTR_3_PRIME GABA-B-R1
2L	8105840	2L_8105840_SNP [dm3] 2L_8105840_SNP [dm6]	G	T	2.713e^-4	0.699	INTRON Bsg
3L	16643469	3L_16643469_SNP [dm3] 3L_16650369_SNP [dm6]	G	A	2.718e^-4	0.699	SYNONYMOUS_CODING Baldspot
X	8041930	X_8041930_SNP [dm3] X_8147897_SNP [dm6]	C	T	2.723e^-4	0.699	UPSTREAM CG15336 & 1 other DOWNSTREAM CG2129 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	1672290	3L_1672290_SNP [dm3] 3L_1672290_SNP [dm6]	T	C	2.727e^-4	0.699	SYNONYMOUS_CODING CG13930	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13835091	3R_13835091_SNP [dm3] 3R_18009369_SNP [dm6]	A	T	2.730e^-4	0.699	INTRON cpo
3L	5860192	3L_5860192_SNP [dm3] 3L_5867092_SNP [dm6]	T	A	2.751e^-4	0.702	INTERGENIC
3R	23668756	3R_23668756_SNP [dm3] 3R_27843034_SNP [dm6]	C	T	2.754e^-4	0.702	INTRON CG34353
2R	18818433	2R_18818433_SNP [dm3] 2R_22930910_SNP [dm6]	C	G	2.756e^-4	0.702	SYNONYMOUS_CODING CG42678 INTRON CG42678	TF binding site mE1_TFBS_inv
3R	22366649	3R_22366649_SNP [dm3] 3R_26540927_SNP [dm6]	T	C	2.757e^-4	0.702	INTRON scrib
2L	13983124	2L_13983124_SNP [dm3] 2L_13983124_SNP [dm6]	T	C	2.771e^-4	0.703	UTR_3_PRIME NimC2 & 1 other DOWNSTREAM NimC2
2R	12523964	2R_12523964_SNP [dm3] 2R_16636459_SNP [dm6]	A	C	2.774e^-4	0.703	INTRON Alk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	804024	2L_804024_SNP [dm3] 2L_804024_SNP [dm6]	A	T	2.778e^-4	0.703	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5134617	2L_5134617_SNP [dm3] 2L_5134617_SNP [dm6]	A	T	2.783e^-4	0.703	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
3L	14336276	3L_14336276_SNP [dm3] 3L_14343176_SNP [dm6]	A	T	2.783e^-4	0.703	INTRON fz
2L	735664	2L_735664_SNP [dm3] 2L_735664_SNP [dm6]	C	T	2.786e^-4	0.703	INTERGENIC
2R	13516172	2R_13516172_SNP [dm3] 2R_17628667_SNP [dm6]	T	A	2.788e^-4	0.703	UTR_3_PRIME rhi INTRON CG10936
3L	8323060	3L_8323060_SNP [dm3] 3L_8329960_SNP [dm6]	T	A	2.790e^-4	0.703	SYNONYMOUS_CODING CG34462
2L	20294194	2L_20294194_SNP [dm3] 2L_20294194_SNP [dm6]	A	T	2.794e^-4	0.703	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	6291694	X_6291694_SNP [dm3] X_6397661_SNP [dm6]	T	G	2.797e^-4	0.703	INTERGENIC
3L	16810366	3L_16810366_SNP [dm3] 3L_16817266_SNP [dm6]	T	A	2.799e^-4	0.703	INTRON nudC & 1 other
2R	3575959	2R_3575959_SNP [dm3] 2R_7688454_SNP [dm6]	C	A	2.806e^-4	0.703	INTRON CG1399
3R	21178074	3R_21178074_SNP [dm3] 3R_25352352_SNP [dm6]	G	T	2.815e^-4	0.705	DOWNSTREAM Fur1 INTRON Fur1
2R	7058656	2R_7058656_SNP [dm3] 2R_11171151_SNP [dm6]	A	T	2.826e^-4	0.707	INTRON shn & 1 other
3L	7852532	3L_7852532_SNP [dm3] 3L_7859432_SNP [dm6]	G	T	2.864e^-4	0.714	INTRON Pdp1
3L	9614934	3L_9614934_SNP [dm3] 3L_9621834_SNP [dm6]	C	T	2.867e^-4	0.714	SYNONYMOUS_CODING LanB2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1303587	2L_1303587_SNP [dm3] 2L_1303587_SNP [dm6]	G	A	2.869e^-4	0.714	INTERGENIC
2R	6814077	2R_6814077_SNP [dm3] 2R_10926572_SNP [dm6]	C	T	2.877e^-4	0.714	INTERGENIC
3L	12655524	3L_12655524_SNP [dm3] 3L_12662424_SNP [dm6]	A	T	2.878e^-4	0.714	DOWNSTREAM CR44552 INTERGENIC
2L	10551758	2L_10551758_SNP [dm3] 2L_10551758_SNP [dm6]	C	T	2.879e^-4	0.714	INTRON Trim9	TF binding site mE1_TFBS_cad
2R	7121593	2R_7121593_SNP [dm3] 2R_11234088_SNP [dm6]	A	G	2.889e^-4	0.715	NON_SYNONYMOUS_CODING CG13228 UPSTREAM CG13218
2L	21139667	2L_21139667_SNP [dm3] 2L_21139667_SNP [dm6]	A	C	2.891e^-4	0.715	INTRON Dap160	TF binding site mE1_TFBS_cad
3R	4672518	3R_4672518_DEL [dm3] 3R_8846796_DEL [dm6]	AATACAAAAACTTTCA...	A	2.900e^-4	0.716	UPSTREAM pyd INTRON pyd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	21027492	3R_21027492_SNP [dm3] 3R_25201770_SNP [dm6]	T	A	2.902e^-4	0.716	INTRON CG13654 & 1 other
2R	16667922	2R_16667922_SNP [dm3] 2R_20780417_SNP [dm6]	C	T	2.912e^-4	0.717	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6257182	X_6257182_SNP [dm3] X_6363149_SNP [dm6]	T	G	2.925e^-4	0.719	UPSTREAM swaPsi DOWNSTREAM swa EXON swaPsi	TF binding site mE1_TFBS_inv
