DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.114e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06243
In_3R_K	0.04687

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.4373	0.066
In_3R_K	5.461	0.0652

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2223 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	22876855	3R_22876855_SNP [dm3] 3R_27051133_SNP [dm6]	A	G	7.168e^-8	0.134	DOWNSTREAM TwdlT INTRON RYa-R
3R	26700455	3R_26700455_SNP [dm3] 3R_30874733_SNP [dm6]	G	T	7.776e^-7	0.692	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
3R	22613881	3R_22613881_SNP [dm3] 3R_26788159_SNP [dm6]	A	T	1.216e^-6	0.692	INTERGENIC
2R	18560357	2R_18560357_SNP [dm3] 2R_22672852_SNP [dm6]	A	G	2.342e^-6	0.692	UTR_3_PRIME RYBP DOWNSTREAM CR44761	TF binding site mE1_TFBS_HSA
3R	22876886	3R_22876886_DEL [dm3] 3R_27051164_DEL [dm6]	TTC	CA	2.484e^-6	0.692	DOWNSTREAM TwdlT INTRON RYa-R
3R	20347917	3R_20347917_SNP [dm3] 3R_24522195_SNP [dm6]	T	A	2.827e^-6	0.692	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A & 1 other	TF binding site BDTNP1_TFBS_dl
3R	8641458	3R_8641458_SNP [dm3] 3R_12815736_SNP [dm6]	C	A	2.965e^-6	0.692	INTRON CG31345
2L	1465048	2L_1465048_SNP [dm3] 2L_1465048_SNP [dm6]	T	C	2.985e^-6	0.692	INTERGENIC	TF binding site mE1_TFBS_D
2L	1464957	2L_1464957_SNP [dm3] 2L_1464957_SNP [dm6]	C	A	4.034e^-6	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	14279618	2R_14279618_SNP [dm3] 2R_18392113_SNP [dm6]	C	T	4.124e^-6	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3296595	2L_3296595_SNP [dm3] 2L_3296595_SNP [dm6]	T	G	4.548e^-6	0.692	SYNONYMOUS_CODING CG9663
2L	10617553	2L_10617553_SNP [dm3] 2L_10617553_SNP [dm6]	T	A	4.755e^-6	0.692	INTRON Trim9
3R	8649001	3R_8649001_SNP [dm3] 3R_12823279_SNP [dm6]	G	A	4.797e^-6	0.692	INTERGENIC
3R	8651161	3R_8651161_SNP [dm3] 3R_12825439_SNP [dm6]	C	A	5.404e^-6	0.709	INTERGENIC
3R	8649002	3R_8649002_SNP [dm3] 3R_12823280_SNP [dm6]	T	A	5.810e^-6	0.709	INTERGENIC
2R	14229772	2R_14229772_SNP [dm3] 2R_18342267_SNP [dm6]	A	C	6.052e^-6	0.709	INTRON sbb	TF binding site BDTNP1_TFBS_da
3L	8548743	3L_8548743_SNP [dm3] 3L_8555643_SNP [dm6]	G	C	6.433e^-6	0.71	INTRON rhea
2L	7633859	2L_7633859_SNP [dm3] 2L_7633859_SNP [dm6]	C	T	7.997e^-6	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	18272012	2R_18272012_SNP [dm3] 2R_22384507_SNP [dm6]	G	A	8.439e^-6	0.733	INTRON CG13506	TF binding site mE1_TFBS_Trl
3R	8679048	3R_8679048_SNP [dm3] 3R_12853326_SNP [dm6]	G	A	8.812e^-6	0.733	INTERGENIC
3R	21350335	3R_21350335_SNP [dm3] 3R_25524613_SNP [dm6]	G	T	9.269e^-6	0.733	INTRON msi
3R	8667437	3R_8667437_SNP [dm3] 3R_12841715_SNP [dm6]	C	T	1.087e^-5	0.733	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
2L	6947649	2L_6947649_SNP [dm3] 2L_6947649_SNP [dm6]	A	G	1.268e^-5	0.733	SYNONYMOUS_CODING ihog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9253600	2R_9253600_SNP [dm3] 2R_13366095_SNP [dm6]	T	A	1.317e^-5	0.733	INTERGENIC
2L	10273425	2L_10273425_SNP [dm3] 2L_10273425_SNP [dm6]	G	C	1.332e^-5	0.733	INTRON Utx
2L	3296724	2L_3296724_SNP [dm3] 2L_3296724_SNP [dm6]	C	A	1.347e^-5	0.733	INTRON CG9663
2R	17082950	2R_17082950_SNP [dm3] 2R_21195445_SNP [dm6]	C	A	1.353e^-5	0.733	INTRON Lapsyn
3L	14187940	3L_14187940_SNP [dm3] 3L_14194840_SNP [dm6]	T	C	1.378e^-5	0.733	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9244624	3R_9244624_SNP [dm3] 3R_13418902_SNP [dm6]	A	G	1.455e^-5	0.733	INTERGENIC
3R	8650657	3R_8650657_SNP [dm3] 3R_12824935_SNP [dm6]	C	A	1.465e^-5	0.733	INTERGENIC
2R	18259827	2R_18259827_SNP [dm3] 2R_22372322_SNP [dm6]	A	C	1.507e^-5	0.733	INTRON Liprin-gamma
2L	10617622	2L_10617622_SNP [dm3] 2L_10617622_SNP [dm6]	A	C	1.517e^-5	0.733	INTRON Trim9
3L	3914030	3L_3914030_SNP [dm3] 3L_3914030_SNP [dm6]	A	C	1.524e^-5	0.733	INTRON Eip63F-1
3L	2770025	3L_2770025_SNP [dm3] 3L_2770025_SNP [dm6]	T	A	1.541e^-5	0.733	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8651023	3R_8651023_SNP [dm3] 3R_12825301_SNP [dm6]	G	A	1.561e^-5	0.733	INTERGENIC
3R	8650265	3R_8650265_SNP [dm3] 3R_12824543_SNP [dm6]	A	G	1.627e^-5	0.733	INTERGENIC
3R	24747991	3R_24747991_SNP [dm3] 3R_28922269_SNP [dm6]	G	C	1.660e^-5	0.733	UTR_3_PRIME Doa UPSTREAM CG11828 DOWNSTREAM Doa
2L	6947708	2L_6947708_SNP [dm3] 2L_6947708_SNP [dm6]	T	G	1.751e^-5	0.733	SYNONYMOUS_CODING ihog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8639076	3R_8639076_SNP [dm3] 3R_12813354_SNP [dm6]	G	T	1.778e^-5	0.733	INTRON CG31345
2L	11344273	2L_11344273_SNP [dm3] 2L_11344273_SNP [dm6]	G	A	1.793e^-5	0.733	UPSTREAM CG14926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	1464943	2L_1464943_SNP [dm3] 2L_1464943_SNP [dm6]	A	C	1.832e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	16833247	2R_16833247_SNP [dm3] 2R_20945742_SNP [dm6]	T	C	1.913e^-5	0.733	SYNONYMOUS_CODING Act57B UPSTREAM snoRNA:660	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1666918	X_1666918_SNP [dm3] X_1772885_SNP [dm6]	A	C	1.938e^-5	0.733	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	1715954	2R_1715954_SNP [dm3] 2R_5828449_SNP [dm6]	C	T	1.949e^-5	0.733	INTRON dpr12	TF binding site mE1_TFBS_chinmo
3R	8643060	3R_8643060_SNP [dm3] 3R_12817338_SNP [dm6]	T	G	1.960e^-5	0.733	UPSTREAM CG31345 INTERGENIC
3L	9324161	3L_9324161_SNP [dm3] 3L_9331061_SNP [dm6]	A	C	2.007e^-5	0.733	INTERGENIC
2L	15097157	2L_15097157_SNP [dm3] 2L_15097157_SNP [dm6]	C	T	2.078e^-5	0.733	DOWNSTREAM CG15270 INTERGENIC
2R	14229800	2R_14229800_SNP [dm3] 2R_18342295_SNP [dm6]	G	A	2.158e^-5	0.733	INTRON sbb	TF binding site BDTNP1_TFBS_da
2L	11344259	2L_11344259_DEL [dm3] 2L_11344259_DEL [dm6]	AT	A	2.208e^-5	0.733	UPSTREAM CG14926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	8638420	3R_8638420_SNP [dm3] 3R_12812698_SNP [dm6]	T	A	2.248e^-5	0.733	INTRON CG31345
2L	13567487	2L_13567487_SNP [dm3] 2L_13567487_SNP [dm6]	T	C	2.263e^-5	0.733	INTRON kuz
3R	8638422	3R_8638422_SNP [dm3] 3R_12812700_SNP [dm6]	A	T	2.333e^-5	0.733	INTRON CG31345
3R	8640891	3R_8640891_SNP [dm3] 3R_12815169_SNP [dm6]	T	A	2.405e^-5	0.733	INTRON CG31345
3L	3182901	3L_3182901_SNP [dm3] 3L_3182901_SNP [dm6]	C	T	2.412e^-5	0.733	SYNONYMOUS_CODING Girdin
3L	2765297	3L_2765297_SNP [dm3] 3L_2765297_SNP [dm6]	T	G	2.455e^-5	0.733	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	2884827	3R_2884827_SNP [dm3] 3R_7059105_SNP [dm6]	T	A	2.512e^-5	0.733	UPSTREAM dj DOWNSTREAM CG1979 INTERGENIC	regulatory region REDfly_CRMs
3R	8650366	3R_8650366_SNP [dm3] 3R_12824644_SNP [dm6]	T	C	2.599e^-5	0.733	INTERGENIC
3R	2884857	3R_2884857_SNP [dm3] 3R_7059135_SNP [dm6]	G	C	2.635e^-5	0.733	UPSTREAM dj DOWNSTREAM CG1979 INTERGENIC	regulatory region REDfly_CRMs
3L	2765259	3L_2765259_SNP [dm3] 3L_2765259_SNP [dm6]	G	A	2.707e^-5	0.733	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	1665804	X_1665804_SNP [dm3] X_1771771_SNP [dm6]	G	C	2.726e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2765258	3L_2765258_SNP [dm3] 3L_2765258_SNP [dm6]	C	G	2.728e^-5	0.733	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3420243	2L_3420243_SNP [dm3] 2L_3420243_SNP [dm6]	T	G	2.751e^-5	0.733	INTRON pgant2
X	1667646	X_1667646_SNP [dm3] X_1773613_SNP [dm6]	C	T	2.788e^-5	0.733	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	18224181	2L_18224181_SNP [dm3] 2L_18224181_SNP [dm6]	T	C	2.792e^-5	0.733	INTRON CG42750
3L	5209960	3L_5209960_SNP [dm3] 3L_5216860_SNP [dm6]	A	G	2.838e^-5	0.733	INTRON shep
3R	8638803	3R_8638803_SNP [dm3] 3R_12813081_SNP [dm6]	G	C	2.976e^-5	0.733	INTRON CG31345
3L	15293460	3L_15293460_SNP [dm3] 3L_15300360_SNP [dm6]	A	T	2.999e^-5	0.733	DOWNSTREAM Best3 INTRON Best4
2L	7986390	2L_7986390_SNP [dm3] 2L_7986390_SNP [dm6]	C	T	3.051e^-5	0.733	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
3L	1024910	3L_1024910_SNP [dm3] 3L_1024910_SNP [dm6]	G	A	3.074e^-5	0.733	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13567489	2L_13567489_SNP [dm3] 2L_13567489_SNP [dm6]	T	A	3.087e^-5	0.733	INTRON kuz
2R	7866622	2R_7866622_SNP [dm3] 2R_11979117_SNP [dm6]	A	G	3.124e^-5	0.733	UTR_3_PRIME CG30037 UPSTREAM CG30036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5210029	3L_5210029_SNP [dm3] 3L_5216929_SNP [dm6]	A	C	3.129e^-5	0.733	INTRON shep
2R	16373745	2R_16373745_SNP [dm3] 2R_20486240_SNP [dm6]	A	T	3.234e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1449841	2L_1449841_SNP [dm3] 2L_1449841_SNP [dm6]	C	G	3.248e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	12418035	2R_12418035_SNP [dm3] 2R_16530530_SNP [dm6]	C	G	3.251e^-5	0.733	INTRON Sema-2a
3R	12198431	3R_12198431_SNP [dm3] 3R_16372709_SNP [dm6]	G	A	3.276e^-5	0.733	EXON CR45193
2L	1449807	2L_1449807_SNP [dm3] 2L_1449807_SNP [dm6]	C	A	3.278e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	8679055	3R_8679055_SNP [dm3] 3R_12853333_SNP [dm6]	C	T	3.303e^-5	0.733	INTERGENIC
2L	11762266	2L_11762266_DEL [dm3] 2L_11762266_DEL [dm6]	GC	G	3.324e^-5	0.733	INTERGENIC
3R	25957115	3R_25957115_SNP [dm3] 3R_30131393_SNP [dm6]	A	G	3.356e^-5	0.733	SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14184736	2R_14184736_SNP [dm3] 2R_18297231_SNP [dm6]	C	G	3.390e^-5	0.733	SYNONYMOUS_CODING CG18538 UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb
3L	5209997	3L_5209997_SNP [dm3] 3L_5216897_SNP [dm6]	A	G	3.404e^-5	0.733	INTRON shep
2L	1465016	2L_1465016_SNP [dm3] 2L_1465016_SNP [dm6]	C	T	3.473e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_D
3R	2884816	3R_2884816_DEL [dm3] 3R_7059094_DEL [dm6]	AAATAA	A	3.478e^-5	0.733	UPSTREAM dj DOWNSTREAM CG1979 INTERGENIC	regulatory region REDfly_CRMs
3R	9346418	3R_9346418_SNP [dm3] 3R_13520696_SNP [dm6]	T	C	3.562e^-5	0.733	INTERGENIC
3R	3393761	3R_3393761_SNP [dm3] 3R_7568039_SNP [dm6]	G	T	3.566e^-5	0.733	INTERGENIC
3R	3393861	3R_3393861_SNP [dm3] 3R_7568139_SNP [dm6]	T	C	3.566e^-5	0.733	INTERGENIC
2L	1449813	2L_1449813_DEL [dm3] 2L_1449813_DEL [dm6]	AAATTCTAATAT...	A	3.599e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	8835359	2R_8835359_SNP [dm3] 2R_12947854_SNP [dm6]	T	C	3.626e^-5	0.733	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2765982	3L_2765982_SNP [dm3] 3L_2765982_SNP [dm6]	A	G	3.672e^-5	0.733	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2R	19364076	2R_19364076_SNP [dm3] 2R_23476553_SNP [dm6]	A	T	3.747e^-5	0.733	UPSTREAM CR43792 & 1 other DOWNSTREAM CR43793 INTRON CG43795
2R	17057657	2R_17057657_SNP [dm3] 2R_21170152_SNP [dm6]	C	T	3.754e^-5	0.733	SYNONYMOUS_CODING LSm1 UPSTREAM Xpd DOWNSTREAM hng1	TF binding site BDTNP1_TFBS_dl
2R	18272025	2R_18272025_SNP [dm3] 2R_22384520_SNP [dm6]	T	A	3.760e^-5	0.733	INTRON CG13506	TF binding site mE1_TFBS_Trl
2L	3095217	2L_3095217_SNP [dm3] 2L_3095217_SNP [dm6]	C	T	3.792e^-5	0.733	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8642966	3R_8642966_SNP [dm3] 3R_12817244_SNP [dm6]	C	G	3.899e^-5	0.733	UPSTREAM CG31345 INTERGENIC
2L	1464765	2L_1464765_SNP [dm3] 2L_1464765_SNP [dm6]	A	G	4.124e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	8670290	3R_8670290_SNP [dm3] 3R_12844568_SNP [dm6]	A	G	4.151e^-5	0.733	INTRON beat-Va
3L	2771850	3L_2771850_SNP [dm3] 3L_2771850_SNP [dm6]	T	C	4.155e^-5	0.733	START_GAINED CG9977 UTR_5_PRIME CG9977 DOWNSTREAM CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	2771862	3L_2771862_SNP [dm3] 3L_2771862_SNP [dm6]	T	C	4.155e^-5	0.733	UTR_5_PRIME CG9977 DOWNSTREAM CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4133920	2L_4133920_INS [dm3] 2L_4133920_INS [dm6]	A	AGCC	4.171e^-5	0.733	INTERGENIC
3L	11029153	3L_11029153_SNP [dm3] 3L_11036053_SNP [dm6]	G	T	4.175e^-5	0.733	DOWNSTREAM CG43693 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	8679648	3R_8679648_SNP [dm3] 3R_12853926_SNP [dm6]	T	G	4.192e^-5	0.733	INTERGENIC
3R	8655595	3R_8655595_SNP [dm3] 3R_12829873_SNP [dm6]	T	A	4.205e^-5	0.733	INTERGENIC
3R	8679144	3R_8679144_SNP [dm3] 3R_12853422_SNP [dm6]	C	T	4.284e^-5	0.733	INTERGENIC
3L	909746	3L_909746_SNP [dm3] 3L_909746_SNP [dm6]	C	T	4.295e^-5	0.733	NON_SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16382849	2L_16382849_SNP [dm3] 2L_16382849_SNP [dm6]	C	T	4.354e^-5	0.733	INTERGENIC
3R	24655951	3R_24655951_SNP [dm3] 3R_28830229_SNP [dm6]	G	T	4.364e^-5	0.733	INTRON WASp
X	20232360	X_20232360_INS [dm3] X_20361333_INS [dm6]	AA	TTTG	4.391e^-5	0.733	INTERGENIC
3R	8641697	3R_8641697_SNP [dm3] 3R_12815975_SNP [dm6]	G	T	4.443e^-5	0.733	INTRON CG31345
3R	8679049	3R_8679049_SNP [dm3] 3R_12853327_SNP [dm6]	A	T	4.460e^-5	0.733	INTERGENIC
2R	14229787	2R_14229787_INS [dm3] 2R_18342282_INS [dm6]	A	AGTG	4.531e^-5	0.733	INTRON sbb	TF binding site BDTNP1_TFBS_da
2R	14229790	2R_14229790_INS [dm3] 2R_18342285_INS [dm6]	A	AT	4.531e^-5	0.733	INTRON sbb	TF binding site BDTNP1_TFBS_da
2L	16633077	2L_16633077_SNP [dm3] 2L_16633077_SNP [dm6]	G	T	4.575e^-5	0.733	INTRON CG42389
3R	9293349	3R_9293349_SNP [dm3] 3R_13467627_SNP [dm6]	C	A	4.684e^-5	0.733	INTERGENIC
3R	8679004	3R_8679004_SNP [dm3] 3R_12853282_SNP [dm6]	C	T	4.688e^-5	0.733	INTERGENIC
3R	8679862	3R_8679862_SNP [dm3] 3R_12854140_SNP [dm6]	A	T	4.737e^-5	0.733	INTERGENIC
2L	7594665	2L_7594665_INS [dm3] 2L_7594665_INS [dm6]	A	AG	4.798e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8667481	3R_8667481_SNP [dm3] 3R_12841759_SNP [dm6]	G	T	4.920e^-5	0.733	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
3R	23217782	3R_23217782_SNP [dm3] 3R_27392060_SNP [dm6]	A	G	4.929e^-5	0.733	INTRON side
2R	12982733	2R_12982733_SNP [dm3] 2R_17095228_SNP [dm6]	T	A	5.015e^-5	0.733	INTRON GstS1	TF binding site mE1_TFBS_cad
3R	8643028	3R_8643028_SNP [dm3] 3R_12817306_SNP [dm6]	T	A	5.016e^-5	0.733	UPSTREAM CG31345 INTERGENIC
X	16355149	X_16355149_SNP [dm3] X_16461116_SNP [dm6]	A	G	5.021e^-5	0.733	UTR_3_PRIME para
2L	10171350	2L_10171350_SNP [dm3] 2L_10171350_SNP [dm6]	T	A	5.046e^-5	0.733	INTRON CG44153
3L	9526884	3L_9526884_SNP [dm3] 3L_9533784_SNP [dm6]	C	G	5.218e^-5	0.733	INTERGENIC
3R	24655952	3R_24655952_SNP [dm3] 3R_28830230_SNP [dm6]	G	T	5.233e^-5	0.733	INTRON WASp
3R	8650294	3R_8650294_SNP [dm3] 3R_12824572_SNP [dm6]	A	G	5.235e^-5	0.733	INTERGENIC
2L	15771031	2L_15771031_SNP [dm3] 2L_15771031_SNP [dm6]	C	T	5.246e^-5	0.733	DOWNSTREAM CG31826 INTRON Ku80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	8548719	3L_8548719_SNP [dm3] 3L_8555619_SNP [dm6]	G	T	5.324e^-5	0.733	INTRON rhea
2L	11291929	2L_11291929_INS [dm3] 2L_11291929_INS [dm6]	A	AA	5.371e^-5	0.733	UPSTREAM CR43409 INTERGENIC
3L	7955005	3L_7955005_SNP [dm3] 3L_7961905_SNP [dm6]	G	A	5.371e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25487343	3R_25487343_SNP [dm3] 3R_29661621_SNP [dm6]	G	A	5.381e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4780210	3L_4780210_INS [dm3] 3L_4780210_INS [dm6]	C	CCA	5.420e^-5	0.733	INTRON RhoGEF64C
3L	7095354	3L_7095354_SNP [dm3] 3L_7102254_SNP [dm6]	A	G	5.448e^-5	0.733	INTRON form3
2R	14277620	2R_14277620_SNP [dm3] 2R_18390115_SNP [dm6]	T	C	5.484e^-5	0.733	SYNONYMOUS_CODING CG15065 DOWNSTREAM CG15068 & 1 other
3R	8645283	3R_8645283_SNP [dm3] 3R_12819561_SNP [dm6]	T	C	5.489e^-5	0.733	INTERGENIC
2L	4133923	2L_4133923_SNP [dm3] 2L_4133923_SNP [dm6]	A	G	5.587e^-5	0.733	INTERGENIC
3L	3914024	3L_3914024_SNP [dm3] 3L_3914024_SNP [dm6]	G	T	5.614e^-5	0.733	INTRON Eip63F-1
3L	11029160	3L_11029160_SNP [dm3] 3L_11036060_SNP [dm6]	A	T	5.638e^-5	0.733	DOWNSTREAM CG43693 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11029168	3L_11029168_SNP [dm3] 3L_11036068_SNP [dm6]	G	T	5.721e^-5	0.733	DOWNSTREAM CG43693 & 1 other INTERGENIC
2R	17410473	2R_17410473_SNP [dm3] 2R_21522968_SNP [dm6]	A	C	5.751e^-5	0.733	UTR_5_PRIME Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	7972187	2L_7972187_SNP [dm3] 2L_7972187_SNP [dm6]	T	G	5.757e^-5	0.733	INTRON Snoo
3R	8640884	3R_8640884_SNP [dm3] 3R_12815162_SNP [dm6]	C	T	5.790e^-5	0.733	INTRON CG31345
2L	12338908	2L_12338908_SNP [dm3] 2L_12338908_SNP [dm6]	C	T	5.846e^-5	0.733	SYNONYMOUS_CODING CG31862
3R	15009024	3R_15009024_SNP [dm3] 3R_19183302_SNP [dm6]	G	T	5.866e^-5	0.733	INTRON CG31475
2L	7270737	2L_7270737_SNP [dm3] 2L_7270737_SNP [dm6]	T	C	5.873e^-5	0.733	INTRON Wnt4
3R	14635365	3R_14635365_SNP [dm3] 3R_18809643_SNP [dm6]	C	G	5.889e^-5	0.733	INTRON CG18208
3L	14191944	3L_14191944_SNP [dm3] 3L_14198844_SNP [dm6]	T	G	5.908e^-5	0.733	INTRON nuf
2R	7865431	2R_7865431_SNP [dm3] 2R_11977926_SNP [dm6]	G	T	5.919e^-5	0.733	SYNONYMOUS_CODING CG30036 DOWNSTREAM CG8290
2R	7865436	2R_7865436_SNP [dm3] 2R_11977931_SNP [dm6]	C	T	5.919e^-5	0.733	NON_SYNONYMOUS_CODING CG30036 DOWNSTREAM CG8290
2L	11762269	2L_11762269_SNP [dm3] 2L_11762269_SNP [dm6]	C	T	5.921e^-5	0.733	INTERGENIC
3R	23208507	3R_23208507_SNP [dm3] 3R_27382785_SNP [dm6]	G	A	5.957e^-5	0.733	INTRON side	TF binding site mE1_TFBS_chinmo
X	1667188	X_1667188_SNP [dm3] X_1773155_SNP [dm6]	A	G	6.049e^-5	0.733	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	11029149	3L_11029149_SNP [dm3] 3L_11036049_SNP [dm6]	G	T	6.055e^-5	0.733	DOWNSTREAM CG43693 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20990624	3R_20990624_SNP [dm3] 3R_25164902_SNP [dm6]	C	T	6.131e^-5	0.733	INTERGENIC
3L	6726857	3L_6726857_SNP [dm3] 3L_6733757_SNP [dm6]	G	T	6.161e^-5	0.733	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	12117787	2L_12117787_SNP [dm3] 2L_12117787_SNP [dm6]	T	C	6.179e^-5	0.733	INTRON CG17211
2R	12418027	2R_12418027_SNP [dm3] 2R_16530522_SNP [dm6]	G	A	6.202e^-5	0.733	INTRON Sema-2a
3L	9324099	3L_9324099_SNP [dm3] 3L_9330999_SNP [dm6]	G	C	6.264e^-5	0.733	INTERGENIC
3R	11210531	3R_11210531_SNP [dm3] 3R_15384809_SNP [dm6]	G	C	6.331e^-5	0.733	INTRON Rbp
2L	1464982	2L_1464982_SNP [dm3] 2L_1464982_SNP [dm6]	A	G	6.338e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	13291423	3L_13291423_SNP [dm3] 3L_13298323_SNP [dm6]	C	T	6.338e^-5	0.733	UPSTREAM CR45255 DOWNSTREAM CR45253 & 1 other EXON CR45254	TF binding site BDTNP1_TFBS_prd
2L	17431626	2L_17431626_SNP [dm3] 2L_17431626_SNP [dm6]	C	A	6.374e^-5	0.733	INTRON Dif
3R	8679884	3R_8679884_SNP [dm3] 3R_12854162_SNP [dm6]	A	G	6.374e^-5	0.733	INTERGENIC
2R	16415959	2R_16415959_SNP [dm3] 2R_20528454_SNP [dm6]	T	C	6.407e^-5	0.733	DOWNSTREAM CG30151 INTERGENIC
3R	5642011	3R_5642011_SNP [dm3] 3R_9816289_SNP [dm6]	G	C	6.456e^-5	0.733	SYNONYMOUS_CODING CG16904	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	14602888	2R_14602888_SNP [dm3] 2R_18715383_SNP [dm6]	G	C	6.489e^-5	0.733	INTERGENIC
2R	16415927	2R_16415927_SNP [dm3] 2R_20528422_SNP [dm6]	A	G	6.564e^-5	0.735	DOWNSTREAM CG30151 INTERGENIC
3L	7483272	3L_7483272_SNP [dm3] 3L_7490172_SNP [dm6]	T	C	6.653e^-5	0.735	INTERGENIC
2L	16759223	2L_16759223_SNP [dm3] 2L_16759223_SNP [dm6]	T	A	6.684e^-5	0.735	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
2R	19134258	2R_19134258_SNP [dm3] 2R_23246735_SNP [dm6]	C	T	6.745e^-5	0.735	UTR_3_PRIME RpL22-like	TF binding site mE1_TFBS_cad
3R	8681010	3R_8681010_SNP [dm3] 3R_12855288_SNP [dm6]	G	A	6.751e^-5	0.735	DOWNSTREAM CG10126 INTERGENIC
3L	14191948	3L_14191948_SNP [dm3] 3L_14198848_SNP [dm6]	A	T	6.778e^-5	0.735	INTRON nuf
2L	17431574	2L_17431574_SNP [dm3] 2L_17431574_SNP [dm6]	G	T	6.782e^-5	0.735	INTRON Dif
2R	9259680	2R_9259680_SNP [dm3] 2R_13372175_SNP [dm6]	G	A	6.828e^-5	0.736	INTERGENIC
2R	15096799	2R_15096799_SNP [dm3] 2R_19209294_SNP [dm6]	C	G	6.957e^-5	0.744	INTRON hppy
2L	17431577	2L_17431577_SNP [dm3] 2L_17431577_SNP [dm6]	A	G	7.009e^-5	0.744	INTRON Dif
3R	8628501	3R_8628501_SNP [dm3] 3R_12802779_SNP [dm6]	A	C	7.056e^-5	0.744	INTERGENIC
2L	7114008	2L_7114008_SNP [dm3] 2L_7114008_SNP [dm6]	A	T	7.114e^-5	0.744	INTRON Pvf3
3R	8658043	3R_8658043_SNP [dm3] 3R_12832321_SNP [dm6]	C	T	7.178e^-5	0.744	INTERGENIC
2R	8816060	2R_8816060_SNP [dm3] 2R_12928555_SNP [dm6]	G	A	7.180e^-5	0.744	UPSTREAM sug INTRON sug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14229795	2R_14229795_SNP [dm3] 2R_18342290_SNP [dm6]	A	C	7.207e^-5	0.744	INTRON sbb	TF binding site BDTNP1_TFBS_da
3R	14634358	3R_14634358_SNP [dm3] 3R_18808636_SNP [dm6]	T	G	7.224e^-5	0.744	INTRON CG18208
3L	2769261	3L_2769261_SNP [dm3] 3L_2769261_SNP [dm6]	G	A	7.273e^-5	0.745	UTR_3_PRIME CG9977 DOWNSTREAM CG1240	TF binding site mE1_TFBS_cad
3L	7095402	3L_7095402_SNP [dm3] 3L_7102302_SNP [dm6]	A	C	7.308e^-5	0.745	INTRON form3
3L	13291060	3L_13291060_SNP [dm3] 3L_13297960_SNP [dm6]	C	T	7.431e^-5	0.748	UPSTREAM CR45254 & 1 other DOWNSTREAM CR45253 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	2884879	3R_2884879_SNP [dm3] 3R_7059157_SNP [dm6]	A	T	7.476e^-5	0.748	UPSTREAM dj DOWNSTREAM CG1979 INTERGENIC	regulatory region REDfly_CRMs
3R	8667317	3R_8667317_SNP [dm3] 3R_12841595_SNP [dm6]	C	A	7.497e^-5	0.748	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
2L	14722213	2L_14722213_INS [dm3] 2L_14722213_INS [dm6]	T	TT	7.533e^-5	0.748	INTERGENIC
3R	8648624	3R_8648624_DEL [dm3] 3R_12822902_DEL [dm6]	GGCAACCGATACCACCCCC...	G	7.535e^-5	0.748	INTERGENIC
2R	20159876	2R_20159876_DEL [dm3] 2R_24272353_DEL [dm6]	CC	C	7.596e^-5	0.748	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22772639	3R_22772639_SNP [dm3] 3R_26946917_SNP [dm6]	G	A	7.637e^-5	0.748	SYNONYMOUS_CODING CG14252 UPSTREAM CG18472 DOWNSTREAM tRNA:CR31071 & 1 other	TF binding site mE1_TFBS_sens
2R	6687022	2R_6687022_SNP [dm3] 2R_10799517_SNP [dm6]	G	A	7.701e^-5	0.748	UPSTREAM CG33144 DOWNSTREAM wde INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11029208	3L_11029208_SNP [dm3] 3L_11036108_SNP [dm6]	T	A	7.730e^-5	0.748	DOWNSTREAM CG43693 & 1 other INTERGENIC
X	4364372	X_4364372_SNP [dm3] X_4470339_SNP [dm6]	C	T	7.778e^-5	0.748	INTRON bi & 1 other
3R	7247954	3R_7247954_SNP [dm3] 3R_11422232_SNP [dm6]	G	A	7.780e^-5	0.748	UTR_5_PRIME CG5270 UPSTREAM ninaG	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7865445	2R_7865445_SNP [dm3] 2R_11977940_SNP [dm6]	T	C	7.896e^-5	0.75	NON_SYNONYMOUS_CODING CG30036 DOWNSTREAM CG8290
3R	19613487	3R_19613487_SNP [dm3] 3R_23787765_SNP [dm6]	T	C	7.898e^-5	0.75	INTRON mbc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14428477	2R_14428477_SNP [dm3] 2R_18540972_SNP [dm6]	A	C	7.940e^-5	0.75	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
3L	6726632	3L_6726632_SNP [dm3] 3L_6733532_SNP [dm6]	T	G	7.985e^-5	0.75	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	10580121	2R_10580121_SNP [dm3] 2R_14692616_SNP [dm6]	A	C	8.040e^-5	0.75	INTRON mspo
3R	8679853	3R_8679853_SNP [dm3] 3R_12854131_SNP [dm6]	T	A	8.082e^-5	0.75	INTERGENIC
2R	7732729	2R_7732729_SNP [dm3] 2R_11845224_SNP [dm6]	C	T	8.167e^-5	0.75	UPSTREAM S2P & 2 others DOWNSTREAM CG43190 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19134728	2R_19134728_SNP [dm3] 2R_23247205_SNP [dm6]	C	T	8.222e^-5	0.75	SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16354501	2R_16354501_SNP [dm3] 2R_20466996_SNP [dm6]	C	T	8.280e^-5	0.75	INTRON CG12484
3R	23237297	3R_23237297_SNP [dm3] 3R_27411575_SNP [dm6]	G	C	8.302e^-5	0.75	INTRON side
2L	11795059	2L_11795059_DEL [dm3] 2L_11795059_DEL [dm6]	TCA	T	8.375e^-5	0.75	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
3L	16720348	3L_16720348_SNP [dm3] 3L_16727248_SNP [dm6]	A	T	8.388e^-5	0.75	UTR_3_PRIME PGRP-SB2 DOWNSTREAM PGRP-SB1	TF binding site mE1_TFBS_cad
3R	9221207	3R_9221207_SNP [dm3] 3R_13395485_SNP [dm6]	G	A	8.543e^-5	0.75	UPSTREAM CCHa2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	18018302	2R_18018302_SNP [dm3] 2R_22130797_SNP [dm6]	A	T	8.551e^-5	0.75	SYNONYMOUS_CODING CG34205 DOWNSTREAM NtR	TF binding site mE1_TFBS_chinmo
2R	14184281	2R_14184281_SNP [dm3] 2R_18296776_SNP [dm6]	C	T	8.617e^-5	0.75	UPSTREAM CG18538 DOWNSTREAM CG18537 INTRON sbb
3R	23298346	3R_23298346_SNP [dm3] 3R_27472624_SNP [dm6]	A	G	8.650e^-5	0.75	INTERGENIC
2R	7865441	2R_7865441_SNP [dm3] 2R_11977936_SNP [dm6]	T	C	8.738e^-5	0.75	NON_SYNONYMOUS_CODING CG30036 DOWNSTREAM CG8290
2L	9187515	2L_9187515_SNP [dm3] 2L_9187515_SNP [dm6]	A	G	8.890e^-5	0.75	INTRON tai	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11563674	X_11563674_SNP [dm3] X_11669641_SNP [dm6]	C	T	8.899e^-5	0.75	SYNONYMOUS_CODING Ptp10D
2L	15331442	2L_15331442_SNP [dm3] 2L_15331442_SNP [dm6]	G	A	8.939e^-5	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7095391	3L_7095391_SNP [dm3] 3L_7102291_SNP [dm6]	T	A	8.973e^-5	0.75	INTRON form3
3L	2783533	3L_2783533_SNP [dm3] 3L_2783533_SNP [dm6]	G	A	8.984e^-5	0.75	INTRON pgant6	TF binding site BDTNP1_TFBS_da
X	16864441	X_16864441_SNP [dm3] X_16970408_SNP [dm6]	T	C	9.003e^-5	0.75	UTR_3_PRIME CG45002
3R	8680215	3R_8680215_SNP [dm3] 3R_12854493_SNP [dm6]	A	C	9.054e^-5	0.75	INTERGENIC
2R	17088278	2R_17088278_SNP [dm3] 2R_21200773_SNP [dm6]	A	G	9.109e^-5	0.75	INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8644920	3R_8644920_DEL [dm3] 3R_12819198_DEL [dm6]	CT	C	9.132e^-5	0.75	INTERGENIC
2L	18249440	2L_18249440_SNP [dm3] 2L_18249440_SNP [dm6]	G	A	9.137e^-5	0.75	INTRON CG42750
2R	7610520	2R_7610520_SNP [dm3] 2R_11723015_SNP [dm6]	A	T	9.172e^-5	0.75	INTRON pyr
2L	14385918	2L_14385918_SNP [dm3] 2L_14385918_SNP [dm6]	T	C	9.187e^-5	0.75	INTERGENIC
X	4947600	X_4947600_SNP [dm3] X_5053567_SNP [dm6]	A	T	9.223e^-5	0.75	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9332255	3R_9332255_SNP [dm3] 3R_13506533_SNP [dm6]	T	A	9.237e^-5	0.75	INTERGENIC
2R	18271934	2R_18271934_SNP [dm3] 2R_22384429_SNP [dm6]	A	T	9.253e^-5	0.75	INTRON CG13506	TF binding site mE1_TFBS_Trl
3L	14056669	3L_14056669_SNP [dm3] 3L_14063569_SNP [dm6]	A	G	9.335e^-5	0.75	INTRON CG32138
2L	16759241	2L_16759241_SNP [dm3] 2L_16759241_SNP [dm6]	A	G	9.341e^-5	0.75	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
2R	19135837	2R_19135837_SNP [dm3] 2R_23248314_SNP [dm6]	C	A	9.403e^-5	0.75	UPSTREAM RpL22-like INTERGENIC
2R	14030997	2R_14030997_SNP [dm3] 2R_18143492_SNP [dm6]	T	G	9.479e^-5	0.75	SYNONYMOUS_CODING pAbp DOWNSTREAM snoRNA:Psi18S-1347a & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9244987	3R_9244987_DEL [dm3] 3R_13419265_DEL [dm6]	TA	T	9.499e^-5	0.75	INTERGENIC
X	4067210	X_4067210_SNP [dm3] X_4173177_SNP [dm6]	G	C	9.520e^-5	0.75	INTRON Fas2
3L	18979297	3L_18979297_SNP [dm3] 3L_18986197_SNP [dm6]	G	A	9.554e^-5	0.75	SYNONYMOUS_CODING CG11619 DOWNSTREAM CG14075
3R	8667323	3R_8667323_SNP [dm3] 3R_12841601_SNP [dm6]	C	A	9.559e^-5	0.75	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
X	18869358	X_18869358_SNP [dm3] X_18975325_SNP [dm6]	C	T	9.643e^-5	0.75	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	9327213	3R_9327213_SNP [dm3] 3R_13501491_SNP [dm6]	G	A	9.668e^-5	0.75	INTERGENIC
3R	25602601	3R_25602601_SNP [dm3] 3R_29776879_SNP [dm6]	C	T	9.703e^-5	0.75	INTRON kay
2L	1247893	2L_1247893_SNP [dm3] 2L_1247893_SNP [dm6]	A	T	9.706e^-5	0.75	INTERGENIC
3L	2771885	3L_2771885_SNP [dm3] 3L_2771885_SNP [dm6]	C	T	9.825e^-5	0.75	UTR_5_PRIME CG9977 DOWNSTREAM CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14184357	2R_14184357_SNP [dm3] 2R_18296852_SNP [dm6]	T	A	9.911e^-5	0.75	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
3L	6726674	3L_6726674_SNP [dm3] 3L_6733574_SNP [dm6]	G	A	9.932e^-5	0.75	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	1465104	2L_1465104_SNP [dm3] 2L_1465104_SNP [dm6]	A	G	1.002e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_D
3R	8638969	3R_8638969_SNP [dm3] 3R_12813247_SNP [dm6]	G	A	1.003e^-4	0.75	INTRON CG31345
2L	8333426	2L_8333426_SNP [dm3] 2L_8333426_SNP [dm6]	T	C	1.010e^-4	0.75	DOWNSTREAM CG14275 INTERGENIC
2R	18426740	2R_18426740_SNP [dm3] 2R_22539235_SNP [dm6]	T	C	1.012e^-4	0.75	INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15331439	2L_15331439_SNP [dm3] 2L_15331439_SNP [dm6]	A	T	1.015e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10210613	3L_10210613_SNP [dm3] 3L_10217513_SNP [dm6]	T	C	1.021e^-4	0.75	DOWNSTREAM CG8065 & 1 other INTERGENIC
X	16072849	X_16072849_SNP [dm3] X_16178816_SNP [dm6]	C	T	1.024e^-4	0.75	INTERGENIC
3R	17984339	3R_17984339_SNP [dm3] 3R_22158617_SNP [dm6]	G	A	1.025e^-4	0.75	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9161655	3R_9161655_SNP [dm3] 3R_13335933_SNP [dm6]	A	G	1.025e^-4	0.75	INTERGENIC
