DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.163e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.09434

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	4.6339	0.0986

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2242 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	4225845	2R_4225845_SNP [dm3] 2R_8338340_SNP [dm6]	G	C	1.943e^-6	0.733	INTRON pdm3
3L	506052	3L_506052_SNP [dm3] 3L_506052_SNP [dm6]	A	G	3.550e^-6	0.733	SPLICE_SITE_REGION klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	16810806	2L_16810806_SNP [dm3] 2L_16810806_SNP [dm6]	C	T	3.643e^-6	0.733	INTRON CG13280 & 1 other
X	20707576	X_20707576_SNP [dm3] X_20836549_SNP [dm6]	T	G	4.046e^-6	0.733	INTRON shakB
2R	7617805	2R_7617805_DEL [dm3] 2R_11730300_DEL [dm6]	CCCCTACCTATC...	TTTATTA	4.660e^-6	0.733	INTERGENIC
3L	3446266	3L_3446266_SNP [dm3] 3L_3446266_SNP [dm6]	C	T	5.176e^-6	0.733	INTRON eIF5B
2L	2455526	2L_2455526_SNP [dm3] 2L_2455526_SNP [dm6]	C	T	5.826e^-6	0.733	SYNONYMOUS_CODING dpp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6418761	3R_6418761_SNP [dm3] 3R_10593039_SNP [dm6]	G	T	5.857e^-6	0.733	INTRON hth	TF binding site mE1_TFBS_cad
3L	506082	3L_506082_SNP [dm3] 3L_506082_SNP [dm6]	T	G	6.133e^-6	0.733	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	506064	3L_506064_SNP [dm3] 3L_506064_SNP [dm6]	G	A	6.268e^-6	0.733	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	14889966	3R_14889966_SNP [dm3] 3R_19064244_SNP [dm6]	C	T	6.479e^-6	0.733	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3L	15002978	3L_15002978_SNP [dm3] 3L_15009878_SNP [dm6]	T	G	6.639e^-6	0.733	INTRON Reck
3R	17557665	3R_17557665_SNP [dm3] 3R_21731943_SNP [dm6]	C	A	7.286e^-6	0.733	INTERGENIC
X	20707550	X_20707550_SNP [dm3] X_20836523_SNP [dm6]	T	C	7.495e^-6	0.733	INTRON shakB
2R	19890320	2R_19890320_SNP [dm3] 2R_24002797_SNP [dm6]	G	C	7.799e^-6	0.733	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4660158	3L_4660158_SNP [dm3] 3L_4660158_SNP [dm6]	C	A	7.903e^-6	0.733	SYNONYMOUS_CODING axo
X	15357177	X_15357177_SNP [dm3] X_15463144_SNP [dm6]	G	A	8.407e^-6	0.733	NON_SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299 UPSTREAM shtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22305982	3R_22305982_SNP [dm3] 3R_26480260_SNP [dm6]	A	G	8.468e^-6	0.733	INTRON plum
2R	16649085	2R_16649085_SNP [dm3] 2R_20761580_SNP [dm6]	A	G	9.092e^-6	0.733	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	17557672	3R_17557672_SNP [dm3] 3R_21731950_SNP [dm6]	A	T	9.319e^-6	0.733	INTERGENIC
3R	17557656	3R_17557656_SNP [dm3] 3R_21731934_SNP [dm6]	C	T	9.718e^-6	0.733	INTERGENIC
3L	15002874	3L_15002874_SNP [dm3] 3L_15009774_SNP [dm6]	A	G	1.127e^-5	0.733	INTRON Reck
2R	13852021	2R_13852021_SNP [dm3] 2R_17964516_SNP [dm6]	A	G	1.128e^-5	0.733	INTERGENIC
3R	22305848	3R_22305848_SNP [dm3] 3R_26480126_SNP [dm6]	T	C	1.128e^-5	0.733	INTRON plum
3L	17249403	3L_17249403_INS [dm3] 3L_17256303_INS [dm6]	T	TT	1.153e^-5	0.733	INTRON CR43870
3L	18274222	3L_18274222_DEL [dm3] 3L_18281122_DEL [dm6]	ACGATCT	A	1.155e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11802950	3L_11802950_SNP [dm3] 3L_11809850_SNP [dm6]	A	G	1.196e^-5	0.733	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3446253	3L_3446253_SNP [dm3] 3L_3446253_SNP [dm6]	G	C	1.248e^-5	0.733	INTRON eIF5B
2R	16254800	2R_16254800_SNP [dm3] 2R_20367295_SNP [dm6]	G	A	1.269e^-5	0.733	INTERGENIC
3L	3446277	3L_3446277_SNP [dm3] 3L_3446277_SNP [dm6]	A	T	1.272e^-5	0.733	INTRON eIF5B
2R	19876961	2R_19876961_SNP [dm3] 2R_23989438_SNP [dm6]	C	T	1.276e^-5	0.733	SYNONYMOUS_CODING Pask UPSTREAM Phm	TF binding site mE1_TFBS_sens
X	13478687	X_13478687_SNP [dm3] X_13584654_SNP [dm6]	G	C	1.276e^-5	0.733	INTRON Tango13
3R	19655061	3R_19655061_SNP [dm3] 3R_23829339_SNP [dm6]	T	A	1.315e^-5	0.733	INTRON CG34355
X	5545351	X_5545351_SNP [dm3] X_5651318_SNP [dm6]	T	G	1.356e^-5	0.733	UTR_3_PRIME CG42265
2L	16810787	2L_16810787_SNP [dm3] 2L_16810787_SNP [dm6]	G	T	1.391e^-5	0.733	INTRON CG13280 & 1 other
3R	22751911	3R_22751911_SNP [dm3] 3R_26926189_SNP [dm6]	C	T	1.408e^-5	0.733	INTRON sda
X	20707599	X_20707599_SNP [dm3] X_20836572_SNP [dm6]	T	C	1.550e^-5	0.779	INTRON shakB
3R	9018365	3R_9018365_SNP [dm3] 3R_13192643_SNP [dm6]	A	G	1.634e^-5	0.779	DOWNSTREAM CG8141 INTERGENIC
3R	17521224	3R_17521224_SNP [dm3] 3R_21695502_SNP [dm6]	T	A	1.662e^-5	0.779	INTRON CG31176
3L	5858021	3L_5858021_SNP [dm3] 3L_5864921_SNP [dm6]	C	T	1.664e^-5	0.779	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7468654	3L_7468654_SNP [dm3] 3L_7475554_SNP [dm6]	G	T	1.703e^-5	0.779	UPSTREAM CG43292 INTERGENIC
X	13956412	X_13956412_SNP [dm3] X_14062379_SNP [dm6]	T	A	1.778e^-5	0.783	UPSTREAM Ste:CG33236 INTERGENIC
2R	18716599	2R_18716599_INS [dm3] 2R_22829076_INS [dm6]	G	GCTTG	1.804e^-5	0.783	UPSTREAM CG30272 DOWNSTREAM CG30274 & 1 other INTERGENIC
3R	17557655	3R_17557655_SNP [dm3] 3R_21731933_SNP [dm6]	A	G	1.875e^-5	0.783	INTERGENIC
2L	11070741	2L_11070741_SNP [dm3] 2L_11070741_SNP [dm6]	G	A	1.902e^-5	0.783	UPSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18712995	2R_18712995_SNP [dm3] 2R_22825472_SNP [dm6]	C	A	1.991e^-5	0.783	INTRON CG42284 & 1 other
2R	19890547	2R_19890547_SNP [dm3] 2R_24003024_SNP [dm6]	T	A	2.005e^-5	0.783	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19890623	2R_19890623_SNP [dm3] 2R_24003100_SNP [dm6]	C	A	2.005e^-5	0.783	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19655060	3R_19655060_SNP [dm3] 3R_23829338_SNP [dm6]	A	G	2.082e^-5	0.797	INTRON CG34355
3L	13890646	3L_13890646_SNP [dm3] 3L_13897546_SNP [dm6]	A	T	2.374e^-5	0.831	INTRON dysc
2R	14136737	2R_14136737_SNP [dm3] 2R_18249232_SNP [dm6]	C	A	2.435e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	5331534	3L_5331534_SNP [dm3] 3L_5338434_SNP [dm6]	G	A	2.474e^-5	0.831	INTERGENIC
2R	11286523	2R_11286523_SNP [dm3] 2R_15399018_SNP [dm6]	A	C	2.536e^-5	0.831	INTERGENIC
2L	2341641	2L_2341641_SNP [dm3] 2L_2341641_SNP [dm6]	T	A	2.569e^-5	0.831	INTRON CG9967 & 1 other
2L	16941270	2L_16941270_SNP [dm3] 2L_16941270_SNP [dm6]	C	A	2.681e^-5	0.831	INTERGENIC
3L	15002979	3L_15002979_DEL [dm3] 3L_15009879_DEL [dm6]	ATTCAGT	A	2.695e^-5	0.831	INTRON Reck
2L	19526516	2L_19526516_SNP [dm3] 2L_19526516_SNP [dm6]	C	A	2.733e^-5	0.831	UPSTREAM CG10137 & 1 other DOWNSTREAM CG10165 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	46269	X_46269_SNP [dm3] X_149882_SNP [dm6]	G	A	2.844e^-5	0.831	INTRON tyn
3R	19655066	3R_19655066_SNP [dm3] 3R_23829344_SNP [dm6]	T	G	2.936e^-5	0.831	INTRON CG34355
2L	2341647	2L_2341647_SNP [dm3] 2L_2341647_SNP [dm6]	T	C	2.937e^-5	0.831	INTRON CG9967 & 1 other
2L	3153569	2L_3153569_SNP [dm3] 2L_3153569_SNP [dm6]	A	G	3.165e^-5	0.831	UPSTREAM Mad INTRON Mad
X	10855548	X_10855548_SNP [dm3] X_10961515_SNP [dm6]	C	T	3.247e^-5	0.831	INTRON Myo10A
2R	16254819	2R_16254819_SNP [dm3] 2R_20367314_SNP [dm6]	A	C	3.330e^-5	0.831	INTERGENIC
3R	9018366	3R_9018366_SNP [dm3] 3R_13192644_SNP [dm6]	A	C	3.334e^-5	0.831	DOWNSTREAM CG8141 INTERGENIC
3R	17195296	3R_17195296_SNP [dm3] 3R_21369574_SNP [dm6]	T	C	3.337e^-5	0.831	SYNONYMOUS_CODING pre-mod_mdg4_-U DOWNSTREAM mod_mdg4_ & 2 others INTRON mod_mdg4_
2R	7102822	2R_7102822_SNP [dm3] 2R_11215317_SNP [dm6]	C	G	3.378e^-5	0.831	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3270631	3L_3270631_SNP [dm3] 3L_3270631_SNP [dm6]	G	A	3.415e^-5	0.831	UPSTREAM CG14960 INTERGENIC
3R	20226832	3R_20226832_SNP [dm3] 3R_24401110_SNP [dm6]	C	T	3.461e^-5	0.831	UTR_3_PRIME nAChRalpha1
3R	5367593	3R_5367593_SNP [dm3] 3R_9541871_SNP [dm6]	C	T	3.461e^-5	0.831	NON_SYNONYMOUS_CODING mura
2L	9722503	2L_9722503_SNP [dm3] 2L_9722503_SNP [dm6]	C	T	3.466e^-5	0.831	INTRON Nckx30C	TF binding site mE1_TFBS_sens
3L	15001599	3L_15001599_SNP [dm3] 3L_15008499_SNP [dm6]	T	C	3.471e^-5	0.831	INTRON Reck	TF binding site BDTNP1_TFBS_twi
3L	6879674	3L_6879674_SNP [dm3] 3L_6886574_SNP [dm6]	A	T	3.473e^-5	0.831	INTERGENIC
X	13478742	X_13478742_SNP [dm3] X_13584709_SNP [dm6]	G	T	3.492e^-5	0.831	INTRON Tango13
2L	6513173	2L_6513173_SNP [dm3] 2L_6513173_SNP [dm6]	A	G	3.509e^-5	0.831	INTRON CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	15015059	3L_15015059_SNP [dm3] 3L_15021959_SNP [dm6]	G	A	3.543e^-5	0.831	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	9387307	2R_9387307_SNP [dm3] 2R_13499802_SNP [dm6]	C	A	3.573e^-5	0.831	UPSTREAM mars INTRON drk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4583132	2L_4583132_SNP [dm3] 2L_4583132_SNP [dm6]	C	T	3.638e^-5	0.831	UPSTREAM CR43716 INTRON dp
3R	17462967	3R_17462967_SNP [dm3] 3R_21637245_SNP [dm6]	C	T	3.731e^-5	0.831	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10956562	X_10956562_SNP [dm3] X_11062529_SNP [dm6]	T	G	3.778e^-5	0.831	INTRON CG1537
3R	18304913	3R_18304913_SNP [dm3] 3R_22479191_SNP [dm6]	T	C	3.839e^-5	0.831	SYNONYMOUS_CODING Nrx-1	TF binding site mE1_TFBS_chinmo
X	15357163	X_15357163_SNP [dm3] X_15463130_SNP [dm6]	A	T	3.942e^-5	0.831	SYNONYMOUS_CODING CG6294 UTR_5_PRIME CG6299 UPSTREAM shtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	53148	X_53148_SNP [dm3] X_156761_SNP [dm6]	A	T	4.014e^-5	0.831	INTRON tyn
X	20707620	X_20707620_SNP [dm3] X_20836593_SNP [dm6]	G	A	4.073e^-5	0.831	INTRON shakB
3R	18657407	3R_18657407_SNP [dm3] 3R_22831685_SNP [dm6]	T	A	4.142e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4300358	2R_4300358_SNP [dm3] 2R_8412853_SNP [dm6]	A	T	4.215e^-5	0.831	INTERGENIC
2L	4360305	2L_4360305_SNP [dm3] 2L_4360305_SNP [dm6]	T	C	4.303e^-5	0.831	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	6438883	3R_6438883_SNP [dm3] 3R_10613161_SNP [dm6]	A	G	4.325e^-5	0.831	UTR_5_PRIME hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15420819	X_15420819_DEL [dm3] X_15526786_DEL [dm6]	AC	A	4.352e^-5	0.831	INTRON Ac13E
X	20707607	X_20707607_SNP [dm3] X_20836580_SNP [dm6]	A	T	4.384e^-5	0.831	INTRON shakB
3R	12359282	3R_12359282_SNP [dm3] 3R_16533560_SNP [dm6]	A	C	4.396e^-5	0.831	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	13956399	X_13956399_INS [dm3] X_14062366_INS [dm6]	C	CATTTGGCCGCCAACC...	4.574e^-5	0.831	UPSTREAM Ste:CG33236 INTERGENIC
2R	20119278	2R_20119278_SNP [dm3] 2R_24231755_SNP [dm6]	C	T	4.585e^-5	0.831	INTERGENIC
X	8355696	X_8355696_SNP [dm3] X_8461663_SNP [dm6]	A	C	4.614e^-5	0.831	SYNONYMOUS_CODING Es2 UPSTREAM CG15347
3R	25372754	3R_25372754_INS [dm3] 3R_29547032_INS [dm6]	A	AAATA	4.679e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	11028841	3L_11028841_SNP [dm3] 3L_11035741_SNP [dm6]	G	A	4.687e^-5	0.831	DOWNSTREAM CG43693 EXON CR44547	TF binding site mE1_TFBS_HSA
X	71569	X_71569_SNP [dm3] X_175182_SNP [dm6]	G	T	4.778e^-5	0.831	UPSTREAM tyn INTRON tyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4178767	2R_4178767_SNP [dm3] 2R_8291262_SNP [dm6]	A	T	4.813e^-5	0.831	INTERGENIC
3R	9018353	3R_9018353_SNP [dm3] 3R_13192631_SNP [dm6]	A	G	4.959e^-5	0.831	DOWNSTREAM CG8141 INTERGENIC
2R	19890263	2R_19890263_SNP [dm3] 2R_24002740_SNP [dm6]	G	T	5.015e^-5	0.831	NON_SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18714993	2R_18714993_SNP [dm3] 2R_22827470_SNP [dm6]	G	T	5.022e^-5	0.831	INTRON CG30274 & 1 other
2R	18715013	2R_18715013_SNP [dm3] 2R_22827490_SNP [dm6]	G	A	5.022e^-5	0.831	INTRON CG30274 & 1 other
3L	4013181	3L_4013181_SNP [dm3] 3L_4013181_SNP [dm6]	G	C	5.035e^-5	0.831	INTERGENIC
3L	21231125	3L_21231125_SNP [dm3] 3L_21238025_SNP [dm6]	A	G	5.114e^-5	0.831	INTRON Eip78C	transposable element FlyBase
3L	13895104	3L_13895104_INS [dm3] 3L_13902004_INS [dm6]	T	TA	5.136e^-5	0.831	UTR_5_PRIME dysc
3R	9716311	3R_9716311_SNP [dm3] 3R_13890589_SNP [dm6]	G	C	5.198e^-5	0.831	INTERGENIC
2R	18715039	2R_18715039_DEL [dm3] 2R_22827516_DEL [dm6]	AGAACCAATTTAAAGTTTAG...	A	5.236e^-5	0.831	INTRON CG30274 & 1 other
3L	15015309	3L_15015309_SNP [dm3] 3L_15022209_SNP [dm6]	G	A	5.251e^-5	0.831	INTRON Sytbeta
3L	2556403	3L_2556403_SNP [dm3] 3L_2556403_SNP [dm6]	C	T	5.293e^-5	0.831	UTR_3_PRIME msn
2L	9431918	2L_9431918_SNP [dm3] 2L_9431918_SNP [dm6]	T	C	5.297e^-5	0.831	UPSTREAM FucTB INTRON scat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	16946070	X_16946070_SNP [dm3] X_17052037_SNP [dm6]	T	G	5.371e^-5	0.831	INTRON CG45002
2R	17855626	2R_17855626_SNP [dm3] 2R_21968121_SNP [dm6]	A	G	5.384e^-5	0.831	SYNONYMOUS_CODING ppk9
3L	21231100	3L_21231100_SNP [dm3] 3L_21238000_SNP [dm6]	C	A	5.457e^-5	0.831	INTRON Eip78C	transposable element FlyBase
2R	19889775	2R_19889775_SNP [dm3] 2R_24002252_SNP [dm6]	G	A	5.581e^-5	0.831	INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18849258	X_18849258_SNP [dm3] X_18955225_SNP [dm6]	A	C	5.590e^-5	0.831	INTRON CG43759
2L	4572428	2L_4572428_SNP [dm3] 2L_4572428_SNP [dm6]	C	G	5.694e^-5	0.831	INTRON dp	TF binding site mE1_TFBS_cad
3L	1272417	3L_1272417_SNP [dm3] 3L_1272417_SNP [dm6]	G	A	5.764e^-5	0.831	INTRON CG9134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11070761	2L_11070761_SNP [dm3] 2L_11070761_SNP [dm6]	G	A	5.766e^-5	0.831	UPSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23083408	3R_23083408_SNP [dm3] 3R_27257686_SNP [dm6]	A	C	5.770e^-5	0.831	INTRON woc	TF binding site mE1_TFBS_cad
2R	14913826	2R_14913826_SNP [dm3] 2R_19026321_SNP [dm6]	A	G	5.892e^-5	0.831	INTRON 5-HT1B
X	9869309	X_9869309_DEL [dm3] X_9975276_DEL [dm6]	CCAC	C	5.941e^-5	0.831	INTRON CG43386
3L	21231024	3L_21231024_SNP [dm3] 3L_21237924_SNP [dm6]	T	G	6.138e^-5	0.831	INTRON Eip78C	transposable element FlyBase
2R	14169800	2R_14169800_SNP [dm3] 2R_18282295_SNP [dm6]	A	G	6.167e^-5	0.831	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11103000	X_11103000_SNP [dm3] X_11208967_SNP [dm6]	G	T	6.306e^-5	0.831	INTERGENIC
3L	2759376	3L_2759376_SNP [dm3] 3L_2759376_SNP [dm6]	T	G	6.364e^-5	0.831	INTRON Mrtf
3L	11001197	3L_11001197_INS [dm3] 3L_11008097_INS [dm6]	T	TATC	6.367e^-5	0.831	INTRON klu	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12394137	2L_12394137_SNP [dm3] 2L_12394137_SNP [dm6]	C	A	6.415e^-5	0.831	INTRON bru-2
2L	21191861	2L_21191861_SNP [dm3] 2L_21191861_SNP [dm6]	G	A	6.420e^-5	0.831	INTRON Ret
