DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.469e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01394

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	8.5064	0.0142

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3003 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	9114956	2L_9114956_SNP [dm3] 2L_9114956_SNP [dm6]	A	T	6.421e^-9	0.006	INTERGENIC
2L	9114957	2L_9114957_SNP [dm3] 2L_9114957_SNP [dm6]	C	A	6.421e^-9	0.006	INTERGENIC
2L	13731198	2L_13731198_SNP [dm3] 2L_13731198_SNP [dm6]	A	C	2.509e^-7	0.153	INTERGENIC
2L	11584570	2L_11584570_SNP [dm3] 2L_11584570_SNP [dm6]	G	A	5.313e^-7	0.182	DOWNSTREAM Mst33A INTRON kek2
2R	18978521	2R_18978521_SNP [dm3] 2R_23090998_SNP [dm6]	G	T	5.313e^-7	0.182	SYNONYMOUS_CODING CG9876	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	19561390	2L_19561390_SNP [dm3] 2L_19561390_SNP [dm6]	A	G	5.976e^-7	0.182	SYNONYMOUS_CODING Tep5
2R	11246343	2R_11246343_SNP [dm3] 2R_15358838_SNP [dm6]	T	A	7.043e^-7	0.184	INTRON unc-5	TF binding site mE1_TFBS_chinmo
3L	7748277	3L_7748277_SNP [dm3] 3L_7755177_SNP [dm6]	C	T	1.368e^-6	0.282	DOWNSTREAM CG7409 INTRON CG32373
2L	6694167	2L_6694167_SNP [dm3] 2L_6694167_SNP [dm6]	G	A	1.511e^-6	0.282	INTRON Tsp
3R	16634541	3R_16634541_SNP [dm3] 3R_20808819_SNP [dm6]	G	T	1.637e^-6	0.282	UTR_3_PRIME Syp
2L	16447653	2L_16447653_SNP [dm3] 2L_16447653_SNP [dm6]	A	G	2.219e^-6	0.282	DOWNSTREAM Idgf1 INTRON CG5888 & 1 other
3R	18595583	3R_18595583_SNP [dm3] 3R_22769861_SNP [dm6]	T	A	2.442e^-6	0.282	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
3R	18595619	3R_18595619_SNP [dm3] 3R_22769897_SNP [dm6]	G	A	2.442e^-6	0.282	SYNONYMOUS_CODING CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
2L	13376616	2L_13376616_SNP [dm3] 2L_13376616_SNP [dm6]	T	A	3.499e^-6	0.282	UTR_3_PRIME CG9302 DOWNSTREAM CG6565
2R	3766379	2R_3766379_SNP [dm3] 2R_7878874_SNP [dm6]	A	T	3.510e^-6	0.282	INTRON Dgk
3R	18595575	3R_18595575_SNP [dm3] 3R_22769853_SNP [dm6]	A	C	3.601e^-6	0.282	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
3R	18595578	3R_18595578_SNP [dm3] 3R_22769856_SNP [dm6]	G	A	3.601e^-6	0.282	UTR_3_PRIME CG43093 UPSTREAM CG43092 DOWNSTREAM CG43094 INTRON Usp12-46 & 1 other
3R	26018212	3R_26018212_DEL [dm3] 3R_30192490_DEL [dm6]	AA	A	3.752e^-6	0.282	INTERGENIC
2L	14070523	2L_14070523_INS [dm3] 2L_14070523_INS [dm6]	A	ATA	3.808e^-6	0.282	INTRON nAChRalpha5
2L	8842551	2L_8842551_SNP [dm3] 2L_8842551_SNP [dm6]	A	T	6.506e^-6	0.282	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	7748502	3L_7748502_SNP [dm3] 3L_7755402_SNP [dm6]	T	C	6.506e^-6	0.282	DOWNSTREAM CG7409 INTRON CG32373
2L	12370692	2L_12370692_SNP [dm3] 2L_12370692_SNP [dm6]	A	G	6.860e^-6	0.282	INTRON bru-2
3L	3261062	3L_3261062_SNP [dm3] 3L_3261062_SNP [dm6]	G	A	7.194e^-6	0.282	INTRON ckd
4	1238504	4_1238504_SNP [dm3] 4_1234778_SNP [dm6]	A	G	8.027e^-6	0.282	SYNONYMOUS_CODING Caps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16388616	2L_16388616_SNP [dm3] 2L_16388616_SNP [dm6]	G	C	8.033e^-6	0.282	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	9291552	X_9291552_SNP [dm3] X_9397519_SNP [dm6]	T	C	8.630e^-6	0.282	INTRON mgl
2L	16258113	2L_16258113_SNP [dm3] 2L_16258113_SNP [dm6]	A	C	8.668e^-6	0.282	UTR_5_PRIME EndoGI UPSTREAM PRL-1	TF binding site BDTNP1_TFBS_dl
3R	10261693	3R_10261693_SNP [dm3] 3R_14435971_SNP [dm6]	T	C	1.005e^-5	0.282	INTRON cv-c
2L	13103749	2L_13103749_SNP [dm3] 2L_13103749_SNP [dm6]	C	A	1.046e^-5	0.282	UPSTREAM CR45461 INTERGENIC
2L	12539112	2L_12539112_SNP [dm3] 2L_12539112_SNP [dm6]	A	G	1.179e^-5	0.282	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12179615	2R_12179615_SNP [dm3] 2R_16292110_SNP [dm6]	A	G	1.220e^-5	0.282	NON_SYNONYMOUS_CODING CG30100 UTR_3_PRIME CG42372 UPSTREAM CR43730 DOWNSTREAM CG7747 & 1 other	TF binding site mE1_TFBS_HSA
3L	21460495	3L_21460495_SNP [dm3] 3L_21467395_SNP [dm6]	A	C	1.376e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9392532	2R_9392532_SNP [dm3] 2R_13505027_SNP [dm6]	C	A	1.386e^-5	0.282	SYNONYMOUS_CODING mars	TF binding site mE1_TFBS_chinmo
X	12451748	X_12451748_INS [dm3] X_12557715_INS [dm6]	A	AAA	1.476e^-5	0.282	INTRON CG43921
2L	1048553	2L_1048553_SNP [dm3] 2L_1048553_SNP [dm6]	G	A	1.598e^-5	0.282	UPSTREAM IA-2 INTERGENIC
2L	1048559	2L_1048559_SNP [dm3] 2L_1048559_SNP [dm6]	G	A	1.598e^-5	0.282	UPSTREAM IA-2 INTERGENIC
2L	1048568	2L_1048568_SNP [dm3] 2L_1048568_SNP [dm6]	C	A	1.598e^-5	0.282	UPSTREAM IA-2 INTERGENIC
2L	1048578	2L_1048578_SNP [dm3] 2L_1048578_SNP [dm6]	T	A	1.598e^-5	0.282	UPSTREAM IA-2 INTERGENIC
2L	1048583	2L_1048583_SNP [dm3] 2L_1048583_SNP [dm6]	A	G	1.598e^-5	0.282	UPSTREAM IA-2 INTERGENIC
3L	7818184	3L_7818184_INS [dm3] 3L_7825084_INS [dm6]	A	ATTCC	1.598e^-5	0.282	INTRON Pdp1
3L	7818186	3L_7818186_SNP [dm3] 3L_7825086_SNP [dm6]	G	C	1.598e^-5	0.282	INTRON Pdp1
3L	7818188	3L_7818188_INS [dm3] 3L_7825088_INS [dm6]	G	GTTGC	1.598e^-5	0.282	INTRON Pdp1
3L	7818191	3L_7818191_SNP [dm3] 3L_7825091_SNP [dm6]	A	G	1.598e^-5	0.282	INTRON Pdp1
3L	7818195	3L_7818195_DEL [dm3] 3L_7825095_DEL [dm6]	ATG	A	1.598e^-5	0.282	INTRON Pdp1
3L	8554439	3L_8554439_SNP [dm3] 3L_8561339_SNP [dm6]	C	G	1.598e^-5	0.282	INTRON rhea
3L	8554474	3L_8554474_SNP [dm3] 3L_8561374_SNP [dm6]	T	C	1.598e^-5	0.282	UTR_5_PRIME rhea
2L	9188842	2L_9188842_SNP [dm3] 2L_9188842_SNP [dm6]	C	T	1.615e^-5	0.282	INTRON tai
X	2170730	X_2170730_SNP [dm3] X_2276697_SNP [dm6]	A	C	1.632e^-5	0.282	NON_SYNONYMOUS_CODING Vml	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10706313	3L_10706313_SNP [dm3] 3L_10713213_SNP [dm6]	T	C	1.778e^-5	0.282	INTERGENIC
2L	14549334	2L_14549334_SNP [dm3] 2L_14549334_SNP [dm6]	G	A	1.870e^-5	0.282	UPSTREAM CG4218 INTERGENIC	TF binding site mE1_TFBS_cad
4	1070161	4_1070161_SNP [dm3] 4_1049535_SNP [dm6]	A	C	1.870e^-5	0.282	INTRON CaMKII
3L	7818203	3L_7818203_SNP [dm3] 3L_7825103_SNP [dm6]	G	T	2.008e^-5	0.282	INTRON Pdp1
2R	14408171	2R_14408171_SNP [dm3] 2R_18520666_SNP [dm6]	T	C	2.011e^-5	0.282	SPLICE_SITE_REGION CG43066 INTRON CG43066	TF binding site mE1_TFBS_chinmo
3L	21453439	3L_21453439_SNP [dm3] 3L_21460339_SNP [dm6]	G	A	2.046e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11360755	3L_11360755_SNP [dm3] 3L_11367655_SNP [dm6]	T	C	2.189e^-5	0.282	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12254750	2L_12254750_SNP [dm3] 2L_12254750_SNP [dm6]	C	T	2.252e^-5	0.282	INTRON aret
2R	18070289	2R_18070289_INS [dm3] 2R_22182784_INS [dm6]	A	ACACCTGCGTCGGCG...	2.279e^-5	0.282	UTR_5_PRIME CG11170 UPSTREAM MED16 DOWNSTREAM CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9865085	3R_9865085_SNP [dm3] 3R_14039363_SNP [dm6]	T	C	2.335e^-5	0.282	INTERGENIC
3L	18759018	3L_18759018_SNP [dm3] 3L_18765918_SNP [dm6]	C	T	2.340e^-5	0.282	UPSTREAM ftz-f1 INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9122103	2L_9122103_SNP [dm3] 2L_9122103_SNP [dm6]	G	A	2.373e^-5	0.282	UPSTREAM CR44616 INTERGENIC	TF binding site BDTNP1_TFBS_hb
4	1066900	4_1066900_SNP [dm3] 4_1046274_SNP [dm6]	A	G	2.373e^-5	0.282	INTRON CaMKII	transposable element FlyBase
4	908535	4_908535_SNP [dm3] 4_887909_SNP [dm6]	A	G	2.373e^-5	0.282	NON_SYNONYMOUS_CODING unc-13 INTRON unc-13	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13103729	2L_13103729_SNP [dm3] 2L_13103729_SNP [dm6]	C	A	2.531e^-5	0.282	UPSTREAM CR45461 INTERGENIC
2L	6694003	2L_6694003_SNP [dm3] 2L_6694003_SNP [dm6]	T	A	2.630e^-5	0.282	INTRON Tsp
2R	10822536	2R_10822536_INS [dm3] 2R_14935031_INS [dm6]	A	AAA	2.699e^-5	0.282	UPSTREAM Lap1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1
2L	18506752	2L_18506752_SNP [dm3] 2L_18506752_SNP [dm6]	G	T	2.753e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14070421	2L_14070421_SNP [dm3] 2L_14070421_SNP [dm6]	C	G	2.819e^-5	0.282	INTRON nAChRalpha5
2L	13358705	2L_13358705_SNP [dm3] 2L_13358705_SNP [dm6]	A	G	2.929e^-5	0.282	INTERGENIC
X	14046009	X_14046009_SNP [dm3] X_14151976_SNP [dm6]	T	G	2.943e^-5	0.282	UTR_5_PRIME CG12479
X	14046001	X_14046001_SNP [dm3] X_14151968_SNP [dm6]	C	G	3.191e^-5	0.282	UTR_5_PRIME CG12479
3L	12056550	3L_12056550_DEL [dm3] 3L_12063450_DEL [dm6]	AAAAGCGG	A	3.380e^-5	0.282	INTRON rols	TF binding site mE1_TFBS_HSA
3L	12856850	3L_12856850_SNP [dm3] 3L_12863750_SNP [dm6]	T	C	3.380e^-5	0.282	UPSTREAM CG10943 INTERGENIC
3R	13857285	3R_13857285_SNP [dm3] 3R_18031563_SNP [dm6]	G	T	3.380e^-5	0.282	INTERGENIC
X	10296227	X_10296227_SNP [dm3] X_10402194_SNP [dm6]	T	C	3.380e^-5	0.282	INTRON flw
2R	19493775	2R_19493775_SNP [dm3] 2R_23606252_SNP [dm6]	T	C	3.397e^-5	0.282	NON_SYNONYMOUS_CODING CG17662 INTRON CG17664	TF binding site mE1_TFBS_chinmo
2L	13358799	2L_13358799_SNP [dm3] 2L_13358799_SNP [dm6]	T	C	3.415e^-5	0.282	INTERGENIC
3L	3028127	3L_3028127_SNP [dm3] 3L_3028127_SNP [dm6]	T	C	3.464e^-5	0.282	INTERGENIC
2L	20165775	2L_20165775_SNP [dm3] 2L_20165775_SNP [dm6]	G	A	3.467e^-5	0.282	INTERGENIC	transposable element FlyBase
2R	9775801	2R_9775801_SNP [dm3] 2R_13888296_SNP [dm6]	G	T	3.566e^-5	0.282	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2R	9775828	2R_9775828_SNP [dm3] 2R_13888323_SNP [dm6]	G	T	3.566e^-5	0.282	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	14164783	2L_14164783_SNP [dm3] 2L_14164783_SNP [dm6]	C	T	3.761e^-5	0.282	SYNONYMOUS_CODING CG43333
2L	14165005	2L_14165005_SNP [dm3] 2L_14165005_SNP [dm6]	C	T	3.761e^-5	0.282	SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad
2L	14165202	2L_14165202_SNP [dm3] 2L_14165202_SNP [dm6]	T	C	3.761e^-5	0.282	NON_SYNONYMOUS_CODING CG43333	TF binding site mE1_TFBS_cad
2L	4657135	2L_4657135_SNP [dm3] 2L_4657135_SNP [dm6]	T	C	3.761e^-5	0.282	INTERGENIC
2L	9846569	2L_9846569_SNP [dm3] 2L_9846569_SNP [dm6]	A	G	3.761e^-5	0.282	INTRON nAChRalpha6
2L	9940433	2L_9940433_SNP [dm3] 2L_9940433_SNP [dm6]	A	C	3.761e^-5	0.282	SYNONYMOUS_CODING CG4619 DOWNSTREAM CG5853
2L	9995743	2L_9995743_DEL [dm3] 2L_9995743_DEL [dm6]	CAAGGCCTTTTTTATG...	C	3.761e^-5	0.282	UTR_3_PRIME CG31875 DOWNSTREAM bib & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11484632	2R_11484632_SNP [dm3] 2R_15597127_SNP [dm6]	G	A	3.761e^-5	0.282	INTERGENIC
2R	11972364	2R_11972364_SNP [dm3] 2R_16084859_SNP [dm6]	T	C	3.761e^-5	0.282	SYNONYMOUS_CODING Dg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6111986	2R_6111986_SNP [dm3] 2R_10224481_SNP [dm6]	G	A	3.761e^-5	0.282	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6111996	2R_6111996_INS [dm3] 2R_10224491_INS [dm6]	T	TGA	3.761e^-5	0.282	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6112003	2R_6112003_SNP [dm3] 2R_10224498_SNP [dm6]	G	A	3.761e^-5	0.282	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	6112004	2R_6112004_SNP [dm3] 2R_10224499_SNP [dm6]	T	C	3.761e^-5	0.282	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11060730	3L_11060730_SNP [dm3] 3L_11067630_SNP [dm6]	T	C	3.761e^-5	0.282	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1144160	3L_1144160_SNP [dm3] 3L_1144160_SNP [dm6]	G	T	3.761e^-5	0.282	INTRON bab2
3L	15707684	3L_15707684_SNP [dm3] 3L_15714584_SNP [dm6]	T	A	3.761e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16477873	3L_16477873_SNP [dm3] 3L_16484773_SNP [dm6]	A	G	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477887	3L_16477887_SNP [dm3] 3L_16484787_SNP [dm6]	T	C	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477910	3L_16477910_SNP [dm3] 3L_16484810_SNP [dm6]	G	T	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477914	3L_16477914_SNP [dm3] 3L_16484814_SNP [dm6]	A	G	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477916	3L_16477916_SNP [dm3] 3L_16484816_SNP [dm6]	G	T	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477926	3L_16477926_SNP [dm3] 3L_16484826_SNP [dm6]	T	C	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477933	3L_16477933_SNP [dm3] 3L_16484833_SNP [dm6]	C	T	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477942	3L_16477942_SNP [dm3] 3L_16484842_SNP [dm6]	A	T	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477943	3L_16477943_DEL [dm3] 3L_16484843_DEL [dm6]	TAC	T	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477948	3L_16477948_DEL [dm3] 3L_16484848_DEL [dm6]	CAA	C	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477952	3L_16477952_SNP [dm3] 3L_16484852_SNP [dm6]	A	G	3.761e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2610630	3L_2610630_SNP [dm3] 3L_2610630_SNP [dm6]	A	G	3.761e^-5	0.282	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2610638	3L_2610638_SNP [dm3] 3L_2610638_SNP [dm6]	A	G	3.761e^-5	0.282	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2612189	3L_2612189_SNP [dm3] 3L_2612189_SNP [dm6]	T	C	3.761e^-5	0.282	INTRON Pxn
3L	2872019	3L_2872019_SNP [dm3] 3L_2872019_SNP [dm6]	G	C	3.761e^-5	0.282	UTR_5_PRIME CG43444	TF binding site mE1_TFBS_HSA
3L	7816331	3L_7816331_SNP [dm3] 3L_7823231_SNP [dm6]	C	T	3.761e^-5	0.282	INTRON Pdp1
3L	7876658	3L_7876658_SNP [dm3] 3L_7883558_SNP [dm6]	G	A	3.761e^-5	0.282	INTRON CG32365
3R	16317452	3R_16317452_SNP [dm3] 3R_20491730_SNP [dm6]	A	C	3.761e^-5	0.282	INTERGENIC
3R	16317503	3R_16317503_SNP [dm3] 3R_20491781_SNP [dm6]	A	G	3.761e^-5	0.282	INTERGENIC
3R	16317662	3R_16317662_SNP [dm3] 3R_20491940_SNP [dm6]	G	A	3.761e^-5	0.282	INTERGENIC
3R	16318851	3R_16318851_SNP [dm3] 3R_20493129_SNP [dm6]	A	G	3.761e^-5	0.282	INTERGENIC
3R	16318947	3R_16318947_SNP [dm3] 3R_20493225_SNP [dm6]	C	T	3.761e^-5	0.282	INTERGENIC
3R	16319531	3R_16319531_SNP [dm3] 3R_20493809_SNP [dm6]	T	G	3.761e^-5	0.282	INTERGENIC
3R	16319680	3R_16319680_SNP [dm3] 3R_20493958_SNP [dm6]	T	C	3.761e^-5	0.282	INTERGENIC
3R	19239430	3R_19239430_SNP [dm3] 3R_23413708_SNP [dm6]	C	A	3.761e^-5	0.282	INTRON CG4374
3R	19826459	3R_19826459_SNP [dm3] 3R_24000737_SNP [dm6]	G	C	3.761e^-5	0.282	SYNONYMOUS_CODING KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22999151	3R_22999151_SNP [dm3] 3R_27173429_SNP [dm6]	C	G	3.761e^-5	0.282	SYNONYMOUS_CODING Ser	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	24066475	3R_24066475_SNP [dm3] 3R_28240753_SNP [dm6]	G	C	3.761e^-5	0.282	DOWNSTREAM CG34354 INTERGENIC
3L	2798456	3L_2798456_SNP [dm3] 3L_2798456_SNP [dm6]	A	G	3.798e^-5	0.282	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8718015	3L_8718015_SNP [dm3] 3L_8724915_SNP [dm6]	T	C	3.893e^-5	0.282	SYNONYMOUS_CODING CG6511 DOWNSTREAM CG43965
X	6968134	X_6968134_SNP [dm3] X_7074101_SNP [dm6]	G	A	4.120e^-5	0.282	DOWNSTREAM Sxl INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
