DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.899e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1990 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	5025290	2L_5025290_SNP [dm3] 2L_5025290_SNP [dm6]	G	T	1.232e^-7	0.231	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	17220640	2R_17220640_SNP [dm3] 2R_21333135_SNP [dm6]	C	T	3.330e^-7	0.299	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17221075	2R_17221075_SNP [dm3] 2R_21333570_SNP [dm6]	C	T	4.788e^-7	0.299	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a & 1 other	TF binding site mE1_TFBS_cad
2L	5025252	2L_5025252_SNP [dm3] 2L_5025252_SNP [dm6]	C	A	6.600e^-7	0.309	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	17220646	2R_17220646_SNP [dm3] 2R_21333141_SNP [dm6]	T	C	8.706e^-7	0.326	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12955420	X_12955420_SNP [dm3] X_13061387_SNP [dm6]	G	C	1.221e^-6	0.357	UPSTREAM mir-971 INTRON rad
2R	7213844	2R_7213844_SNP [dm3] 2R_11326339_SNP [dm6]	G	A	1.333e^-6	0.357	INTRON sha	TF binding site mE1_TFBS_Trl
2L	5025248	2L_5025248_SNP [dm3] 2L_5025248_SNP [dm6]	A	G	4.208e^-6	0.827	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
X	19647084	X_19647084_SNP [dm3] X_19753051_SNP [dm6]	C	G	4.542e^-6	0.827	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens
3L	21612306	3L_21612306_SNP [dm3] 3L_21619206_SNP [dm6]	C	A	4.570e^-6	0.827	DOWNSTREAM CG7166 INTRON CG11307	TF binding site mE1_TFBS_HSA
3R	3543896	3R_3543896_SNP [dm3] 3R_7718174_SNP [dm6]	A	C	4.978e^-6	0.827	INTERGENIC
3L	21612307	3L_21612307_SNP [dm3] 3L_21619207_SNP [dm6]	A	C	5.295e^-6	0.827	DOWNSTREAM CG7166 INTRON CG11307	TF binding site mE1_TFBS_HSA
X	12955430	X_12955430_SNP [dm3] X_13061397_SNP [dm6]	A	G	6.237e^-6	0.893	UPSTREAM mir-971 INTRON rad
2R	17220550	2R_17220550_SNP [dm3] 2R_21333045_SNP [dm6]	A	G	6.992e^-6	0.893	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5025236	2L_5025236_SNP [dm3] 2L_5025236_SNP [dm6]	A	C	7.270e^-6	0.893	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2L	5025247	2L_5025247_SNP [dm3] 2L_5025247_SNP [dm6]	T	A	9.113e^-6	0.893	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	14077242	2R_14077242_SNP [dm3] 2R_18189737_SNP [dm6]	A	C	9.652e^-6	0.893	DOWNSTREAM CG14500 INTRON CG33958
3R	18968168	3R_18968168_SNP [dm3] 3R_23142446_SNP [dm6]	T	G	9.786e^-6	0.893	UPSTREAM hh INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	5295020	2R_5295020_SNP [dm3] 2R_9407515_SNP [dm6]	G	C	9.938e^-6	0.893	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	461631	3L_461631_SNP [dm3] 3L_461631_SNP [dm6]	C	G	9.999e^-6	0.893	INTRON klar
2L	1094471	2L_1094471_SNP [dm3] 2L_1094471_SNP [dm6]	T	G	1.019e^-5	0.893	INTRON CG4629
3L	10109219	3L_10109219_DEL [dm3] 3L_10116119_DEL [dm6]	TT	T	1.051e^-5	0.893	INTRON dpr6
3L	2147069	3L_2147069_SNP [dm3] 3L_2147069_SNP [dm6]	T	C	1.095e^-5	0.893	INTRON zormin
2R	14273279	2R_14273279_SNP [dm3] 2R_18385774_SNP [dm6]	C	T	1.217e^-5	0.904	UPSTREAM CG15067 & 1 other DOWNSTREAM CG18107 INTERGENIC
3L	21916473	3L_21916473_SNP [dm3] 3L_21923373_SNP [dm6]	A	G	1.239e^-5	0.904	UTR_3_PRIME mub INTRON mub
2L	15859794	2L_15859794_SNP [dm3] 2L_15859794_SNP [dm6]	A	G	1.275e^-5	0.904	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	19227864	3R_19227864_SNP [dm3] 3R_23402142_SNP [dm6]	A	C	1.301e^-5	0.904	UPSTREAM Ir94d DOWNSTREAM CG17380 INTERGENIC
3R	19227859	3R_19227859_SNP [dm3] 3R_23402137_SNP [dm6]	C	A	1.401e^-5	0.904	UPSTREAM Ir94d DOWNSTREAM CG17380 INTERGENIC
2R	14886513	2R_14886513_SNP [dm3] 2R_18999008_SNP [dm6]	T	C	1.492e^-5	0.904	INTRON tn
2R	17220553	2R_17220553_SNP [dm3] 2R_21333048_SNP [dm6]	C	T	1.511e^-5	0.904	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10853015	2R_10853015_SNP [dm3] 2R_14965510_SNP [dm6]	A	T	1.528e^-5	0.904	UPSTREAM ckn INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	3681226	2L_3681226_SNP [dm3] 2L_3681226_SNP [dm6]	A	T	1.542e^-5	0.904	INTRON CG34340
3L	21460609	3L_21460609_SNP [dm3] 3L_21467509_SNP [dm6]	G	A	1.646e^-5	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10695726	3L_10695726_SNP [dm3] 3L_10702626_SNP [dm6]	A	C	1.667e^-5	0.911	INTERGENIC
3R	7334298	3R_7334298_SNP [dm3] 3R_11508576_SNP [dm6]	G	C	1.700e^-5	0.911	INTERGENIC
2L	2805620	2L_2805620_SNP [dm3] 2L_2805620_SNP [dm6]	G	A	1.795e^-5	0.912	INTRON daw	TF binding site mE1_TFBS_Trl
2R	9976074	2R_9976074_SNP [dm3] 2R_14088569_SNP [dm6]	C	T	1.818e^-5	0.912	INTRON Prosap
3L	21612312	3L_21612312_SNP [dm3] 3L_21619212_SNP [dm6]	C	T	1.892e^-5	0.912	DOWNSTREAM CG7166 INTRON CG11307	TF binding site mE1_TFBS_HSA
3R	16230634	3R_16230634_SNP [dm3] 3R_20404912_SNP [dm6]	C	G	1.897e^-5	0.912	INTRON Gfrl
2R	9976072	2R_9976072_SNP [dm3] 2R_14088567_SNP [dm6]	C	A	1.989e^-5	0.913	INTRON Prosap
2L	5582238	2L_5582238_SNP [dm3] 2L_5582238_SNP [dm6]	G	T	1.997e^-5	0.913	INTERGENIC
2L	5296159	2L_5296159_SNP [dm3] 2L_5296159_SNP [dm6]	A	G	2.098e^-5	0.92	INTRON vri
3R	10187071	3R_10187071_SNP [dm3] 3R_14361349_SNP [dm6]	C	A	2.162e^-5	0.92	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5151102	3R_5151102_SNP [dm3] 3R_9325380_SNP [dm6]	G	A	2.239e^-5	0.92	INTRON CG8861
3L	3749170	3L_3749170_DEL [dm3] 3L_3749170_DEL [dm6]	AA	A	2.286e^-5	0.92	INTRON CG32264
3R	12809881	3R_12809881_SNP [dm3] 3R_16984159_SNP [dm6]	T	G	2.294e^-5	0.92	INTRON CG18622	TF binding site mE1_TFBS_cad
2L	14787342	2L_14787342_SNP [dm3] 2L_14787342_SNP [dm6]	C	A	2.353e^-5	0.92	INTERGENIC
2R	17467033	2R_17467033_SNP [dm3] 2R_21579528_SNP [dm6]	A	C	2.479e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19646959	X_19646959_SNP [dm3] X_19752926_SNP [dm6]	G	A	2.494e^-5	0.92	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	16171867	X_16171867_SNP [dm3] X_16277834_SNP [dm6]	A	T	2.638e^-5	0.92	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17220034	2R_17220034_SNP [dm3] 2R_21332529_SNP [dm6]	A	T	2.921e^-5	0.92	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-A2589c	TF binding site mE1_TFBS_cad
3L	517362	3L_517362_SNP [dm3] 3L_517362_SNP [dm6]	T	A	2.942e^-5	0.92	INTRON klar
3R	19062061	3R_19062061_SNP [dm3] 3R_23236339_SNP [dm6]	A	T	3.024e^-5	0.92	INTRON CG4467
2L	10956528	2L_10956528_SNP [dm3] 2L_10956528_SNP [dm6]	T	G	3.040e^-5	0.92	INTRON dpr2
2R	14890425	2R_14890425_SNP [dm3] 2R_19002920_SNP [dm6]	C	T	3.048e^-5	0.92	UTR_3_PRIME tn INTRON tn
3R	24579135	3R_24579135_SNP [dm3] 3R_28753413_SNP [dm6]	C	T	3.125e^-5	0.92	INTERGENIC
3L	18034476	3L_18034476_SNP [dm3] 3L_18041376_SNP [dm6]	T	C	3.285e^-5	0.92	INTRON Eip75B & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18643452	2R_18643452_SNP [dm3] 2R_22755947_SNP [dm6]	A	G	3.315e^-5	0.92	UPSTREAM CR30267 DOWNSTREAM CG13526 INTRON CG42260	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14417449	2R_14417449_INS [dm3] 2R_18529944_INS [dm6]	A	AA	3.473e^-5	0.92	INTRON CG10924	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15874214	3L_15874214_SNP [dm3] 3L_15881114_SNP [dm6]	T	A	3.511e^-5	0.92	INTRON pHCl
2L	2585992	2L_2585992_SNP [dm3] 2L_2585992_SNP [dm6]	A	C	3.694e^-5	0.92	UPSTREAM Drp1 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18958333	3R_18958333_SNP [dm3] 3R_23132611_SNP [dm6]	G	A	3.883e^-5	0.92	INTRON hh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17358511	3R_17358511_DEL [dm3] 3R_21532789_DEL [dm6]	TTATGTAAAG	T	3.902e^-5	0.92	INTRON CR43372
2R	9052468	2R_9052468_SNP [dm3] 2R_13164963_SNP [dm6]	G	A	3.943e^-5	0.92	INTRON GLaz
3R	7329746	3R_7329746_SNP [dm3] 3R_11504024_SNP [dm6]	T	C	4.237e^-5	0.92	INTRON dpr5
3R	23145161	3R_23145161_SNP [dm3] 3R_27319439_SNP [dm6]	T	C	4.321e^-5	0.92	DOWNSTREAM CR44287 INTRON CG3339	TF binding site mE1_TFBS_chinmo
2R	12809569	2R_12809569_SNP [dm3] 2R_16922064_SNP [dm6]	T	G	4.333e^-5	0.92	INTERGENIC
2L	14787326	2L_14787326_SNP [dm3] 2L_14787326_SNP [dm6]	C	T	4.358e^-5	0.92	INTERGENIC
3L	3193101	3L_3193101_SNP [dm3] 3L_3193101_SNP [dm6]	C	T	4.491e^-5	0.92	UTR_5_PRIME Hsp83 UPSTREAM Hsp83 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	2408859	2R_2408859_SNP [dm3] 2R_6521354_SNP [dm6]	A	T	4.533e^-5	0.92	INTRON jing
3L	6974392	3L_6974392_SNP [dm3] 3L_6981292_SNP [dm6]	A	C	4.575e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11433230	3L_11433230_SNP [dm3] 3L_11440130_SNP [dm6]	C	T	4.580e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12799626	2R_12799626_SNP [dm3] 2R_16912121_SNP [dm6]	T	C	4.607e^-5	0.92	INTERGENIC
X	15498914	X_15498914_INS [dm3] X_15604881_INS [dm6]	T	GA	4.613e^-5	0.92	UTR_3_PRIME sog	TF binding site BDTNP1_TFBS_dl
2L	15567434	2L_15567434_SNP [dm3] 2L_15567434_SNP [dm6]	A	C	4.628e^-5	0.92	INTRON kek3
2L	15567435	2L_15567435_SNP [dm3] 2L_15567435_SNP [dm6]	G	A	4.628e^-5	0.92	INTRON kek3
3L	8865817	3L_8865817_SNP [dm3] 3L_8872717_SNP [dm6]	A	G	4.663e^-5	0.92	INTRON dally	TF binding site BDTNP1_TFBS_twi
X	19646998	X_19646998_SNP [dm3] X_19752965_SNP [dm6]	A	G	4.674e^-5	0.92	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens
3L	22591076	3L_22591076_SNP [dm3] 3L_22597976_SNP [dm6]	A	C	4.686e^-5	0.92	INTRON CG14459
3R	19840221	3R_19840221_SNP [dm3] 3R_24014499_SNP [dm6]	A	T	4.731e^-5	0.92	INTRON KrT95D
3R	19228229	3R_19228229_SNP [dm3] 3R_23402507_SNP [dm6]	A	G	4.791e^-5	0.92	UPSTREAM Ir94d DOWNSTREAM CG17380 INTERGENIC
2R	10914693	2R_10914693_SNP [dm3] 2R_15027188_SNP [dm6]	C	T	4.817e^-5	0.92	INTRON hbs	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	18227469	2L_18227469_SNP [dm3] 2L_18227469_SNP [dm6]	T	C	4.827e^-5	0.92	INTRON CG42750
3L	8474200	3L_8474200_SNP [dm3] 3L_8481100_SNP [dm6]	G	A	4.846e^-5	0.92	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21623173	3L_21623173_SNP [dm3] 3L_21630073_SNP [dm6]	A	G	4.921e^-5	0.92	DOWNSTREAM MED1 INTRON MED1
3L	3769838	3L_3769838_SNP [dm3] 3L_3769838_SNP [dm6]	T	A	4.931e^-5	0.92	INTRON CG32264
2R	5292972	2R_5292972_SNP [dm3] 2R_9405467_SNP [dm6]	G	A	4.989e^-5	0.92	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	15567445	2L_15567445_SNP [dm3] 2L_15567445_SNP [dm6]	A	T	5.048e^-5	0.92	INTRON kek3
3R	16581131	3R_16581131_SNP [dm3] 3R_20755409_SNP [dm6]	G	A	5.068e^-5	0.92	SYNONYMOUS_CODING CG42322 UTR_3_PRIME CG42322	TF binding site mE1_TFBS_inv
3R	2625682	3R_2625682_DEL [dm3] 3R_6799960_DEL [dm6]	TT	T	5.105e^-5	0.92	INTRON Dfd	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cnc
2L	4154259	2L_4154259_SNP [dm3] 2L_4154259_SNP [dm6]	C	A	5.153e^-5	0.92	INTERGENIC
3L	21602306	3L_21602306_SNP [dm3] 3L_21609206_SNP [dm6]	A	C	5.157e^-5	0.92	INTRON TfAP-2
3L	1825378	3L_1825378_SNP [dm3] 3L_1825378_SNP [dm6]	A	T	5.167e^-5	0.92	INTRON Cpr62Ba
3L	9746241	3L_9746241_DEL [dm3] 3L_9753141_DEL [dm6]	TGTTGCT	T	5.179e^-5	0.92	CODON_DELETION CG42268
2R	14887846	2R_14887846_SNP [dm3] 2R_19000341_SNP [dm6]	C	T	5.335e^-5	0.92	INTRON tn
3R	10187046	3R_10187046_SNP [dm3] 3R_14361324_SNP [dm6]	A	T	5.478e^-5	0.92	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_HSA
X	3811411	X_3811411_SNP [dm3] X_3917378_SNP [dm6]	A	T	5.480e^-5	0.92	INTRON CG42541
X	19231182	X_19231182_SNP [dm3] X_19337149_SNP [dm6]	G	A	5.508e^-5	0.92	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl
2R	4799005	2R_4799005_SNP [dm3] 2R_8911500_SNP [dm6]	A	G	5.626e^-5	0.92	NON_SYNONYMOUS_CODING Pgi DOWNSTREAM CG30349	TF binding site mE1_TFBS_cad
3R	2600402	3R_2600402_SNP [dm3] 3R_6774680_SNP [dm6]	A	G	5.684e^-5	0.92	INTRON CR42721	TF binding site mE1_TFBS_cad
3L	7873543	3L_7873543_SNP [dm3] 3L_7880443_SNP [dm6]	C	T	5.713e^-5	0.92	INTRON CG32365
3L	16255274	3L_16255274_SNP [dm3] 3L_16262174_SNP [dm6]	T	G	5.817e^-5	0.92	UPSTREAM CG34247 & 1 other INTERGENIC
3R	12809551	3R_12809551_SNP [dm3] 3R_16983829_SNP [dm6]	G	T	5.875e^-5	0.92	NON_SYNONYMOUS_CODING CG18622	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7313744	2R_7313744_INS [dm3] 2R_11426239_INS [dm6]	A	AGTAAAATGGCTGAA...	6.024e^-5	0.92	INTRON Drip
3L	3193430	3L_3193430_SNP [dm3] 3L_3193430_SNP [dm6]	C	A	6.065e^-5	0.92	UPSTREAM CG14965 INTRON Hsp83	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	9427113	3L_9427113_SNP [dm3] 3L_9434013_SNP [dm6]	C	T	6.073e^-5	0.92	SYNONYMOUS_CODING MTF-1 START_GAINED MTF-1 UTR_5_PRIME MTF-1 UTR_3_PRIME CG42526 INTRON MTF-1
2L	1091160	2L_1091160_INS [dm3] 2L_1091160_INS [dm6]	G	GT	6.117e^-5	0.92	INTRON CG4629
X	12854630	X_12854630_SNP [dm3] X_12960597_SNP [dm6]	G	A	6.134e^-5	0.92	UTR_3_PRIME CG32642
X	2810429	X_2810429_SNP [dm3] X_2916396_SNP [dm6]	C	T	6.331e^-5	0.92	INTRON kirre
3L	18037025	3L_18037025_SNP [dm3] 3L_18043925_SNP [dm6]	A	T	6.492e^-5	0.92	INTRON Eip75B & 1 other
2L	16683189	2L_16683189_SNP [dm3] 2L_16683189_SNP [dm6]	C	T	6.522e^-5	0.92	UTR_3_PRIME CG33552 UPSTREAM CG31807 INTRON grp & 1 other
3L	11433233	3L_11433233_INS [dm3] 3L_11440133_INS [dm6]	A	ACGCC	6.612e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11433235	3L_11433235_INS [dm3] 3L_11440135_INS [dm6]	A	ACAAAGCAATCTATTTG...	6.612e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11433239	3L_11433239_SNP [dm3] 3L_11440139_SNP [dm6]	A	T	6.612e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15768859	3L_15768859_SNP [dm3] 3L_15775759_SNP [dm6]	A	T	6.722e^-5	0.92	INTERGENIC	TF binding site mE1_TFBS_inv
3R	2598206	3R_2598206_SNP [dm3] 3R_6772484_SNP [dm6]	T	A	6.736e^-5	0.92	INTRON CR42721
3L	8877904	3L_8877904_SNP [dm3] 3L_8884804_SNP [dm6]	A	G	6.752e^-5	0.92	INTRON dally
2R	7144265	2R_7144265_SNP [dm3] 2R_11256760_SNP [dm6]	C	T	6.942e^-5	0.92	SYNONYMOUS_CODING CG13223 DOWNSTREAM Cpr47Eb
3L	21602857	3L_21602857_SNP [dm3] 3L_21609757_SNP [dm6]	T	C	6.953e^-5	0.92	SYNONYMOUS_CODING TfAP-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	14079594	2R_14079594_SNP [dm3] 2R_18192089_SNP [dm6]	G	A	6.985e^-5	0.92	INTRON CG33958
3L	4885243	3L_4885243_SNP [dm3] 3L_4885243_SNP [dm6]	T	A	7.005e^-5	0.92	SYNONYMOUS_CODING CG17150
2R	9976034	2R_9976034_SNP [dm3] 2R_14088529_SNP [dm6]	A	G	7.030e^-5	0.92	INTRON Prosap
2L	2585991	2L_2585991_SNP [dm3] 2L_2585991_SNP [dm6]	T	C	7.070e^-5	0.92	UPSTREAM Drp1 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15874204	3L_15874204_SNP [dm3] 3L_15881104_SNP [dm6]	A	T	7.145e^-5	0.92	INTRON pHCl