3R	22636829	3R_22636829_SNP [dm3] 3R_26811107_SNP [dm6]	T	A	1.027e^-4	0.75	INTRON Tl
3R	8620312	3R_8620312_SNP [dm3] 3R_12794590_SNP [dm6]	G	T	1.031e^-4	0.75	INTERGENIC
2R	18272732	2R_18272732_SNP [dm3] 2R_22385227_SNP [dm6]	A	G	1.031e^-4	0.75	INTRON CG13506
X	17573888	X_17573888_SNP [dm3] X_17679855_SNP [dm6]	G	A	1.033e^-4	0.75	INTRON chas
2L	13745636	2L_13745636_SNP [dm3] 2L_13745636_SNP [dm6]	A	C	1.036e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	10190300	3R_10190300_DEL [dm3] 3R_14364578_DEL [dm6]	CCTGGCCAGCTC...	C	1.040e^-4	0.75	INTRON NK7.1
2R	19135350	2R_19135350_SNP [dm3] 2R_23247827_SNP [dm6]	C	A	1.043e^-4	0.75	START_GAINED RpL22-like UTR_5_PRIME RpL22-like
3L	7129031	3L_7129031_SNP [dm3] 3L_7135931_SNP [dm6]	C	T	1.052e^-4	0.75	INTRON melt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21017766	3R_21017766_SNP [dm3] 3R_25192044_SNP [dm6]	T	A	1.052e^-4	0.75	SYNONYMOUS_CODING dan UTR_3_PRIME dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20217082	2R_20217082_SNP [dm3] 2R_24329559_SNP [dm6]	T	A	1.053e^-4	0.75	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
2R	7566275	2R_7566275_SNP [dm3] 2R_11678770_SNP [dm6]	G	C	1.059e^-4	0.75	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	9255398	2R_9255398_SNP [dm3] 2R_13367893_SNP [dm6]	C	T	1.063e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9255399	2R_9255399_DEL [dm3] 2R_13367894_DEL [dm6]	TA	T	1.063e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9255407	2R_9255407_SNP [dm3] 2R_13367902_SNP [dm6]	T	A	1.063e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3195129	2L_3195129_DEL [dm3] 2L_3195129_DEL [dm6]	TAACTCA	T	1.066e^-4	0.75	INTRON CG34393
3R	19413429	3R_19413429_SNP [dm3] 3R_23587707_SNP [dm6]	G	A	1.073e^-4	0.75	SYNONYMOUS_CODING CG10182
3R	18912294	3R_18912294_SNP [dm3] 3R_23086572_SNP [dm6]	A	G	1.084e^-4	0.75	INTRON CG13830
2R	7325838	2R_7325838_SNP [dm3] 2R_11438333_SNP [dm6]	C	A	1.086e^-4	0.75	INTRON CG7777	TF binding site mE1_TFBS_HSA
3L	3914019	3L_3914019_SNP [dm3] 3L_3914019_SNP [dm6]	A	C	1.088e^-4	0.75	INTRON Eip63F-1
3R	22876976	3R_22876976_SNP [dm3] 3R_27051254_SNP [dm6]	T	C	1.098e^-4	0.75	DOWNSTREAM TwdlT INTRON RYa-R
3R	14655930	3R_14655930_SNP [dm3] 3R_18830208_SNP [dm6]	C	G	1.098e^-4	0.75	INTRON CG18208
3R	8659394	3R_8659394_SNP [dm3] 3R_12833672_SNP [dm6]	A	G	1.106e^-4	0.75	INTERGENIC
3R	17979378	3R_17979378_SNP [dm3] 3R_22153656_SNP [dm6]	G	T	1.106e^-4	0.75	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6726249	2R_6726249_SNP [dm3] 2R_10838744_SNP [dm6]	T	C	1.109e^-4	0.75	UPSTREAM CG7686 DOWNSTREAM CG30015 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2867868	3R_2867868_SNP [dm3] 3R_7042146_SNP [dm6]	G	A	1.111e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8676034	3R_8676034_SNP [dm3] 3R_12850312_SNP [dm6]	C	G	1.123e^-4	0.75	UPSTREAM CR45587 DOWNSTREAM CR44234 INTERGENIC
3L	7167626	3L_7167626_SNP [dm3] 3L_7174526_SNP [dm6]	T	G	1.127e^-4	0.75	UTR_3_PRIME Dscam2 INTRON Dscam2
3L	15394954	3L_15394954_SNP [dm3] 3L_15401854_SNP [dm6]	G	C	1.129e^-4	0.75	INTERGENIC
2R	6854628	2R_6854628_SNP [dm3] 2R_10967123_SNP [dm6]	G	A	1.131e^-4	0.75	INTERGENIC
X	5816208	X_5816208_SNP [dm3] X_5922175_SNP [dm6]	T	G	1.134e^-4	0.75	INTRON CG3726
2R	13130924	2R_13130924_SNP [dm3] 2R_17243419_SNP [dm6]	C	T	1.140e^-4	0.75	INTRON mbl
2L	3347832	2L_3347832_SNP [dm3] 2L_3347832_SNP [dm6]	A	G	1.142e^-4	0.75	INTRON E23
3R	23222659	3R_23222659_SNP [dm3] 3R_27396937_SNP [dm6]	C	G	1.143e^-4	0.75	INTRON side
2R	12128895	2R_12128895_SNP [dm3] 2R_16241390_SNP [dm6]	A	G	1.150e^-4	0.75	SYNONYMOUS_CODING CG15708 UPSTREAM krimp
3R	8659425	3R_8659425_SNP [dm3] 3R_12833703_SNP [dm6]	G	A	1.151e^-4	0.75	INTERGENIC
2L	9883116	2L_9883116_SNP [dm3] 2L_9883116_SNP [dm6]	A	G	1.162e^-4	0.75	INTRON nAChRalpha6
2L	3195143	2L_3195143_SNP [dm3] 2L_3195143_SNP [dm6]	A	G	1.169e^-4	0.75	INTRON CG34393
2L	12117534	2L_12117534_SNP [dm3] 2L_12117534_SNP [dm6]	T	C	1.193e^-4	0.75	INTRON CG17211
3L	1435875	3L_1435875_SNP [dm3] 3L_1435875_SNP [dm6]	G	A	1.208e^-4	0.75	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15203757	2R_15203757_DEL [dm3] 2R_19316252_DEL [dm6]	GTT	A	1.209e^-4	0.75	INTRON Rgk1
X	16355078	X_16355078_DEL [dm3] X_16461045_DEL [dm6]	AA	A	1.210e^-4	0.75	UTR_3_PRIME para
2R	8667364	2R_8667364_SNP [dm3] 2R_12779859_SNP [dm6]	C	T	1.213e^-4	0.75	UPSTREAM sca DOWNSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2483341	3L_2483341_SNP [dm3] 3L_2483341_SNP [dm6]	C	T	1.224e^-4	0.75	START_GAINED CG45186 UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6777199	2L_6777199_SNP [dm3] 2L_6777199_SNP [dm6]	C	T	1.225e^-4	0.75	SYNONYMOUS_CODING CG17378	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7975101	2L_7975101_SNP [dm3] 2L_7975101_SNP [dm6]	A	G	1.233e^-4	0.75	INTRON Snoo
X	9967103	X_9967103_SNP [dm3] X_10073070_SNP [dm6]	G	A	1.234e^-4	0.75	INTRON ZAP3
3R	19413423	3R_19413423_SNP [dm3] 3R_23587701_SNP [dm6]	G	A	1.237e^-4	0.75	SYNONYMOUS_CODING CG10182
3R	8658024	3R_8658024_SNP [dm3] 3R_12832302_SNP [dm6]	A	G	1.242e^-4	0.75	INTERGENIC
2L	7658773	2L_7658773_SNP [dm3] 2L_7658773_SNP [dm6]	T	A	1.243e^-4	0.75	INTRON Slob
2R	7728497	2R_7728497_SNP [dm3] 2R_11840992_SNP [dm6]	G	T	1.249e^-4	0.75	UPSTREAM CG34229 INTERGENIC
2L	5858622	2L_5858622_SNP [dm3] 2L_5858622_SNP [dm6]	G	C	1.255e^-4	0.75	INTERGENIC
2R	7732790	2R_7732790_SNP [dm3] 2R_11845285_SNP [dm6]	G	A	1.260e^-4	0.75	UPSTREAM Sln & 1 other DOWNSTREAM CG43190 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12708429	2R_12708429_SNP [dm3] 2R_16820924_SNP [dm6]	T	C	1.265e^-4	0.75	INTERGENIC
3L	20059871	3L_20059871_SNP [dm3] 3L_20066771_SNP [dm6]	A	C	1.269e^-4	0.75	INTRON sNPF-R
2L	4549332	2L_4549332_SNP [dm3] 2L_4549332_SNP [dm6]	C	T	1.282e^-4	0.75	INTRON dp
X	9967096	X_9967096_SNP [dm3] X_10073063_SNP [dm6]	T	A	1.283e^-4	0.75	INTRON ZAP3
3R	14374356	3R_14374356_SNP [dm3] 3R_18548634_SNP [dm6]	G	C	1.304e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8670184	3R_8670184_SNP [dm3] 3R_12844462_SNP [dm6]	A	T	1.312e^-4	0.75	INTRON beat-Va
X	18418571	X_18418571_INS [dm3] X_18524538_INS [dm6]	T	AC	1.320e^-4	0.75	INTRON Bx
2R	7566266	2R_7566266_SNP [dm3] 2R_11678761_SNP [dm6]	T	A	1.320e^-4	0.75	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	3195148	2L_3195148_SNP [dm3] 2L_3195148_SNP [dm6]	A	T	1.329e^-4	0.75	INTRON CG34393
3R	8356018	3R_8356018_DEL [dm3] 3R_12530296_DEL [dm6]	AA	A	1.331e^-4	0.75	INTRON Octbeta3R	TF binding site mE1_TFBS_inv
2R	20219231	2R_20219231_SNP [dm3] 2R_24331708_SNP [dm6]	T	G	1.335e^-4	0.75	UTR_3_PRIME slbo
2R	12971632	2R_12971632_SNP [dm3] 2R_17084127_SNP [dm6]	A	G	1.336e^-4	0.75	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8679097	3R_8679097_SNP [dm3] 3R_12853375_SNP [dm6]	C	T	1.339e^-4	0.75	INTERGENIC
2R	1378442	2R_1378442_SNP [dm3] 2R_5490937_SNP [dm6]	A	T	1.350e^-4	0.75	INTRON CG30440
2R	16743487	2R_16743487_SNP [dm3] 2R_20855982_SNP [dm6]	G	C	1.356e^-4	0.75	INTERGENIC
2R	14027840	2R_14027840_SNP [dm3] 2R_18140335_SNP [dm6]	A	G	1.357e^-4	0.75	UPSTREAM pAbp DOWNSTREAM Pcl INTRON pAbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Trl
X	16953345	X_16953345_SNP [dm3] X_17059312_SNP [dm6]	C	T	1.358e^-4	0.75	INTRON CG45002
2L	9826990	2L_9826990_SNP [dm3] 2L_9826990_SNP [dm6]	G	C	1.359e^-4	0.75	INTRON nAChRalpha6
3L	5142163	3L_5142163_SNP [dm3] 3L_5149063_SNP [dm6]	C	T	1.361e^-4	0.75	DOWNSTREAM Gen INTRON Aats-ala-m	TF binding site mE1_TFBS_chinmo
2L	13763484	2L_13763484_SNP [dm3] 2L_13763484_SNP [dm6]	A	G	1.363e^-4	0.75	INTRON TM9SF4
2R	19299991	2R_19299991_SNP [dm3] 2R_23412468_SNP [dm6]	C	G	1.364e^-4	0.75	UTR_3_PRIME CG9812
2L	15810280	2L_15810280_SNP [dm3] 2L_15810280_SNP [dm6]	C	T	1.367e^-4	0.75	DOWNSTREAM CG42876 EXON CR44602
2L	11920116	2L_11920116_SNP [dm3] 2L_11920116_SNP [dm6]	G	T	1.369e^-4	0.75	INTRON Pde1c
X	4071020	X_4071020_SNP [dm3] X_4176987_SNP [dm6]	G	A	1.371e^-4	0.75	INTRON Fas2
2L	15565599	2L_15565599_SNP [dm3] 2L_15565599_SNP [dm6]	G	T	1.376e^-4	0.75	INTRON kek3
2L	20970154	2L_20970154_SNP [dm3] 2L_20970154_SNP [dm6]	A	G	1.378e^-4	0.75	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13293705	3R_13293705_SNP [dm3] 3R_17467983_SNP [dm6]	C	T	1.379e^-4	0.75	INTERGENIC
2R	16916927	2R_16916927_SNP [dm3] 2R_21029422_SNP [dm6]	T	C	1.379e^-4	0.75	EXON CR45148
3R	8534318	3R_8534318_SNP [dm3] 3R_12708596_SNP [dm6]	C	T	1.381e^-4	0.75	SYNONYMOUS_CODING mus308	TF binding site mE1_TFBS_sens
X	5820779	X_5820779_SNP [dm3] X_5926746_SNP [dm6]	T	C	1.381e^-4	0.75	INTRON CG3726
X	17440005	X_17440005_SNP [dm3] X_17545972_SNP [dm6]	A	G	1.384e^-4	0.75	INTRON CG43658
3L	4981165	3L_4981165_SNP [dm3] 3L_4981165_SNP [dm6]	C	T	1.384e^-4	0.75	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
2R	3989680	2R_3989680_SNP [dm3] 2R_8102175_SNP [dm6]	G	A	1.390e^-4	0.75	UTR_3_PRIME CG11210 DOWNSTREAM Cul4
X	1668883	X_1668883_SNP [dm3] X_1774850_SNP [dm6]	C	T	1.393e^-4	0.75	UTR_5_PRIME Adar INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12117577	2L_12117577_SNP [dm3] 2L_12117577_SNP [dm6]	T	A	1.399e^-4	0.75	INTRON CG17211
3R	8649315	3R_8649315_SNP [dm3] 3R_12823593_SNP [dm6]	A	C	1.403e^-4	0.75	INTERGENIC
2R	18561466	2R_18561466_SNP [dm3] 2R_22673961_SNP [dm6]	A	T	1.413e^-4	0.75	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC	TF binding site mE1_TFBS_sens
2R	17377632	2R_17377632_SNP [dm3] 2R_21490127_SNP [dm6]	A	G	1.414e^-4	0.75	INTRON Fkbp14
2L	7635321	2L_7635321_SNP [dm3] 2L_7635321_SNP [dm6]	A	T	1.419e^-4	0.75	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	17927692	2R_17927692_SNP [dm3] 2R_22040187_SNP [dm6]	G	A	1.424e^-4	0.75	UPSTREAM CG34370 INTERGENIC
3R	19413447	3R_19413447_SNP [dm3] 3R_23587725_SNP [dm6]	G	A	1.429e^-4	0.75	SYNONYMOUS_CODING CG10182
3L	16469112	3L_16469112_SNP [dm3] 3L_16476012_SNP [dm6]	G	T	1.434e^-4	0.75	INTRON CG33158 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18495138	3R_18495138_SNP [dm3] 3R_22669416_SNP [dm6]	A	T	1.437e^-4	0.75	INTRON CG45058
X	11563680	X_11563680_SNP [dm3] X_11669647_SNP [dm6]	T	C	1.438e^-4	0.75	SYNONYMOUS_CODING Ptp10D
X	9967107	X_9967107_SNP [dm3] X_10073074_SNP [dm6]	G	A	1.444e^-4	0.75	INTRON ZAP3
3R	8650539	3R_8650539_SNP [dm3] 3R_12824817_SNP [dm6]	G	C	1.447e^-4	0.75	INTERGENIC
2R	8835327	2R_8835327_DEL [dm3] 2R_12947822_DEL [dm6]	CCAGAGTGCGCAT...	C	1.447e^-4	0.75	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6687068	2R_6687068_SNP [dm3] 2R_10799563_SNP [dm6]	C	G	1.450e^-4	0.75	UPSTREAM CG33144 DOWNSTREAM wde INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15491708	3L_15491708_SNP [dm3] 3L_15498608_SNP [dm6]	T	G	1.455e^-4	0.75	SYNONYMOUS_CODING CG7276 UPSTREAM CG7275 DOWNSTREAM CG13455	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3420311	2L_3420311_INS [dm3] 2L_3420311_INS [dm6]	A	AG	1.461e^-4	0.75	INTRON pgant2
X	1666943	X_1666943_SNP [dm3] X_1772910_SNP [dm6]	A	G	1.466e^-4	0.75	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	9066457	2R_9066457_SNP [dm3] 2R_13178952_SNP [dm6]	T	G	1.468e^-4	0.75	SYNONYMOUS_CODING CG17724 UTR_3_PRIME seq & 1 other DOWNSTREAM seq	TF binding site mE1_TFBS_cad
2L	17502307	2L_17502307_SNP [dm3] 2L_17502307_SNP [dm6]	T	A	1.474e^-4	0.75	INTRON Dhc36C
2R	17620865	2R_17620865_SNP [dm3] 2R_21733360_SNP [dm6]	C	T	1.476e^-4	0.75	INTERGENIC
3L	2783577	3L_2783577_DEL [dm3] 3L_2783577_DEL [dm6]	TTTTATTTTCAAAGT...	T	1.479e^-4	0.75	INTRON pgant6
3L	2771242	3L_2771242_SNP [dm3] 3L_2771242_SNP [dm6]	T	C	1.482e^-4	0.75	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12589155	2R_12589155_SNP [dm3] 2R_16701650_SNP [dm6]	C	A	1.488e^-4	0.75	INTRON CG30463
3R	8680255	3R_8680255_SNP [dm3] 3R_12854533_SNP [dm6]	T	G	1.490e^-4	0.75	INTERGENIC
3R	11890851	3R_11890851_SNP [dm3] 3R_16065129_SNP [dm6]	A	G	1.491e^-4	0.75	INTRON CG10185
3L	7278580	3L_7278580_SNP [dm3] 3L_7285480_SNP [dm6]	G	C	1.492e^-4	0.75	INTRON unc-13-4A
X	16659901	X_16659901_SNP [dm3] X_16765868_SNP [dm6]	A	G	1.495e^-4	0.75	INTRON if
3R	2909290	3R_2909290_SNP [dm3] 3R_7083568_SNP [dm6]	C	A	1.502e^-4	0.75	SYNONYMOUS_CODING CG1091 DOWNSTREAM Dpck
3R	6670116	3R_6670116_SNP [dm3] 3R_10844394_SNP [dm6]	G	T	1.506e^-4	0.75	INTRON Cad86C
3R	2887456	3R_2887456_SNP [dm3] 3R_7061734_SNP [dm6]	G	A	1.507e^-4	0.75	SYNONYMOUS_CODING djl UPSTREAM CG1988
2L	1548603	2L_1548603_SNP [dm3] 2L_1548603_SNP [dm6]	G	C	1.508e^-4	0.75	INTERGENIC
2L	1862933	2L_1862933_SNP [dm3] 2L_1862933_SNP [dm6]	G	C	1.508e^-4	0.75	INTRON CG31663
3R	9189163	3R_9189163_SNP [dm3] 3R_13363441_SNP [dm6]	C	T	1.512e^-4	0.75	INTRON poly
3R	22887010	3R_22887010_SNP [dm3] 3R_27061288_SNP [dm6]	G	A	1.520e^-4	0.75	NON_SYNONYMOUS_CODING Nep5 UPSTREAM CG34292
3R	9278385	3R_9278385_SNP [dm3] 3R_13452663_SNP [dm6]	A	G	1.522e^-4	0.75	INTRON CG14372
2R	15853325	2R_15853325_SNP [dm3] 2R_19965820_SNP [dm6]	T	G	1.524e^-4	0.75	INTERGENIC
X	16691584	X_16691584_SNP [dm3] X_16797551_SNP [dm6]	A	G	1.544e^-4	0.75	UTR_3_PRIME CG9132 DOWNSTREAM CG4768	TF binding site BDTNP1_TFBS_dl
X	2412614	X_2412614_SNP [dm3] X_2518581_SNP [dm6]	A	T	1.547e^-4	0.75	UPSTREAM trol INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21207861	3R_21207861_SNP [dm3] 3R_25382139_SNP [dm6]	T	A	1.552e^-4	0.75	SYNONYMOUS_CODING alrm INTRON Fur1
3R	8667526	3R_8667526_SNP [dm3] 3R_12841804_SNP [dm6]	A	T	1.559e^-4	0.75	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
X	4071136	X_4071136_SNP [dm3] X_4177103_SNP [dm6]	A	G	1.561e^-4	0.75	INTRON Fas2
2L	3347808	2L_3347808_SNP [dm3] 2L_3347808_SNP [dm6]	C	T	1.564e^-4	0.75	INTRON E23
2R	18018014	2R_18018014_SNP [dm3] 2R_22130509_SNP [dm6]	C	T	1.565e^-4	0.75	SYNONYMOUS_CODING CG34205 DOWNSTREAM NtR	TF binding site mE1_TFBS_chinmo
X	1666909	X_1666909_SNP [dm3] X_1772876_SNP [dm6]	C	A	1.567e^-4	0.75	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3348274	2L_3348274_SNP [dm3] 2L_3348274_SNP [dm6]	A	T	1.568e^-4	0.75	INTRON E23
X	16630143	X_16630143_SNP [dm3] X_16736110_SNP [dm6]	T	A	1.569e^-4	0.75	DOWNSTREAM TwdlY INTRON CG9634
2R	16965443	2R_16965443_SNP [dm3] 2R_21077938_SNP [dm6]	A	G	1.571e^-4	0.75	INTRON Treh
2L	3348299	2L_3348299_SNP [dm3] 2L_3348299_SNP [dm6]	G	C	1.576e^-4	0.75	INTRON E23
2L	1789751	2L_1789751_SNP [dm3] 2L_1789751_SNP [dm6]	A	G	1.578e^-4	0.75	NON_SYNONYMOUS_CODING Gr22d DOWNSTREAM Gr22c	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15279710	X_15279710_SNP [dm3] X_15385677_SNP [dm6]	T	A	1.578e^-4	0.75	UPSTREAM CG9164 DOWNSTREAM Cngl INTERGENIC
3L	10221753	3L_10221753_SNP [dm3] 3L_10228653_SNP [dm6]	A	G	1.598e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	2765885	3L_2765885_SNP [dm3] 3L_2765885_SNP [dm6]	T	A	1.599e^-4	0.75	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
3L	19336594	3L_19336594_SNP [dm3] 3L_19343494_SNP [dm6]	G	A	1.604e^-4	0.75	NON_SYNONYMOUS_CODING CG32206
2R	7064965	2R_7064965_SNP [dm3] 2R_11177460_SNP [dm6]	A	G	1.609e^-4	0.75	INTRON shn
X	5820782	X_5820782_SNP [dm3] X_5926749_SNP [dm6]	A	T	1.611e^-4	0.75	INTRON CG3726
2L	17250656	2L_17250656_SNP [dm3] 2L_17250656_SNP [dm6]	A	T	1.612e^-4	0.75	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3L	14187859	3L_14187859_SNP [dm3] 3L_14194759_SNP [dm6]	T	G	1.618e^-4	0.75	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14027875	2R_14027875_SNP [dm3] 2R_18140370_SNP [dm6]	C	G	1.621e^-4	0.75	UPSTREAM pAbp DOWNSTREAM Pcl INTRON pAbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Trl
3R	20348183	3R_20348183_SNP [dm3] 3R_24522461_SNP [dm6]	T	G	1.622e^-4	0.75	DOWNSTREAM CG13622 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4901645	3R_4901645_SNP [dm3] 3R_9075923_SNP [dm6]	A	C	1.624e^-4	0.75	INTRON pum
3R	9856232	3R_9856232_SNP [dm3] 3R_14030510_SNP [dm6]	C	T	1.628e^-4	0.75	SYNONYMOUS_CODING Cyp6d5 INTRON rdx	TF binding site BDTNP1_TFBS_dl
3R	9325020	3R_9325020_SNP [dm3] 3R_13499298_SNP [dm6]	A	C	1.629e^-4	0.75	INTERGENIC
3R	5638835	3R_5638835_SNP [dm3] 3R_9813113_SNP [dm6]	T	A	1.630e^-4	0.75	INTRON CR44035 & 1 other
X	17519118	X_17519118_SNP [dm3] X_17625085_SNP [dm6]	A	G	1.631e^-4	0.75	UTR_3_PRIME stas INTRON stas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11597810	2L_11597810_SNP [dm3] 2L_11597810_SNP [dm6]	A	G	1.643e^-4	0.75	INTRON kek2
3R	26494407	3R_26494407_SNP [dm3] 3R_30668685_SNP [dm6]	C	T	1.645e^-4	0.75	INTERGENIC
2L	3174808	2L_3174808_SNP [dm3] 2L_3174808_SNP [dm6]	T	A	1.651e^-4	0.75	UPSTREAM CG31698 DOWNSTREAM CG34393 & 1 other INTERGENIC
2R	10248303	2R_10248303_SNP [dm3] 2R_14360798_SNP [dm6]	G	A	1.653e^-4	0.75	UPSTREAM Arc1 EXON CR10102	TF binding site mE1_TFBS_chinmo
2R	18564041	2R_18564041_SNP [dm3] 2R_22676536_SNP [dm6]	A	G	1.655e^-4	0.75	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12117519	2L_12117519_SNP [dm3] 2L_12117519_SNP [dm6]	G	A	1.655e^-4	0.75	INTRON CG17211
2R	7566262	2R_7566262_SNP [dm3] 2R_11678757_SNP [dm6]	G	A	1.656e^-4	0.75	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	7972612	2L_7972612_SNP [dm3] 2L_7972612_SNP [dm6]	A	G	1.665e^-4	0.75	INTRON Snoo
2R	18561408	2R_18561408_SNP [dm3] 2R_22673903_SNP [dm6]	G	A	1.667e^-4	0.75	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC
2R	7732727	2R_7732727_SNP [dm3] 2R_11845222_SNP [dm6]	C	A	1.667e^-4	0.75	UPSTREAM S2P & 2 others DOWNSTREAM CG43190 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9967071	X_9967071_SNP [dm3] X_10073038_SNP [dm6]	T	A	1.669e^-4	0.75	INTRON ZAP3
X	1666906	X_1666906_SNP [dm3] X_1772873_SNP [dm6]	C	G	1.670e^-4	0.75	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8651940	3R_8651940_INS [dm3] 3R_12826218_INS [dm6]	A	AA	1.672e^-4	0.75	INTERGENIC
2L	12176995	2L_12176995_DEL [dm3] 2L_12176995_DEL [dm6]	ATA	A	1.672e^-4	0.75	INTRON aret & 1 other
2L	13828840	2L_13828840_SNP [dm3] 2L_13828840_SNP [dm6]	C	A	1.676e^-4	0.75	SYNONYMOUS_CODING Arpc1 UPSTREAM Orc5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5408498	2R_5408498_SNP [dm3] 2R_9520993_SNP [dm6]	T	C	1.689e^-4	0.75	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15013169	2L_15013169_SNP [dm3] 2L_15013169_SNP [dm6]	C	T	1.689e^-4	0.75	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2265341	2L_2265341_SNP [dm3] 2L_2265341_SNP [dm6]	A	G	1.691e^-4	0.75	UPSTREAM CG34049 INTERGENIC
2L	3570844	2L_3570844_INS [dm3] 2L_3570844_INS [dm6]	T	TTCCAATGT	1.721e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
3L	9675344	3L_9675344_SNP [dm3] 3L_9682244_SNP [dm6]	C	A	1.723e^-4	0.75	SYNONYMOUS_CODING alphaTub67C	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8679775	3R_8679775_SNP [dm3] 3R_12854053_SNP [dm6]	T	C	1.726e^-4	0.75	INTERGENIC
X	10959240	X_10959240_SNP [dm3] X_11065207_SNP [dm6]	T	A	1.736e^-4	0.75	UPSTREAM CR45614 INTERGENIC
2R	14029651	2R_14029651_SNP [dm3] 2R_18142146_SNP [dm6]	C	T	1.739e^-4	0.75	UPSTREAM snoRNA:Psi18S-1347a & 1 other INTRON pAbp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7277587	3L_7277587_SNP [dm3] 3L_7284487_SNP [dm6]	C	A	1.740e^-4	0.75	INTRON unc-13-4A
3R	8680245	3R_8680245_SNP [dm3] 3R_12854523_SNP [dm6]	G	A	1.744e^-4	0.75	INTERGENIC
3L	4645496	3L_4645496_SNP [dm3] 3L_4645496_SNP [dm6]	T	A	1.745e^-4	0.75	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16630566	X_16630566_SNP [dm3] X_16736533_SNP [dm6]	T	C	1.747e^-4	0.75	DOWNSTREAM TwdlY INTRON CG9634
X	21152528	X_21152528_DEL [dm3] X_21281501_DEL [dm6]	ACTATAGCGATCAGC...	A	1.753e^-4	0.75	UPSTREAM CG32521 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	23201817	3R_23201817_INS [dm3] 3R_27376095_INS [dm6]	T	TACT	1.754e^-4	0.75	UTR_3_PRIME side
3R	22773334	3R_22773334_SNP [dm3] 3R_26947612_SNP [dm6]	C	T	1.754e^-4	0.75	UPSTREAM CG18472 & 2 others DOWNSTREAM CG14252 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8333457	2L_8333457_SNP [dm3] 2L_8333457_SNP [dm6]	G	A	1.755e^-4	0.75	DOWNSTREAM CG14275 INTERGENIC
3R	8664263	3R_8664263_SNP [dm3] 3R_12838541_SNP [dm6]	A	G	1.756e^-4	0.75	INTERGENIC
3L	12687171	3L_12687171_SNP [dm3] 3L_12694071_SNP [dm6]	A	T	1.759e^-4	0.75	UTR_5_PRIME mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8640897	3R_8640897_SNP [dm3] 3R_12815175_SNP [dm6]	T	A	1.761e^-4	0.75	INTRON CG31345
3L	12296011	3L_12296011_SNP [dm3] 3L_12302911_SNP [dm6]	G	A	1.761e^-4	0.75	UPSTREAM CR44551 DOWNSTREAM CR44550 INTERGENIC
3L	8236355	3L_8236355_SNP [dm3] 3L_8243255_SNP [dm6]	C	A	1.766e^-4	0.75	INTRON Dscam4
2L	11795065	2L_11795065_SNP [dm3] 2L_11795065_SNP [dm6]	T	A	1.767e^-4	0.75	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
3L	8553192	3L_8553192_SNP [dm3] 3L_8560092_SNP [dm6]	G	A	1.767e^-4	0.75	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	8638720	3R_8638720_DEL [dm3] 3R_12812998_DEL [dm6]	TCTCGGTATG	T	1.772e^-4	0.75	INTRON CG31345
3R	8641148	3R_8641148_SNP [dm3] 3R_12815426_SNP [dm6]	G	A	1.772e^-4	0.75	INTRON CG31345
3R	6640242	3R_6640242_SNP [dm3] 3R_10814520_SNP [dm6]	C	T	1.785e^-4	0.75	NON_SYNONYMOUS_CODING CG14693 UPSTREAM CG14693 & 1 other
2L	11870522	2L_11870522_SNP [dm3] 2L_11870522_SNP [dm6]	C	T	1.793e^-4	0.75	INTRON Pde1c
2R	8108079	2R_8108079_SNP [dm3] 2R_12220574_SNP [dm6]	G	A	1.798e^-4	0.75	INTERGENIC
X	8338634	X_8338634_SNP [dm3] X_8444601_SNP [dm6]	C	T	1.798e^-4	0.75	INTERGENIC
2R	7732725	2R_7732725_SNP [dm3] 2R_11845220_SNP [dm6]	T	C	1.799e^-4	0.75	UPSTREAM S2P & 2 others DOWNSTREAM CG43190 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7986343	2L_7986343_SNP [dm3] 2L_7986343_SNP [dm6]	G	A	1.803e^-4	0.75	NON_SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
2R	19133838	2R_19133838_SNP [dm3] 2R_23246315_SNP [dm6]	T	G	1.804e^-4	0.75	UPSTREAM yip3 DOWNSTREAM RpL22-like INTERGENIC
3R	23482833	3R_23482833_SNP [dm3] 3R_27657111_SNP [dm6]	C	A	1.806e^-4	0.75	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
3L	10221751	3L_10221751_SNP [dm3] 3L_10228651_SNP [dm6]	C	T	1.820e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	12772640	3L_12772640_SNP [dm3] 3L_12779540_SNP [dm6]	T	C	1.833e^-4	0.75	SYNONYMOUS_CODING CG10969 UPSTREAM CG32106	TF binding site mE1_TFBS_sens
3R	8651160	3R_8651160_SNP [dm3] 3R_12825438_SNP [dm6]	A	G	1.833e^-4	0.75	INTERGENIC
2R	18582889	2R_18582889_SNP [dm3] 2R_22695384_SNP [dm6]	G	T	1.834e^-4	0.75	SPLICE_SITE_REGION robo INTRON robo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8659549	3R_8659549_SNP [dm3] 3R_12833827_SNP [dm6]	A	T	1.838e^-4	0.75	INTERGENIC
2R	14184394	2R_14184394_DEL [dm3] 2R_18296889_DEL [dm6]	TGGACTATTCGT...	T	1.841e^-4	0.75	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
3R	20884299	3R_20884299_SNP [dm3] 3R_25058577_SNP [dm6]	C	T	1.847e^-4	0.75	UPSTREAM Unc-13-4B INTRON Unc-13-4B
2L	6322688	2L_6322688_SNP [dm3] 2L_6322688_SNP [dm6]	C	T	1.851e^-4	0.75	UTR_3_PRIME Ddr
2R	5941449	2R_5941449_SNP [dm3] 2R_10053944_SNP [dm6]	A	T	1.852e^-4	0.75	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
3L	2782538	3L_2782538_SNP [dm3] 3L_2782538_SNP [dm6]	A	G	1.862e^-4	0.75	UTR_5_PRIME pgant6 DOWNSTREAM mRpS35 INTRON pgant6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7421970	3L_7421970_SNP [dm3] 3L_7428870_SNP [dm6]	T	C	1.863e^-4	0.75	INTRON CG42458
3L	2769999	3L_2769999_SNP [dm3] 3L_2769999_SNP [dm6]	G	T	1.865e^-4	0.75	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8689581	3R_8689581_SNP [dm3] 3R_12863859_SNP [dm6]	G	C	1.867e^-4	0.75	INTERGENIC
2R	6336591	2R_6336591_SNP [dm3] 2R_10449086_SNP [dm6]	T	C	1.872e^-4	0.75	DOWNSTREAM Cyp49a1 INTRON Galphao
2R	6594967	2R_6594967_SNP [dm3] 2R_10707462_SNP [dm6]	T	C	1.879e^-4	0.75	SYNONYMOUS_CODING stan	TF binding site mE1_TFBS_cad
3L	4645488	3L_4645488_SNP [dm3] 3L_4645488_SNP [dm6]	C	T	1.879e^-4	0.75	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14354002	2L_14354002_SNP [dm3] 2L_14354002_SNP [dm6]	G	A	1.882e^-4	0.75	SYNONYMOUS_CODING l_2_34Fd	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9253522	2R_9253522_SNP [dm3] 2R_13366017_SNP [dm6]	G	A	1.887e^-4	0.75	INTERGENIC
2R	18561413	2R_18561413_SNP [dm3] 2R_22673908_SNP [dm6]	G	A	1.887e^-4	0.75	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC
2R	18030720	2R_18030720_SNP [dm3] 2R_22143215_SNP [dm6]	G	A	1.889e^-4	0.75	INTRON a	TF binding site BDTNP1_TFBS_twi
2L	18729399	2L_18729399_SNP [dm3] 2L_18729399_SNP [dm6]	A	G	1.892e^-4	0.75	INTRON CG10348
2L	9126430	2L_9126430_SNP [dm3] 2L_9126430_SNP [dm6]	A	T	1.898e^-4	0.75	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8687651	3R_8687651_SNP [dm3] 3R_12861929_SNP [dm6]	G	A	1.904e^-4	0.75	INTERGENIC
2R	18495619	2R_18495619_DEL [dm3] 2R_22608114_DEL [dm6]	ATGA	A	1.905e^-4	0.75	UPSTREAM Vps20 DOWNSTREAM snoRNA:Psi28S-1175a & 4 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12117546	2L_12117546_SNP [dm3] 2L_12117546_SNP [dm6]	A	C	1.907e^-4	0.75	INTRON CG17211
3R	8676839	3R_8676839_SNP [dm3] 3R_12851117_SNP [dm6]	G	A	1.916e^-4	0.75	UPSTREAM CR44234 INTERGENIC
2R	14428238	2R_14428238_DEL [dm3] 2R_18540733_DEL [dm6]	GAGG	T	1.918e^-4	0.75	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
3R	6076526	3R_6076526_INS [dm3] 3R_10250804_INS [dm6]	A	AATTACGT	1.920e^-4	0.75	UPSTREAM CG3999 DOWNSTREAM CG42795 INTRON CG42795
3R	18661209	3R_18661209_SNP [dm3] 3R_22835487_SNP [dm6]	T	A	1.923e^-4	0.75	INTERGENIC
2R	19800001	2R_19800001_SNP [dm3] 2R_23912478_SNP [dm6]	G	T	1.925e^-4	0.75	INTRON kcc	TF binding site BDTNP1_TFBS_twi
2L	9871698	2L_9871698_SNP [dm3] 2L_9871698_SNP [dm6]	T	C	1.927e^-4	0.75	INTRON nAChRalpha6
3L	909840	3L_909840_SNP [dm3] 3L_909840_SNP [dm6]	C	A	1.929e^-4	0.75	SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19282858	2L_19282858_SNP [dm3] 2L_19282858_SNP [dm6]	T	C	1.932e^-4	0.75	INTERGENIC
3R	16393709	3R_16393709_SNP [dm3] 3R_20567987_SNP [dm6]	C	G	1.936e^-4	0.75	INTRON CG5191
2R	18518205	2R_18518205_SNP [dm3] 2R_22630700_SNP [dm6]	G	A	1.944e^-4	0.75	INTRON CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18518353	2R_18518353_SNP [dm3] 2R_22630848_SNP [dm6]	C	T	1.944e^-4	0.75	INTRON CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7635075	2L_7635075_SNP [dm3] 2L_7635075_SNP [dm6]	C	A	1.949e^-4	0.75	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20385261	2R_20385261_SNP [dm3] 2R_24497738_SNP [dm6]	C	T	1.950e^-4	0.75	UPSTREAM Yu DOWNSTREAM Crtp INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3195145	2L_3195145_SNP [dm3] 2L_3195145_SNP [dm6]	A	G	1.956e^-4	0.75	INTRON CG34393
2L	6025169	2L_6025169_SNP [dm3] 2L_6025169_SNP [dm6]	T	C	1.957e^-4	0.75	UPSTREAM CG9107 DOWNSTREAM CG9109 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
X	1667184	X_1667184_SNP [dm3] X_1773151_SNP [dm6]	A	T	1.960e^-4	0.75	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	10319606	X_10319606_SNP [dm3] X_10425573_SNP [dm6]	T	A	1.969e^-4	0.751	INTRON CG32683
X	10319615	X_10319615_INS [dm3] X_10425582_INS [dm6]	T	TT	1.969e^-4	0.751	INTRON CG32683
X	18862015	X_18862015_SNP [dm3] X_18967982_SNP [dm6]	A	G	1.986e^-4	0.754	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	5695696	3L_5695696_SNP [dm3] 3L_5702596_SNP [dm6]	G	A	1.988e^-4	0.754	INTRON sif
X	16354935	X_16354935_SNP [dm3] X_16460902_SNP [dm6]	G	A	1.992e^-4	0.754	UTR_3_PRIME para
2L	11866286	2L_11866286_SNP [dm3] 2L_11866286_SNP [dm6]	T	A	1.993e^-4	0.754	INTRON Pde1c
3R	16493510	3R_16493510_SNP [dm3] 3R_20667788_SNP [dm6]	C	T	1.998e^-4	0.754	INTERGENIC
2L	4502788	2L_4502788_SNP [dm3] 2L_4502788_SNP [dm6]	G	C	2.007e^-4	0.755	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2766940	3L_2766940_SNP [dm3] 3L_2766940_SNP [dm6]	T	C	2.008e^-4	0.755	UPSTREAM CG1240 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	17892856	2R_17892856_SNP [dm3] 2R_22005351_SNP [dm6]	G	T	2.020e^-4	0.758	INTRON CG34370
3R	9244896	3R_9244896_MNP [dm3] 3R_13419174_MNP [dm6]	TCA	ATT	2.025e^-4	0.758	INTERGENIC
2L	14069663	2L_14069663_SNP [dm3] 2L_14069663_SNP [dm6]	C	G	2.029e^-4	0.758	INTRON nAChRalpha5
2L	16364591	2L_16364591_SNP [dm3] 2L_16364591_SNP [dm6]	T	G	2.035e^-4	0.759	INTERGENIC	regulatory region REDfly_CRMs