X	5442720	X_5442720_SNP [dm3] X_5548687_SNP [dm6]	A	G	2.928e^-4	0.719	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3L	15046527	3L_15046527_SNP [dm3] 3L_15053427_SNP [dm6]	G	T	2.934e^-4	0.719	UPSTREAM CG13461 & 1 other DOWNSTREAM CG18649 INTRON Sytbeta
X	9450034	X_9450034_SNP [dm3] X_9556001_SNP [dm6]	T	C	2.934e^-4	0.719	SYNONYMOUS_CODING CG15317 DOWNSTREAM RpS28b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	4998407	3L_4998407_SNP [dm3] 3L_4998407_SNP [dm6]	G	A	2.939e^-4	0.719	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11912492	X_11912492_INS [dm3] X_12018459_INS [dm6]	T	TT	2.942e^-4	0.719	UPSTREAM CG15735 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Ubx
3R	16698787	3R_16698787_SNP [dm3] 3R_20873065_SNP [dm6]	A	C	2.945e^-4	0.719	UPSTREAM TotB INTRON TotC
2R	11862840	2R_11862840_SNP [dm3] 2R_15975335_SNP [dm6]	T	A	2.951e^-4	0.719	NON_SYNONYMOUS_CODING Strn-Mlck
X	14377234	X_14377234_SNP [dm3] X_14483201_SNP [dm6]	C	T	2.952e^-4	0.719	INTERGENIC
2L	15134778	2L_15134778_SNP [dm3] 2L_15134778_SNP [dm6]	T	G	2.961e^-4	0.72	INTERGENIC
3R	23504176	3R_23504176_SNP [dm3] 3R_27678454_SNP [dm6]	T	C	2.962e^-4	0.72	SYNONYMOUS_CODING CG5590 UPSTREAM CG12883	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	29084	2R_29084_SNP [dm3] 2R_4141579_SNP [dm6]	G	C	2.966e^-4	0.72	INTERGENIC
3R	6311949	3R_6311949_SNP [dm3] 3R_10486227_SNP [dm6]	G	T	2.970e^-4	0.72	INTERGENIC
X	3485387	X_3485387_SNP [dm3] X_3591354_SNP [dm6]	T	G	2.976e^-4	0.72	INTRON AstA-R1
2R	19660497	2R_19660497_SNP [dm3] 2R_23772974_SNP [dm6]	G	A	2.982e^-4	0.72	INTRON CG9850
3R	16352889	3R_16352889_SNP [dm3] 3R_20527167_SNP [dm6]	A	T	2.985e^-4	0.72	INTERGENIC
2L	3276164	2L_3276164_SNP [dm3] 2L_3276164_SNP [dm6]	A	G	2.994e^-4	0.721	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9553597	3L_9553597_SNP [dm3] 3L_9560497_SNP [dm6]	C	T	3.011e^-4	0.721	INTRON CG42673
3L	9553648	3L_9553648_SNP [dm3] 3L_9560548_SNP [dm6]	G	A	3.011e^-4	0.721	INTRON CG42673
2L	9612730	2L_9612730_SNP [dm3] 2L_9612730_SNP [dm6]	G	C	3.017e^-4	0.721	UPSTREAM Trx-2 DOWNSTREAM gcm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1921549	3L_1921549_SNP [dm3] 3L_1921549_SNP [dm6]	T	G	3.019e^-4	0.721	SYNONYMOUS_CODING Dbx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9433994	X_9433994_SNP [dm3] X_9539961_SNP [dm6]	C	G	3.021e^-4	0.721	INTRON CG32700
3L	15112661	3L_15112661_SNP [dm3] 3L_15119561_SNP [dm6]	A	G	3.022e^-4	0.721	SYNONYMOUS_CODING Cep135 DOWNSTREAM CG16959	TF binding site mE1_TFBS_inv
2L	1505174	2L_1505174_SNP [dm3] 2L_1505174_SNP [dm6]	A	C	3.024e^-4	0.721	DOWNSTREAM CR44064 INTERGENIC
3R	4263751	3R_4263751_SNP [dm3] 3R_8438029_SNP [dm6]	C	G	3.026e^-4	0.721	INTRON CG45263
X	18311049	X_18311049_SNP [dm3] X_18417016_SNP [dm6]	G	A	3.030e^-4	0.721	DOWNSTREAM CG15056 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	17092812	2R_17092812_SNP [dm3] 2R_21205307_SNP [dm6]	C	T	3.032e^-4	0.721	SPLICE_SITE_REGION Glycogenin INTRON CG44245 & 1 other
3R	17698351	3R_17698351_SNP [dm3] 3R_21872629_SNP [dm6]	C	T	3.041e^-4	0.722	SYNONYMOUS_CODING CG31431
3L	5843200	3L_5843200_SNP [dm3] 3L_5850100_SNP [dm6]	C	T	3.041e^-4	0.722	INTERGENIC
2R	6119920	2R_6119920_SNP [dm3] 2R_10232415_SNP [dm6]	C	G	3.047e^-4	0.722	SYNONYMOUS_CODING Hr46 UTR_3_PRIME CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16667900	2R_16667900_DEL [dm3] 2R_20780395_DEL [dm6]	GGAAT	G	3.050e^-4	0.722	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5872349	X_5872349_SNP [dm3] X_5978316_SNP [dm6]	T	A	3.061e^-4	0.723	INTRON Grip
2L	2150573	2L_2150573_SNP [dm3] 2L_2150573_SNP [dm6]	T	G	3.061e^-4	0.723	SYNONYMOUS_CODING CG7261	TF binding site mE1_TFBS_sens
3L	845678	3L_845678_SNP [dm3] 3L_845678_SNP [dm6]	C	A	3.064e^-4	0.723	NON_SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo
3R	26126977	3R_26126977_SNP [dm3] 3R_30301255_SNP [dm6]	A	G	3.069e^-4	0.723	INTRON hdc
3L	12762449	3L_12762449_SNP [dm3] 3L_12769349_SNP [dm6]	A	G	3.078e^-4	0.724	SYNONYMOUS_CODING Hip1 DOWNSTREAM CG32113
2R	10834181	2R_10834181_SNP [dm3] 2R_14946676_SNP [dm6]	A	G	3.089e^-4	0.726	INTRON aPKC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9615439	2L_9615439_SNP [dm3] 2L_9615439_SNP [dm6]	C	T	3.093e^-4	0.726	SYNONYMOUS_CODING Trx-2
3L	7692569	3L_7692569_DEL [dm3] 3L_7699469_DEL [dm6]	TTTAAA	T	3.101e^-4	0.726	INTRON CG32373 & 1 other
2L	6810090	2L_6810090_SNP [dm3] 2L_6810090_SNP [dm6]	C	A	3.105e^-4	0.726	INTERGENIC
2R	17928307	2R_17928307_SNP [dm3] 2R_22040802_SNP [dm6]	C	A	3.106e^-4	0.726	DOWNSTREAM PpD5 INTERGENIC
2L	7077994	2L_7077994_SNP [dm3] 2L_7077994_SNP [dm6]	A	G	3.121e^-4	0.727	DOWNSTREAM CR44611 INTRON Pvf2
3R	21027545	3R_21027545_SNP [dm3] 3R_25201823_SNP [dm6]	T	C	3.122e^-4	0.727	INTRON CG13654 & 1 other
3R	22136701	3R_22136701_SNP [dm3] 3R_26310979_SNP [dm6]	G	C	3.123e^-4	0.727	INTERGENIC
3L	7535084	3L_7535084_SNP [dm3] 3L_7541984_SNP [dm6]	G	A	3.126e^-4	0.727	SYNONYMOUS_CODING CG32376 UPSTREAM CG32374	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25856806	3R_25856806_SNP [dm3] 3R_30031084_SNP [dm6]	G	C	3.132e^-4	0.727	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3410977	2L_3410977_SNP [dm3] 2L_3410977_SNP [dm6]	A	T	3.132e^-4	0.727	SYNONYMOUS_CODING CG8840 INTRON pgant2
3R	9245814	3R_9245814_SNP [dm3] 3R_13420092_SNP [dm6]	T	A	3.138e^-4	0.727	UPSTREAM Ir87a INTERGENIC
2L	12804353	2L_12804353_SNP [dm3] 2L_12804353_SNP [dm6]	T	C	3.140e^-4	0.727	INTERGENIC
2L	1621504	2L_1621504_SNP [dm3] 2L_1621504_SNP [dm6]	G	T	3.142e^-4	0.727	EXON CR44603
3R	9660010	3R_9660010_SNP [dm3] 3R_13834288_SNP [dm6]	A	T	3.146e^-4	0.727	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
X	18047937	X_18047937_SNP [dm3] X_18153904_SNP [dm6]	A	C	3.165e^-4	0.728	INTERGENIC
X	14098643	X_14098643_DEL [dm3] X_14204610_DEL [dm6]	AA	A	3.179e^-4	0.728	UTR_3_PRIME l_1_G0469 INTRON l_1_G0007	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11117223	3L_11117223_SNP [dm3] 3L_11124123_SNP [dm6]	G	A	3.185e^-4	0.728	UPSTREAM Ufd1-like INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5701097	3L_5701097_SNP [dm3] 3L_5707997_SNP [dm6]	G	A	3.187e^-4	0.728	INTRON sif
2L	4363289	2L_4363289_SNP [dm3] 2L_4363289_SNP [dm6]	A	G	3.197e^-4	0.728	DOWNSTREAM CR45363 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10456208	3L_10456208_SNP [dm3] 3L_10463108_SNP [dm6]	C	T	3.203e^-4	0.728	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	24988755	3R_24988755_SNP [dm3] 3R_29163033_SNP [dm6]	A	G	3.213e^-4	0.728	SYNONYMOUS_CODING CG11897
2R	4305146	2R_4305146_INS [dm3] 2R_8417641_INS [dm6]	A	ACATCCACACA...	3.217e^-4	0.728	FRAME_SHIFT CG43296
3R	11598617	3R_11598617_SNP [dm3] 3R_15772895_SNP [dm6]	A	T	3.223e^-4	0.728	INTERGENIC
2R	12207594	2R_12207594_SNP [dm3] 2R_16320089_SNP [dm6]	G	T	3.223e^-4	0.728	SYNONYMOUS_CODING CG8060 DOWNSTREAM CG30096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9741197	2L_9741197_SNP [dm3] 2L_9741197_SNP [dm6]	T	C	3.224e^-4	0.728	INTRON Nckx30C
3L	9316685	3L_9316685_SNP [dm3] 3L_9323585_SNP [dm6]	C	T	3.225e^-4	0.728	INTERGENIC
3R	8060407	3R_8060407_SNP [dm3] 3R_12234685_SNP [dm6]	A	C	3.227e^-4	0.728	UPSTREAM Cyp313a5 DOWNSTREAM Cyp313a2 INTERGENIC
3R	21027496	3R_21027496_SNP [dm3] 3R_25201774_SNP [dm6]	T	G	3.233e^-4	0.728	INTRON CG13654 & 1 other
2L	8661612	2L_8661612_SNP [dm3] 2L_8661612_SNP [dm6]	T	A	3.238e^-4	0.728	INTRON Sema-1a
X	11777395	X_11777395_SNP [dm3] X_11883362_SNP [dm6]	A	G	3.241e^-4	0.728	SYNONYMOUS_CODING CG10353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15748029	2R_15748029_SNP [dm3] 2R_19860524_SNP [dm6]	A	C	3.242e^-4	0.728	UPSTREAM CR44570 INTRON CR44571
