DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.226e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1973 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	6275408	2R_6275408_SNP [dm3] 2R_10387903_SNP [dm6]	G	T	1.751e^-6	0.718	INTRON CG42732
3L	1975229	3L_1975229_SNP [dm3] 3L_1975229_SNP [dm6]	G	A	1.832e^-6	0.718	DOWNSTREAM CG1139 INTERGENIC
3L	13583477	3L_13583477_SNP [dm3] 3L_13590377_SNP [dm6]	A	G	2.103e^-6	0.718	INTRON bru-3
3R	17993765	3R_17993765_SNP [dm3] 3R_22168043_SNP [dm6]	A	G	2.275e^-6	0.718	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	6155137	2R_6155137_SNP [dm3] 2R_10267632_SNP [dm6]	T	G	2.491e^-6	0.718	INTRON CG12910
3L	10188286	3L_10188286_SNP [dm3] 3L_10195186_SNP [dm6]	C	T	2.509e^-6	0.718	INTRON ect
X	611059	X_611059_SNP [dm3] X_717026_SNP [dm6]	G	A	3.734e^-6	0.718	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2045569	3L_2045569_SNP [dm3] 3L_2045569_SNP [dm6]	A	G	4.332e^-6	0.718	SYNONYMOUS_CODING sls INTRON sls
X	8211850	X_8211850_SNP [dm3] X_8317817_SNP [dm6]	C	T	4.894e^-6	0.718	INTRON nAChRalpha3
X	620144	X_620144_SNP [dm3] X_726111_SNP [dm6]	G	A	5.886e^-6	0.718	INTRON sdk
3L	14076367	3L_14076367_SNP [dm3] 3L_14083267_SNP [dm6]	A	G	6.036e^-6	0.718	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
3R	27249398	3R_27249398_SNP [dm3] 3R_31423676_SNP [dm6]	C	A	6.074e^-6	0.718	INTRON Gprk2
2R	6733794	2R_6733794_SNP [dm3] 2R_10846289_SNP [dm6]	G	C	6.479e^-6	0.718	INTRON CG30015	TF binding site mE1_TFBS_cad
3L	7422298	3L_7422298_SNP [dm3] 3L_7429198_SNP [dm6]	T	A	7.220e^-6	0.718	INTRON CG42458
3R	10124374	3R_10124374_SNP [dm3] 3R_14298652_SNP [dm6]	A	T	7.525e^-6	0.718	UTR_5_PRIME CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6173826	3L_6173826_SNP [dm3] 3L_6180726_SNP [dm6]	A	T	7.757e^-6	0.718	NON_SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5358891	X_5358891_SNP [dm3] X_5464858_SNP [dm6]	G	C	7.832e^-6	0.718	UTR_5_PRIME SPR INTRON SPR
X	616267	X_616267_DEL [dm3] X_722234_DEL [dm6]	ACC	T	8.517e^-6	0.718	INTRON sdk
2L	9087332	2L_9087332_SNP [dm3] 2L_9087332_SNP [dm6]	G	T	8.541e^-6	0.718	NON_SYNONYMOUS_CODING Toll-4
2R	6275262	2R_6275262_SNP [dm3] 2R_10387757_SNP [dm6]	A	T	8.564e^-6	0.718	INTRON CG42732
X	5358881	X_5358881_SNP [dm3] X_5464848_SNP [dm6]	C	G	9.867e^-6	0.718	UTR_5_PRIME SPR INTRON SPR
2L	9086844	2L_9086844_SNP [dm3] 2L_9086844_SNP [dm6]	A	G	1.108e^-5	0.718	NON_SYNONYMOUS_CODING Toll-4
X	8164713	X_8164713_SNP [dm3] X_8270680_SNP [dm6]	A	T	1.155e^-5	0.718	NON_SYNONYMOUS_CODING Corp INTRON CG1632	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6174022	3L_6174022_SNP [dm3] 3L_6180922_SNP [dm6]	G	A	1.191e^-5	0.718	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19196185	2R_19196185_SNP [dm3] 2R_23308662_SNP [dm6]	C	T	1.203e^-5	0.718	UTR_3_PRIME Prosbeta5R1