X	20267979	X_20267979_SNP [dm3] X_20396952_SNP [dm6]	G	T	2.062e^-4	0.761	INTRON HERC2	transposable element FlyBase
2R	20219246	2R_20219246_SNP [dm3] 2R_24331723_SNP [dm6]	T	C	2.067e^-4	0.761	UTR_3_PRIME slbo
2R	9660385	2R_9660385_SNP [dm3] 2R_13772880_SNP [dm6]	G	C	2.071e^-4	0.761	INTRON Cpr50Ca
2R	19008724	2R_19008724_SNP [dm3] 2R_23121201_SNP [dm6]	C	G	2.071e^-4	0.761	INTERGENIC
2L	12117506	2L_12117506_SNP [dm3] 2L_12117506_SNP [dm6]	A	T	2.082e^-4	0.761	INTRON CG17211
3R	8645337	3R_8645337_SNP [dm3] 3R_12819615_SNP [dm6]	C	T	2.086e^-4	0.761	INTERGENIC
3L	3892711	3L_3892711_SNP [dm3] 3L_3892711_SNP [dm6]	C	G	2.088e^-4	0.761	START_GAINED Fie UTR_5_PRIME Fie UPSTREAM Fie & 1 other DOWNSTREAM snRNA:U11
3R	14374383	3R_14374383_SNP [dm3] 3R_18548661_SNP [dm6]	C	T	2.093e^-4	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15392259	3R_15392259_SNP [dm3] 3R_19566537_SNP [dm6]	T	C	2.093e^-4	0.761	INTRON Dys
2R	7328559	2R_7328559_SNP [dm3] 2R_11441054_SNP [dm6]	T	C	2.094e^-4	0.761	INTRON CG7777	TF binding site mE1_TFBS_cad
2L	3348342	2L_3348342_DEL [dm3] 2L_3348342_DEL [dm6]	ACGCACATATTTA...	A	2.094e^-4	0.761	INTRON E23
2R	17084975	2R_17084975_SNP [dm3] 2R_21197470_SNP [dm6]	A	C	2.095e^-4	0.761	INTRON Lapsyn
3R	8675118	3R_8675118_SNP [dm3] 3R_12849396_SNP [dm6]	C	G	2.100e^-4	0.761	UPSTREAM beat-Va DOWNSTREAM CR44234 EXON CR45587
2R	19425848	2R_19425848_SNP [dm3] 2R_23538325_SNP [dm6]	C	T	2.102e^-4	0.761	UTR_5_PRIME bw DOWNSTREAM ppk3	TF binding site mE1_TFBS_chinmo
3R	23150192	3R_23150192_INS [dm3] 3R_27324470_INS [dm6]	C	CGGATGGAC	2.103e^-4	0.761	INTERGENIC
X	16630124	X_16630124_SNP [dm3] X_16736091_SNP [dm6]	T	A	2.113e^-4	0.761	DOWNSTREAM TwdlY INTRON CG9634
2L	2834264	2L_2834264_SNP [dm3] 2L_2834264_SNP [dm6]	T	C	2.114e^-4	0.761	DOWNSTREAM CG3119 INTERGENIC
3R	15072578	3R_15072578_SNP [dm3] 3R_19246856_SNP [dm6]	C	T	2.115e^-4	0.761	UPSTREAM unc79 DOWNSTREAM CG5217 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14192053	3L_14192053_SNP [dm3] 3L_14198953_SNP [dm6]	G	A	2.117e^-4	0.761	INTRON nuf
3L	18287544	3L_18287544_SNP [dm3] 3L_18294444_SNP [dm6]	G	A	2.141e^-4	0.762	UPSTREAM CR43306 & 1 other INTERGENIC	TF binding site mE1_TFBS_Kr
X	1667387	X_1667387_SNP [dm3] X_1773354_SNP [dm6]	C	G	2.143e^-4	0.762	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
X	4364280	X_4364280_SNP [dm3] X_4470247_SNP [dm6]	T	G	2.148e^-4	0.762	INTRON bi & 1 other
3L	17410372	3L_17410372_SNP [dm3] 3L_17417272_SNP [dm6]	C	A	2.152e^-4	0.762	INTRON blot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7580716	3L_7580716_SNP [dm3] 3L_7587616_SNP [dm6]	C	T	2.153e^-4	0.762	DOWNSTREAM CG14838 & 1 other INTERGENIC
2L	14470633	2L_14470633_SNP [dm3] 2L_14470633_SNP [dm6]	T	C	2.162e^-4	0.762	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1488140	3L_1488140_SNP [dm3] 3L_1488140_SNP [dm6]	C	T	2.163e^-4	0.762	SYNONYMOUS_CODING stet UPSTREAM CR43701 & 1 other	TF binding site mE1_TFBS_cad
3L	8279972	3L_8279972_SNP [dm3] 3L_8286872_SNP [dm6]	T	A	2.164e^-4	0.762	UPSTREAM cert INTRON cert
3R	10970431	3R_10970431_SNP [dm3] 3R_15144709_SNP [dm6]	C	T	2.171e^-4	0.762	SYNONYMOUS_CODING GlyS	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	23767552	3L_23767552_SNP [dm3] 3L_23774452_SNP [dm6]	G	A	2.172e^-4	0.762	INTERGENIC
2R	18518177	2R_18518177_SNP [dm3] 2R_22630672_SNP [dm6]	T	A	2.186e^-4	0.762	INTRON CG33143	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9257761	2R_9257761_SNP [dm3] 2R_13370256_SNP [dm6]	G	A	2.190e^-4	0.762	INTERGENIC
3L	913708	3L_913708_SNP [dm3] 3L_913708_SNP [dm6]	T	A	2.191e^-4	0.762	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	801096	2R_801096_SNP [dm3] 2R_4913591_SNP [dm6]	C	G	2.192e^-4	0.762	INTERGENIC	transposable element FlyBase
2R	11845576	2R_11845576_SNP [dm3] 2R_15958071_SNP [dm6]	G	T	2.192e^-4	0.762	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8214222	3L_8214222_SNP [dm3] 3L_8221122_SNP [dm6]	T	C	2.194e^-4	0.762	INTERGENIC
2R	18396103	2R_18396103_SNP [dm3] 2R_22508598_SNP [dm6]	A	G	2.195e^-4	0.762	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9164473	2L_9164473_SNP [dm3] 2L_9164473_SNP [dm6]	T	C	2.208e^-4	0.762	SYNONYMOUS_CODING CG13108 DOWNSTREAM CG32982 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9265895	2R_9265895_SNP [dm3] 2R_13378390_SNP [dm6]	C	T	2.209e^-4	0.762	UPSTREAM CG10814 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1667420	X_1667420_SNP [dm3] X_1773387_SNP [dm6]	G	A	2.222e^-4	0.762	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	5699878	2R_5699878_SNP [dm3] 2R_9812373_SNP [dm6]	T	A	2.224e^-4	0.762	INTRON CG1648
3L	13291444	3L_13291444_SNP [dm3] 3L_13298344_SNP [dm6]	C	G	2.225e^-4	0.762	UPSTREAM CR45255 DOWNSTREAM CR45253 & 1 other EXON CR45254	TF binding site BDTNP1_TFBS_prd
2L	16389839	2L_16389839_SNP [dm3] 2L_16389839_SNP [dm6]	T	C	2.225e^-4	0.762	INTERGENIC
2L	12108707	2L_12108707_SNP [dm3] 2L_12108707_SNP [dm6]	G	T	2.225e^-4	0.762	SYNONYMOUS_CODING Rab6 UPSTREAM Phae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12154628	2L_12154628_SNP [dm3] 2L_12154628_SNP [dm6]	C	T	2.231e^-4	0.762	INTRON CG31760
2R	13130681	2R_13130681_SNP [dm3] 2R_17243176_SNP [dm6]	A	G	2.231e^-4	0.762	INTRON mbl
2R	13130694	2R_13130694_SNP [dm3] 2R_17243189_SNP [dm6]	G	A	2.231e^-4	0.762	INTRON mbl
2L	10592611	2L_10592611_SNP [dm3] 2L_10592611_SNP [dm6]	A	T	2.239e^-4	0.762	INTRON Trim9
3L	1828139	3L_1828139_SNP [dm3] 3L_1828139_SNP [dm6]	A	G	2.246e^-4	0.762	INTRON Cpr62Ba
X	17573881	X_17573881_SNP [dm3] X_17679848_SNP [dm6]	A	G	2.251e^-4	0.762	INTRON chas
2R	16271183	2R_16271183_SNP [dm3] 2R_20383678_SNP [dm6]	A	C	2.255e^-4	0.762	INTERGENIC
2R	9066477	2R_9066477_SNP [dm3] 2R_13178972_SNP [dm6]	T	G	2.265e^-4	0.762	SYNONYMOUS_CODING CG17724 UTR_3_PRIME seq & 1 other DOWNSTREAM seq	TF binding site mE1_TFBS_cad
2L	9547524	2L_9547524_SNP [dm3] 2L_9547524_SNP [dm6]	A	C	2.266e^-4	0.762	DOWNSTREAM jp & 1 other INTERGENIC
3R	21778570	3R_21778570_SNP [dm3] 3R_25952848_SNP [dm6]	T	C	2.266e^-4	0.762	INTRON CCAP-R	TF binding site mE1_TFBS_HSA
3R	25065444	3R_25065444_SNP [dm3] 3R_29239722_SNP [dm6]	T	C	2.271e^-4	0.762	SYNONYMOUS_CODING CG31427 DOWNSTREAM CG31445
3R	8682999	3R_8682999_SNP [dm3] 3R_12857277_SNP [dm6]	A	C	2.274e^-4	0.762	INTRON CG10126
2R	15853317	2R_15853317_SNP [dm3] 2R_19965812_SNP [dm6]	G	A	2.275e^-4	0.762	INTERGENIC
2R	17925536	2R_17925536_SNP [dm3] 2R_22038031_SNP [dm6]	T	C	2.276e^-4	0.762	INTRON CG34370
3R	10971461	3R_10971461_SNP [dm3] 3R_15145739_SNP [dm6]	C	A	2.282e^-4	0.762	UPSTREAM GlyS INTRON GlyS	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7397099	3L_7397099_SNP [dm3] 3L_7403999_SNP [dm6]	C	A	2.286e^-4	0.762	UTR_5_PRIME CG8560 UPSTREAM CG8560
3L	19188323	3L_19188323_SNP [dm3] 3L_19195223_SNP [dm6]	G	T	2.288e^-4	0.762	INTRON fz2
X	1667711	X_1667711_SNP [dm3] X_1773678_SNP [dm6]	C	T	2.312e^-4	0.767	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	16271740	2R_16271740_SNP [dm3] 2R_20384235_SNP [dm6]	G	C	2.317e^-4	0.767	INTERGENIC
3L	2765413	3L_2765413_SNP [dm3] 3L_2765413_SNP [dm6]	G	A	2.321e^-4	0.767	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7518324	2L_7518324_SNP [dm3] 2L_7518324_SNP [dm6]	C	T	2.322e^-4	0.767	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8671961	3R_8671961_SNP [dm3] 3R_12846239_SNP [dm6]	T	C	2.324e^-4	0.767	INTRON beat-Va
3R	8670834	3R_8670834_SNP [dm3] 3R_12845112_SNP [dm6]	A	G	2.341e^-4	0.769	INTRON beat-Va
3R	8679424	3R_8679424_SNP [dm3] 3R_12853702_SNP [dm6]	C	T	2.342e^-4	0.769	INTERGENIC
3L	8701631	3L_8701631_SNP [dm3] 3L_8708531_SNP [dm6]	G	A	2.345e^-4	0.769	INTERGENIC	regulatory region REDfly_CRMs
X	20950417	X_20950417_DEL [dm3] X_21079390_DEL [dm6]	TGTT	T	2.351e^-4	0.769	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23242934	3R_23242934_SNP [dm3] 3R_27417212_SNP [dm6]	A	G	2.356e^-4	0.769	INTRON side
2L	16389542	2L_16389542_SNP [dm3] 2L_16389542_SNP [dm6]	T	C	2.357e^-4	0.769	INTERGENIC
2L	1248198	2L_1248198_SNP [dm3] 2L_1248198_SNP [dm6]	C	T	2.358e^-4	0.769	INTERGENIC
2R	7566259	2R_7566259_SNP [dm3] 2R_11678754_SNP [dm6]	T	A	2.384e^-4	0.77	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	9255396	2R_9255396_SNP [dm3] 2R_13367891_SNP [dm6]	C	T	2.387e^-4	0.77	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8547744	2R_8547744_SNP [dm3] 2R_12660239_SNP [dm6]	A	T	2.389e^-4	0.77	UTR_3_PRIME nemy DOWNSTREAM CG8646
3R	8640685	3R_8640685_SNP [dm3] 3R_12814963_SNP [dm6]	C	T	2.398e^-4	0.77	INTRON CG31345
2R	17446955	2R_17446955_SNP [dm3] 2R_21559450_SNP [dm6]	A	G	2.408e^-4	0.77	UTR_3_PRIME Egfr DOWNSTREAM CG10440	TF binding site mE1_TFBS_sens
3R	16890334	3R_16890334_SNP [dm3] 3R_21064612_SNP [dm6]	A	G	2.412e^-4	0.77	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1941200	2L_1941200_SNP [dm3] 2L_1941200_SNP [dm6]	C	A	2.413e^-4	0.77	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8643549	3R_8643549_SNP [dm3] 3R_12817827_SNP [dm6]	G	A	2.413e^-4	0.77	UPSTREAM CG31345 INTERGENIC
3L	10594631	3L_10594631_SNP [dm3] 3L_10601531_SNP [dm6]	T	G	2.421e^-4	0.77	INTERGENIC
2R	15097045	2R_15097045_SNP [dm3] 2R_19209540_SNP [dm6]	G	C	2.427e^-4	0.77	INTRON hppy
X	4062828	X_4062828_SNP [dm3] X_4168795_SNP [dm6]	A	C	2.434e^-4	0.77	INTRON Fas2
2R	5408346	2R_5408346_SNP [dm3] 2R_9520841_SNP [dm6]	T	C	2.434e^-4	0.77	INTRON brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7986345	2L_7986345_SNP [dm3] 2L_7986345_SNP [dm6]	A	C	2.435e^-4	0.77	NON_SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
2R	19134470	2R_19134470_SNP [dm3] 2R_23246947_SNP [dm6]	C	T	2.438e^-4	0.77	SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5196387	2R_5196387_SNP [dm3] 2R_9308882_SNP [dm6]	A	T	2.439e^-4	0.77	UPSTREAM Myd88 DOWNSTREAM CG13739 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	8667610	3R_8667610_SNP [dm3] 3R_12841888_SNP [dm6]	A	T	2.445e^-4	0.77	UTR_3_PRIME beat-Va
2R	12708432	2R_12708432_SNP [dm3] 2R_16820927_SNP [dm6]	C	T	2.450e^-4	0.77	INTERGENIC
3L	13291459	3L_13291459_SNP [dm3] 3L_13298359_SNP [dm6]	C	G	2.450e^-4	0.77	UPSTREAM CR45255 DOWNSTREAM CR45253 & 1 other EXON CR45254	TF binding site BDTNP1_TFBS_prd
2R	7866429	2R_7866429_SNP [dm3] 2R_11978924_SNP [dm6]	A	C	2.454e^-4	0.77	NON_SYNONYMOUS_CODING CG30036 DOWNSTREAM CG30037	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9262304	2L_9262304_SNP [dm3] 2L_9262304_SNP [dm6]	C	A	2.456e^-4	0.77	SPLICE_SITE_DONOR CR45262 INTRON Ggamma30A & 1 other
3L	20061015	3L_20061015_SNP [dm3] 3L_20067915_SNP [dm6]	T	C	2.459e^-4	0.77	INTRON sNPF-R
X	16355033	X_16355033_SNP [dm3] X_16461000_SNP [dm6]	T	A	2.459e^-4	0.77	UTR_3_PRIME para
3R	19413408	3R_19413408_SNP [dm3] 3R_23587686_SNP [dm6]	G	C	2.461e^-4	0.77	SYNONYMOUS_CODING CG10182
3R	23222903	3R_23222903_SNP [dm3] 3R_27397181_SNP [dm6]	C	A	2.461e^-4	0.77	INTRON side
2L	17996511	2L_17996511_SNP [dm3] 2L_17996511_SNP [dm6]	G	A	2.466e^-4	0.77	INTERGENIC
2L	1941194	2L_1941194_SNP [dm3] 2L_1941194_SNP [dm6]	G	A	2.469e^-4	0.77	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25487404	3R_25487404_SNP [dm3] 3R_29661682_SNP [dm6]	G	A	2.471e^-4	0.77	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9255405	2R_9255405_SNP [dm3] 2R_13367900_SNP [dm6]	T	A	2.483e^-4	0.771	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9276058	3R_9276058_SNP [dm3] 3R_13450336_SNP [dm6]	G	A	2.487e^-4	0.771	UPSTREAM CG14372 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	6323772	2L_6323772_SNP [dm3] 2L_6323772_SNP [dm6]	T	C	2.496e^-4	0.771	UTR_5_PRIME PDZ-GEF DOWNSTREAM Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	7175656	2L_7175656_SNP [dm3] 2L_7175656_SNP [dm6]	T	C	2.497e^-4	0.771	UPSTREAM CR44610 INTERGENIC
3L	8553204	3L_8553204_SNP [dm3] 3L_8560104_SNP [dm6]	G	A	2.509e^-4	0.771	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5694440	2R_5694440_SNP [dm3] 2R_9806935_SNP [dm6]	G	A	2.515e^-4	0.771	UPSTREAM CG1688 INTERGENIC
2L	14285817	2L_14285817_SNP [dm3] 2L_14285817_SNP [dm6]	T	C	2.517e^-4	0.771	INTRON wb
3R	22982310	3R_22982310_SNP [dm3] 3R_27156588_SNP [dm6]	A	G	2.519e^-4	0.771	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	8676048	3R_8676048_SNP [dm3] 3R_12850326_SNP [dm6]	C	G	2.520e^-4	0.771	UPSTREAM CR45587 DOWNSTREAM CR44234 INTERGENIC
2L	18035581	2L_18035581_SNP [dm3] 2L_18035581_SNP [dm6]	T	C	2.525e^-4	0.771	INTRON rdo
3L	7279329	3L_7279329_SNP [dm3] 3L_7286229_SNP [dm6]	A	G	2.529e^-4	0.771	INTRON unc-13-4A
2L	16384381	2L_16384381_SNP [dm3] 2L_16384381_SNP [dm6]	G	A	2.532e^-4	0.771	INTERGENIC
3R	15104408	3R_15104408_SNP [dm3] 3R_19278686_SNP [dm6]	T	C	2.532e^-4	0.771	DOWNSTREAM CR44173 INTERGENIC
3R	13293022	3R_13293022_SNP [dm3] 3R_17467300_SNP [dm6]	A	G	2.539e^-4	0.771	INTERGENIC
3R	8667555	3R_8667555_SNP [dm3] 3R_12841833_SNP [dm6]	A	C	2.539e^-4	0.771	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
2L	7635318	2L_7635318_SNP [dm3] 2L_7635318_SNP [dm6]	A	G	2.542e^-4	0.771	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
X	8753690	X_8753690_SNP [dm3] X_8859657_SNP [dm6]	G	C	2.547e^-4	0.772	INTRON CG12075
3R	8643863	3R_8643863_SNP [dm3] 3R_12818141_SNP [dm6]	G	C	2.553e^-4	0.772	INTERGENIC
3L	15294311	3L_15294311_SNP [dm3] 3L_15301211_SNP [dm6]	T	G	2.566e^-4	0.773	NON_SYNONYMOUS_CODING Best3 DOWNSTREAM Best4
X	1666887	X_1666887_SNP [dm3] X_1772854_SNP [dm6]	G	T	2.567e^-4	0.773	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7733166	2R_7733166_SNP [dm3] 2R_11845661_SNP [dm6]	A	G	2.571e^-4	0.773	UTR_5_PRIME Sln UPSTREAM CR44304 DOWNSTREAM CG43190	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19137116	2R_19137116_SNP [dm3] 2R_23249593_SNP [dm6]	T	A	2.573e^-4	0.773	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12256726	2L_12256726_SNP [dm3] 2L_12256726_SNP [dm6]	G	A	2.577e^-4	0.773	INTRON aret
3R	8684424	3R_8684424_SNP [dm3] 3R_12858702_SNP [dm6]	A	G	2.586e^-4	0.773	INTRON CG10126
2L	2378353	2L_2378353_SNP [dm3] 2L_2378353_SNP [dm6]	T	C	2.588e^-4	0.773	SYNONYMOUS_CODING Atxn7	TF binding site mE1_TFBS_chinmo
3L	18596469	3L_18596469_SNP [dm3] 3L_18603369_SNP [dm6]	C	T	2.590e^-4	0.773	UPSTREAM CG18234 INTRON CG4174 & 1 other
2R	18561405	2R_18561405_SNP [dm3] 2R_22673900_SNP [dm6]	T	A	2.609e^-4	0.774	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC
2R	18561448	2R_18561448_SNP [dm3] 2R_22673943_SNP [dm6]	T	A	2.609e^-4	0.774	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC	TF binding site mE1_TFBS_sens
2L	1459347	2L_1459347_SNP [dm3] 2L_1459347_SNP [dm6]	A	G	2.613e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4144320	3L_4144320_SNP [dm3] 3L_4144320_SNP [dm6]	C	T	2.622e^-4	0.774	INTRON CG32260
3R	22982364	3R_22982364_SNP [dm3] 3R_27156642_SNP [dm6]	A	T	2.627e^-4	0.774	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	20990665	3R_20990665_SNP [dm3] 3R_25164943_SNP [dm6]	T	G	2.631e^-4	0.774	INTERGENIC
2L	18224139	2L_18224139_SNP [dm3] 2L_18224139_SNP [dm6]	A	T	2.634e^-4	0.774	INTRON CG42750
2L	13828872	2L_13828872_SNP [dm3] 2L_13828872_SNP [dm6]	G	A	2.644e^-4	0.774	SYNONYMOUS_CODING Arpc1 UPSTREAM Orc5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13419231	3L_13419231_SNP [dm3] 3L_13426131_SNP [dm6]	G	A	2.645e^-4	0.774	SYNONYMOUS_CODING CG14105 UPSTREAM CG14106
2L	15872143	2L_15872143_SNP [dm3] 2L_15872143_SNP [dm6]	G	A	2.650e^-4	0.774	INTERGENIC
2R	9254407	2R_9254407_INS [dm3] 2R_13366902_INS [dm6]	T	TTT	2.659e^-4	0.774	INTERGENIC
3L	13336658	3L_13336658_SNP [dm3] 3L_13343558_SNP [dm6]	C	A	2.663e^-4	0.774	EXON CR44559
X	2751461	X_2751461_SNP [dm3] X_2857428_SNP [dm6]	G	T	2.665e^-4	0.774	INTRON kirre
3L	913713	3L_913713_SNP [dm3] 3L_913713_SNP [dm6]	A	T	2.675e^-4	0.774	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17927532	2R_17927532_SNP [dm3] 2R_22040027_SNP [dm6]	G	A	2.676e^-4	0.774	UPSTREAM CG34370 INTERGENIC
3R	14207821	3R_14207821_SNP [dm3] 3R_18382099_SNP [dm6]	T	C	2.679e^-4	0.774	SYNONYMOUS_CODING CG14309 UPSTREAM CG7675	TF binding site mE1_TFBS_cad
3R	10408447	3R_10408447_SNP [dm3] 3R_14582725_SNP [dm6]	C	T	2.680e^-4	0.774	INTRON stumps
2R	12186584	2R_12186584_SNP [dm3] 2R_16299079_SNP [dm6]	T	C	2.682e^-4	0.774	UPSTREAM CG43265 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8643861	3R_8643861_SNP [dm3] 3R_12818139_SNP [dm6]	G	A	2.693e^-4	0.774	INTERGENIC
2R	19363710	2R_19363710_SNP [dm3] 2R_23476187_SNP [dm6]	G	T	2.697e^-4	0.774	UPSTREAM CR43792 DOWNSTREAM CR43793 INTRON CG43795 & 1 other
2R	4957426	2R_4957426_SNP [dm3] 2R_9069921_SNP [dm6]	A	T	2.703e^-4	0.774	INTRON ana	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	8356660	X_8356660_SNP [dm3] X_8462627_SNP [dm6]	T	C	2.707e^-4	0.774	SYNONYMOUS_CODING Es2 DOWNSTREAM Sptr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10533643	3R_10533643_SNP [dm3] 3R_14707921_SNP [dm6]	G	A	2.717e^-4	0.774	INTRON kibra
3L	3308347	3L_3308347_SNP [dm3] 3L_3308347_SNP [dm6]	G	T	2.718e^-4	0.774	INTRON ZnT63C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12117329	2L_12117329_SNP [dm3] 2L_12117329_SNP [dm6]	G	C	2.731e^-4	0.774	INTRON CG17211
2R	2142304	2R_2142304_SNP [dm3] 2R_6254799_SNP [dm6]	A	G	2.734e^-4	0.774	INTRON Pld	transposable element FlyBase
2L	5517571	2L_5517571_SNP [dm3] 2L_5517571_SNP [dm6]	T	G	2.743e^-4	0.774	UPSTREAM CG14020 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	20224011	2R_20224011_SNP [dm3] 2R_24336488_SNP [dm6]	T	C	2.752e^-4	0.774	UPSTREAM CR44282 INTERGENIC
X	17573852	X_17573852_SNP [dm3] X_17679819_SNP [dm6]	G	C	2.759e^-4	0.774	INTRON chas
2L	13823447	2L_13823447_SNP [dm3] 2L_13823447_SNP [dm6]	T	C	2.759e^-4	0.774	SYNONYMOUS_CODING b DOWNSTREAM tam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22982330	3R_22982330_SNP [dm3] 3R_27156608_SNP [dm6]	G	A	2.763e^-4	0.774	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	22982344	3R_22982344_SNP [dm3] 3R_27156622_SNP [dm6]	A	T	2.763e^-4	0.774	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3R	25487277	3R_25487277_SNP [dm3] 3R_29661555_SNP [dm6]	A	C	2.768e^-4	0.774	INTERGENIC
X	19512486	X_19512486_SNP [dm3] X_19618453_SNP [dm6]	G	A	2.772e^-4	0.774	UTR_5_PRIME CG12788 & 1 other DOWNSTREAM CG14221	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3347199	2L_3347199_SNP [dm3] 2L_3347199_SNP [dm6]	T	A	2.775e^-4	0.774	INTRON E23
X	1666798	X_1666798_SNP [dm3] X_1772765_SNP [dm6]	C	A	2.783e^-4	0.774	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	15492946	3L_15492946_SNP [dm3] 3L_15499846_SNP [dm6]	G	C	2.795e^-4	0.774	SYNONYMOUS_CODING CG7275	TF binding site mE1_TFBS_sens
3R	18525995	3R_18525995_SNP [dm3] 3R_22700273_SNP [dm6]	T	C	2.798e^-4	0.774	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
3R	27139172	3R_27139172_SNP [dm3] 3R_31313450_SNP [dm6]	A	G	2.806e^-4	0.774	INTRON CG34347	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1941203	2L_1941203_SNP [dm3] 2L_1941203_SNP [dm6]	T	C	2.809e^-4	0.774	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13956214	3R_13956214_SNP [dm3] 3R_18130492_SNP [dm6]	C	T	2.812e^-4	0.774	SYNONYMOUS_CODING sr	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	1668733	X_1668733_SNP [dm3] X_1774700_SNP [dm6]	A	C	2.819e^-4	0.774	UTR_5_PRIME Adar INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	9660819	2R_9660819_SNP [dm3] 2R_13773314_SNP [dm6]	G	A	2.828e^-4	0.774	INTRON Cpr50Ca	TF binding site mE1_TFBS_inv
X	20950463	X_20950463_SNP [dm3] X_21079436_SNP [dm6]	A	G	2.828e^-4	0.774	DOWNSTREAM bves INTRON bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7889791	2R_7889791_SNP [dm3] 2R_12002286_SNP [dm6]	A	C	2.828e^-4	0.774	SYNONYMOUS_CODING otk INTRON otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10969863	3R_10969863_SNP [dm3] 3R_15144141_SNP [dm6]	T	C	2.830e^-4	0.774	INTRON GlyS	TF binding site mE1_TFBS_cad
3L	4155893	3L_4155893_SNP [dm3] 3L_4155893_SNP [dm6]	C	G	2.833e^-4	0.774	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9092040	X_9092040_SNP [dm3] X_9198007_SNP [dm6]	C	T	2.839e^-4	0.774	SYNONYMOUS_CODING su_r_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	913704	3L_913704_SNP [dm3] 3L_913704_SNP [dm6]	C	T	2.840e^-4	0.774	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10934478	3L_10934478_SNP [dm3] 3L_10941378_SNP [dm6]	T	C	2.843e^-4	0.774	INTERGENIC
X	18273325	X_18273325_SNP [dm3] X_18379292_SNP [dm6]	T	G	2.846e^-4	0.774	SYNONYMOUS_CODING por UPSTREAM CG6179	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19629373	2L_19629373_SNP [dm3] 2L_19629373_SNP [dm6]	T	A	2.854e^-4	0.774	INTRON Lar
2L	4852260	2L_4852260_SNP [dm3] 2L_4852260_SNP [dm6]	T	C	2.856e^-4	0.774	SYNONYMOUS_CODING Mon1 UPSTREAM pog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2L	7270679	2L_7270679_SNP [dm3] 2L_7270679_SNP [dm6]	T	C	2.859e^-4	0.774	INTRON Wnt4
3R	24725873	3R_24725873_DEL [dm3] 3R_28900151_DEL [dm6]	AGCTT	G	2.862e^-4	0.774	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18866809	X_18866809_INS [dm3] X_18972776_INS [dm6]	T	TT	2.862e^-4	0.774	INTRON CG43759
2L	3348629	2L_3348629_SNP [dm3] 2L_3348629_SNP [dm6]	T	C	2.870e^-4	0.774	INTRON E23
2R	10248313	2R_10248313_SNP [dm3] 2R_14360808_SNP [dm6]	C	T	2.871e^-4	0.774	UPSTREAM Arc1 EXON CR10102	TF binding site mE1_TFBS_chinmo
3L	8062119	3L_8062119_SNP [dm3] 3L_8069019_SNP [dm6]	C	G	2.872e^-4	0.774	SYNONYMOUS_CODING CG42590 UPSTREAM tRNA:CR32363 DOWNSTREAM CG42591 INTRON Ect4
2R	19137508	2R_19137508_SNP [dm3] 2R_23249985_SNP [dm6]	C	A	2.879e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15638449	3L_15638449_SNP [dm3] 3L_15645349_SNP [dm6]	C	A	2.881e^-4	0.774	INTRON comm3
2R	12161639	2R_12161639_SNP [dm3] 2R_16274134_SNP [dm6]	A	C	2.884e^-4	0.774	NON_SYNONYMOUS_CODING CG33017
X	14505883	X_14505883_SNP [dm3] X_14611850_SNP [dm6]	T	C	2.892e^-4	0.774	INTRON NetA
3R	10971492	3R_10971492_SNP [dm3] 3R_15145770_SNP [dm6]	A	G	2.893e^-4	0.774	UPSTREAM GlyS INTRON GlyS	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	19281972	2L_19281972_SNP [dm3] 2L_19281972_SNP [dm6]	T	C	2.895e^-4	0.774	INTERGENIC
3R	18896443	3R_18896443_DEL [dm3] 3R_23070721_DEL [dm6]	ATAATATTTGTGAGTGGA...	A	2.895e^-4	0.774	UTR_3_PRIME CG13830
2R	19366724	2R_19366724_SNP [dm3] 2R_23479201_SNP [dm6]	C	T	2.898e^-4	0.774	INTRON CG43795
2R	19366725	2R_19366725_SNP [dm3] 2R_23479202_SNP [dm6]	T	C	2.898e^-4	0.774	INTRON CG43795
2L	1253068	2L_1253068_SNP [dm3] 2L_1253068_SNP [dm6]	G	T	2.905e^-4	0.774	INTERGENIC
X	1668812	X_1668812_SNP [dm3] X_1774779_SNP [dm6]	T	A	2.910e^-4	0.774	UTR_5_PRIME Adar INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12117700	2L_12117700_SNP [dm3] 2L_12117700_SNP [dm6]	T	G	2.914e^-4	0.774	INTRON CG17211
2R	7566245	2R_7566245_SNP [dm3] 2R_11678740_SNP [dm6]	A	C	2.917e^-4	0.774	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	9733090	3R_9733090_INS [dm3] 3R_13907368_INS [dm6]	C	CGGCGGCCTCATC...	2.917e^-4	0.774	INTERGENIC
2R	9262104	2R_9262104_SNP [dm3] 2R_13374599_SNP [dm6]	A	C	2.928e^-4	0.774	INTERGENIC
3L	11108332	3L_11108332_SNP [dm3] 3L_11115232_SNP [dm6]	C	T	2.928e^-4	0.774	SYNONYMOUS_CODING fd68A
3L	19644224	3L_19644224_SNP [dm3] 3L_19651124_SNP [dm6]	A	G	2.933e^-4	0.774	SYNONYMOUS_CODING tey UTR_3_PRIME tey	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3427821	3L_3427821_SNP [dm3] 3L_3427821_SNP [dm6]	G	A	2.935e^-4	0.774	DOWNSTREAM eIF5B INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17250702	2L_17250702_SNP [dm3] 2L_17250702_SNP [dm6]	A	T	2.942e^-4	0.774	INTRON beat-IIIc	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	5940807	2R_5940807_SNP [dm3] 2R_10053302_SNP [dm6]	A	C	2.946e^-4	0.774	UPSTREAM CR44297 DOWNSTREAM Def INTRON magu EXON CR44298
3L	15491956	3L_15491956_SNP [dm3] 3L_15498856_SNP [dm6]	A	T	2.953e^-4	0.774	UPSTREAM CG7275 DOWNSTREAM CG13455 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8625646	3R_8625646_SNP [dm3] 3R_12799924_SNP [dm6]	G	T	2.954e^-4	0.774	INTERGENIC
2L	19281987	2L_19281987_SNP [dm3] 2L_19281987_SNP [dm6]	G	A	2.957e^-4	0.774	INTERGENIC
3L	7421976	3L_7421976_SNP [dm3] 3L_7428876_SNP [dm6]	G	T	2.959e^-4	0.774	INTRON CG42458
3R	14804899	3R_14804899_SNP [dm3] 3R_18979177_SNP [dm6]	C	T	2.959e^-4	0.774	UPSTREAM CG12269 INTRON Smu1	TF binding site mE1_TFBS_sens
2R	9262105	2R_9262105_SNP [dm3] 2R_13374600_SNP [dm6]	A	C	2.961e^-4	0.774	INTERGENIC
3L	17393965	3L_17393965_INS [dm3] 3L_17400865_INS [dm6]	T	TT	2.961e^-4	0.774	UTR_3_PRIME noe INTRON blot
3R	18525998	3R_18525998_SNP [dm3] 3R_22700276_SNP [dm6]	A	T	2.961e^-4	0.774	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
X	6494185	X_6494185_SNP [dm3] X_6600152_SNP [dm6]	C	A	2.962e^-4	0.774	UTR_5_PRIME pigs DOWNSTREAM APC7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	25414136	3R_25414136_INS [dm3] 3R_29588414_INS [dm6]	G	AGACAA	2.962e^-4	0.774	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
3R	14207668	3R_14207668_SNP [dm3] 3R_18381946_SNP [dm6]	A	G	2.963e^-4	0.774	UTR_3_PRIME CG14309 UPSTREAM CG7675	TF binding site mE1_TFBS_cad
2L	9861266	2L_9861266_SNP [dm3] 2L_9861266_SNP [dm6]	C	A	2.966e^-4	0.774	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA
3R	9973437	3R_9973437_SNP [dm3] 3R_14147715_SNP [dm6]	G	A	2.975e^-4	0.774	DOWNSTREAM CG14355 INTERGENIC
2L	13763464	2L_13763464_SNP [dm3] 2L_13763464_SNP [dm6]	T	A	2.979e^-4	0.774	INTRON TM9SF4
3R	22776872	3R_22776872_SNP [dm3] 3R_26951150_SNP [dm6]	T	A	2.979e^-4	0.774	SYNONYMOUS_CODING CG6330	TF binding site mE1_TFBS_cad
2R	17925743	2R_17925743_SNP [dm3] 2R_22038238_SNP [dm6]	A	G	3.003e^-4	0.779	INTRON CG34370
2L	11354676	2L_11354676_SNP [dm3] 2L_11354676_SNP [dm6]	C	T	3.011e^-4	0.779	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2R	6561887	2R_6561887_SNP [dm3] 2R_10674382_SNP [dm6]	G	A	3.015e^-4	0.779	INTRON stan	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2502049	2L_2502049_SNP [dm3] 2L_2502049_SNP [dm6]	G	T	3.029e^-4	0.779	INTERGENIC
3L	9833062	3L_9833062_SNP [dm3] 3L_9839962_SNP [dm6]	C	T	3.030e^-4	0.779	UTR_3_PRIME RasGAP1
3L	7095415	3L_7095415_SNP [dm3] 3L_7102315_SNP [dm6]	G	A	3.043e^-4	0.779	INTRON form3	TF binding site mE1_TFBS_cad
2L	7972330	2L_7972330_SNP [dm3] 2L_7972330_SNP [dm6]	C	T	3.044e^-4	0.779	INTRON Snoo
3L	13565676	3L_13565676_SNP [dm3] 3L_13572576_SNP [dm6]	T	C	3.047e^-4	0.779	INTRON bru-3
2L	1414167	2L_1414167_SNP [dm3] 2L_1414167_SNP [dm6]	C	A	3.047e^-4	0.779	INTRON lea	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	1414177	2L_1414177_SNP [dm3] 2L_1414177_SNP [dm6]	C	T	3.047e^-4	0.779	INTRON lea	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9271791	3R_9271791_SNP [dm3] 3R_13446069_SNP [dm6]	A	G	3.051e^-4	0.779	INTERGENIC
2R	7725005	2R_7725005_SNP [dm3] 2R_11837500_SNP [dm6]	A	G	3.057e^-4	0.779	INTRON Sobp
3R	2880533	3R_2880533_SNP [dm3] 3R_7054811_SNP [dm6]	C	G	3.057e^-4	0.779	NON_SYNONYMOUS_CODING CG1979 DOWNSTREAM Sodh-1
2R	16456582	2R_16456582_SNP [dm3] 2R_20569077_SNP [dm6]	A	G	3.058e^-4	0.779	INTRON qsm
2R	19137172	2R_19137172_SNP [dm3] 2R_23249649_SNP [dm6]	G	A	3.067e^-4	0.78	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22920668	3R_22920668_SNP [dm3] 3R_27094946_SNP [dm6]	C	T	3.071e^-4	0.78	NON_SYNONYMOUS_CODING CG14259 DOWNSTREAM CG14258 & 1 other
3R	15008984	3R_15008984_SNP [dm3] 3R_19183262_SNP [dm6]	G	T	3.085e^-4	0.783	INTRON CG31475
2R	18869641	2R_18869641_SNP [dm3] 2R_22982118_SNP [dm6]	C	T	3.094e^-4	0.783	DOWNSTREAM CG32834 INTERGENIC
3R	18525992	3R_18525992_SNP [dm3] 3R_22700270_SNP [dm6]	C	T	3.097e^-4	0.783	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
3R	22982336	3R_22982336_SNP [dm3] 3R_27156614_SNP [dm6]	A	G	3.097e^-4	0.783	UTR_3_PRIME Men-b DOWNSTREAM Men-b INTRON Men-b
3L	8844413	3L_8844413_SNP [dm3] 3L_8851313_SNP [dm6]	C	T	3.114e^-4	0.786	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	13908009	2L_13908009_SNP [dm3] 2L_13908009_SNP [dm6]	T	C	3.127e^-4	0.787	INTRON Ance	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8395541	3L_8395541_SNP [dm3] 3L_8402441_SNP [dm6]	C	T	3.131e^-4	0.787	UTR_3_PRIME mkg-p & 1 other DOWNSTREAM CG7120