2L	464760	2L_464760_SNP [dm3] 2L_464760_SNP [dm6]	G	A	3.249e^-4	0.728	SYNONYMOUS_CODING CG4297	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16868727	2R_16868727_SNP [dm3] 2R_20981222_SNP [dm6]	T	C	3.252e^-4	0.728	INTRON CG9313	TF binding site mE1_TFBS_cad
X	2796099	X_2796099_SNP [dm3] X_2902066_SNP [dm6]	A	C	3.254e^-4	0.728	INTRON kirre
2R	6995836	2R_6995836_SNP [dm3] 2R_11108331_SNP [dm6]	A	T	3.257e^-4	0.728	INTRON luna
2R	7183727	2R_7183727_SNP [dm3] 2R_11296222_SNP [dm6]	T	G	3.259e^-4	0.728	UPSTREAM CG42336 INTRON CG42336	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7055577	2R_7055577_SNP [dm3] 2R_11168072_SNP [dm6]	A	T	3.262e^-4	0.728	INTRON shn & 1 other
3L	11264702	3L_11264702_SNP [dm3] 3L_11271602_SNP [dm6]	A	T	3.273e^-4	0.728	INTERGENIC
3R	19954767	3R_19954767_SNP [dm3] 3R_24129045_SNP [dm6]	G	C	3.274e^-4	0.728	SYNONYMOUS_CODING CG5463 DOWNSTREAM Rootletin	TF binding site mE1_TFBS_cad
2L	22020550	2L_22020550_SNP [dm3] 2L_22020550_SNP [dm6]	G	C	3.275e^-4	0.728	DOWNSTREAM CR33987 INTRON tio
2L	1455521	2L_1455521_SNP [dm3] 2L_1455521_SNP [dm6]	G	T	3.287e^-4	0.728	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23330127	3R_23330127_SNP [dm3] 3R_27504405_SNP [dm6]	A	G	3.287e^-4	0.728	INTERGENIC
3L	5860241	3L_5860241_SNP [dm3] 3L_5867141_SNP [dm6]	T	A	3.288e^-4	0.728	INTERGENIC
X	453066	X_453066_SNP [dm3] X_559033_SNP [dm6]	G	A	3.290e^-4	0.728	INTRON Appl
2L	756787	2L_756787_SNP [dm3] 2L_756787_SNP [dm6]	T	C	3.291e^-4	0.728	SYNONYMOUS_CODING GABA-B-R3 UTR_3_PRIME GABA-B-R3	TF binding site mE1_TFBS_chinmo
2R	7053182	2R_7053182_SNP [dm3] 2R_11165677_SNP [dm6]	C	G	3.297e^-4	0.728	INTRON shn & 1 other
X	10061066	X_10061066_SNP [dm3] X_10167033_SNP [dm6]	G	A	3.309e^-4	0.728	INTRON CR44894 & 1 other
X	5534861	X_5534861_INS [dm3] X_5640828_INS [dm6]	A	AC	3.313e^-4	0.728	INTRON CG42492
3R	25314026	3R_25314026_SNP [dm3] 3R_29488304_SNP [dm6]	T	C	3.316e^-4	0.728	INTRON CG2321	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7005673	2R_7005673_SNP [dm3] 2R_11118168_SNP [dm6]	C	A	3.318e^-4	0.728	UTR_3_PRIME Cyp12d1-p
3L	7246328	3L_7246328_SNP [dm3] 3L_7253228_SNP [dm6]	C	A	3.319e^-4	0.728	DOWNSTREAM CR43470 INTRON CG14830
2L	1500206	2L_1500206_SNP [dm3] 2L_1500206_SNP [dm6]	A	G	3.323e^-4	0.728	SPLICE_SITE_REGION CG18131 UTR_5_PRIME CG18131 UPSTREAM CR44064 DOWNSTREAM CG7420 INTRON CG18131
X	3263289	X_3263289_SNP [dm3] X_3369256_SNP [dm6]	A	T	3.330e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn
3L	16810424	3L_16810424_SNP [dm3] 3L_16817324_SNP [dm6]	A	T	3.334e^-4	0.728	INTRON nudC & 1 other
3R	8860578	3R_8860578_SNP [dm3] 3R_13034856_SNP [dm6]	G	A	3.334e^-4	0.728	SYNONYMOUS_CODING ry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19182400	3R_19182400_SNP [dm3] 3R_23356678_SNP [dm6]	C	T	3.334e^-4	0.728	SYNONYMOUS_CODING Sec13 UPSTREAM ATPsyn-Cf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15009202	2L_15009202_SNP [dm3] 2L_15009202_SNP [dm6]	T	G	3.340e^-4	0.728	NON_SYNONYMOUS_CODING l_2_35Bc UPSTREAM l_2_35Bd DOWNSTREAM NC2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10110102	2L_10110102_SNP [dm3] 2L_10110102_SNP [dm6]	C	T	3.344e^-4	0.728	INTRON CG44153 & 1 other
2R	6882526	2R_6882526_SNP [dm3] 2R_10995021_SNP [dm6]	A	T	3.345e^-4	0.728	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21630432	3L_21630432_SNP [dm3] 3L_21637332_SNP [dm6]	C	T	3.351e^-4	0.728	INTRON CG32444
X	18903731	X_18903731_INS [dm3] X_19009698_INS [dm6]	A	ATCATCTACA	3.351e^-4	0.728	INTRON CG43759
3R	21030859	3R_21030859_SNP [dm3] 3R_25205137_SNP [dm6]	T	A	3.360e^-4	0.728	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
2R	7031222	2R_7031222_SNP [dm3] 2R_11143717_SNP [dm6]	T	G	3.361e^-4	0.728	UPSTREAM CG13229 INTRON CG13229
X	21353622	X_21353622_SNP [dm3] X_21482595_SNP [dm6]	C	T	3.361e^-4	0.728	DOWNSTREAM CR45511 INTERGENIC
