DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.332e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.0038	0.0819

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2074 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	21765101	3R_21765101_SNP [dm3] 3R_25939379_SNP [dm6]	T	C	8.594e^-8	0.147	INTRON CCAP-R
3R	21765117	3R_21765117_SNP [dm3] 3R_25939395_SNP [dm6]	C	A	1.573e^-7	0.147	INTRON CCAP-R
3L	12090492	3L_12090492_SNP [dm3] 3L_12097392_SNP [dm6]	C	T	3.809e^-7	0.195	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21765153	3R_21765153_SNP [dm3] 3R_25939431_SNP [dm6]	C	T	4.155e^-7	0.195	INTRON CCAP-R
3R	7405095	3R_7405095_SNP [dm3] 3R_11579373_SNP [dm6]	G	A	6.206e^-7	0.233	SYNONYMOUS_CODING CG5342 UPSTREAM CG6790
3L	10428014	3L_10428014_SNP [dm3] 3L_10434914_SNP [dm6]	A	G	1.589e^-6	0.433	UPSTREAM Ir67c INTERGENIC
X	11753161	X_11753161_SNP [dm3] X_11859128_SNP [dm6]	T	A	1.867e^-6	0.433	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	13856445	3L_13856445_SNP [dm3] 3L_13863345_SNP [dm6]	G	T	2.221e^-6	0.433	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3319372	2L_3319372_SNP [dm3] 2L_3319372_SNP [dm6]	T	G	2.281e^-6	0.433	NON_SYNONYMOUS_CODING CG3326 UPSTREAM CG8837	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7405598	3R_7405598_SNP [dm3] 3R_11579876_SNP [dm6]	C	T	2.307e^-6	0.433	SYNONYMOUS_CODING CG5342
2L	4925780	2L_4925780_SNP [dm3] 2L_4925780_SNP [dm6]	C	T	2.787e^-6	0.455	INTRON hoe1
2R	12469126	2R_12469126_SNP [dm3] 2R_16581621_SNP [dm6]	T	A	2.958e^-6	0.455	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4781227	3L_4781227_SNP [dm3] 3L_4781227_SNP [dm6]	G	T	3.158e^-6	0.455	INTRON RhoGEF64C
X	14937788	X_14937788_SNP [dm3] X_15043755_SNP [dm6]	A	C	3.779e^-6	0.502	UPSTREAM CG5541 INTRON hiw	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6027243	3L_6027243_SNP [dm3] 3L_6034143_SNP [dm6]	G	C	4.727e^-6	0.502	SYNONYMOUS_CODING CG10477
3L	20823783	3L_20823783_SNP [dm3] 3L_20830683_SNP [dm6]	T	C	4.816e^-6	0.502	INTRON Pka-R1
3L	12090477	3L_12090477_SNP [dm3] 3L_12097377_SNP [dm6]	G	A	5.280e^-6	0.502	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12725446	3R_12725446_SNP [dm3] 3R_16899724_SNP [dm6]	T	C	5.292e^-6	0.502	EXON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1526854	2R_1526854_SNP [dm3] 2R_5639349_SNP [dm6]	T	C	5.720e^-6	0.502	INTERGENIC	transposable element FlyBase
2L	3319211	2L_3319211_SNP [dm3] 2L_3319211_SNP [dm6]	C	T	6.174e^-6	0.502	INTRON CG3326
3L	6444416	3L_6444416_SNP [dm3] 3L_6451316_SNP [dm6]	G	C	6.221e^-6	0.502	INTRON CG42747
2R	1526912	2R_1526912_SNP [dm3] 2R_5639407_SNP [dm6]	C	G	6.576e^-6	0.502	INTERGENIC	transposable element FlyBase
2R	1526842	2R_1526842_SNP [dm3] 2R_5639337_SNP [dm6]	T	G	6.895e^-6	0.502	INTERGENIC	transposable element FlyBase
2L	3319196	2L_3319196_SNP [dm3] 2L_3319196_SNP [dm6]	T	C	6.984e^-6	0.502	INTRON CG3326
2R	1527456	2R_1527456_SNP [dm3] 2R_5639951_SNP [dm6]	C	A	7.495e^-6	0.502	DOWNSTREAM CG11665 INTERGENIC	TF binding site mE1_TFBS_sens
2L	21942650	2L_21942650_SNP [dm3] 2L_21942650_SNP [dm6]	G	A	7.559e^-6	0.502	INTERGENIC
3L	1879981	3L_1879981_SNP [dm3] 3L_1879981_SNP [dm6]	T	G	7.701e^-6	0.502	INTRON CG13937
3L	15535565	3L_15535565_SNP [dm3] 3L_15542465_SNP [dm6]	G	A	7.762e^-6	0.502	INTRON CrebA
2R	1527352	2R_1527352_SNP [dm3] 2R_5639847_SNP [dm6]	G	T	8.067e^-6	0.502	INTERGENIC	TF binding site mE1_TFBS_sens
X	5929427	X_5929427_INS [dm3] X_6035394_INS [dm6]	T	TGTGCA	8.254e^-6	0.502	DOWNSTREAM rux INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7405258	3R_7405258_SNP [dm3] 3R_11579536_SNP [dm6]	G	C	8.294e^-6	0.502	NON_SYNONYMOUS_CODING CG5342 UPSTREAM CG6790
2R	12225410	2R_12225410_SNP [dm3] 2R_16337905_SNP [dm6]	A	T	9.594e^-6	0.562	UPSTREAM Hmgs INTRON Hmgs
X	15140053	X_15140053_DEL [dm3] X_15246020_DEL [dm6]	TA	T	1.097e^-5	0.605	INTERGENIC
2R	18024993	2R_18024993_SNP [dm3] 2R_22137488_SNP [dm6]	C	T	1.108e^-5	0.605	UTR_5_PRIME a INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3L	1880245	3L_1880245_SNP [dm3] 3L_1880245_SNP [dm6]	A	G	1.170e^-5	0.605	INTRON CG13937
X	15140070	X_15140070_SNP [dm3] X_15246037_SNP [dm6]	C	A	1.203e^-5	0.605	INTERGENIC
2R	10530718	2R_10530718_SNP [dm3] 2R_14643213_SNP [dm6]	A	G	1.216e^-5	0.605	INTERGENIC
2L	7602294	2L_7602294_SNP [dm3] 2L_7602294_SNP [dm6]	T	C	1.238e^-5	0.605	INTERGENIC
2R	13715758	2R_13715758_DEL [dm3] 2R_17828253_DEL [dm6]	TT	T	1.305e^-5	0.605	INTRON grh
3L	2701891	3L_2701891_INS [dm3] 3L_2701891_INS [dm6]	T	TTGCCATGTCGAAAT...	1.326e^-5	0.605	INTRON Fife
2L	13679639	2L_13679639_SNP [dm3] 2L_13679639_SNP [dm6]	C	T	1.348e^-5	0.605	INTRON CG31814
3L	4814409	3L_4814409_SNP [dm3] 3L_4814409_SNP [dm6]	C	A	1.374e^-5	0.605	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11252739	2L_11252739_SNP [dm3] 2L_11252739_SNP [dm6]	A	G	1.388e^-5	0.605	INTRON ab
3L	10427978	3L_10427978_SNP [dm3] 3L_10434878_SNP [dm6]	A	C	1.423e^-5	0.606	UPSTREAM Ir67c INTERGENIC
2L	18221155	2L_18221155_SNP [dm3] 2L_18221155_SNP [dm6]	A	G	1.489e^-5	0.621	INTRON CG42750
2L	7465289	2L_7465289_SNP [dm3] 2L_7465289_SNP [dm6]	G	A	1.526e^-5	0.622	INTERGENIC
2L	9816396	2L_9816396_SNP [dm3] 2L_9816396_SNP [dm6]	G	A	1.566e^-5	0.625	INTRON nAChRalpha6
3L	15535891	3L_15535891_SNP [dm3] 3L_15542791_SNP [dm6]	G	T	1.655e^-5	0.637	INTRON CrebA
3R	23399255	3R_23399255_SNP [dm3] 3R_27573533_SNP [dm6]	G	A	1.705e^-5	0.637	INTRON wdb
3L	5002002	3L_5002002_SNP [dm3] 3L_5002002_SNP [dm6]	G	A	1.714e^-5	0.637	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1526909	2R_1526909_INS [dm3] 2R_5639404_INS [dm6]	T	TT	1.734e^-5	0.637	INTERGENIC	transposable element FlyBase
2L	9837384	2L_9837384_SNP [dm3] 2L_9837384_SNP [dm6]	C	T	1.777e^-5	0.637	INTRON nAChRalpha6
3R	17909495	3R_17909495_SNP [dm3] 3R_22083773_SNP [dm6]	C	T	1.801e^-5	0.637	DOWNSTREAM CG13408 INTERGENIC
X	5030428	X_5030428_SNP [dm3] X_5136395_SNP [dm6]	C	A	1.868e^-5	0.637	INTRON rg & 1 other
2R	1526911	2R_1526911_SNP [dm3] 2R_5639406_SNP [dm6]	A	G	1.868e^-5	0.637	INTERGENIC	transposable element FlyBase
3L	17706810	3L_17706810_SNP [dm3] 3L_17713710_SNP [dm6]	C	A	1.911e^-5	0.637	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2R	13715573	2R_13715573_SNP [dm3] 2R_17828068_SNP [dm6]	T	A	1.936e^-5	0.637	INTRON grh
2R	13715820	2R_13715820_SNP [dm3] 2R_17828315_SNP [dm6]	T	C	1.993e^-5	0.644	INTRON grh
2L	3309778	2L_3309778_SNP [dm3] 2L_3309778_SNP [dm6]	G	C	2.144e^-5	0.66	SYNONYMOUS_CODING CG15406 INTRON CG3277
X	15140057	X_15140057_SNP [dm3] X_15246024_SNP [dm6]	C	T	2.181e^-5	0.66	INTERGENIC
X	12445482	X_12445482_SNP [dm3] X_12551449_SNP [dm6]	G	A	2.199e^-5	0.66	INTRON CG43921
3L	12090482	3L_12090482_SNP [dm3] 3L_12097382_SNP [dm6]	T	C	2.233e^-5	0.66	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17909507	3R_17909507_SNP [dm3] 3R_22083785_SNP [dm6]	G	T	2.238e^-5	0.66	DOWNSTREAM CG13408 INTERGENIC
3L	16682919	3L_16682919_SNP [dm3] 3L_16689819_SNP [dm6]	C	T	2.253e^-5	0.66	INTRON Lasp & 2 others EXON CR45179
2L	15795648	2L_15795648_SNP [dm3] 2L_15795648_SNP [dm6]	A	G	2.349e^-5	0.678	INTERGENIC
X	14947930	X_14947930_SNP [dm3] X_15053897_SNP [dm6]	G	A	2.398e^-5	0.681	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1879909	3L_1879909_SNP [dm3] 3L_1879909_SNP [dm6]	C	T	2.512e^-5	0.7	INTRON CG13937
3R	17308414	3R_17308414_SNP [dm3] 3R_21482692_SNP [dm6]	A	G	2.539e^-5	0.7	SYNONYMOUS_CODING CG7922	TF binding site mE1_TFBS_sens
X	5929438	X_5929438_SNP [dm3] X_6035405_SNP [dm6]	C	T	2.624e^-5	0.708	DOWNSTREAM rux INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10684999	3L_10684999_SNP [dm3] 3L_10691899_SNP [dm6]	A	T	2.641e^-5	0.708	UTR_3_PRIME CG11811 DOWNSTREAM CG33493
3L	3457966	3L_3457966_SNP [dm3] 3L_3457966_SNP [dm6]	A	C	2.741e^-5	0.724	SYNONYMOUS_CODING eIF5B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1442721	2R_1442721_SNP [dm3] 2R_5555216_SNP [dm6]	C	T	2.804e^-5	0.729	INTERGENIC	transposable element FlyBase
3L	15535784	3L_15535784_SNP [dm3] 3L_15542684_SNP [dm6]	G	A	2.839e^-5	0.729	INTRON CrebA
3R	14380596	3R_14380596_SNP [dm3] 3R_18554874_SNP [dm6]	T	G	2.920e^-5	0.733	INTERGENIC
3L	1879982	3L_1879982_INS [dm3] 3L_1879982_INS [dm6]	C	CT	2.932e^-5	0.733	INTRON CG13937
3L	18326323	3L_18326323_SNP [dm3] 3L_18333223_SNP [dm6]	G	A	3.017e^-5	0.744	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	1529403	2R_1529403_SNP [dm3] 2R_5641898_SNP [dm6]	A	T	3.127e^-5	0.754	UTR_3_PRIME CG11665
2L	3885087	2L_3885087_SNP [dm3] 2L_3885087_SNP [dm6]	T	C	3.135e^-5	0.754	INTRON capu
3L	20805578	3L_20805578_INS [dm3] 3L_20812478_INS [dm6]	A	ATA	3.284e^-5	0.777	DOWNSTREAM CG3618 INTRON CG3680	TF binding site mE1_TFBS_sens
2R	9494640	2R_9494640_SNP [dm3] 2R_13607135_SNP [dm6]	A	T	3.331e^-5	0.777	INTERGENIC
2L	20749865	2L_20749865_SNP [dm3] 2L_20749865_SNP [dm6]	A	T	3.386e^-5	0.777	UTR_3_PRIME Fs_2_Ket
2L	1558647	2L_1558647_SNP [dm3] 2L_1558647_SNP [dm6]	A	C	3.401e^-5	0.777	INTRON haf
2R	3258089	2R_3258089_SNP [dm3] 2R_7370584_SNP [dm6]	A	G	3.441e^-5	0.777	INTRON Dscam1	regulatory region REDfly_CRMs
3L	1870055	3L_1870055_SNP [dm3] 3L_1870055_SNP [dm6]	C	A	3.512e^-5	0.778	NON_SYNONYMOUS_CODING CG13924 UPSTREAM CG13924 DOWNSTREAM CG12025	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9069821	X_9069821_DEL [dm3] X_9175788_DEL [dm6]	CG	C	3.582e^-5	0.778	UTR_3_PRIME mei-P26 DOWNSTREAM mei-P26
3L	14762054	3L_14762054_SNP [dm3] 3L_14768954_SNP [dm6]	A	T	3.664e^-5	0.778	NON_SYNONYMOUS_CODING CG17173 DOWNSTREAM mop
2R	1526843	2R_1526843_SNP [dm3] 2R_5639338_SNP [dm6]	T	G	3.707e^-5	0.778	INTERGENIC	transposable element FlyBase
3R	22997258	3R_22997258_SNP [dm3] 3R_27171536_SNP [dm6]	C	T	3.711e^-5	0.778	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
X	5798293	X_5798293_INS [dm3] X_5904260_INS [dm6]	A	ACA	3.715e^-5	0.778	UTR_3_PRIME Act5C DOWNSTREAM Act5C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15401156	X_15401156_SNP [dm3] X_15507123_SNP [dm6]	T	C	3.733e^-5	0.778	UPSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14031381	2R_14031381_SNP [dm3] 2R_18143876_SNP [dm6]	C	T	3.924e^-5	0.79	SYNONYMOUS_CODING pAbp DOWNSTREAM snoRNA:Psi18S-1347a & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21768184	3R_21768184_SNP [dm3] 3R_25942462_SNP [dm6]	A	C	3.929e^-5	0.79	INTRON CCAP-R
3L	9655465	3L_9655465_SNP [dm3] 3L_9662365_SNP [dm6]	T	C	3.955e^-5	0.79	INTRON fry	TF binding site BDTNP1_TFBS_twi
3R	22750326	3R_22750326_SNP [dm3] 3R_26924604_SNP [dm6]	A	T	3.971e^-5	0.79	INTRON sda
2L	16372991	2L_16372991_SNP [dm3] 2L_16372991_SNP [dm6]	A	G	4.003e^-5	0.79	INTERGENIC
3L	10652324	3L_10652324_SNP [dm3] 3L_10659224_SNP [dm6]	G	T	4.050e^-5	0.791	INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	20300823	2L_20300823_SNP [dm3] 2L_20300823_SNP [dm6]	C	T	4.104e^-5	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12102515	3L_12102515_SNP [dm3] 3L_12109415_SNP [dm6]	C	G	4.155e^-5	0.795	INTERGENIC
3L	5277429	3L_5277429_INS [dm3] 3L_5284329_INS [dm6]	A	AG	4.404e^-5	0.828	INTERGENIC
3R	15551825	3R_15551825_SNP [dm3] 3R_19726103_SNP [dm6]	A	G	4.413e^-5	0.828	INTERGENIC
2L	16373003	2L_16373003_SNP [dm3] 2L_16373003_SNP [dm6]	T	C	4.568e^-5	0.842	INTERGENIC
3R	13302473	3R_13302473_SNP [dm3] 3R_17476751_SNP [dm6]	G	T	4.657e^-5	0.842	INTRON Dscam3
2L	1558686	2L_1558686_SNP [dm3] 2L_1558686_SNP [dm6]	T	C	4.664e^-5	0.842	INTRON haf
2R	17591121	2R_17591121_SNP [dm3] 2R_21703616_SNP [dm6]	A	G	4.668e^-5	0.842	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	4925754	2L_4925754_INS [dm3] 2L_4925754_INS [dm6]	A	AT	4.772e^-5	0.852	INTRON hoe1
2R	1526112	2R_1526112_SNP [dm3] 2R_5638607_SNP [dm6]	C	T	4.932e^-5	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_shn mE1_TFBS_HSA
2R	6663611	2R_6663611_SNP [dm3] 2R_10776106_SNP [dm6]	G	A	4.988e^-5	0.863	INTRON CG33144
X	9192763	X_9192763_SNP [dm3] X_9298730_SNP [dm6]	G	T	5.083e^-5	0.863	INTRON lz
3L	1333890	3L_1333890_SNP [dm3] 3L_1333890_SNP [dm6]	C	T	5.125e^-5	0.863	SYNONYMOUS_CODING CG2211 UPSTREAM msd5 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	15401173	X_15401173_SNP [dm3] X_15507140_SNP [dm6]	A	C	5.187e^-5	0.863	UPSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17733986	3R_17733986_DEL [dm3] 3R_21908264_DEL [dm6]	ATAAAA	A	5.258e^-5	0.863	INTERGENIC
2L	3318976	2L_3318976_SNP [dm3] 2L_3318976_SNP [dm6]	G	T	5.263e^-5	0.863	NON_SYNONYMOUS_CODING CG3326
3L	2560342	3L_2560342_SNP [dm3] 3L_2560342_SNP [dm6]	G	C	5.282e^-5	0.863	INTRON msn
X	5533199	X_5533199_INS [dm3] X_5639166_INS [dm6]	G	GG	5.424e^-5	0.863	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1437717	2R_1437717_SNP [dm3] 2R_5550212_SNP [dm6]	C	T	5.477e^-5	0.863	DOWNSTREAM CG30438 INTERGENIC
3R	21388450	3R_21388450_SNP [dm3] 3R_25562728_SNP [dm6]	C	T	5.540e^-5	0.863	INTRON msi
2R	1487987	2R_1487987_SNP [dm3] 2R_5600482_SNP [dm6]	A	G	5.590e^-5	0.863	INTERGENIC
3R	22978624	3R_22978624_SNP [dm3] 3R_27152902_SNP [dm6]	T	G	5.646e^-5	0.863	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12225351	2R_12225351_SNP [dm3] 2R_16337846_SNP [dm6]	G	A	5.678e^-5	0.863	UPSTREAM Hmgs INTRON Hmgs
3L	11842751	3L_11842751_SNP [dm3] 3L_11849651_SNP [dm6]	A	C	5.848e^-5	0.863	DOWNSTREAM CG44837 INTERGENIC
X	14941814	X_14941814_SNP [dm3] X_15047781_SNP [dm6]	T	C	5.853e^-5	0.863	INTRON hiw & 1 other
2L	11252738	2L_11252738_SNP [dm3] 2L_11252738_SNP [dm6]	C	T	5.862e^-5	0.863	INTRON ab
3L	4735005	3L_4735005_SNP [dm3] 3L_4735005_SNP [dm6]	G	T	5.942e^-5	0.863	INTRON RhoGEF64C
2R	12563416	2R_12563416_SNP [dm3] 2R_16675911_SNP [dm6]	C	A	5.974e^-5	0.863	INTRON CG30463
2L	8247550	2L_8247550_SNP [dm3] 2L_8247550_SNP [dm6]	G	A	5.974e^-5	0.863	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	13092424	2L_13092424_SNP [dm3] 2L_13092424_SNP [dm6]	G	T	5.996e^-5	0.863	INTERGENIC
3R	22754243	3R_22754243_SNP [dm3] 3R_26928521_SNP [dm6]	T	G	5.997e^-5	0.863	INTRON sda
X	15401150	X_15401150_SNP [dm3] X_15507117_SNP [dm6]	G	A	6.000e^-5	0.863	UPSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1527183	2R_1527183_SNP [dm3] 2R_5639678_SNP [dm6]	A	G	6.074e^-5	0.863	INTERGENIC	TF binding site mE1_TFBS_sens