2R	18308188	2R_18308188_SNP [dm3] 2R_22420683_SNP [dm6]	G	A	6.445e^-5	0.831	UPSTREAM rad50 & 1 other INTERGENIC
3L	9685195	3L_9685195_SNP [dm3] 3L_9692095_SNP [dm6]	G	A	6.462e^-5	0.831	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	11277819	3L_11277819_SNP [dm3] 3L_11284719_SNP [dm6]	G	C	6.585e^-5	0.831	UPSTREAM CR45404 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8874449	3L_8874449_SNP [dm3] 3L_8881349_SNP [dm6]	A	G	6.611e^-5	0.831	INTRON dally
2R	3428405	2R_3428405_SNP [dm3] 2R_7540900_SNP [dm6]	C	T	6.663e^-5	0.831	INTRON Corin
3L	9965973	3L_9965973_SNP [dm3] 3L_9972873_SNP [dm6]	A	G	6.665e^-5	0.831	SPLICE_SITE_REGION vnc & 1 other UTR_5_PRIME CG42455 & 1 other UPSTREAM CG6674 INTRON vnc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1285091	2L_1285091_SNP [dm3] 2L_1285091_SNP [dm6]	T	G	6.674e^-5	0.831	INTRON robo3
3L	511168	3L_511168_SNP [dm3] 3L_511168_SNP [dm6]	C	T	6.709e^-5	0.831	INTRON klar
X	186877	X_186877_SNP [dm3] X_292844_SNP [dm6]	G	A	6.866e^-5	0.831	INTRON CG3777 & 1 other	transposable element FlyBase
3R	17521075	3R_17521075_INS [dm3] 3R_21695353_INS [dm6]	A	ACATTA	6.986e^-5	0.831	INTRON CG31176
2R	20444602	2R_20444602_SNP [dm3] 2R_24557079_SNP [dm6]	G	A	7.033e^-5	0.831	UTR_3_PRIME ITP UPSTREAM CG4622 DOWNSTREAM ITP INTRON ITP
2R	3843103	2R_3843103_SNP [dm3] 2R_7955598_SNP [dm6]	T	C	7.162e^-5	0.831	UTR_5_PRIME CG14764 UPSTREAM CG2906	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	12612827	X_12612827_SNP [dm3] X_12718794_SNP [dm6]	G	A	7.167e^-5	0.831	UPSTREAM CR43963 INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3126221	3L_3126221_SNP [dm3] 3L_3126221_SNP [dm6]	T	A	7.185e^-5	0.831	INTRON prominin-like	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22267721	3R_22267721_SNP [dm3] 3R_26441999_SNP [dm6]	C	T	7.243e^-5	0.831	INTRON tx
X	7917881	X_7917881_SNP [dm3] X_8023848_SNP [dm6]	G	A	7.264e^-5	0.831	SYNONYMOUS_CODING Tbh
3L	11998225	3L_11998225_SNP [dm3] 3L_12005125_SNP [dm6]	A	G	7.356e^-5	0.831	INTRON CG6928
2R	16649087	2R_16649087_SNP [dm3] 2R_20761582_SNP [dm6]	A	T	7.421e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	19708670	3R_19708670_SNP [dm3] 3R_23882948_SNP [dm6]	C	T	7.447e^-5	0.831	INTRON Pli
3L	1238708	3L_1238708_SNP [dm3] 3L_1238708_SNP [dm6]	A	G	7.575e^-5	0.831	UPSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_cnc
3L	14994382	3L_14994382_SNP [dm3] 3L_15001282_SNP [dm6]	T	C	7.657e^-5	0.831	UTR_3_PRIME Prosbeta2 & 1 other	TF binding site mE1_TFBS_inv
3L	16891930	3L_16891930_SNP [dm3] 3L_16898830_SNP [dm6]	T	A	7.667e^-5	0.831	UPSTREAM Lmpt INTRON Lmpt
3L	13575107	3L_13575107_DEL [dm3] 3L_13582007_DEL [dm6]	GGT	G	7.679e^-5	0.831	INTRON bru-3
2L	7244432	2L_7244432_SNP [dm3] 2L_7244432_SNP [dm6]	G	A	7.691e^-5	0.831	INTRON Ndae1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	17556125	3R_17556125_SNP [dm3] 3R_21730403_SNP [dm6]	C	T	7.710e^-5	0.831	UPSTREAM CR43096 INTERGENIC	TF binding site mE1_TFBS_kn
2L	325884	2L_325884_SNP [dm3] 2L_325884_SNP [dm6]	G	A	7.735e^-5	0.831	NON_SYNONYMOUS_CODING CG43755 INTRON Plc21C
2L	4358026	2L_4358026_SNP [dm3] 2L_4358026_SNP [dm6]	G	A	7.797e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cnc mE1_TFBS_HSA
3L	14468533	3L_14468533_SNP [dm3] 3L_14475433_SNP [dm6]	T	G	7.815e^-5	0.831	INTRON bbg
2L	10261376	2L_10261376_SNP [dm3] 2L_10261376_SNP [dm6]	A	G	7.866e^-5	0.831	UPSTREAM Pten DOWNSTREAM Rsf1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	1272557	3L_1272557_SNP [dm3] 3L_1272557_SNP [dm6]	G	A	7.888e^-5	0.831	INTRON CG9134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2341732	2L_2341732_SNP [dm3] 2L_2341732_SNP [dm6]	G	A	7.901e^-5	0.831	INTRON CG9967 & 1 other
2L	19791368	2L_19791368_INS [dm3] 2L_19791368_INS [dm6]	G	GGA	7.902e^-5	0.831	UPSTREAM CG10466 INTRON CdGAPr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	16616563	2R_16616563_SNP [dm3] 2R_20729058_SNP [dm6]	A	T	8.005e^-5	0.831	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4712537	3L_4712537_SNP [dm3] 3L_4712537_SNP [dm6]	A	T	8.085e^-5	0.831	INTRON RhoGEF64C
2R	18200082	2R_18200082_SNP [dm3] 2R_22312577_SNP [dm6]	C	T	8.085e^-5	0.831	UPSTREAM CR44758 & 1 other INTERGENIC
2R	8279317	2R_8279317_SNP [dm3] 2R_12391812_SNP [dm6]	T	C	8.087e^-5	0.831	UPSTREAM Cpr49Ad INTERGENIC
2R	11681766	2R_11681766_SNP [dm3] 2R_15794261_SNP [dm6]	T	C	8.112e^-5	0.831	UTR_5_PRIME tun INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13890684	3L_13890684_SNP [dm3] 3L_13897584_SNP [dm6]	C	T	8.137e^-5	0.831	INTRON dysc
3L	13890515	3L_13890515_SNP [dm3] 3L_13897415_SNP [dm6]	G	T	8.144e^-5	0.831	INTRON dysc
2R	9820231	2R_9820231_SNP [dm3] 2R_13932726_SNP [dm6]	T	A	8.151e^-5	0.831	INTRON shot
2R	9119993	2R_9119993_SNP [dm3] 2R_13232488_SNP [dm6]	A	C	8.153e^-5	0.831	SYNONYMOUS_CODING CG4670 DOWNSTREAM fsd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	18849257	X_18849257_SNP [dm3] X_18955224_SNP [dm6]	T	G	8.173e^-5	0.831	INTRON CG43759
X	4649693	X_4649693_SNP [dm3] X_4755660_SNP [dm6]	G	C	8.237e^-5	0.831	INTERGENIC
3R	11236293	3R_11236293_SNP [dm3] 3R_15410571_SNP [dm6]	G	T	8.252e^-5	0.831	UPSTREAM Atx2 INTRON Atx2	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3L	13894860	3L_13894860_SNP [dm3] 3L_13901760_SNP [dm6]	A	T	8.396e^-5	0.831	UTR_5_PRIME dysc
2L	11967605	2L_11967605_SNP [dm3] 2L_11967605_SNP [dm6]	C	G	8.411e^-5	0.831	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	15002882	3L_15002882_SNP [dm3] 3L_15009782_SNP [dm6]	G	T	8.426e^-5	0.831	INTRON Reck
3L	8874469	3L_8874469_SNP [dm3] 3L_8881369_SNP [dm6]	G	A	8.486e^-5	0.831	INTRON dally
3L	11336708	3L_11336708_DEL [dm3] 3L_11343608_DEL [dm6]	AA	G	8.525e^-5	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
2R	17706064	2R_17706064_SNP [dm3] 2R_21818559_SNP [dm6]	G	T	8.532e^-5	0.831	INTERGENIC
2R	5557319	2R_5557319_SNP [dm3] 2R_9669814_SNP [dm6]	G	A	8.535e^-5	0.831	INTRON Mmp2
3L	3607107	3L_3607107_SNP [dm3] 3L_3607107_SNP [dm6]	A	G	8.558e^-5	0.831	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6015734	3L_6015734_SNP [dm3] 3L_6022634_SNP [dm6]	T	G	8.603e^-5	0.831	INTRON PVRAP
2L	2341755	2L_2341755_INS [dm3] 2L_2341755_INS [dm6]	T	TGAACATTACT...	8.619e^-5	0.831	INTRON CG9967 & 1 other
2L	6513177	2L_6513177_SNP [dm3] 2L_6513177_SNP [dm6]	G	C	8.850e^-5	0.831	INTRON CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	18782316	2R_18782316_SNP [dm3] 2R_22894793_SNP [dm6]	A	G	8.919e^-5	0.831	SYNONYMOUS_CODING CG3700 DOWNSTREAM MED23	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7468605	3L_7468605_SNP [dm3] 3L_7475505_SNP [dm6]	T	C	8.982e^-5	0.831	UPSTREAM CG43292 INTERGENIC
3R	7754718	3R_7754718_SNP [dm3] 3R_11928996_SNP [dm6]	G	C	8.994e^-5	0.831	INTRON Cad87A
3L	4567694	3L_4567694_SNP [dm3] 3L_4567694_SNP [dm6]	C	T	8.997e^-5	0.831	INTRON CG42540
3L	3124794	3L_3124794_SNP [dm3] 3L_3124794_SNP [dm6]	T	C	9.042e^-5	0.831	INTRON prominin-like
2R	15478972	2R_15478972_SNP [dm3] 2R_19591467_SNP [dm6]	C	T	9.150e^-5	0.831	INTRON sm
3L	6879667	3L_6879667_INS [dm3] 3L_6886567_INS [dm6]	T	TC	9.158e^-5	0.831	INTERGENIC
3L	9685194	3L_9685194_SNP [dm3] 3L_9692094_SNP [dm6]	G	C	9.205e^-5	0.831	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	6693262	3L_6693262_SNP [dm3] 3L_6700162_SNP [dm6]	C	T	9.284e^-5	0.831	INTRON SP1173
2R	19899896	2R_19899896_SNP [dm3] 2R_24012373_SNP [dm6]	G	A	9.298e^-5	0.831	SYNONYMOUS_CODING Unc-89 UPSTREAM Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4329867	2R_4329867_SNP [dm3] 2R_8442362_SNP [dm6]	T	A	9.302e^-5	0.831	INTRON Cyp4ad1
3L	18203641	3L_18203641_SNP [dm3] 3L_18210541_SNP [dm6]	T	A	9.311e^-5	0.831	INTERGENIC
2R	7617240	2R_7617240_SNP [dm3] 2R_11729735_SNP [dm6]	A	T	9.314e^-5	0.831	INTERGENIC
X	3463429	X_3463429_SNP [dm3] X_3569396_SNP [dm6]	G	A	9.376e^-5	0.831	UPSTREAM ppk8 INTRON ppk8 & 1 other
2L	1973891	2L_1973891_SNP [dm3] 2L_1973891_SNP [dm6]	T	C	9.380e^-5	0.831	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13890781	3L_13890781_SNP [dm3] 3L_13897681_SNP [dm6]	T	C	9.460e^-5	0.831	INTRON dysc
X	165683	X_165683_SNP [dm3] X_271650_SNP [dm6]	A	C	9.485e^-5	0.831	INTRON ewg	TF binding site mE1_TFBS_cad
3L	5147473	3L_5147473_SNP [dm3] 3L_5154373_SNP [dm6]	A	G	9.503e^-5	0.831	SYNONYMOUS_CODING Srp54k
2R	2353346	2R_2353346_SNP [dm3] 2R_6465841_SNP [dm6]	C	T	9.550e^-5	0.831	INTERGENIC	transposable element FlyBase
2R	12003637	2R_12003637_SNP [dm3] 2R_16116132_SNP [dm6]	A	C	9.553e^-5	0.831	SYNONYMOUS_CODING Asph UTR_3_PRIME Asph UPSTREAM Jhedup
3L	15913844	3L_15913844_SNP [dm3] 3L_15920744_SNP [dm6]	A	C	9.604e^-5	0.831	INTRON sff	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	21253194	2L_21253194_SNP [dm3] 2L_21253194_SNP [dm6]	T	C	9.620e^-5	0.831	INTRON Hr39	transposable element FlyBase
3L	12351183	3L_12351183_SNP [dm3] 3L_12358083_SNP [dm6]	C	T	9.629e^-5	0.831	INTERGENIC
X	18474173	X_18474173_SNP [dm3] X_18580140_SNP [dm6]	A	G	9.811e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	2759251	3L_2759251_SNP [dm3] 3L_2759251_SNP [dm6]	A	G	9.831e^-5	0.831	INTRON Mrtf
2R	16643788	2R_16643788_SNP [dm3] 2R_20756283_SNP [dm6]	T	C	9.833e^-5	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8874445	3L_8874445_SNP [dm3] 3L_8881345_SNP [dm6]	A	G	9.916e^-5	0.831	INTRON dally
3L	6879650	3L_6879650_SNP [dm3] 3L_6886550_SNP [dm6]	G	A	9.973e^-5	0.831	INTERGENIC
2R	6883015	2R_6883015_SNP [dm3] 2R_10995510_SNP [dm6]	A	G	1.005e^-4	0.831	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11967670	2L_11967670_SNP [dm3] 2L_11967670_SNP [dm6]	T	A	1.005e^-4	0.831	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	18744744	3R_18744744_SNP [dm3] 3R_22919022_SNP [dm6]	C	G	1.015e^-4	0.831	INTRON klg
3L	8874451	3L_8874451_SNP [dm3] 3L_8881351_SNP [dm6]	C	A	1.018e^-4	0.831	INTRON dally
X	21003453	X_21003453_SNP [dm3] X_21132426_SNP [dm6]	A	T	1.021e^-4	0.831	UTR_5_PRIME CG34120
2R	3846290	2R_3846290_SNP [dm3] 2R_7958785_SNP [dm6]	T	C	1.029e^-4	0.831	SYNONYMOUS_CODING CG2915 DOWNSTREAM CG2906	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3L	12964296	3L_12964296_SNP [dm3] 3L_12971196_SNP [dm6]	G	T	1.035e^-4	0.831	DOWNSTREAM CG10748 INTERGENIC
2L	1997351	2L_1997351_DEL [dm3] 2L_1997351_DEL [dm6]	TGT	T	1.045e^-4	0.831	UTR_3_PRIME CG33543
3R	10001398	3R_10001398_SNP [dm3] 3R_14175676_SNP [dm6]	A	T	1.047e^-4	0.831	UTR_3_PRIME Dop1R1
2R	18716568	2R_18716568_SNP [dm3] 2R_22829045_SNP [dm6]	A	T	1.050e^-4	0.831	UPSTREAM CG30272 DOWNSTREAM CG30274 & 1 other INTERGENIC
2R	19882730	2R_19882730_SNP [dm3] 2R_23995207_SNP [dm6]	C	T	1.052e^-4	0.831	UPSTREAM CG3860 DOWNSTREAM Unc-89 INTERGENIC
3L	13890526	3L_13890526_SNP [dm3] 3L_13897426_SNP [dm6]	T	A	1.056e^-4	0.831	INTRON dysc
3L	7468579	3L_7468579_DEL [dm3] 3L_7475479_DEL [dm6]	AACACCAC	A	1.056e^-4	0.831	UPSTREAM CG43292 INTERGENIC
3R	17521123	3R_17521123_SNP [dm3] 3R_21695401_SNP [dm6]	G	T	1.064e^-4	0.831	INTRON CG31176
3L	6879666	3L_6879666_SNP [dm3] 3L_6886566_SNP [dm6]	T	C	1.066e^-4	0.831	INTERGENIC
2R	16648877	2R_16648877_SNP [dm3] 2R_20761372_SNP [dm6]	G	T	1.076e^-4	0.831	INTERGENIC
2R	19890350	2R_19890350_SNP [dm3] 2R_24002827_SNP [dm6]	G	A	1.079e^-4	0.831	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	246872	2L_246872_SNP [dm3] 2L_246872_SNP [dm6]	A	T	1.085e^-4	0.831	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4299289	2R_4299289_SNP [dm3] 2R_8411784_SNP [dm6]	G	A	1.095e^-4	0.831	UPSTREAM CG2121 INTERGENIC
2R	16254811	2R_16254811_DEL [dm3] 2R_20367306_DEL [dm6]	AA	A	1.104e^-4	0.831	INTERGENIC
2L	4456696	2L_4456696_SNP [dm3] 2L_4456696_SNP [dm6]	T	C	1.106e^-4	0.831	DOWNSTREAM RpL27A & 1 other INTRON Gs1l	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	6358139	2L_6358139_SNP [dm3] 2L_6358139_SNP [dm6]	A	T	1.108e^-4	0.831	SPLICE_SITE_REGION CG9500 DOWNSTREAM CR44777 INTRON CG9500
2R	18715323	2R_18715323_SNP [dm3] 2R_22827800_SNP [dm6]	A	C	1.109e^-4	0.831	SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
2R	14819812	2R_14819812_DEL [dm3] 2R_18932307_DEL [dm6]	CGCTATAATTAAGCGAATGC...	C	1.109e^-4	0.831	INTRON sano	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	20707765	X_20707765_SNP [dm3] X_20836738_SNP [dm6]	C	G	1.126e^-4	0.831	INTRON shakB
3L	6879662	3L_6879662_SNP [dm3] 3L_6886562_SNP [dm6]	T	A	1.128e^-4	0.831	INTERGENIC
2L	14112018	2L_14112018_SNP [dm3] 2L_14112018_SNP [dm6]	A	G	1.130e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6195441	X_6195441_DEL [dm3] X_6301408_DEL [dm6]	TT	G	1.137e^-4	0.831	UPSTREAM CG12219 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	9101897	3R_9101897_SNP [dm3] 3R_13276175_SNP [dm6]	A	C	1.145e^-4	0.831	INTERGENIC
3L	5985881	3L_5985881_SNP [dm3] 3L_5992781_SNP [dm6]	G	T	1.150e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	10291967	2L_10291967_SNP [dm3] 2L_10291967_SNP [dm6]	T	C	1.152e^-4	0.831	DOWNSTREAM Hand INTRON CG5604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	11021031	3L_11021031_SNP [dm3] 3L_11027931_SNP [dm6]	T	C	1.154e^-4	0.831	DOWNSTREAM CG32079 INTRON CG32081
3R	17521056	3R_17521056_SNP [dm3] 3R_21695334_SNP [dm6]	G	C	1.155e^-4	0.831	INTRON CG31176
2L	7914184	2L_7914184_DEL [dm3] 2L_7914184_DEL [dm6]	AAA	A	1.168e^-4	0.831	INTRON Snoo
3L	13890570	3L_13890570_SNP [dm3] 3L_13897470_SNP [dm6]	A	T	1.170e^-4	0.831	INTRON dysc
2L	12052815	2L_12052815_SNP [dm3] 2L_12052815_SNP [dm6]	G	A	1.178e^-4	0.831	SYNONYMOUS_CODING JhI-21 DOWNSTREAM CG14945
X	19098631	X_19098631_SNP [dm3] X_19204598_SNP [dm6]	G	A	1.178e^-4	0.831	NON_SYNONYMOUS_CODING Ulp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18714658	2R_18714658_SNP [dm3] 2R_22827135_SNP [dm6]	A	T	1.179e^-4	0.831	INTRON CG42284 & 1 other
2R	11322332	2R_11322332_SNP [dm3] 2R_15434827_SNP [dm6]	G	T	1.182e^-4	0.831	INTRON CG43729	TF binding site mE1_TFBS_chinmo
3L	6062185	3L_6062185_SNP [dm3] 3L_6069085_SNP [dm6]	A	G	1.185e^-4	0.831	INTRON CG42269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	84674	X_84674_SNP [dm3] X_187670_SNP [dm6]	T	A	1.194e^-4	0.831	INTRON tyn