X	532593	X_532593_SNP [dm3] X_638560_SNP [dm6]	A	T	1.244e^-5	0.718	NON_SYNONYMOUS_CODING su_s_
2R	16396804	2R_16396804_SNP [dm3] 2R_20509299_SNP [dm6]	G	A	1.253e^-5	0.718	UPSTREAM CR44647 DOWNSTREAM CR44646 INTERGENIC	TF binding site mE1_TFBS_sbb
X	9092040	X_9092040_SNP [dm3] X_9198007_SNP [dm6]	C	T	1.312e^-5	0.718	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8543224	2R_8543224_SNP [dm3] 2R_12655719_SNP [dm6]	A	G	1.328e^-5	0.718	UTR_3_PRIME ZnT49B UPSTREAM CG8646
2L	19330069	2L_19330069_SNP [dm3] 2L_19330069_SNP [dm6]	T	A	1.336e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5358880	X_5358880_SNP [dm3] X_5464847_SNP [dm6]	G	A	1.353e^-5	0.718	UTR_5_PRIME SPR INTRON SPR
3R	10124408	3R_10124408_SNP [dm3] 3R_14298686_SNP [dm6]	T	A	1.371e^-5	0.718	UTR_5_PRIME CG12207 INTRON CG12207	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9086899	2L_9086899_SNP [dm3] 2L_9086899_SNP [dm6]	T	A	1.486e^-5	0.718	NON_SYNONYMOUS_CODING Toll-4
2R	6275299	2R_6275299_SNP [dm3] 2R_10387794_SNP [dm6]	G	A	1.497e^-5	0.718	INTRON CG42732
2R	6275326	2R_6275326_SNP [dm3] 2R_10387821_SNP [dm6]	A	C	1.501e^-5	0.718	INTRON CG42732
2R	6635857	2R_6635857_SNP [dm3] 2R_10748352_SNP [dm6]	T	C	1.528e^-5	0.718	INTRON CG33144
3L	6176401	3L_6176401_SNP [dm3] 3L_6183301_SNP [dm6]	T	G	1.581e^-5	0.718	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19197016	2R_19197016_SNP [dm3] 2R_23309493_SNP [dm6]	C	T	1.608e^-5	0.718	SYNONYMOUS_CODING Prosbeta5R1	TF binding site mE1_TFBS_cad
X	5358871	X_5358871_SNP [dm3] X_5464838_SNP [dm6]	T	A	1.623e^-5	0.718	UTR_5_PRIME SPR INTRON SPR
X	15405951	X_15405951_INS [dm3] X_15511918_INS [dm6]	C	CTGCAGACCCC...	1.641e^-5	0.718	UTR_3_PRIME Ac13E DOWNSTREAM Gmap
2L	10438508	2L_10438508_SNP [dm3] 2L_10438508_SNP [dm6]	T	A	1.678e^-5	0.718	UPSTREAM CG13142 INTRON CHIP
3R	25063533	3R_25063533_SNP [dm3] 3R_29237811_SNP [dm6]	T	G	1.693e^-5	0.718	SYNONYMOUS_CODING CG11951	TF binding site mE1_TFBS_cad
2R	19197378	2R_19197378_SNP [dm3] 2R_23309855_SNP [dm6]	T	C	1.752e^-5	0.718	UPSTREAM Prosbeta5R1 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4192301	2L_4192301_SNP [dm3] 2L_4192301_SNP [dm6]	G	A	1.775e^-5	0.718	INTRON CG3714
X	606678	X_606678_SNP [dm3] X_712645_SNP [dm6]	T	A	1.789e^-5	0.718	INTRON sdk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19196116	2R_19196116_SNP [dm3] 2R_23308593_SNP [dm6]	G	A	1.798e^-5	0.718	DOWNSTREAM Prosbeta5R1 INTERGENIC
2R	18751497	2R_18751497_INS [dm3] 2R_22863974_INS [dm6]	G	GGGAGGG	1.800e^-5	0.718	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19259009	2L_19259009_SNP [dm3] 2L_19259009_SNP [dm6]	C	A	1.848e^-5	0.72	DOWNSTREAM CG31797 INTERGENIC
X	532587	X_532587_SNP [dm3] X_638554_SNP [dm6]	A	T	1.937e^-5	0.72	NON_SYNONYMOUS_CODING su_s_