X	14075482	X_14075482_SNP [dm3] X_14181449_SNP [dm6]	C	A	3.364e^-4	0.728	SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo
3L	9316674	3L_9316674_SNP [dm3] 3L_9323574_SNP [dm6]	T	G	3.364e^-4	0.728	INTERGENIC
2L	22566878	2L_22566878_SNP [dm3] 2L_22674146_SNP [dm6]	C	T	3.367e^-4	0.728	INTRON CG40006
2R	7458793	2R_7458793_SNP [dm3] 2R_11571288_SNP [dm6]	G	C	3.368e^-4	0.728	INTERGENIC
2L	7250148	2L_7250148_SNP [dm3] 2L_7250148_SNP [dm6]	T	C	3.369e^-4	0.728	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	704096	X_704096_SNP [dm3] X_810063_SNP [dm6]	G	A	3.382e^-4	0.728	SYNONYMOUS_CODING CG43867
2L	13533000	2L_13533000_SNP [dm3] 2L_13533000_SNP [dm6]	C	G	3.389e^-4	0.728	SYNONYMOUS_CODING CG33645 DOWNSTREAM CG33644 INTRON B4
2L	11334698	2L_11334698_SNP [dm3] 2L_11334698_SNP [dm6]	C	T	3.389e^-4	0.728	INTERGENIC
3L	9553365	3L_9553365_SNP [dm3] 3L_9560265_SNP [dm6]	T	A	3.391e^-4	0.728	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16810422	3L_16810422_SNP [dm3] 3L_16817322_SNP [dm6]	T	G	3.392e^-4	0.728	INTRON nudC & 1 other
2R	6995213	2R_6995213_SNP [dm3] 2R_11107708_SNP [dm6]	A	G	3.397e^-4	0.728	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6850619	3R_6850619_SNP [dm3] 3R_11024897_SNP [dm6]	A	G	3.404e^-4	0.728	INTRON CG34114
3R	22367808	3R_22367808_SNP [dm3] 3R_26542086_SNP [dm6]	A	G	3.411e^-4	0.728	INTRON scrib	TF binding site BDTNP1_TFBS_dl
3R	9898511	3R_9898511_SNP [dm3] 3R_14072789_SNP [dm6]	G	A	3.415e^-4	0.728	INTRON foxo
2L	15031797	2L_15031797_SNP [dm3] 2L_15031797_SNP [dm6]	G	A	3.422e^-4	0.728	UPSTREAM CG31832 INTRON GABA-B-R1
2R	15997222	2R_15997222_SNP [dm3] 2R_20109717_SNP [dm6]	C	T	3.423e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Trl
3R	22511243	3R_22511243_SNP [dm3] 3R_26685521_SNP [dm6]	G	T	3.424e^-4	0.728	INTERGENIC
X	3458602	X_3458602_SNP [dm3] X_3564569_SNP [dm6]	G	A	3.426e^-4	0.728	INTRON CG32791 & 1 other
3L	22996141	3L_22996141_SNP [dm3] 3L_23003041_SNP [dm6]	C	T	3.430e^-4	0.728	INTRON nrm	TF binding site BDTNP1_TFBS_dl
3R	26616561	3R_26616561_DEL [dm3] 3R_30790839_DEL [dm6]	GATAG	G	3.430e^-4	0.728	UTR_3_PRIME wts DOWNSTREAM mir-1013
X	6629602	X_6629602_SNP [dm3] X_6735569_SNP [dm6]	A	C	3.431e^-4	0.728	INTRON CG3168 & 1 other
3L	18332347	3L_18332347_SNP [dm3] 3L_18339247_SNP [dm6]	T	G	3.433e^-4	0.728	INTERGENIC	TF binding site mE1_TFBS_cad
X	5938680	X_5938680_SNP [dm3] X_6044647_SNP [dm6]	T	C	3.444e^-4	0.728	INTRON CG5937	TF binding site mE1_TFBS_chinmo
3L	13012888	3L_13012888_SNP [dm3] 3L_13019788_SNP [dm6]	C	T	3.457e^-4	0.728	UTR_3_PRIME AdenoK UPSTREAM CR45445 DOWNSTREAM AdenoK & 1 other
2L	22320834	2L_22320834_SNP [dm3] 2L_22320834_SNP [dm6]	C	G	3.457e^-4	0.728	INTRON CG17018
X	21361398	X_21361398_SNP [dm3] X_21490371_SNP [dm6]	C	G	3.457e^-4	0.728	INTERGENIC
2R	16667914	2R_16667914_SNP [dm3] 2R_20780409_SNP [dm6]	G	A	3.460e^-4	0.728	UPSTREAM CG43711 EXON CR44666	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13456171	3R_13456171_SNP [dm3] 3R_17630449_SNP [dm6]	C	T	3.462e^-4	0.728	UPSTREAM CG43175 DOWNSTREAM tRNA:CR31569 INTERGENIC
3L	6871284	3L_6871284_SNP [dm3] 3L_6878184_SNP [dm6]	A	G	3.466e^-4	0.728	INTERGENIC
3L	5834623	3L_5834623_SNP [dm3] 3L_5841523_SNP [dm6]	A	T	3.467e^-4	0.728	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	5938708	X_5938708_SNP [dm3] X_6044675_SNP [dm6]	G	C	3.473e^-4	0.728	INTRON CG5937	TF binding site mE1_TFBS_chinmo
3L	7731396	3L_7731396_SNP [dm3] 3L_7738296_SNP [dm6]	A	C	3.475e^-4	0.728	INTRON CG32373 & 1 other
3L	16354341	3L_16354341_INS [dm3] 3L_16361241_INS [dm6]	T	TT	3.476e^-4	0.728	INTRON CG45057
3L	11885635	3L_11885635_SNP [dm3] 3L_11892535_SNP [dm6]	C	T	3.489e^-4	0.728	INTRON CG44837
2R	16955914	2R_16955914_SNP [dm3] 2R_21068409_SNP [dm6]	G	A	3.490e^-4	0.728	SYNONYMOUS_CODING Cht9 EXON CR44703	TF binding site mE1_TFBS_cad