3L	4941270	3L_4941270_SNP [dm3] 3L_4941270_SNP [dm6]	T	A	6.111e^-5	0.863	INTRON Con
3R	536152	3R_536152_DEL [dm3] 3R_4710430_DEL [dm6]	CTTAC	C	6.137e^-5	0.863	INTRON CG43427	TF binding site mE1_TFBS_cad
2R	7599983	2R_7599983_SNP [dm3] 2R_11712478_SNP [dm6]	C	T	6.173e^-5	0.863	UTR_5_PRIME pyr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	17933528	3R_17933528_SNP [dm3] 3R_22107806_SNP [dm6]	C	T	6.177e^-5	0.863	INTRON CG5778
2R	13905401	2R_13905401_SNP [dm3] 2R_18017896_SNP [dm6]	G	T	6.382e^-5	0.863	UPSTREAM CG5084 INTERGENIC
2R	10530007	2R_10530007_SNP [dm3] 2R_14642502_SNP [dm6]	C	G	6.401e^-5	0.863	INTERGENIC
2R	1527206	2R_1527206_SNP [dm3] 2R_5639701_SNP [dm6]	C	T	6.438e^-5	0.863	INTERGENIC	TF binding site mE1_TFBS_sens
3L	16573520	3L_16573520_SNP [dm3] 3L_16580420_SNP [dm6]	T	C	6.441e^-5	0.863	UTR_3_PRIME Smn UPSTREAM nxf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22936285	3R_22936285_SNP [dm3] 3R_27110563_SNP [dm6]	T	C	6.455e^-5	0.863	SYNONYMOUS_CODING gb EXON CR45209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13302573	3R_13302573_SNP [dm3] 3R_17476851_SNP [dm6]	G	A	6.466e^-5	0.863	INTRON Dscam3
2R	9494569	2R_9494569_SNP [dm3] 2R_13607064_SNP [dm6]	A	G	6.546e^-5	0.863	INTERGENIC
2L	3771095	2L_3771095_SNP [dm3] 2L_3771095_SNP [dm6]	T	C	6.581e^-5	0.863	UPSTREAM CR43704 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	4180561	2R_4180561_SNP [dm3] 2R_8293056_SNP [dm6]	A	T	6.592e^-5	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	17733995	3R_17733995_SNP [dm3] 3R_21908273_SNP [dm6]	T	C	6.607e^-5	0.863	INTERGENIC
2R	13715818	2R_13715818_SNP [dm3] 2R_17828313_SNP [dm6]	A	T	6.752e^-5	0.863	INTRON grh
3R	24209945	3R_24209945_SNP [dm3] 3R_28384223_SNP [dm6]	G	T	6.768e^-5	0.863	INTERGENIC
2R	13715813	2R_13715813_SNP [dm3] 2R_17828308_SNP [dm6]	C	T	6.770e^-5	0.863	INTRON grh
2R	13715828	2R_13715828_SNP [dm3] 2R_17828323_SNP [dm6]	A	T	6.770e^-5	0.863	SPLICE_SITE_REGION grh INTRON grh
3L	9321564	3L_9321564_SNP [dm3] 3L_9328464_SNP [dm6]	A	C	6.814e^-5	0.863	INTERGENIC
2R	17947862	2R_17947862_SNP [dm3] 2R_22060357_SNP [dm6]	A	G	6.910e^-5	0.87	SYNONYMOUS_CODING CG13501 UPSTREAM Snp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12586236	2R_12586236_SNP [dm3] 2R_16698731_SNP [dm6]	C	T	6.991e^-5	0.872	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18326326	3L_18326326_SNP [dm3] 3L_18333226_SNP [dm6]	A	G	7.081e^-5	0.872	INTERGENIC
3R	13302590	3R_13302590_SNP [dm3] 3R_17476868_SNP [dm6]	G	T	7.226e^-5	0.872	INTRON Dscam3
3L	15049261	3L_15049261_SNP [dm3] 3L_15056161_SNP [dm6]	C	T	7.259e^-5	0.872	DOWNSTREAM CG13463 INTRON Sytbeta
2R	1527133	2R_1527133_SNP [dm3] 2R_5639628_SNP [dm6]	A	C	7.270e^-5	0.872	INTERGENIC	TF binding site mE1_TFBS_sens
3L	14553051	3L_14553051_SNP [dm3] 3L_14559951_SNP [dm6]	A	T	7.294e^-5	0.872	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	7557974	2L_7557974_SNP [dm3] 2L_7557974_SNP [dm6]	C	G	7.351e^-5	0.872	INTRON RapGAP1
3L	3534889	3L_3534889_SNP [dm3] 3L_3534889_SNP [dm6]	A	G	7.361e^-5	0.872	INTRON Eip63E
3L	15049262	3L_15049262_SNP [dm3] 3L_15056162_SNP [dm6]	G	A	7.388e^-5	0.872	DOWNSTREAM CG13463 INTRON Sytbeta
2R	12232566	2R_12232566_SNP [dm3] 2R_16345061_SNP [dm6]	T	A	7.397e^-5	0.872	NON_SYNONYMOUS_CODING Nup62 UPSTREAM CG7997 DOWNSTREAM wcd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	21765102	3R_21765102_SNP [dm3] 3R_25939380_SNP [dm6]	T	C	7.509e^-5	0.877	INTRON CCAP-R
2L	10495837	2L_10495837_SNP [dm3] 2L_10495837_SNP [dm6]	T	C	7.559e^-5	0.877	INTRON Myo31DF
3L	10652413	3L_10652413_DEL [dm3] 3L_10659313_DEL [dm6]	GGGTTGC	G	7.581e^-5	0.877	INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	1527639	3R_1527639_SNP [dm3] 3R_5701917_SNP [dm6]	A	T	7.768e^-5	0.877	UPSTREAM plx INTRON plx	TF binding site BDTNP1_TFBS_dl
2L	4925781	2L_4925781_SNP [dm3] 2L_4925781_SNP [dm6]	T	G	7.856e^-5	0.877	INTRON hoe1
2L	4925784	2L_4925784_SNP [dm3] 2L_4925784_SNP [dm6]	T	G	7.856e^-5	0.877	INTRON hoe1
3R	24088575	3R_24088575_SNP [dm3] 3R_28262853_SNP [dm6]	C	T	7.993e^-5	0.877	NON_SYNONYMOUS_CODING CG43125
3L	10427525	3L_10427525_SNP [dm3] 3L_10434425_SNP [dm6]	A	G	8.022e^-5	0.877	UPSTREAM Ir67c INTERGENIC
2L	18425219	2L_18425219_SNP [dm3] 2L_18425219_SNP [dm6]	G	A	8.162e^-5	0.877	INTERGENIC
2L	14368785	2L_14368785_SNP [dm3] 2L_14368785_SNP [dm6]	T	A	8.193e^-5	0.877	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	10479020	3L_10479020_SNP [dm3] 3L_10485920_SNP [dm6]	T	G	8.216e^-5	0.877	INTRON A2bp1
2L	11252752	2L_11252752_SNP [dm3] 2L_11252752_SNP [dm6]	A	T	8.281e^-5	0.877	INTRON ab
2L	1618901	2L_1618901_SNP [dm3] 2L_1618901_SNP [dm6]	A	G	8.298e^-5	0.877	DOWNSTREAM CR44603 EXON CR44603	TF binding site mE1_TFBS_chinmo
3R	24803110	3R_24803110_SNP [dm3] 3R_28977388_SNP [dm6]	T	C	8.429e^-5	0.877	INTERGENIC
X	14945046	X_14945046_SNP [dm3] X_15051013_SNP [dm6]	T	C	8.441e^-5	0.877	SYNONYMOUS_CODING CG5541 INTRON hiw	TF binding site mE1_TFBS_sens
2L	3019898	2L_3019898_SNP [dm3] 2L_3019898_SNP [dm6]	C	T	8.538e^-5	0.877	SYNONYMOUS_CODING CG17264	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10191073	3L_10191073_SNP [dm3] 3L_10197973_SNP [dm6]	A	G	8.588e^-5	0.877	INTRON ect
2L	8247567	2L_8247567_SNP [dm3] 2L_8247567_SNP [dm6]	G	T	8.617e^-5	0.877	NON_SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	15049247	3L_15049247_DEL [dm3] 3L_15056147_DEL [dm6]	GG	G	8.703e^-5	0.877	DOWNSTREAM CG13463 INTRON Sytbeta
2R	4930137	2R_4930137_SNP [dm3] 2R_9042632_SNP [dm6]	A	T	8.705e^-5	0.877	UPSTREAM Ance-4 INTRON PPO2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11529529	3L_11529529_SNP [dm3] 3L_11536429_SNP [dm6]	A	G	8.822e^-5	0.877	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	6180099	3L_6180099_SNP [dm3] 3L_6186999_SNP [dm6]	T	C	8.837e^-5	0.877	SYNONYMOUS_CODING D19A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7843666	3L_7843666_SNP [dm3] 3L_7850566_SNP [dm6]	A	C	8.920e^-5	0.877	INTRON Pdp1	regulatory region REDfly_CRMs
2R	17579708	2R_17579708_SNP [dm3] 2R_21692203_SNP [dm6]	C	G	8.930e^-5	0.877	DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
2L	7704643	2L_7704643_SNP [dm3] 2L_7704643_SNP [dm6]	A	G	8.931e^-5	0.877	INTRON Tep3
2L	8344616	2L_8344616_SNP [dm3] 2L_8344616_SNP [dm6]	G	A	8.960e^-5	0.877	DOWNSTREAM CG14273 EXON CR45371
2R	14181157	2R_14181157_SNP [dm3] 2R_18293652_SNP [dm6]	T	C	9.030e^-5	0.877	UTR_5_PRIME CG14502 UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14066715	3R_14066715_SNP [dm3] 3R_18240993_SNP [dm6]	C	G	9.103e^-5	0.877	NON_SYNONYMOUS_CODING CG7156 UTR_3_PRIME CG7156	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6570651	2L_6570651_SNP [dm3] 2L_6570651_SNP [dm6]	T	C	9.177e^-5	0.877	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_hb
3L	2147606	3L_2147606_SNP [dm3] 3L_2147606_SNP [dm6]	G	T	9.191e^-5	0.877	INTRON zormin
2R	17948112	2R_17948112_SNP [dm3] 2R_22060607_SNP [dm6]	C	T	9.310e^-5	0.877	SYNONYMOUS_CODING CG13501 UTR_5_PRIME CG13501 UPSTREAM Snp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	12838620	3R_12838620_SNP [dm3] 3R_17012898_SNP [dm6]	G	T	9.326e^-5	0.877	DOWNSTREAM CG8907 INTERGENIC
3L	5870775	3L_5870775_SNP [dm3] 3L_5877675_SNP [dm6]	C	T	9.471e^-5	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13715826	2R_13715826_SNP [dm3] 2R_17828321_SNP [dm6]	C	T	9.523e^-5	0.877	INTRON grh
2R	12225367	2R_12225367_SNP [dm3] 2R_16337862_SNP [dm6]	T	G	9.529e^-5	0.877	UPSTREAM Hmgs INTRON Hmgs
2L	15929966	2L_15929966_SNP [dm3] 2L_15929966_SNP [dm6]	T	C	9.643e^-5	0.877	INTRON beat-Ib
3L	3461490	3L_3461490_SNP [dm3] 3L_3461490_SNP [dm6]	G	A	9.655e^-5	0.877	UPSTREAM eIF5B & 1 other INTRON armi	TF binding site BDTNP1_TFBS_dl
3L	2201876	3L_2201876_SNP [dm3] 3L_2201876_SNP [dm6]	C	T	9.681e^-5	0.877	INTERGENIC
X	14940695	X_14940695_INS [dm3] X_15046662_INS [dm6]	A	ACTTGATTCA	9.691e^-5	0.877	INTRON hiw & 1 other
2L	21775117	2L_21775117_SNP [dm3] 2L_21775117_SNP [dm6]	T	C	9.714e^-5	0.877	SYNONYMOUS_CODING CG31612	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12090449	3L_12090449_SNP [dm3] 3L_12097349_SNP [dm6]	T	G	9.714e^-5	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16290190	2R_16290190_SNP [dm3] 2R_20402685_SNP [dm6]	A	G	9.720e^-5	0.877	INTERGENIC
2R	17947787	2R_17947787_SNP [dm3] 2R_22060282_SNP [dm6]	G	T	9.724e^-5	0.877	SYNONYMOUS_CODING CG13501 UPSTREAM Snp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20758491	2L_20758491_SNP [dm3] 2L_20758491_SNP [dm6]	A	C	9.782e^-5	0.877	UTR_5_PRIME dia UPSTREAM CG9323 INTRON dia	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10427557	3L_10427557_SNP [dm3] 3L_10434457_SNP [dm6]	G	A	9.794e^-5	0.877	UPSTREAM Ir67c INTERGENIC
2L	3016734	2L_3016734_SNP [dm3] 2L_3016734_SNP [dm6]	A	C	9.865e^-5	0.877	UTR_3_PRIME CG17224 DOWNSTREAM CG17265
2L	20325904	2L_20325904_SNP [dm3] 2L_20325904_SNP [dm6]	T	C	9.871e^-5	0.877	INTRON spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8418053	2R_8418053_SNP [dm3] 2R_12530548_SNP [dm6]	C	T	9.896e^-5	0.877	INTRON fra	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	1041286	2L_1041286_SNP [dm3] 2L_1041286_SNP [dm6]	G	C	9.906e^-5	0.877	INTRON IA-2
2R	1442722	2R_1442722_DEL [dm3] 2R_5555217_DEL [dm6]	AC	A	9.942e^-5	0.877	INTERGENIC	transposable element FlyBase
3R	23521234	3R_23521234_SNP [dm3] 3R_27695512_SNP [dm6]	C	T	9.944e^-5	0.877	SYNONYMOUS_CODING CG43320 DOWNSTREAM CG43319 & 2 others	TF binding site mE1_TFBS_sens
3R	22936312	3R_22936312_SNP [dm3] 3R_27110590_SNP [dm6]	G	A	1.006e^-4	0.877	SYNONYMOUS_CODING gb EXON CR45209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9219983	3L_9219983_SNP [dm3] 3L_9226883_SNP [dm6]	A	G	1.019e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3940667	2L_3940667_SNP [dm3] 2L_3940667_SNP [dm6]	C	A	1.028e^-4	0.877	INTRON fred
3L	15916738	3L_15916738_DEL [dm3] 3L_15923638_DEL [dm6]	TT	T	1.035e^-4	0.877	INTRON sff
2L	8752169	2L_8752169_DEL [dm3] 2L_8752169_DEL [dm6]	TAGAACGATTGAAT...	T	1.039e^-4	0.877	UPSTREAM CG12438 & 1 other INTERGENIC
2L	19096929	2L_19096929_SNP [dm3] 2L_19096929_SNP [dm6]	G	T	1.046e^-4	0.877	INTRON Lim3	TF binding site mE1_TFBS_cad
2L	22164464	2L_22164464_SNP [dm3] 2L_22164464_SNP [dm6]	C	T	1.054e^-4	0.877	UTR_3_PRIME CG42748
3L	1879826	3L_1879826_SNP [dm3] 3L_1879826_SNP [dm6]	C	G	1.061e^-4	0.877	INTRON CG13937
2L	1041265	2L_1041265_SNP [dm3] 2L_1041265_SNP [dm6]	C	T	1.061e^-4	0.877	INTRON IA-2
3L	16454513	3L_16454513_SNP [dm3] 3L_16461413_SNP [dm6]	G	A	1.064e^-4	0.877	INTRON CG33158
2L	20680431	2L_20680431_SNP [dm3] 2L_20680431_SNP [dm6]	C	T	1.075e^-4	0.877	SYNONYMOUS_CODING Cen	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13790499	2R_13790499_SNP [dm3] 2R_17902994_SNP [dm6]	T	C	1.085e^-4	0.877	INTRON Elk
2R	9726711	2R_9726711_SNP [dm3] 2R_13839206_SNP [dm6]	C	T	1.091e^-4	0.877	SYNONYMOUS_CODING CG6347 UPSTREAM CG6357	TF binding site mE1_TFBS_cad
2L	1548073	2L_1548073_SNP [dm3] 2L_1548073_SNP [dm6]	C	T	1.107e^-4	0.877	INTERGENIC
3L	10652318	3L_10652318_SNP [dm3] 3L_10659218_SNP [dm6]	A	G	1.107e^-4	0.877	INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	24807527	3R_24807527_SNP [dm3] 3R_28981805_SNP [dm6]	G	A	1.115e^-4	0.877	INTERGENIC
3R	21754980	3R_21754980_SNP [dm3] 3R_25929258_SNP [dm6]	A	C	1.116e^-4	0.877	INTRON CCAP-R
2R	17591090	2R_17591090_SNP [dm3] 2R_21703585_SNP [dm6]	C	A	1.127e^-4	0.877	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3R	1527634	3R_1527634_SNP [dm3] 3R_5701912_SNP [dm6]	A	T	1.132e^-4	0.877	UPSTREAM plx INTRON plx	TF binding site BDTNP1_TFBS_dl
X	6958036	X_6958036_SNP [dm3] X_7064003_SNP [dm6]	A	C	1.136e^-4	0.877	INTRON CG12541
2R	13732944	2R_13732944_SNP [dm3] 2R_17845439_SNP [dm6]	A	G	1.140e^-4	0.877	INTRON olf186-F
2L	21954200	2L_21954200_SNP [dm3] 2L_21954200_SNP [dm6]	A	C	1.150e^-4	0.877	INTERGENIC	transposable element FlyBase
3L	8263712	3L_8263712_SNP [dm3] 3L_8270612_SNP [dm6]	A	C	1.154e^-4	0.877	INTRON Dscam4
2R	12901761	2R_12901761_SNP [dm3] 2R_17014256_SNP [dm6]	T	A	1.155e^-4	0.877	INTRON Ehbp1
3L	3534908	3L_3534908_SNP [dm3] 3L_3534908_SNP [dm6]	A	C	1.160e^-4	0.877	INTRON Eip63E
3R	22913844	3R_22913844_SNP [dm3] 3R_27088122_SNP [dm6]	G	A	1.162e^-4	0.877	UPSTREAM Cpr97Ea INTERGENIC
2L	18222437	2L_18222437_SNP [dm3] 2L_18222437_SNP [dm6]	C	A	1.168e^-4	0.877	INTRON CG42750
3L	2147320	3L_2147320_SNP [dm3] 3L_2147320_SNP [dm6]	C	G	1.170e^-4	0.877	INTRON zormin
3L	5570781	3L_5570781_DEL [dm3] 3L_5577681_DEL [dm6]	TTT	T	1.170e^-4	0.877	UPSTREAM Msr-110 INTERGENIC
3L	11529549	3L_11529549_SNP [dm3] 3L_11536449_SNP [dm6]	T	A	1.172e^-4	0.877	INTRON Mob2	TF binding site mE1_TFBS_HSA
3L	2444288	3L_2444288_SNP [dm3] 3L_2444288_SNP [dm6]	T	C	1.182e^-4	0.877	INTRON CG45186
3L	4994420	3L_4994420_SNP [dm3] 3L_4994420_SNP [dm6]	G	A	1.185e^-4	0.877	SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7702761	2L_7702761_DEL [dm3] 2L_7702761_DEL [dm6]	TT	T	1.207e^-4	0.877	UPSTREAM Tep3 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	13856224	3L_13856224_SNP [dm3] 3L_13863124_SNP [dm6]	T	G	1.215e^-4	0.877	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	13856225	3L_13856225_INS [dm3] 3L_13863125_INS [dm6]	T	TA	1.215e^-4	0.877	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5284800	3L_5284800_SNP [dm3] 3L_5291700_SNP [dm6]	C	G	1.216e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15804429	2L_15804429_DEL [dm3] 2L_15804429_DEL [dm6]	AATATAACGGTA...	A	1.221e^-4	0.877	INTERGENIC
2L	5330329	2L_5330329_SNP [dm3] 2L_5330329_SNP [dm6]	T	C	1.228e^-4	0.877	SYNONYMOUS_CODING TotM DOWNSTREAM fusl
2L	21013422	2L_21013422_SNP [dm3] 2L_21013422_SNP [dm6]	T	G	1.235e^-4	0.877	INTRON CG42238
2L	10301227	2L_10301227_SNP [dm3] 2L_10301227_SNP [dm6]	C	G	1.236e^-4	0.877	SYNONYMOUS_CODING CG13138 DOWNSTREAM nmd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13856060	3L_13856060_SNP [dm3] 3L_13862960_SNP [dm6]	T	A	1.236e^-4	0.877	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3L	13856075	3L_13856075_SNP [dm3] 3L_13862975_SNP [dm6]	A	G	1.236e^-4	0.877	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