3R	26492603	3R_26492603_SNP [dm3] 3R_30666881_SNP [dm6]	A	G	1.198e^-4	0.831	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	19526210	2L_19526210_SNP [dm3] 2L_19526210_SNP [dm6]	C	T	1.215e^-4	0.831	UPSTREAM CG10137 DOWNSTREAM CG10132 & 1 other INTRON CG10166	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11967672	2L_11967672_SNP [dm3] 2L_11967672_SNP [dm6]	A	T	1.219e^-4	0.831	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
X	18849271	X_18849271_SNP [dm3] X_18955238_SNP [dm6]	A	G	1.220e^-4	0.831	INTRON CG43759
2R	14793356	2R_14793356_SNP [dm3] 2R_18905851_SNP [dm6]	A	C	1.221e^-4	0.831	INTRON sano
2R	10668214	2R_10668214_SNP [dm3] 2R_14780709_SNP [dm6]	C	G	1.222e^-4	0.831	INTRON kn
2L	1973786	2L_1973786_SNP [dm3] 2L_1973786_SNP [dm6]	T	C	1.239e^-4	0.831	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19939400	2R_19939400_SNP [dm3] 2R_24051877_SNP [dm6]	C	T	1.246e^-4	0.831	SYNONYMOUS_CODING sei
2L	17092529	2L_17092529_SNP [dm3] 2L_17092529_SNP [dm6]	A	G	1.249e^-4	0.831	INTERGENIC
X	17150910	X_17150910_SNP [dm3] X_17256877_SNP [dm6]	T	C	1.254e^-4	0.831	INTRON f
2L	11423340	2L_11423340_INS [dm3] 2L_11423340_INS [dm6]	A	ACA	1.261e^-4	0.831	INTERGENIC
2R	8857638	2R_8857638_SNP [dm3] 2R_12970133_SNP [dm6]	C	T	1.270e^-4	0.831	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	25556217	3R_25556217_SNP [dm3] 3R_29730495_SNP [dm6]	T	C	1.274e^-4	0.831	SYNONYMOUS_CODING Kul	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15014825	3L_15014825_SNP [dm3] 3L_15021725_SNP [dm6]	G	T	1.277e^-4	0.831	INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	18474169	X_18474169_SNP [dm3] X_18580136_SNP [dm6]	C	G	1.292e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_Kr
X	8697684	X_8697684_SNP [dm3] X_8803651_SNP [dm6]	T	A	1.297e^-4	0.831	INTRON Lim1
2L	15276785	2L_15276785_SNP [dm3] 2L_15276785_SNP [dm6]	T	G	1.298e^-4	0.831	INTERGENIC
X	19574618	X_19574618_SNP [dm3] X_19680585_SNP [dm6]	C	A	1.304e^-4	0.831	INTRON dome	regulatory region REDfly_CRMs
3L	11001033	3L_11001033_DEL [dm3] 3L_11007933_DEL [dm6]	GATCTG	G	1.306e^-4	0.831	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2311341	2L_2311341_SNP [dm3] 2L_2311341_SNP [dm6]	T	G	1.309e^-4	0.831	UPSTREAM eys INTRON CG9967	TF binding site mE1_TFBS_Trl
3L	9793521	3L_9793521_SNP [dm3] 3L_9800421_SNP [dm6]	A	T	1.316e^-4	0.831	UTR_3_PRIME Ilp2 DOWNSTREAM Ilp3 INTRON CG32052
2L	12416774	2L_12416774_DEL [dm3] 2L_12416774_DEL [dm6]	ACTAAGTA	A	1.319e^-4	0.831	INTRON vir-1
2L	12668858	2L_12668858_SNP [dm3] 2L_12668858_SNP [dm6]	T	C	1.326e^-4	0.831	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6440770	3R_6440770_SNP [dm3] 3R_10615048_SNP [dm6]	T	G	1.332e^-4	0.831	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17521151	3R_17521151_SNP [dm3] 3R_21695429_SNP [dm6]	C	T	1.332e^-4	0.831	INTRON CG31176
2L	21943965	2L_21943965_SNP [dm3] 2L_21943965_SNP [dm6]	G	A	1.333e^-4	0.831	INTERGENIC
3L	8523238	3L_8523238_SNP [dm3] 3L_8530138_SNP [dm6]	T	G	1.335e^-4	0.831	INTRON foi
2L	634207	2L_634207_SNP [dm3] 2L_634207_SNP [dm6]	T	A	1.345e^-4	0.831	INTERGENIC	transposable element FlyBase
3R	23083416	3R_23083416_SNP [dm3] 3R_27257694_SNP [dm6]	T	A	1.348e^-4	0.831	INTRON woc	TF binding site mE1_TFBS_cad
3L	8874455	3L_8874455_SNP [dm3] 3L_8881355_SNP [dm6]	C	T	1.355e^-4	0.831	INTRON dally
2R	12371019	2R_12371019_SNP [dm3] 2R_16483514_SNP [dm6]	T	C	1.358e^-4	0.831	INTERGENIC
3L	7858896	3L_7858896_SNP [dm3] 3L_7865796_SNP [dm6]	A	T	1.360e^-4	0.831	INTRON Pdp1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	745357	X_745357_SNP [dm3] X_851324_SNP [dm6]	C	A	1.365e^-4	0.831	INTRON CG43867
2L	9038476	2L_9038476_SNP [dm3] 2L_9038476_SNP [dm6]	G	A	1.372e^-4	0.831	INTERGENIC
3R	8075254	3R_8075254_SNP [dm3] 3R_12249532_SNP [dm6]	T	C	1.376e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	5147476	3L_5147476_SNP [dm3] 3L_5154376_SNP [dm6]	T	C	1.379e^-4	0.831	SYNONYMOUS_CODING Srp54k
2L	11967608	2L_11967608_SNP [dm3] 2L_11967608_SNP [dm6]	T	A	1.383e^-4	0.831	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	19877504	3R_19877504_SNP [dm3] 3R_24051782_SNP [dm6]	C	T	1.386e^-4	0.831	START_GAINED CG5991 UTR_5_PRIME CG5991 UPSTREAM Atg6 INTRON CG5991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	18371722	3L_18371722_SNP [dm3] 3L_18378622_SNP [dm6]	G	T	1.393e^-4	0.831	INTERGENIC
3L	1549532	3L_1549532_SNP [dm3] 3L_1549532_SNP [dm6]	G	C	1.395e^-4	0.831	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	13388597	3L_13388597_SNP [dm3] 3L_13395497_SNP [dm6]	C	T	1.401e^-4	0.831	DOWNSTREAM sens INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8716314	3L_8716314_SNP [dm3] 3L_8723214_SNP [dm6]	G	A	1.406e^-4	0.831	SYNONYMOUS_CODING CG6511	TF binding site mE1_TFBS_sens
3L	12640382	3L_12640382_SNP [dm3] 3L_12647282_SNP [dm6]	G	A	1.409e^-4	0.831	EXON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19412116	2R_19412116_SNP [dm3] 2R_23524593_SNP [dm6]	C	A	1.411e^-4	0.831	NON_SYNONYMOUS_CODING mi UPSTREAM RabX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8150388	X_8150388_SNP [dm3] X_8256355_SNP [dm6]	T	G	1.412e^-4	0.831	INTRON CG1632
X	11686328	X_11686328_SNP [dm3] X_11792295_SNP [dm6]	A	T	1.421e^-4	0.831	UPSTREAM CkIIbeta & 1 other DOWNSTREAM Karl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16811407	2L_16811407_SNP [dm3] 2L_16811407_SNP [dm6]	T	C	1.421e^-4	0.831	INTRON CG13280 & 1 other
3L	4764158	3L_4764158_SNP [dm3] 3L_4764158_SNP [dm6]	A	G	1.423e^-4	0.831	INTRON RhoGEF64C
2L	3846174	2L_3846174_SNP [dm3] 2L_3846174_SNP [dm6]	C	G	1.438e^-4	0.831	UPSTREAM CR44983 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6525673	2L_6525673_SNP [dm3] 2L_6525673_SNP [dm6]	C	A	1.453e^-4	0.831	SYNONYMOUS_CODING CG31637	TF binding site mE1_TFBS_sens
2R	9236152	2R_9236152_SNP [dm3] 2R_13348647_SNP [dm6]	G	C	1.454e^-4	0.831	INTRON CR44206
3L	11336156	3L_11336156_SNP [dm3] 3L_11343056_SNP [dm6]	T	C	1.462e^-4	0.831	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	10237622	3R_10237622_SNP [dm3] 3R_14411900_SNP [dm6]	C	T	1.468e^-4	0.831	INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8717274	3L_8717274_SNP [dm3] 3L_8724174_SNP [dm6]	G	A	1.471e^-4	0.831	INTRON CG6511
3L	9793516	3L_9793516_SNP [dm3] 3L_9800416_SNP [dm6]	G	T	1.472e^-4	0.831	UTR_3_PRIME Ilp2 DOWNSTREAM Ilp3 INTRON CG32052
X	186110	X_186110_SNP [dm3] X_292077_SNP [dm6]	A	C	1.473e^-4	0.831	INTRON CG3777 & 1 other
2L	12413317	2L_12413317_SNP [dm3] 2L_12413317_SNP [dm6]	G	A	1.477e^-4	0.831	INTRON vir-1
3R	17557538	3R_17557538_DEL [dm3] 3R_21731816_DEL [dm6]	AA	A	1.478e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1973910	2L_1973910_SNP [dm3] 2L_1973910_SNP [dm6]	G	A	1.481e^-4	0.831	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9233549	2R_9233549_SNP [dm3] 2R_13346044_SNP [dm6]	A	C	1.492e^-4	0.831	INTRON CR44206
2L	9183914	2L_9183914_DEL [dm3] 2L_9183914_DEL [dm6]	ATACGCCCTACTA...	A	1.492e^-4	0.831	INTRON tai
2L	1973806	2L_1973806_SNP [dm3] 2L_1973806_SNP [dm6]	A	C	1.495e^-4	0.831	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	14707329	3L_14707329_SNP [dm3] 3L_14714229_SNP [dm6]	C	T	1.496e^-4	0.831	INTRON ome
2R	14169319	2R_14169319_SNP [dm3] 2R_18281814_SNP [dm6]	C	T	1.500e^-4	0.831	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12371032	2R_12371032_SNP [dm3] 2R_16483527_SNP [dm6]	C	T	1.502e^-4	0.831	INTERGENIC
2L	8255998	2L_8255998_SNP [dm3] 2L_8255998_SNP [dm6]	C	T	1.530e^-4	0.831	INTRON CG8086
2R	14793337	2R_14793337_SNP [dm3] 2R_18905832_SNP [dm6]	A	G	1.536e^-4	0.831	INTRON sano
2R	15120954	2R_15120954_SNP [dm3] 2R_19233449_SNP [dm6]	C	T	1.537e^-4	0.831	INTRON cora
2L	1833177	2L_1833177_SNP [dm3] 2L_1833177_SNP [dm6]	A	G	1.556e^-4	0.831	UPSTREAM c-cup INTERGENIC
2L	3369723	2L_3369723_SNP [dm3] 2L_3369723_SNP [dm6]	C	A	1.558e^-4	0.831	UPSTREAM CG34394 INTRON CG34394
2L	4456677	2L_4456677_SNP [dm3] 2L_4456677_SNP [dm6]	C	G	1.560e^-4	0.831	DOWNSTREAM RpL27A & 1 other INTRON Gs1l	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	16945903	X_16945903_SNP [dm3] X_17051870_SNP [dm6]	T	C	1.562e^-4	0.831	INTRON CG45002
3L	5514752	3L_5514752_SNP [dm3] 3L_5521652_SNP [dm6]	T	G	1.563e^-4	0.831	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15420925	X_15420925_SNP [dm3] X_15526892_SNP [dm6]	A	T	1.571e^-4	0.831	INTRON Ac13E
2L	21245597	2L_21245597_SNP [dm3] 2L_21245597_SNP [dm6]	T	C	1.579e^-4	0.831	INTRON Hr39	TF binding site BDTNP1_TFBS_twi
2L	10620950	2L_10620950_SNP [dm3] 2L_10620950_SNP [dm6]	A	G	1.580e^-4	0.831	INTRON Trim9
X	7917046	X_7917046_SNP [dm3] X_8023013_SNP [dm6]	T	C	1.580e^-4	0.831	INTRON Tbh	TF binding site mE1_TFBS_inv
X	10731656	X_10731656_SNP [dm3] X_10837623_SNP [dm6]	A	G	1.587e^-4	0.831	INTRON sbr	TF binding site mE1_TFBS_HSA
X	18849276	X_18849276_DEL [dm3] X_18955243_DEL [dm6]	TAATA	T	1.589e^-4	0.831	INTRON CG43759
2R	7214954	2R_7214954_SNP [dm3] 2R_11327449_SNP [dm6]	C	G	1.606e^-4	0.831	INTRON sha
3L	4777058	3L_4777058_SNP [dm3] 3L_4777058_SNP [dm6]	A	G	1.610e^-4	0.831	INTRON RhoGEF64C
3R	21009081	3R_21009081_SNP [dm3] 3R_25183359_SNP [dm6]	T	G	1.611e^-4	0.831	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	55249	X_55249_SNP [dm3] X_158862_SNP [dm6]	C	T	1.612e^-4	0.831	INTRON tyn	transposable element FlyBase
X	17150911	X_17150911_SNP [dm3] X_17256878_SNP [dm6]	C	T	1.618e^-4	0.831	INTRON f
2L	12416803	2L_12416803_SNP [dm3] 2L_12416803_SNP [dm6]	A	G	1.623e^-4	0.831	INTRON vir-1
2R	16648920	2R_16648920_SNP [dm3] 2R_20761415_SNP [dm6]	A	G	1.634e^-4	0.831	INTERGENIC
2L	10291845	2L_10291845_DEL [dm3] 2L_10291845_DEL [dm6]	AA	A	1.638e^-4	0.831	DOWNSTREAM Hand INTRON CG5604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	13030806	X_13030806_SNP [dm3] X_13136773_SNP [dm6]	T	C	1.640e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	745379	X_745379_SNP [dm3] X_851346_SNP [dm6]	G	A	1.641e^-4	0.831	INTRON CG43867
2L	10491787	2L_10491787_SNP [dm3] 2L_10491787_SNP [dm6]	C	G	1.644e^-4	0.831	UPSTREAM CG13144 DOWNSTREAM Myo31DF INTERGENIC
3L	7220489	3L_7220489_SNP [dm3] 3L_7227389_SNP [dm6]	T	C	1.645e^-4	0.831	INTERGENIC
3L	5514248	3L_5514248_SNP [dm3] 3L_5521148_SNP [dm6]	G	T	1.646e^-4	0.831	INTRON Lkr
3L	22813215	3L_22813215_SNP [dm3] 3L_22820115_SNP [dm6]	A	T	1.649e^-4	0.831	INTRON jim	TF binding site BDTNP1_TFBS_dl
3R	14179465	3R_14179465_SNP [dm3] 3R_18353743_SNP [dm6]	C	T	1.653e^-4	0.831	SYNONYMOUS_CODING CG15803	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19021279	2R_19021279_SNP [dm3] 2R_23133756_SNP [dm6]	G	T	1.655e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	2188449	3L_2188449_SNP [dm3] 3L_2188449_SNP [dm6]	A	C	1.656e^-4	0.831	DOWNSTREAM CG13810 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	4649657	X_4649657_SNP [dm3] X_4755624_SNP [dm6]	G	A	1.657e^-4	0.831	INTERGENIC
3L	508050	3L_508050_SNP [dm3] 3L_508050_SNP [dm6]	A	T	1.662e^-4	0.831	SYNONYMOUS_CODING klar
2R	7617246	2R_7617246_SNP [dm3] 2R_11729741_SNP [dm6]	T	C	1.663e^-4	0.831	INTERGENIC
3R	6432764	3R_6432764_SNP [dm3] 3R_10607042_SNP [dm6]	C	G	1.668e^-4	0.831	INTRON hth
2L	4581720	2L_4581720_SNP [dm3] 2L_4581720_SNP [dm6]	G	C	1.671e^-4	0.831	DOWNSTREAM CR43716 INTRON dp
X	12414494	X_12414494_SNP [dm3] X_12520461_SNP [dm6]	G	A	1.675e^-4	0.831	SYNONYMOUS_CODING CG43921	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4866866	3L_4866866_SNP [dm3] 3L_4866866_SNP [dm6]	G	A	1.675e^-4	0.831	NON_SYNONYMOUS_CODING CG17150
X	3921538	X_3921538_SNP [dm3] X_4027505_SNP [dm6]	T	A	1.682e^-4	0.831	INTERGENIC
2L	14459054	2L_14459054_SNP [dm3] 2L_14459054_SNP [dm6]	A	T	1.684e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	12630275	3L_12630275_SNP [dm3] 3L_12637175_SNP [dm6]	A	C	1.687e^-4	0.831	INTRON CR32111
3L	4509940	3L_4509940_SNP [dm3] 3L_4509940_SNP [dm6]	G	T	1.695e^-4	0.831	DOWNSTREAM Tie INTERGENIC
3R	19062830	3R_19062830_SNP [dm3] 3R_23237108_SNP [dm6]	C	T	1.706e^-4	0.831	INTRON CG4467
2R	17760339	2R_17760339_SNP [dm3] 2R_21872834_SNP [dm6]	A	G	1.710e^-4	0.831	INTRON Fili	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	4764174	3L_4764174_SNP [dm3] 3L_4764174_SNP [dm6]	G	T	1.716e^-4	0.831	INTRON RhoGEF64C
3L	4764183	3L_4764183_INS [dm3] 3L_4764183_INS [dm6]	G	GTG	1.716e^-4	0.831	INTRON RhoGEF64C
3L	12630281	3L_12630281_SNP [dm3] 3L_12637181_SNP [dm6]	C	T	1.716e^-4	0.831	INTRON CR32111
2R	16985793	2R_16985793_SNP [dm3] 2R_21098288_SNP [dm6]	G	C	1.723e^-4	0.831	SYNONYMOUS_CODING CG34396 UPSTREAM CG4038 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19062844	3R_19062844_SNP [dm3] 3R_23237122_SNP [dm6]	C	G	1.725e^-4	0.831	INTRON CG4467
X	15318985	X_15318985_SNP [dm3] X_15424952_SNP [dm6]	C	T	1.726e^-4	0.831	INTRON Cngl
3R	12197983	3R_12197983_SNP [dm3] 3R_16372261_SNP [dm6]	G	T	1.735e^-4	0.831	EXON CR45193	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	4805558	3R_4805558_SNP [dm3] 3R_8979836_SNP [dm6]	T	C	1.742e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	16649038	2R_16649038_SNP [dm3] 2R_20761533_SNP [dm6]	C	T	1.744e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	4666281	X_4666281_SNP [dm3] X_4772248_SNP [dm6]	G	A	1.750e^-4	0.831	UPSTREAM Bteb2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19892840	2R_19892840_SNP [dm3] 2R_24005317_SNP [dm6]	G	T	1.751e^-4	0.831	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5193222	3R_5193222_SNP [dm3] 3R_9367500_SNP [dm6]	A	C	1.762e^-4	0.831	NON_SYNONYMOUS_CODING CG8129 DOWNSTREAM FER
X	20707654	X_20707654_SNP [dm3] X_20836627_SNP [dm6]	A	G	1.764e^-4	0.831	INTRON shakB
3L	14054803	3L_14054803_SNP [dm3] 3L_14061703_SNP [dm6]	C	T	1.766e^-4	0.831	INTRON CG32138
3L	9685084	3L_9685084_SNP [dm3] 3L_9691984_SNP [dm6]	G	C	1.770e^-4	0.831	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	4584500	2L_4584500_SNP [dm3] 2L_4584500_SNP [dm6]	G	A	1.772e^-4	0.831	INTRON dp
3L	9685263	3L_9685263_SNP [dm3] 3L_9692163_SNP [dm6]	A	T	1.778e^-4	0.831	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	13575468	3L_13575468_SNP [dm3] 3L_13582368_SNP [dm6]	C	A	1.779e^-4	0.831	INTRON bru-3