3R	4948455	3R_4948455_INS [dm3] 3R_9122733_INS [dm6]	T	TGTC	3.494e^-4	0.728	INTRON pum
3R	4525963	3R_4525963_SNP [dm3] 3R_8700241_SNP [dm6]	G	T	3.494e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	370700	2L_370700_SNP [dm3] 2L_370700_SNP [dm6]	T	A	3.495e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	18451788	3R_18451788_SNP [dm3] 3R_22626066_SNP [dm6]	A	T	3.498e^-4	0.728	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	4264097	3R_4264097_SNP [dm3] 3R_8438375_SNP [dm6]	A	C	3.511e^-4	0.73	INTRON CG45263
3L	19647917	3L_19647917_DEL [dm3] 3L_19654817_DEL [dm6]	AGCGAAA	A	3.536e^-4	0.732	INTRON tey
2R	7392063	2R_7392063_SNP [dm3] 2R_11504558_SNP [dm6]	G	A	3.539e^-4	0.732	INTRON inv
3R	25852164	3R_25852164_SNP [dm3] 3R_30026442_SNP [dm6]	C	T	3.541e^-4	0.732	UPSTREAM Axn INTRON Axn	TF binding site mE1_TFBS_chinmo
3R	10283713	3R_10283713_SNP [dm3] 3R_14457991_SNP [dm6]	G	A	3.543e^-4	0.732	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10283731	3R_10283731_SNP [dm3] 3R_14458009_SNP [dm6]	G	A	3.543e^-4	0.732	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12145308	2R_12145308_SNP [dm3] 2R_16257803_SNP [dm6]	G	T	3.552e^-4	0.732	INTRON CngA
3L	12080494	3L_12080494_SNP [dm3] 3L_12087394_SNP [dm6]	A	T	3.555e^-4	0.732	INTERGENIC
X	12365640	X_12365640_SNP [dm3] X_12471607_SNP [dm6]	C	T	3.559e^-4	0.732	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12366208	X_12366208_SNP [dm3] X_12472175_SNP [dm6]	T	A	3.559e^-4	0.732	INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5872897	X_5872897_SNP [dm3] X_5978864_SNP [dm6]	G	A	3.567e^-4	0.732	SYNONYMOUS_CODING Grip
2L	1018152	2L_1018152_SNP [dm3] 2L_1018152_SNP [dm6]	T	C	3.567e^-4	0.732	INTRON IA-2
2L	6958619	2L_6958619_SNP [dm3] 2L_6958619_SNP [dm6]	T	A	3.567e^-4	0.732	DOWNSTREAM Atac1 INTRON CG3430
3R	26873074	3R_26873074_SNP [dm3] 3R_31047352_SNP [dm6]	G	A	3.580e^-4	0.734	DOWNSTREAM CanA1 INTERGENIC
3R	9774865	3R_9774865_SNP [dm3] 3R_13949143_SNP [dm6]	A	G	3.583e^-4	0.734	UTR_3_PRIME CG31517	TF binding site BDTNP1_TFBS_twi
2L	14558042	2L_14558042_SNP [dm3] 2L_14558042_SNP [dm6]	A	G	3.595e^-4	0.735	EXON CR44854	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9615409	2L_9615409_SNP [dm3] 2L_9615409_SNP [dm6]	G	A	3.607e^-4	0.737	SYNONYMOUS_CODING Trx-2
3R	24574195	3R_24574195_SNP [dm3] 3R_28748473_SNP [dm6]	C	T	3.627e^-4	0.737	UTR_3_PRIME CG10000	TF binding site mE1_TFBS_chinmo
2R	6892065	2R_6892065_SNP [dm3] 2R_11004560_SNP [dm6]	C	A	3.630e^-4	0.737	INTRON luna
3R	24771566	3R_24771566_SNP [dm3] 3R_28945844_SNP [dm6]	G	T	3.644e^-4	0.737	INTRON CG14521
3R	14193945	3R_14193945_SNP [dm3] 3R_18368223_SNP [dm6]	T	C	3.646e^-4	0.737	UTR_3_PRIME gl DOWNSTREAM Nup43
2R	7047817	2R_7047817_DEL [dm3] 2R_11160312_DEL [dm6]	TACAT	T	3.648e^-4	0.737	INTRON shn & 1 other
2L	19825351	2L_19825351_SNP [dm3] 2L_19825351_SNP [dm6]	A	G	3.653e^-4	0.737	INTRON sick
3L	748989	3L_748989_SNP [dm3] 3L_748989_SNP [dm6]	A	G	3.654e^-4	0.737	UPSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	11872405	2R_11872405_SNP [dm3] 2R_15984900_SNP [dm6]	A	G	3.657e^-4	0.737	SYNONYMOUS_CODING Strn-Mlck
2L	9767416	2L_9767416_SNP [dm3] 2L_9767416_SNP [dm6]	A	T	3.660e^-4	0.737	SYNONYMOUS_CODING CG4017 INTRON ppk18	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9559522	3L_9559522_DEL [dm3] 3L_9566422_DEL [dm6]	GTTGA	G	3.663e^-4	0.737	INTRON CG42673
X	453070	X_453070_SNP [dm3] X_559037_SNP [dm6]	C	T	3.663e^-4	0.737	INTRON Appl
2R	7046027	2R_7046027_SNP [dm3] 2R_11158522_SNP [dm6]	G	A	3.664e^-4	0.737	UPSTREAM shn INTRON CG13229
3L	1055792	3L_1055792_SNP [dm3] 3L_1055792_SNP [dm6]	A	C	3.668e^-4	0.737	INTRON bab1
3L	22103943	3L_22103943_SNP [dm3] 3L_22110843_SNP [dm6]	T	G	3.673e^-4	0.737	INTERGENIC
2R	4063546	2R_4063546_SNP [dm3] 2R_8176041_SNP [dm6]	C	T	3.676e^-4	0.737	INTRON LRP1	TF binding site mE1_TFBS_eve