2L	13102068	2L_13102068_SNP [dm3] 2L_13102068_SNP [dm6]	T	C	3.132e^-4	0.787	INTERGENIC
2L	7518330	2L_7518330_SNP [dm3] 2L_7518330_SNP [dm6]	A	C	3.140e^-4	0.788	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25867947	3R_25867947_SNP [dm3] 3R_30042225_SNP [dm6]	C	G	3.146e^-4	0.788	NON_SYNONYMOUS_CODING Sry-alpha	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	18202618	3L_18202618_SNP [dm3] 3L_18209518_SNP [dm6]	C	A	3.150e^-4	0.788	INTERGENIC
X	16691583	X_16691583_SNP [dm3] X_16797550_SNP [dm6]	G	A	3.160e^-4	0.788	UTR_3_PRIME CG9132 DOWNSTREAM CG4768	TF binding site BDTNP1_TFBS_dl
3L	12578024	3L_12578024_SNP [dm3] 3L_12584924_SNP [dm6]	T	A	3.178e^-4	0.788	INTRON ara
X	6720699	X_6720699_SNP [dm3] X_6826666_SNP [dm6]	A	G	3.180e^-4	0.788	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16965449	2R_16965449_SNP [dm3] 2R_21077944_SNP [dm6]	A	G	3.185e^-4	0.788	INTRON Treh
X	1669439	X_1669439_SNP [dm3] X_1775406_SNP [dm6]	A	C	3.189e^-4	0.788	INTRON Adar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14192076	3L_14192076_SNP [dm3] 3L_14198976_SNP [dm6]	A	T	3.189e^-4	0.788	INTRON nuf
2L	6990896	2L_6990896_SNP [dm3] 2L_6990896_SNP [dm6]	G	C	3.193e^-4	0.788	INTRON uif
2L	7270445	2L_7270445_SNP [dm3] 2L_7270445_SNP [dm6]	T	C	3.194e^-4	0.788	INTRON Wnt4
2L	13107425	2L_13107425_SNP [dm3] 2L_13107425_SNP [dm6]	C	T	3.198e^-4	0.788	SYNONYMOUS_CODING CG5142	TF binding site mE1_TFBS_chinmo
3L	14191916	3L_14191916_SNP [dm3] 3L_14198816_SNP [dm6]	A	G	3.205e^-4	0.788	INTRON nuf
2L	5858625	2L_5858625_SNP [dm3] 2L_5858625_SNP [dm6]	G	A	3.207e^-4	0.788	INTERGENIC
2L	1491954	2L_1491954_SNP [dm3] 2L_1491954_SNP [dm6]	A	G	3.208e^-4	0.788	UPSTREAM CG31928 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	17063667	2R_17063667_DEL [dm3] 2R_21176162_DEL [dm6]	CG	C	3.209e^-4	0.788	INTRON Pu
3L	5953092	3L_5953092_SNP [dm3] 3L_5959992_SNP [dm6]	T	C	3.219e^-4	0.788	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9291491	3R_9291491_SNP [dm3] 3R_13465769_SNP [dm6]	A	G	3.224e^-4	0.788	EXON CR17025	TF binding site BDTNP1_TFBS_dl
2L	6321791	2L_6321791_SNP [dm3] 2L_6321791_SNP [dm6]	C	G	3.225e^-4	0.788	SYNONYMOUS_CODING Ddr
3R	8666879	3R_8666879_SNP [dm3] 3R_12841157_SNP [dm6]	T	A	3.226e^-4	0.788	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
3R	23224336	3R_23224336_SNP [dm3] 3R_27398614_SNP [dm6]	A	T	3.226e^-4	0.788	INTRON side
2L	9280278	2L_9280278_SNP [dm3] 2L_9280278_SNP [dm6]	T	C	3.232e^-4	0.788	INTRON Ggamma30A
2R	7566239	2R_7566239_SNP [dm3] 2R_11678734_SNP [dm6]	A	G	3.237e^-4	0.788	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	19165684	2R_19165684_SNP [dm3] 2R_23278161_SNP [dm6]	G	A	3.238e^-4	0.788	INTERGENIC
3R	9973438	3R_9973438_SNP [dm3] 3R_14147716_SNP [dm6]	T	A	3.249e^-4	0.788	DOWNSTREAM CG14355 INTERGENIC
3R	8688580	3R_8688580_SNP [dm3] 3R_12862858_SNP [dm6]	G	T	3.250e^-4	0.788	INTERGENIC
3R	26700427	3R_26700427_SNP [dm3] 3R_30874705_SNP [dm6]	T	A	3.252e^-4	0.788	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
2L	7635333	2L_7635333_SNP [dm3] 2L_7635333_SNP [dm6]	G	A	3.253e^-4	0.788	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	14608697	2R_14608697_SNP [dm3] 2R_18721192_SNP [dm6]	C	A	3.255e^-4	0.788	DOWNSTREAM mir-4982 INTRON Hs3st-A
3R	26808912	3R_26808912_SNP [dm3] 3R_30983190_SNP [dm6]	C	A	3.262e^-4	0.788	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9661764	2R_9661764_SNP [dm3] 2R_13774259_SNP [dm6]	A	T	3.291e^-4	0.794	NON_SYNONYMOUS_CODING Cpr50Ca
3L	13050724	3L_13050724_SNP [dm3] 3L_13057624_SNP [dm6]	A	G	3.299e^-4	0.795	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10212742	3L_10212742_SNP [dm3] 3L_10219642_SNP [dm6]	G	T	3.305e^-4	0.795	NON_SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
2L	7252498	2L_7252498_SNP [dm3] 2L_7252498_SNP [dm6]	C	T	3.306e^-4	0.795	NON_SYNONYMOUS_CODING CG13786
3L	8248583	3L_8248583_SNP [dm3] 3L_8255483_SNP [dm6]	T	G	3.321e^-4	0.797	INTRON Dscam4
3L	18189117	3L_18189117_SNP [dm3] 3L_18196017_SNP [dm6]	C	A	3.333e^-4	0.799	UPSTREAM CR45234 INTERGENIC
3R	8625689	3R_8625689_SNP [dm3] 3R_12799967_SNP [dm6]	C	T	3.335e^-4	0.799	INTERGENIC
2L	14027076	2L_14027076_SNP [dm3] 2L_14027076_SNP [dm6]	C	T	3.346e^-4	0.799	SYNONYMOUS_CODING CG4500	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12850965	3L_12850965_INS [dm3] 3L_12857865_INS [dm6]	C	CC	3.357e^-4	0.799	UTR_3_PRIME CG32107 DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
3L	14192077	3L_14192077_DEL [dm3] 3L_14198977_DEL [dm6]	TATTGC	T	3.360e^-4	0.799	INTRON nuf
3R	23190890	3R_23190890_SNP [dm3] 3R_27365168_SNP [dm6]	G	C	3.362e^-4	0.799	INTRON CG42534
3R	16264406	3R_16264406_SNP [dm3] 3R_20438684_SNP [dm6]	C	T	3.368e^-4	0.799	INTRON Gfrl
3R	22670805	3R_22670805_SNP [dm3] 3R_26845083_SNP [dm6]	C	T	3.370e^-4	0.799	INTRON Lerp
2L	4505183	2L_4505183_SNP [dm3] 2L_4505183_SNP [dm6]	A	T	3.382e^-4	0.799	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10208484	3L_10208484_SNP [dm3] 3L_10215384_SNP [dm6]	G	C	3.385e^-4	0.799	UPSTREAM CG8065 INTERGENIC
3R	8469145	3R_8469145_SNP [dm3] 3R_12643423_SNP [dm6]	G	A	3.390e^-4	0.799	UPSTREAM CG6753 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17809259	3R_17809259_SNP [dm3] 3R_21983537_SNP [dm6]	C	G	3.391e^-4	0.799	INTRON Eip93F
X	20238165	X_20238165_SNP [dm3] X_20367138_SNP [dm6]	A	G	3.391e^-4	0.799	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	17795478	2L_17795478_SNP [dm3] 2L_17795478_SNP [dm6]	A	G	3.395e^-4	0.799	INTRON CadN2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16965447	2R_16965447_SNP [dm3] 2R_21077942_SNP [dm6]	A	G	3.395e^-4	0.799	INTRON Treh
2R	19136484	2R_19136484_SNP [dm3] 2R_23248961_SNP [dm6]	T	A	3.396e^-4	0.799	INTERGENIC
X	19354974	X_19354974_DEL [dm3] X_19460941_DEL [dm6]	TGTATTGTAT	T	3.402e^-4	0.799	INTRON kek5
2L	2342233	2L_2342233_SNP [dm3] 2L_2342233_SNP [dm6]	C	A	3.406e^-4	0.799	INTRON CG9967 & 1 other
2L	11354727	2L_11354727_SNP [dm3] 2L_11354727_SNP [dm6]	A	C	3.422e^-4	0.799	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
2L	17603545	2L_17603545_SNP [dm3] 2L_17603545_SNP [dm6]	G	A	3.422e^-4	0.799	UTR_3_PRIME Sytalpha	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10771508	3R_10771508_SNP [dm3] 3R_14945786_SNP [dm6]	A	G	3.424e^-4	0.799	INTERGENIC
2R	19797174	2R_19797174_SNP [dm3] 2R_23909651_SNP [dm6]	A	G	3.426e^-4	0.799	UPSTREAM CR44806 & 1 other INTRON kcc	TF binding site mE1_TFBS_HSA
3R	8691418	3R_8691418_DEL [dm3] 3R_12865696_DEL [dm6]	AAG	A	3.426e^-4	0.799	INTERGENIC
2L	5694809	2L_5694809_SNP [dm3] 2L_5694809_SNP [dm6]	A	G	3.436e^-4	0.8	INTERGENIC
X	4090416	X_4090416_SNP [dm3] X_4196383_SNP [dm6]	A	G	3.439e^-4	0.8	INTRON Fas2
2L	7707053	2L_7707053_DEL [dm3] 2L_7707053_DEL [dm6]	TTAT	G	3.441e^-4	0.8	INTRON Tep3	TF binding site mE1_TFBS_inv
X	1667424	X_1667424_SNP [dm3] X_1773391_SNP [dm6]	A	G	3.449e^-4	0.8	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
X	20224809	X_20224809_SNP [dm3] X_20353782_SNP [dm6]	A	T	3.457e^-4	0.8	INTERGENIC
2L	9300694	2L_9300694_SNP [dm3] 2L_9300694_SNP [dm6]	A	G	3.460e^-4	0.8	UTR_3_PRIME Ggamma30A
2R	14450704	2R_14450704_SNP [dm3] 2R_18563199_SNP [dm6]	T	C	3.465e^-4	0.8	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3426831	3L_3426831_SNP [dm3] 3L_3426831_SNP [dm6]	T	C	3.476e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23517865	3R_23517865_INS [dm3] 3R_27692143_INS [dm6]	G	GG	3.482e^-4	0.8	UTR_3_PRIME CG12880	TF binding site mE1_TFBS_chinmo
3R	8677890	3R_8677890_SNP [dm3] 3R_12852168_SNP [dm6]	G	A	3.488e^-4	0.8	INTERGENIC
3R	16951193	3R_16951193_SNP [dm3] 3R_21125471_SNP [dm6]	G	A	3.493e^-4	0.8	INTRON slmb	TF binding site BDTNP1_TFBS_dl
X	13381819	X_13381819_SNP [dm3] X_13487786_SNP [dm6]	T	C	3.497e^-4	0.8	INTRON Neto
3L	6708022	3L_6708022_DEL [dm3] 3L_6714922_DEL [dm6]	GT	G	3.497e^-4	0.8	UTR_3_PRIME ple
2R	17513245	2R_17513245_SNP [dm3] 2R_21625740_SNP [dm6]	A	C	3.498e^-4	0.8	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_sens
3R	10970421	3R_10970421_SNP [dm3] 3R_15144699_SNP [dm6]	A	G	3.503e^-4	0.8	SYNONYMOUS_CODING GlyS	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18713584	3R_18713584_SNP [dm3] 3R_22887862_SNP [dm6]	G	T	3.503e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18896463	3R_18896463_SNP [dm3] 3R_23070741_SNP [dm6]	A	C	3.510e^-4	0.8	UTR_3_PRIME CG13830
3R	8578481	3R_8578481_SNP [dm3] 3R_12752759_SNP [dm6]	T	A	3.511e^-4	0.8	INTRON beat-Vc
3R	8667529	3R_8667529_SNP [dm3] 3R_12841807_SNP [dm6]	T	C	3.516e^-4	0.8	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
3R	8578475	3R_8578475_SNP [dm3] 3R_12752753_SNP [dm6]	T	A	3.521e^-4	0.8	INTRON beat-Vc
2L	3348300	2L_3348300_SNP [dm3] 2L_3348300_SNP [dm6]	T	A	3.528e^-4	0.8	INTRON E23
X	20232421	X_20232421_SNP [dm3] X_20361394_SNP [dm6]	T	C	3.533e^-4	0.8	INTERGENIC
3L	2770665	3L_2770665_SNP [dm3] 3L_2770665_SNP [dm6]	G	A	3.537e^-4	0.8	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14496330	2L_14496330_SNP [dm3] 2L_14496330_SNP [dm6]	G	A	3.541e^-4	0.8	DOWNSTREAM tRNA:P:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	14191964	3L_14191964_SNP [dm3] 3L_14198864_SNP [dm6]	A	C	3.549e^-4	0.8	INTRON nuf
2L	7658943	2L_7658943_INS [dm3] 2L_7658943_INS [dm6]	T	TAAAATT	3.555e^-4	0.8	INTRON Slob
3R	8651177	3R_8651177_SNP [dm3] 3R_12825455_SNP [dm6]	G	C	3.561e^-4	0.8	INTERGENIC
2L	18242781	2L_18242781_SNP [dm3] 2L_18242781_SNP [dm6]	C	A	3.562e^-4	0.8	INTRON CG42750
X	9557736	X_9557736_DEL [dm3] X_9663703_DEL [dm6]	AAAAA	G	3.563e^-4	0.8	UPSTREAM CG3106 INTERGENIC
3L	9833071	3L_9833071_SNP [dm3] 3L_9839971_SNP [dm6]	T	A	3.566e^-4	0.8	UTR_3_PRIME RasGAP1
3R	20989000	3R_20989000_SNP [dm3] 3R_25163278_SNP [dm6]	G	A	3.569e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25063484	3R_25063484_SNP [dm3] 3R_29237762_SNP [dm6]	A	C	3.570e^-4	0.8	NON_SYNONYMOUS_CODING CG11951	TF binding site mE1_TFBS_cad
3R	22677748	3R_22677748_SNP [dm3] 3R_26852026_SNP [dm6]	G	A	3.574e^-4	0.8	INTRON Lerp
3R	25414057	3R_25414057_SNP [dm3] 3R_29588335_SNP [dm6]	G	T	3.578e^-4	0.8	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
3L	913659	3L_913659_SNP [dm3] 3L_913659_SNP [dm6]	A	T	3.578e^-4	0.8	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19334307	3L_19334307_SNP [dm3] 3L_19341207_SNP [dm6]	C	A	3.584e^-4	0.8	UTR_3_PRIME CG32206
2L	6024808	2L_6024808_SNP [dm3] 2L_6024808_SNP [dm6]	C	A	3.589e^-4	0.8	UPSTREAM CG9107 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
3L	18199811	3L_18199811_SNP [dm3] 3L_18206711_SNP [dm6]	G	C	3.594e^-4	0.8	INTERGENIC
3L	3580207	3L_3580207_SNP [dm3] 3L_3580207_SNP [dm6]	A	G	3.603e^-4	0.8	INTRON Eip63E
2L	7635071	2L_7635071_SNP [dm3] 2L_7635071_SNP [dm6]	A	C	3.605e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1915632	3L_1915632_SNP [dm3] 3L_1915632_SNP [dm6]	G	C	3.610e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9256886	2R_9256886_SNP [dm3] 2R_13369381_SNP [dm6]	C	T	3.615e^-4	0.8	INTERGENIC
3L	14192086	3L_14192086_SNP [dm3] 3L_14198986_SNP [dm6]	T	A	3.625e^-4	0.8	INTRON nuf
3R	9465999	3R_9465999_SNP [dm3] 3R_13640277_SNP [dm6]	T	C	3.633e^-4	0.8	UTR_3_PRIME sqd INTRON sqd
2L	12187929	2L_12187929_SNP [dm3] 2L_12187929_SNP [dm6]	C	T	3.634e^-4	0.8	INTRON aret
3R	13917897	3R_13917897_SNP [dm3] 3R_18092175_SNP [dm6]	A	C	3.634e^-4	0.8	INTRON sr	TF binding site BDTNP1_TFBS_twi
3R	9313895	3R_9313895_SNP [dm3] 3R_13488173_SNP [dm6]	G	A	3.637e^-4	0.8	INTERGENIC
3L	13943614	3L_13943614_SNP [dm3] 3L_13950514_SNP [dm6]	T	A	3.642e^-4	0.8	INTRON CG32137	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7707046	2L_7707046_SNP [dm3] 2L_7707046_SNP [dm6]	C	G	3.642e^-4	0.8	INTRON Tep3	TF binding site mE1_TFBS_inv
3R	8648306	3R_8648306_SNP [dm3] 3R_12822584_SNP [dm6]	G	C	3.648e^-4	0.8	INTERGENIC
2R	18020292	2R_18020292_SNP [dm3] 2R_22132787_SNP [dm6]	G	C	3.654e^-4	0.8	INTERGENIC
2L	18000914	2L_18000914_INS [dm3] 2L_18000914_INS [dm6]	G	GAACTCAGTTTG...	3.655e^-4	0.8	INTERGENIC
3L	7095284	3L_7095284_SNP [dm3] 3L_7102184_SNP [dm6]	T	A	3.656e^-4	0.8	INTRON form3
3R	8684389	3R_8684389_SNP [dm3] 3R_12858667_SNP [dm6]	T	A	3.663e^-4	0.801	INTRON CG10126
3L	13339109	3L_13339109_SNP [dm3] 3L_13346009_SNP [dm6]	T	C	3.687e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16868754	X_16868754_SNP [dm3] X_16974721_SNP [dm6]	C	T	3.694e^-4	0.801	SYNONYMOUS_CODING CG45002	TF binding site mE1_TFBS_inv
X	21166155	X_21166155_SNP [dm3] X_21295128_SNP [dm6]	G	C	3.694e^-4	0.801	SYNONYMOUS_CODING CG1718
2L	1455939	2L_1455939_SNP [dm3] 2L_1455939_SNP [dm6]	A	G	3.696e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22258496	3R_22258496_SNP [dm3] 3R_26432774_SNP [dm6]	T	C	3.698e^-4	0.801	INTERGENIC
2R	14413981	2R_14413981_SNP [dm3] 2R_18526476_SNP [dm6]	G	A	3.703e^-4	0.801	UPSTREAM CG10924 DOWNSTREAM CG43066 INTERGENIC
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	3.704e^-4	0.801	INTERGENIC
3L	11029173	3L_11029173_DEL [dm3] 3L_11036073_DEL [dm6]	ATACCTA	A	3.710e^-4	0.801	DOWNSTREAM CG43693 & 1 other INTERGENIC
3L	20060100	3L_20060100_SNP [dm3] 3L_20067000_SNP [dm6]	T	A	3.716e^-4	0.801	INTRON sNPF-R
3L	3747218	3L_3747218_SNP [dm3] 3L_3747218_SNP [dm6]	T	G	3.719e^-4	0.801	UPSTREAM CG32264 INTRON CG32264
3L	20061055	3L_20061055_SNP [dm3] 3L_20067955_SNP [dm6]	C	T	3.720e^-4	0.801	INTRON sNPF-R
2L	3282255	2L_3282255_SNP [dm3] 2L_3282255_SNP [dm6]	G	A	3.730e^-4	0.801	INTERGENIC
2R	8505672	2R_8505672_SNP [dm3] 2R_12618167_SNP [dm6]	C	T	3.731e^-4	0.801	INTRON Galphaq & 1 other
2R	16416074	2R_16416074_SNP [dm3] 2R_20528569_SNP [dm6]	A	C	3.732e^-4	0.801	UTR_3_PRIME CG30151
3L	9676337	3L_9676337_SNP [dm3] 3L_9683237_SNP [dm6]	C	T	3.733e^-4	0.801	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad
3L	3510907	3L_3510907_SNP [dm3] 3L_3510907_SNP [dm6]	A	T	3.736e^-4	0.801	DOWNSTREAM ImpE2 & 1 other INTERGENIC
2R	4098981	2R_4098981_SNP [dm3] 2R_8211476_SNP [dm6]	C	A	3.741e^-4	0.801	INTRON LRP1	TF binding site mE1_TFBS_cad
3L	2774303	3L_2774303_SNP [dm3] 3L_2774303_SNP [dm6]	C	A	3.743e^-4	0.801	UPSTREAM Atg2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	2867864	3R_2867864_SNP [dm3] 3R_7042142_SNP [dm6]	A	C	3.748e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17445825	2R_17445825_SNP [dm3] 2R_21558320_SNP [dm6]	T	G	3.764e^-4	0.801	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18661178	3R_18661178_SNP [dm3] 3R_22835456_SNP [dm6]	C	G	3.774e^-4	0.801	INTERGENIC
2L	2378650	2L_2378650_SNP [dm3] 2L_2378650_SNP [dm6]	G	A	3.786e^-4	0.801	SYNONYMOUS_CODING Atxn7	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19138025	2R_19138025_SNP [dm3] 2R_23250502_SNP [dm6]	A	C	3.787e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11029193	3L_11029193_SNP [dm3] 3L_11036093_SNP [dm6]	G	A	3.789e^-4	0.801	DOWNSTREAM CG43693 & 1 other INTERGENIC
3L	10214590	3L_10214590_SNP [dm3] 3L_10221490_SNP [dm6]	A	G	3.794e^-4	0.801	SYNONYMOUS_CODING scramb1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2263001	2L_2263001_SNP [dm3] 2L_2263001_SNP [dm6]	G	A	3.799e^-4	0.801	UPSTREAM CG4270 INTERGENIC
2L	20522401	2L_20522401_SNP [dm3] 2L_20522401_SNP [dm6]	A	T	3.801e^-4	0.801	INTERGENIC
2R	9787416	2R_9787416_SNP [dm3] 2R_13899911_SNP [dm6]	A	G	3.801e^-4	0.801	INTRON shot
3L	10233488	3L_10233488_SNP [dm3] 3L_10240388_SNP [dm6]	T	C	3.801e^-4	0.801	EXON CR45403
2R	7566236	2R_7566236_SNP [dm3] 2R_11678731_SNP [dm6]	G	T	3.804e^-4	0.801	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	4133183	2L_4133183_SNP [dm3] 2L_4133183_SNP [dm6]	T	C	3.804e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3044514	3L_3044514_SNP [dm3] 3L_3044514_SNP [dm6]	G	T	3.806e^-4	0.801	UTR_3_PRIME scramb2 DOWNSTREAM Jafrac2	TF binding site mE1_TFBS_HSA
3R	18526040	3R_18526040_INS [dm3] 3R_22700318_INS [dm6]	T	TGCTT	3.816e^-4	0.801	DOWNSTREAM CCAP & 1 other INTERGENIC
2L	7635346	2L_7635346_SNP [dm3] 2L_7635346_SNP [dm6]	T	C	3.821e^-4	0.801	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2R	18985051	2R_18985051_SNP [dm3] 2R_23097528_SNP [dm6]	C	T	3.827e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	2887553	3R_2887553_SNP [dm3] 3R_7061831_SNP [dm6]	A	G	3.831e^-4	0.801	UTR_3_PRIME djl UPSTREAM CG1988
3R	8642015	3R_8642015_SNP [dm3] 3R_12816293_SNP [dm6]	A	T	3.832e^-4	0.801	INTRON CG31345
2R	18004000	2R_18004000_SNP [dm3] 2R_22116495_SNP [dm6]	G	A	3.833e^-4	0.801	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
X	8337104	X_8337104_SNP [dm3] X_8443071_SNP [dm6]	T	A	3.837e^-4	0.801	UPSTREAM CG12123 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17663849	2R_17663849_SNP [dm3] 2R_21776344_SNP [dm6]	C	A	3.839e^-4	0.801	INTERGENIC
2L	2378325	2L_2378325_SNP [dm3] 2L_2378325_SNP [dm6]	A	T	3.841e^-4	0.801	INTRON Atxn7	TF binding site mE1_TFBS_chinmo
3L	4645287	3L_4645287_SNP [dm3] 3L_4645287_SNP [dm6]	A	T	3.842e^-4	0.801	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11619396	2R_11619396_INS [dm3] 2R_15731891_INS [dm6]	A	AC	3.859e^-4	0.803	INTRON CG30089
X	14780855	X_14780855_SNP [dm3] X_14886822_SNP [dm6]	C	T	3.863e^-4	0.803	SYNONYMOUS_CODING CG9514 INTRON Flo2
2R	15816475	2R_15816475_SNP [dm3] 2R_19928970_SNP [dm6]	G	A	3.869e^-4	0.804	INTERGENIC
3L	15017046	3L_15017046_SNP [dm3] 3L_15023946_SNP [dm6]	A	T	3.874e^-4	0.804	UTR_3_PRIME CG32148 INTRON Sytbeta
2L	11292394	2L_11292394_INS [dm3] 2L_11292394_INS [dm6]	A	AG	3.893e^-4	0.806	INTERGENIC
2R	19135825	2R_19135825_SNP [dm3] 2R_23248302_SNP [dm6]	C	T	3.900e^-4	0.806	UPSTREAM RpL22-like INTERGENIC
3R	22776968	3R_22776968_SNP [dm3] 3R_26951246_SNP [dm6]	A	T	3.900e^-4	0.806	SYNONYMOUS_CODING CG6330	TF binding site mE1_TFBS_cad
2L	18001106	2L_18001106_SNP [dm3] 2L_18001106_SNP [dm6]	A	G	3.901e^-4	0.806	INTERGENIC
3R	13648604	3R_13648604_SNP [dm3] 3R_17822882_SNP [dm6]	A	G	3.905e^-4	0.806	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3982745	3L_3982745_SNP [dm3] 3L_3982745_SNP [dm6]	G	C	3.918e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9658849	2R_9658849_SNP [dm3] 2R_13771344_SNP [dm6]	C	T	3.920e^-4	0.807	INTRON Cpr50Ca
X	18868559	X_18868559_SNP [dm3] X_18974526_SNP [dm6]	C	T	3.928e^-4	0.807	INTRON CG43759	TF binding site mE1_TFBS_inv
2L	13720803	2L_13720803_SNP [dm3] 2L_13720803_SNP [dm6]	G	T	3.934e^-4	0.807	INTERGENIC
3R	25413970	3R_25413970_SNP [dm3] 3R_29588248_SNP [dm6]	A	T	3.945e^-4	0.807	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
2R	17412906	2R_17412906_SNP [dm3] 2R_21525401_SNP [dm6]	C	A	3.948e^-4	0.807	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	23869974	3L_23869974_SNP [dm3] 3L_23876874_SNP [dm6]	A	T	3.952e^-4	0.807	INTRON CG40470
2L	7175667	2L_7175667_SNP [dm3] 2L_7175667_SNP [dm6]	A	T	3.957e^-4	0.807	UPSTREAM CR44610 INTERGENIC
2L	8131196	2L_8131196_SNP [dm3] 2L_8131196_SNP [dm6]	C	T	3.959e^-4	0.807	INTRON CG8668
2L	6705042	2L_6705042_SNP [dm3] 2L_6705042_SNP [dm6]	G	T	3.962e^-4	0.807	INTRON Tsp	TF binding site mE1_TFBS_hkb
3L	14191988	3L_14191988_SNP [dm3] 3L_14198888_SNP [dm6]	A	G	3.967e^-4	0.807	INTRON nuf
2L	3886000	2L_3886000_SNP [dm3] 2L_3886000_SNP [dm6]	G	T	3.967e^-4	0.807	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	4529118	2L_4529118_SNP [dm3] 2L_4529118_SNP [dm6]	A	G	3.975e^-4	0.807	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25413854	3R_25413854_SNP [dm3] 3R_29588132_SNP [dm6]	C	A	3.985e^-4	0.807	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
2R	20050733	2R_20050733_SNP [dm3] 2R_24163210_SNP [dm6]	C	T	3.996e^-4	0.807	INTRON CG3328
3R	8556647	3R_8556647_SNP [dm3] 3R_12730925_SNP [dm6]	C	T	4.001e^-4	0.807	INTERGENIC
2R	11622276	2R_11622276_SNP [dm3] 2R_15734771_SNP [dm6]	T	C	4.003e^-4	0.807	UPSTREAM CG30089 INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	12774655	3L_12774655_INS [dm3] 3L_12781555_INS [dm6]	G	GAGA	4.014e^-4	0.807	UPSTREAM CG10969 INTRON CG17666
3R	12198412	3R_12198412_SNP [dm3] 3R_16372690_SNP [dm6]	C	T	4.018e^-4	0.807	EXON CR45193
2R	20105084	2R_20105084_SNP [dm3] 2R_24217561_SNP [dm6]	C	T	4.019e^-4	0.807	INTRON CG30419
3L	2783560	3L_2783560_SNP [dm3] 3L_2783560_SNP [dm6]	G	A	4.019e^-4	0.807	INTRON pgant6
2L	1248714	2L_1248714_SNP [dm3] 2L_1248714_SNP [dm6]	C	T	4.023e^-4	0.807	INTERGENIC
2L	3158308	2L_3158308_SNP [dm3] 2L_3158308_SNP [dm6]	T	A	4.026e^-4	0.807	INTRON Mad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
3L	2782264	3L_2782264_DEL [dm3] 3L_2782264_DEL [dm6]	AA	A	4.030e^-4	0.807	UTR_5_PRIME pgant6 DOWNSTREAM mRpS35	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18620795	2L_18620795_SNP [dm3] 2L_18620795_SNP [dm6]	A	T	4.034e^-4	0.807	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17260765	X_17260765_SNP [dm3] X_17366732_SNP [dm6]	A	G	4.041e^-4	0.807	INTERGENIC
2R	18278410	2R_18278410_SNP [dm3] 2R_22390905_SNP [dm6]	A	G	4.042e^-4	0.807	INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7727671	2R_7727671_SNP [dm3] 2R_11840166_SNP [dm6]	C	A	4.046e^-4	0.807	UPSTREAM Sobp INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	1862888	2L_1862888_SNP [dm3] 2L_1862888_SNP [dm6]	G	A	4.064e^-4	0.807	INTRON CG31663
3R	9332572	3R_9332572_SNP [dm3] 3R_13506850_SNP [dm6]	G	C	4.065e^-4	0.807	INTERGENIC
3R	17768788	3R_17768788_SNP [dm3] 3R_21943066_SNP [dm6]	A	T	4.067e^-4	0.807	INTERGENIC
3R	9264803	3R_9264803_SNP [dm3] 3R_13439081_SNP [dm6]	C	T	4.073e^-4	0.807	EXON CR42756
2R	11619404	2R_11619404_SNP [dm3] 2R_15731899_SNP [dm6]	A	G	4.075e^-4	0.807	INTRON CG30089
2R	11619406	2R_11619406_MNP [dm3] 2R_15731901_MNP [dm6]	AAA	TTG	4.075e^-4	0.807	INTRON CG30089
3R	24655967	3R_24655967_SNP [dm3] 3R_28830245_SNP [dm6]	A	G	4.076e^-4	0.807	INTRON WASp
2R	13939152	2R_13939152_SNP [dm3] 2R_18051647_SNP [dm6]	A	C	4.078e^-4	0.807	DOWNSTREAM CG10911 INTRON Muc55B
3L	10934476	3L_10934476_SNP [dm3] 3L_10941376_SNP [dm6]	C	T	4.079e^-4	0.807	INTERGENIC
2R	9411206	2R_9411206_SNP [dm3] 2R_13523701_SNP [dm6]	A	C	4.079e^-4	0.807	DOWNSTREAM CG13331 INTRON Vmat
3R	25413988	3R_25413988_SNP [dm3] 3R_29588266_SNP [dm6]	T	A	4.080e^-4	0.807	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
2L	7635339	2L_7635339_SNP [dm3] 2L_7635339_SNP [dm6]	T	G	4.089e^-4	0.807	UPSTREAM CR44799 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3R	22025796	3R_22025796_SNP [dm3] 3R_26200074_SNP [dm6]	C	T	4.090e^-4	0.807	INTRON CR44320	TF binding site BDTNP1_TFBS_twi
3L	913652	3L_913652_SNP [dm3] 3L_913652_SNP [dm6]	A	T	4.091e^-4	0.807	UPSTREAM Glut1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8654988	3R_8654988_SNP [dm3] 3R_12829266_SNP [dm6]	G	A	4.103e^-4	0.808	INTERGENIC
2R	16456548	2R_16456548_SNP [dm3] 2R_20569043_SNP [dm6]	A	G	4.104e^-4	0.808	INTRON qsm
X	5555624	X_5555624_SNP [dm3] X_5661591_SNP [dm6]	G	A	4.112e^-4	0.808	SYNONYMOUS_CODING CG42265	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	3633364	2L_3633364_SNP [dm3] 2L_3633364_SNP [dm6]	C	G	4.124e^-4	0.808	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	3291418	X_3291418_SNP [dm3] X_3397385_SNP [dm6]	C	T	4.130e^-4	0.808	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16415796	2R_16415796_SNP [dm3] 2R_20528291_SNP [dm6]	C	T	4.134e^-4	0.808	DOWNSTREAM CG30151 INTERGENIC	TF binding site mE1_TFBS_inv
3R	900869	3R_900869_SNP [dm3] 3R_5075147_SNP [dm6]	T	C	4.137e^-4	0.808	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3504554	3L_3504554_SNP [dm3] 3L_3504554_SNP [dm6]	C	G	4.147e^-4	0.808	INTRON CG42324
3R	16263930	3R_16263930_SNP [dm3] 3R_20438208_SNP [dm6]	A	G	4.148e^-4	0.808	INTRON Gfrl
2R	17114483	2R_17114483_SNP [dm3] 2R_21226978_SNP [dm6]	C	G	4.152e^-4	0.808	INTRON ASPP
3R	8788314	3R_8788314_SNP [dm3] 3R_12962592_SNP [dm6]	A	G	4.154e^-4	0.808	UPSTREAM grsm INTRON grsm & 1 other
3R	8710555	3R_8710555_SNP [dm3] 3R_12884833_SNP [dm6]	G	A	4.165e^-4	0.808	INTERGENIC
2R	16739883	2R_16739883_SNP [dm3] 2R_20852378_SNP [dm6]	T	A	4.172e^-4	0.808	UPSTREAM CG9993 INTERGENIC	TF binding site mE1_TFBS_cad
3L	2770258	3L_2770258_SNP [dm3] 3L_2770258_SNP [dm6]	A	T	4.174e^-4	0.808	SYNONYMOUS_CODING CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14191985	3L_14191985_SNP [dm3] 3L_14198885_SNP [dm6]	G	C	4.177e^-4	0.808	INTRON nuf
3L	5355681	3L_5355681_DEL [dm3] 3L_5362581_DEL [dm6]	ACCTACTGATGGTAA...	A	4.178e^-4	0.808	UTR_3_PRIME CG4769 DOWNSTREAM Uev1A & 1 other
3L	16894721	3L_16894721_SNP [dm3] 3L_16901621_SNP [dm6]	A	C	4.184e^-4	0.808	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20562956	X_20562956_SNP [dm3] X_20691929_SNP [dm6]	T	C	4.200e^-4	0.808	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
X	3561356	X_3561356_SNP [dm3] X_3667323_SNP [dm6]	C	T	4.204e^-4	0.808	UPSTREAM Ilp7 DOWNSTREAM AstA-R1 INTERGENIC
3L	12002531	3L_12002531_SNP [dm3] 3L_12009431_SNP [dm6]	C	T	4.209e^-4	0.808	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11619399	2R_11619399_MNP [dm3] 2R_15731894_MNP [dm6]	AATA	GCGT	4.213e^-4	0.808	INTRON CG30089
3R	10969695	3R_10969695_SNP [dm3] 3R_15143973_SNP [dm6]	T	G	4.215e^-4	0.808	INTRON GlyS
3L	9905538	3L_9905538_SNP [dm3] 3L_9912438_SNP [dm6]	C	T	4.217e^-4	0.808	INTRON CG34356
3R	23222092	3R_23222092_SNP [dm3] 3R_27396370_SNP [dm6]	C	A	4.219e^-4	0.808	INTRON side
X	2804490	X_2804490_SNP [dm3] X_2910457_SNP [dm6]	T	G	4.228e^-4	0.808	INTRON kirre
2L	13336780	2L_13336780_SNP [dm3] 2L_13336780_SNP [dm6]	T	C	4.235e^-4	0.808	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6450140	2R_6450140_SNP [dm3] 2R_10562635_SNP [dm6]	C	A	4.236e^-4	0.808	INTRON psq	TF binding site BDTNP1_TFBS_twi
3R	25065425	3R_25065425_SNP [dm3] 3R_29239703_SNP [dm6]	T	C	4.240e^-4	0.808	NON_SYNONYMOUS_CODING CG31427 UPSTREAM CG11951 DOWNSTREAM CG31445
3R	15392251	3R_15392251_SNP [dm3] 3R_19566529_SNP [dm6]	T	G	4.242e^-4	0.808	INTRON Dys
2R	14184418	2R_14184418_DEL [dm3] 2R_18296913_DEL [dm6]	TAAATA	CT	4.252e^-4	0.808	UPSTREAM CG18538 & 1 other DOWNSTREAM CG18537 INTRON sbb
2L	2832303	2L_2832303_SNP [dm3] 2L_2832303_SNP [dm6]	G	A	4.252e^-4	0.808	INTERGENIC
X	14074701	X_14074701_SNP [dm3] X_14180668_SNP [dm6]	A	T	4.258e^-4	0.808	UPSTREAM CG11584 INTERGENIC
3L	9960608	3L_9960608_SNP [dm3] 3L_9967508_SNP [dm6]	A	G	4.263e^-4	0.808	SYNONYMOUS_CODING CG6685 UPSTREAM Nc DOWNSTREAM CG34356	TF binding site mE1_TFBS_cad
3R	3222190	3R_3222190_SNP [dm3] 3R_7396468_SNP [dm6]	A	C	4.270e^-4	0.808	INTERGENIC
2L	18253464	2L_18253464_SNP [dm3] 2L_18253464_SNP [dm6]	T	G	4.277e^-4	0.808	DOWNSTREAM CG43406 INTRON CG42750
2L	13580295	2L_13580295_SNP [dm3] 2L_13580295_SNP [dm6]	C	A	4.283e^-4	0.808	INTRON kuz
X	19512647	X_19512647_SNP [dm3] X_19618614_SNP [dm6]	T	G	4.284e^-4	0.808	UPSTREAM Tim9b & 1 other DOWNSTREAM CG14221 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8690215	3R_8690215_SNP [dm3] 3R_12864493_SNP [dm6]	G	A	4.292e^-4	0.808	INTERGENIC
2R	20163755	2R_20163755_SNP [dm3] 2R_24276232_SNP [dm6]	T	A	4.296e^-4	0.808	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9161779	3R_9161779_SNP [dm3] 3R_13336057_SNP [dm6]	G	A	4.298e^-4	0.808	INTERGENIC
2L	7635076	2L_7635076_SNP [dm3] 2L_7635076_SNP [dm6]	C	A	4.299e^-4	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8820353	2L_8820353_SNP [dm3] 2L_8820353_SNP [dm6]	G	A	4.300e^-4	0.808	INTERGENIC
2R	13189437	2R_13189437_SNP [dm3] 2R_17301932_SNP [dm6]	T	G	4.303e^-4	0.808	INTRON mbl
2L	6922360	2L_6922360_DEL [dm3] 2L_6922360_DEL [dm6]	TGTTTGTGT	T	4.307e^-4	0.808	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	3349264	2L_3349264_SNP [dm3] 2L_3349264_SNP [dm6]	T	C	4.313e^-4	0.808	INTRON E23
2R	19242172	2R_19242172_SNP [dm3] 2R_23354649_SNP [dm6]	G	A	4.316e^-4	0.808	STOP_GAINED CG30409 UPSTREAM Rpi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16516318	3R_16516318_SNP [dm3] 3R_20690596_SNP [dm6]	C	T	4.316e^-4	0.808	SYNONYMOUS_CODING Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12198241	2L_12198241_SNP [dm3] 2L_12198241_SNP [dm6]	C	T	4.324e^-4	0.808	INTRON aret
2L	19696741	2L_19696741_SNP [dm3] 2L_19696741_SNP [dm6]	G	A	4.356e^-4	0.808	INTRON Lar

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.308e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01309