X	13657837	X_13657837_SNP [dm3] X_13763804_SNP [dm6]	T	C	4.291e^-5	0.282	INTRON rdgB	TF binding site BDTNP1_TFBS_dl
X	18724741	X_18724741_SNP [dm3] X_18830708_SNP [dm6]	C	A	4.291e^-5	0.282	NON_SYNONYMOUS_CODING CG7101 DOWNSTREAM CG42450	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	18726899	X_18726899_SNP [dm3] X_18832866_SNP [dm6]	T	C	4.291e^-5	0.282	UTR_5_PRIME Pvf1 DOWNSTREAM CG7101	TF binding site mE1_TFBS_Trl
2R	11349537	2R_11349537_SNP [dm3] 2R_15462032_SNP [dm6]	T	C	4.364e^-5	0.282	INTRON CG43729
2L	8353313	2L_8353313_SNP [dm3] 2L_8353313_SNP [dm6]	T	C	4.528e^-5	0.282	INTRON Mur29B
2R	18066148	2R_18066148_SNP [dm3] 2R_22178643_SNP [dm6]	T	C	4.634e^-5	0.282	UTR_5_PRIME CG11170 INTRON CG11170	TF binding site BDTNP1_TFBS_twi
2R	18073584	2R_18073584_SNP [dm3] 2R_22186079_SNP [dm6]	T	C	4.634e^-5	0.282	UTR_5_PRIME Vps35 DOWNSTREAM MED16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11460484	2R_11460484_SNP [dm3] 2R_15572979_SNP [dm6]	G	A	4.778e^-5	0.282	UTR_3_PRIME CG30466 DOWNSTREAM CG8204
3L	16628910	3L_16628910_SNP [dm3] 3L_16635810_SNP [dm6]	A	G	4.778e^-5	0.282	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7355196	3L_7355196_SNP [dm3] 3L_7362096_SNP [dm6]	A	C	4.778e^-5	0.282	SYNONYMOUS_CODING Sec63	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15390715	3R_15390715_SNP [dm3] 3R_19564993_SNP [dm6]	G	T	4.778e^-5	0.282	INTRON Dys
3L	16026997	3L_16026997_SNP [dm3] 3L_16033897_SNP [dm6]	A	C	4.873e^-5	0.282	UPSTREAM CG42717 & 1 other INTRON CG42716	TF binding site mE1_TFBS_HSA
X	3567184	X_3567184_SNP [dm3] X_3673151_SNP [dm6]	A	G	4.873e^-5	0.282	INTRON Mnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13544981	2R_13544981_SNP [dm3] 2R_17657476_SNP [dm6]	G	A	5.020e^-5	0.282	INTRON CCHa1-R	TF binding site mE1_TFBS_sens
2L	12491033	2L_12491033_SNP [dm3] 2L_12491033_SNP [dm6]	T	A	5.123e^-5	0.282	INTRON bun
2L	3416128	2L_3416128_SNP [dm3] 2L_3416128_SNP [dm6]	G	A	5.123e^-5	0.282	UPSTREAM CG31952 INTRON pgant2
3L	14450614	3L_14450614_SNP [dm3] 3L_14457514_SNP [dm6]	A	C	5.123e^-5	0.282	INTRON bbg	TF binding site mE1_TFBS_cad
3L	16477947	3L_16477947_SNP [dm3] 3L_16484847_SNP [dm6]	A	G	5.123e^-5	0.282	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16749436	3R_16749436_SNP [dm3] 3R_20923714_SNP [dm6]	C	G	5.123e^-5	0.282	INTRON CG31191 & 1 other
3L	7093091	3L_7093091_SNP [dm3] 3L_7099991_SNP [dm6]	G	C	5.184e^-5	0.282	INTRON form3
2L	10740185	2L_10740185_SNP [dm3] 2L_10740185_SNP [dm6]	C	A	5.275e^-5	0.282	UTR_3_PRIME CG12299 DOWNSTREAM CG6729	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13538377	2L_13538377_SNP [dm3] 2L_13538377_SNP [dm6]	T	C	5.275e^-5	0.282	INTRON B4
2L	14161694	2L_14161694_SNP [dm3] 2L_14161694_SNP [dm6]	T	A	5.275e^-5	0.282	SYNONYMOUS_CODING CG43332	TF binding site mE1_TFBS_sens
2R	11484336	2R_11484336_SNP [dm3] 2R_15596831_SNP [dm6]	A	T	5.275e^-5	0.282	INTERGENIC
2R	11484629	2R_11484629_SNP [dm3] 2R_15597124_SNP [dm6]	T	C	5.275e^-5	0.282	INTERGENIC
2R	9198674	2R_9198674_SNP [dm3] 2R_13311169_SNP [dm6]	T	A	5.275e^-5	0.282	INTERGENIC
3L	12278197	3L_12278197_SNP [dm3] 3L_12285097_SNP [dm6]	A	G	5.275e^-5	0.282	INTERGENIC
3R	16317547	3R_16317547_SNP [dm3] 3R_20491825_SNP [dm6]	T	G	5.275e^-5	0.282	INTERGENIC
3R	16319262	3R_16319262_SNP [dm3] 3R_20493540_SNP [dm6]	T	C	5.275e^-5	0.282	INTERGENIC
X	15853428	X_15853428_SNP [dm3] X_15959395_SNP [dm6]	G	C	5.275e^-5	0.282	INTRON mmd
3L	16631918	3L_16631918_SNP [dm3] 3L_16638818_SNP [dm6]	T	C	5.361e^-5	0.282	INTRON Abl
2R	3441055	2R_3441055_SNP [dm3] 2R_7553550_SNP [dm6]	G	T	5.398e^-5	0.282	INTRON Corin
2L	10472091	2L_10472091_SNP [dm3] 2L_10472091_SNP [dm6]	T	C	5.409e^-5	0.282	SYNONYMOUS_CODING RluA-1	TF binding site mE1_TFBS_chinmo
2L	13103746	2L_13103746_SNP [dm3] 2L_13103746_SNP [dm6]	T	C	5.409e^-5	0.282	UPSTREAM CR45461 INTERGENIC
2L	696302	2L_696302_DEL [dm3] 2L_696302_DEL [dm6]	GG	G	5.409e^-5	0.282	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8440976	2R_8440976_SNP [dm3] 2R_12553471_SNP [dm6]	A	G	5.409e^-5	0.282	INTRON fra
3L	12080145	3L_12080145_SNP [dm3] 3L_12087045_SNP [dm6]	G	A	5.409e^-5	0.282	INTERGENIC
3R	21350719	3R_21350719_SNP [dm3] 3R_25524997_SNP [dm6]	G	A	5.409e^-5	0.282	INTRON msi
3R	9905702	3R_9905702_SNP [dm3] 3R_14079980_SNP [dm6]	T	C	5.409e^-5	0.282	INTRON foxo
X	13637031	X_13637031_SNP [dm3] X_13742998_SNP [dm6]	G	A	5.409e^-5	0.282	SYNONYMOUS_CODING Grip91	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18187315	X_18187315_SNP [dm3] X_18293282_SNP [dm6]	G	A	5.409e^-5	0.282	DOWNSTREAM CR15061 INTERGENIC
X	18187319	X_18187319_SNP [dm3] X_18293286_SNP [dm6]	T	A	5.409e^-5	0.282	DOWNSTREAM CR15061 INTERGENIC
X	18187334	X_18187334_SNP [dm3] X_18293301_SNP [dm6]	T	C	5.409e^-5	0.282	DOWNSTREAM CR15061 INTERGENIC
X	18724627	X_18724627_SNP [dm3] X_18830594_SNP [dm6]	C	T	5.409e^-5	0.282	UTR_5_PRIME CG7101 DOWNSTREAM CG42450	TF binding site mE1_TFBS_cad
X	2159736	X_2159736_SNP [dm3] X_2265703_SNP [dm6]	G	A	5.409e^-5	0.282	UTR_3_PRIME CG2924 DOWNSTREAM CG3071
X	2162422	X_2162422_SNP [dm3] X_2268389_SNP [dm6]	G	A	5.409e^-5	0.282	INTRON CG2924	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	2163991	X_2163991_SNP [dm3] X_2269958_SNP [dm6]	G	C	5.409e^-5	0.282	UPSTREAM CR45480 & 1 other INTRON CG2924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
X	2169870	X_2169870_SNP [dm3] X_2275837_SNP [dm6]	C	T	5.409e^-5	0.282	UPSTREAM Vml & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	2170044	X_2170044_SNP [dm3] X_2276011_SNP [dm6]	C	T	5.409e^-5	0.282	SYNONYMOUS_CODING Vml UPSTREAM CG2918
2L	9362725	2L_9362725_SNP [dm3] 2L_9362725_SNP [dm6]	G	A	5.480e^-5	0.282	INTERGENIC
3R	2470580	3R_2470580_DEL [dm3] 3R_6644858_DEL [dm6]	TA	T	5.480e^-5	0.282	UPSTREAM CG1315 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9676744	2L_9676744_SNP [dm3] 2L_9676744_SNP [dm6]	C	T	5.516e^-5	0.282	INTERGENIC
2L	9676771	2L_9676771_SNP [dm3] 2L_9676771_SNP [dm6]	C	A	5.516e^-5	0.282	INTERGENIC
3L	12287106	3L_12287106_SNP [dm3] 3L_12294006_SNP [dm6]	T	C	5.595e^-5	0.282	INTRON CG4328
2R	18073395	2R_18073395_SNP [dm3] 2R_22185890_SNP [dm6]	T	C	5.664e^-5	0.282	UTR_3_PRIME MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18073396	2R_18073396_SNP [dm3] 2R_22185891_SNP [dm6]	C	G	5.664e^-5	0.282	UTR_3_PRIME MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18073401	2R_18073401_SNP [dm3] 2R_22185896_SNP [dm6]	T	C	5.664e^-5	0.282	UPSTREAM Vps35 DOWNSTREAM MED16 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12451754	X_12451754_SNP [dm3] X_12557721_SNP [dm6]	T	A	5.735e^-5	0.282	INTRON CG43921
3R	8365396	3R_8365396_SNP [dm3] 3R_12539674_SNP [dm6]	A	C	5.986e^-5	0.282	INTRON Octbeta3R
2L	14070373	2L_14070373_DEL [dm3] 2L_14070373_DEL [dm6]	GCACCG	G	6.185e^-5	0.282	INTRON nAChRalpha5
2L	16389017	2L_16389017_SNP [dm3] 2L_16389017_SNP [dm6]	T	A	6.185e^-5	0.282	INTERGENIC
2L	8705457	2L_8705457_DEL [dm3] 2L_8705457_DEL [dm6]	AAGTCGCATAC...	T	6.185e^-5	0.282	UPSTREAM CG9314 DOWNSTREAM CR44992 INTRON Hnf4
2L	8705550	2L_8705550_SNP [dm3] 2L_8705550_SNP [dm6]	T	A	6.185e^-5	0.282	UPSTREAM CG9314 DOWNSTREAM CR44992 INTRON Hnf4
2L	8705587	2L_8705587_SNP [dm3] 2L_8705587_SNP [dm6]	A	G	6.185e^-5	0.282	UTR_5_PRIME CG9314 DOWNSTREAM CR44992 INTRON Hnf4
2R	759603	2R_759603_SNP [dm3] 2R_4872098_SNP [dm6]	C	G	6.185e^-5	0.282	INTERGENIC	transposable element FlyBase
3L	567127	3L_567127_SNP [dm3] 3L_567127_SNP [dm6]	G	A	6.250e^-5	0.282	INTRON hipk
2L	12547122	2L_12547122_DEL [dm3] 2L_12547122_DEL [dm6]	AA	A	6.355e^-5	0.282	UPSTREAM bun INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19041415	X_19041415_SNP [dm3] X_19147382_SNP [dm6]	A	G	6.490e^-5	0.282	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8328457	2L_8328457_DEL [dm3] 2L_8328457_DEL [dm6]	TGA	T	6.515e^-5	0.282	UPSTREAM CG14275 INTRON CG14275
2L	1048498	2L_1048498_SNP [dm3] 2L_1048498_SNP [dm6]	G	T	6.630e^-5	0.282	UPSTREAM IA-2 INTERGENIC
2L	11871378	2L_11871378_SNP [dm3] 2L_11871378_SNP [dm6]	C	G	6.700e^-5	0.282	INTRON Pde1c
3L	15508623	3L_15508623_SNP [dm3] 3L_15515523_SNP [dm6]	G	T	6.700e^-5	0.282	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	18059826	X_18059826_SNP [dm3] X_18165793_SNP [dm6]	T	A	6.715e^-5	0.282	INTRON Frq1
2L	10883830	2L_10883830_SNP [dm3] 2L_10883830_SNP [dm6]	G	A	6.855e^-5	0.282	INTERGENIC
2L	11339977	2L_11339977_DEL [dm3] 2L_11339977_DEL [dm6]	CGTTTTTTATTTGGC...	C	6.855e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3346339	2L_3346339_SNP [dm3] 2L_3346339_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON E23
2L	5472870	2L_5472870_SNP [dm3] 2L_5472870_SNP [dm6]	C	A	6.855e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5484831	2L_5484831_SNP [dm3] 2L_5484831_SNP [dm6]	G	T	6.855e^-5	0.282	INTERGENIC
2L	5752827	2L_5752827_SNP [dm3] 2L_5752827_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON CG11030
2L	628974	2L_628974_SNP [dm3] 2L_628974_SNP [dm6]	T	G	6.855e^-5	0.282	DOWNSTREAM CG2839 EXON CR45369
2L	628990	2L_628990_SNP [dm3] 2L_628990_SNP [dm6]	A	T	6.855e^-5	0.282	DOWNSTREAM CG2839 EXON CR45369
2L	734833	2L_734833_SNP [dm3] 2L_734833_SNP [dm6]	G	C	6.855e^-5	0.282	INTERGENIC
2L	948616	2L_948616_SNP [dm3] 2L_948616_SNP [dm6]	A	C	6.855e^-5	0.282	INTRON CG4341
2L	948632	2L_948632_SNP [dm3] 2L_948632_SNP [dm6]	C	A	6.855e^-5	0.282	INTRON CG4341
2L	948635	2L_948635_SNP [dm3] 2L_948635_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON CG4341
2R	10713324	2R_10713324_DEL [dm3] 2R_14825819_DEL [dm6]	GTT	G	6.855e^-5	0.282	INTERGENIC
2R	12333491	2R_12333491_SNP [dm3] 2R_16445986_SNP [dm6]	C	T	6.855e^-5	0.282	UTR_5_PRIME CG15925
2R	15032873	2R_15032873_SNP [dm3] 2R_19145368_SNP [dm6]	T	G	6.855e^-5	0.282	DOWNSTREAM CR43399 INTRON ena
2R	15032906	2R_15032906_SNP [dm3] 2R_19145401_SNP [dm6]	C	A	6.855e^-5	0.282	DOWNSTREAM CR43399 INTRON ena
2R	15034351	2R_15034351_SNP [dm3] 2R_19146846_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON ena	TF binding site mE1_TFBS_inv
2R	15034394	2R_15034394_SNP [dm3] 2R_19146889_SNP [dm6]	C	A	6.855e^-5	0.282	INTRON ena	TF binding site mE1_TFBS_inv
2R	15398261	2R_15398261_SNP [dm3] 2R_19510756_SNP [dm6]	T	C	6.855e^-5	0.282	NON_SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56d
2R	16049393	2R_16049393_SNP [dm3] 2R_20161888_SNP [dm6]	G	A	6.855e^-5	0.282	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	1655825	2R_1655825_SNP [dm3] 2R_5768320_SNP [dm6]	T	A	6.855e^-5	0.282	INTRON Gp210
2R	18061366	2R_18061366_SNP [dm3] 2R_22173861_SNP [dm6]	C	T	6.855e^-5	0.282	SYNONYMOUS_CODING CG3045	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18070283	2R_18070283_INS [dm3] 2R_22182778_INS [dm6]	C	CAGA	6.855e^-5	0.282	UTR_5_PRIME CG11170 UPSTREAM MED16 DOWNSTREAM CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18070285	2R_18070285_SNP [dm3] 2R_22182780_SNP [dm6]	A	C	6.855e^-5	0.282	START_GAINED CG11170 UTR_5_PRIME CG11170 UPSTREAM MED16 DOWNSTREAM CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18070288	2R_18070288_SNP [dm3] 2R_22182783_SNP [dm6]	A	G	6.855e^-5	0.282	UTR_5_PRIME CG11170 UPSTREAM MED16 DOWNSTREAM CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18072785	2R_18072785_SNP [dm3] 2R_22185280_SNP [dm6]	A	G	6.855e^-5	0.282	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	18085457	2R_18085457_SNP [dm3] 2R_22197952_SNP [dm6]	T	A	6.855e^-5	0.282	UPSTREAM snoRNA:Or-CD1 INTRON Swim
2R	18745821	2R_18745821_SNP [dm3] 2R_22858298_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON inaD	TF binding site mE1_TFBS_cad
2R	19881933	2R_19881933_SNP [dm3] 2R_23994410_SNP [dm6]	C	T	6.855e^-5	0.282	SYNONYMOUS_CODING CG3860
2R	19886570	2R_19886570_SNP [dm3] 2R_23999047_SNP [dm6]	G	T	6.855e^-5	0.282	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
2R	19889483	2R_19889483_SNP [dm3] 2R_24001960_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19890128	2R_19890128_SNP [dm3] 2R_24002605_SNP [dm6]	T	G	6.855e^-5	0.282	NON_SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
2R	19890902	2R_19890902_SNP [dm3] 2R_24003379_SNP [dm6]	C	T	6.855e^-5	0.282	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19890949	2R_19890949_SNP [dm3] 2R_24003426_SNP [dm6]	A	T	6.855e^-5	0.282	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19891159	2R_19891159_SNP [dm3] 2R_24003636_SNP [dm6]	T	A	6.855e^-5	0.282	NON_SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19891173	2R_19891173_SNP [dm3] 2R_24003650_SNP [dm6]	C	G	6.855e^-5	0.282	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19891393	2R_19891393_SNP [dm3] 2R_24003870_SNP [dm6]	C	T	6.855e^-5	0.282	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19891450	2R_19891450_SNP [dm3] 2R_24003927_SNP [dm6]	A	G	6.855e^-5	0.282	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19892194	2R_19892194_SNP [dm3] 2R_24004671_SNP [dm6]	G	T	6.855e^-5	0.282	INTRON Unc-89
2R	2949522	2R_2949522_SNP [dm3] 2R_7062017_SNP [dm6]	G	T	6.855e^-5	0.282	UPSTREAM pgant3 DOWNSTREAM Tsp42Eq INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	2987320	2R_2987320_SNP [dm3] 2R_7099815_SNP [dm6]	G	C	6.855e^-5	0.282	INTRON esn
2R	2987744	2R_2987744_SNP [dm3] 2R_7100239_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON esn
2R	5424495	2R_5424495_SNP [dm3] 2R_9536990_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON brp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7638748	2R_7638748_SNP [dm3] 2R_11751243_SNP [dm6]	T	C	6.855e^-5	0.282	INTERGENIC
2R	8850238	2R_8850238_SNP [dm3] 2R_12962733_SNP [dm6]	C	T	6.855e^-5	0.282	INTERGENIC
2R	8853307	2R_8853307_SNP [dm3] 2R_12965802_SNP [dm6]	C	T	6.855e^-5	0.282	DOWNSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8853398	2R_8853398_SNP [dm3] 2R_12965893_SNP [dm6]	C	A	6.855e^-5	0.282	DOWNSTREAM Psc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1011653	3L_1011653_SNP [dm3] 3L_1011653_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON trio
3L	1034339	3L_1034339_SNP [dm3] 3L_1034339_SNP [dm6]	T	C	6.855e^-5	0.282	UPSTREAM CG9205 INTRON trio	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11533064	3L_11533064_SNP [dm3] 3L_11539964_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON Mob2	TF binding site mE1_TFBS_inv
3L	12056539	3L_12056539_SNP [dm3] 3L_12063439_SNP [dm6]	A	T	6.855e^-5	0.282	INTRON rols	TF binding site mE1_TFBS_HSA
3L	12060374	3L_12060374_SNP [dm3] 3L_12067274_SNP [dm6]	A	G	6.855e^-5	0.282	DOWNSTREAM Sema-5c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
