DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.226e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1973 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	6275408	2R_6275408_SNP [dm3] 2R_10387903_SNP [dm6]	G	T	1.751e^-6	0.718	INTRON CG42732
3L	1975229	3L_1975229_SNP [dm3] 3L_1975229_SNP [dm6]	G	A	1.832e^-6	0.718	DOWNSTREAM CG1139 INTERGENIC
3L	13583477	3L_13583477_SNP [dm3] 3L_13590377_SNP [dm6]	A	G	2.103e^-6	0.718	INTRON bru-3
3R	17993765	3R_17993765_SNP [dm3] 3R_22168043_SNP [dm6]	A	G	2.275e^-6	0.718	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	6155137	2R_6155137_SNP [dm3] 2R_10267632_SNP [dm6]	T	G	2.491e^-6	0.718	INTRON CG12910
3L	10188286	3L_10188286_SNP [dm3] 3L_10195186_SNP [dm6]	C	T	2.509e^-6	0.718	INTRON ect
X	611059	X_611059_SNP [dm3] X_717026_SNP [dm6]	G	A	3.734e^-6	0.718	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2045569	3L_2045569_SNP [dm3] 3L_2045569_SNP [dm6]	A	G	4.332e^-6	0.718	SYNONYMOUS_CODING sls INTRON sls
X	8211850	X_8211850_SNP [dm3] X_8317817_SNP [dm6]	C	T	4.894e^-6	0.718	INTRON nAChRalpha3
X	620144	X_620144_SNP [dm3] X_726111_SNP [dm6]	G	A	5.886e^-6	0.718	INTRON sdk
3L	14076367	3L_14076367_SNP [dm3] 3L_14083267_SNP [dm6]	A	G	6.036e^-6	0.718	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
3R	27249398	3R_27249398_SNP [dm3] 3R_31423676_SNP [dm6]	C	A	6.074e^-6	0.718	INTRON Gprk2
2R	6733794	2R_6733794_SNP [dm3] 2R_10846289_SNP [dm6]	G	C	6.479e^-6	0.718	INTRON CG30015	TF binding site mE1_TFBS_cad
3L	7422298	3L_7422298_SNP [dm3] 3L_7429198_SNP [dm6]	T	A	7.220e^-6	0.718	INTRON CG42458
3R	10124374	3R_10124374_SNP [dm3] 3R_14298652_SNP [dm6]	A	T	7.525e^-6	0.718	UTR_5_PRIME CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6173826	3L_6173826_SNP [dm3] 3L_6180726_SNP [dm6]	A	T	7.757e^-6	0.718	NON_SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5358891	X_5358891_SNP [dm3] X_5464858_SNP [dm6]	G	C	7.832e^-6	0.718	UTR_5_PRIME SPR INTRON SPR
X	616267	X_616267_DEL [dm3] X_722234_DEL [dm6]	ACC	T	8.517e^-6	0.718	INTRON sdk
2L	9087332	2L_9087332_SNP [dm3] 2L_9087332_SNP [dm6]	G	T	8.541e^-6	0.718	NON_SYNONYMOUS_CODING Toll-4
2R	6275262	2R_6275262_SNP [dm3] 2R_10387757_SNP [dm6]	A	T	8.564e^-6	0.718	INTRON CG42732
X	5358881	X_5358881_SNP [dm3] X_5464848_SNP [dm6]	C	G	9.867e^-6	0.718	UTR_5_PRIME SPR INTRON SPR
2L	9086844	2L_9086844_SNP [dm3] 2L_9086844_SNP [dm6]	A	G	1.108e^-5	0.718	NON_SYNONYMOUS_CODING Toll-4
X	8164713	X_8164713_SNP [dm3] X_8270680_SNP [dm6]	A	T	1.155e^-5	0.718	NON_SYNONYMOUS_CODING Corp INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6174022	3L_6174022_SNP [dm3] 3L_6180922_SNP [dm6]	G	A	1.191e^-5	0.718	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19196185	2R_19196185_SNP [dm3] 2R_23308662_SNP [dm6]	C	T	1.203e^-5	0.718	UTR_3_PRIME Prosbeta5R1
X	532593	X_532593_SNP [dm3] X_638560_SNP [dm6]	A	T	1.244e^-5	0.718	NON_SYNONYMOUS_CODING su_s_
2R	16396804	2R_16396804_SNP [dm3] 2R_20509299_SNP [dm6]	G	A	1.253e^-5	0.718	UPSTREAM CR44647 DOWNSTREAM CR44646 INTERGENIC	TF binding site mE1_TFBS_sbb
X	9092040	X_9092040_SNP [dm3] X_9198007_SNP [dm6]	C	T	1.312e^-5	0.718	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8543224	2R_8543224_SNP [dm3] 2R_12655719_SNP [dm6]	A	G	1.328e^-5	0.718	UTR_3_PRIME ZnT49B UPSTREAM CG8646
2L	19330069	2L_19330069_SNP [dm3] 2L_19330069_SNP [dm6]	T	A	1.336e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5358880	X_5358880_SNP [dm3] X_5464847_SNP [dm6]	G	A	1.353e^-5	0.718	UTR_5_PRIME SPR INTRON SPR
3R	10124408	3R_10124408_SNP [dm3] 3R_14298686_SNP [dm6]	T	A	1.371e^-5	0.718	UTR_5_PRIME CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9086899	2L_9086899_SNP [dm3] 2L_9086899_SNP [dm6]	T	A	1.486e^-5	0.718	NON_SYNONYMOUS_CODING Toll-4
2R	6275299	2R_6275299_SNP [dm3] 2R_10387794_SNP [dm6]	G	A	1.497e^-5	0.718	INTRON CG42732
2R	6275326	2R_6275326_SNP [dm3] 2R_10387821_SNP [dm6]	A	C	1.501e^-5	0.718	INTRON CG42732
2R	6635857	2R_6635857_SNP [dm3] 2R_10748352_SNP [dm6]	T	C	1.528e^-5	0.718	INTRON CG33144
3L	6176401	3L_6176401_SNP [dm3] 3L_6183301_SNP [dm6]	T	G	1.581e^-5	0.718	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19197016	2R_19197016_SNP [dm3] 2R_23309493_SNP [dm6]	C	T	1.608e^-5	0.718	SYNONYMOUS_CODING Prosbeta5R1	TF binding site mE1_TFBS_cad
X	5358871	X_5358871_SNP [dm3] X_5464838_SNP [dm6]	T	A	1.623e^-5	0.718	UTR_5_PRIME SPR INTRON SPR
X	15405951	X_15405951_INS [dm3] X_15511918_INS [dm6]	C	CTGCAGACCCC...	1.641e^-5	0.718	UTR_3_PRIME Ac13E DOWNSTREAM Gmap
2L	10438508	2L_10438508_SNP [dm3] 2L_10438508_SNP [dm6]	T	A	1.678e^-5	0.718	UPSTREAM CG13142 INTRON CHIP
3R	25063533	3R_25063533_SNP [dm3] 3R_29237811_SNP [dm6]	T	G	1.693e^-5	0.718	SYNONYMOUS_CODING CG11951	TF binding site mE1_TFBS_cad
2R	19197378	2R_19197378_SNP [dm3] 2R_23309855_SNP [dm6]	T	C	1.752e^-5	0.718	UPSTREAM Prosbeta5R1 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4192301	2L_4192301_SNP [dm3] 2L_4192301_SNP [dm6]	G	A	1.775e^-5	0.718	INTRON CG3714
X	606678	X_606678_SNP [dm3] X_712645_SNP [dm6]	T	A	1.789e^-5	0.718	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19196116	2R_19196116_SNP [dm3] 2R_23308593_SNP [dm6]	G	A	1.798e^-5	0.718	DOWNSTREAM Prosbeta5R1 INTERGENIC
2R	18751497	2R_18751497_INS [dm3] 2R_22863974_INS [dm6]	G	GGGAGGG	1.800e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19259009	2L_19259009_SNP [dm3] 2L_19259009_SNP [dm6]	C	A	1.848e^-5	0.72	DOWNSTREAM CG31797 INTERGENIC
X	532587	X_532587_SNP [dm3] X_638554_SNP [dm6]	A	T	1.937e^-5	0.72	NON_SYNONYMOUS_CODING su_s_
2R	15266744	2R_15266744_SNP [dm3] 2R_19379239_SNP [dm6]	C	T	1.943e^-5	0.72	INTRON CG10062
3L	6173940	3L_6173940_SNP [dm3] 3L_6180840_SNP [dm6]	A	G	1.958e^-5	0.72	INTRON CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	518393	X_518393_SNP [dm3] X_624360_SNP [dm6]	C	T	2.090e^-5	0.74	UPSTREAM CR45475 DOWNSTREAM CG13364 INTRON CG13369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17680972	3R_17680972_SNP [dm3] 3R_21855250_SNP [dm6]	G	C	2.182e^-5	0.74	INTRON glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	606174	X_606174_SNP [dm3] X_712141_SNP [dm6]	C	T	2.248e^-5	0.74	INTRON sdk
3L	5329641	3L_5329641_SNP [dm3] 3L_5336541_SNP [dm6]	C	T	2.249e^-5	0.74	INTERGENIC
2L	6238697	2L_6238697_SNP [dm3] 2L_6238697_SNP [dm6]	C	G	2.323e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	2043687	3L_2043687_SNP [dm3] 3L_2043687_SNP [dm6]	T	A	2.361e^-5	0.74	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10188418	3L_10188418_SNP [dm3] 3L_10195318_SNP [dm6]	T	C	2.516e^-5	0.74	INTRON ect
2R	6143749	2R_6143749_SNP [dm3] 2R_10256244_SNP [dm6]	T	A	2.548e^-5	0.74	UPSTREAM CG12911 DOWNSTREAM CG12913 INTERGENIC
2L	20622414	2L_20622414_SNP [dm3] 2L_20622414_SNP [dm6]	T	C	2.571e^-5	0.74	INTRON CR44909
3L	14084349	3L_14084349_SNP [dm3] 3L_14091249_SNP [dm6]	C	T	2.592e^-5	0.74	INTERGENIC
3L	11478397	3L_11478397_SNP [dm3] 3L_11485297_SNP [dm6]	C	A	2.645e^-5	0.74	INTERGENIC
X	3291422	X_3291422_SNP [dm3] X_3397389_SNP [dm6]	T	A	2.678e^-5	0.74	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	512332	X_512332_SNP [dm3] X_618299_SNP [dm6]	T	C	2.727e^-5	0.74	UPSTREAM CG13366 INTRON CG13366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_sens
X	512515	X_512515_SNP [dm3] X_618482_SNP [dm6]	T	C	2.727e^-5	0.74	UPSTREAM CG13366 INTRON CG13366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_sens
X	513696	X_513696_SNP [dm3] X_619663_SNP [dm6]	A	T	2.727e^-5	0.74	UTR_5_PRIME CG13366 UPSTREAM CR45474 INTRON CG13366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	526874	X_526874_SNP [dm3] X_632841_SNP [dm6]	G	C	2.727e^-5	0.74	NON_SYNONYMOUS_CODING l_1_1Bi DOWNSTREAM Dredd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12398077	3L_12398077_SNP [dm3] 3L_12404977_SNP [dm6]	A	G	2.742e^-5	0.74	INTRON CG32103	TF binding site mE1_TFBS_cad
3L	12398090	3L_12398090_SNP [dm3] 3L_12404990_SNP [dm6]	A	G	2.742e^-5	0.74	INTRON CG32103	TF binding site mE1_TFBS_cad
2L	6238718	2L_6238718_SNP [dm3] 2L_6238718_SNP [dm6]	G	A	2.791e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	22083017	3L_22083017_SNP [dm3] 3L_22089917_SNP [dm6]	T	C	2.802e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	497140	X_497140_SNP [dm3] X_603107_SNP [dm6]	C	T	2.924e^-5	0.762	INTRON CG13366	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12390711	3L_12390711_SNP [dm3] 3L_12397611_SNP [dm6]	A	T	3.041e^-5	0.766	NON_SYNONYMOUS_CODING CG32104 DOWNSTREAM Obp69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20992012	2R_20992012_SNP [dm3] 2R_25104489_SNP [dm6]	T	A	3.126e^-5	0.766	INTRON lov
2L	10438553	2L_10438553_INS [dm3] 2L_10438553_INS [dm6]	A	AA	3.153e^-5	0.766	UPSTREAM CG13142 INTRON CHIP
X	602846	X_602846_SNP [dm3] X_708813_SNP [dm6]	G	A	3.162e^-5	0.766	INTRON sdk
3L	10337429	3L_10337429_SNP [dm3] 3L_10344329_SNP [dm6]	C	T	3.195e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10337441	3L_10337441_SNP [dm3] 3L_10344341_SNP [dm6]	A	C	3.247e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3745016	2L_3745016_SNP [dm3] 2L_3745016_SNP [dm6]	T	C	3.254e^-5	0.766	UPSTREAM CG10019 INTRON CG10019
X	583903	X_583903_SNP [dm3] X_689870_SNP [dm6]	T	A	3.267e^-5	0.766	INTRON sdk	TF binding site BDTNP1_TFBS_da
2L	21885277	2L_21885277_SNP [dm3] 2L_21885277_SNP [dm6]	A	T	3.380e^-5	0.779	INTERGENIC
2L	10438565	2L_10438565_SNP [dm3] 2L_10438565_SNP [dm6]	G	A	3.435e^-5	0.779	UPSTREAM CG13142 INTRON CHIP
3L	8268091	3L_8268091_SNP [dm3] 3L_8274991_SNP [dm6]	T	A	3.447e^-5	0.779	INTRON Dscam4
3R	17555183	3R_17555183_SNP [dm3] 3R_21729461_SNP [dm6]	A	T	3.525e^-5	0.785	DOWNSTREAM CR43096 INTERGENIC
X	526352	X_526352_SNP [dm3] X_632319_SNP [dm6]	A	C	3.560e^-5	0.785	NON_SYNONYMOUS_CODING l_1_1Bi
2R	6274755	2R_6274755_SNP [dm3] 2R_10387250_SNP [dm6]	G	C	3.642e^-5	0.794	INTRON CG42732
3L	4147170	3L_4147170_SNP [dm3] 3L_4147170_SNP [dm6]	A	T	3.746e^-5	0.807	INTERGENIC
3R	25693317	3R_25693317_SNP [dm3] 3R_29867595_SNP [dm6]	A	T	3.933e^-5	0.813	UPSTREAM Zip99C INTRON Zip99C	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
X	3291418	X_3291418_SNP [dm3] X_3397385_SNP [dm6]	C	T	3.987e^-5	0.813	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5777220	3R_5777220_SNP [dm3] 3R_9951498_SNP [dm6]	C	A	4.029e^-5	0.813	INTRON Glut4EF
X	575521	X_575521_SNP [dm3] X_681488_SNP [dm6]	G	A	4.068e^-5	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	8211914	X_8211914_SNP [dm3] X_8317881_SNP [dm6]	C	T	4.108e^-5	0.813	INTRON nAChRalpha3
X	596392	X_596392_SNP [dm3] X_702359_SNP [dm6]	G	A	4.142e^-5	0.813	INTRON sdk	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	523668	X_523668_SNP [dm3] X_629635_SNP [dm6]	C	T	4.261e^-5	0.813	UPSTREAM l_1_1Bi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	524131	X_524131_SNP [dm3] X_630098_SNP [dm6]	G	C	4.412e^-5	0.813	NON_SYNONYMOUS_CODING l_1_1Bi UPSTREAM RpL36	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8861719	2R_8861719_SNP [dm3] 2R_12974214_SNP [dm6]	C	A	4.433e^-5	0.813	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8861722	2R_8861722_SNP [dm3] 2R_12974217_SNP [dm6]	A	C	4.433e^-5	0.813	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5329400	3L_5329400_SNP [dm3] 3L_5336300_SNP [dm6]	A	G	4.465e^-5	0.813	INTERGENIC
2R	15266762	2R_15266762_SNP [dm3] 2R_19379257_SNP [dm6]	T	A	4.471e^-5	0.813	SPLICE_SITE_REGION CG10062 INTRON CG10062
X	14089993	X_14089993_SNP [dm3] X_14195960_SNP [dm6]	C	T	4.536e^-5	0.813	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	6143755	2R_6143755_SNP [dm3] 2R_10256250_SNP [dm6]	C	T	4.558e^-5	0.813	UPSTREAM CG12911 DOWNSTREAM CG12913 INTERGENIC
3R	10124319	3R_10124319_SNP [dm3] 3R_14298597_SNP [dm6]	A	T	4.613e^-5	0.813	UTR_5_PRIME CG12207 UPSTREAM CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21894302	X_21894302_SNP [dm3] X_22492466_SNP [dm6]	T	A	4.662e^-5	0.813	INTRON l_1_G0196
2R	17422898	2R_17422898_SNP [dm3] 2R_21535393_SNP [dm6]	G	C	4.668e^-5	0.813	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA
X	500545	X_500545_SNP [dm3] X_606512_SNP [dm6]	G	A	4.669e^-5	0.813	INTRON CG13366	TF binding site mE1_TFBS_sens
X	4364372	X_4364372_SNP [dm3] X_4470339_SNP [dm6]	C	T	4.687e^-5	0.813	INTRON bi & 1 other
2L	3914022	2L_3914022_SNP [dm3] 2L_3914022_SNP [dm6]	T	C	4.687e^-5	0.813	SYNONYMOUS_CODING CG31773 INTRON fred	TF binding site BDTNP1_TFBS_dl
3R	11423240	3R_11423240_SNP [dm3] 3R_15597518_SNP [dm6]	G	T	4.708e^-5	0.813	INTERGENIC
X	589669	X_589669_SNP [dm3] X_695636_SNP [dm6]	A	G	4.759e^-5	0.813	INTRON sdk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25693328	3R_25693328_SNP [dm3] 3R_29867606_SNP [dm6]	A	T	4.818e^-5	0.813	UPSTREAM Zip99C INTRON Zip99C	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2L	19341467	2L_19341467_SNP [dm3] 2L_19341467_SNP [dm6]	C	A	4.829e^-5	0.813	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8268088	3L_8268088_SNP [dm3] 3L_8274988_SNP [dm6]	A	G	4.854e^-5	0.813	INTRON Dscam4
2R	15717745	2R_15717745_SNP [dm3] 2R_19830240_SNP [dm6]	A	G	4.952e^-5	0.813	SYNONYMOUS_CODING Toll-7	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5761165	3R_5761165_SNP [dm3] 3R_9935443_SNP [dm6]	C	A	5.109e^-5	0.813	INTRON Glut4EF
2L	9087288	2L_9087288_SNP [dm3] 2L_9087288_SNP [dm6]	G	T	5.140e^-5	0.813	NON_SYNONYMOUS_CODING Toll-4
2R	19196228	2R_19196228_SNP [dm3] 2R_23308705_SNP [dm6]	C	G	5.174e^-5	0.813	UTR_3_PRIME Prosbeta5R1
3R	14664357	3R_14664357_SNP [dm3] 3R_18838635_SNP [dm6]	T	C	5.207e^-5	0.813	INTRON CG18208
3R	25018695	3R_25018695_SNP [dm3] 3R_29192973_SNP [dm6]	C	A	5.220e^-5	0.813	INTRON CG14509
X	499874	X_499874_SNP [dm3] X_605841_SNP [dm6]	G	A	5.244e^-5	0.813	INTRON CG13366	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15636578	3L_15636578_SNP [dm3] 3L_15643478_SNP [dm6]	T	C	5.273e^-5	0.813	INTRON comm3
2R	20990238	2R_20990238_SNP [dm3] 2R_25102715_SNP [dm6]	T	A	5.281e^-5	0.813	INTRON lov
3L	5246551	3L_5246551_DEL [dm3] 3L_5253451_DEL [dm6]	TGCTA	C	5.309e^-5	0.813	INTRON shep
2L	9087389	2L_9087389_SNP [dm3] 2L_9087389_SNP [dm6]	C	T	5.357e^-5	0.813	SYNONYMOUS_CODING Toll-4
3L	13679945	3L_13679945_SNP [dm3] 3L_13686845_SNP [dm6]	A	G	5.461e^-5	0.813	INTRON bru-3
X	496309	X_496309_SNP [dm3] X_602276_SNP [dm6]	T	C	5.514e^-5	0.813	INTRON CG13366	TF binding site BDTNP1_TFBS_dl
X	529965	X_529965_SNP [dm3] X_635932_SNP [dm6]	A	C	5.514e^-5	0.813	UTR_5_PRIME su_s_ UPSTREAM su_s_ & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	8644406	X_8644406_SNP [dm3] X_8750373_SNP [dm6]	C	T	5.519e^-5	0.813	INTERGENIC
2L	16269678	2L_16269678_SNP [dm3] 2L_16269678_SNP [dm6]	C	A	5.547e^-5	0.813	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	3757091	3L_3757091_SNP [dm3] 3L_3757091_SNP [dm6]	A	G	5.854e^-5	0.846	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	2048994	3L_2048994_SNP [dm3] 3L_2048994_SNP [dm6]	C	T	5.926e^-5	0.846	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
X	522340	X_522340_SNP [dm3] X_628307_SNP [dm6]	C	A	5.928e^-5	0.846	DOWNSTREAM RpL36 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8474535	2L_8474535_SNP [dm3] 2L_8474535_SNP [dm6]	A	G	6.000e^-5	0.846	INTRON d
2R	20990290	2R_20990290_SNP [dm3] 2R_25102767_SNP [dm6]	C	A	6.018e^-5	0.846	INTRON lov
X	515152	X_515152_SNP [dm3] X_621119_SNP [dm6]	C	T	6.089e^-5	0.846	SYNONYMOUS_CODING CG13365 UPSTREAM CG13366 & 1 other DOWNSTREAM CR45474	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	14009658	3R_14009658_SNP [dm3] 3R_18183936_SNP [dm6]	A	G	6.111e^-5	0.846	SYNONYMOUS_CODING CG7208 UPSTREAM cdm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21885645	X_21885645_SNP [dm3] X_22483809_SNP [dm6]	T	C	6.150e^-5	0.846	SYNONYMOUS_CODING Cp110	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19462295	3R_19462295_SNP [dm3] 3R_23636573_SNP [dm6]	G	A	6.195e^-5	0.846	INTRON CG31145
3L	6738662	3L_6738662_SNP [dm3] 3L_6745562_SNP [dm6]	A	T	6.300e^-5	0.846	SYNONYMOUS_CODING velo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2576655	2R_2576655_SNP [dm3] 2R_6689150_SNP [dm6]	T	C	6.485e^-5	0.846	INTRON CG9422 & 1 other
X	578717	X_578717_SNP [dm3] X_684684_SNP [dm6]	A	T	6.494e^-5	0.846	INTERGENIC	transposable element FlyBase
2L	4374566	2L_4374566_SNP [dm3] 2L_4374566_SNP [dm6]	T	G	6.496e^-5	0.846	INTRON Traf4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	611322	X_611322_SNP [dm3] X_717289_SNP [dm6]	G	A	6.512e^-5	0.846	INTRON sdk	TF binding site BDTNP1_TFBS_twi
2R	6734163	2R_6734163_INS [dm3] 2R_10846658_INS [dm6]	T	TT	6.578e^-5	0.846	INTRON CG30015
2R	8548749	2R_8548749_SNP [dm3] 2R_12661244_SNP [dm6]	A	C	6.632e^-5	0.846	INTRON nemy
X	563681	X_563681_SNP [dm3] X_669648_SNP [dm6]	C	T	6.679e^-5	0.846	INTERGENIC
3L	22083037	3L_22083037_SNP [dm3] 3L_22089937_SNP [dm6]	A	G	6.683e^-5	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10142941	3L_10142941_SNP [dm3] 3L_10149841_SNP [dm6]	G	A	6.687e^-5	0.846	INTRON dpr10
3L	8268168	3L_8268168_SNP [dm3] 3L_8275068_SNP [dm6]	C	T	6.727e^-5	0.846	INTRON Dscam4
3L	2060544	3L_2060544_SNP [dm3] 3L_2060544_SNP [dm6]	G	C	6.799e^-5	0.846	NON_SYNONYMOUS_CODING sls INTRON sls
3R	16173792	3R_16173792_SNP [dm3] 3R_20348070_SNP [dm6]	A	G	6.866e^-5	0.846	INTERGENIC
2R	20991928	2R_20991928_SNP [dm3] 2R_25104405_SNP [dm6]	T	C	6.978e^-5	0.846	INTRON lov
3R	25063484	3R_25063484_SNP [dm3] 3R_29237762_SNP [dm6]	A	C	7.014e^-5	0.846	NON_SYNONYMOUS_CODING CG11951	TF binding site mE1_TFBS_cad
2R	20990481	2R_20990481_SNP [dm3] 2R_25102958_SNP [dm6]	C	A	7.071e^-5	0.846	INTRON lov
3L	16623108	3L_16623108_SNP [dm3] 3L_16630008_SNP [dm6]	A	T	7.073e^-5	0.846	INTRON Abl
2R	20991159	2R_20991159_SNP [dm3] 2R_25103636_SNP [dm6]	C	T	7.158e^-5	0.846	INTRON lov
3L	5246514	3L_5246514_SNP [dm3] 3L_5253414_SNP [dm6]	T	C	7.172e^-5	0.846	INTRON shep
2L	19259004	2L_19259004_SNP [dm3] 2L_19259004_SNP [dm6]	T	G	7.194e^-5	0.846	DOWNSTREAM CG31797 INTERGENIC
3L	5246505	3L_5246505_SNP [dm3] 3L_5253405_SNP [dm6]	A	T	7.217e^-5	0.846	INTRON shep
2L	8820270	2L_8820270_SNP [dm3] 2L_8820270_SNP [dm6]	A	T	7.251e^-5	0.846	INTERGENIC
3R	10439451	3R_10439451_SNP [dm3] 3R_14613729_SNP [dm6]	G	A	7.265e^-5	0.846	UPSTREAM CG14853 INTRON CG14853
3R	24701442	3R_24701442_SNP [dm3] 3R_28875720_SNP [dm6]	T	G	7.306e^-5	0.846	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15266716	2R_15266716_SNP [dm3] 2R_19379211_SNP [dm6]	T	G	7.307e^-5	0.846	INTRON CG10062
3L	835171	3L_835171_SNP [dm3] 3L_835171_SNP [dm6]	C	T	7.451e^-5	0.853	SYNONYMOUS_CODING CG42553 UPSTREAM CG42554	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10337290	3L_10337290_SNP [dm3] 3L_10344190_SNP [dm6]	G	C	7.517e^-5	0.853	INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	8268146	3L_8268146_SNP [dm3] 3L_8275046_SNP [dm6]	T	C	7.517e^-5	0.853	INTRON Dscam4
3L	11179684	3L_11179684_SNP [dm3] 3L_11186584_SNP [dm6]	T	G	7.552e^-5	0.853	INTRON GlcAT-P
3L	5246522	3L_5246522_SNP [dm3] 3L_5253422_SNP [dm6]	G	C	7.755e^-5	0.855	INTRON shep
X	10801102	X_10801102_SNP [dm3] X_10907069_SNP [dm6]	A	T	7.774e^-5	0.855	NON_SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20300764	3R_20300764_SNP [dm3] 3R_24475042_SNP [dm6]	G	A	7.794e^-5	0.855	INTERGENIC
3R	25688945	3R_25688945_SNP [dm3] 3R_29863223_SNP [dm6]	A	C	7.834e^-5	0.855	UPSTREAM snoRNA:Me28S-A2564 DOWNSTREAM Zip99C & 1 other INTRON RpS8	TF binding site mE1_TFBS_sens
3L	3757379	3L_3757379_SNP [dm3] 3L_3757379_SNP [dm6]	A	T	8.003e^-5	0.855	INTRON CG32264	TF binding site mE1_TFBS_Kr mE1_TFBS_Trl
2R	1567666	2R_1567666_SNP [dm3] 2R_5680161_SNP [dm6]	A	C	8.015e^-5	0.855	SYNONYMOUS_CODING scaf	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	14666307	3R_14666307_DEL [dm3] 3R_18840585_DEL [dm6]	TT	T	8.078e^-5	0.855	INTRON CG18208
3R	14666310	3R_14666310_SNP [dm3] 3R_18840588_SNP [dm6]	C	G	8.078e^-5	0.855	INTRON CG18208
3R	21736718	3R_21736718_SNP [dm3] 3R_25910996_SNP [dm6]	A	G	8.151e^-5	0.855	INTRON CG42235
2R	8544348	2R_8544348_SNP [dm3] 2R_12656843_SNP [dm6]	C	T	8.158e^-5	0.855	INTRON CG8646
3L	4147188	3L_4147188_SNP [dm3] 3L_4147188_SNP [dm6]	T	G	8.169e^-5	0.855	INTERGENIC
2R	6274627	2R_6274627_SNP [dm3] 2R_10387122_SNP [dm6]	T	C	8.214e^-5	0.855	INTRON CG42732
X	8889850	X_8889850_SNP [dm3] X_8995817_SNP [dm6]	C	T	8.356e^-5	0.855	INTRON rdgA & 1 other
X	575158	X_575158_SNP [dm3] X_681125_SNP [dm6]	A	T	8.469e^-5	0.855	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_eve mE1_TFBS_HSA
2R	1365959	2R_1365959_SNP [dm3] 2R_5478454_SNP [dm6]	C	G	8.485e^-5	0.855	INTRON CG30440
3L	2040738	3L_2040738_DEL [dm3] 3L_2040738_DEL [dm6]	AAGTGTGAATCTA...	A	8.494e^-5	0.855	INTRON sls
X	534779	X_534779_SNP [dm3] X_640746_SNP [dm6]	G	T	8.730e^-5	0.855	NON_SYNONYMOUS_CODING su_s_	TF binding site mE1_TFBS_chinmo
2L	22004857	2L_22004857_SNP [dm3] 2L_22004857_SNP [dm6]	C	T	8.734e^-5	0.855	INTERGENIC	transposable element FlyBase
2R	21011252	2R_21011252_SNP [dm3] 2R_25123729_SNP [dm6]	C	A	8.751e^-5	0.855	INTRON lov
3L	13547419	3L_13547419_SNP [dm3] 3L_13554319_SNP [dm6]	A	G	8.810e^-5	0.855	INTRON bru-3
3L	11039971	3L_11039971_SNP [dm3] 3L_11046871_SNP [dm6]	G	A	8.820e^-5	0.855	UPSTREAM CG43693 INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12642613	3L_12642613_SNP [dm3] 3L_12649513_SNP [dm6]	T	C	8.857e^-5	0.855	EXON CR43431	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8544936	2R_8544936_SNP [dm3] 2R_12657431_SNP [dm6]	C	T	8.936e^-5	0.855	INTRON CG8646
2R	20992889	2R_20992889_SNP [dm3] 2R_25105366_SNP [dm6]	C	T	8.945e^-5	0.855	INTRON lov
3R	12593309	3R_12593309_SNP [dm3] 3R_16767587_SNP [dm6]	G	C	8.958e^-5	0.855	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	8582075	2R_8582075_SNP [dm3] 2R_12694570_SNP [dm6]	T	C	8.976e^-5	0.855	INTERGENIC
2L	8820206	2L_8820206_MNP [dm3] 2L_8820206_MNP [dm6]	AAAA	TTGT	9.009e^-5	0.855	INTERGENIC
3L	8268089	3L_8268089_SNP [dm3] 3L_8274989_SNP [dm6]	C	G	9.015e^-5	0.855	INTRON Dscam4
3R	5781863	3R_5781863_SNP [dm3] 3R_9956141_SNP [dm6]	G	C	9.110e^-5	0.855	UTR_3_PRIME Glut4EF INTRON Glut4EF
3R	14863748	3R_14863748_SNP [dm3] 3R_19038026_SNP [dm6]	G	A	9.111e^-5	0.855	INTRON CG6026
3L	2040786	3L_2040786_SNP [dm3] 3L_2040786_SNP [dm6]	T	A	9.176e^-5	0.855	SYNONYMOUS_CODING sls
2R	9165305	2R_9165305_SNP [dm3] 2R_13277800_SNP [dm6]	G	C	9.276e^-5	0.855	INTRON Dh31-R
X	553465	X_553465_SNP [dm3] X_659432_SNP [dm6]	G	A	9.280e^-5	0.855	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15534742	2R_15534742_SNP [dm3] 2R_19647237_SNP [dm6]	C	G	9.332e^-5	0.855	NON_SYNONYMOUS_CODING CG15905	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	8262466	X_8262466_SNP [dm3] X_8368433_SNP [dm6]	C	A	9.376e^-5	0.855	INTERGENIC
3L	10337228	3L_10337228_SNP [dm3] 3L_10344128_SNP [dm6]	C	T	9.412e^-5	0.855	INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	8268127	3L_8268127_INS [dm3] 3L_8275027_INS [dm6]	T	TAACATTT	9.427e^-5	0.855	INTRON Dscam4
2R	7210941	2R_7210941_SNP [dm3] 2R_11323436_SNP [dm6]	G	T	9.491e^-5	0.855	UPSTREAM sha INTERGENIC
X	2801976	X_2801976_SNP [dm3] X_2907943_SNP [dm6]	A	G	9.496e^-5	0.855	INTRON kirre
3L	6173428	3L_6173428_SNP [dm3] 3L_6180328_SNP [dm6]	A	G	9.497e^-5	0.855	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
2R	21002071	2R_21002071_SNP [dm3] 2R_25114548_SNP [dm6]	C	A	9.509e^-5	0.855	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	6320296	3R_6320296_SNP [dm3] 3R_10494574_SNP [dm6]	G	A	9.541e^-5	0.855	INTERGENIC
2R	17029948	2R_17029948_INS [dm3] 2R_21142443_INS [dm6]	T	TAACATAGTTTAAAAAAT...	9.637e^-5	0.855	UTR_5_PRIME CG9406 UPSTREAM Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_sens
3L	2043216	3L_2043216_SNP [dm3] 3L_2043216_SNP [dm6]	T	C	9.750e^-5	0.855	INTRON sls	TF binding site mE1_TFBS_cad
2L	19341309	2L_19341309_SNP [dm3] 2L_19341309_SNP [dm6]	C	A	9.786e^-5	0.855	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12447313	X_12447313_SNP [dm3] X_12553280_SNP [dm6]	A	G	9.804e^-5	0.855	SYNONYMOUS_CODING Cpr11B INTRON CG43921
3L	6007659	3L_6007659_SNP [dm3] 3L_6014559_SNP [dm6]	T	C	9.822e^-5	0.855	INTRON PVRAP
2L	9167722	2L_9167722_SNP [dm3] 2L_9167722_SNP [dm6]	T	A	9.850e^-5	0.855	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18253104	3R_18253104_SNP [dm3] 3R_22427382_SNP [dm6]	C	T	9.859e^-5	0.855	SYNONYMOUS_CODING CG13847	TF binding site mE1_TFBS_chinmo
2L	20850204	2L_20850204_SNP [dm3] 2L_20850204_SNP [dm6]	C	A	9.906e^-5	0.855	SYNONYMOUS_CODING CG14402
2R	20987347	2R_20987347_DEL [dm3] 2R_25099824_DEL [dm6]	GCA	G	1.007e^-4	0.855	UPSTREAM lov INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8889845	X_8889845_SNP [dm3] X_8995812_SNP [dm6]	A	G	1.010e^-4	0.855	INTRON rdgA & 1 other
2L	7475641	2L_7475641_SNP [dm3] 2L_7475641_SNP [dm6]	C	T	1.015e^-4	0.855	SYNONYMOUS_CODING CG6441 INTRON Ziz
3R	18082056	3R_18082056_SNP [dm3] 3R_22256334_SNP [dm6]	T	A	1.017e^-4	0.855	INTRON SKIP
2L	5764111	2L_5764111_SNP [dm3] 2L_5764111_SNP [dm6]	A	G	1.025e^-4	0.855	SYNONYMOUS_CODING obst-E INTRON obst-E	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24702151	3R_24702151_SNP [dm3] 3R_28876429_SNP [dm6]	T	C	1.030e^-4	0.855	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	542844	X_542844_SNP [dm3] X_648811_SNP [dm6]	G	T	1.030e^-4	0.855	UTR_3_PRIME Hmt4-20 DOWNSTREAM Hmt4-20 & 1 other
X	543838	X_543838_SNP [dm3] X_649805_SNP [dm6]	C	T	1.030e^-4	0.855	UTR_3_PRIME Hmt4-20	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	550323	X_550323_SNP [dm3] X_656290_SNP [dm6]	C	T	1.030e^-4	0.855	START_GAINED skpA UTR_5_PRIME skpA UPSTREAM skpA & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	25693270	3R_25693270_SNP [dm3] 3R_29867548_SNP [dm6]	G	A	1.035e^-4	0.855	UPSTREAM Zip99C INTRON Zip99C	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
3L	10337297	3L_10337297_SNP [dm3] 3L_10344197_SNP [dm6]	A	C	1.041e^-4	0.855	INTERGENIC	TF binding site mE1_TFBS_Ubx
3L	8268086	3L_8268086_SNP [dm3] 3L_8274986_SNP [dm6]	T	A	1.044e^-4	0.855	INTRON Dscam4
3L	8268151	3L_8268151_INS [dm3] 3L_8275051_INS [dm6]	T	TTAAA	1.048e^-4	0.855	INTRON Dscam4
2R	8544935	2R_8544935_SNP [dm3] 2R_12657430_SNP [dm6]	T	A	1.049e^-4	0.855	INTRON CG8646
2R	16574632	2R_16574632_SNP [dm3] 2R_20687127_SNP [dm6]	T	G	1.054e^-4	0.855	UPSTREAM Gr57a INTERGENIC
X	8889892	X_8889892_SNP [dm3] X_8995859_SNP [dm6]	T	G	1.058e^-4	0.855	INTRON rdgA & 1 other	insulator Insulator_Class_II.mE01
2L	8791191	2L_8791191_SNP [dm3] 2L_8791191_SNP [dm6]	A	T	1.084e^-4	0.87	INTERGENIC
X	568531	X_568531_SNP [dm3] X_674498_SNP [dm6]	T	G	1.095e^-4	0.87	INTERGENIC
2R	21001072	2R_21001072_SNP [dm3] 2R_25113549_SNP [dm6]	G	T	1.096e^-4	0.87	INTRON lov	TF binding site BDTNP1_TFBS_z
3L	1660485	3L_1660485_SNP [dm3] 3L_1660485_SNP [dm6]	T	G	1.096e^-4	0.87	DOWNSTREAM CG7971 INTRON CG7971	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4454897	2L_4454897_SNP [dm3] 2L_4454897_SNP [dm6]	G	A	1.101e^-4	0.87	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8820213	2L_8820213_INS [dm3] 2L_8820213_INS [dm6]	T	TCTTTTTTTGTATCTTT...	1.107e^-4	0.87	INTERGENIC
3L	14994576	3L_14994576_SNP [dm3] 3L_15001476_SNP [dm6]	G	C	1.108e^-4	0.87	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
3L	11146704	3L_11146704_SNP [dm3] 3L_11153604_SNP [dm6]	C	T	1.120e^-4	0.871	INTRON CG32082
X	606588	X_606588_SNP [dm3] X_712555_SNP [dm6]	G	T	1.130e^-4	0.871	INTRON sdk	TF binding site mE1_TFBS_HSA
3L	8838459	3L_8838459_SNP [dm3] 3L_8845359_SNP [dm6]	T	C	1.131e^-4	0.871	INTRON dally
X	8889820	X_8889820_SNP [dm3] X_8995787_SNP [dm6]	A	T	1.132e^-4	0.871	INTRON rdgA & 1 other