X	16995038	X_16995038_SNP [dm3] X_17101005_SNP [dm6]	T	A	1.242e^-4	0.877	UPSTREAM CG4991 INTRON CG4991
2L	3331909	2L_3331909_SNP [dm3] 2L_3331909_SNP [dm6]	G	T	1.246e^-4	0.877	SYNONYMOUS_CODING CG3285 UPSTREAM CG15408	TF binding site mE1_TFBS_cad
3R	12838656	3R_12838656_SNP [dm3] 3R_17012934_SNP [dm6]	G	A	1.257e^-4	0.877	DOWNSTREAM CG8907 INTERGENIC
3R	16689485	3R_16689485_SNP [dm3] 3R_20863763_SNP [dm6]	A	G	1.258e^-4	0.877	INTRON CG3822	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5871366	3L_5871366_SNP [dm3] 3L_5878266_SNP [dm6]	G	A	1.259e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1879831	3L_1879831_SNP [dm3] 3L_1879831_SNP [dm6]	G	A	1.261e^-4	0.877	INTRON CG13937
2L	20339155	2L_20339155_INS [dm3] 2L_20339155_INS [dm6]	G	GTTTCTG	1.267e^-4	0.877	INTRON spir	TF binding site mE1_TFBS_inv
2L	5896588	2L_5896588_SNP [dm3] 2L_5896588_SNP [dm6]	G	A	1.267e^-4	0.877	INTERGENIC
2R	1442703	2R_1442703_SNP [dm3] 2R_5555198_SNP [dm6]	C	A	1.270e^-4	0.877	INTERGENIC	transposable element FlyBase
2R	1442705	2R_1442705_DEL [dm3] 2R_5555200_DEL [dm6]	CGGCAGGTTTGAC...	T	1.270e^-4	0.877	INTERGENIC	transposable element FlyBase
2R	7795696	2R_7795696_SNP [dm3] 2R_11908191_SNP [dm6]	A	G	1.271e^-4	0.877	INTRON CG13183
X	7315524	X_7315524_SNP [dm3] X_7421491_SNP [dm6]	A	G	1.273e^-4	0.877	NON_SYNONYMOUS_CODING CG9657
3L	16349938	3L_16349938_SNP [dm3] 3L_16356838_SNP [dm6]	T	A	1.274e^-4	0.877	UPSTREAM CG45057 INTRON CG45057
3L	5871324	3L_5871324_SNP [dm3] 3L_5878224_SNP [dm6]	G	T	1.282e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13790493	2R_13790493_SNP [dm3] 2R_17902988_SNP [dm6]	C	T	1.286e^-4	0.877	INTRON Elk
3R	21765230	3R_21765230_SNP [dm3] 3R_25939508_SNP [dm6]	A	C	1.291e^-4	0.877	INTRON CCAP-R
3R	56502	3R_56502_SNP [dm3] 3R_4230780_SNP [dm6]	G	A	1.307e^-4	0.877	UTR_3_PRIME CG14641
3L	17583933	3L_17583933_SNP [dm3] 3L_17590833_SNP [dm6]	T	A	1.312e^-4	0.877	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3319132	2L_3319132_SNP [dm3] 2L_3319132_SNP [dm6]	A	G	1.316e^-4	0.877	INTRON CG3326
3L	3870866	3L_3870866_SNP [dm3] 3L_3870866_SNP [dm6]	C	T	1.321e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14159305	2R_14159305_INS [dm3] 2R_18271800_INS [dm6]	A	ATA	1.322e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1527325	2R_1527325_DEL [dm3] 2R_5639820_DEL [dm6]	CCAAGGAAATTTGTGC...	C	1.325e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_sens
3L	17049522	3L_17049522_SNP [dm3] 3L_17056422_SNP [dm6]	A	C	1.328e^-4	0.877	DOWNSTREAM rogdi INTRON CG7724	TF binding site mE1_TFBS_cnc
X	14940264	X_14940264_SNP [dm3] X_15046231_SNP [dm6]	C	T	1.332e^-4	0.877	INTRON hiw & 1 other
3L	5871369	3L_5871369_SNP [dm3] 3L_5878269_SNP [dm6]	T	C	1.338e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8604102	3R_8604102_SNP [dm3] 3R_12778380_SNP [dm6]	T	C	1.340e^-4	0.877	UTR_5_PRIME beat-Vc
3R	9676783	3R_9676783_DEL [dm3] 3R_13851061_DEL [dm6]	GGAAAATTAAGCTATGCGAA...	CCC	1.367e^-4	0.877	INTERGENIC
2R	4108600	2R_4108600_SNP [dm3] 2R_8221095_SNP [dm6]	C	A	1.370e^-4	0.877	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	14945230	X_14945230_SNP [dm3] X_15051197_SNP [dm6]	C	G	1.387e^-4	0.877	UTR_3_PRIME CG5541 INTRON hiw
2R	2955936	2R_2955936_SNP [dm3] 2R_7068431_SNP [dm6]	C	A	1.394e^-4	0.877	UPSTREAM CG12836 INTRON CG12836	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7456605	3L_7456605_SNP [dm3] 3L_7463505_SNP [dm6]	T	G	1.399e^-4	0.877	INTERGENIC
2R	10530001	2R_10530001_SNP [dm3] 2R_14642496_SNP [dm6]	A	T	1.404e^-4	0.877	INTERGENIC
3L	9306026	3L_9306026_SNP [dm3] 3L_9312926_SNP [dm6]	C	T	1.404e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1576449	2L_1576449_SNP [dm3] 2L_1576449_SNP [dm6]	T	C	1.409e^-4	0.877	INTRON haf
3L	18103096	3L_18103096_SNP [dm3] 3L_18109996_SNP [dm6]	G	A	1.412e^-4	0.877	NON_SYNONYMOUS_CODING mus304 UPSTREAM CG5147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8830325	2L_8830325_SNP [dm3] 2L_8830325_SNP [dm6]	C	T	1.416e^-4	0.877	DOWNSTREAM SoxN INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16479723	3L_16479723_SNP [dm3] 3L_16486623_SNP [dm6]	C	T	1.417e^-4	0.877	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
X	11753220	X_11753220_SNP [dm3] X_11859187_SNP [dm6]	T	C	1.427e^-4	0.877	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	21013409	2L_21013409_SNP [dm3] 2L_21013409_SNP [dm6]	C	A	1.430e^-4	0.877	INTRON CG42238
2L	10886542	2L_10886542_SNP [dm3] 2L_10886542_SNP [dm6]	G	A	1.430e^-4	0.877	INTRON CR44490
3L	13856458	3L_13856458_SNP [dm3] 3L_13863358_SNP [dm6]	C	T	1.432e^-4	0.877	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12149958	2R_12149958_SNP [dm3] 2R_16262453_SNP [dm6]	G	A	1.435e^-4	0.877	SYNONYMOUS_CODING fidipidine
2L	16372971	2L_16372971_SNP [dm3] 2L_16372971_SNP [dm6]	C	T	1.444e^-4	0.877	INTERGENIC
3L	7228207	3L_7228207_SNP [dm3] 3L_7235107_SNP [dm6]	C	G	1.444e^-4	0.877	SYNONYMOUS_CODING CG14826
3L	15841618	3L_15841618_SNP [dm3] 3L_15848518_SNP [dm6]	C	T	1.448e^-4	0.877	DOWNSTREAM pHCl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10166232	3L_10166232_SNP [dm3] 3L_10173132_SNP [dm6]	G	A	1.449e^-4	0.877	INTRON dpr10
3L	13829721	3L_13829721_SNP [dm3] 3L_13836621_SNP [dm6]	C	T	1.455e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	1658329	3R_1658329_SNP [dm3] 3R_5832607_SNP [dm6]	C	A	1.457e^-4	0.877	DOWNSTREAM glob3 INTRON CG1208	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1527310	2R_1527310_SNP [dm3] 2R_5639805_SNP [dm6]	G	A	1.495e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_sens
3L	16903887	3L_16903887_SNP [dm3] 3L_16910787_SNP [dm6]	A	G	1.502e^-4	0.877	UPSTREAM Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
2R	16399474	2R_16399474_SNP [dm3] 2R_20511969_SNP [dm6]	C	A	1.508e^-4	0.877	DOWNSTREAM CR44648 & 1 other EXON CR44649
2R	16399920	2R_16399920_SNP [dm3] 2R_20512415_SNP [dm6]	C	T	1.509e^-4	0.877	DOWNSTREAM CR44648 & 2 others INTERGENIC
X	5788962	X_5788962_SNP [dm3] X_5894929_SNP [dm6]	G	A	1.511e^-4	0.877	INTRON CR45668	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26532663	3R_26532663_SNP [dm3] 3R_30706941_SNP [dm6]	T	A	1.520e^-4	0.877	UPSTREAM CG31010 INTERGENIC
3L	464743	3L_464743_SNP [dm3] 3L_464743_SNP [dm6]	G	T	1.531e^-4	0.877	INTRON klar
3L	16386224	3L_16386224_SNP [dm3] 3L_16393124_SNP [dm6]	T	A	1.545e^-4	0.877	INTRON CG44836	TF binding site mE1_TFBS_HSA
3L	15535620	3L_15535620_SNP [dm3] 3L_15542520_SNP [dm6]	T	A	1.548e^-4	0.877	INTRON CrebA
2L	1433838	2L_1433838_SNP [dm3] 2L_1433838_SNP [dm6]	T	A	1.548e^-4	0.877	DOWNSTREAM snRNA:U3:22A INTERGENIC	TF binding site mE1_TFBS_cad
2R	1527141	2R_1527141_DEL [dm3] 2R_5639636_DEL [dm6]	TT	T	1.553e^-4	0.877	INTERGENIC	TF binding site mE1_TFBS_sens
X	12446556	X_12446556_DEL [dm3] X_12552523_DEL [dm6]	AA	A	1.563e^-4	0.877	UPSTREAM Cpr11B INTRON CG43921
2R	16399066	2R_16399066_SNP [dm3] 2R_20511561_SNP [dm6]	T	C	1.564e^-4	0.877	UPSTREAM CR44649 EXON CR44648	TF binding site BDTNP1_TFBS_dl
2L	5592861	2L_5592861_SNP [dm3] 2L_5592861_SNP [dm6]	C	G	1.570e^-4	0.877	INTERGENIC
2R	13692426	2R_13692426_SNP [dm3] 2R_17804921_SNP [dm6]	C	A	1.572e^-4	0.877	INTRON grh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10530042	2R_10530042_SNP [dm3] 2R_14642537_SNP [dm6]	C	T	1.577e^-4	0.877	INTERGENIC
2L	7593150	2L_7593150_SNP [dm3] 2L_7593150_SNP [dm6]	G	A	1.580e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20832978	2L_20832978_SNP [dm3] 2L_20832978_SNP [dm6]	C	T	1.581e^-4	0.877	SYNONYMOUS_CODING Oseg5 DOWNSTREAM CG31674	TF binding site mE1_TFBS_chinmo
3R	17393677	3R_17393677_SNP [dm3] 3R_21567955_SNP [dm6]	A	C	1.597e^-4	0.877	INTRON CG15498
2L	20126022	2L_20126022_SNP [dm3] 2L_20126022_SNP [dm6]	A	G	1.603e^-4	0.877	INTERGENIC
2L	2038746	2L_2038746_SNP [dm3] 2L_2038746_SNP [dm6]	A	G	1.613e^-4	0.877	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	9725774	2L_9725774_SNP [dm3] 2L_9725774_SNP [dm6]	T	A	1.617e^-4	0.877	INTRON Nckx30C
3L	15946004	3L_15946004_SNP [dm3] 3L_15952904_SNP [dm6]	A	G	1.619e^-4	0.877	UTR_5_PRIME Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	17947321	2R_17947321_SNP [dm3] 2R_22059816_SNP [dm6]	T	C	1.624e^-4	0.877	SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo
3L	13131722	3L_13131722_SNP [dm3] 3L_13138622_SNP [dm6]	T	C	1.625e^-4	0.877	INTERGENIC
3L	9561377	3L_9561377_SNP [dm3] 3L_9568277_SNP [dm6]	A	G	1.629e^-4	0.877	INTRON CG42673
2L	18992322	2L_18992322_SNP [dm3] 2L_18992322_SNP [dm6]	G	T	1.634e^-4	0.877	UTR_3_PRIME CG15169	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7009023	3L_7009023_SNP [dm3] 3L_7015923_SNP [dm6]	A	C	1.638e^-4	0.877	INTRON Mp
3L	5872652	3L_5872652_SNP [dm3] 3L_5879552_SNP [dm6]	A	C	1.638e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2129141	3L_2129141_SNP [dm3] 3L_2129141_SNP [dm6]	C	T	1.644e^-4	0.877	SYNONYMOUS_CODING zormin
3L	14583070	3L_14583070_SNP [dm3] 3L_14589970_SNP [dm6]	T	C	1.650e^-4	0.877	INTRON HGTX
3L	5875067	3L_5875067_SNP [dm3] 3L_5881967_SNP [dm6]	C	G	1.651e^-4	0.877	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	16837406	3L_16837406_SNP [dm3] 3L_16844306_SNP [dm6]	T	C	1.653e^-4	0.877	SYNONYMOUS_CODING TSG101 DOWNSTREAM CG9669	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	13378808	3L_13378808_SNP [dm3] 3L_13385708_SNP [dm6]	G	C	1.657e^-4	0.877	SYNONYMOUS_CODING CG14110 DOWNSTREAM CG10171
2R	546561	2R_546561_SNP [dm3] 2R_4659056_SNP [dm6]	T	A	1.662e^-4	0.877	INTERGENIC
3R	22051644	3R_22051644_SNP [dm3] 3R_26225922_SNP [dm6]	G	C	1.679e^-4	0.877	INTERGENIC
2R	11776186	2R_11776186_SNP [dm3] 2R_15888681_SNP [dm6]	G	A	1.684e^-4	0.877	INTRON sli	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10316477	2L_10316477_SNP [dm3] 2L_10316477_SNP [dm6]	G	A	1.690e^-4	0.877	SYNONYMOUS_CODING CG4972
2L	3739734	2L_3739734_SNP [dm3] 2L_3739734_SNP [dm6]	C	T	1.693e^-4	0.877	INTRON CG10019
3L	12653095	3L_12653095_SNP [dm3] 3L_12659995_SNP [dm6]	G	A	1.698e^-4	0.877	EXON CR44553
3R	23489453	3R_23489453_SNP [dm3] 3R_27663731_SNP [dm6]	T	C	1.702e^-4	0.877	INTRON unc80	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2L	15944765	2L_15944765_SNP [dm3] 2L_15944765_SNP [dm6]	T	C	1.702e^-4	0.877	INTRON beat-Ib
2R	9494554	2R_9494554_SNP [dm3] 2R_13607049_SNP [dm6]	C	T	1.710e^-4	0.877	INTERGENIC
3R	12922333	3R_12922333_SNP [dm3] 3R_17096611_SNP [dm6]	C	T	1.718e^-4	0.877	INTRON cher
3L	14583048	3L_14583048_SNP [dm3] 3L_14589948_SNP [dm6]	C	T	1.727e^-4	0.877	INTRON HGTX
2R	16400226	2R_16400226_SNP [dm3] 2R_20512721_SNP [dm6]	T	C	1.730e^-4	0.877	UTR_3_PRIME CG13426 DOWNSTREAM CR44649
2L	22182077	2L_22182077_SNP [dm3] 2L_22182077_SNP [dm6]	T	C	1.731e^-4	0.877	INTRON CG3635
2L	7521634	2L_7521634_SNP [dm3] 2L_7521634_SNP [dm6]	T	C	1.732e^-4	0.877	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	16479719	3L_16479719_SNP [dm3] 3L_16486619_SNP [dm6]	A	T	1.733e^-4	0.877	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
2R	15877252	2R_15877252_SNP [dm3] 2R_19989747_SNP [dm6]	A	C	1.748e^-4	0.877	INTERGENIC
2L	12506838	2L_12506838_SNP [dm3] 2L_12506838_SNP [dm6]	A	T	1.757e^-4	0.877	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7849084	2L_7849084_SNP [dm3] 2L_7849084_SNP [dm6]	G	A	1.759e^-4	0.877	SYNONYMOUS_CODING CG14535	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	6398605	3L_6398605_SNP [dm3] 3L_6405505_SNP [dm6]	A	C	1.761e^-4	0.877	INTRON CG42747
2L	18993683	2L_18993683_SNP [dm3] 2L_18993683_SNP [dm6]	G	A	1.769e^-4	0.877	UTR_3_PRIME CG10650	TF binding site mE1_TFBS_cad
3L	16386295	3L_16386295_SNP [dm3] 3L_16393195_SNP [dm6]	G	A	1.771e^-4	0.877	INTRON CG44836	TF binding site mE1_TFBS_HSA
3R	12832324	3R_12832324_SNP [dm3] 3R_17006602_SNP [dm6]	C	T	1.774e^-4	0.877	SYNONYMOUS_CODING Irc
2R	1527098	2R_1527098_SNP [dm3] 2R_5639593_SNP [dm6]	T	C	1.777e^-4	0.877	INTERGENIC
2R	12586262	2R_12586262_SNP [dm3] 2R_16698757_SNP [dm6]	A	C	1.783e^-4	0.877	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5871364	3L_5871364_SNP [dm3] 3L_5878264_SNP [dm6]	T	A	1.787e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11791350	3L_11791350_SNP [dm3] 3L_11798250_SNP [dm6]	T	C	1.788e^-4	0.877	NON_SYNONYMOUS_CODING Klp68D DOWNSTREAM CG10361	TF binding site mE1_TFBS_chinmo
2L	21954222	2L_21954222_SNP [dm3] 2L_21954222_SNP [dm6]	C	A	1.789e^-4	0.877	INTERGENIC
3L	11842602	3L_11842602_SNP [dm3] 3L_11849502_SNP [dm6]	C	T	1.789e^-4	0.877	INTERGENIC
3L	4662038	3L_4662038_SNP [dm3] 3L_4662038_SNP [dm6]	C	T	1.796e^-4	0.877	INTRON axo
2R	6663643	2R_6663643_SNP [dm3] 2R_10776138_SNP [dm6]	G	T	1.809e^-4	0.877	INTRON CG33144
3R	3624692	3R_3624692_SNP [dm3] 3R_7798970_SNP [dm6]	A	G	1.812e^-4	0.877	UPSTREAM CG18744 DOWNSTREAM CG3014 INTERGENIC
2L	3319493	2L_3319493_SNP [dm3] 2L_3319493_SNP [dm6]	C	T	1.815e^-4	0.877	NON_SYNONYMOUS_CODING CG3326 UPSTREAM CG8837	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	9854974	2L_9854974_SNP [dm3] 2L_9854974_SNP [dm6]	C	T	1.817e^-4	0.877	INTRON nAChRalpha6
2L	13679539	2L_13679539_SNP [dm3] 2L_13679539_SNP [dm6]	G	A	1.819e^-4	0.877	INTRON CG31814
2L	2312678	2L_2312678_SNP [dm3] 2L_2312678_SNP [dm6]	A	T	1.827e^-4	0.877	INTRON CG9967 & 1 other
2L	12834893	2L_12834893_SNP [dm3] 2L_12834893_SNP [dm6]	C	A	1.828e^-4	0.877	INTERGENIC
X	11140356	X_11140356_SNP [dm3] X_11246323_SNP [dm6]	T	C	1.831e^-4	0.877	NON_SYNONYMOUS_CODING CG44422 INTRON CG44422
3L	3538050	3L_3538050_SNP [dm3] 3L_3538050_SNP [dm6]	A	G	1.835e^-4	0.877	INTRON Eip63E
3R	17393634	3R_17393634_SNP [dm3] 3R_21567912_SNP [dm6]	G	T	1.836e^-4	0.877	INTRON CG15498
X	16090945	X_16090945_SNP [dm3] X_16196912_SNP [dm6]	T	C	1.839e^-4	0.877	INTERGENIC
3L	6180744	3L_6180744_SNP [dm3] 3L_6187644_SNP [dm6]	A	C	1.841e^-4	0.877	SYNONYMOUS_CODING D19A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1880042	3L_1880042_DEL [dm3] 3L_1880042_DEL [dm6]	TT	T	1.843e^-4	0.877	INTRON CG13937
