DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.881e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02258

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.6346	0.0598

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2402 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17190062	2R_17190062_SNP [dm3] 2R_21302557_SNP [dm6]	A	G	6.595e^-7	0.531	INTRON CG42672
2R	17190805	2R_17190805_SNP [dm3] 2R_21303300_SNP [dm6]	T	A	7.048e^-7	0.531	INTRON CG42672
X	16849902	X_16849902_SNP [dm3] X_16955869_SNP [dm6]	C	G	8.496e^-7	0.531	UTR_3_PRIME RhoGAP15B DOWNSTREAM CG9086	TF binding site mE1_TFBS_inv
2R	2693966	2R_2693966_DEL [dm3] 2R_6806461_DEL [dm6]	CCA	C	1.813e^-6	0.57	INTERGENIC	insulator Insulator_Class_II.mE01
3R	16906527	3R_16906527_SNP [dm3] 3R_21080805_SNP [dm6]	T	C	1.887e^-6	0.57	UTR_5_PRIME HHEX	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19182165	3R_19182165_SNP [dm3] 3R_23356443_SNP [dm6]	A	C	1.953e^-6	0.57	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	17625328	2R_17625328_SNP [dm3] 2R_21737823_SNP [dm6]	C	G	3.367e^-6	0.57	INTERGENIC
2L	1010540	2L_1010540_DEL [dm3] 2L_1010540_DEL [dm6]	GTTTTGG	G	3.545e^-6	0.57	UTR_3_PRIME IA-2 DOWNSTREAM IA-2
3R	10180553	3R_10180553_SNP [dm3] 3R_14354831_SNP [dm6]	T	G	3.858e^-6	0.57	INTRON NK7.1
3R	16503471	3R_16503471_SNP [dm3] 3R_20677749_SNP [dm6]	A	T	4.417e^-6	0.57	UPSTREAM CR43452 & 1 other INTRON CR45024
3R	3004574	3R_3004574_SNP [dm3] 3R_7178852_SNP [dm6]	G	C	4.682e^-6	0.57	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19182123	3R_19182123_SNP [dm3] 3R_23356401_SNP [dm6]	C	T	4.938e^-6	0.57	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8350802	2R_8350802_SNP [dm3] 2R_12463297_SNP [dm6]	T	G	5.470e^-6	0.57	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2L	6768342	2L_6768342_SNP [dm3] 2L_6768342_SNP [dm6]	C	T	5.618e^-6	0.57	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17190808	2R_17190808_SNP [dm3] 2R_21303303_SNP [dm6]	T	C	5.671e^-6	0.57	INTRON CG42672
3R	2691948	3R_2691948_SNP [dm3] 3R_6866226_SNP [dm6]	A	G	6.935e^-6	0.57	UTR_3_PRIME ftz	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19182125	3R_19182125_SNP [dm3] 3R_23356403_SNP [dm6]	C	G	7.106e^-6	0.57	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17625338	2R_17625338_SNP [dm3] 2R_21737833_SNP [dm6]	C	T	7.503e^-6	0.57	INTERGENIC
3R	16906270	3R_16906270_SNP [dm3] 3R_21080548_SNP [dm6]	T	A	8.066e^-6	0.57	NON_SYNONYMOUS_CODING HHEX	TF binding site mE1_TFBS_chinmo
3R	4748028	3R_4748028_SNP [dm3] 3R_8922306_SNP [dm6]	A	C	9.617e^-6	0.57	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1452526	X_1452526_SNP [dm3] X_1558493_SNP [dm6]	G	A	9.885e^-6	0.57	UTR_5_PRIME Mur2B UPSTREAM snmRNA:400	TF binding site mE1_TFBS_chinmo
3R	25128730	3R_25128730_SNP [dm3] 3R_29303008_SNP [dm6]	C	T	9.981e^-6	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12474512	2R_12474512_SNP [dm3] 2R_16587007_SNP [dm6]	G	A	1.013e^-5	0.57	DOWNSTREAM CG8311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10239946	3L_10239946_SNP [dm3] 3L_10246846_SNP [dm6]	A	T	1.022e^-5	0.57	DOWNSTREAM CR44540 EXON CR44539	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23151887	3R_23151887_SNP [dm3] 3R_27326165_SNP [dm6]	A	G	1.052e^-5	0.57	INTERGENIC
X	20962884	X_20962884_SNP [dm3] X_21091857_SNP [dm6]	G	A	1.091e^-5	0.57	INTERGENIC
2L	2124857	2L_2124857_SNP [dm3] 2L_2124857_SNP [dm6]	C	A	1.091e^-5	0.57	INTERGENIC
2R	3742670	2R_3742670_SNP [dm3] 2R_7855165_SNP [dm6]	T	C	1.097e^-5	0.57	INTRON Dgk
3R	2615677	3R_2615677_SNP [dm3] 3R_6789955_SNP [dm6]	G	A	1.129e^-5	0.57	INTERGENIC
3R	23591589	3R_23591589_SNP [dm3] 3R_27765867_SNP [dm6]	A	G	1.138e^-5	0.57	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11354944	2L_11354944_SNP [dm3] 2L_11354944_SNP [dm6]	G	A	1.205e^-5	0.57	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
3L	12032493	3L_12032493_SNP [dm3] 3L_12039393_SNP [dm6]	T	C	1.329e^-5	0.57	INTRON rols	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19143909	2R_19143909_SNP [dm3] 2R_23256386_SNP [dm6]	T	C	1.342e^-5	0.57	INTERGENIC
2L	4250784	2L_4250784_SNP [dm3] 2L_4250784_SNP [dm6]	G	T	1.387e^-5	0.57	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6768276	2L_6768276_SNP [dm3] 2L_6768276_SNP [dm6]	A	G	1.388e^-5	0.57	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3005087	3R_3005087_SNP [dm3] 3R_7179365_SNP [dm6]	T	C	1.421e^-5	0.57	INTRON sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12580390	3L_12580390_SNP [dm3] 3L_12587290_SNP [dm6]	T	A	1.462e^-5	0.57	INTRON ara
X	20423618	X_20423618_INS [dm3] X_20552591_INS [dm6]	T	TGT	1.528e^-5	0.57	INTRON RunxB
3R	11682530	3R_11682530_SNP [dm3] 3R_15856808_SNP [dm6]	A	G	1.546e^-5	0.57	SYNONYMOUS_CODING Hmt-1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	22136463	3L_22136463_SNP [dm3] 3L_22143363_SNP [dm6]	T	A	1.563e^-5	0.57	INTRON olf413	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3413153	2L_3413153_DEL [dm3] 2L_3413153_DEL [dm6]	GTGCCCGAAGGCCCAG...	G	1.587e^-5	0.57	INTRON pgant2
3R	17048509	3R_17048509_SNP [dm3] 3R_21222787_SNP [dm6]	C	G	1.626e^-5	0.57	UTR_3_PRIME Oga UPSTREAM Nelf-A DOWNSTREAM CG3337 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2L	7258581	2L_7258581_SNP [dm3] 2L_7258581_SNP [dm6]	T	C	1.655e^-5	0.57	DOWNSTREAM CG31909 INTRON Wnt4	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	25081143	3R_25081143_SNP [dm3] 3R_29255421_SNP [dm6]	T	C	1.737e^-5	0.57	UTR_5_PRIME stg UPSTREAM stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	8584266	2R_8584266_SNP [dm3] 2R_12696761_SNP [dm6]	T	A	1.742e^-5	0.57	INTERGENIC
3L	16872555	3L_16872555_SNP [dm3] 3L_16879455_SNP [dm6]	A	C	1.746e^-5	0.57	DOWNSTREAM CG32170 INTRON Lmpt
X	1447049	X_1447049_SNP [dm3] X_1553016_SNP [dm6]	T	G	1.780e^-5	0.57	NON_SYNONYMOUS_CODING Mur2B INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	17474333	3L_17474333_SNP [dm3] 3L_17481233_SNP [dm6]	G	T	1.780e^-5	0.57	START_GAINED CG6333 UTR_5_PRIME CG6333 INTRON CG6333
3R	9331061	3R_9331061_SNP [dm3] 3R_13505339_SNP [dm6]	C	G	1.797e^-5	0.57	INTERGENIC
2R	19185355	2R_19185355_SNP [dm3] 2R_23297832_SNP [dm6]	G	A	1.805e^-5	0.57	INTERGENIC
3L	13483184	3L_13483184_SNP [dm3] 3L_13490084_SNP [dm6]	G	A	1.820e^-5	0.57	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	2839909	3R_2839909_SNP [dm3] 3R_7014187_SNP [dm6]	G	A	1.838e^-5	0.57	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11999539	3L_11999539_SNP [dm3] 3L_12006439_SNP [dm6]	C	A	1.865e^-5	0.57	INTRON CG6928
2L	4250952	2L_4250952_SNP [dm3] 2L_4250952_SNP [dm6]	C	G	1.882e^-5	0.57	INTERGENIC
3R	9414756	3R_9414756_SNP [dm3] 3R_13589034_SNP [dm6]	T	G	1.915e^-5	0.57	DOWNSTREAM CG14370 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	3222190	3R_3222190_SNP [dm3] 3R_7396468_SNP [dm6]	A	C	1.995e^-5	0.57	INTERGENIC
X	4587899	X_4587899_SNP [dm3] X_4693866_SNP [dm6]	G	C	2.056e^-5	0.57	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	9572757	X_9572757_SNP [dm3] X_9678724_SNP [dm6]	T	G	2.071e^-5	0.57	SYNONYMOUS_CODING nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	22382701	3L_22382701_DEL [dm3] 3L_22389601_DEL [dm6]	AA	T	2.081e^-5	0.57	INTRON Ten-m	TF binding site mE1_TFBS_HSA
3L	22391631	3L_22391631_SNP [dm3] 3L_22398531_SNP [dm6]	T	C	2.081e^-5	0.57	INTRON Ten-m	TF binding site BDTNP1_TFBS_da
3L	10010872	3L_10010872_SNP [dm3] 3L_10017772_SNP [dm6]	G	T	2.106e^-5	0.57	INTRON dpr6
3L	16144827	3L_16144827_SNP [dm3] 3L_16151727_SNP [dm6]	A	T	2.111e^-5	0.57	INTRON CG5151
3L	22193966	3L_22193966_SNP [dm3] 3L_22200866_SNP [dm6]	C	A	2.112e^-5	0.57	INTRON olf413
X	4421811	X_4421811_SNP [dm3] X_4527778_SNP [dm6]	T	A	2.148e^-5	0.57	INTRON CR32773
2R	19143891	2R_19143891_SNP [dm3] 2R_23256368_SNP [dm6]	T	A	2.151e^-5	0.57	INTERGENIC
2L	6420681	2L_6420681_SNP [dm3] 2L_6420681_SNP [dm6]	G	T	2.207e^-5	0.57	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14906328	3R_14906328_SNP [dm3] 3R_19080606_SNP [dm6]	C	A	2.213e^-5	0.57	INTRON cdi
3L	22156733	3L_22156733_DEL [dm3] 3L_22163633_DEL [dm6]	ACATTTTCTTTGGCCCACTC...	A	2.226e^-5	0.57	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22305066	3L_22305066_SNP [dm3] 3L_22311966_SNP [dm6]	A	G	2.226e^-5	0.57	INTRON Ten-m
2R	11152294	2R_11152294_SNP [dm3] 2R_15264789_SNP [dm6]	A	T	2.249e^-5	0.57	INTRON Trpm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24050876	3R_24050876_SNP [dm3] 3R_28225154_SNP [dm6]	A	G	2.260e^-5	0.57	INTRON CG34354	TF binding site mE1_TFBS_HSA
3R	2609787	3R_2609787_SNP [dm3] 3R_6784065_SNP [dm6]	T	A	2.265e^-5	0.57	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26916933	3R_26916933_SNP [dm3] 3R_31091211_SNP [dm6]	T	C	2.299e^-5	0.57	UTR_3_PRIME CG11317
3L	17693094	3L_17693094_SNP [dm3] 3L_17699994_SNP [dm6]	T	C	2.303e^-5	0.57	INTRON Ccn
2L	9511970	2L_9511970_DEL [dm3] 2L_9511970_DEL [dm6]	AA	A	2.346e^-5	0.57	INTRON CG33298	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	6770573	2L_6770573_SNP [dm3] 2L_6770573_SNP [dm6]	A	T	2.390e^-5	0.57	INTRON CG11321
2R	13505496	2R_13505496_SNP [dm3] 2R_17617991_SNP [dm6]	G	T	2.394e^-5	0.57	UPSTREAM CG44403 INTRON CG10936
3R	15749997	3R_15749997_SNP [dm3] 3R_19924275_SNP [dm6]	A	C	2.442e^-5	0.57	INTRON CG4462
3R	3004559	3R_3004559_SNP [dm3] 3R_7178837_SNP [dm6]	G	A	2.455e^-5	0.57	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12580396	3L_12580396_DEL [dm3] 3L_12587296_DEL [dm6]	AT	A	2.477e^-5	0.57	INTRON ara
3L	22196644	3L_22196644_SNP [dm3] 3L_22203544_SNP [dm6]	G	A	2.567e^-5	0.57	INTRON olf413
2L	6768583	2L_6768583_SNP [dm3] 2L_6768583_SNP [dm6]	C	T	2.608e^-5	0.57	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
3L	18594882	3L_18594882_SNP [dm3] 3L_18601782_SNP [dm6]	T	G	2.632e^-5	0.57	NON_SYNONYMOUS_CODING CG4174 UTR_3_PRIME CG13380
2R	19143908	2R_19143908_SNP [dm3] 2R_23256385_SNP [dm6]	G	T	2.646e^-5	0.57	INTERGENIC
3L	19025430	3L_19025430_SNP [dm3] 3L_19032330_SNP [dm6]	T	A	2.665e^-5	0.57	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	1450564	X_1450564_SNP [dm3] X_1556531_SNP [dm6]	G	T	2.722e^-5	0.57	NON_SYNONYMOUS_CODING Mur2B
3R	15749910	3R_15749910_SNP [dm3] 3R_19924188_SNP [dm6]	A	G	2.725e^-5	0.57	INTRON CG4462
3L	22270316	3L_22270316_SNP [dm3] 3L_22277216_SNP [dm6]	A	T	2.742e^-5	0.57	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad
2R	6920273	2R_6920273_SNP [dm3] 2R_11032768_SNP [dm6]	C	A	2.745e^-5	0.57	INTRON luna
3L	22157429	3L_22157429_SNP [dm3] 3L_22164329_SNP [dm6]	T	C	2.763e^-5	0.57	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	22182115	3L_22182115_SNP [dm3] 3L_22189015_SNP [dm6]	G	A	2.763e^-5	0.57	INTRON olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1580245	2L_1580245_SNP [dm3] 2L_1580245_SNP [dm6]	G	A	2.828e^-5	0.572	INTRON haf
2L	4267145	2L_4267145_SNP [dm3] 2L_4267145_SNP [dm6]	T	C	2.837e^-5	0.572	INTERGENIC
3R	3245209	3R_3245209_SNP [dm3] 3R_7419487_SNP [dm6]	G	T	2.952e^-5	0.583	NON_SYNONYMOUS_CODING CG31544 UPSTREAM CG34023
2R	14018530	2R_14018530_SNP [dm3] 2R_18131025_SNP [dm6]	T	C	2.955e^-5	0.583	SYNONYMOUS_CODING Hsf DOWNSTREAM Dip3
3R	19181879	3R_19181879_SNP [dm3] 3R_23356157_SNP [dm6]	C	T	3.096e^-5	0.605	UPSTREAM Sec13 & 1 other DOWNSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	3500989	2L_3500989_SNP [dm3] 2L_3500989_SNP [dm6]	G	A	3.154e^-5	0.607	DOWNSTREAM tim INTRON tim
3R	14906389	3R_14906389_DEL [dm3] 3R_19080667_DEL [dm6]	CC	C	3.185e^-5	0.607	INTRON cdi
X	1450567	X_1450567_SNP [dm3] X_1556534_SNP [dm6]	A	G	3.202e^-5	0.607	NON_SYNONYMOUS_CODING Mur2B
X	6808505	X_6808505_SNP [dm3] X_6914472_SNP [dm6]	G	A	3.319e^-5	0.622	INTRON CG14431	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18155052	3L_18155052_SNP [dm3] 3L_18161952_SNP [dm6]	A	T	3.352e^-5	0.622	INTRON CG13699
3L	11921293	3L_11921293_SNP [dm3] 3L_11928193_SNP [dm6]	A	G	3.396e^-5	0.624	INTRON CG44837 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16906287	3R_16906287_SNP [dm3] 3R_21080565_SNP [dm6]	A	C	3.460e^-5	0.625	NON_SYNONYMOUS_CODING HHEX	TF binding site mE1_TFBS_chinmo
3L	16863314	3L_16863314_SNP [dm3] 3L_16870214_SNP [dm6]	A	G	3.491e^-5	0.625	INTRON Lmpt
3L	18155170	3L_18155170_SNP [dm3] 3L_18162070_SNP [dm6]	C	A	3.498e^-5	0.625	INTRON CG13699
2L	7258297	2L_7258297_SNP [dm3] 2L_7258297_SNP [dm6]	G	A	3.555e^-5	0.626	DOWNSTREAM CG31909 INTRON Wnt4	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	1739164	2R_1739164_SNP [dm3] 2R_5851659_SNP [dm6]	C	T	3.571e^-5	0.626	INTRON dpr12
3L	22256581	3L_22256581_SNP [dm3] 3L_22263481_SNP [dm6]	A	C	3.819e^-5	0.661	UTR_5_PRIME Ddx1 UPSTREAM Rich	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18157926	3L_18157926_SNP [dm3] 3L_18164826_SNP [dm6]	G	A	3.875e^-5	0.661	INTERGENIC
3R	2679512	3R_2679512_SNP [dm3] 3R_6853790_SNP [dm6]	G	A	3.898e^-5	0.661	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	876635	3L_876635_SNP [dm3] 3L_876635_SNP [dm6]	G	T	4.047e^-5	0.661	DOWNSTREAM CG13907 INTRON CG32479	TF binding site mE1_TFBS_sens
2R	15779915	2R_15779915_SNP [dm3] 2R_19892410_SNP [dm6]	T	G	4.070e^-5	0.661	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9997242	3R_9997242_SNP [dm3] 3R_14171520_SNP [dm6]	G	A	4.071e^-5	0.661	UTR_3_PRIME Dop1R1
3L	22154467	3L_22154467_SNP [dm3] 3L_22161367_SNP [dm6]	A	G	4.102e^-5	0.661	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25065444	3R_25065444_SNP [dm3] 3R_29239722_SNP [dm6]	T	C	4.116e^-5	0.661	SYNONYMOUS_CODING CG31427 DOWNSTREAM CG31445
3R	20251254	3R_20251254_SNP [dm3] 3R_24425532_SNP [dm6]	T	C	4.165e^-5	0.661	INTRON nAChRalpha1
2L	15114532	2L_15114532_SNP [dm3] 2L_15114532_SNP [dm6]	C	T	4.206e^-5	0.661	NON_SYNONYMOUS_CODING stc	TF binding site mE1_TFBS_sens
3L	16232919	3L_16232919_SNP [dm3] 3L_16239819_SNP [dm6]	C	A	4.278e^-5	0.661	DOWNSTREAM l_3_72Dr INTERGENIC
3R	15749990	3R_15749990_SNP [dm3] 3R_19924268_SNP [dm6]	C	T	4.322e^-5	0.661	INTRON CG4462
2L	2110931	2L_2110931_SNP [dm3] 2L_2110931_SNP [dm6]	T	A	4.370e^-5	0.661	INTERGENIC	TF binding site mE1_TFBS_bab1
X	7127838	X_7127838_DEL [dm3] X_7233805_DEL [dm6]	AA	A	4.411e^-5	0.661	INTRON CR44357 & 1 other
3R	4752688	3R_4752688_SNP [dm3] 3R_8926966_SNP [dm6]	T	A	4.434e^-5	0.661	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6768261	2L_6768261_SNP [dm3] 2L_6768261_SNP [dm6]	G	T	4.437e^-5	0.661	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22195276	3L_22195276_SNP [dm3] 3L_22202176_SNP [dm6]	C	G	4.576e^-5	0.661	INTRON olf413
3R	19386774	3R_19386774_DEL [dm3] 3R_23561052_DEL [dm6]	TT	T	4.621e^-5	0.661	INTRON beat-IV	TF binding site mE1_TFBS_inv
2R	12797538	2R_12797538_SNP [dm3] 2R_16910033_SNP [dm6]	T	G	4.625e^-5	0.661	INTERGENIC
3L	12611730	3L_12611730_SNP [dm3] 3L_12618630_SNP [dm6]	T	C	4.642e^-5	0.661	SYNONYMOUS_CODING caup
2L	2110932	2L_2110932_SNP [dm3] 2L_2110932_SNP [dm6]	T	C	4.661e^-5	0.661	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	2110938	2L_2110938_SNP [dm3] 2L_2110938_SNP [dm6]	T	C	4.668e^-5	0.661	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	18340088	2L_18340088_SNP [dm3] 2L_18340088_SNP [dm6]	T	A	4.736e^-5	0.661	INTRON Fas3
2R	11866305	2R_11866305_SNP [dm3] 2R_15978800_SNP [dm6]	A	T	4.836e^-5	0.661	SYNONYMOUS_CODING Strn-Mlck
3L	22473434	3L_22473434_SNP [dm3] 3L_22480334_SNP [dm6]	C	A	4.873e^-5	0.661	INTERGENIC	TF binding site mE1_TFBS_inv
X	4875783	X_4875783_SNP [dm3] X_4981750_SNP [dm6]	C	T	4.879e^-5	0.661	INTRON CR44833
3R	23190683	3R_23190683_SNP [dm3] 3R_27364961_SNP [dm6]	C	T	4.892e^-5	0.661	INTRON CG42534
3L	12311251	3L_12311251_DEL [dm3] 3L_12318151_DEL [dm6]	AT	A	4.939e^-5	0.661	INTERGENIC
3R	15750002	3R_15750002_SNP [dm3] 3R_19924280_SNP [dm6]	T	C	4.939e^-5	0.661	INTRON CG4462
3R	25448806	3R_25448806_SNP [dm3] 3R_29623084_SNP [dm6]	A	T	4.945e^-5	0.661	INTERGENIC
X	21328526	X_21328526_SNP [dm3] X_21457499_SNP [dm6]	A	G	4.960e^-5	0.661	UTR_5_PRIME CG42343 INTRON CG42343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	11582034	3R_11582034_SNP [dm3] 3R_15756312_SNP [dm6]	G	A	4.990e^-5	0.661	INTERGENIC
3L	22159403	3L_22159403_SNP [dm3] 3L_22166303_SNP [dm6]	A	C	5.025e^-5	0.661	INTRON olf413
2L	3413067	2L_3413067_DEL [dm3] 2L_3413067_DEL [dm6]	TCA	T	5.028e^-5	0.661	INTRON pgant2
3R	13277117	3R_13277117_SNP [dm3] 3R_17451395_SNP [dm6]	T	C	5.063e^-5	0.661	INTERGENIC
3L	11144612	3L_11144612_SNP [dm3] 3L_11151512_SNP [dm6]	T	A	5.072e^-5	0.661	UTR_5_PRIME CG32082 UPSTREAM CG6216
X	20423349	X_20423349_SNP [dm3] X_20552322_SNP [dm6]	G	A	5.073e^-5	0.661	INTRON RunxB
3R	17051005	3R_17051005_SNP [dm3] 3R_21225283_SNP [dm6]	G	A	5.188e^-5	0.67	SYNONYMOUS_CODING Nelf-A UPSTREAM CR44265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	22440652	3L_22440652_SNP [dm3] 3L_22447552_SNP [dm6]	A	G	5.214e^-5	0.67	INTERGENIC
2L	3501075	2L_3501075_SNP [dm3] 2L_3501075_SNP [dm6]	G	T	5.372e^-5	0.67	UTR_3_PRIME tim INTRON tim
2R	11152357	2R_11152357_SNP [dm3] 2R_15264852_SNP [dm6]	G	A	5.481e^-5	0.67	SYNONYMOUS_CODING Trpm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18151698	3L_18151698_SNP [dm3] 3L_18158598_SNP [dm6]	G	A	5.495e^-5	0.67	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12020388	2L_12020388_SNP [dm3] 2L_12020388_SNP [dm6]	T	A	5.510e^-5	0.67	SYNONYMOUS_CODING CG6734	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19146961	3L_19146961_SNP [dm3] 3L_19153861_SNP [dm6]	C	T	5.558e^-5	0.67	INTRON fz2	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11999540	3L_11999540_SNP [dm3] 3L_12006440_SNP [dm6]	C	A	5.584e^-5	0.67	INTRON CG6928
3L	10239940	3L_10239940_SNP [dm3] 3L_10246840_SNP [dm6]	T	C	5.662e^-5	0.67	DOWNSTREAM CR44540 EXON CR44539	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	15749918	3R_15749918_SNP [dm3] 3R_19924196_SNP [dm6]	A	C	5.663e^-5	0.67	INTRON CG4462
3R	9720739	3R_9720739_SNP [dm3] 3R_13895017_SNP [dm6]	A	G	5.732e^-5	0.67	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9995075	3R_9995075_SNP [dm3] 3R_14169353_SNP [dm6]	G	A	5.770e^-5	0.67	UTR_3_PRIME Dop1R1
3L	22156754	3L_22156754_INS [dm3] 3L_22163654_INS [dm6]	G	GGGA	5.780e^-5	0.67	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11526284	3L_11526284_INS [dm3] 3L_11533184_INS [dm6]	A	ACAA	5.803e^-5	0.67	INTRON Mob2
2L	6768637	2L_6768637_SNP [dm3] 2L_6768637_SNP [dm6]	C	A	5.820e^-5	0.67	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
2L	1082702	2L_1082702_SNP [dm3] 2L_1082702_SNP [dm6]	T	A	5.846e^-5	0.67	DOWNSTREAM CG4629 INTRON Atg4a	TF binding site mE1_TFBS_inv
2L	671203	2L_671203_SNP [dm3] 2L_671203_SNP [dm6]	G	T	5.905e^-5	0.67	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18798655	3L_18798655_SNP [dm3] 3L_18805555_SNP [dm6]	T	G	5.957e^-5	0.67	SYNONYMOUS_CODING CG14073	TF binding site mE1_TFBS_chinmo
3R	19182144	3R_19182144_SNP [dm3] 3R_23356422_SNP [dm6]	T	A	5.963e^-5	0.67	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	17714782	X_17714782_SNP [dm3] X_17820749_SNP [dm6]	A	C	6.002e^-5	0.67	DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	15772484	3R_15772484_SNP [dm3] 3R_19946762_SNP [dm6]	G	C	6.008e^-5	0.67	INTRON Hs6st
2L	13042555	2L_13042555_SNP [dm3] 2L_13042555_SNP [dm6]	G	A	6.022e^-5	0.67	INTRON CG9932
3R	14928661	3R_14928661_SNP [dm3] 3R_19102939_SNP [dm6]	G	A	6.071e^-5	0.67	INTRON CG6040
3L	10514506	3L_10514506_SNP [dm3] 3L_10521406_SNP [dm6]	A	T	6.091e^-5	0.67	INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12580419	3L_12580419_SNP [dm3] 3L_12587319_SNP [dm6]	T	C	6.102e^-5	0.67	INTRON ara
3L	22136525	3L_22136525_SNP [dm3] 3L_22143425_SNP [dm6]	G	T	6.104e^-5	0.67	INTRON olf413	TF binding site mE1_TFBS_HSA
3L	11526287	3L_11526287_SNP [dm3] 3L_11533187_SNP [dm6]	T	G	6.155e^-5	0.67	INTRON Mob2
2L	6767691	2L_6767691_SNP [dm3] 2L_6767691_SNP [dm6]	G	A	6.218e^-5	0.67	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
3R	2679505	3R_2679505_DEL [dm3] 3R_6853783_DEL [dm6]	CGCC	C	6.436e^-5	0.67	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19147476	3L_19147476_SNP [dm3] 3L_19154376_SNP [dm6]	A	G	6.442e^-5	0.67	INTRON fz2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3784441	X_3784441_DEL [dm3] X_3890408_DEL [dm6]	CC	C	6.477e^-5	0.67	UTR_3_PRIME CG15239
3L	3327210	3L_3327210_SNP [dm3] 3L_3327210_SNP [dm6]	A	G	6.494e^-5	0.67	INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc
X	20423336	X_20423336_SNP [dm3] X_20552309_SNP [dm6]	T	C	6.583e^-5	0.67	INTRON RunxB
X	21374258	X_21374258_SNP [dm3] X_21503231_SNP [dm6]	G	C	6.590e^-5	0.67	INTRON CR45082
3R	3047191	3R_3047191_SNP [dm3] 3R_7221469_SNP [dm6]	G	A	6.636e^-5	0.67	INTERGENIC
X	19732034	X_19732034_SNP [dm3] X_19838001_SNP [dm6]	A	G	6.680e^-5	0.67	INTRON pico	TF binding site mE1_TFBS_HSA
3R	25309070	3R_25309070_SNP [dm3] 3R_29483348_SNP [dm6]	G	C	6.728e^-5	0.67	SYNONYMOUS_CODING Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22388447	3L_22388447_SNP [dm3] 3L_22395347_SNP [dm6]	A	G	6.754e^-5	0.67	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	17714780	X_17714780_SNP [dm3] X_17820747_SNP [dm6]	A	G	6.776e^-5	0.67	DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	8562714	3L_8562714_SNP [dm3] 3L_8569614_SNP [dm6]	G	T	6.836e^-5	0.67	INTRON rhea EXON CR43910	TF binding site mE1_TFBS_HSA
2L	2507469	2L_2507469_DEL [dm3] 2L_2507469_DEL [dm6]	CTCT	G	6.838e^-5	0.67	EXON CR44607
3R	2747286	3R_2747286_SNP [dm3] 3R_6921564_SNP [dm6]	C	T	6.919e^-5	0.67	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11999436	3L_11999436_SNP [dm3] 3L_12006336_SNP [dm6]	A	G	6.935e^-5	0.67	INTRON CG6928
3R	3244892	3R_3244892_SNP [dm3] 3R_7419170_SNP [dm6]	C	A	6.997e^-5	0.67	INTRON CG31544
3L	20876041	3L_20876041_SNP [dm3] 3L_20882941_SNP [dm6]	A	T	7.041e^-5	0.67	INTRON CG32432
2L	9657541	2L_9657541_SNP [dm3] 2L_9657541_SNP [dm6]	T	A	7.112e^-5	0.67	DOWNSTREAM CG33299 INTERGENIC
3R	26078532	3R_26078532_SNP [dm3] 3R_30252810_SNP [dm6]	C	A	7.130e^-5	0.67	UTR_3_PRIME CG9682 UPSTREAM CG18404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19143892	2R_19143892_DEL [dm3] 2R_23256369_DEL [dm6]	ACATATATG	A	7.138e^-5	0.67	INTERGENIC
3R	8384589	3R_8384589_SNP [dm3] 3R_12558867_SNP [dm6]	C	T	7.146e^-5	0.67	INTRON Octbeta2R
3L	18293681	3L_18293681_SNP [dm3] 3L_18300581_SNP [dm6]	T	C	7.210e^-5	0.67	NON_SYNONYMOUS_CODING CG13700
X	18154510	X_18154510_SNP [dm3] X_18260477_SNP [dm6]	C	T	7.229e^-5	0.67	UPSTREAM CG15059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26873911	3R_26873911_SNP [dm3] 3R_31048189_SNP [dm6]	G	A	7.261e^-5	0.67	UPSTREAM Aph-4 INTERGENIC
2R	7370910	2R_7370910_SNP [dm3] 2R_11483405_SNP [dm6]	T	C	7.321e^-5	0.67	INTRON inv
2L	3500945	2L_3500945_SNP [dm3] 2L_3500945_SNP [dm6]	C	T	7.408e^-5	0.67	DOWNSTREAM tim INTRON tim
3R	2839925	3R_2839925_SNP [dm3] 3R_7014203_SNP [dm6]	A	T	7.451e^-5	0.67	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25064200	3R_25064200_DEL [dm3] 3R_29238478_DEL [dm6]	TT	T	7.498e^-5	0.67	DOWNSTREAM CG31427 INTRON CG11951
3R	19843467	3R_19843467_SNP [dm3] 3R_24017745_SNP [dm6]	G	A	7.607e^-5	0.67	INTRON KrT95D
2L	2507466	2L_2507466_SNP [dm3] 2L_2507466_SNP [dm6]	G	T	7.692e^-5	0.67	EXON CR44607
2R	2722069	2R_2722069_SNP [dm3] 2R_6834564_SNP [dm6]	G	A	7.738e^-5	0.67	NON_SYNONYMOUS_CODING CG15236 DOWNSTREAM mir-4976	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2722081	2R_2722081_SNP [dm3] 2R_6834576_SNP [dm6]	G	C	7.738e^-5	0.67	NON_SYNONYMOUS_CODING CG15236 DOWNSTREAM mir-4976	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9925257	2L_9925257_SNP [dm3] 2L_9925257_SNP [dm6]	C	A	7.751e^-5	0.67	UTR_5_PRIME CG42366 UPSTREAM TbCMF46
3L	11921122	3L_11921122_SNP [dm3] 3L_11928022_SNP [dm6]	T	A	7.813e^-5	0.67	SPLICE_SITE_REGION byn UTR_5_PRIME byn INTRON CG44837	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18422730	3R_18422730_SNP [dm3] 3R_22597008_SNP [dm6]	T	A	7.869e^-5	0.67	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20423337	X_20423337_SNP [dm3] X_20552310_SNP [dm6]	C	T	7.878e^-5	0.67	INTRON RunxB
3R	3244918	3R_3244918_DEL [dm3] 3R_7419196_DEL [dm6]	CCTAAGTTTAACATTCATGA...	C	7.907e^-5	0.67	INTRON CG31544
2L	7258251	2L_7258251_SNP [dm3] 2L_7258251_SNP [dm6]	C	T	7.941e^-5	0.67	DOWNSTREAM CG31909 INTRON Wnt4	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	7989369	X_7989369_SNP [dm3] X_8095336_SNP [dm6]	T	A	7.997e^-5	0.67	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
X	16540099	X_16540099_INS [dm3] X_16646066_INS [dm6]	T	TT	8.015e^-5	0.67	INTRON mthl1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9657605	2L_9657605_SNP [dm3] 2L_9657605_SNP [dm6]	A	T	8.039e^-5	0.67	DOWNSTREAM CG33299 INTERGENIC	TF binding site mE1_TFBS_inv
3L	11921393	3L_11921393_SNP [dm3] 3L_11928293_SNP [dm6]	C	G	8.076e^-5	0.67	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16934316	3L_16934316_SNP [dm3] 3L_16941216_SNP [dm6]	G	C	8.145e^-5	0.67	INTRON Cpr73D
2L	1826317	2L_1826317_SNP [dm3] 2L_1826317_SNP [dm6]	T	A	8.228e^-5	0.67	INTRON CG31664
3L	18151762	3L_18151762_SNP [dm3] 3L_18158662_SNP [dm6]	C	G	8.262e^-5	0.67	INTRON CG13699	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4752816	3R_4752816_SNP [dm3] 3R_8927094_SNP [dm6]	G	T	8.298e^-5	0.67	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22186322	3L_22186322_SNP [dm3] 3L_22193222_SNP [dm6]	C	T	8.312e^-5	0.67	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4757173	2L_4757173_SNP [dm3] 2L_4757173_SNP [dm6]	C	T	8.329e^-5	0.67	INTRON CG15630
3L	10649295	3L_10649295_SNP [dm3] 3L_10656195_SNP [dm6]	C	A	8.407e^-5	0.67	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
2L	1082689	2L_1082689_SNP [dm3] 2L_1082689_SNP [dm6]	A	C	8.410e^-5	0.67	DOWNSTREAM CG4629 INTRON Atg4a	TF binding site mE1_TFBS_inv
3L	2005376	3L_2005376_SNP [dm3] 3L_2005376_SNP [dm6]	A	C	8.437e^-5	0.67	SYNONYMOUS_CODING CG42841
3L	12580424	3L_12580424_SNP [dm3] 3L_12587324_SNP [dm6]	A	T	8.563e^-5	0.67	INTRON ara
3R	8392402	3R_8392402_SNP [dm3] 3R_12566680_SNP [dm6]	C	A	8.578e^-5	0.67	INTRON Octbeta2R
2R	17191212	2R_17191212_SNP [dm3] 2R_21303707_SNP [dm6]	T	A	8.593e^-5	0.67	INTRON CG42672
3R	19181150	3R_19181150_SNP [dm3] 3R_23355428_SNP [dm6]	G	C	8.640e^-5	0.67	SYNONYMOUS_CODING ATPsyn-Cf6 UPSTREAM Sec13 DOWNSTREAM DNApol-epsilon	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	24103567	3R_24103567_SNP [dm3] 3R_28277845_SNP [dm6]	G	A	8.666e^-5	0.67	INTERGENIC
2R	17192490	2R_17192490_SNP [dm3] 2R_21304985_SNP [dm6]	A	G	8.671e^-5	0.67	SYNONYMOUS_CODING CG42672	TF binding site mE1_TFBS_cad
X	21248217	X_21248217_INS [dm3] X_21377190_INS [dm6]	T	TT	8.692e^-5	0.67	INTRON slgA
X	21248251	X_21248251_SNP [dm3] X_21377224_SNP [dm6]	C	A	8.692e^-5	0.67	INTRON slgA
3R	27128137	3R_27128137_SNP [dm3] 3R_31302415_SNP [dm6]	A	G	8.762e^-5	0.67	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
2R	14610340	2R_14610340_SNP [dm3] 2R_18722835_SNP [dm6]	A	C	8.766e^-5	0.67	INTRON Hs3st-A
3L	9885016	3L_9885016_SNP [dm3] 3L_9891916_SNP [dm6]	C	T	8.770e^-5	0.67	SYNONYMOUS_CODING CalpB	TF binding site mE1_TFBS_cad
3R	5860178	3R_5860178_SNP [dm3] 3R_10034456_SNP [dm6]	A	G	8.857e^-5	0.67	INTRON Mical	TF binding site mE1_TFBS_inv
3L	10240619	3L_10240619_SNP [dm3] 3L_10247519_SNP [dm6]	G	T	8.880e^-5	0.67	DOWNSTREAM CR44540 EXON CR44539	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	19181865	3R_19181865_SNP [dm3] 3R_23356143_SNP [dm6]	T	A	8.909e^-5	0.67	UPSTREAM Sec13 & 1 other DOWNSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2375486	3L_2375486_SNP [dm3] 3L_2375486_SNP [dm6]	A	G	8.985e^-5	0.67	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877	TF binding site mE1_TFBS_sens
3L	12580439	3L_12580439_SNP [dm3] 3L_12587339_SNP [dm6]	A	T	9.008e^-5	0.67	INTRON ara
2R	17191177	2R_17191177_SNP [dm3] 2R_21303672_SNP [dm6]	C	T	9.044e^-5	0.67	INTRON CG42672
3R	4752674	3R_4752674_SNP [dm3] 3R_8926952_SNP [dm6]	T	C	9.149e^-5	0.67	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4752696	3R_4752696_SNP [dm3] 3R_8926974_SNP [dm6]	C	T	9.149e^-5	0.67	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7387196	2L_7387196_SNP [dm3] 2L_7387196_SNP [dm6]	G	C	9.157e^-5	0.67	INTRON CG5149	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	4300897	2L_4300897_SNP [dm3] 2L_4300897_SNP [dm6]	A	C	9.170e^-5	0.67	INTRON tutl
X	20423643	X_20423643_SNP [dm3] X_20552616_SNP [dm6]	A	G	9.175e^-5	0.67	INTRON RunxB
3R	20821214	3R_20821214_SNP [dm3] 3R_24995492_SNP [dm6]	T	C	9.206e^-5	0.67	INTRON tnc	TF binding site mE1_TFBS_cad
3L	2364760	3L_2364760_SNP [dm3] 3L_2364760_SNP [dm6]	A	G	9.231e^-5	0.67	INTERGENIC
3R	2513785	3R_2513785_SNP [dm3] 3R_6688063_SNP [dm6]	T	A	9.252e^-5	0.67	DOWNSTREAM Ccp84Ag INTERGENIC
3R	16907562	3R_16907562_SNP [dm3] 3R_21081840_SNP [dm6]	A	T	9.261e^-5	0.67	UPSTREAM HHEX INTERGENIC
2L	9387002	2L_9387002_SNP [dm3] 2L_9387002_SNP [dm6]	T	A	9.265e^-5	0.67	UPSTREAM Aldh INTRON Shawl
3R	25064281	3R_25064281_SNP [dm3] 3R_29238559_SNP [dm6]	T	A	9.270e^-5	0.67	DOWNSTREAM CG31427 INTRON CG11951
3R	9997243	3R_9997243_SNP [dm3] 3R_14171521_SNP [dm6]	C	T	9.324e^-5	0.67	UTR_3_PRIME Dop1R1
2L	3501095	2L_3501095_SNP [dm3] 2L_3501095_SNP [dm6]	G	T	9.330e^-5	0.67	UTR_3_PRIME tim INTRON tim
2L	15736429	2L_15736429_SNP [dm3] 2L_15736429_SNP [dm6]	C	G	9.334e^-5	0.67	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12192776	3L_12192776_SNP [dm3] 3L_12199676_SNP [dm6]	A	T	9.356e^-5	0.67	DOWNSTREAM CG11529 & 1 other INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	3554669	2L_3554669_SNP [dm3] 2L_3554669_SNP [dm6]	C	T	9.398e^-5	0.67	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	723055	2L_723055_SNP [dm3] 2L_723055_SNP [dm6]	A	T	9.408e^-5	0.67	INTERGENIC
3R	26104388	3R_26104388_SNP [dm3] 3R_30278666_SNP [dm6]	A	G	9.547e^-5	0.67	UTR_5_PRIME hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11948449	2L_11948449_SNP [dm3] 2L_11948449_SNP [dm6]	G	A	9.715e^-5	0.67	NON_SYNONYMOUS_CODING CG16964	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	21374449	X_21374449_SNP [dm3] X_21503422_SNP [dm6]	G	A	9.740e^-5	0.67	INTRON CR45082
3R	25064285	3R_25064285_SNP [dm3] 3R_29238563_SNP [dm6]	C	A	9.765e^-5	0.67	DOWNSTREAM CG31427 INTRON CG11951
3L	2364742	3L_2364742_SNP [dm3] 3L_2364742_SNP [dm6]	T	A	9.803e^-5	0.67	INTERGENIC
2L	17086342	2L_17086342_SNP [dm3] 2L_17086342_SNP [dm6]	G	T	9.823e^-5	0.67	DOWNSTREAM CR43819 EXON CR43819
3L	16875791	3L_16875791_INS [dm3] 3L_16882691_INS [dm6]	G	GAG	9.859e^-5	0.67	INTRON Lmpt
3L	2375223	3L_2375223_SNP [dm3] 3L_2375223_SNP [dm6]	C	T	9.903e^-5	0.67	SYNONYMOUS_CODING CG9004	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10240620	3L_10240620_SNP [dm3] 3L_10247520_SNP [dm6]	C	T	9.906e^-5	0.67	DOWNSTREAM CR44540 EXON CR44539	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	15713683	3L_15713683_SNP [dm3] 3L_15720583_SNP [dm6]	C	G	1.001e^-4	0.67	DOWNSTREAM CG42570 & 1 other INTERGENIC
3L	8503585	3L_8503585_SNP [dm3] 3L_8510485_SNP [dm6]	T	C	1.006e^-4	0.67	UPSTREAM ZC3H3 INTRON CG6745	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11602479	X_11602479_SNP [dm3] X_11708446_SNP [dm6]	A	G	1.009e^-4	0.67	SYNONYMOUS_CODING FucT6
3L	5869847	3L_5869847_SNP [dm3] 3L_5876747_SNP [dm6]	T	C	1.010e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10920023	2L_10920023_SNP [dm3] 2L_10920023_SNP [dm6]	T	G	1.012e^-4	0.67	INTRON dpr2
X	19732013	X_19732013_SNP [dm3] X_19837980_SNP [dm6]	G	A	1.015e^-4	0.67	INTRON pico	TF binding site mE1_TFBS_HSA
3R	25065425	3R_25065425_SNP [dm3] 3R_29239703_SNP [dm6]	T	C	1.017e^-4	0.67	NON_SYNONYMOUS_CODING CG31427 UPSTREAM CG11951 DOWNSTREAM CG31445
3R	20555329	3R_20555329_SNP [dm3] 3R_24729607_SNP [dm6]	A	C	1.022e^-4	0.67	INTRON tok
2L	656065	2L_656065_SNP [dm3] 2L_656065_SNP [dm6]	G	A	1.027e^-4	0.67	INTRON ds
3R	2689201	3R_2689201_SNP [dm3] 3R_6863479_SNP [dm6]	C	A	1.030e^-4	0.67	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18444529	3R_18444529_SNP [dm3] 3R_22618807_SNP [dm6]	C	G	1.035e^-4	0.67	SYNONYMOUS_CODING mRpL45 DOWNSTREAM CG31161	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24747991	3R_24747991_SNP [dm3] 3R_28922269_SNP [dm6]	G	C	1.038e^-4	0.67	UTR_3_PRIME Doa UPSTREAM CG11828 DOWNSTREAM Doa
3L	18155583	3L_18155583_SNP [dm3] 3L_18162483_SNP [dm6]	T	A	1.039e^-4	0.67	UTR_5_PRIME CG13699
3R	25128699	3R_25128699_SNP [dm3] 3R_29302977_SNP [dm6]	G	T	1.043e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19145280	3L_19145280_SNP [dm3] 3L_19152180_SNP [dm6]	G	C	1.053e^-4	0.67	INTRON fz2	TF binding site BDTNP1_TFBS_da
X	20232189	X_20232189_SNP [dm3] X_20361162_SNP [dm6]	T	A	1.056e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	2615399	3R_2615399_SNP [dm3] 3R_6789677_SNP [dm6]	A	C	1.061e^-4	0.67	INTERGENIC
2R	17410473	2R_17410473_SNP [dm3] 2R_21522968_SNP [dm6]	A	C	1.065e^-4	0.67	UTR_5_PRIME Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	22479363	3L_22479363_SNP [dm3] 3L_22486263_SNP [dm6]	G	T	1.074e^-4	0.67	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5431034	3L_5431034_SNP [dm3] 3L_5437934_SNP [dm6]	G	C	1.080e^-4	0.67	INTRON CG34391
3L	11999505	3L_11999505_SNP [dm3] 3L_12006405_SNP [dm6]	T	A	1.084e^-4	0.67	INTRON CG6928
3R	19182142	3R_19182142_SNP [dm3] 3R_23356420_SNP [dm6]	A	G	1.086e^-4	0.67	START_GAINED Sec13 UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	16907529	3R_16907529_SNP [dm3] 3R_21081807_SNP [dm6]	G	A	1.089e^-4	0.67	UPSTREAM HHEX INTERGENIC
3L	9583195	3L_9583195_SNP [dm3] 3L_9590095_SNP [dm6]	C	G	1.092e^-4	0.67	INTRON CG42673
3L	18789603	3L_18789603_SNP [dm3] 3L_18796503_SNP [dm6]	G	T	1.106e^-4	0.67	INTRON ftz-f1
2R	12698657	2R_12698657_INS [dm3] 2R_16811152_INS [dm6]	C	CC	1.108e^-4	0.67	DOWNSTREAM CR44465 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	22172375	3L_22172375_SNP [dm3] 3L_22179275_SNP [dm6]	A	T	1.110e^-4	0.67	INTRON olf413	TF binding site BDTNP1_TFBS_da
3R	23095409	3R_23095409_SNP [dm3] 3R_27269687_SNP [dm6]	C	T	1.120e^-4	0.67	NON_SYNONYMOUS_CODING l_3_mbt	TF binding site mE1_TFBS_chinmo
3L	12311304	3L_12311304_SNP [dm3] 3L_12318204_SNP [dm6]	A	C	1.120e^-4	0.67	INTERGENIC
3L	11999522	3L_11999522_SNP [dm3] 3L_12006422_SNP [dm6]	G	T	1.122e^-4	0.67	INTRON CG6928
X	21982919	X_21982919_SNP [dm3] X_22581083_SNP [dm6]	C	T	1.123e^-4	0.67	INTERGENIC
3L	22355330	3L_22355330_SNP [dm3] 3L_22362230_SNP [dm6]	T	A	1.125e^-4	0.67	INTRON Ten-m
2L	4759217	2L_4759217_SNP [dm3] 2L_4759217_SNP [dm6]	C	T	1.125e^-4	0.67	INTRON CG15630
2R	17189954	2R_17189954_SNP [dm3] 2R_21302449_SNP [dm6]	T	C	1.126e^-4	0.67	SYNONYMOUS_CODING CG42672 INTRON CG42672
2L	2755107	2L_2755107_SNP [dm3] 2L_2755107_SNP [dm6]	C	G	1.128e^-4	0.67	INTRON Bacc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5301683	3L_5301683_SNP [dm3] 3L_5308583_SNP [dm6]	A	G	1.129e^-4	0.67	INTERGENIC
3L	11999411	3L_11999411_MNP [dm3] 3L_12006311_MNP [dm6]	CTC	GCT	1.130e^-4	0.67	INTRON CG6928
X	12993166	X_12993166_SNP [dm3] X_13099133_SNP [dm6]	A	T	1.133e^-4	0.67	INTRON CG43313
2R	10846009	2R_10846009_SNP [dm3] 2R_14958504_SNP [dm6]	T	A	1.134e^-4	0.67	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4757150	2L_4757150_SNP [dm3] 2L_4757150_SNP [dm6]	T	C	1.142e^-4	0.67	INTRON CG15630
2R	15779916	2R_15779916_SNP [dm3] 2R_19892411_SNP [dm6]	T	A	1.143e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	12999518	2L_12999518_SNP [dm3] 2L_12999518_SNP [dm6]	C	A	1.144e^-4	0.67	INTRON CG12404
X	17714794	X_17714794_SNP [dm3] X_17820761_SNP [dm6]	A	G	1.144e^-4	0.67	DOWNSTREAM Socs16D INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	9080623	3L_9080623_SNP [dm3] 3L_9087523_SNP [dm6]	C	A	1.151e^-4	0.67	SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad
2L	19369578	2L_19369578_DEL [dm3] 2L_19369578_DEL [dm6]	TCGCATTTTCCTGCAGAACT...	T	1.152e^-4	0.67	UPSTREAM CG17349 INTERGENIC
3R	15749744	3R_15749744_SNP [dm3] 3R_19924022_SNP [dm6]	C	T	1.153e^-4	0.67	INTRON CG4462	TF binding site mE1_TFBS_cad
2L	3413064	2L_3413064_INS [dm3] 2L_3413064_INS [dm6]	T	TTCCTTA	1.164e^-4	0.67	INTRON pgant2
3L	8829436	3L_8829436_SNP [dm3] 3L_8836336_SNP [dm6]	T	G	1.164e^-4	0.67	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
X	16205897	X_16205897_SNP [dm3] X_16311864_SNP [dm6]	C	G	1.164e^-4	0.67	SYNONYMOUS_CODING CG9915	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14893635	3R_14893635_DEL [dm3] 3R_19067913_DEL [dm6]	TT	T	1.164e^-4	0.67	INTRON cdi
X	1455392	X_1455392_SNP [dm3] X_1561359_SNP [dm6]	C	T	1.167e^-4	0.67	INTRON Mur2B
3L	16416841	3L_16416841_SNP [dm3] 3L_16423741_SNP [dm6]	C	T	1.167e^-4	0.67	SYNONYMOUS_CODING dsx-c73A INTRON CG33158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2747168	3R_2747168_SNP [dm3] 3R_6921446_SNP [dm6]	G	T	1.172e^-4	0.67	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5929532	X_5929532_SNP [dm3] X_6035499_SNP [dm6]	C	T	1.173e^-4	0.67	DOWNSTREAM rux INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	12418211	X_12418211_SNP [dm3] X_12524178_SNP [dm6]	C	T	1.175e^-4	0.67	NON_SYNONYMOUS_CODING CG43921 UTR_5_PRIME CG43921
3R	3244995	3R_3244995_SNP [dm3] 3R_7419273_SNP [dm6]	G	T	1.178e^-4	0.67	UPSTREAM CG34023 INTRON CG31544
3L	12311309	3L_12311309_SNP [dm3] 3L_12318209_SNP [dm6]	T	A	1.180e^-4	0.67	INTERGENIC
3L	14988178	3L_14988178_SNP [dm3] 3L_14995078_SNP [dm6]	C	A	1.184e^-4	0.67	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2389872	2L_2389872_SNP [dm3] 2L_2389872_SNP [dm6]	G	A	1.188e^-4	0.67	NON_SYNONYMOUS_CODING CG43750
3R	17051092	3R_17051092_SNP [dm3] 3R_21225370_SNP [dm6]	A	C	1.190e^-4	0.67	SYNONYMOUS_CODING Nelf-A UPSTREAM CR44265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	9312339	3R_9312339_SNP [dm3] 3R_13486617_SNP [dm6]	T	C	1.192e^-4	0.67	INTERGENIC
3L	3573203	3L_3573203_SNP [dm3] 3L_3573203_SNP [dm6]	A	G	1.192e^-4	0.67	INTRON Eip63E
3L	9813409	3L_9813409_SNP [dm3] 3L_9820309_SNP [dm6]	A	G	1.193e^-4	0.67	UTR_5_PRIME CG43897
3L	10439002	3L_10439002_SNP [dm3] 3L_10445902_SNP [dm6]	G	T	1.218e^-4	0.67	INTERGENIC
2L	18367829	2L_18367829_SNP [dm3] 2L_18367829_SNP [dm6]	C	T	1.221e^-4	0.67	INTRON Fas3
3L	22162524	3L_22162524_SNP [dm3] 3L_22169424_SNP [dm6]	C	T	1.223e^-4	0.67	INTRON olf413
2L	3500887	2L_3500887_SNP [dm3] 2L_3500887_SNP [dm6]	G	C	1.224e^-4	0.67	DOWNSTREAM tim INTRON tim
2R	2655533	2R_2655533_DEL [dm3] 2R_6768028_DEL [dm6]	GT	A	1.229e^-4	0.67	INTRON Epac	TF binding site mE1_TFBS_cad
X	5913166	X_5913166_SNP [dm3] X_6019133_SNP [dm6]	C	G	1.229e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25124801	3R_25124801_SNP [dm3] 3R_29299079_SNP [dm6]	G	A	1.233e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9583196	3L_9583196_SNP [dm3] 3L_9590096_SNP [dm6]	T	C	1.235e^-4	0.67	INTRON CG42673
X	18918458	X_18918458_INS [dm3] X_19024425_INS [dm6]	T	TGTGAATCCT	1.236e^-4	0.67	INTRON CG43759
3L	5895061	3L_5895061_SNP [dm3] 3L_5901961_SNP [dm6]	A	G	1.250e^-4	0.67	SYNONYMOUS_CODING QC DOWNSTREAM CG32413
2L	9798689	2L_9798689_SNP [dm3] 2L_9798689_SNP [dm6]	T	C	1.256e^-4	0.67	INTRON nAChRalpha6
3R	19181860	3R_19181860_SNP [dm3] 3R_23356138_SNP [dm6]	T	G	1.259e^-4	0.67	UPSTREAM Sec13 & 1 other DOWNSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	19926727	3R_19926727_SNP [dm3] 3R_24101005_SNP [dm6]	G	T	1.267e^-4	0.67	DOWNSTREAM Syx1A INTRON 4EHP
X	21374419	X_21374419_SNP [dm3] X_21503392_SNP [dm6]	T	A	1.269e^-4	0.67	INTRON CR45082
X	8299439	X_8299439_SNP [dm3] X_8405406_SNP [dm6]	C	G	1.272e^-4	0.67	SYNONYMOUS_CODING CG11190 DOWNSTREAM CG10555	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17190508	2R_17190508_SNP [dm3] 2R_21303003_SNP [dm6]	T	A	1.274e^-4	0.67	INTRON CG42672
3L	12311254	3L_12311254_SNP [dm3] 3L_12318154_SNP [dm6]	T	G	1.275e^-4	0.67	INTERGENIC
2L	14353170	2L_14353170_SNP [dm3] 2L_14353170_SNP [dm6]	C	T	1.275e^-4	0.67	NON_SYNONYMOUS_CODING l_2_34Fd DOWNSTREAM CG43052	TF binding site mE1_TFBS_cad
X	22360455	X_22360455_SNP [dm3] X_22958619_SNP [dm6]	G	T	1.276e^-4	0.67	DOWNSTREAM CG40486 EXON CR45502	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8340858	2L_8340858_SNP [dm3] 2L_8340858_SNP [dm6]	T	C	1.277e^-4	0.67	INTRON CG14274
2L	3501082	2L_3501082_SNP [dm3] 2L_3501082_SNP [dm6]	G	C	1.285e^-4	0.67	UTR_3_PRIME tim INTRON tim
3R	25007780	3R_25007780_SNP [dm3] 3R_29182058_SNP [dm6]	A	G	1.288e^-4	0.67	INTRON CG14509
3R	2605557	3R_2605557_SNP [dm3] 3R_6779835_SNP [dm6]	G	T	1.291e^-4	0.67	UPSTREAM CR43435 DOWNSTREAM CR42721 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1
3L	17693092	3L_17693092_SNP [dm3] 3L_17699992_SNP [dm6]	C	A	1.292e^-4	0.67	INTRON Ccn