3L	16642393	3L_16642393_SNP [dm3] 3L_16649293_SNP [dm6]	T	G	3.678e^-4	0.737	UTR_3_PRIME Baldspot
X	5900615	X_5900615_SNP [dm3] X_6006582_SNP [dm6]	T	A	3.680e^-4	0.737	DOWNSTREAM CR44498 INTERGENIC
2R	7007351	2R_7007351_SNP [dm3] 2R_11119846_SNP [dm6]	A	T	3.680e^-4	0.737	UTR_3_PRIME Cyp12d1-p DOWNSTREAM Cyp12d1-p
2L	804425	2L_804425_SNP [dm3] 2L_804425_SNP [dm6]	A	G	3.683e^-4	0.737	INTERGENIC
2R	6975871	2R_6975871_SNP [dm3] 2R_11088366_SNP [dm6]	C	A	3.687e^-4	0.737	DOWNSTREAM CG43188 INTRON luna
3R	7106691	3R_7106691_SNP [dm3] 3R_11280969_SNP [dm6]	C	T	3.700e^-4	0.737	INTRON CR31386
2L	22076590	2L_22076590_SNP [dm3] 2L_22076590_SNP [dm6]	G	T	3.700e^-4	0.737	INTERGENIC
2R	21373	2R_21373_SNP [dm3] 2R_4133868_SNP [dm6]	T	G	3.703e^-4	0.737	DOWNSTREAM CG17683 INTERGENIC
2R	18156797	2R_18156797_SNP [dm3] 2R_22269292_SNP [dm6]	C	G	3.715e^-4	0.737	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	19573617	3R_19573617_SNP [dm3] 3R_23747895_SNP [dm6]	T	C	3.718e^-4	0.737	SYNONYMOUS_CODING Hmgcr	TF binding site mE1_TFBS_cad
3L	7535979	3L_7535979_SNP [dm3] 3L_7542879_SNP [dm6]	A	G	3.724e^-4	0.737	UPSTREAM CG32376 INTERGENIC
X	7444982	X_7444982_DEL [dm3] X_7550949_DEL [dm6]	AA	A	3.724e^-4	0.737	INTERGENIC
3L	12076473	3L_12076473_SNP [dm3] 3L_12083373_SNP [dm6]	G	A	3.729e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6994376	2R_6994376_SNP [dm3] 2R_11106871_SNP [dm6]	T	A	3.731e^-4	0.737	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22696224	3R_22696224_SNP [dm3] 3R_26870502_SNP [dm6]	C	G	3.734e^-4	0.737	INTRON BM-40-SPARC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	17142416	3L_17142416_SNP [dm3] 3L_17149316_SNP [dm6]	A	T	3.736e^-4	0.737	INTRON Rbp6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10520804	2R_10520804_SNP [dm3] 2R_14633299_SNP [dm6]	C	G	3.737e^-4	0.737	INTERGENIC
3L	12647695	3L_12647695_SNP [dm3] 3L_12654595_SNP [dm6]	T	G	3.737e^-4	0.737	INTERGENIC
2R	7132256	2R_7132256_SNP [dm3] 2R_11244751_SNP [dm6]	C	T	3.745e^-4	0.737	SYNONYMOUS_CODING CG13226 UPSTREAM CG34225	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2113697	3L_2113697_SNP [dm3] 3L_2113697_SNP [dm6]	G	T	3.747e^-4	0.737	INTRON sls
2R	1709399	2R_1709399_SNP [dm3] 2R_5821894_SNP [dm6]	A	C	3.756e^-4	0.738	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	906418	3L_906418_SNP [dm3] 3L_906418_SNP [dm6]	A	G	3.764e^-4	0.739	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5958821	X_5958821_SNP [dm3] X_6064788_SNP [dm6]	G	A	3.766e^-4	0.739	UTR_3_PRIME CG5921 DOWNSTREAM CG5921 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13743805	2R_13743805_SNP [dm3] 2R_17856300_SNP [dm6]	C	A	3.770e^-4	0.739	UTR_5_PRIME olf186-F INTRON olf186-F	TF binding site mE1_TFBS_Trl
3L	7246266	3L_7246266_SNP [dm3] 3L_7253166_SNP [dm6]	G	T	3.776e^-4	0.739	DOWNSTREAM CR43470 INTRON CG14830
3L	12340822	3L_12340822_SNP [dm3] 3L_12347722_SNP [dm6]	G	A	3.782e^-4	0.739	SYNONYMOUS_CODING CrzR
3R	20560757	3R_20560757_SNP [dm3] 3R_24735035_SNP [dm6]	T	C	3.783e^-4	0.739	INTRON tok
3L	9316692	3L_9316692_SNP [dm3] 3L_9323592_SNP [dm6]	T	A	3.791e^-4	0.739	INTERGENIC
2R	6996094	2R_6996094_SNP [dm3] 2R_11108589_SNP [dm6]	T	G	3.794e^-4	0.739	INTRON luna
3L	5709526	3L_5709526_SNP [dm3] 3L_5716426_SNP [dm6]	A	G	3.798e^-4	0.739	INTRON sif	TF binding site mE1_TFBS_chinmo
3R	19954785	3R_19954785_SNP [dm3] 3R_24129063_SNP [dm6]	C	T	3.798e^-4	0.739	SYNONYMOUS_CODING CG5463 DOWNSTREAM Rootletin	TF binding site mE1_TFBS_cad
3R	25951988	3R_25951988_SNP [dm3] 3R_30126266_SNP [dm6]	T	C	3.803e^-4	0.739	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
3R	23486869	3R_23486869_SNP [dm3] 3R_27661147_SNP [dm6]	A	T	3.816e^-4	0.741	UPSTREAM Mlc1 INTERGENIC
3L	749107	3L_749107_SNP [dm3] 3L_749107_SNP [dm6]	A	G	3.821e^-4	0.741	UPSTREAM emc INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	487466	2L_487466_SNP [dm3] 2L_487466_SNP [dm6]	C	G	3.830e^-4	0.741	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16810425	3L_16810425_SNP [dm3] 3L_16817325_SNP [dm6]	T	G	3.839e^-4	0.741	INTRON nudC & 1 other