3L	12063206	3L_12063206_SNP [dm3] 3L_12070106_SNP [dm6]	T	C	6.855e^-5	0.282	SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12063344	3L_12063344_SNP [dm3] 3L_12070244_SNP [dm6]	C	G	6.855e^-5	0.282	SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12063374	3L_12063374_SNP [dm3] 3L_12070274_SNP [dm6]	A	G	6.855e^-5	0.282	SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12063791	3L_12063791_SNP [dm3] 3L_12070691_SNP [dm6]	G	A	6.855e^-5	0.282	SYNONYMOUS_CODING Sema-5c
3L	12064412	3L_12064412_SNP [dm3] 3L_12071312_SNP [dm6]	T	A	6.855e^-5	0.282	INTRON Sema-5c
3L	12064530	3L_12064530_SNP [dm3] 3L_12071430_SNP [dm6]	T	G	6.855e^-5	0.282	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
3L	12075891	3L_12075891_SNP [dm3] 3L_12082791_SNP [dm6]	A	G	6.855e^-5	0.282	UPSTREAM Sema-5c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3L	12075911	3L_12075911_SNP [dm3] 3L_12082811_SNP [dm6]	C	T	6.855e^-5	0.282	UPSTREAM Sema-5c INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3L	12075937	3L_12075937_INS [dm3] 3L_12082837_INS [dm6]	A	AT	6.855e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3L	12075941	3L_12075941_SNP [dm3] 3L_12082841_SNP [dm6]	T	A	6.855e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3L	12075943	3L_12075943_SNP [dm3] 3L_12082843_SNP [dm6]	C	T	6.855e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3L	12076901	3L_12076901_SNP [dm3] 3L_12083801_SNP [dm6]	G	A	6.855e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12081195	3L_12081195_SNP [dm3] 3L_12088095_SNP [dm6]	A	T	6.855e^-5	0.282	UPSTREAM CG17154 INTERGENIC
3L	12106588	3L_12106588_SNP [dm3] 3L_12113488_SNP [dm6]	G	A	6.855e^-5	0.282	INTERGENIC
3L	12106614	3L_12106614_SNP [dm3] 3L_12113514_SNP [dm6]	G	A	6.855e^-5	0.282	INTERGENIC
3L	12106650	3L_12106650_SNP [dm3] 3L_12113550_SNP [dm6]	C	T	6.855e^-5	0.282	INTERGENIC
3L	12109038	3L_12109038_SNP [dm3] 3L_12115938_SNP [dm6]	A	T	6.855e^-5	0.282	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	12109046	3L_12109046_SNP [dm3] 3L_12115946_SNP [dm6]	C	A	6.855e^-5	0.282	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	12109067	3L_12109067_SNP [dm3] 3L_12115967_SNP [dm6]	T	A	6.855e^-5	0.282	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	12109076	3L_12109076_SNP [dm3] 3L_12115976_SNP [dm6]	A	T	6.855e^-5	0.282	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	12109078	3L_12109078_SNP [dm3] 3L_12115978_SNP [dm6]	A	T	6.855e^-5	0.282	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	12109079	3L_12109079_SNP [dm3] 3L_12115979_SNP [dm6]	A	T	6.855e^-5	0.282	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	12109081	3L_12109081_INS [dm3] 3L_12115981_INS [dm6]	A	ATTT	6.855e^-5	0.282	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	12109083	3L_12109083_SNP [dm3] 3L_12115983_SNP [dm6]	C	A	6.855e^-5	0.282	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	12855273	3L_12855273_SNP [dm3] 3L_12862173_SNP [dm6]	C	A	6.855e^-5	0.282	NON_SYNONYMOUS_CODING CG10943 UPSTREAM CG32107
3L	12855278	3L_12855278_SNP [dm3] 3L_12862178_SNP [dm6]	T	G	6.855e^-5	0.282	NON_SYNONYMOUS_CODING CG10943 UPSTREAM CG32107
3L	12855352	3L_12855352_SNP [dm3] 3L_12862252_SNP [dm6]	G	T	6.855e^-5	0.282	NON_SYNONYMOUS_CODING CG10943 UPSTREAM CG32107
3L	12856816	3L_12856816_SNP [dm3] 3L_12863716_SNP [dm6]	T	C	6.855e^-5	0.282	UPSTREAM CG10943 INTERGENIC
3L	12857006	3L_12857006_SNP [dm3] 3L_12863906_SNP [dm6]	T	A	6.855e^-5	0.282	UPSTREAM CG10943 INTERGENIC
3L	13448600	3L_13448600_SNP [dm3] 3L_13455500_SNP [dm6]	G	T	6.855e^-5	0.282	DOWNSTREAM CG10116 INTRON CG10738
3L	13448675	3L_13448675_SNP [dm3] 3L_13455575_SNP [dm6]	A	T	6.855e^-5	0.282	DOWNSTREAM CG10116 INTRON CG10738
3L	14281822	3L_14281822_SNP [dm3] 3L_14288722_SNP [dm6]	A	G	6.855e^-5	0.282	INTRON fz
3L	15863622	3L_15863622_SNP [dm3] 3L_15870522_SNP [dm6]	C	T	6.855e^-5	0.282	SYNONYMOUS_CODING pHCl	TF binding site mE1_TFBS_cad
3L	16027957	3L_16027957_SNP [dm3] 3L_16034857_SNP [dm6]	C	A	6.855e^-5	0.282	UPSTREAM CG5895 DOWNSTREAM CG42716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16027962	3L_16027962_SNP [dm3] 3L_16034862_SNP [dm6]	C	A	6.855e^-5	0.282	UPSTREAM CG5895 DOWNSTREAM CG42716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16760743	3L_16760743_SNP [dm3] 3L_16767643_SNP [dm6]	T	A	6.855e^-5	0.282	INTRON Nrt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16907763	3L_16907763_SNP [dm3] 3L_16914663_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON Lmpt	TF binding site mE1_TFBS_HSA
3L	17578853	3L_17578853_SNP [dm3] 3L_17585753_SNP [dm6]	C	A	6.855e^-5	0.282	INTRON Eip74EF	TF binding site mE1_TFBS_inv
3L	19319024	3L_19319024_SNP [dm3] 3L_19325924_SNP [dm6]	A	G	6.855e^-5	0.282	INTRON pip
3L	20241817	3L_20241817_SNP [dm3] 3L_20248717_SNP [dm6]	A	G	6.855e^-5	0.282	UTR_5_PRIME rdgC INTRON rdgC	TF binding site BDTNP1_TFBS_dl
3L	20253771	3L_20253771_SNP [dm3] 3L_20260671_SNP [dm6]	C	G	6.855e^-5	0.282	INTRON rdgC
3L	20451494	3L_20451494_SNP [dm3] 3L_20458394_SNP [dm6]	A	G	6.855e^-5	0.282	SYNONYMOUS_CODING CG5195	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20623925	3L_20623925_SNP [dm3] 3L_20630825_SNP [dm6]	T	C	6.855e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	2325984	3L_2325984_SNP [dm3] 3L_2325984_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON MsR1
3L	3864955	3L_3864955_INS [dm3] 3L_3864955_INS [dm6]	A	AC	6.855e^-5	0.282	UPSTREAM CR45379 INTERGENIC
3L	3864962	3L_3864962_SNP [dm3] 3L_3864962_SNP [dm6]	A	T	6.855e^-5	0.282	UPSTREAM CR45379 INTERGENIC
3L	3865107	3L_3865107_SNP [dm3] 3L_3865107_SNP [dm6]	G	A	6.855e^-5	0.282	UPSTREAM CR45379 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4209846	3L_4209846_SNP [dm3] 3L_4209846_SNP [dm6]	G	T	6.855e^-5	0.282	UPSTREAM Cpr64Aa INTRON CG43367
3L	4210358	3L_4210358_SNP [dm3] 3L_4210358_SNP [dm6]	G	T	6.855e^-5	0.282	DOWNSTREAM Cpr64Ab INTRON CG43367	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	4210633	3L_4210633_SNP [dm3] 3L_4210633_SNP [dm6]	A	G	6.855e^-5	0.282	DOWNSTREAM Cpr64Ab INTRON CG43367
3L	4210854	3L_4210854_SNP [dm3] 3L_4210854_SNP [dm6]	A	T	6.855e^-5	0.282	DOWNSTREAM Cpr64Ab INTRON CG43367
3L	4211193	3L_4211193_SNP [dm3] 3L_4211193_SNP [dm6]	C	T	6.855e^-5	0.282	SYNONYMOUS_CODING Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4211371	3L_4211371_DEL [dm3] 3L_4211371_DEL [dm6]	TGATTGATTT	T	6.855e^-5	0.282	DOWNSTREAM Cpr64Ac INTRON CG43367 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4211400	3L_4211400_SNP [dm3] 3L_4211400_SNP [dm6]	G	A	6.855e^-5	0.282	DOWNSTREAM Cpr64Ac INTRON CG43367 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4211735	3L_4211735_SNP [dm3] 3L_4211735_SNP [dm6]	T	C	6.855e^-5	0.282	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367
3L	4211791	3L_4211791_SNP [dm3] 3L_4211791_SNP [dm6]	C	T	6.855e^-5	0.282	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367
3L	4211919	3L_4211919_SNP [dm3] 3L_4211919_SNP [dm6]	A	T	6.855e^-5	0.282	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3L	4211930	3L_4211930_SNP [dm3] 3L_4211930_SNP [dm6]	A	T	6.855e^-5	0.282	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3L	4211931	3L_4211931_SNP [dm3] 3L_4211931_SNP [dm6]	C	T	6.855e^-5	0.282	UPSTREAM Cpr64Ab DOWNSTREAM Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad
3L	4212134	3L_4212134_SNP [dm3] 3L_4212134_SNP [dm6]	T	G	6.855e^-5	0.282	UTR_3_PRIME Cpr64Ac UPSTREAM Cpr64Ab INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4212458	3L_4212458_SNP [dm3] 3L_4212458_SNP [dm6]	G	A	6.855e^-5	0.282	SYNONYMOUS_CODING Cpr64Ac UPSTREAM Cpr64Ab INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4212587	3L_4212587_SNP [dm3] 3L_4212587_SNP [dm6]	G	A	6.855e^-5	0.282	SYNONYMOUS_CODING Cpr64Ac INTRON CG43367	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4358546	3L_4358546_SNP [dm3] 3L_4358546_SNP [dm6]	T	C	6.855e^-5	0.282	INTRON Cip4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4613450	3L_4613450_SNP [dm3] 3L_4613450_SNP [dm6]	G	A	6.855e^-5	0.282	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	6154077	3L_6154077_SNP [dm3] 3L_6160977_SNP [dm6]	G	T	6.855e^-5	0.282	NON_SYNONYMOUS_CODING Cpr65Az
3L	8646753	3L_8646753_SNP [dm3] 3L_8653653_SNP [dm6]	G	A	6.855e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8766357	3L_8766357_SNP [dm3] 3L_8773257_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3L	8766416	3L_8766416_SNP [dm3] 3L_8773316_SNP [dm6]	T	C	6.855e^-5	0.282	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3L	8770612	3L_8770612_SNP [dm3] 3L_8777512_SNP [dm6]	C	A	6.855e^-5	0.282	INTRON Fhos
3L	8770677	3L_8770677_DEL [dm3] 3L_8777577_DEL [dm6]	CAGAAAACAAT...	C	6.855e^-5	0.282	INTRON Fhos
3L	8770699	3L_8770699_SNP [dm3] 3L_8777599_SNP [dm6]	T	C	6.855e^-5	0.282	INTRON Fhos
3L	8770700	3L_8770700_SNP [dm3] 3L_8777600_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON Fhos
3L	8770703	3L_8770703_SNP [dm3] 3L_8777603_SNP [dm6]	T	C	6.855e^-5	0.282	INTRON Fhos
3L	8839331	3L_8839331_DEL [dm3] 3L_8846231_DEL [dm6]	AGACAGCATTAAATTGGCTC...	A	6.855e^-5	0.282	INTRON dally
3L	8839364	3L_8839364_SNP [dm3] 3L_8846264_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON dally
3L	9208723	3L_9208723_SNP [dm3] 3L_9215623_SNP [dm6]	C	T	6.855e^-5	0.282	DOWNSTREAM CG4476 INTERGENIC
3L	9341450	3L_9341450_SNP [dm3] 3L_9348350_SNP [dm6]	C	T	6.855e^-5	0.282	DOWNSTREAM PGRP-LC INTERGENIC
3L	968074	3L_968074_SNP [dm3] 3L_968074_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON Glut1
3L	9861062	3L_9861062_SNP [dm3] 3L_9867962_SNP [dm6]	T	C	6.855e^-5	0.282	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13232548	3R_13232548_SNP [dm3] 3R_17406826_SNP [dm6]	T	G	6.855e^-5	0.282	UPSTREAM CG42798 & 1 other INTRON CG42798
3R	13797375	3R_13797375_SNP [dm3] 3R_17971653_SNP [dm6]	A	G	6.855e^-5	0.282	INTRON cpo
3R	13797439	3R_13797439_SNP [dm3] 3R_17971717_SNP [dm6]	A	T	6.855e^-5	0.282	INTRON cpo
3R	13797518	3R_13797518_SNP [dm3] 3R_17971796_SNP [dm6]	G	C	6.855e^-5	0.282	INTRON cpo
3R	13823725	3R_13823725_SNP [dm3] 3R_17998003_SNP [dm6]	C	A	6.855e^-5	0.282	INTRON cpo	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13868871	3R_13868871_SNP [dm3] 3R_18043149_SNP [dm6]	C	G	6.855e^-5	0.282	INTERGENIC
3R	13868880	3R_13868880_SNP [dm3] 3R_18043158_SNP [dm6]	G	A	6.855e^-5	0.282	INTERGENIC
3R	13883241	3R_13883241_SNP [dm3] 3R_18057519_SNP [dm6]	A	G	6.855e^-5	0.282	INTERGENIC
3R	13886545	3R_13886545_SNP [dm3] 3R_18060823_SNP [dm6]	G	A	6.855e^-5	0.282	INTERGENIC
3R	13886573	3R_13886573_SNP [dm3] 3R_18060851_SNP [dm6]	T	C	6.855e^-5	0.282	INTERGENIC
3R	13886575	3R_13886575_SNP [dm3] 3R_18060853_SNP [dm6]	G	T	6.855e^-5	0.282	INTERGENIC
3R	13886579	3R_13886579_SNP [dm3] 3R_18060857_SNP [dm6]	C	A	6.855e^-5	0.282	INTERGENIC
3R	13889232	3R_13889232_SNP [dm3] 3R_18063510_SNP [dm6]	G	T	6.855e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	8954375	3R_8954375_SNP [dm3] 3R_13128653_SNP [dm6]	C	A	6.855e^-5	0.282	INTRON timeout & 1 other
3R	8960273	3R_8960273_SNP [dm3] 3R_13134551_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON timeout & 2 others
3R	8960669	3R_8960669_SNP [dm3] 3R_13134947_SNP [dm6]	A	G	6.855e^-5	0.282	INTRON timeout & 2 others
3R	8960679	3R_8960679_SNP [dm3] 3R_13134957_SNP [dm6]	A	T	6.855e^-5	0.282	INTRON timeout & 2 others
3R	8960769	3R_8960769_SNP [dm3] 3R_13135047_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON timeout & 2 others
3R	8964048	3R_8964048_SNP [dm3] 3R_13138326_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON timeout & 2 others
3R	8985857	3R_8985857_SNP [dm3] 3R_13160135_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON timeout
3R	8989872	3R_8989872_SNP [dm3] 3R_13164150_SNP [dm6]	A	T	6.855e^-5	0.282	DOWNSTREAM timeout INTERGENIC
3R	8990999	3R_8990999_SNP [dm3] 3R_13165277_SNP [dm6]	C	T	6.855e^-5	0.282	INTERGENIC
3R	8992098	3R_8992098_SNP [dm3] 3R_13166376_SNP [dm6]	G	T	6.855e^-5	0.282	INTERGENIC
3R	8993589	3R_8993589_SNP [dm3] 3R_13167867_SNP [dm6]	C	G	6.855e^-5	0.282	INTERGENIC
3R	9651884	3R_9651884_SNP [dm3] 3R_13826162_SNP [dm6]	T	A	6.855e^-5	0.282	DOWNSTREAM Mst87F INTERGENIC
X	10394452	X_10394452_SNP [dm3] X_10500419_SNP [dm6]	A	T	6.855e^-5	0.282	INTRON spri
X	1188363	X_1188363_SNP [dm3] X_1294330_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON DAAM	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12006292	X_12006292_SNP [dm3] X_12112259_SNP [dm6]	G	T	6.855e^-5	0.282	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
X	12850264	X_12850264_SNP [dm3] X_12956231_SNP [dm6]	A	G	6.855e^-5	0.282	INTRON hec	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12850267	X_12850267_SNP [dm3] X_12956234_SNP [dm6]	A	G	6.855e^-5	0.282	INTRON hec	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13534957	X_13534957_SNP [dm3] X_13640924_SNP [dm6]	A	G	6.855e^-5	0.282	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14118009	X_14118009_SNP [dm3] X_14223976_SNP [dm6]	T	A	6.855e^-5	0.282	DOWNSTREAM CG11674 INTRON l_1_G0007	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16029337	X_16029337_SNP [dm3] X_16135304_SNP [dm6]	A	G	6.855e^-5	0.282	INTRON disco-r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16029354	X_16029354_SNP [dm3] X_16135321_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON disco-r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	17057139	X_17057139_SNP [dm3] X_17163106_SNP [dm6]	T	C	6.855e^-5	0.282	INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17340702	X_17340702_SNP [dm3] X_17446669_SNP [dm6]	T	A	6.855e^-5	0.282	NON_SYNONYMOUS_CODING p-cup
X	19443880	X_19443880_SNP [dm3] X_19549847_SNP [dm6]	A	T	6.855e^-5	0.282	INTERGENIC
X	19521061	X_19521061_SNP [dm3] X_19627028_SNP [dm6]	T	G	6.855e^-5	0.282	UTR_3_PRIME e_y_3 DOWNSTREAM CG14212 & 1 other
X	19764777	X_19764777_SNP [dm3] X_19870744_SNP [dm6]	G	T	6.855e^-5	0.282	NON_SYNONYMOUS_CODING Hers	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	19778094	X_19778094_SNP [dm3] X_19884061_SNP [dm6]	C	A	6.855e^-5	0.282	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	19778477	X_19778477_SNP [dm3] X_19884444_SNP [dm6]	A	T	6.855e^-5	0.282	INTRON Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Trl
X	2921414	X_2921414_SNP [dm3] X_3027381_SNP [dm6]	T	C	6.855e^-5	0.282	INTRON kirre	TF binding site BDTNP1_TFBS_dl
X	3298014	X_3298014_SNP [dm3] X_3403981_SNP [dm6]	T	C	6.855e^-5	0.282	INTRON CR44999 & 1 other
X	3298024	X_3298024_SNP [dm3] X_3403991_SNP [dm6]	A	T	6.855e^-5	0.282	INTRON CR44999 & 1 other