2R	15266744	2R_15266744_SNP [dm3] 2R_19379239_SNP [dm6]	C	T	1.943e^-5	0.72	INTRON CG10062
3L	6173940	3L_6173940_SNP [dm3] 3L_6180840_SNP [dm6]	A	G	1.958e^-5	0.72	INTRON CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	518393	X_518393_SNP [dm3] X_624360_SNP [dm6]	C	T	2.090e^-5	0.74	UPSTREAM CR45475 DOWNSTREAM CG13364 INTRON CG13369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17680972	3R_17680972_SNP [dm3] 3R_21855250_SNP [dm6]	G	C	2.182e^-5	0.74	INTRON glec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	606174	X_606174_SNP [dm3] X_712141_SNP [dm6]	C	T	2.248e^-5	0.74	INTRON sdk
3L	5329641	3L_5329641_SNP [dm3] 3L_5336541_SNP [dm6]	C	T	2.249e^-5	0.74	INTERGENIC
2L	6238697	2L_6238697_SNP [dm3] 2L_6238697_SNP [dm6]	C	G	2.323e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	2043687	3L_2043687_SNP [dm3] 3L_2043687_SNP [dm6]	T	A	2.361e^-5	0.74	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10188418	3L_10188418_SNP [dm3] 3L_10195318_SNP [dm6]	T	C	2.516e^-5	0.74	INTRON ect
2R	6143749	2R_6143749_SNP [dm3] 2R_10256244_SNP [dm6]	T	A	2.548e^-5	0.74	UPSTREAM CG12911 DOWNSTREAM CG12913 INTERGENIC
2L	20622414	2L_20622414_SNP [dm3] 2L_20622414_SNP [dm6]	T	C	2.571e^-5	0.74	INTRON CR44909
3L	14084349	3L_14084349_SNP [dm3] 3L_14091249_SNP [dm6]	C	T	2.592e^-5	0.74	INTERGENIC
3L	11478397	3L_11478397_SNP [dm3] 3L_11485297_SNP [dm6]	C	A	2.645e^-5	0.74	INTERGENIC
X	3291422	X_3291422_SNP [dm3] X_3397389_SNP [dm6]	T	A	2.678e^-5	0.74	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	512332	X_512332_SNP [dm3] X_618299_SNP [dm6]	T	C	2.727e^-5	0.74	UPSTREAM CG13366 INTRON CG13366	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_sens
X	512515	X_512515_SNP [dm3] X_618482_SNP [dm6]	T	C	2.727e^-5	0.74	UPSTREAM CG13366 INTRON CG13366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_sens
X	513696	X_513696_SNP [dm3] X_619663_SNP [dm6]	A	T	2.727e^-5	0.74	UTR_5_PRIME CG13366 UPSTREAM CR45474 INTRON CG13366	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	526874	X_526874_SNP [dm3] X_632841_SNP [dm6]	G	C	2.727e^-5	0.74	NON_SYNONYMOUS_CODING l_1_1Bi DOWNSTREAM Dredd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12398077	3L_12398077_SNP [dm3] 3L_12404977_SNP [dm6]	A	G	2.742e^-5	0.74	INTRON CG32103	TF binding site mE1_TFBS_cad
3L	12398090	3L_12398090_SNP [dm3] 3L_12404990_SNP [dm6]	A	G	2.742e^-5	0.74	INTRON CG32103	TF binding site mE1_TFBS_cad
2L	6238718	2L_6238718_SNP [dm3] 2L_6238718_SNP [dm6]	G	A	2.791e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	22083017	3L_22083017_SNP [dm3] 3L_22089917_SNP [dm6]	T	C	2.802e^-5	0.74	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	497140	X_497140_SNP [dm3] X_603107_SNP [dm6]	C	T	2.924e^-5	0.762	INTRON CG13366	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12390711	3L_12390711_SNP [dm3] 3L_12397611_SNP [dm6]	A	T	3.041e^-5	0.766	NON_SYNONYMOUS_CODING CG32104 DOWNSTREAM Obp69a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20992012	2R_20992012_SNP [dm3] 2R_25104489_SNP [dm6]	T	A	3.126e^-5	0.766	INTRON lov