2L	7042260	2L_7042260_SNP [dm3] 2L_7042260_SNP [dm6]	C	T	1.851e^-4	0.877	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21765170	3R_21765170_SNP [dm3] 3R_25939448_SNP [dm6]	G	A	1.854e^-4	0.877	INTRON CCAP-R
2L	7464596	2L_7464596_SNP [dm3] 2L_7464596_SNP [dm6]	T	A	1.861e^-4	0.877	INTERGENIC
3L	4821076	3L_4821076_SNP [dm3] 3L_4821076_SNP [dm6]	C	T	1.863e^-4	0.877	INTRON Dhc64C
2R	13715825	2R_13715825_SNP [dm3] 2R_17828320_SNP [dm6]	T	C	1.866e^-4	0.877	INTRON grh
2L	2721497	2L_2721497_SNP [dm3] 2L_2721497_SNP [dm6]	G	T	1.874e^-4	0.877	INTERGENIC
2L	7925670	2L_7925670_SNP [dm3] 2L_7925670_SNP [dm6]	T	G	1.880e^-4	0.877	INTRON Snoo
2L	7305494	2L_7305494_SNP [dm3] 2L_7305494_SNP [dm6]	G	T	1.885e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5570790	3L_5570790_SNP [dm3] 3L_5577690_SNP [dm6]	T	A	1.885e^-4	0.877	UPSTREAM Msr-110 INTERGENIC
2L	7042268	2L_7042268_SNP [dm3] 2L_7042268_SNP [dm6]	C	A	1.887e^-4	0.877	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	19100830	2L_19100830_MNP [dm3] 2L_19100830_MNP [dm6]	AGCT	GATG	1.892e^-4	0.877	INTRON Lim3
3L	1879968	3L_1879968_SNP [dm3] 3L_1879968_SNP [dm6]	C	T	1.893e^-4	0.877	INTRON CG13937
3L	2166926	3L_2166926_SNP [dm3] 3L_2166926_SNP [dm6]	G	A	1.894e^-4	0.877	DOWNSTREAM CG15879 INTERGENIC
X	5694406	X_5694406_SNP [dm3] X_5800373_SNP [dm6]	G	T	1.914e^-4	0.877	INTERGENIC
3R	13668747	3R_13668747_SNP [dm3] 3R_17843025_SNP [dm6]	G	A	1.915e^-4	0.877	INTRON tinc
X	14332890	X_14332890_INS [dm3] X_14438857_INS [dm6]	C	CTT	1.934e^-4	0.877	INTRON dpr8
2R	1440222	2R_1440222_SNP [dm3] 2R_5552717_SNP [dm6]	T	G	1.946e^-4	0.877	INTERGENIC	transposable element FlyBase
3L	15443696	3L_15443696_SNP [dm3] 3L_15450596_SNP [dm6]	T	A	1.947e^-4	0.877	INTERGENIC
3L	4755656	3L_4755656_SNP [dm3] 3L_4755656_SNP [dm6]	C	T	1.957e^-4	0.877	INTRON RhoGEF64C EXON CR43881
3R	17393686	3R_17393686_SNP [dm3] 3R_21567964_SNP [dm6]	G	T	1.962e^-4	0.877	INTRON CG15498
3R	26566472	3R_26566472_SNP [dm3] 3R_30740750_SNP [dm6]	T	A	1.974e^-4	0.877	INTERGENIC
X	20510272	X_20510272_SNP [dm3] X_20639245_SNP [dm6]	C	T	1.976e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	331436	3L_331436_SNP [dm3] 3L_331436_SNP [dm6]	A	C	1.976e^-4	0.877	SYNONYMOUS_CODING mthl9 INTRON Ptpmeg	TF binding site mE1_TFBS_HSA
3L	9128712	3L_9128712_SNP [dm3] 3L_9135612_SNP [dm6]	C	T	1.979e^-4	0.877	UTR_3_PRIME Dhpr DOWNSTREAM Use1	TF binding site BDTNP1_TFBS_dl
3R	22991483	3R_22991483_SNP [dm3] 3R_27165761_SNP [dm6]	T	G	1.983e^-4	0.877	UTR_5_PRIME spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2721499	2L_2721499_SNP [dm3] 2L_2721499_SNP [dm6]	C	T	1.987e^-4	0.877	INTERGENIC
X	7981510	X_7981510_INS [dm3] X_8087477_INS [dm6]	T	TT	1.988e^-4	0.877	UPSTREAM CG2256 DOWNSTREAM Ubc-E2H INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7400095	3L_7400095_SNP [dm3] 3L_7406995_SNP [dm6]	G	A	1.988e^-4	0.877	DOWNSTREAM pncr015:3L INTERGENIC
3L	1881725	3L_1881725_SNP [dm3] 3L_1881725_SNP [dm6]	C	T	1.993e^-4	0.877	INTRON CG13937
3L	16737060	3L_16737060_SNP [dm3] 3L_16743960_SNP [dm6]	T	G	1.996e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	7925669	2L_7925669_SNP [dm3] 2L_7925669_SNP [dm6]	C	G	1.998e^-4	0.877	INTRON Snoo
X	5325643	X_5325643_SNP [dm3] X_5431610_SNP [dm6]	A	C	2.003e^-4	0.877	NON_SYNONYMOUS_CODING CG15784	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4736929	3L_4736929_SNP [dm3] 3L_4736929_SNP [dm6]	T	C	2.007e^-4	0.877	INTRON RhoGEF64C
3L	11338507	3L_11338507_SNP [dm3] 3L_11345407_SNP [dm6]	G	T	2.009e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	4662039	3L_4662039_SNP [dm3] 3L_4662039_SNP [dm6]	G	T	2.011e^-4	0.877	INTRON axo
3L	17583294	3L_17583294_SNP [dm3] 3L_17590194_SNP [dm6]	T	G	2.012e^-4	0.877	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5524275	2R_5524275_SNP [dm3] 2R_9636770_SNP [dm6]	G	T	2.019e^-4	0.877	DOWNSTREAM CR44070 INTRON Mmp2
3R	27011807	3R_27011807_SNP [dm3] 3R_31186085_SNP [dm6]	A	T	2.023e^-4	0.877	INTRON mesh
3L	10361498	3L_10361498_SNP [dm3] 3L_10368398_SNP [dm6]	T	C	2.024e^-4	0.877	DOWNSTREAM CR44327 INTERGENIC
2L	7521752	2L_7521752_SNP [dm3] 2L_7521752_SNP [dm6]	T	A	2.027e^-4	0.877	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14367130	2L_14367130_SNP [dm3] 2L_14367130_SNP [dm6]	G	T	2.027e^-4	0.877	DOWNSTREAM spel1 INTERGENIC
3R	19195209	3R_19195209_SNP [dm3] 3R_23369487_SNP [dm6]	A	G	2.028e^-4	0.877	INTERGENIC
2L	11455070	2L_11455070_SNP [dm3] 2L_11455070_SNP [dm6]	T	A	2.039e^-4	0.877	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8219439	2L_8219439_SNP [dm3] 2L_8219439_SNP [dm6]	T	C	2.047e^-4	0.877	NON_SYNONYMOUS_CODING Snx6
2L	8239795	2L_8239795_SNP [dm3] 2L_8239795_SNP [dm6]	T	A	2.050e^-4	0.877	UTR_5_PRIME Pvr UPSTREAM Pvr DOWNSTREAM Spn28F	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	1623663	2R_1623663_SNP [dm3] 2R_5736158_SNP [dm6]	G	C	2.058e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15203149	2L_15203149_SNP [dm3] 2L_15203149_SNP [dm6]	G	A	2.064e^-4	0.877	INTRON CR43357
2L	13601729	2L_13601729_SNP [dm3] 2L_13601729_SNP [dm6]	C	T	2.067e^-4	0.877	INTRON kuz
X	7318660	X_7318660_SNP [dm3] X_7424627_SNP [dm6]	A	G	2.067e^-4	0.877	SYNONYMOUS_CODING CG15036 DOWNSTREAM CG32726
X	12446560	X_12446560_SNP [dm3] X_12552527_SNP [dm6]	T	C	2.069e^-4	0.877	UPSTREAM Cpr11B INTRON CG43921
3R	15551876	3R_15551876_SNP [dm3] 3R_19726154_SNP [dm6]	C	T	2.069e^-4	0.877	INTERGENIC
2R	13184356	2R_13184356_SNP [dm3] 2R_17296851_SNP [dm6]	C	A	2.073e^-4	0.877	INTRON mbl
2R	15877295	2R_15877295_SNP [dm3] 2R_19989790_SNP [dm6]	G	A	2.074e^-4	0.877	INTERGENIC
3R	13324234	3R_13324234_SNP [dm3] 3R_17498512_SNP [dm6]	A	G	2.075e^-4	0.877	UTR_5_PRIME Dscam3
3L	11791393	3L_11791393_SNP [dm3] 3L_11798293_SNP [dm6]	A	G	2.093e^-4	0.877	SYNONYMOUS_CODING Klp68D DOWNSTREAM CG10361	TF binding site mE1_TFBS_chinmo
2L	20689873	2L_20689873_SNP [dm3] 2L_20689873_SNP [dm6]	C	T	2.094e^-4	0.877	INTRON Hr38	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5628586	3L_5628586_DEL [dm3] 3L_5635486_DEL [dm6]	TAACTACCCT	T	2.098e^-4	0.877	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15535674	3L_15535674_SNP [dm3] 3L_15542574_SNP [dm6]	C	T	2.100e^-4	0.877	INTRON CrebA
3R	23021575	3R_23021575_SNP [dm3] 3R_27195853_SNP [dm6]	T	C	2.102e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs
X	15401121	X_15401121_SNP [dm3] X_15507088_SNP [dm6]	A	C	2.105e^-4	0.877	UPSTREAM mir-283 INTRON Gmap	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25428667	3R_25428667_SNP [dm3] 3R_29602945_SNP [dm6]	T	C	2.109e^-4	0.877	INTRON alph
2L	7446268	2L_7446268_SNP [dm3] 2L_7446268_SNP [dm6]	T	A	2.110e^-4	0.877	SYNONYMOUS_CODING santa-maria DOWNSTREAM CG5973
3L	6445008	3L_6445008_SNP [dm3] 3L_6451908_SNP [dm6]	A	G	2.110e^-4	0.877	INTRON CG42747
3R	24083659	3R_24083659_SNP [dm3] 3R_28257937_SNP [dm6]	A	G	2.111e^-4	0.877	INTERGENIC
3R	16005978	3R_16005978_SNP [dm3] 3R_20180256_SNP [dm6]	T	G	2.114e^-4	0.877	INTERGENIC
2R	12114321	2R_12114321_SNP [dm3] 2R_16226816_SNP [dm6]	A	G	2.119e^-4	0.877	UPSTREAM CG15706 INTRON CG15706 & 1 other
2R	15107717	2R_15107717_SNP [dm3] 2R_19220212_SNP [dm6]	G	T	2.129e^-4	0.877	INTRON hppy
3R	25319246	3R_25319246_SNP [dm3] 3R_29493524_SNP [dm6]	G	A	2.129e^-4	0.877	UPSTREAM Diedel & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4920159	3L_4920159_SNP [dm3] 3L_4920159_SNP [dm6]	T	C	2.136e^-4	0.877	UTR_3_PRIME Rh50 DOWNSTREAM Rh50	TF binding site mE1_TFBS_HSA
X	8390313	X_8390313_SNP [dm3] X_8496280_SNP [dm6]	A	T	2.141e^-4	0.877	INTRON CG33181
X	14333003	X_14333003_SNP [dm3] X_14438970_SNP [dm6]	G	C	2.141e^-4	0.877	INTRON dpr8
X	7532629	X_7532629_SNP [dm3] X_7638596_SNP [dm6]	C	G	2.144e^-4	0.877	INTRON ct
3R	20147263	3R_20147263_SNP [dm3] 3R_24321541_SNP [dm6]	A	G	2.161e^-4	0.877	SYNONYMOUS_CODING BRWD3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	15408385	3R_15408385_SNP [dm3] 3R_19582663_SNP [dm6]	A	T	2.162e^-4	0.877	INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10166222	3L_10166222_DEL [dm3] 3L_10173122_DEL [dm6]	TTTC	T	2.168e^-4	0.877	INTRON dpr10
3L	13856077	3L_13856077_SNP [dm3] 3L_13862977_SNP [dm6]	T	C	2.174e^-4	0.877	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
2L	7847376	2L_7847376_SNP [dm3] 2L_7847376_SNP [dm6]	C	A	2.178e^-4	0.877	NON_SYNONYMOUS_CODING CG14535
3R	9677552	3R_9677552_SNP [dm3] 3R_13851830_SNP [dm6]	G	A	2.180e^-4	0.877	INTERGENIC
X	11753229	X_11753229_INS [dm3] X_11859196_INS [dm6]	C	CA	2.181e^-4	0.877	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	22750312	3R_22750312_SNP [dm3] 3R_26924590_SNP [dm6]	A	C	2.181e^-4	0.877	INTRON sda
X	10272513	X_10272513_SNP [dm3] X_10378480_SNP [dm6]	T	C	2.190e^-4	0.877	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
3R	14453891	3R_14453891_SNP [dm3] 3R_18628169_SNP [dm6]	C	A	2.194e^-4	0.877	DOWNSTREAM tRNA:CR31228 & 1 other INTRON qin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20041483	2L_20041483_DEL [dm3] 2L_20041483_DEL [dm6]	TCCATTCGGATCCACTTGCG...	T	2.196e^-4	0.877	INTRON sNPF
2L	5330032	2L_5330032_SNP [dm3] 2L_5330032_SNP [dm6]	C	T	2.197e^-4	0.877	SYNONYMOUS_CODING TotM DOWNSTREAM fusl
3L	11842704	3L_11842704_SNP [dm3] 3L_11849604_SNP [dm6]	C	T	2.199e^-4	0.877	INTERGENIC
2L	21942647	2L_21942647_SNP [dm3] 2L_21942647_SNP [dm6]	G	T	2.203e^-4	0.877	INTERGENIC
3R	6432763	3R_6432763_SNP [dm3] 3R_10607041_SNP [dm6]	G	T	2.204e^-4	0.877	INTRON hth
3L	4815569	3L_4815569_SNP [dm3] 3L_4815569_SNP [dm6]	G	A	2.206e^-4	0.877	SYNONYMOUS_CODING Dhc64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3L	8507781	3L_8507781_SNP [dm3] 3L_8514681_SNP [dm6]	C	G	2.209e^-4	0.877	INTRON CG6765 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7960167	3R_7960167_SNP [dm3] 3R_12134445_SNP [dm6]	G	A	2.219e^-4	0.877	INTERGENIC
3L	4668288	3L_4668288_SNP [dm3] 3L_4668288_SNP [dm6]	G	C	2.221e^-4	0.877	UPSTREAM CG32236 INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13766319	3L_13766319_SNP [dm3] 3L_13773219_SNP [dm6]	C	T	2.221e^-4	0.877	INTRON bru-3
2R	15120389	2R_15120389_SNP [dm3] 2R_19232884_SNP [dm6]	A	T	2.222e^-4	0.877	INTRON cora	TF binding site mE1_TFBS_HSA
3R	17911720	3R_17911720_SNP [dm3] 3R_22085998_SNP [dm6]	G	A	2.223e^-4	0.877	INTRON CG5778
3L	11471547	3L_11471547_SNP [dm3] 3L_11478447_SNP [dm6]	T	C	2.223e^-4	0.877	INTERGENIC
2R	4122424	2R_4122424_SNP [dm3] 2R_8234919_SNP [dm6]	G	A	2.226e^-4	0.877	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17947897	2R_17947897_SNP [dm3] 2R_22060392_SNP [dm6]	G	A	2.227e^-4	0.877	SYNONYMOUS_CODING CG13501 UPSTREAM Snp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25428467	3R_25428467_SNP [dm3] 3R_29602745_SNP [dm6]	G	T	2.229e^-4	0.877	INTRON alph
2L	20774001	2L_20774001_SNP [dm3] 2L_20774001_SNP [dm6]	A	G	2.236e^-4	0.877	INTRON cad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12829558	3L_12829558_SNP [dm3] 3L_12836458_SNP [dm6]	G	C	2.242e^-4	0.877	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	17721034	2L_17721034_SNP [dm3] 2L_17721034_SNP [dm6]	A	G	2.247e^-4	0.877	SYNONYMOUS_CODING CadN
2R	3213123	2R_3213123_SNP [dm3] 2R_7325618_SNP [dm6]	T	A	2.249e^-4	0.877	UPSTREAM CR45129 INTRON Dscam1
3L	3870865	3L_3870865_SNP [dm3] 3L_3870865_SNP [dm6]	C	T	2.256e^-4	0.877	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7567871	2L_7567871_SNP [dm3] 2L_7567871_SNP [dm6]	A	C	2.259e^-4	0.877	INTRON RapGAP1
2R	16399817	2R_16399817_SNP [dm3] 2R_20512312_SNP [dm6]	G	A	2.262e^-4	0.877	DOWNSTREAM CR44648 & 2 others INTERGENIC
2R	16176465	2R_16176465_SNP [dm3] 2R_20288960_SNP [dm6]	C	T	2.262e^-4	0.877	SYNONYMOUS_CODING Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199	TF binding site mE1_TFBS_chinmo
3L	12671607	3L_12671607_INS [dm3] 3L_12678507_INS [dm6]	C	CTC	2.263e^-4	0.877	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17137852	2L_17137852_SNP [dm3] 2L_17137852_SNP [dm6]	A	T	2.265e^-4	0.877	INTRON beat-IIIa & 1 other
2L	16380509	2L_16380509_SNP [dm3] 2L_16380509_SNP [dm6]	G	A	2.267e^-4	0.877	INTERGENIC
2L	11252179	2L_11252179_SNP [dm3] 2L_11252179_SNP [dm6]	G	T	2.282e^-4	0.88	INTRON ab	TF binding site BDTNP1_TFBS_twi
X	4780687	X_4780687_SNP [dm3] X_4886654_SNP [dm6]	A	G	2.303e^-4	0.88	INTRON CG42594
2R	6663608	2R_6663608_SNP [dm3] 2R_10776103_SNP [dm6]	G	T	2.304e^-4	0.88	INTRON CG33144
3R	23398952	3R_23398952_DEL [dm3] 3R_27573230_DEL [dm6]	ATACAA	A	2.304e^-4	0.88	INTRON wdb
2L	5329822	2L_5329822_SNP [dm3] 2L_5329822_SNP [dm6]	A	T	2.315e^-4	0.88	UPSTREAM CG14022 & 1 other DOWNSTREAM fusl INTERGENIC
2L	7567966	2L_7567966_SNP [dm3] 2L_7567966_SNP [dm6]	A	T	2.316e^-4	0.88	INTRON RapGAP1
2R	15120327	2R_15120327_SNP [dm3] 2R_19232822_SNP [dm6]	A	C	2.316e^-4	0.88	INTRON cora	TF binding site mE1_TFBS_HSA
3R	22961797	3R_22961797_DEL [dm3] 3R_27136075_DEL [dm6]	CG	T	2.317e^-4	0.88	INTRON CG6051
X	4274659	X_4274659_SNP [dm3] X_4380626_SNP [dm6]	T	G	2.319e^-4	0.88	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13486385	X_13486385_SNP [dm3] X_13592352_SNP [dm6]	A	G	2.325e^-4	0.881	UTR_3_PRIME Tango13 DOWNSTREAM Tango13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11228015	2L_11228015_SNP [dm3] 2L_11228015_SNP [dm6]	T	C	2.339e^-4	0.881	INTRON ab	TF binding site mE1_TFBS_sens
2L	17137849	2L_17137849_SNP [dm3] 2L_17137849_SNP [dm6]	A	T	2.348e^-4	0.881	INTRON beat-IIIa & 1 other
X	20510254	X_20510254_SNP [dm3] X_20639227_SNP [dm6]	A	G	2.356e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7287385	X_7287385_SNP [dm3] X_7393352_SNP [dm6]	A	T	2.361e^-4	0.881	INTRON CG1677 & 1 other
2R	4128381	2R_4128381_SNP [dm3] 2R_8240876_SNP [dm6]	G	T	2.364e^-4	0.881	DOWNSTREAM pnut & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	14332970	X_14332970_DEL [dm3] X_14438937_DEL [dm6]	CC	C	2.365e^-4	0.881	INTRON dpr8
2L	17291755	2L_17291755_SNP [dm3] 2L_17291755_SNP [dm6]	C	T	2.375e^-4	0.881	SYNONYMOUS_CODING CG6380
3L	395448	3L_395448_SNP [dm3] 3L_395448_SNP [dm6]	G	A	2.376e^-4	0.881	INTERGENIC	regulatory region REDfly_CRMs