In_3R_P	0.03066
In_3R_K	0.03041

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	5.1063	0.0778
In_3R_P	6.7233	0.0347
In_3R_K	6.1554	0.0461

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1930 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18564813	2R_18564813_SNP [dm3] 2R_22677308_SNP [dm6]	G	A	2.547e^-6	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10009741	2R_10009741_SNP [dm3] 2R_14122236_SNP [dm6]	A	G	3.165e^-6	0.82	INTRON Prosap
X	3291422	X_3291422_SNP [dm3] X_3397389_SNP [dm6]	T	A	5.295e^-6	0.82	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12982733	2R_12982733_SNP [dm3] 2R_17095228_SNP [dm6]	T	A	5.496e^-6	0.82	INTRON GstS1	TF binding site mE1_TFBS_cad
2L	1465048	2L_1465048_SNP [dm3] 2L_1465048_SNP [dm6]	T	C	5.589e^-6	0.82	INTERGENIC	TF binding site mE1_TFBS_D
3L	8009091	3L_8009091_SNP [dm3] 3L_8015991_SNP [dm6]	T	C	8.906e^-6	0.82	INTRON nmo
X	8966291	X_8966291_SNP [dm3] X_9072258_SNP [dm6]	G	T	8.908e^-6	0.82	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
3R	24304904	3R_24304904_SNP [dm3] 3R_28479182_SNP [dm6]	C	A	9.169e^-6	0.82	INTERGENIC
2L	11866755	2L_11866755_SNP [dm3] 2L_11866755_SNP [dm6]	C	G	9.590e^-6	0.82	INTRON Pde1c
2L	5508550	2L_5508550_SNP [dm3] 2L_5508550_SNP [dm6]	G	C	9.647e^-6	0.82	INTERGENIC
2L	6318062	2L_6318062_SNP [dm3] 2L_6318062_SNP [dm6]	C	A	1.009e^-5	0.82	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8966295	X_8966295_SNP [dm3] X_9072262_SNP [dm6]	A	G	1.019e^-5	0.82	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
3R	24304806	3R_24304806_SNP [dm3] 3R_28479084_SNP [dm6]	T	C	1.039e^-5	0.82	INTERGENIC
3R	24655910	3R_24655910_SNP [dm3] 3R_28830188_SNP [dm6]	A	T	1.174e^-5	0.82	INTRON WASp
2L	7259478	2L_7259478_SNP [dm3] 2L_7259478_SNP [dm6]	A	G	1.209e^-5	0.82	INTRON Wnt4
2L	1453105	2L_1453105_SNP [dm3] 2L_1453105_SNP [dm6]	G	A	1.214e^-5	0.82	INTERGENIC
X	18842984	X_18842984_SNP [dm3] X_18948951_SNP [dm6]	C	T	1.231e^-5	0.82	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16763133	2L_16763133_SNP [dm3] 2L_16763133_SNP [dm6]	G	T	1.261e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6356953	3L_6356953_DEL [dm3] 3L_6363853_DEL [dm6]	TT	T	1.281e^-5	0.82	INTERGENIC
2L	19252673	2L_19252673_SNP [dm3] 2L_19252673_SNP [dm6]	T	C	1.297e^-5	0.82	INTERGENIC
3L	3757249	3L_3757249_SNP [dm3] 3L_3757249_SNP [dm6]	T	A	1.307e^-5	0.82	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	13117377	2L_13117377_SNP [dm3] 2L_13117377_SNP [dm6]	T	A	1.328e^-5	0.82	INTERGENIC
X	17576991	X_17576991_SNP [dm3] X_17682958_SNP [dm6]	C	T	1.331e^-5	0.82	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3313892	2L_3313892_SNP [dm3] 2L_3313892_SNP [dm6]	A	T	1.383e^-5	0.82	INTRON CG3277
3R	24305506	3R_24305506_SNP [dm3] 3R_28479784_SNP [dm6]	A	T	1.448e^-5	0.82	INTERGENIC
2L	8979189	2L_8979189_SNP [dm3] 2L_8979189_SNP [dm6]	C	T	1.483e^-5	0.82	INTRON CG13101
3R	7711955	3R_7711955_SNP [dm3] 3R_11886233_SNP [dm6]	A	G	1.521e^-5	0.82	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	9251776	2R_9251776_SNP [dm3] 2R_13364271_SNP [dm6]	G	T	1.582e^-5	0.82	INTERGENIC
2L	5631702	2L_5631702_SNP [dm3] 2L_5631702_SNP [dm6]	C	T	1.584e^-5	0.82	INTRON CG31646 EXON CR44822
3L	6224359	3L_6224359_SNP [dm3] 3L_6231259_SNP [dm6]	C	T	1.630e^-5	0.82	DOWNSTREAM CG13299 INTERGENIC
2L	13920021	2L_13920021_SNP [dm3] 2L_13920021_SNP [dm6]	C	G	1.632e^-5	0.82	DOWNSTREAM CG16886 INTRON Ance-3
3R	23482833	3R_23482833_SNP [dm3] 3R_27657111_SNP [dm6]	C	A	1.635e^-5	0.82	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
2L	6311301	2L_6311301_SNP [dm3] 2L_6311301_SNP [dm6]	G	A	1.652e^-5	0.82	INTRON Ddr
2L	15331475	2L_15331475_SNP [dm3] 2L_15331475_SNP [dm6]	C	T	1.676e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12340368	2L_12340368_SNP [dm3] 2L_12340368_SNP [dm6]	G	A	1.683e^-5	0.82	DOWNSTREAM CG31862 INTERGENIC
2L	10892013	2L_10892013_SNP [dm3] 2L_10892013_SNP [dm6]	C	T	1.684e^-5	0.82	INTERGENIC
2L	1464957	2L_1464957_SNP [dm3] 2L_1464957_SNP [dm6]	C	A	1.729e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	12340371	2L_12340371_SNP [dm3] 2L_12340371_SNP [dm6]	A	T	1.760e^-5	0.82	DOWNSTREAM CG31862 INTERGENIC
3L	9518219	3L_9518219_SNP [dm3] 3L_9525119_SNP [dm6]	C	T	1.797e^-5	0.82	INTRON CG33700
2L	1470930	2L_1470930_SNP [dm3] 2L_1470930_SNP [dm6]	G	C	1.800e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19354583	2R_19354583_SNP [dm3] 2R_23467060_SNP [dm6]	G	C	1.911e^-5	0.82	SYNONYMOUS_CODING CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1465016	2L_1465016_SNP [dm3] 2L_1465016_SNP [dm6]	C	T	1.952e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_D
2L	1470923	2L_1470923_SNP [dm3] 2L_1470923_SNP [dm6]	A	T	2.025e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18566287	2R_18566287_SNP [dm3] 2R_22678782_SNP [dm6]	T	A	2.044e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9251755	2R_9251755_DEL [dm3] 2R_13364250_DEL [dm6]	CC	C	2.181e^-5	0.82	INTERGENIC
3L	12822303	3L_12822303_SNP [dm3] 3L_12829203_SNP [dm6]	T	C	2.215e^-5	0.82	INTRON CG10960
3L	11551149	3L_11551149_INS [dm3] 3L_11558049_INS [dm6]	A	TTTTTT	2.217e^-5	0.82	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	22670805	3R_22670805_SNP [dm3] 3R_26845083_SNP [dm6]	C	T	2.247e^-5	0.82	INTRON Lerp
3R	7711997	3R_7711997_SNP [dm3] 3R_11886275_SNP [dm6]	T	A	2.266e^-5	0.82	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	3313890	2L_3313890_SNP [dm3] 2L_3313890_SNP [dm6]	T	G	2.279e^-5	0.82	INTRON CG3277
3L	11548657	3L_11548657_SNP [dm3] 3L_11555557_SNP [dm6]	G	A	2.298e^-5	0.82	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7710425	3R_7710425_SNP [dm3] 3R_11884703_SNP [dm6]	A	G	2.312e^-5	0.82	SYNONYMOUS_CODING mthl5 INTRON CG31368
3L	19334307	3L_19334307_SNP [dm3] 3L_19341207_SNP [dm6]	C	A	2.366e^-5	0.82	UTR_3_PRIME CG32206
2L	4936856	2L_4936856_SNP [dm3] 2L_4936856_SNP [dm6]	A	T	2.445e^-5	0.82	UPSTREAM Sgs1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	8979245	2L_8979245_SNP [dm3] 2L_8979245_SNP [dm6]	G	A	2.497e^-5	0.82	INTRON CG13101
2L	5631712	2L_5631712_SNP [dm3] 2L_5631712_SNP [dm6]	C	T	2.522e^-5	0.82	INTRON CG31646 EXON CR44822
2R	13775531	2R_13775531_DEL [dm3] 2R_17888026_DEL [dm6]	AAATACCAAAATATTA...	A	2.533e^-5	0.82	INTRON Elk & 1 other
X	3291418	X_3291418_SNP [dm3] X_3397385_SNP [dm6]	C	T	2.662e^-5	0.82	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5508542	2L_5508542_SNP [dm3] 2L_5508542_SNP [dm6]	A	C	2.734e^-5	0.82	INTERGENIC
2L	5922582	2L_5922582_DEL [dm3] 2L_5922582_DEL [dm6]	GTTAGTGC	G	2.766e^-5	0.82	UTR_3_PRIME bchs DOWNSTREAM CG9016
2R	18565434	2R_18565434_DEL [dm3] 2R_22677929_DEL [dm6]	ACATTTTTAATTTCTTAGTT...	A	2.775e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19034008	2R_19034008_SNP [dm3] 2R_23146485_SNP [dm6]	C	T	2.847e^-5	0.82	INTERGENIC
2L	6490998	2L_6490998_SNP [dm3] 2L_6490998_SNP [dm6]	T	C	2.887e^-5	0.82	UPSTREAM CG31638 & 1 other DOWNSTREAM epsilonCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1464982	2L_1464982_SNP [dm3] 2L_1464982_SNP [dm6]	A	G	2.955e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	1464943	2L_1464943_SNP [dm3] 2L_1464943_SNP [dm6]	A	C	2.998e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	3313867	2L_3313867_SNP [dm3] 2L_3313867_SNP [dm6]	A	T	3.032e^-5	0.82	INTRON CG3277
3L	12850965	3L_12850965_INS [dm3] 3L_12857865_INS [dm6]	C	CC	3.036e^-5	0.82	UTR_3_PRIME CG32107 DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
3L	6356943	3L_6356943_SNP [dm3] 3L_6363843_SNP [dm6]	A	T	3.107e^-5	0.82	INTERGENIC
2L	6338717	2L_6338717_SNP [dm3] 2L_6338717_SNP [dm6]	G	A	3.166e^-5	0.82	UPSTREAM Cpr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8979093	2L_8979093_INS [dm3] 2L_8979093_INS [dm6]	A	ATACAA	3.184e^-5	0.82	INTRON CG13101
3R	21356866	3R_21356866_SNP [dm3] 3R_25531144_SNP [dm6]	C	T	3.256e^-5	0.82	INTRON msi
3R	7816894	3R_7816894_SNP [dm3] 3R_11991172_SNP [dm6]	A	G	3.389e^-5	0.82	INTRON mfas
2L	1844748	2L_1844748_SNP [dm3] 2L_1844748_SNP [dm6]	A	C	3.407e^-5	0.82	INTRON wry
3L	6356935	3L_6356935_SNP [dm3] 3L_6363835_SNP [dm6]	T	G	3.463e^-5	0.82	INTERGENIC
3R	7712863	3R_7712863_SNP [dm3] 3R_11887141_SNP [dm6]	T	A	3.472e^-5	0.82	UTR_5_PRIME mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7771567	3R_7771567_SNP [dm3] 3R_11945845_SNP [dm6]	C	G	3.538e^-5	0.82	INTRON Cad87A
3L	1717786	3L_1717786_SNP [dm3] 3L_1717786_SNP [dm6]	T	A	3.558e^-5	0.82	NON_SYNONYMOUS_CODING drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9867176	2R_9867176_DEL [dm3] 2R_13979671_DEL [dm6]	GTTG	G	3.630e^-5	0.82	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19283216	2L_19283216_SNP [dm3] 2L_19283216_SNP [dm6]	C	A	3.652e^-5	0.82	INTERGENIC
3R	9244987	3R_9244987_DEL [dm3] 3R_13419265_DEL [dm6]	TA	T	3.674e^-5	0.82	INTERGENIC
2L	16356056	2L_16356056_SNP [dm3] 2L_16356056_SNP [dm6]	C	T	3.784e^-5	0.82	NON_SYNONYMOUS_CODING CaBP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	1470935	2L_1470935_SNP [dm3] 2L_1470935_SNP [dm6]	C	G	3.789e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
X	8966284	X_8966284_SNP [dm3] X_9072251_SNP [dm6]	C	A	3.805e^-5	0.82	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
X	12915549	X_12915549_SNP [dm3] X_13021516_SNP [dm6]	C	G	3.887e^-5	0.82	UPSTREAM CG2209 INTRON rad
3R	24655952	3R_24655952_SNP [dm3] 3R_28830230_SNP [dm6]	G	T	3.906e^-5	0.82	INTRON WASp
3R	23201884	3R_23201884_SNP [dm3] 3R_27376162_SNP [dm6]	C	T	3.916e^-5	0.82	UTR_3_PRIME side
2L	1465104	2L_1465104_SNP [dm3] 2L_1465104_SNP [dm6]	A	G	3.968e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_D
3R	3222190	3R_3222190_SNP [dm3] 3R_7396468_SNP [dm6]	A	C	4.041e^-5	0.82	INTERGENIC
3R	12243902	3R_12243902_SNP [dm3] 3R_16418180_SNP [dm6]	C	A	4.271e^-5	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	6356972	3L_6356972_SNP [dm3] 3L_6363872_SNP [dm6]	C	G	4.300e^-5	0.82	INTERGENIC
2R	18564962	2R_18564962_SNP [dm3] 2R_22677457_SNP [dm6]	G	T	4.328e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7116050	3R_7116050_SNP [dm3] 3R_11290328_SNP [dm6]	G	T	4.344e^-5	0.82	INTRON CR31386
3L	1717626	3L_1717626_SNP [dm3] 3L_1717626_SNP [dm6]	G	A	4.407e^-5	0.82	SYNONYMOUS_CODING drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4936895	2L_4936895_SNP [dm3] 2L_4936895_SNP [dm6]	C	A	4.531e^-5	0.82	UPSTREAM Sgs1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	6342486	2L_6342486_SNP [dm3] 2L_6342486_SNP [dm6]	A	G	4.568e^-5	0.82	INTRON Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7753585	3R_7753585_SNP [dm3] 3R_11927863_SNP [dm6]	C	T	4.614e^-5	0.82	INTRON Cad87A
2R	16354065	2R_16354065_SNP [dm3] 2R_20466560_SNP [dm6]	G	A	4.667e^-5	0.82	INTRON CG12484
2L	3333554	2L_3333554_SNP [dm3] 2L_3333554_SNP [dm6]	T	C	4.769e^-5	0.82	DOWNSTREAM CG3285 INTRON CG15408	TF binding site mE1_TFBS_cad
2R	19034024	2R_19034024_SNP [dm3] 2R_23146501_SNP [dm6]	C	T	4.801e^-5	0.82	INTERGENIC
2R	7753768	2R_7753768_SNP [dm3] 2R_11866263_SNP [dm6]	A	G	4.840e^-5	0.82	SPLICE_SITE_REGION Damm UPSTREAM CR42532 INTRON Damm
2L	4936843	2L_4936843_DEL [dm3] 2L_4936843_DEL [dm6]	GAAAAAACGGA...	T	4.862e^-5	0.82	UPSTREAM Sgs1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	9165596	3R_9165596_SNP [dm3] 3R_13339874_SNP [dm6]	G	A	4.954e^-5	0.82	INTRON PK2-R1
X	12915559	X_12915559_SNP [dm3] X_13021526_SNP [dm6]	A	G	4.955e^-5	0.82	UPSTREAM CG2209 INTRON rad
2L	4936857	2L_4936857_DEL [dm3] 2L_4936857_DEL [dm6]	GCCACT	G	4.965e^-5	0.82	UPSTREAM Sgs1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	4579262	3L_4579262_DEL [dm3] 3L_4579262_DEL [dm6]	TT	T	4.976e^-5	0.82	INTRON CG42540
2R	16824011	2R_16824011_SNP [dm3] 2R_20936506_SNP [dm6]	C	G	4.981e^-5	0.82	NON_SYNONYMOUS_CODING Rx	TF binding site mE1_TFBS_chinmo
3L	6224769	3L_6224769_SNP [dm3] 3L_6231669_SNP [dm6]	G	A	5.068e^-5	0.82	DOWNSTREAM CG13299 & 1 other INTERGENIC
2R	18554353	2R_18554353_SNP [dm3] 2R_22666848_SNP [dm6]	A	G	5.092e^-5	0.82	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	3755512	3L_3755512_SNP [dm3] 3L_3755512_SNP [dm6]	T	C	5.095e^-5	0.82	UPSTREAM ppk27 INTRON CG32264
2L	6334854	2L_6334854_SNP [dm3] 2L_6334854_SNP [dm6]	C	T	5.158e^-5	0.82	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9513593	3L_9513593_SNP [dm3] 3L_9520493_SNP [dm6]	G	T	5.180e^-5	0.82	INTRON CG33700
3R	7712672	3R_7712672_SNP [dm3] 3R_11886950_SNP [dm6]	C	T	5.226e^-5	0.82	UTR_5_PRIME mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3757219	3L_3757219_SNP [dm3] 3L_3757219_SNP [dm6]	A	C	5.239e^-5	0.82	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	7753622	3R_7753622_SNP [dm3] 3R_11927900_SNP [dm6]	T	A	5.255e^-5	0.82	INTRON Cad87A
3L	12850889	3L_12850889_INS [dm3] 3L_12857789_INS [dm6]	A	ATCATTTGGC	5.355e^-5	0.82	UTR_3_PRIME CG32107 DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
3L	5767977	3L_5767977_SNP [dm3] 3L_5774877_SNP [dm6]	T	C	5.374e^-5	0.82	UTR_3_PRIME scny INTRON scny
2L	12340601	2L_12340601_SNP [dm3] 2L_12340601_SNP [dm6]	A	C	5.435e^-5	0.82	INTERGENIC
3L	11551151	3L_11551151_SNP [dm3] 3L_11558051_SNP [dm6]	A	T	5.462e^-5	0.82	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	7259497	2L_7259497_SNP [dm3] 2L_7259497_SNP [dm6]	T	C	5.462e^-5	0.82	INTRON Wnt4
3R	7772063	3R_7772063_SNP [dm3] 3R_11946341_SNP [dm6]	A	T	5.467e^-5	0.82	INTRON Cad87A
2L	19257818	2L_19257818_SNP [dm3] 2L_19257818_SNP [dm6]	T	G	5.483e^-5	0.82	INTERGENIC
3L	5144213	3L_5144213_SNP [dm3] 3L_5151113_SNP [dm6]	G	A	5.613e^-5	0.82	SYNONYMOUS_CODING Gen	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16569828	2L_16569828_SNP [dm3] 2L_16569828_SNP [dm6]	T	A	5.670e^-5	0.82	INTRON CG42389
3R	18525972	3R_18525972_SNP [dm3] 3R_22700250_SNP [dm6]	T	C	5.721e^-5	0.82	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
3R	26849388	3R_26849388_SNP [dm3] 3R_31023666_SNP [dm6]	A	C	5.796e^-5	0.82	INTERGENIC
2L	7253430	2L_7253430_SNP [dm3] 2L_7253430_SNP [dm6]	T	C	5.875e^-5	0.82	UPSTREAM CG13786 INTERGENIC
3R	13795765	3R_13795765_SNP [dm3] 3R_17970043_SNP [dm6]	C	A	5.946e^-5	0.82	INTRON cpo
3L	6726857	3L_6726857_SNP [dm3] 3L_6733757_SNP [dm6]	G	T	5.966e^-5	0.82	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	11968425	2L_11968425_SNP [dm3] 2L_11968425_SNP [dm6]	A	T	6.009e^-5	0.82	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	4375293	2R_4375293_SNP [dm3] 2R_8487788_SNP [dm6]	T	G	6.095e^-5	0.82	INTRON mtt
2R	13133970	2R_13133970_SNP [dm3] 2R_17246465_SNP [dm6]	A	G	6.142e^-5	0.82	UPSTREAM CG18469 DOWNSTREAM CG12699 INTRON mbl
3L	8991679	3L_8991679_SNP [dm3] 3L_8998579_SNP [dm6]	C	T	6.227e^-5	0.82	NON_SYNONYMOUS_CODING CG5087 UPSTREAM smg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23717518	3R_23717518_SNP [dm3] 3R_27891796_SNP [dm6]	C	T	6.270e^-5	0.82	INTRON CG34353
3R	9157054	3R_9157054_SNP [dm3] 3R_13331332_SNP [dm6]	C	A	6.279e^-5	0.82	SYNONYMOUS_CODING PK2-R2
3R	7710356	3R_7710356_SNP [dm3] 3R_11884634_SNP [dm6]	A	T	6.289e^-5	0.82	SYNONYMOUS_CODING mthl5 INTRON CG31368
2L	6336397	2L_6336397_SNP [dm3] 2L_6336397_SNP [dm6]	C	G	6.299e^-5	0.82	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6224533	3L_6224533_SNP [dm3] 3L_6231433_SNP [dm6]	C	A	6.308e^-5	0.82	DOWNSTREAM CG13299 INTERGENIC
2R	10009669	2R_10009669_SNP [dm3] 2R_14122164_SNP [dm6]	T	C	6.309e^-5	0.82	INTRON Prosap
2L	19306743	2L_19306743_SNP [dm3] 2L_19306743_SNP [dm6]	C	A	6.326e^-5	0.82	INTERGENIC
2L	19283230	2L_19283230_SNP [dm3] 2L_19283230_SNP [dm6]	T	A	6.428e^-5	0.82	INTERGENIC
3L	6356962	3L_6356962_SNP [dm3] 3L_6363862_SNP [dm6]	C	T	6.451e^-5	0.82	INTERGENIC
2L	12340614	2L_12340614_SNP [dm3] 2L_12340614_SNP [dm6]	A	G	6.627e^-5	0.82	INTERGENIC
3L	17173663	3L_17173663_SNP [dm3] 3L_17180563_SNP [dm6]	T	A	6.641e^-5	0.82	INTRON Rbp6
X	6198285	X_6198285_SNP [dm3] X_6304252_SNP [dm6]	A	T	6.650e^-5	0.82	INTRON CG3823	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8886772	2L_8886772_SNP [dm3] 2L_8886772_SNP [dm6]	C	A	6.656e^-5	0.82	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	4579243	3L_4579243_SNP [dm3] 3L_4579243_SNP [dm6]	G	C	6.661e^-5	0.82	INTRON CG42540
3R	15850066	3R_15850066_SNP [dm3] 3R_20024344_SNP [dm6]	T	C	6.677e^-5	0.82	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	24656621	3R_24656621_SNP [dm3] 3R_28830899_SNP [dm6]	C	T	6.806e^-5	0.82	INTRON WASp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	5572736	2R_5572736_SNP [dm3] 2R_9685231_SNP [dm6]	G	T	6.911e^-5	0.82	INTERGENIC
2L	11795059	2L_11795059_DEL [dm3] 2L_11795059_DEL [dm6]	TCA	T	6.921e^-5	0.82	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
2R	18869641	2R_18869641_SNP [dm3] 2R_22982118_SNP [dm6]	C	T	6.959e^-5	0.82	DOWNSTREAM CG32834 INTERGENIC
2R	18566058	2R_18566058_SNP [dm3] 2R_22678553_SNP [dm6]	G	A	6.965e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12097206	2L_12097206_SNP [dm3] 2L_12097206_SNP [dm6]	G	C	7.006e^-5	0.82	NON_SYNONYMOUS_CODING Mt2 UPSTREAM CG6712 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	18869358	X_18869358_SNP [dm3] X_18975325_SNP [dm6]	C	T	7.034e^-5	0.82	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	7140625	3R_7140625_DEL [dm3] 3R_11314903_DEL [dm6]	CC	C	7.069e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1841848	2L_1841848_SNP [dm3] 2L_1841848_SNP [dm6]	G	C	7.069e^-5	0.82	INTRON wry
3L	6224249	3L_6224249_SNP [dm3] 3L_6231149_SNP [dm6]	C	T	7.072e^-5	0.82	DOWNSTREAM CG13299 INTERGENIC
2L	7400036	2L_7400036_SNP [dm3] 2L_7400036_SNP [dm6]	C	A	7.111e^-5	0.82	DOWNSTREAM CR44079 INTERGENIC
3L	8009080	3L_8009080_SNP [dm3] 3L_8015980_SNP [dm6]	A	G	7.147e^-5	0.82	INTRON nmo
3R	24304844	3R_24304844_SNP [dm3] 3R_28479122_SNP [dm6]	A	C	7.208e^-5	0.82	INTERGENIC
2L	6336073	2L_6336073_SNP [dm3] 2L_6336073_SNP [dm6]	C	T	7.214e^-5	0.82	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2785098	X_2785098_SNP [dm3] X_2891065_SNP [dm6]	A	G	7.236e^-5	0.82	INTRON kirre & 1 other	TF binding site mE1_TFBS_chinmo
3L	10853062	3L_10853062_SNP [dm3] 3L_10859962_SNP [dm6]	A	C	7.282e^-5	0.82	INTRON tna	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3240854	2R_3240854_SNP [dm3] 2R_7353349_SNP [dm6]	A	G	7.339e^-5	0.82	SYNONYMOUS_CODING Dscam1 INTRON Dscam1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	2739019	3L_2739019_SNP [dm3] 3L_2739019_SNP [dm6]	C	A	7.349e^-5	0.82	UPSTREAM Acp62F INTRON Mrtf
2L	4936831	2L_4936831_SNP [dm3] 2L_4936831_SNP [dm6]	T	A	7.413e^-5	0.82	UPSTREAM Sgs1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	2791680	2L_2791680_DEL [dm3] 2L_2791680_DEL [dm6]	TGT	T	7.415e^-5	0.82	INTRON Syt1
3R	24304956	3R_24304956_DEL [dm3] 3R_28479234_DEL [dm6]	AAGAACTA	A	7.459e^-5	0.82	INTERGENIC
2R	18565495	2R_18565495_SNP [dm3] 2R_22677990_SNP [dm6]	A	G	7.622e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13920014	2L_13920014_INS [dm3] 2L_13920014_INS [dm6]	C	CCAATGCGAGGC...	7.634e^-5	0.82	DOWNSTREAM CG16886 INTRON Ance-3
3R	24655951	3R_24655951_SNP [dm3] 3R_28830229_SNP [dm6]	G	T	7.646e^-5	0.82	INTRON WASp
3L	1718379	3L_1718379_SNP [dm3] 3L_1718379_SNP [dm6]	T	A	7.754e^-5	0.82	INTRON drpr	TF binding site BDTNP1_TFBS_sna
X	8966280	X_8966280_SNP [dm3] X_9072247_SNP [dm6]	A	T	7.782e^-5	0.82	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
2L	5522133	2L_5522133_SNP [dm3] 2L_5522133_SNP [dm6]	C	A	7.792e^-5	0.82	DOWNSTREAM cl INTRON CG7371
2R	10009729	2R_10009729_SNP [dm3] 2R_14122224_SNP [dm6]	T	A	7.833e^-5	0.82	INTRON Prosap
2R	20224470	2R_20224470_DEL [dm3] 2R_24336947_DEL [dm6]	TTTGTTTTGGTGCGGTGAAT...	T	7.946e^-5	0.82	UPSTREAM CR44282 INTERGENIC
2L	4936865	2L_4936865_SNP [dm3] 2L_4936865_SNP [dm6]	A	T	8.050e^-5	0.82	UPSTREAM Sgs1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	6449703	2L_6449703_SNP [dm3] 2L_6449703_SNP [dm6]	C	T	8.070e^-5	0.82	UTR_3_PRIME retm
3R	18526001	3R_18526001_SNP [dm3] 3R_22700279_SNP [dm6]	G	A	8.077e^-5	0.82	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
3L	23767552	3L_23767552_SNP [dm3] 3L_23774452_SNP [dm6]	G	A	8.100e^-5	0.82	INTERGENIC
3R	22988459	3R_22988459_SNP [dm3] 3R_27162737_SNP [dm6]	T	C	8.119e^-5	0.82	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
2L	8767896	2L_8767896_SNP [dm3] 2L_8767896_SNP [dm6]	G	A	8.155e^-5	0.82	SYNONYMOUS_CODING CG9463
2R	13591086	2R_13591086_SNP [dm3] 2R_17703581_SNP [dm6]	C	G	8.158e^-5	0.82	UTR_3_PRIME CG6424 DOWNSTREAM snoRNA:U27:54Eb & 3 others
3R	18912294	3R_18912294_SNP [dm3] 3R_23086572_SNP [dm6]	A	G	8.204e^-5	0.82	INTRON CG13830
3R	24655925	3R_24655925_SNP [dm3] 3R_28830203_SNP [dm6]	T	C	8.284e^-5	0.82	INTRON WASp
3R	22671098	3R_22671098_SNP [dm3] 3R_26845376_SNP [dm6]	G	A	8.288e^-5	0.82	INTRON Lerp
2R	9867406	2R_9867406_SNP [dm3] 2R_13979901_SNP [dm6]	A	T	8.307e^-5	0.82	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6338771	2L_6338771_SNP [dm3] 2L_6338771_SNP [dm6]	C	A	8.366e^-5	0.82	UPSTREAM Cpr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13347097	2L_13347097_INS [dm3] 2L_13347097_INS [dm6]	C	CACCT	8.391e^-5	0.82	UPSTREAM CG16826 INTERGENIC
X	18868416	X_18868416_SNP [dm3] X_18974383_SNP [dm6]	C	A	8.422e^-5	0.82	INTRON CG43759	TF binding site mE1_TFBS_inv
2L	12339560	2L_12339560_DEL [dm3] 2L_12339560_DEL [dm6]	TTACTATT	T	8.433e^-5	0.82	DOWNSTREAM CG31862 INTERGENIC
3R	12715775	3R_12715775_SNP [dm3] 3R_16890053_SNP [dm6]	T	C	8.638e^-5	0.82	INTRON iab-8
3R	18227771	3R_18227771_SNP [dm3] 3R_22402049_SNP [dm6]	A	T	8.659e^-5	0.82	UPSTREAM CG13856 INTERGENIC
3L	10877838	3L_10877838_SNP [dm3] 3L_10884738_SNP [dm6]	C	T	8.718e^-5	0.82	SYNONYMOUS_CODING CG6404	TF binding site mE1_TFBS_sens
3L	4736710	3L_4736710_SNP [dm3] 3L_4736710_SNP [dm6]	T	A	8.724e^-5	0.82	INTRON RhoGEF64C
X	9592774	X_9592774_SNP [dm3] X_9698741_SNP [dm6]	G	A	8.821e^-5	0.82	INTERGENIC
3L	19630877	3L_19630877_SNP [dm3] 3L_19637777_SNP [dm6]	A	T	8.831e^-5	0.82	UTR_3_PRIME CG8786	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	19849516	2R_19849516_SNP [dm3] 2R_23961993_SNP [dm6]	C	T	8.848e^-5	0.82	UPSTREAM Fmo-1 DOWNSTREAM alpha-catenin-related INTRON CG13566
3R	15850077	3R_15850077_SNP [dm3] 3R_20024355_SNP [dm6]	G	A	8.869e^-5	0.82	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	8981649	2L_8981649_SNP [dm3] 2L_8981649_SNP [dm6]	A	C	8.890e^-5	0.82	DOWNSTREAM CG18662 INTRON CG13101
2L	12339536	2L_12339536_SNP [dm3] 2L_12339536_SNP [dm6]	T	C	8.890e^-5	0.82	DOWNSTREAM CG31862 INTERGENIC
2L	12339543	2L_12339543_SNP [dm3] 2L_12339543_SNP [dm6]	C	T	8.897e^-5	0.82	DOWNSTREAM CG31862 INTERGENIC
2L	6317873	2L_6317873_SNP [dm3] 2L_6317873_SNP [dm6]	G	C	8.948e^-5	0.82	INTRON Ddr	TF binding site mE1_TFBS_cad
X	16893808	X_16893808_SNP [dm3] X_16999775_SNP [dm6]	C	G	8.959e^-5	0.82	INTRON CG45002
2L	12338810	2L_12338810_SNP [dm3] 2L_12338810_SNP [dm6]	T	C	9.086e^-5	0.82	UPSTREAM CG31862 INTERGENIC
X	18847593	X_18847593_SNP [dm3] X_18953560_SNP [dm6]	G	T	9.092e^-5	0.82	INTRON CG43759
2R	5569126	2R_5569126_SNP [dm3] 2R_9681621_SNP [dm6]	G	A	9.134e^-5	0.82	INTRON Mmp2
3R	16162531	3R_16162531_SNP [dm3] 3R_20336809_SNP [dm6]	A	G	9.158e^-5	0.82	INTERGENIC
2L	12338908	2L_12338908_SNP [dm3] 2L_12338908_SNP [dm6]	C	T	9.174e^-5	0.82	SYNONYMOUS_CODING CG31862
3L	6224724	3L_6224724_SNP [dm3] 3L_6231624_SNP [dm6]	A	G	9.184e^-5	0.82	DOWNSTREAM CG13299 & 1 other INTERGENIC
2L	18881503	2L_18881503_SNP [dm3] 2L_18881503_SNP [dm6]	G	A	9.239e^-5	0.821	UPSTREAM tup INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17173787	3L_17173787_SNP [dm3] 3L_17180687_SNP [dm6]	A	C	9.292e^-5	0.821	INTRON Rbp6
2L	2724073	2L_2724073_SNP [dm3] 2L_2724073_SNP [dm6]	C	G	9.324e^-5	0.821	INTERGENIC
X	18847973	X_18847973_SNP [dm3] X_18953940_SNP [dm6]	T	C	9.454e^-5	0.829	INTRON CG43759
X	8966282	X_8966282_SNP [dm3] X_9072249_SNP [dm6]	G	A	9.555e^-5	0.832	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
2L	8978908	2L_8978908_SNP [dm3] 2L_8978908_SNP [dm6]	A	G	9.619e^-5	0.832	NON_SYNONYMOUS_CODING CG13101
3L	1167157	3L_1167157_SNP [dm3] 3L_1167157_SNP [dm6]	A	G	9.640e^-5	0.832	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	9143803	X_9143803_SNP [dm3] X_9249770_SNP [dm6]	C	A	9.706e^-5	0.832	UPSTREAM CG17754 INTRON Dsor1	TF binding site BDTNP1_TFBS_dl
3L	6726632	3L_6726632_SNP [dm3] 3L_6733532_SNP [dm6]	T	G	9.734e^-5	0.832	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	1464765	2L_1464765_SNP [dm3] 2L_1464765_SNP [dm6]	A	G	9.841e^-5	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	1459347	2L_1459347_SNP [dm3] 2L_1459347_SNP [dm6]	A	G	9.935e^-5	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9297066	2L_9297066_SNP [dm3] 2L_9297066_SNP [dm6]	G	A	1.003e^-4	0.832	UTR_3_PRIME Ggamma30A
3R	22876855	3R_22876855_SNP [dm3] 3R_27051133_SNP [dm6]	A	G	1.004e^-4	0.832	DOWNSTREAM TwdlT INTRON RYa-R
3L	17808834	3L_17808834_SNP [dm3] 3L_17815734_SNP [dm6]	C	T	1.018e^-4	0.832	SYNONYMOUS_CODING Ir75a
3R	7174174	3R_7174174_SNP [dm3] 3R_11348452_SNP [dm6]	A	G	1.018e^-4	0.832	UTR_5_PRIME KP78b UTR_3_PRIME KP78a UPSTREAM KP78b INTRON pros	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7753649	3R_7753649_DEL [dm3] 3R_11927927_DEL [dm6]	CTT	C	1.019e^-4	0.832	INTRON Cad87A
3R	7751121	3R_7751121_SNP [dm3] 3R_11925399_SNP [dm6]	A	C	1.020e^-4	0.832	INTRON Cad87A
2L	6501621	2L_6501621_SNP [dm3] 2L_6501621_SNP [dm6]	T	C	1.021e^-4	0.832	INTRON CG31637	TF binding site mE1_TFBS_sens
3L	5210029	3L_5210029_SNP [dm3] 3L_5216929_SNP [dm6]	A	C	1.022e^-4	0.832	INTRON shep
2L	2724071	2L_2724071_SNP [dm3] 2L_2724071_SNP [dm6]	C	G	1.042e^-4	0.832	INTERGENIC
X	19934802	X_19934802_SNP [dm3] X_20040769_SNP [dm6]	C	T	1.043e^-4	0.832	INTRON Dop2R
3L	8650506	3L_8650506_SNP [dm3] 3L_8657406_SNP [dm6]	T	G	1.044e^-4	0.832	INTERGENIC
3R	24304745	3R_24304745_SNP [dm3] 3R_28479023_SNP [dm6]	A	C	1.047e^-4	0.832	INTERGENIC
2R	6024157	2R_6024157_SNP [dm3] 2R_10136652_SNP [dm6]	C	A	1.058e^-4	0.832	SYNONYMOUS_CODING gem
3L	3461490	3L_3461490_SNP [dm3] 3L_3461490_SNP [dm6]	G	A	1.071e^-4	0.832	UPSTREAM eIF5B & 1 other INTRON armi	TF binding site BDTNP1_TFBS_dl
3R	15220555	3R_15220555_SNP [dm3] 3R_19394833_SNP [dm6]	T	C	1.071e^-4	0.832	SYNONYMOUS_CODING CG3739 INTRON Ino80
3L	8004453	3L_8004453_SNP [dm3] 3L_8011353_SNP [dm6]	T	A	1.081e^-4	0.832	INTRON nmo
2L	12176995	2L_12176995_DEL [dm3] 2L_12176995_DEL [dm6]	ATA	A	1.081e^-4	0.832	INTRON aret & 1 other
2R	14620329	2R_14620329_SNP [dm3] 2R_18732824_SNP [dm6]	T	C	1.081e^-4	0.832	INTRON Hs3st-A
2L	1470926	2L_1470926_SNP [dm3] 2L_1470926_SNP [dm6]	G	A	1.085e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_HSA
X	8870887	X_8870887_SNP [dm3] X_8976854_SNP [dm6]	G	C	1.086e^-4	0.832	DOWNSTREAM CR43836 INTRON rdgA & 1 other
3L	6224718	3L_6224718_SNP [dm3] 3L_6231618_SNP [dm6]	C	T	1.089e^-4	0.832	DOWNSTREAM CG13299 & 1 other INTERGENIC
2L	3296595	2L_3296595_SNP [dm3] 2L_3296595_SNP [dm6]	T	G	1.092e^-4	0.832	SYNONYMOUS_CODING CG9663
2L	16570811	2L_16570811_SNP [dm3] 2L_16570811_SNP [dm6]	T	A	1.094e^-4	0.832	INTRON CG42389
2R	15314361	2R_15314361_SNP [dm3] 2R_19426856_SNP [dm6]	T	C	1.098e^-4	0.832	INTRON CalpA
3R	17616690	3R_17616690_SNP [dm3] 3R_21790968_SNP [dm6]	A	T	1.100e^-4	0.832	INTRON CASK
2R	6606504	2R_6606504_SNP [dm3] 2R_10718999_SNP [dm6]	A	C	1.104e^-4	0.832	DOWNSTREAM stan INTRON stan
3L	6173826	3L_6173826_SNP [dm3] 3L_6180726_SNP [dm6]	A	T	1.106e^-4	0.832	NON_SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8050068	2L_8050068_SNP [dm3] 2L_8050068_SNP [dm6]	C	T	1.111e^-4	0.832	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_cad
3R	22671190	3R_22671190_SNP [dm3] 3R_26845468_SNP [dm6]	C	T	1.129e^-4	0.832	INTRON Lerp
2L	13261929	2L_13261929_INS [dm3] 2L_13261929_INS [dm6]	T	TG	1.130e^-4	0.832	INTRON CG44085
2R	18565417	2R_18565417_SNP [dm3] 2R_22677912_SNP [dm6]	T	A	1.131e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6056236	3L_6056236_SNP [dm3] 3L_6063136_SNP [dm6]	C	T	1.148e^-4	0.832	UPSTREAM CG10472 INTERGENIC
3R	12022082	3R_12022082_SNP [dm3] 3R_16196360_SNP [dm6]	A	G	1.148e^-4	0.832	SYNONYMOUS_CODING sra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7175467	2L_7175467_SNP [dm3] 2L_7175467_SNP [dm6]	G	A	1.149e^-4	0.832	UPSTREAM CR44610 INTERGENIC