2L	10438553	2L_10438553_INS [dm3] 2L_10438553_INS [dm6]	A	AA	3.153e^-5	0.766	UPSTREAM CG13142 INTRON CHIP
X	602846	X_602846_SNP [dm3] X_708813_SNP [dm6]	G	A	3.162e^-5	0.766	INTRON sdk
3L	10337429	3L_10337429_SNP [dm3] 3L_10344329_SNP [dm6]	C	T	3.195e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10337441	3L_10337441_SNP [dm3] 3L_10344341_SNP [dm6]	A	C	3.247e^-5	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3745016	2L_3745016_SNP [dm3] 2L_3745016_SNP [dm6]	T	C	3.254e^-5	0.766	UPSTREAM CG10019 INTRON CG10019
X	583903	X_583903_SNP [dm3] X_689870_SNP [dm6]	T	A	3.267e^-5	0.766	INTRON sdk	TF binding site BDTNP1_TFBS_da
2L	21885277	2L_21885277_SNP [dm3] 2L_21885277_SNP [dm6]	A	T	3.380e^-5	0.779	INTERGENIC
2L	10438565	2L_10438565_SNP [dm3] 2L_10438565_SNP [dm6]	G	A	3.435e^-5	0.779	UPSTREAM CG13142 INTRON CHIP
3L	8268091	3L_8268091_SNP [dm3] 3L_8274991_SNP [dm6]	T	A	3.447e^-5	0.779	INTRON Dscam4
3R	17555183	3R_17555183_SNP [dm3] 3R_21729461_SNP [dm6]	A	T	3.525e^-5	0.785	DOWNSTREAM CR43096 INTERGENIC
X	526352	X_526352_SNP [dm3] X_632319_SNP [dm6]	A	C	3.560e^-5	0.785	NON_SYNONYMOUS_CODING l_1_1Bi
2R	6274755	2R_6274755_SNP [dm3] 2R_10387250_SNP [dm6]	G	C	3.642e^-5	0.794	INTRON CG42732
3L	4147170	3L_4147170_SNP [dm3] 3L_4147170_SNP [dm6]	A	T	3.746e^-5	0.807	INTERGENIC
3R	25693317	3R_25693317_SNP [dm3] 3R_29867595_SNP [dm6]	A	T	3.933e^-5	0.813	UPSTREAM Zip99C INTRON Zip99C	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
X	3291418	X_3291418_SNP [dm3] X_3397385_SNP [dm6]	C	T	3.987e^-5	0.813	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5777220	3R_5777220_SNP [dm3] 3R_9951498_SNP [dm6]	C	A	4.029e^-5	0.813	INTRON Glut4EF
X	575521	X_575521_SNP [dm3] X_681488_SNP [dm6]	G	A	4.068e^-5	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	8211914	X_8211914_SNP [dm3] X_8317881_SNP [dm6]	C	T	4.108e^-5	0.813	INTRON nAChRalpha3
X	596392	X_596392_SNP [dm3] X_702359_SNP [dm6]	G	A	4.142e^-5	0.813	INTRON sdk	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	523668	X_523668_SNP [dm3] X_629635_SNP [dm6]	C	T	4.261e^-5	0.813	UPSTREAM l_1_1Bi & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	524131	X_524131_SNP [dm3] X_630098_SNP [dm6]	G	C	4.412e^-5	0.813	NON_SYNONYMOUS_CODING l_1_1Bi UPSTREAM RpL36	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8861719	2R_8861719_SNP [dm3] 2R_12974214_SNP [dm6]	C	A	4.433e^-5	0.813	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8861722	2R_8861722_SNP [dm3] 2R_12974217_SNP [dm6]	A	C	4.433e^-5	0.813	INTRON Psc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5329400	3L_5329400_SNP [dm3] 3L_5336300_SNP [dm6]	A	G	4.465e^-5	0.813	INTERGENIC