X	21091723	X_21091723_SNP [dm3] X_21220696_SNP [dm6]	T	C	2.377e^-4	0.881	INTRON CG32521	TF binding site mE1_TFBS_chinmo
3L	14582943	3L_14582943_SNP [dm3] 3L_14589843_SNP [dm6]	G	A	2.382e^-4	0.881	INTRON HGTX
2R	9494622	2R_9494622_DEL [dm3] 2R_13607117_DEL [dm6]	AG	A	2.392e^-4	0.881	INTERGENIC
2R	15120351	2R_15120351_SNP [dm3] 2R_19232846_SNP [dm6]	A	G	2.396e^-4	0.881	INTRON cora	TF binding site mE1_TFBS_HSA
3L	5646076	3L_5646076_SNP [dm3] 3L_5652976_SNP [dm6]	G	A	2.397e^-4	0.881	DOWNSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	11342821	3R_11342821_DEL [dm3] 3R_15517099_DEL [dm6]	CT	C	2.410e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4668250	3L_4668250_DEL [dm3] 3L_4668250_DEL [dm6]	CTGGCCTGGGTTC...	C	2.415e^-4	0.881	UPSTREAM CG32236 INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15839982	3L_15839982_SNP [dm3] 3L_15846882_SNP [dm6]	A	T	2.416e^-4	0.881	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17393655	3R_17393655_SNP [dm3] 3R_21567933_SNP [dm6]	T	C	2.418e^-4	0.881	INTRON CG15498
3R	10781963	3R_10781963_SNP [dm3] 3R_14956241_SNP [dm6]	C	T	2.419e^-4	0.881	INTERGENIC
X	20750368	X_20750368_SNP [dm3] X_20879341_SNP [dm6]	T	A	2.422e^-4	0.881	INTRON shakB
3L	16386203	3L_16386203_SNP [dm3] 3L_16393103_SNP [dm6]	A	T	2.430e^-4	0.881	INTRON CG44836	TF binding site mE1_TFBS_HSA
3L	1879952	3L_1879952_SNP [dm3] 3L_1879952_SNP [dm6]	C	T	2.434e^-4	0.881	INTRON CG13937
2R	12232556	2R_12232556_SNP [dm3] 2R_16345051_SNP [dm6]	G	T	2.437e^-4	0.881	SYNONYMOUS_CODING Nup62 UPSTREAM CG7997 DOWNSTREAM wcd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	17393236	3R_17393236_SNP [dm3] 3R_21567514_SNP [dm6]	G	A	2.457e^-4	0.881	DOWNSTREAM CG15498 INTERGENIC
3L	5947085	3L_5947085_DEL [dm3] 3L_5953985_DEL [dm6]	AT	A	2.460e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6965664	3L_6965664_SNP [dm3] 3L_6972564_SNP [dm6]	T	A	2.460e^-4	0.881	UPSTREAM CG10063 DOWNSTREAM CG9953 & 1 other INTERGENIC
3R	12723959	3R_12723959_SNP [dm3] 3R_16898237_SNP [dm6]	A	G	2.481e^-4	0.881	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
2R	6563687	2R_6563687_SNP [dm3] 2R_10676182_SNP [dm6]	C	T	2.488e^-4	0.881	INTRON stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21936329	2L_21936329_SNP [dm3] 2L_21936329_SNP [dm6]	A	C	2.493e^-4	0.881	INTERGENIC	transposable element FlyBase
3R	16006006	3R_16006006_SNP [dm3] 3R_20180284_SNP [dm6]	A	G	2.495e^-4	0.881	INTERGENIC
X	14332926	X_14332926_SNP [dm3] X_14438893_SNP [dm6]	A	T	2.502e^-4	0.881	INTRON dpr8
2R	6768360	2R_6768360_SNP [dm3] 2R_10880855_SNP [dm6]	C	A	2.504e^-4	0.881	INTRON Pex6	TF binding site mE1_TFBS_sens mE1_TFBS_ttk
X	3426542	X_3426542_SNP [dm3] X_3532509_SNP [dm6]	T	A	2.506e^-4	0.881	INTRON CG32791
3L	4346393	3L_4346393_SNP [dm3] 3L_4346393_SNP [dm6]	C	A	2.507e^-4	0.881	UPSTREAM Cip4 INTRON Cip4 & 1 other
2L	5329814	2L_5329814_SNP [dm3] 2L_5329814_SNP [dm6]	G	A	2.515e^-4	0.881	UPSTREAM CG14022 & 1 other DOWNSTREAM fusl INTERGENIC
2R	15014132	2R_15014132_SNP [dm3] 2R_19126627_SNP [dm6]	A	G	2.521e^-4	0.881	UPSTREAM CG15117 INTRON CG15117
3R	24083711	3R_24083711_INS [dm3] 3R_28257989_INS [dm6]	T	TT	2.522e^-4	0.881	INTERGENIC
3R	22913876	3R_22913876_SNP [dm3] 3R_27088154_SNP [dm6]	C	A	2.526e^-4	0.881	UPSTREAM Cpr97Ea INTERGENIC
3L	6210829	3L_6210829_SNP [dm3] 3L_6217729_SNP [dm6]	G	A	2.527e^-4	0.881	SYNONYMOUS_CODING LanA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7567731	2L_7567731_SNP [dm3] 2L_7567731_SNP [dm6]	C	T	2.529e^-4	0.881	INTRON RapGAP1
2L	19829100	2L_19829100_SNP [dm3] 2L_19829100_SNP [dm6]	T	C	2.536e^-4	0.881	INTRON sick
3R	9678142	3R_9678142_SNP [dm3] 3R_13852420_SNP [dm6]	A	T	2.541e^-4	0.881	INTERGENIC
3L	10166228	3L_10166228_SNP [dm3] 3L_10173128_SNP [dm6]	T	A	2.545e^-4	0.881	INTRON dpr10
X	5370330	X_5370330_DEL [dm3] X_5476297_DEL [dm6]	TGAAGCCGGGA...	T	2.546e^-4	0.881	INTRON SPR
2L	8247709	2L_8247709_SNP [dm3] 2L_8247709_SNP [dm6]	A	G	2.551e^-4	0.881	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8431078	2L_8431078_SNP [dm3] 2L_8431078_SNP [dm6]	A	C	2.567e^-4	0.881	UTR_3_PRIME Akap200 DOWNSTREAM grk & 1 other
3L	6545151	3L_6545151_SNP [dm3] 3L_6552051_SNP [dm6]	C	A	2.570e^-4	0.881	INTRON CG18769	TF binding site BDTNP1_TFBS_dl
3L	18326340	3L_18326340_SNP [dm3] 3L_18333240_SNP [dm6]	G	A	2.572e^-4	0.881	INTERGENIC
2L	8996686	2L_8996686_SNP [dm3] 2L_8996686_SNP [dm6]	T	A	2.579e^-4	0.881	SPLICE_SITE_REGION alien UPSTREAM CG18661 INTRON alien	TF binding site BDTNP1_TFBS_dl
2L	4280982	2L_4280982_SNP [dm3] 2L_4280982_SNP [dm6]	C	T	2.592e^-4	0.881	INTRON Art2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5006392	X_5006392_SNP [dm3] X_5112359_SNP [dm6]	C	A	2.593e^-4	0.881	INTRON rg & 1 other
3L	13829837	3L_13829837_INS [dm3] 3L_13836737_INS [dm6]	A	AAGCCTCTTTG...	2.599e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4282802	2L_4282802_SNP [dm3] 2L_4282802_SNP [dm6]	T	G	2.603e^-4	0.881	UPSTREAM tutl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	11496003	2L_11496003_INS [dm3] 2L_11496003_INS [dm6]	A	AACAAGT	2.607e^-4	0.881	DOWNSTREAM CG6488 INTERGENIC
3L	7843611	3L_7843611_SNP [dm3] 3L_7850511_SNP [dm6]	T	G	2.613e^-4	0.881	INTRON Pdp1	regulatory region REDfly_CRMs
2L	7522294	2L_7522294_SNP [dm3] 2L_7522294_SNP [dm6]	G	A	2.622e^-4	0.881	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	13956360	2R_13956360_SNP [dm3] 2R_18068855_SNP [dm6]	C	T	2.622e^-4	0.881	INTRON CG34386
3R	22977380	3R_22977380_SNP [dm3] 3R_27151658_SNP [dm6]	T	C	2.625e^-4	0.881	UPSTREAM Men-b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
X	4986538	X_4986538_SNP [dm3] X_5092505_SNP [dm6]	A	C	2.630e^-4	0.881	INTRON rg & 1 other
2L	5329460	2L_5329460_SNP [dm3] 2L_5329460_SNP [dm6]	T	A	2.632e^-4	0.881	UPSTREAM CG14022 & 1 other INTERGENIC
2L	1563077	2L_1563077_SNP [dm3] 2L_1563077_SNP [dm6]	A	C	2.640e^-4	0.881	INTRON haf	TF binding site mE1_TFBS_inv
2R	12905545	2R_12905545_SNP [dm3] 2R_17018040_SNP [dm6]	A	G	2.657e^-4	0.881	INTRON CG8963	TF binding site BDTNP1_TFBS_dl
2L	3016759	2L_3016759_SNP [dm3] 2L_3016759_SNP [dm6]	G	A	2.675e^-4	0.881	UTR_3_PRIME CG17224 DOWNSTREAM CG17265
2R	5519344	2R_5519344_SNP [dm3] 2R_9631839_SNP [dm6]	T	A	2.676e^-4	0.881	INTRON Mmp2
2R	12054043	2R_12054043_SNP [dm3] 2R_16166538_SNP [dm6]	T	C	2.678e^-4	0.881	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12090430	3L_12090430_SNP [dm3] 3L_12097330_SNP [dm6]	T	G	2.678e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8241992	2L_8241992_SNP [dm3] 2L_8241992_SNP [dm6]	A	G	2.681e^-4	0.881	UPSTREAM CR43262 & 2 others INTERGENIC
2R	15107765	2R_15107765_SNP [dm3] 2R_19220260_SNP [dm6]	C	T	2.686e^-4	0.881	INTRON hppy
3R	19194950	3R_19194950_SNP [dm3] 3R_23369228_SNP [dm6]	A	C	2.690e^-4	0.881	INTERGENIC
X	11753217	X_11753217_SNP [dm3] X_11859184_SNP [dm6]	A	T	2.700e^-4	0.881	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	26437354	3R_26437354_SNP [dm3] 3R_30611632_SNP [dm6]	G	C	2.703e^-4	0.881	UPSTREAM CR45571 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8603907	3R_8603907_SNP [dm3] 3R_12778185_SNP [dm6]	T	C	2.707e^-4	0.881	UTR_5_PRIME beat-Vc
2L	7464607	2L_7464607_SNP [dm3] 2L_7464607_SNP [dm6]	G	A	2.717e^-4	0.881	INTERGENIC
2L	1594999	2L_1594999_SNP [dm3] 2L_1594999_SNP [dm6]	T	A	2.721e^-4	0.881	UTR_3_PRIME CG31935 INTRON haf
2L	7567868	2L_7567868_SNP [dm3] 2L_7567868_SNP [dm6]	T	C	2.721e^-4	0.881	INTRON RapGAP1
X	22326811	X_22326811_SNP [dm3] X_22924975_SNP [dm6]	A	C	2.730e^-4	0.881	INTERGENIC	transposable element FlyBase
3R	26076930	3R_26076930_SNP [dm3] 3R_30251208_SNP [dm6]	G	T	2.730e^-4	0.881	DOWNSTREAM CG34299 INTRON CG9682
3L	12829631	3L_12829631_SNP [dm3] 3L_12836531_SNP [dm6]	T	A	2.735e^-4	0.881	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9491743	2R_9491743_SNP [dm3] 2R_13604238_SNP [dm6]	C	T	2.741e^-4	0.881	DOWNSTREAM CG34236 INTERGENIC
3L	3107674	3L_3107674_INS [dm3] 3L_3107674_INS [dm6]	A	ACAATA	2.745e^-4	0.881	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20274705	X_20274705_SNP [dm3] X_20403678_SNP [dm6]	G	A	2.751e^-4	0.881	SYNONYMOUS_CODING HERC2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5539663	X_5539663_SNP [dm3] X_5645630_SNP [dm6]	A	G	2.753e^-4	0.881	INTRON CG42492
2L	3783544	2L_3783544_SNP [dm3] 2L_3783544_SNP [dm6]	C	A	2.761e^-4	0.881	UTR_3_PRIME bowl
3R	8733697	3R_8733697_SNP [dm3] 3R_12907975_SNP [dm6]	C	T	2.767e^-4	0.881	INTERGENIC
3L	10166348	3L_10166348_SNP [dm3] 3L_10173248_SNP [dm6]	T	A	2.768e^-4	0.881	INTRON dpr10
3L	4817494	3L_4817494_SNP [dm3] 3L_4817494_SNP [dm6]	C	T	2.774e^-4	0.881	SYNONYMOUS_CODING Dhc64C
2L	8243822	2L_8243822_SNP [dm3] 2L_8243822_SNP [dm6]	A	G	2.775e^-4	0.881	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
3R	8735505	3R_8735505_SNP [dm3] 3R_12909783_SNP [dm6]	C	T	2.777e^-4	0.881	DOWNSTREAM CG10909 INTERGENIC
2R	19750318	2R_19750318_SNP [dm3] 2R_23862795_SNP [dm6]	A	T	2.781e^-4	0.881	UPSTREAM TBPH DOWNSTREAM CG4585 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	6051124	3R_6051124_SNP [dm3] 3R_10225402_SNP [dm6]	T	C	2.783e^-4	0.881	UTR_3_PRIME CG34107 UPSTREAM CG42795 & 1 other
2R	12437606	2R_12437606_SNP [dm3] 2R_16550101_SNP [dm6]	A	T	2.784e^-4	0.881	INTERGENIC
3L	15049238	3L_15049238_SNP [dm3] 3L_15056138_SNP [dm6]	G	A	2.796e^-4	0.881	DOWNSTREAM CG13463 INTRON Sytbeta
3L	2131631	3L_2131631_SNP [dm3] 3L_2131631_SNP [dm6]	C	T	2.797e^-4	0.881	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18298868	2R_18298868_SNP [dm3] 2R_22411363_SNP [dm6]	G	A	2.799e^-4	0.881	SYNONYMOUS_CODING qkr58E-3 UPSTREAM Mes4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	14181086	2R_14181086_INS [dm3] 2R_18293581_INS [dm6]	A	AG	2.801e^-4	0.881	UTR_5_PRIME CG14502 UPSTREAM CG14502 INTRON CG14502 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	15915706	2L_15915706_DEL [dm3] 2L_15915706_DEL [dm6]	GGCTGGACGGATGATAATGC...	G	2.808e^-4	0.881	INTRON beat-Ib
3R	25129600	3R_25129600_SNP [dm3] 3R_29303878_SNP [dm6]	G	A	2.811e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16737101	3L_16737101_SNP [dm3] 3L_16744001_SNP [dm6]	T	A	2.818e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	16435910	3L_16435910_SNP [dm3] 3L_16442810_SNP [dm6]	T	C	2.821e^-4	0.881	INTRON CG33158 & 1 other
3R	7403776	3R_7403776_SNP [dm3] 3R_11578054_SNP [dm6]	G	A	2.832e^-4	0.881	SYNONYMOUS_CODING CG6790 UPSTREAM CG5342	TF binding site mE1_TFBS_cad
3R	25348118	3R_25348118_SNP [dm3] 3R_29522396_SNP [dm6]	C	T	2.834e^-4	0.881	INTERGENIC
X	9767525	X_9767525_SNP [dm3] X_9873492_SNP [dm6]	G	A	2.840e^-4	0.881	UTR_3_PRIME CG32695 DOWNSTREAM CG32695
3R	21765169	3R_21765169_SNP [dm3] 3R_25939447_SNP [dm6]	A	T	2.840e^-4	0.881	INTRON CCAP-R
X	9449806	X_9449806_SNP [dm3] X_9555773_SNP [dm6]	T	C	2.841e^-4	0.881	UTR_3_PRIME CG15317 DOWNSTREAM RpS28b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2R	12089937	2R_12089937_SNP [dm3] 2R_16202432_SNP [dm6]	A	G	2.844e^-4	0.881	SYNONYMOUS_CODING shark DOWNSTREAM mrj	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7459104	2L_7459104_SNP [dm3] 2L_7459104_SNP [dm6]	G	T	2.845e^-4	0.881	UPSTREAM Gr28b INTRON Gr28b
2L	18219752	2L_18219752_SNP [dm3] 2L_18219752_SNP [dm6]	A	T	2.856e^-4	0.881	INTRON CG42750
2L	16833073	2L_16833073_SNP [dm3] 2L_16833073_SNP [dm6]	G	A	2.872e^-4	0.881	SYNONYMOUS_CODING CG13282 DOWNSTREAM CG31739
3R	16577288	3R_16577288_SNP [dm3] 3R_20751566_SNP [dm6]	C	T	2.874e^-4	0.881	INTRON CG42322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10600465	3R_10600465_DEL [dm3] 3R_14774743_DEL [dm6]	GTGCAAAAAGTGAG...	G	2.874e^-4	0.881	INTRON jvl
2L	5515384	2L_5515384_SNP [dm3] 2L_5515384_SNP [dm6]	T	A	2.878e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14125998	3R_14125998_SNP [dm3] 3R_18300276_SNP [dm6]	A	C	2.879e^-4	0.881	UTR_3_PRIME CG18600 DOWNSTREAM Dlc90F
3L	5879742	3L_5879742_SNP [dm3] 3L_5886642_SNP [dm6]	A	C	2.896e^-4	0.881	INTERGENIC
2R	11826023	2R_11826023_SNP [dm3] 2R_15938518_SNP [dm6]	G	T	2.901e^-4	0.881	SYNONYMOUS_CODING Mlf	TF binding site mE1_TFBS_chinmo
2R	9385610	2R_9385610_SNP [dm3] 2R_13498105_SNP [dm6]	T	A	2.921e^-4	0.881	INTRON drk
3R	23399288	3R_23399288_SNP [dm3] 3R_27573566_SNP [dm6]	T	C	2.924e^-4	0.881	INTRON wdb
3R	2983542	3R_2983542_SNP [dm3] 3R_7157820_SNP [dm6]	T	G	2.926e^-4	0.881	INTERGENIC
3L	10410717	3L_10410717_INS [dm3] 3L_10417617_INS [dm6]	T	TGT	2.931e^-4	0.881	INTERGENIC
2L	15934282	2L_15934282_SNP [dm3] 2L_15934282_SNP [dm6]	T	A	2.936e^-4	0.881	INTRON beat-Ib
X	21055833	X_21055833_SNP [dm3] X_21184806_SNP [dm6]	A	G	2.952e^-4	0.881	INTERGENIC
3R	21765220	3R_21765220_SNP [dm3] 3R_25939498_SNP [dm6]	T	G	2.954e^-4	0.881	INTRON CCAP-R
2L	20676319	2L_20676319_SNP [dm3] 2L_20676319_SNP [dm6]	C	T	2.960e^-4	0.881	SYNONYMOUS_CODING ik2 UPSTREAM CG31678	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1768955	3R_1768955_SNP [dm3] 3R_5943233_SNP [dm6]	A	C	2.960e^-4	0.881	INTRON CG34113
3L	5871188	3L_5871188_SNP [dm3] 3L_5878088_SNP [dm6]	C	T	2.962e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4986540	X_4986540_SNP [dm3] X_5092507_SNP [dm6]	T	A	2.963e^-4	0.881	INTRON rg & 1 other
X	14333011	X_14333011_SNP [dm3] X_14438978_SNP [dm6]	C	T	2.979e^-4	0.881	INTRON dpr8
2L	17721148	2L_17721148_SNP [dm3] 2L_17721148_SNP [dm6]	C	A	2.984e^-4	0.881	INTRON CadN
2L	11470477	2L_11470477_DEL [dm3] 2L_11470477_DEL [dm6]	TGTTTAT	T	2.986e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	7021526	3L_7021526_SNP [dm3] 3L_7028426_SNP [dm6]	T	C	2.993e^-4	0.881	INTRON Mp
2R	16397797	2R_16397797_SNP [dm3] 2R_20510292_SNP [dm6]	C	A	2.994e^-4	0.881	UPSTREAM CR44648 DOWNSTREAM CR44647 INTERGENIC
3R	2880799	3R_2880799_SNP [dm3] 3R_7055077_SNP [dm6]	T	A	2.994e^-4	0.881	NON_SYNONYMOUS_CODING CG1979 DOWNSTREAM Sodh-1
3L	6471164	3L_6471164_SNP [dm3] 3L_6478064_SNP [dm6]	T	C	3.009e^-4	0.881	INTRON CG42747
3L	16371951	3L_16371951_SNP [dm3] 3L_16378851_SNP [dm6]	A	G	3.014e^-4	0.881	UPSTREAM roq DOWNSTREAM CG4753 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21388451	3R_21388451_SNP [dm3] 3R_25562729_SNP [dm6]	T	G	3.018e^-4	0.881	INTRON msi
