DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.298e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1044 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16919763	3L_16919763_SNP [dm3] 3L_16926663_SNP [dm6]	A	C	1.465e^-6	0.985	INTRON CG13023
3L	7273385	3L_7273385_SNP [dm3] 3L_7280285_SNP [dm6]	G	A	3.562e^-6	0.985	INTRON unc-13-4A
3L	7273382	3L_7273382_SNP [dm3] 3L_7280282_SNP [dm6]	C	G	4.230e^-6	0.985	INTRON unc-13-4A
3L	5344988	3L_5344988_DEL [dm3] 3L_5351888_DEL [dm6]	TT	T	9.099e^-6	0.985	UPSTREAM lama INTRON lama	TF binding site mE1_TFBS_HSA
2R	19395924	2R_19395924_SNP [dm3] 2R_23508401_SNP [dm6]	T	A	1.159e^-5	0.985	UPSTREAM CR43794 INTERGENIC
3L	3271348	3L_3271348_SNP [dm3] 3L_3271348_SNP [dm6]	G	T	1.238e^-5	0.985	INTRON CG14960
3L	3271376	3L_3271376_SNP [dm3] 3L_3271376_SNP [dm6]	T	A	1.238e^-5	0.985	INTRON CG14960
3R	8731593	3R_8731593_SNP [dm3] 3R_12905871_SNP [dm6]	C	T	1.240e^-5	0.985	INTERGENIC
X	6644398	X_6644398_SNP [dm3] X_6750365_SNP [dm6]	C	A	1.611e^-5	0.985	INTRON CG14439
2L	18445227	2L_18445227_SNP [dm3] 2L_18445227_SNP [dm6]	A	G	1.725e^-5	0.985	SYNONYMOUS_CODING ncm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2R	20481989	2R_20481989_SNP [dm3] 2R_24594466_SNP [dm6]	G	A	1.770e^-5	0.985	INTRON pio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2821996	3L_2821996_SNP [dm3] 3L_2821996_SNP [dm6]	A	T	1.788e^-5	0.985	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14681231	3L_14681231_SNP [dm3] 3L_14688131_SNP [dm6]	T	G	1.796e^-5	0.985	INTRON ome
3L	3271339	3L_3271339_SNP [dm3] 3L_3271339_SNP [dm6]	C	T	1.864e^-5	0.985	INTRON CG14960
3L	14681145	3L_14681145_SNP [dm3] 3L_14688045_SNP [dm6]	A	C	2.129e^-5	0.985	INTRON ome
2R	16425831	2R_16425831_SNP [dm3] 2R_20538326_SNP [dm6]	C	T	2.134e^-5	0.985	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7324798	2L_7324798_SNP [dm3] 2L_7324798_SNP [dm6]	C	A	2.148e^-5	0.985	INTERGENIC
2L	19191950	2L_19191950_SNP [dm3] 2L_19191950_SNP [dm6]	A	T	2.165e^-5	0.985	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7116137	2L_7116137_SNP [dm3] 2L_7116137_SNP [dm6]	A	C	2.209e^-5	0.985	INTRON Pvf3
X	6728091	X_6728091_SNP [dm3] X_6834058_SNP [dm6]	T	C	2.329e^-5	0.985	NON_SYNONYMOUS_CODING nonC
2L	9059422	2L_9059422_SNP [dm3] 2L_9059422_SNP [dm6]	T	C	2.451e^-5	0.985	INTRON CG31708
3L	16919096	3L_16919096_INS [dm3] 3L_16925996_INS [dm6]	TC	GGTTAAA	2.676e^-5	0.985	INTRON CG13023
2L	7116086	2L_7116086_SNP [dm3] 2L_7116086_SNP [dm6]	T	C	2.768e^-5	0.985	INTRON Pvf3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8560543	3R_8560543_SNP [dm3] 3R_12734821_SNP [dm6]	G	C	3.004e^-5	0.985	INTERGENIC
2R	20088398	2R_20088398_SNP [dm3] 2R_24200875_SNP [dm6]	C	A	3.120e^-5	0.985	SYNONYMOUS_CODING CG3356	TF binding site mE1_TFBS_cad
2R	2826967	2R_2826967_SNP [dm3] 2R_6939462_SNP [dm6]	T	C	3.449e^-5	0.985	INTRON mim
2R	8534526	2R_8534526_SNP [dm3] 2R_12647021_SNP [dm6]	G	T	3.476e^-5	0.985	INTRON CG8785
2R	2826981	2R_2826981_SNP [dm3] 2R_6939476_SNP [dm6]	A	G	3.482e^-5	0.985	INTRON mim
2L	6552652	2L_6552652_SNP [dm3] 2L_6552652_SNP [dm6]	G	T	3.622e^-5	0.985	DOWNSTREAM CR44776 INTERGENIC
2L	17510898	2L_17510898_SNP [dm3] 2L_17510898_SNP [dm6]	C	T	3.657e^-5	0.985	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_HSA
3L	11101020	3L_11101020_SNP [dm3] 3L_11107920_SNP [dm6]	T	C	3.796e^-5	0.985	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
3L	16919090	3L_16919090_SNP [dm3] 3L_16925990_SNP [dm6]	A	C	3.950e^-5	0.985	SPLICE_SITE_REGION CG13023 INTRON CG13023
X	11256940	X_11256940_SNP [dm3] X_11362907_SNP [dm6]	A	C	4.036e^-5	0.985	INTRON hop	TF binding site mE1_TFBS_cad
2L	2724995	2L_2724995_SNP [dm3] 2L_2724995_SNP [dm6]	G	A	4.100e^-5	0.985	UPSTREAM CG31689 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1
3L	2034675	3L_2034675_SNP [dm3] 3L_2034675_SNP [dm6]	G	A	4.253e^-5	0.985	INTERGENIC
2R	11789955	2R_11789955_SNP [dm3] 2R_15902450_SNP [dm6]	G	A	4.277e^-5	0.985	INTRON sli	TF binding site BDTNP1_TFBS_twi
2R	18002885	2R_18002885_SNP [dm3] 2R_22115380_SNP [dm6]	T	C	4.280e^-5	0.985	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
2R	20088435	2R_20088435_SNP [dm3] 2R_24200912_SNP [dm6]	A	T	4.327e^-5	0.985	INTRON CG3356
X	8800818	X_8800818_SNP [dm3] X_8906785_SNP [dm6]	C	G	4.341e^-5	0.985	UPSTREAM e_r_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	14086341	2R_14086341_SNP [dm3] 2R_18198836_SNP [dm6]	A	G	4.361e^-5	0.985	INTERGENIC
3L	12888401	3L_12888401_SNP [dm3] 3L_12895301_SNP [dm6]	G	A	4.367e^-5	0.985	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8560605	3R_8560605_INS [dm3] 3R_12734883_INS [dm6]	A	AGCGTAA	4.393e^-5	0.985	INTERGENIC
3L	10942248	3L_10942248_SNP [dm3] 3L_10949148_SNP [dm6]	A	G	4.434e^-5	0.985	INTERGENIC
2L	19194177	2L_19194177_SNP [dm3] 2L_19194177_SNP [dm6]	C	T	4.933e^-5	0.985	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	21283719	3R_21283719_SNP [dm3] 3R_25457997_SNP [dm6]	A	G	5.015e^-5	0.985	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
X	10870681	X_10870681_SNP [dm3] X_10976648_SNP [dm6]	G	A	5.022e^-5	0.985	INTRON CG42339
X	8738226	X_8738226_SNP [dm3] X_8844193_SNP [dm6]	T	C	5.047e^-5	0.985	INTRON CG12075
2L	6348633	2L_6348633_SNP [dm3] 2L_6348633_SNP [dm6]	A	G	5.216e^-5	0.985	UPSTREAM CG9497 DOWNSTREAM CG9498 INTERGENIC
3R	5654710	3R_5654710_SNP [dm3] 3R_9828988_SNP [dm6]	T	C	5.275e^-5	0.985	INTRON Teh1
3L	9339327	3L_9339327_SNP [dm3] 3L_9346227_SNP [dm6]	A	T	5.400e^-5	0.985	UTR_3_PRIME PGRP-LC INTRON PGRP-LC
2R	13221737	2R_13221737_SNP [dm3] 2R_17334232_SNP [dm6]	G	C	5.404e^-5	0.985	INTRON mbl
2L	7231249	2L_7231249_INS [dm3] 2L_7231249_INS [dm6]	T	TT	5.410e^-5	0.985	DOWNSTREAM CG43800 INTRON Ndae1
2L	3621954	2L_3621954_SNP [dm3] 2L_3621954_SNP [dm6]	G	A	5.753e^-5	0.985	UPSTREAM CG15418 DOWNSTREAM for & 1 other INTERGENIC
2L	14749392	2L_14749392_SNP [dm3] 2L_14749392_SNP [dm6]	A	G	5.965e^-5	0.985	INTERGENIC
2R	13957962	2R_13957962_SNP [dm3] 2R_18070457_SNP [dm6]	T	C	6.105e^-5	0.985	INTRON CG34386
2R	20088447	2R_20088447_SNP [dm3] 2R_24200924_SNP [dm6]	A	C	6.183e^-5	0.985	INTRON CG3356
2R	20088453	2R_20088453_SNP [dm3] 2R_24200930_SNP [dm6]	G	A	6.183e^-5	0.985	INTRON CG3356
2L	18603579	2L_18603579_SNP [dm3] 2L_18603579_SNP [dm6]	C	T	6.257e^-5	0.985	INTRON CG10413
3L	16919138	3L_16919138_MNP [dm3] 3L_16926038_MNP [dm6]	CGT	ATA	6.360e^-5	0.985	INTRON CG13023
3L	12888569	3L_12888569_SNP [dm3] 3L_12895469_SNP [dm6]	C	T	6.415e^-5	0.985	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7486518	3L_7486518_SNP [dm3] 3L_7493418_SNP [dm6]	G	A	6.570e^-5	0.985	SYNONYMOUS_CODING Cyp316a1 DOWNSTREAM Cyp4d8
3L	1389932	3L_1389932_SNP [dm3] 3L_1389932_SNP [dm6]	T	A	6.644e^-5	0.985	INTRON Ptp61F
3L	1389959	3L_1389959_SNP [dm3] 3L_1389959_SNP [dm6]	A	G	6.644e^-5	0.985	INTRON Ptp61F
2L	18603603	2L_18603603_SNP [dm3] 2L_18603603_SNP [dm6]	T	C	6.785e^-5	0.985	INTRON CG10413
2L	19194171	2L_19194171_SNP [dm3] 2L_19194171_SNP [dm6]	A	T	6.854e^-5	0.985	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17443324	2R_17443324_SNP [dm3] 2R_21555819_SNP [dm6]	G	A	7.008e^-5	0.985	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2143455	3L_2143455_SNP [dm3] 3L_2143455_SNP [dm6]	C	A	7.187e^-5	0.985	INTRON zormin
3L	4675363	3L_4675363_SNP [dm3] 3L_4675363_SNP [dm6]	G	A	7.311e^-5	0.985	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4675371	3L_4675371_SNP [dm3] 3L_4675371_SNP [dm6]	A	G	7.311e^-5	0.985	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5904828	3L_5904828_SNP [dm3] 3L_5911728_SNP [dm6]	A	C	7.376e^-5	0.985	INTRON CG13288
2R	9682804	2R_9682804_SNP [dm3] 2R_13795299_SNP [dm6]	A	T	7.380e^-5	0.985	INTRON Cpr50Cb
2R	15778273	2R_15778273_SNP [dm3] 2R_19890768_SNP [dm6]	C	T	7.410e^-5	0.985	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9028899	3L_9028899_SNP [dm3] 3L_9035799_SNP [dm6]	T	C	7.491e^-5	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3625721	3R_3625721_SNP [dm3] 3R_7799999_SNP [dm6]	T	C	7.588e^-5	0.985	INTRON CG3014
2L	13976928	2L_13976928_SNP [dm3] 2L_13976928_SNP [dm6]	C	A	7.710e^-5	0.985	UPSTREAM NimC1 & 1 other INTERGENIC
3L	3252349	3L_3252349_SNP [dm3] 3L_3252349_SNP [dm6]	C	A	7.861e^-5	0.985	EXON CR43626
2R	4093880	2R_4093880_SNP [dm3] 2R_8206375_SNP [dm6]	A	G	8.246e^-5	0.985	UPSTREAM CG14756 INTRON LRP1
X	13487391	X_13487391_SNP [dm3] X_13593358_SNP [dm6]	G	C	8.272e^-5	0.985	DOWNSTREAM up & 1 other INTERGENIC
X	13487395	X_13487395_SNP [dm3] X_13593362_SNP [dm6]	G	T	8.272e^-5	0.985	DOWNSTREAM up & 1 other INTERGENIC
3R	7709869	3R_7709869_SNP [dm3] 3R_11884147_SNP [dm6]	C	A	8.539e^-5	0.985	SYNONYMOUS_CODING mthl5 INTRON CG31368
3R	7710536	3R_7710536_SNP [dm3] 3R_11884814_SNP [dm6]	G	T	8.539e^-5	0.985	SYNONYMOUS_CODING mthl5 INTRON CG31368
X	12610055	X_12610055_SNP [dm3] X_12716022_SNP [dm6]	C	T	8.643e^-5	0.985	INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12422729	3L_12422729_SNP [dm3] 3L_12429629_SNP [dm6]	C	T	8.885e^-5	0.985	INTRON toe
3R	16623416	3R_16623416_SNP [dm3] 3R_20797694_SNP [dm6]	G	A	8.935e^-5	0.985	INTRON Syp
2R	13595388	2R_13595388_SNP [dm3] 2R_17707883_SNP [dm6]	G	C	9.081e^-5	0.985	NON_SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12553391	3R_12553391_SNP [dm3] 3R_16727669_SNP [dm6]	T	C	9.085e^-5	0.985	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20088480	2R_20088480_SNP [dm3] 2R_24200957_SNP [dm6]	C	T	9.263e^-5	0.985	SYNONYMOUS_CODING CG3356
2R	11964052	2R_11964052_SNP [dm3] 2R_16076547_SNP [dm6]	C	A	9.384e^-5	0.985	INTERGENIC
2R	7033857	2R_7033857_SNP [dm3] 2R_11146352_SNP [dm6]	T	G	9.448e^-5	0.985	UTR_5_PRIME CG13231 INTRON CG13229
2R	10332101	2R_10332101_SNP [dm3] 2R_14444596_SNP [dm6]	G	C	9.522e^-5	0.985	INTRON Oaz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	11070592	X_11070592_SNP [dm3] X_11176559_SNP [dm6]	A	T	9.538e^-5	0.985	INTERGENIC
3L	15250277	3L_15250277_SNP [dm3] 3L_15257177_SNP [dm6]	G	A	9.659e^-5	0.985	INTERGENIC
3L	3728582	3L_3728582_SNP [dm3] 3L_3728582_SNP [dm6]	C	T	9.929e^-5	0.985	INTRON CG32264
X	5864633	X_5864633_SNP [dm3] X_5970600_SNP [dm6]	A	G	9.948e^-5	0.985	INTRON Grip	TF binding site BDTNP1_TFBS_da
X	14087822	X_14087822_SNP [dm3] X_14193789_SNP [dm6]	G	A	1.004e^-4	0.985	INTRON yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
3L	15250295	3L_15250295_SNP [dm3] 3L_15257195_SNP [dm6]	A	G	1.009e^-4	0.985	INTERGENIC
3R	8560615	3R_8560615_SNP [dm3] 3R_12734893_SNP [dm6]	T	A	1.013e^-4	0.985	INTERGENIC
3L	4054794	3L_4054794_SNP [dm3] 3L_4054794_SNP [dm6]	T	A	1.019e^-4	0.985	INTRON CG1136
2R	14152597	2R_14152597_SNP [dm3] 2R_18265092_SNP [dm6]	T	A	1.036e^-4	0.985	INTERGENIC
3L	16058827	3L_16058827_SNP [dm3] 3L_16065727_SNP [dm6]	T	C	1.038e^-4	0.985	INTRON Mbs
X	14628650	X_14628650_SNP [dm3] X_14734617_SNP [dm6]	C	T	1.040e^-4	0.985	INTRON NetB
2R	11790116	2R_11790116_INS [dm3] 2R_15902611_INS [dm6]	A	ACA	1.045e^-4	0.985	INTRON sli	TF binding site BDTNP1_TFBS_twi
X	5864635	X_5864635_SNP [dm3] X_5970602_SNP [dm6]	T	A	1.052e^-4	0.985	INTRON Grip	TF binding site BDTNP1_TFBS_da
2R	10100214	2R_10100214_SNP [dm3] 2R_14212709_SNP [dm6]	A	C	1.058e^-4	0.985	UPSTREAM Sox15 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21283717	3R_21283717_SNP [dm3] 3R_25457995_SNP [dm6]	T	A	1.071e^-4	0.985	INTRON Fur1	TF binding site BDTNP1_TFBS_twi
X	12305007	X_12305007_SNP [dm3] X_12410974_SNP [dm6]	T	C	1.087e^-4	0.985	DOWNSTREAM CG32652 INTERGENIC
3R	16623415	3R_16623415_SNP [dm3] 3R_20797693_SNP [dm6]	A	T	1.088e^-4	0.985	INTRON Syp
2R	11988578	2R_11988578_SNP [dm3] 2R_16101073_SNP [dm6]	A	G	1.093e^-4	0.985	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2L	3621960	2L_3621960_SNP [dm3] 2L_3621960_SNP [dm6]	G	C	1.100e^-4	0.985	UPSTREAM CG15418 DOWNSTREAM for & 1 other INTERGENIC
2R	13565314	2R_13565314_SNP [dm3] 2R_17677809_SNP [dm6]	T	A	1.110e^-4	0.985	INTRON Sema-1b
2L	20342459	2L_20342459_SNP [dm3] 2L_20342459_SNP [dm6]	A	T	1.116e^-4	0.985	SYNONYMOUS_CODING spir INTRON spir	TF binding site mE1_TFBS_cad
2L	8764481	2L_8764481_SNP [dm3] 2L_8764481_SNP [dm6]	T	G	1.116e^-4	0.985	DOWNSTREAM CG9463 INTERGENIC
3L	17778185	3L_17778185_SNP [dm3] 3L_17785085_SNP [dm6]	A	C	1.120e^-4	0.985	EXON CR44668
X	14630269	X_14630269_SNP [dm3] X_14736236_SNP [dm6]	G	T	1.156e^-4	0.985	INTRON NetB
X	14630297	X_14630297_SNP [dm3] X_14736264_SNP [dm6]	A	T	1.156e^-4	0.985	INTRON NetB
3L	5182218	3L_5182218_SNP [dm3] 3L_5189118_SNP [dm6]	A	T	1.173e^-4	0.985	INTRON shep
2L	19194200	2L_19194200_SNP [dm3] 2L_19194200_SNP [dm6]	C	T	1.174e^-4	0.985	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11256958	X_11256958_SNP [dm3] X_11362925_SNP [dm6]	T	C	1.179e^-4	0.985	INTRON hop	TF binding site mE1_TFBS_cad
2L	22055170	2L_22055170_SNP [dm3] 2L_22055170_SNP [dm6]	T	C	1.185e^-4	0.985	UPSTREAM CG34173 INTERGENIC
2L	7116029	2L_7116029_SNP [dm3] 2L_7116029_SNP [dm6]	T	A	1.192e^-4	0.985	INTRON Pvf3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6616375	2L_6616375_SNP [dm3] 2L_6616375_SNP [dm6]	T	C	1.199e^-4	0.985	SYNONYMOUS_CODING CG11050 DOWNSTREAM CG11320
X	6966351	X_6966351_SNP [dm3] X_7072318_SNP [dm6]	C	G	1.206e^-4	0.985	UTR_3_PRIME CG4607
2R	10933075	2R_10933075_SNP [dm3] 2R_15045570_SNP [dm6]	A	T	1.207e^-4	0.985	INTERGENIC
3L	10420598	3L_10420598_SNP [dm3] 3L_10427498_SNP [dm6]	G	C	1.207e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4054788	3L_4054788_SNP [dm3] 3L_4054788_SNP [dm6]	T	A	1.207e^-4	0.985	INTRON CG1136
2L	9171287	2L_9171287_SNP [dm3] 2L_9171287_SNP [dm6]	G	C	1.222e^-4	0.985	INTRON tai
3L	16044419	3L_16044419_SNP [dm3] 3L_16051319_SNP [dm6]	C	A	1.263e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9712051	2L_9712051_SNP [dm3] 2L_9712051_SNP [dm6]	G	A	1.282e^-4	0.985	UTR_3_PRIME Nckx30C UPSTREAM CG4364 DOWNSTREAM Nckx30C	TF binding site mE1_TFBS_HSA
2R	14152679	2R_14152679_SNP [dm3] 2R_18265174_SNP [dm6]	C	T	1.312e^-4	0.985	INTERGENIC
2R	17719209	2R_17719209_SNP [dm3] 2R_21831704_SNP [dm6]	T	C	1.316e^-4	0.985	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