2R	15266762	2R_15266762_SNP [dm3] 2R_19379257_SNP [dm6]	T	A	4.471e^-5	0.813	SPLICE_SITE_REGION CG10062 INTRON CG10062
X	14089993	X_14089993_SNP [dm3] X_14195960_SNP [dm6]	C	T	4.536e^-5	0.813	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo

Showing 1 to 100 of 1,000 entries

Previous1 2 3 4 5…10Next

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.977e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01211

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.3406	0.0692
In_3R_K	8.1174	0.0173

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1431 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	7422298	3L_7422298_SNP [dm3] 3L_7429198_SNP [dm6]	T	A	8.018e^-8	0.15	INTRON CG42458
3R	24077775	3R_24077775_SNP [dm3] 3R_28252053_SNP [dm6]	C	A	2.406e^-6	1	INTERGENIC
2L	11795059	2L_11795059_DEL [dm3] 2L_11795059_DEL [dm6]	TCA	T	2.979e^-6	1	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
2R	6438417	2R_6438417_SNP [dm3] 2R_10550912_SNP [dm6]	A	C	3.586e^-6	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13004428	2R_13004428_DEL [dm3] 2R_17116923_DEL [dm6]	AGAGTTCCAGGA...	A	4.375e^-6	1	INTERGENIC
3L	20968891	3L_20968891_SNP [dm3] 3L_20975791_SNP [dm6]	A	T	4.442e^-6	1	INTERGENIC
2R	12967989	2R_12967989_SNP [dm3] 2R_17080484_SNP [dm6]	C	A	6.430e^-6	1	INTRON CG30460
X	973198	X_973198_SNP [dm3] X_1079165_SNP [dm6]	A	G	8.599e^-6	1	INTRON CR44779 & 1 other
2L	11795065	2L_11795065_SNP [dm3] 2L_11795065_SNP [dm6]	T	A	9.323e^-6	1	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
3L	10602448	3L_10602448_SNP [dm3] 3L_10609348_SNP [dm6]	C	A	1.046e^-5	1	INTERGENIC
2R	11291173	2R_11291173_SNP [dm3] 2R_15403668_SNP [dm6]	T	C	1.258e^-5	1	INTRON CG43729
3L	3762134	3L_3762134_SNP [dm3] 3L_3762134_SNP [dm6]	G	T	1.260e^-5	1	INTRON CG32264
2L	19840176	2L_19840176_SNP [dm3] 2L_19840176_SNP [dm6]	T	G	1.367e^-5	1	INTRON sick
3R	5817016	3R_5817016_INS [dm3] 3R_9991294_INS [dm6]	T	TGCT	1.584e^-5	1	UTR_3_PRIME Glut4EF
3R	5739963	3R_5739963_SNP [dm3] 3R_9914241_SNP [dm6]	T	A	1.598e^-5	1	INTRON Glut4EF
3L	8169426	3L_8169426_SNP [dm3] 3L_8176326_SNP [dm6]	A	C	1.719e^-5	1	UTR_3_PRIME Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	18441694	2R_18441694_SNP [dm3] 2R_22554189_SNP [dm6]	G	A	1.769e^-5	1	INTRON px
3L	10142941	3L_10142941_SNP [dm3] 3L_10149841_SNP [dm6]	G	A	1.920e^-5	1	INTRON dpr10
3L	9138631	3L_9138631_SNP [dm3] 3L_9145531_SNP [dm6]	A	G	1.934e^-5	1	UTR_3_PRIME nwk DOWNSTREAM mir-4940 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	4998405	3L_4998405_SNP [dm3] 3L_4998405_SNP [dm6]	T	C	1.946e^-5	1	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25018695	3R_25018695_SNP [dm3] 3R_29192973_SNP [dm6]	C	A	2.038e^-5	1	INTRON CG14509