2L	1563102	2L_1563102_SNP [dm3] 2L_1563102_SNP [dm6]	T	C	3.031e^-4	0.881	INTRON haf	TF binding site mE1_TFBS_inv
3R	17841205	3R_17841205_SNP [dm3] 3R_22015483_SNP [dm6]	A	G	3.041e^-4	0.881	SPLICE_SITE_REGION CG6332 DOWNSTREAM Eip93F & 1 other INTRON CG6332	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	25348104	3R_25348104_SNP [dm3] 3R_29522382_SNP [dm6]	G	A	3.043e^-4	0.881	INTERGENIC
X	13883742	X_13883742_SNP [dm3] X_13989709_SNP [dm6]	G	T	3.044e^-4	0.881	UPSTREAM mamo INTRON mamo	TF binding site BDTNP1_TFBS_dl
2R	17947362	2R_17947362_SNP [dm3] 2R_22059857_SNP [dm6]	G	A	3.045e^-4	0.881	SPLICE_SITE_REGION CG13501 SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo
3L	3534897	3L_3534897_SNP [dm3] 3L_3534897_SNP [dm6]	T	A	3.046e^-4	0.881	INTRON Eip63E
3L	10428144	3L_10428144_SNP [dm3] 3L_10435044_SNP [dm6]	G	A	3.047e^-4	0.881	UPSTREAM Ir67c INTERGENIC
3L	14583073	3L_14583073_SNP [dm3] 3L_14589973_SNP [dm6]	T	G	3.052e^-4	0.881	INTRON HGTX
X	14939657	X_14939657_INS [dm3] X_15045624_INS [dm6]	T	TAT	3.060e^-4	0.881	INTRON hiw & 1 other
2L	21874535	2L_21874535_INS [dm3] 2L_21874535_INS [dm6]	T	TT	3.062e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22992295	3R_22992295_SNP [dm3] 3R_27166573_SNP [dm6]	A	C	3.070e^-4	0.881	UPSTREAM CG34293 INTRON spn-D	regulatory region REDfly_CRMs
2L	8329550	2L_8329550_SNP [dm3] 2L_8329550_SNP [dm6]	C	A	3.078e^-4	0.881	INTRON CG14275
3R	19192069	3R_19192069_SNP [dm3] 3R_23366347_SNP [dm6]	G	A	3.088e^-4	0.881	INTERGENIC
3R	6432764	3R_6432764_SNP [dm3] 3R_10607042_SNP [dm6]	C	G	3.099e^-4	0.881	INTRON hth
3L	7391364	3L_7391364_SNP [dm3] 3L_7398264_SNP [dm6]	G	A	3.100e^-4	0.881	UPSTREAM CG8562 DOWNSTREAM CG32379 INTERGENIC	TF binding site mE1_TFBS_cad
2R	11415862	2R_11415862_SNP [dm3] 2R_15528357_SNP [dm6]	C	T	3.102e^-4	0.881	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20446453	3R_20446453_SNP [dm3] 3R_24620731_SNP [dm6]	C	G	3.104e^-4	0.881	SYNONYMOUS_CODING mld	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12398928	2R_12398928_SNP [dm3] 2R_16511423_SNP [dm6]	C	T	3.114e^-4	0.881	INTRON Sema-2a
2R	6339524	2R_6339524_SNP [dm3] 2R_10452019_SNP [dm6]	A	G	3.123e^-4	0.881	INTRON Galphao & 1 other
3L	14328003	3L_14328003_SNP [dm3] 3L_14334903_SNP [dm6]	T	A	3.126e^-4	0.881	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9094113	3L_9094113_SNP [dm3] 3L_9101013_SNP [dm6]	T	C	3.128e^-4	0.881	UTR_3_PRIME bol DOWNSTREAM bol
3L	2147321	3L_2147321_SNP [dm3] 3L_2147321_SNP [dm6]	A	G	3.130e^-4	0.881	INTRON zormin
3R	18559918	3R_18559918_SNP [dm3] 3R_22734196_SNP [dm6]	T	C	3.130e^-4	0.881	SYNONYMOUS_CODING Dcr-1 UPSTREAM Takl2	TF binding site mE1_TFBS_cad
X	14948815	X_14948815_SNP [dm3] X_15054782_SNP [dm6]	G	A	3.130e^-4	0.881	SYNONYMOUS_CODING hiw
3R	18784324	3R_18784324_SNP [dm3] 3R_22958602_SNP [dm6]	A	G	3.142e^-4	0.881	INTRON klg	TF binding site mE1_TFBS_cad
2L	1856986	2L_1856986_SNP [dm3] 2L_1856986_SNP [dm6]	A	T	3.145e^-4	0.881	UTR_3_PRIME wry
3L	16731335	3L_16731335_SNP [dm3] 3L_16738235_SNP [dm6]	C	T	3.153e^-4	0.881	INTRON CG9701
3L	7389955	3L_7389955_SNP [dm3] 3L_7396855_SNP [dm6]	C	A	3.182e^-4	0.881	SYNONYMOUS_CODING CG32379 DOWNSTREAM CG8563
3L	2147383	3L_2147383_SNP [dm3] 3L_2147383_SNP [dm6]	T	A	3.193e^-4	0.881	INTRON zormin
3R	25428641	3R_25428641_SNP [dm3] 3R_29602919_SNP [dm6]	T	A	3.194e^-4	0.881	INTRON alph
3L	16674209	3L_16674209_SNP [dm3] 3L_16681109_SNP [dm6]	C	T	3.196e^-4	0.881	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15443228	3R_15443228_SNP [dm3] 3R_19617506_SNP [dm6]	G	A	3.206e^-4	0.881	SYNONYMOUS_CODING CG6231	TF binding site BDTNP1_TFBS_twi
2L	16375242	2L_16375242_SNP [dm3] 2L_16375242_SNP [dm6]	G	C	3.212e^-4	0.881	INTERGENIC
3L	4429472	3L_4429472_SNP [dm3] 3L_4429472_SNP [dm6]	C	A	3.212e^-4	0.881	UTR_5_PRIME nAChRbeta1	regulatory region REDfly_CRMs
3R	15375207	3R_15375207_SNP [dm3] 3R_19549485_SNP [dm6]	G	A	3.213e^-4	0.881	INTRON Dys
3L	4818160	3L_4818160_SNP [dm3] 3L_4818160_SNP [dm6]	T	A	3.214e^-4	0.881	SYNONYMOUS_CODING Dhc64C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12149907	2R_12149907_SNP [dm3] 2R_16262402_SNP [dm6]	C	T	3.215e^-4	0.881	SYNONYMOUS_CODING fidipidine
2L	21769136	2L_21769136_SNP [dm3] 2L_21769136_SNP [dm6]	T	C	3.217e^-4	0.881	INTRON CG31612
X	11753210	X_11753210_INS [dm3] X_11859177_INS [dm6]	A	GTTTATATAAAAAGATAAAC...	3.220e^-4	0.881	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	11753214	X_11753214_SNP [dm3] X_11859181_SNP [dm6]	C	G	3.220e^-4	0.881	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	11753226	X_11753226_INS [dm3] X_11859193_INS [dm6]	T	TTTCCATCATCTCATT...	3.220e^-4	0.881	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	25348100	3R_25348100_SNP [dm3] 3R_29522378_SNP [dm6]	A	G	3.221e^-4	0.881	INTERGENIC
2L	7567720	2L_7567720_SNP [dm3] 2L_7567720_SNP [dm6]	C	G	3.223e^-4	0.881	INTRON RapGAP1
X	14948227	X_14948227_SNP [dm3] X_15054194_SNP [dm6]	G	A	3.225e^-4	0.881	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5085109	2L_5085109_SNP [dm3] 2L_5085109_SNP [dm6]	T	C	3.236e^-4	0.881	INTRON pgant5	TF binding site mE1_TFBS_cad
2R	12293226	2R_12293226_SNP [dm3] 2R_16405721_SNP [dm6]	C	G	3.243e^-4	0.881	INTRON Sema-2b
2L	20835462	2L_20835462_SNP [dm3] 2L_20835462_SNP [dm6]	T	G	3.247e^-4	0.881	INTRON Oseg5	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	4994312	3L_4994312_SNP [dm3] 3L_4994312_SNP [dm6]	A	G	3.248e^-4	0.881	NON_SYNONYMOUS_CODING CG32232 INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16936396	2L_16936396_SNP [dm3] 2L_16936396_SNP [dm6]	G	A	3.249e^-4	0.881	INTERGENIC
3R	5276391	3R_5276391_INS [dm3] 3R_9450669_INS [dm6]	G	GT	3.250e^-4	0.881	UTR_3_PRIME ps
3L	10424973	3L_10424973_SNP [dm3] 3L_10431873_SNP [dm6]	T	C	3.260e^-4	0.881	SYNONYMOUS_CODING Ir67b DOWNSTREAM Ir67c
X	5076219	X_5076219_SNP [dm3] X_5182186_SNP [dm6]	C	T	3.260e^-4	0.881	UTR_5_PRIME CG5062 INTRON rg & 1 other
X	7315729	X_7315729_SNP [dm3] X_7421696_SNP [dm6]	C	T	3.275e^-4	0.881	UTR_3_PRIME CG9657 DOWNSTREAM CG9657
2R	2579713	2R_2579713_SNP [dm3] 2R_6692208_SNP [dm6]	C	G	3.277e^-4	0.881	NON_SYNONYMOUS_CODING CG9422	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13351287	2L_13351287_SNP [dm3] 2L_13351287_SNP [dm6]	A	G	3.287e^-4	0.881	SYNONYMOUS_CODING CG9395
3L	12671672	3L_12671672_SNP [dm3] 3L_12678572_SNP [dm6]	G	A	3.289e^-4	0.881	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_sens
2R	12354711	2R_12354711_SNP [dm3] 2R_16467206_SNP [dm6]	G	A	3.298e^-4	0.881	SPLICE_SITE_REGION CheB53a INTRON CheB53a
3L	17543196	3L_17543196_SNP [dm3] 3L_17550096_SNP [dm6]	T	A	3.303e^-4	0.881	NON_SYNONYMOUS_CODING CG7542 UPSTREAM Jon74E DOWNSTREAM CycT	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11333360	3R_11333360_SNP [dm3] 3R_15507638_SNP [dm6]	C	T	3.304e^-4	0.881	DOWNSTREAM CG44014 INTERGENIC
2L	7465341	2L_7465341_SNP [dm3] 2L_7465341_SNP [dm6]	A	T	3.306e^-4	0.881	INTERGENIC
2L	1558085	2L_1558085_SNP [dm3] 2L_1558085_SNP [dm6]	A	T	3.307e^-4	0.881	INTRON haf
2L	7523051	2L_7523051_SNP [dm3] 2L_7523051_SNP [dm6]	A	T	3.308e^-4	0.881	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13956359	2R_13956359_SNP [dm3] 2R_18068854_SNP [dm6]	C	G	3.309e^-4	0.881	INTRON CG34386
3L	6471299	3L_6471299_SNP [dm3] 3L_6478199_SNP [dm6]	T	C	3.309e^-4	0.881	INTRON CG42747
3L	5394892	3L_5394892_SNP [dm3] 3L_5401792_SNP [dm6]	G	T	3.314e^-4	0.881	INTERGENIC
2R	15117899	2R_15117899_SNP [dm3] 2R_19230394_SNP [dm6]	G	T	3.315e^-4	0.881	INTRON cora	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	3886361	2L_3886361_SNP [dm3] 2L_3886361_SNP [dm6]	C	T	3.325e^-4	0.881	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	13227928	3L_13227928_SNP [dm3] 3L_13234828_SNP [dm6]	T	C	3.328e^-4	0.881	INTRON caps
2R	12073760	2R_12073760_SNP [dm3] 2R_16186255_SNP [dm6]	G	T	3.329e^-4	0.881	UPSTREAM clu & 1 other INTRON CG8441	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13905442	2R_13905442_SNP [dm3] 2R_18017937_SNP [dm6]	A	G	3.333e^-4	0.881	UPSTREAM CG5084 INTERGENIC
3R	20146972	3R_20146972_SNP [dm3] 3R_24321250_SNP [dm6]	G	A	3.336e^-4	0.881	SYNONYMOUS_CODING BRWD3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	20147119	3R_20147119_SNP [dm3] 3R_24321397_SNP [dm6]	G	A	3.336e^-4	0.881	SYNONYMOUS_CODING BRWD3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8039520	2L_8039520_SNP [dm3] 2L_8039520_SNP [dm6]	G	A	3.337e^-4	0.881	UTR_3_PRIME Cka INTRON CG7367	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12090608	2R_12090608_DEL [dm3] 2R_16203103_DEL [dm6]	ATTATTGCTGATTTA...	A	3.339e^-4	0.881	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	16373017	2L_16373017_SNP [dm3] 2L_16373017_SNP [dm6]	A	G	3.354e^-4	0.881	INTERGENIC
2R	18285092	2R_18285092_SNP [dm3] 2R_22397587_SNP [dm6]	A	C	3.356e^-4	0.881	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8653958	2L_8653958_SNP [dm3] 2L_8653958_SNP [dm6]	A	C	3.379e^-4	0.881	INTRON Sema-1a
X	9404046	X_9404046_SNP [dm3] X_9510013_SNP [dm6]	C	A	3.395e^-4	0.881	INTRON CG32700
3R	14203292	3R_14203292_SNP [dm3] 3R_18377570_SNP [dm6]	A	G	3.395e^-4	0.881	DOWNSTREAM CG7675 INTERGENIC
2R	11728819	2R_11728819_SNP [dm3] 2R_15841314_SNP [dm6]	G	A	3.396e^-4	0.881	INTRON tun	regulatory region REDfly_CRMs
2L	8241975	2L_8241975_SNP [dm3] 2L_8241975_SNP [dm6]	T	A	3.400e^-4	0.881	UPSTREAM CR43262 & 2 others INTERGENIC
2R	10530737	2R_10530737_SNP [dm3] 2R_14643232_SNP [dm6]	C	T	3.403e^-4	0.881	INTERGENIC
2R	10623592	2R_10623592_SNP [dm3] 2R_14736087_SNP [dm6]	A	C	3.403e^-4	0.881	INTERGENIC
3R	7405442	3R_7405442_SNP [dm3] 3R_11579720_SNP [dm6]	A	C	3.403e^-4	0.881	SYNONYMOUS_CODING CG5342 UPSTREAM CG6790
3L	12671677	3L_12671677_SNP [dm3] 3L_12678577_SNP [dm6]	A	G	3.410e^-4	0.881	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_sens
X	5370346	X_5370346_DEL [dm3] X_5476313_DEL [dm6]	CC	C	3.414e^-4	0.881	INTRON SPR
2R	12232602	2R_12232602_SNP [dm3] 2R_16345097_SNP [dm6]	T	C	3.429e^-4	0.881	NON_SYNONYMOUS_CODING Nup62 UPSTREAM CG7997 DOWNSTREAM wcd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	7615207	2L_7615207_SNP [dm3] 2L_7615207_SNP [dm6]	C	G	3.429e^-4	0.881	SYNONYMOUS_CODING CG6739
3R	6432766	3R_6432766_SNP [dm3] 3R_10607044_SNP [dm6]	G	C	3.441e^-4	0.881	INTRON hth
3R	10600684	3R_10600684_SNP [dm3] 3R_14774962_SNP [dm6]	T	A	3.442e^-4	0.881	INTRON jvl
2R	12905533	2R_12905533_SNP [dm3] 2R_17018028_SNP [dm6]	A	T	3.446e^-4	0.881	INTRON CG8963	TF binding site BDTNP1_TFBS_dl
2R	15120398	2R_15120398_SNP [dm3] 2R_19232893_SNP [dm6]	A	T	3.448e^-4	0.881	INTRON cora	TF binding site mE1_TFBS_HSA
3L	13755185	3L_13755185_SNP [dm3] 3L_13762085_SNP [dm6]	A	G	3.450e^-4	0.881	INTRON bru-3
2R	13999220	2R_13999220_SNP [dm3] 2R_18111715_SNP [dm6]	C	T	3.451e^-4	0.881	INTERGENIC
3R	1531569	3R_1531569_SNP [dm3] 3R_5705847_SNP [dm6]	C	T	3.453e^-4	0.881	UPSTREAM plx INTRON plx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1557108	2L_1557108_SNP [dm3] 2L_1557108_SNP [dm6]	T	A	3.456e^-4	0.881	INTRON haf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11529497	3L_11529497_INS [dm3] 3L_11536397_INS [dm6]	A	ATCA	3.457e^-4	0.881	INTRON Mob2	TF binding site mE1_TFBS_HSA
2L	15767149	2L_15767149_SNP [dm3] 2L_15767149_SNP [dm6]	A	G	3.463e^-4	0.881	SYNONYMOUS_CODING wek DOWNSTREAM CG3793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni mE1_TFBS_HSA mE1_TFBS_sens
X	14946640	X_14946640_SNP [dm3] X_15052607_SNP [dm6]	A	G	3.471e^-4	0.881	SYNONYMOUS_CODING hiw DOWNSTREAM CG5541	TF binding site mE1_TFBS_chinmo
3L	2167888	3L_2167888_SNP [dm3] 3L_2167888_SNP [dm6]	G	A	3.476e^-4	0.881	SYNONYMOUS_CODING CG15879
X	12642602	X_12642602_SNP [dm3] X_12748569_SNP [dm6]	G	A	3.479e^-4	0.881	UTR_3_PRIME CG4004 DOWNSTREAM CG4004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13856436	3L_13856436_SNP [dm3] 3L_13863336_SNP [dm6]	A	C	3.479e^-4	0.881	INTRON CG8745	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14583074	3L_14583074_SNP [dm3] 3L_14589974_SNP [dm6]	A	T	3.480e^-4	0.881	INTRON HGTX
3L	6471161	3L_6471161_SNP [dm3] 3L_6478061_SNP [dm6]	C	A	3.482e^-4	0.881	INTRON CG42747
3R	21768678	3R_21768678_SNP [dm3] 3R_25942956_SNP [dm6]	C	T	3.483e^-4	0.881	INTRON CCAP-R
3L	10302709	3L_10302709_SNP [dm3] 3L_10309609_SNP [dm6]	G	C	3.485e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6051132	3R_6051132_SNP [dm3] 3R_10225410_SNP [dm6]	T	C	3.486e^-4	0.881	UTR_3_PRIME CG34107 UPSTREAM CG42795 & 1 other
2L	7653619	2L_7653619_DEL [dm3] 2L_7653619_DEL [dm6]	AA	A	3.489e^-4	0.881	INTRON Slob
2L	4925774	2L_4925774_SNP [dm3] 2L_4925774_SNP [dm6]	G	A	3.506e^-4	0.881	INTRON hoe1
2R	13703453	2R_13703453_SNP [dm3] 2R_17815948_SNP [dm6]	G	T	3.510e^-4	0.881	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8248110	2L_8248110_SNP [dm3] 2L_8248110_SNP [dm6]	A	T	3.512e^-4	0.881	NON_SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	2749687	3L_2749687_SNP [dm3] 3L_2749687_SNP [dm6]	C	G	3.515e^-4	0.881	INTRON Mrtf
2L	1547297	2L_1547297_SNP [dm3] 2L_1547297_SNP [dm6]	T	C	3.532e^-4	0.881	INTERGENIC
3L	6471301	3L_6471301_SNP [dm3] 3L_6478201_SNP [dm6]	A	G	3.537e^-4	0.881	INTRON CG42747
2R	19191755	2R_19191755_SNP [dm3] 2R_23304232_SNP [dm6]	G	T	3.540e^-4	0.881	INTERGENIC
2L	5085138	2L_5085138_SNP [dm3] 2L_5085138_SNP [dm6]	A	G	3.551e^-4	0.881	INTRON pgant5	TF binding site mE1_TFBS_cad
3R	25348122	3R_25348122_SNP [dm3] 3R_29522400_SNP [dm6]	T	C	3.552e^-4	0.881	INTERGENIC
X	8402954	X_8402954_SNP [dm3] X_8508921_SNP [dm6]	A	C	3.561e^-4	0.881	UPSTREAM CG33181 INTRON CG33181
X	4274654	X_4274654_SNP [dm3] X_4380621_SNP [dm6]	T	C	3.562e^-4	0.881	UPSTREAM CG12688 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15669095	3R_15669095_SNP [dm3] 3R_19843373_SNP [dm6]	G	A	3.563e^-4	0.881	INTERGENIC
3R	14314514	3R_14314514_SNP [dm3] 3R_18488792_SNP [dm6]	G	T	3.569e^-4	0.881	INTRON fru
3R	24068314	3R_24068314_SNP [dm3] 3R_28242592_SNP [dm6]	G	A	3.575e^-4	0.881	INTERGENIC
3R	18895579	3R_18895579_SNP [dm3] 3R_23069857_SNP [dm6]	C	G	3.581e^-4	0.881	DOWNSTREAM CG13830 INTERGENIC