3L	16918701	3L_16918701_SNP [dm3] 3L_16925601_SNP [dm6]	G	A	1.325e^-4	0.985	SYNONYMOUS_CODING CG13023	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	622452	3L_622452_SNP [dm3] 3L_622452_SNP [dm6]	T	G	1.344e^-4	0.985	UPSTREAM CG43337 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	23781945	3R_23781945_SNP [dm3] 3R_27956223_SNP [dm6]	T	A	1.365e^-4	0.985	INTRON CG5527	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8474523	3L_8474523_SNP [dm3] 3L_8481423_SNP [dm6]	C	A	1.387e^-4	0.985	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20096993	2R_20096993_SNP [dm3] 2R_24209470_SNP [dm6]	T	C	1.396e^-4	0.985	INTERGENIC
2L	12523664	2L_12523664_DEL [dm3] 2L_12523664_DEL [dm6]	ATTGA	A	1.397e^-4	0.985	INTRON bun
2R	13353812	2R_13353812_SNP [dm3] 2R_17466307_SNP [dm6]	G	T	1.494e^-4	0.985	UTR_3_PRIME Tes DOWNSTREAM CG14478	TF binding site BDTNP1_TFBS_dl
3L	675980	3L_675980_DEL [dm3] 3L_675980_DEL [dm6]	AAGCAA	A	1.494e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13919794	3L_13919794_SNP [dm3] 3L_13926694_SNP [dm6]	G	A	1.495e^-4	0.985	SYNONYMOUS_CODING CG8833	TF binding site mE1_TFBS_sens
2L	5855108	2L_5855108_SNP [dm3] 2L_5855108_SNP [dm6]	A	T	1.511e^-4	0.985	INTRON TrissinR	TF binding site mE1_TFBS_HSA
X	4454414	X_4454414_SNP [dm3] X_4560381_SNP [dm6]	G	C	1.524e^-4	0.985	DOWNSTREAM CG3546 INTRON CR32773	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	8814883	2R_8814883_SNP [dm3] 2R_12927378_SNP [dm6]	A	T	1.543e^-4	0.985	INTRON sug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11789996	2R_11789996_DEL [dm3] 2R_15902491_DEL [dm6]	AAGA	A	1.548e^-4	0.985	INTRON sli	TF binding site BDTNP1_TFBS_twi
2R	20120138	2R_20120138_SNP [dm3] 2R_24232615_SNP [dm6]	T	C	1.553e^-4	0.985	INTERGENIC
2L	3621909	2L_3621909_SNP [dm3] 2L_3621909_SNP [dm6]	G	C	1.564e^-4	0.985	UPSTREAM CG15418 DOWNSTREAM for & 1 other INTERGENIC
2L	13171986	2L_13171986_SNP [dm3] 2L_13171986_SNP [dm6]	A	C	1.664e^-4	0.985	SYNONYMOUS_CODING Sfmbt
3R	22735194	3R_22735194_SNP [dm3] 3R_26909472_SNP [dm6]	C	T	1.664e^-4	0.985	INTRON T48	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	13920879	2L_13920879_SNP [dm3] 2L_13920879_SNP [dm6]	T	C	1.676e^-4	0.985	UTR_3_PRIME CG16886 INTRON Ance-3	TF binding site mE1_TFBS_cad
X	12926028	X_12926028_DEL [dm3] X_13031995_DEL [dm6]	AA	A	1.696e^-4	0.985	INTRON rad
3L	7486521	3L_7486521_SNP [dm3] 3L_7493421_SNP [dm6]	C	T	1.701e^-4	0.985	SYNONYMOUS_CODING Cyp316a1 DOWNSTREAM Cyp4d8
2R	8807189	2R_8807189_SNP [dm3] 2R_12919684_SNP [dm6]	C	A	1.726e^-4	0.985	SYNONYMOUS_CODING NAT1 UTR_5_PRIME NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19447404	2R_19447404_SNP [dm3] 2R_23559881_SNP [dm6]	A	G	1.729e^-4	0.985	SYNONYMOUS_CODING ItgalphaPS5 UPSTREAM Pi3K59F
2R	8779479	2R_8779479_SNP [dm3] 2R_12891974_SNP [dm6]	C	A	1.752e^-4	0.985	INTRON vg	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	7823689	3R_7823689_SNP [dm3] 3R_11997967_SNP [dm6]	A	G	1.755e^-4	0.985	INTRON Tk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5654572	2L_5654572_SNP [dm3] 2L_5654572_SNP [dm6]	T	C	1.757e^-4	0.985	INTRON CG31646
2L	7186753	2L_7186753_SNP [dm3] 2L_7186753_SNP [dm6]	G	A	1.773e^-4	0.985	SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA
X	2914411	X_2914411_SNP [dm3] X_3020378_SNP [dm6]	G	A	1.782e^-4	0.985	INTRON kirre
2R	13583465	2R_13583465_SNP [dm3] 2R_17695960_SNP [dm6]	G	A	1.808e^-4	0.985	UTR_3_PRIME rdgBbeta UPSTREAM swi2
2R	13583490	2R_13583490_SNP [dm3] 2R_17695985_SNP [dm6]	G	A	1.808e^-4	0.985	UTR_3_PRIME rdgBbeta UPSTREAM swi2
2L	19194170	2L_19194170_SNP [dm3] 2L_19194170_SNP [dm6]	A	C	1.827e^-4	0.985	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16183728	2L_16183728_SNP [dm3] 2L_16183728_SNP [dm6]	G	T	1.834e^-4	0.985	INTRON Ca-alpha1D
2R	10184148	2R_10184148_SNP [dm3] 2R_14296643_SNP [dm6]	G	C	1.838e^-4	0.985	INTRON Ih
3L	5182232	3L_5182232_SNP [dm3] 3L_5189132_SNP [dm6]	C	T	1.888e^-4	0.985	INTRON shep
2R	5815283	2R_5815283_SNP [dm3] 2R_9927778_SNP [dm6]	G	A	1.894e^-4	0.985	INTRON Mef2
3R	12553308	3R_12553308_SNP [dm3] 3R_16727586_SNP [dm6]	C	T	1.896e^-4	0.985	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2035768	3L_2035768_SNP [dm3] 3L_2035768_SNP [dm6]	T	C	1.901e^-4	0.985	INTERGENIC
2R	13221794	2R_13221794_INS [dm3] 2R_17334289_INS [dm6]	A	AA	1.922e^-4	0.985	INTRON mbl
2L	13976987	2L_13976987_SNP [dm3] 2L_13976987_SNP [dm6]	G	A	1.924e^-4	0.985	UPSTREAM NimC1 & 1 other INTERGENIC
2R	19446759	2R_19446759_SNP [dm3] 2R_23559236_SNP [dm6]	C	A	1.928e^-4	0.985	INTRON ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3599182	3L_3599182_DEL [dm3] 3L_3599182_DEL [dm6]	CACTAAGATCCCTC...	C	1.943e^-4	0.985	INTRON Eip63E
2L	6552656	2L_6552656_SNP [dm3] 2L_6552656_SNP [dm6]	T	C	1.952e^-4	0.985	DOWNSTREAM CR44776 INTERGENIC
2R	10441038	2R_10441038_SNP [dm3] 2R_14553533_SNP [dm6]	G	A	1.983e^-4	0.985	DOWNSTREAM CG43919 INTRON ttv
2L	7116098	2L_7116098_SNP [dm3] 2L_7116098_SNP [dm6]	T	C	1.984e^-4	0.985	INTRON Pvf3	TF binding site mE1_TFBS_sbb
3L	17554541	3L_17554541_SNP [dm3] 3L_17561441_SNP [dm6]	T	A	1.993e^-4	0.985	UTR_3_PRIME Eip74EF
2R	9459351	2R_9459351_SNP [dm3] 2R_13571846_SNP [dm6]	C	T	1.993e^-4	0.985	SYNONYMOUS_CODING CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16763316	3R_16763316_SNP [dm3] 3R_20937594_SNP [dm6]	G	C	2.001e^-4	0.985	INTRON CG31191
3L	9028842	3L_9028842_SNP [dm3] 3L_9035742_SNP [dm6]	A	G	2.013e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9028854	3L_9028854_SNP [dm3] 3L_9035754_SNP [dm6]	A	T	2.013e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9031187	3L_9031187_SNP [dm3] 3L_9038087_SNP [dm6]	A	G	2.013e^-4	0.985	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	6728097	X_6728097_SNP [dm3] X_6834064_SNP [dm6]	T	G	2.045e^-4	0.985	NON_SYNONYMOUS_CODING nonC
3R	1917093	3R_1917093_SNP [dm3] 3R_6091371_SNP [dm6]	A	G	2.063e^-4	0.985	INTRON Gasp
2R	14152699	2R_14152699_SNP [dm3] 2R_18265194_SNP [dm6]	T	C	2.073e^-4	0.985	INTERGENIC
2L	1723599	2L_1723599_SNP [dm3] 2L_1723599_SNP [dm6]	C	T	2.088e^-4	0.985	INTRON Rim2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7115975	2L_7115975_SNP [dm3] 2L_7115975_SNP [dm6]	A	T	2.103e^-4	0.985	INTRON Pvf3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5855060	2L_5855060_SNP [dm3] 2L_5855060_SNP [dm6]	G	A	2.106e^-4	0.985	INTRON TrissinR	TF binding site mE1_TFBS_HSA
2L	8766096	2L_8766096_SNP [dm3] 2L_8766096_SNP [dm6]	A	G	2.112e^-4	0.985	SYNONYMOUS_CODING CG9463	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20342456	2L_20342456_SNP [dm3] 2L_20342456_SNP [dm6]	A	G	2.151e^-4	0.985	SYNONYMOUS_CODING spir INTRON spir	TF binding site mE1_TFBS_cad
3L	2035770	3L_2035770_SNP [dm3] 3L_2035770_SNP [dm6]	C	G	2.157e^-4	0.985	INTERGENIC
3L	5282497	3L_5282497_SNP [dm3] 3L_5289397_SNP [dm6]	C	T	2.158e^-4	0.985	INTERGENIC
2L	10535946	2L_10535946_SNP [dm3] 2L_10535946_SNP [dm6]	T	C	2.158e^-4	0.985	SYNONYMOUS_CODING CG18302
2L	18603624	2L_18603624_SNP [dm3] 2L_18603624_SNP [dm6]	C	A	2.175e^-4	0.985	INTRON CG10413
3L	12620197	3L_12620197_SNP [dm3] 3L_12627097_SNP [dm6]	T	A	2.198e^-4	0.985	UPSTREAM CR32111 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6313170	2L_6313170_SNP [dm3] 2L_6313170_SNP [dm6]	T	A	2.223e^-4	0.985	INTRON Ddr
3R	16759397	3R_16759397_DEL [dm3] 3R_20933675_DEL [dm6]	TTTAATCAAATT...	T	2.244e^-4	0.985	INTRON CG31191
3L	14681812	3L_14681812_SNP [dm3] 3L_14688712_SNP [dm6]	C	T	2.246e^-4	0.985	INTRON ome
3L	12563690	3L_12563690_SNP [dm3] 3L_12570590_SNP [dm6]	T	G	2.255e^-4	0.985	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12563695	3L_12563695_SNP [dm3] 3L_12570595_SNP [dm6]	C	T	2.255e^-4	0.985	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17554309	3L_17554309_SNP [dm3] 3L_17561209_SNP [dm6]	G	A	2.269e^-4	0.985	UTR_3_PRIME Eip74EF
2R	7371016	2R_7371016_SNP [dm3] 2R_11483511_SNP [dm6]	G	T	2.282e^-4	0.985	INTRON inv
2L	14077454	2L_14077454_SNP [dm3] 2L_14077454_SNP [dm6]	C	T	2.283e^-4	0.985	INTRON nAChRalpha5
2R	8434415	2R_8434415_SNP [dm3] 2R_12546910_SNP [dm6]	A	T	2.298e^-4	0.985	DOWNSTREAM CG33752 INTRON fra	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19596612	2R_19596612_SNP [dm3] 2R_23709089_SNP [dm6]	C	A	2.321e^-4	0.985	UPSTREAM CR45326 DOWNSTREAM l_2_tid INTRON l_2_not	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11812095	X_11812095_SNP [dm3] X_11918062_SNP [dm6]	A	T	2.327e^-4	0.985	UPSTREAM pot EXON CR32661	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3L	7095773	3L_7095773_SNP [dm3] 3L_7102673_SNP [dm6]	T	A	2.332e^-4	0.985	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18603505	2L_18603505_SNP [dm3] 2L_18603505_SNP [dm6]	A	G	2.357e^-4	0.985	INTRON CG10413
3R	8823921	3R_8823921_SNP [dm3] 3R_12998199_SNP [dm6]	C	A	2.359e^-4	0.985	UTR_5_PRIME CG7518 UPSTREAM CG17327 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	6991128	2R_6991128_SNP [dm3] 2R_11103623_SNP [dm6]	A	G	2.383e^-4	0.985	INTRON luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	10787968	3L_10787968_SNP [dm3] 3L_10794868_SNP [dm6]	A	G	2.400e^-4	0.985	UPSTREAM CR44546 INTERGENIC
X	12595940	X_12595940_SNP [dm3] X_12701907_SNP [dm6]	G	T	2.407e^-4	0.985	INTRON Smr	TF binding site BDTNP1_TFBS_dl
3L	14216612	3L_14216612_SNP [dm3] 3L_14223512_SNP [dm6]	T	C	2.412e^-4	0.985	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3260648	3L_3260648_SNP [dm3] 3L_3260648_SNP [dm6]	T	A	2.433e^-4	0.985	INTRON ckd
2R	13518617	2R_13518617_SNP [dm3] 2R_17631112_SNP [dm6]	A	G	2.458e^-4	0.985	INTRON CG10936 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11811913	X_11811913_SNP [dm3] X_11917880_SNP [dm6]	C	T	2.461e^-4	0.985	UPSTREAM pot EXON CR32661	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8420952	2R_8420952_SNP [dm3] 2R_12533447_SNP [dm6]	T	C	2.471e^-4	0.985	INTRON fra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3252345	3L_3252345_SNP [dm3] 3L_3252345_SNP [dm6]	A	T	2.480e^-4	0.985	EXON CR43626
2L	7186750	2L_7186750_SNP [dm3] 2L_7186750_SNP [dm6]	A	T	2.483e^-4	0.985	SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA
2R	18180691	2R_18180691_SNP [dm3] 2R_22293186_SNP [dm6]	G	A	2.487e^-4	0.985	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2L	7259906	2L_7259906_SNP [dm3] 2L_7259906_SNP [dm6]	G	A	2.493e^-4	0.985	INTRON Wnt4
3L	10942203	3L_10942203_SNP [dm3] 3L_10949103_SNP [dm6]	C	T	2.518e^-4	0.985	INTERGENIC
2L	12876482	2L_12876482_SNP [dm3] 2L_12876482_SNP [dm6]	A	T	2.526e^-4	0.985	INTERGENIC
X	6926688	X_6926688_SNP [dm3] X_7032655_SNP [dm6]	T	C	2.532e^-4	0.985	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6926693	X_6926693_SNP [dm3] X_7032660_SNP [dm6]	G	A	2.532e^-4	0.985	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17554526	3L_17554526_SNP [dm3] 3L_17561426_SNP [dm6]	A	G	2.534e^-4	0.985	UTR_3_PRIME Eip74EF
X	8197487	X_8197487_INS [dm3] X_8303454_INS [dm6]	T	CATTTATA	2.560e^-4	0.985	INTRON nAChRalpha3
3L	5781413	3L_5781413_SNP [dm3] 3L_5788313_SNP [dm6]	T	C	2.569e^-4	0.985	INTERGENIC
X	8863707	X_8863707_INS [dm3] X_8969674_INS [dm6]	T	TAAT	2.612e^-4	0.985	INTRON rdgA
3L	10739354	3L_10739354_SNP [dm3] 3L_10746254_SNP [dm6]	T	A	2.616e^-4	0.985	INTERGENIC
2L	6312346	2L_6312346_SNP [dm3] 2L_6312346_SNP [dm6]	A	C	2.620e^-4	0.985	INTRON Ddr
3R	8094528	3R_8094528_SNP [dm3] 3R_12268806_SNP [dm6]	T	C	2.632e^-4	0.985	INTRON svp EXON CR44039	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17693227	2R_17693227_SNP [dm3] 2R_21805722_SNP [dm6]	A	T	2.638e^-4	0.985	INTERGENIC
3L	5244242	3L_5244242_SNP [dm3] 3L_5251142_SNP [dm6]	A	T	2.653e^-4	0.985	INTRON shep	TF binding site mE1_TFBS_inv
2L	9122218	2L_9122218_SNP [dm3] 2L_9122218_SNP [dm6]	G	A	2.659e^-4	0.985	UPSTREAM CR44616 INTERGENIC
2R	9690566	2R_9690566_SNP [dm3] 2R_13803061_SNP [dm6]	G	T	2.670e^-4	0.985	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
2L	12249967	2L_12249967_SNP [dm3] 2L_12249967_SNP [dm6]	C	T	2.762e^-4	0.985	INTRON aret
2R	16426277	2R_16426277_SNP [dm3] 2R_20538772_SNP [dm6]	G	C	2.763e^-4	0.985	DOWNSTREAM CG13427 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11695995	X_11695995_SNP [dm3] X_11801962_SNP [dm6]	C	T	2.777e^-4	0.985	UTR_3_PRIME Hsc70-3 DOWNSTREAM CkIIbeta
2R	11789991	2R_11789991_SNP [dm3] 2R_15902486_SNP [dm6]	A	C	2.778e^-4	0.985	INTRON sli	TF binding site BDTNP1_TFBS_twi
2L	8823720	2L_8823720_SNP [dm3] 2L_8823720_SNP [dm6]	G	A	2.803e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5649890	2L_5649890_SNP [dm3] 2L_5649890_SNP [dm6]	C	A	2.804e^-4	0.985	INTRON CG31646
3L	17778728	3L_17778728_SNP [dm3] 3L_17785628_SNP [dm6]	C	G	2.817e^-4	0.985	UPSTREAM CR44668 INTERGENIC
2R	10423289	2R_10423289_SNP [dm3] 2R_14535784_SNP [dm6]	G	C	2.818e^-4	0.985	INTRON ttv
X	7697112	X_7697112_SNP [dm3] X_7803079_SNP [dm6]	G	A	2.820e^-4	0.985	INTERGENIC
3R	24785168	3R_24785168_SNP [dm3] 3R_28959446_SNP [dm6]	A	C	2.829e^-4	0.985	INTRON CG14521
2L	8870550	2L_8870550_SNP [dm3] 2L_8870550_SNP [dm6]	G	T	2.839e^-4	0.985	INTERGENIC
2L	8870551	2L_8870551_SNP [dm3] 2L_8870551_SNP [dm6]	G	T	2.839e^-4	0.985	INTERGENIC
2L	8870572	2L_8870572_SNP [dm3] 2L_8870572_SNP [dm6]	T	C	2.839e^-4	0.985	INTERGENIC
2L	7259706	2L_7259706_SNP [dm3] 2L_7259706_SNP [dm6]	C	T	2.840e^-4	0.985	INTRON Wnt4
2L	9327090	2L_9327090_SNP [dm3] 2L_9327090_SNP [dm6]	T	C	2.859e^-4	0.985	UPSTREAM CG17005 DOWNSTREAM CR45456 EXON CR45457	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	14373155	3R_14373155_SNP [dm3] 3R_18547433_SNP [dm6]	A	G	2.864e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8130694	2R_8130694_SNP [dm3] 2R_12243189_SNP [dm6]	A	C	2.865e^-4	0.985	SYNONYMOUS_CODING CG43316 DOWNSTREAM CG43244
2R	11073778	2R_11073778_SNP [dm3] 2R_15186273_SNP [dm6]	T	C	2.865e^-4	0.985	DOWNSTREAM CG43068 INTRON igl
3L	7498943	3L_7498943_SNP [dm3] 3L_7505843_SNP [dm6]	T	G	2.870e^-4	0.985	NON_SYNONYMOUS_CODING CG7548	TF binding site mE1_TFBS_cad
3L	7498957	3L_7498957_SNP [dm3] 3L_7505857_SNP [dm6]	T	G	2.870e^-4	0.985	SYNONYMOUS_CODING CG7548	TF binding site mE1_TFBS_cad