2L	3373962	2L_3373962_SNP [dm3] 2L_3373962_SNP [dm6]	T	C	1.782e^-4	0.831	UPSTREAM CG34394 INTRON CG15412	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21239680	2L_21239680_SNP [dm3] 2L_21239680_SNP [dm6]	G	A	1.790e^-4	0.831	INTRON Hr39	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14913752	2R_14913752_SNP [dm3] 2R_19026247_SNP [dm6]	G	C	1.795e^-4	0.831	INTRON 5-HT1B
3R	24922530	3R_24922530_SNP [dm3] 3R_29096808_SNP [dm6]	T	A	1.799e^-4	0.831	DOWNSTREAM CR45030 INTRON CG11873
3L	10637198	3L_10637198_SNP [dm3] 3L_10644098_SNP [dm6]	C	G	1.801e^-4	0.831	NON_SYNONYMOUS_CODING CG14153 INTRON CG32066
3L	11336519	3L_11336519_SNP [dm3] 3L_11343419_SNP [dm6]	T	C	1.807e^-4	0.831	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	9030994	2L_9030994_SNP [dm3] 2L_9030994_SNP [dm6]	A	T	1.810e^-4	0.831	INTRON CG9582 & 1 other
X	5965966	X_5965966_SNP [dm3] X_6071933_SNP [dm6]	T	G	1.814e^-4	0.831	INTRON Tsp5D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4570573	2L_4570573_SNP [dm3] 2L_4570573_SNP [dm6]	C	T	1.815e^-4	0.831	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2336901	3L_2336901_SNP [dm3] 3L_2336901_SNP [dm6]	A	T	1.823e^-4	0.831	INTRON MsR1
X	11688050	X_11688050_SNP [dm3] X_11794017_SNP [dm6]	G	A	1.823e^-4	0.831	SYNONYMOUS_CODING CkIIbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_sens
2L	4988949	2L_4988949_SNP [dm3] 2L_4988949_SNP [dm6]	C	A	1.829e^-4	0.831	INTRON CG34126
2R	12371053	2R_12371053_SNP [dm3] 2R_16483548_SNP [dm6]	A	C	1.837e^-4	0.831	INTERGENIC
2L	4572429	2L_4572429_SNP [dm3] 2L_4572429_SNP [dm6]	T	G	1.843e^-4	0.831	INTRON dp	TF binding site mE1_TFBS_cad
3R	24922520	3R_24922520_SNP [dm3] 3R_29096798_SNP [dm6]	G	C	1.845e^-4	0.831	DOWNSTREAM CR45030 INTRON CG11873
2R	19003505	2R_19003505_SNP [dm3] 2R_23115982_SNP [dm6]	G	A	1.850e^-4	0.831	INTERGENIC
3L	5514249	3L_5514249_SNP [dm3] 3L_5521149_SNP [dm6]	A	C	1.854e^-4	0.831	INTRON Lkr
X	15431405	X_15431405_SNP [dm3] X_15537372_SNP [dm6]	G	A	1.859e^-4	0.831	INTRON Ac13E
2L	19526465	2L_19526465_SNP [dm3] 2L_19526465_SNP [dm6]	T	C	1.864e^-4	0.831	UPSTREAM CG10137 & 1 other DOWNSTREAM CG10165 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	8735672	X_8735672_SNP [dm3] X_8841639_SNP [dm6]	G	T	1.880e^-4	0.831	INTRON CG12075
2L	19604820	2L_19604820_SNP [dm3] 2L_19604820_SNP [dm6]	T	A	1.880e^-4	0.831	INTRON Lar & 1 other
2R	3842195	2R_3842195_SNP [dm3] 2R_7954690_SNP [dm6]	G	C	1.885e^-4	0.831	UPSTREAM CG14764 INTRON CG14764
X	6778085	X_6778085_SNP [dm3] X_6884052_SNP [dm6]	A	T	1.898e^-4	0.831	INTERGENIC
X	6778096	X_6778096_SNP [dm3] X_6884063_SNP [dm6]	C	G	1.898e^-4	0.831	INTERGENIC
2R	15430216	2R_15430216_SNP [dm3] 2R_19542711_SNP [dm6]	G	T	1.906e^-4	0.831	INTRON sm	TF binding site mE1_TFBS_inv
3R	23083410	3R_23083410_SNP [dm3] 3R_27257688_SNP [dm6]	G	C	1.909e^-4	0.831	INTRON woc	TF binding site mE1_TFBS_cad
2L	21197345	2L_21197345_SNP [dm3] 2L_21197345_SNP [dm6]	T	A	1.910e^-4	0.831	INTRON Ret	TF binding site mE1_TFBS_HSA
3L	7003763	3L_7003763_SNP [dm3] 3L_7010663_SNP [dm6]	C	T	1.920e^-4	0.831	INTRON Mp
2L	4029492	2L_4029492_SNP [dm3] 2L_4029492_SNP [dm6]	G	A	1.924e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18714867	2R_18714867_SNP [dm3] 2R_22827344_SNP [dm6]	T	A	1.926e^-4	0.831	INTRON CG30274 & 1 other
3L	9735690	3L_9735690_SNP [dm3] 3L_9742590_SNP [dm6]	C	G	1.932e^-4	0.831	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16892335	3L_16892335_SNP [dm3] 3L_16899235_SNP [dm6]	C	T	1.933e^-4	0.831	UPSTREAM Lmpt INTRON Lmpt
2L	12848454	2L_12848454_SNP [dm3] 2L_12848454_SNP [dm6]	T	A	1.938e^-4	0.831	INTERGENIC
3R	19062846	3R_19062846_SNP [dm3] 3R_23237124_SNP [dm6]	A	G	1.938e^-4	0.831	INTRON CG4467
X	4360984	X_4360984_SNP [dm3] X_4466951_SNP [dm6]	A	G	1.939e^-4	0.831	INTRON bi & 1 other
2R	18277497	2R_18277497_SNP [dm3] 2R_22389992_SNP [dm6]	C	T	1.940e^-4	0.831	INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7817626	2R_7817626_SNP [dm3] 2R_11930121_SNP [dm6]	G	A	1.941e^-4	0.831	UPSTREAM CR44312 INTERGENIC
3R	27289496	3R_27289496_SNP [dm3] 3R_31463774_SNP [dm6]	G	A	1.949e^-4	0.831	UPSTREAM CG11334 INTRON CG11333	TF binding site mE1_TFBS_sens
3L	2336903	3L_2336903_SNP [dm3] 3L_2336903_SNP [dm6]	A	G	1.957e^-4	0.831	INTRON MsR1
3L	2336905	3L_2336905_SNP [dm3] 3L_2336905_SNP [dm6]	T	A	1.957e^-4	0.831	INTRON MsR1
2R	19141958	2R_19141958_SNP [dm3] 2R_23254435_SNP [dm6]	T	A	1.968e^-4	0.831	INTERGENIC
3L	2186124	3L_2186124_SNP [dm3] 3L_2186124_SNP [dm6]	C	G	1.973e^-4	0.831	SPLICE_SITE_REGION CG13810 SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_twi
3L	13890086	3L_13890086_SNP [dm3] 3L_13896986_SNP [dm6]	A	G	1.981e^-4	0.831	INTRON dysc
2L	21199973	2L_21199973_SNP [dm3] 2L_21199973_SNP [dm6]	G	A	1.981e^-4	0.831	INTRON CG31624
X	11896988	X_11896988_SNP [dm3] X_12002955_SNP [dm6]	C	T	1.993e^-4	0.831	UPSTREAM fw INTRON fw
3R	26492611	3R_26492611_INS [dm3] 3R_30666889_INS [dm6]	G	GAAT	1.997e^-4	0.831	DOWNSTREAM CR45191 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	9102363	3R_9102363_SNP [dm3] 3R_13276641_SNP [dm6]	T	A	2.008e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	29101	X_29101_SNP [dm3] X_132714_SNP [dm6]	C	T	2.009e^-4	0.831	UPSTREAM mir-4915 INTRON RhoGAP1A
2L	19526558	2L_19526558_SNP [dm3] 2L_19526558_SNP [dm6]	T	G	2.012e^-4	0.831	UPSTREAM CG10137 & 1 other DOWNSTREAM CG10165 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	13895674	2L_13895674_SNP [dm3] 2L_13895674_SNP [dm6]	A	C	2.013e^-4	0.831	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
3L	7468569	3L_7468569_DEL [dm3] 3L_7475469_DEL [dm6]	CATTTTTAT	C	2.019e^-4	0.831	UPSTREAM CG43292 INTERGENIC
X	18474163	X_18474163_DEL [dm3] X_18580130_DEL [dm6]	AAA	A	2.023e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	14594907	3L_14594907_SNP [dm3] 3L_14601807_SNP [dm6]	A	C	2.032e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Kr
2R	12370957	2R_12370957_SNP [dm3] 2R_16483452_SNP [dm6]	C	A	2.038e^-4	0.831	INTERGENIC
2L	1124852	2L_1124852_SNP [dm3] 2L_1124852_SNP [dm6]	G	A	2.048e^-4	0.831	INTRON Pino
2R	18313258	2R_18313258_INS [dm3] 2R_22425753_INS [dm6]	A	AAA	2.049e^-4	0.831	UTR_3_PRIME CG10344 DOWNSTREAM rad50
2R	17760345	2R_17760345_SNP [dm3] 2R_21872840_SNP [dm6]	T	A	2.049e^-4	0.831	INTRON Fili	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens
3L	15015281	3L_15015281_SNP [dm3] 3L_15022181_SNP [dm6]	T	G	2.054e^-4	0.831	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl
X	11685322	X_11685322_SNP [dm3] X_11791289_SNP [dm6]	A	T	2.058e^-4	0.831	INTRON Karl & 1 other
X	11685333	X_11685333_SNP [dm3] X_11791300_SNP [dm6]	C	T	2.058e^-4	0.831	INTRON Karl & 1 other
2R	18856198	2R_18856198_SNP [dm3] 2R_22968675_SNP [dm6]	G	T	2.058e^-4	0.831	INTERGENIC
3L	20456907	3L_20456907_SNP [dm3] 3L_20463807_SNP [dm6]	A	G	2.065e^-4	0.831	DOWNSTREAM CG42764 INTRON CG5195
2L	8910771	2L_8910771_SNP [dm3] 2L_8910771_SNP [dm6]	T	C	2.065e^-4	0.831	INTRON CG34398
3L	17665322	3L_17665322_SNP [dm3] 3L_17672222_SNP [dm6]	T	C	2.069e^-4	0.831	INTRON CG34251
3R	10001389	3R_10001389_SNP [dm3] 3R_14175667_SNP [dm6]	A	C	2.072e^-4	0.831	UTR_3_PRIME Dop1R1
3L	10446321	3L_10446321_SNP [dm3] 3L_10453221_SNP [dm6]	G	A	2.073e^-4	0.831	INTERGENIC
2R	8857509	2R_8857509_SNP [dm3] 2R_12970004_SNP [dm6]	A	G	2.075e^-4	0.831	SYNONYMOUS_CODING Psc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	19526470	2L_19526470_SNP [dm3] 2L_19526470_SNP [dm6]	T	A	2.077e^-4	0.831	UPSTREAM CG10137 & 1 other DOWNSTREAM CG10165 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8052496	2L_8052496_SNP [dm3] 2L_8052496_SNP [dm6]	C	T	2.077e^-4	0.831	SYNONYMOUS_CODING CG7466
2L	10491774	2L_10491774_SNP [dm3] 2L_10491774_SNP [dm6]	A	T	2.077e^-4	0.831	UPSTREAM CG13144 DOWNSTREAM Myo31DF INTERGENIC
2L	7244285	2L_7244285_SNP [dm3] 2L_7244285_SNP [dm6]	T	A	2.081e^-4	0.831	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4178901	2R_4178901_SNP [dm3] 2R_8291396_SNP [dm6]	A	C	2.082e^-4	0.831	INTERGENIC
3R	5962131	3R_5962131_SNP [dm3] 3R_10136409_SNP [dm6]	C	T	2.087e^-4	0.831	INTRON tws
2R	18780203	2R_18780203_SNP [dm3] 2R_22892680_SNP [dm6]	C	T	2.089e^-4	0.831	INTRON MED23	TF binding site mE1_TFBS_cad
2L	21240817	2L_21240817_SNP [dm3] 2L_21240817_SNP [dm6]	C	T	2.097e^-4	0.831	INTRON Hr39
3L	19129676	3L_19129676_SNP [dm3] 3L_19136576_SNP [dm6]	G	A	2.101e^-4	0.831	UTR_5_PRIME CG14082
3L	12958663	3L_12958663_SNP [dm3] 3L_12965563_SNP [dm6]	A	G	2.106e^-4	0.831	SYNONYMOUS_CODING Or69a INTRON Or69a
X	3463375	X_3463375_SNP [dm3] X_3569342_SNP [dm6]	G	T	2.109e^-4	0.831	UPSTREAM ppk8 INTRON ppk8 & 1 other
3L	1279120	3L_1279120_SNP [dm3] 3L_1279120_SNP [dm6]	A	C	2.109e^-4	0.831	INTRON CG32333
3R	7990189	3R_7990189_SNP [dm3] 3R_12164467_SNP [dm6]	T	A	2.115e^-4	0.831	NON_SYNONYMOUS_CODING Cpn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1523580	3L_1523580_SNP [dm3] 3L_1523580_SNP [dm6]	C	T	2.119e^-4	0.831	SYNONYMOUS_CODING CG12090 DOWNSTREAM Psa
X	7160588	X_7160588_DEL [dm3] X_7266555_DEL [dm6]	GC	G	2.120e^-4	0.831	UPSTREAM CG1958 INTRON CR44357	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	9284926	3L_9284926_SNP [dm3] 3L_9291826_SNP [dm6]	C	T	2.120e^-4	0.831	INTERGENIC
3L	14994374	3L_14994374_SNP [dm3] 3L_15001274_SNP [dm6]	A	G	2.122e^-4	0.831	UTR_3_PRIME Prosbeta2 & 1 other	TF binding site mE1_TFBS_inv
2L	2001465	2L_2001465_SNP [dm3] 2L_2001465_SNP [dm6]	C	T	2.128e^-4	0.831	SYNONYMOUS_CODING CG33543 EXON CR43464
X	985397	X_985397_INS [dm3] X_1091364_INS [dm6]	A	AAACGCATTGA...	2.130e^-4	0.831	INTRON CG3655
3R	19287488	3R_19287488_SNP [dm3] 3R_23461766_SNP [dm6]	A	G	2.131e^-4	0.831	INTRON CG4374
3L	1550556	3L_1550556_SNP [dm3] 3L_1550556_SNP [dm6]	C	A	2.133e^-4	0.831	INTRON Cct1
2R	18856184	2R_18856184_SNP [dm3] 2R_22968661_SNP [dm6]	A	G	2.137e^-4	0.831	INTERGENIC
2L	21197628	2L_21197628_SNP [dm3] 2L_21197628_SNP [dm6]	T	A	2.151e^-4	0.831	INTRON Ret
3L	11337697	3L_11337697_SNP [dm3] 3L_11344597_SNP [dm6]	T	A	2.153e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15957793	3L_15957793_SNP [dm3] 3L_15964693_SNP [dm6]	A	T	2.155e^-4	0.831	SYNONYMOUS_CODING l_3_72Ab	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15468074	2R_15468074_SNP [dm3] 2R_19580569_SNP [dm6]	A	G	2.163e^-4	0.831	INTRON sm
2L	1973807	2L_1973807_SNP [dm3] 2L_1973807_SNP [dm6]	C	A	2.171e^-4	0.831	UPSTREAM Der-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	2673315	3L_2673315_SNP [dm3] 3L_2673315_SNP [dm6]	A	G	2.179e^-4	0.831	INTRON Fife
3R	8516414	3R_8516414_SNP [dm3] 3R_12690692_SNP [dm6]	T	G	2.190e^-4	0.831	SYNONYMOUS_CODING Su_fu_	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4988687	2L_4988687_SNP [dm3] 2L_4988687_SNP [dm6]	T	A	2.197e^-4	0.831	INTRON CG34126
3R	25793987	3R_25793987_SNP [dm3] 3R_29968265_SNP [dm6]	A	G	2.198e^-4	0.831	INTRON TkR99D
X	188663	X_188663_SNP [dm3] X_294630_SNP [dm6]	T	G	2.201e^-4	0.831	INTRON CG3777 & 1 other
X	8575763	X_8575763_SNP [dm3] X_8681730_SNP [dm6]	A	G	2.202e^-4	0.831	UTR_5_PRIME CG11284 DOWNSTREAM CG12772	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18716574	2R_18716574_SNP [dm3] 2R_22829051_SNP [dm6]	A	T	2.203e^-4	0.831	UPSTREAM CG30272 DOWNSTREAM CG30274 & 1 other INTERGENIC
3R	17207867	3R_17207867_SNP [dm3] 3R_21382145_SNP [dm6]	G	A	2.229e^-4	0.831	DOWNSTREAM tin INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3843154	2R_3843154_INS [dm3] 2R_7955649_INS [dm6]	A	AA	2.232e^-4	0.831	UTR_5_PRIME CG14764 UPSTREAM CG2906	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16891933	3L_16891933_SNP [dm3] 3L_16898833_SNP [dm6]	C	A	2.237e^-4	0.831	UPSTREAM Lmpt INTRON Lmpt
3L	7468668	3L_7468668_DEL [dm3] 3L_7475568_DEL [dm6]	TTGCTAT	T	2.239e^-4	0.831	UTR_5_PRIME CG43292 UPSTREAM CG43292 INTRAGENIC CG43292 INTERGENIC
2L	16256585	2L_16256585_SNP [dm3] 2L_16256585_SNP [dm6]	C	A	2.240e^-4	0.831	UPSTREAM PRL-1 INTRON PRL-1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
3R	16983689	3R_16983689_SNP [dm3] 3R_21157967_SNP [dm6]	G	A	2.241e^-4	0.831	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
X	144847	X_144847_SNP [dm3] X_250814_SNP [dm6]	A	T	2.244e^-4	0.831	NON_SYNONYMOUS_CODING G9a
3R	7995718	3R_7995718_SNP [dm3] 3R_12169996_SNP [dm6]	C	T	2.245e^-4	0.831	INTERGENIC
X	15356615	X_15356615_DEL [dm3] X_15462582_DEL [dm6]	AG	A	2.251e^-4	0.831	UPSTREAM CG6299 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	4709990	3L_4709990_SNP [dm3] 3L_4709990_SNP [dm6]	C	A	2.251e^-4	0.831	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7997536	3R_7997536_SNP [dm3] 3R_12171814_SNP [dm6]	T	G	2.253e^-4	0.831	INTERGENIC
3L	13889480	3L_13889480_SNP [dm3] 3L_13896380_SNP [dm6]	C	T	2.256e^-4	0.831	INTRON dysc
X	162307	X_162307_SNP [dm3] X_268274_SNP [dm6]	T	G	2.261e^-4	0.831	DOWNSTREAM ewg INTERGENIC
X	153242	X_153242_SNP [dm3] X_259209_SNP [dm6]	C	T	2.267e^-4	0.831	SYNONYMOUS_CODING CG13377 DOWNSTREAM cin EXON CR43906
3R	22359594	3R_22359594_SNP [dm3] 3R_26533872_SNP [dm6]	T	A	2.269e^-4	0.831	INTRON plum	TF binding site BDTNP1_TFBS_dl
3L	12959202	3L_12959202_SNP [dm3] 3L_12966102_SNP [dm6]	C	T	2.272e^-4	0.831	UPSTREAM Or69a INTRON Or69a
2R	5683303	2R_5683303_SNP [dm3] 2R_9795798_SNP [dm6]	C	T	2.284e^-4	0.831	SYNONYMOUS_CODING CG1698 INTRON CG1688	TF binding site mE1_TFBS_cad
3L	4179086	3L_4179086_SNP [dm3] 3L_4179086_SNP [dm6]	G	A	2.288e^-4	0.831	UTR_3_PRIME Teh2 UPSTREAM Teh4 DOWNSTREAM Teh2 INTRON CG18675
2L	13079260	2L_13079260_SNP [dm3] 2L_13079260_SNP [dm6]	A	T	2.294e^-4	0.831	INTERGENIC
2L	21925064	2L_21925064_SNP [dm3] 2L_21925064_SNP [dm6]	C	G	2.296e^-4	0.831	INTERGENIC	transposable element FlyBase
3L	14992125	3L_14992125_SNP [dm3] 3L_14999025_SNP [dm6]	A	T	2.298e^-4	0.831	NON_SYNONYMOUS_CODING mRpL39 UPSTREAM Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7817587	2R_7817587_SNP [dm3] 2R_11930082_SNP [dm6]	A	G	2.300e^-4	0.831	UPSTREAM CR44312 INTERGENIC
X	21009840	X_21009840_SNP [dm3] X_21138813_SNP [dm6]	C	A	2.304e^-4	0.831	SYNONYMOUS_CODING CG34120
2L	12395159	2L_12395159_SNP [dm3] 2L_12395159_SNP [dm6]	A	G	2.306e^-4	0.831	INTRON bru-2
2L	6696669	2L_6696669_SNP [dm3] 2L_6696669_SNP [dm6]	A	G	2.311e^-4	0.831	INTRON Tsp
3L	13895137	3L_13895137_SNP [dm3] 3L_13902037_SNP [dm6]	G	T	2.322e^-4	0.831	UTR_5_PRIME dysc