X	3298040	X_3298040_SNP [dm3] X_3404007_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON CR44999 & 1 other
X	3565750	X_3565750_SNP [dm3] X_3671717_SNP [dm6]	A	C	6.855e^-5	0.282	UPSTREAM Mnt & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	3566060	X_3566060_SNP [dm3] X_3672027_SNP [dm6]	A	G	6.855e^-5	0.282	START_GAINED Mnt UTR_5_PRIME Mnt UPSTREAM Parg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	3567187	X_3567187_SNP [dm3] X_3673154_SNP [dm6]	C	T	6.855e^-5	0.282	INTRON Mnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3567708	X_3567708_SNP [dm3] X_3673675_SNP [dm6]	G	C	6.855e^-5	0.282	INTRON Mnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3567828	X_3567828_SNP [dm3] X_3673795_SNP [dm6]	A	G	6.855e^-5	0.282	INTRON Mnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3567844	X_3567844_SNP [dm3] X_3673811_SNP [dm6]	G	A	6.855e^-5	0.282	INTRON Mnt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6968127	X_6968127_SNP [dm3] X_7074094_SNP [dm6]	G	T	6.855e^-5	0.282	DOWNSTREAM Sxl INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
X	6968141	X_6968141_SNP [dm3] X_7074108_SNP [dm6]	T	G	6.855e^-5	0.282	DOWNSTREAM Sxl INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
X	6968187	X_6968187_INS [dm3] X_7074154_INS [dm6]	A	ACAAAGTAGATA...	6.855e^-5	0.282	DOWNSTREAM Sxl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
X	9110211	X_9110211_SNP [dm3] X_9216178_SNP [dm6]	A	G	6.855e^-5	0.282	SYNONYMOUS_CODING CG15368 UPSTREAM CG15369 DOWNSTREAM Obp8a
2L	11431093	2L_11431093_SNP [dm3] 2L_11431093_SNP [dm6]	C	A	6.947e^-5	0.282	INTERGENIC
X	7505156	X_7505156_SNP [dm3] X_7611123_SNP [dm6]	T	G	6.947e^-5	0.282	INTRON ct
2R	17965209	2R_17965209_SNP [dm3] 2R_22077704_SNP [dm6]	T	C	7.018e^-5	0.282	UTR_3_PRIME GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7150165	2R_7150165_SNP [dm3] 2R_11262660_SNP [dm6]	T	C	7.035e^-5	0.282	UPSTREAM Cpr47Ed INTERGENIC
2L	12661072	2L_12661072_SNP [dm3] 2L_12661072_SNP [dm6]	A	G	7.039e^-5	0.282	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	1048608	2L_1048608_SNP [dm3] 2L_1048608_SNP [dm6]	T	A	7.049e^-5	0.282	UPSTREAM IA-2 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1048628	2L_1048628_SNP [dm3] 2L_1048628_SNP [dm6]	C	G	7.049e^-5	0.282	UPSTREAM IA-2 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1048640	2L_1048640_SNP [dm3] 2L_1048640_SNP [dm6]	T	A	7.049e^-5	0.282	UPSTREAM IA-2 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	1048641	2L_1048641_SNP [dm3] 2L_1048641_SNP [dm6]	C	G	7.049e^-5	0.282	UPSTREAM IA-2 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14436180	2L_14436180_SNP [dm3] 2L_14436180_SNP [dm6]	C	T	7.049e^-5	0.282	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	16447667	2L_16447667_SNP [dm3] 2L_16447667_SNP [dm6]	T	A	7.049e^-5	0.282	DOWNSTREAM Idgf1 INTRON CG5888 & 1 other
2L	17447765	2L_17447765_SNP [dm3] 2L_17447765_SNP [dm6]	A	C	7.049e^-5	0.282	INTRON dl
2R	7934033	2R_7934033_SNP [dm3] 2R_12046528_SNP [dm6]	G	A	7.049e^-5	0.282	INTRON Drep-1
2R	7934084	2R_7934084_SNP [dm3] 2R_12046579_SNP [dm6]	T	C	7.049e^-5	0.282	INTRON Drep-1
2R	7934108	2R_7934108_SNP [dm3] 2R_12046603_SNP [dm6]	A	G	7.049e^-5	0.282	INTRON Drep-1
2R	7956213	2R_7956213_SNP [dm3] 2R_12068708_SNP [dm6]	G	A	7.049e^-5	0.282	INTRON CG8888
3R	20673040	3R_20673040_SNP [dm3] 3R_24847318_SNP [dm6]	C	A	7.049e^-5	0.282	SYNONYMOUS_CODING Esp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20344044	X_20344044_SNP [dm3] X_20473017_SNP [dm6]	T	A	7.070e^-5	0.282	NON_SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_chinmo
2R	3742392	2R_3742392_DEL [dm3] 2R_7854887_DEL [dm6]	AAA	A	7.194e^-5	0.282	INTRON Dgk
2L	8331990	2L_8331990_SNP [dm3] 2L_8331990_SNP [dm6]	G	A	7.209e^-5	0.282	INTRON CG14275
2L	11485318	2L_11485318_SNP [dm3] 2L_11485318_SNP [dm6]	G	A	7.213e^-5	0.282	NON_SYNONYMOUS_CODING CG43355 UTR_5_PRIME sala UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11871446	2R_11871446_SNP [dm3] 2R_15983941_SNP [dm6]	G	A	7.213e^-5	0.282	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11873703	2R_11873703_DEL [dm3] 2R_15986198_DEL [dm6]	ACAAA	A	7.213e^-5	0.282	INTRON Strn-Mlck
3R	15409398	3R_15409398_SNP [dm3] 3R_19583676_SNP [dm6]	G	T	7.213e^-5	0.282	INTRON Dys
2L	8705566	2L_8705566_SNP [dm3] 2L_8705566_SNP [dm6]	G	A	7.239e^-5	0.282	UPSTREAM CG9314 DOWNSTREAM CR44992 INTRON Hnf4
2L	11574551	2L_11574551_SNP [dm3] 2L_11574551_SNP [dm6]	G	C	7.242e^-5	0.282	INTERGENIC
3R	20936451	3R_20936451_SNP [dm3] 3R_25110729_SNP [dm6]	G	C	7.287e^-5	0.282	INTRON CG13650
3R	20936454	3R_20936454_SNP [dm3] 3R_25110732_SNP [dm6]	T	A	7.287e^-5	0.282	INTRON CG13650
3R	20936457	3R_20936457_SNP [dm3] 3R_25110735_SNP [dm6]	T	G	7.287e^-5	0.282	SPLICE_SITE_REGION CG13650 INTRON CG13650
2L	9996381	2L_9996381_SNP [dm3] 2L_9996381_SNP [dm6]	T	C	7.338e^-5	0.282	SYNONYMOUS_CODING CG31875 DOWNSTREAM bib & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10777460	2L_10777460_SNP [dm3] 2L_10777460_SNP [dm6]	A	C	7.399e^-5	0.282	INTRON CG31869
3R	16343706	3R_16343706_SNP [dm3] 3R_20517984_SNP [dm6]	A	T	7.404e^-5	0.282	INTERGENIC
2L	5472869	2L_5472869_SNP [dm3] 2L_5472869_SNP [dm6]	A	C	7.444e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16049394	2R_16049394_SNP [dm3] 2R_20161889_SNP [dm6]	G	T	7.444e^-5	0.282	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17734341	2R_17734341_SNP [dm3] 2R_21846836_SNP [dm6]	T	C	7.444e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	7157296	2R_7157296_SNP [dm3] 2R_11269791_SNP [dm6]	G	T	7.444e^-5	0.282	SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo
2R	7159173	2R_7159173_SNP [dm3] 2R_11271668_SNP [dm6]	T	A	7.444e^-5	0.282	INTRON Cpr47Ef
2R	7653531	2R_7653531_SNP [dm3] 2R_11766026_SNP [dm6]	A	T	7.444e^-5	0.282	INTRON ths
3L	12062552	3L_12062552_SNP [dm3] 3L_12069452_SNP [dm6]	A	G	7.444e^-5	0.282	SYNONYMOUS_CODING Sema-5c	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12063491	3L_12063491_SNP [dm3] 3L_12070391_SNP [dm6]	T	G	7.444e^-5	0.282	SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12099487	3L_12099487_SNP [dm3] 3L_12106387_SNP [dm6]	G	A	7.444e^-5	0.282	INTERGENIC
3L	12109054	3L_12109054_SNP [dm3] 3L_12115954_SNP [dm6]	C	T	7.444e^-5	0.282	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	16760733	3L_16760733_SNP [dm3] 3L_16767633_SNP [dm6]	A	C	7.444e^-5	0.282	INTRON Nrt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17244751	3L_17244751_SNP [dm3] 3L_17251651_SNP [dm6]	A	G	7.444e^-5	0.282	DOWNSTREAM CG6497 INTRON CR43870
3L	17836502	3L_17836502_SNP [dm3] 3L_17843402_SNP [dm6]	G	A	7.444e^-5	0.282	SYNONYMOUS_CODING CG5567 DOWNSTREAM CR45175 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17838600	3L_17838600_DEL [dm3] 3L_17845500_DEL [dm6]	GGTGATTATAGAAATAA...	G	7.444e^-5	0.282	INTRON MED19	TF binding site BDTNP1_TFBS_dl
3L	17838704	3L_17838704_SNP [dm3] 3L_17845604_SNP [dm6]	A	G	7.444e^-5	0.282	INTRON MED19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17847030	3L_17847030_SNP [dm3] 3L_17853930_SNP [dm6]	G	C	7.444e^-5	0.282	NON_SYNONYMOUS_CODING CG5535	TF binding site BDTNP1_TFBS_prd
3L	17849754	3L_17849754_SNP [dm3] 3L_17856654_SNP [dm6]	C	G	7.444e^-5	0.282	NON_SYNONYMOUS_CODING CG5535 UPSTREAM CG5535	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17851238	3L_17851238_SNP [dm3] 3L_17858138_SNP [dm6]	T	C	7.444e^-5	0.282	UPSTREAM CG34002 INTERGENIC
3L	17873203	3L_17873203_SNP [dm3] 3L_17880103_SNP [dm6]	C	G	7.444e^-5	0.282	INTRON CG7408
3L	17936530	3L_17936530_DEL [dm3] 3L_17943430_DEL [dm6]	ATTTTTGCTAGAACA...	A	7.444e^-5	0.282	INTRON CG43174
3L	17936935	3L_17936935_SNP [dm3] 3L_17943835_SNP [dm6]	T	G	7.444e^-5	0.282	INTRON CG43174
3L	18192559	3L_18192559_SNP [dm3] 3L_18199459_SNP [dm6]	G	A	7.444e^-5	0.282	INTERGENIC
3L	4356794	3L_4356794_SNP [dm3] 3L_4356794_SNP [dm6]	C	T	7.444e^-5	0.282	INTRON Cip4
3L	739713	3L_739713_SNP [dm3] 3L_739713_SNP [dm6]	C	T	7.444e^-5	0.282	UPSTREAM hng3 INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13817022	3R_13817022_SNP [dm3] 3R_17991300_SNP [dm6]	A	T	7.444e^-5	0.282	INTRON cpo
3R	13817027	3R_13817027_SNP [dm3] 3R_17991305_SNP [dm6]	G	A	7.444e^-5	0.282	INTRON cpo
3R	13890349	3R_13890349_SNP [dm3] 3R_18064627_SNP [dm6]	C	T	7.444e^-5	0.282	INTERGENIC
3R	13890362	3R_13890362_SNP [dm3] 3R_18064640_SNP [dm6]	G	A	7.444e^-5	0.282	INTERGENIC
3R	5745003	3R_5745003_SNP [dm3] 3R_9919281_SNP [dm6]	G	A	7.444e^-5	0.282	INTRON Glut4EF
3R	8985230	3R_8985230_SNP [dm3] 3R_13159508_SNP [dm6]	T	C	7.444e^-5	0.282	INTRON timeout
X	13673881	X_13673881_SNP [dm3] X_13779848_SNP [dm6]	A	G	7.444e^-5	0.282	UTR_3_PRIME CtsB1 DOWNSTREAM CtsB1 & 1 other	TF binding site BDTNP1_TFBS_dl
X	3566042	X_3566042_SNP [dm3] X_3672009_SNP [dm6]	A	G	7.444e^-5	0.282	UTR_5_PRIME Mnt UPSTREAM Parg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	6903333	X_6903333_SNP [dm3] X_7009300_SNP [dm6]	A	G	7.444e^-5	0.282	UTR_3_PRIME cm DOWNSTREAM cm INTRON Inx7
X	6968287	X_6968287_SNP [dm3] X_7074254_SNP [dm6]	C	A	7.444e^-5	0.282	DOWNSTREAM Sxl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4829076	3L_4829076_INS [dm3] 3L_4829076_INS [dm6]	T	TCA	7.475e^-5	0.282	DOWNSTREAM CG13708 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	14948227	X_14948227_SNP [dm3] X_15054194_SNP [dm6]	G	A	7.483e^-5	0.282	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16309816	3R_16309816_SNP [dm3] 3R_20484094_SNP [dm6]	C	G	7.485e^-5	0.282	UTR_5_PRIME Gfrl
2L	9724254	2L_9724254_SNP [dm3] 2L_9724254_SNP [dm6]	A	T	7.550e^-5	0.282	INTRON Nckx30C
2L	4044114	2L_4044114_DEL [dm3] 2L_4044114_DEL [dm6]	TT	T	7.563e^-5	0.282	INTRON ed
2R	12793263	2R_12793263_SNP [dm3] 2R_16905758_SNP [dm6]	T	A	7.596e^-5	0.282	INTERGENIC
2R	12793344	2R_12793344_SNP [dm3] 2R_16905839_SNP [dm6]	G	A	7.596e^-5	0.282	INTERGENIC
X	16401262	X_16401262_SNP [dm3] X_16507229_SNP [dm6]	C	A	7.596e^-5	0.282	INTRON para
2L	15799269	2L_15799269_SNP [dm3] 2L_15799269_SNP [dm6]	G	A	7.626e^-5	0.282	INTERGENIC
2L	4062681	2L_4062681_SNP [dm3] 2L_4062681_SNP [dm6]	C	T	7.626e^-5	0.282	INTRON ed
2R	10519170	2R_10519170_SNP [dm3] 2R_14631665_SNP [dm6]	G	A	7.626e^-5	0.282	DOWNSTREAM CG10131 INTERGENIC
2R	10573933	2R_10573933_SNP [dm3] 2R_14686428_SNP [dm6]	A	T	7.626e^-5	0.282	INTRON mspo
2R	13726936	2R_13726936_SNP [dm3] 2R_17839431_SNP [dm6]	C	T	7.626e^-5	0.282	SYNONYMOUS_CODING grh
2R	14743275	2R_14743275_SNP [dm3] 2R_18855770_SNP [dm6]	T	G	7.626e^-5	0.282	UTR_3_PRIME Jheh2 UPSTREAM Jheh1
2R	20214225	2R_20214225_SNP [dm3] 2R_24326702_SNP [dm6]	T	G	7.626e^-5	0.282	INTRON CR44810
2R	20214846	2R_20214846_SNP [dm3] 2R_24327323_SNP [dm6]	A	T	7.626e^-5	0.282	INTRON CR44810
2R	5336218	2R_5336218_SNP [dm3] 2R_9448713_SNP [dm6]	C	T	7.626e^-5	0.282	INTRON Camta	TF binding site mE1_TFBS_HSA
2R	5336223	2R_5336223_SNP [dm3] 2R_9448718_SNP [dm6]	C	G	7.626e^-5	0.282	INTRON Camta	TF binding site mE1_TFBS_HSA
2R	8254565	2R_8254565_SNP [dm3] 2R_12367060_SNP [dm6]	C	A	7.626e^-5	0.282	UPSTREAM CG33012 DOWNSTREAM CR33013 INTERGENIC
3R	13791626	3R_13791626_SNP [dm3] 3R_17965904_SNP [dm6]	C	T	7.626e^-5	0.282	INTRON cpo
3R	13794353	3R_13794353_SNP [dm3] 3R_17968631_SNP [dm6]	G	A	7.626e^-5	0.282	INTRON cpo
3R	13794364	3R_13794364_SNP [dm3] 3R_17968642_SNP [dm6]	G	A	7.626e^-5	0.282	INTRON cpo
3R	13794833	3R_13794833_SNP [dm3] 3R_17969111_SNP [dm6]	A	G	7.626e^-5	0.282	INTRON cpo
X	10978276	X_10978276_SNP [dm3] X_11084243_SNP [dm6]	C	T	7.626e^-5	0.282	UTR_5_PRIME sev	TF binding site mE1_TFBS_chinmo
X	12445868	X_12445868_SNP [dm3] X_12551835_SNP [dm6]	T	C	7.626e^-5	0.282	INTRON CG43921
X	19777105	X_19777105_SNP [dm3] X_19883072_SNP [dm6]	T	A	7.626e^-5	0.282	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	696322	2L_696322_SNP [dm3] 2L_696322_SNP [dm6]	A	C	7.652e^-5	0.282	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8441022	2R_8441022_SNP [dm3] 2R_12553517_SNP [dm6]	T	A	7.652e^-5	0.282	INTRON fra
3L	15382619	3L_15382619_SNP [dm3] 3L_15389519_SNP [dm6]	G	C	7.652e^-5	0.282	INTERGENIC
3R	21350720	3R_21350720_SNP [dm3] 3R_25524998_SNP [dm6]	C	A	7.652e^-5	0.282	INTRON msi
X	18188969	X_18188969_SNP [dm3] X_18294936_SNP [dm6]	C	T	7.703e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11230008	2L_11230008_DEL [dm3] 2L_11230008_DEL [dm6]	GTATG	G	7.737e^-5	0.282	INTRON ab
2R	14754391	2R_14754391_SNP [dm3] 2R_18866886_SNP [dm6]	A	T	7.737e^-5	0.282	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
2R	14754402	2R_14754402_SNP [dm3] 2R_18866897_SNP [dm6]	T	C	7.737e^-5	0.282	UPSTREAM DptB DOWNSTREAM Dpt & 1 other INTERGENIC
3R	8983746	3R_8983746_SNP [dm3] 3R_13158024_SNP [dm6]	C	T	7.737e^-5	0.282	SYNONYMOUS_CODING timeout
3R	9001310	3R_9001310_SNP [dm3] 3R_13175588_SNP [dm6]	G	A	7.737e^-5	0.282	INTERGENIC
3R	9003655	3R_9003655_SNP [dm3] 3R_13177933_SNP [dm6]	G	A	7.737e^-5	0.282	INTERGENIC
2R	12333456	2R_12333456_SNP [dm3] 2R_16445951_SNP [dm6]	C	T	7.743e^-5	0.282	UPSTREAM CG15925 INTERGENIC
2L	9680356	2L_9680356_SNP [dm3] 2L_9680356_SNP [dm6]	C	G	7.796e^-5	0.282	INTERGENIC
2R	12301245	2R_12301245_DEL [dm3] 2R_16413740_DEL [dm6]	TTT	T	7.862e^-5	0.282	INTRON Sema-2b
2R	12305000	2R_12305000_SNP [dm3] 2R_16417495_SNP [dm6]	G	A	7.862e^-5	0.282	SYNONYMOUS_CODING Menl-1 UTR_5_PRIME Menl-2 UPSTREAM Menl-2 INTRON Sema-2b
2R	12305080	2R_12305080_SNP [dm3] 2R_16417575_SNP [dm6]	C	A	7.862e^-5	0.282	NON_SYNONYMOUS_CODING Menl-1 UTR_5_PRIME Menl-2 UPSTREAM Menl-2 INTRON Sema-2b
3L	11534301	3L_11534301_DEL [dm3] 3L_11541201_DEL [dm6]	AA	A	7.862e^-5	0.282	INTRON Mob2
3L	17937918	3L_17937918_SNP [dm3] 3L_17944818_SNP [dm6]	G	T	7.862e^-5	0.282	INTRON CG43174
3R	3635786	3R_3635786_SNP [dm3] 3R_7810064_SNP [dm6]	T	A	7.862e^-5	0.282	UPSTREAM CG31472 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	2392200	X_2392200_SNP [dm3] X_2498167_SNP [dm6]	C	T	7.862e^-5	0.282	INTRON trol
X	18723537	X_18723537_SNP [dm3] X_18829504_SNP [dm6]	T	C	7.908e^-5	0.282	UTR_3_PRIME CG42450
3L	3862966	3L_3862966_SNP [dm3] 3L_3862966_SNP [dm6]	C	G	7.955e^-5	0.282	DOWNSTREAM CR45379 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	12661068	2L_12661068_SNP [dm3] 2L_12661068_SNP [dm6]	C	T	8.215e^-5	0.282	INTRON pdm2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	12192179	2L_12192179_SNP [dm3] 2L_12192179_SNP [dm6]	A	C	8.283e^-5	0.282	INTRON aret