3R	24702315	3R_24702315_SNP [dm3] 3R_28876593_SNP [dm6]	A	G	2.131e^-5	1	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_chinmo
3R	22659957	3R_22659957_DEL [dm3] 3R_26834235_DEL [dm6]	AA	A	2.154e^-5	1	INTRON Tl	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	11285594	2R_11285594_SNP [dm3] 2R_15398089_SNP [dm6]	G	A	2.166e^-5	1	INTERGENIC
2L	19884624	2L_19884624_SNP [dm3] 2L_19884624_SNP [dm6]	G	T	2.308e^-5	1	INTRON sick
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	2.315e^-5	1	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
2L	3886000	2L_3886000_SNP [dm3] 2L_3886000_SNP [dm6]	G	T	2.390e^-5	1	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24701442	3R_24701442_SNP [dm3] 3R_28875720_SNP [dm6]	T	G	2.394e^-5	1	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18856248	3R_18856248_SNP [dm3] 3R_23030526_SNP [dm6]	C	T	2.517e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13480511	2L_13480511_SNP [dm3] 2L_13480511_SNP [dm6]	C	T	2.519e^-5	1	INTRON CG42784
2L	13100947	2L_13100947_DEL [dm3] 2L_13100947_DEL [dm6]	TT	T	2.527e^-5	1	INTERGENIC
2L	4770897	2L_4770897_SNP [dm3] 2L_4770897_SNP [dm6]	G	C	2.562e^-5	1	INTRON CG15630
2L	9186332	2L_9186332_SNP [dm3] 2L_9186332_SNP [dm6]	T	G	2.605e^-5	1	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6895478	2R_6895478_SNP [dm3] 2R_11007973_SNP [dm6]	C	T	2.643e^-5	1	INTRON luna
2L	19263912	2L_19263912_SNP [dm3] 2L_19263912_SNP [dm6]	A	T	2.652e^-5	1	DOWNSTREAM CR44191 INTERGENIC
2R	15943699	2R_15943699_SNP [dm3] 2R_20056194_SNP [dm6]	A	T	2.747e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5817008	3R_5817008_DEL [dm3] 3R_9991286_DEL [dm6]	ACCTTG	A	2.808e^-5	1	UTR_3_PRIME Glut4EF
2R	12967998	2R_12967998_SNP [dm3] 2R_17080493_SNP [dm6]	C	A	2.984e^-5	1	INTRON CG30460
3R	14655676	3R_14655676_SNP [dm3] 3R_18829954_SNP [dm6]	G	A	3.060e^-5	1	INTRON CG18208
3L	3750099	3L_3750099_SNP [dm3] 3L_3750099_SNP [dm6]	T	C	3.157e^-5	1	INTRON CG32264
2L	13603445	2L_13603445_SNP [dm3] 2L_13603445_SNP [dm6]	G	A	3.296e^-5	1	INTRON kuz
X	17020323	X_17020323_SNP [dm3] X_17126290_SNP [dm6]	A	C	3.303e^-5	1	INTRON CG5004	TF binding site BDTNP1_TFBS_dl
2L	568147	2L_568147_SNP [dm3] 2L_568147_SNP [dm6]	C	T	3.319e^-5	1	UPSTREAM CG2807 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16554412	3L_16554412_SNP [dm3] 3L_16561312_SNP [dm6]	G	A	3.346e^-5	1	INTERGENIC
2R	11291137	2R_11291137_SNP [dm3] 2R_15403632_SNP [dm6]	T	A	3.348e^-5	1	INTRON CG43729
3R	10533643	3R_10533643_SNP [dm3] 3R_14707921_SNP [dm6]	G	A	3.410e^-5	1	INTRON kibra
