DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.114e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.06243
In_3R_K	0.04687

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.4373	0.066
In_3R_K	5.461	0.0652

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2223 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

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Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	22876855	3R_22876855_SNP [dm3] 3R_27051133_SNP [dm6]	A	G	7.168e^-8	0.134	DOWNSTREAM TwdlT INTRON RYa-R
3R	26700455	3R_26700455_SNP [dm3] 3R_30874733_SNP [dm6]	G	T	7.776e^-7	0.692	UTR_3_PRIME CG15546	TF binding site mE1_TFBS_cad
3R	22613881	3R_22613881_SNP [dm3] 3R_26788159_SNP [dm6]	A	T	1.216e^-6	0.692	INTERGENIC
2R	18560357	2R_18560357_SNP [dm3] 2R_22672852_SNP [dm6]	A	G	2.342e^-6	0.692	UTR_3_PRIME RYBP DOWNSTREAM CR44761	TF binding site mE1_TFBS_HSA
3R	22876886	3R_22876886_DEL [dm3] 3R_27051164_DEL [dm6]	TTC	CA	2.484e^-6	0.692	DOWNSTREAM TwdlT INTRON RYa-R
3R	20347917	3R_20347917_SNP [dm3] 3R_24522195_SNP [dm6]	T	A	2.827e^-6	0.692	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A & 1 other	TF binding site BDTNP1_TFBS_dl
3R	8641458	3R_8641458_SNP [dm3] 3R_12815736_SNP [dm6]	C	A	2.965e^-6	0.692	INTRON CG31345
2L	1465048	2L_1465048_SNP [dm3] 2L_1465048_SNP [dm6]	T	C	2.985e^-6	0.692	INTERGENIC	TF binding site mE1_TFBS_D
2L	1464957	2L_1464957_SNP [dm3] 2L_1464957_SNP [dm6]	C	A	4.034e^-6	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	14279618	2R_14279618_SNP [dm3] 2R_18392113_SNP [dm6]	C	T	4.124e^-6	0.692	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3296595	2L_3296595_SNP [dm3] 2L_3296595_SNP [dm6]	T	G	4.548e^-6	0.692	SYNONYMOUS_CODING CG9663
2L	10617553	2L_10617553_SNP [dm3] 2L_10617553_SNP [dm6]	T	A	4.755e^-6	0.692	INTRON Trim9
3R	8649001	3R_8649001_SNP [dm3] 3R_12823279_SNP [dm6]	G	A	4.797e^-6	0.692	INTERGENIC
3R	8651161	3R_8651161_SNP [dm3] 3R_12825439_SNP [dm6]	C	A	5.404e^-6	0.709	INTERGENIC
3R	8649002	3R_8649002_SNP [dm3] 3R_12823280_SNP [dm6]	T	A	5.810e^-6	0.709	INTERGENIC
2R	14229772	2R_14229772_SNP [dm3] 2R_18342267_SNP [dm6]	A	C	6.052e^-6	0.709	INTRON sbb	TF binding site BDTNP1_TFBS_da
3L	8548743	3L_8548743_SNP [dm3] 3L_8555643_SNP [dm6]	G	C	6.433e^-6	0.71	INTRON rhea
2L	7633859	2L_7633859_SNP [dm3] 2L_7633859_SNP [dm6]	C	T	7.997e^-6	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	18272012	2R_18272012_SNP [dm3] 2R_22384507_SNP [dm6]	G	A	8.439e^-6	0.733	INTRON CG13506	TF binding site mE1_TFBS_Trl
3R	8679048	3R_8679048_SNP [dm3] 3R_12853326_SNP [dm6]	G	A	8.812e^-6	0.733	INTERGENIC
3R	21350335	3R_21350335_SNP [dm3] 3R_25524613_SNP [dm6]	G	T	9.269e^-6	0.733	INTRON msi
3R	8667437	3R_8667437_SNP [dm3] 3R_12841715_SNP [dm6]	C	T	1.087e^-5	0.733	UTR_3_PRIME beat-Va DOWNSTREAM beat-Va