X	3164840	X_3164840_INS [dm3] X_3270807_INS [dm6]	T	TTCGCTTAGCTTT...	2.895e^-4	0.985	INTRON dnc
2R	11790092	2R_11790092_SNP [dm3] 2R_15902587_SNP [dm6]	G	T	2.931e^-4	0.985	INTRON sli	TF binding site BDTNP1_TFBS_twi
2R	15777574	2R_15777574_SNP [dm3] 2R_19890069_SNP [dm6]	T	G	2.949e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	7485312	X_7485312_DEL [dm3] X_7591279_DEL [dm6]	AA	A	2.956e^-4	0.985	INTERGENIC	regulatory region REDfly_CRMs
2R	20060372	2R_20060372_SNP [dm3] 2R_24172849_SNP [dm6]	T	A	2.957e^-4	0.985	DOWNSTREAM mRpS17 INTRON CG3328	TF binding site mE1_TFBS_chinmo
2L	1723603	2L_1723603_SNP [dm3] 2L_1723603_SNP [dm6]	T	C	2.960e^-4	0.985	INTRON Rim2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12665628	3R_12665628_SNP [dm3] 3R_16839906_SNP [dm6]	G	A	2.979e^-4	0.985	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16919141	3L_16919141_INS [dm3] 3L_16926041_INS [dm6]	A	AATAA	2.981e^-4	0.985	INTRON CG13023
3L	3214785	3L_3214785_SNP [dm3] 3L_3214785_SNP [dm6]	A	G	2.985e^-4	0.985	SYNONYMOUS_CODING CG14967
3L	13919792	3L_13919792_SNP [dm3] 3L_13926692_SNP [dm6]	C	T	2.990e^-4	0.985	SYNONYMOUS_CODING CG8833	TF binding site mE1_TFBS_sens
X	6926683	X_6926683_SNP [dm3] X_7032650_SNP [dm6]	A	G	2.994e^-4	0.985	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6926706	X_6926706_DEL [dm3] X_7032673_DEL [dm6]	AA	A	2.994e^-4	0.985	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14933561	2R_14933561_INS [dm3] 2R_19046056_INS [dm6]	G	GA	2.995e^-4	0.985	INTERGENIC
2R	16425858	2R_16425858_SNP [dm3] 2R_20538353_SNP [dm6]	T	G	2.998e^-4	0.985	DOWNSTREAM CG13427 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6574507	3L_6574507_SNP [dm3] 3L_6581407_SNP [dm6]	T	C	3.003e^-4	0.985	INTRON CG18769 & 1 other
3L	6575561	3L_6575561_SNP [dm3] 3L_6582461_SNP [dm6]	T	A	3.003e^-4	0.985	INTRON CG18769 & 1 other
3L	6575918	3L_6575918_DEL [dm3] 3L_6582818_DEL [dm6]	TCATTATAAACTGGAACACA...	T	3.003e^-4	0.985	INTRON CG18769 & 1 other
3R	12713092	3R_12713092_SNP [dm3] 3R_16887370_SNP [dm6]	C	A	3.010e^-4	0.985	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10082329	3R_10082329_SNP [dm3] 3R_14256607_SNP [dm6]	T	A	3.050e^-4	0.985	INTRON Aats-met & 1 other
2R	15775763	2R_15775763_SNP [dm3] 2R_19888258_SNP [dm6]	A	G	3.058e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13221736	2R_13221736_SNP [dm3] 2R_17334231_SNP [dm6]	C	A	3.066e^-4	0.985	INTRON mbl
2L	2724719	2L_2724719_SNP [dm3] 2L_2724719_SNP [dm6]	T	A	3.083e^-4	0.985	UPSTREAM CG31689 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7187182	2L_7187182_SNP [dm3] 2L_7187182_SNP [dm6]	C	T	3.095e^-4	0.985	NON_SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA
X	21308277	X_21308277_SNP [dm3] X_21437250_SNP [dm6]	C	T	3.103e^-4	0.985	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
2L	15114265	2L_15114265_SNP [dm3] 2L_15114265_SNP [dm6]	A	G	3.131e^-4	0.985	INTRON stc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	11811927	X_11811927_SNP [dm3] X_11917894_SNP [dm6]	C	G	3.136e^-4	0.985	UPSTREAM pot EXON CR32661	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7259701	2L_7259701_SNP [dm3] 2L_7259701_SNP [dm6]	C	T	3.149e^-4	0.985	INTRON Wnt4
2R	13320506	2R_13320506_SNP [dm3] 2R_17433001_SNP [dm6]	G	A	3.157e^-4	0.985	SYNONYMOUS_CODING EDTP DOWNSTREAM Lhr	TF binding site mE1_TFBS_sens
3L	16911964	3L_16911964_SNP [dm3] 3L_16918864_SNP [dm6]	T	G	3.168e^-4	0.985	INTRON Lmpt
3L	5859645	3L_5859645_SNP [dm3] 3L_5866545_SNP [dm6]	C	A	3.177e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25091041	3R_25091041_SNP [dm3] 3R_29265319_SNP [dm6]	C	T	3.189e^-4	0.985	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5182282	3L_5182282_SNP [dm3] 3L_5189182_SNP [dm6]	G	T	3.198e^-4	0.985	INTRON shep
2R	8130716	2R_8130716_SNP [dm3] 2R_12243211_SNP [dm6]	A	T	3.205e^-4	0.985	NON_SYNONYMOUS_CODING CG43316 DOWNSTREAM CG43244
X	6926674	X_6926674_SNP [dm3] X_7032641_SNP [dm6]	G	A	3.219e^-4	0.985	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7911133	X_7911133_SNP [dm3] X_8017100_SNP [dm6]	T	C	3.237e^-4	0.985	INTRON Tbh
3L	10851225	3L_10851225_SNP [dm3] 3L_10858125_SNP [dm6]	A	G	3.238e^-4	0.985	UTR_5_PRIME tna UPSTREAM tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17722325	2R_17722325_SNP [dm3] 2R_21834820_SNP [dm6]	T	A	3.258e^-4	0.985	DOWNSTREAM CG4377 INTRON CG4363
2L	14636767	2L_14636767_SNP [dm3] 2L_14636767_SNP [dm6]	T	C	3.271e^-4	0.985	INTRON osp
3L	7760265	3L_7760265_SNP [dm3] 3L_7767165_SNP [dm6]	C	T	3.276e^-4	0.985	UTR_5_PRIME Clk DOWNSTREAM CG32371 INTRON Clk
3R	13158337	3R_13158337_SNP [dm3] 3R_17332615_SNP [dm6]	G	A	3.282e^-4	0.985	SYNONYMOUS_CODING beat-IIa
2R	8813573	2R_8813573_SNP [dm3] 2R_12926068_SNP [dm6]	A	G	3.314e^-4	0.985	INTRON sug	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	6739069	2R_6739069_SNP [dm3] 2R_10851564_SNP [dm6]	C	G	3.325e^-4	0.985	INTRON CG30015
3L	8303020	3L_8303020_SNP [dm3] 3L_8309920_SNP [dm6]	A	G	3.330e^-4	0.985	UPSTREAM BI-1 DOWNSTREAM CG7185 EXON CR45409	TF binding site mE1_TFBS_zfh1
3L	9252122	3L_9252122_SNP [dm3] 3L_9259022_SNP [dm6]	G	A	3.342e^-4	0.985	INTRON GluRIB
3L	15938325	3L_15938325_SNP [dm3] 3L_15945225_SNP [dm6]	T	A	3.343e^-4	0.985	INTRON Pka-C3	TF binding site mE1_TFBS_kn mE1_TFBS_ttk
3L	15940710	3L_15940710_SNP [dm3] 3L_15947610_SNP [dm6]	C	T	3.343e^-4	0.985	INTRON Pka-C3	TF binding site mE1_TFBS_cad
3L	15941055	3L_15941055_SNP [dm3] 3L_15947955_SNP [dm6]	T	C	3.343e^-4	0.985	INTRON Pka-C3
3L	15943565	3L_15943565_MNP [dm3] 3L_15950465_MNP [dm6]	TTC	CAT	3.343e^-4	0.985	INTRON Pka-C3
3L	15943571	3L_15943571_SNP [dm3] 3L_15950471_SNP [dm6]	T	C	3.343e^-4	0.985	INTRON Pka-C3
3L	15943574	3L_15943574_DEL [dm3] 3L_15950474_DEL [dm6]	AA	A	3.343e^-4	0.985	INTRON Pka-C3
3L	15943577	3L_15943577_DEL [dm3] 3L_15950477_DEL [dm6]	CCATTCA	C	3.343e^-4	0.985	INTRON Pka-C3
3L	15943585	3L_15943585_SNP [dm3] 3L_15950485_SNP [dm6]	A	T	3.343e^-4	0.985	INTRON Pka-C3
3L	15943587	3L_15943587_SNP [dm3] 3L_15950487_SNP [dm6]	T	C	3.343e^-4	0.985	INTRON Pka-C3
3L	15943590	3L_15943590_SNP [dm3] 3L_15950490_SNP [dm6]	T	A	3.343e^-4	0.985	INTRON Pka-C3
X	20539078	X_20539078_SNP [dm3] X_20668051_SNP [dm6]	G	T	3.343e^-4	0.985	UPSTREAM CG1835 INTRON CG1835	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11790010	2R_11790010_SNP [dm3] 2R_15902505_SNP [dm6]	T	G	3.350e^-4	0.985	INTRON sli	TF binding site BDTNP1_TFBS_twi
3L	14217072	3L_14217072_SNP [dm3] 3L_14223972_SNP [dm6]	T	C	3.356e^-4	0.985	INTRON nuf
3L	14217123	3L_14217123_SNP [dm3] 3L_14224023_SNP [dm6]	T	C	3.356e^-4	0.985	INTRON nuf
2R	7621156	2R_7621156_SNP [dm3] 2R_11733651_SNP [dm6]	G	T	3.365e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6928830	3R_6928830_SNP [dm3] 3R_11103108_SNP [dm6]	C	T	3.367e^-4	0.985	INTERGENIC
3R	6928839	3R_6928839_SNP [dm3] 3R_11103117_SNP [dm6]	T	C	3.367e^-4	0.985	INTERGENIC
X	16033312	X_16033312_SNP [dm3] X_16139279_SNP [dm6]	T	C	3.399e^-4	0.985	INTRON disco-r	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10330663	2R_10330663_SNP [dm3] 2R_14443158_SNP [dm6]	A	T	3.399e^-4	0.985	INTRON Oaz	TF binding site mE1_TFBS_cad
3R	3726020	3R_3726020_SNP [dm3] 3R_7900298_SNP [dm6]	T	G	3.400e^-4	0.985	SYNONYMOUS_CODING wtrw INTRON mRpS9	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15943351	3L_15943351_INS [dm3] 3L_15950251_INS [dm6]	G	GG	3.401e^-4	0.985	INTRON Pka-C3
2R	5815190	2R_5815190_SNP [dm3] 2R_9927685_SNP [dm6]	A	G	3.402e^-4	0.985	INTRON Mef2
3L	11121807	3L_11121807_SNP [dm3] 3L_11128707_SNP [dm6]	C	T	3.407e^-4	0.985	UTR_5_PRIME CG42575 UPSTREAM CG42575
3R	3665247	3R_3665247_SNP [dm3] 3R_7839525_SNP [dm6]	G	A	3.408e^-4	0.985	INTRON CG34384
X	8197490	X_8197490_SNP [dm3] X_8303457_SNP [dm6]	C	G	3.424e^-4	0.985	INTRON nAChRalpha3
2R	8420796	2R_8420796_SNP [dm3] 2R_12533291_SNP [dm6]	C	T	3.437e^-4	0.985	INTRON fra	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14676542	2R_14676542_SNP [dm3] 2R_18789037_SNP [dm6]	T	G	3.444e^-4	0.985	INTRON CG15080
3L	11051471	3L_11051471_SNP [dm3] 3L_11058371_SNP [dm6]	T	C	3.447e^-4	0.985	SYNONYMOUS_CODING CG7888	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12718350	3L_12718350_SNP [dm3] 3L_12725250_SNP [dm6]	A	G	3.460e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22573881	3R_22573881_SNP [dm3] 3R_26748159_SNP [dm6]	G	A	3.466e^-4	0.985	INTERGENIC
X	6926528	X_6926528_SNP [dm3] X_7032495_SNP [dm6]	A	T	3.467e^-4	0.985	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9275610	3L_9275610_SNP [dm3] 3L_9282510_SNP [dm6]	T	C	3.470e^-4	0.985	INTRON GluRIB
X	13551008	X_13551008_SNP [dm3] X_13656975_SNP [dm6]	T	C	3.473e^-4	0.985	INTRON NFAT
3R	25619905	3R_25619905_SNP [dm3] 3R_29794183_SNP [dm6]	C	T	3.516e^-4	0.985	UPSTREAM sro DOWNSTREAM kay INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11441028	3L_11441028_SNP [dm3] 3L_11447928_SNP [dm6]	A	G	3.520e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12364841	3R_12364841_SNP [dm3] 3R_16539119_SNP [dm6]	T	C	3.521e^-4	0.985	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2R	14152532	2R_14152532_SNP [dm3] 2R_18265027_SNP [dm6]	G	C	3.535e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25325613	3R_25325613_SNP [dm3] 3R_29499891_SNP [dm6]	T	C	3.535e^-4	0.985	SYNONYMOUS_CODING Trc8 DOWNSTREAM CG2010	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12851839	3L_12851839_SNP [dm3] 3L_12858739_SNP [dm6]	A	C	3.547e^-4	0.985	SYNONYMOUS_CODING CG32107
2R	20480787	2R_20480787_SNP [dm3] 2R_24593264_SNP [dm6]	T	G	3.560e^-4	0.985	DOWNSTREAM pio INTRON pio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	721148	3L_721148_DEL [dm3] 3L_721148_DEL [dm6]	TAGCGCACGG	T	3.569e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13770271	2R_13770271_SNP [dm3] 2R_17882766_SNP [dm6]	G	A	3.579e^-4	0.985	UPSTREAM CG30110 INTRON Elk
2L	7268389	2L_7268389_SNP [dm3] 2L_7268389_SNP [dm6]	T	C	3.597e^-4	0.985	INTRON Wnt4
2L	13920844	2L_13920844_SNP [dm3] 2L_13920844_SNP [dm6]	C	T	3.599e^-4	0.985	UTR_3_PRIME CG16886 INTRON Ance-3	TF binding site mE1_TFBS_cad
X	3436289	X_3436289_SNP [dm3] X_3542256_SNP [dm6]	A	T	3.600e^-4	0.985	INTRON CG32791
3R	24775384	3R_24775384_SNP [dm3] 3R_28949662_SNP [dm6]	A	G	3.601e^-4	0.985	INTRON CG14521
3L	6574872	3L_6574872_SNP [dm3] 3L_6581772_SNP [dm6]	G	T	3.606e^-4	0.985	INTRON CG18769 & 1 other
2R	8807211	2R_8807211_SNP [dm3] 2R_12919706_SNP [dm6]	C	T	3.606e^-4	0.985	NON_SYNONYMOUS_CODING NAT1 UTR_5_PRIME NAT1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15594263	3L_15594263_SNP [dm3] 3L_15601163_SNP [dm6]	C	T	3.614e^-4	0.985	INTRON RhoGAP71E
3L	13766163	3L_13766163_INS [dm3] 3L_13773063_INS [dm6]	A	ACTCTTACTTAA...	3.644e^-4	0.985	INTRON bru-3
X	14087811	X_14087811_SNP [dm3] X_14193778_SNP [dm6]	C	G	3.657e^-4	0.985	INTRON yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	9540397	2R_9540397_DEL [dm3] 2R_13652892_DEL [dm6]	AAA	A	3.662e^-4	0.985	INTRON fas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2290783	X_2290783_INS [dm3] X_2396750_INS [dm6]	T	TGTAT	3.664e^-4	0.985	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	15773768	2R_15773768_SNP [dm3] 2R_19886263_SNP [dm6]	T	C	3.670e^-4	0.985	INTERGENIC
2R	14693421	2R_14693421_SNP [dm3] 2R_18805916_SNP [dm6]	C	G	3.681e^-4	0.985	INTRON CR44468 EXON CR44468	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	9421859	X_9421859_SNP [dm3] X_9527826_SNP [dm6]	C	T	3.685e^-4	0.985	INTRON CG32700
3L	12684689	3L_12684689_SNP [dm3] 3L_12691589_SNP [dm6]	A	T	3.692e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14077445	2L_14077445_SNP [dm3] 2L_14077445_SNP [dm6]	T	C	3.732e^-4	0.985	INTRON nAChRalpha5
2L	20437146	2L_20437146_SNP [dm3] 2L_20437146_SNP [dm6]	G	A	3.734e^-4	0.985	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3514398	3L_3514398_SNP [dm3] 3L_3514398_SNP [dm6]	C	T	3.740e^-4	0.985	INTERGENIC
2L	16183762	2L_16183762_SNP [dm3] 2L_16183762_SNP [dm6]	T	C	3.745e^-4	0.985	SPLICE_SITE_REGION Ca-alpha1D INTRON Ca-alpha1D
2R	14152524	2R_14152524_SNP [dm3] 2R_18265019_SNP [dm6]	A	G	3.749e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad
X	17016431	X_17016431_DEL [dm3] X_17122398_DEL [dm6]	ATAATAAT	A	3.756e^-4	0.985	INTRON CG5004	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25090953	3R_25090953_SNP [dm3] 3R_29265231_SNP [dm6]	T	G	3.765e^-4	0.985	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25090975	3R_25090975_SNP [dm3] 3R_29265253_SNP [dm6]	A	G	3.765e^-4	0.985	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18122972	3L_18122972_SNP [dm3] 3L_18129872_SNP [dm6]	C	A	3.765e^-4	0.985	UTR_3_PRIME Cyp312a1 DOWNSTREAM Cyp312a1
3L	2143432	3L_2143432_SNP [dm3] 3L_2143432_SNP [dm6]	C	T	3.772e^-4	0.985	INTRON zormin
3R	4422972	3R_4422972_SNP [dm3] 3R_8597250_SNP [dm6]	C	T	3.774e^-4	0.985	INTRON 5-HT2B
3L	16750521	3L_16750521_SNP [dm3] 3L_16757421_SNP [dm6]	T	C	3.786e^-4	0.985	INTERGENIC
3L	11238621	3L_11238621_SNP [dm3] 3L_11245521_SNP [dm6]	G	A	3.793e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	12638208	2R_12638208_SNP [dm3] 2R_16750703_SNP [dm6]	G	A	3.793e^-4	0.985	UPSTREAM Acp53Ea DOWNSTREAM Acp53C14c & 1 other INTERGENIC
2R	8130725	2R_8130725_SNP [dm3] 2R_12243220_SNP [dm6]	A	G	3.799e^-4	0.985	NON_SYNONYMOUS_CODING CG43316 DOWNSTREAM CG43244
3L	8735151	3L_8735151_SNP [dm3] 3L_8742051_SNP [dm6]	T	C	3.802e^-4	0.985	INTRON Prm
3L	8735152	3L_8735152_SNP [dm3] 3L_8742052_SNP [dm6]	G	C	3.802e^-4	0.985	INTRON Prm
3L	13919819	3L_13919819_SNP [dm3] 3L_13926719_SNP [dm6]	C	T	3.804e^-4	0.985	SYNONYMOUS_CODING CG8833	TF binding site mE1_TFBS_sens
X	12234651	X_12234651_DEL [dm3] X_12340618_DEL [dm6]	GTTGCTGG	G	3.822e^-4	0.985	INTERGENIC
3L	12268933	3L_12268933_INS [dm3] 3L_12275833_INS [dm6]	A	AG	3.852e^-4	0.985	INTRON CG4300	TF binding site BDTNP1_TFBS_twi
3L	7200730	3L_7200730_SNP [dm3] 3L_7207630_SNP [dm6]	C	A	3.860e^-4	0.985	INTERGENIC
2R	13773814	2R_13773814_SNP [dm3] 2R_17886309_SNP [dm6]	A	T	3.880e^-4	0.985	DOWNSTREAM PPO1 INTRON Elk
3L	7223006	3L_7223006_SNP [dm3] 3L_7229906_SNP [dm6]	C	T	3.893e^-4	0.985	INTERGENIC