3L	517360	3L_517360_SNP [dm3] 3L_517360_SNP [dm6]	G	C	7.151e^-5	0.92	INTRON klar
3L	15874200	3L_15874200_SNP [dm3] 3L_15881100_SNP [dm6]	A	G	7.167e^-5	0.92	INTRON pHCl
3R	2598825	3R_2598825_SNP [dm3] 3R_6773103_SNP [dm6]	C	G	7.269e^-5	0.92	INTRON CR42721
X	5408875	X_5408875_SNP [dm3] X_5514842_SNP [dm6]	A	G	7.320e^-5	0.92	INTERGENIC
2L	9486310	2L_9486310_SNP [dm3] 2L_9486310_SNP [dm6]	C	T	7.405e^-5	0.92	INTERGENIC
3L	8877909	3L_8877909_SNP [dm3] 3L_8884809_SNP [dm6]	A	T	7.459e^-5	0.92	INTRON dally
X	22002802	X_22002802_SNP [dm3] X_22600966_SNP [dm6]	A	G	7.703e^-5	0.92	INTRON Cda4
3L	8474187	3L_8474187_INS [dm3] 3L_8481087_INS [dm6]	A	CAAGTAT	7.728e^-5	0.92	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8474190	3L_8474190_DEL [dm3] 3L_8481090_DEL [dm6]	TGAT	T	7.728e^-5	0.92	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8346486	3L_8346486_SNP [dm3] 3L_8353386_SNP [dm6]	C	T	7.779e^-5	0.92	NON_SYNONYMOUS_CODING CG17352 SYNONYMOUS_CODING CG17352 UTR_3_PRIME CG17352 DOWNSTREAM mir-4913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14272541	2R_14272541_SNP [dm3] 2R_18385036_SNP [dm6]	C	T	7.788e^-5	0.92	UTR_3_PRIME CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad
3L	22146627	3L_22146627_SNP [dm3] 3L_22153527_SNP [dm6]	G	A	7.804e^-5	0.92	INTRON olf413
3R	7313631	3R_7313631_SNP [dm3] 3R_11487909_SNP [dm6]	T	C	7.835e^-5	0.92	DOWNSTREAM CR45581 INTERGENIC
2R	7295906	2R_7295906_SNP [dm3] 2R_11408401_SNP [dm6]	A	T	7.964e^-5	0.92	DOWNSTREAM CG30026 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	9052457	2R_9052457_SNP [dm3] 2R_13164952_SNP [dm6]	T	C	7.980e^-5	0.92	INTRON GLaz
2L	6267746	2L_6267746_SNP [dm3] 2L_6267746_SNP [dm6]	A	G	8.010e^-5	0.92	INTRON Ddr
3R	18816756	3R_18816756_SNP [dm3] 3R_22991034_SNP [dm6]	T	G	8.090e^-5	0.92	DOWNSTREAM Or94b INTRON Nha2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21608350	3L_21608350_SNP [dm3] 3L_21615250_SNP [dm6]	A	G	8.107e^-5	0.92	SYNONYMOUS_CODING S1P
3R	7327483	3R_7327483_SNP [dm3] 3R_11501761_SNP [dm6]	C	T	8.134e^-5	0.92	INTRON dpr5	TF binding site mE1_TFBS_Kr
3R	24580256	3R_24580256_SNP [dm3] 3R_28754534_SNP [dm6]	C	T	8.180e^-5	0.92	DOWNSTREAM CG9997 INTERGENIC	TF binding site mE1_TFBS_inv
3R	12809549	3R_12809549_SNP [dm3] 3R_16983827_SNP [dm6]	A	G	8.209e^-5	0.92	SYNONYMOUS_CODING CG18622	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	18048553	X_18048553_SNP [dm3] X_18154520_SNP [dm6]	A	T	8.238e^-5	0.92	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18820760	3R_18820760_SNP [dm3] 3R_22995038_SNP [dm6]	A	T	8.256e^-5	0.92	INTRON Nha2
3L	9356015	3L_9356015_SNP [dm3] 3L_9362915_SNP [dm6]	G	C	8.393e^-5	0.92	UTR_3_PRIME Klp67A DOWNSTREAM CG34455 & 1 other
3L	1522730	3L_1522730_SNP [dm3] 3L_1522730_SNP [dm6]	A	G	8.505e^-5	0.92	SYNONYMOUS_CODING Psa DOWNSTREAM CG12090	TF binding site mE1_TFBS_cad
3R	18812476	3R_18812476_SNP [dm3] 3R_22986754_SNP [dm6]	G	T	8.560e^-5	0.92	UPSTREAM Or94a INTRON Nha2	TF binding site mE1_TFBS_cad
2R	9462220	2R_9462220_SNP [dm3] 2R_13574715_SNP [dm6]	C	T	8.566e^-5	0.92	UPSTREAM CR44365 & 1 other INTERGENIC
X	17442267	X_17442267_SNP [dm3] X_17548234_SNP [dm6]	G	A	8.660e^-5	0.92	INTRON CG43658
3R	18923912	3R_18923912_SNP [dm3] 3R_23098190_SNP [dm6]	T	A	8.670e^-5	0.92	SYNONYMOUS_CODING CG6733 DOWNSTREAM CG17109 INTRON CG13830	TF binding site mE1_TFBS_sens
3L	21625788	3L_21625788_SNP [dm3] 3L_21632688_SNP [dm6]	G	A	8.813e^-5	0.92	SYNONYMOUS_CODING MED1	TF binding site mE1_TFBS_HSA
2R	17220757	2R_17220757_SNP [dm3] 2R_21333252_SNP [dm6]	T	A	8.877e^-5	0.92	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18836328	3R_18836328_SNP [dm3] 3R_23010606_SNP [dm6]	G	A	8.970e^-5	0.92	UPSTREAM CG34375 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22588240	3L_22588240_SNP [dm3] 3L_22595140_SNP [dm6]	A	G	9.002e^-5	0.92	INTRON CG14459
X	19647288	X_19647288_SNP [dm3] X_19753255_SNP [dm6]	G	A	9.012e^-5	0.92	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	17221225	2R_17221225_SNP [dm3] 2R_21333720_SNP [dm6]	A	G	9.058e^-5	0.92	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a & 1 other	TF binding site mE1_TFBS_cad
3R	3563718	3R_3563718_SNP [dm3] 3R_7737996_SNP [dm6]	T	A	9.178e^-5	0.92	DOWNSTREAM CG43254 INTERGENIC
3R	17544820	3R_17544820_SNP [dm3] 3R_21719098_SNP [dm6]	G	A	9.182e^-5	0.92	SYNONYMOUS_CODING CG31176	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	21625599	3L_21625599_SNP [dm3] 3L_21632499_SNP [dm6]	T	C	9.214e^-5	0.92	SYNONYMOUS_CODING MED1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5296215	2L_5296215_SNP [dm3] 2L_5296215_SNP [dm6]	G	A	9.217e^-5	0.92	INTRON vri
2L	8010187	2L_8010187_SNP [dm3] 2L_8010187_SNP [dm6]	C	A	9.319e^-5	0.92	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24580039	3R_24580039_SNP [dm3] 3R_28754317_SNP [dm6]	T	C	9.433e^-5	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19058794	3R_19058794_SNP [dm3] 3R_23233072_SNP [dm6]	A	T	9.674e^-5	0.92	SYNONYMOUS_CODING CG4467	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12809899	3R_12809899_SNP [dm3] 3R_16984177_SNP [dm6]	T	C	9.864e^-5	0.92	INTRON CG18622	TF binding site mE1_TFBS_cad
2L	15816419	2L_15816419_SNP [dm3] 2L_15816419_SNP [dm6]	C	A	9.895e^-5	0.92	INTERGENIC
2R	15901302	2R_15901302_SNP [dm3] 2R_20013797_SNP [dm6]	T	A	9.989e^-5	0.92	UPSTREAM CR44629 INTERGENIC
X	18048531	X_18048531_SNP [dm3] X_18154498_SNP [dm6]	A	C	1.003e^-4	0.92	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16899568	2R_16899568_SNP [dm3] 2R_21012063_SNP [dm6]	T	C	1.013e^-4	0.92	SYNONYMOUS_CODING CG9346 UPSTREAM grau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	16685476	2L_16685476_SNP [dm3] 2L_16685476_SNP [dm6]	A	T	1.014e^-4	0.92	START_GAINED grp UTR_5_PRIME grp INTRON grp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16685477	2L_16685477_SNP [dm3] 2L_16685477_SNP [dm6]	T	C	1.014e^-4	0.92	UTR_5_PRIME grp INTRON grp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4125573	3L_4125573_SNP [dm3] 3L_4125573_SNP [dm6]	C	T	1.015e^-4	0.92	SPLICE_SITE_REGION ens INTRON ens	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11433231	3L_11433231_SNP [dm3] 3L_11440131_SNP [dm6]	T	C	1.018e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20486319	X_20486319_SNP [dm3] X_20615292_SNP [dm6]	A	T	1.021e^-4	0.92	INTRON RunxA
X	16172123	X_16172123_SNP [dm3] X_16278090_SNP [dm6]	A	G	1.021e^-4	0.92	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	4277288	X_4277288_SNP [dm3] X_4383255_SNP [dm6]	G	A	1.026e^-4	0.92	DOWNSTREAM CG12688 INTERGENIC
3L	5547679	3L_5547679_SNP [dm3] 3L_5554579_SNP [dm6]	T	C	1.027e^-4	0.92	INTERGENIC
2R	17221454	2R_17221454_SNP [dm3] 2R_21333949_SNP [dm6]	C	T	1.028e^-4	0.92	UPSTREAM snoRNA:Psi18S-1389b INTRON dom EXON snoRNA:Psi18S-1389a	TF binding site mE1_TFBS_cad
3L	14172485	3L_14172485_SNP [dm3] 3L_14179385_SNP [dm6]	A	C	1.034e^-4	0.92	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
3L	21640374	3L_21640374_SNP [dm3] 3L_21647274_SNP [dm6]	A	G	1.039e^-4	0.92	INTRON CG43980
3R	13656425	3R_13656425_SNP [dm3] 3R_17830703_SNP [dm6]	G	A	1.040e^-4	0.92	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12854963	X_12854963_SNP [dm3] X_12960930_SNP [dm6]	C	T	1.043e^-4	0.92	DOWNSTREAM CG32642 INTERGENIC
2L	8010256	2L_8010256_SNP [dm3] 2L_8010256_SNP [dm6]	G	T	1.047e^-4	0.92	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9052354	2R_9052354_SNP [dm3] 2R_13164849_SNP [dm6]	T	C	1.048e^-4	0.92	UPSTREAM CG15870 INTRON GLaz
2R	9052378	2R_9052378_SNP [dm3] 2R_13164873_SNP [dm6]	C	T	1.048e^-4	0.92	UPSTREAM CG15870 INTRON GLaz
2R	17141678	2R_17141678_SNP [dm3] 2R_21254173_SNP [dm6]	G	A	1.051e^-4	0.92	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_inv
2L	10869920	2L_10869920_SNP [dm3] 2L_10869920_SNP [dm6]	C	A	1.051e^-4	0.92	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	2380490	3L_2380490_DEL [dm3] 3L_2380490_DEL [dm6]	GCG	G	1.053e^-4	0.92	INTRON CG45186
3R	24579593	3R_24579593_SNP [dm3] 3R_28753871_SNP [dm6]	C	T	1.054e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14272266	2R_14272266_SNP [dm3] 2R_18384761_SNP [dm6]	A	G	1.055e^-4	0.92	NON_SYNONYMOUS_CODING CG18107 SPLICE_SITE_REGION CG18107 DOWNSTREAM CG15067 & 1 other	TF binding site mE1_TFBS_HSA
2R	10727922	2R_10727922_SNP [dm3] 2R_14840417_SNP [dm6]	A	G	1.057e^-4	0.92	INTERGENIC
3R	19435295	3R_19435295_SNP [dm3] 3R_23609573_SNP [dm6]	T	A	1.059e^-4	0.92	INTRON CG31145
2L	16683213	2L_16683213_INS [dm3] 2L_16683213_INS [dm6]	T	TGAACATTTCA...	1.061e^-4	0.92	UTR_3_PRIME CG33552 UPSTREAM CG31807 INTRON grp & 1 other
2L	16683215	2L_16683215_DEL [dm3] 2L_16683215_DEL [dm6]	CAATTTCCCTTATTCAA...	C	1.061e^-4	0.92	UTR_3_PRIME CG33552 UPSTREAM CG31807 INTRON grp & 1 other	TF binding site BDTNP1_TFBS_dl
2L	16684381	2L_16684381_SNP [dm3] 2L_16684381_SNP [dm6]	T	A	1.061e^-4	0.92	UPSTREAM CG31807 INTRON grp	TF binding site BDTNP1_TFBS_dl
2L	16684641	2L_16684641_SNP [dm3] 2L_16684641_SNP [dm6]	C	T	1.061e^-4	0.92	UPSTREAM CG31807 & 1 other INTRON grp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16685480	2L_16685480_SNP [dm3] 2L_16685480_SNP [dm6]	A	T	1.061e^-4	0.92	UTR_5_PRIME grp INTRON grp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19715564	2R_19715564_SNP [dm3] 2R_23828041_SNP [dm6]	T	A	1.070e^-4	0.92	INTRON CG5549
2R	17221325	2R_17221325_SNP [dm3] 2R_21333820_SNP [dm6]	C	T	1.071e^-4	0.92	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a & 1 other	TF binding site mE1_TFBS_cad
3L	9353305	3L_9353305_SNP [dm3] 3L_9360205_SNP [dm6]	G	A	1.085e^-4	0.92	UPSTREAM CG34455 DOWNSTREAM CG32039 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	13656566	3R_13656566_SNP [dm3] 3R_17830844_SNP [dm6]	T	C	1.086e^-4	0.92	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12285821	2R_12285821_DEL [dm3] 2R_16398316_DEL [dm6]	AA	A	1.087e^-4	0.92	UPSTREAM Sema-2b INTRON Sema-2b	TF binding site mE1_TFBS_cad
3R	18846475	3R_18846475_SNP [dm3] 3R_23020753_SNP [dm6]	G	A	1.100e^-4	0.92	DOWNSTREAM lmd INTERGENIC
3L	18203808	3L_18203808_SNP [dm3] 3L_18210708_SNP [dm6]	A	G	1.110e^-4	0.92	INTERGENIC
3R	13896354	3R_13896354_SNP [dm3] 3R_18070632_SNP [dm6]	T	G	1.123e^-4	0.92	INTERGENIC
X	16171859	X_16171859_SNP [dm3] X_16277826_SNP [dm6]	G	T	1.125e^-4	0.92	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5292973	2R_5292973_SNP [dm3] 2R_9405468_SNP [dm6]	G	A	1.129e^-4	0.92	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	3011157	X_3011157_SNP [dm3] X_3117124_SNP [dm6]	C	T	1.133e^-4	0.92	INTRON kirre
3L	11433240	3L_11433240_SNP [dm3] 3L_11440140_SNP [dm6]	C	T	1.135e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2392820	2R_2392820_SNP [dm3] 2R_6505315_SNP [dm6]	A	G	1.152e^-4	0.92	INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	23642177	3R_23642177_SNP [dm3] 3R_27816455_SNP [dm6]	A	G	1.152e^-4	0.92	INTRON CG34353
2R	7313820	2R_7313820_SNP [dm3] 2R_11426315_SNP [dm6]	G	C	1.157e^-4	0.92	INTRON Drip
2L	16684415	2L_16684415_SNP [dm3] 2L_16684415_SNP [dm6]	T	C	1.158e^-4	0.92	UPSTREAM CG31807 & 1 other INTRON grp	TF binding site BDTNP1_TFBS_dl
3L	14172486	3L_14172486_INS [dm3] 3L_14179386_INS [dm6]	A	AGGGACAATC	1.165e^-4	0.92	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
2R	14789202	2R_14789202_SNP [dm3] 2R_18901697_SNP [dm6]	T	C	1.172e^-4	0.92	INTRON sano
X	19645981	X_19645981_SNP [dm3] X_19751948_SNP [dm6]	T	A	1.181e^-4	0.92	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10727960	2R_10727960_SNP [dm3] 2R_14840455_SNP [dm6]	T	C	1.184e^-4	0.92	INTERGENIC
X	10011435	X_10011435_SNP [dm3] X_10117402_SNP [dm6]	T	C	1.208e^-4	0.92	INTRON RhoU & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	3471683	X_3471683_SNP [dm3] X_3577650_SNP [dm6]	G	T	1.217e^-4	0.92	INTRON AstA-R1
X	16171720	X_16171720_SNP [dm3] X_16277687_SNP [dm6]	A	T	1.218e^-4	0.92	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24655438	3R_24655438_DEL [dm3] 3R_28829716_DEL [dm6]	AA	T	1.227e^-4	0.92	INTRON WASp
2L	9997605	2L_9997605_SNP [dm3] 2L_9997605_SNP [dm6]	G	C	1.229e^-4	0.92	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3L	14172481	3L_14172481_INS [dm3] 3L_14179381_INS [dm6]	T	TCCAACAGA	1.230e^-4	0.92	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
2R	19715566	2R_19715566_SNP [dm3] 2R_23828043_SNP [dm6]	T	A	1.230e^-4	0.92	INTRON CG5549
2R	19715571	2R_19715571_SNP [dm3] 2R_23828048_SNP [dm6]	C	T	1.230e^-4	0.92	INTRON CG5549
X	4278790	X_4278790_SNP [dm3] X_4384757_SNP [dm6]	C	G	1.232e^-4	0.92	INTERGENIC
3R	8113054	3R_8113054_SNP [dm3] 3R_12287332_SNP [dm6]	G	C	1.235e^-4	0.92	INTRON svp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7582619	2L_7582619_SNP [dm3] 2L_7582619_SNP [dm6]	C	T	1.240e^-4	0.92	SYNONYMOUS_CODING Spn28B	TF binding site mE1_TFBS_HSA
2R	17221297	2R_17221297_SNP [dm3] 2R_21333792_SNP [dm6]	T	C	1.241e^-4	0.92	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a & 1 other	TF binding site mE1_TFBS_cad
X	22003635	X_22003635_SNP [dm3] X_22601799_SNP [dm6]	G	T	1.242e^-4	0.92	INTRON Cda4
X	20486180	X_20486180_SNP [dm3] X_20615153_SNP [dm6]	G	A	1.249e^-4	0.92	INTRON RunxA	transposable element FlyBase
X	4278842	X_4278842_DEL [dm3] X_4384809_DEL [dm6]	CC	T	1.250e^-4	0.92	INTERGENIC
X	4279098	X_4279098_SNP [dm3] X_4385065_SNP [dm6]	T	A	1.250e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs
3R	13892357	3R_13892357_SNP [dm3] 3R_18066635_SNP [dm6]	A	C	1.253e^-4	0.92	INTERGENIC
2L	5296228	2L_5296228_SNP [dm3] 2L_5296228_SNP [dm6]	A	T	1.253e^-4	0.92	INTRON vri
3L	8877929	3L_8877929_MNP [dm3] 3L_8884829_MNP [dm6]	ATT	TAC	1.274e^-4	0.92	INTRON dally
X	4278847	X_4278847_SNP [dm3] X_4384814_SNP [dm6]	T	A	1.277e^-4	0.92	INTERGENIC
2L	8010214	2L_8010214_SNP [dm3] 2L_8010214_SNP [dm6]	G	C	1.297e^-4	0.92	NON_SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7470784	2L_7470784_SNP [dm3] 2L_7470784_SNP [dm6]	A	G	1.298e^-4	0.92	UPSTREAM CG6055 INTRON CG6055
X	16633142	X_16633142_SNP [dm3] X_16739109_SNP [dm6]	T	A	1.300e^-4	0.92	DOWNSTREAM TwdlZ INTRON CG9634
3R	5741508	3R_5741508_SNP [dm3] 3R_9915786_SNP [dm6]	C	T	1.302e^-4	0.92	INTRON Glut4EF
2R	10727949	2R_10727949_SNP [dm3] 2R_14840444_SNP [dm6]	A	G	1.304e^-4	0.92	INTERGENIC