2R	4277953	2R_4277953_SNP [dm3] 2R_8390448_SNP [dm6]	A	G	2.334e^-4	0.831	SYNONYMOUS_CODING pdm3	TF binding site mE1_TFBS_chinmo
3R	10214041	3R_10214041_SNP [dm3] 3R_14388319_SNP [dm6]	C	A	2.336e^-4	0.831	INTERGENIC
3R	8516498	3R_8516498_SNP [dm3] 3R_12690776_SNP [dm6]	T	C	2.336e^-4	0.831	SYNONYMOUS_CODING Su_fu_ UPSTREAM Arp1 DOWNSTREAM CG31347	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14767569	X_14767569_SNP [dm3] X_14873536_SNP [dm6]	T	A	2.338e^-4	0.831	INTRON Flo2
3L	13890806	3L_13890806_SNP [dm3] 3L_13897706_SNP [dm6]	T	A	2.340e^-4	0.831	INTRON dysc
2L	5052553	2L_5052553_SNP [dm3] 2L_5052553_SNP [dm6]	C	G	2.341e^-4	0.831	UPSTREAM CG14040 INTRON eIF-3p40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14994383	3L_14994383_SNP [dm3] 3L_15001283_SNP [dm6]	A	T	2.347e^-4	0.831	UTR_3_PRIME Prosbeta2 & 1 other	TF binding site mE1_TFBS_inv
3L	13890712	3L_13890712_SNP [dm3] 3L_13897612_SNP [dm6]	C	T	2.348e^-4	0.831	INTRON dysc
2R	6345934	2R_6345934_SNP [dm3] 2R_10458429_SNP [dm6]	A	G	2.359e^-4	0.831	UPSTREAM Galphao & 1 other INTRON Galphao & 1 other
2L	6513123	2L_6513123_SNP [dm3] 2L_6513123_SNP [dm6]	A	G	2.360e^-4	0.831	INTRON CG31637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	16257940	2L_16257940_DEL [dm3] 2L_16257940_DEL [dm6]	TT	T	2.372e^-4	0.831	UPSTREAM EndoGI & 1 other INTRON EndoGI	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	9226526	2R_9226526_SNP [dm3] 2R_13339021_SNP [dm6]	T	G	2.374e^-4	0.831	INTRON CR44206	TF binding site BDTNP1_TFBS_twi
X	21005808	X_21005808_SNP [dm3] X_21134781_SNP [dm6]	C	T	2.383e^-4	0.831	NON_SYNONYMOUS_CODING CG34120
2R	7820680	2R_7820680_INS [dm3] 2R_11933175_INS [dm6]	G	GG	2.383e^-4	0.831	INTERGENIC
2L	12415817	2L_12415817_SNP [dm3] 2L_12415817_SNP [dm6]	A	G	2.387e^-4	0.831	INTRON vir-1
3L	17431587	3L_17431587_SNP [dm3] 3L_17438487_SNP [dm6]	G	A	2.392e^-4	0.831	UPSTREAM CG18265 DOWNSTREAM CG32176 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12828921	2L_12828921_SNP [dm3] 2L_12828921_SNP [dm6]	C	T	2.404e^-4	0.831	INTERGENIC
X	18054544	X_18054544_SNP [dm3] X_18160511_SNP [dm6]	C	T	2.406e^-4	0.831	INTRON Frq1
3L	20278900	3L_20278900_SNP [dm3] 3L_20285800_SNP [dm6]	A	G	2.414e^-4	0.831	INTRON gogo
3R	15010441	3R_15010441_SNP [dm3] 3R_19184719_SNP [dm6]	C	T	2.414e^-4	0.831	INTRON CG31475
X	187232	X_187232_SNP [dm3] X_293199_SNP [dm6]	G	A	2.415e^-4	0.831	INTRON CG3777 & 1 other
3L	760938	3L_760938_SNP [dm3] 3L_760938_SNP [dm6]	T	A	2.417e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb mE1_TFBS_HSA
X	138353	X_138353_SNP [dm3] X_244320_SNP [dm6]	G	C	2.419e^-4	0.831	UTR_3_PRIME CG3038
X	4649418	X_4649418_SNP [dm3] X_4755385_SNP [dm6]	G	A	2.423e^-4	0.831	INTERGENIC
3L	13890802	3L_13890802_SNP [dm3] 3L_13897702_SNP [dm6]	A	T	2.429e^-4	0.831	INTRON dysc
2R	19798039	2R_19798039_SNP [dm3] 2R_23910516_SNP [dm6]	A	G	2.430e^-4	0.831	UPSTREAM kcc INTRON kcc
2L	14122312	2L_14122312_SNP [dm3] 2L_14122312_SNP [dm6]	A	G	2.430e^-4	0.831	INTERGENIC
2L	4029488	2L_4029488_SNP [dm3] 2L_4029488_SNP [dm6]	A	G	2.431e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5484463	2R_5484463_SNP [dm3] 2R_9596958_SNP [dm6]	T	C	2.436e^-4	0.831	INTRON CG30338 & 2 others
2R	5484464	2R_5484464_SNP [dm3] 2R_9596959_SNP [dm6]	G	A	2.436e^-4	0.831	INTRON CG30338 & 2 others
2R	5484484	2R_5484484_SNP [dm3] 2R_9596979_SNP [dm6]	T	G	2.436e^-4	0.831	INTRON CG30338 & 2 others
3L	8523244	3L_8523244_SNP [dm3] 3L_8530144_SNP [dm6]	A	G	2.438e^-4	0.831	INTRON foi
X	8355326	X_8355326_SNP [dm3] X_8461293_SNP [dm6]	T	A	2.439e^-4	0.831	UPSTREAM Es2 & 1 other INTERGENIC
2L	19526410	2L_19526410_SNP [dm3] 2L_19526410_SNP [dm6]	C	T	2.442e^-4	0.831	UPSTREAM CG10137 & 1 other DOWNSTREAM CG10132 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9837883	3L_9837883_SNP [dm3] 3L_9844783_SNP [dm6]	A	G	2.446e^-4	0.831	SYNONYMOUS_CODING RasGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9691050	2R_9691050_SNP [dm3] 2R_13803545_SNP [dm6]	A	G	2.448e^-4	0.831	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17150796	X_17150796_SNP [dm3] X_17256763_SNP [dm6]	T	C	2.459e^-4	0.831	INTRON f
2R	18715479	2R_18715479_SNP [dm3] 2R_22827956_SNP [dm6]	T	C	2.462e^-4	0.831	SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
3L	9034336	3L_9034336_SNP [dm3] 3L_9041236_SNP [dm6]	A	G	2.471e^-4	0.831	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12958681	3L_12958681_SNP [dm3] 3L_12965581_SNP [dm6]	A	G	2.477e^-4	0.831	SYNONYMOUS_CODING Or69a INTRON Or69a
2R	7817729	2R_7817729_SNP [dm3] 2R_11930224_SNP [dm6]	C	T	2.480e^-4	0.831	UPSTREAM CR44312 INTERGENIC
2L	4582340	2L_4582340_SNP [dm3] 2L_4582340_SNP [dm6]	T	G	2.482e^-4	0.831	INTRON dp EXON CR43716
2L	4582289	2L_4582289_SNP [dm3] 2L_4582289_SNP [dm6]	A	T	2.482e^-4	0.831	INTRON dp EXON CR43716
3L	3607111	3L_3607111_SNP [dm3] 3L_3607111_SNP [dm6]	G	A	2.486e^-4	0.831	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12514201	2L_12514201_SNP [dm3] 2L_12514201_SNP [dm6]	T	C	2.495e^-4	0.831	INTRON bun
3L	8534637	3L_8534637_SNP [dm3] 3L_8541537_SNP [dm6]	A	C	2.496e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8429041	2R_8429041_SNP [dm3] 2R_12541536_SNP [dm6]	G	A	2.497e^-4	0.831	INTRON fra	TF binding site mE1_TFBS_cad
X	7170764	X_7170764_SNP [dm3] X_7276731_SNP [dm6]	T	C	2.498e^-4	0.831	INTRON CR44357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9837848	3L_9837848_SNP [dm3] 3L_9844748_SNP [dm6]	A	G	2.499e^-4	0.831	SYNONYMOUS_CODING RasGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1974066	2L_1974066_SNP [dm3] 2L_1974066_SNP [dm6]	C	A	2.500e^-4	0.831	UTR_5_PRIME Der-1 UPSTREAM Der-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14491067	2R_14491067_SNP [dm3] 2R_18603562_SNP [dm6]	T	C	2.501e^-4	0.831	INTRON GEFmeso
2L	6049490	2L_6049490_SNP [dm3] 2L_6049490_SNP [dm6]	A	G	2.503e^-4	0.831	SYNONYMOUS_CODING CG12393 UPSTREAM CG34179 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	22128991	X_22128991_SNP [dm3] X_22727155_SNP [dm6]	C	A	2.506e^-4	0.831	INTRON CR44997	transposable element FlyBase
2R	4307733	2R_4307733_SNP [dm3] 2R_8420228_SNP [dm6]	G	A	2.507e^-4	0.831	UPSTREAM CSN7 INTERGENIC
2R	18277501	2R_18277501_SNP [dm3] 2R_22389996_SNP [dm6]	C	T	2.527e^-4	0.831	INTRON CG13506	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9044066	2L_9044066_SNP [dm3] 2L_9044066_SNP [dm6]	G	A	2.527e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12413258	2L_12413258_SNP [dm3] 2L_12413258_SNP [dm6]	A	G	2.541e^-4	0.831	INTRON vir-1
2R	19900128	2R_19900128_SNP [dm3] 2R_24012605_SNP [dm6]	G	A	2.546e^-4	0.831	SYNONYMOUS_CODING Unc-89 UPSTREAM Unc-89	TF binding site mE1_TFBS_chinmo
3L	7423334	3L_7423334_SNP [dm3] 3L_7430234_SNP [dm6]	A	G	2.551e^-4	0.831	INTRON CG42458
3R	11044749	3R_11044749_SNP [dm3] 3R_15219027_SNP [dm6]	G	A	2.554e^-4	0.831	UPSTREAM CG12241 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	21191929	2L_21191929_SNP [dm3] 2L_21191929_SNP [dm6]	T	G	2.554e^-4	0.831	INTRON Ret
2L	3369446	2L_3369446_SNP [dm3] 2L_3369446_SNP [dm6]	G	A	2.559e^-4	0.831	UPSTREAM CG34394 INTRON CG34394
2L	3154418	2L_3154418_SNP [dm3] 2L_3154418_SNP [dm6]	T	C	2.559e^-4	0.831	INTRON Mad
X	4358562	X_4358562_SNP [dm3] X_4464529_SNP [dm6]	A	T	2.565e^-4	0.831	INTRON bi & 1 other	TF binding site BDTNP1_TFBS_Med
X	2876212	X_2876212_SNP [dm3] X_2982179_SNP [dm6]	A	G	2.568e^-4	0.831	INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12108042	2L_12108042_SNP [dm3] 2L_12108042_SNP [dm6]	C	A	2.569e^-4	0.831	UTR_3_PRIME Rab6 DOWNSTREAM Aats-thr	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	9428682	2L_9428682_SNP [dm3] 2L_9428682_SNP [dm6]	C	G	2.571e^-4	0.831	UTR_3_PRIME CG42847 & 1 other DOWNSTREAM FucTB & 1 other
2L	634193	2L_634193_SNP [dm3] 2L_634193_SNP [dm6]	C	G	2.581e^-4	0.831	INTERGENIC	transposable element FlyBase
2L	9722439	2L_9722439_SNP [dm3] 2L_9722439_SNP [dm6]	G	T	2.582e^-4	0.831	INTRON Nckx30C	TF binding site mE1_TFBS_sens
X	12746676	X_12746676_SNP [dm3] X_12852643_SNP [dm6]	C	G	2.584e^-4	0.831	INTRON Pde9
3R	9768036	3R_9768036_SNP [dm3] 3R_13942314_SNP [dm6]	A	G	2.585e^-4	0.831	UTR_3_PRIME Art9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20832703	2L_20832703_SNP [dm3] 2L_20832703_SNP [dm6]	C	A	2.593e^-4	0.831	NON_SYNONYMOUS_CODING CG31674 DOWNSTREAM Oseg5
3L	10989280	3L_10989280_INS [dm3] 3L_10996180_INS [dm6]	A	AG	2.595e^-4	0.831	INTRON klu
3R	18621771	3R_18621771_SNP [dm3] 3R_22796049_SNP [dm6]	G	T	2.598e^-4	0.831	INTERGENIC
3L	3125913	3L_3125913_SNP [dm3] 3L_3125913_SNP [dm6]	A	G	2.599e^-4	0.831	INTRON prominin-like
2L	10474599	2L_10474599_SNP [dm3] 2L_10474599_SNP [dm6]	C	A	2.607e^-4	0.831	UPSTREAM RluA-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21196831	2L_21196831_DEL [dm3] 2L_21196831_DEL [dm6]	CTG	C	2.608e^-4	0.831	INTRON Ret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11677252	X_11677252_SNP [dm3] X_11783219_SNP [dm6]	T	A	2.613e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11043498	X_11043498_SNP [dm3] X_11149465_SNP [dm6]	C	T	2.616e^-4	0.831	UTR_5_PRIME Lint-1 UPSTREAM Ran	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6358086	2L_6358086_SNP [dm3] 2L_6358086_SNP [dm6]	A	G	2.622e^-4	0.831	SPLICE_SITE_REGION CG9500 DOWNSTREAM CR44777 INTRON CG9500
X	9761760	X_9761760_SNP [dm3] X_9867727_SNP [dm6]	C	T	2.646e^-4	0.831	DOWNSTREAM CG45060 & 1 other INTERGENIC
3L	2411613	3L_2411613_SNP [dm3] 3L_2411613_SNP [dm6]	G	A	2.653e^-4	0.831	UPSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	177056	X_177056_SNP [dm3] X_283023_SNP [dm6]	A	T	2.661e^-4	0.831	DOWNSTREAM CG13375 INTRON CG3777
X	20707716	X_20707716_SNP [dm3] X_20836689_SNP [dm6]	T	A	2.662e^-4	0.831	INTRON shakB
2L	4796184	2L_4796184_SNP [dm3] 2L_4796184_SNP [dm6]	A	G	2.677e^-4	0.831	SYNONYMOUS_CODING CG3294 UTR_3_PRIME CG3294 DOWNSTREAM Clect27
X	11683671	X_11683671_SNP [dm3] X_11789638_SNP [dm6]	C	T	2.682e^-4	0.831	INTRON Karl
3L	9685337	3L_9685337_SNP [dm3] 3L_9692237_SNP [dm6]	A	C	2.686e^-4	0.831	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6429162	3R_6429162_SNP [dm3] 3R_10603440_SNP [dm6]	G	A	2.691e^-4	0.831	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	4582039	2L_4582039_SNP [dm3] 2L_4582039_SNP [dm6]	G	T	2.692e^-4	0.831	DOWNSTREAM CR43716 INTRON dp
3R	10195281	3R_10195281_SNP [dm3] 3R_14369559_SNP [dm6]	C	T	2.706e^-4	0.831	UTR_5_PRIME NK7.1 INTRON NK7.1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16891206	3L_16891206_SNP [dm3] 3L_16898106_SNP [dm6]	G	C	2.707e^-4	0.831	INTRON Lmpt	TF binding site mE1_TFBS_cad
X	14667710	X_14667710_SNP [dm3] X_14773677_SNP [dm6]	C	A	2.718e^-4	0.831	INTERGENIC
X	771719	X_771719_SNP [dm3] X_877686_SNP [dm6]	C	T	2.719e^-4	0.831	INTRON CG43867
3L	4576516	3L_4576516_DEL [dm3] 3L_4576516_DEL [dm6]	CG	C	2.719e^-4	0.831	INTRON CG42540
2L	4582020	2L_4582020_SNP [dm3] 2L_4582020_SNP [dm6]	C	A	2.723e^-4	0.831	DOWNSTREAM CR43716 INTRON dp
3L	15002890	3L_15002890_SNP [dm3] 3L_15009790_SNP [dm6]	T	C	2.727e^-4	0.831	INTRON Reck
X	71579	X_71579_SNP [dm3] X_175192_SNP [dm6]	A	T	2.732e^-4	0.831	UPSTREAM tyn INTRON tyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4918103	2L_4918103_SNP [dm3] 2L_4918103_SNP [dm6]	A	G	2.739e^-4	0.831	INTRON hoe1
3L	15585044	3L_15585044_SNP [dm3] 3L_15591944_SNP [dm6]	G	C	2.742e^-4	0.831	INTRON RhoGAP71E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2341765	2L_2341765_DEL [dm3] 2L_2341765_DEL [dm6]	TTAGT	T	2.744e^-4	0.831	INTRON CG9967 & 1 other
3L	3312806	3L_3312806_SNP [dm3] 3L_3312806_SNP [dm6]	T	A	2.758e^-4	0.831	INTRON ZnT63C	TF binding site mE1_TFBS_cad
3L	12707584	3L_12707584_SNP [dm3] 3L_12714484_SNP [dm6]	G	C	2.759e^-4	0.831	INTERGENIC
X	21005911	X_21005911_SNP [dm3] X_21134884_SNP [dm6]	G	C	2.768e^-4	0.831	SYNONYMOUS_CODING CG34120
2R	2457358	2R_2457358_SNP [dm3] 2R_6569853_SNP [dm6]	A	G	2.776e^-4	0.831	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
X	142064	X_142064_INS [dm3] X_248031_INS [dm6]	C	CATAAA	2.778e^-4	0.831	INTRON G9a	TF binding site BDTNP1_TFBS_dl
3L	11336282	3L_11336282_SNP [dm3] 3L_11343182_SNP [dm6]	T	A	2.779e^-4	0.831	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	12410892	X_12410892_SNP [dm3] X_12516859_SNP [dm6]	A	T	2.785e^-4	0.831	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
2L	19530550	2L_19530550_SNP [dm3] 2L_19530550_SNP [dm6]	A	T	2.789e^-4	0.831	UPSTREAM CG10165 INTRON CG10137	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1
3R	6432763	3R_6432763_SNP [dm3] 3R_10607041_SNP [dm6]	G	T	2.794e^-4	0.831	INTRON hth
3L	10414119	3L_10414119_SNP [dm3] 3L_10421019_SNP [dm6]	T	C	2.800e^-4	0.831	INTERGENIC
2R	6361780	2R_6361780_DEL [dm3] 2R_10474275_DEL [dm6]	AACTCGA	A	2.803e^-4	0.831	INTRON whd
2L	14121243	2L_14121243_SNP [dm3] 2L_14121243_SNP [dm6]	G	A	2.808e^-4	0.831	INTERGENIC
2L	4570606	2L_4570606_SNP [dm3] 2L_4570606_SNP [dm6]	C	A	2.810e^-4	0.831	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4456687	2L_4456687_SNP [dm3] 2L_4456687_SNP [dm6]	G	C	2.817e^-4	0.831	DOWNSTREAM RpL27A & 1 other INTRON Gs1l	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	17439818	X_17439818_SNP [dm3] X_17545785_SNP [dm6]	C	T	2.821e^-4	0.831	INTRON CG43658
2L	2311242	2L_2311242_SNP [dm3] 2L_2311242_SNP [dm6]	A	T	2.827e^-4	0.831	UPSTREAM eys INTRON CG9967	TF binding site mE1_TFBS_Trl
2L	4570489	2L_4570489_SNP [dm3] 2L_4570489_SNP [dm6]	A	G	2.828e^-4	0.831	SYNONYMOUS_CODING dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6396746	3L_6396746_SNP [dm3] 3L_6403646_SNP [dm6]	C	A	2.830e^-4	0.831	INTRON CG42747
2L	12166290	2L_12166290_SNP [dm3] 2L_12166290_SNP [dm6]	T	C	2.836e^-4	0.831	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2R	9813759	2R_9813759_SNP [dm3] 2R_13926254_SNP [dm6]	C	T	2.848e^-4	0.831	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Trl
3L	4776205	3L_4776205_SNP [dm3] 3L_4776205_SNP [dm6]	G	C	2.850e^-4	0.831	INTRON RhoGEF64C	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	11530557	2L_11530557_SNP [dm3] 2L_11530557_SNP [dm6]	A	G	2.857e^-4	0.831	INTRON CG31706
3R	6046662	3R_6046662_SNP [dm3] 3R_10220940_SNP [dm6]	A	G	2.862e^-4	0.831	UTR_3_PRIME Syn