2R	16617227	2R_16617227_SNP [dm3] 2R_20729722_SNP [dm6]	A	T	1.133e^-4	0.871	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_twi
3R	22496760	3R_22496760_SNP [dm3] 3R_26671038_SNP [dm6]	G	T	1.164e^-4	0.878	INTRON beat-VII	TF binding site BDTNP1_TFBS_twi
2R	8545908	2R_8545908_SNP [dm3] 2R_12658403_SNP [dm6]	C	T	1.166e^-4	0.878	SYNONYMOUS_CODING CG8646	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10282300	2L_10282300_SNP [dm3] 2L_10282300_SNP [dm6]	T	G	1.169e^-4	0.878	INTRON CG5604
3L	17449235	3L_17449235_SNP [dm3] 3L_17456135_SNP [dm6]	A	T	1.189e^-4	0.878	UTR_3_PRIME CG18265 DOWNSTREAM CG18265
2R	1365937	2R_1365937_SNP [dm3] 2R_5478432_SNP [dm6]	A	T	1.192e^-4	0.878	INTRON CG30440
3R	17555214	3R_17555214_SNP [dm3] 3R_21729492_SNP [dm6]	A	T	1.195e^-4	0.878	DOWNSTREAM CR43096 INTERGENIC
3L	12624528	3L_12624528_SNP [dm3] 3L_12631428_SNP [dm6]	C	G	1.206e^-4	0.878	INTRON CR32111
3R	21744717	3R_21744717_SNP [dm3] 3R_25918995_SNP [dm6]	T	G	1.207e^-4	0.878	UTR_3_PRIME CG42235 INTRON CG42235
3L	6007152	3L_6007152_SNP [dm3] 3L_6014052_SNP [dm6]	G	A	1.208e^-4	0.878	INTRON PVRAP
2L	8820223	2L_8820223_SNP [dm3] 2L_8820223_SNP [dm6]	G	C	1.215e^-4	0.878	INTERGENIC
2L	7984302	2L_7984302_SNP [dm3] 2L_7984302_SNP [dm6]	G	A	1.218e^-4	0.878	UPSTREAM Snoo & 1 other INTRON CG7231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4965481	X_4965481_SNP [dm3] X_5071448_SNP [dm6]	T	C	1.219e^-4	0.878	UTR_3_PRIME CG32767 DOWNSTREAM ovo
X	611680	X_611680_SNP [dm3] X_717647_SNP [dm6]	A	C	1.221e^-4	0.878	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14664330	3R_14664330_SNP [dm3] 3R_18838608_SNP [dm6]	G	A	1.226e^-4	0.878	INTRON CG18208
3L	8268158	3L_8268158_INS [dm3] 3L_8275058_INS [dm6]	T	TGAATTAGG	1.226e^-4	0.878	INTRON Dscam4
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	1.227e^-4	0.878	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
2L	8820211	2L_8820211_SNP [dm3] 2L_8820211_SNP [dm6]	G	T	1.227e^-4	0.878	INTERGENIC
2L	7092895	2L_7092895_DEL [dm3] 2L_7092895_DEL [dm6]	TT	T	1.228e^-4	0.878	INTERGENIC
2R	21002547	2R_21002547_SNP [dm3] 2R_25115024_SNP [dm6]	T	G	1.232e^-4	0.878	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	17392698	X_17392698_SNP [dm3] X_17498665_SNP [dm6]	A	T	1.245e^-4	0.879	INTRON CG43658
3L	10337289	3L_10337289_SNP [dm3] 3L_10344189_SNP [dm6]	G	T	1.245e^-4	0.879	INTERGENIC	TF binding site mE1_TFBS_Ubx
X	610887	X_610887_DEL [dm3] X_716854_DEL [dm6]	CATTTGTCGCACTCCAAA...	C	1.250e^-4	0.879	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6438417	2R_6438417_SNP [dm3] 2R_10550912_SNP [dm6]	A	C	1.255e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4347455	X_4347455_INS [dm3] X_4453422_INS [dm6]	T	TCATTTCAT	1.270e^-4	0.879	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17709143	2R_17709143_SNP [dm3] 2R_21821638_SNP [dm6]	C	A	1.281e^-4	0.879	NON_SYNONYMOUS_CODING CG13492	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10128554	3L_10128554_SNP [dm3] 3L_10135454_SNP [dm6]	G	A	1.282e^-4	0.879	INTRON dpr6	TF binding site mE1_TFBS_chinmo
3L	12857156	3L_12857156_SNP [dm3] 3L_12864056_SNP [dm6]	A	T	1.286e^-4	0.879	INTERGENIC
3L	8268153	3L_8268153_SNP [dm3] 3L_8275053_SNP [dm6]	T	A	1.289e^-4	0.879	INTRON Dscam4
3L	18944804	3L_18944804_DEL [dm3] 3L_18951704_DEL [dm6]	GAAA	G	1.294e^-4	0.879	INTRON CG6836
3R	21734831	3R_21734831_SNP [dm3] 3R_25909109_SNP [dm6]	A	G	1.296e^-4	0.879	INTRON CG42235
3L	8268147	3L_8268147_SNP [dm3] 3L_8275047_SNP [dm6]	A	T	1.304e^-4	0.879	INTRON Dscam4
2R	18394037	2R_18394037_SNP [dm3] 2R_22506532_SNP [dm6]	C	A	1.305e^-4	0.879	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6007709	3L_6007709_SNP [dm3] 3L_6014609_SNP [dm6]	T	C	1.323e^-4	0.879	INTRON PVRAP
3R	7811015	3R_7811015_SNP [dm3] 3R_11985293_SNP [dm6]	T	C	1.328e^-4	0.879	SYNONYMOUS_CODING mfas UPSTREAM CG3397	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	597389	X_597389_SNP [dm3] X_703356_SNP [dm6]	C	G	1.330e^-4	0.879	INTRON sdk
3L	644854	3L_644854_SNP [dm3] 3L_644854_SNP [dm6]	G	T	1.330e^-4	0.879	DOWNSTREAM CR43334 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	21010467	2R_21010467_INS [dm3] 2R_25122944_INS [dm6]	A	AATT	1.337e^-4	0.879	INTRON lov
2L	15771589	2L_15771589_SNP [dm3] 2L_15771589_SNP [dm6]	C	T	1.343e^-4	0.879	SYNONYMOUS_CODING CG31826 UPSTREAM Ku80
2R	1045342	2R_1045342_SNP [dm3] 2R_5157837_SNP [dm6]	A	T	1.348e^-4	0.879	INTERGENIC	transposable element FlyBase
2R	20995312	2R_20995312_SNP [dm3] 2R_25107789_SNP [dm6]	G	A	1.348e^-4	0.879	INTRON lov	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8941794	2R_8941794_SNP [dm3] 2R_13054289_SNP [dm6]	T	C	1.348e^-4	0.879	DOWNSTREAM Drl-2 INTERGENIC
X	8172657	X_8172657_SNP [dm3] X_8278624_SNP [dm6]	A	G	1.351e^-4	0.879	UTR_3_PRIME nAChRalpha3
3R	19831866	3R_19831866_SNP [dm3] 3R_24006144_SNP [dm6]	C	G	1.353e^-4	0.879	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl
3R	24701248	3R_24701248_SNP [dm3] 3R_28875526_SNP [dm6]	C	G	1.354e^-4	0.879	UPSTREAM CG14528 DOWNSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad
X	2805042	X_2805042_SNP [dm3] X_2911009_SNP [dm6]	C	A	1.364e^-4	0.879	INTRON kirre
3R	26573013	3R_26573013_SNP [dm3] 3R_30747291_SNP [dm6]	G	A	1.372e^-4	0.879	UPSTREAM CR43238 INTERGENIC
3R	14008422	3R_14008422_SNP [dm3] 3R_18182700_SNP [dm6]	A	G	1.378e^-4	0.879	SYNONYMOUS_CODING cdm DOWNSTREAM CG7208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13644278	3R_13644278_DEL [dm3] 3R_17818556_DEL [dm6]	CTC	C	1.379e^-4	0.879	INTRON tinc
2R	17423116	2R_17423116_SNP [dm3] 2R_21535611_SNP [dm6]	T	A	1.380e^-4	0.879	DOWNSTREAM CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8447135	2L_8447135_SNP [dm3] 2L_8447135_SNP [dm6]	A	G	1.381e^-4	0.879	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	597512	X_597512_SNP [dm3] X_703479_SNP [dm6]	T	C	1.384e^-4	0.879	INTRON sdk
2R	21004197	2R_21004197_SNP [dm3] 2R_25116674_SNP [dm6]	G	A	1.407e^-4	0.879	INTRON lov
3L	13300499	3L_13300499_SNP [dm3] 3L_13307399_SNP [dm6]	C	T	1.410e^-4	0.879	INTERGENIC
3R	10079874	3R_10079874_INS [dm3] 3R_14254152_INS [dm6]	C	CT	1.413e^-4	0.879	INTRON Aats-met
3L	5246690	3L_5246690_SNP [dm3] 3L_5253590_SNP [dm6]	A	C	1.430e^-4	0.879	INTRON shep
3L	5246691	3L_5246691_SNP [dm3] 3L_5253591_SNP [dm6]	T	A	1.430e^-4	0.879	INTRON shep
2R	8613306	2R_8613306_SNP [dm3] 2R_12725801_SNP [dm6]	C	T	1.438e^-4	0.879	INTRON CG42663
2L	19560569	2L_19560569_SNP [dm3] 2L_19560569_SNP [dm6]	G	A	1.438e^-4	0.879	NON_SYNONYMOUS_CODING Tep5
3L	11523839	3L_11523839_SNP [dm3] 3L_11530739_SNP [dm6]	T	C	1.447e^-4	0.879	INTRON Mob2
2R	6212020	2R_6212020_SNP [dm3] 2R_10324515_SNP [dm6]	T	G	1.449e^-4	0.879	INTRON CG42732	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5500909	2L_5500909_SNP [dm3] 2L_5500909_SNP [dm6]	A	T	1.464e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3761313	3L_3761313_SNP [dm3] 3L_3761313_SNP [dm6]	G	T	1.465e^-4	0.879	INTRON CG32264
3L	13300473	3L_13300473_SNP [dm3] 3L_13307373_SNP [dm6]	A	C	1.468e^-4	0.879	INTERGENIC
X	8634974	X_8634974_SNP [dm3] X_8740941_SNP [dm6]	C	A	1.468e^-4	0.879	INTERGENIC
2L	8816926	2L_8816926_SNP [dm3] 2L_8816926_SNP [dm6]	G	A	1.473e^-4	0.879	INTERGENIC
X	8889952	X_8889952_SNP [dm3] X_8995919_SNP [dm6]	T	C	1.476e^-4	0.879	INTRON rdgA & 1 other
3R	19710692	3R_19710692_SNP [dm3] 3R_23884970_SNP [dm6]	A	G	1.482e^-4	0.879	INTRON Pli
3L	18944792	3L_18944792_SNP [dm3] 3L_18951692_SNP [dm6]	A	T	1.487e^-4	0.879	INTRON CG6836
X	20235381	X_20235381_SNP [dm3] X_20364354_SNP [dm6]	G	A	1.489e^-4	0.879	INTERGENIC
3L	7396508	3L_7396508_SNP [dm3] 3L_7403408_SNP [dm6]	A	T	1.491e^-4	0.879	SYNONYMOUS_CODING CG8560
3R	25019008	3R_25019008_SNP [dm3] 3R_29193286_SNP [dm6]	T	C	1.496e^-4	0.879	INTRON CG14509
X	19516811	X_19516811_SNP [dm3] X_19622778_SNP [dm6]	C	T	1.498e^-4	0.879	SYNONYMOUS_CODING NAA20 UPSTREAM MKP-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3290959	3L_3290959_SNP [dm3] 3L_3290959_SNP [dm6]	G	A	1.499e^-4	0.879	UPSTREAM CG12009 DOWNSTREAM CG12017 INTERGENIC
2R	8544927	2R_8544927_SNP [dm3] 2R_12657422_SNP [dm6]	A	C	1.499e^-4	0.879	INTRON CG8646
2R	19400339	2R_19400339_SNP [dm3] 2R_23512816_SNP [dm6]	G	T	1.500e^-4	0.879	UPSTREAM CG3906 INTERGENIC
3R	24807487	3R_24807487_SNP [dm3] 3R_28981765_SNP [dm6]	T	G	1.501e^-4	0.879	INTERGENIC
2R	19187725	2R_19187725_SNP [dm3] 2R_23300202_SNP [dm6]	G	A	1.519e^-4	0.883	INTERGENIC
2R	8544938	2R_8544938_SNP [dm3] 2R_12657433_SNP [dm6]	A	T	1.520e^-4	0.883	INTRON CG8646
2L	15771534	2L_15771534_SNP [dm3] 2L_15771534_SNP [dm6]	C	A	1.527e^-4	0.883	UPSTREAM Ku80 INTRON CG31826	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	22013600	2L_22013600_SNP [dm3] 2L_22013600_SNP [dm6]	C	A	1.530e^-4	0.883	INTERGENIC
X	13728406	X_13728406_SNP [dm3] X_13834373_SNP [dm6]	G	A	1.530e^-4	0.883	UTR_3_PRIME AMPdeam INTRON AMPdeam	TF binding site BDTNP1_TFBS_dl
X	18391593	X_18391593_SNP [dm3] X_18497560_SNP [dm6]	T	C	1.547e^-4	0.89	INTRON GalNAc-T2	TF binding site mE1_TFBS_cad
2L	21966934	2L_21966934_SNP [dm3] 2L_21966934_SNP [dm6]	A	G	1.560e^-4	0.894	INTERGENIC
3R	10124387	3R_10124387_SNP [dm3] 3R_14298665_SNP [dm6]	T	C	1.565e^-4	0.894	UTR_5_PRIME CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20804810	2L_20804810_SNP [dm3] 2L_20804810_SNP [dm6]	T	A	1.569e^-4	0.894	INTRON CG9328
2R	6211611	2R_6211611_SNP [dm3] 2R_10324106_SNP [dm6]	A	T	1.600e^-4	0.897	INTRON CG42732
3L	4268579	3L_4268579_SNP [dm3] 3L_4268579_SNP [dm6]	A	T	1.606e^-4	0.897	INTRON CG1273
X	5327236	X_5327236_SNP [dm3] X_5433203_SNP [dm6]	A	C	1.609e^-4	0.897	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15162146	2R_15162146_SNP [dm3] 2R_19274641_SNP [dm6]	A	G	1.612e^-4	0.897	INTRON rib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Ubx
3L	2042809	3L_2042809_SNP [dm3] 3L_2042809_SNP [dm6]	T	G	1.613e^-4	0.897	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
2R	21000868	2R_21000868_SNP [dm3] 2R_25113345_SNP [dm6]	G	A	1.620e^-4	0.897	INTRON lov	TF binding site BDTNP1_TFBS_z
3L	7726547	3L_7726547_SNP [dm3] 3L_7733447_SNP [dm6]	A	T	1.620e^-4	0.897	UTR_3_PRIME Snmp2 INTRON CG32373
X	12447973	X_12447973_SNP [dm3] X_12553940_SNP [dm6]	T	A	1.633e^-4	0.897	INTRON CG43921 & 1 other
2L	10997925	2L_10997925_DEL [dm3] 2L_10997925_DEL [dm6]	CAT	C	1.646e^-4	0.897	UTR_3_PRIME aub DOWNSTREAM CG16833	TF binding site mE1_TFBS_cad
2L	9891531	2L_9891531_SNP [dm3] 2L_9891531_SNP [dm6]	C	A	1.647e^-4	0.897	NON_SYNONYMOUS_CODING mtDNA-helicase UPSTREAM CG34183 DOWNSTREAM CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15001088	3R_15001088_DEL [dm3] 3R_19175366_DEL [dm6]	CACGC	TT	1.648e^-4	0.897	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	10128545	3L_10128545_SNP [dm3] 3L_10135445_SNP [dm6]	T	A	1.649e^-4	0.897	INTRON dpr6
3R	5422057	3R_5422057_SNP [dm3] 3R_9596335_SNP [dm6]	G	A	1.658e^-4	0.897	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7997812	3L_7997812_SNP [dm3] 3L_8004712_SNP [dm6]	A	T	1.658e^-4	0.897	INTRON nmo
3L	2400403	3L_2400403_SNP [dm3] 3L_2400403_SNP [dm6]	G	C	1.675e^-4	0.897	UPSTREAM CG45186 INTRON CG45186
2L	22014838	2L_22014838_SNP [dm3] 2L_22014838_SNP [dm6]	A	G	1.682e^-4	0.897	UPSTREAM CG31693 INTERGENIC	transposable element FlyBase
X	20235366	X_20235366_SNP [dm3] X_20364339_SNP [dm6]	G	A	1.693e^-4	0.897	INTERGENIC
3R	24839857	3R_24839857_SNP [dm3] 3R_29014135_SNP [dm6]	G	A	1.693e^-4	0.897	INTRON wat
2L	20849943	2L_20849943_SNP [dm3] 2L_20849943_SNP [dm6]	C	T	1.694e^-4	0.897	SYNONYMOUS_CODING CG14402 DOWNSTREAM CG31676
2R	19025511	2R_19025511_SNP [dm3] 2R_23137988_SNP [dm6]	G	A	1.698e^-4	0.897	UPSTREAM CG30192 INTERGENIC
2R	17029257	2R_17029257_SNP [dm3] 2R_21141752_SNP [dm6]	A	G	1.698e^-4	0.897	UTR_5_PRIME Magi UPSTREAM CG9406	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	6211626	2R_6211626_SNP [dm3] 2R_10324121_SNP [dm6]	A	G	1.701e^-4	0.897	INTRON CG42732
3L	4373356	3L_4373356_SNP [dm3] 3L_4373356_SNP [dm6]	C	A	1.704e^-4	0.897	INTRON DopEcR	TF binding site mE1_TFBS_cad
3R	10838880	3R_10838880_SNP [dm3] 3R_15013158_SNP [dm6]	C	T	1.709e^-4	0.897	INTERGENIC
X	18204072	X_18204072_SNP [dm3] X_18310039_SNP [dm6]	G	A	1.710e^-4	0.897	UPSTREAM os DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	10124353	3R_10124353_SNP [dm3] 3R_14298631_SNP [dm6]	T	C	1.713e^-4	0.897	START_GAINED CG12207 UTR_5_PRIME CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13145712	2L_13145712_INS [dm3] 2L_13145712_INS [dm6]	A	AA	1.713e^-4	0.897	UPSTREAM CR44199 INTERGENIC	TF binding site mE1_TFBS_inv
2L	8772241	2L_8772241_SNP [dm3] 2L_8772241_SNP [dm6]	C	G	1.717e^-4	0.897	DOWNSTREAM CG9466 INTRON CG9465
X	8172656	X_8172656_SNP [dm3] X_8278623_SNP [dm6]	A	C	1.731e^-4	0.897	UTR_3_PRIME nAChRalpha3
X	579836	X_579836_DEL [dm3] X_685803_DEL [dm6]	GGCGCGACAACAAT...	A	1.741e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	823983	3L_823983_SNP [dm3] 3L_823983_SNP [dm6]	A	C	1.744e^-4	0.897	INTERGENIC
2L	9167652	2L_9167652_SNP [dm3] 2L_9167652_SNP [dm6]	T	A	1.747e^-4	0.897	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16144412	X_16144412_SNP [dm3] X_16250379_SNP [dm6]	A	G	1.751e^-4	0.897	INTERGENIC
3L	3638579	3L_3638579_INS [dm3] 3L_3638579_INS [dm6]	A	AA	1.754e^-4	0.897	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	15870827	X_15870827_SNP [dm3] X_15976794_SNP [dm6]	G	A	1.769e^-4	0.897	UPSTREAM CG42766 DOWNSTREAM Or13a INTERGENIC
2R	16031076	2R_16031076_SNP [dm3] 2R_20143571_SNP [dm6]	G	T	1.783e^-4	0.897	INTERGENIC
2R	9165300	2R_9165300_SNP [dm3] 2R_13277795_SNP [dm6]	A	G	1.783e^-4	0.897	INTRON Dh31-R
3L	21151836	3L_21151836_SNP [dm3] 3L_21158736_SNP [dm6]	A	T	1.801e^-4	0.897	INTRON Ac78C	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	21981657	X_21981657_SNP [dm3] X_22579821_SNP [dm6]	C	A	1.805e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	549910	X_549910_SNP [dm3] X_655877_SNP [dm6]	C	T	1.817e^-4	0.897	UTR_5_PRIME Hmt4-20 UPSTREAM Hmt4-20 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17164245	2R_17164245_SNP [dm3] 2R_21276740_SNP [dm6]	C	T	1.824e^-4	0.897	INTRON Rgk3
2L	4598376	2L_4598376_SNP [dm3] 2L_4598376_SNP [dm6]	T	A	1.824e^-4	0.897	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	5135097	2R_5135097_SNP [dm3] 2R_9247592_SNP [dm6]	A	T	1.825e^-4	0.897	UPSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8162796	X_8162796_SNP [dm3] X_8268763_SNP [dm6]	C	T	1.835e^-4	0.897	INTRON CG1632	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1365983	2R_1365983_SNP [dm3] 2R_5478478_SNP [dm6]	T	G	1.837e^-4	0.897	INTRON CG30440
2L	16914045	2L_16914045_SNP [dm3] 2L_16914045_SNP [dm6]	A	G	1.840e^-4	0.897	NON_SYNONYMOUS_CODING tweek
3R	9443570	3R_9443570_SNP [dm3] 3R_13617848_SNP [dm6]	T	C	1.840e^-4	0.897	EXON CR45680
3R	10423360	3R_10423360_SNP [dm3] 3R_14597638_SNP [dm6]	C	G	1.842e^-4	0.897	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12857133	3L_12857133_SNP [dm3] 3L_12864033_SNP [dm6]	G	T	1.846e^-4	0.897	INTERGENIC
3R	9963796	3R_9963796_SNP [dm3] 3R_14138074_SNP [dm6]	G	C	1.847e^-4	0.897	INTERGENIC
2R	5135090	2R_5135090_SNP [dm3] 2R_9247585_SNP [dm6]	C	A	1.851e^-4	0.897	UPSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14227266	2L_14227266_SNP [dm3] 2L_14227266_SNP [dm6]	T	C	1.866e^-4	0.897	INTRON Dyrk2
X	12162015	X_12162015_SNP [dm3] X_12267982_SNP [dm6]	A	T	1.869e^-4	0.897	INTRON Ten-a
2R	19398361	2R_19398361_SNP [dm3] 2R_23510838_SNP [dm6]	A	T	1.871e^-4	0.897	DOWNSTREAM CG3906 INTERGENIC	TF binding site mE1_TFBS_cad
2R	21133396	2R_21133396_SNP [dm3] 2R_25245873_SNP [dm6]	G	A	1.872e^-4	0.897	UPSTREAM CG30429 INTRON CG9380
2L	15399080	2L_15399080_SNP [dm3] 2L_15399080_SNP [dm6]	T	C	1.878e^-4	0.897	UPSTREAM CR45373 DOWNSTREAM CR44860 INTERGENIC
3R	5758787	3R_5758787_SNP [dm3] 3R_9933065_SNP [dm6]	G	T	1.882e^-4	0.897	INTRON Glut4EF	TF binding site mE1_TFBS_HSA
3R	9860652	3R_9860652_SNP [dm3] 3R_14034930_SNP [dm6]	C	G	1.891e^-4	0.897	UTR_3_PRIME CG3061 DOWNSTREAM CG9922
3L	1294411	3L_1294411_SNP [dm3] 3L_1294411_SNP [dm6]	T	A	1.892e^-4	0.897	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
X	2790910	X_2790910_SNP [dm3] X_2896877_SNP [dm6]	T	C	1.893e^-4	0.897	INTRON kirre
2L	8820263	2L_8820263_SNP [dm3] 2L_8820263_SNP [dm6]	G	T	1.896e^-4	0.897	INTERGENIC
3R	21738621	3R_21738621_SNP [dm3] 3R_25912899_SNP [dm6]	T	A	1.904e^-4	0.897	UTR_3_PRIME CG42235 INTRON CG42235
2R	20989731	2R_20989731_SNP [dm3] 2R_25102208_SNP [dm6]	G	T	1.905e^-4	0.897	INTRON lov	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12593265	3R_12593265_SNP [dm3] 3R_16767543_SNP [dm6]	C	G	1.909e^-4	0.897	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	12593255	3R_12593255_SNP [dm3] 3R_16767533_SNP [dm6]	G	A	1.910e^-4	0.897	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	6121178	2L_6121178_SNP [dm3] 2L_6121178_SNP [dm6]	G	A	1.914e^-4	0.897	NON_SYNONYMOUS_CODING stai DOWNSTREAM CG31642 INTRON stai	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8883344	2L_8883344_SNP [dm3] 2L_8883344_SNP [dm6]	C	T	1.914e^-4	0.897	INTERGENIC
2R	8897556	2R_8897556_INS [dm3] 2R_13010051_INS [dm6]	A	AACGGTTG	1.919e^-4	0.897	INTERGENIC
3R	14093343	3R_14093343_SNP [dm3] 3R_18267621_SNP [dm6]	A	C	1.943e^-4	0.897	UPSTREAM CG18599 INTERGENIC
2R	20990714	2R_20990714_SNP [dm3] 2R_25103191_SNP [dm6]	G	A	1.946e^-4	0.897	INTRON lov
X	8431366	X_8431366_SNP [dm3] X_8537333_SNP [dm6]	G	A	1.947e^-4	0.897	INTRON Nrg
3L	8268162	3L_8268162_SNP [dm3] 3L_8275062_SNP [dm6]	C	T	1.949e^-4	0.897	INTRON Dscam4
2R	4984148	2R_4984148_SNP [dm3] 2R_9096643_SNP [dm6]	T	A	1.949e^-4	0.897	UPSTREAM snoRNA:Me28S-G3255b & 1 other DOWNSTREAM snoRNA:Or-aca5 & 4 others INTRON Uhg4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
X	15455681	X_15455681_SNP [dm3] X_15561648_SNP [dm6]	A	C	1.949e^-4	0.897	INTERGENIC
3R	26401055	3R_26401055_SNP [dm3] 3R_30575333_SNP [dm6]	A	T	1.952e^-4	0.897	UTR_3_PRIME tmod INTRON tmod
2R	21131241	2R_21131241_SNP [dm3] 2R_25243718_SNP [dm6]	G	A	1.954e^-4	0.897	START_GAINED CG9380 UTR_5_PRIME CG9380	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	10438465	2L_10438465_SNP [dm3] 2L_10438465_SNP [dm6]	T	C	1.955e^-4	0.897	UPSTREAM CG13142 INTRON CHIP
3R	15843303	3R_15843303_SNP [dm3] 3R_20017581_SNP [dm6]	G	A	1.968e^-4	0.897	NON_SYNONYMOUS_CODING CG4836 UTR_3_PRIME CG4836 DOWNSTREAM CG4433	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6211592	2R_6211592_SNP [dm3] 2R_10324087_SNP [dm6]	T	G	1.968e^-4	0.897	INTRON CG42732
2R	6211597	2R_6211597_SNP [dm3] 2R_10324092_SNP [dm6]	G	A	1.968e^-4	0.897	INTRON CG42732
X	13726958	X_13726958_SNP [dm3] X_13832925_SNP [dm6]	C	T	1.981e^-4	0.897	SYNONYMOUS_CODING AMPdeam UTR_3_PRIME AMPdeam
2L	21866041	2L_21866041_SNP [dm3] 2L_21866041_SNP [dm6]	A	G	1.996e^-4	0.897	DOWNSTREAM CR44919 INTRON CR44917 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	457362	2L_457362_SNP [dm3] 2L_457362_SNP [dm6]	C	T	1.997e^-4	0.897	INTRON CG4133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13300438	3L_13300438_SNP [dm3] 3L_13307338_SNP [dm6]	G	A	2.011e^-4	0.897	INTERGENIC
3L	13018800	3L_13018800_SNP [dm3] 3L_13025700_SNP [dm6]	C	T	2.014e^-4	0.897	SYNONYMOUS_CODING Zmynd10 DOWNSTREAM RpS12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	611750	X_611750_SNP [dm3] X_717717_SNP [dm6]	C	T	2.018e^-4	0.897	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12338520	X_12338520_SNP [dm3] X_12444487_SNP [dm6]	G	C	2.018e^-4	0.897	SYNONYMOUS_CODING Pkcdelta INTRON Pkcdelta
X	11848019	X_11848019_INS [dm3] X_11953986_INS [dm6]	G	CCC	2.024e^-4	0.897	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24702114	3R_24702114_SNP [dm3] 3R_28876392_SNP [dm6]	A	G	2.026e^-4	0.897	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	22083012	3L_22083012_SNP [dm3] 3L_22089912_SNP [dm6]	T	C	2.028e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14039455	3L_14039455_SNP [dm3] 3L_14046355_SNP [dm6]	C	A	2.029e^-4	0.897	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15641372	3L_15641372_SNP [dm3] 3L_15648272_SNP [dm6]	G	T	2.032e^-4	0.897	UPSTREAM CG43083 & 1 other DOWNSTREAM Eig71Ea INTERGENIC
3R	11140798	3R_11140798_SNP [dm3] 3R_15315076_SNP [dm6]	T	C	2.037e^-4	0.897	UTR_3_PRIME Tm2 DOWNSTREAM Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7406913	3L_7406913_SNP [dm3] 3L_7413813_SNP [dm6]	G	A	2.038e^-4	0.897	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14401572	2R_14401572_SNP [dm3] 2R_18514067_SNP [dm6]	C	T	2.042e^-4	0.897	UPSTREAM CG43066 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2998246	3L_2998246_SNP [dm3] 3L_2998246_SNP [dm6]	T	A	2.042e^-4	0.897	INTERGENIC
X	18199089	X_18199089_SNP [dm3] X_18305056_SNP [dm6]	C	A	2.052e^-4	0.897	DOWNSTREAM os INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18199119	X_18199119_SNP [dm3] X_18305086_SNP [dm6]	T	G	2.052e^-4	0.897	DOWNSTREAM os INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6407049	2R_6407049_SNP [dm3] 2R_10519544_SNP [dm6]	G	T	2.052e^-4	0.897	DOWNSTREAM lola INTRON lola
X	566022	X_566022_SNP [dm3] X_671989_SNP [dm6]	C	T	2.055e^-4	0.897	INTERGENIC
X	568525	X_568525_SNP [dm3] X_674492_SNP [dm6]	A	G	2.060e^-4	0.897	INTERGENIC
2L	22007625	2L_22007625_SNP [dm3] 2L_22007625_SNP [dm6]	A	T	2.062e^-4	0.897	INTERGENIC
X	20392179	X_20392179_SNP [dm3] X_20521152_SNP [dm6]	T	G	2.071e^-4	0.899	INTRON Tak1
2R	8545029	2R_8545029_SNP [dm3] 2R_12657524_SNP [dm6]	C	A	2.092e^-4	0.899	SYNONYMOUS_CODING CG8646	TF binding site mE1_TFBS_cad
3L	12857146	3L_12857146_SNP [dm3] 3L_12864046_SNP [dm6]	G	C	2.103e^-4	0.899	INTERGENIC
2L	19041409	2L_19041409_SNP [dm3] 2L_19041409_SNP [dm6]	G	A	2.105e^-4	0.899	UTR_3_PRIME mib2 UPSTREAM Catsup	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
X	3593079	X_3593079_DEL [dm3] X_3699046_DEL [dm6]	TTGTCAAA	C	2.108e^-4	0.899	INTRON Mnt
3R	17670142	3R_17670142_SNP [dm3] 3R_21844420_SNP [dm6]	G	C	2.118e^-4	0.899	SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15455787	X_15455787_SNP [dm3] X_15561754_SNP [dm6]	T	C	2.124e^-4	0.899	INTERGENIC
3L	4158495	3L_4158495_SNP [dm3] 3L_4158495_SNP [dm6]	G	A	2.128e^-4	0.899	INTRON nab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	552196	X_552196_SNP [dm3] X_658163_SNP [dm6]	C	T	2.130e^-4	0.899	DOWNSTREAM skpA INTERGENIC
2L	9167653	2L_9167653_SNP [dm3] 2L_9167653_SNP [dm6]	T	A	2.131e^-4	0.899	INTRON tai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2339891	2L_2339891_SNP [dm3] 2L_2339891_SNP [dm6]	A	C	2.139e^-4	0.899	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8820336	2L_8820336_INS [dm3] 2L_8820336_INS [dm6]	C	GAAATT	2.148e^-4	0.899	INTERGENIC
3L	8268156	3L_8268156_SNP [dm3] 3L_8275056_SNP [dm6]	G	A	2.150e^-4	0.899	INTRON Dscam4
2L	4454894	2L_4454894_SNP [dm3] 2L_4454894_SNP [dm6]	C	T	2.154e^-4	0.899	SYNONYMOUS_CODING CG15434 UPSTREAM CG15440 DOWNSTREAM Gs1l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6320297	3R_6320297_SNP [dm3] 3R_10494575_SNP [dm6]	G	T	2.158e^-4	0.899	INTERGENIC
3L	9905418	3L_9905418_INS [dm3] 3L_9912318_INS [dm6]	A	AG	2.159e^-4	0.899	INTRON CG34356
2R	7285414	2R_7285414_SNP [dm3] 2R_11397909_SNP [dm6]	G	T	2.160e^-4	0.899	UPSTREAM sprt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	4881421	X_4881421_SNP [dm3] X_4987388_SNP [dm6]	G	A	2.161e^-4	0.899	INTRON CR44833	regulatory region REDfly_CRMs
3R	19658405	3R_19658405_SNP [dm3] 3R_23832683_SNP [dm6]	C	T	2.169e^-4	0.899	INTRON CG34355	TF binding site mE1_TFBS_chinmo
3R	12151744	3R_12151744_SNP [dm3] 3R_16326022_SNP [dm6]	T	A	2.176e^-4	0.899	SPLICE_SITE_REGION CG17929 DOWNSTREAM CG6901 INTRON Sulf1 & 1 other
2L	8474553	2L_8474553_SNP [dm3] 2L_8474553_SNP [dm6]	G	A	2.202e^-4	0.899	INTRON d
3R	20300913	3R_20300913_SNP [dm3] 3R_24475191_SNP [dm6]	C	A	2.203e^-4	0.899	INTERGENIC
3R	10124394	3R_10124394_SNP [dm3] 3R_14298672_SNP [dm6]	T	A	2.206e^-4	0.899	UTR_5_PRIME CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7394814	3L_7394814_SNP [dm3] 3L_7401714_SNP [dm6]	C	G	2.206e^-4	0.899	DOWNSTREAM CG8560 & 1 other INTERGENIC
2L	1032579	2L_1032579_SNP [dm3] 2L_1032579_SNP [dm6]	C	T	2.208e^-4	0.899	INTRON IA-2
2L	4770897	2L_4770897_SNP [dm3] 2L_4770897_SNP [dm6]	G	C	2.220e^-4	0.899	INTRON CG15630
X	3935957	X_3935957_SNP [dm3] X_4041924_SNP [dm6]	G	A	2.225e^-4	0.899	INTERGENIC
2L	20801045	2L_20801045_INS [dm3] 2L_20801045_INS [dm6]	C	CCAC	2.225e^-4	0.899	INTRON CG9328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	5615990	2L_5615990_SNP [dm3] 2L_5615990_SNP [dm6]	T	A	2.229e^-4	0.899	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	21000867	2R_21000867_SNP [dm3] 2R_25113344_SNP [dm6]	T	A	2.236e^-4	0.899	INTRON lov	TF binding site BDTNP1_TFBS_z
X	2411129	X_2411129_SNP [dm3] X_2517096_SNP [dm6]	G	A	2.237e^-4	0.899	INTRON trol
2R	15266734	2R_15266734_SNP [dm3] 2R_19379229_SNP [dm6]	T	A	2.241e^-4	0.899	INTRON CG10062
3L	13112294	3L_13112294_SNP [dm3] 3L_13119194_SNP [dm6]	C	T	2.252e^-4	0.899	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	604104	X_604104_SNP [dm3] X_710071_SNP [dm6]	A	C	2.253e^-4	0.899	INTRON sdk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4125609	X_4125609_SNP [dm3] X_4231576_SNP [dm6]	C	A	2.268e^-4	0.899	INTERGENIC
3R	5733099	3R_5733099_SNP [dm3] 3R_9907377_SNP [dm6]	C	A	2.274e^-4	0.899	INTRON Glut4EF
3L	13018534	3L_13018534_SNP [dm3] 3L_13025434_SNP [dm6]	A	C	2.275e^-4	0.899	SPLICE_SITE_REGION Zmynd10 DOWNSTREAM RpS12 INTRON Zmynd10	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	4983415	2R_4983415_SNP [dm3] 2R_9095910_SNP [dm6]	C	T	2.288e^-4	0.899	UPSTREAM snoRNA:Me28S-G3255a & 3 others DOWNSTREAM snoRNA:Psi28S-2949 & 1 other EXON Uhg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	13300489	3L_13300489_SNP [dm3] 3L_13307389_SNP [dm6]	A	T	2.298e^-4	0.899	INTERGENIC
3R	5777175	3R_5777175_SNP [dm3] 3R_9951453_SNP [dm6]	G	A	2.299e^-4	0.899	INTRON Glut4EF
3R	26857200	3R_26857200_SNP [dm3] 3R_31031478_SNP [dm6]	T	G	2.301e^-4	0.899	INTERGENIC
2R	15266872	2R_15266872_SNP [dm3] 2R_19379367_SNP [dm6]	T	C	2.315e^-4	0.899	SPLICE_SITE_REGION CG10062 INTRON CG10062
3R	8160552	3R_8160552_SNP [dm3] 3R_12334830_SNP [dm6]	C	T	2.318e^-4	0.899	INTERGENIC
3L	1660508	3L_1660508_SNP [dm3] 3L_1660508_SNP [dm6]	G	T	2.319e^-4	0.899	DOWNSTREAM CG7971 INTRON CG7971	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15156418	3R_15156418_SNP [dm3] 3R_19330696_SNP [dm6]	C	T	2.320e^-4	0.899	EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13794427	2R_13794427_SNP [dm3] 2R_17906922_SNP [dm6]	G	A	2.322e^-4	0.899	INTRON Elk
2L	1056922	2L_1056922_SNP [dm3] 2L_1056922_SNP [dm6]	C	T	2.322e^-4	0.899	INTRON S	TF binding site BDTNP1_TFBS_da
2R	5674234	2R_5674234_SNP [dm3] 2R_9786729_SNP [dm6]	G	C	2.324e^-4	0.899	INTRON CG1688	TF binding site mE1_TFBS_cad
3L	15047775	3L_15047775_DEL [dm3] 3L_15054675_DEL [dm6]	GATG	G	2.325e^-4	0.899	UPSTREAM CG13463 & 1 other INTRON Sytbeta
3R	17618675	3R_17618675_INS [dm3] 3R_21792953_INS [dm6]	A	AA	2.330e^-4	0.899	INTRON CASK	TF binding site mE1_TFBS_cad
3L	13300500	3L_13300500_SNP [dm3] 3L_13307400_SNP [dm6]	T	C	2.331e^-4	0.899	INTERGENIC
2R	4981126	2R_4981126_SNP [dm3] 2R_9093621_SNP [dm6]	C	A	2.340e^-4	0.899	NON_SYNONYMOUS_CODING CG13741 UPSTREAM CG8080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	2802010	X_2802010_SNP [dm3] X_2907977_SNP [dm6]	C	T	2.341e^-4	0.899	INTRON kirre
2R	21001005	2R_21001005_SNP [dm3] 2R_25113482_SNP [dm6]	C	A	2.341e^-4	0.899	INTRON lov	TF binding site BDTNP1_TFBS_z
2L	1268834	2L_1268834_SNP [dm3] 2L_1268834_SNP [dm6]	C	T	2.342e^-4	0.899	INTRON robo3