2L	6947649	2L_6947649_SNP [dm3] 2L_6947649_SNP [dm6]	A	G	1.268e^-5	0.733	SYNONYMOUS_CODING ihog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9253600	2R_9253600_SNP [dm3] 2R_13366095_SNP [dm6]	T	A	1.317e^-5	0.733	INTERGENIC
2L	10273425	2L_10273425_SNP [dm3] 2L_10273425_SNP [dm6]	G	C	1.332e^-5	0.733	INTRON Utx
2L	3296724	2L_3296724_SNP [dm3] 2L_3296724_SNP [dm6]	C	A	1.347e^-5	0.733	INTRON CG9663
2R	17082950	2R_17082950_SNP [dm3] 2R_21195445_SNP [dm6]	C	A	1.353e^-5	0.733	INTRON Lapsyn
3L	14187940	3L_14187940_SNP [dm3] 3L_14194840_SNP [dm6]	T	C	1.378e^-5	0.733	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9244624	3R_9244624_SNP [dm3] 3R_13418902_SNP [dm6]	A	G	1.455e^-5	0.733	INTERGENIC
3R	8650657	3R_8650657_SNP [dm3] 3R_12824935_SNP [dm6]	C	A	1.465e^-5	0.733	INTERGENIC
2R	18259827	2R_18259827_SNP [dm3] 2R_22372322_SNP [dm6]	A	C	1.507e^-5	0.733	INTRON Liprin-gamma
2L	10617622	2L_10617622_SNP [dm3] 2L_10617622_SNP [dm6]	A	C	1.517e^-5	0.733	INTRON Trim9
3L	3914030	3L_3914030_SNP [dm3] 3L_3914030_SNP [dm6]	A	C	1.524e^-5	0.733	INTRON Eip63F-1
3L	2770025	3L_2770025_SNP [dm3] 3L_2770025_SNP [dm6]	T	A	1.541e^-5	0.733	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8651023	3R_8651023_SNP [dm3] 3R_12825301_SNP [dm6]	G	A	1.561e^-5	0.733	INTERGENIC
3R	8650265	3R_8650265_SNP [dm3] 3R_12824543_SNP [dm6]	A	G	1.627e^-5	0.733	INTERGENIC
3R	24747991	3R_24747991_SNP [dm3] 3R_28922269_SNP [dm6]	G	C	1.660e^-5	0.733	UTR_3_PRIME Doa UPSTREAM CG11828 DOWNSTREAM Doa
2L	6947708	2L_6947708_SNP [dm3] 2L_6947708_SNP [dm6]	T	G	1.751e^-5	0.733	SYNONYMOUS_CODING ihog	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8639076	3R_8639076_SNP [dm3] 3R_12813354_SNP [dm6]	G	T	1.778e^-5	0.733	INTRON CG31345
2L	11344273	2L_11344273_SNP [dm3] 2L_11344273_SNP [dm6]	G	A	1.793e^-5	0.733	UPSTREAM CG14926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	1464943	2L_1464943_SNP [dm3] 2L_1464943_SNP [dm6]	A	C	1.832e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	16833247	2R_16833247_SNP [dm3] 2R_20945742_SNP [dm6]	T	C	1.913e^-5	0.733	SYNONYMOUS_CODING Act57B UPSTREAM snoRNA:660	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	1666918	X_1666918_SNP [dm3] X_1772885_SNP [dm6]	A	C	1.938e^-5	0.733	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	1715954	2R_1715954_SNP [dm3] 2R_5828449_SNP [dm6]	C	T	1.949e^-5	0.733	INTRON dpr12	TF binding site mE1_TFBS_chinmo
3R	8643060	3R_8643060_SNP [dm3] 3R_12817338_SNP [dm6]	T	G	1.960e^-5	0.733	UPSTREAM CG31345 INTERGENIC
3L	9324161	3L_9324161_SNP [dm3] 3L_9331061_SNP [dm6]	A	C	2.007e^-5	0.733	INTERGENIC
2L	15097157	2L_15097157_SNP [dm3] 2L_15097157_SNP [dm6]	C	T	2.078e^-5	0.733	DOWNSTREAM CG15270 INTERGENIC
2R	14229800	2R_14229800_SNP [dm3] 2R_18342295_SNP [dm6]	G	A	2.158e^-5	0.733	INTRON sbb	TF binding site BDTNP1_TFBS_da
2L	11344259	2L_11344259_DEL [dm3] 2L_11344259_DEL [dm6]	AT	A	2.208e^-5	0.733	UPSTREAM CG14926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	8638420	3R_8638420_SNP [dm3] 3R_12812698_SNP [dm6]	T	A	2.248e^-5	0.733	INTRON CG31345