3R	11342082	3R_11342082_SNP [dm3] 3R_15516360_SNP [dm6]	C	T	3.587e^-4	0.881	INTERGENIC
X	8390324	X_8390324_SNP [dm3] X_8496291_SNP [dm6]	C	T	3.590e^-4	0.881	INTRON CG33181
2R	12905817	2R_12905817_SNP [dm3] 2R_17018312_SNP [dm6]	A	G	3.592e^-4	0.881	SYNONYMOUS_CODING CG8963 INTRON CG8963	TF binding site BDTNP1_TFBS_dl
3L	14627512	3L_14627512_INS [dm3] 3L_14634412_INS [dm6]	T	TT	3.597e^-4	0.881	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14940281	X_14940281_SNP [dm3] X_15046248_SNP [dm6]	C	T	3.611e^-4	0.881	INTRON hiw & 1 other
3R	25434106	3R_25434106_SNP [dm3] 3R_29608384_SNP [dm6]	T	C	3.613e^-4	0.881	UPSTREAM Diedel2 INTRON alph
2L	7042173	2L_7042173_SNP [dm3] 2L_7042173_SNP [dm6]	C	G	3.617e^-4	0.881	UPSTREAM milt INTRON milt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20134818	2R_20134818_SNP [dm3] 2R_24247295_SNP [dm6]	C	T	3.625e^-4	0.881	INTRON nord
3R	22051638	3R_22051638_SNP [dm3] 3R_26225916_SNP [dm6]	G	C	3.626e^-4	0.881	INTERGENIC
3L	981787	3L_981787_SNP [dm3] 3L_981787_SNP [dm6]	T	C	3.633e^-4	0.881	INTRON Glut1	TF binding site mE1_TFBS_chinmo
3L	16227933	3L_16227933_SNP [dm3] 3L_16234833_SNP [dm6]	A	C	3.634e^-4	0.881	SYNONYMOUS_CODING l_3_72Dp DOWNSTREAM Hsc20	TF binding site mE1_TFBS_inv
3L	14583078	3L_14583078_SNP [dm3] 3L_14589978_SNP [dm6]	T	G	3.647e^-4	0.881	INTRON HGTX
3L	5284038	3L_5284038_INS [dm3] 3L_5290938_INS [dm6]	A	AGCCAGAAAAGAAGATTTTC...	3.650e^-4	0.881	INTERGENIC
3L	17488270	3L_17488270_SNP [dm3] 3L_17495170_SNP [dm6]	C	G	3.661e^-4	0.881	SYNONYMOUS_CODING edin INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	12848553	3L_12848553_SNP [dm3] 3L_12855453_SNP [dm6]	C	A	3.667e^-4	0.881	INTRON Ent3	TF binding site mE1_TFBS_cad
3R	11341821	3R_11341821_SNP [dm3] 3R_15516099_SNP [dm6]	C	T	3.668e^-4	0.881	INTERGENIC
3R	24419450	3R_24419450_SNP [dm3] 3R_28593728_SNP [dm6]	C	T	3.673e^-4	0.881	EXON CR43440	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14940240	X_14940240_SNP [dm3] X_15046207_SNP [dm6]	A	G	3.677e^-4	0.881	INTRON hiw & 1 other
X	14940242	X_14940242_SNP [dm3] X_15046209_SNP [dm6]	A	G	3.677e^-4	0.881	INTRON hiw & 1 other
3L	2163410	3L_2163410_SNP [dm3] 3L_2163410_SNP [dm6]	G	A	3.680e^-4	0.881	INTRON CG15822
2L	19095235	2L_19095235_SNP [dm3] 2L_19095235_SNP [dm6]	A	C	3.684e^-4	0.881	INTRON Lim3	TF binding site mE1_TFBS_cad
X	14926915	X_14926915_SNP [dm3] X_15032882_SNP [dm6]	T	A	3.686e^-4	0.881	UTR_3_PRIME be INTRON hiw & 1 other
3R	14998942	3R_14998942_SNP [dm3] 3R_19173220_SNP [dm6]	T	A	3.686e^-4	0.881	INTERGENIC
3L	17050873	3L_17050873_SNP [dm3] 3L_17057773_SNP [dm6]	A	T	3.689e^-4	0.881	INTRON CG7724	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2164170	3L_2164170_SNP [dm3] 3L_2164170_SNP [dm6]	A	G	3.696e^-4	0.881	UPSTREAM CG15822 INTERGENIC
X	9191453	X_9191453_DEL [dm3] X_9297420_DEL [dm6]	AT	A	3.698e^-4	0.881	INTRON lz
2R	6259477	2R_6259477_SNP [dm3] 2R_10371972_SNP [dm6]	A	G	3.709e^-4	0.881	INTRON CG42732	TF binding site mE1_TFBS_inv
2L	8412283	2L_8412283_SNP [dm3] 2L_8412283_SNP [dm6]	T	C	3.709e^-4	0.881	UTR_3_PRIME CG13398 UPSTREAM CG13397 DOWNSTREAM CG13398
2R	17590905	2R_17590905_SNP [dm3] 2R_21703400_SNP [dm6]	T	A	3.713e^-4	0.881	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
X	14330866	X_14330866_SNP [dm3] X_14436833_SNP [dm6]	G	A	3.725e^-4	0.881	INTRON dpr8
3L	16639701	3L_16639701_SNP [dm3] 3L_16646601_SNP [dm6]	G	A	3.727e^-4	0.881	INTRON Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13572069	2L_13572069_SNP [dm3] 2L_13572069_SNP [dm6]	T	A	3.728e^-4	0.881	INTRON kuz
2R	10530035	2R_10530035_SNP [dm3] 2R_14642530_SNP [dm6]	C	T	3.729e^-4	0.881	INTERGENIC
3R	24209878	3R_24209878_SNP [dm3] 3R_28384156_SNP [dm6]	A	G	3.739e^-4	0.881	INTERGENIC
2R	12825852	2R_12825852_SNP [dm3] 2R_16938347_SNP [dm6]	C	A	3.739e^-4	0.881	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3R	7749956	3R_7749956_SNP [dm3] 3R_11924234_SNP [dm6]	A	T	3.739e^-4	0.881	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
3R	10773103	3R_10773103_SNP [dm3] 3R_14947381_SNP [dm6]	C	T	3.750e^-4	0.881	INTERGENIC
2L	19095222	2L_19095222_DEL [dm3] 2L_19095222_DEL [dm6]	AA	A	3.755e^-4	0.881	INTRON Lim3	TF binding site mE1_TFBS_cad
2R	1244817	2R_1244817_DEL [dm3] 2R_5357312_DEL [dm6]	GCG	G	3.759e^-4	0.881	INTERGENIC
2L	8996165	2L_8996165_SNP [dm3] 2L_8996165_SNP [dm6]	G	C	3.764e^-4	0.881	DOWNSTREAM CG17906 INTRON alien	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7414000	3L_7414000_SNP [dm3] 3L_7420900_SNP [dm6]	A	C	3.767e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	7326840	2R_7326840_DEL [dm3] 2R_11439335_DEL [dm6]	TAT	A	3.768e^-4	0.881	INTRON CG7777
3L	13829682	3L_13829682_SNP [dm3] 3L_13836582_SNP [dm6]	T	A	3.769e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13642584	3R_13642584_SNP [dm3] 3R_17816862_SNP [dm6]	C	T	3.776e^-4	0.881	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2872597	2L_2872597_SNP [dm3] 2L_2872597_SNP [dm6]	T	G	3.779e^-4	0.881	INTRON CG31694	TF binding site BDTNP1_TFBS_twi
3R	22991640	3R_22991640_SNP [dm3] 3R_27165918_SNP [dm6]	A	G	3.779e^-4	0.881	NON_SYNONYMOUS_CODING spn-D UPSTREAM CG34293 DOWNSTREAM ppk31	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	1900520	3L_1900520_SNP [dm3] 3L_1900520_SNP [dm6]	G	A	3.785e^-4	0.881	UTR_3_PRIME CG1887 INTRON CG1887
3L	17577609	3L_17577609_SNP [dm3] 3L_17584509_SNP [dm6]	T	A	3.791e^-4	0.881	INTRON Eip74EF
X	9767543	X_9767543_SNP [dm3] X_9873510_SNP [dm6]	T	A	3.792e^-4	0.881	UTR_3_PRIME CG32695 DOWNSTREAM CG32695 & 1 other
2R	12592226	2R_12592226_SNP [dm3] 2R_16704721_SNP [dm6]	T	G	3.793e^-4	0.881	INTRON CG30463
2R	12563467	2R_12563467_SNP [dm3] 2R_16675962_SNP [dm6]	T	G	3.798e^-4	0.881	INTRON CG30463
X	14329902	X_14329902_SNP [dm3] X_14435869_SNP [dm6]	G	A	3.802e^-4	0.881	INTRON dpr8
3R	22878828	3R_22878828_SNP [dm3] 3R_27053106_SNP [dm6]	T	G	3.805e^-4	0.881	INTRON RYa-R
3R	16533126	3R_16533126_SNP [dm3] 3R_20707404_SNP [dm6]	A	T	3.810e^-4	0.881	INTRON Oamb
2L	1556098	2L_1556098_SNP [dm3] 2L_1556098_SNP [dm6]	G	T	3.811e^-4	0.881	INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	5185419	2L_5185419_SNP [dm3] 2L_5185419_SNP [dm6]	A	G	3.813e^-4	0.881	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12258226	2L_12258226_SNP [dm3] 2L_12258226_SNP [dm6]	T	C	3.826e^-4	0.881	INTRON aret
3L	12053921	3L_12053921_SNP [dm3] 3L_12060821_SNP [dm6]	C	A	3.827e^-4	0.881	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	16435894	3L_16435894_SNP [dm3] 3L_16442794_SNP [dm6]	T	A	3.829e^-4	0.881	INTRON CG33158 & 1 other
X	22199453	X_22199453_SNP [dm3] X_22797617_SNP [dm6]	A	G	3.832e^-4	0.881	EXON CR44997
3R	17318104	3R_17318104_SNP [dm3] 3R_21492382_SNP [dm6]	A	C	3.835e^-4	0.881	INTERGENIC
2L	5686897	2L_5686897_SNP [dm3] 2L_5686897_SNP [dm6]	T	A	3.846e^-4	0.881	INTERGENIC
3R	16005991	3R_16005991_SNP [dm3] 3R_20180269_SNP [dm6]	A	G	3.854e^-4	0.881	INTERGENIC
3L	6471148	3L_6471148_SNP [dm3] 3L_6478048_SNP [dm6]	A	T	3.856e^-4	0.881	INTRON CG42747
3R	10211150	3R_10211150_SNP [dm3] 3R_14385428_SNP [dm6]	T	C	3.864e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14627519	3L_14627519_SNP [dm3] 3L_14634419_SNP [dm6]	T	G	3.868e^-4	0.881	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6025191	3L_6025191_SNP [dm3] 3L_6032091_SNP [dm6]	A	C	3.868e^-4	0.881	INTERGENIC
3L	13245568	3L_13245568_SNP [dm3] 3L_13252468_SNP [dm6]	A	G	3.869e^-4	0.881	INTRON caps
2L	2895663	2L_2895663_SNP [dm3] 2L_2895663_SNP [dm6]	G	A	3.875e^-4	0.881	INTRON lilli	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8260670	2L_8260670_SNP [dm3] 2L_8260670_SNP [dm6]	T	A	3.882e^-4	0.881	INTRON Btk29A
3R	10773129	3R_10773129_SNP [dm3] 3R_14947407_SNP [dm6]	C	T	3.884e^-4	0.881	INTERGENIC
3R	17841204	3R_17841204_SNP [dm3] 3R_22015482_SNP [dm6]	A	G	3.887e^-4	0.881	SPLICE_SITE_REGION CG6332 DOWNSTREAM Eip93F & 1 other INTRON CG6332	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	7413988	3L_7413988_SNP [dm3] 3L_7420888_SNP [dm6]	A	C	3.893e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	9891841	3R_9891841_SNP [dm3] 3R_14066119_SNP [dm6]	G	A	3.894e^-4	0.881	INTRON foxo
3L	18078333	3L_18078333_SNP [dm3] 3L_18085233_SNP [dm6]	T	C	3.904e^-4	0.881	DOWNSTREAM CR32194 EXON CR43253
3R	8374271	3R_8374271_SNP [dm3] 3R_12548549_SNP [dm6]	G	C	3.905e^-4	0.881	UPSTREAM Octbeta3R INTERGENIC
3R	7126187	3R_7126187_SNP [dm3] 3R_11300465_SNP [dm6]	T	G	3.924e^-4	0.881	INTRON CR31386
3R	13299211	3R_13299211_SNP [dm3] 3R_17473489_SNP [dm6]	A	C	3.932e^-4	0.881	DOWNSTREAM Dscam3 INTERGENIC
3L	6025144	3L_6025144_SNP [dm3] 3L_6032044_SNP [dm6]	C	T	3.934e^-4	0.881	INTERGENIC
2L	21643658	2L_21643658_SNP [dm3] 2L_21643658_SNP [dm6]	G	A	3.936e^-4	0.881	INTRON Ac3
3R	17316752	3R_17316752_SNP [dm3] 3R_21491030_SNP [dm6]	T	C	3.937e^-4	0.881	INTERGENIC
3L	5857906	3L_5857906_SNP [dm3] 3L_5864806_SNP [dm6]	T	A	3.949e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7390459	3L_7390459_SNP [dm3] 3L_7397359_SNP [dm6]	A	G	3.952e^-4	0.881	UPSTREAM CG8562 INTRON CG32379
3R	1686585	3R_1686585_INS [dm3] 3R_5860863_INS [dm6]	C	CCTC	3.956e^-4	0.881	INTRON CG2017
2L	8247847	2L_8247847_SNP [dm3] 2L_8247847_SNP [dm6]	A	T	3.959e^-4	0.881	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	955057	2L_955057_SNP [dm3] 2L_955057_SNP [dm6]	T	C	3.964e^-4	0.881	INTRON CG4341
2R	19152254	2R_19152254_SNP [dm3] 2R_23264731_SNP [dm6]	A	G	3.964e^-4	0.881	SYNONYMOUS_CODING CG12782	TF binding site mE1_TFBS_chinmo
2R	12053917	2R_12053917_SNP [dm3] 2R_16166412_SNP [dm6]	T	C	3.964e^-4	0.881	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad
X	14939440	X_14939440_SNP [dm3] X_15045407_SNP [dm6]	T	A	3.971e^-4	0.881	INTRON hiw & 1 other
2L	1557016	2L_1557016_SNP [dm3] 2L_1557016_SNP [dm6]	A	C	3.975e^-4	0.881	INTRON haf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16371746	3L_16371746_SNP [dm3] 3L_16378646_SNP [dm6]	G	A	3.977e^-4	0.881	UPSTREAM roq DOWNSTREAM CG4753 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25158285	3R_25158285_SNP [dm3] 3R_29332563_SNP [dm6]	A	T	3.988e^-4	0.881	INTERGENIC
2L	4294524	2L_4294524_SNP [dm3] 2L_4294524_SNP [dm6]	C	G	3.989e^-4	0.881	INTRON tutl
X	18829190	X_18829190_SNP [dm3] X_18935157_SNP [dm6]	A	C	3.992e^-4	0.881	INTRON CG43759
2R	5050682	2R_5050682_SNP [dm3] 2R_9163177_SNP [dm6]	C	A	3.995e^-4	0.881	NON_SYNONYMOUS_CODING CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22961802	3R_22961802_SNP [dm3] 3R_27136080_SNP [dm6]	A	T	3.999e^-4	0.881	INTRON CG6051
X	2932752	X_2932752_SNP [dm3] X_3038719_SNP [dm6]	T	G	4.001e^-4	0.881	INTRON kirre
2L	7458617	2L_7458617_SNP [dm3] 2L_7458617_SNP [dm6]	G	A	4.025e^-4	0.881	SYNONYMOUS_CODING Gr28b INTRON Gr28b
2R	7028783	2R_7028783_SNP [dm3] 2R_11141278_SNP [dm6]	G	C	4.027e^-4	0.881	SYNONYMOUS_CODING CG13229
2R	1538809	2R_1538809_SNP [dm3] 2R_5651304_SNP [dm6]	T	C	4.034e^-4	0.881	INTRON CG11665
2R	1538833	2R_1538833_SNP [dm3] 2R_5651328_SNP [dm6]	C	T	4.034e^-4	0.881	INTRON CG11665
X	7257616	X_7257616_SNP [dm3] X_7363583_SNP [dm6]	C	T	4.042e^-4	0.881	INTRON CG1677 & 1 other
2L	19095251	2L_19095251_SNP [dm3] 2L_19095251_SNP [dm6]	G	A	4.043e^-4	0.881	INTRON Lim3	TF binding site mE1_TFBS_cad
3R	21765199	3R_21765199_SNP [dm3] 3R_25939477_SNP [dm6]	T	A	4.056e^-4	0.881	INTRON CCAP-R
X	1605762	X_1605762_SNP [dm3] X_1711729_SNP [dm6]	C	A	4.059e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	16041816	2L_16041816_SNP [dm3] 2L_16041816_SNP [dm6]	G	A	4.063e^-4	0.881	UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic INTERGENIC
2R	12469137	2R_12469137_SNP [dm3] 2R_16581632_SNP [dm6]	G	T	4.067e^-4	0.881	DOWNSTREAM CR44375 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	515205	3R_515205_SNP [dm3] 3R_4689483_SNP [dm6]	A	G	4.068e^-4	0.881	DOWNSTREAM CG33927 INTRON CG43427
3R	24804915	3R_24804915_SNP [dm3] 3R_28979193_SNP [dm6]	T	C	4.069e^-4	0.881	INTERGENIC
2L	4180568	2L_4180568_SNP [dm3] 2L_4180568_SNP [dm6]	C	T	4.075e^-4	0.881	INTERGENIC
3L	16435860	3L_16435860_SNP [dm3] 3L_16442760_SNP [dm6]	A	C	4.077e^-4	0.881	INTRON CG33158 & 1 other
2L	7464604	2L_7464604_SNP [dm3] 2L_7464604_SNP [dm6]	A	G	4.081e^-4	0.881	INTERGENIC
2L	8054459	2L_8054459_SNP [dm3] 2L_8054459_SNP [dm6]	A	G	4.082e^-4	0.881	UTR_3_PRIME poe DOWNSTREAM CG7466	TF binding site mE1_TFBS_cad
3L	1881589	3L_1881589_SNP [dm3] 3L_1881589_SNP [dm6]	G	A	4.083e^-4	0.881	INTRON CG13937
2R	20134903	2R_20134903_SNP [dm3] 2R_24247380_SNP [dm6]	C	T	4.083e^-4	0.881	INTRON nord
2R	12905532	2R_12905532_SNP [dm3] 2R_17018027_SNP [dm6]	T	A	4.087e^-4	0.881	INTRON CG8963	TF binding site BDTNP1_TFBS_dl
3R	20319871	3R_20319871_SNP [dm3] 3R_24494149_SNP [dm6]	C	T	4.095e^-4	0.881	INTERGENIC
2L	1576292	2L_1576292_SNP [dm3] 2L_1576292_SNP [dm6]	G	A	4.096e^-4	0.881	INTRON haf
3L	12053897	3L_12053897_SNP [dm3] 3L_12060797_SNP [dm6]	C	T	4.103e^-4	0.881	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	1539082	2R_1539082_SNP [dm3] 2R_5651577_SNP [dm6]	C	T	4.106e^-4	0.881	INTRON CG11665	TF binding site mE1_TFBS_zfh1 transposable element FlyBase
2L	9417610	2L_9417610_SNP [dm3] 2L_9417610_SNP [dm6]	G	A	4.111e^-4	0.881	INTRON Mco1
X	17052368	X_17052368_SNP [dm3] X_17158335_SNP [dm6]	A	G	4.127e^-4	0.881	SYNONYMOUS_CODING xmas-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20274441	X_20274441_SNP [dm3] X_20403414_SNP [dm6]	A	C	4.128e^-4	0.881	SYNONYMOUS_CODING HERC2	TF binding site mE1_TFBS_chinmo
2L	7523049	2L_7523049_SNP [dm3] 2L_7523049_SNP [dm6]	A	T	4.140e^-4	0.881	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13831337	3L_13831337_SNP [dm3] 3L_13838237_SNP [dm6]	G	C	4.143e^-4	0.881	DOWNSTREAM CG43184 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12586279	2R_12586279_SNP [dm3] 2R_16698774_SNP [dm6]	G	C	4.149e^-4	0.881	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9222158	3L_9222158_SNP [dm3] 3L_9229058_SNP [dm6]	T	G	4.164e^-4	0.881	INTERGENIC
3L	2147335	3L_2147335_DEL [dm3] 3L_2147335_DEL [dm6]	AGATA	A	4.174e^-4	0.881	INTRON zormin