2L	14772938	2L_14772938_SNP [dm3] 2L_14772938_SNP [dm6]	G	A	2.354e^-4	0.899	DOWNSTREAM CG4650 INTERGENIC
2R	15162174	2R_15162174_SNP [dm3] 2R_19274669_SNP [dm6]	T	A	2.355e^-4	0.899	INTRON rib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Ubx
3L	3566281	3L_3566281_SNP [dm3] 3L_3566281_SNP [dm6]	G	A	2.356e^-4	0.899	INTRON Eip63E
X	8887033	X_8887033_SNP [dm3] X_8993000_SNP [dm6]	G	A	2.356e^-4	0.899	DOWNSTREAM mir-31b INTRON rdgA & 1 other
2L	9621954	2L_9621954_SNP [dm3] 2L_9621954_SNP [dm6]	A	T	2.357e^-4	0.899	SPLICE_SITE_REGION GlcAT-S INTRON GlcAT-S
2R	20987351	2R_20987351_SNP [dm3] 2R_25099828_SNP [dm6]	C	G	2.359e^-4	0.899	UPSTREAM lov INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11183159	2L_11183159_SNP [dm3] 2L_11183159_SNP [dm6]	G	C	2.369e^-4	0.901	INTRON Ca-beta
3L	18196036	3L_18196036_SNP [dm3] 3L_18202936_SNP [dm6]	C	G	2.381e^-4	0.901	SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4314180	2L_4314180_SNP [dm3] 2L_4314180_SNP [dm6]	G	A	2.382e^-4	0.901	INTRON tutl
2R	1077940	2R_1077940_SNP [dm3] 2R_5190435_SNP [dm6]	C	T	2.410e^-4	0.901	INTRON Nipped-A	transposable element FlyBase
X	8749067	X_8749067_SNP [dm3] X_8855034_SNP [dm6]	G	C	2.413e^-4	0.901	INTRON CG12075
3L	1294940	3L_1294940_SNP [dm3] 3L_1294940_SNP [dm6]	C	T	2.413e^-4	0.901	UTR_3_PRIME CG32333 UPSTREAM Rabex-5 DOWNSTREAM CG32333	TF binding site BDTNP1_TFBS_dl
3L	13300509	3L_13300509_SNP [dm3] 3L_13307409_SNP [dm6]	T	G	2.417e^-4	0.901	INTERGENIC
2L	2312847	2L_2312847_DEL [dm3] 2L_2312847_DEL [dm6]	GAATTTC	G	2.418e^-4	0.901	INTRON CG9967 & 1 other
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	2.420e^-4	0.901	INTERGENIC
3R	14101788	3R_14101788_SNP [dm3] 3R_18276066_SNP [dm6]	C	T	2.426e^-4	0.901	INTRON eIF-1A	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	576410	X_576410_SNP [dm3] X_682377_SNP [dm6]	G	A	2.429e^-4	0.901	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9891533	2L_9891533_SNP [dm3] 2L_9891533_SNP [dm6]	A	G	2.436e^-4	0.901	SYNONYMOUS_CODING mtDNA-helicase UPSTREAM CG34183 DOWNSTREAM CG4537	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7422007	3L_7422007_SNP [dm3] 3L_7428907_SNP [dm6]	C	A	2.442e^-4	0.901	INTRON CG42458
2L	8820955	2L_8820955_SNP [dm3] 2L_8820955_SNP [dm6]	A	G	2.446e^-4	0.901	INTERGENIC
2L	14412038	2L_14412038_SNP [dm3] 2L_14412038_SNP [dm6]	C	A	2.449e^-4	0.901	INTERGENIC
3R	11497896	3R_11497896_SNP [dm3] 3R_15672174_SNP [dm6]	A	T	2.454e^-4	0.901	SYNONYMOUS_CODING pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3L	13547381	3L_13547381_SNP [dm3] 3L_13554281_SNP [dm6]	T	A	2.458e^-4	0.901	INTRON bru-3
3L	18081870	3L_18081870_SNP [dm3] 3L_18088770_SNP [dm6]	T	C	2.461e^-4	0.901	UTR_3_PRIME CG13698 DOWNSTREAM CG13698
2L	8820294	2L_8820294_SNP [dm3] 2L_8820294_SNP [dm6]	G	A	2.464e^-4	0.901	INTERGENIC
2L	5611694	2L_5611694_DEL [dm3] 2L_5611694_DEL [dm6]	AA	A	2.466e^-4	0.901	INTRON CG14010
3L	16639362	3L_16639362_SNP [dm3] 3L_16646262_SNP [dm6]	G	A	2.469e^-4	0.901	INTRON Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25700668	3R_25700668_SNP [dm3] 3R_29874946_SNP [dm6]	T	C	2.488e^-4	0.901	UTR_3_PRIME CG34133 DOWNSTREAM CG34133
2L	21892258	2L_21892258_SNP [dm3] 2L_21892258_SNP [dm6]	A	G	2.493e^-4	0.901	INTERGENIC
2R	6155120	2R_6155120_SNP [dm3] 2R_10267615_SNP [dm6]	T	A	2.495e^-4	0.901	INTRON CG12910
2L	8820920	2L_8820920_SNP [dm3] 2L_8820920_SNP [dm6]	G	A	2.497e^-4	0.901	INTERGENIC
2L	8820904	2L_8820904_SNP [dm3] 2L_8820904_SNP [dm6]	A	G	2.505e^-4	0.901	INTERGENIC
3L	1388039	3L_1388039_SNP [dm3] 3L_1388039_SNP [dm6]	T	A	2.509e^-4	0.901	DOWNSTREAM ru INTRON Ptp61F
2L	8821062	2L_8821062_SNP [dm3] 2L_8821062_SNP [dm6]	T	G	2.522e^-4	0.901	INTERGENIC
2L	8821067	2L_8821067_SNP [dm3] 2L_8821067_SNP [dm6]	G	A	2.522e^-4	0.901	INTERGENIC
3L	10012146	3L_10012146_SNP [dm3] 3L_10019046_SNP [dm6]	G	C	2.524e^-4	0.901	INTRON dpr6
3L	9971496	3L_9971496_SNP [dm3] 3L_9978396_SNP [dm6]	A	T	2.528e^-4	0.901	INTRON dpr6
2L	9891324	2L_9891324_SNP [dm3] 2L_9891324_SNP [dm6]	C	A	2.559e^-4	0.901	UTR_3_PRIME mtDNA-helicase & 1 other UPSTREAM CG34183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2839394	2R_2839394_SNP [dm3] 2R_6951889_SNP [dm6]	T	A	2.564e^-4	0.901	INTRON mim & 2 others
3L	18944774	3L_18944774_SNP [dm3] 3L_18951674_SNP [dm6]	A	G	2.569e^-4	0.901	INTRON CG6836
3L	18944788	3L_18944788_SNP [dm3] 3L_18951688_SNP [dm6]	G	T	2.569e^-4	0.901	INTRON CG6836
3L	18944789	3L_18944789_SNP [dm3] 3L_18951689_SNP [dm6]	G	T	2.569e^-4	0.901	INTRON CG6836
2R	17794746	2R_17794746_SNP [dm3] 2R_21907241_SNP [dm6]	A	G	2.570e^-4	0.901	INTRON Fili	TF binding site mE1_TFBS_HSA
3L	417974	3L_417974_SNP [dm3] 3L_417974_SNP [dm6]	T	A	2.578e^-4	0.901	INTERGENIC	regulatory region REDfly_CRMs
3R	18743458	3R_18743458_SNP [dm3] 3R_22917736_SNP [dm6]	G	C	2.580e^-4	0.901	INTRON klg
2R	12576992	2R_12576992_SNP [dm3] 2R_16689487_SNP [dm6]	A	C	2.587e^-4	0.901	INTRON CG30463
2R	6270158	2R_6270158_SNP [dm3] 2R_10382653_SNP [dm6]	A	T	2.588e^-4	0.901	INTRON CG42732	TF binding site mE1_TFBS_sbb
X	8262472	X_8262472_SNP [dm3] X_8368439_SNP [dm6]	C	T	2.592e^-4	0.901	INTERGENIC
2L	15134477	2L_15134477_INS [dm3] 2L_15134477_INS [dm6]	C	TA	2.605e^-4	0.901	INTERGENIC
3R	5646423	3R_5646423_SNP [dm3] 3R_9820701_SNP [dm6]	A	T	2.613e^-4	0.901	SYNONYMOUS_CODING CG42857 UPSTREAM CG9458
2R	21133094	2R_21133094_SNP [dm3] 2R_25245571_SNP [dm6]	A	G	2.615e^-4	0.901	UPSTREAM CG30429 INTRON CG9380	TF binding site mE1_TFBS_kn
2R	20998983	2R_20998983_SNP [dm3] 2R_25111460_SNP [dm6]	T	C	2.620e^-4	0.901	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	8408576	3L_8408576_SNP [dm3] 3L_8415476_SNP [dm6]	A	G	2.622e^-4	0.901	DOWNSTREAM CG32354 INTRON Exo70
3R	24839606	3R_24839606_SNP [dm3] 3R_29013884_SNP [dm6]	G	T	2.624e^-4	0.901	INTRON wat
2R	20995696	2R_20995696_SNP [dm3] 2R_25108173_SNP [dm6]	A	C	2.632e^-4	0.901	INTRON lov	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23229668	3R_23229668_SNP [dm3] 3R_27403946_SNP [dm6]	T	G	2.636e^-4	0.901	INTRON side
2R	9664891	2R_9664891_SNP [dm3] 2R_13777386_SNP [dm6]	T	A	2.637e^-4	0.901	DOWNSTREAM S-Lap7 INTRON Cpr50Ca
2R	21050122	2R_21050122_DEL [dm3] 2R_25162599_DEL [dm6]	AGTCGA	A	2.645e^-4	0.901	INTERGENIC
3L	821393	3L_821393_SNP [dm3] 3L_821393_SNP [dm6]	G	T	2.651e^-4	0.901	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13680714	3L_13680714_DEL [dm3] 3L_13687614_DEL [dm6]	GTTTTGTGCACGACTTGG...	G	2.651e^-4	0.901	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	19354583	2R_19354583_SNP [dm3] 2R_23467060_SNP [dm6]	G	C	2.654e^-4	0.901	SYNONYMOUS_CODING CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6269384	2R_6269384_SNP [dm3] 2R_10381879_SNP [dm6]	C	A	2.659e^-4	0.901	INTRON CG42732	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8268150	3L_8268150_SNP [dm3] 3L_8275050_SNP [dm6]	T	A	2.666e^-4	0.901	INTRON Dscam4
X	591889	X_591889_SNP [dm3] X_697856_SNP [dm6]	C	T	2.668e^-4	0.901	INTRON sdk	TF binding site mE1_TFBS_sens
3L	12133190	3L_12133190_SNP [dm3] 3L_12140090_SNP [dm6]	C	T	2.673e^-4	0.901	UTR_5_PRIME RhoGAP68F
2L	14932403	2L_14932403_SNP [dm3] 2L_14932403_SNP [dm6]	T	A	2.673e^-4	0.901	INTRON CG42313
2L	22039854	2L_22039854_SNP [dm3] 2L_22039854_SNP [dm6]	C	T	2.674e^-4	0.901	DOWNSTREAM CG41434 & 1 other INTERGENIC
2R	1079738	2R_1079738_SNP [dm3] 2R_5192233_SNP [dm6]	A	G	2.675e^-4	0.901	INTRON Nipped-A	transposable element FlyBase
2L	8820212	2L_8820212_SNP [dm3] 2L_8820212_SNP [dm6]	A	C	2.691e^-4	0.901	INTERGENIC
3R	5761164	3R_5761164_SNP [dm3] 3R_9935442_SNP [dm6]	C	A	2.693e^-4	0.901	INTRON Glut4EF
3L	12626933	3L_12626933_SNP [dm3] 3L_12633833_SNP [dm6]	T	C	2.694e^-4	0.901	INTRON CR32111 EXON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16392605	3R_16392605_SNP [dm3] 3R_20566883_SNP [dm6]	T	C	2.703e^-4	0.901	INTRON CG5191
X	495882	X_495882_SNP [dm3] X_601849_SNP [dm6]	G	T	2.704e^-4	0.901	INTRON CG13366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4356059	3L_4356059_SNP [dm3] 3L_4356059_SNP [dm6]	C	T	2.709e^-4	0.901	INTRON Cip4
X	17121413	X_17121413_SNP [dm3] X_17227380_SNP [dm6]	G	T	2.715e^-4	0.901	UPSTREAM CG10598 INTERGENIC
2L	21973169	2L_21973169_SNP [dm3] 2L_21973169_SNP [dm6]	G	A	2.722e^-4	0.901	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7670914	X_7670914_SNP [dm3] X_7776881_SNP [dm6]	A	G	2.722e^-4	0.901	INTERGENIC
2L	8820353	2L_8820353_SNP [dm3] 2L_8820353_SNP [dm6]	G	A	2.728e^-4	0.901	INTERGENIC
3R	6373031	3R_6373031_SNP [dm3] 3R_10547309_SNP [dm6]	G	T	2.730e^-4	0.901	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2411283	2R_2411283_SNP [dm3] 2R_6523778_SNP [dm6]	A	T	2.732e^-4	0.901	INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25697128	3R_25697128_DEL [dm3] 3R_29871406_DEL [dm6]	ACATAG	A	2.734e^-4	0.901	INTRON CG34133	TF binding site mE1_TFBS_cad
2R	10054413	2R_10054413_SNP [dm3] 2R_14166908_SNP [dm6]	G	A	2.738e^-4	0.901	UTR_3_PRIME CG8323 UPSTREAM CG18327	TF binding site mE1_TFBS_chinmo
2R	4988825	2R_4988825_SNP [dm3] 2R_9101320_SNP [dm6]	C	T	2.738e^-4	0.901	SYNONYMOUS_CODING CG8777	TF binding site mE1_TFBS_cad
3L	2037735	3L_2037735_SNP [dm3] 3L_2037735_SNP [dm6]	G	C	2.742e^-4	0.901	NON_SYNONYMOUS_CODING CG42355
3R	21744505	3R_21744505_SNP [dm3] 3R_25918783_SNP [dm6]	C	T	2.745e^-4	0.901	SYNONYMOUS_CODING CG42235 INTRON CG42235
3R	22505097	3R_22505097_SNP [dm3] 3R_26679375_SNP [dm6]	G	T	2.747e^-4	0.901	INTRON beat-VII	TF binding site mE1_TFBS_chinmo
2L	20857347	2L_20857347_SNP [dm3] 2L_20857347_SNP [dm6]	G	A	2.764e^-4	0.902	NON_SYNONYMOUS_CODING CG14400 DOWNSTREAM twit	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10423353	3R_10423353_SNP [dm3] 3R_14597631_SNP [dm6]	G	A	2.767e^-4	0.902	INTRON stumps	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8343483	2R_8343483_INS [dm3] 2R_12455978_INS [dm6]	T	TGTTTCT	2.774e^-4	0.902	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14520644	2L_14520644_SNP [dm3] 2L_14520644_SNP [dm6]	T	A	2.775e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21751855	3R_21751855_SNP [dm3] 3R_25926133_SNP [dm6]	G	T	2.775e^-4	0.902	INTRON CCAP-R
2L	19330255	2L_19330255_SNP [dm3] 2L_19330255_SNP [dm6]	T	G	2.780e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1449841	2L_1449841_SNP [dm3] 2L_1449841_SNP [dm6]	C	G	2.800e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	15842780	3R_15842780_DEL [dm3] 3R_20017058_DEL [dm6]	GTCACTTGAT	G	2.801e^-4	0.902	INTRON CG4836	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8820118	2L_8820118_SNP [dm3] 2L_8820118_SNP [dm6]	C	T	2.807e^-4	0.902	INTERGENIC
3L	3480548	3L_3480548_SNP [dm3] 3L_3480548_SNP [dm6]	A	C	2.809e^-4	0.902	INTRON CG42324
2R	21008539	2R_21008539_SNP [dm3] 2R_25121016_SNP [dm6]	G	A	2.815e^-4	0.902	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12641995	3L_12641995_SNP [dm3] 3L_12648895_SNP [dm6]	C	G	2.815e^-4	0.902	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	21978715	X_21978715_SNP [dm3] X_22576879_SNP [dm6]	G	T	2.817e^-4	0.902	INTERGENIC	transposable element FlyBase
3L	6994073	3L_6994073_SNP [dm3] 3L_7000973_SNP [dm6]	T	C	2.820e^-4	0.902	INTRON Mp
2R	20990675	2R_20990675_SNP [dm3] 2R_25103152_SNP [dm6]	C	T	2.850e^-4	0.903	INTRON lov
3L	6458717	3L_6458717_SNP [dm3] 3L_6465617_SNP [dm6]	T	A	2.853e^-4	0.903	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24848403	3R_24848403_SNP [dm3] 3R_29022681_SNP [dm6]	A	G	2.853e^-4	0.903	UPSTREAM CR44264 EXON CR45567
X	8641466	X_8641466_SNP [dm3] X_8747433_SNP [dm6]	A	G	2.856e^-4	0.903	INTERGENIC
3R	5749466	3R_5749466_SNP [dm3] 3R_9923744_SNP [dm6]	T	C	2.872e^-4	0.903	INTRON Glut4EF
2L	9031292	2L_9031292_SNP [dm3] 2L_9031292_SNP [dm6]	C	T	2.883e^-4	0.903	INTRON CG9582 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	11549157	3R_11549157_SNP [dm3] 3R_15723435_SNP [dm6]	T	C	2.883e^-4	0.903	INTERGENIC
3L	3565389	3L_3565389_SNP [dm3] 3L_3565389_SNP [dm6]	C	A	2.890e^-4	0.903	INTRON Eip63E
2R	21094998	2R_21094998_SNP [dm3] 2R_25207475_SNP [dm6]	G	A	2.910e^-4	0.903	INTRON CG9380
3R	25696931	3R_25696931_SNP [dm3] 3R_29871209_SNP [dm6]	G	A	2.913e^-4	0.903	INTRON CG34133	TF binding site mE1_TFBS_cad
3L	11146707	3L_11146707_SNP [dm3] 3L_11153607_SNP [dm6]	A	G	2.930e^-4	0.903	INTRON CG32082
3L	8842601	3L_8842601_SNP [dm3] 3L_8849501_SNP [dm6]	T	C	2.935e^-4	0.903	INTRON dally
2R	21002598	2R_21002598_SNP [dm3] 2R_25115075_SNP [dm6]	C	G	2.940e^-4	0.903	INTRON lov	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	20804884	2L_20804884_SNP [dm3] 2L_20804884_SNP [dm6]	T	C	2.959e^-4	0.903	INTRON CG9328
3R	14330225	3R_14330225_INS [dm3] 3R_18504503_INS [dm6]	A	ACCT	2.960e^-4	0.903	UPSTREAM fru INTRON fru
3R	14330227	3R_14330227_SNP [dm3] 3R_18504505_SNP [dm6]	G	A	2.960e^-4	0.903	UPSTREAM fru INTRON fru
X	8431359	X_8431359_SNP [dm3] X_8537326_SNP [dm6]	A	C	2.960e^-4	0.903	INTRON Nrg
3L	429160	3L_429160_SNP [dm3] 3L_429160_SNP [dm6]	G	A	2.961e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10128588	3L_10128588_SNP [dm3] 3L_10135488_SNP [dm6]	G	A	2.963e^-4	0.903	INTRON dpr6	TF binding site mE1_TFBS_chinmo
2R	21131554	2R_21131554_SNP [dm3] 2R_25244031_SNP [dm6]	C	A	2.975e^-4	0.903	INTRON CG9380
2L	19330062	2L_19330062_SNP [dm3] 2L_19330062_SNP [dm6]	A	G	2.979e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5531339	3L_5531339_SNP [dm3] 3L_5538239_SNP [dm6]	C	T	2.983e^-4	0.903	DOWNSTREAM CG10625 INTERGENIC
3L	12846945	3L_12846945_INS [dm3] 3L_12853845_INS [dm6]	T	TAT	2.985e^-4	0.903	UTR_5_PRIME Ent3 DOWNSTREAM Wbp2
2L	18132660	2L_18132660_SNP [dm3] 2L_18132660_SNP [dm6]	G	T	2.998e^-4	0.903	INTRON kel
3L	12857138	3L_12857138_SNP [dm3] 3L_12864038_SNP [dm6]	G	A	3.013e^-4	0.903	INTERGENIC
X	557161	X_557161_SNP [dm3] X_663128_SNP [dm6]	C	A	3.013e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11866259	3L_11866259_SNP [dm3] 3L_11873159_SNP [dm6]	C	A	3.015e^-4	0.903	INTRON CG44837
2R	14183216	2R_14183216_SNP [dm3] 2R_18295711_SNP [dm6]	A	G	3.019e^-4	0.903	UPSTREAM CG18537 DOWNSTREAM CG14502 & 1 other INTRON sbb
3L	2040709	3L_2040709_SNP [dm3] 3L_2040709_SNP [dm6]	C	A	3.020e^-4	0.903	INTRON sls
2L	10439019	2L_10439019_SNP [dm3] 2L_10439019_SNP [dm6]	T	C	3.025e^-4	0.903	SYNONYMOUS_CODING CHIP UPSTREAM CG13142	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25006803	3R_25006803_SNP [dm3] 3R_29181081_SNP [dm6]	C	A	3.040e^-4	0.903	INTRON CG14509
3R	25006804	3R_25006804_SNP [dm3] 3R_29181082_SNP [dm6]	C	A	3.040e^-4	0.903	INTRON CG14509
3R	21738477	3R_21738477_SNP [dm3] 3R_25912755_SNP [dm6]	C	A	3.046e^-4	0.903	NON_SYNONYMOUS_CODING CG42235 INTRON CG42235
2L	9080110	2L_9080110_SNP [dm3] 2L_9080110_SNP [dm6]	T	G	3.050e^-4	0.903	INTERGENIC
2R	6406992	2R_6406992_DEL [dm3] 2R_10519487_DEL [dm6]	ATA	A	3.053e^-4	0.903	DOWNSTREAM lola INTRON lola
2L	15056106	2L_15056106_SNP [dm3] 2L_15056106_SNP [dm6]	G	A	3.055e^-4	0.903	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	1129068	3L_1129068_DEL [dm3] 3L_1129068_DEL [dm6]	AG	A	3.067e^-4	0.903	INTERGENIC	regulatory region REDfly_CRMs
X	2804490	X_2804490_SNP [dm3] X_2910457_SNP [dm6]	T	G	3.067e^-4	0.903	INTRON kirre
2R	10961689	2R_10961689_SNP [dm3] 2R_15074184_SNP [dm6]	A	G	3.069e^-4	0.903	INTERGENIC
3L	10602199	3L_10602199_SNP [dm3] 3L_10609099_SNP [dm6]	T	C	3.071e^-4	0.903	INTERGENIC
2L	6320856	2L_6320856_SNP [dm3] 2L_6320856_SNP [dm6]	T	A	3.072e^-4	0.903	INTRON Ddr
2L	7475771	2L_7475771_SNP [dm3] 2L_7475771_SNP [dm6]	A	G	3.075e^-4	0.903	NON_SYNONYMOUS_CODING CG6441 INTRON Ziz
X	563206	X_563206_SNP [dm3] X_669173_SNP [dm6]	G	T	3.075e^-4	0.903	INTERGENIC
3R	18260418	3R_18260418_SNP [dm3] 3R_22434696_SNP [dm6]	A	T	3.085e^-4	0.903	INTRON CG13847
2L	16914532	2L_16914532_SNP [dm3] 2L_16914532_SNP [dm6]	C	G	3.089e^-4	0.903	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17300486	2L_17300486_SNP [dm3] 2L_17300486_SNP [dm6]	A	G	3.092e^-4	0.903	INTERGENIC
3L	6177421	3L_6177421_SNP [dm3] 3L_6184321_SNP [dm6]	A	G	3.093e^-4	0.903	NON_SYNONYMOUS_CODING D19B UPSTREAM CG43293	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
2R	19200635	2R_19200635_SNP [dm3] 2R_23313112_SNP [dm6]	A	T	3.106e^-4	0.903	NON_SYNONYMOUS_CODING HP1Lcsd	TF binding site mE1_TFBS_cad
2R	19195360	2R_19195360_SNP [dm3] 2R_23307837_SNP [dm6]	A	T	3.112e^-4	0.903	DOWNSTREAM Prosbeta5R1 INTERGENIC
2L	20850302	2L_20850302_SNP [dm3] 2L_20850302_SNP [dm6]	T	A	3.116e^-4	0.903	UTR_3_PRIME CG14402
2R	2079269	2R_2079269_SNP [dm3] 2R_6191764_SNP [dm6]	C	T	3.127e^-4	0.903	INTRON Ptr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3268645	2L_3268645_SNP [dm3] 2L_3268645_SNP [dm6]	G	C	3.137e^-4	0.903	UPSTREAM CG3347 EXON CR44484
2L	8530943	2L_8530943_SNP [dm3] 2L_8530943_SNP [dm6]	T	A	3.139e^-4	0.903	INTRON CG17834
3L	12374790	3L_12374790_SNP [dm3] 3L_12381690_SNP [dm6]	A	T	3.140e^-4	0.903	INTRON Ncc69	TF binding site mE1_TFBS_inv
3R	5758477	3R_5758477_SNP [dm3] 3R_9932755_SNP [dm6]	C	T	3.142e^-4	0.903	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	21009646	2R_21009646_SNP [dm3] 2R_25122123_SNP [dm6]	G	A	3.156e^-4	0.903	INTRON lov
2L	1042419	2L_1042419_SNP [dm3] 2L_1042419_SNP [dm6]	A	G	3.159e^-4	0.903	INTRON IA-2
3R	4867188	3R_4867188_SNP [dm3] 3R_9041466_SNP [dm6]	C	A	3.166e^-4	0.903	SPLICE_SITE_REGION hyx INTRON hyx
2L	14976089	2L_14976089_SNP [dm3] 2L_14976089_SNP [dm6]	A	T	3.170e^-4	0.903	UTR_3_PRIME mol
2L	6090925	2L_6090925_SNP [dm3] 2L_6090925_SNP [dm6]	C	A	3.173e^-4	0.903	UPSTREAM Kr-h1 & 1 other INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	8162768	X_8162768_SNP [dm3] X_8268735_SNP [dm6]	A	T	3.180e^-4	0.903	INTRON CG1632	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4364280	X_4364280_SNP [dm3] X_4470247_SNP [dm6]	T	G	3.187e^-4	0.903	INTRON bi & 1 other
2R	9905560	2R_9905560_SNP [dm3] 2R_14018055_SNP [dm6]	A	G	3.195e^-4	0.903	INTRON mam
2L	457325	2L_457325_SNP [dm3] 2L_457325_SNP [dm6]	C	T	3.196e^-4	0.903	SYNONYMOUS_CODING CG4133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4371729	2L_4371729_SNP [dm3] 2L_4371729_SNP [dm6]	G	A	3.199e^-4	0.903	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	6016562	X_6016562_SNP [dm3] X_6122529_SNP [dm6]	A	G	3.203e^-4	0.903	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16478838	X_16478838_SNP [dm3] X_16584805_SNP [dm6]	G	T	3.210e^-4	0.903	INTRON CanA-14F
3L	645000	3L_645000_SNP [dm3] 3L_645000_SNP [dm6]	G	A	3.213e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6211608	2R_6211608_SNP [dm3] 2R_10324103_SNP [dm6]	G	A	3.215e^-4	0.903	INTRON CG42732
2L	14344797	2L_14344797_SNP [dm3] 2L_14344797_SNP [dm6]	G	C	3.219e^-4	0.903	NON_SYNONYMOUS_CODING CG33090	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16914904	2L_16914904_SNP [dm3] 2L_16914904_SNP [dm6]	T	G	3.222e^-4	0.903	SYNONYMOUS_CODING tweek
2R	4984133	2R_4984133_SNP [dm3] 2R_9096628_SNP [dm6]	G	T	3.231e^-4	0.903	UPSTREAM snoRNA:Me28S-G3255b & 1 other DOWNSTREAM snoRNA:Or-aca5 & 4 others INTRON Uhg4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11523033	3L_11523033_SNP [dm3] 3L_11529933_SNP [dm6]	G	A	3.232e^-4	0.903	INTRON Mob2
2R	8939250	2R_8939250_SNP [dm3] 2R_13051745_SNP [dm6]	C	T	3.234e^-4	0.903	INTERGENIC
2L	19341190	2L_19341190_SNP [dm3] 2L_19341190_SNP [dm6]	G	A	3.237e^-4	0.903	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14994344	3L_14994344_DEL [dm3] 3L_15001244_DEL [dm6]	TT	T	3.241e^-4	0.903	UTR_3_PRIME Prosbeta2 & 1 other	TF binding site mE1_TFBS_inv
3L	10344903	3L_10344903_SNP [dm3] 3L_10351803_SNP [dm6]	C	T	3.246e^-4	0.903	INTRON CR44327
X	12338505	X_12338505_SNP [dm3] X_12444472_SNP [dm6]	T	A	3.248e^-4	0.903	SYNONYMOUS_CODING Pkcdelta INTRON Pkcdelta
3L	16635166	3L_16635166_SNP [dm3] 3L_16642066_SNP [dm6]	C	T	3.249e^-4	0.903	INTRON Abl
3L	12431519	3L_12431519_SNP [dm3] 3L_12438419_SNP [dm6]	C	A	3.250e^-4	0.903	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2790602	X_2790602_SNP [dm3] X_2896569_SNP [dm6]	T	C	3.251e^-4	0.903	INTRON kirre
2R	11277255	2R_11277255_SNP [dm3] 2R_15389750_SNP [dm6]	A	C	3.256e^-4	0.903	INTERGENIC
X	3033276	X_3033276_SNP [dm3] X_3139243_SNP [dm6]	A	G	3.261e^-4	0.903	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14344794	2L_14344794_SNP [dm3] 2L_14344794_SNP [dm6]	G	C	3.265e^-4	0.903	NON_SYNONYMOUS_CODING CG33090	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5755641	3R_5755641_SNP [dm3] 3R_9929919_SNP [dm6]	C	G	3.267e^-4	0.903	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
3R	14009721	3R_14009721_SNP [dm3] 3R_18183999_SNP [dm6]	T	A	3.268e^-4	0.903	SYNONYMOUS_CODING CG7208 UPSTREAM cdm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8262565	X_8262565_SNP [dm3] X_8368532_SNP [dm6]	T	C	3.271e^-4	0.903	INTERGENIC
3R	5758129	3R_5758129_SNP [dm3] 3R_9932407_SNP [dm6]	G	A	3.283e^-4	0.903	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	575144	X_575144_SNP [dm3] X_681111_SNP [dm6]	T	G	3.288e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_eve mE1_TFBS_HSA
2L	1449807	2L_1449807_SNP [dm3] 2L_1449807_SNP [dm6]	C	A	3.295e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	13338590	3L_13338590_SNP [dm3] 3L_13345490_SNP [dm6]	T	C	3.297e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16841932	3R_16841932_SNP [dm3] 3R_21016210_SNP [dm6]	C	A	3.301e^-4	0.903	DOWNSTREAM Calx INTRON CG5697	TF binding site mE1_TFBS_cad
3L	13300504	3L_13300504_SNP [dm3] 3L_13307404_SNP [dm6]	C	T	3.306e^-4	0.903	INTERGENIC
2L	1449813	2L_1449813_DEL [dm3] 2L_1449813_DEL [dm6]	AAATTCTAATAT...	A	3.315e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	14994786	3L_14994786_SNP [dm3] 3L_15001686_SNP [dm6]	T	A	3.320e^-4	0.903	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
3R	11497974	3R_11497974_SNP [dm3] 3R_15672252_SNP [dm6]	C	A	3.322e^-4	0.903	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	5500931	2L_5500931_SNP [dm3] 2L_5500931_SNP [dm6]	T	C	3.329e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20826391	2L_20826391_SNP [dm3] 2L_20826391_SNP [dm6]	C	T	3.331e^-4	0.903	INTRON CG9331	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	21897908	X_21897908_SNP [dm3] X_22496072_SNP [dm6]	C	T	3.336e^-4	0.903	SYNONYMOUS_CODING l_1_G0196
2L	4598038	2L_4598038_SNP [dm3] 2L_4598038_SNP [dm6]	A	G	3.338e^-4	0.903	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2044737	3L_2044737_SNP [dm3] 3L_2044737_SNP [dm6]	G	A	3.345e^-4	0.903	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12858177	3L_12858177_SNP [dm3] 3L_12865077_SNP [dm6]	C	T	3.350e^-4	0.903	INTERGENIC
3R	22857915	3R_22857915_SNP [dm3] 3R_27032193_SNP [dm6]	A	G	3.351e^-4	0.903	INTRON RYa-R
2L	9262338	2L_9262338_SNP [dm3] 2L_9262338_SNP [dm6]	G	T	3.351e^-4	0.903	INTRON Ggamma30A EXON CR45262
3L	13300490	3L_13300490_SNP [dm3] 3L_13307390_SNP [dm6]	G	T	3.351e^-4	0.903	INTERGENIC
2L	15056282	2L_15056282_SNP [dm3] 2L_15056282_SNP [dm6]	T	C	3.353e^-4	0.903	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	20805168	2L_20805168_SNP [dm3] 2L_20805168_SNP [dm6]	C	T	3.357e^-4	0.903	INTRON CG9328	TF binding site mE1_TFBS_zfh1
2L	828816	2L_828816_SNP [dm3] 2L_828816_SNP [dm6]	G	A	3.358e^-4	0.903	INTRON dock	TF binding site mE1_TFBS_sens
X	18960974	X_18960974_SNP [dm3] X_19066941_SNP [dm6]	A	C	3.360e^-4	0.903	NON_SYNONYMOUS_CODING CG14190	TF binding site mE1_TFBS_chinmo
X	16079949	X_16079949_INS [dm3] X_16185916_INS [dm6]	T	TT	3.365e^-4	0.903	INTERGENIC
3R	25202986	3R_25202986_SNP [dm3] 3R_29377264_SNP [dm6]	G	A	3.365e^-4	0.903	UPSTREAM Ptp99A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	11733047	X_11733047_SNP [dm3] X_11839014_SNP [dm6]	T	C	3.373e^-4	0.903	UPSTREAM CG15741 & 1 other DOWNSTREAM CR43908 INTERGENIC
3L	12398064	3L_12398064_SNP [dm3] 3L_12404964_SNP [dm6]	T	A	3.377e^-4	0.903	INTRON CG32103	TF binding site mE1_TFBS_cad
3L	12398083	3L_12398083_SNP [dm3] 3L_12404983_SNP [dm6]	T	A	3.377e^-4	0.903	INTRON CG32103	TF binding site mE1_TFBS_cad
2R	9165306	2R_9165306_SNP [dm3] 2R_13277801_SNP [dm6]	G	A	3.380e^-4	0.903	INTRON Dh31-R
2R	17029949	2R_17029949_SNP [dm3] 2R_21142444_SNP [dm6]	T	A	3.386e^-4	0.903	UTR_5_PRIME CG9406 UPSTREAM Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb mE1_TFBS_sens
3L	3661195	3L_3661195_SNP [dm3] 3L_3661195_SNP [dm6]	T	C	3.388e^-4	0.903	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	5773834	3R_5773834_SNP [dm3] 3R_9948112_SNP [dm6]	G	A	3.399e^-4	0.903	INTRON Glut4EF
3L	1294618	3L_1294618_SNP [dm3] 3L_1294618_SNP [dm6]	G	A	3.402e^-4	0.903	UTR_3_PRIME CG32333 DOWNSTREAM CG32333
2L	2263043	2L_2263043_SNP [dm3] 2L_2263043_SNP [dm6]	C	T	3.403e^-4	0.903	UPSTREAM CG4270 INTERGENIC
3L	2390516	3L_2390516_SNP [dm3] 3L_2390516_SNP [dm6]	T	C	3.411e^-4	0.903	SYNONYMOUS_CODING CG32298 UTR_5_PRIME CG32299 UPSTREAM CG32299 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_HSA
2R	9402592	2R_9402592_SNP [dm3] 2R_13515087_SNP [dm6]	G	A	3.411e^-4	0.903	UTR_3_PRIME Vmat UPSTREAM CG13330
3L	7706572	3L_7706572_SNP [dm3] 3L_7713472_SNP [dm6]	C	G	3.428e^-4	0.906	UTR_5_PRIME Ank2 INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5593391	2L_5593391_SNP [dm3] 2L_5593391_SNP [dm6]	T	C	3.435e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6157347	2R_6157347_SNP [dm3] 2R_10269842_SNP [dm6]	A	G	3.444e^-4	0.906	DOWNSTREAM CG12910 INTRON CAP
3L	3747212	3L_3747212_SNP [dm3] 3L_3747212_SNP [dm6]	T	C	3.447e^-4	0.906	UPSTREAM CG32264 INTRON CG32264
2L	14848507	2L_14848507_SNP [dm3] 2L_14848507_SNP [dm6]	A	T	3.448e^-4	0.906	INTRON CG15279
X	600473	X_600473_SNP [dm3] X_706440_SNP [dm6]	T	C	3.448e^-4	0.906	INTRON sdk
3L	16639576	3L_16639576_SNP [dm3] 3L_16646476_SNP [dm6]	A	G	3.474e^-4	0.906	INTRON Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7039808	2L_7039808_DEL [dm3] 2L_7039808_DEL [dm6]	GACAAA	G	3.474e^-4	0.906	INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5165291	3L_5165291_SNP [dm3] 3L_5172191_SNP [dm6]	C	T	3.477e^-4	0.906	INTRON shep
X	13985599	X_13985599_SNP [dm3] X_14091566_SNP [dm6]	A	G	3.481e^-4	0.906	INTERGENIC
3R	16264777	3R_16264777_SNP [dm3] 3R_20439055_SNP [dm6]	A	C	3.483e^-4	0.906	INTRON Gfrl
2R	20955398	2R_20955398_SNP [dm3] 2R_25067875_SNP [dm6]	A	T	3.484e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	563693	X_563693_SNP [dm3] X_669660_SNP [dm6]	C	T	3.493e^-4	0.906	INTERGENIC
2R	19525766	2R_19525766_INS [dm3] 2R_23638243_INS [dm6]	C	CGA	3.503e^-4	0.906	DOWNSTREAM CR45153 INTRON retn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	23430682	3R_23430682_SNP [dm3] 3R_27604960_SNP [dm6]	T	A	3.506e^-4	0.906	INTRON dsd	TF binding site mE1_TFBS_cad
X	3098330	X_3098330_DEL [dm3] X_3204297_DEL [dm6]	CAAATCGAA	C	3.508e^-4	0.906	INTRON dnc	TF binding site mE1_TFBS_inv
3L	10910269	3L_10910269_SNP [dm3] 3L_10917169_SNP [dm6]	A	C	3.512e^-4	0.906	INTERGENIC
3R	5477761	3R_5477761_DEL [dm3] 3R_9652039_DEL [dm6]	TCGATTCCAGGGAT...	T	3.516e^-4	0.906	SPLICE_SITE_REGION CG9492 DOWNSTREAM CG43441 INTRON CG9492	TF binding site BDTNP1_TFBS_da
2L	8771000	2L_8771000_SNP [dm3] 2L_8771000_SNP [dm6]	T	G	3.524e^-4	0.906	NON_SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
2R	6272318	2R_6272318_SNP [dm3] 2R_10384813_SNP [dm6]	T	C	3.532e^-4	0.906	INTRON CG42732
2L	7475812	2L_7475812_SNP [dm3] 2L_7475812_SNP [dm6]	C	T	3.534e^-4	0.906	SYNONYMOUS_CODING CG6441 INTRON Ziz
X	17648522	X_17648522_SNP [dm3] X_17754489_SNP [dm6]	T	C	3.535e^-4	0.906	INTERGENIC
3L	8827895	3L_8827895_SNP [dm3] 3L_8834795_SNP [dm6]	C	T	3.544e^-4	0.906	INTRON dally	TF binding site mE1_TFBS_inv