2L	13567487	2L_13567487_SNP [dm3] 2L_13567487_SNP [dm6]	T	C	2.263e^-5	0.733	INTRON kuz
3R	8638422	3R_8638422_SNP [dm3] 3R_12812700_SNP [dm6]	A	T	2.333e^-5	0.733	INTRON CG31345
3R	8640891	3R_8640891_SNP [dm3] 3R_12815169_SNP [dm6]	T	A	2.405e^-5	0.733	INTRON CG31345
3L	3182901	3L_3182901_SNP [dm3] 3L_3182901_SNP [dm6]	C	T	2.412e^-5	0.733	SYNONYMOUS_CODING Girdin
3L	2765297	3L_2765297_SNP [dm3] 3L_2765297_SNP [dm6]	T	G	2.455e^-5	0.733	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	2884827	3R_2884827_SNP [dm3] 3R_7059105_SNP [dm6]	T	A	2.512e^-5	0.733	UPSTREAM dj DOWNSTREAM CG1979 INTERGENIC	regulatory region REDfly_CRMs
3R	8650366	3R_8650366_SNP [dm3] 3R_12824644_SNP [dm6]	T	C	2.599e^-5	0.733	INTERGENIC
3R	2884857	3R_2884857_SNP [dm3] 3R_7059135_SNP [dm6]	G	C	2.635e^-5	0.733	UPSTREAM dj DOWNSTREAM CG1979 INTERGENIC	regulatory region REDfly_CRMs
3L	2765259	3L_2765259_SNP [dm3] 3L_2765259_SNP [dm6]	G	A	2.707e^-5	0.733	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	1665804	X_1665804_SNP [dm3] X_1771771_SNP [dm6]	G	C	2.726e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2765258	3L_2765258_SNP [dm3] 3L_2765258_SNP [dm6]	C	G	2.728e^-5	0.733	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3420243	2L_3420243_SNP [dm3] 2L_3420243_SNP [dm6]	T	G	2.751e^-5	0.733	INTRON pgant2
X	1667646	X_1667646_SNP [dm3] X_1773613_SNP [dm6]	C	T	2.788e^-5	0.733	UPSTREAM CG42666 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	18224181	2L_18224181_SNP [dm3] 2L_18224181_SNP [dm6]	T	C	2.792e^-5	0.733	INTRON CG42750
3L	5209960	3L_5209960_SNP [dm3] 3L_5216860_SNP [dm6]	A	G	2.838e^-5	0.733	INTRON shep
3R	8638803	3R_8638803_SNP [dm3] 3R_12813081_SNP [dm6]	G	C	2.976e^-5	0.733	INTRON CG31345
3L	15293460	3L_15293460_SNP [dm3] 3L_15300360_SNP [dm6]	A	T	2.999e^-5	0.733	DOWNSTREAM Best3 INTRON Best4
2L	7986390	2L_7986390_SNP [dm3] 2L_7986390_SNP [dm6]	C	T	3.051e^-5	0.733	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
3L	1024910	3L_1024910_SNP [dm3] 3L_1024910_SNP [dm6]	G	A	3.074e^-5	0.733	SYNONYMOUS_CODING trio	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13567489	2L_13567489_SNP [dm3] 2L_13567489_SNP [dm6]	T	A	3.087e^-5	0.733	INTRON kuz
2R	7866622	2R_7866622_SNP [dm3] 2R_11979117_SNP [dm6]	A	G	3.124e^-5	0.733	UTR_3_PRIME CG30037 UPSTREAM CG30036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5210029	3L_5210029_SNP [dm3] 3L_5216929_SNP [dm6]	A	C	3.129e^-5	0.733	INTRON shep
2R	16373745	2R_16373745_SNP [dm3] 2R_20486240_SNP [dm6]	A	T	3.234e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1449841	2L_1449841_SNP [dm3] 2L_1449841_SNP [dm6]	C	G	3.248e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	12418035	2R_12418035_SNP [dm3] 2R_16530530_SNP [dm6]	C	G	3.251e^-5	0.733	INTRON Sema-2a