2L	8842346	2L_8842346_SNP [dm3] 2L_8842346_SNP [dm6]	G	T	8.283e^-5	0.282	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	8842605	2L_8842605_SNP [dm3] 2L_8842605_SNP [dm6]	T	C	8.283e^-5	0.282	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12488830	2L_12488830_DEL [dm3] 2L_12488830_DEL [dm6]	TT	T	8.327e^-5	0.282	INTRON bun	TF binding site BDTNP1_TFBS_twi
2L	18506612	2L_18506612_SNP [dm3] 2L_18506612_SNP [dm6]	C	A	8.371e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12060330	3L_12060330_SNP [dm3] 3L_12067230_SNP [dm6]	C	T	8.371e^-5	0.282	DOWNSTREAM Sema-5c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	15056138	3L_15056138_SNP [dm3] 3L_15063038_SNP [dm6]	G	C	8.371e^-5	0.282	UPSTREAM CR43684 INTRON Sytbeta
3R	13868847	3R_13868847_SNP [dm3] 3R_18043125_SNP [dm6]	T	C	8.371e^-5	0.282	INTERGENIC
X	13524792	X_13524792_INS [dm3] X_13630759_INS [dm6]	G	GCG	8.371e^-5	0.282	INTRON NFAT
X	14072187	X_14072187_DEL [dm3] X_14178154_DEL [dm6]	AA	A	8.371e^-5	0.282	UTR_3_PRIME CG11581 DOWNSTREAM CG11581
X	16602183	X_16602183_SNP [dm3] X_16708150_SNP [dm6]	T	C	8.371e^-5	0.282	INTRON CG4678
X	19443877	X_19443877_SNP [dm3] X_19549844_SNP [dm6]	A	T	8.371e^-5	0.282	INTERGENIC
X	3565821	X_3565821_SNP [dm3] X_3671788_SNP [dm6]	T	C	8.371e^-5	0.282	UPSTREAM Mnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	12619410	2L_12619410_SNP [dm3] 2L_12619410_SNP [dm6]	A	T	8.417e^-5	0.282	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	7324006	3L_7324006_SNP [dm3] 3L_7330906_SNP [dm6]	A	T	8.417e^-5	0.282	SYNONYMOUS_CODING mus312 UTR_3_PRIME CG42307	TF binding site mE1_TFBS_cad
3R	2478144	3R_2478144_SNP [dm3] 3R_6652422_SNP [dm6]	C	A	8.417e^-5	0.282	SYNONYMOUS_CODING Taf1
3R	2483266	3R_2483266_SNP [dm3] 3R_6657544_SNP [dm6]	A	T	8.417e^-5	0.282	UPSTREAM twr & 1 other INTRON CG1307	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
3R	2483411	3R_2483411_SNP [dm3] 3R_6657689_SNP [dm6]	G	A	8.417e^-5	0.282	UPSTREAM twr & 1 other INTRON CG1307	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2483413	3R_2483413_SNP [dm3] 3R_6657691_SNP [dm6]	C	T	8.417e^-5	0.282	UPSTREAM twr & 1 other INTRON CG1307	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2484586	3R_2484586_SNP [dm3] 3R_6658864_SNP [dm6]	G	A	8.417e^-5	0.282	DOWNSTREAM agt INTRON twr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
2R	4919697	2R_4919697_SNP [dm3] 2R_9032192_SNP [dm6]	G	C	8.434e^-5	0.282	INTERGENIC
2R	4919713	2R_4919713_SNP [dm3] 2R_9032208_SNP [dm6]	G	A	8.434e^-5	0.282	INTERGENIC
2L	10247078	2L_10247078_SNP [dm3] 2L_10247078_SNP [dm6]	G	A	8.592e^-5	0.282	START_GAINED chico UTR_5_PRIME chico DOWNSTREAM bsk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
2L	18506585	2L_18506585_SNP [dm3] 2L_18506585_SNP [dm6]	C	T	8.592e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9607020	2R_9607020_SNP [dm3] 2R_13719515_SNP [dm6]	C	A	8.592e^-5	0.282	INTRON fas
3L	15920784	3L_15920784_SNP [dm3] 3L_15927684_SNP [dm6]	T	C	8.592e^-5	0.282	INTRON Pka-C3
3R	953132	3R_953132_SNP [dm3] 3R_5127410_SNP [dm6]	T	C	8.592e^-5	0.282	UPSTREAM CG12007 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	954009	3R_954009_SNP [dm3] 3R_5128287_SNP [dm6]	G	A	8.592e^-5	0.282	SYNONYMOUS_CODING CG12007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	6183250	X_6183250_SNP [dm3] X_6289217_SNP [dm6]	A	T	8.592e^-5	0.282	NON_SYNONYMOUS_CODING wuho DOWNSTREAM Rpt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	16447489	2L_16447489_SNP [dm3] 2L_16447489_SNP [dm6]	G	A	8.623e^-5	0.282	SYNONYMOUS_CODING Idgf2 UTR_5_PRIME Idgf2 DOWNSTREAM Idgf1 INTRON CG5888
2L	16388614	2L_16388614_SNP [dm3] 2L_16388614_SNP [dm6]	A	G	8.640e^-5	0.282	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16388617	2L_16388617_SNP [dm3] 2L_16388617_SNP [dm6]	A	G	8.640e^-5	0.282	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8842665	2L_8842665_SNP [dm3] 2L_8842665_SNP [dm6]	T	G	8.667e^-5	0.282	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8842690	2L_8842690_SNP [dm3] 2L_8842690_SNP [dm6]	C	T	8.667e^-5	0.282	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7818181	3L_7818181_SNP [dm3] 3L_7825081_SNP [dm6]	A	C	8.667e^-5	0.282	INTRON Pdp1
2L	16386500	2L_16386500_SNP [dm3] 2L_16386500_SNP [dm6]	T	C	8.740e^-5	0.282	INTERGENIC
2R	761437	2R_761437_SNP [dm3] 2R_4873932_SNP [dm6]	A	T	8.768e^-5	0.282	INTERGENIC	transposable element FlyBase
3L	7738982	3L_7738982_SNP [dm3] 3L_7745882_SNP [dm6]	G	A	8.776e^-5	0.282	INTRON CG32373
X	17350043	X_17350043_SNP [dm3] X_17456010_SNP [dm6]	G	A	8.776e^-5	0.282	DOWNSTREAM CG43658 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13103706	2L_13103706_SNP [dm3] 2L_13103706_SNP [dm6]	T	A	8.776e^-5	0.282	UPSTREAM CR45461 INTERGENIC
2R	16279056	2R_16279056_SNP [dm3] 2R_20391551_SNP [dm6]	C	T	8.809e^-5	0.282	INTERGENIC
3L	7817175	3L_7817175_SNP [dm3] 3L_7824075_SNP [dm6]	A	T	8.829e^-5	0.282	INTRON Pdp1
2R	19548959	2R_19548959_SNP [dm3] 2R_23661436_SNP [dm6]	A	C	8.871e^-5	0.282	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	332273	2L_332273_SNP [dm3] 2L_332273_SNP [dm6]	T	A	9.017e^-5	0.282	START_GAINED CG31921 UTR_5_PRIME CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad
3R	26041510	3R_26041510_DEL [dm3] 3R_30215788_DEL [dm6]	TCT	T	9.028e^-5	0.282	UPSTREAM CecC INTERGENIC
X	3369952	X_3369952_SNP [dm3] X_3475919_SNP [dm6]	C	T	9.090e^-5	0.282	DOWNSTREAM CG10804 INTRON CR44999	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2L	1048462	2L_1048462_SNP [dm3] 2L_1048462_SNP [dm6]	T	C	9.108e^-5	0.282	UPSTREAM IA-2 INTERGENIC
2L	1048463	2L_1048463_DEL [dm3] 2L_1048463_DEL [dm6]	AATAATTATATCTATT...	A	9.108e^-5	0.282	UPSTREAM IA-2 INTERGENIC
2L	14537605	2L_14537605_SNP [dm3] 2L_14537605_SNP [dm6]	C	T	9.176e^-5	0.282	INTERGENIC	TF binding site mE1_TFBS_Ubx
2L	14537618	2L_14537618_SNP [dm3] 2L_14537618_SNP [dm6]	T	A	9.176e^-5	0.282	INTERGENIC	TF binding site mE1_TFBS_Ubx
3R	13887146	3R_13887146_SNP [dm3] 3R_18061424_SNP [dm6]	G	C	9.217e^-5	0.282	INTERGENIC
3L	12076489	3L_12076489_SNP [dm3] 3L_12083389_SNP [dm6]	G	A	9.255e^-5	0.282	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11908993	2R_11908993_SNP [dm3] 2R_16021488_SNP [dm6]	A	G	9.270e^-5	0.282	INTRON CG8399
3L	17839575	3L_17839575_SNP [dm3] 3L_17846475_SNP [dm6]	T	C	9.270e^-5	0.282	UTR_5_PRIME MED19 UPSTREAM CG7430	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17925519	3L_17925519_SNP [dm3] 3L_17932419_SNP [dm6]	A	T	9.270e^-5	0.282	INTERGENIC
2R	11746940	2R_11746940_SNP [dm3] 2R_15859435_SNP [dm6]	A	G	9.280e^-5	0.282	SYNONYMOUS_CODING Gpo-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18058325	2R_18058325_SNP [dm3] 2R_22170820_SNP [dm6]	T	C	9.280e^-5	0.282	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18060632	2R_18060632_SNP [dm3] 2R_22173127_SNP [dm6]	A	G	9.280e^-5	0.282	SYNONYMOUS_CODING CG3045 DOWNSTREAM a
2R	18060934	2R_18060934_SNP [dm3] 2R_22173429_SNP [dm6]	G	C	9.280e^-5	0.282	NON_SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
2R	18061291	2R_18061291_SNP [dm3] 2R_22173786_SNP [dm6]	C	A	9.280e^-5	0.282	SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18061461	2R_18061461_SNP [dm3] 2R_22173956_SNP [dm6]	G	A	9.280e^-5	0.282	SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18061472	2R_18061472_SNP [dm3] 2R_22173967_SNP [dm6]	G	A	9.280e^-5	0.282	NON_SYNONYMOUS_CODING CG3045 UPSTREAM CG6758 DOWNSTREAM CR45151	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18063380	2R_18063380_SNP [dm3] 2R_22175875_SNP [dm6]	T	C	9.280e^-5	0.282	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18065072	2R_18065072_SNP [dm3] 2R_22177567_SNP [dm6]	A	G	9.280e^-5	0.282	SYNONYMOUS_CODING CG11170 UPSTREAM CR45151 DOWNSTREAM CG6758
2R	18065383	2R_18065383_SNP [dm3] 2R_22177878_SNP [dm6]	A	G	9.280e^-5	0.282	SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
2R	18065524	2R_18065524_SNP [dm3] 2R_22178019_SNP [dm6]	A	G	9.280e^-5	0.282	NON_SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
2R	18068728	2R_18068728_SNP [dm3] 2R_22181223_SNP [dm6]	A	G	9.280e^-5	0.282	INTRON CG11170 & 1 other
2R	18069974	2R_18069974_SNP [dm3] 2R_22182469_SNP [dm6]	T	C	9.280e^-5	0.282	SYNONYMOUS_CODING CG11275 UPSTREAM MED16 INTRON CG11170	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18078825	2R_18078825_SNP [dm3] 2R_22191320_SNP [dm6]	C	G	9.280e^-5	0.282	SYNONYMOUS_CODING Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18080032	2R_18080032_SNP [dm3] 2R_22192527_SNP [dm6]	G	A	9.280e^-5	0.282	INTRON Swim
2R	18085109	2R_18085109_SNP [dm3] 2R_22197604_SNP [dm6]	C	A	9.280e^-5	0.282	UPSTREAM snoRNA:Or-CD1 INTRON Swim	TF binding site BDTNP1_TFBS_dl
2R	18085527	2R_18085527_SNP [dm3] 2R_22198022_SNP [dm6]	C	A	9.280e^-5	0.282	UPSTREAM snoRNA:Or-CD1 INTRON Swim
2R	18085567	2R_18085567_SNP [dm3] 2R_22198062_SNP [dm6]	A	T	9.280e^-5	0.282	UPSTREAM snoRNA:Or-CD1 INTRON Swim
3R	11012977	3R_11012977_SNP [dm3] 3R_15187255_SNP [dm6]	A	T	9.280e^-5	0.282	INTRON Gyc88E
3R	11012979	3R_11012979_DEL [dm3] 3R_15187257_DEL [dm6]	CAAAA	G	9.280e^-5	0.282	INTRON Gyc88E
3R	11012989	3R_11012989_DEL [dm3] 3R_15187267_DEL [dm6]	TA	C	9.280e^-5	0.282	INTRON Gyc88E
3R	11012992	3R_11012992_SNP [dm3] 3R_15187270_SNP [dm6]	T	A	9.280e^-5	0.282	INTRON Gyc88E
3R	11013001	3R_11013001_MNP [dm3] 3R_15187279_MNP [dm6]	CTC	AAG	9.280e^-5	0.282	INTRON Gyc88E
3R	11013006	3R_11013006_SNP [dm3] 3R_15187284_SNP [dm6]	T	C	9.280e^-5	0.282	INTRON Gyc88E
3R	11013009	3R_11013009_DEL [dm3] 3R_15187287_DEL [dm6]	CGC	AA	9.280e^-5	0.282	INTRON Gyc88E
3R	11013019	3R_11013019_DEL [dm3] 3R_15187297_DEL [dm6]	ATAAA	A	9.280e^-5	0.282	INTRON Gyc88E
3R	11013029	3R_11013029_SNP [dm3] 3R_15187307_SNP [dm6]	A	T	9.280e^-5	0.282	INTRON Gyc88E
3R	11013031	3R_11013031_INS [dm3] 3R_15187309_INS [dm6]	T	TGG	9.280e^-5	0.282	INTRON Gyc88E
3R	11013034	3R_11013034_SNP [dm3] 3R_15187312_SNP [dm6]	G	T	9.280e^-5	0.282	INTRON Gyc88E
3R	11014563	3R_11014563_SNP [dm3] 3R_15188841_SNP [dm6]	T	C	9.280e^-5	0.282	SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1188517	X_1188517_SNP [dm3] X_1294484_SNP [dm6]	T	C	9.280e^-5	0.282	INTRON DAAM	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16143673	3L_16143673_SNP [dm3] 3L_16150573_SNP [dm6]	G	A	9.395e^-5	0.282	INTRON CG5151	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19493780	2R_19493780_SNP [dm3] 2R_23606257_SNP [dm6]	A	G	9.494e^-5	0.282	SYNONYMOUS_CODING CG17662 INTRON CG17664	TF binding site mE1_TFBS_chinmo
2L	1607045	2L_1607045_DEL [dm3] 2L_1607045_DEL [dm6]	GC	G	9.528e^-5	0.282	UTR_3_PRIME haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1607048	2L_1607048_DEL [dm3] 2L_1607048_DEL [dm6]	GCA	G	9.528e^-5	0.282	UTR_3_PRIME haf INTRON CG31935	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18281761	2L_18281761_SNP [dm3] 2L_18281761_SNP [dm6]	T	A	9.528e^-5	0.282	INTERGENIC
2L	2792775	2L_2792775_SNP [dm3] 2L_2792775_SNP [dm6]	A	T	9.528e^-5	0.282	UTR_3_PRIME Syt1 INTRON Syt1
2L	2792776	2L_2792776_SNP [dm3] 2L_2792776_SNP [dm6]	G	A	9.528e^-5	0.282	UTR_3_PRIME Syt1 INTRON Syt1
2R	12988578	2R_12988578_SNP [dm3] 2R_17101073_SNP [dm6]	A	T	9.528e^-5	0.282	INTRON CG30456
2R	15033609	2R_15033609_SNP [dm3] 2R_19146104_SNP [dm6]	C	T	9.528e^-5	0.282	DOWNSTREAM CR43399 INTRON ena	TF binding site mE1_TFBS_inv
2R	18059295	2R_18059295_SNP [dm3] 2R_22171790_SNP [dm6]	G	A	9.528e^-5	0.282	NON_SYNONYMOUS_CODING a INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18060843	2R_18060843_SNP [dm3] 2R_22173338_SNP [dm6]	T	A	9.528e^-5	0.282	SYNONYMOUS_CODING CG3045 DOWNSTREAM a	TF binding site mE1_TFBS_sens
2R	18065516	2R_18065516_SNP [dm3] 2R_22178011_SNP [dm6]	A	G	9.528e^-5	0.282	SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
2R	18971537	2R_18971537_SNP [dm3] 2R_23084014_SNP [dm6]	C	T	9.528e^-5	0.282	DOWNSTREAM Gr59b INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2R	19881712	2R_19881712_SNP [dm3] 2R_23994189_SNP [dm6]	T	A	9.528e^-5	0.282	INTRON CG3860
2R	19890048	2R_19890048_SNP [dm3] 2R_24002525_SNP [dm6]	T	C	9.528e^-5	0.282	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6325111	2R_6325111_SNP [dm3] 2R_10437606_SNP [dm6]	T	A	9.528e^-5	0.282	UPSTREAM Galphao & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	6325112	2R_6325112_SNP [dm3] 2R_10437607_SNP [dm6]	G	T	9.528e^-5	0.282	UPSTREAM Galphao & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	10157408	3L_10157408_SNP [dm3] 3L_10164308_SNP [dm6]	T	C	9.528e^-5	0.282	INTRON dpr10
3L	12067958	3L_12067958_SNP [dm3] 3L_12074858_SNP [dm6]	A	G	9.528e^-5	0.282	INTRON Sema-5c
3L	12109055	3L_12109055_SNP [dm3] 3L_12115955_SNP [dm6]	G	A	9.528e^-5	0.282	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3L	12769906	3L_12769906_SNP [dm3] 3L_12776806_SNP [dm6]	G	T	9.528e^-5	0.282	NON_SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
3L	3429733	3L_3429733_SNP [dm3] 3L_3429733_SNP [dm6]	G	C	9.528e^-5	0.282	INTRON eIF5B
3L	8573495	3L_8573495_SNP [dm3] 3L_8580395_SNP [dm6]	C	A	9.528e^-5	0.282	INTRON CG43078
3L	9860980	3L_9860980_SNP [dm3] 3L_9867880_SNP [dm6]	C	G	9.528e^-5	0.282	INTRON CG8108	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12850402	X_12850402_SNP [dm3] X_12956369_SNP [dm6]	A	C	9.528e^-5	0.282	INTRON hec	TF binding site mE1_TFBS_sbb
X	13532495	X_13532495_SNP [dm3] X_13638462_SNP [dm6]	G	A	9.528e^-5	0.282	INTRON NFAT
X	6618693	X_6618693_SNP [dm3] X_6724660_SNP [dm6]	T	G	9.528e^-5	0.282	INTRON CG3168	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz
X	6968166	X_6968166_SNP [dm3] X_7074133_SNP [dm6]	T	C	9.528e^-5	0.282	DOWNSTREAM Sxl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
X	6968182	X_6968182_SNP [dm3] X_7074149_SNP [dm6]	T	C	9.528e^-5	0.282	DOWNSTREAM Sxl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
3L	17854468	3L_17854468_SNP [dm3] 3L_17861368_SNP [dm6]	A	T	9.640e^-5	0.285	DOWNSTREAM CG34002 INTERGENIC
2L	11326543	2L_11326543_SNP [dm3] 2L_11326543_SNP [dm6]	A	G	9.690e^-5	0.285	INTERGENIC
X	12515719	X_12515719_SNP [dm3] X_12621686_SNP [dm6]	G	C	9.690e^-5	0.285	UPSTREAM CR44568 DOWNSTREAM CG11085 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4681849	2L_4681849_SNP [dm3] 2L_4681849_SNP [dm6]	C	A	9.699e^-5	0.285	UPSTREAM CG11929 INTERGENIC
2L	2764155	2L_2764155_SNP [dm3] 2L_2764155_SNP [dm6]	C	A	9.784e^-5	0.287	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
2L	3286376	2L_3286376_SNP [dm3] 2L_3286376_SNP [dm6]	C	T	9.839e^-5	0.288	INTERGENIC
2R	10512084	2R_10512084_DEL [dm3] 2R_14624579_DEL [dm6]	AAA	A	9.839e^-5	0.288	DOWNSTREAM snoRNA:Me28S-G2703a & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