2L	9617252	2L_9617252_SNP [dm3] 2L_9617252_SNP [dm6]	C	T	3.552e^-4	0.906	UTR_5_PRIME GlcAT-S DOWNSTREAM Trx-2 INTRON GlcAT-S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22947634	3L_22947634_SNP [dm3] 3L_22954534_SNP [dm6]	A	C	3.555e^-4	0.906	STOP_GAINED CG32461
2R	6274247	2R_6274247_SNP [dm3] 2R_10386742_SNP [dm6]	A	C	3.555e^-4	0.906	INTRON CG42732
2L	20799489	2L_20799489_SNP [dm3] 2L_20799489_SNP [dm6]	G	T	3.557e^-4	0.906	INTRON CG9328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16999725	2R_16999725_SNP [dm3] 2R_21112220_SNP [dm6]	C	T	3.559e^-4	0.906	INTRON ktub
3L	8384640	3L_8384640_SNP [dm3] 3L_8391540_SNP [dm6]	C	T	3.571e^-4	0.906	UTR_5_PRIME Jon66Ci DOWNSTREAM ImpE1	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	9028305	2L_9028305_SNP [dm3] 2L_9028305_SNP [dm6]	G	T	3.578e^-4	0.906	INTRON CG9582 & 1 other
2L	4427491	2L_4427491_SNP [dm3] 2L_4427491_SNP [dm6]	T	C	3.584e^-4	0.906	INTRON CG15431
2R	12191994	2R_12191994_SNP [dm3] 2R_16304489_SNP [dm6]	T	C	3.589e^-4	0.906	EXON CR45232
2R	17279330	2R_17279330_SNP [dm3] 2R_21391825_SNP [dm6]	G	T	3.590e^-4	0.906	DOWNSTREAM Sdc INTRON Acox57D-d	TF binding site mE1_TFBS_cad
2L	19329981	2L_19329981_SNP [dm3] 2L_19329981_SNP [dm6]	T	A	3.592e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12804874	2R_12804874_SNP [dm3] 2R_16917369_SNP [dm6]	C	A	3.604e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	9261728	2R_9261728_SNP [dm3] 2R_13374223_SNP [dm6]	G	T	3.605e^-4	0.906	INTERGENIC
3L	14623372	3L_14623372_SNP [dm3] 3L_14630272_SNP [dm6]	A	C	3.611e^-4	0.906	UTR_3_PRIME RecQ5 INTRON RecQ5
2L	7985162	2L_7985162_SNP [dm3] 2L_7985162_SNP [dm6]	C	A	3.611e^-4	0.906	UPSTREAM Snoo & 1 other INTRON CG7231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20962091	2R_20962091_SNP [dm3] 2R_25074568_SNP [dm6]	C	G	3.618e^-4	0.906	UTR_3_PRIME gol INTRON gol
X	4347360	X_4347360_SNP [dm3] X_4453327_SNP [dm6]	A	G	3.619e^-4	0.906	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18883193	3R_18883193_SNP [dm3] 3R_23057471_SNP [dm6]	T	A	3.620e^-4	0.906	UTR_5_PRIME CG17119 INTRON CG17119	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11678393	3L_11678393_SNP [dm3] 3L_11685293_SNP [dm6]	C	A	3.630e^-4	0.907	INTRON Sug	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6860841	3L_6860841_SNP [dm3] 3L_6867741_SNP [dm6]	A	C	3.637e^-4	0.907	INTERGENIC
3L	13013924	3L_13013924_SNP [dm3] 3L_13020824_SNP [dm6]	G	A	3.638e^-4	0.907	SPLICE_SITE_REGION AdenoK SYNONYMOUS_CODING AdenoK
X	6337822	X_6337822_SNP [dm3] X_6443789_SNP [dm6]	A	T	3.657e^-4	0.908	INTRON CG42340
2R	15295455	2R_15295455_SNP [dm3] 2R_19407950_SNP [dm6]	T	A	3.659e^-4	0.908	DOWNSTREAM hts INTRON hts
2L	16630511	2L_16630511_SNP [dm3] 2L_16630511_SNP [dm6]	A	T	3.662e^-4	0.908	INTRON CG42389
2L	16630512	2L_16630512_SNP [dm3] 2L_16630512_SNP [dm6]	A	T	3.662e^-4	0.908	INTRON CG42389
3R	21738560	3R_21738560_SNP [dm3] 3R_25912838_SNP [dm6]	A	T	3.671e^-4	0.909	UTR_3_PRIME CG42235 INTRON CG42235
3L	13300510	3L_13300510_SNP [dm3] 3L_13307410_SNP [dm6]	T	C	3.682e^-4	0.909	INTERGENIC
3R	25689511	3R_25689511_SNP [dm3] 3R_29863789_SNP [dm6]	T	A	3.686e^-4	0.909	UTR_3_PRIME RpS8 & 1 other DOWNSTREAM snoRNA:Me28S-A2564 & 1 other
2R	21003841	2R_21003841_SNP [dm3] 2R_25116318_SNP [dm6]	A	G	3.689e^-4	0.909	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	15870819	X_15870819_SNP [dm3] X_15976786_SNP [dm6]	C	A	3.701e^-4	0.909	UPSTREAM CG42766 DOWNSTREAM Or13a INTERGENIC
3L	3858272	3L_3858272_SNP [dm3] 3L_3858272_SNP [dm6]	T	A	3.703e^-4	0.909	INTRON Awh	TF binding site mE1_TFBS_cad
3L	18944786	3L_18944786_SNP [dm3] 3L_18951686_SNP [dm6]	G	T	3.705e^-4	0.909	INTRON CG6836
3L	14121748	3L_14121748_SNP [dm3] 3L_14128648_SNP [dm6]	A	G	3.708e^-4	0.909	INTRON Sox21b	TF binding site mE1_TFBS_HSA
3R	10577339	3R_10577339_SNP [dm3] 3R_14751617_SNP [dm6]	C	T	3.712e^-4	0.909	UPSTREAM smp-30 DOWNSTREAM CG7362 INTRON jvl
X	17737054	X_17737054_SNP [dm3] X_17843021_SNP [dm6]	C	T	3.719e^-4	0.909	SYNONYMOUS_CODING e_y_1 DOWNSTREAM CG8142	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15266726	2R_15266726_SNP [dm3] 2R_19379221_SNP [dm6]	C	T	3.726e^-4	0.909	INTRON CG10062
2L	19252256	2L_19252256_SNP [dm3] 2L_19252256_SNP [dm6]	T	C	3.746e^-4	0.909	INTERGENIC
2L	15338826	2L_15338826_SNP [dm3] 2L_15338826_SNP [dm6]	G	T	3.747e^-4	0.909	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9476984	3L_9476984_SNP [dm3] 3L_9483884_SNP [dm6]	G	A	3.753e^-4	0.909	NON_SYNONYMOUS_CODING Jarid2
2R	18480866	2R_18480866_SNP [dm3] 2R_22593361_SNP [dm6]	G	T	3.760e^-4	0.909	UPSTREAM dnr1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9087037	2L_9087037_SNP [dm3] 2L_9087037_SNP [dm6]	T	C	3.761e^-4	0.909	SYNONYMOUS_CODING Toll-4
3L	14994518	3L_14994518_DEL [dm3] 3L_15001418_DEL [dm6]	AA	A	3.761e^-4	0.909	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
2L	5500910	2L_5500910_SNP [dm3] 2L_5500910_SNP [dm6]	A	G	3.765e^-4	0.909	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3423815	X_3423815_DEL [dm3] X_3529782_DEL [dm6]	TT	T	3.767e^-4	0.909	INTRON CG32791
2R	17250767	2R_17250767_SNP [dm3] 2R_21363262_SNP [dm6]	G	A	3.768e^-4	0.909	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2R	16500036	2R_16500036_SNP [dm3] 2R_20612531_SNP [dm6]	A	T	3.770e^-4	0.909	INTRON Hil
3L	5866662	3L_5866662_SNP [dm3] 3L_5873562_SNP [dm6]	A	G	3.771e^-4	0.909	UTR_5_PRIME CG18586 DOWNSTREAM CG5568
2R	10960782	2R_10960782_SNP [dm3] 2R_15073277_SNP [dm6]	A	T	3.783e^-4	0.911	INTERGENIC
2R	8673701	2R_8673701_SNP [dm3] 2R_12786196_SNP [dm6]	C	T	3.795e^-4	0.912	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14666321	3R_14666321_SNP [dm3] 3R_18840599_SNP [dm6]	G	A	3.800e^-4	0.912	INTRON CG18208
2R	21002207	2R_21002207_SNP [dm3] 2R_25114684_SNP [dm6]	G	T	3.802e^-4	0.912	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	5779984	3R_5779984_SNP [dm3] 3R_9954262_SNP [dm6]	T	A	3.831e^-4	0.914	UTR_3_PRIME Glut4EF INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
2L	19200129	2L_19200129_SNP [dm3] 2L_19200129_SNP [dm6]	A	G	3.839e^-4	0.914	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23005776	3L_23005776_SNP [dm3] 3L_23012676_SNP [dm6]	C	A	3.840e^-4	0.914	INTRON nrm
3L	13364763	3L_13364763_SNP [dm3] 3L_13371663_SNP [dm6]	C	T	3.851e^-4	0.914	INTERGENIC
3L	6994085	3L_6994085_SNP [dm3] 3L_7000985_SNP [dm6]	A	C	3.855e^-4	0.914	INTRON Mp
X	2403068	X_2403068_SNP [dm3] X_2509035_SNP [dm6]	C	T	3.861e^-4	0.914	INTRON trol
X	20643808	X_20643808_INS [dm3] X_20772781_INS [dm6]	T	AG	3.865e^-4	0.914	INTRON shakB
3L	8268129	3L_8268129_SNP [dm3] 3L_8275029_SNP [dm6]	G	T	3.867e^-4	0.914	INTRON Dscam4
2R	16824096	2R_16824096_SNP [dm3] 2R_20936591_SNP [dm6]	G	A	3.878e^-4	0.914	SYNONYMOUS_CODING Rx
3R	25206216	3R_25206216_SNP [dm3] 3R_29380494_SNP [dm6]	A	G	3.879e^-4	0.914	INTRON Ptp99A
X	16183040	X_16183040_SNP [dm3] X_16289007_SNP [dm6]	A	C	3.881e^-4	0.914	UPSTREAM CG32576 INTRON caz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	24702045	3R_24702045_SNP [dm3] 3R_28876323_SNP [dm6]	T	C	3.883e^-4	0.914	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20612142	X_20612142_INS [dm3] X_20741115_INS [dm6]	A	AGTA	3.884e^-4	0.914	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13309029	3L_13309029_SNP [dm3] 3L_13315929_SNP [dm6]	C	T	3.886e^-4	0.914	INTERGENIC
2L	7669293	2L_7669293_SNP [dm3] 2L_7669293_SNP [dm6]	A	G	3.888e^-4	0.914	INTRON Slob & 1 other
3R	13871870	3R_13871870_SNP [dm3] 3R_18046148_SNP [dm6]	T	C	3.894e^-4	0.914	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
2R	3579877	2R_3579877_SNP [dm3] 2R_7692372_SNP [dm6]	G	A	3.896e^-4	0.914	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25601589	3R_25601589_SNP [dm3] 3R_29775867_SNP [dm6]	C	T	3.898e^-4	0.914	INTRON kay	TF binding site BDTNP1_TFBS_z
3L	12857145	3L_12857145_SNP [dm3] 3L_12864045_SNP [dm6]	T	A	3.909e^-4	0.914	INTERGENIC
2R	8544957	2R_8544957_SNP [dm3] 2R_12657452_SNP [dm6]	A	G	3.911e^-4	0.914	SPLICE_SITE_REGION CG8646 INTRON CG8646
2R	11738192	2R_11738192_SNP [dm3] 2R_15850687_SNP [dm6]	C	T	3.919e^-4	0.914	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2R	21133389	2R_21133389_SNP [dm3] 2R_25245866_SNP [dm6]	T	G	3.926e^-4	0.914	UPSTREAM CG30429 INTRON CG9380
3R	3346793	3R_3346793_SNP [dm3] 3R_7521071_SNP [dm6]	A	G	3.927e^-4	0.914	SYNONYMOUS_CODING alpha-Est7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2041164	3L_2041164_SNP [dm3] 3L_2041164_SNP [dm6]	C	T	3.934e^-4	0.914	SYNONYMOUS_CODING sls
2R	21133387	2R_21133387_SNP [dm3] 2R_25245864_SNP [dm6]	A	T	3.937e^-4	0.914	UPSTREAM CG30429 INTRON CG9380
3L	7421971	3L_7421971_SNP [dm3] 3L_7428871_SNP [dm6]	A	T	3.940e^-4	0.914	INTRON CG42458
X	8686147	X_8686147_SNP [dm3] X_8792114_SNP [dm6]	C	T	3.946e^-4	0.914	INTRON Lim1
2L	8351562	2L_8351562_SNP [dm3] 2L_8351562_SNP [dm6]	T	A	3.948e^-4	0.914	UPSTREAM Mur29B DOWNSTREAM CG7778 INTERGENIC
2R	17282944	2R_17282944_SNP [dm3] 2R_21395439_SNP [dm6]	T	A	3.957e^-4	0.914	INTRON Sdc
2L	9736494	2L_9736494_SNP [dm3] 2L_9736494_SNP [dm6]	G	T	3.959e^-4	0.914	UPSTREAM CG13117 INTRON Nckx30C
3L	22949028	3L_22949028_SNP [dm3] 3L_22955928_SNP [dm6]	G	T	3.965e^-4	0.914	UPSTREAM CG32461 INTERGENIC
2L	10439363	2L_10439363_SNP [dm3] 2L_10439363_SNP [dm6]	C	G	3.967e^-4	0.914	UPSTREAM CG13142 DOWNSTREAM CHIP INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20809199	2L_20809199_INS [dm3] 2L_20809199_INS [dm6]	C	CCCGCAC	3.971e^-4	0.914	UPSTREAM CG9328 INTRON CG9328	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6177815	3L_6177815_SNP [dm3] 3L_6184715_SNP [dm6]	G	A	3.985e^-4	0.916	SYNONYMOUS_CODING D19B UPSTREAM CG43293	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
X	563628	X_563628_SNP [dm3] X_669595_SNP [dm6]	T	A	3.991e^-4	0.916	INTERGENIC
2R	6285159	2R_6285159_SNP [dm3] 2R_10397654_SNP [dm6]	A	T	3.995e^-4	0.916	INTRON CG42732
3R	5749460	3R_5749460_SNP [dm3] 3R_9923738_SNP [dm6]	C	T	4.004e^-4	0.916	INTRON Glut4EF
3R	13588162	3R_13588162_SNP [dm3] 3R_17762440_SNP [dm6]	G	A	4.009e^-4	0.916	UTR_5_PRIME TyrR
X	15870620	X_15870620_SNP [dm3] X_15976587_SNP [dm6]	T	A	4.010e^-4	0.916	UPSTREAM CG42766 INTRON Or13a
2R	11291119	2R_11291119_SNP [dm3] 2R_15403614_SNP [dm6]	G	A	4.017e^-4	0.916	INTRON CG43729
3L	6176447	3L_6176447_SNP [dm3] 3L_6183347_SNP [dm6]	G	A	4.018e^-4	0.916	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8403273	3L_8403273_SNP [dm3] 3L_8410173_SNP [dm6]	C	T	4.028e^-4	0.916	SYNONYMOUS_CODING Oseg1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10438482	2L_10438482_SNP [dm3] 2L_10438482_SNP [dm6]	C	G	4.029e^-4	0.916	UPSTREAM CG13142 INTRON CHIP
2L	4140305	2L_4140305_SNP [dm3] 2L_4140305_SNP [dm6]	C	T	4.051e^-4	0.917	INTERGENIC
3R	23359420	3R_23359420_SNP [dm3] 3R_27533698_SNP [dm6]	T	G	4.053e^-4	0.917	UTR_3_PRIME CG12885
X	17735922	X_17735922_SNP [dm3] X_17841889_SNP [dm6]	A	T	4.055e^-4	0.917	UPSTREAM e_y_1 DOWNSTREAM CG6398 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11142321	3L_11142321_SNP [dm3] 3L_11149221_SNP [dm6]	C	T	4.057e^-4	0.917	DOWNSTREAM CG6216 INTRON CG32082
2R	14587268	2R_14587268_SNP [dm3] 2R_18699763_SNP [dm6]	T	C	4.063e^-4	0.917	SYNONYMOUS_CODING Sik3
X	633653	X_633653_SNP [dm3] X_739620_SNP [dm6]	G	A	4.066e^-4	0.917	INTRON sdk
2L	4055435	2L_4055435_INS [dm3] 2L_4055435_INS [dm6]	T	TT	4.088e^-4	0.918	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19187066	2R_19187066_SNP [dm3] 2R_23299543_SNP [dm6]	T	A	4.093e^-4	0.918	INTERGENIC
2L	9068205	2L_9068205_SNP [dm3] 2L_9068205_SNP [dm6]	A	T	4.095e^-4	0.918	INTRON CG31708
2R	8673691	2R_8673691_SNP [dm3] 2R_12786186_SNP [dm6]	T	A	4.097e^-4	0.918	INTRON sca EXON CR45137	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5531337	3L_5531337_SNP [dm3] 3L_5538237_SNP [dm6]	C	T	4.107e^-4	0.918	DOWNSTREAM CG10625 INTERGENIC
3L	11290555	3L_11290555_DEL [dm3] 3L_11297455_DEL [dm6]	CTT	C	4.114e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_Trl
X	3593049	X_3593049_SNP [dm3] X_3699016_SNP [dm6]	C	T	4.126e^-4	0.918	SYNONYMOUS_CODING Mnt
2R	10960784	2R_10960784_SNP [dm3] 2R_15073279_SNP [dm6]	T	C	4.131e^-4	0.918	INTERGENIC
3R	12593271	3R_12593271_SNP [dm3] 3R_16767549_SNP [dm6]	A	G	4.133e^-4	0.918	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	12593328	3R_12593328_SNP [dm3] 3R_16767606_SNP [dm6]	C	A	4.133e^-4	0.918	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	12601800	3L_12601800_SNP [dm3] 3L_12608700_SNP [dm6]	T	A	4.133e^-4	0.918	UPSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8578064	2R_8578064_SNP [dm3] 2R_12690559_SNP [dm6]	T	G	4.138e^-4	0.918	UPSTREAM CG30053 DOWNSTREAM CG8768 INTRON Obp49a
3R	15545500	3R_15545500_SNP [dm3] 3R_19719778_SNP [dm6]	A	T	4.144e^-4	0.918	INTERGENIC
3R	9948053	3R_9948053_SNP [dm3] 3R_14122331_SNP [dm6]	T	C	4.148e^-4	0.918	UTR_5_PRIME Abi UPSTREAM twf & 1 other INTRON Abi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	604271	X_604271_SNP [dm3] X_710238_SNP [dm6]	C	G	4.154e^-4	0.918	INTRON sdk	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8810398	2L_8810398_SNP [dm3] 2L_8810398_SNP [dm6]	T	C	4.154e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6132469	3L_6132469_SNP [dm3] 3L_6139369_SNP [dm6]	T	C	4.154e^-4	0.918	UTR_3_PRIME Cpr65Av
2L	19512040	2L_19512040_SNP [dm3] 2L_19512040_SNP [dm6]	G	T	4.157e^-4	0.918	SYNONYMOUS_CODING CG10186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7093638	2L_7093638_SNP [dm3] 2L_7093638_SNP [dm6]	A	C	4.160e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	10533643	3R_10533643_SNP [dm3] 3R_14707921_SNP [dm6]	G	A	4.166e^-4	0.918	INTRON kibra
2L	8626603	2L_8626603_SNP [dm3] 2L_8626603_SNP [dm6]	G	C	4.199e^-4	0.923	INTRON Sema-1a
X	11708503	X_11708503_INS [dm3] X_11814470_INS [dm6]	T	TTCTTGCAGAAGAGC...	4.206e^-4	0.923	INTRON CG1578
2L	16364591	2L_16364591_SNP [dm3] 2L_16364591_SNP [dm6]	T	G	4.206e^-4	0.923	INTERGENIC	regulatory region REDfly_CRMs
2R	1567648	2R_1567648_SNP [dm3] 2R_5680143_SNP [dm6]	C	T	4.206e^-4	0.923	SYNONYMOUS_CODING scaf	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	7640137	X_7640137_SNP [dm3] X_7746104_SNP [dm6]	T	G	4.213e^-4	0.923	INTERGENIC
3R	4921116	3R_4921116_SNP [dm3] 3R_9095394_SNP [dm6]	C	T	4.232e^-4	0.926	INTRON pum
2R	10961032	2R_10961032_SNP [dm3] 2R_15073527_SNP [dm6]	G	A	4.257e^-4	0.927	INTERGENIC
2R	19195635	2R_19195635_SNP [dm3] 2R_23308112_SNP [dm6]	G	A	4.260e^-4	0.927	DOWNSTREAM Prosbeta5R1 INTERGENIC
2R	21007886	2R_21007886_SNP [dm3] 2R_25120363_SNP [dm6]	T	G	4.268e^-4	0.927	INTRON lov	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	20392169	X_20392169_SNP [dm3] X_20521142_SNP [dm6]	A	G	4.271e^-4	0.927	INTRON Tak1
3R	10434139	3R_10434139_SNP [dm3] 3R_14608417_SNP [dm6]	A	T	4.272e^-4	0.927	DOWNSTREAM stumps INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9664899	2R_9664899_DEL [dm3] 2R_13777394_DEL [dm6]	GT	G	4.284e^-4	0.927	DOWNSTREAM S-Lap7 INTRON Cpr50Ca
2L	1270976	2L_1270976_SNP [dm3] 2L_1270976_SNP [dm6]	C	G	4.291e^-4	0.927	INTRON robo3
2L	20808187	2L_20808187_SNP [dm3] 2L_20808187_SNP [dm6]	C	A	4.297e^-4	0.927	INTRON CG9328
2R	1078001	2R_1078001_SNP [dm3] 2R_5190496_SNP [dm6]	T	A	4.301e^-4	0.927	INTRON Nipped-A	transposable element FlyBase
X	11714539	X_11714539_SNP [dm3] X_11820506_SNP [dm6]	T	A	4.312e^-4	0.927	INTRON rudhira	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5763522	3R_5763522_SNP [dm3] 3R_9937800_SNP [dm6]	C	G	4.317e^-4	0.927	INTRON Glut4EF	TF binding site mE1_TFBS_cad
X	558747	X_558747_SNP [dm3] X_664714_SNP [dm6]	T	C	4.320e^-4	0.927	INTERGENIC
X	559601	X_559601_SNP [dm3] X_665568_SNP [dm6]	C	T	4.320e^-4	0.927	INTERGENIC	transposable element FlyBase
2L	8351575	2L_8351575_SNP [dm3] 2L_8351575_SNP [dm6]	G	T	4.321e^-4	0.927	UPSTREAM Mur29B DOWNSTREAM CG7778 INTERGENIC
2L	14848509	2L_14848509_INS [dm3] 2L_14848509_INS [dm6]	A	ATATTTAAC	4.330e^-4	0.927	INTRON CG15279
2R	19951861	2R_19951861_SNP [dm3] 2R_24064338_SNP [dm6]	C	T	4.335e^-4	0.927	UPSTREAM Rap2l INTRON Rap2l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3576425	3L_3576425_INS [dm3] 3L_3576425_INS [dm6]	G	AAA	4.341e^-4	0.927	INTRON Eip63E
3R	12594484	3R_12594484_SNP [dm3] 3R_16768762_SNP [dm6]	T	G	4.345e^-4	0.927	INTRON bxd	TF binding site mE1_TFBS_Ubx
3R	14664167	3R_14664167_SNP [dm3] 3R_18838445_SNP [dm6]	A	G	4.346e^-4	0.927	INTRON CG18208
3R	12593268	3R_12593268_SNP [dm3] 3R_16767546_SNP [dm6]	A	G	4.355e^-4	0.927	INTRON bxd	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	7292825	2R_7292825_SNP [dm3] 2R_11405320_SNP [dm6]	T	C	4.357e^-4	0.927	UPSTREAM CG7759 & 1 other DOWNSTREAM tRNA:CR45106 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12594465	3R_12594465_SNP [dm3] 3R_16768743_SNP [dm6]	T	A	4.358e^-4	0.927	INTRON bxd	TF binding site mE1_TFBS_Ubx
3L	1257762	3L_1257762_SNP [dm3] 3L_1257762_SNP [dm6]	A	T	4.358e^-4	0.927	INTRON CG9134
2R	8151199	2R_8151199_SNP [dm3] 2R_12263694_SNP [dm6]	G	C	4.359e^-4	0.927	UPSTREAM Cam INTRON Cam
3L	15968539	3L_15968539_SNP [dm3] 3L_15975439_SNP [dm6]	A	G	4.375e^-4	0.927	UTR_5_PRIME CG17026 INTRON brm
2L	8820342	2L_8820342_SNP [dm3] 2L_8820342_SNP [dm6]	C	T	4.377e^-4	0.927	INTERGENIC
2R	17708814	2R_17708814_SNP [dm3] 2R_21821309_SNP [dm6]	G	T	4.381e^-4	0.927	SYNONYMOUS_CODING CG13492	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1041811	2R_1041811_SNP [dm3] 2R_5154306_SNP [dm6]	C	T	4.382e^-4	0.927	UTR_3_PRIME Atf6 DOWNSTREAM Atf6	transposable element FlyBase
X	13726916	X_13726916_SNP [dm3] X_13832883_SNP [dm6]	A	C	4.389e^-4	0.927	INTRON AMPdeam
X	8262486	X_8262486_SNP [dm3] X_8368453_SNP [dm6]	C	T	4.395e^-4	0.927	INTERGENIC
3R	25795307	3R_25795307_INS [dm3] 3R_29969585_INS [dm6]	T	TGGGT	4.404e^-4	0.927	UPSTREAM TkR99D INTERGENIC
2R	12982733	2R_12982733_SNP [dm3] 2R_17095228_SNP [dm6]	T	A	4.414e^-4	0.927	INTRON GstS1	TF binding site mE1_TFBS_cad
2L	17300498	2L_17300498_DEL [dm3] 2L_17300498_DEL [dm6]	TT	T	4.419e^-4	0.927	INTERGENIC
2L	15972943	2L_15972943_INS [dm3] 2L_15972943_INS [dm6]	A	ACACTA	4.422e^-4	0.927	INTERGENIC
X	17648521	X_17648521_SNP [dm3] X_17754488_SNP [dm6]	A	T	4.424e^-4	0.927	INTERGENIC
3R	23232564	3R_23232564_SNP [dm3] 3R_27406842_SNP [dm6]	G	A	4.425e^-4	0.927	INTRON side	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12641997	3L_12641997_SNP [dm3] 3L_12648897_SNP [dm6]	A	C	4.430e^-4	0.927	DOWNSTREAM CR43431 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26164876	3R_26164876_SNP [dm3] 3R_30339154_SNP [dm6]	T	C	4.433e^-4	0.927	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10034526	3L_10034526_INS [dm3] 3L_10041426_INS [dm6]	T	TGAAG	4.436e^-4	0.927	DOWNSTREAM dpr6 INTRON dpr6
3R	24840779	3R_24840779_SNP [dm3] 3R_29015057_SNP [dm6]	A	T	4.437e^-4	0.927	INTRON wat
3L	3537153	3L_3537153_SNP [dm3] 3L_3537153_SNP [dm6]	A	G	4.441e^-4	0.927	INTRON Eip63E
3R	17380812	3R_17380812_SNP [dm3] 3R_21555090_SNP [dm6]	T	C	4.450e^-4	0.928	INTRON slou
2R	9259680	2R_9259680_SNP [dm3] 2R_13372175_SNP [dm6]	G	A	4.459e^-4	0.929	INTERGENIC
3L	12393600	3L_12393600_SNP [dm3] 3L_12400500_SNP [dm6]	G	A	4.466e^-4	0.93	SYNONYMOUS_CODING Smyd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6270282	2R_6270282_SNP [dm3] 2R_10382777_SNP [dm6]	G	A	4.475e^-4	0.93	INTRON CG42732
2R	19841148	2R_19841148_SNP [dm3] 2R_23953625_SNP [dm6]	T	A	4.485e^-4	0.931	UPSTREAM thoc5 INTRON CG3803	TF binding site BDTNP1_TFBS_dl
2R	21131282	2R_21131282_SNP [dm3] 2R_25243759_SNP [dm6]	C	A	4.491e^-4	0.931	UTR_5_PRIME CG9380	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	20002716	2R_20002716_SNP [dm3] 2R_24115193_SNP [dm6]	C	T	4.492e^-4	0.931	SYNONYMOUS_CODING CG3253 UPSTREAM CG4049	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23260369	3R_23260369_SNP [dm3] 3R_27434647_SNP [dm6]	C	A	4.501e^-4	0.932	INTRON side	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25844126	3R_25844126_SNP [dm3] 3R_30018404_SNP [dm6]	C	T	4.507e^-4	0.932	SYNONYMOUS_CODING Mgat2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4987602	2R_4987602_SNP [dm3] 2R_9100097_SNP [dm6]	C	G	4.515e^-4	0.932	SYNONYMOUS_CODING CG8777	TF binding site mE1_TFBS_cad
3R	9868099	3R_9868099_SNP [dm3] 3R_14042377_SNP [dm6]	G	C	4.519e^-4	0.932	INTERGENIC
2R	4936907	2R_4936907_SNP [dm3] 2R_9049402_SNP [dm6]	T	G	4.530e^-4	0.932	INTRON CG13743
3L	7394247	3L_7394247_SNP [dm3] 3L_7401147_SNP [dm6]	A	G	4.532e^-4	0.932	INTRON CG18417
3L	8163892	3L_8163892_SNP [dm3] 3L_8170792_SNP [dm6]	T	C	4.539e^-4	0.932	UTR_3_PRIME RecQ4
3R	13611756	3R_13611756_SNP [dm3] 3R_17786034_SNP [dm6]	C	T	4.541e^-4	0.932	INTRON CG43102
2R	21133397	2R_21133397_INS [dm3] 2R_25245874_INS [dm6]	C	CG	4.545e^-4	0.932	UPSTREAM CG30429 INTRON CG9380
2L	16364623	2L_16364623_SNP [dm3] 2L_16364623_SNP [dm6]	C	T	4.556e^-4	0.934	INTERGENIC	regulatory region REDfly_CRMs
2R	9733548	2R_9733548_SNP [dm3] 2R_13846043_SNP [dm6]	T	G	4.560e^-4	0.934	UTR_5_PRIME Syngr UPSTREAM CG30484	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8474207	3R_8474207_SNP [dm3] 3R_12648485_SNP [dm6]	G	A	4.576e^-4	0.934	INTRON Dtg	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	559811	X_559811_SNP [dm3] X_665778_SNP [dm6]	C	G	4.579e^-4	0.934	INTERGENIC
2R	21050134	2R_21050134_DEL [dm3] 2R_25162611_DEL [dm6]	CGCAA	T	4.581e^-4	0.934	INTERGENIC
2L	10438541	2L_10438541_SNP [dm3] 2L_10438541_SNP [dm6]	T	C	4.584e^-4	0.934	UPSTREAM CG13142 INTRON CHIP
2R	8579130	2R_8579130_SNP [dm3] 2R_12691625_SNP [dm6]	G	T	4.590e^-4	0.934	SYNONYMOUS_CODING CG8768 UPSTREAM Obp49a
2R	4988381	2R_4988381_SNP [dm3] 2R_9100876_SNP [dm6]	T	G	4.591e^-4	0.934	INTRON CG8777	TF binding site mE1_TFBS_cad
3R	4901572	3R_4901572_SNP [dm3] 3R_9075850_SNP [dm6]	C	T	4.603e^-4	0.935	INTRON pum
X	558742	X_558742_SNP [dm3] X_664709_SNP [dm6]	C	A	4.614e^-4	0.936	INTERGENIC
2L	2311744	2L_2311744_SNP [dm3] 2L_2311744_SNP [dm6]	C	T	4.629e^-4	0.938	UTR_5_PRIME eys INTRON CG9967	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	20799615	2L_20799615_SNP [dm3] 2L_20799615_SNP [dm6]	A	C	4.631e^-4	0.938	INTRON CG9328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24702315	3R_24702315_SNP [dm3] 3R_28876593_SNP [dm6]	A	G	4.643e^-4	0.939	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo
3L	789955	3L_789955_SNP [dm3] 3L_789955_SNP [dm6]	T	A	4.646e^-4	0.939	INTERGENIC
X	16183031	X_16183031_INS [dm3] X_16288998_INS [dm6]	T	TACAT	4.662e^-4	0.941	UPSTREAM CG32576 INTRON caz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	12601792	3L_12601792_SNP [dm3] 3L_12608692_SNP [dm6]	A	C	4.676e^-4	0.941	UPSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	559271	X_559271_SNP [dm3] X_665238_SNP [dm6]	A	T	4.688e^-4	0.941	INTERGENIC
3L	16639348	3L_16639348_SNP [dm3] 3L_16646248_SNP [dm6]	G	A	4.689e^-4	0.941	INTRON Abl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6275499	2R_6275499_SNP [dm3] 2R_10387994_SNP [dm6]	T	A	4.694e^-4	0.941	INTRON CG42732
2R	4984490	2R_4984490_SNP [dm3] 2R_9096985_SNP [dm6]	T	C	4.738e^-4	0.941	UTR_3_PRIME CG8078 UPSTREAM snoRNA:Or-CD2 DOWNSTREAM snoRNA:Me28S-G3255a & 3 others EXON Uhg4
3R	18730819	3R_18730819_SNP [dm3] 3R_22905097_SNP [dm6]	G	A	4.738e^-4	0.941	INTRON klg
2R	8578914	2R_8578914_SNP [dm3] 2R_12691409_SNP [dm6]	A	C	4.747e^-4	0.941	UTR_3_PRIME CG8768 UPSTREAM Obp49a
3R	14817989	3R_14817989_INS [dm3] 3R_18992267_INS [dm6]	T	TGT	4.749e^-4	0.941	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	7165770	2L_7165770_DEL [dm3] 2L_7165770_DEL [dm6]	AA	A	4.750e^-4	0.941	INTERGENIC
2R	19194720	2R_19194720_SNP [dm3] 2R_23307197_SNP [dm6]	T	C	4.754e^-4	0.941	INTERGENIC
3L	12894180	3L_12894180_SNP [dm3] 3L_12901080_SNP [dm6]	A	T	4.758e^-4	0.941	DOWNSTREAM CG12520 INTERGENIC
2R	11291173	2R_11291173_SNP [dm3] 2R_15403668_SNP [dm6]	T	C	4.768e^-4	0.941	INTRON CG43729
2L	4140344	2L_4140344_SNP [dm3] 2L_4140344_SNP [dm6]	G	A	4.773e^-4	0.941	INTERGENIC
2R	12982654	2R_12982654_INS [dm3] 2R_17095149_INS [dm6]	G	GCGTA	4.775e^-4	0.941	INTRON GstS1	TF binding site mE1_TFBS_cad
2R	19202807	2R_19202807_SNP [dm3] 2R_23315284_SNP [dm6]	G	T	4.788e^-4	0.941	INTERGENIC
3R	10435265	3R_10435265_SNP [dm3] 3R_14609543_SNP [dm6]	T	C	4.795e^-4	0.941	UPSTREAM CG14853 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20949863	X_20949863_DEL [dm3] X_21078836_DEL [dm6]	TCCACT	C	4.802e^-4	0.941	UTR_3_PRIME bves INTRON bves
2L	20803208	2L_20803208_SNP [dm3] 2L_20803208_SNP [dm6]	G	A	4.809e^-4	0.941	INTRON CG9328
3R	3543732	3R_3543732_SNP [dm3] 3R_7718010_SNP [dm6]	A	C	4.815e^-4	0.941	INTERGENIC
3R	8481700	3R_8481700_SNP [dm3] 3R_12655978_SNP [dm6]	C	G	4.817e^-4	0.941	INTRON CG6225
X	11715460	X_11715460_DEL [dm3] X_11821427_DEL [dm6]	TCATT	T	4.818e^-4	0.941	INTRON rudhira	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10014978	3L_10014978_SNP [dm3] 3L_10021878_SNP [dm6]	G	A	4.838e^-4	0.941	INTRON dpr6
2R	8578930	2R_8578930_SNP [dm3] 2R_12691425_SNP [dm6]	A	G	4.840e^-4	0.941	UTR_3_PRIME CG8768 UPSTREAM Obp49a
2R	11291124	2R_11291124_SNP [dm3] 2R_15403619_SNP [dm6]	A	T	4.860e^-4	0.941	INTRON CG43729
2R	7460567	2R_7460567_SNP [dm3] 2R_11573062_SNP [dm6]	T	A	4.862e^-4	0.941	INTERGENIC
3L	8838454	3L_8838454_SNP [dm3] 3L_8845354_SNP [dm6]	C	T	4.875e^-4	0.941	INTRON dally
2L	14359574	2L_14359574_SNP [dm3] 2L_14359574_SNP [dm6]	A	T	4.879e^-4	0.941	SYNONYMOUS_CODING Pgant35A DOWNSTREAM Rab14 EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7093643	2L_7093643_SNP [dm3] 2L_7093643_SNP [dm6]	A	T	4.889e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	4030175	3L_4030175_SNP [dm3] 3L_4030175_SNP [dm6]	C	T	4.890e^-4	0.941	SYNONYMOUS_CODING Gr64b START_GAINED Gr64c UTR_5_PRIME Gr64c UPSTREAM Gr64c	TF binding site mE1_TFBS_cad
3L	12358616	3L_12358616_SNP [dm3] 3L_12365516_SNP [dm6]	A	G	4.893e^-4	0.941	INTERGENIC
2R	565157	2R_565157_SNP [dm3] 2R_4677652_SNP [dm6]	C	T	4.900e^-4	0.941	INTERGENIC	transposable element FlyBase
3L	6173637	3L_6173637_SNP [dm3] 3L_6180537_SNP [dm6]	A	G	4.904e^-4	0.941	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	574742	X_574742_SNP [dm3] X_680709_SNP [dm6]	T	C	4.906e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17571204	X_17571204_SNP [dm3] X_17677171_SNP [dm6]	G	A	4.910e^-4	0.941	SYNONYMOUS_CODING chas UTR_5_PRIME chas	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13004428	2R_13004428_DEL [dm3] 2R_17116923_DEL [dm6]	AGAGTTCCAGGA...	A	4.913e^-4	0.941	INTERGENIC
2R	4983370	2R_4983370_INS [dm3] 2R_9095865_INS [dm6]	G	GTG	4.914e^-4	0.941	UPSTREAM snoRNA:Me28S-G3255a & 3 others DOWNSTREAM snoRNA:Psi28S-2949 & 1 other INTRON Uhg4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	11312140	2L_11312140_INS [dm3] 2L_11312140_INS [dm6]	A	AAATCAAT	4.921e^-4	0.941	INTERGENIC
2R	21058215	2R_21058215_SNP [dm3] 2R_25170692_SNP [dm6]	G	A	4.924e^-4	0.941	DOWNSTREAM CG34038 INTERGENIC
2L	2315366	2L_2315366_SNP [dm3] 2L_2315366_SNP [dm6]	T	A	4.927e^-4	0.941	INTRON CG9967 & 1 other
3R	25850653	3R_25850653_SNP [dm3] 3R_30024931_SNP [dm6]	A	G	4.932e^-4	0.941	INTRON Axn
X	8041396	X_8041396_SNP [dm3] X_8147363_SNP [dm6]	G	T	4.933e^-4	0.941	UTR_3_PRIME CG2129 UPSTREAM CG15336	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12085259	3L_12085259_DEL [dm3] 3L_12092159_DEL [dm6]	CCGAGC	C	4.940e^-4	0.941	INTERGENIC
3L	4686408	3L_4686408_SNP [dm3] 3L_4686408_SNP [dm6]	C	T	4.955e^-4	0.941	INTRON axo
3L	11456254	3L_11456254_SNP [dm3] 3L_11463154_SNP [dm6]	C	T	4.956e^-4	0.941	DOWNSTREAM CG6140 INTERGENIC
3L	11523822	3L_11523822_SNP [dm3] 3L_11530722_SNP [dm6]	A	G	4.963e^-4	0.941	INTRON Mob2
3L	6177950	3L_6177950_SNP [dm3] 3L_6184850_SNP [dm6]	G	T	4.973e^-4	0.941	UTR_5_PRIME D19B UPSTREAM CG43293 DOWNSTREAM D19A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