3R	12198431	3R_12198431_SNP [dm3] 3R_16372709_SNP [dm6]	G	A	3.276e^-5	0.733	EXON CR45193
2L	1449807	2L_1449807_SNP [dm3] 2L_1449807_SNP [dm6]	C	A	3.278e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	8679055	3R_8679055_SNP [dm3] 3R_12853333_SNP [dm6]	C	T	3.303e^-5	0.733	INTERGENIC
2L	11762266	2L_11762266_DEL [dm3] 2L_11762266_DEL [dm6]	GC	G	3.324e^-5	0.733	INTERGENIC
3R	25957115	3R_25957115_SNP [dm3] 3R_30131393_SNP [dm6]	A	G	3.356e^-5	0.733	SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14184736	2R_14184736_SNP [dm3] 2R_18297231_SNP [dm6]	C	G	3.390e^-5	0.733	SYNONYMOUS_CODING CG18538 UPSTREAM CG18539 DOWNSTREAM CG18537 INTRON sbb
3L	5209997	3L_5209997_SNP [dm3] 3L_5216897_SNP [dm6]	A	G	3.404e^-5	0.733	INTRON shep
2L	1465016	2L_1465016_SNP [dm3] 2L_1465016_SNP [dm6]	C	T	3.473e^-5	0.733	INTERGENIC	TF binding site mE1_TFBS_D
3R	2884816	3R_2884816_DEL [dm3] 3R_7059094_DEL [dm6]	AAATAA	A	3.478e^-5	0.733	UPSTREAM dj DOWNSTREAM CG1979 INTERGENIC	regulatory region REDfly_CRMs
3R	9346418	3R_9346418_SNP [dm3] 3R_13520696_SNP [dm6]	T	C	3.562e^-5	0.733	INTERGENIC
3R	3393761	3R_3393761_SNP [dm3] 3R_7568039_SNP [dm6]	G	T	3.566e^-5	0.733	INTERGENIC
3R	3393861	3R_3393861_SNP [dm3] 3R_7568139_SNP [dm6]	T	C	3.566e^-5	0.733	INTERGENIC
2L	1449813	2L_1449813_DEL [dm3] 2L_1449813_DEL [dm6]	AAATTCTAATAT...	A	3.599e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2R	8835359	2R_8835359_SNP [dm3] 2R_12947854_SNP [dm6]	T	C	3.626e^-5	0.733	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2765982	3L_2765982_SNP [dm3] 3L_2765982_SNP [dm6]	A	G	3.672e^-5	0.733	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2R	19364076	2R_19364076_SNP [dm3] 2R_23476553_SNP [dm6]	A	T	3.747e^-5	0.733	UPSTREAM CR43792 & 1 other DOWNSTREAM CR43793 INTRON CG43795
2R	17057657	2R_17057657_SNP [dm3] 2R_21170152_SNP [dm6]	C	T	3.754e^-5	0.733	SYNONYMOUS_CODING LSm1 UPSTREAM Xpd DOWNSTREAM hng1	TF binding site BDTNP1_TFBS_dl
2R	18272025	2R_18272025_SNP [dm3] 2R_22384520_SNP [dm6]	T	A	3.760e^-5	0.733	INTRON CG13506	TF binding site mE1_TFBS_Trl
2L	3095217	2L_3095217_SNP [dm3] 2L_3095217_SNP [dm6]	C	T	3.792e^-5	0.733	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
3R	8642966	3R_8642966_SNP [dm3] 3R_12817244_SNP [dm6]	C	G	3.899e^-5	0.733	UPSTREAM CG31345 INTERGENIC
2L	1464765	2L_1464765_SNP [dm3] 2L_1464765_SNP [dm6]	A	G	4.124e^-5	0.733	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	8670290	3R_8670290_SNP [dm3] 3R_12844568_SNP [dm6]	A	G	4.151e^-5	0.733	INTRON beat-Va
3L	2771850	3L_2771850_SNP [dm3] 3L_2771850_SNP [dm6]	T	C	4.155e^-5	0.733	START_GAINED CG9977 UTR_5_PRIME CG9977 DOWNSTREAM CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	2771862	3L_2771862_SNP [dm3] 3L_2771862_SNP [dm6]	T	C	4.155e^-5	0.733	UTR_5_PRIME CG9977 DOWNSTREAM CG12093	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4133920	2L_4133920_INS [dm3] 2L_4133920_INS [dm6]	A	AGCC	4.171e^-5	0.733	INTERGENIC