2L	16448498	2L_16448498_SNP [dm3] 2L_16448498_SNP [dm6]	G	A	9.882e^-5	0.289	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2R	16923739	2R_16923739_SNP [dm3] 2R_21036234_SNP [dm6]	C	T	1.008e^-4	0.289	INTERGENIC
2L	9885386	2L_9885386_SNP [dm3] 2L_9885386_SNP [dm6]	A	C	1.010e^-4	0.289	INTRON nAChRalpha6
2R	1646015	2R_1646015_SNP [dm3] 2R_5758510_SNP [dm6]	T	C	1.010e^-4	0.289	SYNONYMOUS_CODING CG7791 DOWNSTREAM CG34200	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14654522	3L_14654522_SNP [dm3] 3L_14661422_SNP [dm6]	C	G	1.013e^-4	0.289	INTRON dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sbb
3L	3409651	3L_3409651_SNP [dm3] 3L_3409651_SNP [dm6]	A	C	1.021e^-4	0.289	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18057482	2R_18057482_SNP [dm3] 2R_22169977_SNP [dm6]	T	A	1.022e^-4	0.289	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8839318	3L_8839318_SNP [dm3] 3L_8846218_SNP [dm6]	G	A	1.022e^-4	0.289	INTRON dally
2R	18065306	2R_18065306_SNP [dm3] 2R_22177801_SNP [dm6]	G	A	1.027e^-4	0.289	SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
2R	18065730	2R_18065730_SNP [dm3] 2R_22178225_SNP [dm6]	C	T	1.027e^-4	0.289	NON_SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
3L	7237321	3L_7237321_SNP [dm3] 3L_7244221_SNP [dm6]	A	C	1.030e^-4	0.289	UPSTREAM mei-P22 & 1 other INTERGENIC	TF binding site mE1_TFBS_Ubx
2L	19474765	2L_19474765_DEL [dm3] 2L_19474765_DEL [dm6]	TGGTCT	T	1.034e^-4	0.289	INTERGENIC
2L	4063760	2L_4063760_SNP [dm3] 2L_4063760_SNP [dm6]	C	T	1.042e^-4	0.289	INTRON ed
2R	12621601	2R_12621601_SNP [dm3] 2R_16734096_SNP [dm6]	T	C	1.042e^-4	0.289	INTERGENIC
3L	12108869	3L_12108869_INS [dm3] 3L_12115769_INS [dm6]	C	CC	1.042e^-4	0.289	UPSTREAM l_3_j2D3 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14549896	3L_14549896_SNP [dm3] 3L_14556796_SNP [dm6]	T	C	1.042e^-4	0.289	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15264508	3L_15264508_SNP [dm3] 3L_15271408_SNP [dm6]	T	C	1.042e^-4	0.289	INTERGENIC
3L	15265358	3L_15265358_SNP [dm3] 3L_15272258_SNP [dm6]	G	A	1.042e^-4	0.289	INTERGENIC
3L	15265363	3L_15265363_SNP [dm3] 3L_15272263_SNP [dm6]	C	G	1.042e^-4	0.289	INTERGENIC
3L	15265373	3L_15265373_SNP [dm3] 3L_15272273_SNP [dm6]	T	C	1.042e^-4	0.289	INTERGENIC
3L	15265374	3L_15265374_SNP [dm3] 3L_15272274_SNP [dm6]	A	T	1.042e^-4	0.289	INTERGENIC
3L	15265376	3L_15265376_SNP [dm3] 3L_15272276_SNP [dm6]	A	C	1.042e^-4	0.289	INTERGENIC
3L	15265380	3L_15265380_SNP [dm3] 3L_15272280_SNP [dm6]	C	A	1.042e^-4	0.289	INTERGENIC
3L	15265382	3L_15265382_SNP [dm3] 3L_15272282_SNP [dm6]	A	T	1.042e^-4	0.289	INTERGENIC
3L	15268994	3L_15268994_SNP [dm3] 3L_15275894_SNP [dm6]	G	T	1.042e^-4	0.289	INTERGENIC
3L	15269482	3L_15269482_SNP [dm3] 3L_15276382_SNP [dm6]	T	G	1.042e^-4	0.289	INTERGENIC
3L	17244808	3L_17244808_SNP [dm3] 3L_17251708_SNP [dm6]	A	G	1.042e^-4	0.289	DOWNSTREAM CG6497 INTRON CR43870
3L	17850301	3L_17850301_SNP [dm3] 3L_17857201_SNP [dm6]	A	T	1.042e^-4	0.289	UPSTREAM CG5535 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17883394	3L_17883394_SNP [dm3] 3L_17890294_SNP [dm6]	C	T	1.042e^-4	0.289	INTRON CG7402
3L	17934957	3L_17934957_SNP [dm3] 3L_17941857_SNP [dm6]	A	T	1.042e^-4	0.289	INTRON CG43174
3L	17934961	3L_17934961_SNP [dm3] 3L_17941861_SNP [dm6]	G	T	1.042e^-4	0.289	INTRON CG43174
3L	3774872	3L_3774872_SNP [dm3] 3L_3774872_SNP [dm6]	T	G	1.042e^-4	0.289	INTRON CG32264
3L	4209994	3L_4209994_DEL [dm3] 3L_4209994_DEL [dm6]	AT	A	1.042e^-4	0.289	UPSTREAM Cpr64Aa DOWNSTREAM Cpr64Ab INTRON CG43367
3R	13890351	3R_13890351_SNP [dm3] 3R_18064629_SNP [dm6]	A	G	1.042e^-4	0.289	INTERGENIC
2R	2911183	2R_2911183_INS [dm3] 2R_7023678_INS [dm6]	T	TGT	1.051e^-4	0.291	EXON CR44172
2L	4612220	2L_4612220_SNP [dm3] 2L_4612220_SNP [dm6]	A	G	1.064e^-4	0.294	INTRON dp	TF binding site mE1_TFBS_kn
3R	8640516	3R_8640516_SNP [dm3] 3R_12814794_SNP [dm6]	C	T	1.065e^-4	0.294	INTRON CG31345
3R	8640525	3R_8640525_SNP [dm3] 3R_12814803_SNP [dm6]	G	T	1.065e^-4	0.294	INTRON CG31345
2R	10075984	2R_10075984_SNP [dm3] 2R_14188479_SNP [dm6]	G	C	1.067e^-4	0.294	SYNONYMOUS_CODING CG30069
X	2366995	X_2366995_SNP [dm3] X_2472962_SNP [dm6]	C	A	1.067e^-4	0.294	NON_SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_HSA
2R	16638803	2R_16638803_SNP [dm3] 2R_20751298_SNP [dm6]	G	A	1.071e^-4	0.294	SYNONYMOUS_CODING CG34201 DOWNSTREAM dpr
2L	16748464	2L_16748464_SNP [dm3] 2L_16748464_SNP [dm6]	C	A	1.072e^-4	0.294	UTR_3_PRIME CG17912 INTRON CG17912
2L	16748492	2L_16748492_SNP [dm3] 2L_16748492_SNP [dm6]	T	A	1.072e^-4	0.294	UTR_3_PRIME CG17912 INTRON CG17912
2R	17269353	2R_17269353_SNP [dm3] 2R_21381848_SNP [dm6]	A	T	1.075e^-4	0.294	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_inv
X	2243750	X_2243750_SNP [dm3] X_2349717_SNP [dm6]	G	A	1.079e^-4	0.295	INTRON ptr
2R	19354367	2R_19354367_INS [dm3] 2R_23466844_INS [dm6]	A	AC	1.087e^-4	0.296	INTRON CG43795	TF binding site mE1_TFBS_chinmo
3R	8960634	3R_8960634_DEL [dm3] 3R_13134912_DEL [dm6]	TCACAATTT	T	1.091e^-4	0.297	INTRON timeout & 2 others
2L	15976229	2L_15976229_SNP [dm3] 2L_15976229_SNP [dm6]	C	T	1.095e^-4	0.298	INTERGENIC
3R	16335693	3R_16335693_SNP [dm3] 3R_20509971_SNP [dm6]	C	A	1.098e^-4	0.298	INTRON CG4288
3R	2480379	3R_2480379_SNP [dm3] 3R_6654657_SNP [dm6]	G	T	1.098e^-4	0.298	NON_SYNONYMOUS_CODING Taf1
3L	15011532	3L_15011532_SNP [dm3] 3L_15018432_SNP [dm6]	G	A	1.103e^-4	0.298	SYNONYMOUS_CODING Sytbeta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25542465	3R_25542465_SNP [dm3] 3R_29716743_SNP [dm6]	C	G	1.119e^-4	0.302	SYNONYMOUS_CODING Obp99b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18357574	3R_18357574_SNP [dm3] 3R_22531852_SNP [dm6]	T	C	1.133e^-4	0.303	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
3R	22785237	3R_22785237_SNP [dm3] 3R_26959515_SNP [dm6]	T	A	1.133e^-4	0.303	INTERGENIC
3R	26439812	3R_26439812_SNP [dm3] 3R_30614090_SNP [dm6]	A	G	1.133e^-4	0.303	DOWNSTREAM CR45571 EXON CR45571
3L	2610234	3L_2610234_SNP [dm3] 3L_2610234_SNP [dm6]	G	A	1.139e^-4	0.303	UTR_3_PRIME Pxn INTRON Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3260971	3L_3260971_SNP [dm3] 3L_3260971_SNP [dm6]	T	A	1.146e^-4	0.303	INTRON ckd
2R	6218056	2R_6218056_SNP [dm3] 2R_10330551_SNP [dm6]	A	T	1.156e^-4	0.303	INTRON CG42732	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4966667	2R_4966667_SNP [dm3] 2R_9079162_SNP [dm6]	C	A	1.160e^-4	0.303	INTRON CG8083
2R	6443493	2R_6443493_SNP [dm3] 2R_10555988_SNP [dm6]	A	G	1.160e^-4	0.303	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9363152	2L_9363152_SNP [dm3] 2L_9363152_SNP [dm6]	A	T	1.161e^-4	0.303	INTERGENIC
2L	13379457	2L_13379457_SNP [dm3] 2L_13379457_SNP [dm6]	G	T	1.165e^-4	0.303	UPSTREAM CG9302 INTRON beta'COP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	15281600	3L_15281600_SNP [dm3] 3L_15288500_SNP [dm6]	C	T	1.166e^-4	0.303	INTERGENIC
2L	8842852	2L_8842852_SNP [dm3] 2L_8842852_SNP [dm6]	T	C	1.172e^-4	0.303	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9362310	2L_9362310_SNP [dm3] 2L_9362310_SNP [dm6]	C	A	1.178e^-4	0.303	INTERGENIC
3R	2473126	3R_2473126_SNP [dm3] 3R_6647404_SNP [dm6]	A	G	1.179e^-4	0.303	NON_SYNONYMOUS_CODING Taf1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	677496	2L_677496_SNP [dm3] 2L_677496_SNP [dm6]	A	G	1.186e^-4	0.303	INTRON ds
2L	9362229	2L_9362229_SNP [dm3] 2L_9362229_SNP [dm6]	G	C	1.187e^-4	0.303	INTERGENIC
2R	8440720	2R_8440720_SNP [dm3] 2R_12553215_SNP [dm6]	A	T	1.190e^-4	0.303	INTRON fra
3L	22730777	3L_22730777_SNP [dm3] 3L_22737677_SNP [dm6]	A	G	1.191e^-4	0.303	DOWNSTREAM l_3_04053 INTRON CG11241
X	13524754	X_13524754_SNP [dm3] X_13630721_SNP [dm6]	T	G	1.193e^-4	0.303	INTRON NFAT
3L	5988027	3L_5988027_SNP [dm3] 3L_5994927_SNP [dm6]	T	A	1.196e^-4	0.303	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	21849056	3R_21849056_SNP [dm3] 3R_26023334_SNP [dm6]	C	T	1.196e^-4	0.303	DOWNSTREAM E_spl_m4-BFM & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18078673	2R_18078673_SNP [dm3] 2R_22191168_SNP [dm6]	C	T	1.198e^-4	0.303	NON_SYNONYMOUS_CODING Swim	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7747872	3L_7747872_SNP [dm3] 3L_7754772_SNP [dm6]	G	A	1.213e^-4	0.303	SYNONYMOUS_CODING CG7409 INTRON CG32373
2R	4965618	2R_4965618_SNP [dm3] 2R_9078113_SNP [dm6]	A	T	1.219e^-4	0.303	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
2R	18698069	2R_18698069_SNP [dm3] 2R_22810564_SNP [dm6]	G	T	1.226e^-4	0.303	INTRON stl	TF binding site BDTNP1_TFBS_twi
2R	19888900	2R_19888900_SNP [dm3] 2R_24001377_SNP [dm6]	G	A	1.226e^-4	0.303	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12079652	2R_12079652_SNP [dm3] 2R_16192147_SNP [dm6]	T	C	1.229e^-4	0.303	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad
3R	21849012	3R_21849012_SNP [dm3] 3R_26023290_SNP [dm6]	C	T	1.230e^-4	0.303	DOWNSTREAM E_spl_m4-BFM & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5037726	X_5037726_SNP [dm3] X_5143693_SNP [dm6]	C	T	1.237e^-4	0.303	INTRON rg & 1 other
2R	1469490	2R_1469490_SNP [dm3] 2R_5581985_SNP [dm6]	C	T	1.238e^-4	0.303	INTERGENIC
2L	8979803	2L_8979803_INS [dm3] 2L_8979803_INS [dm6]	T	TT	1.242e^-4	0.303	UPSTREAM CG18662 INTRON CG13101
2R	1493447	2R_1493447_SNP [dm3] 2R_5605942_SNP [dm6]	C	T	1.242e^-4	0.303	INTERGENIC
2R	670862	2R_670862_SNP [dm3] 2R_4783357_SNP [dm6]	G	C	1.242e^-4	0.303	EXON CR43281	TF binding site mE1_TFBS_sens
2R	761494	2R_761494_SNP [dm3] 2R_4873989_SNP [dm6]	C	A	1.242e^-4	0.303	INTERGENIC	transposable element FlyBase
2L	2163510	2L_2163510_SNP [dm3] 2L_2163510_SNP [dm6]	C	A	1.243e^-4	0.303	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2L	12666403	2L_12666403_SNP [dm3] 2L_12666403_SNP [dm6]	C	T	1.259e^-4	0.303	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14537893	2L_14537893_SNP [dm3] 2L_14537893_SNP [dm6]	G	T	1.259e^-4	0.303	INTERGENIC	TF binding site mE1_TFBS_Kr mE1_TFBS_Ubx
2L	14549185	2L_14549185_SNP [dm3] 2L_14549185_SNP [dm6]	A	T	1.259e^-4	0.303	UPSTREAM CG4218 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14549200	2L_14549200_DEL [dm3] 2L_14549200_DEL [dm6]	AGTAAGCTATAACCATTCGA...	A	1.259e^-4	0.303	UPSTREAM CG4218 INTERGENIC	TF binding site mE1_TFBS_cad
2L	15365313	2L_15365313_DEL [dm3] 2L_15365313_DEL [dm6]	ATTGA	A	1.259e^-4	0.303	INTERGENIC
2L	15367726	2L_15367726_SNP [dm3] 2L_15367726_SNP [dm6]	A	T	1.259e^-4	0.303	INTERGENIC
2L	17429507	2L_17429507_SNP [dm3] 2L_17429507_SNP [dm6]	G	T	1.259e^-4	0.303	UPSTREAM CR44409 INTRON Dif
2L	17520839	2L_17520839_SNP [dm3] 2L_17520839_SNP [dm6]	A	T	1.259e^-4	0.303	DOWNSTREAM CG15143 INTRON Dhc36C
2L	20029034	2L_20029034_SNP [dm3] 2L_20029034_SNP [dm6]	T	C	1.259e^-4	0.303	INTRON sNPF
2L	9846218	2L_9846218_INS [dm3] 2L_9846218_INS [dm6]	G	GA	1.259e^-4	0.303	INTRON nAChRalpha6
2L	9995921	2L_9995921_SNP [dm3] 2L_9995921_SNP [dm6]	C	T	1.259e^-4	0.303	UTR_3_PRIME CG31875 DOWNSTREAM bib & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	10270885	2R_10270885_SNP [dm3] 2R_14383380_SNP [dm6]	C	T	1.259e^-4	0.303	SYNONYMOUS_CODING Dh44-R1	TF binding site BDTNP1_TFBS_da
2R	10673458	2R_10673458_SNP [dm3] 2R_14785953_SNP [dm6]	C	G	1.259e^-4	0.303	INTRON kn
2R	10673746	2R_10673746_SNP [dm3] 2R_14786241_SNP [dm6]	G	A	1.259e^-4	0.303	INTRON kn
2R	10675162	2R_10675162_SNP [dm3] 2R_14787657_SNP [dm6]	G	A	1.259e^-4	0.303	INTRON kn
2R	10820838	2R_10820838_SNP [dm3] 2R_14933333_SNP [dm6]	A	G	1.259e^-4	0.303	SPLICE_SITE_REGION CG10253 UPSTREAM CG12853 & 1 other INTRON CG10253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10821095	2R_10821095_SNP [dm3] 2R_14933590_SNP [dm6]	C	G	1.259e^-4	0.303	START_GAINED CG12853 UTR_5_PRIME CG12853 UPSTREAM CG10253 INTRON CG10253
2R	10821110	2R_10821110_SNP [dm3] 2R_14933605_SNP [dm6]	A	C	1.259e^-4	0.303	UPSTREAM CG10253 INTRON CG10253 & 1 other
2R	10821117	2R_10821117_INS [dm3] 2R_14933612_INS [dm6]	T	TG	1.259e^-4	0.303	UPSTREAM CG10253 INTRON CG10253 & 1 other
2R	10822153	2R_10822153_SNP [dm3] 2R_14934648_SNP [dm6]	T	C	1.259e^-4	0.303	DOWNSTREAM CG12853 INTRON CG10253	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Trl
2R	10822235	2R_10822235_SNP [dm3] 2R_14934730_SNP [dm6]	G	A	1.259e^-4	0.303	UPSTREAM Lap1 DOWNSTREAM CG12853 INTRON CG10253	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Trl
2R	10822791	2R_10822791_SNP [dm3] 2R_14935286_SNP [dm6]	G	A	1.259e^-4	0.303	UPSTREAM Lap1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
2R	10822917	2R_10822917_SNP [dm3] 2R_14935412_SNP [dm6]	G	C	1.259e^-4	0.303	UPSTREAM Lap1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	10823034	2R_10823034_SNP [dm3] 2R_14935529_SNP [dm6]	T	A	1.259e^-4	0.303	UPSTREAM Lap1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	10823689	2R_10823689_SNP [dm3] 2R_14936184_SNP [dm6]	C	T	1.259e^-4	0.303	SYNONYMOUS_CODING Lap1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10860326	2R_10860326_SNP [dm3] 2R_14972821_SNP [dm6]	T	C	1.259e^-4	0.303	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11464722	2R_11464722_SNP [dm3] 2R_15577217_SNP [dm6]	G	A	1.259e^-4	0.303	INTERGENIC
2R	13050138	2R_13050138_SNP [dm3] 2R_17162633_SNP [dm6]	C	T	1.259e^-4	0.303	INTERGENIC
2R	13050146	2R_13050146_SNP [dm3] 2R_17162641_SNP [dm6]	A	G	1.259e^-4	0.303	INTERGENIC
2R	13050159	2R_13050159_DEL [dm3] 2R_17162654_DEL [dm6]	ATTATA	A	1.259e^-4	0.303	INTERGENIC
2R	4576671	2R_4576671_SNP [dm3] 2R_8689166_SNP [dm6]	T	A	1.259e^-4	0.303	INTERGENIC
2R	6465432	2R_6465432_SNP [dm3] 2R_10577927_SNP [dm6]	A	T	1.259e^-4	0.303	INTRON psq
2R	6465442	2R_6465442_SNP [dm3] 2R_10577937_SNP [dm6]	G	A	1.259e^-4	0.303	INTRON psq
2R	8460149	2R_8460149_SNP [dm3] 2R_12572644_SNP [dm6]	T	G	1.259e^-4	0.303	DOWNSTREAM stil INTRON ClC-b	TF binding site mE1_TFBS_HSA
2R	8462388	2R_8462388_SNP [dm3] 2R_12574883_SNP [dm6]	T	A	1.259e^-4	0.303	DOWNSTREAM Sin3A INTRON ClC-b
2R	8614212	2R_8614212_SNP [dm3] 2R_12726707_SNP [dm6]	A	G	1.259e^-4	0.303	INTRON CG42663
2R	8614332	2R_8614332_SNP [dm3] 2R_12726827_SNP [dm6]	T	C	1.259e^-4	0.303	INTRON CG42663
2R	9075508	2R_9075508_SNP [dm3] 2R_13188003_SNP [dm6]	A	G	1.259e^-4	0.303	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9398384	2R_9398384_SNP [dm3] 2R_13510879_SNP [dm6]	G	C	1.259e^-4	0.303	SYNONYMOUS_CODING mip120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16477790	3L_16477790_DEL [dm3] 3L_16484690_DEL [dm6]	ACT	A	1.259e^-4	0.303	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477802	3L_16477802_SNP [dm3] 3L_16484702_SNP [dm6]	A	T	1.259e^-4	0.303	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477830	3L_16477830_SNP [dm3] 3L_16484730_SNP [dm6]	G	A	1.259e^-4	0.303	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16477888	3L_16477888_SNP [dm3] 3L_16484788_SNP [dm6]	A	T	1.259e^-4	0.303	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2425257	3L_2425257_SNP [dm3] 3L_2425257_SNP [dm6]	G	A	1.259e^-4	0.303	INTRON CG45186	TF binding site mE1_TFBS_bab1