2R	14587346	2R_14587346_SNP [dm3] 2R_18699841_SNP [dm6]	G	A	4.991e^-4	0.941	SYNONYMOUS_CODING Sik3
2R	15196394	2R_15196394_SNP [dm3] 2R_19308889_SNP [dm6]	G	A	4.991e^-4	0.941	INTRON EndoB
2R	15695644	2R_15695644_SNP [dm3] 2R_19808139_SNP [dm6]	G	T	5.000e^-4	0.941	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14974951	2L_14974951_SNP [dm3] 2L_14974951_SNP [dm6]	T	A	5.005e^-4	0.941	DOWNSTREAM mol EXON CR45331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12079359	2L_12079359_SNP [dm3] 2L_12079359_SNP [dm6]	T	C	5.005e^-4	0.941	UPSTREAM CR44591 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	7165670	2L_7165670_SNP [dm3] 2L_7165670_SNP [dm6]	T	G	5.008e^-4	0.941	INTERGENIC
2L	1034396	2L_1034396_SNP [dm3] 2L_1034396_SNP [dm6]	A	T	5.012e^-4	0.941	INTRON IA-2
2R	4466479	2R_4466479_SNP [dm3] 2R_8578974_SNP [dm6]	G	A	5.014e^-4	0.941	UPSTREAM CG42326 INTRON CG42326
3L	14993536	3L_14993536_INS [dm3] 3L_15000436_INS [dm6]	A	AAAA	5.033e^-4	0.941	UPSTREAM mRpL39 DOWNSTREAM Reck INTRON Prosbeta2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	17735872	X_17735872_SNP [dm3] X_17841839_SNP [dm6]	A	G	5.036e^-4	0.941	UPSTREAM e_y_1 DOWNSTREAM CG6398 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13767615	2R_13767615_SNP [dm3] 2R_17880110_SNP [dm6]	G	A	5.039e^-4	0.941	UPSTREAM CG30325 DOWNSTREAM CG30110 INTRON Elk
2R	8578063	2R_8578063_SNP [dm3] 2R_12690558_SNP [dm6]	T	G	5.052e^-4	0.941	UPSTREAM CG30053 DOWNSTREAM CG8768 INTRON Obp49a
3L	8050275	3L_8050275_SNP [dm3] 3L_8057175_SNP [dm6]	T	C	5.066e^-4	0.941	UPSTREAM bip1 INTRON bip1	TF binding site mE1_TFBS_Trl
2R	20996353	2R_20996353_SNP [dm3] 2R_25108830_SNP [dm6]	T	A	5.070e^-4	0.941	INTRON lov	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8544912	2R_8544912_SNP [dm3] 2R_12657407_SNP [dm6]	A	C	5.071e^-4	0.941	INTRON CG8646
3L	3971057	3L_3971057_INS [dm3] 3L_3971057_INS [dm6]	A	ACATATGTATGTA...	5.074e^-4	0.941	INTERGENIC
3R	24801492	3R_24801492_SNP [dm3] 3R_28975770_SNP [dm6]	T	C	5.075e^-4	0.941	INTERGENIC
X	573745	X_573745_SNP [dm3] X_679712_SNP [dm6]	G	T	5.078e^-4	0.941	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	21743673	3R_21743673_SNP [dm3] 3R_25917951_SNP [dm6]	T	A	5.079e^-4	0.941	DOWNSTREAM CG42235 INTRON CG42235
X	8867574	X_8867574_SNP [dm3] X_8973541_SNP [dm6]	C	G	5.087e^-4	0.941	INTRON rdgA & 2 others
2L	8772239	2L_8772239_SNP [dm3] 2L_8772239_SNP [dm6]	A	G	5.098e^-4	0.941	DOWNSTREAM CG9466 INTRON CG9465
2R	9905552	2R_9905552_SNP [dm3] 2R_14018047_SNP [dm6]	G	T	5.102e^-4	0.941	INTRON mam
2R	13988044	2R_13988044_SNP [dm3] 2R_18100539_SNP [dm6]	G	A	5.103e^-4	0.941	UTR_3_PRIME CG5098 DOWNSTREAM CG5756
3R	18260426	3R_18260426_INS [dm3] 3R_22434704_INS [dm6]	A	AGA	5.116e^-4	0.941	INTRON CG13847
2R	12273824	2R_12273824_SNP [dm3] 2R_16386319_SNP [dm6]	T	C	5.116e^-4	0.941	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.977e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01211

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.3406	0.0692
In_3R_K	8.1174	0.0173

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1431 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	7422298	3L_7422298_SNP [dm3] 3L_7429198_SNP [dm6]	T	A	8.018e^-8	0.15	INTRON CG42458
3R	24077775	3R_24077775_SNP [dm3] 3R_28252053_SNP [dm6]	C	A	2.406e^-6	1	INTERGENIC
2L	11795059	2L_11795059_DEL [dm3] 2L_11795059_DEL [dm6]	TCA	T	2.979e^-6	1	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
2R	6438417	2R_6438417_SNP [dm3] 2R_10550912_SNP [dm6]	A	C	3.586e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13004428	2R_13004428_DEL [dm3] 2R_17116923_DEL [dm6]	AGAGTTCCAGGA...	A	4.375e^-6	1	INTERGENIC
3L	20968891	3L_20968891_SNP [dm3] 3L_20975791_SNP [dm6]	A	T	4.442e^-6	1	INTERGENIC
2R	12967989	2R_12967989_SNP [dm3] 2R_17080484_SNP [dm6]	C	A	6.430e^-6	1	INTRON CG30460
X	973198	X_973198_SNP [dm3] X_1079165_SNP [dm6]	A	G	8.599e^-6	1	INTRON CR44779 & 1 other
2L	11795065	2L_11795065_SNP [dm3] 2L_11795065_SNP [dm6]	T	A	9.323e^-6	1	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
3L	10602448	3L_10602448_SNP [dm3] 3L_10609348_SNP [dm6]	C	A	1.046e^-5	1	INTERGENIC
2R	11291173	2R_11291173_SNP [dm3] 2R_15403668_SNP [dm6]	T	C	1.258e^-5	1	INTRON CG43729
3L	3762134	3L_3762134_SNP [dm3] 3L_3762134_SNP [dm6]	G	T	1.260e^-5	1	INTRON CG32264
2L	19840176	2L_19840176_SNP [dm3] 2L_19840176_SNP [dm6]	T	G	1.367e^-5	1	INTRON sick
3R	5817016	3R_5817016_INS [dm3] 3R_9991294_INS [dm6]	T	TGCT	1.584e^-5	1	UTR_3_PRIME Glut4EF
3R	5739963	3R_5739963_SNP [dm3] 3R_9914241_SNP [dm6]	T	A	1.598e^-5	1	INTRON Glut4EF
3L	8169426	3L_8169426_SNP [dm3] 3L_8176326_SNP [dm6]	A	C	1.719e^-5	1	UTR_3_PRIME Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	18441694	2R_18441694_SNP [dm3] 2R_22554189_SNP [dm6]	G	A	1.769e^-5	1	INTRON px
3L	10142941	3L_10142941_SNP [dm3] 3L_10149841_SNP [dm6]	G	A	1.920e^-5	1	INTRON dpr10
3L	9138631	3L_9138631_SNP [dm3] 3L_9145531_SNP [dm6]	A	G	1.934e^-5	1	UTR_3_PRIME nwk DOWNSTREAM mir-4940 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	4998405	3L_4998405_SNP [dm3] 3L_4998405_SNP [dm6]	T	C	1.946e^-5	1	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25018695	3R_25018695_SNP [dm3] 3R_29192973_SNP [dm6]	C	A	2.038e^-5	1	INTRON CG14509
3R	24702315	3R_24702315_SNP [dm3] 3R_28876593_SNP [dm6]	A	G	2.131e^-5	1	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo
3R	22659957	3R_22659957_DEL [dm3] 3R_26834235_DEL [dm6]	AA	A	2.154e^-5	1	INTRON Tl	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	11285594	2R_11285594_SNP [dm3] 2R_15398089_SNP [dm6]	G	A	2.166e^-5	1	INTERGENIC
2L	19884624	2L_19884624_SNP [dm3] 2L_19884624_SNP [dm6]	G	T	2.308e^-5	1	INTRON sick
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	2.315e^-5	1	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
2L	3886000	2L_3886000_SNP [dm3] 2L_3886000_SNP [dm6]	G	T	2.390e^-5	1	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24701442	3R_24701442_SNP [dm3] 3R_28875720_SNP [dm6]	T	G	2.394e^-5	1	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18856248	3R_18856248_SNP [dm3] 3R_23030526_SNP [dm6]	C	T	2.517e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13480511	2L_13480511_SNP [dm3] 2L_13480511_SNP [dm6]	C	T	2.519e^-5	1	INTRON CG42784
2L	13100947	2L_13100947_DEL [dm3] 2L_13100947_DEL [dm6]	TT	T	2.527e^-5	1	INTERGENIC
2L	4770897	2L_4770897_SNP [dm3] 2L_4770897_SNP [dm6]	G	C	2.562e^-5	1	INTRON CG15630
2L	9186332	2L_9186332_SNP [dm3] 2L_9186332_SNP [dm6]	T	G	2.605e^-5	1	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6895478	2R_6895478_SNP [dm3] 2R_11007973_SNP [dm6]	C	T	2.643e^-5	1	INTRON luna
2L	19263912	2L_19263912_SNP [dm3] 2L_19263912_SNP [dm6]	A	T	2.652e^-5	1	DOWNSTREAM CR44191 INTERGENIC
2R	15943699	2R_15943699_SNP [dm3] 2R_20056194_SNP [dm6]	A	T	2.747e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5817008	3R_5817008_DEL [dm3] 3R_9991286_DEL [dm6]	ACCTTG	A	2.808e^-5	1	UTR_3_PRIME Glut4EF
2R	12967998	2R_12967998_SNP [dm3] 2R_17080493_SNP [dm6]	C	A	2.984e^-5	1	INTRON CG30460
3R	14655676	3R_14655676_SNP [dm3] 3R_18829954_SNP [dm6]	G	A	3.060e^-5	1	INTRON CG18208
3L	3750099	3L_3750099_SNP [dm3] 3L_3750099_SNP [dm6]	T	C	3.157e^-5	1	INTRON CG32264
2L	13603445	2L_13603445_SNP [dm3] 2L_13603445_SNP [dm6]	G	A	3.296e^-5	1	INTRON kuz
X	17020323	X_17020323_SNP [dm3] X_17126290_SNP [dm6]	A	C	3.303e^-5	1	INTRON CG5004	TF binding site BDTNP1_TFBS_dl
2L	568147	2L_568147_SNP [dm3] 2L_568147_SNP [dm6]	C	T	3.319e^-5	1	UPSTREAM CG2807 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16554412	3L_16554412_SNP [dm3] 3L_16561312_SNP [dm6]	G	A	3.346e^-5	1	INTERGENIC
2R	11291137	2R_11291137_SNP [dm3] 2R_15403632_SNP [dm6]	T	A	3.348e^-5	1	INTRON CG43729
3R	10533643	3R_10533643_SNP [dm3] 3R_14707921_SNP [dm6]	G	A	3.410e^-5	1	INTRON kibra
3R	10153683	3R_10153683_SNP [dm3] 3R_14327961_SNP [dm6]	G	A	3.447e^-5	1	UPSTREAM spn-B DOWNSTREAM CG3321 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	10964751	3R_10964751_SNP [dm3] 3R_15139029_SNP [dm6]	A	G	3.452e^-5	1	UPSTREAM CG3987 DOWNSTREAM CG3984 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	674808	X_674808_SNP [dm3] X_780775_SNP [dm6]	C	T	3.489e^-5	1	INTRON fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	7422510	3L_7422510_SNP [dm3] 3L_7429410_SNP [dm6]	A	G	3.498e^-5	1	INTRON CG42458
3R	5803398	3R_5803398_SNP [dm3] 3R_9977676_SNP [dm6]	G	A	3.503e^-5	1	INTRON Glut4EF
2R	12967974	2R_12967974_SNP [dm3] 2R_17080469_SNP [dm6]	C	T	3.520e^-5	1	INTRON CG30460
2L	19314678	2L_19314678_SNP [dm3] 2L_19314678_SNP [dm6]	A	C	3.592e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8876687	2L_8876687_SNP [dm3] 2L_8876687_SNP [dm6]	C	T	3.612e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	20224506	2R_20224506_INS [dm3] 2R_24336983_INS [dm6]	A	ATA	3.667e^-5	1	INTERGENIC
3L	20261571	3L_20261571_SNP [dm3] 3L_20268471_SNP [dm6]	G	C	3.700e^-5	1	SYNONYMOUS_CODING CG32228 DOWNSTREAM gogo
3R	24051740	3R_24051740_SNP [dm3] 3R_28226018_SNP [dm6]	A	G	3.883e^-5	1	INTRON CG34354	TF binding site mE1_TFBS_HSA
2R	14285628	2R_14285628_SNP [dm3] 2R_18398123_SNP [dm6]	C	G	4.198e^-5	1	UPSTREAM GstE1 & 1 other INTRON GstE10
3R	4252841	3R_4252841_SNP [dm3] 3R_8427119_SNP [dm6]	T	C	4.283e^-5	1	INTRON CG45263
3R	6844216	3R_6844216_SNP [dm3] 3R_11018494_SNP [dm6]	C	A	4.333e^-5	1	INTRON CG34114
2R	10200470	2R_10200470_SNP [dm3] 2R_14312965_SNP [dm6]	G	A	4.340e^-5	1	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14454111	2L_14454111_SNP [dm3] 2L_14454111_SNP [dm6]	A	G	4.467e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19250201	2L_19250201_SNP [dm3] 2L_19250201_SNP [dm6]	C	G	4.581e^-5	1	INTERGENIC
2L	19252673	2L_19252673_SNP [dm3] 2L_19252673_SNP [dm6]	T	C	4.619e^-5	1	INTERGENIC
2L	14252433	2L_14252433_SNP [dm3] 2L_14252433_SNP [dm6]	G	A	4.667e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8201471	3L_8201471_SNP [dm3] 3L_8208371_SNP [dm6]	A	T	4.973e^-5	1	INTERGENIC
2R	12576992	2R_12576992_SNP [dm3] 2R_16689487_SNP [dm6]	A	C	5.008e^-5	1	INTRON CG30463
3R	3244244	3R_3244244_SNP [dm3] 3R_7418522_SNP [dm6]	G	A	5.010e^-5	1	UPSTREAM CG31544 INTERGENIC
2R	11291119	2R_11291119_SNP [dm3] 2R_15403614_SNP [dm6]	G	A	5.038e^-5	1	INTRON CG43729
3L	835171	3L_835171_SNP [dm3] 3L_835171_SNP [dm6]	C	T	5.102e^-5	1	SYNONYMOUS_CODING CG42553 UPSTREAM CG42554	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	4222512	3R_4222512_SNP [dm3] 3R_8396790_SNP [dm6]	A	G	5.176e^-5	1	INTRON CG45263
3R	4225570	3R_4225570_SNP [dm3] 3R_8399848_SNP [dm6]	G	C	5.193e^-5	1	INTRON CG45263
3R	5766811	3R_5766811_SNP [dm3] 3R_9941089_SNP [dm6]	G	T	5.216e^-5	1	INTRON Glut4EF
2R	11291123	2R_11291123_SNP [dm3] 2R_15403618_SNP [dm6]	T	A	5.264e^-5	1	INTRON CG43729
2R	11291124	2R_11291124_SNP [dm3] 2R_15403619_SNP [dm6]	A	T	5.339e^-5	1	INTRON CG43729
3L	4998404	3L_4998404_SNP [dm3] 3L_4998404_SNP [dm6]	A	C	5.389e^-5	1	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20603531	X_20603531_SNP [dm3] X_20732504_SNP [dm6]	T	C	5.434e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	7091001	2R_7091001_SNP [dm3] 2R_11203496_SNP [dm6]	G	T	5.457e^-5	1	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	8043134	3L_8043134_DEL [dm3] 3L_8050034_DEL [dm6]	AA	A	5.490e^-5	1	UTR_3_PRIME nmo
X	19896686	X_19896686_SNP [dm3] X_20002653_SNP [dm6]	A	T	5.502e^-5	1	UPSTREAM CG17003 INTERGENIC
2L	19255610	2L_19255610_SNP [dm3] 2L_19255610_SNP [dm6]	A	C	6.321e^-5	1	INTERGENIC
2R	12967643	2R_12967643_SNP [dm3] 2R_17080138_SNP [dm6]	A	C	6.396e^-5	1	INTRON CG30460
3R	24990925	3R_24990925_SNP [dm3] 3R_29165203_SNP [dm6]	A	C	6.630e^-5	1	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
3R	24702151	3R_24702151_SNP [dm3] 3R_28876429_SNP [dm6]	T	C	6.630e^-5	1	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11285592	2R_11285592_SNP [dm3] 2R_15398087_SNP [dm6]	A	C	6.634e^-5	1	INTERGENIC
2L	2339627	2L_2339627_SNP [dm3] 2L_2339627_SNP [dm6]	G	C	6.705e^-5	1	SYNONYMOUS_CODING eys INTRON CG9967
X	2214728	X_2214728_SNP [dm3] X_2320695_SNP [dm6]	A	T	6.715e^-5	1	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13004461	2R_13004461_SNP [dm3] 2R_17116956_SNP [dm6]	G	A	6.733e^-5	1	INTERGENIC
2L	19833264	2L_19833264_SNP [dm3] 2L_19833264_SNP [dm6]	A	G	6.809e^-5	1	INTRON sick
2R	13836981	2R_13836981_SNP [dm3] 2R_17949476_SNP [dm6]	T	C	6.884e^-5	1	INTERGENIC
2L	19807139	2L_19807139_SNP [dm3] 2L_19807139_SNP [dm6]	C	T	6.988e^-5	1	INTRON sick
3L	4584327	3L_4584327_SNP [dm3] 3L_4584327_SNP [dm6]	C	A	7.046e^-5	1	INTRON CG42540
2L	8791191	2L_8791191_SNP [dm3] 2L_8791191_SNP [dm6]	A	T	7.256e^-5	1	INTERGENIC
2L	13403447	2L_13403447_SNP [dm3] 2L_13403447_SNP [dm6]	T	C	7.352e^-5	1	INTRON CG7110	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14009658	3R_14009658_SNP [dm3] 3R_18183936_SNP [dm6]	A	G	7.379e^-5	1	SYNONYMOUS_CODING CG7208 UPSTREAM cdm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19257818	2L_19257818_SNP [dm3] 2L_19257818_SNP [dm6]	T	G	7.452e^-5	1	INTERGENIC
3L	4589366	3L_4589366_SNP [dm3] 3L_4589366_SNP [dm6]	G	A	7.571e^-5	1	INTRON CG42540
3L	3932859	3L_3932859_SNP [dm3] 3L_3932859_SNP [dm6]	C	G	7.685e^-5	1	INTRON Eip63F-1
3R	23867902	3R_23867902_SNP [dm3] 3R_28042180_SNP [dm6]	G	A	7.855e^-5	1	INTRON CG34362
2L	15010247	2L_15010247_SNP [dm3] 2L_15010247_SNP [dm6]	G	T	7.890e^-5	1	NON_SYNONYMOUS_CODING l_2_35Bd UPSTREAM l_2_35Bc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18083068	3L_18083068_SNP [dm3] 3L_18089968_SNP [dm6]	G	A	7.914e^-5	1	INTRON CG13698
2L	19313839	2L_19313839_SNP [dm3] 2L_19313839_SNP [dm6]	T	A	8.117e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16193092	3R_16193092_SNP [dm3] 3R_20367370_SNP [dm6]	C	T	8.130e^-5	1	INTERGENIC
3L	2045380	3L_2045380_SNP [dm3] 3L_2045380_SNP [dm6]	T	A	8.189e^-5	1	SYNONYMOUS_CODING sls INTRON sls
3R	4222806	3R_4222806_SNP [dm3] 3R_8397084_SNP [dm6]	G	A	8.357e^-5	1	INTRON CG45263
2L	1292033	2L_1292033_SNP [dm3] 2L_1292033_SNP [dm6]	G	T	8.477e^-5	1	INTRON robo3
3R	5749466	3R_5749466_SNP [dm3] 3R_9923744_SNP [dm6]	T	C	8.606e^-5	1	INTRON Glut4EF
3L	18151006	3L_18151006_SNP [dm3] 3L_18157906_SNP [dm6]	G	A	8.657e^-5	1	INTRON CG13699	TF binding site mE1_TFBS_HSA
3R	13552148	3R_13552148_SNP [dm3] 3R_17726426_SNP [dm6]	A	T	8.759e^-5	1	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	3244223	3R_3244223_SNP [dm3] 3R_7418501_SNP [dm6]	G	T	8.918e^-5	1	UPSTREAM CG31544 INTERGENIC
2L	10834576	2L_10834576_SNP [dm3] 2L_10834576_SNP [dm6]	A	G	8.922e^-5	1	INTRON Nos
2L	19265241	2L_19265241_SNP [dm3] 2L_19265241_SNP [dm6]	T	C	8.924e^-5	1	INTERGENIC
2R	7080150	2R_7080150_SNP [dm3] 2R_11192645_SNP [dm6]	C	T	8.955e^-5	1	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad
3R	15232997	3R_15232997_SNP [dm3] 3R_19407275_SNP [dm6]	G	T	8.992e^-5	1	DOWNSTREAM CG5316 INTERGENIC
2L	4133030	2L_4133030_SNP [dm3] 2L_4133030_SNP [dm6]	C	T	9.059e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13592101	3R_13592101_SNP [dm3] 3R_17766379_SNP [dm6]	T	A	9.152e^-5	1	INTERGENIC
3R	4244441	3R_4244441_DEL [dm3] 3R_8418719_DEL [dm6]	GATACAGCAAA...	G	9.268e^-5	1	INTRON CG45263
3L	8642944	3L_8642944_SNP [dm3] 3L_8649844_SNP [dm6]	C	T	9.301e^-5	1	NON_SYNONYMOUS_CODING Pex7 UPSTREAM Arr2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3985774	3L_3985774_SNP [dm3] 3L_3985774_SNP [dm6]	T	C	9.337e^-5	1	INTRON scrt
2L	14831787	2L_14831787_SNP [dm3] 2L_14831787_SNP [dm6]	C	A	9.532e^-5	1	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	6733794	2R_6733794_SNP [dm3] 2R_10846289_SNP [dm6]	G	C	9.626e^-5	1	INTRON CG30015	TF binding site mE1_TFBS_cad
2L	17916231	2L_17916231_SNP [dm3] 2L_17916231_SNP [dm6]	G	T	9.633e^-5	1	INTERGENIC
X	5903288	X_5903288_SNP [dm3] X_6009255_SNP [dm6]	A	C	9.720e^-5	1	INTRON mab-21
3L	8170426	3L_8170426_SNP [dm3] 3L_8177326_SNP [dm6]	T	C	9.732e^-5	1	SYNONYMOUS_CODING Nmt	TF binding site mE1_TFBS_sens
X	2215906	X_2215906_INS [dm3] X_2321873_INS [dm6]	G	GTATTGGTATTGGT...	9.773e^-5	1	INTRON phl EXON CR34052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	2215908	X_2215908_SNP [dm3] X_2321875_SNP [dm6]	C	T	9.773e^-5	1	INTRON phl EXON CR34052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	4791394	2L_4791394_SNP [dm3] 2L_4791394_SNP [dm6]	G	A	9.780e^-5	1	INTRON CG15630
3R	23867859	3R_23867859_SNP [dm3] 3R_28042137_SNP [dm6]	A	T	9.789e^-5	1	INTRON CG34362
3L	4268579	3L_4268579_SNP [dm3] 3L_4268579_SNP [dm6]	A	T	9.851e^-5	1	INTRON CG1273
2R	12577025	2R_12577025_SNP [dm3] 2R_16689520_SNP [dm6]	C	T	1.002e^-4	1	INTRON CG30463
3R	4239087	3R_4239087_SNP [dm3] 3R_8413365_SNP [dm6]	G	C	1.020e^-4	1	INTRON CG45263
3L	14087853	3L_14087853_INS [dm3] 3L_14094753_INS [dm6]	T	TT	1.021e^-4	1	UTR_3_PRIME Fbp1	TF binding site mE1_TFBS_cad
X	10864726	X_10864726_SNP [dm3] X_10970693_SNP [dm6]	C	A	1.024e^-4	1	INTRON CG42339
2R	14161636	2R_14161636_INS [dm3] 2R_18274131_INS [dm6]	A	AGCAGCA	1.028e^-4	1	INTERGENIC
3R	23728913	3R_23728913_SNP [dm3] 3R_27903191_SNP [dm6]	T	C	1.037e^-4	1	INTRON CG34353
2R	14712735	2R_14712735_SNP [dm3] 2R_18825230_SNP [dm6]	A	G	1.040e^-4	1	INTRON CG15097
2R	7077122	2R_7077122_SNP [dm3] 2R_11189617_SNP [dm6]	C	A	1.041e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9504890	2L_9504890_SNP [dm3] 2L_9504890_SNP [dm6]	G	C	1.046e^-4	1	INTRON CG33298
2R	19850926	2R_19850926_SNP [dm3] 2R_23963403_SNP [dm6]	T	C	1.056e^-4	1	SYNONYMOUS_CODING Fmo-1 UPSTREAM CG13566	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13167385	2R_13167385_SNP [dm3] 2R_17279880_SNP [dm6]	A	G	1.072e^-4	1	INTRON mbl
3R	6846285	3R_6846285_SNP [dm3] 3R_11020563_SNP [dm6]	T	C	1.073e^-4	1	INTRON CG34114
X	3153265	X_3153265_SNP [dm3] X_3259232_SNP [dm6]	T	C	1.074e^-4	1	INTRON dnc
2R	7660319	2R_7660319_SNP [dm3] 2R_11772814_SNP [dm6]	A	C	1.093e^-4	1	INTRON ths
2R	14610306	2R_14610306_SNP [dm3] 2R_18722801_SNP [dm6]	A	G	1.096e^-4	1	INTRON Hs3st-A
2R	20224502	2R_20224502_SNP [dm3] 2R_24336979_SNP [dm6]	G	T	1.103e^-4	1	INTERGENIC
2R	7427758	2R_7427758_SNP [dm3] 2R_11540253_SNP [dm6]	A	G	1.130e^-4	1	INTERGENIC
2L	14252693	2L_14252693_SNP [dm3] 2L_14252693_SNP [dm6]	A	T	1.132e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	3244237	3R_3244237_SNP [dm3] 3R_7418515_SNP [dm6]	T	A	1.137e^-4	1	UPSTREAM CG31544 INTERGENIC
2L	19314775	2L_19314775_SNP [dm3] 2L_19314775_SNP [dm6]	G	C	1.141e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24051736	3R_24051736_INS [dm3] 3R_28226014_INS [dm6]	T	TA	1.144e^-4	1	INTRON CG34354	TF binding site mE1_TFBS_HSA
2L	5095286	2L_5095286_SNP [dm3] 2L_5095286_SNP [dm6]	A	C	1.152e^-4	1	UTR_3_PRIME CG5828 UPSTREAM CG4230	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	20331886	3R_20331886_SNP [dm3] 3R_24506164_SNP [dm6]	T	A	1.180e^-4	1	INTERGENIC	transposable element FlyBase
3L	7390489	3L_7390489_SNP [dm3] 3L_7397389_SNP [dm6]	C	T	1.192e^-4	1	UPSTREAM CG8562 INTRON CG32379
2R	14285649	2R_14285649_SNP [dm3] 2R_18398144_SNP [dm6]	G	T	1.208e^-4	1	UPSTREAM GstE1 & 1 other INTRON GstE10
2L	6613307	2L_6613307_DEL [dm3] 2L_6613307_DEL [dm6]	TT	T	1.208e^-4	1	INTRON CG11050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	19924391	2L_19924391_SNP [dm3] 2L_19924391_SNP [dm6]	G	A	1.217e^-4	1	DOWNSTREAM CR43827 INTRON sick
3R	16981088	3R_16981088_SNP [dm3] 3R_21155366_SNP [dm6]	A	G	1.217e^-4	1	SYNONYMOUS_CODING SNF4Agamma UPSTREAM SNF4Agamma
2R	14161650	2R_14161650_SNP [dm3] 2R_18274145_SNP [dm6]	G	A	1.221e^-4	1	INTERGENIC
3R	6842491	3R_6842491_SNP [dm3] 3R_11016769_SNP [dm6]	T	C	1.233e^-4	1	INTRON CG34114
3L	7780485	3L_7780485_SNP [dm3] 3L_7787385_SNP [dm6]	A	T	1.236e^-4	1	INTRON CG32369
2R	6435332	2R_6435332_SNP [dm3] 2R_10547827_SNP [dm6]	A	T	1.274e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	10153287	3R_10153287_SNP [dm3] 3R_14327565_SNP [dm6]	C	T	1.294e^-4	1	UTR_3_PRIME CG3321 UPSTREAM Afti & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	8170486	3L_8170486_SNP [dm3] 3L_8177386_SNP [dm6]	A	G	1.299e^-4	1	SYNONYMOUS_CODING Nmt	TF binding site mE1_TFBS_sens
2L	19263911	2L_19263911_SNP [dm3] 2L_19263911_SNP [dm6]	G	T	1.299e^-4	1	DOWNSTREAM CR44191 INTERGENIC
3L	8702117	3L_8702117_SNP [dm3] 3L_8709017_SNP [dm6]	C	T	1.321e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	24702114	3R_24702114_SNP [dm3] 3R_28876392_SNP [dm6]	A	G	1.328e^-4	1	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9657426	2L_9657426_SNP [dm3] 2L_9657426_SNP [dm6]	C	A	1.339e^-4	1	DOWNSTREAM CG33299 INTERGENIC
2L	5160637	2L_5160637_SNP [dm3] 2L_5160637_SNP [dm6]	T	A	1.347e^-4	1	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19924388	2L_19924388_SNP [dm3] 2L_19924388_SNP [dm6]	C	A	1.347e^-4	1	DOWNSTREAM CR43827 INTRON sick
3R	4244453	3R_4244453_SNP [dm3] 3R_8418731_SNP [dm6]	G	A	1.351e^-4	1	INTRON CG45263
3R	4244456	3R_4244456_DEL [dm3] 3R_8418734_DEL [dm6]	AGACAACTATCATTTGCTTT...	A	1.351e^-4	1	INTRON CG45263
3R	10151042	3R_10151042_SNP [dm3] 3R_14325320_SNP [dm6]	G	C	1.358e^-4	1	NON_SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_sens
3R	10151114	3R_10151114_SNP [dm3] 3R_14325392_SNP [dm6]	A	T	1.358e^-4	1	NON_SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_sens
3R	24082336	3R_24082336_SNP [dm3] 3R_28256614_SNP [dm6]	C	A	1.381e^-4	1	INTERGENIC
3L	2040738	3L_2040738_DEL [dm3] 3L_2040738_DEL [dm6]	AAGTGTGAATCTA...	A	1.390e^-4	1	INTRON sls
2R	7210941	2R_7210941_SNP [dm3] 2R_11323436_SNP [dm6]	G	T	1.396e^-4	1	UPSTREAM sha INTERGENIC
2L	19747373	2L_19747373_SNP [dm3] 2L_19747373_SNP [dm6]	T	C	1.398e^-4	1	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5396166	3R_5396166_SNP [dm3] 3R_9570444_SNP [dm6]	T	C	1.400e^-4	1	UTR_3_PRIME CG9396 UPSTREAM CG16790
3L	9181896	3L_9181896_SNP [dm3] 3L_9188796_SNP [dm6]	T	C	1.400e^-4	1	INTERGENIC
3L	875646	3L_875646_SNP [dm3] 3L_875646_SNP [dm6]	T	G	1.408e^-4	1	INTRON CG32479
X	17020608	X_17020608_SNP [dm3] X_17126575_SNP [dm6]	C	T	1.436e^-4	1	SYNONYMOUS_CODING CG5004	TF binding site mE1_TFBS_sens
3L	18083033	3L_18083033_SNP [dm3] 3L_18089933_SNP [dm6]	G	A	1.459e^-4	1	SYNONYMOUS_CODING CG13698
3L	9211400	3L_9211400_SNP [dm3] 3L_9218300_SNP [dm6]	G	A	1.469e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	21413506	3R_21413506_SNP [dm3] 3R_25587784_SNP [dm6]	C	T	1.472e^-4	1	INTRON msi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5428948	2L_5428948_SNP [dm3] 2L_5428948_SNP [dm6]	A	C	1.477e^-4	1	INTERGENIC
2L	19637658	2L_19637658_SNP [dm3] 2L_19637658_SNP [dm6]	G	T	1.485e^-4	1	INTRON Lar
2R	15164976	2R_15164976_SNP [dm3] 2R_19277471_SNP [dm6]	T	A	1.497e^-4	1	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14076367	3L_14076367_SNP [dm3] 3L_14083267_SNP [dm6]	A	G	1.502e^-4	1	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
3L	6147845	3L_6147845_SNP [dm3] 3L_6154745_SNP [dm6]	G	A	1.509e^-4	1	EXON CR45421	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7977491	3L_7977491_SNP [dm3] 3L_7984391_SNP [dm6]	T	C	1.540e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	6906479	2L_6906479_DEL [dm3] 2L_6906479_DEL [dm6]	TGC	A	1.551e^-4	1	UTR_3_PRIME Nlg2 DOWNSTREAM CG13773
2L	18941559	2L_18941559_SNP [dm3] 2L_18941559_SNP [dm6]	T	G	1.558e^-4	1	SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_HSA
2R	18881064	2R_18881064_SNP [dm3] 2R_22993541_SNP [dm6]	A	T	1.563e^-4	1	DOWNSTREAM CG9896 INTRON twi
X	3291422	X_3291422_SNP [dm3] X_3397389_SNP [dm6]	T	A	1.575e^-4	1	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4282829	3L_4282829_SNP [dm3] 3L_4282829_SNP [dm6]	A	G	1.584e^-4	1	UPSTREAM CG11583 DOWNSTREAM srw INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Ubx
2L	568747	2L_568747_SNP [dm3] 2L_568747_SNP [dm6]	T	C	1.596e^-4	1	SYNONYMOUS_CODING CG2807 UPSTREAM Nle	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3941995	3L_3941995_SNP [dm3] 3L_3941995_SNP [dm6]	C	G	1.603e^-4	1	SYNONYMOUS_CODING CG10863 UPSTREAM CG14982 DOWNSTREAM CR43916
2L	2612989	2L_2612989_SNP [dm3] 2L_2612989_SNP [dm6]	G	A	1.605e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11847563	2L_11847563_SNP [dm3] 2L_11847563_SNP [dm6]	C	T	1.606e^-4	1	SYNONYMOUS_CODING Mal-B1 INTRON Pde1c
2L	8876649	2L_8876649_SNP [dm3] 2L_8876649_SNP [dm6]	G	C	1.614e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	12517308	2L_12517308_SNP [dm3] 2L_12517308_SNP [dm6]	A	T	1.616e^-4	1	INTRON bun
3L	3762275	3L_3762275_SNP [dm3] 3L_3762275_SNP [dm6]	T	A	1.626e^-4	1	INTRON CG32264
2R	14610307	2R_14610307_SNP [dm3] 2R_18722802_SNP [dm6]	A	G	1.637e^-4	1	INTRON Hs3st-A
3L	4584180	3L_4584180_SNP [dm3] 3L_4584180_SNP [dm6]	G	A	1.639e^-4	1	INTRON CG42540
3R	5749460	3R_5749460_SNP [dm3] 3R_9923738_SNP [dm6]	C	T	1.642e^-4	1	INTRON Glut4EF
3R	25693270	3R_25693270_SNP [dm3] 3R_29867548_SNP [dm6]	G	A	1.644e^-4	1	UPSTREAM Zip99C INTRON Zip99C	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2R	12967335	2R_12967335_SNP [dm3] 2R_17079830_SNP [dm6]	T	A	1.648e^-4	1	INTRON CG30460
X	541281	X_541281_SNP [dm3] X_647248_SNP [dm6]	C	G	1.652e^-4	1	UPSTREAM Roc1a DOWNSTREAM CG13367 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	12967640	2R_12967640_SNP [dm3] 2R_17080135_SNP [dm6]	C	T	1.687e^-4	1	INTRON CG30460
3R	23387164	3R_23387164_SNP [dm3] 3R_27561442_SNP [dm6]	C	T	1.695e^-4	1	UPSTREAM snmRNA:157 & 1 other DOWNSTREAM wdb INTERGENIC
3L	5209665	3L_5209665_SNP [dm3] 3L_5216565_SNP [dm6]	G	A	1.696e^-4	1	INTRON shep
2L	391220	2L_391220_SNP [dm3] 2L_391220_SNP [dm6]	A	T	1.719e^-4	1	INTERGENIC
2R	18872435	2R_18872435_SNP [dm3] 2R_22984912_SNP [dm6]	C	A	1.731e^-4	1	NON_SYNONYMOUS_CODING CG32833 UPSTREAM CG32834 & 2 others DOWNSTREAM mir-4939 & 1 other
2R	13004304	2R_13004304_SNP [dm3] 2R_17116799_SNP [dm6]	T	A	1.736e^-4	1	INTERGENIC
3R	24718123	3R_24718123_SNP [dm3] 3R_28892401_SNP [dm6]	G	C	1.755e^-4	1	INTRON Doa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	20224470	2R_20224470_DEL [dm3] 2R_24336947_DEL [dm6]	TTTGTTTTGGTGCGGTGAAT...	T	1.758e^-4	1	UPSTREAM CR44282 INTERGENIC
X	5053861	X_5053861_SNP [dm3] X_5159828_SNP [dm6]	C	T	1.775e^-4	1	INTRON rg & 1 other
2R	18872390	2R_18872390_SNP [dm3] 2R_22984867_SNP [dm6]	A	C	1.776e^-4	1	NON_SYNONYMOUS_CODING CG32833 UPSTREAM CG32834 & 2 others DOWNSTREAM mir-4939 & 1 other
3R	3233945	3R_3233945_SNP [dm3] 3R_7408223_SNP [dm6]	C	T	1.786e^-4	1	SYNONYMOUS_CODING Ir84a
2R	7081501	2R_7081501_SNP [dm3] 2R_11193996_SNP [dm6]	A	G	1.790e^-4	1	INTRON shn
3R	18689763	3R_18689763_SNP [dm3] 3R_22864041_SNP [dm6]	G	A	1.794e^-4	1	INTERGENIC
2R	11291136	2R_11291136_SNP [dm3] 2R_15403631_SNP [dm6]	G	C	1.800e^-4	1	INTRON CG43729
3L	9046152	3L_9046152_SNP [dm3] 3L_9053052_SNP [dm6]	C	T	1.808e^-4	1	INTRON Argk	TF binding site mE1_TFBS_HSA
3L	5632922	3L_5632922_SNP [dm3] 3L_5639822_SNP [dm6]	C	T	1.809e^-4	1	INTRON Blimp-1
3R	26188282	3R_26188282_SNP [dm3] 3R_30362560_SNP [dm6]	G	T	1.821e^-4	1	UTR_3_PRIME hdc DOWNSTREAM hdc
3L	8163768	3L_8163768_SNP [dm3] 3L_8170668_SNP [dm6]	A	G	1.825e^-4	1	UTR_3_PRIME RecQ4	TF binding site mE1_TFBS_cnc
3R	24539426	3R_24539426_SNP [dm3] 3R_28713704_SNP [dm6]	A	C	1.827e^-4	1	INTRON htt
2L	19676493	2L_19676493_SNP [dm3] 2L_19676493_SNP [dm6]	C	G	1.828e^-4	1	INTRON Lar
2R	14610297	2R_14610297_SNP [dm3] 2R_18722792_SNP [dm6]	C	G	1.836e^-4	1	INTRON Hs3st-A
2R	15266744	2R_15266744_SNP [dm3] 2R_19379239_SNP [dm6]	C	T	1.841e^-4	1	INTRON CG10062
3R	7160937	3R_7160937_SNP [dm3] 3R_11335215_SNP [dm6]	G	T	1.857e^-4	1	UTR_5_PRIME pros INTRON pros
3R	22659370	3R_22659370_SNP [dm3] 3R_26833648_SNP [dm6]	G	T	1.863e^-4	1	INTRON Tl