Showing 1 to 100 of 1,000 entries

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GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.308e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.01309
In_3R_P	0.03066
In_3R_K	0.03041

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	5.1063	0.0778
In_3R_P	6.7233	0.0347
In_3R_K	6.1554	0.0461

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1930 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18564813	2R_18564813_SNP [dm3] 2R_22677308_SNP [dm6]	G	A	2.547e^-6	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10009741	2R_10009741_SNP [dm3] 2R_14122236_SNP [dm6]	A	G	3.165e^-6	0.82	INTRON Prosap
X	3291422	X_3291422_SNP [dm3] X_3397389_SNP [dm6]	T	A	5.295e^-6	0.82	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12982733	2R_12982733_SNP [dm3] 2R_17095228_SNP [dm6]	T	A	5.496e^-6	0.82	INTRON GstS1	TF binding site mE1_TFBS_cad
2L	1465048	2L_1465048_SNP [dm3] 2L_1465048_SNP [dm6]	T	C	5.589e^-6	0.82	INTERGENIC	TF binding site mE1_TFBS_D
3L	8009091	3L_8009091_SNP [dm3] 3L_8015991_SNP [dm6]	T	C	8.906e^-6	0.82	INTRON nmo
X	8966291	X_8966291_SNP [dm3] X_9072258_SNP [dm6]	G	T	8.908e^-6	0.82	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
3R	24304904	3R_24304904_SNP [dm3] 3R_28479182_SNP [dm6]	C	A	9.169e^-6	0.82	INTERGENIC
2L	11866755	2L_11866755_SNP [dm3] 2L_11866755_SNP [dm6]	C	G	9.590e^-6	0.82	INTRON Pde1c
2L	5508550	2L_5508550_SNP [dm3] 2L_5508550_SNP [dm6]	G	C	9.647e^-6	0.82	INTERGENIC
2L	6318062	2L_6318062_SNP [dm3] 2L_6318062_SNP [dm6]	C	A	1.009e^-5	0.82	INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8966295	X_8966295_SNP [dm3] X_9072262_SNP [dm6]	A	G	1.019e^-5	0.82	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
3R	24304806	3R_24304806_SNP [dm3] 3R_28479084_SNP [dm6]	T	C	1.039e^-5	0.82	INTERGENIC
3R	24655910	3R_24655910_SNP [dm3] 3R_28830188_SNP [dm6]	A	T	1.174e^-5	0.82	INTRON WASp
2L	7259478	2L_7259478_SNP [dm3] 2L_7259478_SNP [dm6]	A	G	1.209e^-5	0.82	INTRON Wnt4
2L	1453105	2L_1453105_SNP [dm3] 2L_1453105_SNP [dm6]	G	A	1.214e^-5	0.82	INTERGENIC
X	18842984	X_18842984_SNP [dm3] X_18948951_SNP [dm6]	C	T	1.231e^-5	0.82	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	16763133	2L_16763133_SNP [dm3] 2L_16763133_SNP [dm6]	G	T	1.261e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6356953	3L_6356953_DEL [dm3] 3L_6363853_DEL [dm6]	TT	T	1.281e^-5	0.82	INTERGENIC
2L	19252673	2L_19252673_SNP [dm3] 2L_19252673_SNP [dm6]	T	C	1.297e^-5	0.82	INTERGENIC
3L	3757249	3L_3757249_SNP [dm3] 3L_3757249_SNP [dm6]	T	A	1.307e^-5	0.82	INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	13117377	2L_13117377_SNP [dm3] 2L_13117377_SNP [dm6]	T	A	1.328e^-5	0.82	INTERGENIC