3L	9509908	3L_9509908_SNP [dm3] 3L_9516808_SNP [dm6]	A	T	1.259e^-4	0.303	INTRON CG33700
3L	9509911	3L_9509911_SNP [dm3] 3L_9516811_SNP [dm6]	A	T	1.259e^-4	0.303	INTRON CG33700
3R	21859861	3R_21859861_SNP [dm3] 3R_26034139_SNP [dm6]	G	T	1.259e^-4	0.303	DOWNSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3R	21859865	3R_21859865_SNP [dm3] 3R_26034143_SNP [dm6]	T	G	1.259e^-4	0.303	DOWNSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3R	9863256	3R_9863256_SNP [dm3] 3R_14037534_SNP [dm6]	C	T	1.259e^-4	0.303	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9893141	2R_9893141_SNP [dm3] 2R_14005636_SNP [dm6]	A	G	1.268e^-4	0.304	DOWNSTREAM mir-4978 INTRON mam
3L	4124857	3L_4124857_SNP [dm3] 3L_4124857_SNP [dm6]	C	T	1.277e^-4	0.306	INTRON ens
2L	678977	2L_678977_SNP [dm3] 2L_678977_SNP [dm6]	T	C	1.285e^-4	0.306	INTRON ds
2L	18402764	2L_18402764_SNP [dm3] 2L_18402764_SNP [dm6]	A	T	1.287e^-4	0.306	INTERGENIC
2L	2388056	2L_2388056_SNP [dm3] 2L_2388056_SNP [dm6]	G	A	1.287e^-4	0.306	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6200476	2R_6200476_SNP [dm3] 2R_10312971_SNP [dm6]	C	G	1.287e^-4	0.306	UPSTREAM Obp46a & 1 other INTERGENIC
2R	6200483	2R_6200483_SNP [dm3] 2R_10312978_SNP [dm6]	G	A	1.287e^-4	0.306	UPSTREAM Obp46a & 1 other INTERGENIC
2R	18059072	2R_18059072_SNP [dm3] 2R_22171567_SNP [dm6]	C	T	1.295e^-4	0.306	SYNONYMOUS_CODING a INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18059233	2R_18059233_SNP [dm3] 2R_22171728_SNP [dm6]	A	C	1.295e^-4	0.306	NON_SYNONYMOUS_CODING a INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18065428	2R_18065428_SNP [dm3] 2R_22177923_SNP [dm6]	T	A	1.295e^-4	0.306	NON_SYNONYMOUS_CODING CG11170 DOWNSTREAM CG6758
2R	18075804	2R_18075804_SNP [dm3] 2R_22188299_SNP [dm6]	G	A	1.295e^-4	0.306	SYNONYMOUS_CODING Vps35	TF binding site mE1_TFBS_sens
2L	1626570	2L_1626570_SNP [dm3] 2L_1626570_SNP [dm6]	T	C	1.296e^-4	0.306	UPSTREAM CR44603 INTERGENIC
X	3370328	X_3370328_DEL [dm3] X_3476295_DEL [dm6]	TT	T	1.297e^-4	0.306	DOWNSTREAM CG10804 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	17854295	3L_17854295_SNP [dm3] 3L_17861195_SNP [dm6]	C	A	1.302e^-4	0.307	DOWNSTREAM CG34002 INTERGENIC	transposable element FlyBase
2L	13103696	2L_13103696_SNP [dm3] 2L_13103696_SNP [dm6]	A	C	1.305e^-4	0.307	UPSTREAM CR45461 INTERGENIC
2L	13103712	2L_13103712_SNP [dm3] 2L_13103712_SNP [dm6]	A	C	1.305e^-4	0.307	UPSTREAM CR45461 INTERGENIC
2L	13103713	2L_13103713_SNP [dm3] 2L_13103713_SNP [dm6]	T	C	1.305e^-4	0.307	UPSTREAM CR45461 INTERGENIC
3L	7748771	3L_7748771_SNP [dm3] 3L_7755671_SNP [dm6]	T	C	1.313e^-4	0.308	DOWNSTREAM CG7409 INTRON CG32373
2L	16448321	2L_16448321_SNP [dm3] 2L_16448321_SNP [dm6]	A	G	1.318e^-4	0.309	UTR_5_PRIME CG5888 UPSTREAM Idgf2 INTRON Idgf2	TF binding site mE1_TFBS_Trl
3L	10158776	3L_10158776_SNP [dm3] 3L_10165676_SNP [dm6]	C	T	1.328e^-4	0.311	DOWNSTREAM CG6628 INTRON dpr10
3L	845902	3L_845902_SNP [dm3] 3L_845902_SNP [dm6]	C	T	1.328e^-4	0.311	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo
2R	17358461	2R_17358461_SNP [dm3] 2R_21470956_SNP [dm6]	T	G	1.338e^-4	0.313	INTRON Sdc
2L	4063756	2L_4063756_SNP [dm3] 2L_4063756_SNP [dm6]	C	T	1.367e^-4	0.318	INTRON ed
2L	7391832	2L_7391832_SNP [dm3] 2L_7391832_SNP [dm6]	G	A	1.370e^-4	0.318	DOWNSTREAM gudu INTRON CG5160
2L	6492251	2L_6492251_SNP [dm3] 2L_6492251_SNP [dm6]	T	C	1.371e^-4	0.318	DOWNSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
2L	18616782	2L_18616782_SNP [dm3] 2L_18616782_SNP [dm6]	G	A	1.375e^-4	0.318	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	9264806	2L_9264806_SNP [dm3] 2L_9264806_SNP [dm6]	T	A	1.377e^-4	0.318	INTRON Ggamma30A
2L	9264808	2L_9264808_SNP [dm3] 2L_9264808_SNP [dm6]	C	T	1.377e^-4	0.318	INTRON Ggamma30A
2L	10632856	2L_10632856_SNP [dm3] 2L_10632856_SNP [dm6]	A	T	1.395e^-4	0.318	INTRON CG7329	TF binding site mE1_TFBS_inv
2L	14549226	2L_14549226_DEL [dm3] 2L_14549226_DEL [dm6]	TCTT	T	1.395e^-4	0.318	UPSTREAM CG4218 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8351073	2L_8351073_DEL [dm3] 2L_8351073_DEL [dm6]	GAACT	A	1.395e^-4	0.318	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2L	8351080	2L_8351080_DEL [dm3] 2L_8351080_DEL [dm6]	ATGCCCACACTATTGT...	A	1.395e^-4	0.318	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2L	8351101	2L_8351101_INS [dm3] 2L_8351101_INS [dm6]	T	AA	1.395e^-4	0.318	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2L	8351105	2L_8351105_DEL [dm3] 2L_8351105_DEL [dm6]	ACT	A	1.395e^-4	0.318	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2L	8351110	2L_8351110_SNP [dm3] 2L_8351110_SNP [dm6]	C	A	1.395e^-4	0.318	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2L	8351111	2L_8351111_SNP [dm3] 2L_8351111_SNP [dm6]	T	A	1.395e^-4	0.318	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2L	8351113	2L_8351113_DEL [dm3] 2L_8351113_DEL [dm6]	ATCAGGTGT	A	1.395e^-4	0.318	DOWNSTREAM CG7778 INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	8351125	2L_8351125_SNP [dm3] 2L_8351125_SNP [dm6]	T	A	1.395e^-4	0.318	DOWNSTREAM CG7778 INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	8351128	2L_8351128_DEL [dm3] 2L_8351128_DEL [dm6]	ATGA	A	1.395e^-4	0.318	DOWNSTREAM CG7778 INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	8351143	2L_8351143_DEL [dm3] 2L_8351143_DEL [dm6]	TCATGTTTAAGTAATTTCTA...	G	1.395e^-4	0.318	DOWNSTREAM CG7778 INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	8355912	2L_8355912_SNP [dm3] 2L_8355912_SNP [dm6]	T	C	1.395e^-4	0.318	UTR_3_PRIME CG7627 DOWNSTREAM Mur29B	TF binding site mE1_TFBS_cad
2R	10821111	2R_10821111_SNP [dm3] 2R_14933606_SNP [dm6]	A	G	1.395e^-4	0.318	UPSTREAM CG10253 INTRON CG10253 & 1 other
3L	568022	3L_568022_SNP [dm3] 3L_568022_SNP [dm6]	T	A	1.399e^-4	0.318	INTRON hipk
2R	12182769	2R_12182769_SNP [dm3] 2R_16295264_SNP [dm6]	T	C	1.404e^-4	0.319	SYNONYMOUS_CODING Atg9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	22059266	X_22059266_SNP [dm3] X_22657430_SNP [dm6]	T	A	1.421e^-4	0.322	EXON CR44997	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21390775	3R_21390775_SNP [dm3] 3R_25565053_SNP [dm6]	T	A	1.422e^-4	0.322	INTRON msi
2R	6218445	2R_6218445_SNP [dm3] 2R_10330940_SNP [dm6]	T	A	1.424e^-4	0.322	SYNONYMOUS_CODING CG42732 INTRON CG42732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11385492	2L_11385492_SNP [dm3] 2L_11385492_SNP [dm6]	C	A	1.426e^-4	0.322	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2R	18085560	2R_18085560_SNP [dm3] 2R_22198055_SNP [dm6]	C	G	1.436e^-4	0.324	UPSTREAM snoRNA:Or-CD1 INTRON Swim
3L	8839355	3L_8839355_SNP [dm3] 3L_8846255_SNP [dm6]	G	T	1.436e^-4	0.324	INTRON dally
2L	16748288	2L_16748288_SNP [dm3] 2L_16748288_SNP [dm6]	T	A	1.445e^-4	0.325	UTR_3_PRIME CG17912 INTRON CG17912
3L	3409675	3L_3409675_SNP [dm3] 3L_3409675_SNP [dm6]	C	A	1.449e^-4	0.326	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22271255	3R_22271255_SNP [dm3] 3R_26445533_SNP [dm6]	G	A	1.461e^-4	0.328	INTRON tx
3L	17867703	3L_17867703_SNP [dm3] 3L_17874603_SNP [dm6]	C	T	1.464e^-4	0.328	UPSTREAM CR43087 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8839375	3L_8839375_SNP [dm3] 3L_8846275_SNP [dm6]	C	A	1.464e^-4	0.328	INTRON dally
X	6967200	X_6967200_SNP [dm3] X_7073167_SNP [dm6]	G	A	1.464e^-4	0.328	DOWNSTREAM CG4607 INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	26956887	3R_26956887_SNP [dm3] 3R_31131165_SNP [dm6]	T	C	1.477e^-4	0.33	UPSTREAM CG15556 INTERGENIC
3R	26956888	3R_26956888_SNP [dm3] 3R_31131166_SNP [dm6]	C	G	1.477e^-4	0.33	UPSTREAM CG15556 INTERGENIC
2L	16049641	2L_16049641_SNP [dm3] 2L_16049641_SNP [dm6]	T	C	1.479e^-4	0.33	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	684985	2L_684985_SNP [dm3] 2L_684985_SNP [dm6]	C	A	1.484e^-4	0.33	INTRON ds	TF binding site BDTNP1_TFBS_dl
2L	20205448	2L_20205448_INS [dm3] 2L_20205448_INS [dm6]	T	TCTATAAGTCGCACACCGCG...	1.484e^-4	0.33	INTERGENIC
2L	20205454	2L_20205454_INS [dm3] 2L_20205454_INS [dm6]	T	TCTATAAG	1.484e^-4	0.33	INTERGENIC
2R	10821992	2R_10821992_SNP [dm3] 2R_14934487_SNP [dm6]	C	T	1.490e^-4	0.331	DOWNSTREAM CG12853 INTRON CG10253	TF binding site mE1_TFBS_Trl
X	15169282	X_15169282_SNP [dm3] X_15275249_SNP [dm6]	T	C	1.495e^-4	0.331	INTERGENIC
2R	19178658	2R_19178658_SNP [dm3] 2R_23291135_SNP [dm6]	C	A	1.498e^-4	0.332	EXON CR44783
X	22138754	X_22138754_SNP [dm3] X_22736918_SNP [dm6]	G	T	1.506e^-4	0.333	INTRON CR44997
3R	9542525	3R_9542525_SNP [dm3] 3R_13716803_SNP [dm6]	A	T	1.512e^-4	0.334	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
4	1062053	4_1062053_SNP [dm3] 4_1041427_SNP [dm6]	C	A	1.525e^-4	0.336	INTRON CaMKII
2R	9165101	2R_9165101_INS [dm3] 2R_13277596_INS [dm6]	G	GG	1.528e^-4	0.337	INTRON Dh31-R
2R	4919668	2R_4919668_SNP [dm3] 2R_9032163_SNP [dm6]	G	T	1.540e^-4	0.339	INTERGENIC
2R	10823121	2R_10823121_SNP [dm3] 2R_14935616_SNP [dm6]	C	A	1.566e^-4	0.344	UPSTREAM Lap1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	4965666	2R_4965666_DEL [dm3] 2R_9078161_DEL [dm6]	TT	T	1.576e^-4	0.346	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
2R	4965670	2R_4965670_SNP [dm3] 2R_9078165_SNP [dm6]	T	A	1.576e^-4	0.346	UPSTREAM CG8083 DOWNSTREAM ana INTERGENIC
2L	16147288	2L_16147288_SNP [dm3] 2L_16147288_SNP [dm6]	C	A	1.588e^-4	0.348	INTERGENIC
2L	12204208	2L_12204208_SNP [dm3] 2L_12204208_SNP [dm6]	G	A	1.601e^-4	0.35	INTRON aret
X	14942239	X_14942239_SNP [dm3] X_15048206_SNP [dm6]	C	T	1.610e^-4	0.352	UPSTREAM CG5541 INTRON hiw & 1 other	transposable element FlyBase
2L	7414021	2L_7414021_SNP [dm3] 2L_7414021_SNP [dm6]	G	T	1.630e^-4	0.354	INTRON chm	TF binding site mE1_TFBS_sens
2R	10271394	2R_10271394_SNP [dm3] 2R_14383889_SNP [dm6]	T	G	1.630e^-4	0.354	INTRON Dh44-R1	TF binding site BDTNP1_TFBS_da
3R	15278676	3R_15278676_SNP [dm3] 3R_19452954_SNP [dm6]	C	T	1.630e^-4	0.354	INTRON CG31221
3R	20682878	3R_20682878_SNP [dm3] 3R_24857156_SNP [dm6]	G	C	1.630e^-4	0.354	SYNONYMOUS_CODING CG10899 UPSTREAM HdacX DOWNSTREAM ppk22
3R	22430446	3R_22430446_SNP [dm3] 3R_26604724_SNP [dm6]	G	A	1.630e^-4	0.354	DOWNSTREAM scrib INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	2470483	3R_2470483_SNP [dm3] 3R_6644761_SNP [dm6]	A	T	1.634e^-4	0.354	UPSTREAM CG1315 INTERGENIC
3R	22784993	3R_22784993_SNP [dm3] 3R_26959271_SNP [dm6]	C	A	1.637e^-4	0.355	UPSTREAM CG6330 INTERGENIC
3L	4124889	3L_4124889_SNP [dm3] 3L_4124889_SNP [dm6]	A	C	1.655e^-4	0.358	INTRON ens
2L	13103242	2L_13103242_SNP [dm3] 2L_13103242_SNP [dm6]	A	C	1.663e^-4	0.359	INTERGENIC
3L	575955	3L_575955_SNP [dm3] 3L_575955_SNP [dm6]	A	G	1.664e^-4	0.359	UTR_3_PRIME hipk
2R	760982	2R_760982_SNP [dm3] 2R_4873477_SNP [dm6]	G	T	1.667e^-4	0.36	INTERGENIC	transposable element FlyBase
2R	18058233	2R_18058233_SNP [dm3] 2R_22170728_SNP [dm6]	G	T	1.672e^-4	0.36	INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2680501	2R_2680501_SNP [dm3] 2R_6792996_SNP [dm6]	T	A	1.684e^-4	0.36	INTRON Epac
2L	19377224	2L_19377224_SNP [dm3] 2L_19377224_SNP [dm6]	A	G	1.684e^-4	0.36	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	682635	2R_682635_SNP [dm3] 2R_4795130_SNP [dm6]	G	A	1.684e^-4	0.36	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2L	18402860	2L_18402860_SNP [dm3] 2L_18402860_SNP [dm6]	A	G	1.704e^-4	0.36	INTERGENIC
2L	17403255	2L_17403255_SNP [dm3] 2L_17403255_SNP [dm6]	G	A	1.706e^-4	0.36	INTRON CLIP-190
2L	19129342	2L_19129342_SNP [dm3] 2L_19129342_SNP [dm6]	G	A	1.706e^-4	0.36	DOWNSTREAM Aats-asn & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	4653822	2L_4653822_SNP [dm3] 2L_4653822_SNP [dm6]	T	A	1.706e^-4	0.36	DOWNSTREAM CG3355 INTERGENIC
2R	10009378	2R_10009378_SNP [dm3] 2R_14121873_SNP [dm6]	T	A	1.706e^-4	0.36	INTRON Prosap
2R	10677732	2R_10677732_SNP [dm3] 2R_14790227_SNP [dm6]	T	A	1.706e^-4	0.36	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	10677736	2R_10677736_SNP [dm3] 2R_14790231_SNP [dm6]	G	A	1.706e^-4	0.36	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	10681414	2R_10681414_SNP [dm3] 2R_14793909_SNP [dm6]	G	A	1.706e^-4	0.36	INTRON kn	TF binding site mE1_TFBS_sens
2R	8534455	2R_8534455_SNP [dm3] 2R_12646950_SNP [dm6]	A	C	1.706e^-4	0.36	INTRON CG8785
2R	8534456	2R_8534456_SNP [dm3] 2R_12646951_SNP [dm6]	G	A	1.706e^-4	0.36	INTRON CG8785
2R	8614321	2R_8614321_SNP [dm3] 2R_12726816_SNP [dm6]	C	T	1.706e^-4	0.36	INTRON CG42663
2R	9198748	2R_9198748_SNP [dm3] 2R_13311243_SNP [dm6]	C	T	1.706e^-4	0.36	INTERGENIC
2R	9601146	2R_9601146_INS [dm3] 2R_13713641_INS [dm6]	A	AGATAAAA	1.706e^-4	0.36	INTRON fas
3R	18765474	3R_18765474_SNP [dm3] 3R_22939752_SNP [dm6]	A	T	1.706e^-4	0.36	INTRON klg
3R	21956263	3R_21956263_SNP [dm3] 3R_26130541_SNP [dm6]	A	C	1.706e^-4	0.36	UTR_3_PRIME CG31324 DOWNSTREAM CG31324
2R	19653328	2R_19653328_SNP [dm3] 2R_23765805_SNP [dm6]	T	G	1.729e^-4	0.361	INTRON CG9850
2L	10673622	2L_10673622_SNP [dm3] 2L_10673622_SNP [dm6]	T	C	1.730e^-4	0.361	INTERGENIC
2L	16092387	2L_16092387_SNP [dm3] 2L_16092387_SNP [dm6]	T	A	1.730e^-4	0.361	INTERGENIC
2L	9846482	2L_9846482_SNP [dm3] 2L_9846482_SNP [dm6]	C	T	1.730e^-4	0.361	INTRON nAChRalpha6
2R	3765223	2R_3765223_SNP [dm3] 2R_7877718_SNP [dm6]	C	G	1.730e^-4	0.361	INTRON Dgk
2R	3767419	2R_3767419_SNP [dm3] 2R_7879914_SNP [dm6]	C	T	1.730e^-4	0.361	INTRON Dgk	TF binding site mE1_TFBS_cad
2R	646838	2R_646838_SNP [dm3] 2R_4759333_SNP [dm6]	T	C	1.730e^-4	0.361	INTERGENIC	transposable element FlyBase
2R	665424	2R_665424_SNP [dm3] 2R_4777919_SNP [dm6]	A	G	1.730e^-4	0.361	INTERGENIC	transposable element FlyBase
2R	665496	2R_665496_SNP [dm3] 2R_4777991_SNP [dm6]	C	G	1.730e^-4	0.361	INTERGENIC	transposable element FlyBase
2R	686042	2R_686042_SNP [dm3] 2R_4798537_SNP [dm6]	A	G	1.730e^-4	0.361	INTERGENIC	transposable element FlyBase
X	13688041	X_13688041_DEL [dm3] X_13794008_DEL [dm6]	GG	G	1.736e^-4	0.361	INTRON inaE
X	6967763	X_6967763_SNP [dm3] X_7073730_SNP [dm6]	A	T	1.736e^-4	0.361	DOWNSTREAM Sxl INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
X	3777609	X_3777609_SNP [dm3] X_3883576_SNP [dm6]	C	A	1.748e^-4	0.363	UPSTREAM CG15239 DOWNSTREAM VhaAC39-1 INTERGENIC