2R	18565079	2R_18565079_SNP [dm3] 2R_22677574_SNP [dm6]	G	A	1.152e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6904499	2L_6904499_SNP [dm3] 2L_6904499_SNP [dm6]	A	T	1.159e^-4	0.832	INTRON Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19307030	2L_19307030_SNP [dm3] 2L_19307030_SNP [dm6]	T	C	1.160e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23551024	3R_23551024_SNP [dm3] 3R_27725302_SNP [dm6]	C	T	1.164e^-4	0.832	INTERGENIC
3R	9256910	3R_9256910_SNP [dm3] 3R_13431188_SNP [dm6]	G	C	1.169e^-4	0.832	INTRON yrt
X	3049016	X_3049016_SNP [dm3] X_3154983_SNP [dm6]	T	C	1.170e^-4	0.832	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19306829	2L_19306829_SNP [dm3] 2L_19306829_SNP [dm6]	C	A	1.171e^-4	0.832	INTERGENIC
2L	19195099	2L_19195099_SNP [dm3] 2L_19195099_SNP [dm6]	C	A	1.171e^-4	0.832	INTRON drl	regulatory region REDfly_CRMs
2L	6339162	2L_6339162_SNP [dm3] 2L_6339162_SNP [dm6]	T	A	1.174e^-4	0.832	UPSTREAM Pez & 1 other INTRON Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9723000	3R_9723000_SNP [dm3] 3R_13897278_SNP [dm6]	C	T	1.176e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19128670	2L_19128670_SNP [dm3] 2L_19128670_SNP [dm6]	C	T	1.185e^-4	0.835	SYNONYMOUS_CODING l_2_37Cd DOWNSTREAM Aats-asn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14421969	2R_14421969_SNP [dm3] 2R_18534464_SNP [dm6]	A	C	1.190e^-4	0.836	SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo
2L	8981959	2L_8981959_SNP [dm3] 2L_8981959_SNP [dm6]	A	G	1.196e^-4	0.837	DOWNSTREAM CG18662 INTRON CG13101
X	18847595	X_18847595_SNP [dm3] X_18953562_SNP [dm6]	A	G	1.212e^-4	0.842	INTRON CG43759
2L	9364900	2L_9364900_SNP [dm3] 2L_9364900_SNP [dm6]	G	T	1.212e^-4	0.842	EXON CR43404
2R	16096989	2R_16096989_SNP [dm3] 2R_20209484_SNP [dm6]	C	G	1.222e^-4	0.842	INTERGENIC
2L	7410941	2L_7410941_SNP [dm3] 2L_7410941_SNP [dm6]	A	G	1.227e^-4	0.842	UTR_5_PRIME CG15818	TF binding site mE1_TFBS_ttk
3R	24747991	3R_24747991_SNP [dm3] 3R_28922269_SNP [dm6]	G	C	1.230e^-4	0.842	UTR_3_PRIME Doa UPSTREAM CG11828 DOWNSTREAM Doa
2R	13657838	2R_13657838_DEL [dm3] 2R_17770333_DEL [dm6]	AAACAT	A	1.233e^-4	0.842	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	24304764	3R_24304764_SNP [dm3] 3R_28479042_SNP [dm6]	A	T	1.247e^-4	0.842	INTERGENIC
3R	24304765	3R_24304765_SNP [dm3] 3R_28479043_SNP [dm6]	T	G	1.247e^-4	0.842	INTERGENIC
3L	6224223	3L_6224223_SNP [dm3] 3L_6231123_SNP [dm6]	G	T	1.250e^-4	0.842	DOWNSTREAM CG13299 INTERGENIC
2R	18564989	2R_18564989_SNP [dm3] 2R_22677484_SNP [dm6]	A	G	1.251e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18564991	2R_18564991_SNP [dm3] 2R_22677486_SNP [dm6]	A	T	1.253e^-4	0.842	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24304795	3R_24304795_SNP [dm3] 3R_28479073_SNP [dm6]	G	A	1.264e^-4	0.846	INTERGENIC
3L	4691566	3L_4691566_SNP [dm3] 3L_4691566_SNP [dm6]	T	C	1.276e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6338479	2L_6338479_SNP [dm3] 2L_6338479_SNP [dm6]	T	G	1.311e^-4	0.846	UTR_5_PRIME Pez UPSTREAM Cpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1152076	3L_1152076_SNP [dm3] 3L_1152076_SNP [dm6]	G	A	1.314e^-4	0.846	INTRON bab2
3R	7710319	3R_7710319_SNP [dm3] 3R_11884597_SNP [dm6]	G	A	1.317e^-4	0.846	SYNONYMOUS_CODING mthl5 INTRON CG31368
3L	10243480	3L_10243480_SNP [dm3] 3L_10250380_SNP [dm6]	G	A	1.323e^-4	0.846	INTERGENIC
2R	14268823	2R_14268823_SNP [dm3] 2R_18381318_SNP [dm6]	G	A	1.324e^-4	0.846	DOWNSTREAM CG43202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8808893	3L_8808893_SNP [dm3] 3L_8815793_SNP [dm6]	C	T	1.324e^-4	0.846	INTERGENIC
2L	7409174	2L_7409174_SNP [dm3] 2L_7409174_SNP [dm6]	A	G	1.327e^-4	0.846	SYNONYMOUS_CODING CG5181 DOWNSTREAM CG5177
X	19983171	X_19983171_SNP [dm3] X_20089138_SNP [dm6]	G	T	1.335e^-4	0.846	INTERGENIC
3R	10284435	3R_10284435_SNP [dm3] 3R_14458713_SNP [dm6]	G	A	1.342e^-4	0.846	INTRON cv-c
3L	9511648	3L_9511648_SNP [dm3] 3L_9518548_SNP [dm6]	A	G	1.344e^-4	0.846	INTRON CG33700
3R	9919170	3R_9919170_SNP [dm3] 3R_14093448_SNP [dm6]	G	A	1.348e^-4	0.846	INTRON CCHa1
3L	16135763	3L_16135763_SNP [dm3] 3L_16142663_SNP [dm6]	C	T	1.349e^-4	0.846	NON_SYNONYMOUS_CODING CG32152 UTR_5_PRIME CG5151 INTRON CG5151
2L	1631294	2L_1631294_SNP [dm3] 2L_1631294_SNP [dm6]	A	G	1.354e^-4	0.846	INTERGENIC
2L	9364903	2L_9364903_SNP [dm3] 2L_9364903_SNP [dm6]	G	C	1.355e^-4	0.846	EXON CR43404
X	13497509	X_13497509_SNP [dm3] X_13603476_SNP [dm6]	A	T	1.362e^-4	0.846	UPSTREAM up & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18565042	2R_18565042_DEL [dm3] 2R_22677537_DEL [dm6]	ATCCTCAGCCCATCTATCAC...	A	1.365e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6224244	3L_6224244_SNP [dm3] 3L_6231144_SNP [dm6]	G	T	1.372e^-4	0.846	DOWNSTREAM CG13299 INTERGENIC
3L	2045569	3L_2045569_SNP [dm3] 3L_2045569_SNP [dm6]	A	G	1.373e^-4	0.846	SYNONYMOUS_CODING sls INTRON sls
3L	11859826	3L_11859826_SNP [dm3] 3L_11866726_SNP [dm6]	G	C	1.378e^-4	0.846	INTRON CG44837
3R	21509607	3R_21509607_SNP [dm3] 3R_25683885_SNP [dm6]	G	A	1.381e^-4	0.846	UTR_3_PRIME RpL27 DOWNSTREAM RpL27 & 1 other
2L	14693179	2L_14693179_SNP [dm3] 2L_14693179_SNP [dm6]	A	G	1.383e^-4	0.846	INTERGENIC
2L	8981614	2L_8981614_SNP [dm3] 2L_8981614_SNP [dm6]	C	T	1.386e^-4	0.846	DOWNSTREAM CG18662 INTRON CG13101
2L	1470917	2L_1470917_SNP [dm3] 2L_1470917_SNP [dm6]	A	G	1.389e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3755511	3L_3755511_SNP [dm3] 3L_3755511_SNP [dm6]	C	T	1.390e^-4	0.846	UPSTREAM ppk27 INTRON CG32264
3L	6224664	3L_6224664_SNP [dm3] 3L_6231564_SNP [dm6]	C	T	1.391e^-4	0.846	DOWNSTREAM CG13299 & 1 other INTERGENIC
3R	6842491	3R_6842491_SNP [dm3] 3R_11016769_SNP [dm6]	T	C	1.395e^-4	0.846	INTRON CG34114
3R	19925258	3R_19925258_SNP [dm3] 3R_24099536_SNP [dm6]	G	C	1.398e^-4	0.846	INTRON 4EHP
3R	25600556	3R_25600556_SNP [dm3] 3R_29774834_SNP [dm6]	T	A	1.399e^-4	0.846	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9258456	2R_9258456_SNP [dm3] 2R_13370951_SNP [dm6]	A	G	1.401e^-4	0.846	INTERGENIC
2R	18564798	2R_18564798_SNP [dm3] 2R_22677293_SNP [dm6]	C	T	1.407e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1341598	3L_1341598_SNP [dm3] 3L_1341598_SNP [dm6]	A	G	1.412e^-4	0.846	SYNONYMOUS_CODING CG2199 DOWNSTREAM Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	3968310	3L_3968310_SNP [dm3] 3L_3968310_SNP [dm6]	C	G	1.412e^-4	0.846	INTERGENIC
3L	13021384	3L_13021384_SNP [dm3] 3L_13028284_SNP [dm6]	G	A	1.417e^-4	0.847	UPSTREAM CG17672 DOWNSTREAM CR45172 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14382440	2L_14382440_SNP [dm3] 2L_14382440_SNP [dm6]	T	A	1.426e^-4	0.847	INTERGENIC
2L	16570813	2L_16570813_SNP [dm3] 2L_16570813_SNP [dm6]	T	A	1.429e^-4	0.847	INTRON CG42389
2L	6494366	2L_6494366_SNP [dm3] 2L_6494366_SNP [dm6]	C	A	1.437e^-4	0.847	NON_SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
X	11765938	X_11765938_SNP [dm3] X_11871905_SNP [dm6]	T	A	1.439e^-4	0.847	SYNONYMOUS_CODING CG11802 DOWNSTREAM CG1847	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12985048	2R_12985048_SNP [dm3] 2R_17097543_SNP [dm6]	A	G	1.441e^-4	0.847	SPLICE_SITE_REGION GstS1 UPSTREAM GstS1 INTRON GstS1	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6338317	2L_6338317_SNP [dm3] 2L_6338317_SNP [dm6]	A	T	1.451e^-4	0.85	UTR_5_PRIME Pez UPSTREAM Cpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7151670	2R_7151670_SNP [dm3] 2R_11264165_SNP [dm6]	G	T	1.458e^-4	0.852	UPSTREAM Cpr47Ee INTERGENIC	TF binding site mE1_TFBS_ttk
2R	11439650	2R_11439650_SNP [dm3] 2R_15552145_SNP [dm6]	G	A	1.475e^-4	0.853	INTERGENIC
2R	17643885	2R_17643885_DEL [dm3] 2R_21756380_DEL [dm6]	TT	T	1.477e^-4	0.853	UPSTREAM Grx-1 INTERGENIC
X	15670192	X_15670192_SNP [dm3] X_15776159_SNP [dm6]	T	C	1.477e^-4	0.853	SYNONYMOUS_CODING CG43672	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14076367	3L_14076367_SNP [dm3] 3L_14083267_SNP [dm6]	A	G	1.478e^-4	0.853	UPSTREAM CG8100 DOWNSTREAM btl INTERGENIC
X	18845713	X_18845713_SNP [dm3] X_18951680_SNP [dm6]	G	A	1.487e^-4	0.855	INTRON CG43759
3R	4382728	3R_4382728_SNP [dm3] 3R_8557006_SNP [dm6]	A	G	1.490e^-4	0.855	INTERGENIC
2L	8982341	2L_8982341_SNP [dm3] 2L_8982341_SNP [dm6]	G	T	1.498e^-4	0.856	DOWNSTREAM CG18662 INTRON CG13101
2L	10273425	2L_10273425_SNP [dm3] 2L_10273425_SNP [dm6]	G	C	1.513e^-4	0.859	INTRON Utx
2R	16353801	2R_16353801_SNP [dm3] 2R_20466296_SNP [dm6]	C	G	1.515e^-4	0.859	INTRON CG12484
3R	7888128	3R_7888128_SNP [dm3] 3R_12062406_SNP [dm6]	C	T	1.516e^-4	0.859	SYNONYMOUS_CODING CG14740
3R	17715643	3R_17715643_SNP [dm3] 3R_21889921_SNP [dm6]	C	A	1.538e^-4	0.865	INTRON CG6678 EXON CR43844	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9284457	3L_9284457_SNP [dm3] 3L_9291357_SNP [dm6]	A	T	1.540e^-4	0.865	INTERGENIC
3R	11950846	3R_11950846_SNP [dm3] 3R_16125124_SNP [dm6]	C	T	1.543e^-4	0.865	INTRON Sb
X	5206270	X_5206270_SNP [dm3] X_5312237_SNP [dm6]	T	C	1.552e^-4	0.865	UTR_5_PRIME dhd UPSTREAM dhd & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4431430	2R_4431430_SNP [dm3] 2R_8543925_SNP [dm6]	T	A	1.556e^-4	0.865	UPSTREAM CR44279 INTERGENIC
3L	4578969	3L_4578969_SNP [dm3] 3L_4578969_SNP [dm6]	T	C	1.559e^-4	0.865	INTRON CG42540
2R	18564965	2R_18564965_SNP [dm3] 2R_22677460_SNP [dm6]	T	C	1.560e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12340600	2L_12340600_SNP [dm3] 2L_12340600_SNP [dm6]	G	A	1.579e^-4	0.865	INTERGENIC
3L	18305267	3L_18305267_SNP [dm3] 3L_18312167_SNP [dm6]	C	A	1.582e^-4	0.865	INTERGENIC
3R	20283880	3R_20283880_SNP [dm3] 3R_24458158_SNP [dm6]	C	G	1.587e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	7840946	3L_7840946_DEL [dm3] 3L_7847846_DEL [dm6]	CGCAACCGATAGCTCTC...	C	1.588e^-4	0.865	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19276036	2L_19276036_SNP [dm3] 2L_19276036_SNP [dm6]	T	A	1.591e^-4	0.865	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9722967	3R_9722967_DEL [dm3] 3R_13897245_DEL [dm6]	CCTTTCCCTCAA...	C	1.597e^-4	0.865	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24655785	3R_24655785_SNP [dm3] 3R_28830063_SNP [dm6]	C	G	1.602e^-4	0.865	INTRON WASp
3L	12194225	3L_12194225_SNP [dm3] 3L_12201125_SNP [dm6]	A	C	1.608e^-4	0.865	INTRON Adk1
3L	9512504	3L_9512504_SNP [dm3] 3L_9519404_SNP [dm6]	A	T	1.613e^-4	0.865	INTRON CG33700
2R	18720255	2R_18720255_SNP [dm3] 2R_22832732_SNP [dm6]	T	C	1.618e^-4	0.865	DOWNSTREAM CG30272 INTRON CG30265
2R	17487333	2R_17487333_SNP [dm3] 2R_21599828_SNP [dm6]	G	T	1.618e^-4	0.865	INTERGENIC
3L	10878147	3L_10878147_SNP [dm3] 3L_10885047_SNP [dm6]	T	C	1.620e^-4	0.865	SYNONYMOUS_CODING CG6404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	12873289	3L_12873289_SNP [dm3] 3L_12880189_SNP [dm6]	A	C	1.621e^-4	0.865	INTERGENIC
3R	24304751	3R_24304751_SNP [dm3] 3R_28479029_SNP [dm6]	A	G	1.623e^-4	0.865	INTERGENIC
3L	16135077	3L_16135077_SNP [dm3] 3L_16141977_SNP [dm6]	T	G	1.637e^-4	0.87	INTRON CG5151 & 1 other	TF binding site mE1_TFBS_cad
2L	375595	2L_375595_SNP [dm3] 2L_375595_SNP [dm6]	G	T	1.642e^-4	0.87	INTERGENIC
3L	6224242	3L_6224242_SNP [dm3] 3L_6231142_SNP [dm6]	T	C	1.679e^-4	0.882	DOWNSTREAM CG13299 INTERGENIC
2R	7151693	2R_7151693_SNP [dm3] 2R_11264188_SNP [dm6]	T	C	1.686e^-4	0.882	UPSTREAM Cpr47Ee INTERGENIC	TF binding site mE1_TFBS_ttk
3L	8220627	3L_8220627_SNP [dm3] 3L_8227527_SNP [dm6]	A	C	1.687e^-4	0.882	INTERGENIC
3R	3222193	3R_3222193_SNP [dm3] 3R_7396471_SNP [dm6]	A	T	1.688e^-4	0.882	INTERGENIC
3R	12712598	3R_12712598_SNP [dm3] 3R_16886876_SNP [dm6]	T	A	1.694e^-4	0.882	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	3914024	3L_3914024_SNP [dm3] 3L_3914024_SNP [dm6]	G	T	1.700e^-4	0.882	INTRON Eip63F-1
2L	14457574	2L_14457574_SNP [dm3] 2L_14457574_SNP [dm6]	T	C	1.701e^-4	0.882	DOWNSTREAM CR44730 INTERGENIC
2R	2956460	2R_2956460_SNP [dm3] 2R_7068955_SNP [dm6]	C	T	1.701e^-4	0.882	INTRON CG12836
2L	8027903	2L_8027903_SNP [dm3] 2L_8027903_SNP [dm6]	C	A	1.721e^-4	0.885	NON_SYNONYMOUS_CODING CG7367
3L	5875532	3L_5875532_SNP [dm3] 3L_5882432_SNP [dm6]	C	A	1.724e^-4	0.885	NON_SYNONYMOUS_CODING CG13287	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5513609	2L_5513609_SNP [dm3] 2L_5513609_SNP [dm6]	G	A	1.728e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	11223278	3R_11223278_SNP [dm3] 3R_15397556_SNP [dm6]	G	C	1.730e^-4	0.885	INTRON Rbp	TF binding site BDTNP1_TFBS_dl
3R	21314098	3R_21314098_SNP [dm3] 3R_25488376_SNP [dm6]	C	A	1.732e^-4	0.885	INTRON Dhap-at
3L	4579246	3L_4579246_SNP [dm3] 3L_4579246_SNP [dm6]	A	C	1.736e^-4	0.885	INTRON CG42540
X	8966263	X_8966263_SNP [dm3] X_9072230_SNP [dm6]	T	G	1.745e^-4	0.885	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
2L	10713561	2L_10713561_SNP [dm3] 2L_10713561_SNP [dm6]	T	A	1.745e^-4	0.885	INTERGENIC
3R	12530119	3R_12530119_SNP [dm3] 3R_16704397_SNP [dm6]	G	A	1.756e^-4	0.888	INTRON Ubx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3R	12709601	3R_12709601_SNP [dm3] 3R_16883879_SNP [dm6]	G	A	1.773e^-4	0.889	INTRON iab-8
2L	9518733	2L_9518733_SNP [dm3] 2L_9518733_SNP [dm6]	A	G	1.775e^-4	0.889	SYNONYMOUS_CODING CG33298	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11728411	2R_11728411_SNP [dm3] 2R_15840906_SNP [dm6]	G	C	1.777e^-4	0.889	INTRON tun	regulatory region REDfly_CRMs
3R	23730275	3R_23730275_SNP [dm3] 3R_27904553_SNP [dm6]	A	G	1.787e^-4	0.889	INTRON CG34353
2L	14693000	2L_14693000_SNP [dm3] 2L_14693000_SNP [dm6]	C	G	1.795e^-4	0.889	INTERGENIC
3L	18277539	3L_18277539_SNP [dm3] 3L_18284439_SNP [dm6]	A	T	1.797e^-4	0.889	INTERGENIC
3R	10075132	3R_10075132_SNP [dm3] 3R_14249410_SNP [dm6]	T	C	1.799e^-4	0.889	INTERGENIC
2L	9374660	2L_9374660_SNP [dm3] 2L_9374660_SNP [dm6]	A	G	1.799e^-4	0.889	DOWNSTREAM CR43865 INTRON Shawl
2L	16570806	2L_16570806_SNP [dm3] 2L_16570806_SNP [dm6]	A	C	1.800e^-4	0.889	INTRON CG42389
2L	12176690	2L_12176690_SNP [dm3] 2L_12176690_SNP [dm6]	C	A	1.816e^-4	0.893	INTRON aret & 1 other
3L	10865880	3L_10865880_SNP [dm3] 3L_10872780_SNP [dm6]	A	G	1.818e^-4	0.893	INTRON tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	19306778	2L_19306778_DEL [dm3] 2L_19306778_DEL [dm6]	AA	A	1.824e^-4	0.893	INTERGENIC
3L	1168093	3L_1168093_SNP [dm3] 3L_1168093_SNP [dm6]	T	A	1.833e^-4	0.895	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15059640	3R_15059640_SNP [dm3] 3R_19233918_SNP [dm6]	G	A	1.840e^-4	0.896	SYNONYMOUS_CODING unc79
3R	12196590	3R_12196590_SNP [dm3] 3R_16370868_SNP [dm6]	A	T	1.844e^-4	0.896	UPSTREAM CG10317 DOWNSTREAM CR45193 INTERGENIC
2R	14428238	2R_14428238_DEL [dm3] 2R_18540733_DEL [dm6]	GAGG	T	1.850e^-4	0.896	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
3L	6056220	3L_6056220_SNP [dm3] 3L_6063120_SNP [dm6]	T	C	1.856e^-4	0.896	UPSTREAM CG10472 INTERGENIC
2R	19622931	2R_19622931_INS [dm3] 2R_23735408_INS [dm6]	T	TGTTGTTGCTAGATGTTGAA...	1.859e^-4	0.896	UTR_3_PRIME egl DOWNSTREAM Sesn
2R	20338940	2R_20338940_SNP [dm3] 2R_24451417_SNP [dm6]	G	A	1.876e^-4	0.896	SYNONYMOUS_CODING CG4563	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3762134	3L_3762134_SNP [dm3] 3L_3762134_SNP [dm6]	G	T	1.891e^-4	0.896	INTRON CG32264
3L	6356916	3L_6356916_SNP [dm3] 3L_6363816_SNP [dm6]	A	G	1.892e^-4	0.896	INTERGENIC
3R	15771834	3R_15771834_SNP [dm3] 3R_19946112_SNP [dm6]	C	T	1.892e^-4	0.896	INTRON Hs6st
3L	9055689	3L_9055689_SNP [dm3] 3L_9062589_SNP [dm6]	G	T	1.898e^-4	0.896	INTRON Argk
3R	24656221	3R_24656221_SNP [dm3] 3R_28830499_SNP [dm6]	C	T	1.898e^-4	0.896	SPLICE_SITE_REGION WASp INTRON WASp	TF binding site mE1_TFBS_inv
3R	23277491	3R_23277491_SNP [dm3] 3R_27451769_SNP [dm6]	G	T	1.899e^-4	0.896	INTERGENIC
2R	14506385	2R_14506385_SNP [dm3] 2R_18618880_SNP [dm6]	A	G	1.911e^-4	0.896	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18749621	3R_18749621_SNP [dm3] 3R_22923899_SNP [dm6]	C	A	1.912e^-4	0.896	INTRON klg & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9963796	3R_9963796_SNP [dm3] 3R_14138074_SNP [dm6]	G	C	1.921e^-4	0.896	INTERGENIC
2R	7882413	2R_7882413_SNP [dm3] 2R_11994908_SNP [dm6]	T	C	1.928e^-4	0.896	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319
3R	9762206	3R_9762206_SNP [dm3] 3R_13936484_SNP [dm6]	G	A	1.931e^-4	0.896	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	24467306	3R_24467306_SNP [dm3] 3R_28641584_SNP [dm6]	T	C	1.934e^-4	0.896	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16537366	2L_16537366_SNP [dm3] 2L_16537366_SNP [dm6]	A	T	1.940e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7108280	2R_7108280_SNP [dm3] 2R_11220775_SNP [dm6]	T	G	1.940e^-4	0.896	INTRON Syx6
X	18869359	X_18869359_SNP [dm3] X_18975326_SNP [dm6]	G	T	1.944e^-4	0.896	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17415871	2R_17415871_SNP [dm3] 2R_21528366_SNP [dm6]	C	G	1.951e^-4	0.896	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8899576	2L_8899576_DEL [dm3] 2L_8899576_DEL [dm6]	AA	A	1.952e^-4	0.896	UTR_5_PRIME CG34398 INTRON CG34398
2R	17165186	2R_17165186_SNP [dm3] 2R_21277681_SNP [dm6]	G	A	1.952e^-4	0.896	INTRON Rgk3
3L	5209997	3L_5209997_SNP [dm3] 3L_5216897_SNP [dm6]	A	G	1.955e^-4	0.896	INTRON shep
2R	6100416	2R_6100416_SNP [dm3] 2R_10212911_SNP [dm6]	T	A	1.958e^-4	0.896	INTRON Hr46 & 1 other	TF binding site mE1_TFBS_Trl
2L	11795065	2L_11795065_SNP [dm3] 2L_11795065_SNP [dm6]	T	A	1.966e^-4	0.897	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
X	9144943	X_9144943_SNP [dm3] X_9250910_SNP [dm6]	C	T	1.970e^-4	0.897	SYNONYMOUS_CODING CG17754 DOWNSTREAM Dsor1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13497744	X_13497744_SNP [dm3] X_13603711_SNP [dm6]	C	G	2.004e^-4	0.906	UPSTREAM CR44654 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7754925	3R_7754925_SNP [dm3] 3R_11929203_SNP [dm6]	C	G	2.007e^-4	0.906	INTRON Cad87A
X	3374142	X_3374142_SNP [dm3] X_3480109_SNP [dm6]	C	T	2.016e^-4	0.906	SYNONYMOUS_CODING CG10804 INTRON CR44999	TF binding site mE1_TFBS_cad
2L	19261480	2L_19261480_SNP [dm3] 2L_19261480_SNP [dm6]	T	C	2.026e^-4	0.906	SYNONYMOUS_CODING CG31797 UPSTREAM CR44191	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20522401	2L_20522401_SNP [dm3] 2L_20522401_SNP [dm6]	A	T	2.029e^-4	0.906	INTERGENIC
3L	9961866	3L_9961866_INS [dm3] 3L_9968766_INS [dm6]	G	GG	2.030e^-4	0.906	UTR_5_PRIME Nc UPSTREAM CG6685	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17165183	2R_17165183_SNP [dm3] 2R_21277678_SNP [dm6]	C	G	2.031e^-4	0.906	INTRON Rgk3
2L	8889984	2L_8889984_SNP [dm3] 2L_8889984_SNP [dm6]	G	A	2.031e^-4	0.906	INTERGENIC
3R	8721952	3R_8721952_SNP [dm3] 3R_12896230_SNP [dm6]	A	T	2.035e^-4	0.906	INTERGENIC
X	18842743	X_18842743_SNP [dm3] X_18948710_SNP [dm6]	A	G	2.040e^-4	0.907	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4579250	3L_4579250_SNP [dm3] 3L_4579250_SNP [dm6]	A	T	2.049e^-4	0.908	INTRON CG42540
X	10006684	X_10006684_SNP [dm3] X_10112651_SNP [dm6]	T	C	2.052e^-4	0.908	INTRON RhoU	TF binding site mE1_TFBS_HSA
2R	4371259	2R_4371259_SNP [dm3] 2R_8483754_SNP [dm6]	C	T	2.061e^-4	0.909	UTR_5_PRIME mtt INTRON mtt
2R	6437763	2R_6437763_SNP [dm3] 2R_10550258_SNP [dm6]	G	A	2.070e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	6493368	X_6493368_SNP [dm3] X_6599335_SNP [dm6]	C	T	2.073e^-4	0.911	UTR_3_PRIME APC7 UPSTREAM pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	6320999	2L_6320999_SNP [dm3] 2L_6320999_SNP [dm6]	G	T	2.091e^-4	0.912	INTRON Ddr
2R	19841683	2R_19841683_SNP [dm3] 2R_23954160_SNP [dm6]	T	C	2.103e^-4	0.912	UTR_5_PRIME thoc5 UPSTREAM CG3803	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7330989	2R_7330989_SNP [dm3] 2R_11443484_SNP [dm6]	T	C	2.103e^-4	0.912	INTRON qvr
3R	23237297	3R_23237297_SNP [dm3] 3R_27411575_SNP [dm6]	G	C	2.108e^-4	0.912	INTRON side
2R	15314362	2R_15314362_SNP [dm3] 2R_19426857_SNP [dm6]	T	A	2.113e^-4	0.912	INTRON CalpA
3L	7989755	3L_7989755_SNP [dm3] 3L_7996655_SNP [dm6]	C	A	2.114e^-4	0.912	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	17492444	2R_17492444_SNP [dm3] 2R_21604939_SNP [dm6]	T	C	2.118e^-4	0.912	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC
3R	12715628	3R_12715628_SNP [dm3] 3R_16889906_SNP [dm6]	A	C	2.118e^-4	0.912	INTRON iab-8
3L	4434621	3L_4434621_SNP [dm3] 3L_4434621_SNP [dm6]	G	T	2.120e^-4	0.912	SYNONYMOUS_CODING nAChRbeta1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20050733	2R_20050733_SNP [dm3] 2R_24163210_SNP [dm6]	C	T	2.136e^-4	0.913	INTRON CG3328
2L	7045227	2L_7045227_SNP [dm3] 2L_7045227_SNP [dm6]	C	T	2.140e^-4	0.913	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3347199	2L_3347199_SNP [dm3] 2L_3347199_SNP [dm6]	T	A	2.146e^-4	0.913	INTRON E23
2R	10797543	2R_10797543_DEL [dm3] 2R_14910038_DEL [dm6]	ACTACATT	A	2.155e^-4	0.913	INTRON CG10249	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10797576	2R_10797576_SNP [dm3] 2R_14910071_SNP [dm6]	A	T	2.155e^-4	0.913	INTRON CG10249	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16713531	2R_16713531_SNP [dm3] 2R_20826026_SNP [dm6]	A	T	2.158e^-4	0.913	INTRON insc
2R	12985272	2R_12985272_DEL [dm3] 2R_17097767_DEL [dm6]	TT	T	2.159e^-4	0.913	UPSTREAM GstS1 INTRON GstS1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6224213	3L_6224213_SNP [dm3] 3L_6231113_SNP [dm6]	G	T	2.162e^-4	0.913	DOWNSTREAM CG13299 INTERGENIC
3L	9513387	3L_9513387_SNP [dm3] 3L_9520287_SNP [dm6]	T	C	2.188e^-4	0.915	INTRON CG33700
2L	4936979	2L_4936979_SNP [dm3] 2L_4936979_SNP [dm6]	A	T	2.194e^-4	0.915	UPSTREAM Sgs1 & 1 other INTERGENIC
3L	16796843	3L_16796843_SNP [dm3] 3L_16803743_SNP [dm6]	G	T	2.200e^-4	0.915	INTRON CG9674	TF binding site mE1_TFBS_cad
X	18845688	X_18845688_SNP [dm3] X_18951655_SNP [dm6]	A	T	2.204e^-4	0.915	INTRON CG43759
3L	3755347	3L_3755347_SNP [dm3] 3L_3755347_SNP [dm6]	A	G	2.205e^-4	0.915	UPSTREAM ppk27 INTRON CG32264
2L	19263056	2L_19263056_SNP [dm3] 2L_19263056_SNP [dm6]	A	G	2.206e^-4	0.915	UPSTREAM CG31797 EXON CR44191
3L	6356919	3L_6356919_SNP [dm3] 3L_6363819_SNP [dm6]	T	C	2.207e^-4	0.915	INTERGENIC
2R	17290556	2R_17290556_SNP [dm3] 2R_21403051_SNP [dm6]	C	G	2.209e^-4	0.915	INTRON Sdc
2R	16713492	2R_16713492_SNP [dm3] 2R_20825987_SNP [dm6]	C	G	2.210e^-4	0.915	INTRON insc	TF binding site mE1_TFBS_cad
2L	2249610	2L_2249610_SNP [dm3] 2L_2249610_SNP [dm6]	C	T	2.235e^-4	0.918	DOWNSTREAM Ser12 INTERGENIC
2L	14515810	2L_14515810_DEL [dm3] 2L_14515810_DEL [dm6]	CCTT	C	2.241e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19304162	3R_19304162_SNP [dm3] 3R_23478440_SNP [dm6]	C	T	2.246e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1470942	2L_1470942_SNP [dm3] 2L_1470942_SNP [dm6]	T	C	2.251e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4739112	3L_4739112_SNP [dm3] 3L_4739112_SNP [dm6]	G	A	2.256e^-4	0.918	INTRON RhoGEF64C
2L	6276391	2L_6276391_SNP [dm3] 2L_6276391_SNP [dm6]	T	C	2.261e^-4	0.918	INTRON Ddr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13715811	X_13715811_SNP [dm3] X_13821778_SNP [dm6]	G	C	2.265e^-4	0.918	INTRON Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7594665	2L_7594665_INS [dm3] 2L_7594665_INS [dm6]	A	AG	2.277e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20168440	2R_20168440_DEL [dm3] 2R_24280917_DEL [dm6]	GT	G	2.286e^-4	0.918	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9513420	3L_9513420_SNP [dm3] 3L_9520320_SNP [dm6]	A	T	2.289e^-4	0.918	INTRON CG33700
3R	12844645	3R_12844645_SNP [dm3] 3R_17018923_SNP [dm6]	G	C	2.296e^-4	0.918	UTR_3_PRIME AdSL INTRON Pxd
3R	8768657	3R_8768657_SNP [dm3] 3R_12942935_SNP [dm6]	T	G	2.296e^-4	0.918	INTERGENIC
3L	3755595	3L_3755595_SNP [dm3] 3L_3755595_SNP [dm6]	T	C	2.299e^-4	0.918	UPSTREAM ppk27 INTRON CG32264
3R	26700589	3R_26700589_SNP [dm3] 3R_30874867_SNP [dm6]	G	A	2.317e^-4	0.918	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
3R	9736324	3R_9736324_INS [dm3] 3R_13910602_INS [dm6]	A	AA	2.319e^-4	0.918	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19736664	3R_19736664_SNP [dm3] 3R_23910942_SNP [dm6]	C	T	2.320e^-4	0.918	INTRON sba
3L	10877819	3L_10877819_INS [dm3] 3L_10884719_INS [dm6]	G	GACAG	2.340e^-4	0.918	INTRON CG6404	TF binding site mE1_TFBS_sens
3L	12850952	3L_12850952_SNP [dm3] 3L_12857852_SNP [dm6]	T	C	2.344e^-4	0.918	UTR_3_PRIME CG32107 DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
2L	12289661	2L_12289661_SNP [dm3] 2L_12289661_SNP [dm6]	G	T	2.346e^-4	0.918	INTRON aret
3L	15780561	3L_15780561_SNP [dm3] 3L_15787461_SNP [dm6]	G	C	2.351e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	1915632	3L_1915632_SNP [dm3] 3L_1915632_SNP [dm6]	G	C	2.352e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	5939453	3L_5939453_DEL [dm3] 3L_5946353_DEL [dm6]	GG	G	2.360e^-4	0.918	INTRON CG33993	TF binding site BDTNP1_TFBS_twi
2L	9443502	2L_9443502_SNP [dm3] 2L_9443502_SNP [dm6]	G	A	2.363e^-4	0.918	INTRON numb
2R	7566259	2R_7566259_SNP [dm3] 2R_11678754_SNP [dm6]	T	A	2.365e^-4	0.918	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	9159135	3R_9159135_SNP [dm3] 3R_13333413_SNP [dm6]	T	C	2.368e^-4	0.918	INTRON PK2-R2
3L	10877796	3L_10877796_SNP [dm3] 3L_10884696_SNP [dm6]	G	T	2.380e^-4	0.918	INTRON CG6404	TF binding site mE1_TFBS_sens
X	14917287	X_14917287_SNP [dm3] X_15023254_SNP [dm6]	C	A	2.384e^-4	0.918	INTRON hiw	transposable element FlyBase
2R	4916281	2R_4916281_SNP [dm3] 2R_9028776_SNP [dm6]	A	T	2.394e^-4	0.918	INTRON CG8170
2L	8027900	2L_8027900_SNP [dm3] 2L_8027900_SNP [dm6]	A	G	2.398e^-4	0.918	SYNONYMOUS_CODING CG7367
3R	24656158	3R_24656158_SNP [dm3] 3R_28830436_SNP [dm6]	C	G	2.406e^-4	0.918	INTRON WASp
2L	2612989	2L_2612989_SNP [dm3] 2L_2612989_SNP [dm6]	G	A	2.409e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12082449	3R_12082449_SNP [dm3] 3R_16256727_SNP [dm6]	A	T	2.415e^-4	0.918	INTRON tara	TF binding site mE1_TFBS_cad mE1_TFBS_eve
3L	6356908	3L_6356908_SNP [dm3] 3L_6363808_SNP [dm6]	A	T	2.435e^-4	0.918	INTERGENIC
2R	9258445	2R_9258445_SNP [dm3] 2R_13370940_SNP [dm6]	C	T	2.435e^-4	0.918	INTERGENIC
3L	6224867	3L_6224867_SNP [dm3] 3L_6231767_SNP [dm6]	A	G	2.439e^-4	0.918	DOWNSTREAM CG13299 & 1 other INTERGENIC
X	18845652	X_18845652_SNP [dm3] X_18951619_SNP [dm6]	T	A	2.441e^-4	0.918	INTRON CG43759
2L	10095757	2L_10095757_SNP [dm3] 2L_10095757_SNP [dm6]	C	A	2.441e^-4	0.918	INTRON CG44153 & 1 other
3L	4579330	3L_4579330_SNP [dm3] 3L_4579330_SNP [dm6]	A	T	2.448e^-4	0.918	INTRON CG42540
3L	3756376	3L_3756376_SNP [dm3] 3L_3756376_SNP [dm6]	A	T	2.448e^-4	0.918	INTRON CG32264	TF binding site mE1_TFBS_Trl
3R	24304775	3R_24304775_SNP [dm3] 3R_28479053_SNP [dm6]	A	G	2.457e^-4	0.918	INTERGENIC
3R	9736204	3R_9736204_INS [dm3] 3R_13910482_INS [dm6]	G	GG	2.457e^-4	0.918	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12338977	2L_12338977_SNP [dm3] 2L_12338977_SNP [dm6]	T	C	2.458e^-4	0.918	SYNONYMOUS_CODING CG31862
3L	6056280	3L_6056280_SNP [dm3] 3L_6063180_SNP [dm6]	T	A	2.458e^-4	0.918	UPSTREAM CG10472 INTERGENIC
X	16893613	X_16893613_SNP [dm3] X_16999580_SNP [dm6]	C	T	2.459e^-4	0.918	INTRON CG45002
2L	11172123	2L_11172123_SNP [dm3] 2L_11172123_SNP [dm6]	G	C	2.462e^-4	0.918	UPSTREAM Vm32E INTRON Ca-beta	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
3L	19336594	3L_19336594_SNP [dm3] 3L_19343494_SNP [dm6]	G	A	2.463e^-4	0.918	NON_SYNONYMOUS_CODING CG32206
3R	13934460	3R_13934460_SNP [dm3] 3R_18108738_SNP [dm6]	A	T	2.466e^-4	0.918	UPSTREAM tRNA:CR31518 DOWNSTREAM tRNA:CR31242 INTRON sr	TF binding site BDTNP1_TFBS_dl
2L	14002813	2L_14002813_SNP [dm3] 2L_14002813_SNP [dm6]	C	T	2.468e^-4	0.918	INTERGENIC
2L	6336079	2L_6336079_SNP [dm3] 2L_6336079_SNP [dm6]	G	A	2.474e^-4	0.918	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6393429	3R_6393429_SNP [dm3] 3R_10567707_SNP [dm6]	G	C	2.479e^-4	0.918	INTRON hth
2L	19306774	2L_19306774_SNP [dm3] 2L_19306774_SNP [dm6]	G	A	2.480e^-4	0.918	INTERGENIC
3L	10877812	3L_10877812_SNP [dm3] 3L_10884712_SNP [dm6]	C	T	2.484e^-4	0.918	INTRON CG6404	TF binding site mE1_TFBS_sens