2R	6740715	2R_6740715_SNP [dm3] 2R_10853210_SNP [dm6]	C	A	1.864e^-4	1	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	7001790	2L_7001790_SNP [dm3] 2L_7001790_SNP [dm6]	G	C	1.868e^-4	1	INTRON uif
3R	5796937	3R_5796937_DEL [dm3] 3R_9971215_DEL [dm6]	GG	G	1.876e^-4	1	INTRON Glut4EF
3R	6888787	3R_6888787_DEL [dm3] 3R_11063065_DEL [dm6]	CAGC	C	1.877e^-4	1	INTERGENIC
3L	7989817	3L_7989817_SNP [dm3] 3L_7996717_SNP [dm6]	C	G	1.879e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	14700784	X_14700784_SNP [dm3] X_14806751_SNP [dm6]	A	C	1.897e^-4	1	INTRON rut
3L	13838215	3L_13838215_SNP [dm3] 3L_13845115_SNP [dm6]	G	T	1.911e^-4	1	UTR_3_PRIME Tsp68C UPSTREAM Hml	TF binding site mE1_TFBS_bab1
2R	14195131	2R_14195131_SNP [dm3] 2R_18307626_SNP [dm6]	T	A	1.911e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	3358580	3R_3358580_SNP [dm3] 3R_7532858_SNP [dm6]	T	A	1.912e^-4	1	DOWNSTREAM alpha-Est5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	6844180	3R_6844180_SNP [dm3] 3R_11018458_SNP [dm6]	C	A	1.914e^-4	1	INTRON CG34114
3R	5361396	3R_5361396_SNP [dm3] 3R_9535674_SNP [dm6]	G	A	1.914e^-4	1	UTR_3_PRIME mura
3L	4686583	3L_4686583_SNP [dm3] 3L_4686583_SNP [dm6]	G	T	1.916e^-4	1	INTRON axo
3R	15233108	3R_15233108_DEL [dm3] 3R_19407386_DEL [dm6]	TGCTT	T	1.929e^-4	1	INTERGENIC
3R	25169780	3R_25169780_SNP [dm3] 3R_29344058_SNP [dm6]	G	A	1.930e^-4	1	INTERGENIC
2L	6307282	2L_6307282_SNP [dm3] 2L_6307282_SNP [dm6]	G	A	1.934e^-4	1	INTRON Ddr
3L	8170438	3L_8170438_SNP [dm3] 3L_8177338_SNP [dm6]	T	C	1.937e^-4	1	SYNONYMOUS_CODING Nmt	TF binding site mE1_TFBS_sens
3R	24700716	3R_24700716_SNP [dm3] 3R_28874994_SNP [dm6]	G	A	1.988e^-4	1	UTR_3_PRIME CG14529 UPSTREAM CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7573167	2R_7573167_SNP [dm3] 2R_11685662_SNP [dm6]	A	C	2.002e^-4	1	NON_SYNONYMOUS_CODING CG13196 INTRON Buffy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10127848	3L_10127848_SNP [dm3] 3L_10134748_SNP [dm6]	T	C	2.007e^-4	1	INTRON dpr6
3L	7234496	3L_7234496_SNP [dm3] 3L_7241396_SNP [dm6]	T	C	2.007e^-4	1	UPSTREAM Neos & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2624790	3L_2624790_SNP [dm3] 3L_2624790_SNP [dm6]	T	C	2.033e^-4	1	INTRON Pxn
3L	10602606	3L_10602606_SNP [dm3] 3L_10609506_SNP [dm6]	A	T	2.046e^-4	1	INTERGENIC
3R	13592092	3R_13592092_SNP [dm3] 3R_17766370_SNP [dm6]	A	G	2.056e^-4	1	INTERGENIC
3L	8169613	3L_8169613_SNP [dm3] 3L_8176513_SNP [dm6]	G	T	2.073e^-4	1	SYNONYMOUS_CODING Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14250919	3R_14250919_SNP [dm3] 3R_18425197_SNP [dm6]	G	A	2.077e^-4	1	DOWNSTREAM fru INTRON fru
3L	12430616	3L_12430616_SNP [dm3] 3L_12437516_SNP [dm6]	C	T	2.112e^-4	1	INTERGENIC
3R	3438089	3R_3438089_SNP [dm3] 3R_7612367_SNP [dm6]	T	C	2.112e^-4	1	INTRON CG34127
3R	24702045	3R_24702045_SNP [dm3] 3R_28876323_SNP [dm6]	T	C	2.112e^-4	1	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12971301	2R_12971301_SNP [dm3] 2R_17083796_SNP [dm6]	A	T	2.132e^-4	1	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15156418	3R_15156418_SNP [dm3] 3R_19330696_SNP [dm6]	C	T	2.140e^-4	1	EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	568912	X_568912_SNP [dm3] X_674879_SNP [dm6]	G	A	2.144e^-4	1	INTERGENIC
3R	15181205	3R_15181205_SNP [dm3] 3R_19355483_SNP [dm6]	G	A	2.153e^-4	1	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	16190130	3R_16190130_SNP [dm3] 3R_20364408_SNP [dm6]	A	G	2.159e^-4	1	INTERGENIC
3R	7113557	3R_7113557_SNP [dm3] 3R_11287835_SNP [dm6]	C	A	2.165e^-4	1	INTRON CR31386
3R	5816818	3R_5816818_INS [dm3] 3R_9991096_INS [dm6]	A	ATCAGTAAAGGTCAAAGCTC...	2.166e^-4	1	UTR_3_PRIME Glut4EF
3R	3252231	3R_3252231_SNP [dm3] 3R_7426509_SNP [dm6]	T	C	2.183e^-4	1	INTERGENIC
2R	8543224	2R_8543224_SNP [dm3] 2R_12655719_SNP [dm6]	A	G	2.183e^-4	1	UTR_3_PRIME ZnT49B UPSTREAM CG8646
3L	9258444	3L_9258444_SNP [dm3] 3L_9265344_SNP [dm6]	T	C	2.186e^-4	1	INTRON GluRIB
2R	13450579	2R_13450579_SNP [dm3] 2R_17563074_SNP [dm6]	G	A	2.195e^-4	1	NON_SYNONYMOUS_CODING Klp54D UPSTREAM CG43324 DOWNSTREAM Klp54D	TF binding site mE1_TFBS_ttk
2L	19235203	2L_19235203_SNP [dm3] 2L_19235203_SNP [dm6]	C	A	2.196e^-4	1	INTERGENIC
2L	19762814	2L_19762814_SNP [dm3] 2L_19762814_SNP [dm6]	T	C	2.197e^-4	1	NON_SYNONYMOUS_CODING fbp SPLICE_SITE_REGION fbp START_GAINED fbp UTR_5_PRIME fbp
3R	13591663	3R_13591663_SNP [dm3] 3R_17765941_SNP [dm6]	C	T	2.198e^-4	1	INTERGENIC
X	2215909	X_2215909_DEL [dm3] X_2321876_DEL [dm6]	TCGTCGCGCA	T	2.200e^-4	1	INTRON phl EXON CR34052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	18941721	2L_18941721_SNP [dm3] 2L_18941721_SNP [dm6]	C	A	2.207e^-4	1	SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8878587	2R_8878587_INS [dm3] 2R_12991082_INS [dm6]	G	GCGTGTGTG	2.208e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	15266872	2R_15266872_SNP [dm3] 2R_19379367_SNP [dm6]	T	C	2.210e^-4	1	SPLICE_SITE_REGION CG10062 INTRON CG10062
2L	3887069	2L_3887069_SNP [dm3] 2L_3887069_SNP [dm6]	T	G	2.228e^-4	1	SYNONYMOUS_CODING capu INTRON capu
3R	24307048	3R_24307048_INS [dm3] 3R_28481326_INS [dm6]	T	TGAAGGTACGACAGCGT...	2.236e^-4	1	INTERGENIC
2L	4989727	2L_4989727_SNP [dm3] 2L_4989727_SNP [dm6]	A	G	2.238e^-4	1	INTRON CG34126
3L	3442665	3L_3442665_SNP [dm3] 3L_3442665_SNP [dm6]	G	A	2.242e^-4	1	INTRON eIF5B
3L	3442667	3L_3442667_SNP [dm3] 3L_3442667_SNP [dm6]	A	G	2.242e^-4	1	INTRON eIF5B
2R	16860089	2R_16860089_SNP [dm3] 2R_20972584_SNP [dm6]	C	A	2.243e^-4	1	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7660317	2R_7660317_SNP [dm3] 2R_11772812_SNP [dm6]	C	A	2.247e^-4	1	INTRON ths
2L	1034799	2L_1034799_SNP [dm3] 2L_1034799_SNP [dm6]	A	G	2.285e^-4	1	UPSTREAM IA-2 INTRON IA-2
3L	20212074	3L_20212074_SNP [dm3] 3L_20218974_SNP [dm6]	G	A	2.310e^-4	1	NON_SYNONYMOUS_CODING CG6933	TF binding site mE1_TFBS_cad
2R	10114903	2R_10114903_SNP [dm3] 2R_14227398_SNP [dm6]	A	T	2.310e^-4	1	INTRON CG8468	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9678992	2L_9678992_SNP [dm3] 2L_9678992_SNP [dm6]	G	A	2.320e^-4	1	INTERGENIC
3R	24306910	3R_24306910_DEL [dm3] 3R_28481188_DEL [dm6]	GTACCTGCATATAGG...	G	2.328e^-4	1	INTERGENIC
2R	14194088	2R_14194088_SNP [dm3] 2R_18306583_SNP [dm6]	G	A	2.338e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	24747756	3R_24747756_SNP [dm3] 3R_28922034_SNP [dm6]	C	T	2.339e^-4	1	UTR_3_PRIME Doa DOWNSTREAM Doa	TF binding site BDTNP1_TFBS_twi
2R	8666478	2R_8666478_SNP [dm3] 2R_12778973_SNP [dm6]	C	G	2.341e^-4	1	EXON CR45266	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	566022	X_566022_SNP [dm3] X_671989_SNP [dm6]	C	T	2.347e^-4	1	INTERGENIC
2R	12874944	2R_12874944_SNP [dm3] 2R_16987439_SNP [dm6]	C	T	2.350e^-4	1	INTRON Cbp53E
2L	12398246	2L_12398246_SNP [dm3] 2L_12398246_SNP [dm6]	T	A	2.362e^-4	1	UPSTREAM Pkd2 DOWNSTREAM bru-2 INTERGENIC
2L	2039512	2L_2039512_SNP [dm3] 2L_2039512_SNP [dm6]	T	A	2.371e^-4	1	UPSTREAM Su_dx_ INTRON Su_dx_	TF binding site BDTNP1_TFBS_dl
3R	23867873	3R_23867873_SNP [dm3] 3R_28042151_SNP [dm6]	A	T	2.387e^-4	1	INTRON CG34362
3L	16248678	3L_16248678_SNP [dm3] 3L_16255578_SNP [dm6]	T	C	2.396e^-4	1	DOWNSTREAM CG13054 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2229637	X_2229637_SNP [dm3] X_2335604_SNP [dm6]	G	T	2.407e^-4	1	UPSTREAM Ilp6 INTRON phl	TF binding site BDTNP1_TFBS_dl
2L	19924451	2L_19924451_SNP [dm3] 2L_19924451_SNP [dm6]	A	T	2.409e^-4	1	DOWNSTREAM CR43827 INTRON sick
3L	22086834	3L_22086834_SNP [dm3] 3L_22093734_SNP [dm6]	A	G	2.423e^-4	1	INTERGENIC
2R	18562122	2R_18562122_SNP [dm3] 2R_22674617_SNP [dm6]	A	G	2.432e^-4	1	UPSTREAM CR44761 INTERGENIC	enhancer mE1_CBP_Enhancers
2R	7077018	2R_7077018_SNP [dm3] 2R_11189513_SNP [dm6]	A	T	2.435e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	20917492	3L_20917492_SNP [dm3] 3L_20924392_SNP [dm6]	C	A	2.439e^-4	1	INTERGENIC
2R	6554941	2R_6554941_SNP [dm3] 2R_10667436_SNP [dm6]	G	A	2.444e^-4	1	INTERGENIC
2R	7081530	2R_7081530_SNP [dm3] 2R_11194025_SNP [dm6]	C	A	2.445e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl
2L	16524753	2L_16524753_DEL [dm3] 2L_16524753_DEL [dm6]	CTTAA	C	2.448e^-4	1	INTRON CG5953
2L	12517312	2L_12517312_SNP [dm3] 2L_12517312_SNP [dm6]	T	A	2.452e^-4	1	INTRON bun
3R	23466076	3R_23466076_INS [dm3] 3R_27640354_INS [dm6]	C	CGC	2.459e^-4	1	DOWNSTREAM tau & 1 other INTRON tau
2R	16860002	2R_16860002_SNP [dm3] 2R_20972497_SNP [dm6]	C	T	2.469e^-4	1	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14052493	3R_14052493_SNP [dm3] 3R_18226771_SNP [dm6]	C	T	2.485e^-4	1	SYNONYMOUS_CODING Mdh2 UPSTREAM CG7168	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
3R	6846292	3R_6846292_SNP [dm3] 3R_11020570_SNP [dm6]	C	T	2.489e^-4	1	INTRON CG34114
3R	6845132	3R_6845132_SNP [dm3] 3R_11019410_SNP [dm6]	A	T	2.502e^-4	1	INTRON CG34114
2L	11829242	2L_11829242_SNP [dm3] 2L_11829242_SNP [dm6]	C	A	2.513e^-4	1	UTR_5_PRIME esc INTRON Pde1c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4055658	2L_4055658_SNP [dm3] 2L_4055658_SNP [dm6]	C	G	2.526e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	14989772	3L_14989772_SNP [dm3] 3L_14996672_SNP [dm6]	C	T	2.526e^-4	1	SYNONYMOUS_CODING Zip71B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	848518	3L_848518_SNP [dm3] 3L_848518_SNP [dm6]	G	A	2.535e^-4	1	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21673969	3R_21673969_SNP [dm3] 3R_25848247_SNP [dm6]	C	G	2.542e^-4	1	UPSTREAM CR45656 EXON CR45657
3L	19660058	3L_19660058_SNP [dm3] 3L_19666958_SNP [dm6]	A	G	2.547e^-4	1	INTERGENIC
2R	20001500	2R_20001500_SNP [dm3] 2R_24113977_SNP [dm6]	T	C	2.548e^-4	1	UPSTREAM CG3253 INTRON CG4049	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23867831	3R_23867831_SNP [dm3] 3R_28042109_SNP [dm6]	T	G	2.550e^-4	1	INTRON CG34362
2R	7709862	2R_7709862_SNP [dm3] 2R_11822357_SNP [dm6]	G	A	2.555e^-4	1	INTERGENIC
2R	7081531	2R_7081531_SNP [dm3] 2R_11194026_SNP [dm6]	C	G	2.559e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl
2R	5997794	2R_5997794_SNP [dm3] 2R_10110289_SNP [dm6]	C	T	2.568e^-4	1	SYNONYMOUS_CODING Pfk UPSTREAM Pfk DOWNSTREAM 14-3-3zeta
X	565660	X_565660_SNP [dm3] X_671627_SNP [dm6]	G	T	2.575e^-4	1	INTERGENIC
2L	19248472	2L_19248472_SNP [dm3] 2L_19248472_SNP [dm6]	T	C	2.579e^-4	1	INTERGENIC
3L	22949028	3L_22949028_SNP [dm3] 3L_22955928_SNP [dm6]	G	T	2.581e^-4	1	UPSTREAM CG32461 INTERGENIC
2L	19650639	2L_19650639_INS [dm3] 2L_19650639_INS [dm6]	T	TAT	2.582e^-4	1	INTRON Lar
3L	11146704	3L_11146704_SNP [dm3] 3L_11153604_SNP [dm6]	C	T	2.590e^-4	1	INTRON CG32082
3L	10910269	3L_10910269_SNP [dm3] 3L_10917169_SNP [dm6]	A	C	2.591e^-4	1	INTERGENIC
3R	14061829	3R_14061829_SNP [dm3] 3R_18236107_SNP [dm6]	G	A	2.594e^-4	1	UPSTREAM repo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16881596	2L_16881596_SNP [dm3] 2L_16881596_SNP [dm6]	A	G	2.594e^-4	1	NON_SYNONYMOUS_CODING CG31743 UTR_3_PRIME CG34313	TF binding site mE1_TFBS_HSA
3L	12645958	3L_12645958_SNP [dm3] 3L_12652858_SNP [dm6]	C	A	2.595e^-4	1	EXON CR43431	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18930219	3L_18930219_SNP [dm3] 3L_18937119_SNP [dm6]	C	G	2.597e^-4	1	INTRON CG32204
3L	10127931	3L_10127931_SNP [dm3] 3L_10134831_SNP [dm6]	C	T	2.600e^-4	1	INTRON dpr6
2R	13602756	2R_13602756_SNP [dm3] 2R_17715251_SNP [dm6]	C	A	2.604e^-4	1	INTRON CG6424	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	16234934	3L_16234934_SNP [dm3] 3L_16241834_SNP [dm6]	G	A	2.627e^-4	1	INTERGENIC
2R	10267039	2R_10267039_SNP [dm3] 2R_14379534_SNP [dm6]	A	T	2.628e^-4	1	INTRON Dh44-R1
2R	7105953	2R_7105953_SNP [dm3] 2R_11218448_SNP [dm6]	C	T	2.634e^-4	1	INTRON CG9084	TF binding site BDTNP1_TFBS_dl
3R	4849139	3R_4849139_SNP [dm3] 3R_9023417_SNP [dm6]	T	A	2.637e^-4	1	SPLICE_SITE_DONOR CR31429 NON_SYNONYMOUS_CODING neur INTRON CR31429	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
3L	18602424	3L_18602424_SNP [dm3] 3L_18609324_SNP [dm6]	G	A	2.638e^-4	1	UPSTREAM CG32201 INTRON CG4174 & 2 others
3L	3452783	3L_3452783_SNP [dm3] 3L_3452783_SNP [dm6]	T	C	2.669e^-4	1	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	15245782	3R_15245782_SNP [dm3] 3R_19420060_SNP [dm6]	C	T	2.673e^-4	1	INTRON CG31221
3L	20311205	3L_20311205_SNP [dm3] 3L_20318105_SNP [dm6]	T	A	2.682e^-4	1	UPSTREAM CR43875 INTRON Spn77Ba
2L	2027386	2L_2027386_SNP [dm3] 2L_2027386_SNP [dm6]	C	T	2.683e^-4	1	SYNONYMOUS_CODING CG4238	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7396508	3L_7396508_SNP [dm3] 3L_7403408_SNP [dm6]	A	T	2.699e^-4	1	SYNONYMOUS_CODING CG8560
3R	15233117	3R_15233117_SNP [dm3] 3R_19407395_SNP [dm6]	A	T	2.709e^-4	1	INTERGENIC
2L	13430674	2L_13430674_SNP [dm3] 2L_13430674_SNP [dm6]	T	G	2.713e^-4	1	INTRON CG42784
3L	10125884	3L_10125884_SNP [dm3] 3L_10132784_SNP [dm6]	A	T	2.725e^-4	1	INTRON dpr6
2L	19024537	2L_19024537_INS [dm3] 2L_19024537_INS [dm6]	A	ATACAT	2.727e^-4	1	UPSTREAM CR43700 DOWNSTREAM CG15172 INTERGENIC
2L	14055452	2L_14055452_SNP [dm3] 2L_14055452_SNP [dm6]	C	T	2.734e^-4	1	INTRON nAChRalpha5
2L	16524781	2L_16524781_SNP [dm3] 2L_16524781_SNP [dm6]	G	C	2.736e^-4	1	INTRON CG5953
3L	6683635	3L_6683635_SNP [dm3] 3L_6690535_SNP [dm6]	T	G	2.737e^-4	1	NON_SYNONYMOUS_CODING SP1173
3L	8200605	3L_8200605_SNP [dm3] 3L_8207505_SNP [dm6]	T	C	2.749e^-4	1	INTERGENIC
2L	8820904	2L_8820904_SNP [dm3] 2L_8820904_SNP [dm6]	A	G	2.759e^-4	1	INTERGENIC
3R	10964750	3R_10964750_SNP [dm3] 3R_15139028_SNP [dm6]	T	A	2.771e^-4	1	UPSTREAM CG3987 DOWNSTREAM CG3984 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8821062	2L_8821062_SNP [dm3] 2L_8821062_SNP [dm6]	T	G	2.778e^-4	1	INTERGENIC
2L	8821067	2L_8821067_SNP [dm3] 2L_8821067_SNP [dm6]	G	A	2.778e^-4	1	INTERGENIC
3L	20694621	3L_20694621_SNP [dm3] 3L_20701521_SNP [dm6]	A	T	2.779e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	13400302	3L_13400302_SNP [dm3] 3L_13407202_SNP [dm6]	G	A	2.796e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7081606	2R_7081606_SNP [dm3] 2R_11194101_SNP [dm6]	T	C	2.805e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl
3R	4254654	3R_4254654_SNP [dm3] 3R_8428932_SNP [dm6]	T	A	2.806e^-4	1	INTRON CG45263
3R	23867881	3R_23867881_SNP [dm3] 3R_28042159_SNP [dm6]	T	G	2.809e^-4	1	INTRON CG34362
2L	8820118	2L_8820118_SNP [dm3] 2L_8820118_SNP [dm6]	C	T	2.812e^-4	1	INTERGENIC
2L	19254249	2L_19254249_SNP [dm3] 2L_19254249_SNP [dm6]	A	C	2.819e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16952594	X_16952594_SNP [dm3] X_17058561_SNP [dm6]	A	G	2.820e^-4	1	INTRON CG45002
2L	3347199	2L_3347199_SNP [dm3] 2L_3347199_SNP [dm6]	T	A	2.820e^-4	1	INTRON E23
2L	1291988	2L_1291988_SNP [dm3] 2L_1291988_SNP [dm6]	G	A	2.820e^-4	1	INTRON robo3
2L	14690941	2L_14690941_SNP [dm3] 2L_14690941_SNP [dm6]	T	A	2.821e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2127800	2L_2127800_SNP [dm3] 2L_2127800_SNP [dm6]	G	T	2.826e^-4	1	UTR_3_PRIME CG4259 DOWNSTREAM CG4259
2R	7081709	2R_7081709_SNP [dm3] 2R_11194204_SNP [dm6]	T	A	2.827e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl
2L	8820955	2L_8820955_SNP [dm3] 2L_8820955_SNP [dm6]	A	G	2.827e^-4	1	INTERGENIC
3R	18690333	3R_18690333_SNP [dm3] 3R_22864611_SNP [dm6]	T	C	2.837e^-4	1	INTERGENIC
2R	10267057	2R_10267057_SNP [dm3] 2R_14379552_SNP [dm6]	C	A	2.837e^-4	1	INTRON Dh44-R1
3R	5742381	3R_5742381_SNP [dm3] 3R_9916659_SNP [dm6]	A	G	2.841e^-4	1	INTRON Glut4EF
X	5712385	X_5712385_SNP [dm3] X_5818352_SNP [dm6]	G	T	2.853e^-4	1	UPSTREAM CG15765 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7088586	2R_7088586_DEL [dm3] 2R_11201081_DEL [dm6]	GCAATACGGAGAAGG...	G	2.857e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	10148919	3R_10148919_SNP [dm3] 3R_14323197_SNP [dm6]	G	C	2.864e^-4	1	NON_SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2769706	3R_2769706_SNP [dm3] 3R_6943984_SNP [dm6]	T	C	2.882e^-4	1	INTRON Antp
3L	11179684	3L_11179684_SNP [dm3] 3L_11186584_SNP [dm6]	T	G	2.883e^-4	1	INTRON GlcAT-P
3R	20296262	3R_20296262_SNP [dm3] 3R_24470540_SNP [dm6]	T	C	2.887e^-4	1	DOWNSTREAM CG31128 INTERGENIC
2L	8509138	2L_8509138_SNP [dm3] 2L_8509138_SNP [dm6]	C	T	2.917e^-4	1	UTR_3_PRIME CG13096 DOWNSTREAM CG13096	TF binding site mE1_TFBS_cad
3R	23867795	3R_23867795_SNP [dm3] 3R_28042073_SNP [dm6]	A	T	2.920e^-4	1	INTRON CG34362
3R	4851249	3R_4851249_SNP [dm3] 3R_9025527_SNP [dm6]	A	G	2.920e^-4	1	INTRON neur	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3192255	2L_3192255_SNP [dm3] 2L_3192255_SNP [dm6]	T	C	2.924e^-4	1	INTRON CG34393
3L	8169396	3L_8169396_SNP [dm3] 3L_8176296_SNP [dm6]	A	T	2.931e^-4	1	UTR_3_PRIME Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	8125019	2R_8125019_SNP [dm3] 2R_12237514_SNP [dm6]	G	A	2.931e^-4	1	INTERGENIC
2R	19859985	2R_19859985_SNP [dm3] 2R_23972462_SNP [dm6]	A	T	2.939e^-4	1	UTR_5_PRIME mr DOWNSTREAM CG3065	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	2339630	2L_2339630_SNP [dm3] 2L_2339630_SNP [dm6]	A	G	2.949e^-4	1	SYNONYMOUS_CODING eys INTRON CG9967
2L	8820920	2L_8820920_SNP [dm3] 2L_8820920_SNP [dm6]	G	A	2.956e^-4	1	INTERGENIC
3R	9444537	3R_9444537_SNP [dm3] 3R_13618815_SNP [dm6]	C	T	2.960e^-4	1	UPSTREAM CR45680 INTERGENIC
3R	24991342	3R_24991342_SNP [dm3] 3R_29165620_SNP [dm6]	A	G	2.961e^-4	1	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
X	5331407	X_5331407_SNP [dm3] X_5437374_SNP [dm6]	C	T	2.998e^-4	1	INTERGENIC
2R	10676748	2R_10676748_SNP [dm3] 2R_14789243_SNP [dm6]	G	C	3.001e^-4	1	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	3864145	3R_3864145_SNP [dm3] 3R_8038423_SNP [dm6]	C	T	3.011e^-4	1	EXON CR44936	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9578591	3L_9578591_SNP [dm3] 3L_9585491_SNP [dm6]	T	G	3.033e^-4	1	INTRON CG42673
2R	6895491	2R_6895491_SNP [dm3] 2R_11007986_SNP [dm6]	C	G	3.050e^-4	1	INTRON luna
2L	16524766	2L_16524766_SNP [dm3] 2L_16524766_SNP [dm6]	G	A	3.051e^-4	1	INTRON CG5953
3R	13871345	3R_13871345_SNP [dm3] 3R_18045623_SNP [dm6]	A	G	3.063e^-4	1	UTR_3_PRIME htl
2L	3185004	2L_3185004_SNP [dm3] 2L_3185004_SNP [dm6]	T	C	3.083e^-4	1	NON_SYNONYMOUS_CODING CG34393
2L	4717200	2L_4717200_SNP [dm3] 2L_4717200_SNP [dm6]	A	T	3.110e^-4	1	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9717004	2R_9717004_SNP [dm3] 2R_13829499_SNP [dm6]	G	A	3.111e^-4	1	UTR_5_PRIME CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4131590	2L_4131590_SNP [dm3] 2L_4131590_SNP [dm6]	G	C	3.111e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10174721	2L_10174721_SNP [dm3] 2L_10174721_SNP [dm6]	G	A	3.115e^-4	1	DOWNSTREAM CG13137 INTRON CG44153
3R	13767567	3R_13767567_SNP [dm3] 3R_17941845_SNP [dm6]	C	A	3.117e^-4	1	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20152390	X_20152390_SNP [dm3] X_20281363_SNP [dm6]	G	T	3.122e^-4	1	INTERGENIC
3R	13871298	3R_13871298_SNP [dm3] 3R_18045576_SNP [dm6]	T	C	3.128e^-4	1	UTR_3_PRIME htl
3R	13261469	3R_13261469_SNP [dm3] 3R_17435747_SNP [dm6]	T	G	3.131e^-4	1	INTRON CG5873
2R	20992889	2R_20992889_SNP [dm3] 2R_25105366_SNP [dm6]	C	T	3.140e^-4	1	INTRON lov
3R	5733099	3R_5733099_SNP [dm3] 3R_9907377_SNP [dm6]	C	A	3.144e^-4	1	INTRON Glut4EF
3L	13168057	3L_13168057_SNP [dm3] 3L_13174957_SNP [dm6]	G	A	3.149e^-4	1	SYNONYMOUS_CODING snky	TF binding site mE1_TFBS_sens
3L	5875532	3L_5875532_SNP [dm3] 3L_5882432_SNP [dm6]	C	A	3.153e^-4	1	NON_SYNONYMOUS_CODING CG13287	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8509036	2L_8509036_SNP [dm3] 2L_8509036_SNP [dm6]	A	C	3.156e^-4	1	DOWNSTREAM CG13096 INTERGENIC
2R	7088567	2R_7088567_SNP [dm3] 2R_11201062_SNP [dm6]	G	A	3.157e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
X	17020962	X_17020962_SNP [dm3] X_17126929_SNP [dm6]	G	T	3.168e^-4	1	SYNONYMOUS_CODING CG5004	TF binding site mE1_TFBS_sens
2L	4371749	2L_4371749_SNP [dm3] 2L_4371749_SNP [dm6]	C	G	3.169e^-4	1	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	20101412	2L_20101412_SNP [dm3] 2L_20101412_SNP [dm6]	C	T	3.174e^-4	1	INTRON Kua
2L	6532100	2L_6532100_SNP [dm3] 2L_6532100_SNP [dm6]	G	T	3.187e^-4	1	INTRON eya	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14638141	X_14638141_SNP [dm3] X_14744108_SNP [dm6]	C	A	3.199e^-4	1	INTRON NetB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19316570	2L_19316570_SNP [dm3] 2L_19316570_SNP [dm6]	C	G	3.209e^-4	1	INTERGENIC
2L	19685831	2L_19685831_SNP [dm3] 2L_19685831_SNP [dm6]	T	C	3.212e^-4	1	INTRON Lar
3L	4148057	3L_4148057_SNP [dm3] 3L_4148057_SNP [dm6]	G	C	3.213e^-4	1	UPSTREAM CG1299 INTERGENIC
3R	23867812	3R_23867812_SNP [dm3] 3R_28042090_SNP [dm6]	C	G	3.214e^-4	1	INTRON CG34362
3R	18692806	3R_18692806_SNP [dm3] 3R_22867084_SNP [dm6]	C	T	3.216e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	22075475	3L_22075475_SNP [dm3] 3L_22082375_SNP [dm6]	T	C	3.220e^-4	1	UPSTREAM msopa INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18881057	2R_18881057_SNP [dm3] 2R_22993534_SNP [dm6]	G	A	3.222e^-4	1	DOWNSTREAM CG9896 INTRON twi
2L	11968425	2L_11968425_SNP [dm3] 2L_11968425_SNP [dm6]	A	T	3.225e^-4	1	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13529194	3R_13529194_SNP [dm3] 3R_17703472_SNP [dm6]	C	T	3.225e^-4	1	INTRON osa
3R	6842564	3R_6842564_DEL [dm3] 3R_11016842_DEL [dm6]	AA	G	3.228e^-4	1	INTRON CG34114
3R	20811908	3R_20811908_SNP [dm3] 3R_24986186_SNP [dm6]	T	G	3.232e^-4	1	INTRON tnc
3R	3394566	3R_3394566_SNP [dm3] 3R_7568844_SNP [dm6]	G	A	3.241e^-4	1	INTERGENIC
3R	2663786	3R_2663786_SNP [dm3] 3R_6838064_SNP [dm6]	G	A	3.243e^-4	1	INTRON Scr	regulatory region REDfly_CRMs
2R	19875286	2R_19875286_SNP [dm3] 2R_23987763_SNP [dm6]	G	C	3.263e^-4	1	UPSTREAM Pask DOWNSTREAM CG30178 INTRON Phm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6573087	3L_6573087_SNP [dm3] 3L_6579987_SNP [dm6]	C	T	3.280e^-4	1	INTRON CG18769 & 1 other
3R	5766175	3R_5766175_SNP [dm3] 3R_9940453_SNP [dm6]	G	A	3.284e^-4	1	INTRON Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6581670	2L_6581670_SNP [dm3] 2L_6581670_SNP [dm6]	T	A	3.303e^-4	1	INTRON CG11319
3R	5758912	3R_5758912_SNP [dm3] 3R_9933190_SNP [dm6]	T	A	3.312e^-4	1	INTRON Glut4EF	TF binding site mE1_TFBS_HSA
3R	14273451	3R_14273451_SNP [dm3] 3R_18447729_SNP [dm6]	T	A	3.314e^-4	1	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9734449	2R_9734449_DEL [dm3] 2R_13846944_DEL [dm6]	TGTCGAT	T	3.330e^-4	1	UPSTREAM Syngr	TF binding site BDTNP1_TFBS_dl
2L	3332863	2L_3332863_SNP [dm3] 2L_3332863_SNP [dm6]	G	A	3.333e^-4	1	UTR_5_PRIME CG15408 UTR_3_PRIME CG3285 DOWNSTREAM CG3285	TF binding site mE1_TFBS_cad
3R	25493038	3R_25493038_SNP [dm3] 3R_29667316_SNP [dm6]	G	A	3.349e^-4	1	NON_SYNONYMOUS_CODING ppk20 DOWNSTREAM ppk21	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10480740	X_10480740_SNP [dm3] X_10586707_SNP [dm6]	T	C	3.349e^-4	1	INTERGENIC
2L	19760739	2L_19760739_SNP [dm3] 2L_19760739_SNP [dm6]	C	G	3.362e^-4	1	SYNONYMOUS_CODING CG10463 DOWNSTREAM fbp	TF binding site mE1_TFBS_cad
3L	10130746	3L_10130746_SNP [dm3] 3L_10137646_SNP [dm6]	T	C	3.367e^-4	1	INTRON dpr6
3R	23359420	3R_23359420_SNP [dm3] 3R_27533698_SNP [dm6]	T	G	3.374e^-4	1	UTR_3_PRIME CG12885
2L	6613296	2L_6613296_SNP [dm3] 2L_6613296_SNP [dm6]	G	A	3.374e^-4	1	INTRON CG11050	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10437525	X_10437525_SNP [dm3] X_10543492_SNP [dm6]	C	A	3.375e^-4	1	INTRON spri
3R	23737082	3R_23737082_SNP [dm3] 3R_27911360_SNP [dm6]	C	A	3.383e^-4	1	INTERGENIC
3R	17073095	3R_17073095_SNP [dm3] 3R_21247373_SNP [dm6]	A	G	3.385e^-4	1	UTR_5_PRIME ETHR
2L	19560569	2L_19560569_SNP [dm3] 2L_19560569_SNP [dm6]	G	A	3.393e^-4	1	NON_SYNONYMOUS_CODING Tep5
2L	6593920	2L_6593920_SNP [dm3] 2L_6593920_SNP [dm6]	C	T	3.394e^-4	1	INTRON CG11319
3R	5766644	3R_5766644_SNP [dm3] 3R_9940922_SNP [dm6]	C	T	3.422e^-4	1	INTRON Glut4EF
3L	18083333	3L_18083333_SNP [dm3] 3L_18090233_SNP [dm6]	T	G	3.427e^-4	1	INTRON CG13698
X	12905085	X_12905085_DEL [dm3] X_13011052_DEL [dm6]	TGCT	T	3.445e^-4	1	INTRON rad
3L	4584323	3L_4584323_DEL [dm3] 3L_4584323_DEL [dm6]	ATA	GC	3.456e^-4	1	INTRON CG42540
2R	6440982	2R_6440982_SNP [dm3] 2R_10553477_SNP [dm6]	C	T	3.474e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3184615	2L_3184615_SNP [dm3] 2L_3184615_SNP [dm6]	T	A	3.482e^-4	1	INTRON CG34393
2R	18879081	2R_18879081_SNP [dm3] 2R_22991558_SNP [dm6]	G	A	3.487e^-4	1	INTRON twi
X	14212517	X_14212517_SNP [dm3] X_14318484_SNP [dm6]	A	G	3.502e^-4	1	INTERGENIC
3R	5769871	3R_5769871_SNP [dm3] 3R_9944149_SNP [dm6]	G	A	3.505e^-4	1	UTR_3_PRIME Glut4EF INTRON Glut4EF
3L	12525923	3L_12525923_SNP [dm3] 3L_12532823_SNP [dm6]	T	G	3.514e^-4	1	INTRON Tsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	9933567	3R_9933567_SNP [dm3] 3R_14107845_SNP [dm6]	T	G	3.520e^-4	1	UTR_5_PRIME CG12402	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	4055656	2L_4055656_SNP [dm3] 2L_4055656_SNP [dm6]	T	G	3.529e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	22071470	3L_22071470_SNP [dm3] 3L_22078370_SNP [dm6]	A	T	3.538e^-4	1	DOWNSTREAM RpLP0 INTERGENIC
3L	6683636	3L_6683636_SNP [dm3] 3L_6690536_SNP [dm6]	T	G	3.538e^-4	1	SYNONYMOUS_CODING SP1173
2L	19250401	2L_19250401_SNP [dm3] 2L_19250401_SNP [dm6]	A	T	3.555e^-4	1	INTERGENIC
2L	19261792	2L_19261792_SNP [dm3] 2L_19261792_SNP [dm6]	G	C	3.559e^-4	1	SYNONYMOUS_CODING CG31797 UPSTREAM CR44191	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16611242	X_16611242_SNP [dm3] X_16717209_SNP [dm6]	G	A	3.578e^-4	1	INTRON CG34325
X	14032345	X_14032345_SNP [dm3] X_14138312_SNP [dm6]	A	G	3.586e^-4	1	INTERGENIC
3L	14997603	3L_14997603_SNP [dm3] 3L_15004503_SNP [dm6]	A	T	3.590e^-4	1	INTRON Reck
3R	4244072	3R_4244072_SNP [dm3] 3R_8418350_SNP [dm6]	C	T	3.592e^-4	1	INTRON CG45263
3L	6333356	3L_6333356_SNP [dm3] 3L_6340256_SNP [dm6]	A	C	3.593e^-4	1	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
3L	8879581	3L_8879581_SNP [dm3] 3L_8886481_SNP [dm6]	G	A	3.596e^-4	1	INTRON dally
2L	19637696	2L_19637696_SNP [dm3] 2L_19637696_SNP [dm6]	T	C	3.598e^-4	1	INTRON Lar
3R	23867832	3R_23867832_SNP [dm3] 3R_28042110_SNP [dm6]	A	T	3.599e^-4	1	INTRON CG34362
3R	23867840	3R_23867840_SNP [dm3] 3R_28042118_SNP [dm6]	A	G	3.599e^-4	1	INTRON CG34362
3R	23867846	3R_23867846_SNP [dm3] 3R_28042124_SNP [dm6]	C	T	3.599e^-4	1	INTRON CG34362
3R	23867847	3R_23867847_SNP [dm3] 3R_28042125_SNP [dm6]	T	A	3.599e^-4	1	INTRON CG34362
3L	3756282	3L_3756282_SNP [dm3] 3L_3756282_SNP [dm6]	G	A	3.608e^-4	1	INTRON CG32264	TF binding site mE1_TFBS_Trl
X	2323038	X_2323038_SNP [dm3] X_2429005_SNP [dm6]	C	G	3.619e^-4	1	UPSTREAM gt INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	19264786	2L_19264786_INS [dm3] 2L_19264786_INS [dm6]	T	TG	3.622e^-4	1	INTERGENIC
3L	11142321	3L_11142321_SNP [dm3] 3L_11149221_SNP [dm6]	C	T	3.633e^-4	1	DOWNSTREAM CG6216 INTRON CG32082
3R	15233088	3R_15233088_SNP [dm3] 3R_19407366_SNP [dm6]	T	G	3.643e^-4	1	INTERGENIC
3R	5755641	3R_5755641_SNP [dm3] 3R_9929919_SNP [dm6]	C	G	3.645e^-4	1	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl
2L	9144672	2L_9144672_SNP [dm3] 2L_9144672_SNP [dm6]	T	A	3.651e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2R	13554851	2R_13554851_SNP [dm3] 2R_17667346_SNP [dm6]	G	A	3.651e^-4	1	SYNONYMOUS_CODING eIF3-S8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23867820	3R_23867820_SNP [dm3] 3R_28042098_SNP [dm6]	A	C	3.664e^-4	1	INTRON CG34362
3L	16623108	3L_16623108_SNP [dm3] 3L_16630008_SNP [dm6]	A	T	3.665e^-4	1	INTRON Abl
3R	18856244	3R_18856244_SNP [dm3] 3R_23030522_SNP [dm6]	C	T	3.671e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17785116	2R_17785116_SNP [dm3] 2R_21897611_SNP [dm6]	C	T	3.679e^-4	1	INTRON Fili