2R	1903895	2R_1903895_SNP [dm3] 2R_6016390_SNP [dm6]	A	G	3.897e^-4	0.985	UPSTREAM Act42A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
X	14087917	X_14087917_SNP [dm3] X_14193884_SNP [dm6]	G	A	3.917e^-4	0.985	INTRON yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	20096781	2R_20096781_SNP [dm3] 2R_24209258_SNP [dm6]	T	A	3.941e^-4	0.985	INTERGENIC
2L	14429712	2L_14429712_SNP [dm3] 2L_14429712_SNP [dm6]	C	T	3.942e^-4	0.985	EXON CR44732	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	10282316	2L_10282316_SNP [dm3] 2L_10282316_SNP [dm6]	G	C	3.955e^-4	0.985	INTRON CG5604
2L	11752612	2L_11752612_SNP [dm3] 2L_11752612_SNP [dm6]	G	A	3.963e^-4	0.985	DOWNSTREAM CG42470 INTERGENIC
3L	15921289	3L_15921289_SNP [dm3] 3L_15928189_SNP [dm6]	T	C	3.971e^-4	0.985	SYNONYMOUS_CODING Pka-C3
X	10223967	X_10223967_SNP [dm3] X_10329934_SNP [dm6]	G	T	3.981e^-4	0.985	UPSTREAM Gip DOWNSTREAM CG2909 & 1 other INTERGENIC
2L	4285308	2L_4285308_SNP [dm3] 2L_4285308_SNP [dm6]	T	G	3.983e^-4	0.985	INTRON tutl	TF binding site BDTNP1_TFBS_dl
3R	14825754	3R_14825754_SNP [dm3] 3R_19000032_SNP [dm6]	T	G	3.985e^-4	0.985	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10352857	2R_10352857_INS [dm3] 2R_14465352_INS [dm6]	T	TT	3.985e^-4	0.985	UTR_3_PRIME Oaz
2R	10352873	2R_10352873_INS [dm3] 2R_14465368_INS [dm6]	A	ATCTACA	3.985e^-4	0.985	UTR_3_PRIME Oaz
2R	10352880	2R_10352880_SNP [dm3] 2R_14465375_SNP [dm6]	A	T	3.985e^-4	0.985	UTR_3_PRIME Oaz
3L	8692903	3L_8692903_SNP [dm3] 3L_8699803_SNP [dm6]	A	C	3.993e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	18069509	2R_18069509_SNP [dm3] 2R_22182004_SNP [dm6]	T	C	3.999e^-4	0.985	SYNONYMOUS_CODING CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
2R	1388493	2R_1388493_DEL [dm3] 2R_5500988_DEL [dm6]	AG	A	4.002e^-4	0.985	INTRON CG30438	transposable element FlyBase
2R	18069511	2R_18069511_SNP [dm3] 2R_22182006_SNP [dm6]	G	A	4.025e^-4	0.985	NON_SYNONYMOUS_CODING CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
2R	6150528	2R_6150528_SNP [dm3] 2R_10263023_SNP [dm6]	A	G	4.047e^-4	0.985	EXON CR30009
3R	22506853	3R_22506853_SNP [dm3] 3R_26681131_SNP [dm6]	G	A	4.049e^-4	0.985	INTRON beat-VII
3L	12876145	3L_12876145_SNP [dm3] 3L_12883045_SNP [dm6]	C	T	4.064e^-4	0.985	INTERGENIC
2L	2724679	2L_2724679_SNP [dm3] 2L_2724679_SNP [dm6]	C	G	4.065e^-4	0.985	UPSTREAM CG31689 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	6150542	2R_6150542_SNP [dm3] 2R_10263037_SNP [dm6]	T	C	4.066e^-4	0.985	EXON CR30009
X	8904435	X_8904435_SNP [dm3] X_9010402_SNP [dm6]	A	T	4.098e^-4	0.985	INTRON rdgA & 1 other
3L	15942763	3L_15942763_SNP [dm3] 3L_15949663_SNP [dm6]	G	A	4.101e^-4	0.985	INTRON Pka-C3
3L	15942810	3L_15942810_SNP [dm3] 3L_15949710_SNP [dm6]	T	G	4.101e^-4	0.985	INTRON Pka-C3
3L	622457	3L_622457_SNP [dm3] 3L_622457_SNP [dm6]	A	G	4.109e^-4	0.985	UPSTREAM CG43337 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E
X	6926555	X_6926555_DEL [dm3] X_7032522_DEL [dm6]	TT	T	4.149e^-4	0.985	INTRON CG12541	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22960740	3L_22960740_SNP [dm3] 3L_22967640_SNP [dm6]	C	A	4.160e^-4	0.985	INTERGENIC
X	596427	X_596427_SNP [dm3] X_702394_SNP [dm6]	T	A	4.170e^-4	0.985	INTRON sdk	TF binding site mE1_TFBS_HSA
X	597039	X_597039_SNP [dm3] X_703006_SNP [dm6]	T	C	4.170e^-4	0.985	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5637084	3L_5637084_SNP [dm3] 3L_5643984_SNP [dm6]	G	A	4.193e^-4	0.985	INTRON Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20317822	2L_20317822_SNP [dm3] 2L_20317822_SNP [dm6]	T	C	4.199e^-4	0.985	UPSTREAM CR43606 INTRON spir
2L	10560881	2L_10560881_SNP [dm3] 2L_10560881_SNP [dm6]	T	G	4.203e^-4	0.985	INTRON Trim9
2R	16809442	2R_16809442_SNP [dm3] 2R_20921937_SNP [dm6]	A	T	4.204e^-4	0.985	INTRON Rx
3L	16922076	3L_16922076_SNP [dm3] 3L_16928976_SNP [dm6]	T	G	4.212e^-4	0.985	DOWNSTREAM CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8867577	X_8867577_SNP [dm3] X_8973544_SNP [dm6]	A	C	4.214e^-4	0.985	INTRON rdgA & 2 others
2R	6384325	2R_6384325_SNP [dm3] 2R_10496820_SNP [dm6]	C	G	4.247e^-4	0.985	UTR_3_PRIME lola INTRON lola
3L	2424562	3L_2424562_SNP [dm3] 3L_2424562_SNP [dm6]	C	G	4.260e^-4	0.985	INTRON CG45186
3R	8823133	3R_8823133_SNP [dm3] 3R_12997411_SNP [dm6]	C	A	4.283e^-4	0.985	NON_SYNONYMOUS_CODING CG44194 UTR_5_PRIME CG17327 UPSTREAM CG7518 DOWNSTREAM CG7488	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	5243988	3L_5243988_SNP [dm3] 3L_5250888_SNP [dm6]	C	A	4.290e^-4	0.985	INTRON shep
3L	5244007	3L_5244007_SNP [dm3] 3L_5250907_SNP [dm6]	T	C	4.290e^-4	0.985	INTRON shep
3L	5244117	3L_5244117_SNP [dm3] 3L_5251017_SNP [dm6]	T	A	4.290e^-4	0.985	INTRON shep
3L	5244119	3L_5244119_SNP [dm3] 3L_5251019_SNP [dm6]	C	T	4.290e^-4	0.985	INTRON shep
3L	9018225	3L_9018225_SNP [dm3] 3L_9025125_SNP [dm6]	G	A	4.306e^-4	0.985	INTERGENIC
3L	3413019	3L_3413019_SNP [dm3] 3L_3413019_SNP [dm6]	C	T	4.313e^-4	0.985	UPSTREAM mir-2282 INTRON sty
3L	3413027	3L_3413027_SNP [dm3] 3L_3413027_SNP [dm6]	T	G	4.313e^-4	0.985	UPSTREAM mir-2282 INTRON sty
2L	18398200	2L_18398200_SNP [dm3] 2L_18398200_SNP [dm6]	T	C	4.316e^-4	0.985	INTERGENIC
X	11626654	X_11626654_SNP [dm3] X_11732621_SNP [dm6]	T	C	4.332e^-4	0.985	SYNONYMOUS_CODING inaF-B UPSTREAM inaF-C INTRON CG15221 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20927473	X_20927473_SNP [dm3] X_21056446_SNP [dm6]	C	T	4.351e^-4	0.985	INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	14630806	X_14630806_SNP [dm3] X_14736773_SNP [dm6]	G	A	4.354e^-4	0.985	INTRON NetB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22574287	3R_22574287_SNP [dm3] 3R_26748565_SNP [dm6]	C	T	4.356e^-4	0.985	INTERGENIC
3L	16257935	3L_16257935_SNP [dm3] 3L_16264835_SNP [dm6]	A	G	4.376e^-4	0.985	SYNONYMOUS_CODING CG13051 UPSTREAM CG13069 DOWNSTREAM CG13070 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13120882	3L_13120882_DEL [dm3] 3L_13127782_DEL [dm6]	TT	T	4.379e^-4	0.985	INTERGENIC
2R	16078239	2R_16078239_SNP [dm3] 2R_20190734_SNP [dm6]	C	T	4.379e^-4	0.985	INTERGENIC
3L	16044625	3L_16044625_SNP [dm3] 3L_16051525_SNP [dm6]	C	A	4.384e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_sbb mE1_TFBS_Trl mE1_TFBS_zfh1
2R	20096823	2R_20096823_SNP [dm3] 2R_24209300_SNP [dm6]	C	G	4.394e^-4	0.985	INTERGENIC
2R	14152548	2R_14152548_SNP [dm3] 2R_18265043_SNP [dm6]	T	G	4.422e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9122220	2L_9122220_SNP [dm3] 2L_9122220_SNP [dm6]	G	T	4.427e^-4	0.985	UPSTREAM CR44616 INTERGENIC
2L	9122226	2L_9122226_SNP [dm3] 2L_9122226_SNP [dm6]	G	T	4.427e^-4	0.985	UPSTREAM CR44616 INTERGENIC
3L	5921498	3L_5921498_SNP [dm3] 3L_5928398_SNP [dm6]	T	A	4.427e^-4	0.985	UPSTREAM Vap-33B INTRON Vap-33B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5357150	X_5357150_SNP [dm3] X_5463117_SNP [dm6]	T	C	4.428e^-4	0.985	INTRON SPR
2R	18040510	2R_18040510_SNP [dm3] 2R_22153005_SNP [dm6]	A	G	4.442e^-4	0.985	INTRON a	TF binding site mE1_TFBS_cnc
3L	8740884	3L_8740884_SNP [dm3] 3L_8747784_SNP [dm6]	T	C	4.442e^-4	0.985	INTERGENIC
3L	8740894	3L_8740894_SNP [dm3] 3L_8747794_SNP [dm6]	A	G	4.442e^-4	0.985	INTERGENIC
3R	25208069	3R_25208069_SNP [dm3] 3R_29382347_SNP [dm6]	C	G	4.458e^-4	0.985	INTRON Ptp99A
X	8666689	X_8666689_SNP [dm3] X_8772656_SNP [dm6]	T	C	4.525e^-4	0.985	INTRON Lim1
X	8666735	X_8666735_SNP [dm3] X_8772702_SNP [dm6]	C	T	4.525e^-4	0.985	INTRON Lim1
X	16515185	X_16515185_SNP [dm3] X_16621152_SNP [dm6]	C	A	4.548e^-4	0.985	INTRON CG9782
2L	6128013	2L_6128013_SNP [dm3] 2L_6128013_SNP [dm6]	C	T	4.568e^-4	0.985	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6128019	2L_6128019_SNP [dm3] 2L_6128019_SNP [dm6]	T	C	4.568e^-4	0.985	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12749460	3L_12749460_SNP [dm3] 3L_12756360_SNP [dm6]	G	T	4.572e^-4	0.985	INTRON CG32113
3L	11095835	3L_11095835_SNP [dm3] 3L_11102735_SNP [dm6]	G	C	4.580e^-4	0.985	SYNONYMOUS_CODING Elo68alpha DOWNSTREAM CG32071
3L	7223011	3L_7223011_SNP [dm3] 3L_7229911_SNP [dm6]	A	T	4.605e^-4	0.985	INTERGENIC
3L	8798791	3L_8798791_SNP [dm3] 3L_8805691_SNP [dm6]	C	G	4.612e^-4	0.985	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
3L	8798797	3L_8798797_SNP [dm3] 3L_8805697_SNP [dm6]	T	C	4.612e^-4	0.985	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
3L	8798809	3L_8798809_SNP [dm3] 3L_8805709_SNP [dm6]	A	G	4.612e^-4	0.985	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312	TF binding site mE1_TFBS_chinmo
X	16033359	X_16033359_SNP [dm3] X_16139326_SNP [dm6]	A	C	4.631e^-4	0.985	INTRON disco-r	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12198089	2R_12198089_SNP [dm3] 2R_16310584_SNP [dm6]	C	T	4.663e^-4	0.985	INTRON Nox	TF binding site mE1_TFBS_chinmo
3R	23783558	3R_23783558_SNP [dm3] 3R_27957836_SNP [dm6]	T	G	4.681e^-4	0.985	SYNONYMOUS_CODING CG4884 UTR_3_PRIME CG42487 DOWNSTREAM CG5527	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	14077507	2L_14077507_DEL [dm3] 2L_14077507_DEL [dm6]	AA	A	4.684e^-4	0.985	INTRON nAChRalpha5
3L	4054797	3L_4054797_SNP [dm3] 3L_4054797_SNP [dm6]	T	A	4.689e^-4	0.985	INTRON CG1136
2L	7259808	2L_7259808_SNP [dm3] 2L_7259808_SNP [dm6]	A	G	4.692e^-4	0.985	INTRON Wnt4
2R	15776493	2R_15776493_SNP [dm3] 2R_19888988_SNP [dm6]	T	C	4.727e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13184427	2R_13184427_SNP [dm3] 2R_17296922_SNP [dm6]	T	A	4.735e^-4	0.985	INTRON mbl
2L	18545154	2L_18545154_DEL [dm3] 2L_18545154_DEL [dm6]	AA	A	4.779e^-4	0.985	INTRON Pde11
2L	10500615	2L_10500615_SNP [dm3] 2L_10500615_SNP [dm6]	T	A	4.789e^-4	0.985	INTRON Myo31DF
3L	16934529	3L_16934529_SNP [dm3] 3L_16941429_SNP [dm6]	A	G	4.790e^-4	0.985	INTRON Cpr73D
3L	16934533	3L_16934533_SNP [dm3] 3L_16941433_SNP [dm6]	G	C	4.790e^-4	0.985	INTRON Cpr73D
3R	13137509	3R_13137509_SNP [dm3] 3R_17311787_SNP [dm6]	G	T	4.807e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	9100324	X_9100324_SNP [dm3] X_9206291_SNP [dm6]	C	A	4.814e^-4	0.985	UTR_3_PRIME CG12119
3L	9363433	3L_9363433_SNP [dm3] 3L_9370333_SNP [dm6]	C	T	4.835e^-4	0.985	UTR_3_PRIME Fdxh DOWNSTREAM CG4452
2R	16813635	2R_16813635_SNP [dm3] 2R_20926130_SNP [dm6]	A	G	4.856e^-4	0.985	INTRON Rx
3L	8735196	3L_8735196_SNP [dm3] 3L_8742096_SNP [dm6]	C	T	4.881e^-4	0.985	INTRON Prm
2L	6086467	2L_6086467_SNP [dm3] 2L_6086467_SNP [dm6]	A	G	4.890e^-4	0.985	INTRON Kr-h1
2L	4949305	2L_4949305_SNP [dm3] 2L_4949305_SNP [dm6]	T	C	4.910e^-4	0.985	SYNONYMOUS_CODING jet DOWNSTREAM betaggt-I & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14600767	X_14600767_SNP [dm3] X_14706734_SNP [dm6]	T	G	4.923e^-4	0.985	INTRON NetB
2L	1906562	2L_1906562_SNP [dm3] 2L_1906562_SNP [dm6]	G	C	4.923e^-4	0.985	INTRON CG7337
X	14943739	X_14943739_SNP [dm3] X_15049706_SNP [dm6]	A	G	4.928e^-4	0.985	INTRON hiw & 1 other	TF binding site mE1_TFBS_inv
2R	13518635	2R_13518635_SNP [dm3] 2R_17631130_SNP [dm6]	T	G	4.952e^-4	0.985	INTRON CG10936 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7003055	2L_7003055_SNP [dm3] 2L_7003055_SNP [dm6]	C	T	4.959e^-4	0.985	INTRON uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	11831052	2R_11831052_SNP [dm3] 2R_15943547_SNP [dm6]	C	T	4.963e^-4	0.985	UPSTREAM CG30093 INTRON Cyp4aa1
X	12133919	X_12133919_SNP [dm3] X_12239886_SNP [dm6]	T	A	4.972e^-4	0.985	INTRON Ten-a
X	18484004	X_18484004_SNP [dm3] X_18589971_SNP [dm6]	G	A	4.989e^-4	0.985	INTERGENIC
X	9858685	X_9858685_SNP [dm3] X_9964652_SNP [dm6]	C	T	5.008e^-4	0.985	SYNONYMOUS_CODING CG1791 UTR_5_PRIME CG1791 UPSTREAM CG1889
3L	8740768	3L_8740768_SNP [dm3] 3L_8747668_SNP [dm6]	T	C	5.010e^-4	0.985	INTERGENIC
3L	8740827	3L_8740827_SNP [dm3] 3L_8747727_SNP [dm6]	A	C	5.010e^-4	0.985	INTERGENIC
2R	5815230	2R_5815230_SNP [dm3] 2R_9927725_SNP [dm6]	T	C	5.051e^-4	0.985	INTRON Mef2
3L	462073	3L_462073_SNP [dm3] 3L_462073_SNP [dm6]	A	C	5.058e^-4	0.985	INTRON klar
3L	5344946	3L_5344946_SNP [dm3] 3L_5351846_SNP [dm6]	T	A	5.067e^-4	0.985	UPSTREAM lama INTRON lama	TF binding site mE1_TFBS_HSA
3L	10907490	3L_10907490_SNP [dm3] 3L_10914390_SNP [dm6]	G	A	5.075e^-4	0.985	INTERGENIC
2L	828670	2L_828670_SNP [dm3] 2L_828670_SNP [dm6]	A	T	5.101e^-4	0.985	INTRON dock	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6793628	2R_6793628_SNP [dm3] 2R_10906123_SNP [dm6]	T	A	5.107e^-4	0.985	DOWNSTREAM CG12943 INTERGENIC
2L	8869024	2L_8869024_SNP [dm3] 2L_8869024_SNP [dm6]	C	T	5.111e^-4	0.985	DOWNSTREAM CR44414 INTERGENIC
2L	3335454	2L_3335454_SNP [dm3] 2L_3335454_SNP [dm6]	A	T	5.113e^-4	0.985	UTR_3_PRIME E23 DOWNSTREAM CG15408
2L	12063941	2L_12063941_SNP [dm3] 2L_12063941_SNP [dm6]	A	G	5.114e^-4	0.985	SYNONYMOUS_CODING CG14946 UPSTREAM Rab3-GAP	TF binding site mE1_TFBS_sens
2R	13184702	2R_13184702_DEL [dm3] 2R_17297197_DEL [dm6]	GTG	G	5.134e^-4	0.985	INTRON mbl
3L	2622908	3L_2622908_SNP [dm3] 3L_2622908_SNP [dm6]	A	G	5.138e^-4	0.985	INTRON Pxn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1328400	3L_1328400_SNP [dm3] 3L_1328400_SNP [dm6]	A	G	5.155e^-4	0.985	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9941620	2L_9941620_SNP [dm3] 2L_9941620_SNP [dm6]	T	A	5.180e^-4	0.985	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619 DOWNSTREAM CG4619	TF binding site mE1_TFBS_sens
2L	11160860	2L_11160860_SNP [dm3] 2L_11160860_SNP [dm6]	A	G	5.184e^-4	0.985	INTRON Ca-beta
X	11205458	X_11205458_SNP [dm3] X_11311425_SNP [dm6]	C	G	5.195e^-4	0.985	UPSTREAM Ir10a INTERGENIC
X	1982697	X_1982697_SNP [dm3] X_2088664_SNP [dm6]	G	A	5.201e^-4	0.985	UPSTREAM Unc-76 INTRON Unc-76
3L	3815186	3L_3815186_SNP [dm3] 3L_3815186_SNP [dm6]	C	G	5.204e^-4	0.985	DOWNSTREAM CR45034 & 1 other INTRON Scsalpha & 1 other
2L	5126814	2L_5126814_SNP [dm3] 2L_5126814_SNP [dm6]	G	T	5.218e^-4	0.985	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24294128	3R_24294128_DEL [dm3] 3R_28468406_DEL [dm6]	AGGGCTAATTTTCTA...	A	5.233e^-4	0.985	INTRON beat-VI
3R	24294148	3R_24294148_SNP [dm3] 3R_28468426_SNP [dm6]	G	A	5.233e^-4	0.985	INTRON beat-VI
3R	24294153	3R_24294153_SNP [dm3] 3R_28468431_SNP [dm6]	A	T	5.233e^-4	0.985	INTRON beat-VI