X	17576991	X_17576991_SNP [dm3] X_17682958_SNP [dm6]	C	T	1.331e^-5	0.82	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3313892	2L_3313892_SNP [dm3] 2L_3313892_SNP [dm6]	A	T	1.383e^-5	0.82	INTRON CG3277
3R	24305506	3R_24305506_SNP [dm3] 3R_28479784_SNP [dm6]	A	T	1.448e^-5	0.82	INTERGENIC
2L	8979189	2L_8979189_SNP [dm3] 2L_8979189_SNP [dm6]	C	T	1.483e^-5	0.82	INTRON CG13101
3R	7711955	3R_7711955_SNP [dm3] 3R_11886233_SNP [dm6]	A	G	1.521e^-5	0.82	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2R	9251776	2R_9251776_SNP [dm3] 2R_13364271_SNP [dm6]	G	T	1.582e^-5	0.82	INTERGENIC
2L	5631702	2L_5631702_SNP [dm3] 2L_5631702_SNP [dm6]	C	T	1.584e^-5	0.82	INTRON CG31646 EXON CR44822
3L	6224359	3L_6224359_SNP [dm3] 3L_6231259_SNP [dm6]	C	T	1.630e^-5	0.82	DOWNSTREAM CG13299 INTERGENIC
2L	13920021	2L_13920021_SNP [dm3] 2L_13920021_SNP [dm6]	C	G	1.632e^-5	0.82	DOWNSTREAM CG16886 INTRON Ance-3
3R	23482833	3R_23482833_SNP [dm3] 3R_27657111_SNP [dm6]	C	A	1.635e^-5	0.82	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
2L	6311301	2L_6311301_SNP [dm3] 2L_6311301_SNP [dm6]	G	A	1.652e^-5	0.82	INTRON Ddr
2L	15331475	2L_15331475_SNP [dm3] 2L_15331475_SNP [dm6]	C	T	1.676e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12340368	2L_12340368_SNP [dm3] 2L_12340368_SNP [dm6]	G	A	1.683e^-5	0.82	DOWNSTREAM CG31862 INTERGENIC
2L	10892013	2L_10892013_SNP [dm3] 2L_10892013_SNP [dm6]	C	T	1.684e^-5	0.82	INTERGENIC
2L	1464957	2L_1464957_SNP [dm3] 2L_1464957_SNP [dm6]	C	A	1.729e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	12340371	2L_12340371_SNP [dm3] 2L_12340371_SNP [dm6]	A	T	1.760e^-5	0.82	DOWNSTREAM CG31862 INTERGENIC
3L	9518219	3L_9518219_SNP [dm3] 3L_9525119_SNP [dm6]	C	T	1.797e^-5	0.82	INTRON CG33700
2L	1470930	2L_1470930_SNP [dm3] 2L_1470930_SNP [dm6]	G	C	1.800e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19354583	2R_19354583_SNP [dm3] 2R_23467060_SNP [dm6]	G	C	1.911e^-5	0.82	SYNONYMOUS_CODING CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1465016	2L_1465016_SNP [dm3] 2L_1465016_SNP [dm6]	C	T	1.952e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_D
2L	1470923	2L_1470923_SNP [dm3] 2L_1470923_SNP [dm6]	A	T	2.025e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	18566287	2R_18566287_SNP [dm3] 2R_22678782_SNP [dm6]	T	A	2.044e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9251755	2R_9251755_DEL [dm3] 2R_13364250_DEL [dm6]	CC	C	2.181e^-5	0.82	INTERGENIC
3L	12822303	3L_12822303_SNP [dm3] 3L_12829203_SNP [dm6]	T	C	2.215e^-5	0.82	INTRON CG10960
3L	11551149	3L_11551149_INS [dm3] 3L_11558049_INS [dm6]	A	TTTTTT	2.217e^-5	0.82	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	22670805	3R_22670805_SNP [dm3] 3R_26845083_SNP [dm6]	C	T	2.247e^-5	0.82	INTRON Lerp
3R	7711997	3R_7711997_SNP [dm3] 3R_11886275_SNP [dm6]	T	A	2.266e^-5	0.82	INTRON CG31368 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	3313890	2L_3313890_SNP [dm3] 2L_3313890_SNP [dm6]	T	G	2.279e^-5	0.82	INTRON CG3277