3R	10153683	3R_10153683_SNP [dm3] 3R_14327961_SNP [dm6]	G	A	3.447e^-5	1	UPSTREAM spn-B DOWNSTREAM CG3321 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3R	10964751	3R_10964751_SNP [dm3] 3R_15139029_SNP [dm6]	A	G	3.452e^-5	1	UPSTREAM CG3987 DOWNSTREAM CG3984 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	674808	X_674808_SNP [dm3] X_780775_SNP [dm6]	C	T	3.489e^-5	1	INTRON fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	7422510	3L_7422510_SNP [dm3] 3L_7429410_SNP [dm6]	A	G	3.498e^-5	1	INTRON CG42458
3R	5803398	3R_5803398_SNP [dm3] 3R_9977676_SNP [dm6]	G	A	3.503e^-5	1	INTRON Glut4EF
2R	12967974	2R_12967974_SNP [dm3] 2R_17080469_SNP [dm6]	C	T	3.520e^-5	1	INTRON CG30460
2L	19314678	2L_19314678_SNP [dm3] 2L_19314678_SNP [dm6]	A	C	3.592e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8876687	2L_8876687_SNP [dm3] 2L_8876687_SNP [dm6]	C	T	3.612e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	20224506	2R_20224506_INS [dm3] 2R_24336983_INS [dm6]	A	ATA	3.667e^-5	1	INTERGENIC
3L	20261571	3L_20261571_SNP [dm3] 3L_20268471_SNP [dm6]	G	C	3.700e^-5	1	SYNONYMOUS_CODING CG32228 DOWNSTREAM gogo
3R	24051740	3R_24051740_SNP [dm3] 3R_28226018_SNP [dm6]	A	G	3.883e^-5	1	INTRON CG34354	TF binding site mE1_TFBS_HSA
2R	14285628	2R_14285628_SNP [dm3] 2R_18398123_SNP [dm6]	C	G	4.198e^-5	1	UPSTREAM GstE1 & 1 other INTRON GstE10
3R	4252841	3R_4252841_SNP [dm3] 3R_8427119_SNP [dm6]	T	C	4.283e^-5	1	INTRON CG45263
3R	6844216	3R_6844216_SNP [dm3] 3R_11018494_SNP [dm6]	C	A	4.333e^-5	1	INTRON CG34114
2R	10200470	2R_10200470_SNP [dm3] 2R_14312965_SNP [dm6]	G	A	4.340e^-5	1	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14454111	2L_14454111_SNP [dm3] 2L_14454111_SNP [dm6]	A	G	4.467e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19250201	2L_19250201_SNP [dm3] 2L_19250201_SNP [dm6]	C	G	4.581e^-5	1	INTERGENIC
2L	19252673	2L_19252673_SNP [dm3] 2L_19252673_SNP [dm6]	T	C	4.619e^-5	1	INTERGENIC
2L	14252433	2L_14252433_SNP [dm3] 2L_14252433_SNP [dm6]	G	A	4.667e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	8201471	3L_8201471_SNP [dm3] 3L_8208371_SNP [dm6]	A	T	4.973e^-5	1	INTERGENIC
2R	12576992	2R_12576992_SNP [dm3] 2R_16689487_SNP [dm6]	A	C	5.008e^-5	1	INTRON CG30463
3R	3244244	3R_3244244_SNP [dm3] 3R_7418522_SNP [dm6]	G	A	5.010e^-5	1	UPSTREAM CG31544 INTERGENIC
2R	11291119	2R_11291119_SNP [dm3] 2R_15403614_SNP [dm6]	G	A	5.038e^-5	1	INTRON CG43729
3L	835171	3L_835171_SNP [dm3] 3L_835171_SNP [dm6]	C	T	5.102e^-5	1	SYNONYMOUS_CODING CG42553 UPSTREAM CG42554	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	4222512	3R_4222512_SNP [dm3] 3R_8396790_SNP [dm6]	A	G	5.176e^-5	1	INTRON CG45263
3R	4225570	3R_4225570_SNP [dm3] 3R_8399848_SNP [dm6]	G	C	5.193e^-5	1	INTRON CG45263
3R	5766811	3R_5766811_SNP [dm3] 3R_9941089_SNP [dm6]	G	T	5.216e^-5	1	INTRON Glut4EF
2R	11291123	2R_11291123_SNP [dm3] 2R_15403618_SNP [dm6]	T	A	5.264e^-5	1	INTRON CG43729
2R	11291124	2R_11291124_SNP [dm3] 2R_15403619_SNP [dm6]	A	T	5.339e^-5	1	INTRON CG43729