3R	24294165	3R_24294165_SNP [dm3] 3R_28468443_SNP [dm6]	C	A	5.233e^-4	0.985	INTRON beat-VI
2L	12267644	2L_12267644_SNP [dm3] 2L_12267644_SNP [dm6]	G	A	5.240e^-4	0.985	INTRON aret
3R	9495312	3R_9495312_SNP [dm3] 3R_13669590_SNP [dm6]	G	A	5.274e^-4	0.985	NON_SYNONYMOUS_CODING Task6	TF binding site mE1_TFBS_inv
2R	17154670	2R_17154670_SNP [dm3] 2R_21267165_SNP [dm6]	C	A	5.274e^-4	0.985	SYNONYMOUS_CODING CG30393 UPSTREAM CG30391 INTRON Rgk3	TF binding site mE1_TFBS_chinmo
2L	3621941	2L_3621941_DEL [dm3] 2L_3621941_DEL [dm6]	AG	A	5.288e^-4	0.985	UPSTREAM CG15418 DOWNSTREAM for & 1 other INTERGENIC
2L	4492263	2L_4492263_SNP [dm3] 2L_4492263_SNP [dm6]	G	T	5.294e^-4	0.985	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_sens
2R	8130715	2R_8130715_SNP [dm3] 2R_12243210_SNP [dm6]	C	A	5.322e^-4	0.985	SYNONYMOUS_CODING CG43316 DOWNSTREAM CG43244
X	19368654	X_19368654_SNP [dm3] X_19474621_SNP [dm6]	G	A	5.330e^-4	0.985	NON_SYNONYMOUS_CODING CG32533 UPSTREAM CG12200	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7523330	2R_7523330_SNP [dm3] 2R_11635825_SNP [dm6]	C	T	5.355e^-4	0.985	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6312210	2L_6312210_SNP [dm3] 2L_6312210_SNP [dm6]	C	G	5.355e^-4	0.985	INTRON Ddr
2L	6312218	2L_6312218_SNP [dm3] 2L_6312218_SNP [dm6]	T	C	5.355e^-4	0.985	INTRON Ddr
2L	6312353	2L_6312353_SNP [dm3] 2L_6312353_SNP [dm6]	C	A	5.355e^-4	0.985	INTRON Ddr
2L	6312418	2L_6312418_SNP [dm3] 2L_6312418_SNP [dm6]	T	A	5.355e^-4	0.985	INTRON Ddr
2L	6312421	2L_6312421_SNP [dm3] 2L_6312421_SNP [dm6]	C	A	5.355e^-4	0.985	INTRON Ddr
2L	6312427	2L_6312427_SNP [dm3] 2L_6312427_SNP [dm6]	T	A	5.355e^-4	0.985	INTRON Ddr
2L	6312428	2L_6312428_SNP [dm3] 2L_6312428_SNP [dm6]	T	C	5.355e^-4	0.985	INTRON Ddr
3L	8599125	3L_8599125_SNP [dm3] 3L_8606025_SNP [dm6]	T	C	5.368e^-4	0.985	INTRON CG6282
3L	9398836	3L_9398836_SNP [dm3] 3L_9405736_SNP [dm6]	G	A	5.373e^-4	0.985	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022
2R	11073583	2R_11073583_SNP [dm3] 2R_15186078_SNP [dm6]	G	T	5.376e^-4	0.985	DOWNSTREAM CG43068 INTRON igl
2L	14750274	2L_14750274_SNP [dm3] 2L_14750274_SNP [dm6]	A	C	5.379e^-4	0.985	INTERGENIC
3L	529508	3L_529508_SNP [dm3] 3L_529508_SNP [dm6]	T	A	5.391e^-4	0.985	DOWNSTREAM CG34269 INTRON klar	TF binding site BDTNP1_TFBS_twi
2L	6312386	2L_6312386_SNP [dm3] 2L_6312386_SNP [dm6]	C	A	5.395e^-4	0.985	INTRON Ddr
3R	8170711	3R_8170711_SNP [dm3] 3R_12344989_SNP [dm6]	T	C	5.404e^-4	0.985	INTERGENIC
3L	14618739	3L_14618739_SNP [dm3] 3L_14625639_SNP [dm6]	T	G	5.410e^-4	0.985	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	13336655	3L_13336655_SNP [dm3] 3L_13343555_SNP [dm6]	G	A	5.445e^-4	0.985	EXON CR44559
3R	4611315	3R_4611315_SNP [dm3] 3R_8785593_SNP [dm6]	G	A	5.447e^-4	0.985	INTRON Pif1B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25149891	3R_25149891_SNP [dm3] 3R_29324169_SNP [dm6]	A	T	5.467e^-4	0.985	INTERGENIC
3L	11300381	3L_11300381_SNP [dm3] 3L_11307281_SNP [dm6]	G	T	5.481e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad
X	6491284	X_6491284_SNP [dm3] X_6597251_SNP [dm6]	C	T	5.500e^-4	0.985	UTR_5_PRIME APC7 DOWNSTREAM Pat1 INTRON APC7
2L	18545141	2L_18545141_SNP [dm3] 2L_18545141_SNP [dm6]	C	T	5.509e^-4	0.985	INTRON Pde11
3L	3209652	3L_3209652_SNP [dm3] 3L_3209652_SNP [dm6]	T	C	5.510e^-4	0.985	SYNONYMOUS_CODING gry UPSTREAM CG32270 & 1 other	TF binding site mE1_TFBS_chinmo
3L	8486205	3L_8486205_SNP [dm3] 3L_8493105_SNP [dm6]	G	A	5.510e^-4	0.985	INTRON CG43163	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9753865	3L_9753865_SNP [dm3] 3L_9760765_SNP [dm6]	T	C	5.530e^-4	0.985	UPSTREAM CR45407 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	11414605	3L_11414605_SNP [dm3] 3L_11421505_SNP [dm6]	G	A	5.547e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	6699956	3R_6699956_SNP [dm3] 3R_10874234_SNP [dm6]	C	A	5.552e^-4	0.985	SYNONYMOUS_CODING CG4596	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10606361	2R_10606361_SNP [dm3] 2R_14718856_SNP [dm6]	G	C	5.571e^-4	0.985	INTERGENIC
3L	14681648	3L_14681648_SNP [dm3] 3L_14688548_SNP [dm6]	A	T	5.585e^-4	0.985	INTRON ome
X	15072484	X_15072484_SNP [dm3] X_15178451_SNP [dm6]	C	T	5.606e^-4	0.985	UTR_5_PRIME CG43737	TF binding site mE1_TFBS_chinmo
3L	7451137	3L_7451137_INS [dm3] 3L_7458037_INS [dm6]	A	TG	5.610e^-4	0.985	INTRON ppk26
3L	6654904	3L_6654904_SNP [dm3] 3L_6661804_SNP [dm6]	T	C	5.611e^-4	0.985	INTERGENIC
X	7911129	X_7911129_SNP [dm3] X_8017096_SNP [dm6]	T	G	5.611e^-4	0.985	INTRON Tbh
3L	6256749	3L_6256749_SNP [dm3] 3L_6263649_SNP [dm6]	A	T	5.618e^-4	0.985	UPSTREAM ImpL3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16044387	3L_16044387_SNP [dm3] 3L_16051287_SNP [dm6]	T	A	5.635e^-4	0.985	UPSTREAM th & 1 other DOWNSTREAM CR43951 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16044427	3L_16044427_SNP [dm3] 3L_16051327_SNP [dm6]	T	G	5.635e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16044443	3L_16044443_SNP [dm3] 3L_16051343_SNP [dm6]	A	T	5.635e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16044478	3L_16044478_SNP [dm3] 3L_16051378_SNP [dm6]	C	T	5.635e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16044481	3L_16044481_SNP [dm3] 3L_16051381_SNP [dm6]	A	T	5.635e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16044513	3L_16044513_SNP [dm3] 3L_16051413_SNP [dm6]	G	C	5.635e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16044529	3L_16044529_SNP [dm3] 3L_16051429_SNP [dm6]	T	C	5.635e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_sbb mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16044530	3L_16044530_SNP [dm3] 3L_16051430_SNP [dm6]	A	T	5.635e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_sbb mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16044540	3L_16044540_SNP [dm3] 3L_16051440_SNP [dm6]	C	A	5.635e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_sbb mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16044571	3L_16044571_SNP [dm3] 3L_16051471_SNP [dm6]	T	C	5.635e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_sbb mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16044574	3L_16044574_SNP [dm3] 3L_16051474_SNP [dm6]	A	G	5.635e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_sbb mE1_TFBS_Trl mE1_TFBS_zfh1
3L	6586109	3L_6586109_SNP [dm3] 3L_6593009_SNP [dm6]	A	T	5.655e^-4	0.985	UTR_3_PRIME CG18769 DOWNSTREAM CG18769 & 1 other	transposable element FlyBase
3L	15203422	3L_15203422_SNP [dm3] 3L_15210322_SNP [dm6]	G	A	5.680e^-4	0.985	INTERGENIC
2R	4310219	2R_4310219_SNP [dm3] 2R_8422714_SNP [dm6]	A	C	5.698e^-4	0.985	INTRON CSN7
3L	14217963	3L_14217963_SNP [dm3] 3L_14224863_SNP [dm6]	C	T	5.703e^-4	0.985	INTRON nuf
3R	7177385	3R_7177385_SNP [dm3] 3R_11351663_SNP [dm6]	T	A	5.724e^-4	0.985	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	14027196	X_14027196_SNP [dm3] X_14133163_SNP [dm6]	G	A	5.729e^-4	0.985	INTERGENIC
2R	10235301	2R_10235301_SNP [dm3] 2R_14347796_SNP [dm6]	C	T	5.732e^-4	0.985	INTRON Shroom
3R	25090994	3R_25090994_SNP [dm3] 3R_29265272_SNP [dm6]	T	A	5.741e^-4	0.985	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	16790681	3L_16790681_SNP [dm3] 3L_16797581_SNP [dm6]	G	C	5.784e^-4	0.985	INTRON CG9674
3L	7200847	3L_7200847_SNP [dm3] 3L_7207747_SNP [dm6]	C	T	5.805e^-4	0.985	INTERGENIC
2R	13583445	2R_13583445_SNP [dm3] 2R_17695940_SNP [dm6]	C	T	5.807e^-4	0.985	UTR_3_PRIME rdgBbeta UPSTREAM swi2
2R	14152608	2R_14152608_SNP [dm3] 2R_18265103_SNP [dm6]	T	C	5.815e^-4	0.985	INTERGENIC
2L	19209399	2L_19209399_SNP [dm3] 2L_19209399_SNP [dm6]	C	G	5.826e^-4	0.985	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2607543	2L_2607543_SNP [dm3] 2L_2607543_SNP [dm6]	A	G	5.828e^-4	0.985	INTERGENIC
X	9421800	X_9421800_SNP [dm3] X_9527767_SNP [dm6]	A	T	5.828e^-4	0.985	INTRON CG32700
2R	20480800	2R_20480800_SNP [dm3] 2R_24593277_SNP [dm6]	A	G	5.830e^-4	0.985	DOWNSTREAM pio INTRON pio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4649658	3L_4649658_SNP [dm3] 3L_4649658_SNP [dm6]	C	G	5.867e^-4	0.985	SYNONYMOUS_CODING CG32238 INTRON axo	TF binding site BDTNP1_TFBS_prd
2L	14750228	2L_14750228_SNP [dm3] 2L_14750228_SNP [dm6]	A	G	5.877e^-4	0.985	INTERGENIC
2R	16242935	2R_16242935_SNP [dm3] 2R_20355430_SNP [dm6]	C	T	5.878e^-4	0.985	UPSTREAM CG11192 INTERGENIC
2R	16242940	2R_16242940_SNP [dm3] 2R_20355435_SNP [dm6]	A	C	5.878e^-4	0.985	UPSTREAM CG11192 INTERGENIC
2R	17907619	2R_17907619_DEL [dm3] 2R_22020114_DEL [dm6]	CC	C	5.879e^-4	0.985	INTRON CG34370
2R	17907626	2R_17907626_SNP [dm3] 2R_22020121_SNP [dm6]	G	A	5.879e^-4	0.985	INTRON CG34370
3L	5850632	3L_5850632_SNP [dm3] 3L_5857532_SNP [dm6]	C	T	5.879e^-4	0.985	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	18603464	2L_18603464_SNP [dm3] 2L_18603464_SNP [dm6]	C	A	5.895e^-4	0.985	INTRON CG10413
2L	18603589	2L_18603589_INS [dm3] 2L_18603589_INS [dm6]	C	CTCAAATATGTAAACATCC...	5.895e^-4	0.985	INTRON CG10413
2L	18603654	2L_18603654_DEL [dm3] 2L_18603654_DEL [dm6]	ATCAA	A	5.895e^-4	0.985	INTRON CG10413
2L	18603677	2L_18603677_DEL [dm3] 2L_18603677_DEL [dm6]	TTTTCCCCGATGTACT...	T	5.895e^-4	0.985	INTRON CG10413
2R	8130722	2R_8130722_SNP [dm3] 2R_12243217_SNP [dm6]	C	T	5.911e^-4	0.985	SYNONYMOUS_CODING CG43316 DOWNSTREAM CG43244
2R	15787122	2R_15787122_SNP [dm3] 2R_19899617_SNP [dm6]	T	G	5.916e^-4	0.985	UPSTREAM CR44572 INTERGENIC
2L	6372746	2L_6372746_INS [dm3] 2L_6372746_INS [dm6]	A	AAAA	5.916e^-4	0.985	UPSTREAM slam INTRON slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	563753	X_563753_SNP [dm3] X_669720_SNP [dm6]	G	A	5.917e^-4	0.985	INTERGENIC
2L	10134248	2L_10134248_SNP [dm3] 2L_10134248_SNP [dm6]	T	C	5.937e^-4	0.985	INTRON CG44153
3R	13923049	3R_13923049_SNP [dm3] 3R_18097327_SNP [dm6]	C	T	5.953e^-4	0.985	INTRON sr
2R	20198684	2R_20198684_SNP [dm3] 2R_24311161_SNP [dm6]	T	A	5.972e^-4	0.985	INTRON betaTub60D	TF binding site mE1_TFBS_chinmo
2R	19005013	2R_19005013_SNP [dm3] 2R_23117490_SNP [dm6]	T	C	5.973e^-4	0.985	INTERGENIC
3L	3140889	3L_3140889_SNP [dm3] 3L_3140889_SNP [dm6]	G	A	5.978e^-4	0.985	UPSTREAM CG11537 INTRON CG11537
3R	9566325	3R_9566325_SNP [dm3] 3R_13740603_SNP [dm6]	A	C	5.979e^-4	0.985	INTRON CG34383
3R	9566327	3R_9566327_SNP [dm3] 3R_13740605_SNP [dm6]	A	T	5.979e^-4	0.985	INTRON CG34383
2R	5809591	2R_5809591_SNP [dm3] 2R_9922086_SNP [dm6]	T	C	5.985e^-4	0.985	INTRON Mef2
3L	1727645	3L_1727645_SNP [dm3] 3L_1727645_SNP [dm6]	G	T	5.995e^-4	0.985	INTRON drpr	TF binding site BDTNP1_TFBS_twi
3L	16918677	3L_16918677_SNP [dm3] 3L_16925577_SNP [dm6]	G	A	6.017e^-4	0.985	SYNONYMOUS_CODING CG13023	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8585280	2R_8585280_SNP [dm3] 2R_12697775_SNP [dm6]	G	C	6.041e^-4	0.985	INTERGENIC
2R	11696991	2R_11696991_SNP [dm3] 2R_15809486_SNP [dm6]	G	A	6.062e^-4	0.985	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1425926	3R_1425926_SNP [dm3] 3R_5600204_SNP [dm6]	C	T	6.066e^-4	0.985	UTR_5_PRIME kra UPSTREAM kra INTRON kra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	18605301	2L_18605301_SNP [dm3] 2L_18605301_SNP [dm6]	A	G	6.127e^-4	0.985	UPSTREAM CG31789 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7451158	3L_7451158_SNP [dm3] 3L_7458058_SNP [dm6]	G	A	6.152e^-4	0.985	INTRON ppk26
3L	1043134	3L_1043134_INS [dm3] 3L_1043134_INS [dm6]	A	AA	6.156e^-4	0.985	INTRON bab1
X	2290708	X_2290708_SNP [dm3] X_2396675_SNP [dm6]	T	G	6.177e^-4	0.985	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	9237376	2L_9237376_SNP [dm3] 2L_9237376_SNP [dm6]	C	T	6.192e^-4	0.985	UPSTREAM tRNA:CR31885 INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12625632	3L_12625632_SNP [dm3] 3L_12632532_SNP [dm6]	G	T	6.195e^-4	0.985	INTRON CR32111	TF binding site mE1_TFBS_cad
3L	12458553	3L_12458553_SNP [dm3] 3L_12465453_SNP [dm6]	A	G	6.211e^-4	0.985	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	12347233	3R_12347233_SNP [dm3] 3R_16521511_SNP [dm6]	C	T	6.238e^-4	0.985	INTRON CG42342
2R	20480631	2R_20480631_SNP [dm3] 2R_24593108_SNP [dm6]	T	C	6.258e^-4	0.985	DOWNSTREAM pio INTRON pio
2R	6932862	2R_6932862_INS [dm3] 2R_11045357_INS [dm6]	A	AATGAGAGTGCG...	6.282e^-4	0.985	INTRON luna
2R	13595272	2R_13595272_SNP [dm3] 2R_17707767_SNP [dm6]	C	T	6.289e^-4	0.985	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11988641	2R_11988641_SNP [dm3] 2R_16101136_SNP [dm6]	T	G	6.289e^-4	0.985	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2R	17722253	2R_17722253_SNP [dm3] 2R_21834748_SNP [dm6]	G	A	6.291e^-4	0.985	SYNONYMOUS_CODING CG4363 DOWNSTREAM CG4377
2L	14405699	2L_14405699_SNP [dm3] 2L_14405699_SNP [dm6]	G	A	6.292e^-4	0.985	INTRON elB	TF binding site mE1_TFBS_cad
2L	18667406	2L_18667406_SNP [dm3] 2L_18667406_SNP [dm6]	G	A	6.294e^-4	0.985	SYNONYMOUS_CODING CG43338 DOWNSTREAM CR42490	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2035771	3L_2035771_SNP [dm3] 3L_2035771_SNP [dm6]	T	C	6.310e^-4	0.985	INTERGENIC
X	14113630	X_14113630_SNP [dm3] X_14219597_SNP [dm6]	T	A	6.324e^-4	0.985	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl
3R	9487856	3R_9487856_SNP [dm3] 3R_13662134_SNP [dm6]	A	C	6.329e^-4	0.985	INTRON B52	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D
3R	9493176	3R_9493176_SNP [dm3] 3R_13667454_SNP [dm6]	A	T	6.329e^-4	0.985	UTR_3_PRIME Task6 DOWNSTREAM B52
3R	9494402	3R_9494402_SNP [dm3] 3R_13668680_SNP [dm6]	T	A	6.329e^-4	0.985	NON_SYNONYMOUS_CODING Task6
X	18723685	X_18723685_SNP [dm3] X_18829652_SNP [dm6]	T	C	6.329e^-4	0.985	UTR_3_PRIME CG42450 UPSTREAM CG7101	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	2724769	2L_2724769_SNP [dm3] 2L_2724769_SNP [dm6]	A	T	6.330e^-4	0.985	UPSTREAM CG31689 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2724778	2L_2724778_SNP [dm3] 2L_2724778_SNP [dm6]	C	T	6.330e^-4	0.985	UPSTREAM CG31689 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1906547	2L_1906547_DEL [dm3] 2L_1906547_DEL [dm6]	TTCG	T	6.346e^-4	0.985	INTRON CG7337
2L	996000	2L_996000_SNP [dm3] 2L_996000_SNP [dm6]	G	A	6.394e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18946111	3L_18946111_SNP [dm3] 3L_18953011_SNP [dm6]	T	A	6.403e^-4	0.985	INTRON CG6836