2L	6424015	2L_6424015_SNP [dm3] 2L_6424015_SNP [dm6]	C	A	1.293e^-4	0.67	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10010861	3L_10010861_SNP [dm3] 3L_10017761_SNP [dm6]	C	G	1.299e^-4	0.67	INTRON dpr6
3R	13276446	3R_13276446_SNP [dm3] 3R_17450724_SNP [dm6]	G	T	1.303e^-4	0.67	INTERGENIC
2L	6093316	2L_6093316_SNP [dm3] 2L_6093316_SNP [dm6]	C	T	1.310e^-4	0.67	NON_SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2005291	3L_2005291_SNP [dm3] 3L_2005291_SNP [dm6]	G	T	1.311e^-4	0.67	UTR_3_PRIME CG42841
2R	6848048	2R_6848048_INS [dm3] 2R_10960543_INS [dm6]	T	TAAGAA	1.316e^-4	0.67	INTERGENIC
3L	8505866	3L_8505866_SNP [dm3] 3L_8512766_SNP [dm6]	T	C	1.320e^-4	0.67	UTR_3_PRIME CG6745 UPSTREAM CG6765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3501084	2L_3501084_DEL [dm3] 2L_3501084_DEL [dm6]	TTA	T	1.320e^-4	0.67	UTR_3_PRIME tim INTRON tim
3R	25448800	3R_25448800_SNP [dm3] 3R_29623078_SNP [dm6]	A	G	1.325e^-4	0.67	INTERGENIC
3L	18157739	3L_18157739_SNP [dm3] 3L_18164639_SNP [dm6]	G	C	1.330e^-4	0.67	INTERGENIC
2L	1423549	2L_1423549_SNP [dm3] 2L_1423549_SNP [dm6]	A	G	1.330e^-4	0.67	INTERGENIC
2L	7190486	2L_7190486_DEL [dm3] 2L_7190486_DEL [dm6]	TT	T	1.330e^-4	0.67	UTR_3_PRIME CG4497 UPSTREAM CG4496
3R	13681718	3R_13681718_SNP [dm3] 3R_17855996_SNP [dm6]	T	C	1.332e^-4	0.67	INTRON tinc
2R	8258779	2R_8258779_INS [dm3] 2R_12371274_INS [dm6]	A	TATAT	1.348e^-4	0.67	UPSTREAM CG13160 DOWNSTREAM CG33012 INTERGENIC
2L	1405713	2L_1405713_SNP [dm3] 2L_1405713_SNP [dm6]	T	G	1.349e^-4	0.67	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	1449200	X_1449200_SNP [dm3] X_1555167_SNP [dm6]	T	A	1.358e^-4	0.67	SYNONYMOUS_CODING Mur2B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5153873	X_5153873_SNP [dm3] X_5259840_SNP [dm6]	A	G	1.360e^-4	0.67	INTERGENIC
3R	17050981	3R_17050981_SNP [dm3] 3R_21225259_SNP [dm6]	T	C	1.363e^-4	0.67	SYNONYMOUS_CODING Nelf-A UPSTREAM CR44265	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	6651679	3L_6651679_SNP [dm3] 3L_6658579_SNP [dm6]	A	T	1.364e^-4	0.67	INTERGENIC
3L	2364761	3L_2364761_SNP [dm3] 3L_2364761_SNP [dm6]	T	G	1.369e^-4	0.67	INTERGENIC
X	5930360	X_5930360_SNP [dm3] X_6036327_SNP [dm6]	G	T	1.373e^-4	0.67	NON_SYNONYMOUS_CODING rux	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	3019594	3L_3019594_SNP [dm3] 3L_3019594_SNP [dm6]	T	G	1.374e^-4	0.67	INTERGENIC
3R	19181852	3R_19181852_SNP [dm3] 3R_23356130_SNP [dm6]	T	C	1.379e^-4	0.67	UPSTREAM Sec13 & 1 other DOWNSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	4345727	X_4345727_SNP [dm3] X_4451694_SNP [dm6]	G	A	1.380e^-4	0.67	INTRON CR32773 & 1 other	TF binding site mE1_TFBS_inv
X	19107471	X_19107471_SNP [dm3] X_19213438_SNP [dm6]	A	G	1.382e^-4	0.67	INTRON Mur18B	TF binding site mE1_TFBS_chinmo
X	7428786	X_7428786_SNP [dm3] X_7534753_SNP [dm6]	A	G	1.384e^-4	0.67	DOWNSTREAM CG32720 INTRON CG32719
2R	13837687	2R_13837687_SNP [dm3] 2R_17950182_SNP [dm6]	G	A	1.384e^-4	0.67	INTERGENIC
X	6780705	X_6780705_SNP [dm3] X_6886672_SNP [dm6]	C	G	1.384e^-4	0.67	INTERGENIC
3L	14988180	3L_14988180_SNP [dm3] 3L_14995080_SNP [dm6]	G	A	1.385e^-4	0.67	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26760792	3R_26760792_SNP [dm3] 3R_30935070_SNP [dm6]	C	A	1.387e^-4	0.67	DOWNSTREAM CG15549 INTERGENIC
2R	13837704	2R_13837704_SNP [dm3] 2R_17950199_SNP [dm6]	T	G	1.388e^-4	0.67	INTERGENIC
3R	2622100	3R_2622100_SNP [dm3] 3R_6796378_SNP [dm6]	A	G	1.390e^-4	0.67	INTRON Dfd	TF binding site mE1_TFBS_cnc
3L	3460051	3L_3460051_SNP [dm3] 3L_3460051_SNP [dm6]	T	C	1.394e^-4	0.67	NON_SYNONYMOUS_CODING eIF5B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9953189	3L_9953189_SNP [dm3] 3L_9960089_SNP [dm6]	C	T	1.394e^-4	0.67	INTRON CG34356
2L	7258591	2L_7258591_SNP [dm3] 2L_7258591_SNP [dm6]	T	C	1.401e^-4	0.67	DOWNSTREAM CG31909 INTRON Wnt4	TF binding site mE1_TFBS_zfh1
3L	6651691	3L_6651691_SNP [dm3] 3L_6658591_SNP [dm6]	G	T	1.402e^-4	0.67	INTERGENIC
2R	8121023	2R_8121023_DEL [dm3] 2R_12233518_DEL [dm6]	TT	T	1.406e^-4	0.67	DOWNSTREAM CR44313 INTERGENIC
3L	732867	3L_732867_DEL [dm3] 3L_732867_DEL [dm6]	TGCAACCGCTGGCCAAGCCG...	GGAATCAC	1.406e^-4	0.67	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	13918827	3L_13918827_SNP [dm3] 3L_13925727_SNP [dm6]	C	A	1.406e^-4	0.67	UPSTREAM Rgl DOWNSTREAM CG8833 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	3244823	3R_3244823_SNP [dm3] 3R_7419101_SNP [dm6]	A	T	1.415e^-4	0.67	INTRON CG31544
2R	6848050	2R_6848050_SNP [dm3] 2R_10960545_SNP [dm6]	G	A	1.416e^-4	0.67	INTERGENIC
3R	18444377	3R_18444377_SNP [dm3] 3R_22618655_SNP [dm6]	T	A	1.419e^-4	0.67	DOWNSTREAM CG31161 INTRON mRpL45	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9080599	3L_9080599_SNP [dm3] 3L_9087499_SNP [dm6]	A	G	1.419e^-4	0.67	SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad
2L	4046185	2L_4046185_SNP [dm3] 2L_4046185_SNP [dm6]	A	G	1.421e^-4	0.67	INTRON ed	TF binding site mE1_TFBS_HSA
2R	1862646	2R_1862646_SNP [dm3] 2R_5975141_SNP [dm6]	T	A	1.422e^-4	0.67	UTR_3_PRIME mle UPSTREAM BubR1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18326347	3L_18326347_SNP [dm3] 3L_18333247_SNP [dm6]	C	G	1.432e^-4	0.672	INTERGENIC
3R	19386778	3R_19386778_SNP [dm3] 3R_23561056_SNP [dm6]	T	C	1.434e^-4	0.672	INTRON beat-IV	TF binding site mE1_TFBS_inv
3R	3003641	3R_3003641_SNP [dm3] 3R_7177919_SNP [dm6]	T	G	1.440e^-4	0.674	INTRON sas
2L	8243118	2L_8243118_SNP [dm3] 2L_8243118_SNP [dm6]	G	A	1.464e^-4	0.682	SYNONYMOUS_CODING CG14277 DOWNSTREAM CG43057 & 1 other
2R	17625290	2R_17625290_SNP [dm3] 2R_21737785_SNP [dm6]	A	T	1.471e^-4	0.682	INTERGENIC
3L	2005280	3L_2005280_SNP [dm3] 3L_2005280_SNP [dm6]	C	T	1.480e^-4	0.682	UTR_3_PRIME CG42841
3L	18299528	3L_18299528_SNP [dm3] 3L_18306428_SNP [dm6]	C	A	1.488e^-4	0.682	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18444238	3R_18444238_SNP [dm3] 3R_22618516_SNP [dm6]	T	C	1.494e^-4	0.682	UTR_5_PRIME mRpL45 DOWNSTREAM CG31161	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21374397	X_21374397_SNP [dm3] X_21503370_SNP [dm6]	T	A	1.495e^-4	0.682	INTRON CR45082
3L	9953190	3L_9953190_SNP [dm3] 3L_9960090_SNP [dm6]	A	G	1.497e^-4	0.682	INTRON CG34356
2R	17432032	2R_17432032_SNP [dm3] 2R_21544527_SNP [dm6]	G	A	1.502e^-4	0.682	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2124783	2L_2124783_SNP [dm3] 2L_2124783_SNP [dm6]	G	C	1.503e^-4	0.682	INTERGENIC
3R	2681248	3R_2681248_SNP [dm3] 3R_6855526_SNP [dm6]	G	A	1.504e^-4	0.682	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	2687225	3R_2687225_SNP [dm3] 3R_6861503_SNP [dm6]	G	A	1.510e^-4	0.682	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18422716	3R_18422716_SNP [dm3] 3R_22596994_SNP [dm6]	G	A	1.513e^-4	0.682	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6424016	2L_6424016_SNP [dm3] 2L_6424016_SNP [dm6]	A	T	1.513e^-4	0.682	UPSTREAM Tig & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3816708	3L_3816708_SNP [dm3] 3L_3816708_SNP [dm6]	G	A	1.513e^-4	0.682	SYNONYMOUS_CODING Scsalpha UPSTREAM CR45034 & 1 other
3L	8553204	3L_8553204_SNP [dm3] 3L_8560104_SNP [dm6]	G	A	1.516e^-4	0.682	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18326379	3L_18326379_SNP [dm3] 3L_18333279_SNP [dm6]	T	A	1.519e^-4	0.682	INTERGENIC
2L	3415232	2L_3415232_SNP [dm3] 2L_3415232_SNP [dm6]	T	A	1.519e^-4	0.682	INTRON pgant2
2R	18488577	2R_18488577_SNP [dm3] 2R_22601072_SNP [dm6]	A	C	1.528e^-4	0.683	SYNONYMOUS_CODING CG4294 DOWNSTREAM CG4269
3R	20887412	3R_20887412_SNP [dm3] 3R_25061690_SNP [dm6]	T	C	1.531e^-4	0.683	SYNONYMOUS_CODING Unc-13-4B
3L	15298335	3L_15298335_SNP [dm3] 3L_15305235_SNP [dm6]	C	T	1.536e^-4	0.683	UPSTREAM CG7255 INTRON CG7255	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	2840007	3R_2840007_SNP [dm3] 3R_7014285_SNP [dm6]	T	A	1.536e^-4	0.683	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	22134387	3L_22134387_SNP [dm3] 3L_22141287_SNP [dm6]	A	C	1.543e^-4	0.684	INTRON olf413
2R	6848052	2R_6848052_SNP [dm3] 2R_10960547_SNP [dm6]	G	C	1.546e^-4	0.684	INTERGENIC
3R	13277138	3R_13277138_SNP [dm3] 3R_17451416_SNP [dm6]	C	A	1.562e^-4	0.687	INTERGENIC
3R	15749944	3R_15749944_SNP [dm3] 3R_19924222_SNP [dm6]	A	G	1.564e^-4	0.687	INTRON CG4462
3L	20876225	3L_20876225_INS [dm3] 3L_20883125_INS [dm6]	T	TAAATTATATTAATTAAATA...	1.570e^-4	0.687	INTRON CG32432
3L	9953141	3L_9953141_SNP [dm3] 3L_9960041_SNP [dm6]	C	G	1.575e^-4	0.687	INTRON CG34356
3L	2375222	3L_2375222_SNP [dm3] 3L_2375222_SNP [dm6]	C	T	1.577e^-4	0.687	SYNONYMOUS_CODING CG9004	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12991738	3L_12991738_SNP [dm3] 3L_12998638_SNP [dm6]	C	G	1.579e^-4	0.687	INTERGENIC
2R	8350800	2R_8350800_SNP [dm3] 2R_12463295_SNP [dm6]	A	G	1.582e^-4	0.687	INTRON Lac	TF binding site BDTNP1_TFBS_dl
2L	1082690	2L_1082690_DEL [dm3] 2L_1082690_DEL [dm6]	CCAT	C	1.583e^-4	0.687	DOWNSTREAM CG4629 INTRON Atg4a	TF binding site mE1_TFBS_inv
3L	20875981	3L_20875981_SNP [dm3] 3L_20882881_SNP [dm6]	C	T	1.596e^-4	0.69	INTRON CG32432
3R	19182118	3R_19182118_SNP [dm3] 3R_23356396_SNP [dm6]	C	G	1.598e^-4	0.69	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4752697	3R_4752697_SNP [dm3] 3R_8926975_SNP [dm6]	A	T	1.610e^-4	0.691	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18318355	3L_18318355_SNP [dm3] 3L_18325255_SNP [dm6]	G	T	1.618e^-4	0.691	INTERGENIC
3L	15701840	3L_15701840_SNP [dm3] 3L_15708740_SNP [dm6]	C	T	1.627e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7147169	2R_7147169_SNP [dm3] 2R_11259664_SNP [dm6]	C	A	1.636e^-4	0.691	NON_SYNONYMOUS_CODING Cpr47Ec DOWNSTREAM CG13223
3L	18840614	3L_18840614_INS [dm3] 3L_18847514_INS [dm6]	C	CCAAAACAGTAACGGTTCAA...	1.640e^-4	0.691	INTERGENIC
3R	2595125	3R_2595125_SNP [dm3] 3R_6769403_SNP [dm6]	C	A	1.641e^-4	0.691	INTRON CR42721	TF binding site mE1_TFBS_cad
2L	1263705	2L_1263705_SNP [dm3] 2L_1263705_SNP [dm6]	A	G	1.642e^-4	0.691	INTRON robo3	TF binding site BDTNP1_TFBS_dl
2R	12806503	2R_12806503_SNP [dm3] 2R_16918998_SNP [dm6]	C	G	1.648e^-4	0.691	INTERGENIC
3R	2722779	3R_2722779_SNP [dm3] 3R_6897057_SNP [dm6]	A	G	1.650e^-4	0.691	UTR_3_PRIME Antp UPSTREAM CR44932 DOWNSTREAM Antp
X	20423665	X_20423665_SNP [dm3] X_20552638_SNP [dm6]	A	T	1.651e^-4	0.691	INTRON RunxB
X	10715962	X_10715962_SNP [dm3] X_10821929_SNP [dm6]	A	G	1.652e^-4	0.691	UPSTREAM Imp INTRON Imp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	3174283	2L_3174283_SNP [dm3] 2L_3174283_SNP [dm6]	C	T	1.658e^-4	0.691	UPSTREAM CG31698 DOWNSTREAM CG34393 INTRON CG15404	TF binding site mE1_TFBS_inv
X	2287609	X_2287609_SNP [dm3] X_2393576_SNP [dm6]	C	T	1.660e^-4	0.691	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21717585	3R_21717585_SNP [dm3] 3R_25891863_SNP [dm6]	G	C	1.661e^-4	0.691	SYNONYMOUS_CODING Lnk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13072816	2R_13072816_SNP [dm3] 2R_17185311_SNP [dm6]	T	A	1.664e^-4	0.691	EXON CR44387
3R	24695084	3R_24695084_SNP [dm3] 3R_28869362_SNP [dm6]	C	T	1.671e^-4	0.691	NON_SYNONYMOUS_CODING spg UTR_3_PRIME spg	TF binding site mE1_TFBS_chinmo
X	3331729	X_3331729_SNP [dm3] X_3437696_SNP [dm6]	A	C	1.672e^-4	0.691	INTRON CR44999 & 1 other
2L	7216645	2L_7216645_SNP [dm3] 2L_7216645_SNP [dm6]	C	T	1.672e^-4	0.691	INTRON CG13784
3R	2633879	3R_2633879_SNP [dm3] 3R_6808157_SNP [dm6]	T	G	1.673e^-4	0.691	DOWNSTREAM CR42651 INTERGENIC
3R	17007057	3R_17007057_SNP [dm3] 3R_21181335_SNP [dm6]	A	C	1.673e^-4	0.691	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26621265	3R_26621265_SNP [dm3] 3R_30795543_SNP [dm6]	T	G	1.679e^-4	0.692	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	1853658	2R_1853658_SNP [dm3] 2R_5966153_SNP [dm6]	A	T	1.686e^-4	0.694	INTRON CG7881	transposable element FlyBase
2L	15728018	2L_15728018_SNP [dm3] 2L_15728018_SNP [dm6]	T	A	1.697e^-4	0.696	UTR_3_PRIME CycE
3L	12395678	3L_12395678_SNP [dm3] 3L_12402578_SNP [dm6]	A	T	1.705e^-4	0.698	UTR_3_PRIME CG32103 UPSTREAM Smyd4 DOWNSTREAM CG32103
2L	2918680	2L_2918680_SNP [dm3] 2L_2918680_SNP [dm6]	T	G	1.723e^-4	0.703	INTRON lilli
3L	2005159	3L_2005159_SNP [dm3] 3L_2005159_SNP [dm6]	G	C	1.726e^-4	0.703	UTR_3_PRIME CG42841
3L	7437026	3L_7437026_SNP [dm3] 3L_7443926_SNP [dm6]	C	A	1.729e^-4	0.703	INTRON CG42458
X	5086462	X_5086462_SNP [dm3] X_5192429_SNP [dm6]	T	C	1.731e^-4	0.703	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	3222193	3R_3222193_SNP [dm3] 3R_7396471_SNP [dm6]	A	T	1.742e^-4	0.703	INTERGENIC
2R	12396107	2R_12396107_SNP [dm3] 2R_16508602_SNP [dm6]	G	A	1.743e^-4	0.703	INTRON Sema-2a
3R	23190671	3R_23190671_SNP [dm3] 3R_27364949_SNP [dm6]	C	T	1.744e^-4	0.703	INTRON CG42534
3R	2594080	3R_2594080_SNP [dm3] 3R_6768358_SNP [dm6]	C	T	1.756e^-4	0.705	INTRON CR42721	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	2839941	3R_2839941_SNP [dm3] 3R_7014219_SNP [dm6]	T	A	1.762e^-4	0.705	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4348796	X_4348796_DEL [dm3] X_4454763_DEL [dm6]	AGTA	A	1.763e^-4	0.705	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2676435	3R_2676435_SNP [dm3] 3R_6850713_SNP [dm6]	A	T	1.765e^-4	0.705	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	3241552	X_3241552_SNP [dm3] X_3347519_SNP [dm6]	T	C	1.772e^-4	0.705	INTRON CR44886	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9997174	3R_9997174_SNP [dm3] 3R_14171452_SNP [dm6]	C	G	1.773e^-4	0.705	UTR_3_PRIME Dop1R1
2R	15774339	2R_15774339_SNP [dm3] 2R_19886834_SNP [dm6]	C	A	1.774e^-4	0.705	INTERGENIC
3L	18300782	3L_18300782_SNP [dm3] 3L_18307682_SNP [dm6]	C	A	1.781e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2382241	3L_2382241_SNP [dm3] 3L_2382241_SNP [dm6]	T	C	1.794e^-4	0.71	INTRON CG45186	TF binding site mE1_TFBS_sens
2L	1835028	2L_1835028_SNP [dm3] 2L_1835028_SNP [dm6]	T	G	1.797e^-4	0.71	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7796718	3L_7796718_SNP [dm3] 3L_7803618_SNP [dm6]	G	A	1.812e^-4	0.712	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19158417	2R_19158417_SNP [dm3] 2R_23270894_SNP [dm6]	A	G	1.816e^-4	0.712	NON_SYNONYMOUS_CODING CG13540 DOWNSTREAM ord	TF binding site BDTNP1_TFBS_twi
X	12993112	X_12993112_SNP [dm3] X_13099079_SNP [dm6]	C	T	1.817e^-4	0.712	INTRON CG43313
2L	16580743	2L_16580743_SNP [dm3] 2L_16580743_SNP [dm6]	T	G	1.823e^-4	0.712	INTRON CG42389
2L	4207364	2L_4207364_SNP [dm3] 2L_4207364_SNP [dm6]	G	A	1.823e^-4	0.712	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20876137	3L_20876137_SNP [dm3] 3L_20883037_SNP [dm6]	T	A	1.825e^-4	0.712	INTRON CG32432
3L	18932517	3L_18932517_SNP [dm3] 3L_18939417_SNP [dm6]	T	C	1.829e^-4	0.712	INTRON CG32204
2L	1866168	2L_1866168_SNP [dm3] 2L_1866168_SNP [dm6]	A	T	1.859e^-4	0.719	INTRON CG31663
3R	21997091	3R_21997091_SNP [dm3] 3R_26171369_SNP [dm6]	A	G	1.866e^-4	0.719	UPSTREAM CG31323 INTRON CG31323
2L	941532	2L_941532_SNP [dm3] 2L_941532_SNP [dm6]	A	G	1.871e^-4	0.719	INTRON CG4341
3R	14347858	3R_14347858_SNP [dm3] 3R_18522136_SNP [dm6]	A	C	1.872e^-4	0.719	INTRON fru
2R	12107392	2R_12107392_SNP [dm3] 2R_16219887_SNP [dm6]	C	G	1.873e^-4	0.719	UPSTREAM tRNA:CR30240 & 1 other DOWNSTREAM tRNA:CR30239 INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	22202149	3L_22202149_SNP [dm3] 3L_22209049_SNP [dm6]	G	A	1.885e^-4	0.719	INTRON olf413
3R	9954837	3R_9954837_SNP [dm3] 3R_14129115_SNP [dm6]	A	C	1.886e^-4	0.719	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16907587	3R_16907587_SNP [dm3] 3R_21081865_SNP [dm6]	T	A	1.887e^-4	0.719	UPSTREAM HHEX INTERGENIC
3R	25413988	3R_25413988_SNP [dm3] 3R_29588266_SNP [dm6]	T	A	1.896e^-4	0.719	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
3L	18143989	3L_18143989_SNP [dm3] 3L_18150889_SNP [dm6]	C	A	1.897e^-4	0.719	SPLICE_SITE_REGION CG7330 SYNONYMOUS_CODING CG7330
3R	17445321	3R_17445321_INS [dm3] 3R_21619599_INS [dm6]	C	CTC	1.901e^-4	0.719	UPSTREAM InR DOWNSTREAM E2f INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr mE1_TFBS_zfh1
2R	17020434	2R_17020434_SNP [dm3] 2R_21132929_SNP [dm6]	T	G	1.909e^-4	0.719	INTRON Magi
2L	6092162	2L_6092162_SNP [dm3] 2L_6092162_SNP [dm6]	T	C	1.911e^-4	0.719	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075 INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	4703026	X_4703026_DEL [dm3] X_4808993_DEL [dm6]	AGCTTAAGGTTT...	A	1.926e^-4	0.719	INTERGENIC
2L	13464479	2L_13464479_SNP [dm3] 2L_13464479_SNP [dm6]	G	A	1.929e^-4	0.719	INTRON CG42784
X	9557437	X_9557437_INS [dm3] X_9663404_INS [dm6]	C	CTGC	1.931e^-4	0.719	UPSTREAM CG3106 INTERGENIC
2R	17625790	2R_17625790_SNP [dm3] 2R_21738285_SNP [dm6]	T	A	1.935e^-4	0.719	INTERGENIC
3L	18789584	3L_18789584_SNP [dm3] 3L_18796484_SNP [dm6]	A	C	1.939e^-4	0.719	INTRON ftz-f1
2L	10926754	2L_10926754_SNP [dm3] 2L_10926754_SNP [dm6]	A	T	1.944e^-4	0.719	INTRON dpr2
3L	2494382	3L_2494382_SNP [dm3] 3L_2494382_SNP [dm6]	A	T	1.945e^-4	0.719	UPSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad
3L	18565146	3L_18565146_SNP [dm3] 3L_18572046_SNP [dm6]	G	A	1.945e^-4	0.719	INTRON AstC-R1
3L	12311293	3L_12311293_SNP [dm3] 3L_12318193_SNP [dm6]	A	T	1.948e^-4	0.719	INTERGENIC
2R	5299551	2R_5299551_SNP [dm3] 2R_9412046_SNP [dm6]	G	A	1.949e^-4	0.719	INTRON wun
3R	3245139	3R_3245139_INS [dm3] 3R_7419417_INS [dm6]	T	TGCCAAT	1.954e^-4	0.719	CODON_INSERTION CG31544 UPSTREAM CG34023
3R	25601792	3R_25601792_SNP [dm3] 3R_29776070_SNP [dm6]	C	G	1.955e^-4	0.719	INTRON kay
3R	25064266	3R_25064266_SNP [dm3] 3R_29238544_SNP [dm6]	A	T	1.961e^-4	0.719	DOWNSTREAM CG31427 INTRON CG11951
3L	13189590	3L_13189590_SNP [dm3] 3L_13196490_SNP [dm6]	C	T	1.968e^-4	0.719	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15749687	3R_15749687_SNP [dm3] 3R_19923965_SNP [dm6]	A	G	1.972e^-4	0.719	SPLICE_SITE_REGION CG4462 INTRON CG4462	TF binding site mE1_TFBS_cad
3L	7458986	3L_7458986_SNP [dm3] 3L_7465886_SNP [dm6]	G	T	1.973e^-4	0.719	INTRON Tsp66A & 2 others
2L	13042593	2L_13042593_SNP [dm3] 2L_13042593_SNP [dm6]	C	A	1.979e^-4	0.719	INTRON CG9932
2L	1449834	2L_1449834_SNP [dm3] 2L_1449834_SNP [dm6]	A	G	1.982e^-4	0.719	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	18444399	3R_18444399_SNP [dm3] 3R_22618677_SNP [dm6]	C	A	1.984e^-4	0.719	DOWNSTREAM CG31161 INTRON mRpL45	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25064210	3R_25064210_SNP [dm3] 3R_29238488_SNP [dm6]	A	C	1.986e^-4	0.719	DOWNSTREAM CG31427 INTRON CG11951
3L	3996913	3L_3996913_SNP [dm3] 3L_3996913_SNP [dm6]	G	A	1.986e^-4	0.719	INTERGENIC
3L	18562177	3L_18562177_SNP [dm3] 3L_18569077_SNP [dm6]	T	C	1.987e^-4	0.719	INTRON AstC-R1
3L	7806804	3L_7806804_SNP [dm3] 3L_7813704_SNP [dm6]	G	A	1.989e^-4	0.719	UTR_3_PRIME Pdp1 DOWNSTREAM Pdp1
2L	13938229	2L_13938229_SNP [dm3] 2L_13938229_SNP [dm6]	C	T	1.993e^-4	0.719	INTRON Ance-3
3L	9310579	3L_9310579_SNP [dm3] 3L_9317479_SNP [dm6]	G	C	1.994e^-4	0.719	INTERGENIC
3L	8503087	3L_8503087_SNP [dm3] 3L_8509987_SNP [dm6]	T	A	2.008e^-4	0.722	UPSTREAM CG6745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	6848055	2R_6848055_INS [dm3] 2R_10960550_INS [dm6]	T	TTCTCATTT	2.019e^-4	0.722	INTERGENIC
3L	14901556	3L_14901556_SNP [dm3] 3L_14908456_SNP [dm6]	C	T	2.025e^-4	0.722	INTRON DCX-EMAP	TF binding site BDTNP1_TFBS_twi
X	21248249	X_21248249_SNP [dm3] X_21377222_SNP [dm6]	A	C	2.026e^-4	0.722	INTRON slgA
2L	16772566	2L_16772566_SNP [dm3] 2L_16772566_SNP [dm6]	G	C	2.032e^-4	0.722	INTRON Mhc	TF binding site BDTNP1_TFBS_twi
3R	8394658	3R_8394658_SNP [dm3] 3R_12568936_SNP [dm6]	C	T	2.034e^-4	0.722	INTRON Octbeta2R
3R	2623561	3R_2623561_SNP [dm3] 3R_6797839_SNP [dm6]	A	C	2.036e^-4	0.722	INTRON Dfd	regulatory region FlyBase REDfly_CRMs
3L	11999434	3L_11999434_SNP [dm3] 3L_12006334_SNP [dm6]	T	A	2.039e^-4	0.722	INTRON CG6928
3L	4739317	3L_4739317_SNP [dm3] 3L_4739317_SNP [dm6]	A	T	2.043e^-4	0.722	INTRON RhoGEF64C
3L	8502971	3L_8502971_SNP [dm3] 3L_8509871_SNP [dm6]	T	C	2.051e^-4	0.722	UPSTREAM CG6745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9633902	3R_9633902_SNP [dm3] 3R_13808180_SNP [dm6]	C	T	2.055e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3669067	2L_3669067_SNP [dm3] 2L_3669067_SNP [dm6]	A	G	2.058e^-4	0.722	SYNONYMOUS_CODING CG42463 UPSTREAM Sfp24Ba DOWNSTREAM Sfp24Bb INTRON CG34340
2R	9778299	2R_9778299_SNP [dm3] 2R_13890794_SNP [dm6]	C	T	2.059e^-4	0.722	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_sens
X	4606511	X_4606511_SNP [dm3] X_4712478_SNP [dm6]	G	A	2.069e^-4	0.722	INTRON Proc-R