3R	25052741	3R_25052741_SNP [dm3] 3R_29227019_SNP [dm6]	T	G	2.489e^-4	0.918	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7566171	2R_7566171_SNP [dm3] 2R_11678666_SNP [dm6]	C	G	2.509e^-4	0.918	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_bab1
3L	1847812	3L_1847812_SNP [dm3] 3L_1847812_SNP [dm6]	C	G	2.510e^-4	0.918	INTERGENIC
2R	10797571	2R_10797571_SNP [dm3] 2R_14910066_SNP [dm6]	A	T	2.540e^-4	0.918	INTRON CG10249	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10797573	2R_10797573_SNP [dm3] 2R_14910068_SNP [dm6]	A	G	2.540e^-4	0.918	INTRON CG10249	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19629642	3L_19629642_DEL [dm3] 3L_19636542_DEL [dm6]	CTTAAATGCAATTC...	C	2.542e^-4	0.918	UPSTREAM wnd DOWNSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	10892712	2R_10892712_SNP [dm3] 2R_15005207_SNP [dm6]	T	C	2.543e^-4	0.918	INTERGENIC
2L	7270445	2L_7270445_SNP [dm3] 2L_7270445_SNP [dm6]	T	C	2.549e^-4	0.918	INTRON Wnt4
3L	8687333	3L_8687333_SNP [dm3] 3L_8694233_SNP [dm6]	T	C	2.564e^-4	0.918	INTERGENIC
2R	801096	2R_801096_SNP [dm3] 2R_4913591_SNP [dm6]	C	G	2.577e^-4	0.918	INTERGENIC	transposable element FlyBase
2R	14229772	2R_14229772_SNP [dm3] 2R_18342267_SNP [dm6]	A	C	2.582e^-4	0.918	INTRON sbb	TF binding site BDTNP1_TFBS_da
3R	9247024	3R_9247024_SNP [dm3] 3R_13421302_SNP [dm6]	C	A	2.582e^-4	0.918	INTRON Ir87a
3R	7716341	3R_7716341_SNP [dm3] 3R_11890619_SNP [dm6]	G	A	2.590e^-4	0.918	NON_SYNONYMOUS_CODING CG31368
2R	17165182	2R_17165182_SNP [dm3] 2R_21277677_SNP [dm6]	C	A	2.601e^-4	0.918	INTRON Rgk3
3L	19631294	3L_19631294_SNP [dm3] 3L_19638194_SNP [dm6]	C	G	2.611e^-4	0.918	UTR_3_PRIME CG8786
3L	9511642	3L_9511642_SNP [dm3] 3L_9518542_SNP [dm6]	T	C	2.622e^-4	0.918	INTRON CG33700
3R	21031933	3R_21031933_DEL [dm3] 3R_25206211_DEL [dm6]	TT	T	2.631e^-4	0.918	INTRON CG13654 & 1 other
3R	18525930	3R_18525930_SNP [dm3] 3R_22700208_SNP [dm6]	A	G	2.638e^-4	0.918	UTR_3_PRIME Cyp6d4 DOWNSTREAM CCAP
3R	8590119	3R_8590119_SNP [dm3] 3R_12764397_SNP [dm6]	A	C	2.647e^-4	0.918	INTRON beat-Vc
3R	23254134	3R_23254134_SNP [dm3] 3R_27428412_SNP [dm6]	T	A	2.652e^-4	0.918	INTRON side
2L	8895075	2L_8895075_SNP [dm3] 2L_8895075_SNP [dm6]	A	T	2.658e^-4	0.918	INTERGENIC
2R	18562396	2R_18562396_SNP [dm3] 2R_22674891_SNP [dm6]	G	A	2.658e^-4	0.918	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	6337789	2L_6337789_SNP [dm3] 2L_6337789_SNP [dm6]	A	G	2.664e^-4	0.918	INTRON Pez	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18847965	X_18847965_SNP [dm3] X_18953932_SNP [dm6]	C	T	2.665e^-4	0.918	INTRON CG43759
2R	17142359	2R_17142359_SNP [dm3] 2R_21254854_SNP [dm6]	A	T	2.670e^-4	0.918	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	6224395	3L_6224395_SNP [dm3] 3L_6231295_SNP [dm6]	T	G	2.674e^-4	0.918	DOWNSTREAM CG13299 INTERGENIC
3R	18574866	3R_18574866_SNP [dm3] 3R_22749144_SNP [dm6]	C	A	2.698e^-4	0.918	UTR_3_PRIME rumi UPSTREAM CG31139
2R	15314426	2R_15314426_SNP [dm3] 2R_19426921_SNP [dm6]	T	C	2.699e^-4	0.918	SYNONYMOUS_CODING CalpA
3L	19402862	3L_19402862_SNP [dm3] 3L_19409762_SNP [dm6]	G	A	2.704e^-4	0.918	INTRON CG32206
2R	17173895	2R_17173895_SNP [dm3] 2R_21286390_SNP [dm6]	G	A	2.705e^-4	0.918	SYNONYMOUS_CODING CG10505 DOWNSTREAM MFS16
3R	17705753	3R_17705753_SNP [dm3] 3R_21880031_SNP [dm6]	G	T	2.705e^-4	0.918	SYNONYMOUS_CODING P5CDh2 UPSTREAM CG31465 EXON CR45046
2R	10009948	2R_10009948_SNP [dm3] 2R_14122443_SNP [dm6]	T	C	2.708e^-4	0.918	INTRON Prosap
2L	8798398	2L_8798398_SNP [dm3] 2L_8798398_SNP [dm6]	C	G	2.710e^-4	0.918	INTERGENIC
2L	2951615	2L_2951615_SNP [dm3] 2L_2951615_SNP [dm6]	A	T	2.712e^-4	0.918	INTRON lilli	TF binding site mE1_TFBS_cad
2R	8325117	2R_8325117_DEL [dm3] 2R_12437612_DEL [dm6]	AA	A	2.713e^-4	0.918	UTR_5_PRIME Dyb DOWNSTREAM CG30051 INTRON Dyb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8979716	2L_8979716_SNP [dm3] 2L_8979716_SNP [dm6]	A	C	2.713e^-4	0.918	UPSTREAM CG18662 INTRON CG13101
2R	3017318	2R_3017318_SNP [dm3] 2R_7129813_SNP [dm6]	A	T	2.713e^-4	0.918	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2R	3017426	2R_3017426_SNP [dm3] 2R_7129921_SNP [dm6]	T	C	2.713e^-4	0.918	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
3L	19352893	3L_19352893_SNP [dm3] 3L_19359793_SNP [dm6]	G	A	2.715e^-4	0.918	INTRON CG32206
2L	6706359	2L_6706359_SNP [dm3] 2L_6706359_SNP [dm6]	G	A	2.717e^-4	0.918	INTRON Tsp
2L	12340573	2L_12340573_SNP [dm3] 2L_12340573_SNP [dm6]	T	C	2.721e^-4	0.918	INTERGENIC
3L	15780607	3L_15780607_SNP [dm3] 3L_15787507_SNP [dm6]	T	A	2.723e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr
2R	7108299	2R_7108299_SNP [dm3] 2R_11220794_SNP [dm6]	C	T	2.724e^-4	0.918	INTRON Syx6
2R	18564934	2R_18564934_SNP [dm3] 2R_22677429_SNP [dm6]	C	T	2.729e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9244966	3R_9244966_SNP [dm3] 3R_13419244_SNP [dm6]	A	T	2.741e^-4	0.918	INTERGENIC
2R	14506287	2R_14506287_INS [dm3] 2R_18618782_INS [dm6]	C	CC	2.741e^-4	0.918	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	6338496	2L_6338496_SNP [dm3] 2L_6338496_SNP [dm6]	G	C	2.743e^-4	0.918	SPLICE_SITE_REGION Pez UPSTREAM Cpr & 1 other INTRON Pez	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12036013	3L_12036013_SNP [dm3] 3L_12042913_SNP [dm6]	G	A	2.746e^-4	0.918	SYNONYMOUS_CODING CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19257917	2L_19257917_SNP [dm3] 2L_19257917_SNP [dm6]	A	C	2.750e^-4	0.918	INTERGENIC
3L	9377211	3L_9377211_SNP [dm3] 3L_9384111_SNP [dm6]	C	T	2.753e^-4	0.918	UTR_5_PRIME Hsp27	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	23929824	3R_23929824_SNP [dm3] 3R_28104102_SNP [dm6]	T	C	2.755e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	17169460	2R_17169460_SNP [dm3] 2R_21281955_SNP [dm6]	C	T	2.755e^-4	0.918	UPSTREAM MFS16 & 1 other DOWNSTREAM Rgk3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7566262	2R_7566262_SNP [dm3] 2R_11678757_SNP [dm6]	G	A	2.759e^-4	0.918	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	12256674	3L_12256674_SNP [dm3] 3L_12263574_SNP [dm6]	A	C	2.766e^-4	0.918	INTRON app
3R	9722980	3R_9722980_SNP [dm3] 3R_13897258_SNP [dm6]	T	A	2.770e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18564924	2R_18564924_SNP [dm3] 2R_22677419_SNP [dm6]	C	T	2.774e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16061608	2L_16061608_SNP [dm3] 2L_16061608_SNP [dm6]	C	T	2.777e^-4	0.918	INTRON beat-Ia
2R	17523299	2R_17523299_SNP [dm3] 2R_21635794_SNP [dm6]	A	C	2.793e^-4	0.918	NON_SYNONYMOUS_CODING CG10321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	6176401	3L_6176401_SNP [dm3] 3L_6183301_SNP [dm6]	T	G	2.795e^-4	0.918	SYNONYMOUS_CODING D19B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8983480	2L_8983480_SNP [dm3] 2L_8983480_SNP [dm6]	T	A	2.796e^-4	0.918	INTRON CG13101
3L	1533743	3L_1533743_SNP [dm3] 3L_1533743_SNP [dm6]	T	C	2.799e^-4	0.918	SYNONYMOUS_CODING CG12090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7566168	2R_7566168_SNP [dm3] 2R_11678663_SNP [dm6]	A	G	2.800e^-4	0.918	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_bab1
3R	24304782	3R_24304782_SNP [dm3] 3R_28479060_SNP [dm6]	A	G	2.801e^-4	0.918	INTERGENIC
3R	7804506	3R_7804506_SNP [dm3] 3R_11978784_SNP [dm6]	G	T	2.805e^-4	0.918	UPSTREAM CR44135 INTRON CG18547	TF binding site mE1_TFBS_cad
2L	19307734	2L_19307734_SNP [dm3] 2L_19307734_SNP [dm6]	A	T	2.813e^-4	0.918	INTERGENIC
X	11765971	X_11765971_SNP [dm3] X_11871938_SNP [dm6]	T	C	2.814e^-4	0.918	SYNONYMOUS_CODING CG11802 DOWNSTREAM CG1847	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19302099	3R_19302099_SNP [dm3] 3R_23476377_SNP [dm6]	C	G	2.816e^-4	0.918	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12126819	2R_12126819_SNP [dm3] 2R_16239314_SNP [dm6]	A	G	2.822e^-4	0.918	SYNONYMOUS_CODING krimp	TF binding site mE1_TFBS_HSA
2R	7566266	2R_7566266_SNP [dm3] 2R_11678761_SNP [dm6]	T	A	2.829e^-4	0.918	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	1686271	3L_1686271_SNP [dm3] 3L_1686271_SNP [dm6]	T	G	2.830e^-4	0.918	INTRON CG7991
3L	8808918	3L_8808918_INS [dm3] 3L_8815818_INS [dm6]	T	ATGCCAC	2.840e^-4	0.918	INTERGENIC
2L	3296724	2L_3296724_SNP [dm3] 2L_3296724_SNP [dm6]	C	A	2.841e^-4	0.918	INTRON CG9663
3L	6182561	3L_6182561_SNP [dm3] 3L_6189461_SNP [dm6]	T	A	2.851e^-4	0.918	UPSTREAM CG7386 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3L	8236995	3L_8236995_SNP [dm3] 3L_8243895_SNP [dm6]	T	G	2.853e^-4	0.918	INTRON Dscam4
3L	8566276	3L_8566276_SNP [dm3] 3L_8573176_SNP [dm6]	A	T	2.862e^-4	0.918	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea INTRON rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5508331	2L_5508331_SNP [dm3] 2L_5508331_SNP [dm6]	C	G	2.863e^-4	0.918	INTERGENIC
3R	9822443	3R_9822443_SNP [dm3] 3R_13996721_SNP [dm6]	C	A	2.864e^-4	0.918	INTRON rdx
3L	20797221	3L_20797221_SNP [dm3] 3L_20804121_SNP [dm6]	T	A	2.865e^-4	0.918	NON_SYNONYMOUS_CODING Spc105R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19219755	3L_19219755_SNP [dm3] 3L_19226655_SNP [dm6]	G	T	2.868e^-4	0.918	INTRON fz2
2L	8983114	2L_8983114_SNP [dm3] 2L_8983114_SNP [dm6]	A	T	2.869e^-4	0.918	INTRON CG13101
2R	19797572	2R_19797572_SNP [dm3] 2R_23910049_SNP [dm6]	C	A	2.872e^-4	0.918	UPSTREAM kcc INTRON kcc
3R	11223273	3R_11223273_INS [dm3] 3R_15397551_INS [dm6]	A	ATATATTA	2.880e^-4	0.918	INTRON Rbp	TF binding site BDTNP1_TFBS_dl
3R	12239466	3R_12239466_SNP [dm3] 3R_16413744_SNP [dm6]	G	A	2.882e^-4	0.918	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2R	14114098	2R_14114098_INS [dm3] 2R_18226593_INS [dm6]	G	GCC	2.886e^-4	0.918	UPSTREAM CR45310 DOWNSTREAM CR45311 INTERGENIC
X	1054740	X_1054740_SNP [dm3] X_1160707_SNP [dm6]	T	A	2.892e^-4	0.918	INTRON eIF4E-7
2R	10797519	2R_10797519_DEL [dm3] 2R_14910014_DEL [dm6]	ATTTGTCTAACA...	A	2.893e^-4	0.918	INTRON CG10249	TF binding site BDTNP1_TFBS_twi
3L	9253494	3L_9253494_SNP [dm3] 3L_9260394_SNP [dm6]	G	A	2.899e^-4	0.918	INTRON GluRIB
3L	8743968	3L_8743968_DEL [dm3] 3L_8750868_DEL [dm6]	CA	C	2.905e^-4	0.918	DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7643686	2L_7643686_SNP [dm3] 2L_7643686_SNP [dm6]	A	G	2.919e^-4	0.918	SYNONYMOUS_CODING Slob UTR_3_PRIME Slob
2L	592341	2L_592341_SNP [dm3] 2L_592341_SNP [dm6]	T	G	2.925e^-4	0.918	SYNONYMOUS_CODING Gsc
3L	9879354	3L_9879354_SNP [dm3] 3L_9886254_SNP [dm6]	C	T	2.930e^-4	0.918	SYNONYMOUS_CODING Taf2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9512513	3L_9512513_SNP [dm3] 3L_9519413_SNP [dm6]	C	G	2.938e^-4	0.918	INTRON CG33700
2L	1264987	2L_1264987_SNP [dm3] 2L_1264987_SNP [dm6]	T	C	2.942e^-4	0.918	INTRON robo3
3L	3914019	3L_3914019_SNP [dm3] 3L_3914019_SNP [dm6]	A	C	2.945e^-4	0.918	INTRON Eip63F-1
3R	18898068	3R_18898068_SNP [dm3] 3R_23072346_SNP [dm6]	G	T	2.945e^-4	0.918	UTR_3_PRIME CG13830 DOWNSTREAM CG13830
2R	18751497	2R_18751497_INS [dm3] 2R_22863974_INS [dm6]	G	GGGAGGG	2.946e^-4	0.918	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	9245018	3R_9245018_SNP [dm3] 3R_13419296_SNP [dm6]	T	C	2.952e^-4	0.918	UPSTREAM Ir87a INTERGENIC
3R	22876886	3R_22876886_DEL [dm3] 3R_27051164_DEL [dm6]	TTC	CA	2.955e^-4	0.918	DOWNSTREAM TwdlT INTRON RYa-R
X	8666735	X_8666735_SNP [dm3] X_8772702_SNP [dm6]	C	T	2.957e^-4	0.918	INTRON Lim1
2R	20343667	2R_20343667_SNP [dm3] 2R_24456144_SNP [dm6]	G	A	2.965e^-4	0.918	INTRON CG13579
2L	19192612	2L_19192612_SNP [dm3] 2L_19192612_SNP [dm6]	G	A	2.966e^-4	0.918	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19306782	2L_19306782_SNP [dm3] 2L_19306782_SNP [dm6]	G	T	2.973e^-4	0.919	INTERGENIC
2L	6336910	2L_6336910_SNP [dm3] 2L_6336910_SNP [dm6]	G	T	2.979e^-4	0.919	SYNONYMOUS_CODING Pez	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6048834	3R_6048834_SNP [dm3] 3R_10223112_SNP [dm6]	A	T	2.990e^-4	0.92	SPLICE_SITE_REGION CG12420 DOWNSTREAM CG12817 & 1 other INTRON CG12420	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15569580	2L_15569580_SNP [dm3] 2L_15569580_SNP [dm6]	T	A	2.994e^-4	0.92	INTRON kek3
3L	4692002	3L_4692002_SNP [dm3] 3L_4692002_SNP [dm6]	T	A	3.002e^-4	0.922	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
2L	4818463	2L_4818463_SNP [dm3] 2L_4818463_SNP [dm6]	C	G	3.014e^-4	0.924	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3797410	2L_3797410_SNP [dm3] 2L_3797410_SNP [dm6]	G	A	3.038e^-4	0.926	SYNONYMOUS_CODING CG3921
3R	24304770	3R_24304770_SNP [dm3] 3R_28479048_SNP [dm6]	T	C	3.039e^-4	0.926	INTERGENIC
2L	6501703	2L_6501703_SNP [dm3] 2L_6501703_SNP [dm6]	G	A	3.050e^-4	0.926	INTRON CG31637	TF binding site mE1_TFBS_sens
2R	17165968	2R_17165968_SNP [dm3] 2R_21278463_SNP [dm6]	G	A	3.051e^-4	0.926	SYNONYMOUS_CODING Rgk3
2R	12983849	2R_12983849_SNP [dm3] 2R_17096344_SNP [dm6]	C	G	3.053e^-4	0.926	INTRON GstS1
2L	1631289	2L_1631289_SNP [dm3] 2L_1631289_SNP [dm6]	T	C	3.057e^-4	0.926	INTERGENIC
3R	19547448	3R_19547448_SNP [dm3] 3R_23721726_SNP [dm6]	T	A	3.057e^-4	0.926	UPSTREAM CG10232 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	18842037	X_18842037_SNP [dm3] X_18948004_SNP [dm6]	A	G	3.071e^-4	0.928	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	11288538	2R_11288538_SNP [dm3] 2R_15401033_SNP [dm6]	G	A	3.078e^-4	0.928	UPSTREAM CG43729 INTERGENIC
3R	18606975	3R_18606975_SNP [dm3] 3R_22781253_SNP [dm6]	C	A	3.079e^-4	0.928	UPSTREAM CG7029 INTRON CG7029 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	537760	2L_537760_INS [dm3] 2L_537760_INS [dm6]	A	ATA	3.083e^-4	0.928	INTRON ush	TF binding site mE1_TFBS_cad
3R	24305672	3R_24305672_SNP [dm3] 3R_28479950_SNP [dm6]	C	T	3.089e^-4	0.928	INTERGENIC
3R	26700455	3R_26700455_SNP [dm3] 3R_30874733_SNP [dm6]	G	T	3.096e^-4	0.928	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
3L	10876673	3L_10876673_SNP [dm3] 3L_10883573_SNP [dm6]	C	A	3.097e^-4	0.928	UTR_3_PRIME CG7949 DOWNSTREAM CG6404
3R	7718083	3R_7718083_SNP [dm3] 3R_11892361_SNP [dm6]	C	T	3.101e^-4	0.928	UTR_3_PRIME CG31368 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2737295	3L_2737295_SNP [dm3] 3L_2737295_SNP [dm6]	C	A	3.110e^-4	0.929	INTRON Mrtf
3R	24304702	3R_24304702_SNP [dm3] 3R_28478980_SNP [dm6]	T	C	3.145e^-4	0.929	INTERGENIC
2R	18971700	2R_18971700_SNP [dm3] 2R_23084177_SNP [dm6]	A	G	3.146e^-4	0.929	DOWNSTREAM Gr59b INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	6334887	2L_6334887_SNP [dm3] 2L_6334887_SNP [dm6]	T	G	3.147e^-4	0.929	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2804426	2L_2804426_INS [dm3] 2L_2804426_INS [dm6]	G	TA	3.154e^-4	0.929	UPSTREAM daw INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18852061	3L_18852061_SNP [dm3] 3L_18858961_SNP [dm6]	G	A	3.156e^-4	0.929	INTERGENIC
2L	6337854	2L_6337854_SNP [dm3] 2L_6337854_SNP [dm6]	G	A	3.157e^-4	0.929	UPSTREAM Cpr INTRON Pez	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19026500	2R_19026500_SNP [dm3] 2R_23138977_SNP [dm6]	C	T	3.160e^-4	0.929	DOWNSTREAM CG13544 INTRON CG30192
2R	18564952	2R_18564952_INS [dm3] 2R_22677447_INS [dm6]	A	ACTTAGA	3.163e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12020484	2L_12020484_SNP [dm3] 2L_12020484_SNP [dm6]	C	A	3.164e^-4	0.929	SYNONYMOUS_CODING CG6734	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12176469	2R_12176469_SNP [dm3] 2R_16288964_SNP [dm6]	C	T	3.169e^-4	0.929	UTR_5_PRIME CG30099 UPSTREAM CG30324 & 1 other INTRON CR43730	TF binding site mE1_TFBS_cad
2L	11866286	2L_11866286_SNP [dm3] 2L_11866286_SNP [dm6]	T	A	3.175e^-4	0.929	INTRON Pde1c
2L	7665593	2L_7665593_SNP [dm3] 2L_7665593_SNP [dm6]	G	A	3.180e^-4	0.929	UPSTREAM Myo28B1 INTRON Slob
2R	16330933	2R_16330933_INS [dm3] 2R_20443428_INS [dm6]	T	CATA	3.180e^-4	0.929	INTRON CG12484	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17573888	X_17573888_SNP [dm3] X_17679855_SNP [dm6]	G	A	3.181e^-4	0.929	INTRON chas
X	16897029	X_16897029_SNP [dm3] X_17002996_SNP [dm6]	T	C	3.195e^-4	0.931	INTRON CG45002
3L	6356987	3L_6356987_SNP [dm3] 3L_6363887_SNP [dm6]	T	A	3.201e^-4	0.931	INTERGENIC
2L	8979581	2L_8979581_SNP [dm3] 2L_8979581_SNP [dm6]	T	C	3.202e^-4	0.931	INTRON CG13101
3L	9901609	3L_9901609_SNP [dm3] 3L_9908509_SNP [dm6]	C	T	3.206e^-4	0.931	INTRON CG34356
3R	9360538	3R_9360538_SNP [dm3] 3R_13534816_SNP [dm6]	T	C	3.220e^-4	0.933	INTERGENIC
3L	3872021	3L_3872021_SNP [dm3] 3L_3872021_SNP [dm6]	T	C	3.232e^-4	0.935	INTERGENIC
2R	20163755	2R_20163755_SNP [dm3] 2R_24276232_SNP [dm6]	T	A	3.247e^-4	0.935	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23212193	3R_23212193_SNP [dm3] 3R_27386471_SNP [dm6]	G	A	3.264e^-4	0.935	INTRON side
2L	6501623	2L_6501623_SNP [dm3] 2L_6501623_SNP [dm6]	G	A	3.268e^-4	0.935	INTRON CG31637	TF binding site mE1_TFBS_sens
2R	17142353	2R_17142353_SNP [dm3] 2R_21254848_SNP [dm6]	A	G	3.270e^-4	0.935	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3L	3755394	3L_3755394_SNP [dm3] 3L_3755394_SNP [dm6]	C	T	3.272e^-4	0.935	UPSTREAM ppk27 INTRON CG32264
3R	9244931	3R_9244931_SNP [dm3] 3R_13419209_SNP [dm6]	G	C	3.276e^-4	0.935	INTERGENIC
2R	14422008	2R_14422008_SNP [dm3] 2R_18534503_SNP [dm6]	G	C	3.277e^-4	0.935	NON_SYNONYMOUS_CODING CG10924	TF binding site mE1_TFBS_chinmo
2R	19031734	2R_19031734_SNP [dm3] 2R_23144211_SNP [dm6]	G	C	3.280e^-4	0.935	SYNONYMOUS_CODING Klp59D	TF binding site mE1_TFBS_cad
3L	2740833	3L_2740833_SNP [dm3] 3L_2740833_SNP [dm6]	G	C	3.288e^-4	0.935	DOWNSTREAM Acp62F INTRON Mrtf
3L	14062486	3L_14062486_SNP [dm3] 3L_14069386_SNP [dm6]	C	T	3.290e^-4	0.935	UTR_3_PRIME CG32138 INTRON CG32138
2L	6808263	2L_6808263_SNP [dm3] 2L_6808263_SNP [dm6]	A	C	3.301e^-4	0.935	INTERGENIC
2L	13768909	2L_13768909_INS [dm3] 2L_13768909_INS [dm6]	C	CATCC	3.308e^-4	0.935	INTRON TM9SF4
X	15278629	X_15278629_SNP [dm3] X_15384596_SNP [dm6]	C	G	3.316e^-4	0.935	UTR_5_PRIME CG9164 UPSTREAM CG9164 INTRON CG9164
2L	5698967	2L_5698967_SNP [dm3] 2L_5698967_SNP [dm6]	A	G	3.323e^-4	0.935	INTERGENIC
3R	9292622	3R_9292622_SNP [dm3] 3R_13466900_SNP [dm6]	C	T	3.327e^-4	0.935	UPSTREAM CR17025 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12340595	2L_12340595_INS [dm3] 2L_12340595_INS [dm6]	G	GGCTA	3.332e^-4	0.935	INTERGENIC
2L	12340579	2L_12340579_INS [dm3] 2L_12340579_INS [dm6]	A	ATG	3.333e^-4	0.935	INTERGENIC
X	4641276	X_4641276_SNP [dm3] X_4747243_SNP [dm6]	C	A	3.336e^-4	0.935	INTERGENIC
3L	6224396	3L_6224396_SNP [dm3] 3L_6231296_SNP [dm6]	T	G	3.341e^-4	0.935	DOWNSTREAM CG13299 INTERGENIC
X	6534203	X_6534203_SNP [dm3] X_6640170_SNP [dm6]	C	T	3.359e^-4	0.935	INTRON pigs
2L	2457597	2L_2457597_SNP [dm3] 2L_2457597_SNP [dm6]	T	C	3.368e^-4	0.935	INTRON dpp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10881486	3L_10881486_SNP [dm3] 3L_10888386_SNP [dm6]	G	C	3.370e^-4	0.935	INTERGENIC
2R	14224009	2R_14224009_SNP [dm3] 2R_18336504_SNP [dm6]	T	A	3.372e^-4	0.935	INTRON sbb
2L	1470895	2L_1470895_SNP [dm3] 2L_1470895_SNP [dm6]	A	T	3.372e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7095402	3L_7095402_SNP [dm3] 3L_7102302_SNP [dm6]	A	C	3.381e^-4	0.935	INTRON form3
3L	13942730	3L_13942730_SNP [dm3] 3L_13949630_SNP [dm6]	G	A	3.383e^-4	0.935	INTRON CG32137	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19790107	2R_19790107_SNP [dm3] 2R_23902584_SNP [dm6]	T	A	3.387e^-4	0.935	SPLICE_SITE_REGION Lpt INTRON Lpt
3R	13785223	3R_13785223_SNP [dm3] 3R_17959501_SNP [dm6]	C	T	3.393e^-4	0.935	INTRON cpo
2L	14515807	2L_14515807_SNP [dm3] 2L_14515807_SNP [dm6]	A	T	3.397e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6224846	3L_6224846_SNP [dm3] 3L_6231746_SNP [dm6]	G	A	3.406e^-4	0.935	DOWNSTREAM CG13299 & 1 other INTERGENIC
X	6198723	X_6198723_SNP [dm3] X_6304690_SNP [dm6]	A	T	3.416e^-4	0.935	INTRON CG3823	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12850957	3L_12850957_INS [dm3] 3L_12857857_INS [dm6]	A	AT	3.420e^-4	0.935	UTR_3_PRIME CG32107 DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
2L	5772244	2L_5772244_SNP [dm3] 2L_5772244_SNP [dm6]	C	G	3.423e^-4	0.935	UTR_5_PRIME CG9171 DOWNSTREAM CR31912 INTRON CG9171
2R	19135807	2R_19135807_SNP [dm3] 2R_23248284_SNP [dm6]	A	G	3.424e^-4	0.935	UPSTREAM RpL22-like INTERGENIC
3L	1016029	3L_1016029_MNP [dm3] 3L_1016029_MNP [dm6]	GCA	TAC	3.434e^-4	0.935	INTRON trio
3L	12874212	3L_12874212_SNP [dm3] 3L_12881112_SNP [dm6]	C	G	3.437e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9187528	2L_9187528_DEL [dm3] 2L_9187528_DEL [dm6]	TT	T	3.442e^-4	0.935	INTRON tai	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6356891	3L_6356891_DEL [dm3] 3L_6363791_DEL [dm6]	AA	A	3.442e^-4	0.935	INTERGENIC
3L	1112100	3L_1112100_SNP [dm3] 3L_1112100_SNP [dm6]	T	C	3.444e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10008701	2R_10008701_SNP [dm3] 2R_14121196_SNP [dm6]	T	C	3.451e^-4	0.935	INTRON Prosap
3L	9510164	3L_9510164_SNP [dm3] 3L_9517064_SNP [dm6]	G	A	3.462e^-4	0.935	INTRON CG33700
2L	4989727	2L_4989727_SNP [dm3] 2L_4989727_SNP [dm6]	A	G	3.470e^-4	0.935	INTRON CG34126
X	4330175	X_4330175_SNP [dm3] X_4436142_SNP [dm6]	C	T	3.478e^-4	0.935	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	11221223	3R_11221223_SNP [dm3] 3R_15395501_SNP [dm6]	G	T	3.480e^-4	0.935	INTRON Rbp
2L	6501710	2L_6501710_SNP [dm3] 2L_6501710_SNP [dm6]	C	A	3.486e^-4	0.935	INTRON CG31637	TF binding site mE1_TFBS_sens
3L	12001889	3L_12001889_SNP [dm3] 3L_12008789_SNP [dm6]	G	T	3.487e^-4	0.935	SYNONYMOUS_CODING rols DOWNSTREAM CG6928	TF binding site mE1_TFBS_cad
2R	18554431	2R_18554431_SNP [dm3] 2R_22666926_SNP [dm6]	G	A	3.492e^-4	0.935	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	12257468	3R_12257468_SNP [dm3] 3R_16431746_SNP [dm6]	T	A	3.495e^-4	0.935	UPSTREAM tRNA:CR31282 & 1 other INTRON CG31279	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	3490267	2R_3490267_SNP [dm3] 2R_7602762_SNP [dm6]	G	T	3.508e^-4	0.935	INTRON CG1358	TF binding site mE1_TFBS_cad
2L	1841853	2L_1841853_SNP [dm3] 2L_1841853_SNP [dm6]	G	A	3.518e^-4	0.935	INTRON wry
2R	19887168	2R_19887168_SNP [dm3] 2R_23999645_SNP [dm6]	A	G	3.529e^-4	0.935	INTRON Unc-89	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3017550	2R_3017550_SNP [dm3] 2R_7130045_SNP [dm6]	T	A	3.530e^-4	0.935	UPSTREAM Cyp9b1 DOWNSTREAM Cyp9b2 INTERGENIC
2L	537777	2L_537777_SNP [dm3] 2L_537777_SNP [dm6]	G	C	3.531e^-4	0.935	INTRON ush	TF binding site mE1_TFBS_cad
3L	2043519	3L_2043519_SNP [dm3] 3L_2043519_SNP [dm6]	T	C	3.541e^-4	0.935	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18283413	2R_18283413_SNP [dm3] 2R_22395908_SNP [dm6]	A	T	3.543e^-4	0.935	INTRON babos	TF binding site mE1_TFBS_HSA
3L	14676041	3L_14676041_SNP [dm3] 3L_14682941_SNP [dm6]	A	G	3.566e^-4	0.935	INTRON ome
X	18838735	X_18838735_INS [dm3] X_18944702_INS [dm6]	T	TG	3.580e^-4	0.935	INTRON CG43759
3L	6726674	3L_6726674_SNP [dm3] 3L_6733574_SNP [dm6]	G	A	3.582e^-4	0.935	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	15206818	2R_15206818_SNP [dm3] 2R_19319313_SNP [dm6]	C	T	3.582e^-4	0.935	INTRON Rgk1
3L	6224238	3L_6224238_SNP [dm3] 3L_6231138_SNP [dm6]	T	A	3.592e^-4	0.935	DOWNSTREAM CG13299 INTERGENIC
2L	10389940	2L_10389940_SNP [dm3] 2L_10389940_SNP [dm6]	C	G	3.593e^-4	0.935	INTRON da	TF binding site mE1_TFBS_cad
2R	3552937	2R_3552937_SNP [dm3] 2R_7665432_SNP [dm6]	G	A	3.595e^-4	0.935	UPSTREAM CG2064 DOWNSTREAM CG2065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9513334	3L_9513334_SNP [dm3] 3L_9520234_SNP [dm6]	A	G	3.599e^-4	0.935	INTRON CG33700
X	10134016	X_10134016_SNP [dm3] X_10239983_SNP [dm6]	A	G	3.601e^-4	0.935	INTRON Hk
3R	6846285	3R_6846285_SNP [dm3] 3R_11020563_SNP [dm6]	T	C	3.606e^-4	0.935	INTRON CG34114
2L	1902479	2L_1902479_SNP [dm3] 2L_1902479_SNP [dm6]	A	C	3.614e^-4	0.935	INTRON CG7337
2L	10389977	2L_10389977_SNP [dm3] 2L_10389977_SNP [dm6]	A	C	3.617e^-4	0.935	INTRON da	TF binding site mE1_TFBS_cad
3L	6224839	3L_6224839_SNP [dm3] 3L_6231739_SNP [dm6]	A	T	3.617e^-4	0.935	DOWNSTREAM CG13299 & 1 other INTERGENIC
X	20948603	X_20948603_SNP [dm3] X_21077576_SNP [dm6]	G	A	3.619e^-4	0.935	UTR_3_PRIME bves INTRON bves
X	16854308	X_16854308_SNP [dm3] X_16960275_SNP [dm6]	G	A	3.619e^-4	0.935	SPLICE_SITE_REGION CG9086 INTRON CG9086
2L	1711156	2L_1711156_SNP [dm3] 2L_1711156_SNP [dm6]	T	A	3.626e^-4	0.935	SYNONYMOUS_CODING mRpL48 UPSTREAM CG17660 DOWNSTREAM frtz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	20317020	3R_20317020_SNP [dm3] 3R_24491298_SNP [dm6]	C	G	3.629e^-4	0.935	DOWNSTREAM nAChRalpha2 INTERGENIC
2R	15383378	2R_15383378_SNP [dm3] 2R_19495873_SNP [dm6]	G	A	3.632e^-4	0.935	SYNONYMOUS_CODING hpo	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6224493	3L_6224493_DEL [dm3] 3L_6231393_DEL [dm6]	ATATTAAGCAAAGAAGGAAA...	A	3.638e^-4	0.935	DOWNSTREAM CG13299 INTERGENIC
3L	8589959	3L_8589959_SNP [dm3] 3L_8596859_SNP [dm6]	G	T	3.651e^-4	0.935	SYNONYMOUS_CODING CG43078 DOWNSTREAM CG43078	TF binding site mE1_TFBS_chinmo
2R	12982654	2R_12982654_INS [dm3] 2R_17095149_INS [dm6]	G	GCGTA	3.658e^-4	0.935	INTRON GstS1	TF binding site mE1_TFBS_cad
X	2983716	X_2983716_SNP [dm3] X_3089683_SNP [dm6]	G	C	3.659e^-4	0.935	INTRON kirre
2L	1842621	2L_1842621_SNP [dm3] 2L_1842621_SNP [dm6]	G	A	3.662e^-4	0.935	INTRON wry
3L	10865813	3L_10865813_SNP [dm3] 3L_10872713_SNP [dm6]	A	G	3.663e^-4	0.935	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	11458673	2R_11458673_SNP [dm3] 2R_15571168_SNP [dm6]	G	A	3.666e^-4	0.935	SYNONYMOUS_CODING Cdk5 UPSTREAM CG30466 INTRON CG30466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3L	8859243	3L_8859243_SNP [dm3] 3L_8866143_SNP [dm6]	A	C	3.668e^-4	0.935	INTRON dally
3R	12153091	3R_12153091_SNP [dm3] 3R_16327369_SNP [dm6]	C	A	3.682e^-4	0.935	UPSTREAM CG17930 DOWNSTREAM CG17929 INTRON Sulf1
2R	9867155	2R_9867155_SNP [dm3] 2R_13979650_SNP [dm6]	C	G	3.685e^-4	0.935	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4692060	3L_4692060_SNP [dm3] 3L_4692060_SNP [dm6]	T	C	3.686e^-4	0.935	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
2R	14224011	2R_14224011_SNP [dm3] 2R_18336506_SNP [dm6]	G	A	3.686e^-4	0.935	INTRON sbb
2L	2724070	2L_2724070_SNP [dm3] 2L_2724070_SNP [dm6]	G	C	3.688e^-4	0.935	INTERGENIC
3L	18305220	3L_18305220_SNP [dm3] 3L_18312120_SNP [dm6]	G	T	3.690e^-4	0.935	INTERGENIC
2L	6606030	2L_6606030_SNP [dm3] 2L_6606030_SNP [dm6]	C	G	3.704e^-4	0.935	INTERGENIC
2L	13604808	2L_13604808_SNP [dm3] 2L_13604808_SNP [dm6]	T	C	3.710e^-4	0.935	INTRON kuz
2L	5635100	2L_5635100_SNP [dm3] 2L_5635100_SNP [dm6]	A	C	3.711e^-4	0.935	INTRON CG31646	TF binding site BDTNP1_TFBS_hb
3L	10735446	3L_10735446_INS [dm3] 3L_10742346_INS [dm6]	A	AA	3.720e^-4	0.935	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	19306794	2L_19306794_SNP [dm3] 2L_19306794_SNP [dm6]	C	G	3.731e^-4	0.935	INTERGENIC
3R	7807567	3R_7807567_SNP [dm3] 3R_11981845_SNP [dm6]	A	C	3.734e^-4	0.935	START_GAINED CG12224 UTR_5_PRIME CG12224	TF binding site mE1_TFBS_Trl
2R	7866622	2R_7866622_SNP [dm3] 2R_11979117_SNP [dm6]	A	G	3.738e^-4	0.935	UTR_3_PRIME CG30037 UPSTREAM CG30036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9244896	3R_9244896_MNP [dm3] 3R_13419174_MNP [dm6]	TCA	ATT	3.744e^-4	0.935	INTERGENIC
2L	6501646	2L_6501646_SNP [dm3] 2L_6501646_SNP [dm6]	T	C	3.744e^-4	0.935	INTRON CG31637	TF binding site mE1_TFBS_sens
3L	8590314	3L_8590314_SNP [dm3] 3L_8597214_SNP [dm6]	T	A	3.749e^-4	0.935	NON_SYNONYMOUS_CODING CG43078 DOWNSTREAM CG43078	TF binding site mE1_TFBS_chinmo
X	20374999	X_20374999_SNP [dm3] X_20503972_SNP [dm6]	G	A	3.750e^-4	0.935	INTRON RhoGAP19D
2L	12340592	2L_12340592_INS [dm3] 2L_12340592_INS [dm6]	T	TTCTC	3.752e^-4	0.935	INTERGENIC
2R	16390580	2R_16390580_SNP [dm3] 2R_20503075_SNP [dm6]	A	C	3.759e^-4	0.935	UPSTREAM Obp57c INTERGENIC	regulatory region REDfly_CRMs
2L	10534839	2L_10534839_SNP [dm3] 2L_10534839_SNP [dm6]	A	T	3.770e^-4	0.935	UTR_5_PRIME CG18302
2R	19308277	2R_19308277_SNP [dm3] 2R_23420754_SNP [dm6]	G	A	3.776e^-4	0.935	DOWNSTREAM CG9815 INTERGENIC
2L	8894953	2L_8894953_SNP [dm3] 2L_8894953_SNP [dm6]	G	A	3.777e^-4	0.935	INTERGENIC
2L	11146686	2L_11146686_SNP [dm3] 2L_11146686_SNP [dm6]	G	A	3.778e^-4	0.935	INTRON Gyc32E