2R	16995257	2R_16995257_SNP [dm3] 2R_21107752_SNP [dm6]	A	G	3.686e^-4	1	INTRON ktub
2L	13289364	2L_13289364_SNP [dm3] 2L_13289364_SNP [dm6]	T	A	3.689e^-4	1	UTR_3_PRIME Uvrag UPSTREAM CG31729 & 1 other
2L	19265740	2L_19265740_SNP [dm3] 2L_19265740_SNP [dm6]	A	G	3.712e^-4	1	INTERGENIC
2L	15486324	2L_15486324_DEL [dm3] 2L_15486324_DEL [dm6]	GG	G	3.727e^-4	1	UPSTREAM CR45293 DOWNSTREAM Tim17b2 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7089746	2R_7089746_SNP [dm3] 2R_11202241_SNP [dm6]	A	T	3.751e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3318409	2L_3318409_SNP [dm3] 2L_3318409_SNP [dm6]	T	A	3.755e^-4	1	DOWNSTREAM CG3277 INTRON CG3326
3R	13529202	3R_13529202_SNP [dm3] 3R_17703480_SNP [dm6]	A	C	3.756e^-4	1	INTRON osa
2R	5234856	2R_5234856_SNP [dm3] 2R_9347351_SNP [dm6]	A	T	3.759e^-4	1	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
3R	8512528	3R_8512528_SNP [dm3] 3R_12686806_SNP [dm6]	A	T	3.769e^-4	1	INTRON kar	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3762272	3L_3762272_SNP [dm3] 3L_3762272_SNP [dm6]	A	T	3.773e^-4	1	INTRON CG32264
X	14279786	X_14279786_SNP [dm3] X_14385753_SNP [dm6]	C	T	3.775e^-4	1	INTRON dpr8
3R	3256100	3R_3256100_SNP [dm3] 3R_7430378_SNP [dm6]	G	A	3.796e^-4	1	INTERGENIC
3L	14428816	3L_14428816_SNP [dm3] 3L_14435716_SNP [dm6]	T	C	3.801e^-4	1	INTRON bbg
2R	7660777	2R_7660777_SNP [dm3] 2R_11773272_SNP [dm6]	C	T	3.807e^-4	1	INTRON ths	TF binding site mE1_TFBS_sens
2L	19833123	2L_19833123_SNP [dm3] 2L_19833123_SNP [dm6]	C	T	3.820e^-4	1	INTRON sick
2L	9185006	2L_9185006_SNP [dm3] 2L_9185006_SNP [dm6]	C	T	3.821e^-4	1	INTRON tai	TF binding site mE1_TFBS_zfh1
2R	12968077	2R_12968077_SNP [dm3] 2R_17080572_SNP [dm6]	G	A	3.838e^-4	1	INTRON CG30460
3L	10964665	3L_10964665_SNP [dm3] 3L_10971565_SNP [dm6]	C	G	3.839e^-4	1	INTERGENIC
3R	24142047	3R_24142047_INS [dm3] 3R_28316325_INS [dm6]	A	AT	3.861e^-4	1	INTERGENIC
X	13704493	X_13704493_SNP [dm3] X_13810460_SNP [dm6]	A	C	3.863e^-4	1	NON_SYNONYMOUS_CODING inaE UTR_3_PRIME inaE	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7093202	2R_7093202_SNP [dm3] 2R_11205697_SNP [dm6]	C	T	3.864e^-4	1	INTRON shn
2R	7710459	2R_7710459_SNP [dm3] 2R_11822954_SNP [dm6]	G	T	3.865e^-4	1	INTERGENIC
3L	8384640	3L_8384640_SNP [dm3] 3L_8391540_SNP [dm6]	C	T	3.879e^-4	1	UTR_5_PRIME Jon66Ci DOWNSTREAM ImpE1	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	5805054	3R_5805054_SNP [dm3] 3R_9979332_SNP [dm6]	A	T	3.901e^-4	1	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	6838591	3L_6838591_SNP [dm3] 3L_6845491_SNP [dm6]	T	G	3.906e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	20316231	2L_20316231_SNP [dm3] 2L_20316231_SNP [dm6]	C	T	3.911e^-4	1	INTRON spir EXON CR43606
2L	8810398	2L_8810398_SNP [dm3] 2L_8810398_SNP [dm6]	T	C	3.924e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20002929	2R_20002929_SNP [dm3] 2R_24115406_SNP [dm6]	G	T	3.926e^-4	1	SYNONYMOUS_CODING CG3253	TF binding site mE1_TFBS_sens
3L	4281838	3L_4281838_SNP [dm3] 3L_4281838_SNP [dm6]	C	T	3.928e^-4	1	SYNONYMOUS_CODING CG11583 DOWNSTREAM CG1311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7081536	2R_7081536_SNP [dm3] 2R_11194031_SNP [dm6]	C	T	3.928e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl
3L	20693958	3L_20693958_INS [dm3] 3L_20700858_INS [dm6]	T	CATTGTTATATACGCATTGT...	3.946e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	5557014	2L_5557014_DEL [dm3] 2L_5557014_DEL [dm6]	TT	T	3.950e^-4	1	INTRON GluRIIA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8170012	3L_8170012_SNP [dm3] 3L_8176912_SNP [dm6]	C	T	3.957e^-4	1	SYNONYMOUS_CODING Nmt UPSTREAM RecQ4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3170922	X_3170922_SNP [dm3] X_3276889_SNP [dm6]	T	C	3.959e^-4	1	INTRON dnc
2R	20990238	2R_20990238_SNP [dm3] 2R_25102715_SNP [dm6]	T	A	3.960e^-4	1	INTRON lov
3R	15180693	3R_15180693_SNP [dm3] 3R_19354971_SNP [dm6]	T	C	3.969e^-4	1	DOWNSTREAM CG43203 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	7095258	3L_7095258_SNP [dm3] 3L_7102158_SNP [dm6]	T	C	3.969e^-4	1	INTRON form3
3R	4340456	3R_4340456_SNP [dm3] 3R_8514734_SNP [dm6]	T	C	4.014e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16860012	2R_16860012_SNP [dm3] 2R_20972507_SNP [dm6]	G	C	4.017e^-4	1	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19464959	2R_19464959_INS [dm3] 2R_23577436_INS [dm6]	A	AAA	4.019e^-4	1	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	13440881	3R_13440881_SNP [dm3] 3R_17615159_SNP [dm6]	T	C	4.019e^-4	1	DOWNSTREAM CG14327 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	16995258	2R_16995258_INS [dm3] 2R_21107753_INS [dm6]	T	TG	4.021e^-4	1	INTRON ktub
3L	8384568	3L_8384568_SNP [dm3] 3L_8391468_SNP [dm6]	A	G	4.021e^-4	1	UPSTREAM Jon66Ci DOWNSTREAM ImpE1 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	13281537	3R_13281537_SNP [dm3] 3R_17455815_SNP [dm6]	C	T	4.026e^-4	1	DOWNSTREAM CG14330 INTERGENIC
2L	4371729	2L_4371729_SNP [dm3] 2L_4371729_SNP [dm6]	G	A	4.047e^-4	1	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	1787057	X_1787057_SNP [dm3] X_1893024_SNP [dm6]	A	G	4.048e^-4	1	INTRON arm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	3756299	3L_3756299_SNP [dm3] 3L_3756299_SNP [dm6]	C	G	4.062e^-4	1	INTRON CG32264	TF binding site mE1_TFBS_Trl
2L	9144674	2L_9144674_SNP [dm3] 2L_9144674_SNP [dm6]	C	A	4.072e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12342667	2L_12342667_SNP [dm3] 2L_12342667_SNP [dm6]	C	T	4.097e^-4	1	DOWNSTREAM CG43813 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21293111	X_21293111_SNP [dm3] X_21422084_SNP [dm6]	G	A	4.100e^-4	1	DOWNSTREAM CG42343 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	6683627	3L_6683627_SNP [dm3] 3L_6690527_SNP [dm6]	T	C	4.101e^-4	1	SYNONYMOUS_CODING SP1173
2L	9507168	2L_9507168_INS [dm3] 2L_9507168_INS [dm6]	A	AAAA	4.103e^-4	1	INTRON CG33298
2R	19860123	2R_19860123_SNP [dm3] 2R_23972600_SNP [dm6]	G	A	4.113e^-4	1	DOWNSTREAM CG3065 INTRON mr	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	8683533	3L_8683533_DEL [dm3] 3L_8690433_DEL [dm6]	GG	G	4.119e^-4	1	INTERGENIC
2R	12972388	2R_12972388_SNP [dm3] 2R_17084883_SNP [dm6]	C	T	4.124e^-4	1	INTRON CG30460
2R	12458964	2R_12458964_SNP [dm3] 2R_16571459_SNP [dm6]	G	T	4.130e^-4	1	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3569428	2L_3569428_SNP [dm3] 2L_3569428_SNP [dm6]	C	T	4.135e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sbb
2L	5552783	2L_5552783_SNP [dm3] 2L_5552783_SNP [dm6]	A	G	4.138e^-4	1	DOWNSTREAM CG14013 & 1 other INTERGENIC
2R	7556342	2R_7556342_SNP [dm3] 2R_11668837_SNP [dm6]	T	C	4.139e^-4	1	INTRON Roc2 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4000591	3L_4000591_SNP [dm3] 3L_4000591_SNP [dm6]	G	A	4.142e^-4	1	INTERGENIC
2R	20991159	2R_20991159_SNP [dm3] 2R_25103636_SNP [dm6]	C	T	4.148e^-4	1	INTRON lov
3L	4356101	3L_4356101_DEL [dm3] 3L_4356101_DEL [dm6]	AA	A	4.151e^-4	1	INTRON Cip4
3R	5746428	3R_5746428_SNP [dm3] 3R_9920706_SNP [dm6]	T	C	4.163e^-4	1	INTRON Glut4EF
2L	4136140	2L_4136140_SNP [dm3] 2L_4136140_SNP [dm6]	G	A	4.171e^-4	1	INTERGENIC
X	5720672	X_5720672_SNP [dm3] X_5826639_SNP [dm6]	C	T	4.191e^-4	1	INTRON CG15765	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19341467	2L_19341467_SNP [dm3] 2L_19341467_SNP [dm6]	C	A	4.196e^-4	1	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3476103	X_3476103_SNP [dm3] X_3582070_SNP [dm6]	T	C	4.199e^-4	1	INTRON AstA-R1
2L	19376938	2L_19376938_SNP [dm3] 2L_19376938_SNP [dm6]	C	A	4.211e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6188278	2R_6188278_SNP [dm3] 2R_10300773_SNP [dm6]	G	A	4.213e^-4	1	UPSTREAM CAP INTRON CAP
2R	6188323	2R_6188323_SNP [dm3] 2R_10300818_SNP [dm6]	C	T	4.213e^-4	1	UPSTREAM CAP INTRON CAP
3L	9211401	3L_9211401_SNP [dm3] 3L_9218301_SNP [dm6]	T	G	4.215e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	15266904	2R_15266904_SNP [dm3] 2R_19379399_SNP [dm6]	A	C	4.226e^-4	1	INTRON CG10062
3R	18879465	3R_18879465_SNP [dm3] 3R_23053743_SNP [dm6]	G	A	4.231e^-4	1	SYNONYMOUS_CODING p53 UTR_5_PRIME p53 UPSTREAM p53 DOWNSTREAM Gr94a & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	10130745	3L_10130745_SNP [dm3] 3L_10137645_SNP [dm6]	G	A	4.233e^-4	1	INTRON dpr6
2R	18882258	2R_18882258_SNP [dm3] 2R_22994735_SNP [dm6]	G	A	4.239e^-4	1	SYNONYMOUS_CODING CG9896 INTRON twi
2R	13663937	2R_13663937_SNP [dm3] 2R_17776432_SNP [dm6]	C	A	4.255e^-4	1	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad
3L	4268564	3L_4268564_SNP [dm3] 3L_4268564_SNP [dm6]	G	A	4.257e^-4	1	INTRON CG1273
2L	6238111	2L_6238111_SNP [dm3] 2L_6238111_SNP [dm6]	G	A	4.257e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25016869	3R_25016869_SNP [dm3] 3R_29191147_SNP [dm6]	A	T	4.279e^-4	1	INTRON CG14509
3R	25016873	3R_25016873_SNP [dm3] 3R_29191151_SNP [dm6]	G	A	4.279e^-4	1	INTRON CG14509
2R	14193959	2R_14193959_SNP [dm3] 2R_18306454_SNP [dm6]	T	A	4.283e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	7006986	2R_7006986_SNP [dm3] 2R_11119481_SNP [dm6]	C	G	4.317e^-4	1	UTR_3_PRIME Cyp12d1-p DOWNSTREAM Cyp12d1-p
X	2402542	X_2402542_SNP [dm3] X_2508509_SNP [dm6]	C	T	4.319e^-4	1	INTRON trol
3R	20331597	3R_20331597_SNP [dm3] 3R_24505875_SNP [dm6]	C	T	4.324e^-4	1	INTERGENIC
3R	4243979	3R_4243979_SNP [dm3] 3R_8418257_SNP [dm6]	T	G	4.351e^-4	1	INTRON CG45263
2L	2723380	2L_2723380_DEL [dm3] 2L_2723380_DEL [dm6]	AA	A	4.354e^-4	1	INTERGENIC
2R	12086047	2R_12086047_SNP [dm3] 2R_16198542_SNP [dm6]	T	C	4.384e^-4	1	SYNONYMOUS_CODING CG44243 UTR_3_PRIME CG42837 DOWNSTREAM shark	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14916673	2R_14916673_SNP [dm3] 2R_19029168_SNP [dm6]	G	C	4.392e^-4	1	UTR_5_PRIME 5-HT1B UPSTREAM CG43351	TF binding site mE1_TFBS_HSA
3R	5379115	3R_5379115_SNP [dm3] 3R_9553393_SNP [dm6]	G	A	4.404e^-4	1	SYNONYMOUS_CODING RnpS1 DOWNSTREAM CG9386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19725525	2L_19725525_SNP [dm3] 2L_19725525_SNP [dm6]	T	C	4.407e^-4	1	INTRON Lar
3L	10137115	3L_10137115_SNP [dm3] 3L_10144015_SNP [dm6]	A	C	4.412e^-4	1	INTERGENIC
3L	5429025	3L_5429025_SNP [dm3] 3L_5435925_SNP [dm6]	G	A	4.428e^-4	1	UPSTREAM CG34391 INTRON CG34391
3L	4562232	3L_4562232_SNP [dm3] 3L_4562232_SNP [dm6]	A	C	4.452e^-4	1	INTRON CG42540
X	668162	X_668162_DEL [dm3] X_774129_DEL [dm6]	CTTCCTACGTTTCTCCCATC...	C	4.455e^-4	1	INTRON fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27384144	3R_27384144_SNP [dm3] 3R_31558422_SNP [dm6]	G	T	4.457e^-4	1	NON_SYNONYMOUS_CODING nyo
3R	16031565	3R_16031565_SNP [dm3] 3R_20205843_SNP [dm6]	T	C	4.463e^-4	1	INTRON Nlg4
3L	6683806	3L_6683806_SNP [dm3] 3L_6690706_SNP [dm6]	A	G	4.466e^-4	1	NON_SYNONYMOUS_CODING SP1173
3L	14999591	3L_14999591_SNP [dm3] 3L_15006491_SNP [dm6]	C	T	4.470e^-4	1	INTRON Reck	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2053295	2L_2053295_SNP [dm3] 2L_2053295_SNP [dm6]	C	T	4.472e^-4	1	INTERGENIC
2R	12967404	2R_12967404_SNP [dm3] 2R_17079899_SNP [dm6]	C	T	4.477e^-4	1	INTRON CG30460
2R	15070154	2R_15070154_SNP [dm3] 2R_19182649_SNP [dm6]	A	G	4.483e^-4	1	INTRON hppy
2L	8769337	2L_8769337_SNP [dm3] 2L_8769337_SNP [dm6]	T	A	4.487e^-4	1	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
3R	15181003	3R_15181003_SNP [dm3] 3R_19355281_SNP [dm6]	G	T	4.510e^-4	1	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	6454026	2R_6454026_SNP [dm3] 2R_10566521_SNP [dm6]	C	T	4.515e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	5724824	3R_5724824_SNP [dm3] 3R_9899102_SNP [dm6]	G	T	4.524e^-4	1	INTRON Glut4EF
2L	12033234	2L_12033234_SNP [dm3] 2L_12033234_SNP [dm6]	A	G	4.532e^-4	1	NON_SYNONYMOUS_CODING dmGlut UPSTREAM CG18788	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16524777	2L_16524777_SNP [dm3] 2L_16524777_SNP [dm6]	A	G	4.535e^-4	1	INTRON CG5953
3R	25018686	3R_25018686_SNP [dm3] 3R_29192964_SNP [dm6]	A	T	4.551e^-4	1	INTRON CG14509
3R	23867785	3R_23867785_SNP [dm3] 3R_28042063_SNP [dm6]	G	A	4.572e^-4	1	INTRON CG34362
2L	2343201	2L_2343201_SNP [dm3] 2L_2343201_SNP [dm6]	T	C	4.575e^-4	1	INTRON CG9967 & 1 other
2L	2308125	2L_2308125_SNP [dm3] 2L_2308125_SNP [dm6]	A	T	4.581e^-4	1	DOWNSTREAM CG9967 INTRON CG16995
3R	4853306	3R_4853306_SNP [dm3] 3R_9027584_SNP [dm6]	C	T	4.585e^-4	1	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17329089	2R_17329089_SNP [dm3] 2R_21441584_SNP [dm6]	G	A	4.586e^-4	1	INTRON Sdc
2L	19879411	2L_19879411_SNP [dm3] 2L_19879411_SNP [dm6]	A	G	4.591e^-4	1	INTRON sick
3R	24051745	3R_24051745_SNP [dm3] 3R_28226023_SNP [dm6]	G	A	4.603e^-4	1	INTRON CG34354	TF binding site mE1_TFBS_HSA
2R	11870787	2R_11870787_SNP [dm3] 2R_15983282_SNP [dm6]	C	T	4.613e^-4	1	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad
3L	16171353	3L_16171353_SNP [dm3] 3L_16178253_SNP [dm6]	T	A	4.629e^-4	1	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19235411	2L_19235411_SNP [dm3] 2L_19235411_SNP [dm6]	C	T	4.639e^-4	1	INTERGENIC
X	2323319	X_2323319_SNP [dm3] X_2429286_SNP [dm6]	T	A	4.646e^-4	1	UPSTREAM gt INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	79242	3L_79242_SNP [dm3] 3L_79242_SNP [dm6]	C	G	4.653e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	20917090	3L_20917090_SNP [dm3] 3L_20923990_SNP [dm6]	A	C	4.653e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2L	10875888	2L_10875888_SNP [dm3] 2L_10875888_SNP [dm6]	C	A	4.654e^-4	1	INTERGENIC
3R	14327555	3R_14327555_SNP [dm3] 3R_18501833_SNP [dm6]	T	C	4.656e^-4	1	INTRON fru
2L	19225476	2L_19225476_SNP [dm3] 2L_19225476_SNP [dm6]	A	G	4.657e^-4	1	INTERGENIC
2R	15266975	2R_15266975_SNP [dm3] 2R_19379470_SNP [dm6]	C	T	4.666e^-4	1	SYNONYMOUS_CODING CG10062
2L	4055435	2L_4055435_INS [dm3] 2L_4055435_INS [dm6]	T	TT	4.672e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18783266	3R_18783266_SNP [dm3] 3R_22957544_SNP [dm6]	T	C	4.674e^-4	1	INTRON klg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8922026	2R_8922026_SNP [dm3] 2R_13034521_SNP [dm6]	C	T	4.675e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15331475	2L_15331475_SNP [dm3] 2L_15331475_SNP [dm6]	C	T	4.676e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14657143	3L_14657143_SNP [dm3] 3L_14664043_SNP [dm6]	A	G	4.681e^-4	1	INTRON dlp
3R	4222658	3R_4222658_SNP [dm3] 3R_8396936_SNP [dm6]	A	G	4.684e^-4	1	INTRON CG45263
3L	8170480	3L_8170480_SNP [dm3] 3L_8177380_SNP [dm6]	G	A	4.697e^-4	1	SYNONYMOUS_CODING Nmt	TF binding site mE1_TFBS_sens
3R	6884979	3R_6884979_INS [dm3] 3R_11059257_INS [dm6]	T	TGACCTT	4.703e^-4	1	INTERGENIC
2R	12967479	2R_12967479_SNP [dm3] 2R_17079974_SNP [dm6]	C	T	4.706e^-4	1	INTRON CG30460
3R	18760534	3R_18760534_SNP [dm3] 3R_22934812_SNP [dm6]	C	G	4.708e^-4	1	INTRON klg
2L	2158890	2L_2158890_SNP [dm3] 2L_2158890_SNP [dm6]	A	G	4.709e^-4	1	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19641824	2L_19641824_DEL [dm3] 2L_19641824_DEL [dm6]	TT	T	4.709e^-4	1	DOWNSTREAM CR44979 INTRON Lar
3L	7611993	3L_7611993_SNP [dm3] 3L_7618893_SNP [dm6]	T	A	4.711e^-4	1	INTRON CG33275
3R	14172488	3R_14172488_SNP [dm3] 3R_18346766_SNP [dm6]	G	T	4.711e^-4	1	INTRON CG15803
3L	8169871	3L_8169871_SNP [dm3] 3L_8176771_SNP [dm6]	G	A	4.712e^-4	1	SYNONYMOUS_CODING Nmt UPSTREAM RecQ4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9787920	2L_9787920_SNP [dm3] 2L_9787920_SNP [dm6]	A	T	4.715e^-4	1	NON_SYNONYMOUS_CODING IP3K1 EXON CR18854	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7768860	3R_7768860_SNP [dm3] 3R_11943138_SNP [dm6]	A	C	4.716e^-4	1	INTRON Cad87A
3L	12900542	3L_12900542_SNP [dm3] 3L_12907442_SNP [dm6]	A	G	4.720e^-4	1	INTERGENIC
3R	24748001	3R_24748001_SNP [dm3] 3R_28922279_SNP [dm6]	G	A	4.721e^-4	1	UTR_3_PRIME Doa UPSTREAM CG11828 DOWNSTREAM Doa
2L	3957510	2L_3957510_SNP [dm3] 2L_3957510_SNP [dm6]	G	C	4.725e^-4	1	INTRON fred
2L	11074233	2L_11074233_SNP [dm3] 2L_11074233_SNP [dm6]	G	A	4.739e^-4	1	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	11074251	2L_11074251_SNP [dm3] 2L_11074251_SNP [dm6]	T	G	4.739e^-4	1	DOWNSTREAM CR45725 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	13637855	3R_13637855_SNP [dm3] 3R_17812133_SNP [dm6]	A	G	4.740e^-4	1	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	11060730	3L_11060730_SNP [dm3] 3L_11067630_SNP [dm6]	T	C	4.741e^-4	1	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14610331	2R_14610331_SNP [dm3] 2R_18722826_SNP [dm6]	G	A	4.745e^-4	1	INTRON Hs3st-A
3L	13133595	3L_13133595_SNP [dm3] 3L_13140495_SNP [dm6]	C	T	4.749e^-4	1	INTERGENIC
3L	2147248	3L_2147248_SNP [dm3] 3L_2147248_SNP [dm6]	C	A	4.750e^-4	1	INTRON zormin
3R	21356003	3R_21356003_SNP [dm3] 3R_25530281_SNP [dm6]	T	G	4.751e^-4	1	INTRON msi
3L	13133591	3L_13133591_SNP [dm3] 3L_13140491_SNP [dm6]	T	A	4.753e^-4	1	INTERGENIC
2R	6740771	2R_6740771_SNP [dm3] 2R_10853266_SNP [dm6]	T	A	4.763e^-4	1	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24639452	3R_24639452_SNP [dm3] 3R_28813730_SNP [dm6]	C	T	4.764e^-4	1	SYNONYMOUS_CODING CG1646
X	20902112	X_20902112_SNP [dm3] X_21031085_SNP [dm6]	G	A	4.767e^-4	1	SYNONYMOUS_CODING CG1529	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	24848403	3R_24848403_SNP [dm3] 3R_29022681_SNP [dm6]	A	G	4.775e^-4	1	UPSTREAM CR44264 EXON CR45567
2L	6343117	2L_6343117_SNP [dm3] 2L_6343117_SNP [dm6]	T	C	4.778e^-4	1	UPSTREAM Cpr INTRON Cpr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	2752115	3R_2752115_SNP [dm3] 3R_6926393_SNP [dm6]	T	C	4.813e^-4	1	INTRON Antp
2L	6908138	2L_6908138_SNP [dm3] 2L_6908138_SNP [dm6]	G	A	4.823e^-4	1	UTR_5_PRIME Rat1 UPSTREAM CG13773	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16190024	3R_16190024_SNP [dm3] 3R_20364302_SNP [dm6]	A	C	4.829e^-4	1	INTERGENIC
2L	19240785	2L_19240785_INS [dm3] 2L_19240785_INS [dm6]	C	CCCACACACTTTCACAC...	4.842e^-4	1	INTERGENIC
2L	9548175	2L_9548175_SNP [dm3] 2L_9548175_SNP [dm6]	A	G	4.865e^-4	1	UTR_3_PRIME jp DOWNSTREAM jp & 1 other
3R	18350381	3R_18350381_SNP [dm3] 3R_22524659_SNP [dm6]	C	A	4.869e^-4	1	INTRON CG5346	TF binding site mE1_TFBS_sens
3L	2107527	3L_2107527_SNP [dm3] 3L_2107527_SNP [dm6]	G	A	4.877e^-4	1	INTRON sls	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2766940	3L_2766940_SNP [dm3] 3L_2766940_SNP [dm6]	T	C	4.896e^-4	1	UPSTREAM CG1240 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	19464953	2R_19464953_SNP [dm3] 2R_23577430_SNP [dm6]	G	T	4.900e^-4	1	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	6176401	3L_6176401_SNP [dm3] 3L_6183301_SNP [dm6]	T	G	4.907e^-4	1	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26567033	3R_26567033_SNP [dm3] 3R_30741311_SNP [dm6]	T	C	4.907e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7508596	2R_7508596_SNP [dm3] 2R_11621091_SNP [dm6]	A	G	4.917e^-4	1	INTRON CG9005	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4635430	3L_4635430_SNP [dm3] 3L_4635430_SNP [dm6]	C	A	4.920e^-4	1	UPSTREAM CG13716 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5262945	3R_5262945_SNP [dm3] 3R_9437223_SNP [dm6]	G	A	4.924e^-4	1	INTRON ps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	13200051	3R_13200051_SNP [dm3] 3R_17374329_SNP [dm6]	C	T	4.930e^-4	1	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8169099	3L_8169099_SNP [dm3] 3L_8175999_SNP [dm6]	A	G	4.936e^-4	1	UPSTREAM RecQ4 DOWNSTREAM Nmt INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	15180998	3R_15180998_SNP [dm3] 3R_19355276_SNP [dm6]	G	A	4.942e^-4	1	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	23725350	3R_23725350_SNP [dm3] 3R_27899628_SNP [dm6]	A	G	4.957e^-4	1	INTRON CG34353
3R	16031606	3R_16031606_SNP [dm3] 3R_20205884_SNP [dm6]	T	A	4.960e^-4	1	INTRON Nlg4
2R	20992012	2R_20992012_SNP [dm3] 2R_25104489_SNP [dm6]	T	A	4.964e^-4	1	INTRON lov
X	9444160	X_9444160_SNP [dm3] X_9550127_SNP [dm6]	T	G	4.990e^-4	1	INTRON CG32700
2R	10279945	2R_10279945_SNP [dm3] 2R_14392440_SNP [dm6]	C	T	4.994e^-4	1	DOWNSTREAM CG10104 INTERGENIC
2L	5296483	2L_5296483_SNP [dm3] 2L_5296483_SNP [dm6]	G	A	4.998e^-4	1	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10462561	2L_10462561_SNP [dm3] 2L_10462561_SNP [dm6]	G	A	5.001e^-4	1	DOWNSTREAM RluA-1 & 1 other INTERGENIC
2L	1034392	2L_1034392_SNP [dm3] 2L_1034392_SNP [dm6]	T	C	5.018e^-4	1	INTRON IA-2
3L	7596580	3L_7596580_SNP [dm3] 3L_7603480_SNP [dm6]	G	A	5.019e^-4	1	SYNONYMOUS_CODING CG33275
3R	15233259	3R_15233259_INS [dm3] 3R_19407537_INS [dm6]	A	TGATCC	5.030e^-4	1	INTERGENIC
3R	4222752	3R_4222752_SNP [dm3] 3R_8397030_SNP [dm6]	A	G	5.033e^-4	1	INTRON CG45263
3R	3358583	3R_3358583_SNP [dm3] 3R_7532861_SNP [dm6]	T	C	5.034e^-4	1	DOWNSTREAM alpha-Est5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9211335	3L_9211335_SNP [dm3] 3L_9218235_SNP [dm6]	G	T	5.072e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	18158191	2R_18158191_SNP [dm3] 2R_22270686_SNP [dm6]	G	T	5.074e^-4	1	UPSTREAM dve INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11146707	3L_11146707_SNP [dm3] 3L_11153607_SNP [dm6]	A	G	5.082e^-4	1	INTRON CG32082
3R	13871504	3R_13871504_SNP [dm3] 3R_18045782_SNP [dm6]	G	A	5.088e^-4	1	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
3R	25562532	3R_25562532_SNP [dm3] 3R_29736810_SNP [dm6]	G	A	5.092e^-4	1	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	19314095	2L_19314095_SNP [dm3] 2L_19314095_SNP [dm6]	C	T	5.094e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6339966	3L_6339966_SNP [dm3] 3L_6346866_SNP [dm6]	A	G	5.097e^-4	1	INTRON CG13300
3R	5757137	3R_5757137_SNP [dm3] 3R_9931415_SNP [dm6]	G	T	5.098e^-4	1	INTRON Glut4EF
2L	19314066	2L_19314066_SNP [dm3] 2L_19314066_SNP [dm6]	C	A	5.116e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24142045	3R_24142045_SNP [dm3] 3R_28316323_SNP [dm6]	C	A	5.133e^-4	1	INTERGENIC
2L	19252081	2L_19252081_SNP [dm3] 2L_19252081_SNP [dm6]	A	T	5.139e^-4	1	INTERGENIC
3R	27384181	3R_27384181_SNP [dm3] 3R_31558459_SNP [dm6]	C	A	5.146e^-4	1	NON_SYNONYMOUS_CODING nyo
2R	19841595	2R_19841595_SNP [dm3] 2R_23954072_SNP [dm6]	A	G	5.153e^-4	1	UPSTREAM thoc5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12395996	3L_12395996_SNP [dm3] 3L_12402896_SNP [dm6]	T	C	5.162e^-4	1	UTR_3_PRIME CG32103 UPSTREAM Smyd4 DOWNSTREAM CG32103
X	3794683	X_3794683_SNP [dm3] X_3900650_SNP [dm6]	C	T	5.169e^-4	1	INTRON CG42541
2R	6109280	2R_6109280_SNP [dm3] 2R_10221775_SNP [dm6]	G	A	5.172e^-4	1	INTRON Hr46 & 1 other
3R	25772729	3R_25772729_SNP [dm3] 3R_29947007_SNP [dm6]	G	T	5.173e^-4	1	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20600951	2L_20600951_SNP [dm3] 2L_20600951_SNP [dm6]	C	T	5.175e^-4	1	INTRON CR44909	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5428920	2L_5428920_SNP [dm3] 2L_5428920_SNP [dm6]	A	T	5.179e^-4	1	INTERGENIC
2R	16859819	2R_16859819_SNP [dm3] 2R_20972314_SNP [dm6]	T	A	5.179e^-4	1	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad
3L	6551664	3L_6551664_SNP [dm3] 3L_6558564_SNP [dm6]	G	A	5.179e^-4	1	INTRON CG18769
X	660976	X_660976_SNP [dm3] X_766943_SNP [dm6]	T	A	5.179e^-4	1	DOWNSTREAM CR44966 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	20139957	X_20139957_SNP [dm3] X_20268931_SNP [dm6]	A	G	5.181e^-4	1	SYNONYMOUS_CODING Inx6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18151063	3L_18151063_SNP [dm3] 3L_18157963_SNP [dm6]	T	A	5.219e^-4	1	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10135242	3L_10135242_SNP [dm3] 3L_10142142_SNP [dm6]	T	A	5.226e^-4	1	INTERGENIC
2R	7626818	2R_7626818_SNP [dm3] 2R_11739313_SNP [dm6]	T	C	5.240e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4437189	3R_4437189_INS [dm3] 3R_8611467_INS [dm6]	C	CC	5.240e^-4	1	INTRON 5-HT2B
2L	13483133	2L_13483133_SNP [dm3] 2L_13483133_SNP [dm6]	A	C	5.245e^-4	1	INTRON CG42784
3R	9918672	3R_9918672_SNP [dm3] 3R_14092950_SNP [dm6]	C	T	5.259e^-4	1	NON_SYNONYMOUS_CODING CCHa1 DOWNSTREAM Npc2b
2R	11284714	2R_11284714_SNP [dm3] 2R_15397209_SNP [dm6]	C	T	5.266e^-4	1	INTERGENIC
3L	13294747	3L_13294747_SNP [dm3] 3L_13301647_SNP [dm6]	C	T	5.267e^-4	1	SYNONYMOUS_CODING SP UPSTREAM CR43911
2L	16172446	2L_16172446_SNP [dm3] 2L_16172446_SNP [dm6]	C	T	5.271e^-4	1	SYNONYMOUS_CODING Ca-alpha1D UTR_5_PRIME Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14973074	3L_14973074_SNP [dm3] 3L_14979974_SNP [dm6]	C	T	5.276e^-4	1	INTRON CG3349	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12501808	2R_12501808_SNP [dm3] 2R_16614303_SNP [dm6]	T	C	5.277e^-4	1	INTRON CG5065
2L	4717258	2L_4717258_SNP [dm3] 2L_4717258_SNP [dm6]	C	T	5.278e^-4	1	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16999233	3R_16999233_SNP [dm3] 3R_21173511_SNP [dm6]	A	T	5.279e^-4	1	INTRON SNF4Agamma
2L	3191688	2L_3191688_SNP [dm3] 2L_3191688_SNP [dm6]	C	T	5.281e^-4	1	INTRON CG34393
X	15861700	X_15861700_SNP [dm3] X_15967667_SNP [dm6]	G	T	5.282e^-4	1	INTRON mmd
2L	6043145	2L_6043145_SNP [dm3] 2L_6043145_SNP [dm6]	T	A	5.286e^-4	1	NON_SYNONYMOUS_CODING ade2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3508395	3L_3508395_SNP [dm3] 3L_3508395_SNP [dm6]	C	A	5.292e^-4	1	SYNONYMOUS_CODING CG42324	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10838880	3R_10838880_SNP [dm3] 3R_15013158_SNP [dm6]	C	T	5.298e^-4	1	INTERGENIC
3L	3348697	3L_3348697_SNP [dm3] 3L_3348697_SNP [dm6]	G	T	5.317e^-4	1	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20987347	2R_20987347_DEL [dm3] 2R_25099824_DEL [dm6]	GCA	G	5.317e^-4	1	UPSTREAM lov INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24807487	3R_24807487_SNP [dm3] 3R_28981765_SNP [dm6]	T	G	5.327e^-4	1	INTERGENIC
3R	13447393	3R_13447393_SNP [dm3] 3R_17621671_SNP [dm6]	G	A	5.327e^-4	1	NON_SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3L	20938705	3L_20938705_INS [dm3] 3L_20945605_INS [dm6]	A	AGATACAAAATACAA...	5.327e^-4	1	INTRON fng
2R	7709565	2R_7709565_SNP [dm3] 2R_11822060_SNP [dm6]	A	G	5.365e^-4	1	INTERGENIC
3L	5832389	3L_5832389_SNP [dm3] 3L_5839289_SNP [dm6]	G	A	5.371e^-4	1	INTRON vn
2L	1971997	2L_1971997_SNP [dm3] 2L_1971997_SNP [dm6]	T	C	5.373e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
X	17647483	X_17647483_SNP [dm3] X_17753450_SNP [dm6]	T	G	5.376e^-4	1	INTERGENIC
X	4482607	X_4482607_SNP [dm3] X_4588574_SNP [dm6]	A	G	5.378e^-4	1	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14428812	3L_14428812_INS [dm3] 3L_14435712_INS [dm6]	A	ACACTAG	5.383e^-4	1	INTRON bbg
2L	5428905	2L_5428905_SNP [dm3] 2L_5428905_SNP [dm6]	A	T	5.403e^-4	1	INTERGENIC
2L	9787889	2L_9787889_SNP [dm3] 2L_9787889_SNP [dm6]	A	G	5.410e^-4	1	SYNONYMOUS_CODING IP3K1 EXON CR18854	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19314605	2L_19314605_SNP [dm3] 2L_19314605_SNP [dm6]	G	A	5.416e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7362752	2R_7362752_DEL [dm3] 2R_11475247_DEL [dm6]	AA	A	5.417e^-4	1	UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18689814	3R_18689814_INS [dm3] 3R_22864092_INS [dm6]	G	GCG	5.421e^-4	1	INTERGENIC
3R	14124239	3R_14124239_SNP [dm3] 3R_18298517_SNP [dm6]	G	A	5.427e^-4	1	START_GAINED l_3_05822 UTR_5_PRIME l_3_05822 UPSTREAM Dlc90F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12391359	3L_12391359_SNP [dm3] 3L_12398259_SNP [dm6]	T	G	5.429e^-4	1	SYNONYMOUS_CODING CG32104
3R	21476285	3R_21476285_INS [dm3] 3R_25650563_INS [dm6]	C	CATAGTATGC	5.454e^-4	1	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	1966406	3L_1966406_SNP [dm3] 3L_1966406_SNP [dm6]	G	T	5.461e^-4	1	SYNONYMOUS_CODING SCOT DOWNSTREAM CG1927	TF binding site mE1_TFBS_sens
3R	23867823	3R_23867823_SNP [dm3] 3R_28042101_SNP [dm6]	T	C	5.463e^-4	1	INTRON CG34362
2R	19877429	2R_19877429_SNP [dm3] 2R_23989906_SNP [dm6]	T	C	5.475e^-4	1	SYNONYMOUS_CODING Pask	TF binding site mE1_TFBS_chinmo