2R	11039635	2R_11039635_SNP [dm3] 2R_15152130_SNP [dm6]	T	A	2.070e^-4	0.722	INTERGENIC
3L	3939885	3L_3939885_SNP [dm3] 3L_3939885_SNP [dm6]	C	T	2.070e^-4	0.722	SPLICE_SITE_REGION CG12766 SYNONYMOUS_CODING CG12766 UPSTREAM CR43916
2R	1435411	2R_1435411_SNP [dm3] 2R_5547906_SNP [dm6]	A	T	2.077e^-4	0.722	SYNONYMOUS_CODING CG30438
2L	9397009	2L_9397009_SNP [dm3] 2L_9397009_SNP [dm6]	A	C	2.086e^-4	0.722	UTR_3_PRIME CG4438 DOWNSTREAM CG4438 INTRON Shawl
3L	13483428	3L_13483428_SNP [dm3] 3L_13490328_SNP [dm6]	T	A	2.087e^-4	0.722	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3L	18326240	3L_18326240_SNP [dm3] 3L_18333140_SNP [dm6]	T	A	2.093e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	5513753	2L_5513753_SNP [dm3] 2L_5513753_SNP [dm6]	A	G	2.098e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	3459933	3L_3459933_SNP [dm3] 3L_3459933_SNP [dm6]	C	A	2.099e^-4	0.722	NON_SYNONYMOUS_CODING eIF5B	TF binding site BDTNP1_TFBS_dl
X	14246587	X_14246587_INS [dm3] X_14352554_INS [dm6]	T	TT	2.099e^-4	0.722	INTRON dpr8
2R	11152298	2R_11152298_SNP [dm3] 2R_15264793_SNP [dm6]	A	C	2.102e^-4	0.722	INTRON Trpm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12406251	2L_12406251_SNP [dm3] 2L_12406251_SNP [dm6]	T	G	2.104e^-4	0.722	DOWNSTREAM vir-1 INTRON vir-1
2R	7342318	2R_7342318_SNP [dm3] 2R_11454813_SNP [dm6]	T	C	2.104e^-4	0.722	INTRON E_Pc_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	655855	2L_655855_SNP [dm3] 2L_655855_SNP [dm6]	G	T	2.105e^-4	0.722	NON_SYNONYMOUS_CODING ds
2R	14631844	2R_14631844_SNP [dm3] 2R_18744339_SNP [dm6]	G	A	2.115e^-4	0.724	SYNONYMOUS_CODING CG17821 UPSTREAM CG18609 INTRON Hs3st-A
3R	26870070	3R_26870070_SNP [dm3] 3R_31044348_SNP [dm6]	G	T	2.124e^-4	0.724	DOWNSTREAM CG33920 INTRON CanA1
2L	16239440	2L_16239440_SNP [dm3] 2L_16239440_SNP [dm6]	T	C	2.124e^-4	0.724	SYNONYMOUS_CODING CG42817
3R	14998646	3R_14998646_SNP [dm3] 3R_19172924_SNP [dm6]	G	T	2.128e^-4	0.724	INTERGENIC
2L	14771788	2L_14771788_SNP [dm3] 2L_14771788_SNP [dm6]	A	T	2.138e^-4	0.724	INTERGENIC
2R	14191675	2R_14191675_SNP [dm3] 2R_18304170_SNP [dm6]	A	T	2.139e^-4	0.724	UPSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	5743901	2R_5743901_SNP [dm3] 2R_9856396_SNP [dm6]	A	T	2.141e^-4	0.724	UTR_5_PRIME CG1516 INTRON CG1516
3R	26854385	3R_26854385_SNP [dm3] 3R_31028663_SNP [dm6]	T	G	2.147e^-4	0.724	INTERGENIC
3R	17082946	3R_17082946_SNP [dm3] 3R_21257224_SNP [dm6]	T	C	2.149e^-4	0.724	INTRON ETHR
3R	25360514	3R_25360514_SNP [dm3] 3R_29534792_SNP [dm6]	T	A	2.153e^-4	0.724	INTRON CR43613	TF binding site mE1_TFBS_chinmo
3L	18144011	3L_18144011_SNP [dm3] 3L_18150911_SNP [dm6]	A	C	2.158e^-4	0.724	INTRON CG7330
3L	13902876	3L_13902876_SNP [dm3] 3L_13909776_SNP [dm6]	T	C	2.159e^-4	0.724	SPLICE_SITE_REGION Rgl INTRON Rgl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25589698	3R_25589698_SNP [dm3] 3R_29763976_SNP [dm6]	A	C	2.167e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25590258	3R_25590258_SNP [dm3] 3R_29764536_SNP [dm6]	G	A	2.167e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17362398	3R_17362398_SNP [dm3] 3R_21536676_SNP [dm6]	C	G	2.178e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	876358	3L_876358_SNP [dm3] 3L_876358_SNP [dm6]	G	T	2.179e^-4	0.724	DOWNSTREAM CG13907 INTRON CG32479
3L	22138793	3L_22138793_SNP [dm3] 3L_22145693_SNP [dm6]	C	T	2.179e^-4	0.724	INTRON olf413
3R	9895932	3R_9895932_INS [dm3] 3R_14070210_INS [dm6]	G	AA	2.181e^-4	0.724	INTRON foxo
3L	3460430	3L_3460430_SNP [dm3] 3L_3460430_SNP [dm6]	C	G	2.185e^-4	0.724	UTR_5_PRIME eIF5B UPSTREAM armi	TF binding site BDTNP1_TFBS_dl
3R	2633968	3R_2633968_SNP [dm3] 3R_6808246_SNP [dm6]	C	A	2.188e^-4	0.724	DOWNSTREAM CR42651 INTERGENIC
2L	1580248	2L_1580248_SNP [dm3] 2L_1580248_SNP [dm6]	T	A	2.198e^-4	0.724	INTRON haf
3L	18804687	3L_18804687_SNP [dm3] 3L_18811587_SNP [dm6]	A	G	2.209e^-4	0.724	INTRON CG14073
2L	13687903	2L_13687903_SNP [dm3] 2L_13687903_SNP [dm6]	C	T	2.217e^-4	0.724	INTRON CG31814
3L	11297658	3L_11297658_SNP [dm3] 3L_11304558_SNP [dm6]	C	A	2.217e^-4	0.724	INTERGENIC
3L	10235345	3L_10235345_SNP [dm3] 3L_10242245_SNP [dm6]	T	G	2.226e^-4	0.724	DOWNSTREAM CR44541 INTERGENIC
3R	19182036	3R_19182036_SNP [dm3] 3R_23356314_SNP [dm6]	C	T	2.227e^-4	0.724	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6635724	2R_6635724_SNP [dm3] 2R_10748219_SNP [dm6]	A	C	2.234e^-4	0.724	INTRON CG33144
2L	1996733	2L_1996733_DEL [dm3] 2L_1996733_DEL [dm6]	GAAAATGAGGG...	G	2.234e^-4	0.724	DOWNSTREAM CG33543 INTERGENIC
3L	18150461	3L_18150461_SNP [dm3] 3L_18157361_SNP [dm6]	G	A	2.241e^-4	0.724	INTRON CG13699
X	6608734	X_6608734_SNP [dm3] X_6714701_SNP [dm6]	T	A	2.246e^-4	0.724	INTRON CG14441	TF binding site BDTNP1_TFBS_dl
3L	15261561	3L_15261561_SNP [dm3] 3L_15268461_SNP [dm6]	T	A	2.254e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	6092720	2L_6092720_SNP [dm3] 2L_6092720_SNP [dm6]	T	C	2.260e^-4	0.724	INTRON Kr-h1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	21988409	3R_21988409_SNP [dm3] 3R_26162687_SNP [dm6]	T	G	2.264e^-4	0.724	INTERGENIC
3R	25413970	3R_25413970_SNP [dm3] 3R_29588248_SNP [dm6]	A	T	2.265e^-4	0.724	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
X	13219298	X_13219298_SNP [dm3] X_13325265_SNP [dm6]	T	A	2.266e^-4	0.724	INTRON IP3K2
2R	18595547	2R_18595547_SNP [dm3] 2R_22708042_SNP [dm6]	T	C	2.277e^-4	0.724	SYNONYMOUS_CODING CG30275 DOWNSTREAM Obp58d EXON CR43735
3R	16906238	3R_16906238_SNP [dm3] 3R_21080516_SNP [dm6]	G	T	2.278e^-4	0.724	SYNONYMOUS_CODING HHEX	TF binding site mE1_TFBS_chinmo
2R	8584231	2R_8584231_INS [dm3] 2R_12696726_INS [dm6]	C	CC	2.285e^-4	0.724	INTERGENIC
3L	22355089	3L_22355089_SNP [dm3] 3L_22361989_SNP [dm6]	G	T	2.295e^-4	0.724	INTRON Ten-m	TF binding site mE1_TFBS_HSA
3R	2722749	3R_2722749_SNP [dm3] 3R_6897027_SNP [dm6]	T	A	2.301e^-4	0.724	UTR_3_PRIME Antp UPSTREAM CR44932 DOWNSTREAM Antp
2L	15482492	2L_15482492_SNP [dm3] 2L_15482492_SNP [dm6]	G	A	2.301e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2770382	2L_2770382_SNP [dm3] 2L_2770382_SNP [dm6]	T	C	2.302e^-4	0.724	SYNONYMOUS_CODING CG2862 UPSTREAM colt DOWNSTREAM CG15399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	3003656	3R_3003656_SNP [dm3] 3R_7177934_SNP [dm6]	A	T	2.304e^-4	0.724	INTRON sas
3L	911152	3L_911152_SNP [dm3] 3L_911152_SNP [dm6]	G	T	2.312e^-4	0.724	UTR_3_PRIME nerfin-1	regulatory region REDfly_CRMs
3R	15303134	3R_15303134_SNP [dm3] 3R_19477412_SNP [dm6]	A	G	2.314e^-4	0.724	INTRON Dys
3R	25589833	3R_25589833_DEL [dm3] 3R_29764111_DEL [dm6]	ACCAA	A	2.321e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6560534	2R_6560534_SNP [dm3] 2R_10673029_SNP [dm6]	C	T	2.326e^-4	0.724	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18152900	3L_18152900_SNP [dm3] 3L_18159800_SNP [dm6]	A	C	2.339e^-4	0.724	INTRON CG13699
3L	13379447	3L_13379447_SNP [dm3] 3L_13386347_SNP [dm6]	G	A	2.342e^-4	0.724	UTR_3_PRIME CG10171 DOWNSTREAM CG14110	TF binding site BDTNP1_TFBS_twi
3R	19182159	3R_19182159_SNP [dm3] 3R_23356437_SNP [dm6]	T	A	2.350e^-4	0.724	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	3554628	2L_3554628_DEL [dm3] 2L_3554628_DEL [dm6]	TATTGGGCTAAT...	T	2.350e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	947777	2L_947777_SNP [dm3] 2L_947777_SNP [dm6]	G	T	2.351e^-4	0.724	INTRON CG4341
3R	23403495	3R_23403495_SNP [dm3] 3R_27577773_SNP [dm6]	G	T	2.355e^-4	0.724	INTRON wdb
3L	18565360	3L_18565360_SNP [dm3] 3L_18572260_SNP [dm6]	T	C	2.356e^-4	0.724	INTRON AstC-R1
2L	19372942	2L_19372942_SNP [dm3] 2L_19372942_SNP [dm6]	T	C	2.358e^-4	0.724	DOWNSTREAM CG17349 INTERGENIC
3R	27425647	3R_27425647_SNP [dm3] 3R_31599925_SNP [dm6]	T	C	2.362e^-4	0.724	INTRON CycG	TF binding site mE1_TFBS_cad
3L	12824501	3L_12824501_SNP [dm3] 3L_12831401_SNP [dm6]	C	T	2.365e^-4	0.724	INTRON CG10960	TF binding site mE1_TFBS_zfh1
2L	2096692	2L_2096692_SNP [dm3] 2L_2096692_SNP [dm6]	T	G	2.379e^-4	0.724	INTRON dpr3
2L	4964496	2L_4964496_SNP [dm3] 2L_4964496_SNP [dm6]	T	C	2.381e^-4	0.724	SYNONYMOUS_CODING CG34124 EXON CR43824	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17938216	X_17938216_SNP [dm3] X_18044183_SNP [dm6]	G	T	2.393e^-4	0.724	INTRON Sh & 1 other
3L	14988158	3L_14988158_SNP [dm3] 3L_14995058_SNP [dm6]	T	C	2.398e^-4	0.724	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7147253	2R_7147253_DEL [dm3] 2R_11259748_DEL [dm6]	GCATGTCCA	T	2.400e^-4	0.724	DOWNSTREAM CG13223 INTRON Cpr47Ec
3L	19510198	3L_19510198_SNP [dm3] 3L_19517098_SNP [dm6]	A	T	2.401e^-4	0.724	DOWNSTREAM Cpr76Ba INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14988181	3L_14988181_SNP [dm3] 3L_14995081_SNP [dm6]	G	T	2.401e^-4	0.724	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25081574	3R_25081574_SNP [dm3] 3R_29255852_SNP [dm6]	T	G	2.401e^-4	0.724	UPSTREAM stg & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11915636	3L_11915636_SNP [dm3] 3L_11922536_SNP [dm6]	C	T	2.404e^-4	0.724	UTR_3_PRIME CG11588 DOWNSTREAM CG5718 & 1 other INTRON CG44837
2L	1090029	2L_1090029_SNP [dm3] 2L_1090029_SNP [dm6]	A	G	2.405e^-4	0.724	INTRON CG4629	TF binding site BDTNP1_TFBS_da
3L	876286	3L_876286_INS [dm3] 3L_876286_INS [dm6]	T	TTT	2.406e^-4	0.724	INTRON CG32479
2R	4626708	2R_4626708_SNP [dm3] 2R_8739203_SNP [dm6]	C	A	2.407e^-4	0.724	INTRON CG8740	TF binding site mE1_TFBS_cad
2R	18038469	2R_18038469_SNP [dm3] 2R_22150964_SNP [dm6]	T	C	2.418e^-4	0.724	INTRON a
X	21436988	X_21436988_SNP [dm3] X_21565961_SNP [dm6]	A	G	2.418e^-4	0.724	INTERGENIC
2L	4203340	2L_4203340_SNP [dm3] 2L_4203340_SNP [dm6]	G	A	2.423e^-4	0.724	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2L	9386773	2L_9386773_SNP [dm3] 2L_9386773_SNP [dm6]	C	T	2.424e^-4	0.724	UPSTREAM Aldh INTRON Shawl
2L	3804595	2L_3804595_SNP [dm3] 2L_3804595_SNP [dm6]	G	C	2.425e^-4	0.724	INTRON Reph	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	15988978	X_15988978_SNP [dm3] X_16094945_SNP [dm6]	A	G	2.436e^-4	0.724	SYNONYMOUS_CODING CG42354 UTR_3_PRIME CG42353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24748204	3R_24748204_SNP [dm3] 3R_28922482_SNP [dm6]	C	T	2.440e^-4	0.724	UTR_3_PRIME Doa UPSTREAM CG11828 DOWNSTREAM Doa
3R	2730120	3R_2730120_SNP [dm3] 3R_6904398_SNP [dm6]	T	G	2.442e^-4	0.724	INTRON Antp EXON CR43252	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7139156	2R_7139156_SNP [dm3] 2R_11251651_SNP [dm6]	T	C	2.445e^-4	0.724	DOWNSTREAM Cpr47Ea INTRON Or47a
3R	3060563	3R_3060563_SNP [dm3] 3R_7234841_SNP [dm6]	A	T	2.446e^-4	0.724	INTRON CG14608
3R	9954651	3R_9954651_SNP [dm3] 3R_14128929_SNP [dm6]	G	C	2.452e^-4	0.724	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8584102	2R_8584102_SNP [dm3] 2R_12696597_SNP [dm6]	T	A	2.455e^-4	0.724	INTERGENIC
3R	13574044	3R_13574044_SNP [dm3] 3R_17748322_SNP [dm6]	T	C	2.457e^-4	0.724	DOWNSTREAM TyrRII INTERGENIC
X	7127715	X_7127715_DEL [dm3] X_7233682_DEL [dm6]	GG	G	2.462e^-4	0.724	INTRON CR44357 & 1 other
3R	2702130	3R_2702130_SNP [dm3] 3R_6876408_SNP [dm6]	A	G	2.469e^-4	0.724	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3500905	2L_3500905_SNP [dm3] 2L_3500905_SNP [dm6]	G	T	2.480e^-4	0.724	DOWNSTREAM tim INTRON tim
3L	8504292	3L_8504292_SNP [dm3] 3L_8511192_SNP [dm6]	G	A	2.483e^-4	0.724	SYNONYMOUS_CODING CG6745
3L	2707884	3L_2707884_SNP [dm3] 3L_2707884_SNP [dm6]	T	A	2.486e^-4	0.724	INTRON Fife
2L	4963986	2L_4963986_SNP [dm3] 2L_4963986_SNP [dm6]	G	A	2.488e^-4	0.724	INTRON CG34124 EXON CR43824	TF binding site mE1_TFBS_cad
2L	4963990	2L_4963990_SNP [dm3] 2L_4963990_SNP [dm6]	A	T	2.488e^-4	0.724	INTRON CG34124 EXON CR43824	TF binding site mE1_TFBS_cad
3L	11251614	3L_11251614_SNP [dm3] 3L_11258514_SNP [dm6]	C	A	2.491e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14405121	3L_14405121_SNP [dm3] 3L_14412021_SNP [dm6]	C	T	2.492e^-4	0.724	DOWNSTREAM bbg INTRON CG3919
X	1453576	X_1453576_SNP [dm3] X_1559543_SNP [dm6]	C	T	2.493e^-4	0.724	INTRON Mur2B
3L	10013140	3L_10013140_SNP [dm3] 3L_10020040_SNP [dm6]	T	A	2.495e^-4	0.724	INTRON dpr6
3L	14332102	3L_14332102_SNP [dm3] 3L_14339002_SNP [dm6]	G	T	2.500e^-4	0.724	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4153272	2L_4153272_DEL [dm3] 2L_4153272_DEL [dm6]	GGTG	G	2.501e^-4	0.724	INTERGENIC
3L	21922083	3L_21922083_SNP [dm3] 3L_21928983_SNP [dm6]	A	G	2.504e^-4	0.724	UTR_3_PRIME mub
3L	13919717	3L_13919717_SNP [dm3] 3L_13926617_SNP [dm6]	G	A	2.510e^-4	0.724	SYNONYMOUS_CODING CG8833	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17067704	3L_17067704_SNP [dm3] 3L_17074604_SNP [dm6]	T	A	2.511e^-4	0.724	DOWNSTREAM Rbp6 INTRON Rbp6
X	5900259	X_5900259_SNP [dm3] X_6006226_SNP [dm6]	G	T	2.511e^-4	0.724	DOWNSTREAM CR44498 INTERGENIC
3R	17317863	3R_17317863_SNP [dm3] 3R_21492141_SNP [dm6]	C	T	2.524e^-4	0.724	INTERGENIC
2L	1352305	2L_1352305_SNP [dm3] 2L_1352305_SNP [dm6]	T	C	2.529e^-4	0.724	NON_SYNONYMOUS_CODING CG5556 DOWNSTREAM CG5561
3R	3047908	3R_3047908_SNP [dm3] 3R_7222186_SNP [dm6]	A	G	2.530e^-4	0.724	INTERGENIC
3R	19707702	3R_19707702_SNP [dm3] 3R_23881980_SNP [dm6]	G	T	2.530e^-4	0.724	INTRON Pli
3R	23311858	3R_23311858_SNP [dm3] 3R_27486136_SNP [dm6]	G	T	2.531e^-4	0.724	INTERGENIC
3L	8829418	3L_8829418_SNP [dm3] 3L_8836318_SNP [dm6]	A	G	2.535e^-4	0.724	UPSTREAM CG32026 INTRON dally	TF binding site mE1_TFBS_Kr
X	20372666	X_20372666_SNP [dm3] X_20501639_SNP [dm6]	C	G	2.535e^-4	0.724	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20372668	X_20372668_SNP [dm3] X_20501641_SNP [dm6]	A	C	2.535e^-4	0.724	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22741722	3R_22741722_SNP [dm3] 3R_26916000_SNP [dm6]	A	C	2.538e^-4	0.724	INTRON sda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	8454031	3L_8454031_SNP [dm3] 3L_8460931_SNP [dm6]	C	A	2.538e^-4	0.724	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9956819	3R_9956819_SNP [dm3] 3R_14131097_SNP [dm6]	G	C	2.540e^-4	0.724	SYNONYMOUS_CODING CG14356 DOWNSTREAM RpII140	TF binding site mE1_TFBS_cad
2L	667490	2L_667490_SNP [dm3] 2L_667490_SNP [dm6]	C	T	2.541e^-4	0.724	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4757094	2L_4757094_SNP [dm3] 2L_4757094_SNP [dm6]	A	G	2.548e^-4	0.724	INTRON CG15630
3L	3816723	3L_3816723_SNP [dm3] 3L_3816723_SNP [dm6]	G	A	2.551e^-4	0.724	SYNONYMOUS_CODING Scsalpha UPSTREAM CR45034 & 1 other
3L	18070128	3L_18070128_SNP [dm3] 3L_18077028_SNP [dm6]	A	G	2.553e^-4	0.724	UPSTREAM CR45392 INTERGENIC
2R	1887525	2R_1887525_SNP [dm3] 2R_6000020_SNP [dm6]	C	T	2.557e^-4	0.724	SYNONYMOUS_CODING Src42A INTRON Src42A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10448439	3L_10448439_SNP [dm3] 3L_10455339_SNP [dm6]	A	G	2.569e^-4	0.724	INTERGENIC
2L	22420522	2L_22420522_SNP [dm3] 2L_22527790_SNP [dm6]	A	C	2.572e^-4	0.724	INTERGENIC
2L	12999595	2L_12999595_SNP [dm3] 2L_12999595_SNP [dm6]	G	T	2.574e^-4	0.724	INTRON CG12404
3L	11921383	3L_11921383_SNP [dm3] 3L_11928283_SNP [dm6]	T	A	2.574e^-4	0.724	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2676473	3R_2676473_SNP [dm3] 3R_6850751_SNP [dm6]	C	T	2.575e^-4	0.724	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11144839	3L_11144839_SNP [dm3] 3L_11151739_SNP [dm6]	G	T	2.585e^-4	0.724	UPSTREAM CG6216 INTRON CG32082
X	8299432	X_8299432_SNP [dm3] X_8405399_SNP [dm6]	A	G	2.587e^-4	0.724	SYNONYMOUS_CODING CG11190 DOWNSTREAM CG10555	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11682598	3R_11682598_SNP [dm3] 3R_15856876_SNP [dm6]	T	C	2.591e^-4	0.724	NON_SYNONYMOUS_CODING Hmt-1 DOWNSTREAM CG31183	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1444345	X_1444345_SNP [dm3] X_1550312_SNP [dm6]	G	A	2.597e^-4	0.724	INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	3245248	3R_3245248_SNP [dm3] 3R_7419526_SNP [dm6]	G	A	2.616e^-4	0.724	NON_SYNONYMOUS_CODING CG31544 UPSTREAM CG34023
2R	9930630	2R_9930630_SNP [dm3] 2R_14043125_SNP [dm6]	C	T	2.624e^-4	0.724	INTRON mam
2R	19343516	2R_19343516_SNP [dm3] 2R_23455993_SNP [dm6]	A	T	2.625e^-4	0.724	INTRON CG43795
3R	2750540	3R_2750540_SNP [dm3] 3R_6924818_SNP [dm6]	G	A	2.627e^-4	0.724	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3798572	2L_3798572_SNP [dm3] 2L_3798572_SNP [dm6]	A	G	2.627e^-4	0.724	NON_SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
3L	9907697	3L_9907697_SNP [dm3] 3L_9914597_SNP [dm6]	A	G	2.632e^-4	0.724	INTRON CG34356
2R	11866147	2R_11866147_SNP [dm3] 2R_15978642_SNP [dm6]	C	G	2.634e^-4	0.724	NON_SYNONYMOUS_CODING Strn-Mlck
X	4704984	X_4704984_INS [dm3] X_4810951_INS [dm6]	T	TT	2.649e^-4	0.724	INTERGENIC
3R	2680814	3R_2680814_SNP [dm3] 3R_6855092_SNP [dm6]	G	A	2.655e^-4	0.724	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	22207811	3L_22207811_SNP [dm3] 3L_22214711_SNP [dm6]	A	T	2.659e^-4	0.724	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16794249	2L_16794249_SNP [dm3] 2L_16794249_SNP [dm6]	A	G	2.661e^-4	0.724	NON_SYNONYMOUS_CODING Ugt36Ba DOWNSTREAM CG17928	TF binding site mE1_TFBS_Trl
X	5913134	X_5913134_SNP [dm3] X_6019101_SNP [dm6]	T	C	2.673e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14984644	3L_14984644_SNP [dm3] 3L_14991544_SNP [dm6]	T	C	2.683e^-4	0.724	UTR_3_PRIME mnd UPSTREAM Zip71B
2L	9491046	2L_9491046_SNP [dm3] 2L_9491046_SNP [dm6]	A	T	2.685e^-4	0.724	DOWNSTREAM Gdi INTERGENIC
X	6808698	X_6808698_SNP [dm3] X_6914665_SNP [dm6]	T	C	2.690e^-4	0.724	INTRON CG14431	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2592366	3R_2592366_SNP [dm3] 3R_6766644_SNP [dm6]	A	C	2.700e^-4	0.724	UPSTREAM CR42721 EXON CR44930	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21150093	3L_21150093_SNP [dm3] 3L_21156993_SNP [dm6]	T	A	2.701e^-4	0.724	INTRON Ac78C
2R	14207168	2R_14207168_SNP [dm3] 2R_18319663_SNP [dm6]	T	C	2.701e^-4	0.724	INTRON sbb
2L	14771817	2L_14771817_SNP [dm3] 2L_14771817_SNP [dm6]	A	T	2.704e^-4	0.724	INTERGENIC
3R	12951621	3R_12951621_SNP [dm3] 3R_17125899_SNP [dm6]	T	A	2.707e^-4	0.724	UPSTREAM cher DOWNSTREAM CG17477 INTERGENIC	TF binding site mE1_TFBS_inv
2R	1886837	2R_1886837_SNP [dm3] 2R_5999332_SNP [dm6]	C	G	2.707e^-4	0.724	NON_SYNONYMOUS_CODING Src42A INTRON Src42A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22588248	3L_22588248_SNP [dm3] 3L_22595148_SNP [dm6]	T	C	2.718e^-4	0.724	INTRON CG14459
3L	4689498	3L_4689498_SNP [dm3] 3L_4689498_SNP [dm6]	C	T	2.720e^-4	0.724	SYNONYMOUS_CODING CG18418 UPSTREAM CG7514	TF binding site mE1_TFBS_HSA
3R	20555385	3R_20555385_SNP [dm3] 3R_24729663_SNP [dm6]	C	A	2.725e^-4	0.724	INTRON tok
2R	19112151	2R_19112151_SNP [dm3] 2R_23224628_SNP [dm6]	G	C	2.728e^-4	0.724	INTERGENIC
2L	1060582	2L_1060582_SNP [dm3] 2L_1060582_SNP [dm6]	A	G	2.734e^-4	0.724	INTRON S
3L	14988211	3L_14988211_SNP [dm3] 3L_14995111_SNP [dm6]	G	A	2.735e^-4	0.724	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17666337	3R_17666337_INS [dm3] 3R_21840615_INS [dm6]	T	TA	2.735e^-4	0.724	INTERGENIC
3R	13276425	3R_13276425_SNP [dm3] 3R_17450703_SNP [dm6]	A	G	2.739e^-4	0.724	INTERGENIC
3R	16569542	3R_16569542_SNP [dm3] 3R_20743820_SNP [dm6]	T	C	2.741e^-4	0.724	UTR_5_PRIME CG31199 DOWNSTREAM CG31200 INTRON CG42322
2L	2497994	2L_2497994_DEL [dm3] 2L_2497994_DEL [dm6]	AAATT	A	2.742e^-4	0.724	UTR_3_PRIME oaf DOWNSTREAM oaf
2R	7370902	2R_7370902_SNP [dm3] 2R_11483397_SNP [dm6]	C	T	2.743e^-4	0.724	INTRON inv
3L	18165760	3L_18165760_SNP [dm3] 3L_18172660_SNP [dm6]	A	T	2.743e^-4	0.724	INTRON W
2L	17071749	2L_17071749_SNP [dm3] 2L_17071749_SNP [dm6]	G	T	2.751e^-4	0.724	INTERGENIC
3R	23272630	3R_23272630_SNP [dm3] 3R_27446908_SNP [dm6]	C	G	2.756e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	6609047	X_6609047_SNP [dm3] X_6715014_SNP [dm6]	C	A	2.762e^-4	0.724	INTRON CG14441
3R	3953867	3R_3953867_SNP [dm3] 3R_8128145_SNP [dm6]	T	C	2.774e^-4	0.724	SYNONYMOUS_CODING Gie
3R	2750163	3R_2750163_SNP [dm3] 3R_6924441_SNP [dm6]	C	A	2.778e^-4	0.724	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1352307	2L_1352307_SNP [dm3] 2L_1352307_SNP [dm6]	T	C	2.781e^-4	0.724	SYNONYMOUS_CODING CG5556 DOWNSTREAM CG5561
3R	18896509	3R_18896509_SNP [dm3] 3R_23070787_SNP [dm6]	T	C	2.790e^-4	0.724	UTR_3_PRIME CG13830
3L	18840297	3L_18840297_INS [dm3] 3L_18847197_INS [dm6]	A	AGTTCATTAGGAAATAAATG...	2.794e^-4	0.724	UPSTREAM Indy INTERGENIC