2L	2341293	2L_2341293_SNP [dm3] 2L_2341293_SNP [dm6]	C	T	2.863e^-4	0.831	INTRON CG9967 & 1 other
X	22128962	X_22128962_SNP [dm3] X_22727126_SNP [dm6]	C	A	2.863e^-4	0.831	INTRON CR44997	transposable element FlyBase
2R	7214999	2R_7214999_SNP [dm3] 2R_11327494_SNP [dm6]	T	G	2.866e^-4	0.831	INTRON sha
3L	10636984	3L_10636984_SNP [dm3] 3L_10643884_SNP [dm6]	G	A	2.866e^-4	0.831	SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
3L	10636991	3L_10636991_SNP [dm3] 3L_10643891_SNP [dm6]	G	T	2.866e^-4	0.831	NON_SYNONYMOUS_CODING CG14153 DOWNSTREAM CG14154 INTRON CG32066
X	5992240	X_5992240_SNP [dm3] X_6098207_SNP [dm6]	C	A	2.866e^-4	0.831	INTRON Nep1	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	21236040	2L_21236040_SNP [dm3] 2L_21236040_SNP [dm6]	C	A	2.871e^-4	0.831	INTRON CG31626
2L	2026289	2L_2026289_SNP [dm3] 2L_2026289_SNP [dm6]	T	A	2.876e^-4	0.831	INTRON CG4238
2R	19882830	2R_19882830_SNP [dm3] 2R_23995307_SNP [dm6]	G	A	2.876e^-4	0.831	UPSTREAM CG3860 DOWNSTREAM Unc-89 INTERGENIC
3R	25806647	3R_25806647_SNP [dm3] 3R_29980925_SNP [dm6]	G	C	2.878e^-4	0.831	INTERGENIC
2R	6019974	2R_6019974_SNP [dm3] 2R_10132469_SNP [dm6]	T	C	2.879e^-4	0.831	INTRON gem	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	695797	3L_695797_SNP [dm3] 3L_695797_SNP [dm6]	T	C	2.884e^-4	0.831	INTRON CG13894	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6049442	2L_6049442_SNP [dm3] 2L_6049442_SNP [dm6]	A	G	2.886e^-4	0.831	SYNONYMOUS_CODING CG12393 UPSTREAM CG34179 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6296135	3L_6296135_SNP [dm3] 3L_6303035_SNP [dm6]	G	T	2.887e^-4	0.831	EXON CR45420
3R	25806601	3R_25806601_SNP [dm3] 3R_29980879_SNP [dm6]	C	T	2.889e^-4	0.831	INTERGENIC
2R	9226543	2R_9226543_SNP [dm3] 2R_13339038_SNP [dm6]	G	A	2.898e^-4	0.831	INTRON CR44206	TF binding site BDTNP1_TFBS_twi
2R	9226545	2R_9226545_SNP [dm3] 2R_13339040_SNP [dm6]	A	G	2.898e^-4	0.831	INTRON CR44206	TF binding site BDTNP1_TFBS_twi
3L	4709970	3L_4709970_SNP [dm3] 3L_4709970_SNP [dm6]	A	T	2.899e^-4	0.831	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14236499	X_14236499_SNP [dm3] X_14342466_SNP [dm6]	G	T	2.904e^-4	0.831	INTRON dpr8
2R	6237679	2R_6237679_SNP [dm3] 2R_10350174_SNP [dm6]	G	C	2.915e^-4	0.831	INTRON CG42732
3L	12958591	3L_12958591_SNP [dm3] 3L_12965491_SNP [dm6]	C	A	2.922e^-4	0.831	NON_SYNONYMOUS_CODING Or69a INTRON Or69a
3L	16923505	3L_16923505_SNP [dm3] 3L_16930405_SNP [dm6]	C	G	2.927e^-4	0.831	SYNONYMOUS_CODING CG11905 DOWNSTREAM CG11905 INTRON CG11905	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	20731268	3L_20731268_SNP [dm3] 3L_20738168_SNP [dm6]	A	T	2.933e^-4	0.831	INTRON CG13252 & 1 other
X	22128961	X_22128961_SNP [dm3] X_22727125_SNP [dm6]	G	C	2.935e^-4	0.831	INTRON CR44997	transposable element FlyBase
3L	4567649	3L_4567649_SNP [dm3] 3L_4567649_SNP [dm6]	T	A	2.935e^-4	0.831	INTRON CG42540
3R	11039995	3R_11039995_SNP [dm3] 3R_15214273_SNP [dm6]	G	T	2.941e^-4	0.831	UPSTREAM CG6654 DOWNSTREAM SIDL INTRON CG4210
3R	22335994	3R_22335994_SNP [dm3] 3R_26510272_SNP [dm6]	C	T	2.951e^-4	0.831	INTRON plum
2R	7817766	2R_7817766_SNP [dm3] 2R_11930261_SNP [dm6]	C	T	2.957e^-4	0.831	UPSTREAM CR44312 INTERGENIC
3L	4667741	3L_4667741_SNP [dm3] 3L_4667741_SNP [dm6]	A	G	2.957e^-4	0.831	UPSTREAM CG32236 INTRON axo	TF binding site BDTNP1_TFBS_twi
X	21005820	X_21005820_SNP [dm3] X_21134793_SNP [dm6]	G	A	2.957e^-4	0.831	NON_SYNONYMOUS_CODING CG34120
3R	22359599	3R_22359599_SNP [dm3] 3R_26533877_SNP [dm6]	G	T	2.960e^-4	0.831	INTRON plum	TF binding site BDTNP1_TFBS_dl
2R	18309249	2R_18309249_SNP [dm3] 2R_22421744_SNP [dm6]	C	A	2.962e^-4	0.831	INTRON rad50	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17639180	X_17639180_SNP [dm3] X_17745147_SNP [dm6]	A	C	2.968e^-4	0.831	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2347949	3L_2347949_SNP [dm3] 3L_2347949_SNP [dm6]	T	A	2.970e^-4	0.831	INTERGENIC
X	7087263	X_7087263_SNP [dm3] X_7193230_SNP [dm6]	C	T	2.984e^-4	0.831	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_sbb
3R	24370460	3R_24370460_SNP [dm3] 3R_28544738_SNP [dm6]	A	T	2.987e^-4	0.831	UTR_5_PRIME CG12413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16649045	2R_16649045_SNP [dm3] 2R_20761540_SNP [dm6]	C	G	2.989e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	7819503	2R_7819503_SNP [dm3] 2R_11931998_SNP [dm6]	T	C	2.990e^-4	0.831	INTERGENIC
2L	9042526	2L_9042526_SNP [dm3] 2L_9042526_SNP [dm6]	C	T	2.991e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1279331	3L_1279331_SNP [dm3] 3L_1279331_SNP [dm6]	T	C	2.993e^-4	0.831	INTRON CG32333
3L	1279373	3L_1279373_SNP [dm3] 3L_1279373_SNP [dm6]	C	A	2.993e^-4	0.831	INTRON CG32333
X	5077989	X_5077989_SNP [dm3] X_5183956_SNP [dm6]	T	C	2.994e^-4	0.831	INTRON rg & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14913733	2R_14913733_SNP [dm3] 2R_19026228_SNP [dm6]	C	T	2.994e^-4	0.831	INTRON 5-HT1B
3R	14889937	3R_14889937_SNP [dm3] 3R_19064215_SNP [dm6]	C	T	3.006e^-4	0.831	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3L	4643981	3L_4643981_SNP [dm3] 3L_4643981_SNP [dm6]	G	C	3.012e^-4	0.831	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12109876	2L_12109876_SNP [dm3] 2L_12109876_SNP [dm6]	G	A	3.013e^-4	0.831	SYNONYMOUS_CODING Phae1 UPSTREAM Rab6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16815156	2R_16815156_SNP [dm3] 2R_20927651_SNP [dm6]	A	T	3.018e^-4	0.831	INTRON Rx
X	20565849	X_20565849_SNP [dm3] X_20694822_SNP [dm6]	A	G	3.019e^-4	0.831	NON_SYNONYMOUS_CODING run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4502912	3L_4502912_SNP [dm3] 3L_4502912_SNP [dm6]	G	A	3.022e^-4	0.831	SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9039619	2L_9039619_SNP [dm3] 2L_9039619_SNP [dm6]	C	A	3.022e^-4	0.831	INTERGENIC
X	11686417	X_11686417_SNP [dm3] X_11792384_SNP [dm6]	G	T	3.024e^-4	0.831	UPSTREAM CkIIbeta & 1 other DOWNSTREAM Karl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	11684210	X_11684210_SNP [dm3] X_11790177_SNP [dm6]	G	C	3.039e^-4	0.831	DOWNSTREAM CR44962 INTRON Karl
2R	3850908	2R_3850908_SNP [dm3] 2R_7963403_SNP [dm6]	A	C	3.049e^-4	0.831	INTRON nito	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19606344	2L_19606344_SNP [dm3] 2L_19606344_SNP [dm6]	T	A	3.062e^-4	0.831	UPSTREAM CR44978 & 1 other INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
2L	20355776	2L_20355776_SNP [dm3] 2L_20355776_SNP [dm6]	G	A	3.062e^-4	0.831	INTRON RtGEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18589590	3L_18589590_SNP [dm3] 3L_18596490_SNP [dm6]	G	A	3.067e^-4	0.831	EXON CR45389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5961323	2L_5961323_SNP [dm3] 2L_5961323_SNP [dm6]	A	T	3.068e^-4	0.831	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10091308	2L_10091308_SNP [dm3] 2L_10091308_SNP [dm6]	C	A	3.070e^-4	0.831	UTR_3_PRIME CG13133 INTRON CG44153
X	18849283	X_18849283_SNP [dm3] X_18955250_SNP [dm6]	C	T	3.071e^-4	0.831	INTRON CG43759
2R	17339748	2R_17339748_SNP [dm3] 2R_21452243_SNP [dm6]	C	T	3.074e^-4	0.831	INTRON Sdc
2R	18715443	2R_18715443_SNP [dm3] 2R_22827920_SNP [dm6]	C	T	3.076e^-4	0.831	SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
3L	8085310	3L_8085310_SNP [dm3] 3L_8092210_SNP [dm6]	C	T	3.084e^-4	0.831	UPSTREAM CG7565 INTRON Ect4	TF binding site mE1_TFBS_HSA
2R	19115189	2R_19115189_SNP [dm3] 2R_23227666_SNP [dm6]	T	G	3.104e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8530610	2R_8530610_SNP [dm3] 2R_12643105_SNP [dm6]	G	A	3.105e^-4	0.831	INTRON CG8785
3L	2902707	3L_2902707_SNP [dm3] 3L_2902707_SNP [dm6]	G	A	3.125e^-4	0.831	INTRON Shab
2R	6698893	2R_6698893_SNP [dm3] 2R_10811388_SNP [dm6]	A	G	3.126e^-4	0.831	SYNONYMOUS_CODING mms4 UPSTREAM CG7637 DOWNSTREAM CG12935 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9421581	2R_9421581_SNP [dm3] 2R_13534076_SNP [dm6]	T	C	3.129e^-4	0.831	INTRON Vmat	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9981570	2L_9981570_SNP [dm3] 2L_9981570_SNP [dm6]	A	G	3.131e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	11107642	3L_11107642_SNP [dm3] 3L_11114542_SNP [dm6]	C	T	3.137e^-4	0.831	UTR_3_PRIME fd68A UPSTREAM Sod
X	11348772	X_11348772_SNP [dm3] X_11454739_SNP [dm6]	C	T	3.141e^-4	0.831	UPSTREAM HP5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	2402449	2R_2402449_SNP [dm3] 2R_6514944_SNP [dm6]	G	T	3.148e^-4	0.831	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12848482	2L_12848482_DEL [dm3] 2L_12848482_DEL [dm6]	ATATTGCTCGACTCACATGC...	A	3.150e^-4	0.831	INTERGENIC
3R	5508142	3R_5508142_SNP [dm3] 3R_9682420_SNP [dm6]	C	T	3.154e^-4	0.831	SYNONYMOUS_CODING CG9444 DOWNSTREAM nmdyn-D7	TF binding site mE1_TFBS_inv
2R	14169845	2R_14169845_SNP [dm3] 2R_18282340_SNP [dm6]	G	A	3.155e^-4	0.831	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12514196	2L_12514196_SNP [dm3] 2L_12514196_SNP [dm6]	A	C	3.156e^-4	0.831	INTRON bun
X	21006911	X_21006911_SNP [dm3] X_21135884_SNP [dm6]	T	C	3.158e^-4	0.831	SYNONYMOUS_CODING CG34120
3L	13123855	3L_13123855_SNP [dm3] 3L_13130755_SNP [dm6]	G	C	3.165e^-4	0.831	INTERGENIC
2R	4143388	2R_4143388_SNP [dm3] 2R_8255883_SNP [dm6]	T	G	3.171e^-4	0.831	INTRON CG14760
3R	15012274	3R_15012274_SNP [dm3] 3R_19186552_SNP [dm6]	G	T	3.182e^-4	0.831	INTRON CG31475
2L	21327424	2L_21327424_SNP [dm3] 2L_21327424_SNP [dm6]	A	G	3.182e^-4	0.831	DOWNSTREAM CR42696 INTERGENIC
2L	5521003	2L_5521003_SNP [dm3] 2L_5521003_SNP [dm6]	C	T	3.183e^-4	0.831	DOWNSTREAM CG7371 INTRON cl
3R	13473626	3R_13473626_SNP [dm3] 3R_17647904_SNP [dm6]	T	C	3.185e^-4	0.831	UTR_5_PRIME CG14322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9722553	2L_9722553_SNP [dm3] 2L_9722553_SNP [dm6]	G	T	3.186e^-4	0.831	INTRON Nckx30C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10112599	2L_10112599_SNP [dm3] 2L_10112599_SNP [dm6]	C	A	3.192e^-4	0.831	INTRON CG44153 & 1 other
2R	18716019	2R_18716019_SNP [dm3] 2R_22828496_SNP [dm6]	C	G	3.192e^-4	0.831	INTRON CG30274 & 1 other
2L	14112153	2L_14112153_SNP [dm3] 2L_14112153_SNP [dm6]	T	G	3.193e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24348098	3R_24348098_SNP [dm3] 3R_28522376_SNP [dm6]	A	C	3.194e^-4	0.831	INTRON Ppn
2L	16809527	2L_16809527_SNP [dm3] 2L_16809527_SNP [dm6]	G	T	3.195e^-4	0.831	INTRON CG13280 & 1 other
2R	15471246	2R_15471246_SNP [dm3] 2R_19583741_SNP [dm6]	T	G	3.199e^-4	0.831	INTRON sm
3L	9947270	3L_9947270_SNP [dm3] 3L_9954170_SNP [dm6]	G	A	3.199e^-4	0.831	INTRON CG34356
2R	4291159	2R_4291159_SNP [dm3] 2R_8403654_SNP [dm6]	T	C	3.200e^-4	0.831	INTRON CG2121
X	16945822	X_16945822_SNP [dm3] X_17051789_SNP [dm6]	G	C	3.200e^-4	0.831	INTRON CG45002
2R	9821123	2R_9821123_SNP [dm3] 2R_13933618_SNP [dm6]	G	T	3.204e^-4	0.831	INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	5984241	3L_5984241_SNP [dm3] 3L_5991141_SNP [dm6]	T	G	3.204e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6693255	3L_6693255_SNP [dm3] 3L_6700155_SNP [dm6]	A	T	3.209e^-4	0.831	INTRON SP1173
2R	18895113	2R_18895113_SNP [dm3] 2R_23007590_SNP [dm6]	G	A	3.212e^-4	0.831	INTRON twi	TF binding site BDTNP1_TFBS_twi
2R	6143955	2R_6143955_SNP [dm3] 2R_10256450_SNP [dm6]	C	A	3.221e^-4	0.831	UPSTREAM CG12911 DOWNSTREAM CG12913 INTERGENIC
3L	4709979	3L_4709979_SNP [dm3] 3L_4709979_SNP [dm6]	T	G	3.226e^-4	0.831	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17099179	2L_17099179_SNP [dm3] 2L_17099179_SNP [dm6]	G	A	3.230e^-4	0.831	INTERGENIC
3R	13449061	3R_13449061_INS [dm3] 3R_17623339_INS [dm6]	A	ACAA	3.230e^-4	0.831	DOWNSTREAM tRNA:CR33534 INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	8527008	3R_8527008_SNP [dm3] 3R_12701286_SNP [dm6]	G	A	3.232e^-4	0.831	INTRON Past1
3L	18020277	3L_18020277_SNP [dm3] 3L_18027177_SNP [dm6]	T	C	3.258e^-4	0.831	INTRON Eip75B
X	12007944	X_12007944_SNP [dm3] X_12113911_SNP [dm6]	T	C	3.259e^-4	0.831	DOWNSTREAM CG2750 INTRON CR43960 & 1 other
2L	8117865	2L_8117865_SNP [dm3] 2L_8117865_SNP [dm6]	A	T	3.262e^-4	0.831	SPLICE_SITE_REGION mon2 INTRON mon2
2L	8117877	2L_8117877_SNP [dm3] 2L_8117877_SNP [dm6]	T	G	3.262e^-4	0.831	INTRON mon2
2R	3263969	2R_3263969_DEL [dm3] 2R_7376464_DEL [dm6]	GGCTGAGAACGTATGAAATG...	G	3.272e^-4	0.831	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	3155627	2L_3155627_SNP [dm3] 2L_3155627_SNP [dm6]	A	C	3.298e^-4	0.831	INTRON Mad	TF binding site mE1_TFBS_cad
2R	19890240	2R_19890240_SNP [dm3] 2R_24002717_SNP [dm6]	T	C	3.303e^-4	0.831	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9424104	2R_9424104_SNP [dm3] 2R_13536599_SNP [dm6]	A	G	3.315e^-4	0.831	UPSTREAM tRNA:K2:50C DOWNSTREAM CG6145 INTERGENIC
2R	16920487	2R_16920487_SNP [dm3] 2R_21032982_SNP [dm6]	T	C	3.315e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4280968	3L_4280968_SNP [dm3] 3L_4280968_SNP [dm6]	T	C	3.319e^-4	0.831	SYNONYMOUS_CODING CG1311 DOWNSTREAM CG11583
3L	5591370	3L_5591370_SNP [dm3] 3L_5598270_SNP [dm6]	T	A	3.319e^-4	0.831	DOWNSTREAM CG5150 & 1 other INTERGENIC
2R	17274651	2R_17274651_SNP [dm3] 2R_21387146_SNP [dm6]	T	A	3.327e^-4	0.831	NON_SYNONYMOUS_CODING Acox57D-p UPSTREAM EfSec	TF binding site mE1_TFBS_sens
3R	18141525	3R_18141525_SNP [dm3] 3R_22315803_SNP [dm6]	C	A	3.333e^-4	0.831	SPLICE_SITE_REGION CG34377 INTRON CG34377
X	38481	X_38481_SNP [dm3] X_142094_SNP [dm6]	A	G	3.333e^-4	0.831	UPSTREAM tyn DOWNSTREAM CG17707 EXON CR45473
2R	10398312	2R_10398312_SNP [dm3] 2R_14510807_SNP [dm6]	G	C	3.340e^-4	0.831	DOWNSTREAM Asx INTRON Asx
2L	1974016	2L_1974016_SNP [dm3] 2L_1974016_SNP [dm6]	T	A	3.344e^-4	0.831	UTR_5_PRIME Der-1 UPSTREAM Der-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8441431	2R_8441431_SNP [dm3] 2R_12553926_SNP [dm6]	A	G	3.345e^-4	0.831	INTRON fra	TF binding site mE1_TFBS_HSA
X	8355399	X_8355399_SNP [dm3] X_8461366_SNP [dm6]	A	T	3.346e^-4	0.831	UPSTREAM Es2 & 1 other INTERGENIC
X	20707600	X_20707600_SNP [dm3] X_20836573_SNP [dm6]	T	A	3.352e^-4	0.831	INTRON shakB
2R	16960579	2R_16960579_DEL [dm3] 2R_21073074_DEL [dm6]	AA	A	3.357e^-4	0.831	UPSTREAM CG10527 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	15274293	2R_15274293_SNP [dm3] 2R_19386788_SNP [dm6]	A	T	3.374e^-4	0.831	SPLICE_SITE_REGION CG10081 INTRON CG10081