3L	2107865	3L_2107865_SNP [dm3] 3L_2107865_SNP [dm6]	C	G	5.506e^-4	1	INTRON sls	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2804983	3R_2804983_SNP [dm3] 3R_6979261_SNP [dm6]	C	T	5.513e^-4	1	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	12905107	X_12905107_SNP [dm3] X_13011074_SNP [dm6]	C	T	5.517e^-4	1	INTRON rad
3L	16483188	3L_16483188_SNP [dm3] 3L_16490088_SNP [dm6]	G	A	5.534e^-4	1	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	20123140	2L_20123140_SNP [dm3] 2L_20123140_SNP [dm6]	T	C	5.536e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	113521	3R_113521_SNP [dm3] 3R_4287799_SNP [dm6]	A	G	5.538e^-4	1	INTRON cpx
3L	5873084	3L_5873084_SNP [dm3] 3L_5879984_SNP [dm6]	A	T	5.546e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14194550	2R_14194550_SNP [dm3] 2R_18307045_SNP [dm6]	G	A	5.551e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	27031186	3R_27031186_SNP [dm3] 3R_31205464_SNP [dm6]	G	A	5.552e^-4	1	SYNONYMOUS_CODING chp	TF binding site mE1_TFBS_cad
3R	3863628	3R_3863628_SNP [dm3] 3R_8037906_SNP [dm6]	C	G	5.553e^-4	1	UPSTREAM CR44936 INTERGENIC
3R	18945292	3R_18945292_SNP [dm3] 3R_23119570_SNP [dm6]	A	G	5.557e^-4	1	INTRON CenB1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	558747	X_558747_SNP [dm3] X_664714_SNP [dm6]	T	C	5.561e^-4	1	INTERGENIC
X	559601	X_559601_SNP [dm3] X_665568_SNP [dm6]	C	T	5.561e^-4	1	INTERGENIC	transposable element FlyBase
3R	9131255	3R_9131255_SNP [dm3] 3R_13305533_SNP [dm6]	A	T	5.570e^-4	1	INTRON CG32473
3R	8650657	3R_8650657_SNP [dm3] 3R_12824935_SNP [dm6]	C	A	5.575e^-4	1	INTERGENIC
2L	4055655	2L_4055655_SNP [dm3] 2L_4055655_SNP [dm6]	T	G	5.576e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	13200147	3R_13200147_SNP [dm3] 3R_17374425_SNP [dm6]	T	C	5.581e^-4	1	DOWNSTREAM Brf INTERGENIC	TF binding site mE1_TFBS_inv
2R	8543188	2R_8543188_SNP [dm3] 2R_12655683_SNP [dm6]	G	A	5.584e^-4	1	UTR_3_PRIME ZnT49B UPSTREAM CG8646
2L	4790968	2L_4790968_SNP [dm3] 2L_4790968_SNP [dm6]	G	T	5.585e^-4	1	INTRON CG15630
2L	5428909	2L_5428909_SNP [dm3] 2L_5428909_SNP [dm6]	T	A	5.601e^-4	1	INTERGENIC
3R	16999231	3R_16999231_SNP [dm3] 3R_21173509_SNP [dm6]	A	T	5.615e^-4	1	INTRON SNF4Agamma
3L	8141498	3L_8141498_SNP [dm3] 3L_8148398_SNP [dm6]	C	T	5.624e^-4	1	INTRON CG13676
2L	13220076	2L_13220076_SNP [dm3] 2L_13220076_SNP [dm6]	A	G	5.626e^-4	1	UTR_5_PRIME CG5705 UPSTREAM CG9426	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2R	3366692	2R_3366692_SNP [dm3] 2R_7479187_SNP [dm6]	A	T	5.638e^-4	1	UTR_3_PRIME wech DOWNSTREAM wech	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	3541691	2L_3541691_SNP [dm3] 2L_3541691_SNP [dm6]	G	A	5.641e^-4	1	INTRON drm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19237556	2L_19237556_SNP [dm3] 2L_19237556_SNP [dm6]	T	G	5.656e^-4	1	INTERGENIC
X	14095212	X_14095212_SNP [dm3] X_14201179_SNP [dm6]	G	T	5.670e^-4	1	UPSTREAM l_1_G0007 DOWNSTREAM CG11590 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5385182	3R_5385182_SNP [dm3] 3R_9559460_SNP [dm6]	T	C	5.671e^-4	1	UTR_5_PRIME AP-1mu UPSTREAM MBD-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	4635502	3L_4635502_SNP [dm3] 3L_4635502_SNP [dm6]	A	T	5.680e^-4	1	UPSTREAM CG13716 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9734472	2R_9734472_SNP [dm3] 2R_13846967_SNP [dm6]	C	T	5.681e^-4	1	NON_SYNONYMOUS_CODING CG30484 UPSTREAM Syngr	TF binding site BDTNP1_TFBS_dl
3R	25325737	3R_25325737_SNP [dm3] 3R_29500015_SNP [dm6]	G	A	5.682e^-4	1	INTRON Trc8	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	7006004	X_7006004_SNP [dm3] X_7111971_SNP [dm6]	T	A	5.687e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2207816	3L_2207816_SNP [dm3] 3L_2207816_SNP [dm6]	G	A	5.693e^-4	1	INTERGENIC
3R	23722643	3R_23722643_SNP [dm3] 3R_27896921_SNP [dm6]	A	G	5.693e^-4	1	INTRON CG34353
2L	16524764	2L_16524764_INS [dm3] 2L_16524764_INS [dm6]	T	TT	5.703e^-4	1	INTRON CG5953
2R	18001625	2R_18001625_SNP [dm3] 2R_22114120_SNP [dm6]	C	T	5.704e^-4	1	SYNONYMOUS_CODING CG30280 UPSTREAM CG30281 INTRON Vrp1
3R	15639281	3R_15639281_SNP [dm3] 3R_19813559_SNP [dm6]	C	G	5.732e^-4	1	INTRON bnl
3R	3233860	3R_3233860_SNP [dm3] 3R_7408138_SNP [dm6]	G	A	5.733e^-4	1	INTRON Ir84a
2L	6511287	2L_6511287_SNP [dm3] 2L_6511287_SNP [dm6]	A	T	5.736e^-4	1	INTRON CG31637
X	20940209	X_20940209_SNP [dm3] X_21069182_SNP [dm6]	A	T	5.738e^-4	1	INTRON bves
2R	12982654	2R_12982654_INS [dm3] 2R_17095149_INS [dm6]	G	GCGTA	5.739e^-4	1	INTRON GstS1	TF binding site mE1_TFBS_cad
X	16918309	X_16918309_SNP [dm3] X_17024276_SNP [dm6]	C	A	5.740e^-4	1	DOWNSTREAM CG43996 & 1 other INTRON CG45002
2R	7570456	2R_7570456_SNP [dm3] 2R_11682951_SNP [dm6]	G	A	5.741e^-4	1	INTRON Buffy
2L	19261417	2L_19261417_SNP [dm3] 2L_19261417_SNP [dm6]	C	A	5.748e^-4	1	NON_SYNONYMOUS_CODING CG31797	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	23087229	3L_23087229_SNP [dm3] 3L_23094129_SNP [dm6]	T	C	5.795e^-4	1	INTRON RpL10
3R	18690241	3R_18690241_SNP [dm3] 3R_22864519_SNP [dm6]	G	T	5.798e^-4	1	INTERGENIC
3L	16554558	3L_16554558_SNP [dm3] 3L_16561458_SNP [dm6]	A	T	5.804e^-4	1	INTERGENIC
2L	15222594	2L_15222594_SNP [dm3] 2L_15222594_SNP [dm6]	C	T	5.808e^-4	1	INTERGENIC
X	17648417	X_17648417_SNP [dm3] X_17754384_SNP [dm6]	A	T	5.821e^-4	1	INTERGENIC
3R	22090046	3R_22090046_SNP [dm3] 3R_26264324_SNP [dm6]	A	G	5.822e^-4	1	INTRON CG6154
3L	21408319	3L_21408319_SNP [dm3] 3L_21415219_SNP [dm6]	T	C	5.831e^-4	1	INTRON rgn
2L	19264789	2L_19264789_DEL [dm3] 2L_19264789_DEL [dm6]	AGTGATCGA	A	5.836e^-4	1	INTERGENIC
2R	7362755	2R_7362755_SNP [dm3] 2R_11475250_SNP [dm6]	G	A	5.843e^-4	1	UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15233165	3R_15233165_SNP [dm3] 3R_19407443_SNP [dm6]	G	A	5.851e^-4	1	INTERGENIC
X	21288625	X_21288625_SNP [dm3] X_21417598_SNP [dm6]	C	T	5.876e^-4	1	INTERGENIC
3R	23867884	3R_23867884_SNP [dm3] 3R_28042162_SNP [dm6]	T	A	5.879e^-4	1	INTRON CG34362
3L	8452089	3L_8452089_SNP [dm3] 3L_8458989_SNP [dm6]	G	C	5.898e^-4	1	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23728856	3R_23728856_SNP [dm3] 3R_27903134_SNP [dm6]	G	A	5.899e^-4	1	INTRON CG34353
2L	8769523	2L_8769523_SNP [dm3] 2L_8769523_SNP [dm6]	G	T	5.925e^-4	1	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
2R	17499911	2R_17499911_DEL [dm3] 2R_21612406_DEL [dm6]	GAACGTTTAATAATATTTAT...	G	5.926e^-4	1	INTRON CG15673
X	12908343	X_12908343_SNP [dm3] X_13014310_SNP [dm6]	C	T	5.933e^-4	1	INTRON rad
3R	17882946	3R_17882946_SNP [dm3] 3R_22057224_SNP [dm6]	G	T	5.942e^-4	1	INTRON how
2L	19639279	2L_19639279_SNP [dm3] 2L_19639279_SNP [dm6]	C	T	5.944e^-4	1	INTRON Lar
X	559811	X_559811_SNP [dm3] X_665778_SNP [dm6]	C	G	5.970e^-4	1	INTERGENIC
2L	3568472	2L_3568472_SNP [dm3] 2L_3568472_SNP [dm6]	T	A	5.986e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	14344794	2L_14344794_SNP [dm3] 2L_14344794_SNP [dm6]	G	C	5.989e^-4	1	NON_SYNONYMOUS_CODING CG33090	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3244823	3R_3244823_SNP [dm3] 3R_7419101_SNP [dm6]	A	T	5.997e^-4	1	INTRON CG31544
2L	13288657	2L_13288657_SNP [dm3] 2L_13288657_SNP [dm6]	G	A	6.007e^-4	1	INTRON Uvrag EXON CR44972
3R	3245209	3R_3245209_SNP [dm3] 3R_7419487_SNP [dm6]	G	T	6.019e^-4	1	NON_SYNONYMOUS_CODING CG31544 UPSTREAM CG34023
2R	16860077	2R_16860077_SNP [dm3] 2R_20972572_SNP [dm6]	C	A	6.028e^-4	1	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11797185	2L_11797185_SNP [dm3] 2L_11797185_SNP [dm6]	A	G	6.029e^-4	1	SYNONYMOUS_CODING crol DOWNSTREAM snoRNA:Me18S-A934	TF binding site mE1_TFBS_cad
2R	6188314	2R_6188314_SNP [dm3] 2R_10300809_SNP [dm6]	A	C	6.036e^-4	1	UPSTREAM CAP INTRON CAP
X	559271	X_559271_SNP [dm3] X_665238_SNP [dm6]	A	T	6.043e^-4	1	INTERGENIC
3R	24306951	3R_24306951_SNP [dm3] 3R_28481229_SNP [dm6]	C	A	6.050e^-4	1	INTERGENIC
X	18878027	X_18878027_SNP [dm3] X_18983994_SNP [dm6]	T	C	6.053e^-4	1	INTRON CG43759
3L	20213474	3L_20213474_SNP [dm3] 3L_20220374_SNP [dm6]	C	T	6.060e^-4	1	UTR_5_PRIME CG6933 UPSTREAM CG6933
2L	14344797	2L_14344797_SNP [dm3] 2L_14344797_SNP [dm6]	G	C	6.060e^-4	1	NON_SYNONYMOUS_CODING CG33090	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19196653	3R_19196653_SNP [dm3] 3R_23370931_SNP [dm6]	T	A	6.065e^-4	1	INTERGENIC
3R	24382543	3R_24382543_SNP [dm3] 3R_28556821_SNP [dm6]	C	A	6.072e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7303509	2L_7303509_SNP [dm3] 2L_7303509_SNP [dm6]	G	A	6.084e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14540293	2L_14540293_SNP [dm3] 2L_14540293_SNP [dm6]	A	G	6.091e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7611992	3L_7611992_SNP [dm3] 3L_7618892_SNP [dm6]	T	A	6.095e^-4	1	INTRON CG33275
2R	7711079	2R_7711079_SNP [dm3] 2R_11823574_SNP [dm6]	C	A	6.100e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4136137	2L_4136137_SNP [dm3] 2L_4136137_SNP [dm6]	C	G	6.100e^-4	1	INTERGENIC
X	13907520	X_13907520_INS [dm3] X_14013487_INS [dm6]	T	TA	6.103e^-4	1	INTERGENIC
3R	15236479	3R_15236479_SNP [dm3] 3R_19410757_SNP [dm6]	C	A	6.108e^-4	1	UTR_3_PRIME CG11626
3R	25211857	3R_25211857_SNP [dm3] 3R_29386135_SNP [dm6]	C	T	6.111e^-4	1	INTRON Ptp99A
X	558742	X_558742_SNP [dm3] X_664709_SNP [dm6]	C	A	6.126e^-4	1	INTERGENIC
3R	5751167	3R_5751167_SNP [dm3] 3R_9925445_SNP [dm6]	C	T	6.129e^-4	1	INTRON Glut4EF	TF binding site mE1_TFBS_cad
2R	12445351	2R_12445351_SNP [dm3] 2R_16557846_SNP [dm6]	A	T	6.129e^-4	1	UTR_3_PRIME Syn2 DOWNSTREAM Syn2 & 1 other
X	20612755	X_20612755_SNP [dm3] X_20741728_SNP [dm6]	T	C	6.132e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	16044946	3R_16044946_SNP [dm3] 3R_20219224_SNP [dm6]	A	C	6.142e^-4	1	INTRON Nlg4
X	19179116	X_19179116_SNP [dm3] X_19285083_SNP [dm6]	A	T	6.143e^-4	1	UPSTREAM CG8034 INTRON CG8034
2R	16993009	2R_16993009_SNP [dm3] 2R_21105504_SNP [dm6]	A	G	6.145e^-4	1	INTRON ktub	TF binding site mE1_TFBS_inv
2L	19243643	2L_19243643_SNP [dm3] 2L_19243643_SNP [dm6]	C	T	6.146e^-4	1	INTERGENIC
X	14213841	X_14213841_SNP [dm3] X_14319808_SNP [dm6]	G	T	6.154e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	16860059	2R_16860059_SNP [dm3] 2R_20972554_SNP [dm6]	C	T	6.157e^-4	1	DOWNSTREAM CG15649 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24307388	3R_24307388_DEL [dm3] 3R_28481666_DEL [dm6]	CAGGAGGAGGAGC...	C	6.161e^-4	1	INTERGENIC
3L	9211389	3L_9211389_SNP [dm3] 3L_9218289_SNP [dm6]	C	T	6.179e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	10875887	2L_10875887_SNP [dm3] 2L_10875887_SNP [dm6]	G	T	6.194e^-4	1	INTERGENIC
2L	16269678	2L_16269678_SNP [dm3] 2L_16269678_SNP [dm6]	C	A	6.199e^-4	1	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	12794791	3L_12794791_SNP [dm3] 3L_12801691_SNP [dm6]	C	G	6.201e^-4	1	INTRON Atg1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15942806	3L_15942806_SNP [dm3] 3L_15949706_SNP [dm6]	G	C	6.207e^-4	1	INTRON Pka-C3
3L	9761501	3L_9761501_SNP [dm3] 3L_9768401_SNP [dm6]	A	T	6.238e^-4	1	INTRON CG8177
3L	665734	3L_665734_SNP [dm3] 3L_665734_SNP [dm6]	C	T	6.249e^-4	1	INTERGENIC
3R	21456473	3R_21456473_SNP [dm3] 3R_25630751_SNP [dm6]	T	G	6.263e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13489175	2L_13489175_SNP [dm3] 2L_13489175_SNP [dm6]	T	C	6.265e^-4	1	INTRON CG42784	TF binding site BDTNP1_TFBS_dl
2R	14196246	2R_14196246_SNP [dm3] 2R_18308741_SNP [dm6]	C	A	6.270e^-4	1	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
3L	4673696	3L_4673696_SNP [dm3] 3L_4673696_SNP [dm6]	T	C	6.296e^-4	1	INTRON axo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12647821	3R_12647821_SNP [dm3] 3R_16822099_SNP [dm6]	A	T	6.303e^-4	1	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	23083505	3L_23083505_SNP [dm3] 3L_23090405_SNP [dm6]	T	A	6.309e^-4	1	INTERGENIC	transposable element FlyBase
3R	4224137	3R_4224137_SNP [dm3] 3R_8398415_SNP [dm6]	C	A	6.310e^-4	1	INTRON CG45263
3L	14504974	3L_14504974_SNP [dm3] 3L_14511874_SNP [dm6]	T	C	6.314e^-4	1	NON_SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_sens
3R	2806555	3R_2806555_SNP [dm3] 3R_6980833_SNP [dm6]	G	C	6.325e^-4	1	INTRON Antp
X	11473872	X_11473872_SNP [dm3] X_11579839_SNP [dm6]	G	C	6.329e^-4	1	UPSTREAM nod EXON roX2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2799345	3R_2799345_SNP [dm3] 3R_6973623_SNP [dm6]	G	T	6.340e^-4	1	INTRON Antp	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	7364533	2R_7364533_SNP [dm3] 2R_11477028_SNP [dm6]	C	T	6.348e^-4	1	SYNONYMOUS_CODING inv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	7283434	3L_7283434_SNP [dm3] 3L_7290334_SNP [dm6]	G	T	6.354e^-4	1	INTRON unc-13-4A
X	13206316	X_13206316_SNP [dm3] X_13312283_SNP [dm6]	G	A	6.386e^-4	1	INTRON IP3K2
2L	19263431	2L_19263431_SNP [dm3] 2L_19263431_SNP [dm6]	C	T	6.395e^-4	1	DOWNSTREAM CR44191 INTERGENIC
3R	21456433	3R_21456433_SNP [dm3] 3R_25630711_SNP [dm6]	A	C	6.402e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	21002071	2R_21002071_SNP [dm3] 2R_25114548_SNP [dm6]	C	A	6.407e^-4	1	INTRON lov	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1974392	3L_1974392_SNP [dm3] 3L_1974392_SNP [dm6]	G	A	6.410e^-4	1	DOWNSTREAM CG1139 INTERGENIC
3R	23867895	3R_23867895_SNP [dm3] 3R_28042173_SNP [dm6]	A	G	6.413e^-4	1	INTRON CG34362
3R	23867886	3R_23867886_SNP [dm3] 3R_28042164_SNP [dm6]	C	T	6.414e^-4	1	INTRON CG34362
2L	19247476	2L_19247476_SNP [dm3] 2L_19247476_SNP [dm6]	A	T	6.416e^-4	1	INTERGENIC
2R	17251354	2R_17251354_SNP [dm3] 2R_21363849_SNP [dm6]	G	A	6.424e^-4	1	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21462088	3R_21462088_INS [dm3] 3R_25636366_INS [dm6]	C	CGCC	6.429e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4717264	2L_4717264_SNP [dm3] 2L_4717264_SNP [dm6]	A	T	6.444e^-4	1	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6916361	3R_6916361_SNP [dm3] 3R_11090639_SNP [dm6]	C	T	6.462e^-4	1	INTERGENIC
2L	15144939	2L_15144939_SNP [dm3] 2L_15144939_SNP [dm6]	T	G	6.473e^-4	1	INTERGENIC
3R	4032163	3R_4032163_SNP [dm3] 3R_8206441_SNP [dm6]	C	T	6.476e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16531273	3L_16531273_DEL [dm3] 3L_16538173_DEL [dm6]	ATGAA	A	6.477e^-4	1	INTRON CG43373
3R	23722852	3R_23722852_DEL [dm3] 3R_27897130_DEL [dm6]	AACA	A	6.479e^-4	1	INTRON CG34353
2R	10111065	2R_10111065_SNP [dm3] 2R_14223560_SNP [dm6]	T	C	6.482e^-4	1	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2R	7579426	2R_7579426_SNP [dm3] 2R_11691921_SNP [dm6]	C	T	6.485e^-4	1	INTRON CG13197
3R	15233265	3R_15233265_SNP [dm3] 3R_19407543_SNP [dm6]	A	G	6.493e^-4	1	INTERGENIC
2R	6264056	2R_6264056_SNP [dm3] 2R_10376551_SNP [dm6]	T	C	6.504e^-4	1	DOWNSTREAM Ir47a INTRON CG42732 EXON Ir47b
X	22039556	X_22039556_SNP [dm3] X_22637720_SNP [dm6]	G	C	6.508e^-4	1	INTERGENIC
2L	18940673	2L_18940673_INS [dm3] 2L_18940673_INS [dm6]	T	TTTAAAAC	6.519e^-4	1	INTRON ssp3	TF binding site mE1_TFBS_cad
3R	14330225	3R_14330225_INS [dm3] 3R_18504503_INS [dm6]	A	ACCT	6.520e^-4	1	UPSTREAM fru INTRON fru
3R	14330227	3R_14330227_SNP [dm3] 3R_18504505_SNP [dm6]	G	A	6.520e^-4	1	UPSTREAM fru INTRON fru
3L	9932003	3L_9932003_SNP [dm3] 3L_9938903_SNP [dm6]	C	A	6.526e^-4	1	INTRON CG34356
2R	13430853	2R_13430853_SNP [dm3] 2R_17543348_SNP [dm6]	C	T	6.538e^-4	1	SYNONYMOUS_CODING CG43370 UPSTREAM CG34194	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6333304	3L_6333304_SNP [dm3] 3L_6340204_SNP [dm6]	A	G	6.564e^-4	1	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
3R	15245784	3R_15245784_SNP [dm3] 3R_19420062_SNP [dm6]	T	A	6.578e^-4	1	INTRON CG31221
3L	8408576	3L_8408576_SNP [dm3] 3L_8415476_SNP [dm6]	A	G	6.587e^-4	1	DOWNSTREAM CG32354 INTRON Exo70
2R	7386298	2R_7386298_DEL [dm3] 2R_11498793_DEL [dm6]	TTCGATTCGACA...	T	6.591e^-4	1	INTRON inv	TF binding site mE1_TFBS_inv
2L	19250429	2L_19250429_SNP [dm3] 2L_19250429_SNP [dm6]	G	T	6.592e^-4	1	INTERGENIC
3R	4225439	3R_4225439_DEL [dm3] 3R_8399717_DEL [dm6]	TA	T	6.593e^-4	1	INTRON CG45263
2R	10771092	2R_10771092_SNP [dm3] 2R_14883587_SNP [dm6]	G	A	6.595e^-4	1	NON_SYNONYMOUS_CODING Cyp6a20
2R	7084593	2R_7084593_SNP [dm3] 2R_11197088_SNP [dm6]	C	T	6.613e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	1388039	3L_1388039_SNP [dm3] 3L_1388039_SNP [dm6]	T	A	6.617e^-4	1	DOWNSTREAM ru INTRON Ptp61F
2R	9432464	2R_9432464_SNP [dm3] 2R_13544959_SNP [dm6]	G	A	6.636e^-4	1	INTRON CG6145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc
3L	10142851	3L_10142851_SNP [dm3] 3L_10149751_SNP [dm6]	G	A	6.648e^-4	1	INTRON dpr10
3R	15180748	3R_15180748_SNP [dm3] 3R_19355026_SNP [dm6]	T	C	6.649e^-4	1	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	6100416	2R_6100416_SNP [dm3] 2R_10212911_SNP [dm6]	T	A	6.649e^-4	1	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
X	9880149	X_9880149_SNP [dm3] X_9986116_SNP [dm6]	G	A	6.653e^-4	1	INTERGENIC
3R	24307073	3R_24307073_SNP [dm3] 3R_28481351_SNP [dm6]	G	A	6.666e^-4	1	INTERGENIC
2L	9506469	2L_9506469_SNP [dm3] 2L_9506469_SNP [dm6]	A	C	6.669e^-4	1	INTRON CG33298
2L	8248051	2L_8248051_SNP [dm3] 2L_8248051_SNP [dm6]	T	G	6.680e^-4	1	SYNONYMOUS_CODING CG8086 INTRON CG8086	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	24701248	3R_24701248_SNP [dm3] 3R_28875526_SNP [dm6]	C	G	6.681e^-4	1	UPSTREAM CG14528 DOWNSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad
X	4260932	X_4260932_SNP [dm3] X_4366899_SNP [dm6]	C	T	6.691e^-4	1	SYNONYMOUS_CODING CG3626 UPSTREAM mir-303	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18119112	3R_18119112_SNP [dm3] 3R_22293390_SNP [dm6]	G	A	6.692e^-4	1	DOWNSTREAM mir-1010 INTRON SKIP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3215464	X_3215464_SNP [dm3] X_3321431_SNP [dm6]	G	A	6.697e^-4	1	INTRON CR44886 & 1 other
3R	16981541	3R_16981541_SNP [dm3] 3R_21155819_SNP [dm6]	T	C	6.709e^-4	1	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	4965481	X_4965481_SNP [dm3] X_5071448_SNP [dm6]	T	C	6.711e^-4	1	UTR_3_PRIME CG32767 DOWNSTREAM ovo
3L	7726547	3L_7726547_SNP [dm3] 3L_7733447_SNP [dm6]	A	T	6.725e^-4	1	UTR_3_PRIME Snmp2 INTRON CG32373
3R	9443570	3R_9443570_SNP [dm3] 3R_13617848_SNP [dm6]	T	C	6.727e^-4	1	EXON CR45680
X	16891365	X_16891365_SNP [dm3] X_16997332_SNP [dm6]	G	C	6.732e^-4	1	INTRON CG45002
2R	9863509	2R_9863509_SNP [dm3] 2R_13976004_SNP [dm6]	T	G	6.732e^-4	1	SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5712386	X_5712386_SNP [dm3] X_5818353_SNP [dm6]	T	G	6.734e^-4	1	UPSTREAM CG15765 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5219433	2L_5219433_SNP [dm3] 2L_5219433_SNP [dm6]	A	T	6.741e^-4	1	UTR_3_PRIME tkv DOWNSTREAM TpnC25D
3R	3147364	3R_3147364_SNP [dm3] 3R_7321642_SNP [dm6]	A	T	6.749e^-4	1	INTERGENIC
2R	16493500	2R_16493500_SNP [dm3] 2R_20605995_SNP [dm6]	C	A	6.759e^-4	1	UPSTREAM mir-7 DOWNSTREAM Hil & 1 other INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19849516	2R_19849516_SNP [dm3] 2R_23961993_SNP [dm6]	C	T	6.760e^-4	1	UPSTREAM Fmo-1 DOWNSTREAM alpha-catenin-related INTRON CG13566
3R	24559412	3R_24559412_SNP [dm3] 3R_28733690_SNP [dm6]	C	T	6.762e^-4	1	UTR_3_PRIME htt	TF binding site mE1_TFBS_chinmo
2R	12577024	2R_12577024_SNP [dm3] 2R_16689519_SNP [dm6]	A	C	6.765e^-4	1	INTRON CG30463
2R	16995215	2R_16995215_SNP [dm3] 2R_21107710_SNP [dm6]	C	T	6.768e^-4	1	INTRON ktub
3R	15181082	3R_15181082_SNP [dm3] 3R_19355360_SNP [dm6]	G	A	6.769e^-4	1	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	19336223	2L_19336223_SNP [dm3] 2L_19336223_SNP [dm6]	G	T	6.770e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16085500	2L_16085500_SNP [dm3] 2L_16085500_SNP [dm6]	G	A	6.774e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	5770529	3R_5770529_SNP [dm3] 3R_9944807_SNP [dm6]	G	A	6.775e^-4	1	UTR_3_PRIME Glut4EF INTRON Glut4EF
2R	7710420	2R_7710420_SNP [dm3] 2R_11822915_SNP [dm6]	T	G	6.784e^-4	1	INTERGENIC
3L	7726794	3L_7726794_SNP [dm3] 3L_7733694_SNP [dm6]	C	T	6.785e^-4	1	SYNONYMOUS_CODING Snmp2 INTRON CG32373
2L	19264764	2L_19264764_SNP [dm3] 2L_19264764_SNP [dm6]	C	T	6.786e^-4	1	INTERGENIC
2L	5482390	2L_5482390_SNP [dm3] 2L_5482390_SNP [dm6]	T	G	6.793e^-4	1	INTERGENIC
2L	4315600	2L_4315600_SNP [dm3] 2L_4315600_SNP [dm6]	C	T	6.793e^-4	1	UTR_3_PRIME tutl INTRON tutl
3R	16742828	3R_16742828_SNP [dm3] 3R_20917106_SNP [dm6]	T	C	6.794e^-4	1	INTRON CG31191 & 1 other
X	20612742	X_20612742_INS [dm3] X_20741715_INS [dm6]	T	TGAAAA	6.796e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	15138171	2L_15138171_SNP [dm3] 2L_15138171_SNP [dm6]	G	A	6.797e^-4	1	INTERGENIC
2R	17415421	2R_17415421_DEL [dm3] 2R_21527916_DEL [dm6]	CT	C	6.804e^-4	1	INTRON Egfr
2L	4746227	2L_4746227_SNP [dm3] 2L_4746227_SNP [dm6]	A	G	6.809e^-4	1	INTRON CG15630
X	570715	X_570715_SNP [dm3] X_676682_SNP [dm6]	G	C	6.842e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	16610003	2L_16610003_SNP [dm3] 2L_16610003_SNP [dm6]	A	T	6.845e^-4	1	UTR_3_PRIME CG4631 INTRON CG42389
2L	4133920	2L_4133920_INS [dm3] 2L_4133920_INS [dm6]	A	AGCC	6.848e^-4	1	INTERGENIC
2R	7088602	2R_7088602_SNP [dm3] 2R_11201097_SNP [dm6]	A	T	6.848e^-4	1	INTRON shn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
X	14517141	X_14517141_SNP [dm3] X_14623108_SNP [dm6]	G	C	6.851e^-4	1	INTRON NetA
3L	10616448	3L_10616448_SNP [dm3] 3L_10623348_SNP [dm6]	G	A	6.854e^-4	1	SYNONYMOUS_CODING CG42521
2R	12554267	2R_12554267_SNP [dm3] 2R_16666762_SNP [dm6]	G	T	6.857e^-4	1	INTRON Picot
2R	12554270	2R_12554270_SNP [dm3] 2R_16666765_SNP [dm6]	T	C	6.857e^-4	1	INTRON Picot
2R	15266716	2R_15266716_SNP [dm3] 2R_19379211_SNP [dm6]	T	G	6.867e^-4	1	INTRON CG10062
2L	3193355	2L_3193355_SNP [dm3] 2L_3193355_SNP [dm6]	C	A	6.869e^-4	1	INTRON CG34393
3L	5213576	3L_5213576_SNP [dm3] 3L_5220476_SNP [dm6]	T	C	6.869e^-4	1	INTRON shep
X	18623308	X_18623308_SNP [dm3] X_18729275_SNP [dm6]	A	G	6.890e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25700668	3R_25700668_SNP [dm3] 3R_29874946_SNP [dm6]	T	C	6.896e^-4	1	UTR_3_PRIME CG34133 DOWNSTREAM CG34133
2R	8557413	2R_8557413_SNP [dm3] 2R_12669908_SNP [dm6]	A	G	6.896e^-4	1	UTR_5_PRIME nemy DOWNSTREAM CG42708	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
X	698894	X_698894_SNP [dm3] X_804861_SNP [dm6]	G	A	6.898e^-4	1	NON_SYNONYMOUS_CODING CG13358	TF binding site mE1_TFBS_chinmo
3R	22725831	3R_22725831_INS [dm3] 3R_26900109_INS [dm6]	C	CG	6.898e^-4	1	INTRON T48	regulatory region REDfly_CRMs
3R	22725833	3R_22725833_DEL [dm3] 3R_26900111_DEL [dm6]	GCT	G	6.898e^-4	1	INTRON T48	regulatory region REDfly_CRMs
2R	12967865	2R_12967865_SNP [dm3] 2R_17080360_SNP [dm6]	G	A	6.904e^-4	1	INTRON CG30460
3R	3583559	3R_3583559_SNP [dm3] 3R_7757837_SNP [dm6]	A	G	6.911e^-4	1	UPSTREAM CG10919 INTERGENIC
3R	15639351	3R_15639351_SNP [dm3] 3R_19813629_SNP [dm6]	A	G	6.913e^-4	1	INTRON bnl
3L	8899355	3L_8899355_SNP [dm3] 3L_8906255_SNP [dm6]	A	G	6.921e^-4	1	SPLICE_SITE_REGION mfr INTRON mfr
2L	4791310	2L_4791310_SNP [dm3] 2L_4791310_SNP [dm6]	A	G	6.926e^-4	1	INTRON CG15630
2L	5105160	2L_5105160_SNP [dm3] 2L_5105160_SNP [dm6]	A	G	6.927e^-4	1	INTRON Msp300
3R	16981512	3R_16981512_SNP [dm3] 3R_21155790_SNP [dm6]	T	C	6.936e^-4	1	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	14095301	X_14095301_INS [dm3] X_14201268_INS [dm6]	T	TTTGATATATTTAAAGAATG...	6.939e^-4	1	UPSTREAM l_1_G0007 DOWNSTREAM CG11590 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9506657	2L_9506657_SNP [dm3] 2L_9506657_SNP [dm6]	C	A	6.943e^-4	1	INTRON CG33298
2L	19884610	2L_19884610_SNP [dm3] 2L_19884610_SNP [dm6]	A	C	6.943e^-4	1	INTRON sick
2L	4130135	2L_4130135_SNP [dm3] 2L_4130135_SNP [dm6]	T	A	6.946e^-4	1	INTERGENIC
3R	5739943	3R_5739943_SNP [dm3] 3R_9914221_SNP [dm6]	G	T	6.955e^-4	1	INTRON Glut4EF
3R	16726306	3R_16726306_SNP [dm3] 3R_20900584_SNP [dm6]	C	T	6.958e^-4	1	INTERGENIC
X	557885	X_557885_SNP [dm3] X_663852_SNP [dm6]	A	T	6.966e^-4	1	INTERGENIC
2L	3348629	2L_3348629_SNP [dm3] 2L_3348629_SNP [dm6]	T	C	6.977e^-4	1	INTRON E23
X	12294502	X_12294502_INS [dm3] X_12400469_INS [dm6]	C	CTGCGAC	6.985e^-4	1	INTERGENIC
3R	20331581	3R_20331581_SNP [dm3] 3R_24505859_SNP [dm6]	C	G	6.989e^-4	1	INTERGENIC
2L	2343207	2L_2343207_SNP [dm3] 2L_2343207_SNP [dm6]	A	T	6.990e^-4	1	INTRON CG9967 & 1 other
3L	10353366	3L_10353366_SNP [dm3] 3L_10360266_SNP [dm6]	C	T	7.002e^-4	1	EXON CR44327	TF binding site mE1_TFBS_cad
3R	6882395	3R_6882395_SNP [dm3] 3R_11056673_SNP [dm6]	C	T	7.002e^-4	1	INTERGENIC
3R	18380206	3R_18380206_SNP [dm3] 3R_22554484_SNP [dm6]	G	A	7.007e^-4	1	UPSTREAM bond INTRON bond
2R	18873095	2R_18873095_SNP [dm3] 2R_22985572_SNP [dm6]	G	T	7.011e^-4	1	SYNONYMOUS_CODING CG9897 UTR_5_PRIME twi UTR_3_PRIME CG9897 UPSTREAM mir-4939 & 1 other EXON CR42742
3L	10128545	3L_10128545_SNP [dm3] 3L_10135445_SNP [dm6]	T	A	7.015e^-4	1	INTRON dpr6
2R	6264606	2R_6264606_SNP [dm3] 2R_10377101_SNP [dm6]	C	T	7.027e^-4	1	DOWNSTREAM Ir47a INTRON CG42732 EXON Ir47b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10128554	3L_10128554_SNP [dm3] 3L_10135454_SNP [dm6]	G	A	7.052e^-4	1	INTRON dpr6	TF binding site mE1_TFBS_chinmo
3R	14974488	3R_14974488_SNP [dm3] 3R_19148766_SNP [dm6]	C	T	7.056e^-4	1	UTR_3_PRIME CG5835 UPSTREAM Ppcs & 1 other	TF binding site mE1_TFBS_HSA
2R	11489128	2R_11489128_SNP [dm3] 2R_15601623_SNP [dm6]	A	G	7.065e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18404945	2R_18404945_SNP [dm3] 2R_22517440_SNP [dm6]	C	T	7.066e^-4	1	INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10378788	3R_10378788_SNP [dm3] 3R_14553066_SNP [dm6]	G	T	7.072e^-4	1	INTRON Pde6
3R	4935197	3R_4935197_INS [dm3] 3R_9109475_INS [dm6]	A	ATA	7.087e^-4	1	INTRON pum
2L	1032579	2L_1032579_SNP [dm3] 2L_1032579_SNP [dm6]	C	T	7.092e^-4	1	INTRON IA-2
3R	14085029	3R_14085029_SNP [dm3] 3R_18259307_SNP [dm6]	A	T	7.098e^-4	1	INTERGENIC	transposable element FlyBase
2L	19314124	2L_19314124_SNP [dm3] 2L_19314124_SNP [dm6]	G	A	7.099e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14554347	2L_14554347_SNP [dm3] 2L_14554347_SNP [dm6]	G	A	7.102e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	1057388	3L_1057388_SNP [dm3] 3L_1057388_SNP [dm6]	T	C	7.114e^-4	1	INTRON bab1
2R	19463381	2R_19463381_SNP [dm3] 2R_23575858_SNP [dm6]	C	T	7.134e^-4	1	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19266617	2L_19266617_SNP [dm3] 2L_19266617_SNP [dm6]	T	G	7.142e^-4	1	INTERGENIC
2R	13663633	2R_13663633_SNP [dm3] 2R_17776128_SNP [dm6]	C	A	7.143e^-4	1	INTRON fab1 & 1 other	TF binding site mE1_TFBS_cad
3R	25344913	3R_25344913_SNP [dm3] 3R_29519191_SNP [dm6]	C	G	7.146e^-4	1	INTERGENIC
X	2411129	X_2411129_SNP [dm3] X_2517096_SNP [dm6]	G	A	7.154e^-4	1	INTRON trol
3R	14090014	3R_14090014_SNP [dm3] 3R_18264292_SNP [dm6]	C	A	7.181e^-4	1	INTERGENIC
2R	12439441	2R_12439441_SNP [dm3] 2R_16551936_SNP [dm6]	A	G	7.187e^-4	1	UPSTREAM Syn2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7727377	3L_7727377_SNP [dm3] 3L_7734277_SNP [dm6]	T	A	7.198e^-4	1	INTRON CG32373 & 1 other
3L	9932029	3L_9932029_SNP [dm3] 3L_9938929_SNP [dm6]	G	T	7.199e^-4	1	INTRON CG34356
2L	4371722	2L_4371722_SNP [dm3] 2L_4371722_SNP [dm6]	A	C	7.218e^-4	1	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	14566904	2L_14566904_SNP [dm3] 2L_14566904_SNP [dm6]	C	T	7.228e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13291628	2L_13291628_SNP [dm3] 2L_13291628_SNP [dm6]	G	A	7.228e^-4	1	INTRON CG31729	TF binding site mE1_TFBS_HSA
2R	11436990	2R_11436990_SNP [dm3] 2R_15549485_SNP [dm6]	C	A	7.232e^-4	1	INTRON CG8192	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

sd_Lifespan_Env_28 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results