2L	10072644	2L_10072644_DEL [dm3] 2L_10072644_DEL [dm6]	GG	G	2.795e^-4	0.724	INTRON CG44153	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9813624	3L_9813624_SNP [dm3] 3L_9820524_SNP [dm6]	A	C	2.797e^-4	0.724	SYNONYMOUS_CODING CG43897
3L	18144108	3L_18144108_SNP [dm3] 3L_18151008_SNP [dm6]	T	A	2.801e^-4	0.724	INTRON CG7330
X	2287746	X_2287746_DEL [dm3] X_2393713_DEL [dm6]	TG	A	2.805e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19315284	2R_19315284_SNP [dm3] 2R_23427761_SNP [dm6]	T	C	2.806e^-4	0.724	INTRON CG9815
3R	2424802	3R_2424802_SNP [dm3] 3R_6599080_SNP [dm6]	A	G	2.807e^-4	0.724	INTERGENIC
2L	11354857	2L_11354857_SNP [dm3] 2L_11354857_SNP [dm6]	G	A	2.810e^-4	0.724	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
3R	25414057	3R_25414057_SNP [dm3] 3R_29588335_SNP [dm6]	G	T	2.811e^-4	0.724	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
3R	2592713	3R_2592713_SNP [dm3] 3R_6766991_SNP [dm6]	A	G	2.829e^-4	0.724	UPSTREAM CR42721 DOWNSTREAM CR44930 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6768345	2L_6768345_SNP [dm3] 2L_6768345_SNP [dm6]	G	T	2.834e^-4	0.724	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15213042	2R_15213042_INS [dm3] 2R_19325537_INS [dm6]	G	GCC	2.835e^-4	0.724	UPSTREAM Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8503067	3L_8503067_SNP [dm3] 3L_8509967_SNP [dm6]	G	A	2.837e^-4	0.724	UPSTREAM CG6745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3816597	3L_3816597_SNP [dm3] 3L_3816597_SNP [dm6]	T	G	2.839e^-4	0.724	UPSTREAM CR45034 & 1 other INTRON Scsalpha
X	16759348	X_16759348_SNP [dm3] X_16865315_SNP [dm6]	A	T	2.844e^-4	0.724	INTRON CG13003	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20423608	X_20423608_SNP [dm3] X_20552581_SNP [dm6]	T	C	2.845e^-4	0.724	INTRON RunxB
2R	6354422	2R_6354422_SNP [dm3] 2R_10466917_SNP [dm6]	G	A	2.845e^-4	0.724	SYNONYMOUS_CODING Caf1-105	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5770783	2R_5770783_INS [dm3] 2R_9883278_INS [dm6]	C	CTTGATATC	2.849e^-4	0.724	UTR_3_PRIME CG1513 UPSTREAM Sec24AB DOWNSTREAM CR45467
3R	3146983	3R_3146983_SNP [dm3] 3R_7321261_SNP [dm6]	G	A	2.855e^-4	0.724	INTERGENIC
2R	1884056	2R_1884056_SNP [dm3] 2R_5996551_SNP [dm6]	G	A	2.858e^-4	0.724	INTRON Src42A
2L	3435869	2L_3435869_SNP [dm3] 2L_3435869_SNP [dm6]	A	T	2.858e^-4	0.724	INTERGENIC
3L	18326558	3L_18326558_SNP [dm3] 3L_18333458_SNP [dm6]	T	C	2.860e^-4	0.724	INTERGENIC
3L	9576931	3L_9576931_SNP [dm3] 3L_9583831_SNP [dm6]	G	A	2.863e^-4	0.724	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8584099	2R_8584099_SNP [dm3] 2R_12696594_SNP [dm6]	A	C	2.866e^-4	0.724	INTERGENIC
2L	20500725	2L_20500725_SNP [dm3] 2L_20500725_SNP [dm6]	C	G	2.870e^-4	0.724	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18394646	3L_18394646_SNP [dm3] 3L_18401546_SNP [dm6]	C	A	2.871e^-4	0.724	INTERGENIC	regulatory region REDfly_CRMs
X	3795758	X_3795758_SNP [dm3] X_3901725_SNP [dm6]	G	A	2.871e^-4	0.724	INTRON CG42541
3R	16872023	3R_16872023_SNP [dm3] 3R_21046301_SNP [dm6]	T	C	2.875e^-4	0.724	UPSTREAM CG31189 INTRON CG31207	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15525149	X_15525149_SNP [dm3] X_15631116_SNP [dm6]	G	T	2.877e^-4	0.724	INTRON sog	TF binding site BDTNP1_TFBS_dl
3R	17050405	3R_17050405_SNP [dm3] 3R_21224683_SNP [dm6]	C	T	2.879e^-4	0.724	UPSTREAM CR44265 INTRON Nelf-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16371177	2L_16371177_SNP [dm3] 2L_16371177_SNP [dm6]	T	C	2.880e^-4	0.724	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2L	3173933	2L_3173933_SNP [dm3] 2L_3173933_SNP [dm6]	C	G	2.880e^-4	0.724	UPSTREAM CG15404 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13129995	3L_13129995_SNP [dm3] 3L_13136895_SNP [dm6]	T	A	2.883e^-4	0.724	INTRON CG33262
3L	22131021	3L_22131021_SNP [dm3] 3L_22137921_SNP [dm6]	C	T	2.897e^-4	0.724	INTRON olf413	TF binding site mE1_TFBS_Trl
2L	2916105	2L_2916105_SNP [dm3] 2L_2916105_SNP [dm6]	A	T	2.897e^-4	0.724	INTRON lilli
2R	18072992	2R_18072992_SNP [dm3] 2R_22185487_SNP [dm6]	G	T	2.909e^-4	0.724	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	18072995	2R_18072995_SNP [dm3] 2R_22185490_SNP [dm6]	G	A	2.909e^-4	0.724	SYNONYMOUS_CODING MED16 UPSTREAM Vps35	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	8752394	X_8752394_SNP [dm3] X_8858361_SNP [dm6]	C	T	2.914e^-4	0.724	INTRON CG12075
3L	7106200	3L_7106200_SNP [dm3] 3L_7113100_SNP [dm6]	T	A	2.915e^-4	0.724	INTRON form3
3R	7104693	3R_7104693_SNP [dm3] 3R_11278971_SNP [dm6]	A	T	2.917e^-4	0.724	INTRON CR31386
3L	2272041	3L_2272041_SNP [dm3] 3L_2272041_SNP [dm6]	A	T	2.923e^-4	0.724	INTRON yellow-g	TF binding site mE1_TFBS_cad
3L	14413061	3L_14413061_SNP [dm3] 3L_14419961_SNP [dm6]	G	T	2.923e^-4	0.724	INTRON bbg
3L	20885484	3L_20885484_SNP [dm3] 3L_20892384_SNP [dm6]	G	T	2.923e^-4	0.724	INTERGENIC
3L	2272040	3L_2272040_SNP [dm3] 3L_2272040_SNP [dm6]	T	A	2.927e^-4	0.724	INTRON yellow-g	TF binding site mE1_TFBS_cad
3L	14988203	3L_14988203_SNP [dm3] 3L_14995103_SNP [dm6]	C	T	2.929e^-4	0.724	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1891363	2R_1891363_SNP [dm3] 2R_6003858_SNP [dm6]	A	T	2.932e^-4	0.724	INTRON Src42A
3L	11697206	3L_11697206_SNP [dm3] 3L_11704106_SNP [dm6]	T	A	2.939e^-4	0.724	INTRON CG11658
2L	1866142	2L_1866142_SNP [dm3] 2L_1866142_SNP [dm6]	T	A	2.939e^-4	0.724	SPLICE_SITE_REGION CG31663 INTRON CG31663
3R	3015581	3R_3015581_SNP [dm3] 3R_7189859_SNP [dm6]	A	G	2.941e^-4	0.724	INTRON lap
3L	22130810	3L_22130810_DEL [dm3] 3L_22137710_DEL [dm6]	GGAATATGGAAATTATAAAG...	G	2.942e^-4	0.724	INTRON olf413	TF binding site mE1_TFBS_Trl
3L	11921265	3L_11921265_SNP [dm3] 3L_11928165_SNP [dm6]	A	T	2.942e^-4	0.724	INTRON CG44837 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4703024	X_4703024_INS [dm3] X_4808991_INS [dm6]	A	AAAGT	2.948e^-4	0.725	INTERGENIC
3R	14757667	3R_14757667_SNP [dm3] 3R_18931945_SNP [dm6]	T	C	2.956e^-4	0.726	INTRON CG42613	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7147287	2R_7147287_SNP [dm3] 2R_11259782_SNP [dm6]	T	G	2.962e^-4	0.726	INTRON Cpr47Ec
2R	2688386	2R_2688386_SNP [dm3] 2R_6800881_SNP [dm6]	G	C	2.976e^-4	0.729	INTERGENIC
2L	669869	2L_669869_SNP [dm3] 2L_669869_SNP [dm6]	T	G	2.991e^-4	0.73	INTRON ds	TF binding site BDTNP1_TFBS_twi
2R	7147164	2R_7147164_SNP [dm3] 2R_11259659_SNP [dm6]	T	G	2.992e^-4	0.73	NON_SYNONYMOUS_CODING Cpr47Ec DOWNSTREAM CG13223
3L	10239318	3L_10239318_SNP [dm3] 3L_10246218_SNP [dm6]	A	C	2.998e^-4	0.73	UPSTREAM CR44539 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1
2L	3413102	2L_3413102_SNP [dm3] 2L_3413102_SNP [dm6]	A	G	2.998e^-4	0.73	INTRON pgant2
3R	19182615	3R_19182615_SNP [dm3] 3R_23356893_SNP [dm6]	C	T	3.006e^-4	0.731	SYNONYMOUS_CODING Sec13 UPSTREAM ATPsyn-Cf6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8743055	X_8743055_SNP [dm3] X_8849022_SNP [dm6]	A	T	3.023e^-4	0.734	INTRON CG12075
X	5601975	X_5601975_SNP [dm3] X_5707942_SNP [dm6]	G	A	3.024e^-4	0.734	SPLICE_SITE_REGION CG4096 DOWNSTREAM CG33080 INTRON CG4096	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5269139	2L_5269139_SNP [dm3] 2L_5269139_SNP [dm6]	A	T	3.036e^-4	0.735	SPLICE_SITE_REGION Cyp4ac3 DOWNSTREAM Cyp4ac2 INTRON tkv & 1 other
3R	18169656	3R_18169656_SNP [dm3] 3R_22343934_SNP [dm6]	C	G	3.036e^-4	0.735	INTERGENIC
3L	3574059	3L_3574059_SNP [dm3] 3L_3574059_SNP [dm6]	C	A	3.041e^-4	0.735	INTRON Eip63E
3L	8503128	3L_8503128_SNP [dm3] 3L_8510028_SNP [dm6]	G	C	3.055e^-4	0.737	START_GAINED CG6745 UTR_5_PRIME CG6745 UPSTREAM ZC3H3	TF binding site BDTNP1_TFBS_dl
3R	18768761	3R_18768761_SNP [dm3] 3R_22943039_SNP [dm6]	A	T	3.056e^-4	0.737	INTRON klg
3R	11321562	3R_11321562_SNP [dm3] 3R_15495840_SNP [dm6]	C	T	3.073e^-4	0.737	DOWNSTREAM CG5213 INTERGENIC
3R	25429022	3R_25429022_SNP [dm3] 3R_29603300_SNP [dm6]	G	T	3.078e^-4	0.737	INTRON alph
X	4386636	X_4386636_SNP [dm3] X_4492603_SNP [dm6]	T	C	3.083e^-4	0.737	INTRON CR32773
2R	5720596	2R_5720596_SNP [dm3] 2R_9833091_SNP [dm6]	G	T	3.085e^-4	0.737	INTRON hebe
X	6335893	X_6335893_SNP [dm3] X_6441860_SNP [dm6]	G	T	3.092e^-4	0.737	INTRON CG42340
3L	13067074	3L_13067074_SNP [dm3] 3L_13073974_SNP [dm6]	C	T	3.093e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4346184	X_4346184_INS [dm3] X_4452151_INS [dm6]	C	CGTTCCGACC	3.094e^-4	0.737	INTRON CR32773 & 1 other
2R	1922195	2R_1922195_SNP [dm3] 2R_6034690_SNP [dm6]	A	G	3.099e^-4	0.737	INTRON SCAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	18144818	3L_18144818_SNP [dm3] 3L_18151718_SNP [dm6]	T	G	3.121e^-4	0.737	INTRON CG7330
2L	19369604	2L_19369604_INS [dm3] 2L_19369604_INS [dm6]	C	CGAGTAAGC	3.125e^-4	0.737	UPSTREAM CG17349 INTERGENIC
3R	2761117	3R_2761117_SNP [dm3] 3R_6935395_SNP [dm6]	T	C	3.129e^-4	0.737	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7002230	X_7002230_SNP [dm3] X_7108197_SNP [dm6]	A	G	3.139e^-4	0.737	SYNONYMOUS_CODING fz4
3R	2689170	3R_2689170_SNP [dm3] 3R_6863448_SNP [dm6]	A	G	3.141e^-4	0.737	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11049024	2R_11049024_SNP [dm3] 2R_15161519_SNP [dm6]	T	G	3.142e^-4	0.737	INTRON igl
3R	24996775	3R_24996775_SNP [dm3] 3R_29171053_SNP [dm6]	C	T	3.146e^-4	0.737	SYNONYMOUS_CODING CG11898 DOWNSTREAM CG14509	TF binding site mE1_TFBS_kn
X	20425083	X_20425083_SNP [dm3] X_20554056_SNP [dm6]	T	G	3.152e^-4	0.737	INTRON RunxB
2R	17191284	2R_17191284_INS [dm3] 2R_21303779_INS [dm6]	A	AA	3.153e^-4	0.737	INTRON CG42672
3L	8580327	3L_8580327_SNP [dm3] 3L_8587227_SNP [dm6]	A	G	3.154e^-4	0.737	INTRON CG43078	TF binding site mE1_TFBS_chinmo
2L	2389917	2L_2389917_SNP [dm3] 2L_2389917_SNP [dm6]	C	T	3.155e^-4	0.737	NON_SYNONYMOUS_CODING CG43750
2R	3745294	2R_3745294_SNP [dm3] 2R_7857789_SNP [dm6]	T	G	3.158e^-4	0.737	INTRON Dgk	TF binding site mE1_TFBS_inv
3L	9817134	3L_9817134_SNP [dm3] 3L_9824034_SNP [dm6]	C	T	3.160e^-4	0.737	UPSTREAM Ilp5 INTRON CG43897
3R	26846432	3R_26846432_SNP [dm3] 3R_31020710_SNP [dm6]	A	G	3.168e^-4	0.737	INTERGENIC	TF binding site mE1_TFBS_inv
3R	6739104	3R_6739104_SNP [dm3] 3R_10913382_SNP [dm6]	T	G	3.171e^-4	0.737	INTERGENIC
3R	9361761	3R_9361761_SNP [dm3] 3R_13536039_SNP [dm6]	G	T	3.178e^-4	0.737	INTERGENIC
2R	1903790	2R_1903790_SNP [dm3] 2R_6016285_SNP [dm6]	G	A	3.186e^-4	0.737	UPSTREAM Act42A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18595612	2R_18595612_SNP [dm3] 2R_22708107_SNP [dm6]	A	C	3.188e^-4	0.737	DOWNSTREAM Obp58d INTRON CG30275 EXON CR43735
2L	11405387	2L_11405387_DEL [dm3] 2L_11405387_DEL [dm6]	GA	G	3.194e^-4	0.737	INTERGENIC	regulatory region REDfly_CRMs
3L	11237510	3L_11237510_SNP [dm3] 3L_11244410_SNP [dm6]	T	C	3.196e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	3437519	3L_3437519_SNP [dm3] 3L_3437519_SNP [dm6]	T	A	3.198e^-4	0.737	INTRON eIF5B	TF binding site BDTNP1_TFBS_da
3L	3573579	3L_3573579_SNP [dm3] 3L_3573579_SNP [dm6]	A	G	3.199e^-4	0.737	INTRON Eip63E
2R	1909584	2R_1909584_SNP [dm3] 2R_6022079_SNP [dm6]	G	T	3.202e^-4	0.737	SYNONYMOUS_CODING dream	TF binding site mE1_TFBS_cad
3R	2593472	3R_2593472_SNP [dm3] 3R_6767750_SNP [dm6]	T	C	3.204e^-4	0.737	INTRON CR42721
3L	784394	3L_784394_SNP [dm3] 3L_784394_SNP [dm6]	T	G	3.209e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15250059	2R_15250059_INS [dm3] 2R_19362554_INS [dm6]	G	GG	3.214e^-4	0.737	UTR_3_PRIME CG11961 DOWNSTREAM CG11961
2L	8239309	2L_8239309_SNP [dm3] 2L_8239309_SNP [dm6]	C	G	3.224e^-4	0.737	UTR_5_PRIME Pvr UPSTREAM Pvr INTRON Pvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2389928	2L_2389928_SNP [dm3] 2L_2389928_SNP [dm6]	T	C	3.233e^-4	0.737	SYNONYMOUS_CODING CG43750
3R	25080941	3R_25080941_SNP [dm3] 3R_29255219_SNP [dm6]	T	C	3.233e^-4	0.737	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	669308	2L_669308_SNP [dm3] 2L_669308_SNP [dm6]	A	C	3.234e^-4	0.737	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	19223114	3R_19223114_SNP [dm3] 3R_23397392_SNP [dm6]	C	T	3.236e^-4	0.737	INTERGENIC
2R	1908138	2R_1908138_SNP [dm3] 2R_6020633_SNP [dm6]	A	C	3.238e^-4	0.737	UTR_3_PRIME Pngl & 1 other DOWNSTREAM dream & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	23280222	3R_23280222_SNP [dm3] 3R_27454500_SNP [dm6]	T	A	3.241e^-4	0.737	INTERGENIC
2R	6575499	2R_6575499_SNP [dm3] 2R_10687994_SNP [dm6]	T	C	3.243e^-4	0.737	INTRON stan
3R	13767023	3R_13767023_SNP [dm3] 3R_17941301_SNP [dm6]	G	C	3.245e^-4	0.737	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18083614	3R_18083614_SNP [dm3] 3R_22257892_SNP [dm6]	C	A	3.246e^-4	0.737	INTRON SKIP
X	2887071	X_2887071_SNP [dm3] X_2993038_SNP [dm6]	A	G	3.254e^-4	0.737	INTRON kirre
3L	8502014	3L_8502014_SNP [dm3] 3L_8508914_SNP [dm6]	C	T	3.259e^-4	0.737	INTRON ZC3H3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17654536	3R_17654536_SNP [dm3] 3R_21828814_SNP [dm6]	T	C	3.269e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3R	22073284	3R_22073284_SNP [dm3] 3R_26247562_SNP [dm6]	A	T	3.271e^-4	0.737	INTRON CR42745	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	23190890	3R_23190890_SNP [dm3] 3R_27365168_SNP [dm6]	G	C	3.274e^-4	0.737	INTRON CG42534
X	5604112	X_5604112_SNP [dm3] X_5710079_SNP [dm6]	C	T	3.274e^-4	0.737	NON_SYNONYMOUS_CODING CG33080	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19050635	3R_19050635_SNP [dm3] 3R_23224913_SNP [dm6]	T	C	3.275e^-4	0.737	INTRON cnc
3L	16934325	3L_16934325_SNP [dm3] 3L_16941225_SNP [dm6]	G	A	3.278e^-4	0.737	INTRON Cpr73D
2L	9926434	2L_9926434_SNP [dm3] 2L_9926434_SNP [dm6]	G	A	3.279e^-4	0.737	INTRON CG42366	TF binding site mE1_TFBS_cad
X	21948362	X_21948362_SNP [dm3] X_22546526_SNP [dm6]	C	G	3.282e^-4	0.737	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_kn
3R	24257843	3R_24257843_SNP [dm3] 3R_28432121_SNP [dm6]	C	G	3.292e^-4	0.737	INTRON beat-VI
3L	11921150	3L_11921150_SNP [dm3] 3L_11928050_SNP [dm6]	T	C	3.298e^-4	0.737	INTRON CG44837 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14379534	2L_14379534_SNP [dm3] 2L_14379534_SNP [dm6]	A	G	3.310e^-4	0.737	SYNONYMOUS_CODING ppk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14379543	2L_14379543_SNP [dm3] 2L_14379543_SNP [dm6]	G	A	3.310e^-4	0.737	SYNONYMOUS_CODING ppk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5718316	2R_5718316_SNP [dm3] 2R_9830811_SNP [dm6]	C	T	3.312e^-4	0.737	INTRON hebe
3L	7437029	3L_7437029_SNP [dm3] 3L_7443929_SNP [dm6]	A	G	3.320e^-4	0.737	INTRON CG42458
3L	15713770	3L_15713770_SNP [dm3] 3L_15720670_SNP [dm6]	T	A	3.321e^-4	0.737	DOWNSTREAM CG42570 & 1 other INTERGENIC
2R	16464310	2R_16464310_SNP [dm3] 2R_20576805_SNP [dm6]	C	G	3.321e^-4	0.737	INTRON qsm
2L	10450442	2L_10450442_DEL [dm3] 2L_10450442_DEL [dm6]	TG	T	3.322e^-4	0.737	DOWNSTREAM loh INTRON ppk10
3L	14988246	3L_14988246_SNP [dm3] 3L_14995146_SNP [dm6]	T	C	3.323e^-4	0.737	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16957927	2L_16957927_SNP [dm3] 2L_16957927_SNP [dm6]	C	T	3.324e^-4	0.737	INTERGENIC
2R	15021215	2R_15021215_SNP [dm3] 2R_19133710_SNP [dm6]	A	G	3.327e^-4	0.737	DOWNSTREAM CG15118 & 1 other INTERGENIC
3R	14712291	3R_14712291_SNP [dm3] 3R_18886569_SNP [dm6]	G	A	3.332e^-4	0.737	INTERGENIC
2L	1930974	2L_1930974_DEL [dm3] 2L_1930974_DEL [dm6]	GTTTTG	G	3.336e^-4	0.737	INTRON CG7337
2L	669309	2L_669309_INS [dm3] 2L_669309_INS [dm6]	A	AG	3.341e^-4	0.737	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	22562313	3L_22562313_SNP [dm3] 3L_22569213_SNP [dm6]	C	T	3.348e^-4	0.737	INTERGENIC
2L	2389934	2L_2389934_SNP [dm3] 2L_2389934_SNP [dm6]	T	A	3.353e^-4	0.737	SYNONYMOUS_CODING CG43750
3R	27064007	3R_27064007_SNP [dm3] 3R_31238285_SNP [dm6]	C	A	3.356e^-4	0.737	INTRON qless
X	5035662	X_5035662_SNP [dm3] X_5141629_SNP [dm6]	G	A	3.356e^-4	0.737	INTRON rg & 1 other
3L	16863506	3L_16863506_SNP [dm3] 3L_16870406_SNP [dm6]	C	A	3.358e^-4	0.737	INTRON Lmpt
2R	15250041	2R_15250041_SNP [dm3] 2R_19362536_SNP [dm6]	A	G	3.359e^-4	0.737	UTR_3_PRIME CG11961 DOWNSTREAM CG11961
X	2887174	X_2887174_SNP [dm3] X_2993141_SNP [dm6]	C	T	3.362e^-4	0.737	INTRON kirre
2L	7222468	2L_7222468_SNP [dm3] 2L_7222468_SNP [dm6]	G	A	3.363e^-4	0.737	SYNONYMOUS_CODING ico DOWNSTREAM Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	9131663	3L_9131663_SNP [dm3] 3L_9138563_SNP [dm6]	G	A	3.365e^-4	0.737	INTRON nwk	TF binding site BDTNP1_TFBS_dl
3L	18300758	3L_18300758_SNP [dm3] 3L_18307658_SNP [dm6]	G	A	3.385e^-4	0.741	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18893922	2R_18893922_SNP [dm3] 2R_23006399_SNP [dm6]	C	T	3.391e^-4	0.741	INTRON twi
2R	19559955	2R_19559955_SNP [dm3] 2R_23672432_SNP [dm6]	C	T	3.403e^-4	0.743	UPSTREAM Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18154258	3L_18154258_SNP [dm3] 3L_18161158_SNP [dm6]	C	T	3.414e^-4	0.745	INTRON CG13699	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15771667	3R_15771667_SNP [dm3] 3R_19945945_SNP [dm6]	A	G	3.422e^-4	0.745	INTRON Hs6st
2L	1405719	2L_1405719_SNP [dm3] 2L_1405719_SNP [dm6]	C	A	3.423e^-4	0.745	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12398609	3L_12398609_SNP [dm3] 3L_12405509_SNP [dm6]	G	T	3.431e^-4	0.745	UPSTREAM CG32103 INTRON CG32103
X	18813791	X_18813791_SNP [dm3] X_18919758_SNP [dm6]	A	T	3.442e^-4	0.745	INTERGENIC
2L	2918575	2L_2918575_SNP [dm3] 2L_2918575_SNP [dm6]	A	T	3.448e^-4	0.745	INTRON lilli
2L	9925917	2L_9925917_SNP [dm3] 2L_9925917_SNP [dm6]	G	C	3.458e^-4	0.745	INTRON CG42366
3L	784382	3L_784382_SNP [dm3] 3L_784382_SNP [dm6]	T	A	3.460e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17477805	3L_17477805_SNP [dm3] 3L_17484705_SNP [dm6]	C	T	3.464e^-4	0.745	INTRON CG6333
3L	22493916	3L_22493916_SNP [dm3] 3L_22500816_SNP [dm6]	G	A	3.469e^-4	0.745	UPSTREAM CG43312 INTERGENIC
3L	22516910	3L_22516910_SNP [dm3] 3L_22523810_SNP [dm6]	G	T	3.469e^-4	0.745	INTERGENIC
3R	25124838	3R_25124838_SNP [dm3] 3R_29299116_SNP [dm6]	G	A	3.475e^-4	0.745	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	1914514	2R_1914514_SNP [dm3] 2R_6027009_SNP [dm6]	T	C	3.482e^-4	0.745	SYNONYMOUS_CODING SCAP
3R	2708384	3R_2708384_SNP [dm3] 3R_6882662_SNP [dm6]	T	G	3.483e^-4	0.745	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	3505033	2L_3505033_SNP [dm3] 2L_3505033_SNP [dm6]	T	G	3.484e^-4	0.745	INTRON tim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4015719	2R_4015719_SNP [dm3] 2R_8128214_SNP [dm6]	C	T	3.488e^-4	0.745	SYNONYMOUS_CODING Socs44A UPSTREAM coil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20251252	3R_20251252_SNP [dm3] 3R_24425530_SNP [dm6]	T	C	3.492e^-4	0.745	INTRON nAChRalpha1
3R	2676364	3R_2676364_SNP [dm3] 3R_6850642_SNP [dm6]	T	A	3.496e^-4	0.745	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	16419031	3L_16419031_SNP [dm3] 3L_16425931_SNP [dm6]	A	C	3.497e^-4	0.745	INTRON CG33158 & 1 other
3R	9414473	3R_9414473_INS [dm3] 3R_13588751_INS [dm6]	T	TCCAGCACTT	3.500e^-4	0.745	DOWNSTREAM CG14370 INTERGENIC
2L	7447619	2L_7447619_SNP [dm3] 2L_7447619_SNP [dm6]	C	A	3.500e^-4	0.745	NON_SYNONYMOUS_CODING santa-maria
3R	9751390	3R_9751390_SNP [dm3] 3R_13925668_SNP [dm6]	T	C	3.501e^-4	0.745	INTERGENIC
3R	19383018	3R_19383018_SNP [dm3] 3R_23557296_SNP [dm6]	A	G	3.513e^-4	0.746	UPSTREAM beat-IV & 1 other INTERGENIC
3R	24579225	3R_24579225_SNP [dm3] 3R_28753503_SNP [dm6]	C	G	3.513e^-4	0.746	INTERGENIC
2L	1348550	2L_1348550_SNP [dm3] 2L_1348550_SNP [dm6]	T	C	3.539e^-4	0.747	INTERGENIC
2R	5718721	2R_5718721_SNP [dm3] 2R_9831216_SNP [dm6]	T	G	3.552e^-4	0.747	INTRON hebe
3R	2839936	3R_2839936_SNP [dm3] 3R_7014214_SNP [dm6]	G	A	3.555e^-4	0.747	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16237470	2R_16237470_SNP [dm3] 2R_20349965_SNP [dm6]	A	G	3.558e^-4	0.747	INTERGENIC
2L	12406217	2L_12406217_SNP [dm3] 2L_12406217_SNP [dm6]	T	A	3.560e^-4	0.747	DOWNSTREAM vir-1 INTRON vir-1
2R	9581399	2R_9581399_SNP [dm3] 2R_13693894_SNP [dm6]	C	T	3.561e^-4	0.747	UPSTREAM CG6220 INTRON fas	TF binding site mE1_TFBS_chinmo
3R	11310658	3R_11310658_SNP [dm3] 3R_15484936_SNP [dm6]	A	G	3.564e^-4	0.747	SYNONYMOUS_CODING Trissin DOWNSTREAM Rh6
3L	9059429	3L_9059429_SNP [dm3] 3L_9066329_SNP [dm6]	T	A	3.572e^-4	0.747	UPSTREAM Argk DOWNSTREAM CG4911 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	13767981	2R_13767981_SNP [dm3] 2R_17880476_SNP [dm6]	G	A	3.573e^-4	0.747	NON_SYNONYMOUS_CODING CG30110 UPSTREAM CG30325 INTRON Elk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11206747	3L_11206747_SNP [dm3] 3L_11213647_SNP [dm6]	A	C	3.574e^-4	0.747	NON_SYNONYMOUS_CODING CG7600 UPSTREAM CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15713790	3L_15713790_SNP [dm3] 3L_15720690_SNP [dm6]	G	A	3.574e^-4	0.747	DOWNSTREAM CG42570 & 1 other INTERGENIC