2R	9722001	2R_9722001_SNP [dm3] 2R_13834496_SNP [dm6]	G	A	6.409e^-4	0.985	SYNONYMOUS_CODING CG6337 DOWNSTREAM CG6329	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13841388	X_13841388_SNP [dm3] X_13947355_SNP [dm6]	C	T	6.410e^-4	0.985	UPSTREAM mamo INTRON mamo
3L	12085119	3L_12085119_SNP [dm3] 3L_12092019_SNP [dm6]	C	G	6.436e^-4	0.985	INTERGENIC
2L	2716753	2L_2716753_SNP [dm3] 2L_2716753_SNP [dm6]	G	T	6.443e^-4	0.985	INTRON CG31690
3L	8876580	3L_8876580_SNP [dm3] 3L_8883480_SNP [dm6]	G	A	6.455e^-4	0.985	INTRON dally
3L	11051960	3L_11051960_SNP [dm3] 3L_11058860_SNP [dm6]	T	A	6.496e^-4	0.985	SYNONYMOUS_CODING CG7888 DOWNSTREAM CG6321	TF binding site mE1_TFBS_cad
3L	15308686	3L_15308686_SNP [dm3] 3L_15315586_SNP [dm6]	G	A	6.501e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	11266644	2L_11266644_SNP [dm3] 2L_11266644_SNP [dm6]	T	A	6.519e^-4	0.985	INTRON cmet
X	14687474	X_14687474_SNP [dm3] X_14793441_SNP [dm6]	A	G	6.533e^-4	0.985	SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo
2R	17560593	2R_17560593_SNP [dm3] 2R_21673088_SNP [dm6]	C	T	6.558e^-4	0.985	DOWNSTREAM CG15676 INTERGENIC
3R	3900107	3R_3900107_SNP [dm3] 3R_8074385_SNP [dm6]	A	G	6.564e^-4	0.985	INTRON mAChR-B
2R	10230230	2R_10230230_SNP [dm3] 2R_14342725_SNP [dm6]	C	T	6.570e^-4	0.985	INTRON Shroom	TF binding site mE1_TFBS_HSA
2R	11988640	2R_11988640_SNP [dm3] 2R_16101135_SNP [dm6]	A	G	6.571e^-4	0.985	SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2R	11988646	2R_11988646_SNP [dm3] 2R_16101141_SNP [dm6]	C	A	6.571e^-4	0.985	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2R	7627290	2R_7627290_SNP [dm3] 2R_11739785_SNP [dm6]	G	A	6.572e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6312379	2L_6312379_SNP [dm3] 2L_6312379_SNP [dm6]	A	T	6.606e^-4	0.985	INTRON Ddr
2L	16555371	2L_16555371_SNP [dm3] 2L_16555371_SNP [dm6]	G	C	6.618e^-4	0.985	INTRON CG42389
3L	12625575	3L_12625575_SNP [dm3] 3L_12632475_SNP [dm6]	G	T	6.624e^-4	0.985	INTRON CR32111	TF binding site mE1_TFBS_cad
2L	11235845	2L_11235845_SNP [dm3] 2L_11235845_SNP [dm6]	T	C	6.648e^-4	0.985	SYNONYMOUS_CODING ab DOWNSTREAM snoRNA:Me18S-G642	TF binding site BDTNP1_TFBS_dl
3L	16623019	3L_16623019_SNP [dm3] 3L_16629919_SNP [dm6]	T	C	6.654e^-4	0.985	INTRON Abl
2L	15224192	2L_15224192_SNP [dm3] 2L_15224192_SNP [dm6]	A	C	6.661e^-4	0.985	INTERGENIC
2L	15224236	2L_15224236_SNP [dm3] 2L_15224236_SNP [dm6]	T	C	6.661e^-4	0.985	INTERGENIC
2L	18545186	2L_18545186_SNP [dm3] 2L_18545186_SNP [dm6]	C	T	6.666e^-4	0.985	INTRON Pde11
3L	6465537	3L_6465537_SNP [dm3] 3L_6472437_SNP [dm6]	G	A	6.670e^-4	0.985	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8605579	2R_8605579_SNP [dm3] 2R_12718074_SNP [dm6]	G	A	6.680e^-4	0.985	INTRON CG42663	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	10787549	X_10787549_SNP [dm3] X_10893516_SNP [dm6]	G	A	6.688e^-4	0.985	DOWNSTREAM CR45617 EXON CR44524
X	11274048	X_11274048_SNP [dm3] X_11380015_SNP [dm6]	T	C	6.701e^-4	0.985	INTRON dlg1
X	11205495	X_11205495_SNP [dm3] X_11311462_SNP [dm6]	A	G	6.722e^-4	0.985	UPSTREAM Ir10a INTERGENIC
2L	7259608	2L_7259608_SNP [dm3] 2L_7259608_SNP [dm6]	A	T	6.725e^-4	0.985	INTRON Wnt4
3R	25121924	3R_25121924_SNP [dm3] 3R_29296202_SNP [dm6]	G	A	6.737e^-4	0.985	NON_SYNONYMOUS_CODING CG14506
3L	13719475	3L_13719475_SNP [dm3] 3L_13726375_SNP [dm6]	G	A	6.772e^-4	0.985	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14405672	2L_14405672_SNP [dm3] 2L_14405672_SNP [dm6]	C	A	6.772e^-4	0.985	INTRON elB	TF binding site mE1_TFBS_cad
X	597523	X_597523_SNP [dm3] X_703490_SNP [dm6]	T	C	6.782e^-4	0.985	INTRON sdk
3R	22518224	3R_22518224_INS [dm3] 3R_26692502_INS [dm6]	C	CGT	6.783e^-4	0.985	DOWNSTREAM TwdlQ INTERGENIC
X	9421827	X_9421827_SNP [dm3] X_9527794_SNP [dm6]	A	G	6.790e^-4	0.985	INTRON CG32700
2R	20213448	2R_20213448_SNP [dm3] 2R_24325925_SNP [dm6]	C	T	6.796e^-4	0.985	INTRON CR44810
2L	8843468	2L_8843468_SNP [dm3] 2L_8843468_SNP [dm6]	G	A	6.824e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3R	7949110	3R_7949110_SNP [dm3] 3R_12123388_SNP [dm6]	A	T	6.826e^-4	0.985	INTRON CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	9358533	2L_9358533_SNP [dm3] 2L_9358533_SNP [dm6]	C	T	6.826e^-4	0.985	INTERGENIC
3L	3413185	3L_3413185_SNP [dm3] 3L_3413185_SNP [dm6]	C	T	6.835e^-4	0.985	UPSTREAM mir-2282 INTRON sty
3L	11051903	3L_11051903_SNP [dm3] 3L_11058803_SNP [dm6]	C	A	6.841e^-4	0.985	SYNONYMOUS_CODING CG7888 DOWNSTREAM CG6321	TF binding site mE1_TFBS_cad
2R	10617128	2R_10617128_SNP [dm3] 2R_14729623_SNP [dm6]	A	G	6.843e^-4	0.985	INTERGENIC
2R	8116780	2R_8116780_SNP [dm3] 2R_12229275_SNP [dm6]	C	T	6.864e^-4	0.985	UTR_5_PRIME CG8854
X	14087807	X_14087807_SNP [dm3] X_14193774_SNP [dm6]	C	T	6.865e^-4	0.985	INTRON yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
3L	1042993	3L_1042993_SNP [dm3] 3L_1042993_SNP [dm6]	C	G	6.870e^-4	0.985	INTRON bab1
2R	6102420	2R_6102420_SNP [dm3] 2R_10214915_SNP [dm6]	A	G	6.876e^-4	0.985	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13221715	2R_13221715_SNP [dm3] 2R_17334210_SNP [dm6]	G	A	6.884e^-4	0.985	INTRON mbl
X	2337675	X_2337675_SNP [dm3] X_2443642_SNP [dm6]	G	T	6.886e^-4	0.985	UTR_5_PRIME tko DOWNSTREAM boi INTRON tko	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	8967857	X_8967857_SNP [dm3] X_9073824_SNP [dm6]	A	G	6.886e^-4	0.985	INTRON CG44325	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	18910694	3L_18910694_SNP [dm3] 3L_18917594_SNP [dm6]	G	A	6.905e^-4	0.985	NON_SYNONYMOUS_CODING CG6839
2L	18603539	2L_18603539_SNP [dm3] 2L_18603539_SNP [dm6]	T	A	6.912e^-4	0.985	INTRON CG10413
2L	13710977	2L_13710977_SNP [dm3] 2L_13710977_SNP [dm6]	A	C	6.925e^-4	0.985	DOWNSTREAM CG7311 INTRON CG31814
3R	22846646	3R_22846646_SNP [dm3] 3R_27020924_SNP [dm6]	G	C	6.934e^-4	0.985	SYNONYMOUS_CODING CG6283 INTRON RYa-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22846682	3R_22846682_SNP [dm3] 3R_27020960_SNP [dm6]	G	A	6.934e^-4	0.985	SYNONYMOUS_CODING CG6283 INTRON RYa-R	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	8605577	2R_8605577_SNP [dm3] 2R_12718072_SNP [dm6]	T	C	6.938e^-4	0.985	INTRON CG42663	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	6530065	3L_6530065_SNP [dm3] 3L_6536965_SNP [dm6]	G	A	6.962e^-4	0.985	INTRON sfl
3L	6530084	3L_6530084_SNP [dm3] 3L_6536984_SNP [dm6]	A	T	6.962e^-4	0.985	INTRON sfl
2R	18396112	2R_18396112_SNP [dm3] 2R_22508607_SNP [dm6]	T	C	6.999e^-4	0.985	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12674376	3R_12674376_SNP [dm3] 3R_16848654_SNP [dm6]	G	A	7.001e^-4	0.985	INTRON iab-8 EXON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1753789	2L_1753789_SNP [dm3] 2L_1753789_SNP [dm6]	G	T	7.007e^-4	0.985	DOWNSTREAM CG17648 INTERGENIC
3L	16920532	3L_16920532_SNP [dm3] 3L_16927432_SNP [dm6]	G	A	7.018e^-4	0.985	UTR_5_PRIME CG13023 DOWNSTREAM CG11905
2R	12415563	2R_12415563_SNP [dm3] 2R_16528058_SNP [dm6]	A	T	7.032e^-4	0.985	INTRON Sema-2a
3L	15315244	3L_15315244_SNP [dm3] 3L_15322144_SNP [dm6]	A	C	7.046e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	10102708	2L_10102708_SNP [dm3] 2L_10102708_SNP [dm6]	T	A	7.056e^-4	0.985	INTRON CG44153 & 1 other
2R	18972325	2R_18972325_SNP [dm3] 2R_23084802_SNP [dm6]	T	A	7.059e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6530067	3L_6530067_SNP [dm3] 3L_6536967_SNP [dm6]	G	A	7.076e^-4	0.985	INTRON sfl
2R	1392361	2R_1392361_SNP [dm3] 2R_5504856_SNP [dm6]	G	T	7.076e^-4	0.985	INTRON CG30438 & 1 other
2L	6312359	2L_6312359_SNP [dm3] 2L_6312359_SNP [dm6]	T	C	7.090e^-4	0.985	INTRON Ddr
3L	16922759	3L_16922759_SNP [dm3] 3L_16929659_SNP [dm6]	G	A	7.122e^-4	0.985	SYNONYMOUS_CODING CG11905 DOWNSTREAM CG11905	TF binding site mE1_TFBS_chinmo
2L	4764704	2L_4764704_SNP [dm3] 2L_4764704_SNP [dm6]	G	A	7.123e^-4	0.985	DOWNSTREAM CG42523 INTRON CG15630
2L	16800257	2L_16800257_SNP [dm3] 2L_16800257_SNP [dm6]	C	T	7.125e^-4	0.985	SYNONYMOUS_CODING Ugt36Bc
2L	16747155	2L_16747155_SNP [dm3] 2L_16747155_SNP [dm6]	A	C	7.137e^-4	0.985	UTR_3_PRIME CG17912 INTRON CG17912	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16747156	2L_16747156_SNP [dm3] 2L_16747156_SNP [dm6]	C	T	7.137e^-4	0.985	UTR_3_PRIME CG17912 INTRON CG17912	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7544745	2L_7544745_SNP [dm3] 2L_7544745_SNP [dm6]	A	T	7.143e^-4	0.985	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	20421369	3R_20421369_DEL [dm3] 3R_24595647_DEL [dm6]	TT	T	7.149e^-4	0.985	INTRON mld	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21288214	3R_21288214_SNP [dm3] 3R_25462492_SNP [dm6]	G	C	7.156e^-4	0.985	INTRON Fur1
3R	7484381	3R_7484381_SNP [dm3] 3R_11658659_SNP [dm6]	G	A	7.157e^-4	0.985	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
2L	12606344	2L_12606344_SNP [dm3] 2L_12606344_SNP [dm6]	G	A	7.161e^-4	0.985	INTRON nub	TF binding site BDTNP1_TFBS_da
3R	13159724	3R_13159724_SNP [dm3] 3R_17334002_SNP [dm6]	T	C	7.173e^-4	0.985	INTRON beat-IIa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7451079	3L_7451079_SNP [dm3] 3L_7457979_SNP [dm6]	C	T	7.175e^-4	0.985	INTRON ppk26
2L	6389388	2L_6389388_SNP [dm3] 2L_6389388_SNP [dm6]	C	T	7.192e^-4	0.985	INTRON CG42368	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	3111430	3L_3111430_SNP [dm3] 3L_3111430_SNP [dm6]	C	T	7.193e^-4	0.985	NON_SYNONYMOUS_CODING CG45067 UPSTREAM CG45066
3L	12958092	3L_12958092_SNP [dm3] 3L_12964992_SNP [dm6]	G	A	7.199e^-4	0.985	SYNONYMOUS_CODING Or69a INTRON Or69a
2L	9650977	2L_9650977_SNP [dm3] 2L_9650977_SNP [dm6]	C	T	7.205e^-4	0.985	SYNONYMOUS_CODING Apoltp
2R	8605695	2R_8605695_SNP [dm3] 2R_12718190_SNP [dm6]	A	T	7.236e^-4	0.985	INTRON CG42663	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	18505274	2L_18505274_SNP [dm3] 2L_18505274_SNP [dm6]	A	T	7.243e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8741022	3L_8741022_SNP [dm3] 3L_8747922_SNP [dm6]	T	C	7.249e^-4	0.985	INTERGENIC
2L	14382524	2L_14382524_INS [dm3] 2L_14382524_INS [dm6]	T	TAGTA	7.252e^-4	0.985	INTERGENIC
2R	4759466	2R_4759466_SNP [dm3] 2R_8871961_SNP [dm6]	G	A	7.275e^-4	0.985	INTRON RyR
2R	6357830	2R_6357830_SNP [dm3] 2R_10470325_SNP [dm6]	G	A	7.330e^-4	0.985	DOWNSTREAM CG11777 INTRON whd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5788247	3L_5788247_SNP [dm3] 3L_5795147_SNP [dm6]	G	A	7.330e^-4	0.985	UPSTREAM Bre1 INTRON Tektin-C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21343887	X_21343887_SNP [dm3] X_21472860_SNP [dm6]	C	T	7.330e^-4	0.985	INTERGENIC
2R	11988600	2R_11988600_SNP [dm3] 2R_16101095_SNP [dm6]	T	A	7.342e^-4	0.985	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3L	6032706	3L_6032706_SNP [dm3] 3L_6039606_SNP [dm6]	G	A	7.343e^-4	0.985	NON_SYNONYMOUS_CODING Jon65Aiv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1412850	3L_1412850_SNP [dm3] 3L_1412850_SNP [dm6]	A	G	7.348e^-4	0.985	SYNONYMOUS_CODING CG9168 INTRON Ptp61F
2L	9122217	2L_9122217_SNP [dm3] 2L_9122217_SNP [dm6]	C	T	7.352e^-4	0.985	UPSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	7100532	2L_7100532_SNP [dm3] 2L_7100532_SNP [dm6]	A	G	7.360e^-4	0.985	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7100544	2L_7100544_SNP [dm3] 2L_7100544_SNP [dm6]	A	G	7.360e^-4	0.985	SYNONYMOUS_CODING Pvf3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6160688	2L_6160688_SNP [dm3] 2L_6160688_SNP [dm6]	A	C	7.369e^-4	0.985	NON_SYNONYMOUS_CODING CG13989	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	7467458	3L_7467458_SNP [dm3] 3L_7474358_SNP [dm6]	G	A	7.385e^-4	0.985	INTERGENIC
3L	1042781	3L_1042781_SNP [dm3] 3L_1042781_SNP [dm6]	T	C	7.385e^-4	0.985	INTRON bab1
3R	7490436	3R_7490436_SNP [dm3] 3R_11664714_SNP [dm6]	A	C	7.386e^-4	0.985	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10857303	X_10857303_SNP [dm3] X_10963270_SNP [dm6]	G	A	7.391e^-4	0.985	DOWNSTREAM C901 INTRON Myo10A
2R	17722308	2R_17722308_DEL [dm3] 2R_21834803_DEL [dm6]	TT	T	7.393e^-4	0.985	DOWNSTREAM CG4377 INTRON CG4363
3L	4956522	3L_4956522_SNP [dm3] 3L_4956522_SNP [dm6]	A	G	7.404e^-4	0.985	SYNONYMOUS_CODING Con
2L	3740863	2L_3740863_SNP [dm3] 2L_3740863_SNP [dm6]	C	A	7.406e^-4	0.985	INTRON CG10019
2L	7186495	2L_7186495_SNP [dm3] 2L_7186495_SNP [dm6]	A	T	7.441e^-4	0.985	SYNONYMOUS_CODING CG4496 DOWNSTREAM CG4495	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7200825	3L_7200825_DEL [dm3] 3L_7207725_DEL [dm6]	TACAAA	T	7.458e^-4	0.985	INTERGENIC
3L	7200833	3L_7200833_SNP [dm3] 3L_7207733_SNP [dm6]	C	G	7.458e^-4	0.985	INTERGENIC
2R	18995240	2R_18995240_SNP [dm3] 2R_23107717_SNP [dm6]	C	G	7.462e^-4	0.985	INTERGENIC
3L	3141088	3L_3141088_SNP [dm3] 3L_3141088_SNP [dm6]	T	C	7.465e^-4	0.985	INTRON CG11537	TF binding site mE1_TFBS_HSA
2L	860422	2L_860422_SNP [dm3] 2L_860422_SNP [dm6]	C	T	7.470e^-4	0.985	INTRON CG13950	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	860426	2L_860426_SNP [dm3] 2L_860426_SNP [dm6]	G	C	7.470e^-4	0.985	INTRON CG13950	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	4118339	2R_4118339_SNP [dm3] 2R_8230834_SNP [dm6]	G	T	7.475e^-4	0.985	DOWNSTREAM CR44275 INTRON dpn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2239509	3L_2239509_SNP [dm3] 3L_2239509_SNP [dm6]	G	C	7.477e^-4	0.985	SYNONYMOUS_CODING ACXD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	16421843	X_16421843_SNP [dm3] X_16527810_SNP [dm6]	G	T	7.477e^-4	0.985	UTR_5_PRIME para UPSTREAM para
X	11025328	X_11025328_SNP [dm3] X_11131295_SNP [dm6]	G	A	7.478e^-4	0.985	SYNONYMOUS_CODING Klp10A DOWNSTREAM CG44385	TF binding site mE1_TFBS_cad
3L	1390006	3L_1390006_SNP [dm3] 3L_1390006_SNP [dm6]	A	T	7.483e^-4	0.985	INTRON Ptp61F
3L	10702122	3L_10702122_SNP [dm3] 3L_10709022_SNP [dm6]	A	G	7.494e^-4	0.985	INTERGENIC
2L	6147546	2L_6147546_SNP [dm3] 2L_6147546_SNP [dm6]	C	T	7.495e^-4	0.985	INTERGENIC