3R	16653602	3R_16653602_SNP [dm3] 3R_20827880_SNP [dm6]	A	T	3.840e^-4	0.741	DOWNSTREAM CR44047 INTRON AdSS & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5135016	2L_5135016_SNP [dm3] 2L_5135016_SNP [dm6]	C	T	3.842e^-4	0.741	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	24824036	3R_24824036_SNP [dm3] 3R_28998314_SNP [dm6]	C	T	3.842e^-4	0.741	INTRON wat
3L	9598630	3L_9598630_SNP [dm3] 3L_9605530_SNP [dm6]	C	T	3.853e^-4	0.741	INTRON CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22791063	3R_22791063_SNP [dm3] 3R_26965341_SNP [dm6]	G	A	3.856e^-4	0.741	SYNONYMOUS_CODING Gr97a UPSTREAM Tsp97E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12761335	3L_12761335_SNP [dm3] 3L_12768235_SNP [dm6]	C	T	3.859e^-4	0.741	SYNONYMOUS_CODING CG32113 DOWNSTREAM Hip1
2R	18702426	2R_18702426_SNP [dm3] 2R_22814921_SNP [dm6]	A	T	3.867e^-4	0.741	INTRON stl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	15077587	3L_15077587_SNP [dm3] 3L_15084487_SNP [dm6]	C	T	3.877e^-4	0.741	SYNONYMOUS_CODING cp309 UTR_5_PRIME cp309	TF binding site mE1_TFBS_cad
3L	8407439	3L_8407439_SNP [dm3] 3L_8414339_SNP [dm6]	G	T	3.882e^-4	0.741	SPLICE_SITE_REGION Exo70 DOWNSTREAM mtrm INTRON Exo70
3R	22511249	3R_22511249_SNP [dm3] 3R_26685527_SNP [dm6]	A	C	3.890e^-4	0.741	INTERGENIC
3L	15746081	3L_15746081_SNP [dm3] 3L_15752981_SNP [dm6]	T	C	3.893e^-4	0.741	INTERGENIC
3L	12080430	3L_12080430_SNP [dm3] 3L_12087330_SNP [dm6]	T	A	3.896e^-4	0.741	INTERGENIC
2L	18946842	2L_18946842_SNP [dm3] 2L_18946842_SNP [dm6]	G	T	3.898e^-4	0.741	DOWNSTREAM CR44740 EXON CR42848	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12604199	2L_12604199_SNP [dm3] 2L_12604199_SNP [dm6]	C	T	3.901e^-4	0.741	INTRON nub
2L	12604207	2L_12604207_SNP [dm3] 2L_12604207_SNP [dm6]	A	T	3.901e^-4	0.741	INTRON nub
2R	7261966	2R_7261966_SNP [dm3] 2R_11374461_SNP [dm6]	T	C	3.902e^-4	0.741	UPSTREAM CG13203 INTRON CG13203	TF binding site mE1_TFBS_chinmo
2R	45633	2R_45633_SNP [dm3] 2R_4158128_SNP [dm6]	G	A	3.909e^-4	0.741	INTERGENIC
3L	5860181	3L_5860181_SNP [dm3] 3L_5867081_SNP [dm6]	C	A	3.909e^-4	0.741	INTERGENIC
2R	14386449	2R_14386449_SNP [dm3] 2R_18498944_SNP [dm6]	G	T	3.911e^-4	0.741	UPSTREAM CG30116 INTERGENIC
2L	18890022	2L_18890022_SNP [dm3] 2L_18890022_SNP [dm6]	G	A	3.915e^-4	0.741	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	6591359	2R_6591359_SNP [dm3] 2R_10703854_SNP [dm6]	T	A	3.916e^-4	0.741	INTRON stan
2R	16614181	2R_16614181_SNP [dm3] 2R_20726676_SNP [dm6]	G	T	3.916e^-4	0.741	INTRON dpr
3R	6738842	3R_6738842_SNP [dm3] 3R_10913120_SNP [dm6]	G	C	3.939e^-4	0.741	INTERGENIC
3L	8024318	3L_8024318_SNP [dm3] 3L_8031218_SNP [dm6]	T	C	3.940e^-4	0.741	INTRON nmo
2R	6251257	2R_6251257_SNP [dm3] 2R_10363752_SNP [dm6]	T	A	3.942e^-4	0.741	DOWNSTREAM Gr47a INTRON CG42732
3L	5771500	3L_5771500_SNP [dm3] 3L_5778400_SNP [dm6]	C	T	3.945e^-4	0.741	SYNONYMOUS_CODING Myt1	TF binding site mE1_TFBS_sens
3L	9931767	3L_9931767_SNP [dm3] 3L_9938667_SNP [dm6]	T	A	3.947e^-4	0.741	INTRON CG34356
2R	15834350	2R_15834350_SNP [dm3] 2R_19946845_SNP [dm6]	G	A	3.951e^-4	0.741	UPSTREAM CG30447 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10705286	2R_10705286_SNP [dm3] 2R_14817781_SNP [dm6]	C	A	3.959e^-4	0.741	DOWNSTREAM CG10202 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4632339	3R_4632339_SNP [dm3] 3R_8806617_SNP [dm6]	T	A	3.961e^-4	0.741	UPSTREAM CG9839 DOWNSTREAM Tcp-1eta INTRON hng2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	23561952	3R_23561952_SNP [dm3] 3R_27736230_SNP [dm6]	C	T	3.967e^-4	0.741	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

LC50 phenotype phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results