2L	16475798	2L_16475798_DEL [dm3] 2L_16475798_DEL [dm6]	CCGTG	C	1.750e^-4	0.363	INTRON dac
3R	19974623	3R_19974623_DEL [dm3] 3R_24148901_DEL [dm6]	TT	T	1.750e^-4	0.363	UTR_5_PRIME Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	2882002	2R_2882002_SNP [dm3] 2R_6994497_SNP [dm6]	G	C	1.758e^-4	0.363	DOWNSTREAM CG30159 INTRON Tsp42Ea	TF binding site mE1_TFBS_Trl
2R	2882291	2R_2882291_SNP [dm3] 2R_6994786_SNP [dm6]	T	C	1.758e^-4	0.363	DOWNSTREAM CG30159 INTRON Tsp42Ea	TF binding site mE1_TFBS_Trl
2R	1523999	2R_1523999_SNP [dm3] 2R_5636494_SNP [dm6]	T	A	1.759e^-4	0.363	INTERGENIC
2L	18875374	2L_18875374_SNP [dm3] 2L_18875374_SNP [dm6]	G	A	1.759e^-4	0.363	INTRON tup	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8234397	2L_8234397_SNP [dm3] 2L_8234397_SNP [dm6]	C	T	1.759e^-4	0.363	INTRON Pvr
2R	1517298	2R_1517298_SNP [dm3] 2R_5629793_SNP [dm6]	T	C	1.764e^-4	0.363	INTERGENIC	transposable element FlyBase
X	16401651	X_16401651_SNP [dm3] X_16507618_SNP [dm6]	G	T	1.772e^-4	0.364	INTRON para
2L	12088206	2L_12088206_SNP [dm3] 2L_12088206_SNP [dm6]	A	C	1.782e^-4	0.366	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11203841	2L_11203841_SNP [dm3] 2L_11203841_SNP [dm6]	T	A	1.782e^-4	0.366	UPSTREAM Ca-beta INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3821001	2L_3821001_SNP [dm3] 2L_3821001_SNP [dm6]	G	A	1.795e^-4	0.368	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9661529	3L_9661529_SNP [dm3] 3L_9668429_SNP [dm6]	G	A	1.815e^-4	0.372	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
2L	18526787	2L_18526787_SNP [dm3] 2L_18526787_SNP [dm6]	T	C	1.824e^-4	0.373	INTRON CG10211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9437948	2R_9437948_SNP [dm3] 2R_13550443_SNP [dm6]	A	T	1.827e^-4	0.373	UPSTREAM CG33156 INTRON CG33156	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	6693998	2L_6693998_SNP [dm3] 2L_6693998_SNP [dm6]	A	G	1.827e^-4	0.373	INTRON Tsp
2L	8842442	2L_8842442_SNP [dm3] 2L_8842442_SNP [dm6]	T	C	1.828e^-4	0.373	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	17977789	3L_17977789_SNP [dm3] 3L_17984689_SNP [dm6]	A	G	1.837e^-4	0.374	INTRON Eip75B
2L	8351136	2L_8351136_SNP [dm3] 2L_8351136_SNP [dm6]	C	T	1.847e^-4	0.375	DOWNSTREAM CG7778 INTERGENIC	TF binding site mE1_TFBS_zfh1
2R	9158688	2R_9158688_SNP [dm3] 2R_13271183_SNP [dm6]	C	G	1.847e^-4	0.375	INTRON Dh31-R
3L	846223	3L_846223_SNP [dm3] 3L_846223_SNP [dm6]	C	T	1.858e^-4	0.377	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15341387	3R_15341387_SNP [dm3] 3R_19515665_SNP [dm6]	C	T	1.860e^-4	0.377	INTRON Dys
2L	14655540	2L_14655540_SNP [dm3] 2L_14655540_SNP [dm6]	T	C	1.891e^-4	0.383	INTRON osp
3L	568017	3L_568017_SNP [dm3] 3L_568017_SNP [dm6]	A	T	1.906e^-4	0.386	INTRON hipk
2R	12269971	2R_12269971_SNP [dm3] 2R_16382466_SNP [dm6]	C	T	1.910e^-4	0.386	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
3R	22299235	3R_22299235_SNP [dm3] 3R_26473513_SNP [dm6]	A	G	1.923e^-4	0.388	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7655654	3L_7655654_SNP [dm3] 3L_7662554_SNP [dm6]	C	G	1.936e^-4	0.39	NON_SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3466590	2R_3466590_SNP [dm3] 2R_7579085_SNP [dm6]	C	T	1.947e^-4	0.392	SYNONYMOUS_CODING Vps13 EXON CR45130
3R	25073443	3R_25073443_SNP [dm3] 3R_29247721_SNP [dm6]	T	A	1.948e^-4	0.392	NON_SYNONYMOUS_CODING SP1029	TF binding site mE1_TFBS_cad
2R	15834612	2R_15834612_SNP [dm3] 2R_19947107_SNP [dm6]	T	G	1.976e^-4	0.396	UPSTREAM CG30447 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2R	19322794	2R_19322794_SNP [dm3] 2R_23435271_SNP [dm6]	C	A	1.976e^-4	0.396	INTERGENIC
3L	7237277	3L_7237277_SNP [dm3] 3L_7244177_SNP [dm6]	C	T	1.984e^-4	0.396	UPSTREAM mei-P22 & 1 other INTERGENIC
3L	7237278	3L_7237278_SNP [dm3] 3L_7244178_SNP [dm6]	T	C	1.984e^-4	0.396	UPSTREAM mei-P22 & 1 other INTERGENIC
2L	9264802	2L_9264802_SNP [dm3] 2L_9264802_SNP [dm6]	G	T	1.985e^-4	0.396	INTRON Ggamma30A
3L	20246795	3L_20246795_INS [dm3] 3L_20253695_INS [dm6]	T	TT	1.988e^-4	0.396	INTRON rdgC
3R	23512415	3R_23512415_INS [dm3] 3R_27686693_INS [dm6]	A	AAA	2.026e^-4	0.396	INTRON CG12880 & 1 other	TF binding site mE1_TFBS_cad
2R	3764988	2R_3764988_SNP [dm3] 2R_7877483_SNP [dm6]	A	G	2.028e^-4	0.396	INTRON Dgk
2R	7839622	2R_7839622_SNP [dm3] 2R_11952117_SNP [dm6]	T	A	2.031e^-4	0.396	INTRON CG13188
2L	9362982	2L_9362982_SNP [dm3] 2L_9362982_SNP [dm6]	A	C	2.034e^-4	0.396	INTERGENIC
X	7504243	X_7504243_SNP [dm3] X_7610210_SNP [dm6]	G	C	2.034e^-4	0.396	INTRON ct
X	7504337	X_7504337_SNP [dm3] X_7610304_SNP [dm6]	A	G	2.034e^-4	0.396	INTRON ct
X	5037834	X_5037834_DEL [dm3] X_5143801_DEL [dm6]	ACCCACACA	A	2.046e^-4	0.396	INTRON rg & 1 other
2R	6218301	2R_6218301_SNP [dm3] 2R_10330796_SNP [dm6]	T	C	2.052e^-4	0.396	SYNONYMOUS_CODING CG42732 INTRON CG42732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19451297	3R_19451297_SNP [dm3] 3R_23625575_SNP [dm6]	A	G	2.063e^-4	0.396	INTRON CG31145
3L	11095777	3L_11095777_SNP [dm3] 3L_11102677_SNP [dm6]	C	T	2.068e^-4	0.396	NON_SYNONYMOUS_CODING Elo68alpha UPSTREAM Elo68beta DOWNSTREAM CG32071
2L	1146874	2L_1146874_SNP [dm3] 2L_1146874_SNP [dm6]	T	C	2.069e^-4	0.396	UPSTREAM CG4749 INTRON MFS3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12095773	2L_12095773_SNP [dm3] 2L_12095773_SNP [dm6]	C	T	2.069e^-4	0.396	SYNONYMOUS_CODING CG6712 UPSTREAM Mt2 DOWNSTREAM Pex19	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12095806	2L_12095806_SNP [dm3] 2L_12095806_SNP [dm6]	C	T	2.069e^-4	0.396	SYNONYMOUS_CODING CG6712 UPSTREAM Mt2 DOWNSTREAM Pex19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12095932	2L_12095932_SNP [dm3] 2L_12095932_SNP [dm6]	G	A	2.069e^-4	0.396	SYNONYMOUS_CODING CG6712 UPSTREAM Mt2 DOWNSTREAM Pex19	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1828062	2L_1828062_SNP [dm3] 2L_1828062_SNP [dm6]	T	A	2.069e^-4	0.396	INTERGENIC
2L	5450427	2L_5450427_SNP [dm3] 2L_5450427_SNP [dm6]	G	T	2.069e^-4	0.396	INTERGENIC
2L	5450456	2L_5450456_SNP [dm3] 2L_5450456_SNP [dm6]	C	G	2.069e^-4	0.396	INTERGENIC
2R	10086345	2R_10086345_SNP [dm3] 2R_14198840_SNP [dm6]	T	A	2.069e^-4	0.396	UTR_3_PRIME VGAT DOWNSTREAM CG30069
2R	13543671	2R_13543671_SNP [dm3] 2R_17656166_SNP [dm6]	A	G	2.069e^-4	0.396	INTRON CCHa1-R
2R	2910661	2R_2910661_DEL [dm3] 2R_7023156_DEL [dm6]	TGTCGTTG	A	2.069e^-4	0.396	DOWNSTREAM CR44172 INTERGENIC
2R	8823969	2R_8823969_DEL [dm3] 2R_12936464_DEL [dm6]	TTTAT	T	2.069e^-4	0.396	UTR_5_PRIME CG13322 UPSTREAM Sans	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12063860	3L_12063860_SNP [dm3] 3L_12070760_SNP [dm6]	T	C	2.069e^-4	0.396	INTRON Sema-5c
3L	12068573	3L_12068573_SNP [dm3] 3L_12075473_SNP [dm6]	A	T	2.069e^-4	0.396	INTRON Sema-5c
3L	13211158	3L_13211158_SNP [dm3] 3L_13218058_SNP [dm6]	T	G	2.069e^-4	0.396	DOWNSTREAM CR45098 & 1 other INTERGENIC
3L	13211160	3L_13211160_INS [dm3] 3L_13218060_INS [dm6]	G	GGA	2.069e^-4	0.396	DOWNSTREAM CR45098 & 1 other INTERGENIC
3L	8754284	3L_8754284_SNP [dm3] 3L_8761184_SNP [dm6]	C	T	2.069e^-4	0.396	NON_SYNONYMOUS_CODING Fhos UPSTREAM Fhos
X	12005708	X_12005708_SNP [dm3] X_12111675_SNP [dm6]	C	T	2.069e^-4	0.396	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
X	3369190	X_3369190_SNP [dm3] X_3475157_SNP [dm6]	C	T	2.069e^-4	0.396	UPSTREAM CG12206 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	3369599	X_3369599_DEL [dm3] X_3475566_DEL [dm6]	GACGCATTGG	G	2.069e^-4	0.396	DOWNSTREAM CG10804 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3369620	X_3369620_SNP [dm3] X_3475587_SNP [dm6]	C	T	2.069e^-4	0.396	DOWNSTREAM CG10804 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3370205	X_3370205_SNP [dm3] X_3476172_SNP [dm6]	C	T	2.069e^-4	0.396	DOWNSTREAM CG10804 INTRON CR44999	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
X	3370319	X_3370319_SNP [dm3] X_3476286_SNP [dm6]	C	A	2.069e^-4	0.396	DOWNSTREAM CG10804 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	3370339	X_3370339_SNP [dm3] X_3476306_SNP [dm6]	T	C	2.069e^-4	0.396	DOWNSTREAM CG10804 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	3370387	X_3370387_SNP [dm3] X_3476354_SNP [dm6]	G	A	2.069e^-4	0.396	DOWNSTREAM CG10804 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	3370632	X_3370632_SNP [dm3] X_3476599_SNP [dm6]	G	T	2.069e^-4	0.396	UTR_3_PRIME CG10804 DOWNSTREAM CG10804 INTRON CR44999
X	3370658	X_3370658_SNP [dm3] X_3476625_SNP [dm6]	T	A	2.069e^-4	0.396	UTR_3_PRIME CG10804 DOWNSTREAM CG10804 INTRON CR44999
X	3370840	X_3370840_SNP [dm3] X_3476807_SNP [dm6]	G	T	2.069e^-4	0.396	UTR_3_PRIME CG10804 INTRON CR44999
X	3370842	X_3370842_SNP [dm3] X_3476809_SNP [dm6]	G	A	2.069e^-4	0.396	UTR_3_PRIME CG10804 INTRON CR44999
X	6522241	X_6522241_INS [dm3] X_6628208_INS [dm6]	A	AA	2.069e^-4	0.396	INTRON pigs
2R	6689527	2R_6689527_SNP [dm3] 2R_10802022_SNP [dm6]	T	C	2.069e^-4	0.396	INTRON wde	transposable element FlyBase
2L	6303058	2L_6303058_SNP [dm3] 2L_6303058_SNP [dm6]	A	G	2.084e^-4	0.397	INTRON Ddr
2L	9114823	2L_9114823_SNP [dm3] 2L_9114823_SNP [dm6]	G	A	2.084e^-4	0.397	INTERGENIC
X	8190367	X_8190367_SNP [dm3] X_8296334_SNP [dm6]	A	G	2.094e^-4	0.397	INTRON nAChRalpha3	TF binding site mE1_TFBS_cad
2R	3441201	2R_3441201_SNP [dm3] 2R_7553696_SNP [dm6]	G	A	2.095e^-4	0.397	INTRON Corin
3L	2732198	3L_2732198_DEL [dm3] 3L_2732198_DEL [dm6]	GTTGTGGCGGAAG...	G	2.099e^-4	0.397	INTRON Mrtf
2R	10088989	2R_10088989_SNP [dm3] 2R_14201484_SNP [dm6]	G	A	2.104e^-4	0.397	UTR_3_PRIME Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10089032	2R_10089032_SNP [dm3] 2R_14201527_SNP [dm6]	G	T	2.104e^-4	0.397	UTR_3_PRIME Sox15 UPSTREAM VGAT	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7373666	2R_7373666_SNP [dm3] 2R_11486161_SNP [dm6]	C	G	2.104e^-4	0.397	INTRON inv
2R	9438071	2R_9438071_SNP [dm3] 2R_13550566_SNP [dm6]	G	A	2.104e^-4	0.397	UPSTREAM CG33156 INTRON CG33156	TF binding site mE1_TFBS_inv mE1_TFBS_sbb
3L	15910242	3L_15910242_SNP [dm3] 3L_15917142_SNP [dm6]	T	A	2.104e^-4	0.397	INTRON sff
X	10463427	X_10463427_SNP [dm3] X_10569394_SNP [dm6]	C	T	2.104e^-4	0.397	INTRON spri
X	10463523	X_10463523_SNP [dm3] X_10569490_SNP [dm6]	T	A	2.104e^-4	0.397	INTRON spri
X	3370238	X_3370238_SNP [dm3] X_3476205_SNP [dm6]	A	T	2.104e^-4	0.397	DOWNSTREAM CG10804 INTRON CR44999	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
X	3370426	X_3370426_SNP [dm3] X_3476393_SNP [dm6]	A	C	2.104e^-4	0.397	DOWNSTREAM CG10804 INTRON CR44999	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	16049651	2L_16049651_SNP [dm3] 2L_16049651_SNP [dm6]	A	G	2.110e^-4	0.398	UPSTREAM beat-Ia DOWNSTREAM BicC & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13937574	X_13937574_SNP [dm3] X_14043541_SNP [dm6]	T	C	2.114e^-4	0.398	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9436922	3R_9436922_SNP [dm3] 3R_13611200_SNP [dm6]	T	C	2.119e^-4	0.398	DOWNSTREAM CG9757 INTERGENIC
2L	8656084	2L_8656084_SNP [dm3] 2L_8656084_SNP [dm6]	C	A	2.122e^-4	0.398	INTRON Sema-1a
2R	8534898	2R_8534898_SNP [dm3] 2R_12647393_SNP [dm6]	C	T	2.122e^-4	0.398	INTRON CG8785
2L	18619087	2L_18619087_SNP [dm3] 2L_18619087_SNP [dm6]	T	A	2.126e^-4	0.399	INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	5881635	3L_5881635_SNP [dm3] 3L_5888535_SNP [dm6]	C	A	2.128e^-4	0.399	INTERGENIC
3L	7822313	3L_7822313_SNP [dm3] 3L_7829213_SNP [dm6]	C	T	2.133e^-4	0.399	INTRON Pdp1
2L	12667796	2L_12667796_SNP [dm3] 2L_12667796_SNP [dm6]	G	T	2.160e^-4	0.402	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_twi
2R	13545002	2R_13545002_SNP [dm3] 2R_17657497_SNP [dm6]	T	A	2.168e^-4	0.402	INTRON CCHa1-R	TF binding site mE1_TFBS_sens
2L	13369055	2L_13369055_SNP [dm3] 2L_13369055_SNP [dm6]	G	A	2.187e^-4	0.402	UPSTREAM CG31855 DOWNSTREAM Tap42 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
2L	9846158	2L_9846158_SNP [dm3] 2L_9846158_SNP [dm6]	G	T	2.219e^-4	0.402	INTRON nAChRalpha6
2R	13050169	2R_13050169_SNP [dm3] 2R_17162664_SNP [dm6]	T	G	2.219e^-4	0.402	INTERGENIC
2R	4784804	2R_4784804_SNP [dm3] 2R_8897299_SNP [dm6]	C	A	2.224e^-4	0.402	NON_SYNONYMOUS_CODING Sec31 DOWNSTREAM CR45202	TF binding site mE1_TFBS_chinmo
3R	2470623	3R_2470623_SNP [dm3] 3R_6644901_SNP [dm6]	T	A	2.224e^-4	0.402	UPSTREAM CG1315 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7731488	3R_7731488_SNP [dm3] 3R_11905766_SNP [dm6]	C	T	2.235e^-4	0.402	INTRON Cad87A
2R	15977474	2R_15977474_SNP [dm3] 2R_20089969_SNP [dm6]	C	T	2.237e^-4	0.402	UPSTREAM CR44633 INTERGENIC
X	14945653	X_14945653_SNP [dm3] X_15051620_SNP [dm6]	T	A	2.237e^-4	0.402	UTR_3_PRIME CG5541 INTRON hiw
X	14945676	X_14945676_SNP [dm3] X_15051643_SNP [dm6]	G	A	2.237e^-4	0.402	UTR_3_PRIME CG5541 INTRON hiw
X	14949069	X_14949069_SNP [dm3] X_15055036_SNP [dm6]	A	G	2.237e^-4	0.402	SPLICE_SITE_REGION hiw INTRON hiw
X	14950046	X_14950046_SNP [dm3] X_15056013_SNP [dm6]	G	A	2.237e^-4	0.402	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2L	10777515	2L_10777515_SNP [dm3] 2L_10777515_SNP [dm6]	T	C	2.239e^-4	0.402	INTRON CG31869
X	3368957	X_3368957_SNP [dm3] X_3474924_SNP [dm6]	C	T	2.240e^-4	0.402	UPSTREAM CG12206 INTRON CR44999	TF binding site BDTNP1_TFBS_dl
2L	7410421	2L_7410421_SNP [dm3] 2L_7410421_SNP [dm6]	C	T	2.247e^-4	0.402	UPSTREAM CG5181 & 1 other INTERGENIC
2L	12549157	2L_12549157_SNP [dm3] 2L_12549157_SNP [dm6]	T	A	2.254e^-4	0.402	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5495871	2L_5495871_SNP [dm3] 2L_5495871_SNP [dm6]	A	C	2.254e^-4	0.402	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	8349424	2L_8349424_SNP [dm3] 2L_8349424_SNP [dm6]	C	T	2.254e^-4	0.402	SYNONYMOUS_CODING CG7778
2L	8349929	2L_8349929_SNP [dm3] 2L_8349929_SNP [dm6]	G	T	2.254e^-4	0.402	NON_SYNONYMOUS_CODING CG7778
2L	8350696	2L_8350696_SNP [dm3] 2L_8350696_SNP [dm6]	A	G	2.254e^-4	0.402	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8350717	2L_8350717_SNP [dm3] 2L_8350717_SNP [dm6]	G	T	2.254e^-4	0.402	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	8351043	2L_8351043_SNP [dm3] 2L_8351043_SNP [dm6]	A	G	2.254e^-4	0.402	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2L	8351046	2L_8351046_SNP [dm3] 2L_8351046_SNP [dm6]	C	T	2.254e^-4	0.402	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1
2L	8351047	2L_8351047_SNP [dm3] 2L_8351047_SNP [dm6]	C	A	2.254e^-4	0.402	UTR_3_PRIME CG7778 DOWNSTREAM CG7778	TF binding site mE1_TFBS_zfh1

By genomic position
Variant impact
Gene name

Rep phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results