2R	10414951	2R_10414951_SNP [dm3] 2R_14527446_SNP [dm6]	C	T	3.378e^-4	0.831	SYNONYMOUS_CODING ttv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5857739	3L_5857739_SNP [dm3] 3L_5864639_SNP [dm6]	G	T	3.380e^-4	0.831	INTERGENIC
3R	13576117	3R_13576117_SNP [dm3] 3R_17750395_SNP [dm6]	C	T	3.386e^-4	0.831	UTR_3_PRIME TyrR
X	6778037	X_6778037_SNP [dm3] X_6884004_SNP [dm6]	A	C	3.390e^-4	0.831	INTERGENIC
X	16294455	X_16294455_SNP [dm3] X_16400422_SNP [dm6]	A	G	3.397e^-4	0.831	DOWNSTREAM mei-41 INTRON CG9981	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7001979	3L_7001979_SNP [dm3] 3L_7008879_SNP [dm6]	A	G	3.403e^-4	0.831	INTRON Mp
3R	9018389	3R_9018389_SNP [dm3] 3R_13192667_SNP [dm6]	C	T	3.408e^-4	0.831	DOWNSTREAM CG8141 INTERGENIC
3L	15007445	3L_15007445_SNP [dm3] 3L_15014345_SNP [dm6]	C	T	3.413e^-4	0.831	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17760329	2R_17760329_INS [dm3] 2R_21872824_INS [dm6]	A	ACATA	3.420e^-4	0.831	INTRON Fili	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	19606336	2L_19606336_SNP [dm3] 2L_19606336_SNP [dm6]	A	G	3.421e^-4	0.831	UPSTREAM CR44978 & 1 other INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
2R	16649099	2R_16649099_SNP [dm3] 2R_20761594_SNP [dm6]	G	C	3.429e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	15356604	X_15356604_SNP [dm3] X_15462571_SNP [dm6]	G	T	3.430e^-4	0.831	UPSTREAM CG6299 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	1890586	3L_1890586_SNP [dm3] 3L_1890586_SNP [dm6]	T	A	3.436e^-4	0.831	INTRON Tmhs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16985889	2R_16985889_SNP [dm3] 2R_21098384_SNP [dm6]	G	A	3.443e^-4	0.831	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	2186133	3L_2186133_SNP [dm3] 3L_2186133_SNP [dm6]	T	C	3.444e^-4	0.831	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_twi
X	6777984	X_6777984_SNP [dm3] X_6883951_SNP [dm6]	A	C	3.445e^-4	0.831	INTERGENIC
3L	1018553	3L_1018553_SNP [dm3] 3L_1018553_SNP [dm6]	A	T	3.447e^-4	0.831	INTRON trio
2L	18936417	2L_18936417_SNP [dm3] 2L_18936417_SNP [dm6]	G	T	3.448e^-4	0.831	SPLICE_SITE_REGION ssp3 INTRON ssp3	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6503514	2L_6503514_SNP [dm3] 2L_6503514_SNP [dm6]	A	G	3.449e^-4	0.831	INTRON CG31637	TF binding site mE1_TFBS_Trl
2L	21925060	2L_21925060_SNP [dm3] 2L_21925060_SNP [dm6]	G	A	3.449e^-4	0.831	INTERGENIC	transposable element FlyBase
2L	9722295	2L_9722295_SNP [dm3] 2L_9722295_SNP [dm6]	C	G	3.451e^-4	0.831	INTRON Nckx30C
2R	4308729	2R_4308729_SNP [dm3] 2R_8421224_SNP [dm6]	G	A	3.459e^-4	0.831	SYNONYMOUS_CODING CSN7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2454661	2L_2454661_SNP [dm3] 2L_2454661_SNP [dm6]	G	T	3.465e^-4	0.831	UPSTREAM dpp INTRON dpp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11998262	3L_11998262_SNP [dm3] 3L_12005162_SNP [dm6]	A	T	3.465e^-4	0.831	INTRON CG6928
3R	25775475	3R_25775475_SNP [dm3] 3R_29949753_SNP [dm6]	G	A	3.467e^-4	0.831	INTERGENIC
3L	8573547	3L_8573547_SNP [dm3] 3L_8580447_SNP [dm6]	T	C	3.473e^-4	0.831	INTRON CG43078
2R	12150699	2R_12150699_SNP [dm3] 2R_16263194_SNP [dm6]	C	G	3.480e^-4	0.831	NON_SYNONYMOUS_CODING fidipidine
2R	6360982	2R_6360982_SNP [dm3] 2R_10473477_SNP [dm6]	G	A	3.485e^-4	0.831	INTRON whd
X	15420856	X_15420856_SNP [dm3] X_15526823_SNP [dm6]	G	A	3.486e^-4	0.831	INTRON Ac13E
3L	7207824	3L_7207824_SNP [dm3] 3L_7214724_SNP [dm6]	G	A	3.499e^-4	0.831	INTERGENIC
3L	3010458	3L_3010458_SNP [dm3] 3L_3010458_SNP [dm6]	A	G	3.504e^-4	0.831	UTR_3_PRIME FMRFaR
3L	6296131	3L_6296131_SNP [dm3] 3L_6303031_SNP [dm6]	C	A	3.517e^-4	0.831	EXON CR45420
X	18849308	X_18849308_SNP [dm3] X_18955275_SNP [dm6]	T	A	3.521e^-4	0.831	INTRON CG43759
X	198210	X_198210_SNP [dm3] X_304177_SNP [dm6]	G	C	3.532e^-4	0.831	INTRON CG3777
X	5280289	X_5280289_SNP [dm3] X_5386256_SNP [dm6]	C	A	3.535e^-4	0.831	INTRON SK
X	15424940	X_15424940_SNP [dm3] X_15530907_SNP [dm6]	G	A	3.536e^-4	0.831	INTRON Ac13E
3L	6020588	3L_6020588_SNP [dm3] 3L_6027488_SNP [dm6]	A	T	3.536e^-4	0.831	INTERGENIC
3R	25794027	3R_25794027_SNP [dm3] 3R_29968305_SNP [dm6]	T	A	3.546e^-4	0.831	INTRON TkR99D
3R	24347971	3R_24347971_SNP [dm3] 3R_28522249_SNP [dm6]	C	T	3.562e^-4	0.831	INTRON Ppn
2L	8117737	2L_8117737_SNP [dm3] 2L_8117737_SNP [dm6]	C	T	3.563e^-4	0.831	INTRON mon2
3L	9685218	3L_9685218_SNP [dm3] 3L_9692118_SNP [dm6]	C	T	3.565e^-4	0.831	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	15628530	3R_15628530_SNP [dm3] 3R_19802808_SNP [dm6]	T	C	3.566e^-4	0.831	DOWNSTREAM tRNA:CR31471 INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19526729	2L_19526729_SNP [dm3] 2L_19526729_SNP [dm6]	T	A	3.573e^-4	0.831	UTR_5_PRIME CG10137 UPSTREAM CG10166 DOWNSTREAM CG10165	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	6778036	X_6778036_SNP [dm3] X_6884003_SNP [dm6]	T	C	3.583e^-4	0.831	INTERGENIC
2R	8370686	2R_8370686_SNP [dm3] 2R_12483181_SNP [dm6]	G	A	3.585e^-4	0.831	INTRON Dh44-R2
3R	13930424	3R_13930424_SNP [dm3] 3R_18104702_SNP [dm6]	G	A	3.591e^-4	0.831	INTRON sr
X	12824376	X_12824376_SNP [dm3] X_12930343_SNP [dm6]	T	G	3.606e^-4	0.831	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5863007	3L_5863007_SNP [dm3] 3L_5869907_SNP [dm6]	C	G	3.613e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	12411135	X_12411135_SNP [dm3] X_12517102_SNP [dm6]	A	C	3.615e^-4	0.831	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other
3L	1238795	3L_1238795_SNP [dm3] 3L_1238795_SNP [dm6]	T	G	3.616e^-4	0.831	UPSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_cnc
2L	11592497	2L_11592497_DEL [dm3] 2L_11592497_DEL [dm6]	CTCCCACAC	C	3.616e^-4	0.831	UPSTREAM Acp33A INTRON kek2	TF binding site mE1_TFBS_inv
2L	637579	2L_637579_SNP [dm3] 2L_637579_SNP [dm6]	G	A	3.625e^-4	0.831	INTERGENIC
3L	11811349	3L_11811349_INS [dm3] 3L_11818249_INS [dm6]	A	GCTAGC	3.627e^-4	0.831	SPLICE_SITE_REGION CG5946 INTRON CG5946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6296130	3L_6296130_SNP [dm3] 3L_6303030_SNP [dm6]	A	G	3.635e^-4	0.831	EXON CR45420
X	15736334	X_15736334_SNP [dm3] X_15842301_SNP [dm6]	A	G	3.635e^-4	0.831	SYNONYMOUS_CODING Aats-arg	TF binding site mE1_TFBS_sens
3L	11408636	3L_11408636_SNP [dm3] 3L_11415536_SNP [dm6]	A	T	3.636e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22074059	3R_22074059_SNP [dm3] 3R_26248337_SNP [dm6]	G	A	3.636e^-4	0.831	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	15736367	X_15736367_SNP [dm3] X_15842334_SNP [dm6]	C	T	3.658e^-4	0.831	SYNONYMOUS_CODING Aats-arg	TF binding site mE1_TFBS_sens
3R	19062860	3R_19062860_SNP [dm3] 3R_23237138_SNP [dm6]	C	A	3.658e^-4	0.831	INTRON CG4467
3R	14837686	3R_14837686_SNP [dm3] 3R_19011964_SNP [dm6]	G	T	3.661e^-4	0.831	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	9363552	2L_9363552_SNP [dm3] 2L_9363552_SNP [dm6]	G	A	3.666e^-4	0.831	UPSTREAM CR43404 INTERGENIC
2L	9314246	2L_9314246_SNP [dm3] 2L_9314246_SNP [dm6]	G	A	3.669e^-4	0.831	INTERGENIC
2R	15168692	2R_15168692_SNP [dm3] 2R_19281187_SNP [dm6]	T	A	3.670e^-4	0.831	UTR_3_PRIME rib DOWNSTREAM CG11906
X	175821	X_175821_SNP [dm3] X_281788_SNP [dm6]	G	A	3.670e^-4	0.831	INTRON CG3777	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22094998	3R_22094998_SNP [dm3] 3R_26269276_SNP [dm6]	G	T	3.673e^-4	0.831	INTRON CG6154
X	16294463	X_16294463_SNP [dm3] X_16400430_SNP [dm6]	C	T	3.675e^-4	0.831	DOWNSTREAM mei-41 INTRON CG9981	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16294474	X_16294474_SNP [dm3] X_16400441_SNP [dm6]	A	T	3.675e^-4	0.831	DOWNSTREAM mei-41 INTRON CG9981	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14398524	3R_14398524_SNP [dm3] 3R_18572802_SNP [dm6]	G	T	3.688e^-4	0.831	UPSTREAM CG7694 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	11140579	X_11140579_SNP [dm3] X_11246546_SNP [dm6]	C	A	3.700e^-4	0.831	INTRON CG44422
X	11140581	X_11140581_INS [dm3] X_11246548_INS [dm6]	T	TA	3.700e^-4	0.831	INTRON CG44422
3R	13936901	3R_13936901_SNP [dm3] 3R_18111179_SNP [dm6]	C	T	3.704e^-4	0.831	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	186108	X_186108_INS [dm3] X_292075_INS [dm6]	C	CTGTCCTTGTTTTCCTTGA...	3.711e^-4	0.831	INTRON CG3777 & 1 other
X	178926	X_178926_SNP [dm3] X_284893_SNP [dm6]	G	A	3.719e^-4	0.831	UTR_3_PRIME CG13375 INTRON CG3777
X	9851222	X_9851222_SNP [dm3] X_9957189_SNP [dm6]	C	A	3.720e^-4	0.831	INTERGENIC
2L	4889761	2L_4889761_SNP [dm3] 2L_4889761_SNP [dm6]	C	T	3.728e^-4	0.831	UPSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20111688	2R_20111688_SNP [dm3] 2R_24224165_SNP [dm6]	T	A	3.735e^-4	0.831	INTRON CG30419	TF binding site mE1_TFBS_chinmo
2L	2122830	2L_2122830_SNP [dm3] 2L_2122830_SNP [dm6]	C	G	3.737e^-4	0.831	INTERGENIC
2R	12298407	2R_12298407_SNP [dm3] 2R_16410902_SNP [dm6]	C	T	3.740e^-4	0.831	INTRON Sema-2b
2L	9503310	2L_9503310_SNP [dm3] 2L_9503310_SNP [dm6]	C	T	3.744e^-4	0.831	INTRON CG33298	transposable element FlyBase
X	11140573	X_11140573_SNP [dm3] X_11246540_SNP [dm6]	T	A	3.760e^-4	0.831	INTRON CG44422
2R	12953538	2R_12953538_SNP [dm3] 2R_17066033_SNP [dm6]	T	C	3.763e^-4	0.831	UTR_3_PRIME CG6967 & 1 other DOWNSTREAM CG30460
2R	18715848	2R_18715848_SNP [dm3] 2R_22828325_SNP [dm6]	A	G	3.781e^-4	0.831	NON_SYNONYMOUS_CODING CG42284 UTR_3_PRIME CG30274
2R	19093613	2R_19093613_SNP [dm3] 2R_23206090_SNP [dm6]	T	A	3.802e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	10241614	2L_10241614_SNP [dm3] 2L_10241614_SNP [dm6]	A	G	3.806e^-4	0.831	SYNONYMOUS_CODING me31B DOWNSTREAM chico	TF binding site mE1_TFBS_sens
3L	9398341	3L_9398341_SNP [dm3] 3L_9405241_SNP [dm6]	G	T	3.807e^-4	0.831	DOWNSTREAM CG4022 INTRON Cpr67B
2R	20111667	2R_20111667_SNP [dm3] 2R_24224144_SNP [dm6]	T	A	3.820e^-4	0.831	INTRON CG30419	TF binding site mE1_TFBS_chinmo
3R	22348206	3R_22348206_SNP [dm3] 3R_26522484_SNP [dm6]	G	C	3.821e^-4	0.831	DOWNSTREAM CR45226 INTRON plum
3L	11408720	3L_11408720_SNP [dm3] 3L_11415620_SNP [dm6]	A	G	3.823e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8975674	2R_8975674_SNP [dm3] 2R_13088169_SNP [dm6]	C	T	3.827e^-4	0.831	INTERGENIC
3R	17207840	3R_17207840_SNP [dm3] 3R_21382118_SNP [dm6]	T	G	3.828e^-4	0.831	DOWNSTREAM tin INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	26800362	3R_26800362_SNP [dm3] 3R_30974640_SNP [dm6]	C	G	3.838e^-4	0.831	INTRON 5-HT7
2R	14169693	2R_14169693_SNP [dm3] 2R_18282188_SNP [dm6]	A	T	3.852e^-4	0.831	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8118044	2L_8118044_SNP [dm3] 2L_8118044_SNP [dm6]	G	C	3.854e^-4	0.831	NON_SYNONYMOUS_CODING mon2	TF binding site mE1_TFBS_sens
2R	17373886	2R_17373886_SNP [dm3] 2R_21486381_SNP [dm6]	G	A	3.857e^-4	0.831	SYNONYMOUS_CODING Sara DOWNSTREAM Fkbp14	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7588194	X_7588194_SNP [dm3] X_7694161_SNP [dm6]	A	T	3.869e^-4	0.831	INTRON CHES-1-like	TF binding site mE1_TFBS_Trl
2L	17307620	2L_17307620_SNP [dm3] 2L_17307620_SNP [dm6]	A	G	3.871e^-4	0.831	INTERGENIC
2R	14173761	2R_14173761_SNP [dm3] 2R_18286256_SNP [dm6]	C	T	3.872e^-4	0.831	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18146724	3R_18146724_INS [dm3] 3R_22321002_INS [dm6]	C	CGCC	3.872e^-4	0.831	INTRON CG34377
X	5819695	X_5819695_INS [dm3] X_5925662_INS [dm6]	T	TT	3.874e^-4	0.831	INTRON CG3726
X	11043543	X_11043543_SNP [dm3] X_11149510_SNP [dm6]	C	T	3.875e^-4	0.831	START_GAINED Lint-1 UTR_5_PRIME Lint-1 UPSTREAM Ran	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	12668831	2L_12668831_SNP [dm3] 2L_12668831_SNP [dm6]	G	A	3.883e^-4	0.831	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	985395	X_985395_SNP [dm3] X_1091362_SNP [dm6]	C	T	3.889e^-4	0.831	INTRON CG3655
3L	4105795	3L_4105795_SNP [dm3] 3L_4105795_SNP [dm6]	A	G	3.890e^-4	0.831	SYNONYMOUS_CODING Fit1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13097180	3R_13097180_SNP [dm3] 3R_17271458_SNP [dm6]	T	A	3.893e^-4	0.831	UPSTREAM CR44258 INTERGENIC
X	22129050	X_22129050_SNP [dm3] X_22727214_SNP [dm6]	T	A	3.896e^-4	0.831	INTRON CR44997	transposable element FlyBase
2L	3150819	2L_3150819_SNP [dm3] 2L_3150819_SNP [dm6]	C	G	3.897e^-4	0.831	INTRON Mad
3L	9735702	3L_9735702_SNP [dm3] 3L_9742602_SNP [dm6]	C	T	3.910e^-4	0.831	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9736022	3L_9736022_SNP [dm3] 3L_9742922_SNP [dm6]	G	A	3.910e^-4	0.831	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17207851	3R_17207851_SNP [dm3] 3R_21382129_SNP [dm6]	T	C	3.914e^-4	0.831	DOWNSTREAM tin INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	6778055	X_6778055_SNP [dm3] X_6884022_SNP [dm6]	T	G	3.917e^-4	0.831	INTERGENIC
X	6778061	X_6778061_SNP [dm3] X_6884028_SNP [dm6]	A	T	3.917e^-4	0.831	INTERGENIC
2R	6877085	2R_6877085_SNP [dm3] 2R_10989580_SNP [dm6]	C	T	3.918e^-4	0.831	INTRON luna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	17433254	3L_17433254_SNP [dm3] 3L_17440154_SNP [dm6]	A	G	3.923e^-4	0.831	INTRON CG18265
X	22129024	X_22129024_SNP [dm3] X_22727188_SNP [dm6]	C	A	3.930e^-4	0.831	INTRON CR44997	transposable element FlyBase
X	11140656	X_11140656_SNP [dm3] X_11246623_SNP [dm6]	A	G	3.934e^-4	0.831	INTRON CG44422
2L	12395281	2L_12395281_SNP [dm3] 2L_12395281_SNP [dm6]	T	A	3.937e^-4	0.831	INTRON bru-2
2L	12565636	2L_12565636_SNP [dm3] 2L_12565636_SNP [dm6]	C	G	3.939e^-4	0.831	INTERGENIC
2L	9100265	2L_9100265_SNP [dm3] 2L_9100265_SNP [dm6]	T	A	3.940e^-4	0.831	DOWNSTREAM CR44482 INTERGENIC
2R	19728938	2R_19728938_SNP [dm3] 2R_23841415_SNP [dm6]	A	G	3.942e^-4	0.831	DOWNSTREAM shu & 1 other INTERGENIC
3R	9599072	3R_9599072_SNP [dm3] 3R_13773350_SNP [dm6]	C	T	3.946e^-4	0.831	INTRON CG9297
3R	9599085	3R_9599085_SNP [dm3] 3R_13773363_SNP [dm6]	C	A	3.946e^-4	0.831	INTRON CG9297
X	17958625	X_17958625_SNP [dm3] X_18064592_SNP [dm6]	C	A	3.954e^-4	0.831	UTR_5_PRIME Dhc16F
3L	5514252	3L_5514252_INS [dm3] 3L_5521152_INS [dm6]	T	TACTGAAATTTTACTGAAAT...	3.956e^-4	0.831	INTRON Lkr
X	4649652	X_4649652_SNP [dm3] X_4755619_SNP [dm6]	T	A	3.957e^-4	0.831	INTERGENIC
2R	8548581	2R_8548581_SNP [dm3] 2R_12661076_SNP [dm6]	C	T	3.961e^-4	0.831	SYNONYMOUS_CODING nemy UTR_5_PRIME nemy