2R	8169159	2R_8169159_SNP [dm3] 2R_12281654_SNP [dm6]	G	T	1.314e^-4	0.92	INTRON CG42700
X	7728936	X_7728936_SNP [dm3] X_7834903_SNP [dm6]	G	C	1.318e^-4	0.92	INTRON CG1402
2R	9168067	2R_9168067_SNP [dm3] 2R_13280562_SNP [dm6]	A	G	1.328e^-4	0.92	INTRON Dh31-R
3R	19099216	3R_19099216_SNP [dm3] 3R_23273494_SNP [dm6]	G	C	1.329e^-4	0.92	INTRON orb
X	12854931	X_12854931_SNP [dm3] X_12960898_SNP [dm6]	A	G	1.332e^-4	0.92	DOWNSTREAM CG32642 INTERGENIC
X	5717154	X_5717154_SNP [dm3] X_5823121_SNP [dm6]	A	G	1.336e^-4	0.92	INTRON CG15765
2R	19445685	2R_19445685_SNP [dm3] 2R_23558162_SNP [dm6]	G	C	1.337e^-4	0.92	SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3562790	2R_3562790_SNP [dm3] 2R_7675285_SNP [dm6]	C	A	1.339e^-4	0.92	UTR_3_PRIME CG12107 UPSTREAM mRpL52 DOWNSTREAM U2A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5296233	2L_5296233_SNP [dm3] 2L_5296233_SNP [dm6]	C	T	1.341e^-4	0.92	INTRON vri
2L	7528910	2L_7528910_SNP [dm3] 2L_7528910_SNP [dm6]	C	G	1.342e^-4	0.92	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19099243	3R_19099243_SNP [dm3] 3R_23273521_SNP [dm6]	T	C	1.343e^-4	0.92	INTRON orb
2R	17221447	2R_17221447_SNP [dm3] 2R_21333942_SNP [dm6]	T	C	1.352e^-4	0.92	UPSTREAM snoRNA:Psi18S-1389b INTRON dom EXON snoRNA:Psi18S-1389a	TF binding site mE1_TFBS_cad
X	19646984	X_19646984_SNP [dm3] X_19752951_SNP [dm6]	C	A	1.355e^-4	0.92	INTRON Pmp70	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens
X	4278825	X_4278825_SNP [dm3] X_4384792_SNP [dm6]	G	A	1.357e^-4	0.92	INTERGENIC
X	3771176	X_3771176_SNP [dm3] X_3877143_SNP [dm6]	A	G	1.359e^-4	0.92	SYNONYMOUS_CODING CG2930
3R	5738129	3R_5738129_SNP [dm3] 3R_9912407_SNP [dm6]	C	T	1.362e^-4	0.92	INTRON Glut4EF
2L	11174870	2L_11174870_SNP [dm3] 2L_11174870_SNP [dm6]	A	G	1.366e^-4	0.92	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19715573	2R_19715573_SNP [dm3] 2R_23828050_SNP [dm6]	T	A	1.377e^-4	0.92	INTRON CG5549
2L	10869921	2L_10869921_SNP [dm3] 2L_10869921_SNP [dm6]	T	C	1.380e^-4	0.92	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	2124231	2R_2124231_SNP [dm3] 2R_6236726_SNP [dm6]	A	T	1.384e^-4	0.92	INTRON bin3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9838648	3L_9838648_SNP [dm3] 3L_9845548_SNP [dm6]	T	C	1.390e^-4	0.92	INTRON RasGAP1
X	9568119	X_9568119_SNP [dm3] X_9674086_SNP [dm6]	G	A	1.398e^-4	0.92	SYNONYMOUS_CODING nej	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
3R	10186999	3R_10186999_MNP [dm3] 3R_14361277_MNP [dm6]	TTG	GCT	1.399e^-4	0.92	UTR_5_PRIME CG31320 INTRON NK7.1
2R	4879864	2R_4879864_SNP [dm3] 2R_8992359_SNP [dm6]	G	T	1.403e^-4	0.92	DOWNSTREAM Np INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10960163	2R_10960163_SNP [dm3] 2R_15072658_SNP [dm6]	A	G	1.404e^-4	0.92	INTERGENIC
2L	12075213	2L_12075213_SNP [dm3] 2L_12075213_SNP [dm6]	A	C	1.407e^-4	0.92	UPSTREAM CG14947 INTERGENIC
3R	18925228	3R_18925228_DEL [dm3] 3R_23099506_DEL [dm6]	CATATAAAG	C	1.413e^-4	0.92	UPSTREAM CG6738 DOWNSTREAM CG6733 INTRON CG13830
2R	17028658	2R_17028658_SNP [dm3] 2R_21141153_SNP [dm6]	C	A	1.427e^-4	0.92	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	4600348	2R_4600348_SNP [dm3] 2R_8712843_SNP [dm6]	A	G	1.428e^-4	0.92	UPSTREAM PGRP-SC1b INTRON CG14743
2R	17221402	2R_17221402_SNP [dm3] 2R_21333897_SNP [dm6]	T	G	1.448e^-4	0.92	UPSTREAM snoRNA:Psi18S-1389a & 1 other INTRON dom	TF binding site mE1_TFBS_cad
2R	8313981	2R_8313981_SNP [dm3] 2R_12426476_SNP [dm6]	C	A	1.471e^-4	0.92	SYNONYMOUS_CODING CG8525 DOWNSTREAM CG13154	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8652764	2L_8652764_SNP [dm3] 2L_8652764_SNP [dm6]	T	G	1.478e^-4	0.92	INTRON Sema-1a
3L	1522718	3L_1522718_SNP [dm3] 3L_1522718_SNP [dm6]	A	G	1.483e^-4	0.92	SYNONYMOUS_CODING Psa DOWNSTREAM CG12090	TF binding site mE1_TFBS_cad
2R	9052409	2R_9052409_SNP [dm3] 2R_13164904_SNP [dm6]	A	G	1.484e^-4	0.92	UPSTREAM CG15870 INTRON GLaz
3R	19052792	3R_19052792_SNP [dm3] 3R_23227070_SNP [dm6]	T	G	1.486e^-4	0.92	UPSTREAM cnc DOWNSTREAM CG4467 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	18915193	3R_18915193_SNP [dm3] 3R_23089471_SNP [dm6]	T	C	1.486e^-4	0.92	INTRON CG13830
3L	8881985	3L_8881985_SNP [dm3] 3L_8888885_SNP [dm6]	T	C	1.490e^-4	0.92	UPSTREAM CG43169 INTRON dally
2L	9968800	2L_9968800_SNP [dm3] 2L_9968800_SNP [dm6]	T	G	1.491e^-4	0.92	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12810109	3R_12810109_SNP [dm3] 3R_16984387_SNP [dm6]	G	T	1.494e^-4	0.92	INTRON CG18622
X	18048568	X_18048568_INS [dm3] X_18154535_INS [dm6]	A	GTT	1.495e^-4	0.92	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	24684041	3R_24684041_SNP [dm3] 3R_28858319_SNP [dm6]	C	T	1.500e^-4	0.92	INTRON spg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
3R	5741608	3R_5741608_SNP [dm3] 3R_9915886_SNP [dm6]	C	A	1.506e^-4	0.92	INTRON Glut4EF
2R	7307685	2R_7307685_SNP [dm3] 2R_11420180_SNP [dm6]	C	T	1.509e^-4	0.92	INTRON Drip
3L	2377531	3L_2377531_SNP [dm3] 3L_2377531_SNP [dm6]	C	A	1.532e^-4	0.92	UTR_5_PRIME CG15877 UPSTREAM CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4942420	2R_4942420_SNP [dm3] 2R_9054915_SNP [dm6]	T	C	1.532e^-4	0.92	INTRON CG13743
3R	4699081	3R_4699081_DEL [dm3] 3R_8873359_DEL [dm6]	ATGATAGATA	A	1.532e^-4	0.92	INTRON pyd
2R	5297595	2R_5297595_SNP [dm3] 2R_9410090_SNP [dm6]	G	A	1.537e^-4	0.92	UPSTREAM wun INTRON wun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10519366	3L_10519366_SNP [dm3] 3L_10526266_SNP [dm6]	A	T	1.537e^-4	0.92	INTRON A2bp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19901150	2L_19901150_SNP [dm3] 2L_19901150_SNP [dm6]	T	C	1.543e^-4	0.92	INTRON sick
3R	19099234	3R_19099234_DEL [dm3] 3R_23273512_DEL [dm6]	ACT	C	1.544e^-4	0.92	INTRON orb
3R	24134461	3R_24134461_SNP [dm3] 3R_28308739_SNP [dm6]	G	T	1.550e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19218841	2R_19218841_SNP [dm3] 2R_23331318_SNP [dm6]	A	G	1.556e^-4	0.92	INTERGENIC
3R	17544616	3R_17544616_SNP [dm3] 3R_21718894_SNP [dm6]	G	A	1.559e^-4	0.92	SYNONYMOUS_CODING CG31176	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	4354535	X_4354535_DEL [dm3] X_4460502_DEL [dm6]	GA	G	1.559e^-4	0.92	INTRON bi & 1 other
3L	12853107	3L_12853107_SNP [dm3] 3L_12860007_SNP [dm6]	T	A	1.564e^-4	0.92	NON_SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19404101	2R_19404101_SNP [dm3] 2R_23516578_SNP [dm6]	C	G	1.567e^-4	0.92	INTERGENIC
2R	9052379	2R_9052379_SNP [dm3] 2R_13164874_SNP [dm6]	C	T	1.571e^-4	0.92	UPSTREAM CG15870 INTRON GLaz
2R	12995246	2R_12995246_SNP [dm3] 2R_17107741_SNP [dm6]	T	C	1.573e^-4	0.92	DOWNSTREAM CG30456 INTERGENIC
2L	19869083	2L_19869083_SNP [dm3] 2L_19869083_SNP [dm6]	C	T	1.576e^-4	0.92	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA
3L	3810917	3L_3810917_SNP [dm3] 3L_3810917_SNP [dm6]	T	G	1.581e^-4	0.92	NON_SYNONYMOUS_CODING CG32263 UPSTREAM CG32262 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	10326419	3L_10326419_SNP [dm3] 3L_10333319_SNP [dm6]	G	A	1.583e^-4	0.92	INTERGENIC
2R	7395383	2R_7395383_SNP [dm3] 2R_11507878_SNP [dm6]	G	T	1.584e^-4	0.92	UTR_3_PRIME inv DOWNSTREAM inv
3R	19435255	3R_19435255_SNP [dm3] 3R_23609533_SNP [dm6]	G	T	1.584e^-4	0.92	INTRON CG31145
3R	17356328	3R_17356328_SNP [dm3] 3R_21530606_SNP [dm6]	T	A	1.589e^-4	0.92	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7307669	2R_7307669_SNP [dm3] 2R_11420164_SNP [dm6]	A	C	1.590e^-4	0.92	INTRON Drip
3L	10404248	3L_10404248_SNP [dm3] 3L_10411148_SNP [dm6]	C	A	1.594e^-4	0.92	DOWNSTREAM CR43990 EXON CR44543
2L	1149407	2L_1149407_SNP [dm3] 2L_1149407_SNP [dm6]	A	G	1.597e^-4	0.92	UTR_3_PRIME CG4749 DOWNSTREAM Tfb4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1107504	2L_1107504_SNP [dm3] 2L_1107504_SNP [dm6]	G	A	1.602e^-4	0.92	SYNONYMOUS_CODING mtRNApol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	24134280	3R_24134280_SNP [dm3] 3R_28308558_SNP [dm6]	G	A	1.611e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13406514	X_13406514_SNP [dm3] X_13512481_SNP [dm6]	A	T	1.619e^-4	0.92	INTRON Neto
2R	8379888	2R_8379888_SNP [dm3] 2R_12492383_SNP [dm6]	T	C	1.624e^-4	0.92	INTRON fdl
3R	10187066	3R_10187066_SNP [dm3] 3R_14361344_SNP [dm6]	T	G	1.626e^-4	0.92	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5592466	X_5592466_SNP [dm3] X_5698433_SNP [dm6]	G	T	1.628e^-4	0.92	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22224844	3R_22224844_SNP [dm3] 3R_26399122_SNP [dm6]	G	T	1.630e^-4	0.92	INTERGENIC
2R	8380083	2R_8380083_SNP [dm3] 2R_12492578_SNP [dm6]	C	A	1.631e^-4	0.92	INTRON fdl
3R	7327479	3R_7327479_SNP [dm3] 3R_11501757_SNP [dm6]	T	C	1.637e^-4	0.92	INTRON dpr5	TF binding site mE1_TFBS_Kr
2L	5263319	2L_5263319_SNP [dm3] 2L_5263319_SNP [dm6]	T	G	1.645e^-4	0.92	UPSTREAM Cyp4ac1 INTRON tkv
3R	10187249	3R_10187249_SNP [dm3] 3R_14361527_SNP [dm6]	T	C	1.654e^-4	0.92	UTR_5_PRIME CG31320 INTRON NK7.1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4870542	3L_4870542_SNP [dm3] 3L_4870542_SNP [dm6]	G	C	1.657e^-4	0.92	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
3L	4870546	3L_4870546_SNP [dm3] 3L_4870546_SNP [dm6]	G	A	1.657e^-4	0.92	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
2R	7006005	2R_7006005_SNP [dm3] 2R_11118500_SNP [dm6]	C	T	1.659e^-4	0.92	UTR_3_PRIME Cyp12d1-p
3L	4870577	3L_4870577_SNP [dm3] 3L_4870577_SNP [dm6]	T	C	1.666e^-4	0.92	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
3L	2377591	3L_2377591_SNP [dm3] 3L_2377591_SNP [dm6]	T	C	1.699e^-4	0.92	UPSTREAM CG45186 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	14172511	3L_14172511_SNP [dm3] 3L_14179411_SNP [dm6]	A	C	1.704e^-4	0.92	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	16855572	3R_16855572_SNP [dm3] 3R_21029850_SNP [dm6]	C	T	1.706e^-4	0.92	INTRON Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1406666	2L_1406666_SNP [dm3] 2L_1406666_SNP [dm6]	A	G	1.720e^-4	0.92	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17355502	3R_17355502_SNP [dm3] 3R_21529780_SNP [dm6]	C	G	1.725e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12078909	3R_12078909_DEL [dm3] 3R_16253187_DEL [dm6]	TT	T	1.728e^-4	0.92	INTRON tara	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22591455	3L_22591455_SNP [dm3] 3L_22598355_SNP [dm6]	T	A	1.736e^-4	0.92	INTRON CG14459	TF binding site mE1_TFBS_cad
2R	7286293	2R_7286293_SNP [dm3] 2R_11398788_SNP [dm6]	A	T	1.740e^-4	0.92	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	3937039	X_3937039_SNP [dm3] X_4043006_SNP [dm6]	A	T	1.743e^-4	0.92	INTERGENIC
3R	24513351	3R_24513351_SNP [dm3] 3R_28687629_SNP [dm6]	C	T	1.750e^-4	0.92	INTRON CG9990
2R	9052371	2R_9052371_SNP [dm3] 2R_13164866_SNP [dm6]	T	A	1.754e^-4	0.92	UPSTREAM CG15870 INTRON GLaz
2L	2065042	2L_2065042_SNP [dm3] 2L_2065042_SNP [dm6]	T	C	1.758e^-4	0.92	INTRON dpr3
2R	11309942	2R_11309942_DEL [dm3] 2R_15422437_DEL [dm6]	TT	T	1.759e^-4	0.92	DOWNSTREAM CG30472 INTRON CG43729	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12854924	X_12854924_SNP [dm3] X_12960891_SNP [dm6]	T	C	1.759e^-4	0.92	DOWNSTREAM CG32642 INTERGENIC
X	9170381	X_9170381_SNP [dm3] X_9276348_SNP [dm6]	A	G	1.768e^-4	0.92	SYNONYMOUS_CODING c11.1 DOWNSTREAM CG16892
X	14304140	X_14304140_INS [dm3] X_14410107_INS [dm6]	G	GA	1.771e^-4	0.92	INTRON dpr8
3L	8877873	3L_8877873_SNP [dm3] 3L_8884773_SNP [dm6]	A	G	1.778e^-4	0.92	INTRON dally
2L	5290904	2L_5290904_SNP [dm3] 2L_5290904_SNP [dm6]	C	G	1.781e^-4	0.92	INTRON vri
2L	7898211	2L_7898211_SNP [dm3] 2L_7898211_SNP [dm6]	C	A	1.792e^-4	0.92	INTRON Snoo
2L	14788110	2L_14788110_SNP [dm3] 2L_14788110_SNP [dm6]	G	A	1.795e^-4	0.92	INTERGENIC
3R	5740275	3R_5740275_SNP [dm3] 3R_9914553_SNP [dm6]	C	A	1.795e^-4	0.92	INTRON Glut4EF
2L	12026109	2L_12026109_SNP [dm3] 2L_12026109_SNP [dm6]	G	A	1.800e^-4	0.92	UPSTREAM CR44587 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	22042821	3L_22042821_SNP [dm3] 3L_22049721_SNP [dm6]	C	T	1.801e^-4	0.92	INTRON Oct-TyrR
2R	19463611	2R_19463611_SNP [dm3] 2R_23576088_SNP [dm6]	C	G	1.808e^-4	0.92	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18878926	3R_18878926_SNP [dm3] 3R_23053204_SNP [dm6]	A	C	1.809e^-4	0.92	SPLICE_SITE_REGION p53 DOWNSTREAM Gr94a INTRON p53	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_sens
3R	7313627	3R_7313627_SNP [dm3] 3R_11487905_SNP [dm6]	A	G	1.812e^-4	0.92	DOWNSTREAM CR45581 INTERGENIC
3L	15874181	3L_15874181_SNP [dm3] 3L_15881081_SNP [dm6]	G	T	1.814e^-4	0.92	INTRON pHCl
X	19496470	X_19496470_SNP [dm3] X_19602437_SNP [dm6]	T	A	1.815e^-4	0.92	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18820962	3L_18820962_SNP [dm3] 3L_18827862_SNP [dm6]	C	T	1.824e^-4	0.92	SYNONYMOUS_CODING Cat DOWNSTREAM Indy	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16283175	X_16283175_SNP [dm3] X_16389142_SNP [dm6]	T	A	1.825e^-4	0.92	UTR_3_PRIME TH1 DOWNSTREAM TH1 & 1 other
X	14777978	X_14777978_SNP [dm3] X_14883945_SNP [dm6]	A	G	1.828e^-4	0.92	INTRON Flo2
X	19604135	X_19604135_SNP [dm3] X_19710102_SNP [dm6]	G	T	1.834e^-4	0.92	INTRON meso18E
3L	11162559	3L_11162559_SNP [dm3] 3L_11169459_SNP [dm6]	A	G	1.838e^-4	0.92	UTR_5_PRIME wls UPSTREAM CG7616	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11030388	3R_11030388_DEL [dm3] 3R_15204666_DEL [dm6]	ACCATTTTA	A	1.843e^-4	0.92	INTRON Spn88Ea
2R	15285820	2R_15285820_SNP [dm3] 2R_19398315_SNP [dm6]	A	C	1.846e^-4	0.92	UTR_3_PRIME hts DOWNSTREAM hts
X	18048566	X_18048566_SNP [dm3] X_18154533_SNP [dm6]	T	A	1.853e^-4	0.92	UPSTREAM Frq1 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15823561	2L_15823561_SNP [dm3] 2L_15823561_SNP [dm6]	C	T	1.856e^-4	0.92	UPSTREAM CR44601 INTERGENIC
2L	5296237	2L_5296237_SNP [dm3] 2L_5296237_SNP [dm6]	A	C	1.868e^-4	0.92	INTRON vri
X	19602331	X_19602331_SNP [dm3] X_19708298_SNP [dm6]	G	A	1.872e^-4	0.92	SYNONYMOUS_CODING meso18E	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	2377369	3L_2377369_SNP [dm3] 3L_2377369_SNP [dm6]	T	C	1.872e^-4	0.92	NON_SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17544783	3R_17544783_INS [dm3] 3R_21719061_INS [dm6]	C	CATTTCC	1.892e^-4	0.92	CODON_INSERTION CG31176	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	15874220	3L_15874220_INS [dm3] 3L_15881120_INS [dm6]	A	AAAAAAAA	1.896e^-4	0.92	INTRON pHCl