3L	4998404	3L_4998404_SNP [dm3] 3L_4998404_SNP [dm6]	A	C	5.389e^-5	1	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20603531	X_20603531_SNP [dm3] X_20732504_SNP [dm6]	T	C	5.434e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	7091001	2R_7091001_SNP [dm3] 2R_11203496_SNP [dm6]	G	T	5.457e^-5	1	INTRON shn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	8043134	3L_8043134_DEL [dm3] 3L_8050034_DEL [dm6]	AA	A	5.490e^-5	1	UTR_3_PRIME nmo
X	19896686	X_19896686_SNP [dm3] X_20002653_SNP [dm6]	A	T	5.502e^-5	1	UPSTREAM CG17003 INTERGENIC
2L	19255610	2L_19255610_SNP [dm3] 2L_19255610_SNP [dm6]	A	C	6.321e^-5	1	INTERGENIC
2R	12967643	2R_12967643_SNP [dm3] 2R_17080138_SNP [dm6]	A	C	6.396e^-5	1	INTRON CG30460
3R	24990925	3R_24990925_SNP [dm3] 3R_29165203_SNP [dm6]	A	C	6.630e^-5	1	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
3R	24702151	3R_24702151_SNP [dm3] 3R_28876429_SNP [dm6]	T	C	6.630e^-5	1	SYNONYMOUS_CODING CG14528 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11285592	2R_11285592_SNP [dm3] 2R_15398087_SNP [dm6]	A	C	6.634e^-5	1	INTERGENIC
2L	2339627	2L_2339627_SNP [dm3] 2L_2339627_SNP [dm6]	G	C	6.705e^-5	1	SYNONYMOUS_CODING eys INTRON CG9967
X	2214728	X_2214728_SNP [dm3] X_2320695_SNP [dm6]	A	T	6.715e^-5	1	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13004461	2R_13004461_SNP [dm3] 2R_17116956_SNP [dm6]	G	A	6.733e^-5	1	INTERGENIC
2L	19833264	2L_19833264_SNP [dm3] 2L_19833264_SNP [dm6]	A	G	6.809e^-5	1	INTRON sick
2R	13836981	2R_13836981_SNP [dm3] 2R_17949476_SNP [dm6]	T	C	6.884e^-5	1	INTERGENIC
2L	19807139	2L_19807139_SNP [dm3] 2L_19807139_SNP [dm6]	C	T	6.988e^-5	1	INTRON sick
3L	4584327	3L_4584327_SNP [dm3] 3L_4584327_SNP [dm6]	C	A	7.046e^-5	1	INTRON CG42540
2L	8791191	2L_8791191_SNP [dm3] 2L_8791191_SNP [dm6]	A	T	7.256e^-5	1	INTERGENIC
2L	13403447	2L_13403447_SNP [dm3] 2L_13403447_SNP [dm6]	T	C	7.352e^-5	1	INTRON CG7110	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14009658	3R_14009658_SNP [dm3] 3R_18183936_SNP [dm6]	A	G	7.379e^-5	1	SYNONYMOUS_CODING CG7208 UPSTREAM cdm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19257818	2L_19257818_SNP [dm3] 2L_19257818_SNP [dm6]	T	G	7.452e^-5	1	INTERGENIC
3L	4589366	3L_4589366_SNP [dm3] 3L_4589366_SNP [dm6]	G	A	7.571e^-5	1	INTRON CG42540
3L	3932859	3L_3932859_SNP [dm3] 3L_3932859_SNP [dm6]	C	G	7.685e^-5	1	INTRON Eip63F-1
3R	23867902	3R_23867902_SNP [dm3] 3R_28042180_SNP [dm6]	G	A	7.855e^-5	1	INTRON CG34362
2L	15010247	2L_15010247_SNP [dm3] 2L_15010247_SNP [dm6]	G	T	7.890e^-5	1	NON_SYNONYMOUS_CODING l_2_35Bd UPSTREAM l_2_35Bc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens

Showing 1 to 100 of 1,000 entries

Previous1 2 3 4 5…10Next

By genomic position
Variant impact
Gene name

sd_Lifespan_Env_28 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results