2R	16435531	2R_16435531_SNP [dm3] 2R_20548026_SNP [dm6]	A	G	3.964e^-4	0.831	SYNONYMOUS_CODING Obp57e UPSTREAM CG30148 DOWNSTREAM Cpr57A & 1 other
3L	14324399	3L_14324399_SNP [dm3] 3L_14331299_SNP [dm6]	T	G	3.965e^-4	0.831	INTRON fz
3L	9284828	3L_9284828_SNP [dm3] 3L_9291728_SNP [dm6]	G	T	3.975e^-4	0.831	INTERGENIC
3L	11287329	3L_11287329_SNP [dm3] 3L_11294229_SNP [dm6]	C	T	3.979e^-4	0.831	SYNONYMOUS_CODING CG6175	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
3R	16091500	3R_16091500_SNP [dm3] 3R_20265778_SNP [dm6]	T	G	3.984e^-4	0.831	INTRON cic
3L	8421347	3L_8421347_SNP [dm3] 3L_8428247_SNP [dm6]	C	T	3.991e^-4	0.831	UTR_3_PRIME Cbl INTRON Cbl
3L	502314	3L_502314_INS [dm3] 3L_502314_INS [dm6]	A	ACCA	3.997e^-4	0.831	DOWNSTREAM CG34268 INTRON klar
3L	886194	3L_886194_SNP [dm3] 3L_886194_SNP [dm6]	C	T	4.003e^-4	0.831	INTRON CG32479	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10857176	3L_10857176_SNP [dm3] 3L_10864076_SNP [dm6]	A	G	4.004e^-4	0.831	INTRON tna	TF binding site BDTNP1_TFBS_dl
2L	4571301	2L_4571301_SNP [dm3] 2L_4571301_SNP [dm6]	A	G	4.004e^-4	0.831	INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18826507	3R_18826507_SNP [dm3] 3R_23000785_SNP [dm6]	T	C	4.004e^-4	0.831	SYNONYMOUS_CODING CG34375	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9234880	2R_9234880_SNP [dm3] 2R_13347375_SNP [dm6]	A	G	4.007e^-4	0.831	INTRON CR44206
3R	26780382	3R_26780382_SNP [dm3] 3R_30954660_SNP [dm6]	T	G	4.014e^-4	0.831	INTERGENIC
3L	11336285	3L_11336285_SNP [dm3] 3L_11343185_SNP [dm6]	T	C	4.039e^-4	0.831	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	14942723	3L_14942723_SNP [dm3] 3L_14949623_SNP [dm6]	T	A	4.043e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11335610	3L_11335610_SNP [dm3] 3L_11342510_SNP [dm6]	T	C	4.050e^-4	0.831	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4619161	3L_4619161_SNP [dm3] 3L_4619161_SNP [dm6]	C	A	4.053e^-4	0.831	INTRON Src64B
3L	4576514	3L_4576514_SNP [dm3] 3L_4576514_SNP [dm6]	A	C	4.062e^-4	0.831	INTRON CG42540
2L	9154132	2L_9154132_SNP [dm3] 2L_9154132_SNP [dm6]	C	T	4.063e^-4	0.831	INTRON CG32982
2R	7845616	2R_7845616_DEL [dm3] 2R_11958111_DEL [dm6]	ACTTTCAAATGCACAA...	A	4.066e^-4	0.831	INTRON CG13188
3L	16867231	3L_16867231_SNP [dm3] 3L_16874131_SNP [dm6]	T	A	4.069e^-4	0.831	INTRON Lmpt
X	8093290	X_8093290_SNP [dm3] X_8199257_SNP [dm6]	A	G	4.078e^-4	0.831	INTRON sdt
2R	12370993	2R_12370993_SNP [dm3] 2R_16483488_SNP [dm6]	T	G	4.088e^-4	0.831	INTERGENIC
X	8355527	X_8355527_SNP [dm3] X_8461494_SNP [dm6]	C	T	4.100e^-4	0.831	START_GAINED Es2 UTR_5_PRIME Es2 UPSTREAM CG15347
X	1035750	X_1035750_INS [dm3] X_1141717_INS [dm6]	A	ATA	4.101e^-4	0.831	INTERGENIC
X	1035752	X_1035752_INS [dm3] X_1141719_INS [dm6]	T	TG	4.101e^-4	0.831	INTERGENIC
3L	7003753	3L_7003753_SNP [dm3] 3L_7010653_SNP [dm6]	C	A	4.109e^-4	0.831	INTRON Mp
2R	16911034	2R_16911034_SNP [dm3] 2R_21023529_SNP [dm6]	G	T	4.117e^-4	0.831	NON_SYNONYMOUS_CODING RIC-3 UTR_3_PRIME RIC-3
X	3009271	X_3009271_SNP [dm3] X_3115238_SNP [dm6]	A	G	4.125e^-4	0.831	INTRON kirre
3L	3126106	3L_3126106_SNP [dm3] 3L_3126106_SNP [dm6]	C	T	4.127e^-4	0.831	INTRON prominin-like	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	19096127	X_19096127_DEL [dm3] X_19202094_DEL [dm6]	AGAA	A	4.138e^-4	0.831	UPSTREAM CG7990 DOWNSTREAM Ulp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10976901	3L_10976901_SNP [dm3] 3L_10983801_SNP [dm6]	G	A	4.138e^-4	0.831	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10939972	3R_10939972_SNP [dm3] 3R_15114250_SNP [dm6]	G	A	4.138e^-4	0.831	INTRON CG42788
3L	18371704	3L_18371704_SNP [dm3] 3L_18378604_SNP [dm6]	C	T	4.139e^-4	0.831	INTERGENIC
2R	6589221	2R_6589221_DEL [dm3] 2R_10701716_DEL [dm6]	GTTG	G	4.145e^-4	0.831	INTRON stan
2L	21205225	2L_21205225_SNP [dm3] 2L_21205225_SNP [dm6]	C	A	4.152e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	4844676	3L_4844676_SNP [dm3] 3L_4844676_SNP [dm6]	G	C	4.157e^-4	0.831	INTERGENIC
3R	10995496	3R_10995496_SNP [dm3] 3R_15169774_SNP [dm6]	C	T	4.162e^-4	0.831	DOWNSTREAM Mf INTRON Gyc88E
2L	20355768	2L_20355768_SNP [dm3] 2L_20355768_SNP [dm6]	C	T	4.177e^-4	0.831	INTRON RtGEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2134702	2R_2134702_SNP [dm3] 2R_6247197_SNP [dm6]	G	A	4.183e^-4	0.831	INTRON Pld
X	186462	X_186462_SNP [dm3] X_292429_SNP [dm6]	T	A	4.191e^-4	0.831	INTRON CG3777 & 1 other
X	22128919	X_22128919_SNP [dm3] X_22727083_SNP [dm6]	G	A	4.195e^-4	0.831	INTRON CR44997	transposable element FlyBase
X	11677253	X_11677253_SNP [dm3] X_11783220_SNP [dm6]	G	A	4.205e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3149952	3L_3149952_SNP [dm3] 3L_3149952_SNP [dm6]	T	A	4.205e^-4	0.831	UTR_5_PRIME BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11811343	3L_11811343_INS [dm3] 3L_11818243_INS [dm6]	T	TT	4.207e^-4	0.831	INTRON CG5946	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9967563	3L_9967563_SNP [dm3] 3L_9974463_SNP [dm6]	C	A	4.215e^-4	0.831	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11336928	3L_11336928_SNP [dm3] 3L_11343828_SNP [dm6]	T	C	4.219e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_eve mE1_TFBS_HSA
X	16039331	X_16039331_SNP [dm3] X_16145298_SNP [dm6]	T	A	4.220e^-4	0.831	INTRON disco-r	TF binding site BDTNP1_TFBS_dl
2L	12395190	2L_12395190_SNP [dm3] 2L_12395190_SNP [dm6]	T	G	4.221e^-4	0.831	INTRON bru-2
3L	5261478	3L_5261478_SNP [dm3] 3L_5268378_SNP [dm6]	A	C	4.235e^-4	0.831	INTRON shep
3R	17557315	3R_17557315_SNP [dm3] 3R_21731593_SNP [dm6]	T	G	4.237e^-4	0.831	INTERGENIC
2R	18597465	2R_18597465_SNP [dm3] 2R_22709960_SNP [dm6]	T	C	4.245e^-4	0.831	SYNONYMOUS_CODING CG30275 UTR_3_PRIME CG30275
2L	21246561	2L_21246561_DEL [dm3] 2L_21246561_DEL [dm6]	GGACTCCTTCGCAATGAGAT...	G	4.251e^-4	0.831	INTRON Hr39
3L	4510128	3L_4510128_SNP [dm3] 3L_4510128_SNP [dm6]	G	A	4.256e^-4	0.831	DOWNSTREAM Tie INTERGENIC
X	20899076	X_20899076_SNP [dm3] X_21028049_SNP [dm6]	G	A	4.257e^-4	0.831	DOWNSTREAM CG1529 INTRON CG1532	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18172455	2R_18172455_SNP [dm3] 2R_22284950_SNP [dm6]	C	A	4.259e^-4	0.831	SYNONYMOUS_CODING dve	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	4709983	3L_4709983_SNP [dm3] 3L_4709983_SNP [dm6]	T	A	4.265e^-4	0.831	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6991411	2L_6991411_SNP [dm3] 2L_6991411_SNP [dm6]	C	T	4.266e^-4	0.831	INTRON uif
3R	14837660	3R_14837660_SNP [dm3] 3R_19011938_SNP [dm6]	T	A	4.278e^-4	0.831	INTRON gukh	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	1973962	2L_1973962_SNP [dm3] 2L_1973962_SNP [dm6]	A	G	4.279e^-4	0.831	UTR_5_PRIME Der-1 UPSTREAM Der-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	4649412	X_4649412_SNP [dm3] X_4755379_SNP [dm6]	C	G	4.290e^-4	0.831	INTERGENIC
2L	16813137	2L_16813137_SNP [dm3] 2L_16813137_SNP [dm6]	A	T	4.297e^-4	0.831	INTRON CG13280 & 1 other
3R	17044718	3R_17044718_SNP [dm3] 3R_21218996_SNP [dm6]	G	T	4.300e^-4	0.831	UPSTREAM Oga & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
X	8697695	X_8697695_DEL [dm3] X_8803662_DEL [dm6]	TAAATCATTTCTCATTTCAT...	T	4.305e^-4	0.831	INTRON Lim1
3L	8715657	3L_8715657_SNP [dm3] 3L_8722557_SNP [dm6]	G	T	4.305e^-4	0.831	SYNONYMOUS_CODING CG6511	TF binding site mE1_TFBS_sens
2R	12298396	2R_12298396_SNP [dm3] 2R_16410891_SNP [dm6]	A	T	4.307e^-4	0.831	INTRON Sema-2b
3L	10460607	3L_10460607_SNP [dm3] 3L_10467507_SNP [dm6]	T	G	4.319e^-4	0.831	SYNONYMOUS_CODING S-Lap3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22075354	3R_22075354_SNP [dm3] 3R_26249632_SNP [dm6]	G	A	4.323e^-4	0.831	INTRON CR42745
2R	9222535	2R_9222535_SNP [dm3] 2R_13335030_SNP [dm6]	T	C	4.330e^-4	0.831	INTRON CR44206
3L	5782017	3L_5782017_SNP [dm3] 3L_5788917_SNP [dm6]	C	T	4.331e^-4	0.831	DOWNSTREAM Bre1 INTERGENIC
3L	16891218	3L_16891218_SNP [dm3] 3L_16898118_SNP [dm6]	C	T	4.336e^-4	0.831	INTRON Lmpt	TF binding site mE1_TFBS_cad
X	16946069	X_16946069_SNP [dm3] X_17052036_SNP [dm6]	T	A	4.338e^-4	0.831	INTRON CG45002
2R	6325000	2R_6325000_DEL [dm3] 2R_10437495_DEL [dm6]	AACCTCAGGCGAATTTAAA...	A	4.342e^-4	0.831	UPSTREAM Galphao & 1 other DOWNSTREAM RanBPM INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	3756124	2R_3756124_SNP [dm3] 2R_7868619_SNP [dm6]	C	T	4.344e^-4	0.831	INTRON Dgk
3L	4567648	3L_4567648_SNP [dm3] 3L_4567648_SNP [dm6]	A	T	4.347e^-4	0.831	INTRON CG42540
2R	4189556	2R_4189556_SNP [dm3] 2R_8302051_SNP [dm6]	C	T	4.348e^-4	0.831	INTERGENIC
3R	22268155	3R_22268155_DEL [dm3] 3R_26442433_DEL [dm6]	AAA	A	4.351e^-4	0.831	INTRON tx
2R	8279361	2R_8279361_SNP [dm3] 2R_12391856_SNP [dm6]	T	G	4.355e^-4	0.831	UPSTREAM Cpr49Ad INTERGENIC
2L	8253505	2L_8253505_SNP [dm3] 2L_8253505_SNP [dm6]	A	T	4.355e^-4	0.831	UPSTREAM CG8086 INTRON CG8086
X	12414461	X_12414461_SNP [dm3] X_12520428_SNP [dm6]	C	A	4.361e^-4	0.831	SYNONYMOUS_CODING CG43921	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	21290668	X_21290668_SNP [dm3] X_21419641_SNP [dm6]	A	C	4.376e^-4	0.831	INTERGENIC
2R	9324976	2R_9324976_SNP [dm3] 2R_13437471_SNP [dm6]	C	A	4.379e^-4	0.831	START_GAINED CG42321 UTR_5_PRIME CG42321 UPSTREAM tRNA:CR30509 INTRON CG42321	TF binding site BDTNP1_TFBS_dl
3R	27763986	3R_27763986_DEL [dm3] 3R_31938264_DEL [dm6]	CC	C	4.384e^-4	0.831	UPSTREAM heph INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6778047	X_6778047_SNP [dm3] X_6884014_SNP [dm6]	T	C	4.387e^-4	0.831	INTERGENIC
X	16320590	X_16320590_DEL [dm3] X_16426557_DEL [dm6]	ATGA	A	4.397e^-4	0.831	INTRON hang	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14010822	3R_14010822_SNP [dm3] 3R_18185100_SNP [dm6]	A	G	4.403e^-4	0.831	SYNONYMOUS_CODING CG7208 UPSTREAM Arp5
X	2783236	X_2783236_SNP [dm3] X_2889203_SNP [dm6]	A	T	4.408e^-4	0.831	INTRON kirre
2R	7817869	2R_7817869_SNP [dm3] 2R_11930364_SNP [dm6]	C	A	4.410e^-4	0.831	UPSTREAM CR44312 INTERGENIC
2L	7913087	2L_7913087_SNP [dm3] 2L_7913087_SNP [dm6]	G	A	4.417e^-4	0.831	INTRON Snoo
2L	7913099	2L_7913099_SNP [dm3] 2L_7913099_SNP [dm6]	A	G	4.417e^-4	0.831	INTRON Snoo
X	10956506	X_10956506_SNP [dm3] X_11062473_SNP [dm6]	T	G	4.417e^-4	0.831	INTRON CG1537
2L	10491772	2L_10491772_SNP [dm3] 2L_10491772_SNP [dm6]	T	C	4.418e^-4	0.831	UPSTREAM CG13144 DOWNSTREAM Myo31DF INTERGENIC
2L	13079252	2L_13079252_SNP [dm3] 2L_13079252_SNP [dm6]	G	C	4.431e^-4	0.831	INTERGENIC
2R	14169701	2R_14169701_SNP [dm3] 2R_18282196_SNP [dm6]	G	C	4.432e^-4	0.831	INTRON sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10687196	3L_10687196_SNP [dm3] 3L_10694096_SNP [dm6]	G	A	4.450e^-4	0.831	UTR_5_PRIME CG6463 UPSTREAM CG33493 DOWNSTREAM NijA	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13889474	3L_13889474_SNP [dm3] 3L_13896374_SNP [dm6]	T	C	4.456e^-4	0.831	INTRON dysc
3R	25514290	3R_25514290_SNP [dm3] 3R_29688568_SNP [dm6]	C	G	4.458e^-4	0.831	INTRON Obp99c
2L	12403021	2L_12403021_SNP [dm3] 2L_12403021_SNP [dm6]	A	T	4.461e^-4	0.831	DOWNSTREAM Pkd2 & 1 other INTERGENIC
2R	3926056	2R_3926056_SNP [dm3] 2R_8038551_SNP [dm6]	C	T	4.462e^-4	0.831	INTRON Optix	regulatory region REDfly_CRMs
2L	3165139	2L_3165139_SNP [dm3] 2L_3165139_SNP [dm6]	T	G	4.464e^-4	0.831	INTRON Hydr2	TF binding site BDTNP1_TFBS_da
3R	7743614	3R_7743614_SNP [dm3] 3R_11917892_SNP [dm6]	A	C	4.468e^-4	0.831	INTRON Cad87A
2R	19054603	2R_19054603_SNP [dm3] 2R_23167080_SNP [dm6]	G	T	4.469e^-4	0.831	INTRON CG34371	TF binding site mE1_TFBS_HSA
2L	6884899	2L_6884899_SNP [dm3] 2L_6884899_SNP [dm6]	T	A	4.471e^-4	0.831	INTRON Nlg2
2L	8118541	2L_8118541_SNP [dm3] 2L_8118541_SNP [dm6]	C	T	4.472e^-4	0.831	SYNONYMOUS_CODING mon2
2R	18896808	2R_18896808_SNP [dm3] 2R_23009285_SNP [dm6]	G	A	4.476e^-4	0.831	INTRON twi	TF binding site mE1_TFBS_chinmo
3R	24819944	3R_24819944_SNP [dm3] 3R_28994222_SNP [dm6]	G	A	4.476e^-4	0.831	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12197975	3R_12197975_SNP [dm3] 3R_16372253_SNP [dm6]	T	G	4.478e^-4	0.831	EXON CR45193	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16136739	2R_16136739_SNP [dm3] 2R_20249234_SNP [dm6]	C	T	4.483e^-4	0.831	SYNONYMOUS_CODING CG9864	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13894612	3L_13894612_SNP [dm3] 3L_13901512_SNP [dm6]	T	A	4.484e^-4	0.831	INTRON dysc
3L	9685150	3L_9685150_SNP [dm3] 3L_9692050_SNP [dm6]	T	A	4.491e^-4	0.831	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	7996913	3R_7996913_SNP [dm3] 3R_12171191_SNP [dm6]	C	T	4.492e^-4	0.831	INTERGENIC
2L	12651901	2L_12651901_SNP [dm3] 2L_12651901_SNP [dm6]	A	G	4.501e^-4	0.831	INTERGENIC
3L	13889284	3L_13889284_SNP [dm3] 3L_13896184_SNP [dm6]	T	C	4.507e^-4	0.831	INTRON dysc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1833157	2L_1833157_SNP [dm3] 2L_1833157_SNP [dm6]	C	T	4.514e^-4	0.831	UPSTREAM c-cup INTERGENIC
X	8697690	X_8697690_SNP [dm3] X_8803657_SNP [dm6]	G	T	4.518e^-4	0.831	INTRON Lim1
2R	13935297	2R_13935297_DEL [dm3] 2R_18047792_DEL [dm6]	TG	A	4.519e^-4	0.831	UPSTREAM CG34005 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9253994	2R_9253994_SNP [dm3] 2R_13366489_SNP [dm6]	C	A	4.519e^-4	0.831	INTERGENIC
2R	15672990	2R_15672990_SNP [dm3] 2R_19785485_SNP [dm6]	G	C	4.524e^-4	0.831	EXON CR45231	regulatory region REDfly_CRMs
X	4719972	X_4719972_SNP [dm3] X_4825939_SNP [dm6]	T	C	4.525e^-4	0.831	UPSTREAM CG12682 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7819777	2R_7819777_SNP [dm3] 2R_11932272_SNP [dm6]	G	A	4.526e^-4	0.831	INTERGENIC
2L	4502979	2L_4502979_SNP [dm3] 2L_4502979_SNP [dm6]	A	T	4.529e^-4	0.831	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17150793	X_17150793_SNP [dm3] X_17256760_SNP [dm6]	A	G	4.530e^-4	0.831	INTRON f
X	4649435	X_4649435_SNP [dm3] X_4755402_SNP [dm6]	C	T	4.536e^-4	0.831	INTERGENIC
X	3432421	X_3432421_SNP [dm3] X_3538388_SNP [dm6]	T	G	4.542e^-4	0.831	INTRON CG32791
2L	2311234	2L_2311234_SNP [dm3] 2L_2311234_SNP [dm6]	T	A	4.547e^-4	0.831	UPSTREAM eys INTRON CG9967	TF binding site mE1_TFBS_Trl

Missing results

By genomic position
Variant impact
Gene name

Branching_O2_5pc phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results