X	19231175	X_19231175_SNP [dm3] X_19337142_SNP [dm6]	A	T	1.897e^-4	0.92	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl
3L	22598776	3L_22598776_SNP [dm3] 3L_22605676_SNP [dm6]	C	G	1.897e^-4	0.92	UPSTREAM CG6914 INTRON CG14459	TF binding site mE1_TFBS_cad
3R	13362753	3R_13362753_SNP [dm3] 3R_17537031_SNP [dm6]	C	T	1.897e^-4	0.92	UTR_3_PRIME P5cr-2 & 1 other DOWNSTREAM P5cr-2
3L	22042817	3L_22042817_SNP [dm3] 3L_22049717_SNP [dm6]	G	C	1.902e^-4	0.92	INTRON Oct-TyrR
2R	17221117	2R_17221117_SNP [dm3] 2R_21333612_SNP [dm6]	T	G	1.910e^-4	0.92	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a & 1 other	TF binding site mE1_TFBS_cad
2R	16497413	2R_16497413_SNP [dm3] 2R_20609908_SNP [dm6]	C	T	1.915e^-4	0.92	INTRON Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16788961	X_16788961_SNP [dm3] X_16894928_SNP [dm6]	T	G	1.915e^-4	0.92	INTERGENIC
3L	8271150	3L_8271150_SNP [dm3] 3L_8278050_SNP [dm6]	C	A	1.916e^-4	0.92	INTRON Dscam4	TF binding site mE1_TFBS_cad
3R	19007759	3R_19007759_SNP [dm3] 3R_23182037_SNP [dm6]	A	G	1.923e^-4	0.92	START_GAINED Irk1 UTR_5_PRIME Irk1 UPSTREAM Irk1 INTRON Irk1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10040230	2R_10040230_SNP [dm3] 2R_14152725_SNP [dm6]	A	G	1.935e^-4	0.92	UPSTREAM pea & 1 other INTRON Rcd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	24513340	3R_24513340_SNP [dm3] 3R_28687618_SNP [dm6]	C	T	1.937e^-4	0.92	INTRON CG9990
3R	22245310	3R_22245310_SNP [dm3] 3R_26419588_SNP [dm6]	G	A	1.939e^-4	0.92	INTERGENIC
3R	14441223	3R_14441223_SNP [dm3] 3R_18615501_SNP [dm6]	G	A	1.941e^-4	0.92	INTRON qin & 1 other
X	14159781	X_14159781_SNP [dm3] X_14265748_SNP [dm6]	T	A	1.945e^-4	0.92	UPSTREAM na DOWNSTREAM CG1461 INTRON CG13404	TF binding site mE1_TFBS_chinmo
2R	16898183	2R_16898183_SNP [dm3] 2R_21010678_SNP [dm6]	T	C	1.950e^-4	0.92	SYNONYMOUS_CODING grau	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4870549	3L_4870549_SNP [dm3] 3L_4870549_SNP [dm6]	A	G	1.950e^-4	0.92	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
3L	10212742	3L_10212742_SNP [dm3] 3L_10219642_SNP [dm6]	G	T	1.978e^-4	0.92	NON_SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
2R	8169112	2R_8169112_SNP [dm3] 2R_12281607_SNP [dm6]	A	T	1.984e^-4	0.92	INTRON CG42700
3R	22244634	3R_22244634_SNP [dm3] 3R_26418912_SNP [dm6]	G	T	1.986e^-4	0.92	INTERGENIC
2R	6406518	2R_6406518_SNP [dm3] 2R_10519013_SNP [dm6]	A	T	1.988e^-4	0.92	UTR_3_PRIME lola DOWNSTREAM lola INTRON lola
3R	24677390	3R_24677390_SNP [dm3] 3R_28851668_SNP [dm6]	T	C	1.992e^-4	0.92	INTRON spg
X	20486160	X_20486160_SNP [dm3] X_20615133_SNP [dm6]	T	C	1.993e^-4	0.92	INTRON RunxA	transposable element FlyBase
3R	11003411	3R_11003411_SNP [dm3] 3R_15177689_SNP [dm6]	G	T	1.994e^-4	0.92	UTR_3_PRIME Mf INTRON Gyc88E & 1 other
2R	4600712	2R_4600712_SNP [dm3] 2R_8713207_SNP [dm6]	C	A	1.994e^-4	0.92	UPSTREAM PGRP-SC1b & 1 other INTERGENIC
2L	15563093	2L_15563093_SNP [dm3] 2L_15563093_SNP [dm6]	C	T	2.001e^-4	0.92	INTRON kek3
X	22002967	X_22002967_SNP [dm3] X_22601131_SNP [dm6]	G	A	2.008e^-4	0.92	INTRON Cda4
X	16171721	X_16171721_SNP [dm3] X_16277688_SNP [dm6]	G	T	2.013e^-4	0.92	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5206076	3L_5206076_SNP [dm3] 3L_5212976_SNP [dm6]	G	A	2.016e^-4	0.92	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9168065	2R_9168065_SNP [dm3] 2R_13280560_SNP [dm6]	A	G	2.016e^-4	0.92	INTRON Dh31-R
3R	13466441	3R_13466441_SNP [dm3] 3R_17640719_SNP [dm6]	C	T	2.025e^-4	0.92	INTRON CG43175
3L	4870610	3L_4870610_SNP [dm3] 3L_4870610_SNP [dm6]	A	T	2.027e^-4	0.92	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
2L	4786287	2L_4786287_SNP [dm3] 2L_4786287_SNP [dm6]	C	T	2.028e^-4	0.92	INTRON CG15630
3R	10610050	3R_10610050_SNP [dm3] 3R_14784328_SNP [dm6]	A	T	2.029e^-4	0.92	INTRON jvl
3R	7219623	3R_7219623_SNP [dm3] 3R_11393901_SNP [dm6]	G	C	2.038e^-4	0.92	UTR_3_PRIME pros DOWNSTREAM pros
2R	16749225	2R_16749225_SNP [dm3] 2R_20861720_SNP [dm6]	T	C	2.047e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9314024	3L_9314024_SNP [dm3] 3L_9320924_SNP [dm6]	G	C	2.047e^-4	0.92	INTERGENIC
3L	15115569	3L_15115569_SNP [dm3] 3L_15122469_SNP [dm6]	T	A	2.049e^-4	0.92	DOWNSTREAM CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
X	16813348	X_16813348_SNP [dm3] X_16919315_SNP [dm6]	C	T	2.054e^-4	0.92	INTRON CG4928
3L	15874199	3L_15874199_SNP [dm3] 3L_15881099_SNP [dm6]	G	A	2.058e^-4	0.92	INTRON pHCl
3L	1616365	3L_1616365_SNP [dm3] 3L_1616365_SNP [dm6]	C	G	2.063e^-4	0.92	UPSTREAM CG12105 DOWNSTREAM CG13926 INTRON CG33791 & 1 other
3L	21710621	3L_21710621_SNP [dm3] 3L_21717521_SNP [dm6]	A	T	2.063e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	9052418	2R_9052418_DEL [dm3] 2R_13164913_DEL [dm6]	AGTGAATGGAAA...	A	2.063e^-4	0.92	UPSTREAM CG15870 INTRON GLaz
2R	17221625	2R_17221625_DEL [dm3] 2R_21334120_DEL [dm6]	TT	T	2.064e^-4	0.92	UPSTREAM snoRNA:Psi18S-1389b DOWNSTREAM snoRNA:Psi18S-1389a INTRON dom	TF binding site mE1_TFBS_cad
3R	18985870	3R_18985870_SNP [dm3] 3R_23160148_SNP [dm6]	T	A	2.067e^-4	0.92	UPSTREAM VhaAC39-2 DOWNSTREAM CG13829 INTERGENIC
3R	10186959	3R_10186959_SNP [dm3] 3R_14361237_SNP [dm6]	T	C	2.068e^-4	0.92	UTR_5_PRIME CG31320 INTRON NK7.1
2R	7281847	2R_7281847_SNP [dm3] 2R_11394342_SNP [dm6]	G	A	2.075e^-4	0.92	UPSTREAM tRNA:CR30257 INTRON sprt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14787962	2L_14787962_SNP [dm3] 2L_14787962_SNP [dm6]	G	C	2.082e^-4	0.92	INTERGENIC
3L	9701465	3L_9701465_SNP [dm3] 3L_9708365_SNP [dm6]	G	T	2.083e^-4	0.92	NON_SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11205044	2L_11205044_SNP [dm3] 2L_11205044_SNP [dm6]	T	C	2.094e^-4	0.92	DOWNSTREAM CR43859 INTERGENIC
3L	14038717	3L_14038717_SNP [dm3] 3L_14045617_SNP [dm6]	G	T	2.096e^-4	0.92	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad
2L	3450676	2L_3450676_SNP [dm3] 2L_3450676_SNP [dm6]	C	T	2.096e^-4	0.92	SYNONYMOUS_CODING Snx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24499601	3R_24499601_SNP [dm3] 3R_28673879_SNP [dm6]	T	G	2.106e^-4	0.92	INTERGENIC
3L	6910421	3L_6910421_SNP [dm3] 3L_6917321_SNP [dm6]	A	G	2.112e^-4	0.92	INTERGENIC
2L	5582397	2L_5582397_SNP [dm3] 2L_5582397_SNP [dm6]	T	G	2.120e^-4	0.92	INTERGENIC
2R	10422198	2R_10422198_SNP [dm3] 2R_14534693_SNP [dm6]	T	C	2.121e^-4	0.92	INTRON ttv
3L	22038449	3L_22038449_SNP [dm3] 3L_22045349_SNP [dm6]	A	T	2.125e^-4	0.92	INTRON Oct-TyrR
2R	805661	2R_805661_SNP [dm3] 2R_4918156_SNP [dm6]	T	G	2.126e^-4	0.92	INTRON Ir41a
3L	15874262	3L_15874262_SNP [dm3] 3L_15881162_SNP [dm6]	T	A	2.141e^-4	0.92	INTRON pHCl
2L	16405598	2L_16405598_SNP [dm3] 2L_16405598_SNP [dm6]	C	T	2.145e^-4	0.92	SYNONYMOUS_CODING CG5888	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	19849409	2R_19849409_SNP [dm3] 2R_23961886_SNP [dm6]	T	C	2.147e^-4	0.92	SYNONYMOUS_CODING CG13566 DOWNSTREAM alpha-catenin-related
3L	8402808	3L_8402808_SNP [dm3] 3L_8409708_SNP [dm6]	A	G	2.180e^-4	0.92	SYNONYMOUS_CODING Oseg1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4942391	2R_4942391_SNP [dm3] 2R_9054886_SNP [dm6]	A	T	2.182e^-4	0.92	INTRON CG13743
2R	15285810	2R_15285810_SNP [dm3] 2R_19398305_SNP [dm6]	T	A	2.188e^-4	0.92	UTR_3_PRIME hts DOWNSTREAM hts
3L	2147048	3L_2147048_SNP [dm3] 3L_2147048_SNP [dm6]	T	C	2.189e^-4	0.92	INTRON zormin
2L	945263	2L_945263_SNP [dm3] 2L_945263_SNP [dm6]	C	G	2.191e^-4	0.92	INTRON CG4341
3L	22141871	3L_22141871_SNP [dm3] 3L_22148771_SNP [dm6]	T	C	2.191e^-4	0.92	INTRON olf413	TF binding site BDTNP1_TFBS_da
2R	9052413	2R_9052413_SNP [dm3] 2R_13164908_SNP [dm6]	G	C	2.193e^-4	0.92	UPSTREAM CG15870 INTRON GLaz
2L	5582127	2L_5582127_SNP [dm3] 2L_5582127_SNP [dm6]	C	T	2.203e^-4	0.92	INTERGENIC
X	5072285	X_5072285_SNP [dm3] X_5178252_SNP [dm6]	A	G	2.205e^-4	0.92	INTRON rg & 1 other
2L	3872619	2L_3872619_SNP [dm3] 2L_3872619_SNP [dm6]	G	A	2.213e^-4	0.92	UPSTREAM CG31957 DOWNSTREAM capu INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	11448393	3L_11448393_SNP [dm3] 3L_11455293_SNP [dm6]	C	G	2.214e^-4	0.92	INTERGENIC
3L	15115568	3L_15115568_SNP [dm3] 3L_15122468_SNP [dm6]	T	C	2.226e^-4	0.92	DOWNSTREAM CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	4914341	3L_4914341_SNP [dm3] 3L_4914341_SNP [dm6]	A	G	2.227e^-4	0.92	INTRON Rh50
2L	5582324	2L_5582324_SNP [dm3] 2L_5582324_SNP [dm6]	T	C	2.230e^-4	0.92	INTERGENIC
3L	4870499	3L_4870499_SNP [dm3] 3L_4870499_SNP [dm6]	C	T	2.232e^-4	0.92	INTRON CG17150	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19610119	X_19610119_SNP [dm3] X_19716086_SNP [dm6]	T	A	2.247e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22003500	X_22003500_SNP [dm3] X_22601664_SNP [dm6]	A	T	2.250e^-4	0.92	INTRON Cda4
2L	19904671	2L_19904671_SNP [dm3] 2L_19904671_SNP [dm6]	T	A	2.250e^-4	0.92	INTRON sick
3R	24499050	3R_24499050_SNP [dm3] 3R_28673328_SNP [dm6]	G	A	2.253e^-4	0.92	INTERGENIC
3R	20703442	3R_20703442_SNP [dm3] 3R_24877720_SNP [dm6]	C	A	2.254e^-4	0.92	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20474632	2L_20474632_SNP [dm3] 2L_20474632_SNP [dm6]	C	T	2.255e^-4	0.92	INTRON CR44980
3L	9745531	3L_9745531_SNP [dm3] 3L_9752431_SNP [dm6]	A	C	2.259e^-4	0.92	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_bab1
3R	26986359	3R_26986359_SNP [dm3] 3R_31160637_SNP [dm6]	G	A	2.259e^-4	0.92	INTRON Gycbeta100B & 1 other
2R	14788995	2R_14788995_SNP [dm3] 2R_18901490_SNP [dm6]	C	T	2.263e^-4	0.92	INTRON sano
2R	17221096	2R_17221096_SNP [dm3] 2R_21333591_SNP [dm6]	A	G	2.269e^-4	0.92	SYNONYMOUS_CODING dom UPSTREAM snoRNA:Psi18S-1389a & 1 other	TF binding site mE1_TFBS_cad
2R	10883245	2R_10883245_DEL [dm3] 2R_14995740_DEL [dm6]	ACA	A	2.279e^-4	0.92	DOWNSTREAM CR43830 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	22150341	3L_22150341_SNP [dm3] 3L_22157241_SNP [dm6]	C	A	2.282e^-4	0.92	INTRON olf413	TF binding site mE1_TFBS_HSA
2L	20234776	2L_20234776_SNP [dm3] 2L_20234776_SNP [dm6]	A	C	2.284e^-4	0.92	INTERGENIC
3R	24655961	3R_24655961_SNP [dm3] 3R_28830239_SNP [dm6]	C	T	2.286e^-4	0.92	INTRON WASp
2L	9145567	2L_9145567_SNP [dm3] 2L_9145567_SNP [dm6]	T	G	2.289e^-4	0.92	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8175355	2R_8175355_SNP [dm3] 2R_12287850_SNP [dm6]	G	A	2.291e^-4	0.92	INTRON CG42700
2R	11457323	2R_11457323_DEL [dm3] 2R_15569818_DEL [dm6]	ACT	A	2.295e^-4	0.92	UTR_3_PRIME Cdk5 UPSTREAM Flo1 INTRON CG30466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24767233	3R_24767233_SNP [dm3] 3R_28941511_SNP [dm6]	A	T	2.296e^-4	0.92	INTRON CG14521
2R	14789102	2R_14789102_SNP [dm3] 2R_18901597_SNP [dm6]	A	G	2.298e^-4	0.92	INTRON sano
2R	9052431	2R_9052431_SNP [dm3] 2R_13164926_SNP [dm6]	T	C	2.301e^-4	0.92	UPSTREAM CG15870 INTRON GLaz
2R	9052437	2R_9052437_SNP [dm3] 2R_13164932_SNP [dm6]	A	G	2.301e^-4	0.92	UPSTREAM CG15870 INTRON GLaz
3L	8271145	3L_8271145_DEL [dm3] 3L_8278045_DEL [dm6]	ATTTG	A	2.311e^-4	0.92	INTRON Dscam4	TF binding site mE1_TFBS_cad
3L	15874185	3L_15874185_SNP [dm3] 3L_15881085_SNP [dm6]	T	A	2.317e^-4	0.92	INTRON pHCl
3L	11574599	3L_11574599_SNP [dm3] 3L_11581499_SNP [dm6]	T	C	2.318e^-4	0.92	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
3R	18815190	3R_18815190_SNP [dm3] 3R_22989468_SNP [dm6]	G	T	2.318e^-4	0.92	NON_SYNONYMOUS_CODING Or94b DOWNSTREAM Or94a INTRON Nha2
3R	18827336	3R_18827336_SNP [dm3] 3R_23001614_SNP [dm6]	C	T	2.318e^-4	0.92	INTRON CG34375
3L	21625722	3L_21625722_SNP [dm3] 3L_21632622_SNP [dm6]	T	G	2.327e^-4	0.92	SYNONYMOUS_CODING MED1	TF binding site mE1_TFBS_HSA
3L	8865977	3L_8865977_SNP [dm3] 3L_8872877_SNP [dm6]	G	A	2.335e^-4	0.92	INTRON dally	TF binding site BDTNP1_TFBS_twi
3R	24660529	3R_24660529_SNP [dm3] 3R_28834807_SNP [dm6]	G	A	2.336e^-4	0.92	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
X	344961	X_344961_SNP [dm3] X_450928_SNP [dm6]	C	G	2.343e^-4	0.92	INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10883057	2R_10883057_DEL [dm3] 2R_14995552_DEL [dm6]	GCTGCATGG	G	2.345e^-4	0.92	DOWNSTREAM CR43830 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18982278	3R_18982278_SNP [dm3] 3R_23156556_SNP [dm6]	C	T	2.346e^-4	0.92	INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	16239635	2L_16239635_SNP [dm3] 2L_16239635_SNP [dm6]	T	A	2.347e^-4	0.92	INTRON CG42817
3R	22239720	3R_22239720_SNP [dm3] 3R_26413998_SNP [dm6]	G	C	2.361e^-4	0.92	UPSTREAM CG5432 INTERGENIC
3L	15874227	3L_15874227_SNP [dm3] 3L_15881127_SNP [dm6]	A	G	2.363e^-4	0.92	INTRON pHCl
3L	10403988	3L_10403988_DEL [dm3] 3L_10410888_DEL [dm6]	TGTT	AAA	2.367e^-4	0.92	EXON CR44543
3R	24156376	3R_24156376_SNP [dm3] 3R_28330654_SNP [dm6]	G	T	2.369e^-4	0.92	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10706788	2R_10706788_SNP [dm3] 2R_14819283_SNP [dm6]	T	C	2.371e^-4	0.92	SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	20739422	3R_20739422_SNP [dm3] 3R_24913700_SNP [dm6]	T	A	2.374e^-4	0.92	DOWNSTREAM CR44267 INTRON PIG-S
3L	1235258	3L_1235258_DEL [dm3] 3L_1235258_DEL [dm6]	TAAATTGCTTAAAATA...	T	2.376e^-4	0.92	UTR_3_PRIME CG33966 UPSTREAM CR45747 & 1 other
3L	2487775	3L_2487775_SNP [dm3] 3L_2487775_SNP [dm6]	G	A	2.376e^-4	0.92	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10670301	3R_10670301_MNP [dm3] 3R_14844579_MNP [dm6]	TAG	AGA	2.379e^-4	0.92	UPSTREAM CG3610 INTRON btsz
3L	5206119	3L_5206119_SNP [dm3] 3L_5213019_SNP [dm6]	T	C	2.383e^-4	0.92	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7313752	3R_7313752_SNP [dm3] 3R_11488030_SNP [dm6]	A	G	2.393e^-4	0.922	DOWNSTREAM CR45581 INTERGENIC
3R	22125471	3R_22125471_SNP [dm3] 3R_26299749_SNP [dm6]	A	T	2.400e^-4	0.922	INTERGENIC
2L	15610089	2L_15610089_SNP [dm3] 2L_15610089_SNP [dm6]	T	C	2.413e^-4	0.922	UPSTREAM CR44865 DOWNSTREAM CG15255 INTERGENIC
2L	3783302	2L_3783302_DEL [dm3] 2L_3783302_DEL [dm6]	ACTAGAAAACAATCCATTAA...	A	2.414e^-4	0.922	UTR_3_PRIME bowl
X	2778535	X_2778535_SNP [dm3] X_2884502_SNP [dm6]	T	G	2.419e^-4	0.922	UPSTREAM CG14418 DOWNSTREAM CG14419 INTRON kirre
2R	14789330	2R_14789330_SNP [dm3] 2R_18901825_SNP [dm6]	T	A	2.425e^-4	0.922	INTRON sano
X	14777972	X_14777972_SNP [dm3] X_14883939_SNP [dm6]	A	C	2.431e^-4	0.922	INTRON Flo2