3L	8576712	3L_8576712_SNP [dm3] 3L_8583612_SNP [dm6]	T	A	3.786e^-4	0.935	UTR_5_PRIME CG43078 INTRON CG43078
3R	22928270	3R_22928270_SNP [dm3] 3R_27102548_SNP [dm6]	G	A	3.795e^-4	0.935	SYNONYMOUS_CODING CG17189 DOWNSTREAM CG6074
X	18842936	X_18842936_SNP [dm3] X_18948903_SNP [dm6]	A	G	3.802e^-4	0.935	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23257705	3R_23257705_SNP [dm3] 3R_27431983_SNP [dm6]	A	C	3.802e^-4	0.935	INTRON side
3R	10284413	3R_10284413_SNP [dm3] 3R_14458691_SNP [dm6]	G	T	3.803e^-4	0.935	INTRON cv-c
3R	14337215	3R_14337215_SNP [dm3] 3R_18511493_SNP [dm6]	A	G	3.803e^-4	0.935	INTRON fru
3L	10426498	3L_10426498_SNP [dm3] 3L_10433398_SNP [dm6]	G	A	3.804e^-4	0.935	SYNONYMOUS_CODING Ir67c	TF binding site mE1_TFBS_sens
3R	14307122	3R_14307122_SNP [dm3] 3R_18481400_SNP [dm6]	C	T	3.804e^-4	0.935	UPSTREAM fru INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11172572	2L_11172572_SNP [dm3] 2L_11172572_SNP [dm6]	C	T	3.807e^-4	0.935	UPSTREAM Vm32E INTRON Ca-beta
2L	8981996	2L_8981996_SNP [dm3] 2L_8981996_SNP [dm6]	A	C	3.815e^-4	0.935	DOWNSTREAM CG18662 INTRON CG13101
3L	2043553	3L_2043553_SNP [dm3] 3L_2043553_SNP [dm6]	T	G	3.816e^-4	0.935	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12681075	3L_12681075_SNP [dm3] 3L_12687975_SNP [dm6]	G	A	3.823e^-4	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2954983	2R_2954983_SNP [dm3] 2R_7067478_SNP [dm6]	G	T	3.828e^-4	0.935	UPSTREAM CG12836 INTERGENIC
3R	6393445	3R_6393445_SNP [dm3] 3R_10567723_SNP [dm6]	T	G	3.853e^-4	0.935	INTRON hth
2L	19265241	2L_19265241_SNP [dm3] 2L_19265241_SNP [dm6]	T	C	3.854e^-4	0.935	INTERGENIC
3R	12715450	3R_12715450_SNP [dm3] 3R_16889728_SNP [dm6]	A	G	3.855e^-4	0.935	INTRON iab-8
3R	25957115	3R_25957115_SNP [dm3] 3R_30131393_SNP [dm6]	A	G	3.861e^-4	0.935	SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8198953	3L_8198953_SNP [dm3] 3L_8205853_SNP [dm6]	T	G	3.865e^-4	0.935	INTERGENIC
2L	4818461	2L_4818461_SNP [dm3] 2L_4818461_SNP [dm6]	C	A	3.865e^-4	0.935	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7967008	3L_7967008_SNP [dm3] 3L_7973908_SNP [dm6]	A	G	3.865e^-4	0.935	SYNONYMOUS_CODING CG8042	TF binding site mE1_TFBS_chinmo
3R	19222879	3R_19222879_SNP [dm3] 3R_23397157_SNP [dm6]	A	G	3.874e^-4	0.935	INTERGENIC
2L	3348629	2L_3348629_SNP [dm3] 2L_3348629_SNP [dm6]	T	C	3.875e^-4	0.935	INTRON E23
X	1054749	X_1054749_SNP [dm3] X_1160716_SNP [dm6]	T	C	3.880e^-4	0.935	INTRON eIF4E-7
2R	6641276	2R_6641276_SNP [dm3] 2R_10753771_SNP [dm6]	G	A	3.880e^-4	0.935	INTRON CG33144
2R	20408442	2R_20408442_SNP [dm3] 2R_24520919_SNP [dm6]	T	C	3.885e^-4	0.935	SYNONYMOUS_CODING Ir60d UPSTREAM Ir60f DOWNSTREAM CG4612	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14922235	2L_14922235_SNP [dm3] 2L_14922235_SNP [dm6]	A	C	3.891e^-4	0.935	INTRON CG42313	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12036146	3L_12036146_SNP [dm3] 3L_12043046_SNP [dm6]	C	T	3.892e^-4	0.935	NON_SYNONYMOUS_CODING CG6793 INTRON rols	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2389589	3L_2389589_SNP [dm3] 3L_2389589_SNP [dm6]	T	A	3.893e^-4	0.935	UTR_3_PRIME CG32299 & 2 others INTRON CG45186
2L	10793108	2L_10793108_SNP [dm3] 2L_10793108_SNP [dm6]	G	A	3.895e^-4	0.935	INTRON CG31869
2L	6549913	2L_6549913_SNP [dm3] 2L_6549913_SNP [dm6]	C	A	3.914e^-4	0.936	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18689814	3R_18689814_INS [dm3] 3R_22864092_INS [dm6]	G	GCG	3.927e^-4	0.936	INTERGENIC
3R	16162611	3R_16162611_SNP [dm3] 3R_20336889_SNP [dm6]	G	C	3.927e^-4	0.936	INTERGENIC
2L	10389966	2L_10389966_SNP [dm3] 2L_10389966_SNP [dm6]	C	T	3.937e^-4	0.936	INTRON da	TF binding site mE1_TFBS_cad
2L	15569274	2L_15569274_SNP [dm3] 2L_15569274_SNP [dm6]	C	T	3.938e^-4	0.936	INTRON kek3
3L	17480823	3L_17480823_SNP [dm3] 3L_17487723_SNP [dm6]	T	C	3.939e^-4	0.936	UTR_5_PRIME Oatp74D INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	12339713	2L_12339713_SNP [dm3] 2L_12339713_SNP [dm6]	T	A	3.939e^-4	0.936	DOWNSTREAM CG31862 INTERGENIC
2R	10892725	2R_10892725_MNP [dm3] 2R_15005220_MNP [dm6]	TTT	AAA	3.940e^-4	0.936	INTERGENIC
2L	8978370	2L_8978370_INS [dm3] 2L_8978370_INS [dm6]	A	AATGA	3.943e^-4	0.936	INTRON CG13101
3L	22242495	3L_22242495_SNP [dm3] 3L_22249395_SNP [dm6]	C	G	3.951e^-4	0.937	INTERGENIC
2R	3583297	2R_3583297_SNP [dm3] 2R_7695792_SNP [dm6]	T	C	3.959e^-4	0.937	UPSTREAM CG1399 INTRON CG1399
2L	10389980	2L_10389980_SNP [dm3] 2L_10389980_SNP [dm6]	C	G	3.960e^-4	0.937	INTRON da	TF binding site mE1_TFBS_cad
3L	3567165	3L_3567165_SNP [dm3] 3L_3567165_SNP [dm6]	A	G	3.971e^-4	0.938	INTRON Eip63E
X	20890879	X_20890879_SNP [dm3] X_21019852_SNP [dm6]	A	C	3.978e^-4	0.938	INTERGENIC
2L	11143706	2L_11143706_SNP [dm3] 2L_11143706_SNP [dm6]	T	A	3.983e^-4	0.939	DOWNSTREAM CG31867 INTRON Gyc32E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6198306	X_6198306_SNP [dm3] X_6304273_SNP [dm6]	C	A	4.010e^-4	0.942	INTRON CG3823	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6340299	2L_6340299_SNP [dm3] 2L_6340299_SNP [dm6]	A	T	4.012e^-4	0.942	INTRON Cpr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3R	18689763	3R_18689763_SNP [dm3] 3R_22864041_SNP [dm6]	G	A	4.022e^-4	0.942	INTERGENIC
3L	4691941	3L_4691941_SNP [dm3] 3L_4691941_SNP [dm6]	A	T	4.026e^-4	0.942	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_Trl
X	12915712	X_12915712_SNP [dm3] X_13021679_SNP [dm6]	G	A	4.030e^-4	0.942	UPSTREAM CG2209 INTRON rad
3L	7556388	3L_7556388_SNP [dm3] 3L_7563288_SNP [dm6]	A	G	4.030e^-4	0.942	INTRON frac	TF binding site BDTNP1_TFBS_twi
3R	15236626	3R_15236626_SNP [dm3] 3R_19410904_SNP [dm6]	C	T	4.045e^-4	0.942	UTR_3_PRIME CG11626
3R	6844216	3R_6844216_SNP [dm3] 3R_11018494_SNP [dm6]	C	A	4.049e^-4	0.942	INTRON CG34114
3L	4998405	3L_4998405_SNP [dm3] 3L_4998405_SNP [dm6]	T	C	4.049e^-4	0.942	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8721883	3R_8721883_SNP [dm3] 3R_12896161_SNP [dm6]	G	T	4.055e^-4	0.942	INTERGENIC
X	18868559	X_18868559_SNP [dm3] X_18974526_SNP [dm6]	C	T	4.056e^-4	0.942	INTRON CG43759	TF binding site mE1_TFBS_inv
3L	8236538	3L_8236538_SNP [dm3] 3L_8243438_SNP [dm6]	C	T	4.056e^-4	0.942	INTRON Dscam4
3R	8721821	3R_8721821_SNP [dm3] 3R_12896099_SNP [dm6]	G	C	4.080e^-4	0.945	INTERGENIC
2L	6337774	2L_6337774_SNP [dm3] 2L_6337774_SNP [dm6]	A	G	4.083e^-4	0.945	INTRON Pez	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16131973	3L_16131973_SNP [dm3] 3L_16138873_SNP [dm6]	C	T	4.085e^-4	0.945	UTR_3_PRIME CG5151 UPSTREAM CG5157 DOWNSTREAM CG5151 & 1 other
2L	2336163	2L_2336163_SNP [dm3] 2L_2336163_SNP [dm6]	A	G	4.106e^-4	0.947	INTRON CG9967 & 1 other
2L	18850409	2L_18850409_SNP [dm3] 2L_18850409_SNP [dm6]	T	A	4.117e^-4	0.947	INTRON CG17321
2R	15765938	2R_15765938_SNP [dm3] 2R_19878433_SNP [dm6]	C	T	4.124e^-4	0.947	DOWNSTREAM CG13872 INTERGENIC
2R	5289856	2R_5289856_SNP [dm3] 2R_9402351_SNP [dm6]	A	G	4.127e^-4	0.947	INTRON wun	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	10797491	2R_10797491_DEL [dm3] 2R_14909986_DEL [dm6]	AG	A	4.132e^-4	0.947	INTRON CG10249	TF binding site BDTNP1_TFBS_twi
2L	1472257	2L_1472257_SNP [dm3] 2L_1472257_SNP [dm6]	G	A	4.145e^-4	0.947	INTERGENIC
2R	1578253	2R_1578253_SNP [dm3] 2R_5690748_SNP [dm6]	T	C	4.151e^-4	0.947	INTRON scaf	TF binding site BDTNP1_TFBS_dl
2R	18988745	2R_18988745_SNP [dm3] 2R_23101222_SNP [dm6]	A	T	4.151e^-4	0.947	UPSTREAM RpL37b DOWNSTREAM CG42703 INTERGENIC
X	14090973	X_14090973_SNP [dm3] X_14196940_SNP [dm6]	A	G	4.151e^-4	0.947	NON_SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	25022790	3R_25022790_SNP [dm3] 3R_29197068_SNP [dm6]	A	C	4.152e^-4	0.947	UPSTREAM CG14515 INTERGENIC
3R	25875940	3R_25875940_SNP [dm3] 3R_30050218_SNP [dm6]	T	C	4.155e^-4	0.947	INTRON CG15528 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14686849	2L_14686849_SNP [dm3] 2L_14686849_SNP [dm6]	A	G	4.162e^-4	0.947	INTRON osp
3L	8395541	3L_8395541_SNP [dm3] 3L_8402441_SNP [dm6]	C	T	4.166e^-4	0.947	UTR_3_PRIME mkg-p & 1 other DOWNSTREAM CG7120
3R	17618552	3R_17618552_SNP [dm3] 3R_21792830_SNP [dm6]	G	T	4.171e^-4	0.947	INTRON CASK	TF binding site mE1_TFBS_cad
2L	19307385	2L_19307385_SNP [dm3] 2L_19307385_SNP [dm6]	A	G	4.172e^-4	0.947	INTERGENIC
3L	2401277	3L_2401277_SNP [dm3] 3L_2401277_SNP [dm6]	C	T	4.182e^-4	0.947	INTRON CG45186
X	19222678	X_19222678_SNP [dm3] X_19328645_SNP [dm6]	T	C	4.188e^-4	0.947	UTR_3_PRIME nAChRalpha7
X	18862015	X_18862015_SNP [dm3] X_18967982_SNP [dm6]	A	G	4.189e^-4	0.947	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	12915440	X_12915440_SNP [dm3] X_13021407_SNP [dm6]	T	A	4.197e^-4	0.947	UPSTREAM CG2209 INTRON rad
2L	12340603	2L_12340603_INS [dm3] 2L_12340603_INS [dm6]	T	TTTT	4.204e^-4	0.947	INTERGENIC
3R	21967735	3R_21967735_SNP [dm3] 3R_26142013_SNP [dm6]	C	T	4.213e^-4	0.947	INTERGENIC
3R	9159031	3R_9159031_SNP [dm3] 3R_13333309_SNP [dm6]	T	C	4.220e^-4	0.947	INTRON PK2-R2
2R	6260825	2R_6260825_SNP [dm3] 2R_10373320_SNP [dm6]	T	G	4.228e^-4	0.947	INTRON CG42732
2L	6458032	2L_6458032_DEL [dm3] 2L_6458032_DEL [dm6]	TTACT	T	4.228e^-4	0.947	DOWNSTREAM CG16947 INTRON frj	TF binding site mE1_TFBS_sens
2L	14920047	2L_14920047_SNP [dm3] 2L_14920047_SNP [dm6]	G	T	4.238e^-4	0.947	INTRON CG42313
3L	16232519	3L_16232519_SNP [dm3] 3L_16239419_SNP [dm6]	C	A	4.248e^-4	0.947	UTR_3_PRIME l_3_72Dr	TF binding site mE1_TFBS_cad
2L	528469	2L_528469_SNP [dm3] 2L_528469_SNP [dm6]	G	T	4.250e^-4	0.947	INTRON ush	regulatory region REDfly_CRMs
2L	6617878	2L_6617878_SNP [dm3] 2L_6617878_SNP [dm6]	C	T	4.259e^-4	0.947	SYNONYMOUS_CODING CG11320 DOWNSTREAM CG11050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12715449	3R_12715449_SNP [dm3] 3R_16889727_SNP [dm6]	A	G	4.260e^-4	0.947	INTRON iab-8
2L	1711968	2L_1711968_SNP [dm3] 2L_1711968_SNP [dm6]	C	G	4.266e^-4	0.947	SYNONYMOUS_CODING frtz DOWNSTREAM mRpL48	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26700565	3R_26700565_SNP [dm3] 3R_30874843_SNP [dm6]	T	C	4.295e^-4	0.947	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
3L	4634079	3L_4634079_SNP [dm3] 3L_4634079_SNP [dm6]	A	G	4.295e^-4	0.947	DOWNSTREAM CG13716 INTRON axo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	8772239	2L_8772239_SNP [dm3] 2L_8772239_SNP [dm6]	A	G	4.296e^-4	0.947	DOWNSTREAM CG9466 INTRON CG9465
3L	12735870	3L_12735870_SNP [dm3] 3L_12742770_SNP [dm6]	C	G	4.298e^-4	0.947	INTRON CG32112
3L	3887800	3L_3887800_SNP [dm3] 3L_3887800_SNP [dm6]	C	A	4.307e^-4	0.947	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10850552	2L_10850552_SNP [dm3] 2L_10850552_SNP [dm6]	G	C	4.309e^-4	0.947	UTR_5_PRIME porin UPSTREAM porin INTRON porin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19252499	2L_19252499_SNP [dm3] 2L_19252499_SNP [dm6]	T	C	4.317e^-4	0.947	INTERGENIC
2R	2954982	2R_2954982_SNP [dm3] 2R_7067477_SNP [dm6]	T	A	4.319e^-4	0.947	UPSTREAM CG12836 INTERGENIC
2L	5631694	2L_5631694_SNP [dm3] 2L_5631694_SNP [dm6]	G	A	4.320e^-4	0.947	INTRON CG31646 EXON CR44822
2L	6340304	2L_6340304_SNP [dm3] 2L_6340304_SNP [dm6]	A	G	4.327e^-4	0.947	INTRON Cpr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
X	18868415	X_18868415_SNP [dm3] X_18974382_SNP [dm6]	T	A	4.332e^-4	0.947	INTRON CG43759	TF binding site mE1_TFBS_inv
X	20899987	X_20899987_SNP [dm3] X_21028960_SNP [dm6]	C	G	4.333e^-4	0.947	UTR_3_PRIME CG1529 UPSTREAM CG1532
3L	3968338	3L_3968338_SNP [dm3] 3L_3968338_SNP [dm6]	T	A	4.334e^-4	0.947	INTERGENIC
X	8292375	X_8292375_SNP [dm3] X_8398342_SNP [dm6]	G	T	4.342e^-4	0.947	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4684172	2L_4684172_SNP [dm3] 2L_4684172_SNP [dm6]	C	T	4.342e^-4	0.947	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9111701	3R_9111701_SNP [dm3] 3R_13285979_SNP [dm6]	C	T	4.348e^-4	0.947	SPLICE_SITE_REGION CG15888 SYNONYMOUS_CODING CG15888	TF binding site mE1_TFBS_cad
3R	8452205	3R_8452205_SNP [dm3] 3R_12626483_SNP [dm6]	T	A	4.349e^-4	0.947	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	2043687	3L_2043687_SNP [dm3] 3L_2043687_SNP [dm6]	T	A	4.356e^-4	0.947	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19048469	2R_19048469_SNP [dm3] 2R_23160946_SNP [dm6]	A	G	4.359e^-4	0.947	SPLICE_SITE_REGION CG9899 INTRON CG9899
2R	19048470	2R_19048470_SNP [dm3] 2R_23160947_SNP [dm6]	G	A	4.359e^-4	0.947	SPLICE_SITE_REGION CG9899 INTRON CG9899
2R	12982307	2R_12982307_SNP [dm3] 2R_17094802_SNP [dm6]	C	G	4.361e^-4	0.947	SYNONYMOUS_CODING GstS1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18372029	3L_18372029_SNP [dm3] 3L_18378929_SNP [dm6]	A	T	4.365e^-4	0.947	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	6543997	2R_6543997_INS [dm3] 2R_10656492_INS [dm6]	C	CAAAAGCAATA...	4.369e^-4	0.947	DOWNSTREAM CR44452 INTERGENIC
2R	9258451	2R_9258451_SNP [dm3] 2R_13370946_SNP [dm6]	G	A	4.380e^-4	0.947	INTERGENIC
3L	12824999	3L_12824999_SNP [dm3] 3L_12831899_SNP [dm6]	G	C	4.384e^-4	0.947	NON_SYNONYMOUS_CODING CG10960 INTRON CG10960	TF binding site mE1_TFBS_Trl
2R	9864804	2R_9864804_SNP [dm3] 2R_13977299_SNP [dm6]	G	T	4.385e^-4	0.947	NON_SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad
2R	11765571	2R_11765571_DEL [dm3] 2R_15878066_DEL [dm6]	TACCA	T	4.386e^-4	0.947	INTRON sli
3L	16233748	3L_16233748_SNP [dm3] 3L_16240648_SNP [dm6]	C	T	4.389e^-4	0.947	INTERGENIC
X	14917759	X_14917759_SNP [dm3] X_15023726_SNP [dm6]	A	G	4.404e^-4	0.949	UPSTREAM be INTRON hiw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9867167	2R_9867167_SNP [dm3] 2R_13979662_SNP [dm6]	A	G	4.412e^-4	0.95	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2087269	2L_2087269_SNP [dm3] 2L_2087269_SNP [dm6]	T	A	4.417e^-4	0.95	INTRON dpr3
3L	8474160	3L_8474160_SNP [dm3] 3L_8481060_SNP [dm6]	C	A	4.422e^-4	0.95	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18661529	3R_18661529_SNP [dm3] 3R_22835807_SNP [dm6]	T	A	4.434e^-4	0.951	INTERGENIC
3R	15236479	3R_15236479_SNP [dm3] 3R_19410757_SNP [dm6]	C	A	4.445e^-4	0.952	UTR_3_PRIME CG11626
3R	24656495	3R_24656495_SNP [dm3] 3R_28830773_SNP [dm6]	C	T	4.455e^-4	0.952	INTRON WASp	TF binding site mE1_TFBS_inv
X	17577007	X_17577007_SNP [dm3] X_17682974_SNP [dm6]	A	G	4.469e^-4	0.952	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7812847	3L_7812847_SNP [dm3] 3L_7819747_SNP [dm6]	A	C	4.473e^-4	0.952	INTRON Pdp1
3R	8721927	3R_8721927_SNP [dm3] 3R_12896205_SNP [dm6]	C	T	4.479e^-4	0.952	INTERGENIC
3R	19899085	3R_19899085_SNP [dm3] 3R_24073363_SNP [dm6]	G	A	4.490e^-4	0.952	INTRON 4EHP
3R	9244624	3R_9244624_SNP [dm3] 3R_13418902_SNP [dm6]	A	G	4.494e^-4	0.952	INTERGENIC
2L	15331439	2L_15331439_SNP [dm3] 2L_15331439_SNP [dm6]	A	T	4.495e^-4	0.952	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12825016	3L_12825016_SNP [dm3] 3L_12831916_SNP [dm6]	G	A	4.495e^-4	0.952	SYNONYMOUS_CODING CG10960 INTRON CG10960	TF binding site mE1_TFBS_Trl
2L	8982322	2L_8982322_SNP [dm3] 2L_8982322_SNP [dm6]	G	A	4.505e^-4	0.952	DOWNSTREAM CG18662 INTRON CG13101
3L	10852712	3L_10852712_SNP [dm3] 3L_10859612_SNP [dm6]	G	A	4.509e^-4	0.952	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	7942587	3L_7942587_SNP [dm3] 3L_7949487_SNP [dm6]	T	G	4.511e^-4	0.952	INTRON exex	TF binding site BDTNP1_TFBS_dl
2L	10748006	2L_10748006_SNP [dm3] 2L_10748006_SNP [dm6]	C	G	4.520e^-4	0.952	INTRON CG17124	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7030043	2L_7030043_SNP [dm3] 2L_7030043_SNP [dm6]	T	A	4.526e^-4	0.952	DOWNSTREAM Rab30 INTERGENIC
2L	10713560	2L_10713560_SNP [dm3] 2L_10713560_SNP [dm6]	G	A	4.529e^-4	0.952	INTERGENIC
2R	7566212	2R_7566212_DEL [dm3] 2R_11678707_DEL [dm6]	GGCAAAG	G	4.530e^-4	0.952	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	8937670	2L_8937670_SNP [dm3] 2L_8937670_SNP [dm6]	A	G	4.534e^-4	0.952	INTRON Tsp29Fb	TF binding site BDTNP1_TFBS_dl
2L	8982190	2L_8982190_SNP [dm3] 2L_8982190_SNP [dm6]	T	C	4.536e^-4	0.952	DOWNSTREAM CG18662 INTRON CG13101
2L	12340567	2L_12340567_SNP [dm3] 2L_12340567_SNP [dm6]	T	C	4.542e^-4	0.952	INTERGENIC
3L	9229626	3L_9229626_SNP [dm3] 3L_9236526_SNP [dm6]	A	G	4.562e^-4	0.952	SYNONYMOUS_CODING CG4483
2R	10797586	2R_10797586_SNP [dm3] 2R_14910081_SNP [dm6]	T	C	4.565e^-4	0.952	INTRON CG10249	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7095354	3L_7095354_SNP [dm3] 3L_7102254_SNP [dm6]	A	G	4.566e^-4	0.952	INTRON form3
3R	7716437	3R_7716437_SNP [dm3] 3R_11890715_SNP [dm6]	C	A	4.568e^-4	0.952	NON_SYNONYMOUS_CODING CG31368
X	12915462	X_12915462_SNP [dm3] X_13021429_SNP [dm6]	G	A	4.570e^-4	0.952	UPSTREAM CG2209 INTRON rad
2R	11287299	2R_11287299_SNP [dm3] 2R_15399794_SNP [dm6]	C	A	4.570e^-4	0.952	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19266617	2L_19266617_SNP [dm3] 2L_19266617_SNP [dm6]	T	G	4.574e^-4	0.952	INTERGENIC
X	19017490	X_19017490_SNP [dm3] X_19123457_SNP [dm6]	T	G	4.577e^-4	0.952	DOWNSTREAM CG15882 INTERGENIC
2R	18705928	2R_18705928_SNP [dm3] 2R_22818423_SNP [dm6]	A	C	4.583e^-4	0.952	UPSTREAM CG30271 INTRON CG30271
2L	19268034	2L_19268034_SNP [dm3] 2L_19268034_SNP [dm6]	A	G	4.584e^-4	0.952	INTERGENIC
3L	22739263	3L_22739263_SNP [dm3] 3L_22746163_SNP [dm6]	C	T	4.603e^-4	0.953	SYNONYMOUS_CODING CG7369	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens transposable element FlyBase
3R	17824893	3R_17824893_SNP [dm3] 3R_21999171_SNP [dm6]	C	G	4.609e^-4	0.953	INTRON Eip93F
3L	2341330	3L_2341330_SNP [dm3] 3L_2341330_SNP [dm6]	A	T	4.610e^-4	0.953	INTRON MsR1	TF binding site mE1_TFBS_inv
3R	7124471	3R_7124471_SNP [dm3] 3R_11298749_SNP [dm6]	G	T	4.625e^-4	0.953	INTRON CR31386	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12826516	3L_12826516_SNP [dm3] 3L_12833416_SNP [dm6]	T	C	4.633e^-4	0.953	UPSTREAM CG10960 INTRON CG10960	TF binding site BDTNP1_TFBS_dl
3L	6356939	3L_6356939_SNP [dm3] 3L_6363839_SNP [dm6]	C	T	4.636e^-4	0.953	INTERGENIC
3R	18526152	3R_18526152_SNP [dm3] 3R_22700430_SNP [dm6]	A	C	4.641e^-4	0.953	DOWNSTREAM CCAP & 1 other INTERGENIC
3L	6056136	3L_6056136_SNP [dm3] 3L_6063036_SNP [dm6]	T	G	4.644e^-4	0.953	UPSTREAM CG10472 INTERGENIC	TF binding site mE1_TFBS_cad
2R	14223099	2R_14223099_SNP [dm3] 2R_18335594_SNP [dm6]	C	T	4.649e^-4	0.953	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22618343	3R_22618343_SNP [dm3] 3R_26792621_SNP [dm6]	C	T	4.662e^-4	0.953	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8667364	2R_8667364_SNP [dm3] 2R_12779859_SNP [dm6]	C	T	4.674e^-4	0.953	UPSTREAM sca DOWNSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10071742	2L_10071742_SNP [dm3] 2L_10071742_SNP [dm6]	T	C	4.676e^-4	0.953	INTRON CG44153
3L	7095911	3L_7095911_INS [dm3] 3L_7102811_INS [dm6]	T	TAGGCGCTTCGGTT...	4.678e^-4	0.953	INTRON form3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12198431	3R_12198431_SNP [dm3] 3R_16372709_SNP [dm6]	G	A	4.679e^-4	0.953	EXON CR45193
X	18845894	X_18845894_SNP [dm3] X_18951861_SNP [dm6]	A	G	4.681e^-4	0.953	INTRON CG43759
X	5891455	X_5891455_SNP [dm3] X_5997422_SNP [dm6]	C	T	4.691e^-4	0.953	DOWNSTREAM CG4766 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14506400	2R_14506400_SNP [dm3] 2R_18618895_SNP [dm6]	T	C	4.701e^-4	0.953	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11172567	2L_11172567_SNP [dm3] 2L_11172567_SNP [dm6]	T	C	4.704e^-4	0.953	UPSTREAM Vm32E INTRON Ca-beta
X	15196790	X_15196790_SNP [dm3] X_15302757_SNP [dm6]	G	T	4.706e^-4	0.953	INTRON gce	TF binding site mE1_TFBS_HSA
2L	2378325	2L_2378325_SNP [dm3] 2L_2378325_SNP [dm6]	A	T	4.715e^-4	0.953	INTRON Atxn7	TF binding site mE1_TFBS_chinmo
3R	10273730	3R_10273730_INS [dm3] 3R_14448008_INS [dm6]	A	ACAATTTTACAA...	4.739e^-4	0.953	INTRON cv-c
2R	10578770	2R_10578770_SNP [dm3] 2R_14691265_SNP [dm6]	C	G	4.742e^-4	0.953	INTRON mspo
3L	1696420	3L_1696420_SNP [dm3] 3L_1696420_SNP [dm6]	A	C	4.759e^-4	0.953	DOWNSTREAM CG12011 INTRON CG7991
3L	1696422	3L_1696422_SNP [dm3] 3L_1696422_SNP [dm6]	T	G	4.759e^-4	0.953	DOWNSTREAM CG12011 INTRON CG7991
3R	15059619	3R_15059619_SNP [dm3] 3R_19233897_SNP [dm6]	C	A	4.759e^-4	0.953	SYNONYMOUS_CODING unc79
X	3025792	X_3025792_SNP [dm3] X_3131759_SNP [dm6]	G	C	4.764e^-4	0.953	SYNONYMOUS_CODING kirre
3L	6486227	3L_6486227_SNP [dm3] 3L_6493127_SNP [dm6]	A	C	4.774e^-4	0.953	NON_SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_sens
3L	18090570	3L_18090570_SNP [dm3] 3L_18097470_SNP [dm6]	C	T	4.774e^-4	0.953	INTRON CG13698
X	13797483	X_13797483_INS [dm3] X_13903450_INS [dm6]	C	CGGTTC	4.780e^-4	0.953	INTRON mamo
2L	6617914	2L_6617914_SNP [dm3] 2L_6617914_SNP [dm6]	C	G	4.781e^-4	0.953	SYNONYMOUS_CODING CG11320 DOWNSTREAM CG11050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11548521	3L_11548521_SNP [dm3] 3L_11555421_SNP [dm6]	G	A	4.789e^-4	0.953	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16233164	3L_16233164_SNP [dm3] 3L_16240064_SNP [dm6]	C	A	4.790e^-4	0.953	DOWNSTREAM l_3_72Dr INTERGENIC
2L	1464977	2L_1464977_SNP [dm3] 2L_1464977_SNP [dm6]	T	G	4.792e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	9260960	2R_9260960_SNP [dm3] 2R_13373455_SNP [dm6]	G	C	4.795e^-4	0.953	INTERGENIC
2L	6706428	2L_6706428_SNP [dm3] 2L_6706428_SNP [dm6]	G	C	4.799e^-4	0.953	INTRON Tsp
3L	3093138	3L_3093138_SNP [dm3] 3L_3093138_SNP [dm6]	G	A	4.809e^-4	0.953	INTRON Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11147047	2L_11147047_SNP [dm3] 2L_11147047_SNP [dm6]	T	A	4.812e^-4	0.953	INTRON Gyc32E
3R	20323340	3R_20323340_SNP [dm3] 3R_24497618_SNP [dm6]	T	G	4.812e^-4	0.953	INTERGENIC
2R	9867818	2R_9867818_SNP [dm3] 2R_13980313_SNP [dm6]	A	G	4.823e^-4	0.953	UPSTREAM CG6701 DOWNSTREAM Ctf4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1718580	3L_1718580_SNP [dm3] 3L_1718580_SNP [dm6]	G	A	4.829e^-4	0.953	INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	11284508	2R_11284508_SNP [dm3] 2R_15397003_SNP [dm6]	C	T	4.830e^-4	0.953	INTERGENIC
X	14918018	X_14918018_SNP [dm3] X_15023985_SNP [dm6]	T	G	4.836e^-4	0.953	UPSTREAM be INTRON hiw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10936604	2R_10936604_SNP [dm3] 2R_15049099_SNP [dm6]	C	T	4.836e^-4	0.953	DOWNSTREAM CR43622 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7730732	3L_7730732_SNP [dm3] 3L_7737632_SNP [dm6]	C	T	4.845e^-4	0.953	INTRON CG32373 & 1 other
2L	8330429	2L_8330429_SNP [dm3] 2L_8330429_SNP [dm6]	T	A	4.852e^-4	0.953	INTRON CG14275
2R	2954998	2R_2954998_SNP [dm3] 2R_7067493_SNP [dm6]	T	G	4.858e^-4	0.953	UPSTREAM CG12836 INTERGENIC
2L	6389905	2L_6389905_SNP [dm3] 2L_6389905_SNP [dm6]	C	T	4.858e^-4	0.953	INTRON CG42368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1059203	3L_1059203_SNP [dm3] 3L_1059203_SNP [dm6]	T	C	4.867e^-4	0.953	INTRON bab1
2R	9234730	2R_9234730_SNP [dm3] 2R_13347225_SNP [dm6]	G	A	4.887e^-4	0.953	INTRON CR44206
2L	7315580	2L_7315580_SNP [dm3] 2L_7315580_SNP [dm6]	G	A	4.892e^-4	0.953	UTR_3_PRIME wg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3L	6174022	3L_6174022_SNP [dm3] 3L_6180922_SNP [dm6]	G	A	4.904e^-4	0.953	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14939481	2R_14939481_SNP [dm3] 2R_19051976_SNP [dm6]	C	T	4.910e^-4	0.953	INTERGENIC
3R	8721837	3R_8721837_SNP [dm3] 3R_12896115_SNP [dm6]	C	A	4.914e^-4	0.953	INTERGENIC
3R	7978522	3R_7978522_SNP [dm3] 3R_12152800_SNP [dm6]	C	A	4.929e^-4	0.953	INTRON dpr15
2L	9125237	2L_9125237_SNP [dm3] 2L_9125237_SNP [dm6]	G	C	4.935e^-4	0.953	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	13765435	2L_13765435_SNP [dm3] 2L_13765435_SNP [dm6]	T	G	4.935e^-4	0.953	INTRON TM9SF4
3L	16237222	3L_16237222_SNP [dm3] 3L_16244122_SNP [dm6]	C	A	4.937e^-4	0.953	INTERGENIC
3L	1182458	3L_1182458_SNP [dm3] 3L_1182458_SNP [dm6]	T	A	4.947e^-4	0.953	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8333395	2L_8333395_SNP [dm3] 2L_8333395_SNP [dm6]	G	T	4.962e^-4	0.953	DOWNSTREAM CG14275 INTERGENIC
3L	1166492	3L_1166492_SNP [dm3] 3L_1166492_SNP [dm6]	T	C	4.969e^-4	0.953	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11847254	2R_11847254_SNP [dm3] 2R_15959749_SNP [dm6]	C	G	4.980e^-4	0.953	INTRON Strn-Mlck
2L	16573336	2L_16573336_SNP [dm3] 2L_16573336_SNP [dm6]	A	C	4.980e^-4	0.953	INTRON CG42389
3L	4579233	3L_4579233_INS [dm3] 3L_4579233_INS [dm6]	T	TG	4.988e^-4	0.953	INTRON CG42540
3R	21320721	3R_21320721_SNP [dm3] 3R_25494999_SNP [dm6]	T	G	4.991e^-4	0.953	INTRON CG33494	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9534675	2R_9534675_INS [dm3] 2R_13647170_INS [dm6]	A	AA	4.999e^-4	0.953	INTRON fas
3L	6224240	3L_6224240_SNP [dm3] 3L_6231140_SNP [dm6]	G	A	5.002e^-4	0.953	DOWNSTREAM CG13299 INTERGENIC
3R	8721891	3R_8721891_SNP [dm3] 3R_12896169_SNP [dm6]	C	T	5.003e^-4	0.953	INTERGENIC
2R	19790125	2R_19790125_SNP [dm3] 2R_23902602_SNP [dm6]	C	T	5.034e^-4	0.953	SYNONYMOUS_CODING Lpt
3L	10865759	3L_10865759_SNP [dm3] 3L_10872659_SNP [dm6]	G	T	5.034e^-4	0.953	SYNONYMOUS_CODING tna	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	3326923	2L_3326923_SNP [dm3] 2L_3326923_SNP [dm6]	T	A	5.035e^-4	0.953	UPSTREAM CG33282 DOWNSTREAM CG33281 INTERGENIC
2R	20364032	2R_20364032_SNP [dm3] 2R_24476509_SNP [dm6]	G	A	5.044e^-4	0.953	DOWNSTREAM CG16837 INTRON CG13579
2R	18564946	2R_18564946_SNP [dm3] 2R_22677441_SNP [dm6]	A	T	5.050e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16557437	3R_16557437_SNP [dm3] 3R_20731715_SNP [dm6]	A	T	5.054e^-4	0.953	NON_SYNONYMOUS_CODING CG31205 SPLICE_SITE_REGION CG31205
3L	6726049	3L_6726049_SNP [dm3] 3L_6732949_SNP [dm6]	T	G	5.060e^-4	0.953	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15331442	2L_15331442_SNP [dm3] 2L_15331442_SNP [dm6]	G	A	5.062e^-4	0.953	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6543791	2R_6543791_SNP [dm3] 2R_10656286_SNP [dm6]	G	C	5.064e^-4	0.953	DOWNSTREAM CR44452 INTERGENIC
2L	6321634	2L_6321634_SNP [dm3] 2L_6321634_SNP [dm6]	A	G	5.064e^-4	0.953	INTRON Ddr
2R	2481625	2R_2481625_SNP [dm3] 2R_6594120_SNP [dm6]	G	T	5.066e^-4	0.953	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	23201725	3R_23201725_SNP [dm3] 3R_27376003_SNP [dm6]	T	G	5.067e^-4	0.953	UTR_3_PRIME side
X	14666486	X_14666486_SNP [dm3] X_14772453_SNP [dm6]	G	T	5.071e^-4	0.953	INTERGENIC
3R	21230523	3R_21230523_SNP [dm3] 3R_25404801_SNP [dm6]	T	G	5.084e^-4	0.953	INTRON Fur1
X	19650315	X_19650315_SNP [dm3] X_19756282_SNP [dm6]	T	A	5.088e^-4	0.953	INTRON Pmp70
3L	5264425	3L_5264425_SNP [dm3] 3L_5271325_SNP [dm6]	G	C	5.103e^-4	0.953	INTRON shep
3L	3310477	3L_3310477_SNP [dm3] 3L_3310477_SNP [dm6]	A	G	5.105e^-4	0.953	INTRON ZnT63C
3R	24655967	3R_24655967_SNP [dm3] 3R_28830245_SNP [dm6]	A	G	5.108e^-4	0.953	INTRON WASp
2R	17492427	2R_17492427_SNP [dm3] 2R_21604922_SNP [dm6]	C	A	5.127e^-4	0.953	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15040943	3R_15040943_SNP [dm3] 3R_19215221_SNP [dm6]	T	C	5.128e^-4	0.953	SYNONYMOUS_CODING cry DOWNSTREAM vib
3L	14658757	3L_14658757_SNP [dm3] 3L_14665657_SNP [dm6]	A	C	5.139e^-4	0.953	INTRON dlp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19307084	2L_19307084_SNP [dm3] 2L_19307084_SNP [dm6]	C	T	5.143e^-4	0.953	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19254366	2L_19254366_SNP [dm3] 2L_19254366_SNP [dm6]	C	T	5.146e^-4	0.953	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	11140227	2R_11140227_SNP [dm3] 2R_15252722_SNP [dm6]	A	G	5.147e^-4	0.953	START_GAINED scb UTR_5_PRIME scb INTRON scb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2R	14457323	2R_14457323_SNP [dm3] 2R_18569818_SNP [dm6]	G	A	5.158e^-4	0.953	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	5020064	3L_5020064_SNP [dm3] 3L_5020064_SNP [dm6]	C	G	5.158e^-4	0.953	INTRON Con
2R	19177191	2R_19177191_SNP [dm3] 2R_23289668_SNP [dm6]	T	G	5.162e^-4	0.953	INTERGENIC
2R	9529611	2R_9529611_SNP [dm3] 2R_13642106_SNP [dm6]	C	T	5.163e^-4	0.953	INTRON fas
2L	2404713	2L_2404713_SNP [dm3] 2L_2404713_SNP [dm6]	T	A	5.167e^-4	0.953	INTRON VGlut
2R	14220469	2R_14220469_SNP [dm3] 2R_18332964_SNP [dm6]	G	T	5.169e^-4	0.953	INTRON sbb

By genomic position
Variant impact
Gene name

sd_Lifespan_Env_25 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results