2R	11988599	2R_11988599_SNP [dm3] 2R_16101094_SNP [dm6]	T	C	7.500e^-4	0.985	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2L	18597387	2L_18597387_SNP [dm3] 2L_18597387_SNP [dm6]	T	A	7.549e^-4	0.985	UPSTREAM amos INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8130532	2R_8130532_SNP [dm3] 2R_12243027_SNP [dm6]	C	T	7.552e^-4	0.985	DOWNSTREAM CG43244 INTRON CG43316
2R	8130660	2R_8130660_INS [dm3] 2R_12243155_INS [dm6]	C	CAACCTCATCGAC...	7.552e^-4	0.985	DOWNSTREAM CG43244
3L	3934390	3L_3934390_SNP [dm3] 3L_3934390_SNP [dm6]	C	G	7.553e^-4	0.985	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
2R	6816416	2R_6816416_DEL [dm3] 2R_10928911_DEL [dm6]	AA	A	7.572e^-4	0.985	INTERGENIC
X	14628581	X_14628581_SNP [dm3] X_14734548_SNP [dm6]	T	C	7.572e^-4	0.985	INTRON NetB
2L	20437153	2L_20437153_SNP [dm3] 2L_20437153_SNP [dm6]	C	G	7.603e^-4	0.985	DOWNSTREAM CR43607 INTRON CG31688	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14133750	X_14133750_SNP [dm3] X_14239717_SNP [dm6]	A	G	7.603e^-4	0.985	NON_SYNONYMOUS_CODING CG1434 DOWNSTREAM mRNA-cap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21687066	2L_21687066_SNP [dm3] 2L_21687066_SNP [dm6]	T	G	7.612e^-4	0.985	INTRON CG31619	transposable element FlyBase
2L	11936651	2L_11936651_SNP [dm3] 2L_11936651_SNP [dm6]	C	A	7.623e^-4	0.985	SYNONYMOUS_CODING Or33b DOWNSTREAM Or33a
3L	16044488	3L_16044488_SNP [dm3] 3L_16051388_SNP [dm6]	A	G	7.634e^-4	0.985	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_Trl mE1_TFBS_zfh1
2L	5473737	2L_5473737_SNP [dm3] 2L_5473737_SNP [dm6]	G	A	7.647e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	11929704	2L_11929704_SNP [dm3] 2L_11929704_SNP [dm6]	T	C	7.663e^-4	0.985	INTERGENIC
3L	7223042	3L_7223042_SNP [dm3] 3L_7229942_SNP [dm6]	A	T	7.671e^-4	0.985	INTERGENIC
2L	2724567	2L_2724567_SNP [dm3] 2L_2724567_SNP [dm6]	T	A	7.678e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	4458039	3L_4458039_SNP [dm3] 3L_4458039_SNP [dm6]	G	A	7.679e^-4	0.985	NON_SYNONYMOUS_CODING CG11345
3R	16701278	3R_16701278_SNP [dm3] 3R_20875556_SNP [dm6]	C	T	7.713e^-4	0.985	INTERGENIC
X	597759	X_597759_SNP [dm3] X_703726_SNP [dm6]	T	C	7.715e^-4	0.985	INTRON sdk
2L	10102728	2L_10102728_SNP [dm3] 2L_10102728_SNP [dm6]	A	G	7.717e^-4	0.985	INTRON CG44153 & 1 other
2L	7234090	2L_7234090_SNP [dm3] 2L_7234090_SNP [dm6]	G	A	7.735e^-4	0.985	INTRON Ndae1
2R	8136196	2R_8136196_SNP [dm3] 2R_12248691_SNP [dm6]	A	C	7.764e^-4	0.985	INTERGENIC
3R	12396962	3R_12396962_SNP [dm3] 3R_16571240_SNP [dm6]	C	T	7.775e^-4	0.985	UTR_3_PRIME CG42342 UPSTREAM CG14891	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12089578	2R_12089578_SNP [dm3] 2R_16202073_SNP [dm6]	A	G	7.776e^-4	0.985	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12089739	2R_12089739_SNP [dm3] 2R_16202234_SNP [dm6]	G	A	7.776e^-4	0.985	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12089865	2R_12089865_SNP [dm3] 2R_16202360_SNP [dm6]	C	A	7.776e^-4	0.985	SYNONYMOUS_CODING shark DOWNSTREAM mrj	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1901122	2R_1901122_SNP [dm3] 2R_6013617_SNP [dm6]	A	C	7.776e^-4	0.985	DOWNSTREAM Src42A & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17096481	3L_17096481_SNP [dm3] 3L_17103381_SNP [dm6]	G	A	7.779e^-4	0.985	INTRON Rbp6
3L	674614	3L_674614_SNP [dm3] 3L_674614_SNP [dm6]	A	C	7.783e^-4	0.985	INTERGENIC
3L	5182258	3L_5182258_SNP [dm3] 3L_5189158_SNP [dm6]	C	G	7.797e^-4	0.985	INTRON shep
X	558924	X_558924_INS [dm3] X_664891_INS [dm6]	T	TTT	7.818e^-4	0.985	INTERGENIC
X	6962395	X_6962395_SNP [dm3] X_7068362_SNP [dm6]	T	G	7.825e^-4	0.985	INTERGENIC
3R	15541484	3R_15541484_SNP [dm3] 3R_19715762_SNP [dm6]	G	A	7.826e^-4	0.985	SYNONYMOUS_CODING CG34286
2R	6150510	2R_6150510_SNP [dm3] 2R_10263005_SNP [dm6]	A	G	7.830e^-4	0.985	EXON CR30009
3R	16590300	3R_16590300_DEL [dm3] 3R_20764578_DEL [dm6]	GG	G	7.838e^-4	0.985	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1687828	3L_1687828_SNP [dm3] 3L_1687828_SNP [dm6]	G	T	7.863e^-4	0.985	UPSTREAM CG7991 INTRON CG7991
3L	1687829	3L_1687829_SNP [dm3] 3L_1687829_SNP [dm6]	A	T	7.863e^-4	0.985	UPSTREAM CG7991 INTRON CG7991
3L	10942243	3L_10942243_SNP [dm3] 3L_10949143_SNP [dm6]	T	G	7.882e^-4	0.985	INTERGENIC
3L	15503983	3L_15503983_INS [dm3] 3L_15510883_INS [dm6]	G	GAG	7.883e^-4	0.985	UTR_3_PRIME gdl UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5852482	3L_5852482_SNP [dm3] 3L_5859382_SNP [dm6]	C	T	7.885e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	11426266	3R_11426266_SNP [dm3] 3R_15600544_SNP [dm6]	A	G	7.900e^-4	0.985	INTERGENIC
X	13429609	X_13429609_SNP [dm3] X_13535576_SNP [dm6]	T	G	7.905e^-4	0.985	INTRON CG15756
3L	15936965	3L_15936965_SNP [dm3] 3L_15943865_SNP [dm6]	C	G	7.927e^-4	0.985	INTRON Pka-C3
3L	15943688	3L_15943688_SNP [dm3] 3L_15950588_SNP [dm6]	C	T	7.927e^-4	0.985	INTRON Pka-C3
3L	4054818	3L_4054818_SNP [dm3] 3L_4054818_SNP [dm6]	A	G	7.954e^-4	0.985	INTRON CG1136
3R	5359690	3R_5359690_SNP [dm3] 3R_9533968_SNP [dm6]	T	A	7.954e^-4	0.985	UPSTREAM by INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	5371137	3R_5371137_SNP [dm3] 3R_9545415_SNP [dm6]	C	A	7.954e^-4	0.985	INTRON mura	TF binding site mE1_TFBS_HSA
3R	5371138	3R_5371138_SNP [dm3] 3R_9545416_SNP [dm6]	T	A	7.954e^-4	0.985	INTRON mura	TF binding site mE1_TFBS_HSA
3R	5388500	3R_5388500_SNP [dm3] 3R_9562778_SNP [dm6]	T	C	7.954e^-4	0.985	INTRON CG9393	TF binding site mE1_TFBS_inv
X	10787410	X_10787410_SNP [dm3] X_10893377_SNP [dm6]	A	T	7.954e^-4	0.985	DOWNSTREAM CR45617 EXON CR44524
X	10787418	X_10787418_SNP [dm3] X_10893385_SNP [dm6]	A	T	7.954e^-4	0.985	DOWNSTREAM CR45617 EXON CR44524
X	10787484	X_10787484_DEL [dm3] X_10893451_DEL [dm6]	ATAATGTT	A	7.954e^-4	0.985	DOWNSTREAM CR45617 INTRON CR44524
X	14820553	X_14820553_SNP [dm3] X_14926520_SNP [dm6]	C	T	7.954e^-4	0.985	UTR_5_PRIME Flo2 DOWNSTREAM CG32591 INTRON Flo2
X	14820582	X_14820582_SNP [dm3] X_14926549_SNP [dm6]	T	A	7.954e^-4	0.985	START_GAINED Flo2 UTR_5_PRIME Flo2 DOWNSTREAM CG32591 INTRON Flo2
X	14820583	X_14820583_INS [dm3] X_14926550_INS [dm6]	T	TAT	7.954e^-4	0.985	UTR_5_PRIME Flo2 DOWNSTREAM CG32591 INTRON Flo2
X	14630840	X_14630840_SNP [dm3] X_14736807_SNP [dm6]	G	A	7.958e^-4	0.985	INTRON NetB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14681988	3L_14681988_SNP [dm3] 3L_14688888_SNP [dm6]	A	C	7.960e^-4	0.985	INTRON ome
2L	14478451	2L_14478451_SNP [dm3] 2L_14478451_SNP [dm6]	C	G	7.982e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	18356721	3L_18356721_SNP [dm3] 3L_18363621_SNP [dm6]	A	C	8.036e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16390267	2L_16390267_SNP [dm3] 2L_16390267_SNP [dm6]	A	C	8.040e^-4	0.985	INTERGENIC
3L	5246992	3L_5246992_SNP [dm3] 3L_5253892_SNP [dm6]	C	A	8.041e^-4	0.985	INTRON shep
3R	15822275	3R_15822275_SNP [dm3] 3R_19996553_SNP [dm6]	T	A	8.052e^-4	0.985	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12932345	3L_12932345_SNP [dm3] 3L_12939245_SNP [dm6]	G	A	8.062e^-4	0.985	INTERGENIC
3R	8648512	3R_8648512_SNP [dm3] 3R_12822790_SNP [dm6]	A	G	8.062e^-4	0.985	INTERGENIC
3R	8650562	3R_8650562_INS [dm3] 3R_12824840_INS [dm6]	G	AGTGAGTTGTGAGTTCC...	8.062e^-4	0.985	INTERGENIC
3R	8656247	3R_8656247_SNP [dm3] 3R_12830525_SNP [dm6]	C	T	8.062e^-4	0.985	INTERGENIC
3R	8661129	3R_8661129_SNP [dm3] 3R_12835407_SNP [dm6]	A	T	8.062e^-4	0.985	INTERGENIC
3R	8661180	3R_8661180_SNP [dm3] 3R_12835458_SNP [dm6]	G	A	8.062e^-4	0.985	INTERGENIC
3R	8661302	3R_8661302_SNP [dm3] 3R_12835580_SNP [dm6]	T	C	8.062e^-4	0.985	INTERGENIC
3R	8661932	3R_8661932_SNP [dm3] 3R_12836210_SNP [dm6]	G	A	8.062e^-4	0.985	INTERGENIC
3R	8661943	3R_8661943_SNP [dm3] 3R_12836221_SNP [dm6]	T	A	8.062e^-4	0.985	INTERGENIC
3R	8664382	3R_8664382_SNP [dm3] 3R_12838660_SNP [dm6]	T	A	8.062e^-4	0.985	INTERGENIC
3R	8671106	3R_8671106_SNP [dm3] 3R_12845384_SNP [dm6]	T	A	8.062e^-4	0.985	INTRON beat-Va
3R	8675403	3R_8675403_SNP [dm3] 3R_12849681_SNP [dm6]	A	G	8.062e^-4	0.985	UPSTREAM CR45587 DOWNSTREAM CR44234 INTERGENIC
3R	8684006	3R_8684006_DEL [dm3] 3R_12858284_DEL [dm6]	CTGGCCAAAT	C	8.062e^-4	0.985	UPSTREAM CG10126 INTRON CG10126
3R	8706304	3R_8706304_SNP [dm3] 3R_12880582_SNP [dm6]	A	G	8.062e^-4	0.985	INTERGENIC
3R	8706446	3R_8706446_SNP [dm3] 3R_12880724_SNP [dm6]	T	C	8.062e^-4	0.985	INTERGENIC
3R	8706474	3R_8706474_SNP [dm3] 3R_12880752_SNP [dm6]	C	T	8.062e^-4	0.985	INTERGENIC
3R	8706616	3R_8706616_SNP [dm3] 3R_12880894_SNP [dm6]	T	C	8.062e^-4	0.985	INTERGENIC
3R	8709380	3R_8709380_SNP [dm3] 3R_12883658_SNP [dm6]	A	T	8.062e^-4	0.985	INTERGENIC
3R	8713544	3R_8713544_SNP [dm3] 3R_12887822_SNP [dm6]	C	G	8.062e^-4	0.985	INTERGENIC
3R	8714859	3R_8714859_SNP [dm3] 3R_12889137_SNP [dm6]	C	A	8.062e^-4	0.985	INTERGENIC
3R	8813765	3R_8813765_SNP [dm3] 3R_12988043_SNP [dm6]	T	A	8.062e^-4	0.985	NON_SYNONYMOUS_CODING CG14383 INTRON CG31342	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8833342	3R_8833342_SNP [dm3] 3R_13007620_SNP [dm6]	G	A	8.062e^-4	0.985	NON_SYNONYMOUS_CODING CG7518 SYNONYMOUS_CODING CG7518 DOWNSTREAM CG8031 & 1 other	TF binding site mE1_TFBS_cad
3R	8843342	3R_8843342_SNP [dm3] 3R_13017620_SNP [dm6]	C	T	8.062e^-4	0.985	INTRON CtBP	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	16470062	2L_16470062_SNP [dm3] 2L_16470062_SNP [dm6]	T	C	8.071e^-4	0.985	INTRON dac	regulatory region REDfly_CRMs
3L	5344945	3L_5344945_SNP [dm3] 3L_5351845_SNP [dm6]	A	T	8.101e^-4	0.985	UPSTREAM lama INTRON lama	TF binding site mE1_TFBS_HSA
2R	19592952	2R_19592952_SNP [dm3] 2R_23705429_SNP [dm6]	A	C	8.108e^-4	0.985	DOWNSTREAM l_2_not & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18596661	2L_18596661_SNP [dm3] 2L_18596661_SNP [dm6]	A	G	8.162e^-4	0.985	SYNONYMOUS_CODING amos	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18596662	2L_18596662_SNP [dm3] 2L_18596662_SNP [dm6]	A	T	8.162e^-4	0.985	NON_SYNONYMOUS_CODING amos	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10787558	X_10787558_SNP [dm3] X_10893525_SNP [dm6]	C	T	8.163e^-4	0.985	DOWNSTREAM CR45617 EXON CR44524
X	10945370	X_10945370_INS [dm3] X_11051337_INS [dm6]	A	AA	8.164e^-4	0.985	DOWNSTREAM CG1552 INTERGENIC
X	10945389	X_10945389_DEL [dm3] X_11051356_DEL [dm6]	GTCTTTGGATTTTATATTAT...	G	8.164e^-4	0.985	DOWNSTREAM CG1552 INTERGENIC
X	11055288	X_11055288_SNP [dm3] X_11161255_SNP [dm6]	A	C	8.188e^-4	0.985	SPLICE_SITE_REGION Dlic INTRON Dlic
2L	2820793	2L_2820793_SNP [dm3] 2L_2820793_SNP [dm6]	A	G	8.190e^-4	0.985	SYNONYMOUS_CODING Duox	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5245082	3L_5245082_SNP [dm3] 3L_5251982_SNP [dm6]	A	T	8.211e^-4	0.985	INTRON shep
3L	10733089	3L_10733089_INS [dm3] 3L_10739989_INS [dm6]	G	GG	8.218e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	16183755	2L_16183755_SNP [dm3] 2L_16183755_SNP [dm6]	T	A	8.223e^-4	0.985	INTRON Ca-alpha1D
X	781781	X_781781_SNP [dm3] X_887748_SNP [dm6]	G	A	8.225e^-4	0.985	INTRON CG43867
X	782333	X_782333_SNP [dm3] X_888300_SNP [dm6]	C	T	8.225e^-4	0.985	INTRON CG43867
X	782403	X_782403_SNP [dm3] X_888370_SNP [dm6]	A	G	8.225e^-4	0.985	INTRON CG43867
X	782942	X_782942_SNP [dm3] X_888909_SNP [dm6]	T	C	8.225e^-4	0.985	INTRON CG43867
X	782947	X_782947_SNP [dm3] X_888914_SNP [dm6]	A	C	8.225e^-4	0.985	INTRON CG43867
X	782967	X_782967_SNP [dm3] X_888934_SNP [dm6]	G	A	8.225e^-4	0.985	INTRON CG43867
X	782979	X_782979_SNP [dm3] X_888946_SNP [dm6]	A	T	8.225e^-4	0.985	INTRON CG43867
X	783000	X_783000_INS [dm3] X_888967_INS [dm6]	T	TTTTCACAAAATAT...	8.225e^-4	0.985	INTRON CG43867
X	783010	X_783010_SNP [dm3] X_888977_SNP [dm6]	T	G	8.225e^-4	0.985	INTRON CG43867
X	783014	X_783014_SNP [dm3] X_888981_SNP [dm6]	T	C	8.225e^-4	0.985	INTRON CG43867
X	783018	X_783018_SNP [dm3] X_888985_SNP [dm6]	T	G	8.225e^-4	0.985	INTRON CG43867
X	783025	X_783025_SNP [dm3] X_888992_SNP [dm6]	A	C	8.225e^-4	0.985	INTRON CG43867
X	783073	X_783073_DEL [dm3] X_889040_DEL [dm6]	AA	A	8.225e^-4	0.985	INTRON CG43867
X	783089	X_783089_SNP [dm3] X_889056_SNP [dm6]	G	A	8.225e^-4	0.985	INTRON CG43867
X	783091	X_783091_SNP [dm3] X_889058_SNP [dm6]	A	G	8.225e^-4	0.985	INTRON CG43867
X	783100	X_783100_SNP [dm3] X_889067_SNP [dm6]	C	A	8.225e^-4	0.985	INTRON CG43867
X	783432	X_783432_SNP [dm3] X_889399_SNP [dm6]	A	G	8.225e^-4	0.985	INTRON CG43867
X	783443	X_783443_SNP [dm3] X_889410_SNP [dm6]	A	C	8.225e^-4	0.985	INTRON CG43867
X	783708	X_783708_SNP [dm3] X_889675_SNP [dm6]	T	A	8.225e^-4	0.985	INTRON CG43867
X	783712	X_783712_SNP [dm3] X_889679_SNP [dm6]	T	G	8.225e^-4	0.985	INTRON CG43867
X	783915	X_783915_SNP [dm3] X_889882_SNP [dm6]	C	G	8.225e^-4	0.985	INTRON CG43867
X	783924	X_783924_SNP [dm3] X_889891_SNP [dm6]	C	A	8.225e^-4	0.985	INTRON CG43867
X	784014	X_784014_SNP [dm3] X_889981_SNP [dm6]	C	G	8.225e^-4	0.985	INTRON CG43867
X	784205	X_784205_SNP [dm3] X_890172_SNP [dm6]	T	G	8.225e^-4	0.985	INTRON CG43867
X	786909	X_786909_SNP [dm3] X_892876_SNP [dm6]	C	T	8.225e^-4	0.985	INTRON CG43867
3L	3260652	3L_3260652_SNP [dm3] 3L_3260652_SNP [dm6]	T	A	8.229e^-4	0.985	INTRON ckd
3L	5246322	3L_5246322_SNP [dm3] 3L_5253222_SNP [dm6]	A	G	8.243e^-4	0.985	INTRON shep
3L	12318088	3L_12318088_SNP [dm3] 3L_12324988_SNP [dm6]	T	A	8.245e^-4	0.985	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20078003	2R_20078003_SNP [dm3] 2R_24190480_SNP [dm6]	A	C	8.266e^-4	0.985	NON_SYNONYMOUS_CODING ocm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	6727002	X_6727002_SNP [dm3] X_6832969_SNP [dm6]	C	T	8.274e^-4	0.985	UPSTREAM CG12796 INTRON nonC	TF binding site mE1_TFBS_cad
2L	7015600	2L_7015600_SNP [dm3] 2L_7015600_SNP [dm6]	G	A	8.276e^-4	0.985	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM CG43322	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12675346	3R_12675346_SNP [dm3] 3R_16849624_SNP [dm6]	T	A	8.278e^-4	0.985	UPSTREAM iab-8 & 1 other INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12613545	2L_12613545_SNP [dm3] 2L_12613545_SNP [dm6]	G	T	8.279e^-4	0.985	INTRON nub & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Kr mE1_TFBS_Trl
3L	13336622	3L_13336622_SNP [dm3] 3L_13343522_SNP [dm6]	G	T	8.295e^-4	0.985	DOWNSTREAM CR44559 INTERGENIC