2R	15506283	2R_15506283_SNP [dm3] 2R_19618778_SNP [dm6]	T	A	2.436e^-4	0.922	INTRON sm	TF binding site BDTNP1_TFBS_dl
2R	14788992	2R_14788992_SNP [dm3] 2R_18901487_SNP [dm6]	G	A	2.444e^-4	0.922	INTRON sano
X	2810431	X_2810431_SNP [dm3] X_2916398_SNP [dm6]	G	A	2.473e^-4	0.922	INTRON kirre
2R	8894729	2R_8894729_SNP [dm3] 2R_13007224_SNP [dm6]	C	G	2.475e^-4	0.922	UTR_3_PRIME Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5877857	2L_5877857_SNP [dm3] 2L_5877857_SNP [dm6]	T	C	2.485e^-4	0.922	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12397358	2R_12397358_SNP [dm3] 2R_16509853_SNP [dm6]	A	C	2.488e^-4	0.922	INTRON Sema-2a
3R	24695546	3R_24695546_SNP [dm3] 3R_28869824_SNP [dm6]	G	A	2.492e^-4	0.922	UTR_3_PRIME spg DOWNSTREAM CG33203 & 1 other
3R	1797319	3R_1797319_SNP [dm3] 3R_5971597_SNP [dm6]	T	G	2.499e^-4	0.922	DOWNSTREAM CR44926 & 1 other INTERGENIC
3R	10583999	3R_10583999_SNP [dm3] 3R_14758277_SNP [dm6]	G	C	2.500e^-4	0.922	INTRON jvl
3R	22234000	3R_22234000_SNP [dm3] 3R_26408278_SNP [dm6]	G	T	2.504e^-4	0.922	INTERGENIC
2R	8734907	2R_8734907_SNP [dm3] 2R_12847402_SNP [dm6]	T	C	2.512e^-4	0.922	UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486 INTRON antr
3L	12644003	3L_12644003_SNP [dm3] 3L_12650903_SNP [dm6]	A	T	2.518e^-4	0.922	INTRON CR43431	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3R	24156468	3R_24156468_SNP [dm3] 3R_28330746_SNP [dm6]	T	G	2.539e^-4	0.922	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7313799	2R_7313799_SNP [dm3] 2R_11426294_SNP [dm6]	G	A	2.542e^-4	0.922	INTRON Drip
3R	18896359	3R_18896359_SNP [dm3] 3R_23070637_SNP [dm6]	C	G	2.548e^-4	0.922	UTR_3_PRIME CG13830
2L	14831787	2L_14831787_SNP [dm3] 2L_14831787_SNP [dm6]	C	A	2.549e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	24677384	3R_24677384_SNP [dm3] 3R_28851662_SNP [dm6]	C	T	2.550e^-4	0.922	INTRON spg
2L	14787957	2L_14787957_DEL [dm3] 2L_14787957_DEL [dm6]	TT	T	2.564e^-4	0.922	INTERGENIC
3R	9976651	3R_9976651_DEL [dm3] 3R_14150929_DEL [dm6]	AA	A	2.579e^-4	0.922	INTRON CG14355
3L	18225598	3L_18225598_SNP [dm3] 3L_18232498_SNP [dm6]	T	A	2.585e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12854925	X_12854925_SNP [dm3] X_12960892_SNP [dm6]	G	A	2.588e^-4	0.922	DOWNSTREAM CG32642 INTERGENIC
2L	2514666	2L_2514666_SNP [dm3] 2L_2514666_SNP [dm6]	C	T	2.597e^-4	0.922	INTERGENIC
X	16172257	X_16172257_SNP [dm3] X_16278224_SNP [dm6]	A	T	2.610e^-4	0.922	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	8356936	3L_8356936_DEL [dm3] 3L_8363836_DEL [dm6]	CTG	C	2.611e^-4	0.922	INTERGENIC
3L	8356942	3L_8356942_SNP [dm3] 3L_8363842_SNP [dm6]	A	G	2.611e^-4	0.922	INTERGENIC
2L	8652551	2L_8652551_SNP [dm3] 2L_8652551_SNP [dm6]	A	T	2.617e^-4	0.922	INTRON Sema-1a
3L	7254056	3L_7254056_SNP [dm3] 3L_7260956_SNP [dm6]	T	C	2.617e^-4	0.922	INTRON CG14830
X	1007531	X_1007531_SNP [dm3] X_1113498_SNP [dm6]	C	T	2.630e^-4	0.922	INTRON CG3655
X	1007605	X_1007605_SNP [dm3] X_1113572_SNP [dm6]	A	G	2.631e^-4	0.922	INTRON CG3655
2L	5815238	2L_5815238_SNP [dm3] 2L_5815238_SNP [dm6]	T	C	2.640e^-4	0.922	INTERGENIC
X	12854883	X_12854883_SNP [dm3] X_12960850_SNP [dm6]	T	C	2.642e^-4	0.922	DOWNSTREAM CG32642 INTERGENIC
2L	3284430	2L_3284430_SNP [dm3] 2L_3284430_SNP [dm6]	T	C	2.649e^-4	0.922	INTERGENIC
2R	7377726	2R_7377726_DEL [dm3] 2R_11490221_DEL [dm6]	TT	T	2.655e^-4	0.922	INTRON inv
3R	24541259	3R_24541259_SNP [dm3] 3R_28715537_SNP [dm6]	T	G	2.665e^-4	0.922	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	4914123	3L_4914123_SNP [dm3] 3L_4914123_SNP [dm6]	T	G	2.679e^-4	0.922	INTRON Rh50	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10321655	3L_10321655_SNP [dm3] 3L_10328555_SNP [dm6]	T	C	2.682e^-4	0.922	INTERGENIC
3L	8724386	3L_8724386_SNP [dm3] 3L_8731286_SNP [dm6]	T	A	2.685e^-4	0.922	UPSTREAM Cp16 DOWNSTREAM Cp19 INTERGENIC
3L	9660490	3L_9660490_INS [dm3] 3L_9667390_INS [dm6]	C	ACTG	2.689e^-4	0.922	INTRON fry
2L	5219557	2L_5219557_SNP [dm3] 2L_5219557_SNP [dm6]	A	T	2.690e^-4	0.922	UTR_3_PRIME tkv DOWNSTREAM TpnC25D
3R	24541260	3R_24541260_SNP [dm3] 3R_28715538_SNP [dm6]	T	A	2.697e^-4	0.922	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	13719141	2R_13719141_SNP [dm3] 2R_17831636_SNP [dm6]	A	G	2.697e^-4	0.922	INTRON grh	TF binding site mE1_TFBS_cad
X	12853802	X_12853802_SNP [dm3] X_12959769_SNP [dm6]	G	A	2.700e^-4	0.922	SYNONYMOUS_CODING CG32642
3R	7315242	3R_7315242_DEL [dm3] 3R_11489520_DEL [dm6]	CCGGCATTTGCC...	C	2.701e^-4	0.922	INTERGENIC
2R	7377580	2R_7377580_SNP [dm3] 2R_11490075_SNP [dm6]	T	G	2.707e^-4	0.922	INTRON inv
3L	2389888	3L_2389888_SNP [dm3] 3L_2389888_SNP [dm6]	A	G	2.712e^-4	0.922	DOWNSTREAM CG42787 INTRON CG45186 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12336932	X_12336932_SNP [dm3] X_12442899_SNP [dm6]	T	A	2.714e^-4	0.922	INTRON Pkcdelta
2L	16664867	2L_16664867_SNP [dm3] 2L_16664867_SNP [dm6]	C	T	2.716e^-4	0.922	UTR_3_PRIME Trpgamma	TF binding site mE1_TFBS_cad
3R	24655900	3R_24655900_SNP [dm3] 3R_28830178_SNP [dm6]	A	G	2.719e^-4	0.922	INTRON WASp
3R	13892359	3R_13892359_SNP [dm3] 3R_18066637_SNP [dm6]	C	G	2.720e^-4	0.922	INTERGENIC
2L	7565791	2L_7565791_SNP [dm3] 2L_7565791_SNP [dm6]	T	C	2.723e^-4	0.922	INTRON RapGAP1
3R	23144582	3R_23144582_SNP [dm3] 3R_27318860_SNP [dm6]	C	T	2.725e^-4	0.922	INTRON CG3339 EXON CR44287	TF binding site mE1_TFBS_chinmo
X	12854919	X_12854919_SNP [dm3] X_12960886_SNP [dm6]	T	A	2.736e^-4	0.922	DOWNSTREAM CG32642 INTERGENIC
2L	20266026	2L_20266026_SNP [dm3] 2L_20266026_SNP [dm6]	G	C	2.747e^-4	0.922	INTERGENIC
3R	16581216	3R_16581216_SNP [dm3] 3R_20755494_SNP [dm6]	G	A	2.753e^-4	0.922	UTR_3_PRIME CG42322	TF binding site mE1_TFBS_inv
2R	14732816	2R_14732816_SNP [dm3] 2R_18845311_SNP [dm6]	T	C	2.765e^-4	0.922	SYNONYMOUS_CODING CG15099
2R	7377748	2R_7377748_SNP [dm3] 2R_11490243_SNP [dm6]	C	T	2.767e^-4	0.922	INTRON inv
2L	7079475	2L_7079475_SNP [dm3] 2L_7079475_SNP [dm6]	A	G	2.780e^-4	0.922	UPSTREAM CR44611 INTRON Pvf2
X	14876022	X_14876022_SNP [dm3] X_14981989_SNP [dm6]	A	G	2.784e^-4	0.922	INTRON eag
2R	9052359	2R_9052359_MNP [dm3] 2R_13164854_MNP [dm6]	AAAA	CCGT	2.786e^-4	0.922	UPSTREAM CG15870 INTRON GLaz
3L	19362167	3L_19362167_SNP [dm3] 3L_19369067_SNP [dm6]	G	A	2.793e^-4	0.922	INTRON CG32206
2R	15563748	2R_15563748_SNP [dm3] 2R_19676243_SNP [dm6]	G	A	2.801e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15366398	2R_15366398_SNP [dm3] 2R_19478893_SNP [dm6]	A	T	2.803e^-4	0.922	INTRON par-1
X	21991040	X_21991040_SNP [dm3] X_22589204_SNP [dm6]	C	T	2.820e^-4	0.922	INTRON Cda4	TF binding site BDTNP1_TFBS_sna
3L	2603556	3L_2603556_SNP [dm3] 3L_2603556_SNP [dm6]	G	A	2.821e^-4	0.922	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	24767169	3R_24767169_SNP [dm3] 3R_28941447_SNP [dm6]	C	T	2.829e^-4	0.922	INTRON CG14521
3L	8356935	3L_8356935_SNP [dm3] 3L_8363835_SNP [dm6]	C	A	2.830e^-4	0.922	INTERGENIC
3L	4308486	3L_4308486_SNP [dm3] 3L_4308486_SNP [dm6]	A	C	2.831e^-4	0.922	UPSTREAM dyl INTERGENIC
3R	3100315	3R_3100315_INS [dm3] 3R_7274593_INS [dm6]	G	GGCGCTGTGTCTACGTTTG...	2.835e^-4	0.922	INTRON rn
3L	22140940	3L_22140940_SNP [dm3] 3L_22147840_SNP [dm6]	T	A	2.836e^-4	0.922	INTRON olf413	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
X	5063018	X_5063018_DEL [dm3] X_5168985_DEL [dm6]	GCGTGTG	G	2.844e^-4	0.922	INTRON rg & 1 other
3L	12249144	3L_12249144_SNP [dm3] 3L_12256044_SNP [dm6]	A	G	2.845e^-4	0.922	INTRON app
X	4265006	X_4265006_SNP [dm3] X_4370973_SNP [dm6]	T	A	2.847e^-4	0.922	UTR_3_PRIME CG3626 INTRON CR43614
2L	7331812	2L_7331812_DEL [dm3] 2L_7331812_DEL [dm6]	AA	T	2.850e^-4	0.922	INTERGENIC
2L	4016289	2L_4016289_SNP [dm3] 2L_4016289_SNP [dm6]	A	T	2.850e^-4	0.922	INTERGENIC
X	10667120	X_10667120_SNP [dm3] X_10773087_SNP [dm6]	G	A	2.853e^-4	0.922	NON_SYNONYMOUS_CODING CG15211 DOWNSTREAM BTBD9	TF binding site mE1_TFBS_HSA
3R	7812204	3R_7812204_SNP [dm3] 3R_11986482_SNP [dm6]	A	G	2.858e^-4	0.922	SYNONYMOUS_CODING mfas	TF binding site mE1_TFBS_cad
2R	19862211	2R_19862211_SNP [dm3] 2R_23974688_SNP [dm6]	A	T	2.866e^-4	0.922	SYNONYMOUS_CODING mr DOWNSTREAM Gadd34
2R	12810415	2R_12810415_SNP [dm3] 2R_16922910_SNP [dm6]	T	C	2.870e^-4	0.922	INTERGENIC
X	5062992	X_5062992_SNP [dm3] X_5168959_SNP [dm6]	T	C	2.873e^-4	0.922	INTRON rg & 1 other
3R	24156358	3R_24156358_SNP [dm3] 3R_28330636_SNP [dm6]	C	T	2.876e^-4	0.922	INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17544012	3R_17544012_SNP [dm3] 3R_21718290_SNP [dm6]	T	A	2.876e^-4	0.922	INTRON CG31176	TF binding site BDTNP1_TFBS_twi
X	15640536	X_15640536_SNP [dm3] X_15746503_SNP [dm6]	T	A	2.879e^-4	0.922	UPSTREAM Tcp-1zeta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	7159860	2R_7159860_SNP [dm3] 2R_11272355_SNP [dm6]	T	C	2.888e^-4	0.922	INTRON Cpr47Ef	TF binding site mE1_TFBS_cad
3R	9976659	3R_9976659_SNP [dm3] 3R_14150937_SNP [dm6]	T	A	2.900e^-4	0.922	INTRON CG14355
2R	12438343	2R_12438343_SNP [dm3] 2R_16550838_SNP [dm6]	A	T	2.906e^-4	0.922	INTERGENIC
3R	25294336	3R_25294336_SNP [dm3] 3R_29468614_SNP [dm6]	G	A	2.920e^-4	0.922	INTRON Ptp99A
3L	9656571	3L_9656571_SNP [dm3] 3L_9663471_SNP [dm6]	G	C	2.924e^-4	0.922	SYNONYMOUS_CODING fry	TF binding site mE1_TFBS_cad
3R	23144640	3R_23144640_SNP [dm3] 3R_27318918_SNP [dm6]	T	G	2.925e^-4	0.922	NON_SYNONYMOUS_CODING CG3339 EXON CR44287	TF binding site mE1_TFBS_chinmo
2R	12023947	2R_12023947_SNP [dm3] 2R_16136442_SNP [dm6]	A	G	2.931e^-4	0.922	SYNONYMOUS_CODING spin UTR_3_PRIME spin
3R	16001930	3R_16001930_SNP [dm3] 3R_20176208_SNP [dm6]	T	C	2.939e^-4	0.922	INTERGENIC
3R	26099279	3R_26099279_SNP [dm3] 3R_30273557_SNP [dm6]	A	G	2.945e^-4	0.922	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	5762394	3R_5762394_SNP [dm3] 3R_9936672_SNP [dm6]	C	G	2.946e^-4	0.922	INTRON Glut4EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14072720	2L_14072720_SNP [dm3] 2L_14072720_SNP [dm6]	C	A	2.948e^-4	0.922	INTRON nAChRalpha5
2L	4173385	2L_4173385_SNP [dm3] 2L_4173385_SNP [dm6]	G	A	2.950e^-4	0.922	INTERGENIC
2R	9052382	2R_9052382_SNP [dm3] 2R_13164877_SNP [dm6]	T	A	2.954e^-4	0.922	UPSTREAM CG15870 INTRON GLaz
3L	11164829	3L_11164829_SNP [dm3] 3L_11171729_SNP [dm6]	C	G	2.957e^-4	0.922	INTRON CG7616	TF binding site mE1_TFBS_cad
3L	19225215	3L_19225215_SNP [dm3] 3L_19232115_SNP [dm6]	G	A	2.960e^-4	0.922	INTRON fz2
3L	5206071	3L_5206071_SNP [dm3] 3L_5212971_SNP [dm6]	C	G	2.973e^-4	0.922	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4916164	2R_4916164_SNP [dm3] 2R_9028659_SNP [dm6]	C	A	2.977e^-4	0.922	INTRON CG8170
3R	10610053	3R_10610053_SNP [dm3] 3R_14784331_SNP [dm6]	A	G	2.979e^-4	0.922	INTRON jvl
X	4863094	X_4863094_SNP [dm3] X_4969061_SNP [dm6]	T	C	2.983e^-4	0.922	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19856488	X_19856488_SNP [dm3] X_19962455_SNP [dm6]	T	C	2.984e^-4	0.922	UPSTREAM Nep3 INTRON Nep3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	1491101	2L_1491101_SNP [dm3] 2L_1491101_SNP [dm6]	C	T	2.992e^-4	0.922	INTERGENIC
2R	14087422	2R_14087422_SNP [dm3] 2R_18199917_SNP [dm6]	A	C	3.010e^-4	0.922	INTERGENIC
2L	4309396	2L_4309396_SNP [dm3] 2L_4309396_SNP [dm6]	T	A	3.012e^-4	0.922	INTRON tutl
X	12336882	X_12336882_SNP [dm3] X_12442849_SNP [dm6]	T	A	3.016e^-4	0.922	INTRON Pkcdelta
2R	16749214	2R_16749214_SNP [dm3] 2R_20861709_SNP [dm6]	T	C	3.025e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15754461	2R_15754461_INS [dm3] 2R_19866956_INS [dm6]	T	TTATAAAAT	3.031e^-4	0.922	INTRON Obp56i
X	9841373	X_9841373_SNP [dm3] X_9947340_SNP [dm6]	G	A	3.034e^-4	0.922	INTERGENIC
3R	7332557	3R_7332557_SNP [dm3] 3R_11506835_SNP [dm6]	C	A	3.038e^-4	0.922	DOWNSTREAM dpr5 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2256171	3L_2256171_SNP [dm3] 3L_2256171_SNP [dm6]	A	G	3.053e^-4	0.922	UPSTREAM CG1275 INTRON CG1275	TF binding site mE1_TFBS_chinmo
2L	5296186	2L_5296186_SNP [dm3] 2L_5296186_SNP [dm6]	C	T	3.056e^-4	0.922	INTRON vri
X	18412863	X_18412863_SNP [dm3] X_18518830_SNP [dm6]	G	A	3.064e^-4	0.922	SYNONYMOUS_CODING Aats-his INTRON Bx	TF binding site mE1_TFBS_chinmo
X	2513124	X_2513124_SNP [dm3] X_2619091_SNP [dm6]	T	C	3.075e^-4	0.922	UPSTREAM Seipin INTRON Tsp3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	17354920	3R_17354920_SNP [dm3] 3R_21529198_SNP [dm6]	G	A	3.077e^-4	0.922	DOWNSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2R	17141698	2R_17141698_SNP [dm3] 2R_21254193_SNP [dm6]	T	G	3.082e^-4	0.922	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_inv
2R	3567642	2R_3567642_SNP [dm3] 2R_7680137_SNP [dm6]	G	A	3.083e^-4	0.922	INTRON CG1399	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22143549	3L_22143549_SNP [dm3] 3L_22150449_SNP [dm6]	T	A	3.089e^-4	0.922	INTRON olf413
3R	7266518	3R_7266518_DEL [dm3] 3R_11440796_DEL [dm6]	TC	T	3.091e^-4	0.922	INTRON CG17230 & 1 other
3R	9976660	3R_9976660_SNP [dm3] 3R_14150938_SNP [dm6]	A	G	3.092e^-4	0.922	INTRON CG14355
2L	5582354	2L_5582354_SNP [dm3] 2L_5582354_SNP [dm6]	C	T	3.098e^-4	0.922	INTERGENIC
2L	9968804	2L_9968804_INS [dm3] 2L_9968804_INS [dm6]	A	AA	3.103e^-4	0.922	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12317611	3L_12317611_SNP [dm3] 3L_12324511_SNP [dm6]	C	T	3.112e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15654879	3R_15654879_SNP [dm3] 3R_19829157_SNP [dm6]	T	C	3.116e^-4	0.922	INTRON bnl
X	4939895	X_4939895_SNP [dm3] X_5045862_SNP [dm6]	A	T	3.117e^-4	0.922	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	5290355	2L_5290355_SNP [dm3] 2L_5290355_SNP [dm6]	T	A	3.121e^-4	0.922	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16248110	2L_16248110_DEL [dm3] 2L_16248110_DEL [dm6]	TAT	T	3.123e^-4	0.922	INTRON PRL-1
2R	7281331	2R_7281331_SNP [dm3] 2R_11393826_SNP [dm6]	C	T	3.134e^-4	0.922	UPSTREAM tRNA:CR30257 INTRON sprt
2R	12456810	2R_12456810_SNP [dm3] 2R_16569305_SNP [dm6]	A	G	3.140e^-4	0.922	SYNONYMOUS_CODING CG4945 DOWNSTREAM RpS15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8734944	2R_8734944_SNP [dm3] 2R_12847439_SNP [dm6]	T	A	3.143e^-4	0.922	SYNONYMOUS_CODING antr UPSTREAM CG17575 & 1 other DOWNSTREAM CG30486
2R	14706458	2R_14706458_SNP [dm3] 2R_18818953_SNP [dm6]	T	A	3.146e^-4	0.922	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22233747	3R_22233747_SNP [dm3] 3R_26408025_SNP [dm6]	C	G	3.151e^-4	0.922	INTERGENIC