3L	11548657	3L_11548657_SNP [dm3] 3L_11555557_SNP [dm6]	G	A	2.298e^-5	0.82	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	7710425	3R_7710425_SNP [dm3] 3R_11884703_SNP [dm6]	A	G	2.312e^-5	0.82	SYNONYMOUS_CODING mthl5 INTRON CG31368
3L	19334307	3L_19334307_SNP [dm3] 3L_19341207_SNP [dm6]	C	A	2.366e^-5	0.82	UTR_3_PRIME CG32206
2L	4936856	2L_4936856_SNP [dm3] 2L_4936856_SNP [dm6]	A	T	2.445e^-5	0.82	UPSTREAM Sgs1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	8979245	2L_8979245_SNP [dm3] 2L_8979245_SNP [dm6]	G	A	2.497e^-5	0.82	INTRON CG13101
2L	5631712	2L_5631712_SNP [dm3] 2L_5631712_SNP [dm6]	C	T	2.522e^-5	0.82	INTRON CG31646 EXON CR44822
2R	13775531	2R_13775531_DEL [dm3] 2R_17888026_DEL [dm6]	AAATACCAAAATATTA...	A	2.533e^-5	0.82	INTRON Elk & 1 other
X	3291418	X_3291418_SNP [dm3] X_3397385_SNP [dm6]	C	T	2.662e^-5	0.82	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5508542	2L_5508542_SNP [dm3] 2L_5508542_SNP [dm6]	A	C	2.734e^-5	0.82	INTERGENIC
2L	5922582	2L_5922582_DEL [dm3] 2L_5922582_DEL [dm6]	GTTAGTGC	G	2.766e^-5	0.82	UTR_3_PRIME bchs DOWNSTREAM CG9016
2R	18565434	2R_18565434_DEL [dm3] 2R_22677929_DEL [dm6]	ACATTTTTAATTTCTTAGTT...	A	2.775e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19034008	2R_19034008_SNP [dm3] 2R_23146485_SNP [dm6]	C	T	2.847e^-5	0.82	INTERGENIC
2L	6490998	2L_6490998_SNP [dm3] 2L_6490998_SNP [dm6]	T	C	2.887e^-5	0.82	UPSTREAM CG31638 & 1 other DOWNSTREAM epsilonCOP INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1464982	2L_1464982_SNP [dm3] 2L_1464982_SNP [dm6]	A	G	2.955e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	1464943	2L_1464943_SNP [dm3] 2L_1464943_SNP [dm6]	A	C	2.998e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	3313867	2L_3313867_SNP [dm3] 2L_3313867_SNP [dm6]	A	T	3.032e^-5	0.82	INTRON CG3277
3L	12850965	3L_12850965_INS [dm3] 3L_12857865_INS [dm6]	C	CC	3.036e^-5	0.82	UTR_3_PRIME CG32107 DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
3L	6356943	3L_6356943_SNP [dm3] 3L_6363843_SNP [dm6]	A	T	3.107e^-5	0.82	INTERGENIC
2L	6338717	2L_6338717_SNP [dm3] 2L_6338717_SNP [dm6]	G	A	3.166e^-5	0.82	UPSTREAM Cpr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8979093	2L_8979093_INS [dm3] 2L_8979093_INS [dm6]	A	ATACAA	3.184e^-5	0.82	INTRON CG13101
3R	21356866	3R_21356866_SNP [dm3] 3R_25531144_SNP [dm6]	C	T	3.256e^-5	0.82	INTRON msi
3R	7816894	3R_7816894_SNP [dm3] 3R_11991172_SNP [dm6]	A	G	3.389e^-5	0.82	INTRON mfas
2L	1844748	2L_1844748_SNP [dm3] 2L_1844748_SNP [dm6]	A	C	3.407e^-5	0.82	INTRON wry
3L	6356935	3L_6356935_SNP [dm3] 3L_6363835_SNP [dm6]	T	G	3.463e^-5	0.82	INTERGENIC
3R	7712863	3R_7712863_SNP [dm3] 3R_11887141_SNP [dm6]	T	A	3.472e^-5	0.82	UTR_5_PRIME mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7771567	3R_7771567_SNP [dm3] 3R_11945845_SNP [dm6]	C	G	3.538e^-5	0.82	INTRON Cad87A