2L	7573012	2L_7573012_SNP [dm3] 2L_7573012_SNP [dm6]	T	A	4.175e^-4	0.881	INTRON RapGAP1
2R	18519231	2R_18519231_SNP [dm3] 2R_22631726_SNP [dm6]	C	G	4.178e^-4	0.881	SYNONYMOUS_CODING CG33143	TF binding site mE1_TFBS_chinmo
3L	12829510	3L_12829510_SNP [dm3] 3L_12836410_SNP [dm6]	C	G	4.200e^-4	0.881	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	13248698	3L_13248698_SNP [dm3] 3L_13255598_SNP [dm6]	T	C	4.209e^-4	0.881	INTRON caps
3L	2336958	3L_2336958_SNP [dm3] 3L_2336958_SNP [dm6]	C	T	4.211e^-4	0.881	INTRON MsR1
3R	13526273	3R_13526273_SNP [dm3] 3R_17700551_SNP [dm6]	A	T	4.226e^-4	0.881	INTRON osa	TF binding site BDTNP1_TFBS_dl
2R	15120383	2R_15120383_SNP [dm3] 2R_19232878_SNP [dm6]	C	T	4.228e^-4	0.881	INTRON cora	TF binding site mE1_TFBS_HSA
2L	13092313	2L_13092313_SNP [dm3] 2L_13092313_SNP [dm6]	T	A	4.236e^-4	0.881	INTERGENIC
2L	7522845	2L_7522845_SNP [dm3] 2L_7522845_SNP [dm6]	C	T	4.238e^-4	0.881	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22893296	3R_22893296_SNP [dm3] 3R_27067574_SNP [dm6]	G	T	4.242e^-4	0.881	INTRON spz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16468204	3L_16468204_SNP [dm3] 3L_16475104_SNP [dm6]	T	A	4.246e^-4	0.881	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6773500	X_6773500_SNP [dm3] X_6879467_SNP [dm6]	G	A	4.248e^-4	0.881	SYNONYMOUS_CODING CG43736 UTR_3_PRIME CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19698650	3R_19698650_SNP [dm3] 3R_23872928_SNP [dm6]	T	A	4.249e^-4	0.881	INTRON Pli	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5408313	2R_5408313_SNP [dm3] 2R_9520808_SNP [dm6]	T	A	4.250e^-4	0.881	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7287399	X_7287399_SNP [dm3] X_7393366_SNP [dm6]	C	A	4.251e^-4	0.881	INTRON CG1677 & 1 other
2R	14531269	2R_14531269_SNP [dm3] 2R_18643764_SNP [dm6]	T	C	4.252e^-4	0.881	INTRON SP2637
2R	3256350	2R_3256350_SNP [dm3] 2R_7368845_SNP [dm6]	T	C	4.254e^-4	0.881	INTRON Dscam1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	5874892	3L_5874892_SNP [dm3] 3L_5881792_SNP [dm6]	C	T	4.261e^-4	0.881	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5288357	3L_5288357_SNP [dm3] 3L_5295257_SNP [dm6]	G	A	4.268e^-4	0.881	INTERGENIC
3R	12922202	3R_12922202_SNP [dm3] 3R_17096480_SNP [dm6]	T	A	4.284e^-4	0.881	UPSTREAM cher INTRON cher
3L	10284759	3L_10284759_SNP [dm3] 3L_10291659_SNP [dm6]	C	A	4.286e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22992275	3R_22992275_SNP [dm3] 3R_27166553_SNP [dm6]	T	C	4.291e^-4	0.881	UPSTREAM CG34293 INTRON spn-D	regulatory region REDfly_CRMs
3L	1403315	3L_1403315_SNP [dm3] 3L_1403315_SNP [dm6]	C	T	4.299e^-4	0.881	INTRON Ptp61F
3R	21754914	3R_21754914_SNP [dm3] 3R_25929192_SNP [dm6]	T	G	4.302e^-4	0.881	INTRON CCAP-R
2L	15611158	2L_15611158_SNP [dm3] 2L_15611158_SNP [dm6]	A	G	4.307e^-4	0.881	SYNONYMOUS_CODING CG15255 DOWNSTREAM CR44865
2R	15235169	2R_15235169_SNP [dm3] 2R_19347664_SNP [dm6]	T	C	4.308e^-4	0.881	INTRON Rgk1
2R	12842313	2R_12842313_SNP [dm3] 2R_16954808_SNP [dm6]	C	G	4.312e^-4	0.881	SYNONYMOUS_CODING mute UPSTREAM PIG-V	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	8358314	3R_8358314_SNP [dm3] 3R_12532592_SNP [dm6]	G	A	4.313e^-4	0.881	INTRON Octbeta3R
2L	3319071	2L_3319071_SNP [dm3] 2L_3319071_SNP [dm6]	T	A	4.319e^-4	0.881	SYNONYMOUS_CODING CG3326
2R	12089742	2R_12089742_SNP [dm3] 2R_16202237_SNP [dm6]	A	C	4.325e^-4	0.881	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6093402	3L_6093402_SNP [dm3] 3L_6100302_SNP [dm6]	C	G	4.326e^-4	0.881	INTRON Ets65A
X	14945775	X_14945775_SNP [dm3] X_15051742_SNP [dm6]	G	C	4.327e^-4	0.881	UTR_3_PRIME CG5541 INTRON hiw
3R	8733829	3R_8733829_SNP [dm3] 3R_12908107_SNP [dm6]	G	A	4.332e^-4	0.881	INTERGENIC
3L	10475241	3L_10475241_SNP [dm3] 3L_10482141_SNP [dm6]	C	G	4.338e^-4	0.881	INTRON A2bp1
X	7534350	X_7534350_SNP [dm3] X_7640317_SNP [dm6]	T	A	4.342e^-4	0.881	INTRON ct
3R	12024931	3R_12024931_SNP [dm3] 3R_16199209_SNP [dm6]	G	T	4.344e^-4	0.881	INTRON CG6126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10410693	3L_10410693_SNP [dm3] 3L_10417593_SNP [dm6]	G	A	4.344e^-4	0.881	INTERGENIC
3L	10166258	3L_10166258_SNP [dm3] 3L_10173158_SNP [dm6]	C	A	4.346e^-4	0.881	INTRON dpr10
3L	5872674	3L_5872674_SNP [dm3] 3L_5879574_SNP [dm6]	T	G	4.355e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10812311	X_10812311_SNP [dm3] X_10918278_SNP [dm6]	A	T	4.356e^-4	0.881	NON_SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16373027	2L_16373027_INS [dm3] 2L_16373027_INS [dm6]	C	CAAAGC	4.360e^-4	0.881	INTERGENIC
2L	17721120	2L_17721120_SNP [dm3] 2L_17721120_SNP [dm6]	G	A	4.369e^-4	0.881	INTRON CadN
3R	19041810	3R_19041810_SNP [dm3] 3R_23216088_SNP [dm6]	A	T	4.377e^-4	0.881	INTRON cnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	12446656	X_12446656_SNP [dm3] X_12552623_SNP [dm6]	T	C	4.381e^-4	0.881	UPSTREAM Cpr11B INTRON CG43921
X	12446669	X_12446669_SNP [dm3] X_12552636_SNP [dm6]	T	C	4.381e^-4	0.881	UPSTREAM Cpr11B INTRON CG43921
X	12446674	X_12446674_SNP [dm3] X_12552641_SNP [dm6]	C	G	4.381e^-4	0.881	UPSTREAM Cpr11B INTRON CG43921
3R	25156884	3R_25156884_SNP [dm3] 3R_29331162_SNP [dm6]	G	A	4.381e^-4	0.881	INTERGENIC
X	14937925	X_14937925_SNP [dm3] X_15043892_SNP [dm6]	A	G	4.385e^-4	0.881	UPSTREAM CG5541 INTRON hiw	TF binding site mE1_TFBS_Trl
2L	1717309	2L_1717309_SNP [dm3] 2L_1717309_SNP [dm6]	T	C	4.394e^-4	0.881	INTRON Rim2
2L	22177585	2L_22177585_SNP [dm3] 2L_22177585_SNP [dm6]	C	A	4.396e^-4	0.881	INTRON CG3635	transposable element FlyBase
2L	11495209	2L_11495209_SNP [dm3] 2L_11495209_SNP [dm6]	C	A	4.398e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1411266	2L_1411266_INS [dm3] 2L_1411266_INS [dm6]	T	TT	4.398e^-4	0.881	INTRON lea	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	7545355	2R_7545355_SNP [dm3] 2R_11657850_SNP [dm6]	C	T	4.403e^-4	0.881	INTRON Roc2	TF binding site BDTNP1_TFBS_dl
X	14943233	X_14943233_SNP [dm3] X_15049200_SNP [dm6]	C	T	4.405e^-4	0.881	SYNONYMOUS_CODING CG5541 INTRON hiw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	1576335	2L_1576335_SNP [dm3] 2L_1576335_SNP [dm6]	T	C	4.415e^-4	0.881	INTRON haf
X	17400660	X_17400660_INS [dm3] X_17506627_INS [dm6]	T	TTTTTTTTCT	4.416e^-4	0.881	UTR_5_PRIME CG43658 INTRON CG43658	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8369162	3L_8369162_SNP [dm3] 3L_8376062_SNP [dm6]	T	C	4.417e^-4	0.881	INTRON ImpE1
2L	20749685	2L_20749685_SNP [dm3] 2L_20749685_SNP [dm6]	C	A	4.418e^-4	0.881	UTR_3_PRIME Fs_2_Ket	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10425276	3L_10425276_SNP [dm3] 3L_10432176_SNP [dm6]	G	A	4.423e^-4	0.881	UPSTREAM Ir67b DOWNSTREAM Ir67c INTERGENIC
X	14945763	X_14945763_SNP [dm3] X_15051730_SNP [dm6]	C	T	4.426e^-4	0.881	UTR_3_PRIME CG5541 INTRON hiw
2L	21744325	2L_21744325_SNP [dm3] 2L_21744325_SNP [dm6]	T	G	4.429e^-4	0.881	INTRON step	TF binding site mE1_TFBS_kn transposable element FlyBase
2L	954317	2L_954317_SNP [dm3] 2L_954317_SNP [dm6]	C	A	4.432e^-4	0.881	INTRON CG4341	TF binding site mE1_TFBS_HSA
3R	25434107	3R_25434107_SNP [dm3] 3R_29608385_SNP [dm6]	A	C	4.436e^-4	0.881	UPSTREAM Diedel2 INTRON alph
2R	7378102	2R_7378102_SNP [dm3] 2R_11490597_SNP [dm6]	A	G	4.440e^-4	0.881	INTRON inv
X	17448631	X_17448631_SNP [dm3] X_17554598_SNP [dm6]	A	G	4.444e^-4	0.881	INTRON CG43658	transposable element FlyBase
2R	8104197	2R_8104197_SNP [dm3] 2R_12216692_SNP [dm6]	G	A	4.444e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2471722	3L_2471722_SNP [dm3] 3L_2471722_SNP [dm6]	A	C	4.450e^-4	0.881	INTRON CG45186	TF binding site mE1_TFBS_HSA
2R	12563469	2R_12563469_SNP [dm3] 2R_16675964_SNP [dm6]	T	C	4.458e^-4	0.881	INTRON CG30463
3R	17393639	3R_17393639_SNP [dm3] 3R_21567917_SNP [dm6]	T	A	4.468e^-4	0.881	INTRON CG15498
2R	9813159	2R_9813159_SNP [dm3] 2R_13925654_SNP [dm6]	T	C	4.469e^-4	0.881	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	1797238	3R_1797238_SNP [dm3] 3R_5971516_SNP [dm6]	C	T	4.471e^-4	0.881	DOWNSTREAM CR44926 & 1 other INTERGENIC
3R	13669127	3R_13669127_SNP [dm3] 3R_17843405_SNP [dm6]	G	A	4.472e^-4	0.881	INTRON tinc
2L	7568147	2L_7568147_SNP [dm3] 2L_7568147_SNP [dm6]	G	A	4.473e^-4	0.881	INTRON RapGAP1
3L	15065245	3L_15065245_SNP [dm3] 3L_15072145_SNP [dm6]	G	A	4.480e^-4	0.881	START_GAINED cp309 UTR_5_PRIME cp309 INTRON cp309	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	7539857	2L_7539857_SNP [dm3] 2L_7539857_SNP [dm6]	T	A	4.489e^-4	0.881	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17602063	3L_17602063_SNP [dm3] 3L_17608963_SNP [dm6]	G	T	4.494e^-4	0.881	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16041810	2L_16041810_SNP [dm3] 2L_16041810_SNP [dm6]	T	C	4.496e^-4	0.881	UPSTREAM BicC & 1 other DOWNSTREAM beat-Ic INTERGENIC
2L	7567887	2L_7567887_SNP [dm3] 2L_7567887_SNP [dm6]	A	G	4.507e^-4	0.881	INTRON RapGAP1
2L	5880260	2L_5880260_SNP [dm3] 2L_5880260_SNP [dm6]	G	T	4.508e^-4	0.881	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23399138	3R_23399138_SNP [dm3] 3R_27573416_SNP [dm6]	G	A	4.509e^-4	0.881	INTRON wdb
2R	12585969	2R_12585969_SNP [dm3] 2R_16698464_SNP [dm6]	G	A	4.512e^-4	0.881	INTRON CG30463
2L	19095219	2L_19095219_SNP [dm3] 2L_19095219_SNP [dm6]	T	C	4.519e^-4	0.882	INTRON Lim3	TF binding site mE1_TFBS_cad
X	4143724	X_4143724_DEL [dm3] X_4249691_DEL [dm6]	ATCCCCAGA	A	4.530e^-4	0.882	INTERGENIC
2R	12541399	2R_12541399_SNP [dm3] 2R_16653894_SNP [dm6]	T	G	4.539e^-4	0.882	NON_SYNONYMOUS_CODING Nach
2R	4663760	2R_4663760_INS [dm3] 2R_8776255_INS [dm6]	C	CAA	4.540e^-4	0.882	INTERGENIC
2L	8256158	2L_8256158_SNP [dm3] 2L_8256158_SNP [dm6]	A	C	4.544e^-4	0.882	INTRON CG8086
3L	3534909	3L_3534909_SNP [dm3] 3L_3534909_SNP [dm6]	T	C	4.544e^-4	0.882	INTRON Eip63E
3R	23405685	3R_23405685_SNP [dm3] 3R_27579963_SNP [dm6]	T	C	4.559e^-4	0.883	INTRON wdb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20780565	3L_20780565_SNP [dm3] 3L_20787465_SNP [dm6]	G	A	4.559e^-4	0.883	SYNONYMOUS_CODING CG11396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6570607	2L_6570607_SNP [dm3] 2L_6570607_SNP [dm6]	A	G	4.565e^-4	0.883	UTR_3_PRIME CG11319 INTRON CG11319	TF binding site BDTNP1_TFBS_hb
2L	7523044	2L_7523044_SNP [dm3] 2L_7523044_SNP [dm6]	T	A	4.567e^-4	0.883	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22051642	3R_22051642_SNP [dm3] 3R_26225920_SNP [dm6]	A	C	4.573e^-4	0.883	INTERGENIC
3R	12724003	3R_12724003_SNP [dm3] 3R_16898281_SNP [dm6]	T	G	4.575e^-4	0.883	DOWNSTREAM CR43617 INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_Trl
3R	22978872	3R_22978872_SNP [dm3] 3R_27153150_SNP [dm6]	A	C	4.580e^-4	0.883	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26532706	3R_26532706_SNP [dm3] 3R_30706984_SNP [dm6]	C	T	4.598e^-4	0.883	UPSTREAM CG31010 INTERGENIC
3R	20766945	3R_20766945_SNP [dm3] 3R_24941223_SNP [dm6]	T	C	4.598e^-4	0.883	SYNONYMOUS_CODING ssh	TF binding site mE1_TFBS_cad
3R	18924640	3R_18924640_SNP [dm3] 3R_23098918_SNP [dm6]	C	G	4.601e^-4	0.883	UPSTREAM CG6738 INTRON CG13830 & 1 other
3L	2336948	3L_2336948_SNP [dm3] 3L_2336948_SNP [dm6]	T	G	4.603e^-4	0.883	INTRON MsR1
2L	7465705	2L_7465705_SNP [dm3] 2L_7465705_SNP [dm6]	C	T	4.632e^-4	0.884	UPSTREAM CG6055 INTERGENIC
2R	3887056	2R_3887056_SNP [dm3] 2R_7999551_SNP [dm6]	C	T	4.635e^-4	0.884	DOWNSTREAM CG11191 INTERGENIC
2L	4005630	2L_4005630_SNP [dm3] 2L_4005630_SNP [dm6]	A	G	4.636e^-4	0.884	UTR_3_PRIME CG15422 UPSTREAM CG15423
2L	357324	2L_357324_SNP [dm3] 2L_357324_SNP [dm6]	C	T	4.641e^-4	0.884	UPSTREAM CR45366 DOWNSTREAM CR45367 INTRON Ent1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14323017	3R_14323017_SNP [dm3] 3R_18497295_SNP [dm6]	A	G	4.653e^-4	0.884	INTRON fru	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1568019	2L_1568019_SNP [dm3] 2L_1568019_SNP [dm6]	A	C	4.654e^-4	0.884	INTRON haf
2L	15973885	2L_15973885_SNP [dm3] 2L_15973885_SNP [dm6]	G	C	4.673e^-4	0.884	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	21798807	3R_21798807_SNP [dm3] 3R_25973085_SNP [dm6]	C	A	4.679e^-4	0.884	INTRON CG42261	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12631014	3L_12631014_DEL [dm3] 3L_12637914_DEL [dm6]	TT	T	4.683e^-4	0.884	INTRON CR32111
3L	12777286	3L_12777286_SNP [dm3] 3L_12784186_SNP [dm6]	C	T	4.686e^-4	0.884	SYNONYMOUS_CODING CG17666 DOWNSTREAM Atg1
X	4524217	X_4524217_SNP [dm3] X_4630184_SNP [dm6]	G	T	4.687e^-4	0.884	NON_SYNONYMOUS_CODING CG12184 DOWNSTREAM CG12179
2R	16398358	2R_16398358_SNP [dm3] 2R_20510853_SNP [dm6]	C	A	4.689e^-4	0.884	UPSTREAM CR44648 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7523045	2L_7523045_SNP [dm3] 2L_7523045_SNP [dm6]	T	A	4.695e^-4	0.884	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9272718	2L_9272718_SNP [dm3] 2L_9272718_SNP [dm6]	T	C	4.697e^-4	0.884	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3L	14596068	3L_14596068_SNP [dm3] 3L_14602968_SNP [dm6]	C	G	4.705e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	5572655	2L_5572655_SNP [dm3] 2L_5572655_SNP [dm6]	T	C	4.708e^-4	0.884	INTERGENIC
3R	2890787	3R_2890787_SNP [dm3] 3R_7065065_SNP [dm6]	T	C	4.711e^-4	0.884	SYNONYMOUS_CODING CG1105 DOWNSTREAM CG1988	TF binding site mE1_TFBS_cad
X	11753205	X_11753205_SNP [dm3] X_11859172_SNP [dm6]	A	T	4.714e^-4	0.884	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	9790564	3R_9790564_SNP [dm3] 3R_13964842_SNP [dm6]	C	A	4.716e^-4	0.884	UPSTREAM Orc2 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	12331237	X_12331237_SNP [dm3] X_12437204_SNP [dm6]	C	A	4.717e^-4	0.884	INTRON Pkcdelta
3R	1769160	3R_1769160_INS [dm3] 3R_5943438_INS [dm6]	A	CGG	4.718e^-4	0.884	INTRON CG34113
3L	16371885	3L_16371885_SNP [dm3] 3L_16378785_SNP [dm6]	A	C	4.718e^-4	0.884	UPSTREAM roq DOWNSTREAM CG4753 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	14944947	X_14944947_SNP [dm3] X_15050914_SNP [dm6]	C	T	4.722e^-4	0.884	SYNONYMOUS_CODING CG5541 INTRON hiw	TF binding site mE1_TFBS_sens

Missing results

By genomic position
Variant impact
Gene name

midgut_mitosis_PA phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results