3R	6885416	3R_6885416_SNP [dm3] 3R_11059694_SNP [dm6]	A	C	3.152e^-4	0.922	INTERGENIC
2R	17141692	2R_17141692_INS [dm3] 2R_21254187_INS [dm6]	T	TTA	3.159e^-4	0.922	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_inv
2R	17141695	2R_17141695_INS [dm3] 2R_21254190_INS [dm6]	T	TTTTATAATTTTCATGTCAC...	3.159e^-4	0.922	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_inv
3R	25939735	3R_25939735_SNP [dm3] 3R_30114013_SNP [dm6]	C	T	3.161e^-4	0.922	INTRON sima
3R	10003975	3R_10003975_SNP [dm3] 3R_14178253_SNP [dm6]	A	G	3.171e^-4	0.922	SYNONYMOUS_CODING Dop1R1
X	8366041	X_8366041_INS [dm3] X_8472008_INS [dm6]	T	TC	3.173e^-4	0.922	INTRON CG33223 & 1 other
2R	8313969	2R_8313969_SNP [dm3] 2R_12426464_SNP [dm6]	T	C	3.174e^-4	0.922	SPLICE_SITE_REGION CG8525 SYNONYMOUS_CODING CG8525 DOWNSTREAM CG13154	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4061867	2L_4061867_SNP [dm3] 2L_4061867_SNP [dm6]	T	C	3.175e^-4	0.922	INTRON ed
2L	2536911	2L_2536911_SNP [dm3] 2L_2536911_SNP [dm6]	A	G	3.183e^-4	0.922	INTERGENIC
3R	21534506	3R_21534506_SNP [dm3] 3R_25708784_SNP [dm6]	A	G	3.185e^-4	0.922	INTRON LpR2
2R	15393560	2R_15393560_SNP [dm3] 2R_19506055_SNP [dm6]	C	A	3.195e^-4	0.922	DOWNSTREAM tRNA:H:56E & 1 other INTERGENIC
3R	24580181	3R_24580181_SNP [dm3] 3R_28754459_SNP [dm6]	A	C	3.205e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24499067	3R_24499067_SNP [dm3] 3R_28673345_SNP [dm6]	T	C	3.209e^-4	0.922	INTERGENIC
2R	12998195	2R_12998195_SNP [dm3] 2R_17110690_SNP [dm6]	G	C	3.210e^-4	0.922	INTRON CG15611	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5582344	2L_5582344_SNP [dm3] 2L_5582344_SNP [dm6]	A	C	3.232e^-4	0.922	INTERGENIC
2L	20229431	2L_20229431_SNP [dm3] 2L_20229431_SNP [dm6]	G	T	3.235e^-4	0.922	INTERGENIC
2L	19947670	2L_19947670_SNP [dm3] 2L_19947670_SNP [dm6]	T	A	3.236e^-4	0.922	INTRON sick
3R	4713655	3R_4713655_SNP [dm3] 3R_8887933_SNP [dm6]	A	C	3.243e^-4	0.922	INTRON pyd
X	1007532	X_1007532_SNP [dm3] X_1113499_SNP [dm6]	C	T	3.243e^-4	0.922	INTRON CG3655
3R	20703453	3R_20703453_SNP [dm3] 3R_24877731_SNP [dm6]	A	C	3.248e^-4	0.922	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24662342	3R_24662342_SNP [dm3] 3R_28836620_SNP [dm6]	G	A	3.251e^-4	0.922	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17544300	3R_17544300_SNP [dm3] 3R_21718578_SNP [dm6]	G	A	3.263e^-4	0.922	SYNONYMOUS_CODING CG31176	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	15413629	2L_15413629_SNP [dm3] 2L_15413629_SNP [dm6]	T	A	3.268e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10482204	2R_10482204_SNP [dm3] 2R_14594699_SNP [dm6]	T	C	3.269e^-4	0.922	SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12864764	X_12864764_SNP [dm3] X_12970731_SNP [dm6]	A	G	3.279e^-4	0.922	NON_SYNONYMOUS_CODING CG15721 DOWNSTREAM Mur11Da EXON CR43636
3R	18881385	3R_18881385_SNP [dm3] 3R_23055663_SNP [dm6]	G	A	3.280e^-4	0.922	SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17141707	2R_17141707_SNP [dm3] 2R_21254202_SNP [dm6]	T	G	3.285e^-4	0.922	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_inv
2R	13179063	2R_13179063_SNP [dm3] 2R_17291558_SNP [dm6]	G	T	3.287e^-4	0.922	INTRON mbl
X	17696973	X_17696973_SNP [dm3] X_17802940_SNP [dm6]	G	C	3.288e^-4	0.922	INTRON OdsH	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	11662644	X_11662644_SNP [dm3] X_11768611_SNP [dm6]	A	C	3.290e^-4	0.922	UTR_3_PRIME m
X	2616553	X_2616553_SNP [dm3] X_2722520_SNP [dm6]	G	A	3.304e^-4	0.922	NON_SYNONYMOUS_CODING fs_1_Yb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	16156148	2R_16156148_SNP [dm3] 2R_20268643_SNP [dm6]	T	A	3.306e^-4	0.922	SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15130130	2R_15130130_SNP [dm3] 2R_19242625_SNP [dm6]	A	T	3.313e^-4	0.922	INTRON cora
2L	19900891	2L_19900891_SNP [dm3] 2L_19900891_SNP [dm6]	C	T	3.317e^-4	0.922	INTRON sick
2R	10773660	2R_10773660_SNP [dm3] 2R_14886155_SNP [dm6]	A	G	3.320e^-4	0.922	SYNONYMOUS_CODING Cyp6a21	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12854909	X_12854909_INS [dm3] X_12960876_INS [dm6]	T	TTATTTTTT	3.325e^-4	0.922	DOWNSTREAM CG32642 INTERGENIC
3L	10619799	3L_10619799_SNP [dm3] 3L_10626699_SNP [dm6]	T	C	3.328e^-4	0.922	DOWNSTREAM CG14151 INTRON CG34238
2R	5071774	2R_5071774_SNP [dm3] 2R_9184269_SNP [dm6]	C	T	3.329e^-4	0.922	INTRON ltd EXON CR44284	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	19218824	2R_19218824_SNP [dm3] 2R_23331301_SNP [dm6]	G	T	3.341e^-4	0.922	INTERGENIC
2L	21878265	2L_21878265_DEL [dm3] 2L_21878265_DEL [dm6]	AA	A	3.353e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	18805329	3R_18805329_SNP [dm3] 3R_22979607_SNP [dm6]	G	T	3.359e^-4	0.922	INTERGENIC
3L	10408053	3L_10408053_SNP [dm3] 3L_10414953_SNP [dm6]	T	G	3.360e^-4	0.922	DOWNSTREAM CG12362 INTERGENIC
X	15640532	X_15640532_SNP [dm3] X_15746499_SNP [dm6]	T	A	3.361e^-4	0.922	UPSTREAM Tcp-1zeta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	2603619	3L_2603619_SNP [dm3] 3L_2603619_SNP [dm6]	C	T	3.371e^-4	0.922	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	21634930	3L_21634930_SNP [dm3] 3L_21641830_SNP [dm6]	A	T	3.377e^-4	0.922	INTRON Atox1
3R	24234790	3R_24234790_SNP [dm3] 3R_28409068_SNP [dm6]	G	A	3.379e^-4	0.922	INTERGENIC
2R	14087276	2R_14087276_INS [dm3] 2R_18199771_INS [dm6]	T	TCGTTATAT	3.384e^-4	0.922	INTERGENIC
2R	19715562	2R_19715562_SNP [dm3] 2R_23828039_SNP [dm6]	A	T	3.391e^-4	0.922	INTRON CG5549
2R	7283907	2R_7283907_SNP [dm3] 2R_11396402_SNP [dm6]	A	G	3.393e^-4	0.922	INTRON sprt	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_sens mE1_TFBS_Trl
2L	5110345	2L_5110345_SNP [dm3] 2L_5110345_SNP [dm6]	C	T	3.399e^-4	0.922	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13378286	3R_13378286_SNP [dm3] 3R_17552564_SNP [dm6]	A	C	3.404e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26692034	3R_26692034_SNP [dm3] 3R_30866312_SNP [dm6]	T	A	3.404e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	25293943	3R_25293943_SNP [dm3] 3R_29468221_SNP [dm6]	G	A	3.406e^-4	0.922	INTRON Ptp99A
2L	3674228	2L_3674228_SNP [dm3] 2L_3674228_SNP [dm6]	C	A	3.409e^-4	0.922	INTRON CG34340
3R	13615846	3R_13615846_SNP [dm3] 3R_17790124_SNP [dm6]	A	G	3.430e^-4	0.922	INTRON CG43102
2L	11174871	2L_11174871_SNP [dm3] 2L_11174871_SNP [dm6]	G	C	3.430e^-4	0.922	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7285460	2R_7285460_SNP [dm3] 2R_11397955_SNP [dm6]	G	A	3.446e^-4	0.922	UPSTREAM sprt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	21593923	2L_21593923_SNP [dm3] 2L_21593923_SNP [dm6]	C	A	3.450e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2L	7565746	2L_7565746_SNP [dm3] 2L_7565746_SNP [dm6]	C	T	3.456e^-4	0.922	INTRON RapGAP1
3R	9976628	3R_9976628_SNP [dm3] 3R_14150906_SNP [dm6]	A	G	3.466e^-4	0.922	INTRON CG14355	TF binding site mE1_TFBS_cad
X	10469431	X_10469431_SNP [dm3] X_10575398_SNP [dm6]	C	A	3.471e^-4	0.922	NON_SYNONYMOUS_CODING spri
2R	7281419	2R_7281419_SNP [dm3] 2R_11393914_SNP [dm6]	G	T	3.473e^-4	0.922	UPSTREAM tRNA:CR30257 INTRON sprt
3R	20703516	3R_20703516_SNP [dm3] 3R_24877794_SNP [dm6]	A	T	3.474e^-4	0.922	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3659853	2L_3659853_SNP [dm3] 2L_3659853_SNP [dm6]	T	C	3.482e^-4	0.922	INTERGENIC
3L	3565446	3L_3565446_DEL [dm3] 3L_3565446_DEL [dm6]	CGC	C	3.490e^-4	0.922	INTRON Eip63E
X	7487118	X_7487118_SNP [dm3] X_7593085_SNP [dm6]	A	T	3.493e^-4	0.922	INTERGENIC	regulatory region REDfly_CRMs
2L	8820028	2L_8820028_SNP [dm3] 2L_8820028_SNP [dm6]	C	T	3.495e^-4	0.922	INTERGENIC
3R	5156249	3R_5156249_SNP [dm3] 3R_9330527_SNP [dm6]	A	G	3.497e^-4	0.922	UPSTREAM CG12951 DOWNSTREAM CG16749 INTERGENIC
2L	20590589	2L_20590589_DEL [dm3] 2L_20590589_DEL [dm6]	TT	T	3.515e^-4	0.922	INTRON CR44909
2R	12995127	2R_12995127_SNP [dm3] 2R_17107622_SNP [dm6]	G	A	3.520e^-4	0.922	DOWNSTREAM CG30456 INTERGENIC
2R	14788845	2R_14788845_SNP [dm3] 2R_18901340_SNP [dm6]	C	T	3.521e^-4	0.922	INTRON sano
3L	2327546	3L_2327546_SNP [dm3] 3L_2327546_SNP [dm6]	A	T	3.525e^-4	0.922	INTRON MsR1
X	4320673	X_4320673_SNP [dm3] X_4426640_SNP [dm6]	A	T	3.526e^-4	0.922	UPSTREAM bi INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8271144	3L_8271144_SNP [dm3] 3L_8278044_SNP [dm6]	T	C	3.534e^-4	0.922	INTRON Dscam4	TF binding site mE1_TFBS_cad
3R	18965968	3R_18965968_DEL [dm3] 3R_23140246_DEL [dm6]	AG	A	3.534e^-4	0.922	INTRON hh	TF binding site mE1_TFBS_cad
X	19720028	X_19720028_DEL [dm3] X_19825995_DEL [dm6]	CTTCT	C	3.539e^-4	0.922	INTERGENIC
3L	22042596	3L_22042596_SNP [dm3] 3L_22049496_SNP [dm6]	A	C	3.541e^-4	0.922	INTRON Oct-TyrR
3L	10245807	3L_10245807_SNP [dm3] 3L_10252707_SNP [dm6]	C	A	3.545e^-4	0.922	INTERGENIC
2R	14789298	2R_14789298_SNP [dm3] 2R_18901793_SNP [dm6]	G	A	3.549e^-4	0.922	INTRON sano
2L	10692368	2L_10692368_DEL [dm3] 2L_10692368_DEL [dm6]	GA	G	3.553e^-4	0.922	DOWNSTREAM CG17108 INTERGENIC
3R	15557836	3R_15557836_SNP [dm3] 3R_19732114_SNP [dm6]	G	A	3.553e^-4	0.922	INTRON GluClalpha
3R	18865242	3R_18865242_SNP [dm3] 3R_23039520_SNP [dm6]	T	A	3.559e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18983908	3R_18983908_SNP [dm3] 3R_23158186_SNP [dm6]	A	G	3.564e^-4	0.922	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	19893633	2L_19893633_SNP [dm3] 2L_19893633_SNP [dm6]	C	T	3.574e^-4	0.922	INTRON sick
X	5635830	X_5635830_SNP [dm3] X_5741797_SNP [dm6]	A	T	3.576e^-4	0.922	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19714155	2R_19714155_SNP [dm3] 2R_23826632_SNP [dm6]	C	T	3.579e^-4	0.922	INTRON CG5549
X	16984179	X_16984179_SNP [dm3] X_17090146_SNP [dm6]	G	A	3.585e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15567471	2L_15567471_SNP [dm3] 2L_15567471_SNP [dm6]	G	T	3.592e^-4	0.922	INTRON kek3
3R	2609294	3R_2609294_SNP [dm3] 3R_6783572_SNP [dm6]	C	T	3.604e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11602200	2L_11602200_SNP [dm3] 2L_11602200_SNP [dm6]	G	A	3.605e^-4	0.922	INTRON kek2
3L	10620084	3L_10620084_SNP [dm3] 3L_10626984_SNP [dm6]	C	T	3.609e^-4	0.922	SYNONYMOUS_CODING CG34238 DOWNSTREAM CG14151
3L	22143508	3L_22143508_SNP [dm3] 3L_22150408_SNP [dm6]	C	T	3.614e^-4	0.922	INTRON olf413
2L	1505662	2L_1505662_SNP [dm3] 2L_1505662_SNP [dm6]	A	G	3.623e^-4	0.922	INTERGENIC
2R	4794714	2R_4794714_SNP [dm3] 2R_8907209_SNP [dm6]	C	G	3.626e^-4	0.922	UPSTREAM CG30349 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	9967445	2L_9967445_SNP [dm3] 2L_9967445_SNP [dm6]	G	A	3.628e^-4	0.922	UTR_5_PRIME RpL13 UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9967448	2L_9967448_SNP [dm3] 2L_9967448_SNP [dm6]	G	T	3.628e^-4	0.922	START_GAINED RpL13 UTR_5_PRIME RpL13 UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9967456	2L_9967456_SNP [dm3] 2L_9967456_SNP [dm6]	G	T	3.628e^-4	0.922	START_GAINED RpL13 UTR_5_PRIME RpL13 UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20703517	3R_20703517_SNP [dm3] 3R_24877795_SNP [dm6]	C	G	3.629e^-4	0.922	NON_SYNONYMOUS_CODING CG31381 INTRON CG11089	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16562504	3L_16562504_DEL [dm3] 3L_16569404_DEL [dm6]	ACATTGGGCCA...	A	3.633e^-4	0.922	INTRON Mipp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15640534	X_15640534_SNP [dm3] X_15746501_SNP [dm6]	T	A	3.634e^-4	0.922	UPSTREAM Tcp-1zeta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	4312145	2L_4312145_SNP [dm3] 2L_4312145_SNP [dm6]	A	G	3.638e^-4	0.922	INTRON tutl
3L	21963378	3L_21963378_SNP [dm3] 3L_21970278_SNP [dm6]	T	C	3.644e^-4	0.922	DOWNSTREAM CS-2 INTERGENIC
2R	10040111	2R_10040111_SNP [dm3] 2R_14152606_SNP [dm6]	T	G	3.653e^-4	0.922	UTR_5_PRIME Rcd1 UPSTREAM pea INTRON Rcd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	12998224	2R_12998224_SNP [dm3] 2R_17110719_SNP [dm6]	G	A	3.654e^-4	0.922	INTRON CG15611	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10714482	2R_10714482_SNP [dm3] 2R_14826977_SNP [dm6]	C	A	3.663e^-4	0.922	INTERGENIC
2R	17306948	2R_17306948_SNP [dm3] 2R_21419443_SNP [dm6]	T	C	3.664e^-4	0.922	INTRON Sdc
2R	2435903	2R_2435903_DEL [dm3] 2R_6548398_DEL [dm6]	CCCT	G	3.675e^-4	0.922	INTRON jing	TF binding site mE1_TFBS_chinmo
2L	2257778	2L_2257778_SNP [dm3] 2L_2257778_SNP [dm6]	C	T	3.676e^-4	0.922	EXON CR44787	TF binding site BDTNP1_TFBS_twi
2R	4604685	2R_4604685_SNP [dm3] 2R_8717180_SNP [dm6]	G	A	3.685e^-4	0.922	NON_SYNONYMOUS_CODING PGRP-SC2 DOWNSTREAM CG14767	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18981232	3R_18981232_SNP [dm3] 3R_23155510_SNP [dm6]	T	G	3.686e^-4	0.922	NON_SYNONYMOUS_CODING unk INTRON unk	TF binding site mE1_TFBS_sens
3R	26893380	3R_26893380_SNP [dm3] 3R_31067658_SNP [dm6]	T	C	3.687e^-4	0.922	INTRON Sox100B
2L	5897259	2L_5897259_SNP [dm3] 2L_5897259_SNP [dm6]	C	T	3.695e^-4	0.922	INTERGENIC
3L	9317825	3L_9317825_SNP [dm3] 3L_9324725_SNP [dm6]	T	C	3.696e^-4	0.922	INTERGENIC
2R	11142647	2R_11142647_SNP [dm3] 2R_15255142_SNP [dm6]	T	C	3.708e^-4	0.922	SYNONYMOUS_CODING scb	TF binding site mE1_TFBS_cad
2R	2124843	2R_2124843_SNP [dm3] 2R_6237338_SNP [dm6]	C	T	3.711e^-4	0.922	SPLICE_SITE_REGION bin3 INTRON bin3	TF binding site mE1_TFBS_sbb
2L	16358051	2L_16358051_SNP [dm3] 2L_16358051_SNP [dm6]	C	A	3.715e^-4	0.922	INTERGENIC
2R	9256127	2R_9256127_SNP [dm3] 2R_13368622_SNP [dm6]	A	G	3.726e^-4	0.922	INTERGENIC
3R	20739448	3R_20739448_SNP [dm3] 3R_24913726_SNP [dm6]	A	C	3.731e^-4	0.922	DOWNSTREAM CR44267 INTRON PIG-S
3R	13363511	3R_13363511_SNP [dm3] 3R_17537789_SNP [dm6]	G	A	3.735e^-4	0.922	NON_SYNONYMOUS_CODING l_3_07882 DOWNSTREAM P5cr-2	TF binding site mE1_TFBS_sens
X	8726840	X_8726840_SNP [dm3] X_8832807_SNP [dm6]	T	A	3.743e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_HSA
X	739239	X_739239_SNP [dm3] X_845206_SNP [dm6]	G	T	3.746e^-4	0.922	UTR_3_PRIME CG14635 DOWNSTREAM CG3713 INTRON CG43867
2R	15285860	2R_15285860_SNP [dm3] 2R_19398355_SNP [dm6]	A	C	3.758e^-4	0.922	UTR_3_PRIME hts DOWNSTREAM hts
3L	3760214	3L_3760214_SNP [dm3] 3L_3760214_SNP [dm6]	A	G	3.760e^-4	0.922	INTRON CG32264
X	20486665	X_20486665_SNP [dm3] X_20615638_SNP [dm6]	A	G	3.765e^-4	0.922	INTRON RunxA