2R	2895304	2R_2895304_SNP [dm3] 2R_7007799_SNP [dm6]	G	A	8.327e^-4	0.985	NON_SYNONYMOUS_CODING Tsp42Ec	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16686362	2R_16686362_SNP [dm3] 2R_20798857_SNP [dm6]	A	G	8.353e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17295612	2R_17295612_SNP [dm3] 2R_21408107_SNP [dm6]	A	T	8.362e^-4	0.985	INTRON Sdc
2L	9456977	2L_9456977_SNP [dm3] 2L_9456977_SNP [dm6]	T	G	8.362e^-4	0.985	INTRON numb	regulatory region REDfly_CRMs
3L	15936753	3L_15936753_SNP [dm3] 3L_15943653_SNP [dm6]	G	A	8.371e^-4	0.985	INTRON Pka-C3
X	9421823	X_9421823_SNP [dm3] X_9527790_SNP [dm6]	G	C	8.391e^-4	0.985	INTRON CG32700
2R	10480527	2R_10480527_SNP [dm3] 2R_14593022_SNP [dm6]	C	A	8.395e^-4	0.985	SYNONYMOUS_CODING CG12869	TF binding site mE1_TFBS_cad
3L	13092705	3L_13092705_SNP [dm3] 3L_13099605_SNP [dm6]	C	T	8.395e^-4	0.985	INTERGENIC
3R	12996417	3R_12996417_SNP [dm3] 3R_17170695_SNP [dm6]	G	T	8.400e^-4	0.985	INTRON Mur89F
3R	10297719	3R_10297719_SNP [dm3] 3R_14471997_SNP [dm6]	C	A	8.408e^-4	0.985	INTRON cv-c
2L	6555384	2L_6555384_SNP [dm3] 2L_6555384_SNP [dm6]	A	T	8.409e^-4	0.985	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15111363	2L_15111363_SNP [dm3] 2L_15111363_SNP [dm6]	T	A	8.410e^-4	0.985	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3807845	3L_3807845_SNP [dm3] 3L_3807845_SNP [dm6]	C	A	8.419e^-4	0.985	SYNONYMOUS_CODING IntS10	TF binding site mE1_TFBS_sens
3L	3141099	3L_3141099_SNP [dm3] 3L_3141099_SNP [dm6]	A	G	8.440e^-4	0.985	INTRON CG11537	TF binding site mE1_TFBS_HSA
3R	22594691	3R_22594691_SNP [dm3] 3R_26768969_SNP [dm6]	C	T	8.442e^-4	0.985	UPSTREAM CR45563 INTERGENIC
2R	11512505	2R_11512505_SNP [dm3] 2R_15625000_SNP [dm6]	C	T	8.463e^-4	0.985	INTRON CG42524
X	20273188	X_20273188_SNP [dm3] X_20402161_SNP [dm6]	G	A	8.463e^-4	0.985	NON_SYNONYMOUS_CODING HERC2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3550698	3R_3550698_SNP [dm3] 3R_7724976_SNP [dm6]	T	C	8.470e^-4	0.985	DOWNSTREAM CG2616 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10352869	2R_10352869_SNP [dm3] 2R_14465364_SNP [dm6]	T	G	8.499e^-4	0.985	UTR_3_PRIME Oaz
2L	13743189	2L_13743189_SNP [dm3] 2L_13743189_SNP [dm6]	A	C	8.514e^-4	0.985	INTERGENIC
2L	13743190	2L_13743190_SNP [dm3] 2L_13743190_SNP [dm6]	A	C	8.514e^-4	0.985	INTERGENIC
2R	13320915	2R_13320915_SNP [dm3] 2R_17433410_SNP [dm6]	C	T	8.531e^-4	0.985	INTRON EDTP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13321512	2R_13321512_SNP [dm3] 2R_17434007_SNP [dm6]	G	A	8.531e^-4	0.985	SYNONYMOUS_CODING EDTP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2724411	2L_2724411_SNP [dm3] 2L_2724411_SNP [dm6]	T	A	8.537e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	12821152	2R_12821152_SNP [dm3] 2R_16933647_SNP [dm6]	C	T	8.537e^-4	0.985	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
2R	12821196	2R_12821196_SNP [dm3] 2R_16933691_SNP [dm6]	A	T	8.537e^-4	0.985	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3L	15731996	3L_15731996_SNP [dm3] 3L_15738896_SNP [dm6]	G	T	8.545e^-4	0.985	INTERGENIC
3R	10188545	3R_10188545_SNP [dm3] 3R_14362823_SNP [dm6]	G	C	8.557e^-4	0.985	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11480925	2L_11480925_SNP [dm3] 2L_11480925_SNP [dm6]	G	T	8.574e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8740798	3L_8740798_SNP [dm3] 3L_8747698_SNP [dm6]	T	C	8.577e^-4	0.985	INTERGENIC
3L	8740800	3L_8740800_SNP [dm3] 3L_8747700_SNP [dm6]	C	T	8.577e^-4	0.985	INTERGENIC
2L	20294354	2L_20294354_DEL [dm3] 2L_20294354_DEL [dm6]	TGTTTGTTTTCTAACTTATA...	T	8.626e^-4	0.985	UPSTREAM CG12617 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	8213683	2R_8213683_SNP [dm3] 2R_12326178_SNP [dm6]	G	T	8.634e^-4	0.985	UTR_5_PRIME CG8841 UPSTREAM garz & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	25209934	3R_25209934_SNP [dm3] 3R_29384212_SNP [dm6]	A	C	8.650e^-4	0.985	INTRON Ptp99A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	7978852	3R_7978852_DEL [dm3] 3R_12153130_DEL [dm6]	AA	A	8.681e^-4	0.985	INTRON dpr15
2L	5562906	2L_5562906_SNP [dm3] 2L_5562906_SNP [dm6]	C	T	8.687e^-4	0.985	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
3L	14216956	3L_14216956_SNP [dm3] 3L_14223856_SNP [dm6]	A	G	8.689e^-4	0.985	INTRON nuf
3L	14216958	3L_14216958_SNP [dm3] 3L_14223858_SNP [dm6]	T	G	8.689e^-4	0.985	INTRON nuf
3L	11739653	3L_11739653_SNP [dm3] 3L_11746553_SNP [dm6]	T	A	8.695e^-4	0.985	INTRON CG6024
2R	12071063	2R_12071063_SNP [dm3] 2R_16183558_SNP [dm6]	G	C	8.700e^-4	0.985	INTRON Lis-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12071077	2R_12071077_SNP [dm3] 2R_16183572_SNP [dm6]	T	C	8.700e^-4	0.985	INTRON Lis-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16590171	3R_16590171_SNP [dm3] 3R_20764449_SNP [dm6]	C	T	8.708e^-4	0.985	INTRON Syp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12637716	X_12637716_INS [dm3] X_12743683_INS [dm6]	A	AA	8.731e^-4	0.985	UPSTREAM CG4004 DOWNSTREAM CR45623 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	1287337	3L_1287337_SNP [dm3] 3L_1287337_SNP [dm6]	G	C	8.841e^-4	0.985	INTRON CG32333
3L	8944459	3L_8944459_SNP [dm3] 3L_8951359_SNP [dm6]	A	T	8.841e^-4	0.985	INTRON orb2 & 1 other
X	2553643	X_2553643_SNP [dm3] X_2659610_SNP [dm6]	G	A	8.841e^-4	0.985	SYNONYMOUS_CODING sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7324643	2L_7324643_SNP [dm3] 2L_7324643_SNP [dm6]	C	G	8.843e^-4	0.985	INTERGENIC
2R	8136227	2R_8136227_SNP [dm3] 2R_12248722_SNP [dm6]	A	G	8.890e^-4	0.985	INTERGENIC
2L	6124982	2L_6124982_SNP [dm3] 2L_6124982_SNP [dm6]	G	A	8.910e^-4	0.985	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	6124985	2L_6124985_SNP [dm3] 2L_6124985_SNP [dm6]	T	G	8.910e^-4	0.985	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	6124987	2L_6124987_SNP [dm3] 2L_6124987_SNP [dm6]	A	C	8.910e^-4	0.985	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	6124988	2L_6124988_SNP [dm3] 2L_6124988_SNP [dm6]	A	G	8.910e^-4	0.985	UPSTREAM Arpc4 DOWNSTREAM stai & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	6530093	3L_6530093_SNP [dm3] 3L_6536993_SNP [dm6]	T	C	8.921e^-4	0.985	INTRON sfl
3L	1043071	3L_1043071_SNP [dm3] 3L_1043071_SNP [dm6]	G	A	8.921e^-4	0.985	INTRON bab1
3L	1043090	3L_1043090_MNP [dm3] 3L_1043090_MNP [dm6]	CAT	TGC	8.921e^-4	0.985	INTRON bab1
X	6127560	X_6127560_SNP [dm3] X_6233527_SNP [dm6]	C	T	8.928e^-4	0.985	UTR_3_PRIME CG14446 DOWNSTREAM CG14446
2L	2728017	2L_2728017_SNP [dm3] 2L_2728017_SNP [dm6]	G	A	8.931e^-4	0.985	INTRON CG31689
3R	1885192	3R_1885192_SNP [dm3] 3R_6059470_SNP [dm6]	C	G	8.934e^-4	0.985	INTERGENIC	TF binding site mE1_TFBS_inv
3R	7821109	3R_7821109_SNP [dm3] 3R_11995387_SNP [dm6]	A	C	8.937e^-4	0.985	SYNONYMOUS_CODING Tk	TF binding site mE1_TFBS_chinmo
3L	5244819	3L_5244819_SNP [dm3] 3L_5251719_SNP [dm6]	G	A	8.938e^-4	0.985	INTRON shep	TF binding site mE1_TFBS_inv
3L	9275627	3L_9275627_SNP [dm3] 3L_9282527_SNP [dm6]	A	G	8.940e^-4	0.985	INTRON GluRIB
2R	14943227	2R_14943227_SNP [dm3] 2R_19055722_SNP [dm6]	A	G	8.960e^-4	0.985	SYNONYMOUS_CODING CG15116
2R	13518081	2R_13518081_DEL [dm3] 2R_17630576_DEL [dm6]	GG	G	8.980e^-4	0.985	INTRON CG10936 & 1 other
X	5926169	X_5926169_SNP [dm3] X_6032136_SNP [dm6]	T	G	8.983e^-4	0.985	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_sens
2R	17395736	2R_17395736_SNP [dm3] 2R_21508231_SNP [dm6]	C	T	8.987e^-4	0.985	INTRON MESK2
X	3804807	X_3804807_SNP [dm3] X_3910774_SNP [dm6]	A	G	8.993e^-4	0.985	NON_SYNONYMOUS_CODING CG42541 SPLICE_SITE_REGION CG42541 INTRON CG42541	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4913061	3L_4913061_SNP [dm3] 3L_4913061_SNP [dm6]	C	A	9.017e^-4	0.985	INTRON Rh50
3L	14485759	3L_14485759_SNP [dm3] 3L_14492659_SNP [dm6]	T	G	9.030e^-4	0.985	INTRON bbg	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	8087001	3R_8087001_SNP [dm3] 3R_12261279_SNP [dm6]	T	C	9.034e^-4	0.985	DOWNSTREAM CG44038 INTRON CG44037 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	11501124	3R_11501124_SNP [dm3] 3R_15675402_SNP [dm6]	C	G	9.040e^-4	0.985	INTRON pxb
X	20746466	X_20746466_SNP [dm3] X_20875439_SNP [dm6]	T	G	9.041e^-4	0.985	DOWNSTREAM CR11235 INTRON shakB
3R	13130089	3R_13130089_SNP [dm3] 3R_17304367_SNP [dm6]	T	C	9.044e^-4	0.985	INTERGENIC
2L	14478446	2L_14478446_DEL [dm3] 2L_14478446_DEL [dm6]	AA	T	9.048e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10332454	2R_10332454_SNP [dm3] 2R_14444949_SNP [dm6]	T	G	9.057e^-4	0.985	INTRON Oaz
3L	22935410	3L_22935410_SNP [dm3] 3L_22942310_SNP [dm6]	C	A	9.059e^-4	0.985	INTERGENIC
3L	9829121	3L_9829121_SNP [dm3] 3L_9836021_SNP [dm6]	A	C	9.088e^-4	0.985	INTRON I-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9829137	3L_9829137_SNP [dm3] 3L_9836037_SNP [dm6]	C	T	9.088e^-4	0.985	INTRON I-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11839210	2R_11839210_DEL [dm3] 2R_15951705_DEL [dm6]	AAAATCGATTTGAAAAGCTA...	C	9.109e^-4	0.985	UTR_3_PRIME Strn-Mlck UPSTREAM Strn-Mlck INTRON Strn-Mlck
3L	16912556	3L_16912556_SNP [dm3] 3L_16919456_SNP [dm6]	T	A	9.112e^-4	0.985	INTRON Lmpt
3R	25216349	3R_25216349_SNP [dm3] 3R_29390627_SNP [dm6]	C	T	9.124e^-4	0.985	INTRON Ptp99A
2R	11988594	2R_11988594_SNP [dm3] 2R_16101089_SNP [dm6]	G	C	9.127e^-4	0.985	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3L	16922407	3L_16922407_SNP [dm3] 3L_16929307_SNP [dm6]	T	G	9.150e^-4	0.985	NON_SYNONYMOUS_CODING CG11905 DOWNSTREAM CG11905	TF binding site mE1_TFBS_chinmo
2R	20516103	2R_20516103_SNP [dm3] 2R_24628580_SNP [dm6]	C	G	9.182e^-4	0.985	DOWNSTREAM snoRNA:Me18S-G393 INTRON CG13594
3R	15822244	3R_15822244_DEL [dm3] 3R_19996522_DEL [dm6]	AC	A	9.189e^-4	0.985	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22506933	3R_22506933_SNP [dm3] 3R_26681211_SNP [dm6]	C	A	9.213e^-4	0.985	INTRON beat-VII
2R	8917138	2R_8917138_SNP [dm3] 2R_13029633_SNP [dm6]	G	A	9.217e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22574753	3R_22574753_SNP [dm3] 3R_26749031_SNP [dm6]	T	C	9.219e^-4	0.985	INTERGENIC
3L	12853075	3L_12853075_SNP [dm3] 3L_12859975_SNP [dm6]	A	G	9.227e^-4	0.985	SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
2R	17719836	2R_17719836_DEL [dm3] 2R_21832331_DEL [dm6]	TAACCC	T	9.228e^-4	0.985	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
2R	17719851	2R_17719851_SNP [dm3] 2R_21832346_SNP [dm6]	C	T	9.228e^-4	0.985	UPSTREAM CG13492 DOWNSTREAM CG34040 INTERGENIC
2L	11976124	2L_11976124_SNP [dm3] 2L_11976124_SNP [dm6]	G	T	9.235e^-4	0.985	INTERGENIC
2L	15467647	2L_15467647_SNP [dm3] 2L_15467647_SNP [dm6]	A	C	9.239e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19794410	X_19794410_SNP [dm3] X_19900377_SNP [dm6]	G	A	9.241e^-4	0.985	INTRON Hers	TF binding site BDTNP1_TFBS_dl
X	19794458	X_19794458_SNP [dm3] X_19900425_SNP [dm6]	A	C	9.241e^-4	0.985	INTRON Hers	TF binding site BDTNP1_TFBS_dl
2R	11695699	2R_11695699_SNP [dm3] 2R_15808194_SNP [dm6]	A	T	9.242e^-4	0.985	INTRON tun & 1 other
2L	16183739	2L_16183739_SNP [dm3] 2L_16183739_SNP [dm6]	A	T	9.252e^-4	0.985	INTRON Ca-alpha1D
2L	16183754	2L_16183754_SNP [dm3] 2L_16183754_SNP [dm6]	A	T	9.252e^-4	0.985	INTRON Ca-alpha1D
2L	7187208	2L_7187208_SNP [dm3] 2L_7187208_SNP [dm6]	T	A	9.261e^-4	0.985	SYNONYMOUS_CODING CG4496	TF binding site mE1_TFBS_HSA
3L	954701	3L_954701_SNP [dm3] 3L_954701_SNP [dm6]	C	A	9.263e^-4	0.985	INTRON Glut1
X	16136339	X_16136339_SNP [dm3] X_16242306_SNP [dm6]	G	T	9.282e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5612146	3L_5612146_SNP [dm3] 3L_5619046_SNP [dm6]	G	C	9.301e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5612149	3L_5612149_SNP [dm3] 3L_5619049_SNP [dm6]	G	A	9.301e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3625024	2L_3625024_SNP [dm3] 2L_3625024_SNP [dm6]	G	C	9.305e^-4	0.985	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8765906	2L_8765906_SNP [dm3] 2L_8765906_SNP [dm6]	T	C	9.321e^-4	0.985	NON_SYNONYMOUS_CODING CG9463	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14617236	X_14617236_SNP [dm3] X_14723203_SNP [dm6]	T	C	9.341e^-4	0.985	INTRON NetB	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sbb
2L	14082661	2L_14082661_SNP [dm3] 2L_14082661_SNP [dm6]	C	G	9.355e^-4	0.985	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
2L	14082667	2L_14082667_SNP [dm3] 2L_14082667_SNP [dm6]	T	A	9.355e^-4	0.985	INTRON nAChRalpha5	TF binding site mE1_TFBS_zfh1
X	14690475	X_14690475_SNP [dm3] X_14796442_SNP [dm6]	T	A	9.356e^-4	0.985	INTRON rut
2L	11530671	2L_11530671_SNP [dm3] 2L_11530671_SNP [dm6]	C	G	9.378e^-4	0.985	SYNONYMOUS_CODING CG31706
3R	7853264	3R_7853264_SNP [dm3] 3R_12027542_SNP [dm6]	G	A	9.378e^-4	0.985	DOWNSTREAM CG31358 & 2 others INTERGENIC
2L	18716656	2L_18716656_SNP [dm3] 2L_18716656_SNP [dm6]	A	G	9.382e^-4	0.985	START_GAINED CG10348 UTR_5_PRIME CG10348	TF binding site mE1_TFBS_cad
3R	24776884	3R_24776884_SNP [dm3] 3R_28951162_SNP [dm6]	G	T	9.404e^-4	0.985	INTRON CG14521
3L	5852034	3L_5852034_DEL [dm3] 3L_5858934_DEL [dm6]	AA	A	9.410e^-4	0.985	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14617239	X_14617239_SNP [dm3] X_14723206_SNP [dm6]	C	G	9.416e^-4	0.985	INTRON NetB	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sbb
3L	9753847	3L_9753847_SNP [dm3] 3L_9760747_SNP [dm6]	G	C	9.447e^-4	0.985	UPSTREAM CR45407 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	19594342	2R_19594342_SNP [dm3] 2R_23706819_SNP [dm6]	A	T	9.453e^-4	0.985	UPSTREAM l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14350252	X_14350252_SNP [dm3] X_14456219_SNP [dm6]	A	T	9.464e^-4	0.985	INTRON dpr8
3R	7550976	3R_7550976_SNP [dm3] 3R_11725254_SNP [dm6]	G	C	9.470e^-4	0.985	INTRON CG12594	TF binding site mE1_TFBS_inv
2R	12027703	2R_12027703_SNP [dm3] 2R_16140198_SNP [dm6]	C	A	9.487e^-4	0.985	INTRON Got1
3R	7494612	3R_7494612_SNP [dm3] 3R_11668890_SNP [dm6]	T	C	9.488e^-4	0.985	NON_SYNONYMOUS_CODING CG42327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7498054	3R_7498054_SNP [dm3] 3R_11672332_SNP [dm6]	G	A	9.488e^-4	0.985	INTRON CG42327	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

LatCop phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results