2L	2544533	2L_2544533_SNP [dm3] 2L_2544533_SNP [dm6]	G	C	3.575e^-4	0.747	INTERGENIC
3R	13528920	3R_13528920_SNP [dm3] 3R_17703198_SNP [dm6]	C	T	3.580e^-4	0.747	INTRON osa
3R	9893592	3R_9893592_DEL [dm3] 3R_14067870_DEL [dm6]	TGCTG	C	3.588e^-4	0.747	INTRON foxo
2R	16665706	2R_16665706_SNP [dm3] 2R_20778201_SNP [dm6]	C	T	3.588e^-4	0.747	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3R	25984898	3R_25984898_SNP [dm3] 3R_30159176_SNP [dm6]	C	T	3.596e^-4	0.747	INTRON CG11498
3L	3460454	3L_3460454_SNP [dm3] 3L_3460454_SNP [dm6]	C	A	3.598e^-4	0.747	UTR_5_PRIME eIF5B UPSTREAM armi	TF binding site BDTNP1_TFBS_dl
3R	23279986	3R_23279986_SNP [dm3] 3R_27454264_SNP [dm6]	T	C	3.604e^-4	0.747	INTERGENIC
2L	2770037	2L_2770037_SNP [dm3] 2L_2770037_SNP [dm6]	T	C	3.607e^-4	0.747	UTR_5_PRIME colt UPSTREAM CG2862 DOWNSTREAM CG15399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18145995	3L_18145995_SNP [dm3] 3L_18152895_SNP [dm6]	G	T	3.615e^-4	0.747	INTRON CG7330
2L	8243100	2L_8243100_SNP [dm3] 2L_8243100_SNP [dm6]	C	T	3.626e^-4	0.747	SYNONYMOUS_CODING CG14277 DOWNSTREAM CG43057 & 1 other
3R	1704414	3R_1704414_SNP [dm3] 3R_5878692_SNP [dm6]	G	A	3.626e^-4	0.747	SPLICE_SITE_REGION CG34113 INTRON CG34113
3R	24027876	3R_24027876_SNP [dm3] 3R_28202154_SNP [dm6]	T	C	3.627e^-4	0.747	INTRON CG34354
2L	7103393	2L_7103393_SNP [dm3] 2L_7103393_SNP [dm6]	C	A	3.632e^-4	0.747	INTRON Pvf3
2R	1899858	2R_1899858_SNP [dm3] 2R_6012353_SNP [dm6]	T	A	3.633e^-4	0.747	UTR_3_PRIME Src42A
3L	18597545	3L_18597545_SNP [dm3] 3L_18604445_SNP [dm6]	A	C	3.634e^-4	0.747	INTRON CG4174 & 2 others
2L	14789445	2L_14789445_SNP [dm3] 2L_14789445_SNP [dm6]	A	T	3.636e^-4	0.747	INTERGENIC
2R	5757232	2R_5757232_DEL [dm3] 2R_9869727_DEL [dm6]	TAAGGAGACTTGGTGATCAG...	T	3.638e^-4	0.747	DOWNSTREAM CR45138 INTRON cbx
2L	1358612	2L_1358612_SNP [dm3] 2L_1358612_SNP [dm6]	A	C	3.638e^-4	0.747	DOWNSTREAM CG31659 INTERGENIC
3R	20575064	3R_20575064_SNP [dm3] 3R_24749342_SNP [dm6]	C	T	3.639e^-4	0.747	UPSTREAM tld DOWNSTREAM tok INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	11742076	X_11742076_SNP [dm3] X_11848043_SNP [dm6]	T	G	3.639e^-4	0.747	INTERGENIC
2L	10122327	2L_10122327_SNP [dm3] 2L_10122327_SNP [dm6]	T	G	3.644e^-4	0.747	UTR_3_PRIME CG13135 INTRON CG44153 & 1 other
3L	18153051	3L_18153051_SNP [dm3] 3L_18159951_SNP [dm6]	C	T	3.660e^-4	0.747	NON_SYNONYMOUS_CODING CG13699
3R	5142763	3R_5142763_SNP [dm3] 3R_9317041_SNP [dm6]	T	A	3.663e^-4	0.747	INTRON CG8861
2L	669305	2L_669305_SNP [dm3] 2L_669305_SNP [dm6]	T	A	3.664e^-4	0.747	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	16303138	2L_16303138_SNP [dm3] 2L_16303138_SNP [dm6]	C	A	3.669e^-4	0.747	UPSTREAM c_2_M & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	15733226	2L_15733226_SNP [dm3] 2L_15733226_SNP [dm6]	G	T	3.669e^-4	0.747	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26848812	3R_26848812_SNP [dm3] 3R_31023090_SNP [dm6]	G	A	3.672e^-4	0.747	INTERGENIC
3L	9582761	3L_9582761_SNP [dm3] 3L_9589661_SNP [dm6]	C	T	3.676e^-4	0.747	INTRON CG42673
2L	14353118	2L_14353118_SNP [dm3] 2L_14353118_SNP [dm6]	C	T	3.678e^-4	0.747	NON_SYNONYMOUS_CODING l_2_34Fd DOWNSTREAM CG43052	TF binding site mE1_TFBS_cad
3R	12043007	3R_12043007_SNP [dm3] 3R_16217285_SNP [dm6]	A	T	3.681e^-4	0.747	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17410372	2R_17410372_SNP [dm3] 2R_21522867_SNP [dm6]	T	C	3.684e^-4	0.747	UTR_5_PRIME Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	8502965	3L_8502965_SNP [dm3] 3L_8509865_SNP [dm6]	C	T	3.703e^-4	0.749	UPSTREAM CG6745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17464885	2L_17464885_SNP [dm3] 2L_17464885_SNP [dm6]	C	G	3.703e^-4	0.749	INTRON BicD
3L	18150202	3L_18150202_SNP [dm3] 3L_18157102_SNP [dm6]	A	G	3.707e^-4	0.749	INTRON CG13699
3R	2594889	3R_2594889_INS [dm3] 3R_6769167_INS [dm6]	T	TTTT	3.709e^-4	0.749	INTRON CR42721	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25414136	3R_25414136_INS [dm3] 3R_29588414_INS [dm6]	G	AGACAA	3.716e^-4	0.75	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
2L	7328923	2L_7328923_SNP [dm3] 2L_7328923_SNP [dm6]	A	G	3.733e^-4	0.751	DOWNSTREAM CR45304 INTERGENIC
2L	6768818	2L_6768818_SNP [dm3] 2L_6768818_SNP [dm6]	T	C	3.735e^-4	0.751	INTRON CG11321	TF binding site mE1_TFBS_chinmo
3R	9751475	3R_9751475_SNP [dm3] 3R_13925753_SNP [dm6]	G	A	3.761e^-4	0.751	INTERGENIC
3R	2674838	3R_2674838_SNP [dm3] 3R_6849116_SNP [dm6]	T	A	3.764e^-4	0.751	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16863507	3L_16863507_SNP [dm3] 3L_16870407_SNP [dm6]	A	C	3.766e^-4	0.751	INTRON Lmpt
2L	670903	2L_670903_SNP [dm3] 2L_670903_SNP [dm6]	T	C	3.768e^-4	0.751	INTRON ds	TF binding site BDTNP1_TFBS_dl
2R	20194371	2R_20194371_SNP [dm3] 2R_24306848_SNP [dm6]	G	A	3.770e^-4	0.751	INTRON betaTub60D	regulatory region REDfly_CRMs
2L	3505087	2L_3505087_SNP [dm3] 2L_3505087_SNP [dm6]	A	C	3.772e^-4	0.751	INTRON tim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19182111	3R_19182111_SNP [dm3] 3R_23356389_SNP [dm6]	C	T	3.774e^-4	0.751	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22204252	3L_22204252_SNP [dm3] 3L_22211152_SNP [dm6]	A	T	3.776e^-4	0.751	INTRON olf413	TF binding site mE1_TFBS_HSA
3L	10239287	3L_10239287_SNP [dm3] 3L_10246187_SNP [dm6]	G	T	3.783e^-4	0.751	UPSTREAM CR44539 INTERGENIC	TF binding site BDTNP1_TFBS_z
X	7919209	X_7919209_SNP [dm3] X_8025176_SNP [dm6]	T	C	3.786e^-4	0.751	INTRON Tbh
2R	12386296	2R_12386296_SNP [dm3] 2R_16498791_SNP [dm6]	C	T	3.786e^-4	0.751	SYNONYMOUS_CODING CG7813	TF binding site BDTNP1_TFBS_dl
3L	1035774	3L_1035774_SNP [dm3] 3L_1035774_SNP [dm6]	A	G	3.791e^-4	0.751	SYNONYMOUS_CODING CG9205 UPSTREAM trio DOWNSTREAM bab1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	15701772	3L_15701772_SNP [dm3] 3L_15708672_SNP [dm6]	A	G	3.796e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	11144926	3L_11144926_SNP [dm3] 3L_11151826_SNP [dm6]	T	G	3.804e^-4	0.751	INTRON CG32082
3L	16462035	3L_16462035_SNP [dm3] 3L_16468935_SNP [dm6]	T	C	3.809e^-4	0.751	INTRON CG33158	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18444239	3R_18444239_SNP [dm3] 3R_22618517_SNP [dm6]	T	A	3.814e^-4	0.751	UTR_5_PRIME mRpL45 DOWNSTREAM CG31161	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9596799	2L_9596799_SNP [dm3] 2L_9596799_SNP [dm6]	G	A	3.827e^-4	0.751	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	1884274	2R_1884274_SNP [dm3] 2R_5996769_SNP [dm6]	T	C	3.830e^-4	0.751	INTRON Src42A
2R	5645985	2R_5645985_DEL [dm3] 2R_9758480_DEL [dm6]	CTC	C	3.833e^-4	0.751	UPSTREAM CG1690 INTRON trpl
2L	3378881	2L_3378881_SNP [dm3] 2L_3378881_SNP [dm6]	G	A	3.835e^-4	0.751	DOWNSTREAM Ptpa INTERGENIC
2L	663591	2L_663591_SNP [dm3] 2L_663591_SNP [dm6]	A	G	3.839e^-4	0.751	INTRON ds
3R	13278103	3R_13278103_SNP [dm3] 3R_17452381_SNP [dm6]	G	T	3.840e^-4	0.751	INTERGENIC
3R	25080671	3R_25080671_SNP [dm3] 3R_29254949_SNP [dm6]	A	G	3.842e^-4	0.751	UTR_5_PRIME stg	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	4080380	2L_4080380_SNP [dm3] 2L_4080380_SNP [dm6]	C	T	3.846e^-4	0.751	INTRON ed	TF binding site BDTNP1_TFBS_dl
3L	18916749	3L_18916749_SNP [dm3] 3L_18923649_SNP [dm6]	T	C	3.846e^-4	0.751	UTR_3_PRIME CG32204	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3378876	2L_3378876_SNP [dm3] 2L_3378876_SNP [dm6]	A	T	3.847e^-4	0.751	DOWNSTREAM Ptpa INTERGENIC
2L	2159284	2L_2159284_SNP [dm3] 2L_2159284_SNP [dm6]	C	T	3.853e^-4	0.751	INTRON aop	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6354425	2R_6354425_SNP [dm3] 2R_10466920_SNP [dm6]	G	T	3.857e^-4	0.751	SYNONYMOUS_CODING Caf1-105	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2707527	3L_2707527_SNP [dm3] 3L_2707527_SNP [dm6]	T	C	3.858e^-4	0.751	INTRON Fife
2R	14683159	2R_14683159_SNP [dm3] 2R_18795654_SNP [dm6]	A	G	3.860e^-4	0.751	SYNONYMOUS_CODING MFS15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	24757149	3R_24757149_SNP [dm3] 3R_28931427_SNP [dm6]	G	A	3.864e^-4	0.751	INTRON CG14521
3R	23225070	3R_23225070_SNP [dm3] 3R_27399348_SNP [dm6]	C	A	3.865e^-4	0.751	INTRON side	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18157387	X_18157387_INS [dm3] X_18263354_INS [dm6]	A	ATGAAGCGA	3.867e^-4	0.751	INTERGENIC
3R	16751983	3R_16751983_SNP [dm3] 3R_20926261_SNP [dm6]	C	A	3.874e^-4	0.751	INTRON CG31191 & 1 other
2L	2770034	2L_2770034_SNP [dm3] 2L_2770034_SNP [dm6]	A	C	3.876e^-4	0.751	UTR_5_PRIME colt UPSTREAM CG2862 DOWNSTREAM CG15399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	19191477	3R_19191477_SNP [dm3] 3R_23365755_SNP [dm6]	C	A	3.880e^-4	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2674573	2L_2674573_SNP [dm3] 2L_2674573_SNP [dm6]	T	A	3.888e^-4	0.751	INTERGENIC
2L	2674576	2L_2674576_SNP [dm3] 2L_2674576_SNP [dm6]	T	C	3.888e^-4	0.751	INTERGENIC
2R	13648592	2R_13648592_SNP [dm3] 2R_17761087_SNP [dm6]	C	T	3.890e^-4	0.751	UTR_5_PRIME CG5009 DOWNSTREAM HLH54F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4757277	2L_4757277_SNP [dm3] 2L_4757277_SNP [dm6]	A	T	3.897e^-4	0.752	INTRON CG15630
3L	2904221	3L_2904221_SNP [dm3] 3L_2904221_SNP [dm6]	G	A	3.900e^-4	0.752	INTRON Shab
X	5681663	X_5681663_SNP [dm3] X_5787630_SNP [dm6]	C	T	3.904e^-4	0.752	INTRON CG42699
3R	23512415	3R_23512415_INS [dm3] 3R_27686693_INS [dm6]	A	AAA	3.909e^-4	0.752	INTRON CG12880 & 1 other	TF binding site mE1_TFBS_cad
3L	5953092	3L_5953092_SNP [dm3] 3L_5959992_SNP [dm6]	T	C	3.918e^-4	0.753	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11525993	3L_11525993_SNP [dm3] 3L_11532893_SNP [dm6]	G	A	3.921e^-4	0.753	INTRON Mob2
3L	16863336	3L_16863336_SNP [dm3] 3L_16870236_SNP [dm6]	G	C	3.924e^-4	0.753	INTRON Lmpt
3R	14938909	3R_14938909_SNP [dm3] 3R_19113187_SNP [dm6]	C	A	3.931e^-4	0.753	INTRON CG6040
2R	1885115	2R_1885115_SNP [dm3] 2R_5997610_SNP [dm6]	A	G	3.938e^-4	0.753	INTRON Src42A
3R	2665701	3R_2665701_SNP [dm3] 3R_6839979_SNP [dm6]	G	A	3.947e^-4	0.753	INTRON Scr	regulatory region REDfly_CRMs
3L	3178728	3L_3178728_SNP [dm3] 3L_3178728_SNP [dm6]	G	A	3.954e^-4	0.753	UPSTREAM Girdin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	21778059	3L_21778059_SNP [dm3] 3L_21784959_SNP [dm6]	A	T	3.957e^-4	0.753	INTERGENIC
3L	12035163	3L_12035163_SNP [dm3] 3L_12042063_SNP [dm6]	A	G	3.958e^-4	0.753	UPSTREAM CG6793 INTRON rols
3L	18361153	3L_18361153_SNP [dm3] 3L_18368053_SNP [dm6]	C	A	3.959e^-4	0.753	INTERGENIC
2L	9397237	2L_9397237_SNP [dm3] 2L_9397237_SNP [dm6]	A	G	3.964e^-4	0.753	SYNONYMOUS_CODING CG4438 INTRON Shawl
2R	8584264	2R_8584264_SNP [dm3] 2R_12696759_SNP [dm6]	A	C	3.965e^-4	0.753	INTERGENIC
2R	11780907	2R_11780907_SNP [dm3] 2R_15893402_SNP [dm6]	C	T	3.973e^-4	0.754	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	7808515	3L_7808515_SNP [dm3] 3L_7815415_SNP [dm6]	C	T	3.974e^-4	0.754	UTR_3_PRIME Pdp1
3R	8402950	3R_8402950_INS [dm3] 3R_12577228_INS [dm6]	T	TAGT	3.983e^-4	0.754	INTRON Octbeta2R
3L	22139591	3L_22139591_SNP [dm3] 3L_22146491_SNP [dm6]	A	G	3.988e^-4	0.754	INTRON olf413
X	4347050	X_4347050_INS [dm3] X_4453017_INS [dm6]	T	TATTT	3.995e^-4	0.754	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14487543	2L_14487543_SNP [dm3] 2L_14487543_SNP [dm6]	G	T	3.999e^-4	0.754	DOWNSTREAM CR44731 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	19372708	2L_19372708_SNP [dm3] 2L_19372708_SNP [dm6]	C	A	4.000e^-4	0.754	UTR_3_PRIME CG17349
X	13390640	X_13390640_SNP [dm3] X_13496607_SNP [dm6]	C	T	4.004e^-4	0.754	INTRON Neto
3L	18145983	3L_18145983_SNP [dm3] 3L_18152883_SNP [dm6]	T	C	4.007e^-4	0.754	INTRON CG7330
X	12938906	X_12938906_SNP [dm3] X_13044873_SNP [dm6]	T	A	4.009e^-4	0.754	INTRON rad
3R	2699997	3R_2699997_SNP [dm3] 3R_6874275_SNP [dm6]	G	C	4.011e^-4	0.754	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	20785469	3L_20785469_SNP [dm3] 3L_20792369_SNP [dm6]	G	T	4.015e^-4	0.754	UTR_5_PRIME Six4 UPSTREAM Six4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11270834	X_11270834_SNP [dm3] X_11376801_SNP [dm6]	A	T	4.031e^-4	0.755	INTRON dlg1

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.962e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05119

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2079 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	10877585	2R_10877585_SNP [dm3] 2R_14990080_SNP [dm6]	T	G	2.047e^-6	0.852	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
3R	19181150	3R_19181150_SNP [dm3] 3R_23355428_SNP [dm6]	G	C	2.261e^-6	0.852	SYNONYMOUS_CODING ATPsyn-Cf6 UPSTREAM Sec13 DOWNSTREAM DNApol-epsilon	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	9310579	3L_9310579_SNP [dm3] 3L_9317479_SNP [dm6]	G	C	2.406e^-6	0.852	INTERGENIC
3R	21519436	3R_21519436_SNP [dm3] 3R_25693714_SNP [dm6]	C	T	3.568e^-6	0.852	INTERGENIC
3R	18896509	3R_18896509_SNP [dm3] 3R_23070787_SNP [dm6]	T	C	4.596e^-6	0.852	UTR_3_PRIME CG13830
3R	2597335	3R_2597335_SNP [dm3] 3R_6771613_SNP [dm6]	C	T	4.643e^-6	0.852	INTRON CR42721
3R	21428666	3R_21428666_SNP [dm3] 3R_25602944_SNP [dm6]	T	C	4.663e^-6	0.852	UTR_3_PRIME msi DOWNSTREAM msi INTRON ymp
3R	19182165	3R_19182165_SNP [dm3] 3R_23356443_SNP [dm6]	A	C	5.632e^-6	0.852	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	19414846	X_19414846_SNP [dm3] X_19520813_SNP [dm6]	G	T	5.704e^-6	0.852	SYNONYMOUS_CODING l_1_G0156	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	25269712	3R_25269712_SNP [dm3] 3R_29443990_SNP [dm6]	T	A	5.903e^-6	0.852	INTRON Ptp99A
2R	10877612	2R_10877612_SNP [dm3] 2R_14990107_SNP [dm6]	T	C	6.532e^-6	0.852	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
3R	19182123	3R_19182123_SNP [dm3] 3R_23356401_SNP [dm6]	C	T	6.851e^-6	0.852	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3222190	3R_3222190_SNP [dm3] 3R_7396468_SNP [dm6]	A	C	7.332e^-6	0.852	INTERGENIC
2R	10877504	2R_10877504_SNP [dm3] 2R_14989999_SNP [dm6]	C	T	7.719e^-6	0.852	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
3R	23591589	3R_23591589_SNP [dm3] 3R_27765867_SNP [dm6]	A	G	8.569e^-6	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16891311	X_16891311_SNP [dm3] X_16997278_SNP [dm6]	C	T	9.106e^-6	0.852	INTRON CG45002
3L	12070042	3L_12070042_SNP [dm3] 3L_12076942_SNP [dm6]	T	G	1.006e^-5	0.852	INTRON Sema-5c	TF binding site BDTNP1_TFBS_twi
2R	10877678	2R_10877678_SNP [dm3] 2R_14990173_SNP [dm6]	C	T	1.019e^-5	0.852	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
3R	19182125	3R_19182125_SNP [dm3] 3R_23356403_SNP [dm6]	C	G	1.031e^-5	0.852	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16891302	X_16891302_SNP [dm3] X_16997269_SNP [dm6]	A	G	1.056e^-5	0.852	INTRON CG45002
2L	6348429	2L_6348429_SNP [dm3] 2L_6348429_SNP [dm6]	C	T	1.089e^-5	0.852	UPSTREAM CG9497 DOWNSTREAM CG9498 INTERGENIC
2R	10877669	2R_10877669_SNP [dm3] 2R_14990164_SNP [dm6]	C	T	1.106e^-5	0.852	SYNONYMOUS_CODING pcs INTRON CG7639	TF binding site mE1_TFBS_cad
3R	2594080	3R_2594080_SNP [dm3] 3R_6768358_SNP [dm6]	C	T	1.163e^-5	0.852	INTRON CR42721	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
X	13819213	X_13819213_SNP [dm3] X_13925180_SNP [dm6]	C	T	1.199e^-5	0.852	INTRON mamo
3R	2605557	3R_2605557_SNP [dm3] 3R_6779835_SNP [dm6]	G	T	1.223e^-5	0.852	UPSTREAM CR43435 DOWNSTREAM CR42721 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1
3R	16938197	3R_16938197_SNP [dm3] 3R_21112475_SNP [dm6]	C	A	1.250e^-5	0.852	INTRON Rab11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3421419	2L_3421419_SNP [dm3] 2L_3421419_SNP [dm6]	A	C	1.287e^-5	0.852	INTRON pgant2
2R	5741657	2R_5741657_SNP [dm3] 2R_9854152_SNP [dm6]	A	T	1.417e^-5	0.852	INTRON CG1516
2R	12022333	2R_12022333_SNP [dm3] 2R_16134828_SNP [dm6]	A	G	1.491e^-5	0.852	INTRON spin
3R	15764528	3R_15764528_SNP [dm3] 3R_19938806_SNP [dm6]	T	C	1.599e^-5	0.852	INTRON Hs6st
3R	16995597	3R_16995597_SNP [dm3] 3R_21169875_SNP [dm6]	C	A	1.761e^-5	0.852	INTRON SNF4Agamma
2R	8982725	2R_8982725_SNP [dm3] 2R_13095220_SNP [dm6]	G	A	1.803e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12070016	3L_12070016_SNP [dm3] 3L_12076916_SNP [dm6]	G	C	1.808e^-5	0.852	INTRON Sema-5c	TF binding site BDTNP1_TFBS_twi
X	19262479	X_19262479_INS [dm3] X_19368446_INS [dm6]	G	GATACAG	1.811e^-5	0.852	INTRON kek5
2R	17192490	2R_17192490_SNP [dm3] 2R_21304985_SNP [dm6]	A	G	2.064e^-5	0.852	SYNONYMOUS_CODING CG42672	TF binding site mE1_TFBS_cad
3R	19254769	3R_19254769_SNP [dm3] 3R_23429047_SNP [dm6]	T	C	2.093e^-5	0.852	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
3R	3222193	3R_3222193_SNP [dm3] 3R_7396471_SNP [dm6]	A	T	2.099e^-5	0.852	INTERGENIC
2L	1941988	2L_1941988_SNP [dm3] 2L_1941988_SNP [dm6]	G	A	2.100e^-5	0.852	SYNONYMOUS_CODING CG7337
X	3776151	X_3776151_SNP [dm3] X_3882118_SNP [dm6]	C	T	2.176e^-5	0.852	SYNONYMOUS_CODING VhaAC39-1	TF binding site mE1_TFBS_cad
2L	2374388	2L_2374388_SNP [dm3] 2L_2374388_SNP [dm6]	T	C	2.184e^-5	0.852	UPSTREAM CG15390 & 1 other DOWNSTREAM CR44982 INTRON CG3609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
X	9211325	X_9211325_SNP [dm3] X_9317292_SNP [dm6]	C	T	2.216e^-5	0.852	DOWNSTREAM c12.1 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	8922480	X_8922480_SNP [dm3] X_9028447_SNP [dm6]	C	T	2.230e^-5	0.852	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
3R	15764831	3R_15764831_SNP [dm3] 3R_19939109_SNP [dm6]	G	A	2.255e^-5	0.852	INTRON Hs6st	insulator Insulator_Class_II.mE01
X	6493775	X_6493775_SNP [dm3] X_6599742_SNP [dm6]	T	A	2.448e^-5	0.852	UPSTREAM pigs DOWNSTREAM APC7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	19181879	3R_19181879_SNP [dm3] 3R_23356157_SNP [dm6]	C	T	2.681e^-5	0.852	UPSTREAM Sec13 & 1 other DOWNSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	19201490	3R_19201490_SNP [dm3] 3R_23375768_SNP [dm6]	G	C	2.700e^-5	0.852	DOWNSTREAM CG4393 INTERGENIC
3L	22440652	3L_22440652_SNP [dm3] 3L_22447552_SNP [dm6]	A	G	2.818e^-5	0.852	INTERGENIC
2R	17190062	2R_17190062_SNP [dm3] 2R_21302557_SNP [dm6]	A	G	2.870e^-5	0.852	INTRON CG42672
3L	12966324	3L_12966324_SNP [dm3] 3L_12973224_SNP [dm6]	C	T	2.874e^-5	0.852	SYNONYMOUS_CODING CG10749 UPSTREAM CG10748
3R	19060310	3R_19060310_SNP [dm3] 3R_23234588_SNP [dm6]	C	A	3.053e^-5	0.852	INTRON CG4467
2L	6768637	2L_6768637_SNP [dm3] 2L_6768637_SNP [dm6]	C	A	3.096e^-5	0.852	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
3R	15344763	3R_15344763_SNP [dm3] 3R_19519041_SNP [dm6]	A	G	3.100e^-5	0.852	INTRON Dys
2L	1677424	2L_1677424_SNP [dm3] 2L_1677424_SNP [dm6]	G	A	3.141e^-5	0.852	INTRON chinmo
2L	9665704	2L_9665704_SNP [dm3] 2L_9665704_SNP [dm6]	G	A	3.155e^-5	0.852	INTERGENIC
2L	9511970	2L_9511970_DEL [dm3] 2L_9511970_DEL [dm6]	AA	A	3.174e^-5	0.852	INTRON CG33298	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	8715276	X_8715276_SNP [dm3] X_8821243_SNP [dm6]	T	C	3.198e^-5	0.852	INTERGENIC
3L	22473434	3L_22473434_SNP [dm3] 3L_22480334_SNP [dm6]	C	A	3.204e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1930899	2L_1930899_SNP [dm3] 2L_1930899_SNP [dm6]	T	A	3.263e^-5	0.852	INTRON CG7337
2R	13834381	2R_13834381_SNP [dm3] 2R_17946876_SNP [dm6]	T	C	3.268e^-5	0.852	INTERGENIC
3L	7167350	3L_7167350_SNP [dm3] 3L_7174250_SNP [dm6]	C	T	3.286e^-5	0.852	UTR_3_PRIME Dscam2 INTRON Dscam2
3R	16939217	3R_16939217_SNP [dm3] 3R_21113495_SNP [dm6]	C	G	3.301e^-5	0.852	INTRON Rab11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16891379	X_16891379_SNP [dm3] X_16997346_SNP [dm6]	A	T	3.445e^-5	0.852	INTRON CG45002
3R	18319464	3R_18319464_SNP [dm3] 3R_22493742_SNP [dm6]	T	C	3.472e^-5	0.852	UTR_3_PRIME CG7046
3R	19183222	3R_19183222_SNP [dm3] 3R_23357500_SNP [dm6]	G	A	3.538e^-5	0.852	SYNONYMOUS_CODING Sec13	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	9309537	3L_9309537_SNP [dm3] 3L_9316437_SNP [dm6]	C	G	3.619e^-5	0.852	INTERGENIC
3R	20323461	3R_20323461_SNP [dm3] 3R_24497739_SNP [dm6]	A	G	3.653e^-5	0.852	INTERGENIC
3L	7806804	3L_7806804_SNP [dm3] 3L_7813704_SNP [dm6]	G	A	3.654e^-5	0.852	UTR_3_PRIME Pdp1 DOWNSTREAM Pdp1