2R	16124229	2R_16124229_SNP [dm3] 2R_20236724_SNP [dm6]	C	T	3.773e^-4	0.922	SYNONYMOUS_CODING CG11099 DOWNSTREAM CG44625
3R	7812372	3R_7812372_SNP [dm3] 3R_11986650_SNP [dm6]	G	A	3.781e^-4	0.922	SYNONYMOUS_CODING mfas	TF binding site mE1_TFBS_cad
2R	11602365	2R_11602365_SNP [dm3] 2R_15714860_SNP [dm6]	C	T	3.785e^-4	0.922	INTERGENIC
3R	18264264	3R_18264264_DEL [dm3] 3R_22438542_DEL [dm6]	TGTTTT	T	3.787e^-4	0.922	INTERGENIC
2L	4263476	2L_4263476_SNP [dm3] 2L_4263476_SNP [dm6]	C	T	3.788e^-4	0.922	INTERGENIC
3R	25796132	3R_25796132_SNP [dm3] 3R_29970410_SNP [dm6]	G	A	3.796e^-4	0.922	UPSTREAM TkR99D INTERGENIC
3L	22144761	3L_22144761_SNP [dm3] 3L_22151661_SNP [dm6]	C	A	3.815e^-4	0.922	INTRON olf413
3R	2598816	3R_2598816_SNP [dm3] 3R_6773094_SNP [dm6]	C	T	3.823e^-4	0.922	INTRON CR42721
3R	10610427	3R_10610427_SNP [dm3] 3R_14784705_SNP [dm6]	A	G	3.826e^-4	0.922	INTRON jvl	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	24767113	3R_24767113_SNP [dm3] 3R_28941391_SNP [dm6]	A	T	3.826e^-4	0.922	INTRON CG14521
3R	18998428	3R_18998428_SNP [dm3] 3R_23172706_SNP [dm6]	C	G	3.833e^-4	0.922	INTRON Irk1
2R	8370696	2R_8370696_SNP [dm3] 2R_12483191_SNP [dm6]	T	C	3.835e^-4	0.922	INTRON Dh44-R2
2R	2126406	2R_2126406_SNP [dm3] 2R_6238901_SNP [dm6]	A	G	3.836e^-4	0.922	SYNONYMOUS_CODING bin3	TF binding site mE1_TFBS_cad
X	19610127	X_19610127_SNP [dm3] X_19716094_SNP [dm6]	C	T	3.837e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21991266	X_21991266_SNP [dm3] X_22589430_SNP [dm6]	C	A	3.843e^-4	0.922	INTRON Cda4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	19059209	3R_19059209_SNP [dm3] 3R_23233487_SNP [dm6]	G	A	3.849e^-4	0.922	INTRON CG4467	TF binding site mE1_TFBS_cad
3R	18926245	3R_18926245_SNP [dm3] 3R_23100523_SNP [dm6]	G	A	3.853e^-4	0.922	SYNONYMOUS_CODING CG6738 INTRON CG13830	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18996659	3R_18996659_SNP [dm3] 3R_23170937_SNP [dm6]	C	T	3.853e^-4	0.922	INTRON Irk1
3R	19018445	3R_19018445_SNP [dm3] 3R_23192723_SNP [dm6]	T	A	3.853e^-4	0.922	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5582399	2L_5582399_SNP [dm3] 2L_5582399_SNP [dm6]	C	A	3.863e^-4	0.922	INTERGENIC
2R	10421531	2R_10421531_SNP [dm3] 2R_14534026_SNP [dm6]	G	A	3.865e^-4	0.922	INTRON ttv
2L	5219589	2L_5219589_SNP [dm3] 2L_5219589_SNP [dm6]	A	G	3.869e^-4	0.922	UTR_3_PRIME tkv DOWNSTREAM TpnC25D
X	20486189	X_20486189_SNP [dm3] X_20615162_SNP [dm6]	A	C	3.875e^-4	0.922	INTRON RunxA	transposable element FlyBase
3R	18955275	3R_18955275_SNP [dm3] 3R_23129553_SNP [dm6]	G	T	3.878e^-4	0.922	INTRON hh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10417818	X_10417818_INS [dm3] X_10523785_INS [dm6]	A	ACATA	3.879e^-4	0.922	INTRON spri
2L	10692470	2L_10692470_SNP [dm3] 2L_10692470_SNP [dm6]	C	A	3.884e^-4	0.922	DOWNSTREAM CG17108 INTERGENIC
3R	13377441	3R_13377441_SNP [dm3] 3R_17551719_SNP [dm6]	C	T	3.885e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1389298	2R_1389298_DEL [dm3] 2R_5501793_DEL [dm6]	AATT	A	3.886e^-4	0.922	INTRON CG30438	transposable element FlyBase
3L	21339671	3L_21339671_SNP [dm3] 3L_21346571_SNP [dm6]	G	T	3.887e^-4	0.922	INTRON CG32436 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	8345982	2R_8345982_SNP [dm3] 2R_12458477_SNP [dm6]	C	G	3.891e^-4	0.922	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16502588	2L_16502588_SNP [dm3] 2L_16502588_SNP [dm6]	T	G	3.897e^-4	0.922	INTRON Tpr2
2L	2248863	2L_2248863_SNP [dm3] 2L_2248863_SNP [dm6]	T	A	3.899e^-4	0.922	INTERGENIC
3R	26482447	3R_26482447_DEL [dm3] 3R_30656725_DEL [dm6]	CCC	C	3.900e^-4	0.922	INTERGENIC
3L	1930070	3L_1930070_SNP [dm3] 3L_1930070_SNP [dm6]	C	G	3.904e^-4	0.922	INTRON Dbx
3L	11181567	3L_11181567_SNP [dm3] 3L_11188467_SNP [dm6]	C	T	3.908e^-4	0.922	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	16618925	X_16618925_SNP [dm3] X_16724892_SNP [dm6]	C	T	3.924e^-4	0.922	INTRON CG32572
2R	16749212	2R_16749212_SNP [dm3] 2R_20861707_SNP [dm6]	T	A	3.926e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10470820	3L_10470820_SNP [dm3] 3L_10477720_SNP [dm6]	T	A	3.930e^-4	0.922	INTERGENIC
2R	13817846	2R_13817846_SNP [dm3] 2R_17930341_SNP [dm6]	C	T	3.931e^-4	0.922	INTERGENIC
2R	14885307	2R_14885307_SNP [dm3] 2R_18997802_SNP [dm6]	C	T	3.938e^-4	0.922	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20297116	2L_20297116_SNP [dm3] 2L_20297116_SNP [dm6]	A	C	3.938e^-4	0.922	EXON CR43414
3R	18004547	3R_18004547_SNP [dm3] 3R_22178825_SNP [dm6]	G	T	3.942e^-4	0.922	INTRON SKIP
X	16502439	X_16502439_SNP [dm3] X_16608406_SNP [dm6]	A	T	3.955e^-4	0.922	INTRON Nup153	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13929982	2R_13929982_SNP [dm3] 2R_18042477_SNP [dm6]	G	C	3.962e^-4	0.922	UTR_3_PRIME CG5773 DOWNSTREAM CG5773
3R	2609085	3R_2609085_SNP [dm3] 3R_6783363_SNP [dm6]	A	T	3.971e^-4	0.922	INTERGENIC
X	19610128	X_19610128_SNP [dm3] X_19716095_SNP [dm6]	C	T	3.979e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18984007	3R_18984007_SNP [dm3] 3R_23158285_SNP [dm6]	G	C	3.982e^-4	0.922	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_sens
2R	14648178	2R_14648178_SNP [dm3] 2R_18760673_SNP [dm6]	T	G	3.982e^-4	0.922	UPSTREAM Jabba INTRON Jabba
2R	20544355	2R_20544355_SNP [dm3] 2R_24656832_SNP [dm6]	C	T	3.984e^-4	0.922	INTERGENIC
3R	7814724	3R_7814724_SNP [dm3] 3R_11989002_SNP [dm6]	A	G	3.989e^-4	0.922	INTRON mfas
2L	5454158	2L_5454158_SNP [dm3] 2L_5454158_SNP [dm6]	C	T	3.989e^-4	0.922	INTERGENIC
2R	10960102	2R_10960102_SNP [dm3] 2R_15072597_SNP [dm6]	C	G	3.995e^-4	0.922	INTERGENIC
3L	22591520	3L_22591520_SNP [dm3] 3L_22598420_SNP [dm6]	C	A	4.000e^-4	0.922	INTRON CG14459	TF binding site mE1_TFBS_cad
2R	10040372	2R_10040372_SNP [dm3] 2R_14152867_SNP [dm6]	G	A	4.002e^-4	0.922	SYNONYMOUS_CODING Rcd1 UPSTREAM pea & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
2L	5475563	2L_5475563_SNP [dm3] 2L_5475563_SNP [dm6]	C	T	4.006e^-4	0.922	INTERGENIC
2L	5290031	2L_5290031_SNP [dm3] 2L_5290031_SNP [dm6]	A	T	4.021e^-4	0.922	INTRON vri	TF binding site BDTNP1_TFBS_dl
2L	1421092	2L_1421092_SNP [dm3] 2L_1421092_SNP [dm6]	C	A	4.032e^-4	0.922	UPSTREAM lea INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2116229	2R_2116229_SNP [dm3] 2R_6228724_SNP [dm6]	T	C	4.037e^-4	0.922	UPSTREAM bin3 INTRON bin3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16541393	2L_16541393_SNP [dm3] 2L_16541393_SNP [dm6]	A	C	4.039e^-4	0.922	INTERGENIC
3R	18986026	3R_18986026_SNP [dm3] 3R_23160304_SNP [dm6]	C	T	4.040e^-4	0.922	UPSTREAM VhaAC39-2 DOWNSTREAM CG13829 INTERGENIC
2R	2101663	2R_2101663_SNP [dm3] 2R_6214158_SNP [dm6]	C	T	4.055e^-4	0.922	UPSTREAM bin3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	2609016	3R_2609016_SNP [dm3] 3R_6783294_SNP [dm6]	C	A	4.057e^-4	0.922	INTERGENIC
3L	1930087	3L_1930087_SNP [dm3] 3L_1930087_SNP [dm6]	T	C	4.058e^-4	0.922	INTRON Dbx
2L	1316454	2L_1316454_SNP [dm3] 2L_1316454_SNP [dm6]	A	T	4.060e^-4	0.922	INTERGENIC
3L	8844476	3L_8844476_SNP [dm3] 3L_8851376_SNP [dm6]	A	T	4.066e^-4	0.922	INTRON dally	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6895468	2L_6895468_SNP [dm3] 2L_6895468_SNP [dm6]	T	C	4.075e^-4	0.922	INTRON Nlg2
3R	2249382	3R_2249382_SNP [dm3] 3R_6423660_SNP [dm6]	T	C	4.091e^-4	0.922	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11912874	2R_11912874_SNP [dm3] 2R_16025369_SNP [dm6]	T	G	4.092e^-4	0.922	SPLICE_SITE_REGION casp DOWNSTREAM CG8399 INTRON casp
2L	10447989	2L_10447989_SNP [dm3] 2L_10447989_SNP [dm6]	C	T	4.098e^-4	0.922	SPLICE_SITE_REGION loh INTRON loh
3R	24971630	3R_24971630_SNP [dm3] 3R_29145908_SNP [dm6]	C	A	4.102e^-4	0.922	NON_SYNONYMOUS_CODING CG14511 DOWNSTREAM CG14516	TF binding site BDTNP1_TFBS_sna
3R	7812304	3R_7812304_SNP [dm3] 3R_11986582_SNP [dm6]	G	A	4.103e^-4	0.922	NON_SYNONYMOUS_CODING mfas	TF binding site mE1_TFBS_cad
X	19569008	X_19569008_SNP [dm3] X_19674975_SNP [dm6]	C	T	4.108e^-4	0.922	SYNONYMOUS_CODING et	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15145466	3L_15145466_SNP [dm3] 3L_15152366_SNP [dm6]	G	A	4.109e^-4	0.922	SPLICE_SITE_REGION FucTA INTRON FucTA
2L	16550871	2L_16550871_SNP [dm3] 2L_16550871_SNP [dm6]	A	C	4.110e^-4	0.922	UPSTREAM CG5968 INTRON CG42389
3L	14171909	3L_14171909_SNP [dm3] 3L_14178809_SNP [dm6]	G	A	4.114e^-4	0.922	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	21616772	3L_21616772_SNP [dm3] 3L_21623672_SNP [dm6]	T	C	4.114e^-4	0.922	INTRON CG7166
3R	1708415	3R_1708415_SNP [dm3] 3R_5882693_SNP [dm6]	C	T	4.114e^-4	0.922	INTRON CG34113
3R	17544463	3R_17544463_SNP [dm3] 3R_21718741_SNP [dm6]	C	T	4.121e^-4	0.922	SYNONYMOUS_CODING CG31176	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24223982	3R_24223982_SNP [dm3] 3R_28398260_SNP [dm6]	G	T	4.128e^-4	0.922	INTERGENIC
3L	2378323	3L_2378323_SNP [dm3] 3L_2378323_SNP [dm6]	A	T	4.135e^-4	0.922	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19171086	3R_19171086_SNP [dm3] 3R_23345364_SNP [dm6]	G	T	4.139e^-4	0.922	INTRON pnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	15413624	2L_15413624_SNP [dm3] 2L_15413624_SNP [dm6]	C	G	4.167e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22224848	3R_22224848_SNP [dm3] 3R_26399126_SNP [dm6]	C	T	4.177e^-4	0.922	INTERGENIC
2L	6266419	2L_6266419_SNP [dm3] 2L_6266419_SNP [dm6]	T	G	4.184e^-4	0.922	INTRON Ddr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8626992	2R_8626992_SNP [dm3] 2R_12739487_SNP [dm6]	A	G	4.187e^-4	0.922	INTRON CG42663
3L	4294198	3L_4294198_SNP [dm3] 3L_4294198_SNP [dm6]	T	C	4.190e^-4	0.922	UTR_3_PRIME dyl DOWNSTREAM CG1319
3L	10212611	3L_10212611_SNP [dm3] 3L_10219511_SNP [dm6]	G	A	4.191e^-4	0.922	DOWNSTREAM scramb1 INTRON CG32055
3L	15768374	3L_15768374_SNP [dm3] 3L_15775274_SNP [dm6]	C	G	4.191e^-4	0.922	INTERGENIC
2L	2514667	2L_2514667_SNP [dm3] 2L_2514667_SNP [dm6]	C	T	4.192e^-4	0.922	INTERGENIC
2L	3872593	2L_3872593_SNP [dm3] 2L_3872593_SNP [dm6]	G	A	4.201e^-4	0.922	UPSTREAM CG31957 DOWNSTREAM capu INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7314087	2R_7314087_SNP [dm3] 2R_11426582_SNP [dm6]	C	G	4.203e^-4	0.922	INTRON Drip
2R	2121040	2R_2121040_SNP [dm3] 2R_6233535_SNP [dm6]	T	C	4.209e^-4	0.922	UTR_5_PRIME bin3	TF binding site mE1_TFBS_inv
3R	10631882	3R_10631882_SNP [dm3] 3R_14806160_SNP [dm6]	G	T	4.210e^-4	0.922	UTR_3_PRIME btsz DOWNSTREAM btsz
3R	18879315	3R_18879315_SNP [dm3] 3R_23053593_SNP [dm6]	G	T	4.210e^-4	0.922	SYNONYMOUS_CODING p53 START_GAINED p53 UTR_5_PRIME p53 UPSTREAM p53 DOWNSTREAM Gr94a & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	2579113	2L_2579113_SNP [dm3] 2L_2579113_SNP [dm6]	G	C	4.210e^-4	0.922	UTR_3_PRIME Elba2 DOWNSTREAM CG3214	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	7565785	2L_7565785_SNP [dm3] 2L_7565785_SNP [dm6]	T	C	4.221e^-4	0.922	INTRON RapGAP1
3R	20775800	3R_20775800_SNP [dm3] 3R_24950078_SNP [dm6]	T	C	4.232e^-4	0.922	DOWNSTREAM CG13646 INTERGENIC
3L	6969060	3L_6969060_SNP [dm3] 3L_6975960_SNP [dm6]	A	T	4.235e^-4	0.922	UPSTREAM CR32385 INTRON Galphai	TF binding site BDTNP1_TFBS_dl
2R	10727993	2R_10727993_SNP [dm3] 2R_14840488_SNP [dm6]	C	T	4.238e^-4	0.922	INTERGENIC
X	16633069	X_16633069_SNP [dm3] X_16739036_SNP [dm6]	A	G	4.243e^-4	0.922	DOWNSTREAM TwdlZ INTRON CG9634
3R	25293925	3R_25293925_SNP [dm3] 3R_29468203_SNP [dm6]	G	A	4.249e^-4	0.922	INTRON Ptp99A
2L	5582394	2L_5582394_SNP [dm3] 2L_5582394_SNP [dm6]	T	G	4.254e^-4	0.922	INTERGENIC
2L	5718622	2L_5718622_SNP [dm3] 2L_5718622_SNP [dm6]	G	A	4.255e^-4	0.922	STOP_GAINED CG11149 DOWNSTREAM CG34011 INTRON CG11149
3R	25939022	3R_25939022_SNP [dm3] 3R_30113300_SNP [dm6]	C	T	4.259e^-4	0.922	INTRON sima
2L	16555963	2L_16555963_SNP [dm3] 2L_16555963_SNP [dm6]	A	T	4.261e^-4	0.922	INTRON CG42389
2L	18437522	2L_18437522_SNP [dm3] 2L_18437522_SNP [dm6]	A	G	4.262e^-4	0.922	INTERGENIC
2R	8379976	2R_8379976_SNP [dm3] 2R_12492471_SNP [dm6]	G	A	4.262e^-4	0.922	INTRON fdl
2L	11459942	2L_11459942_SNP [dm3] 2L_11459942_SNP [dm6]	G	T	4.262e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	5592470	X_5592470_SNP [dm3] X_5698437_SNP [dm6]	T	A	4.263e^-4	0.922	UPSTREAM CG4096 DOWNSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19900593	2L_19900593_SNP [dm3] 2L_19900593_SNP [dm6]	A	C	4.267e^-4	0.922	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1827084	3L_1827084_SNP [dm3] 3L_1827084_SNP [dm6]	A	C	4.270e^-4	0.922	INTRON Cpr62Ba	TF binding site mE1_TFBS_inv
3R	9720181	3R_9720181_SNP [dm3] 3R_13894459_SNP [dm6]	G	A	4.278e^-4	0.922	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5702245	3L_5702245_SNP [dm3] 3L_5709145_SNP [dm6]	G	A	4.281e^-4	0.922	INTRON sif
3L	11180273	3L_11180273_SNP [dm3] 3L_11187173_SNP [dm6]	C	A	4.290e^-4	0.922	INTRON GlcAT-P
2R	15671338	2R_15671338_SNP [dm3] 2R_19783833_SNP [dm6]	A	G	4.294e^-4	0.922	SYNONYMOUS_CODING Obp56g UPSTREAM CR45231
2L	10070608	2L_10070608_SNP [dm3] 2L_10070608_SNP [dm6]	T	C	4.298e^-4	0.922	INTRON CG44153
X	4196906	X_4196906_SNP [dm3] X_4302873_SNP [dm6]	C	A	4.312e^-4	0.922	UPSTREAM CG12692 INTERGENIC
3R	18988005	3R_18988005_SNP [dm3] 3R_23162283_SNP [dm6]	G	A	4.313e^-4	0.922	UPSTREAM CG13829 INTERGENIC
3L	21715776	3L_21715776_SNP [dm3] 3L_21722676_SNP [dm6]	T	G	4.313e^-4	0.922	INTERGENIC
3R	13378308	3R_13378308_SNP [dm3] 3R_17552586_SNP [dm6]	A	C	4.315e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24499065	3R_24499065_SNP [dm3] 3R_28673343_SNP [dm6]	C	T	4.319e^-4	0.922	INTERGENIC
3L	8878650	3L_8878650_SNP [dm3] 3L_8885550_SNP [dm6]	A	C	4.341e^-4	0.922	INTRON dally
3R	22192995	3R_22192995_SNP [dm3] 3R_26367273_SNP [dm6]	C	T	4.343e^-4	0.922	INTERGENIC
3L	10471254	3L_10471254_DEL [dm3] 3L_10478154_DEL [dm6]	AA	A	4.355e^-4	0.922	INTERGENIC
X	5408882	X_5408882_SNP [dm3] X_5514849_SNP [dm6]	G	T	4.356e^-4	0.922	INTERGENIC
X	12336913	X_12336913_SNP [dm3] X_12442880_SNP [dm6]	T	G	4.362e^-4	0.922	INTRON Pkcdelta
3R	26077101	3R_26077101_SNP [dm3] 3R_30251379_SNP [dm6]	G	A	4.370e^-4	0.922	DOWNSTREAM CG34299 INTRON CG9682	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_h
3L	2961039	3L_2961039_SNP [dm3] 3L_2961039_SNP [dm6]	G	A	4.373e^-4	0.922	UTR_5_PRIME CG34025 UPSTREAM Or63a