3L	1717786	3L_1717786_SNP [dm3] 3L_1717786_SNP [dm6]	T	A	3.558e^-5	0.82	NON_SYNONYMOUS_CODING drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9867176	2R_9867176_DEL [dm3] 2R_13979671_DEL [dm6]	GTTG	G	3.630e^-5	0.82	UTR_5_PRIME CG6701 UPSTREAM CG6701 DOWNSTREAM Ctf4 INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19283216	2L_19283216_SNP [dm3] 2L_19283216_SNP [dm6]	C	A	3.652e^-5	0.82	INTERGENIC
3R	9244987	3R_9244987_DEL [dm3] 3R_13419265_DEL [dm6]	TA	T	3.674e^-5	0.82	INTERGENIC
2L	16356056	2L_16356056_SNP [dm3] 2L_16356056_SNP [dm6]	C	T	3.784e^-5	0.82	NON_SYNONYMOUS_CODING CaBP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	1470935	2L_1470935_SNP [dm3] 2L_1470935_SNP [dm6]	C	G	3.789e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
X	8966284	X_8966284_SNP [dm3] X_9072251_SNP [dm6]	C	A	3.805e^-5	0.82	UPSTREAM CG10970 DOWNSTREAM CG44325 INTRON CG44325
X	12915549	X_12915549_SNP [dm3] X_13021516_SNP [dm6]	C	G	3.887e^-5	0.82	UPSTREAM CG2209 INTRON rad
3R	24655952	3R_24655952_SNP [dm3] 3R_28830230_SNP [dm6]	G	T	3.906e^-5	0.82	INTRON WASp
3R	23201884	3R_23201884_SNP [dm3] 3R_27376162_SNP [dm6]	C	T	3.916e^-5	0.82	UTR_3_PRIME side
2L	1465104	2L_1465104_SNP [dm3] 2L_1465104_SNP [dm6]	A	G	3.968e^-5	0.82	INTERGENIC	TF binding site mE1_TFBS_D
3R	3222190	3R_3222190_SNP [dm3] 3R_7396468_SNP [dm6]	A	C	4.041e^-5	0.82	INTERGENIC
3R	12243902	3R_12243902_SNP [dm3] 3R_16418180_SNP [dm6]	C	A	4.271e^-5	0.82	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	6356972	3L_6356972_SNP [dm3] 3L_6363872_SNP [dm6]	C	G	4.300e^-5	0.82	INTERGENIC
2R	18564962	2R_18564962_SNP [dm3] 2R_22677457_SNP [dm6]	G	T	4.328e^-5	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7116050	3R_7116050_SNP [dm3] 3R_11290328_SNP [dm6]	G	T	4.344e^-5	0.82	INTRON CR31386
3L	1717626	3L_1717626_SNP [dm3] 3L_1717626_SNP [dm6]	G	A	4.407e^-5	0.82	SYNONYMOUS_CODING drpr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4936895	2L_4936895_SNP [dm3] 2L_4936895_SNP [dm6]	C	A	4.531e^-5	0.82	UPSTREAM Sgs1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	6342486	2L_6342486_SNP [dm3] 2L_6342486_SNP [dm6]	A	G	4.568e^-5	0.82	INTRON Cpr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7753585	3R_7753585_SNP [dm3] 3R_11927863_SNP [dm6]	C	T	4.614e^-5	0.82	INTRON Cad87A
2R	16354065	2R_16354065_SNP [dm3] 2R_20466560_SNP [dm6]	G	A	4.667e^-5	0.82	INTRON CG12484
2L	3333554	2L_3333554_SNP [dm3] 2L_3333554_SNP [dm6]	T	C	4.769e^-5	0.82	DOWNSTREAM CG3285 INTRON CG15408	TF binding site mE1_TFBS_cad
2R	19034024	2R_19034024_SNP [dm3] 2R_23146501_SNP [dm6]	C	T	4.801e^-5	0.82	INTERGENIC
2R	7753768	2R_7753768_SNP [dm3] 2R_11866263_SNP [dm6]	A	G	4.840e^-5	0.82	SPLICE_SITE_REGION Damm UPSTREAM CR42532 INTRON Damm

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By genomic position
Variant impact
Gene name

sd_Lifespan_Env_25 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results