2L	1453609	2L_1453609_SNP [dm3] 2L_1453609_SNP [dm6]	T	A	3.656e^-5	0.852	INTERGENIC
3R	15764917	3R_15764917_SNP [dm3] 3R_19939195_SNP [dm6]	T	C	3.694e^-5	0.852	INTRON Hs6st
3L	22253300	3L_22253300_SNP [dm3] 3L_22260200_SNP [dm6]	C	A	3.745e^-5	0.852	NON_SYNONYMOUS_CODING Rich
2L	2374295	2L_2374295_SNP [dm3] 2L_2374295_SNP [dm6]	C	A	3.815e^-5	0.852	UPSTREAM CG15390 & 1 other DOWNSTREAM CR44982 INTRON CG3609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	10937064	3L_10937064_DEL [dm3] 3L_10943964_DEL [dm6]	GC	G	3.933e^-5	0.852	UPSTREAM CG34050 INTERGENIC
X	10210507	X_10210507_SNP [dm3] X_10316474_SNP [dm6]	T	G	3.959e^-5	0.852	INTRON alpha-Man-I
3R	25940717	3R_25940717_SNP [dm3] 3R_30114995_SNP [dm6]	C	G	4.184e^-5	0.852	INTRON sima
X	16891357	X_16891357_SNP [dm3] X_16997324_SNP [dm6]	C	T	4.199e^-5	0.852	INTRON CG45002
X	16891338	X_16891338_SNP [dm3] X_16997305_SNP [dm6]	T	A	4.245e^-5	0.852	INTRON CG45002
3L	3270505	3L_3270505_SNP [dm3] 3L_3270505_SNP [dm6]	G	A	4.379e^-5	0.852	UPSTREAM CG14960 INTERGENIC
X	10265045	X_10265045_SNP [dm3] X_10371012_SNP [dm6]	A	G	4.413e^-5	0.852	DOWNSTREAM CG32686 INTRON CG17841
X	16891299	X_16891299_SNP [dm3] X_16997266_SNP [dm6]	G	T	4.459e^-5	0.852	INTRON CG45002
X	9211326	X_9211326_SNP [dm3] X_9317293_SNP [dm6]	C	T	4.478e^-5	0.852	DOWNSTREAM c12.1 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	22588248	3L_22588248_SNP [dm3] 3L_22595148_SNP [dm6]	T	C	4.537e^-5	0.852	INTRON CG14459
3R	2604632	3R_2604632_INS [dm3] 3R_6778910_INS [dm6]	A	AGGT	4.551e^-5	0.852	INTRON CR42721 EXON CR43435
3R	2604636	3R_2604636_INS [dm3] 3R_6778914_INS [dm6]	T	AA	4.551e^-5	0.852	INTRON CR42721 EXON CR43435
3R	19078619	3R_19078619_SNP [dm3] 3R_23252897_SNP [dm6]	A	G	4.593e^-5	0.852	SYNONYMOUS_CODING EloA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	21194128	X_21194128_SNP [dm3] X_21323101_SNP [dm6]	C	T	4.611e^-5	0.852	UPSTREAM CG1486 INTRON Dd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h
2R	4494466	2R_4494466_SNP [dm3] 2R_8606961_SNP [dm6]	T	A	4.789e^-5	0.852	INTRON rgr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	5620200	X_5620200_SNP [dm3] X_5726167_SNP [dm6]	G	A	4.804e^-5	0.852	INTRON CG32758
3L	2375522	3L_2375522_SNP [dm3] 3L_2375522_SNP [dm6]	G	C	4.859e^-5	0.852	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877	TF binding site mE1_TFBS_sens
2R	13834518	2R_13834518_SNP [dm3] 2R_17947013_SNP [dm6]	C	T	4.862e^-5	0.852	INTERGENIC
2L	20645973	2L_20645973_SNP [dm3] 2L_20645973_SNP [dm6]	C	T	4.995e^-5	0.852	UPSTREAM phr6-4 INTRON CG2608	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8547274	3L_8547274_SNP [dm3] 3L_8554174_SNP [dm6]	A	C	4.995e^-5	0.852	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14818898	X_14818898_SNP [dm3] X_14924865_SNP [dm6]	A	G	5.022e^-5	0.852	INTRON Flo2
3L	22186322	3L_22186322_SNP [dm3] 3L_22193222_SNP [dm6]	C	T	5.044e^-5	0.852	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14009463	3L_14009463_SNP [dm3] 3L_14016363_SNP [dm6]	A	G	5.052e^-5	0.852	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	20313560	3L_20313560_SNP [dm3] 3L_20320460_SNP [dm6]	A	C	5.119e^-5	0.852	UPSTREAM Spn77Bb DOWNSTREAM Spn77Ba INTERGENIC
3R	2605862	3R_2605862_SNP [dm3] 3R_6780140_SNP [dm6]	T	G	5.151e^-5	0.852	DOWNSTREAM CR42721 INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6650981	3L_6650981_SNP [dm3] 3L_6657881_SNP [dm6]	C	A	5.173e^-5	0.852	INTERGENIC
X	8826966	X_8826966_SNP [dm3] X_8932933_SNP [dm6]	G	T	5.264e^-5	0.852	INTRON rdgA
3R	19182118	3R_19182118_SNP [dm3] 3R_23356396_SNP [dm6]	C	G	5.316e^-5	0.852	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7041969	2R_7041969_SNP [dm3] 2R_11154464_SNP [dm6]	G	A	5.330e^-5	0.852	UPSTREAM CG13230 INTRON CG13229
2R	5719349	2R_5719349_SNP [dm3] 2R_9831844_SNP [dm6]	T	C	5.470e^-5	0.852	UPSTREAM hebe INTRON hebe
3R	23851614	3R_23851614_SNP [dm3] 3R_28025892_SNP [dm6]	T	A	5.475e^-5	0.852	UPSTREAM CG34362 INTERGENIC
3R	25601413	3R_25601413_SNP [dm3] 3R_29775691_SNP [dm6]	C	T	5.492e^-5	0.852	INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	10469641	3L_10469641_SNP [dm3] 3L_10476541_SNP [dm6]	A	G	5.532e^-5	0.852	INTERGENIC
3R	2601807	3R_2601807_SNP [dm3] 3R_6776085_SNP [dm6]	A	G	5.549e^-5	0.852	UPSTREAM mir-993 INTRON CR42721 EXON CR42721	TF binding site mE1_TFBS_cad
2L	2124857	2L_2124857_SNP [dm3] 2L_2124857_SNP [dm6]	C	A	5.603e^-5	0.852	INTERGENIC
3L	22388447	3L_22388447_SNP [dm3] 3L_22395347_SNP [dm6]	A	G	5.631e^-5	0.852	INTRON Ten-m	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	19181860	3R_19181860_SNP [dm3] 3R_23356138_SNP [dm6]	T	G	5.683e^-5	0.852	UPSTREAM Sec13 & 1 other DOWNSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	8715298	X_8715298_SNP [dm3] X_8821265_SNP [dm6]	T	C	5.708e^-5	0.852	INTERGENIC
3L	20283908	3L_20283908_SNP [dm3] 3L_20290808_SNP [dm6]	G	T	5.759e^-5	0.852	INTRON gogo EXON CR43890
X	8826917	X_8826917_SNP [dm3] X_8932884_SNP [dm6]	C	T	5.838e^-5	0.852	INTRON rdgA
3L	3780607	3L_3780607_SNP [dm3] 3L_3780607_SNP [dm6]	C	T	5.865e^-5	0.852	SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site mE1_TFBS_chinmo
2L	13952604	2L_13952604_SNP [dm3] 2L_13952604_SNP [dm6]	C	G	5.912e^-5	0.852	INTRON Ance-3
3R	19181865	3R_19181865_SNP [dm3] 3R_23356143_SNP [dm6]	T	A	6.024e^-5	0.852	UPSTREAM Sec13 & 1 other DOWNSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8553204	3L_8553204_SNP [dm3] 3L_8560104_SNP [dm6]	G	A	6.038e^-5	0.852	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13834364	2R_13834364_SNP [dm3] 2R_17946859_SNP [dm6]	T	A	6.048e^-5	0.852	INTERGENIC
X	6493881	X_6493881_SNP [dm3] X_6599848_SNP [dm6]	C	T	6.056e^-5	0.852	UPSTREAM pigs DOWNSTREAM APC7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19567764	3R_19567764_SNP [dm3] 3R_23742042_SNP [dm6]	T	C	6.119e^-5	0.852	INTRON Hmgcr
3R	25408750	3R_25408750_SNP [dm3] 3R_29583028_SNP [dm6]	G	A	6.125e^-5	0.852	INTERGENIC
3R	25408820	3R_25408820_SNP [dm3] 3R_29583098_SNP [dm6]	G	A	6.170e^-5	0.852	INTERGENIC
3R	8405636	3R_8405636_SNP [dm3] 3R_12579914_SNP [dm6]	T	A	6.170e^-5	0.852	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18896522	3R_18896522_SNP [dm3] 3R_23070800_SNP [dm6]	A	G	6.216e^-5	0.852	UTR_3_PRIME CG13830
X	14808560	X_14808560_SNP [dm3] X_14914527_SNP [dm6]	A	G	6.324e^-5	0.852	UPSTREAM CG12398 INTRON Flo2
2R	4476915	2R_4476915_SNP [dm3] 2R_8589410_SNP [dm6]	T	C	6.351e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20282707	3L_20282707_SNP [dm3] 3L_20289607_SNP [dm6]	C	T	6.385e^-5	0.852	INTRON gogo
3L	8547167	3L_8547167_SNP [dm3] 3L_8554067_SNP [dm6]	C	T	6.434e^-5	0.852	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9011964	X_9011964_SNP [dm3] X_9117931_SNP [dm6]	A	G	6.464e^-5	0.852	DOWNSTREAM AP-1gamma INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	2116798	2R_2116798_SNP [dm3] 2R_6229293_SNP [dm6]	C	A	6.515e^-5	0.852	UPSTREAM bin3 INTRON bin3
3L	3725994	3L_3725994_SNP [dm3] 3L_3725994_SNP [dm6]	A	G	6.534e^-5	0.852	INTRON CG32264
X	9211273	X_9211273_INS [dm3] X_9317240_INS [dm6]	T	TA	6.594e^-5	0.852	DOWNSTREAM c12.1 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	16939738	3R_16939738_SNP [dm3] 3R_21114016_SNP [dm6]	C	T	6.688e^-5	0.852	SYNONYMOUS_CODING Rab11
X	3224717	X_3224717_SNP [dm3] X_3330684_SNP [dm6]	C	G	6.793e^-5	0.852	INTRON CR44886 & 1 other
2R	16930953	2R_16930953_SNP [dm3] 2R_21043448_SNP [dm6]	G	C	6.812e^-5	0.852	INTERGENIC
2L	12246733	2L_12246733_SNP [dm3] 2L_12246733_SNP [dm6]	G	C	6.828e^-5	0.852	INTRON aret
3L	22269526	3L_22269526_SNP [dm3] 3L_22276426_SNP [dm6]	T	C	6.841e^-5	0.852	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad
2R	20398038	2R_20398038_SNP [dm3] 2R_24510515_SNP [dm6]	C	G	6.878e^-5	0.852	SYNONYMOUS_CODING Letm1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6112341	3L_6112341_SNP [dm3] 3L_6119241_SNP [dm6]	T	G	7.018e^-5	0.852	INTRON Ets65A
3R	3081577	3R_3081577_SNP [dm3] 3R_7255855_SNP [dm6]	G	A	7.038e^-5	0.852	INTRON Gld
X	8715358	X_8715358_SNP [dm3] X_8821325_SNP [dm6]	T	C	7.113e^-5	0.852	INTERGENIC
2L	9945770	2L_9945770_SNP [dm3] 2L_9945770_SNP [dm6]	C	A	7.124e^-5	0.852	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2600557	3R_2600557_SNP [dm3] 3R_6774835_SNP [dm6]	G	C	7.161e^-5	0.852	INTRON CR42721	TF binding site mE1_TFBS_cad
3R	21519432	3R_21519432_SNP [dm3] 3R_25693710_SNP [dm6]	T	C	7.344e^-5	0.852	INTERGENIC
2R	13358600	2R_13358600_SNP [dm3] 2R_17471095_SNP [dm6]	G	A	7.400e^-5	0.852	INTRON qkr54B
2L	12246765	2L_12246765_SNP [dm3] 2L_12246765_SNP [dm6]	T	A	7.423e^-5	0.852	INTRON aret
2R	2449065	2R_2449065_SNP [dm3] 2R_6561560_SNP [dm6]	G	C	7.454e^-5	0.852	INTRON jing	TF binding site mE1_TFBS_chinmo
X	8922476	X_8922476_SNP [dm3] X_9028443_SNP [dm6]	T	C	7.463e^-5	0.852	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
2R	7526647	2R_7526647_SNP [dm3] 2R_11639142_SNP [dm6]	G	T	7.558e^-5	0.852	INTRON CG9005	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17644569	3R_17644569_SNP [dm3] 3R_21818847_SNP [dm6]	T	C	7.574e^-5	0.852	INTRON CASK
3R	2657165	3R_2657165_SNP [dm3] 3R_6831443_SNP [dm6]	A	G	7.598e^-5	0.852	INTRON Scr	regulatory region REDfly_CRMs
3L	22193966	3L_22193966_SNP [dm3] 3L_22200866_SNP [dm6]	C	A	7.669e^-5	0.852	INTRON olf413
3R	2630767	3R_2630767_SNP [dm3] 3R_6805045_SNP [dm6]	C	A	7.691e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	4476885	2R_4476885_INS [dm3] 2R_8589380_INS [dm6]	T	TGCA	7.725e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1579430	3L_1579430_SNP [dm3] 3L_1579430_SNP [dm6]	T	A	7.757e^-5	0.852	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
X	14808558	X_14808558_SNP [dm3] X_14914525_SNP [dm6]	T	A	7.761e^-5	0.852	UPSTREAM CG12398 INTRON Flo2
3R	25550922	3R_25550922_SNP [dm3] 3R_29725200_SNP [dm6]	T	C	7.768e^-5	0.852	UPSTREAM Kul & 1 other DOWNSTREAM Pcd INTRON CG18731	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
X	8715356	X_8715356_INS [dm3] X_8821323_INS [dm6]	A	AAAGCCGCAGCCAAAGC...	7.777e^-5	0.852	INTERGENIC
X	8732202	X_8732202_SNP [dm3] X_8838169_SNP [dm6]	A	T	7.780e^-5	0.852	UPSTREAM CG12075 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6651679	3L_6651679_SNP [dm3] 3L_6658579_SNP [dm6]	A	T	7.790e^-5	0.852	INTERGENIC
3R	3080534	3R_3080534_SNP [dm3] 3R_7254812_SNP [dm6]	C	T	7.817e^-5	0.852	INTRON Gld
2R	5718721	2R_5718721_SNP [dm3] 2R_9831216_SNP [dm6]	T	G	7.935e^-5	0.852	INTRON hebe
3R	16939762	3R_16939762_SNP [dm3] 3R_21114040_SNP [dm6]	C	T	7.956e^-5	0.852	SYNONYMOUS_CODING Rab11
3L	6651691	3L_6651691_SNP [dm3] 3L_6658591_SNP [dm6]	G	T	8.081e^-5	0.852	INTERGENIC
2L	9665695	2L_9665695_SNP [dm3] 2L_9665695_SNP [dm6]	C	A	8.089e^-5	0.852	INTERGENIC
X	5741440	X_5741440_SNP [dm3] X_5847407_SNP [dm6]	G	A	8.158e^-5	0.852	INTERGENIC
2R	9756127	2R_9756127_SNP [dm3] 2R_13868622_SNP [dm6]	G	T	8.163e^-5	0.852	INTRON shot
3L	20283667	3L_20283667_SNP [dm3] 3L_20290567_SNP [dm6]	C	G	8.171e^-5	0.852	DOWNSTREAM CR43890 INTRON gogo
2R	16101678	2R_16101678_SNP [dm3] 2R_20214173_SNP [dm6]	A	G	8.319e^-5	0.852	INTERGENIC
X	8789687	X_8789687_SNP [dm3] X_8895654_SNP [dm6]	T	A	8.354e^-5	0.852	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3L	20313549	3L_20313549_SNP [dm3] 3L_20320449_SNP [dm6]	A	G	8.390e^-5	0.852	UPSTREAM Spn77Bb DOWNSTREAM Spn77Ba INTERGENIC
3L	1579466	3L_1579466_SNP [dm3] 3L_1579466_SNP [dm6]	G	A	8.428e^-5	0.852	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	8108537	3R_8108537_SNP [dm3] 3R_12282815_SNP [dm6]	T	G	8.454e^-5	0.852	INTRON svp
3L	22156733	3L_22156733_DEL [dm3] 3L_22163633_DEL [dm6]	ACATTTTCTTTGGCCCACTC...	A	8.510e^-5	0.852	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22305066	3L_22305066_SNP [dm3] 3L_22311966_SNP [dm6]	A	G	8.510e^-5	0.852	INTRON Ten-m
3R	4031912	3R_4031912_SNP [dm3] 3R_8206190_SNP [dm6]	G	C	8.600e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11148965	3L_11148965_SNP [dm3] 3L_11155865_SNP [dm6]	A	G	8.715e^-5	0.852	INTRON CG32082
3R	2594889	3R_2594889_INS [dm3] 3R_6769167_INS [dm6]	T	TTTT	8.716e^-5	0.852	INTRON CR42721	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16927640	3R_16927640_SNP [dm3] 3R_21101918_SNP [dm6]	C	A	8.808e^-5	0.852	UPSTREAM CG5745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1998197	2L_1998197_SNP [dm3] 2L_1998197_SNP [dm6]	T	C	8.890e^-5	0.852	INTRON CG33543
3R	3034853	3R_3034853_SNP [dm3] 3R_7209131_SNP [dm6]	A	G	8.890e^-5	0.852	UPSTREAM CG1288 INTERGENIC
3L	22382701	3L_22382701_DEL [dm3] 3L_22389601_DEL [dm6]	AA	T	8.915e^-5	0.852	INTRON Ten-m	TF binding site mE1_TFBS_HSA
3L	22391631	3L_22391631_SNP [dm3] 3L_22398531_SNP [dm6]	T	C	8.915e^-5	0.852	INTRON Ten-m	TF binding site BDTNP1_TFBS_da
X	20210195	X_20210195_SNP [dm3] X_20339168_SNP [dm6]	A	C	9.022e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	957045	2R_957045_SNP [dm3] 2R_5069540_SNP [dm6]	C	T	9.061e^-5	0.852	INTRON TpnC41C
3R	2604912	3R_2604912_SNP [dm3] 3R_6779190_SNP [dm6]	G	A	9.062e^-5	0.852	UPSTREAM CR43435 INTRON CR42721
X	6106445	X_6106445_SNP [dm3] X_6212412_SNP [dm6]	G	A	9.122e^-5	0.852	INTERGENIC
3L	22202149	3L_22202149_SNP [dm3] 3L_22209049_SNP [dm6]	G	A	9.175e^-5	0.852	INTRON olf413
2L	14609545	2L_14609545_SNP [dm3] 2L_14609545_SNP [dm6]	G	A	9.188e^-5	0.852	INTRON osp
2R	14415667	2R_14415667_SNP [dm3] 2R_18528162_SNP [dm6]	C	T	9.194e^-5	0.852	INTRON CG10924	TF binding site mE1_TFBS_Trl
X	18472969	X_18472969_SNP [dm3] X_18578936_SNP [dm6]	A	G	9.229e^-5	0.852	INTERGENIC
3R	19419700	3R_19419700_SNP [dm3] 3R_23593978_SNP [dm6]	T	C	9.230e^-5	0.852	SYNONYMOUS_CODING CG16723
2R	2116698	2R_2116698_SNP [dm3] 2R_6229193_SNP [dm6]	T	A	9.252e^-5	0.852	UPSTREAM bin3 INTRON bin3
3R	24461103	3R_24461103_SNP [dm3] 3R_28635381_SNP [dm6]	C	T	9.263e^-5	0.852	UPSTREAM CG10011 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2110931	2L_2110931_SNP [dm3] 2L_2110931_SNP [dm6]	T	A	9.279e^-5	0.852	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	1952811	2L_1952811_SNP [dm3] 2L_1952811_SNP [dm6]	G	T	9.281e^-5	0.852	SYNONYMOUS_CODING erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9907279	3L_9907279_SNP [dm3] 3L_9914179_SNP [dm6]	C	T	9.309e^-5	0.852	INTRON CG34356
3R	24727697	3R_24727697_SNP [dm3] 3R_28901975_SNP [dm6]	A	T	9.321e^-5	0.852	UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_HSA
3L	6203832	3L_6203832_SNP [dm3] 3L_6210732_SNP [dm6]	A	G	9.347e^-5	0.852	SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11060817	3L_11060817_SNP [dm3] 3L_11067717_SNP [dm6]	C	T	9.400e^-5	0.852	SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25149096	3R_25149096_SNP [dm3] 3R_29323374_SNP [dm6]	C	G	9.505e^-5	0.852	INTERGENIC
X	4660408	X_4660408_SNP [dm3] X_4766375_SNP [dm6]	T	C	9.610e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24462999	3R_24462999_SNP [dm3] 3R_28637277_SNP [dm6]	T	G	9.658e^-5	0.852	INTRON CG9988	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24723392	3R_24723392_SNP [dm3] 3R_28897670_SNP [dm6]	A	T	9.658e^-5	0.852	INTRON Doa
3L	9908540	3L_9908540_SNP [dm3] 3L_9915440_SNP [dm6]	A	T	9.662e^-5	0.852	INTRON CG34356
3R	23356389	3R_23356389_SNP [dm3] 3R_27530667_SNP [dm6]	G	C	9.717e^-5	0.852	INTRON CG12885
3L	22270316	3L_22270316_SNP [dm3] 3L_22277216_SNP [dm6]	A	T	9.767e^-5	0.852	UPSTREAM srpk79D INTRON srpk79D	TF binding site mE1_TFBS_cad
3R	24388212	3R_24388212_SNP [dm3] 3R_28562490_SNP [dm6]	T	C	9.781e^-5	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	21891716	X_21891716_SNP [dm3] X_22489880_SNP [dm6]	T	C	9.792e^-5	0.852	INTRON l_1_G0196 & 1 other
3L	7852242	3L_7852242_SNP [dm3] 3L_7859142_SNP [dm6]	C	T	9.946e^-5	0.852	INTRON Pdp1
3R	24500300	3R_24500300_SNP [dm3] 3R_28674578_SNP [dm6]	C	G	9.986e^-5	0.852	UPSTREAM CG9990 INTERGENIC
X	8450264	X_8450264_SNP [dm3] X_8556231_SNP [dm6]	G	A	1.006e^-4	0.852	SYNONYMOUS_CODING IntS4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13834360	2R_13834360_SNP [dm3] 2R_17946855_SNP [dm6]	A	T	1.010e^-4	0.852	INTERGENIC
3R	19222948	3R_19222948_SNP [dm3] 3R_23397226_SNP [dm6]	A	G	1.013e^-4	0.852	INTERGENIC
3L	22196644	3L_22196644_SNP [dm3] 3L_22203544_SNP [dm6]	G	A	1.021e^-4	0.852	INTRON olf413
2L	9938634	2L_9938634_SNP [dm3] 2L_9938634_SNP [dm6]	C	T	1.022e^-4	0.852	SYNONYMOUS_CODING Apf UPSTREAM CG4619 & 1 other EXON CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2L	9938884	2L_9938884_SNP [dm3] 2L_9938884_SNP [dm6]	A	C	1.022e^-4	0.852	START_GAINED CG4619 UTR_5_PRIME CG4619 UPSTREAM CG31712 & 1 other DOWNSTREAM CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	22157429	3L_22157429_SNP [dm3] 3L_22164329_SNP [dm6]	T	C	1.027e^-4	0.852	INTRON olf413	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	22182115	3L_22182115_SNP [dm3] 3L_22189015_SNP [dm6]	G	A	1.027e^-4	0.852	INTRON olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19285264	3R_19285264_SNP [dm3] 3R_23459542_SNP [dm6]	A	C	1.029e^-4	0.852	INTRON CG4374
2R	10877011	2R_10877011_SNP [dm3] 2R_14989506_SNP [dm6]	T	A	1.041e^-4	0.852	INTRON pcs & 1 other
3R	24500281	3R_24500281_SNP [dm3] 3R_28674559_SNP [dm6]	A	C	1.042e^-4	0.852	UPSTREAM CG9990 INTERGENIC
2L	1945872	2L_1945872_SNP [dm3] 2L_1945872_SNP [dm6]	A	G	1.046e^-4	0.852	SYNONYMOUS_CODING CG33673 UPSTREAM CG15357	regulatory region REDfly_CRMs
2L	11475281	2L_11475281_SNP [dm3] 2L_11475281_SNP [dm6]	A	C	1.056e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk
3R	19203646	3R_19203646_SNP [dm3] 3R_23377924_SNP [dm6]	G	A	1.058e^-4	0.852	SPLICE_SITE_REGION CG4393 SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_inv
3R	21009447	3R_21009447_SNP [dm3] 3R_25183725_SNP [dm6]	C	G	1.063e^-4	0.852	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21505042	3R_21505042_SNP [dm3] 3R_25679320_SNP [dm6]	C	T	1.064e^-4	0.852	UTR_3_PRIME CG5039 & 1 other UPSTREAM CG4730	TF binding site mE1_TFBS_sens
3R	19181113	3R_19181113_SNP [dm3] 3R_23355391_SNP [dm6]	A	G	1.076e^-4	0.852	UTR_3_PRIME ATPsyn-Cf6 UPSTREAM Sec13 DOWNSTREAM DNApol-epsilon	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	19414337	X_19414337_SNP [dm3] X_19520304_SNP [dm6]	A	T	1.082e^-4	0.852	SPLICE_SITE_REGION l_1_G0156 INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19076318	3R_19076318_SNP [dm3] 3R_23250596_SNP [dm6]	A	T	1.087e^-4	0.852	SPLICE_SITE_REGION CG4449 UPSTREAM EloA INTRON CG4449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk
2L	11607667	2L_11607667_SNP [dm3] 2L_11607667_SNP [dm6]	C	G	1.097e^-4	0.852	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25552455	3R_25552455_SNP [dm3] 3R_29726733_SNP [dm6]	C	T	1.099e^-4	0.852	INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6261382	X_6261382_SNP [dm3] X_6367349_SNP [dm6]	G	T	1.105e^-4	0.852	INTRON Marf
2L	12246763	2L_12246763_SNP [dm3] 2L_12246763_SNP [dm6]	T	G	1.122e^-4	0.852	INTRON aret
3L	22479363	3L_22479363_SNP [dm3] 3L_22486263_SNP [dm6]	G	T	1.136e^-4	0.852	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8628220	X_8628220_SNP [dm3] X_8734187_SNP [dm6]	A	C	1.143e^-4	0.852	INTERGENIC
3R	19060410	3R_19060410_SNP [dm3] 3R_23234688_SNP [dm6]	A	T	1.155e^-4	0.852	INTRON CG4467
3L	22562313	3L_22562313_SNP [dm3] 3L_22569213_SNP [dm6]	C	T	1.158e^-4	0.852	INTERGENIC
2L	14474334	2L_14474334_SNP [dm3] 2L_14474334_SNP [dm6]	T	A	1.160e^-4	0.852	INTERGENIC
2R	4481284	2R_4481284_SNP [dm3] 2R_8593779_SNP [dm6]	G	C	1.161e^-4	0.852	DOWNSTREAM CG43183 & 1 other INTERGENIC
3L	7283874	3L_7283874_SNP [dm3] 3L_7290774_SNP [dm6]	G	T	1.167e^-4	0.852	INTRON unc-13-4A
3L	6530169	3L_6530169_SNP [dm3] 3L_6537069_SNP [dm6]	C	T	1.170e^-4	0.852	INTRON sfl
X	14808552	X_14808552_SNP [dm3] X_14914519_SNP [dm6]	G	A	1.173e^-4	0.852	UPSTREAM CG12398 INTRON Flo2
X	6493865	X_6493865_SNP [dm3] X_6599832_SNP [dm6]	A	T	1.180e^-4	0.852	UPSTREAM pigs DOWNSTREAM APC7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1946887	2L_1946887_SNP [dm3] 2L_1946887_SNP [dm6]	C	A	1.181e^-4	0.852	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	19163499	X_19163499_SNP [dm3] X_19269466_SNP [dm6]	T	C	1.182e^-4	0.852	UPSTREAM CG8010 INTRON Vav	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22162524	3L_22162524_SNP [dm3] 3L_22169424_SNP [dm6]	C	T	1.202e^-4	0.852	INTRON olf413
3R	9995075	3R_9995075_SNP [dm3] 3R_14169353_SNP [dm6]	G	A	1.209e^-4	0.852	UTR_3_PRIME Dop1R1