3R	10628865	3R_10628865_SNP [dm3] 3R_14803143_SNP [dm6]	G	A	4.379e^-4	0.922	NON_SYNONYMOUS_CODING CG14857 DOWNSTREAM btsz	TF binding site mE1_TFBS_cad
X	17249916	X_17249916_SNP [dm3] X_17355883_SNP [dm6]	A	C	4.397e^-4	0.922	INTERGENIC
3R	22247039	3R_22247039_SNP [dm3] 3R_26421317_SNP [dm6]	G	A	4.404e^-4	0.922	INTERGENIC
2R	5290904	2R_5290904_SNP [dm3] 2R_9403399_SNP [dm6]	C	A	4.433e^-4	0.922	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16497544	2R_16497544_SNP [dm3] 2R_20610039_SNP [dm6]	C	T	4.440e^-4	0.922	INTRON Hil	TF binding site mE1_TFBS_cad
2L	20924052	2L_20924052_SNP [dm3] 2L_20924052_SNP [dm6]	T	C	4.450e^-4	0.922	DOWNSTREAM RPA2 EXON CR33318
2L	15567646	2L_15567646_SNP [dm3] 2L_15567646_SNP [dm6]	C	T	4.457e^-4	0.922	INTRON kek3
2R	17141705	2R_17141705_SNP [dm3] 2R_21254200_SNP [dm6]	A	C	4.459e^-4	0.922	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7307487	3L_7307487_SNP [dm3] 3L_7314387_SNP [dm6]	T	C	4.467e^-4	0.922	INTERGENIC
2L	5300804	2L_5300804_SNP [dm3] 2L_5300804_SNP [dm6]	G	A	4.472e^-4	0.922	INTRON vri	TF binding site BDTNP1_TFBS_dl
2L	19950237	2L_19950237_DEL [dm3] 2L_19950237_DEL [dm6]	AATGAAAAAA	A	4.473e^-4	0.922	INTRON sick	TF binding site mE1_TFBS_HSA
2L	3783416	2L_3783416_SNP [dm3] 2L_3783416_SNP [dm6]	T	C	4.480e^-4	0.922	UTR_3_PRIME bowl
3R	24655813	3R_24655813_SNP [dm3] 3R_28830091_SNP [dm6]	A	C	4.480e^-4	0.922	INTRON WASp
3R	24513300	3R_24513300_SNP [dm3] 3R_28687578_SNP [dm6]	G	C	4.483e^-4	0.922	INTRON CG9990
2L	5419081	2L_5419081_SNP [dm3] 2L_5419081_SNP [dm6]	A	G	4.497e^-4	0.922	INTERGENIC
2R	9790047	2R_9790047_SNP [dm3] 2R_13902542_SNP [dm6]	C	A	4.498e^-4	0.922	INTRON shot	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	18637659	2R_18637659_SNP [dm3] 2R_22750154_SNP [dm6]	G	A	4.498e^-4	0.922	INTRON CG42260
2L	22134271	2L_22134271_SNP [dm3] 2L_22134271_SNP [dm6]	T	A	4.511e^-4	0.922	UPSTREAM CG42748 INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19714907	2R_19714907_INS [dm3] 2R_23827384_INS [dm6]	C	CTCCCCCA	4.511e^-4	0.922	INTRON CG5549	TF binding site mE1_TFBS_inv
X	4265008	X_4265008_SNP [dm3] X_4370975_SNP [dm6]	T	C	4.512e^-4	0.922	UTR_3_PRIME CG3626 INTRON CR43614
3R	10391456	3R_10391456_SNP [dm3] 3R_14565734_SNP [dm6]	G	A	4.513e^-4	0.922	UPSTREAM CG8087 & 1 other DOWNSTREAM CG31313 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	15106653	X_15106653_SNP [dm3] X_15212620_SNP [dm6]	T	C	4.514e^-4	0.922	INTERGENIC
3L	16183823	3L_16183823_SNP [dm3] 3L_16190723_SNP [dm6]	C	T	4.516e^-4	0.922	INTERGENIC
3L	11253527	3L_11253527_SNP [dm3] 3L_11260427_SNP [dm6]	A	C	4.517e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	2801075	3L_2801075_SNP [dm3] 3L_2801075_SNP [dm6]	T	A	4.520e^-4	0.922	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9660903	3L_9660903_SNP [dm3] 3L_9667803_SNP [dm6]	T	C	4.521e^-4	0.922	SYNONYMOUS_CODING fry
X	4435897	X_4435897_SNP [dm3] X_4541864_SNP [dm6]	G	C	4.525e^-4	0.922	UPSTREAM CG3568 INTRON CR32773 & 1 other	TF binding site mE1_TFBS_HSA
2R	16156219	2R_16156219_SNP [dm3] 2R_20268714_SNP [dm6]	T	C	4.526e^-4	0.922	NON_SYNONYMOUS_CODING CG8908	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17425435	2L_17425435_SNP [dm3] 2L_17425435_SNP [dm6]	G	A	4.531e^-4	0.922	INTRON Dif
3R	21609367	3R_21609367_SNP [dm3] 3R_25783645_SNP [dm6]	C	T	4.534e^-4	0.922	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	1197507	2L_1197507_INS [dm3] 2L_1197507_INS [dm6]	G	GACGAGGATGG...	4.537e^-4	0.922	DOWNSTREAM CG5001 & 1 other INTERGENIC
3R	3653456	3R_3653456_SNP [dm3] 3R_7827734_SNP [dm6]	G	T	4.547e^-4	0.922	INTRON CG34384
2L	8334226	2L_8334226_SNP [dm3] 2L_8334226_SNP [dm6]	A	T	4.548e^-4	0.922	INTERGENIC
2L	5894716	2L_5894716_SNP [dm3] 2L_5894716_SNP [dm6]	A	G	4.551e^-4	0.922	UPSTREAM Acp26Aa INTERGENIC
X	1837530	X_1837530_SNP [dm3] X_1943497_SNP [dm6]	A	G	4.551e^-4	0.922	INTRON Hr4	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12810422	2R_12810422_SNP [dm3] 2R_16922917_SNP [dm6]	A	G	4.555e^-4	0.922	INTERGENIC
3R	15655108	3R_15655108_SNP [dm3] 3R_19829386_SNP [dm6]	A	T	4.559e^-4	0.922	INTRON bnl
2R	8314476	2R_8314476_SNP [dm3] 2R_12426971_SNP [dm6]	A	C	4.564e^-4	0.922	UTR_3_PRIME CG8525 & 1 other	TF binding site mE1_TFBS_chinmo
2R	19500673	2R_19500673_SNP [dm3] 2R_23613150_SNP [dm6]	T	A	4.569e^-4	0.922	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_inv
3R	18807176	3R_18807176_SNP [dm3] 3R_22981454_SNP [dm6]	A	T	4.579e^-4	0.922	DOWNSTREAM Nha2 INTERGENIC
2R	11912895	2R_11912895_SNP [dm3] 2R_16025390_SNP [dm6]	C	G	4.580e^-4	0.922	NON_SYNONYMOUS_CODING casp DOWNSTREAM CG8399
2L	15567418	2L_15567418_SNP [dm3] 2L_15567418_SNP [dm6]	A	G	4.581e^-4	0.922	INTRON kek3
X	5635761	X_5635761_SNP [dm3] X_5741728_SNP [dm6]	C	G	4.583e^-4	0.922	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4939897	X_4939897_SNP [dm3] X_5045864_SNP [dm6]	A	T	4.598e^-4	0.922	INTRON CR44833	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	2377450	3L_2377450_SNP [dm3] 3L_2377450_SNP [dm6]	T	C	4.604e^-4	0.922	START_GAINED CG15877 UTR_5_PRIME CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	5740273	3R_5740273_SNP [dm3] 3R_9914551_SNP [dm6]	C	G	4.610e^-4	0.922	INTRON Glut4EF
3R	17356326	3R_17356326_SNP [dm3] 3R_21530604_SNP [dm6]	C	T	4.612e^-4	0.922	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7315545	2R_7315545_SNP [dm3] 2R_11428040_SNP [dm6]	G	T	4.616e^-4	0.922	UPSTREAM Drip INTRON Drip
2R	14323288	2R_14323288_SNP [dm3] 2R_18435783_SNP [dm6]	G	A	4.624e^-4	0.922	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21759175	3L_21759175_DEL [dm3] 3L_21766075_DEL [dm6]	CT	C	4.634e^-4	0.922	INTRON Syn1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24494397	3R_24494397_SNP [dm3] 3R_28668675_SNP [dm6]	T	A	4.635e^-4	0.922	UPSTREAM CG33346 INTERGENIC	insulator Insulator_Class_II.mE01
3R	24568474	3R_24568474_SNP [dm3] 3R_28742752_SNP [dm6]	G	A	4.635e^-4	0.922	INTRON AstA-R2
3R	15558384	3R_15558384_SNP [dm3] 3R_19732662_SNP [dm6]	C	A	4.636e^-4	0.922	INTRON GluClalpha
X	3335245	X_3335245_SNP [dm3] X_3441212_SNP [dm6]	T	G	4.655e^-4	0.922	INTRON CR44999 & 1 other
3R	18881955	3R_18881955_SNP [dm3] 3R_23056233_SNP [dm6]	G	T	4.659e^-4	0.922	SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2377435	3L_2377435_SNP [dm3] 3L_2377435_SNP [dm6]	T	C	4.667e^-4	0.922	START_GAINED CG15877 UTR_5_PRIME CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3674083	2L_3674083_SNP [dm3] 2L_3674083_SNP [dm6]	T	C	4.670e^-4	0.922	INTRON CG34340
3R	24568316	3R_24568316_SNP [dm3] 3R_28742594_SNP [dm6]	G	T	4.672e^-4	0.922	INTRON AstA-R2
3L	21607140	3L_21607140_SNP [dm3] 3L_21614040_SNP [dm6]	A	T	4.686e^-4	0.922	DOWNSTREAM TfAP-2 INTRON S1P
3R	13656550	3R_13656550_SNP [dm3] 3R_17830828_SNP [dm6]	C	T	4.687e^-4	0.922	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12541061	3L_12541061_SNP [dm3] 3L_12547961_SNP [dm6]	A	G	4.694e^-4	0.922	INTRON sowah
X	4263034	X_4263034_SNP [dm3] X_4369001_SNP [dm6]	C	T	4.694e^-4	0.922	SYNONYMOUS_CODING CG3626 UPSTREAM mir-983-1 & 2 others EXON CR43614	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25551430	3R_25551430_SNP [dm3] 3R_29725708_SNP [dm6]	C	A	4.694e^-4	0.922	UPSTREAM Kul & 1 other DOWNSTREAM CG18731 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19950226	2L_19950226_DEL [dm3] 2L_19950226_DEL [dm6]	GAAATGATA	G	4.710e^-4	0.922	INTRON sick	TF binding site mE1_TFBS_HSA
2L	16552251	2L_16552251_SNP [dm3] 2L_16552251_SNP [dm6]	G	A	4.711e^-4	0.922	INTRON CG42389	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	19065546	3R_19065546_SNP [dm3] 3R_23239824_SNP [dm6]	A	T	4.718e^-4	0.922	UTR_5_PRIME CG4467 INTRON CG4467
2R	10865093	2R_10865093_SNP [dm3] 2R_14977588_SNP [dm6]	A	C	4.733e^-4	0.922	INTRON ckn
3L	8134194	3L_8134194_SNP [dm3] 3L_8141094_SNP [dm6]	G	A	4.737e^-4	0.922	NON_SYNONYMOUS_CODING mus301 DOWNSTREAM CG13676	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7642678	X_7642678_SNP [dm3] X_7748645_SNP [dm6]	A	C	4.751e^-4	0.922	INTERGENIC
3L	7568619	3L_7568619_SNP [dm3] 3L_7575519_SNP [dm6]	G	T	4.759e^-4	0.922	INTERGENIC
3L	11665565	3L_11665565_SNP [dm3] 3L_11672465_SNP [dm6]	A	C	4.762e^-4	0.922	INTRON CG32085
3L	21860662	3L_21860662_SNP [dm3] 3L_21867562_SNP [dm6]	T	C	4.762e^-4	0.922	INTRON mub	TF binding site BDTNP1_TFBS_twi
X	14079601	X_14079601_SNP [dm3] X_14185568_SNP [dm6]	T	G	4.769e^-4	0.922	SYNONYMOUS_CODING CG32603	TF binding site mE1_TFBS_chinmo
2R	4279943	2R_4279943_SNP [dm3] 2R_8392438_SNP [dm6]	T	C	4.780e^-4	0.922	INTRON pdm3	TF binding site mE1_TFBS_cad
3R	10003819	3R_10003819_SNP [dm3] 3R_14178097_SNP [dm6]	A	G	4.803e^-4	0.922	SYNONYMOUS_CODING Dop1R1
2L	16013259	2L_16013259_SNP [dm3] 2L_16013259_SNP [dm6]	T	G	4.805e^-4	0.922	INTRON beat-Ic
2L	2671324	2L_2671324_SNP [dm3] 2L_2671324_SNP [dm6]	G	C	4.819e^-4	0.922	SYNONYMOUS_CODING Gr23a INTRON Gr23a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9462139	2R_9462139_SNP [dm3] 2R_13574634_SNP [dm6]	T	G	4.820e^-4	0.922	UPSTREAM CR44365 & 1 other INTERGENIC
2R	8925144	2R_8925144_SNP [dm3] 2R_13037639_SNP [dm6]	T	A	4.821e^-4	0.922	INTERGENIC
3R	19840237	3R_19840237_INS [dm3] 3R_24014515_INS [dm6]	C	CATC	4.822e^-4	0.922	INTRON KrT95D
3L	3769698	3L_3769698_SNP [dm3] 3L_3769698_SNP [dm6]	A	G	4.826e^-4	0.922	INTRON CG32264
3R	19082696	3R_19082696_SNP [dm3] 3R_23256974_SNP [dm6]	T	C	4.829e^-4	0.922	SYNONYMOUS_CODING wda	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3267412	3L_3267412_SNP [dm3] 3L_3267412_SNP [dm6]	C	T	4.834e^-4	0.922	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12873541	X_12873541_SNP [dm3] X_12979508_SNP [dm6]	A	T	4.840e^-4	0.922	INTERGENIC
3L	11241597	3L_11241597_SNP [dm3] 3L_11248497_SNP [dm6]	G	A	4.844e^-4	0.922	UPSTREAM CR44715 EXON CR44717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3571661	2L_3571661_SNP [dm3] 2L_3571661_SNP [dm6]	T	A	4.847e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	19227810	3R_19227810_SNP [dm3] 3R_23402088_SNP [dm6]	C	T	4.857e^-4	0.922	UPSTREAM Ir94d DOWNSTREAM CG17380 INTERGENIC
2R	5227264	2R_5227264_SNP [dm3] 2R_9339759_SNP [dm6]	C	T	4.871e^-4	0.922	INTRON CG13954 & 1 other
2L	16358059	2L_16358059_SNP [dm3] 2L_16358059_SNP [dm6]	T	C	4.876e^-4	0.922	INTERGENIC
2L	15855002	2L_15855002_SNP [dm3] 2L_15855002_SNP [dm6]	G	C	4.876e^-4	0.922	SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
2R	7369173	2R_7369173_SNP [dm3] 2R_11481668_SNP [dm6]	T	A	4.877e^-4	0.922	INTRON inv
X	3809819	X_3809819_SNP [dm3] X_3915786_SNP [dm6]	C	T	4.883e^-4	0.922	INTRON CG42541
X	17971895	X_17971895_SNP [dm3] X_18077862_SNP [dm6]	A	G	4.898e^-4	0.922	SYNONYMOUS_CODING Dhc16F DOWNSTREAM CG7536	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16124334	2R_16124334_SNP [dm3] 2R_20236829_SNP [dm6]	G	T	4.902e^-4	0.922	SYNONYMOUS_CODING CG11099 DOWNSTREAM CG44625
2R	7286202	2R_7286202_SNP [dm3] 2R_11398697_SNP [dm6]	C	T	4.905e^-4	0.922	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	19715652	2R_19715652_SNP [dm3] 2R_23828129_SNP [dm6]	C	A	4.907e^-4	0.922	INTRON CG5549
2R	14087287	2R_14087287_SNP [dm3] 2R_18199782_SNP [dm6]	A	T	4.911e^-4	0.922	INTERGENIC
2R	2120170	2R_2120170_SNP [dm3] 2R_6232665_SNP [dm6]	C	T	4.913e^-4	0.922	INTRON bin3
X	895026	X_895026_SNP [dm3] X_1000993_SNP [dm6]	T	C	4.921e^-4	0.922	INTERGENIC
3R	10391451	3R_10391451_SNP [dm3] 3R_14565729_SNP [dm6]	A	C	4.924e^-4	0.922	UPSTREAM CG8087 & 1 other DOWNSTREAM CG31313 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	8565632	3R_8565632_SNP [dm3] 3R_12739910_SNP [dm6]	G	A	4.927e^-4	0.922	SYNONYMOUS_CODING CG5724
2R	10865103	2R_10865103_SNP [dm3] 2R_14977598_SNP [dm6]	G	T	4.928e^-4	0.922	INTRON ckn
X	19428196	X_19428196_SNP [dm3] X_19534163_SNP [dm6]	C	A	4.931e^-4	0.922	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1215321	2L_1215321_SNP [dm3] 2L_1215321_SNP [dm6]	C	T	4.938e^-4	0.922	UPSTREAM CR45346 INTERGENIC
2R	11457033	2R_11457033_SNP [dm3] 2R_15569528_SNP [dm6]	G	T	4.941e^-4	0.922	NON_SYNONYMOUS_CODING CG30466 UTR_3_PRIME Cdk5 UPSTREAM Flo1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	4944226	2R_4944226_SNP [dm3] 2R_9056721_SNP [dm6]	A	T	4.947e^-4	0.922	INTRON CG13743	TF binding site BDTNP1_TFBS_twi
X	9170483	X_9170483_SNP [dm3] X_9276450_SNP [dm6]	G	T	4.948e^-4	0.922	DOWNSTREAM CG16892 INTRON c11.1	TF binding site mE1_TFBS_chinmo
2L	2527741	2L_2527741_SNP [dm3] 2L_2527741_SNP [dm6]	T	G	4.948e^-4	0.922	INTERGENIC
2R	5294933	2R_5294933_SNP [dm3] 2R_9407428_SNP [dm6]	G	T	4.967e^-4	0.922	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5294936	2R_5294936_SNP [dm3] 2R_9407431_SNP [dm6]	A	G	4.967e^-4	0.922	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5294937	2R_5294937_SNP [dm3] 2R_9407432_SNP [dm6]	G	C	4.967e^-4	0.922	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18871517	X_18871517_SNP [dm3] X_18977484_SNP [dm6]	C	G	4.968e^-4	0.922	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16856040	3R_16856040_SNP [dm3] 3R_21030318_SNP [dm6]	A	G	4.973e^-4	0.922	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17349455	X_17349455_SNP [dm3] X_17455422_SNP [dm6]	G	A	4.974e^-4	0.922	DOWNSTREAM CG43658 INTERGENIC
3L	11165590	3L_11165590_SNP [dm3] 3L_11172490_SNP [dm6]	T	G	4.979e^-4	0.922	DOWNSTREAM CG7616 INTERGENIC
2L	8255219	2L_8255219_SNP [dm3] 2L_8255219_SNP [dm6]	C	A	4.980e^-4	0.922	INTRON CG8086
2R	7313833	2R_7313833_SNP [dm3] 2R_11426328_SNP [dm6]	T	A	4.982e^-4	0.922	INTRON Drip
2L	10639394	2L_10639394_SNP [dm3] 2L_10639394_SNP [dm6]	A	G	4.987e^-4	0.922	UPSTREAM CG7329 & 1 other EXON CR45351
3R	16250591	3R_16250591_SNP [dm3] 3R_20424869_SNP [dm6]	C	G	4.988e^-4	0.922	INTRON Gfrl
2R	13014970	2R_13014970_SNP [dm3] 2R_17127465_SNP [dm6]	T	C	4.994e^-4	0.922	UPSTREAM CG15605 INTERGENIC
2L	5450200	2L_5450200_SNP [dm3] 2L_5450200_SNP [dm6]	C	T	4.996e^-4	0.922	INTERGENIC
X	12914672	X_12914672_SNP [dm3] X_13020639_SNP [dm6]	T	C	5.001e^-4	0.922	INTRON rad
2L	16664928	2L_16664928_SNP [dm3] 2L_16664928_SNP [dm6]	T	G	5.010e^-4	0.922	SYNONYMOUS_CODING Trpgamma	TF binding site mE1_TFBS_cad

Missing results

By genomic position
Variant impact
Gene name

pc_Defecation_Paerug phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results