3L	9908846	3L_9908846_SNP [dm3] 3L_9915746_SNP [dm6]	A	T	1.213e^-4	0.852	INTRON CG34356	TF binding site mE1_TFBS_inv
3R	21877044	3R_21877044_SNP [dm3] 3R_26051322_SNP [dm6]	C	T	1.220e^-4	0.852	SYNONYMOUS_CODING Exo84	TF binding site BDTNP1_TFBS_prd
3R	3055176	3R_3055176_INS [dm3] 3R_7229454_INS [dm6]	A	AA	1.226e^-4	0.852	INTRON CG14608
3L	3844948	3L_3844948_SNP [dm3] 3L_3844948_SNP [dm6]	A	T	1.227e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	8379112	2L_8379112_SNP [dm3] 2L_8379112_SNP [dm6]	G	A	1.232e^-4	0.852	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16891439	X_16891439_SNP [dm3] X_16997406_SNP [dm6]	G	A	1.237e^-4	0.852	INTRON CG45002
3R	21512423	3R_21512423_SNP [dm3] 3R_25686701_SNP [dm6]	A	G	1.238e^-4	0.852	NON_SYNONYMOUS_CODING CLS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	17972446	X_17972446_SNP [dm3] X_18078413_SNP [dm6]	A	C	1.241e^-4	0.852	UTR_3_PRIME Dhc16F DOWNSTREAM CG7536
3L	10837560	3L_10837560_SNP [dm3] 3L_10844460_SNP [dm6]	A	C	1.245e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11354944	2L_11354944_SNP [dm3] 2L_11354944_SNP [dm6]	G	A	1.246e^-4	0.852	DOWNSTREAM CR44586 INTERGENIC	regulatory region REDfly_CRMs
3L	7019879	3L_7019879_SNP [dm3] 3L_7026779_SNP [dm6]	A	G	1.247e^-4	0.852	UTR_5_PRIME CG17744 INTRON Mp
3L	22355330	3L_22355330_SNP [dm3] 3L_22362230_SNP [dm6]	T	A	1.249e^-4	0.852	INTRON Ten-m
3L	17337056	3L_17337056_SNP [dm3] 3L_17343956_SNP [dm6]	C	T	1.249e^-4	0.852	SYNONYMOUS_CODING brv2 DOWNSTREAM Mip
3R	19078033	3R_19078033_SNP [dm3] 3R_23252311_SNP [dm6]	G	T	1.252e^-4	0.852	SYNONYMOUS_CODING EloA START_GAINED EloA UTR_5_PRIME EloA UPSTREAM CG4449	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7076917	3L_7076917_SNP [dm3] 3L_7083817_SNP [dm6]	T	C	1.256e^-4	0.852	INTERGENIC
3R	19181852	3R_19181852_SNP [dm3] 3R_23356130_SNP [dm6]	T	C	1.258e^-4	0.852	UPSTREAM Sec13 & 1 other DOWNSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	13980612	2L_13980612_SNP [dm3] 2L_13980612_SNP [dm6]	G	A	1.259e^-4	0.852	SPLICE_SITE_REGION NimC2 INTRON NimC2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	25149041	3R_25149041_SNP [dm3] 3R_29323319_SNP [dm6]	G	A	1.262e^-4	0.852	INTERGENIC
3R	4290773	3R_4290773_SNP [dm3] 3R_8465051_SNP [dm6]	T	G	1.267e^-4	0.852	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25573231	3R_25573231_INS [dm3] 3R_29747509_INS [dm6]	GTTC	ACATA	1.268e^-4	0.852	UTR_3_PRIME IntS11 DOWNSTREAM ATPsyn-gamma	TF binding site mE1_TFBS_cad
3L	22493916	3L_22493916_SNP [dm3] 3L_22500816_SNP [dm6]	G	A	1.273e^-4	0.852	UPSTREAM CG43312 INTERGENIC
3L	22516910	3L_22516910_SNP [dm3] 3L_22523810_SNP [dm6]	G	T	1.273e^-4	0.852	INTERGENIC
X	3224720	X_3224720_SNP [dm3] X_3330687_SNP [dm6]	A	T	1.282e^-4	0.852	INTRON CR44886 & 1 other
3L	22172375	3L_22172375_SNP [dm3] 3L_22179275_SNP [dm6]	A	T	1.282e^-4	0.852	INTRON olf413	TF binding site BDTNP1_TFBS_da
X	9211373	X_9211373_SNP [dm3] X_9317340_SNP [dm6]	G	C	1.285e^-4	0.852	DOWNSTREAM c12.1 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
2L	14609651	2L_14609651_SNP [dm3] 2L_14609651_SNP [dm6]	A	T	1.286e^-4	0.852	INTRON osp
3R	2626702	3R_2626702_SNP [dm3] 3R_6800980_SNP [dm6]	G	A	1.286e^-4	0.852	SPLICE_SITE_REGION Dfd SYNONYMOUS_CODING Dfd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	3253651	X_3253651_SNP [dm3] X_3359618_SNP [dm6]	A	T	1.290e^-4	0.852	INTERGENIC
X	3253657	X_3253657_SNP [dm3] X_3359624_SNP [dm6]	T	A	1.290e^-4	0.852	INTERGENIC
2R	20400540	2R_20400540_SNP [dm3] 2R_24513017_SNP [dm6]	A	G	1.302e^-4	0.852	SYNONYMOUS_CODING Letm1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2R	20441335	2R_20441335_SNP [dm3] 2R_24553812_SNP [dm6]	T	G	1.305e^-4	0.852	INTRON CG4622 & 1 other
3R	25408762	3R_25408762_SNP [dm3] 3R_29583040_SNP [dm6]	C	T	1.305e^-4	0.852	INTERGENIC
3L	11066068	3L_11066068_SNP [dm3] 3L_11072968_SNP [dm6]	G	C	1.307e^-4	0.852	SYNONYMOUS_CODING Mocs1 UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239
3R	19189212	3R_19189212_SNP [dm3] 3R_23363490_SNP [dm6]	G	A	1.313e^-4	0.852	NON_SYNONYMOUS_CODING CG4408
X	8715269	X_8715269_SNP [dm3] X_8821236_SNP [dm6]	A	G	1.315e^-4	0.852	INTERGENIC
3L	14004062	3L_14004062_SNP [dm3] 3L_14010962_SNP [dm6]	C	A	1.317e^-4	0.852	INTRON upSET	TF binding site mE1_TFBS_cad
2L	1939541	2L_1939541_SNP [dm3] 2L_1939541_SNP [dm6]	T	C	1.318e^-4	0.852	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	14819111	X_14819111_SNP [dm3] X_14925078_SNP [dm6]	C	T	1.318e^-4	0.852	UPSTREAM Flo2 INTRON Flo2
3R	19091468	3R_19091468_SNP [dm3] 3R_23265746_SNP [dm6]	A	T	1.321e^-4	0.852	UTR_3_PRIME orb
3L	20313496	3L_20313496_INS [dm3] 3L_20320396_INS [dm6]	T	TA	1.326e^-4	0.852	UPSTREAM Spn77Bb DOWNSTREAM Spn77Ba INTERGENIC
3L	12152332	3L_12152332_SNP [dm3] 3L_12159232_SNP [dm6]	A	G	1.327e^-4	0.852	SYNONYMOUS_CODING CG9760
2L	14470032	2L_14470032_DEL [dm3] 2L_14470032_DEL [dm6]	GA	G	1.332e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3253687	X_3253687_SNP [dm3] X_3359654_SNP [dm6]	G	A	1.360e^-4	0.852	INTERGENIC
2R	20396883	2R_20396883_DEL [dm3] 2R_24509360_DEL [dm6]	GCCATTCAGCAGTAGTTTCT...	G	1.366e^-4	0.852	DOWNSTREAM Letm1 INTERGENIC
3R	19253477	3R_19253477_SNP [dm3] 3R_23427755_SNP [dm6]	A	G	1.384e^-4	0.852	INTRON CG4374	TF binding site BDTNP1_TFBS_prd
2L	9750542	2L_9750542_SNP [dm3] 2L_9750542_SNP [dm6]	C	G	1.386e^-4	0.852	UPSTREAM Cyp4e3 INTERGENIC
3R	25462331	3R_25462331_SNP [dm3] 3R_29636609_SNP [dm6]	C	G	1.388e^-4	0.852	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
2L	1952640	2L_1952640_SNP [dm3] 2L_1952640_SNP [dm6]	G	A	1.392e^-4	0.852	SYNONYMOUS_CODING erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2598429	X_2598429_SNP [dm3] X_2704396_SNP [dm6]	A	T	1.399e^-4	0.852	UPSTREAM eIF2B-beta & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	1939340	2L_1939340_SNP [dm3] 2L_1939340_SNP [dm6]	T	A	1.420e^-4	0.852	SYNONYMOUS_CODING CG7337 INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1940585	2L_1940585_SNP [dm3] 2L_1940585_SNP [dm6]	G	A	1.420e^-4	0.852	SYNONYMOUS_CODING CG7337 INTRON CG7337
2L	1942078	2L_1942078_SNP [dm3] 2L_1942078_SNP [dm6]	A	T	1.420e^-4	0.852	INTRON CG7337
3L	7796718	3L_7796718_SNP [dm3] 3L_7803618_SNP [dm6]	G	A	1.420e^-4	0.852	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25546507	3R_25546507_SNP [dm3] 3R_29720785_SNP [dm6]	A	G	1.422e^-4	0.852	INTRON CG15506
2L	1937404	2L_1937404_SNP [dm3] 2L_1937404_SNP [dm6]	C	T	1.429e^-4	0.852	DOWNSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site BDTNP1_TFBS_z
2R	16091486	2R_16091486_SNP [dm3] 2R_20203981_SNP [dm6]	T	G	1.430e^-4	0.852	INTERGENIC
2L	1942764	2L_1942764_SNP [dm3] 2L_1942764_SNP [dm6]	G	A	1.441e^-4	0.852	INTRON CG7337
3L	3327210	3L_3327210_SNP [dm3] 3L_3327210_SNP [dm6]	A	G	1.443e^-4	0.852	INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc
3R	25464910	3R_25464910_SNP [dm3] 3R_29639188_SNP [dm6]	G	C	1.450e^-4	0.852	INTRON Dop1R2
3L	20539241	3L_20539241_SNP [dm3] 3L_20546141_SNP [dm6]	C	G	1.455e^-4	0.852	INTERGENIC
2L	13980606	2L_13980606_SNP [dm3] 2L_13980606_SNP [dm6]	G	A	1.474e^-4	0.852	INTRON NimC2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	2384650	2L_2384650_SNP [dm3] 2L_2384650_SNP [dm6]	T	C	1.478e^-4	0.852	SYNONYMOUS_CODING CG9870 DOWNSTREAM CG3557
2R	2441071	2R_2441071_SNP [dm3] 2R_6553566_SNP [dm6]	T	A	1.486e^-4	0.852	INTRON jing	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2992046	3R_2992046_SNP [dm3] 3R_7166324_SNP [dm6]	T	C	1.490e^-4	0.852	INTRON sas
2L	4080380	2L_4080380_SNP [dm3] 2L_4080380_SNP [dm6]	C	T	1.490e^-4	0.852	INTRON ed	TF binding site BDTNP1_TFBS_dl
2R	20400513	2R_20400513_SNP [dm3] 2R_24512990_SNP [dm6]	A	G	1.492e^-4	0.852	SYNONYMOUS_CODING Letm1	TF binding site mE1_TFBS_cad
3L	22125891	3L_22125891_SNP [dm3] 3L_22132791_SNP [dm6]	G	A	1.494e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	457563	3L_457563_SNP [dm3] 3L_457563_SNP [dm6]	T	C	1.496e^-4	0.852	INTRON klar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2374661	2L_2374661_SNP [dm3] 2L_2374661_SNP [dm6]	G	T	1.503e^-4	0.852	UPSTREAM CG15390 & 1 other DOWNSTREAM CR44982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_ttk mE1_TFBS_Ubx
X	14739264	X_14739264_SNP [dm3] X_14845231_SNP [dm6]	A	T	1.507e^-4	0.852	UPSTREAM CG12539 INTRON Flo2
3R	15749910	3R_15749910_SNP [dm3] 3R_19924188_SNP [dm6]	A	G	1.508e^-4	0.852	INTRON CG4462
3R	2594814	3R_2594814_SNP [dm3] 3R_6769092_SNP [dm6]	T	A	1.509e^-4	0.852	INTRON CR42721	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25940366	3R_25940366_SNP [dm3] 3R_30114644_SNP [dm6]	T	C	1.510e^-4	0.852	INTRON sima
3R	2604922	3R_2604922_SNP [dm3] 3R_6779200_SNP [dm6]	C	T	1.516e^-4	0.852	UPSTREAM CR43435 INTRON CR42721
3L	16863314	3L_16863314_SNP [dm3] 3L_16870214_SNP [dm6]	A	G	1.518e^-4	0.852	INTRON Lmpt
3R	23357999	3R_23357999_SNP [dm3] 3R_27532277_SNP [dm6]	G	T	1.520e^-4	0.852	SYNONYMOUS_CODING CG12885	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11607663	2L_11607663_SNP [dm3] 2L_11607663_SNP [dm6]	T	G	1.521e^-4	0.852	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9758429	2R_9758429_SNP [dm3] 2R_13870924_SNP [dm6]	T	A	1.522e^-4	0.852	INTRON shot
3R	19078120	3R_19078120_SNP [dm3] 3R_23252398_SNP [dm6]	A	C	1.523e^-4	0.852	SYNONYMOUS_CODING EloA UTR_5_PRIME EloA UPSTREAM CG4449	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25669268	3R_25669268_SNP [dm3] 3R_29843546_SNP [dm6]	C	T	1.524e^-4	0.852	INTRON Cad99C
2L	3587649	2L_3587649_SNP [dm3] 2L_3587649_SNP [dm6]	G	A	1.525e^-4	0.852	DOWNSTREAM CR43823 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8379106	2L_8379106_SNP [dm3] 2L_8379106_SNP [dm6]	A	C	1.526e^-4	0.852	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24051722	3R_24051722_SNP [dm3] 3R_28226000_SNP [dm6]	T	A	1.537e^-4	0.852	INTRON CG34354	TF binding site mE1_TFBS_HSA
2L	9265016	2L_9265016_DEL [dm3] 2L_9265016_DEL [dm6]	AAGTAAATTGTATCGGATTT...	C	1.538e^-4	0.852	INTRON Ggamma30A
2R	8636273	2R_8636273_DEL [dm3] 2R_12748768_DEL [dm6]	TCATGTATGTT...	T	1.539e^-4	0.852	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10447429	X_10447429_SNP [dm3] X_10553396_SNP [dm6]	A	G	1.539e^-4	0.852	INTRON spri	TF binding site mE1_TFBS_Kr
2R	14610340	2R_14610340_SNP [dm3] 2R_18722835_SNP [dm6]	A	C	1.550e^-4	0.852	INTRON Hs3st-A
X	11204972	X_11204972_SNP [dm3] X_11310939_SNP [dm6]	C	T	1.554e^-4	0.852	SYNONYMOUS_CODING Ir10a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16174938	3L_16174938_SNP [dm3] 3L_16181838_SNP [dm6]	A	T	1.557e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25551430	3R_25551430_SNP [dm3] 3R_29725708_SNP [dm6]	C	A	1.557e^-4	0.852	UPSTREAM Kul & 1 other DOWNSTREAM CG18731 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4916171	X_4916171_SNP [dm3] X_5022138_SNP [dm6]	C	T	1.559e^-4	0.852	INTRON CR44833	regulatory region REDfly_CRMs
3R	24725382	3R_24725382_SNP [dm3] 3R_28899660_SNP [dm6]	T	G	1.568e^-4	0.852	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17805003	X_17805003_SNP [dm3] X_17910970_SNP [dm6]	A	G	1.572e^-4	0.852	UTR_3_PRIME Vps4 UPSTREAM CG6847 DOWNSTREAM Vps4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13542902	2R_13542902_INS [dm3] 2R_17655397_INS [dm6]	C	CGC	1.577e^-4	0.852	INTRON CCHa1-R	TF binding site mE1_TFBS_sens
3R	3004559	3R_3004559_SNP [dm3] 3R_7178837_SNP [dm6]	G	A	1.585e^-4	0.852	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18572023	2L_18572023_SNP [dm3] 2L_18572023_SNP [dm6]	G	A	1.585e^-4	0.852	START_GAINED Pde11 UTR_5_PRIME Pde11 INTRON Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	1841240	3R_1841240_SNP [dm3] 3R_6015518_SNP [dm6]	T	C	1.591e^-4	0.852	INTERGENIC
X	6530877	X_6530877_SNP [dm3] X_6636844_SNP [dm6]	C	T	1.592e^-4	0.852	UPSTREAM CR44817 DOWNSTREAM CG14443 INTRON pigs	TF binding site BDTNP1_TFBS_prd
3L	1039511	3L_1039511_SNP [dm3] 3L_1039511_SNP [dm6]	C	G	1.595e^-4	0.852	INTRON bab1
3R	3102363	3R_3102363_SNP [dm3] 3R_7276641_SNP [dm6]	G	T	1.600e^-4	0.852	INTRON rn	TF binding site mE1_TFBS_chinmo
3L	16175430	3L_16175430_SNP [dm3] 3L_16182330_SNP [dm6]	T	C	1.604e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12544645	2R_12544645_SNP [dm3] 2R_16657140_SNP [dm6]	A	G	1.605e^-4	0.852	SYNONYMOUS_CODING Picot
3R	15764569	3R_15764569_SNP [dm3] 3R_19938847_SNP [dm6]	T	C	1.607e^-4	0.852	INTRON Hs6st
2L	20420004	2L_20420004_SNP [dm3] 2L_20420004_SNP [dm6]	A	G	1.607e^-4	0.852	DOWNSTREAM snoRNA:Psi18S-640b & 5 others INTRON Arpc2 EXON snoRNA:Psi18S-525g
X	904604	X_904604_DEL [dm3] X_1010571_DEL [dm6]	TA	T	1.608e^-4	0.852	DOWNSTREAM TfIIA-S-2 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_ttk transposable element FlyBase
3R	25567534	3R_25567534_SNP [dm3] 3R_29741812_SNP [dm6]	C	T	1.618e^-4	0.852	UTR_3_PRIME CG1969 DOWNSTREAM CG7609
3R	25973912	3R_25973912_SNP [dm3] 3R_30148190_SNP [dm6]	A	T	1.623e^-4	0.852	INTRON AdoR
3L	2375486	3L_2375486_SNP [dm3] 3L_2375486_SNP [dm6]	A	G	1.624e^-4	0.852	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877	TF binding site mE1_TFBS_sens
X	8789562	X_8789562_SNP [dm3] X_8895529_SNP [dm6]	C	A	1.625e^-4	0.852	INTRON Moe	TF binding site BDTNP1_TFBS_dl
2L	14176734	2L_14176734_SNP [dm3] 2L_14176734_SNP [dm6]	A	T	1.648e^-4	0.852	INTRON CG43333
X	9947849	X_9947849_SNP [dm3] X_10053816_SNP [dm6]	C	T	1.649e^-4	0.852	UTR_5_PRIME Yp1 UPSTREAM Yp1 DOWNSTREAM CR45601	regulatory region REDfly_CRMs
3R	19199160	3R_19199160_SNP [dm3] 3R_23373438_SNP [dm6]	G	A	1.649e^-4	0.852	NON_SYNONYMOUS_CODING CG42827 UPSTREAM CR44322 & 1 other	TF binding site mE1_TFBS_inv
3R	24050876	3R_24050876_SNP [dm3] 3R_28225154_SNP [dm6]	A	G	1.650e^-4	0.852	INTRON CG34354	TF binding site mE1_TFBS_HSA
2L	1946877	2L_1946877_SNP [dm3] 2L_1946877_SNP [dm6]	T	G	1.651e^-4	0.852	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	15764098	3R_15764098_SNP [dm3] 3R_19938376_SNP [dm6]	G	C	1.653e^-4	0.852	SYNONYMOUS_CODING Hs6st	TF binding site mE1_TFBS_chinmo
3L	9156940	3L_9156940_SNP [dm3] 3L_9163840_SNP [dm6]	G	A	1.669e^-4	0.852	INTRON Rdl
3R	19375844	3R_19375844_SNP [dm3] 3R_23550122_SNP [dm6]	T	C	1.682e^-4	0.852	INTERGENIC
2L	1941414	2L_1941414_SNP [dm3] 2L_1941414_SNP [dm6]	T	A	1.683e^-4	0.852	INTRON CG7337	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9855237	3L_9855237_SNP [dm3] 3L_9862137_SNP [dm6]	A	G	1.684e^-4	0.852	SYNONYMOUS_CODING iPLA2-VIA	TF binding site mE1_TFBS_sens
2L	20300724	2L_20300724_SNP [dm3] 2L_20300724_SNP [dm6]	G	A	1.688e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	3102341	3R_3102341_MNP [dm3] 3R_7276619_MNP [dm6]	TTGTG	AACAA	1.690e^-4	0.852	INTRON rn
3R	3102346	3R_3102346_INS [dm3] 3R_7276624_INS [dm6]	A	AGCAAAT	1.690e^-4	0.852	INTRON rn
3R	3102351	3R_3102351_SNP [dm3] 3R_7276629_SNP [dm6]	G	A	1.690e^-4	0.852	INTRON rn
3R	3102356	3R_3102356_MNP [dm3] 3R_7276634_MNP [dm6]	TTTGC	AAAAA	1.690e^-4	0.852	INTRON rn	TF binding site mE1_TFBS_chinmo
3R	3102361	3R_3102361_INS [dm3] 3R_7276639_INS [dm6]	T	TA	1.690e^-4	0.852	INTRON rn	TF binding site mE1_TFBS_chinmo
3R	3102365	3R_3102365_SNP [dm3] 3R_7276643_SNP [dm6]	C	T	1.690e^-4	0.852	INTRON rn	TF binding site mE1_TFBS_chinmo
2L	2124783	2L_2124783_SNP [dm3] 2L_2124783_SNP [dm6]	G	C	1.706e^-4	0.858	INTERGENIC
3R	23969626	3R_23969626_SNP [dm3] 3R_28143904_SNP [dm6]	C	T	1.714e^-4	0.859	INTERGENIC
2L	12729807	2L_12729807_SNP [dm3] 2L_12729807_SNP [dm6]	T	G	1.720e^-4	0.859	INTRON MRP	TF binding site BDTNP1_TFBS_twi
3L	8534496	3L_8534496_SNP [dm3] 3L_8541396_SNP [dm6]	C	G	1.732e^-4	0.859	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8566159	3L_8566159_SNP [dm3] 3L_8573059_SNP [dm6]	G	A	1.735e^-4	0.859	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea INTRON rhea	TF binding site mE1_TFBS_cad
X	5514866	X_5514866_SNP [dm3] X_5620833_SNP [dm6]	A	C	1.735e^-4	0.859	UPSTREAM Mlc-c INTRON Mlc-c
2L	14609693	2L_14609693_SNP [dm3] 2L_14609693_SNP [dm6]	G	C	1.738e^-4	0.859	INTRON osp
2L	2153127	2L_2153127_SNP [dm3] 2L_2153127_SNP [dm6]	G	T	1.741e^-4	0.859	INTRON AIF	TF binding site mE1_TFBS_cad
2R	12022385	2R_12022385_SNP [dm3] 2R_16134880_SNP [dm6]	A	T	1.756e^-4	0.861	INTRON spin
X	17804917	X_17804917_SNP [dm3] X_17910884_SNP [dm6]	A	T	1.759e^-4	0.861	UTR_3_PRIME Vps4 UPSTREAM CG6847 DOWNSTREAM Vps4	TF binding site BDTNP1_TFBS_dl
3R	22273412	3R_22273412_SNP [dm3] 3R_26447690_SNP [dm6]	A	G	1.759e^-4	0.861	NON_SYNONYMOUS_CODING tx
3L	22834739	3L_22834739_SNP [dm3] 3L_22841639_SNP [dm6]	G	T	1.775e^-4	0.864	DOWNSTREAM CR45659 INTERGENIC
3R	2595125	3R_2595125_SNP [dm3] 3R_6769403_SNP [dm6]	C	A	1.776e^-4	0.864	INTRON CR42721	TF binding site mE1_TFBS_cad
X	6493825	X_6493825_SNP [dm3] X_6599792_SNP [dm6]	C	T	1.777e^-4	0.864	UPSTREAM pigs DOWNSTREAM APC7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24034272	3R_24034272_SNP [dm3] 3R_28208550_SNP [dm6]	C	A	1.799e^-4	0.871	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3R	19203196	3R_19203196_SNP [dm3] 3R_23377474_SNP [dm6]	T	A	1.821e^-4	0.871	UTR_3_PRIME CG4393	TF binding site mE1_TFBS_inv
3R	21009452	3R_21009452_INS [dm3] 3R_25183730_INS [dm6]	T	TAT	1.830e^-4	0.871	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	11607662	2L_11607662_SNP [dm3] 2L_11607662_SNP [dm6]	A	T	1.830e^-4	0.871	INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19338525	2R_19338525_SNP [dm3] 2R_23451002_SNP [dm6]	G	C	1.833e^-4	0.871	INTRON CG43795
X	14739372	X_14739372_DEL [dm3] X_14845339_DEL [dm6]	CTCCAGTGAAC...	C	1.839e^-4	0.871	UPSTREAM CG12539 INTRON Flo2
3R	21341403	3R_21341403_SNP [dm3] 3R_25515681_SNP [dm6]	T	A	1.839e^-4	0.871	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	4997354	2R_4997354_SNP [dm3] 2R_9109849_SNP [dm6]	G	A	1.842e^-4	0.871	UPSTREAM Pmm45A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13819226	X_13819226_INS [dm3] X_13925193_INS [dm6]	A	AA	1.843e^-4	0.871	INTRON mamo
2L	14609434	2L_14609434_SNP [dm3] 2L_14609434_SNP [dm6]	C	A	1.845e^-4	0.871	INTRON osp
3R	2599327	3R_2599327_DEL [dm3] 3R_6773605_DEL [dm6]	GCGACCTTAAACATTTTACT...	TG	1.848e^-4	0.871	INTRON CR42721	TF binding site mE1_TFBS_cad
3R	15432992	3R_15432992_SNP [dm3] 3R_19607270_SNP [dm6]	T	C	1.861e^-4	0.871	UTR_5_PRIME CG17751 DOWNSTREAM CG7342
3R	2604150	3R_2604150_SNP [dm3] 3R_6778428_SNP [dm6]	G	A	1.864e^-4	0.871	DOWNSTREAM CR42721 INTRON CR42721 EXON CR43435
3L	14117522	3L_14117522_SNP [dm3] 3L_14124422_SNP [dm6]	C	T	1.874e^-4	0.871	INTRON Sox21b
2L	1350919	2L_1350919_SNP [dm3] 2L_1350919_SNP [dm6]	A	G	1.875e^-4	0.871	DOWNSTREAM CG5556 INTERGENIC
2R	4191335	2R_4191335_SNP [dm3] 2R_8303830_SNP [dm6]	T	G	1.881e^-4	0.871	UPSTREAM CR44447 INTERGENIC
3R	24582240	3R_24582240_SNP [dm3] 3R_28756518_SNP [dm6]	T	A	1.885e^-4	0.871	NON_SYNONYMOUS_CODING CG9997 DOWNSTREAM aqrs	TF binding site BDTNP1_TFBS_bcd
3L	20538823	3L_20538823_SNP [dm3] 3L_20545723_SNP [dm6]	T	C	1.889e^-4	0.871	INTERGENIC
2R	10687447	2R_10687447_SNP [dm3] 2R_14799942_SNP [dm6]	A	G	1.890e^-4	0.871	UPSTREAM kn INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	449837	3L_449837_SNP [dm3] 3L_449837_SNP [dm6]	C	T	1.893e^-4	0.871	INTRON klar
3R	13924093	3R_13924093_SNP [dm3] 3R_18098371_SNP [dm6]	A	T	1.893e^-4	0.871	INTRON sr
2R	19184109	2R_19184109_SNP [dm3] 2R_23296586_SNP [dm6]	G	A	1.894e^-4	0.871	INTERGENIC
3R	2592713	3R_2592713_SNP [dm3] 3R_6766991_SNP [dm6]	A	G	1.901e^-4	0.871	UPSTREAM CR42721 DOWNSTREAM CR44930 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	19414480	X_19414480_SNP [dm3] X_19520447_SNP [dm6]	T	C	1.904e^-4	0.871	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	2593104	3R_2593104_SNP [dm3] 3R_6767382_SNP [dm6]	A	C	1.911e^-4	0.872	DOWNSTREAM CR44930 INTRON CR42721	TF binding site mE1_TFBS_cad
X	11076873	X_11076873_DEL [dm3] X_11182840_DEL [dm6]	ATTTACAACAATT...	A	1.932e^-4	0.875	UPSTREAM CG15200 INTERGENIC
3L	7171942	3L_7171942_SNP [dm3] 3L_7178842_SNP [dm6]	G	A	1.938e^-4	0.875	INTRON Dscam2
3L	14009337	3L_14009337_SNP [dm3] 3L_14016237_SNP [dm6]	C	A	1.950e^-4	0.875	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8378510	X_8378510_SNP [dm3] X_8484477_SNP [dm6]	T	A	1.955e^-4	0.875	UPSTREAM CG33223 DOWNSTREAM otu EXON CR43834
3R	19182144	3R_19182144_SNP [dm3] 3R_23356422_SNP [dm6]	T	A	1.958e^-4	0.875	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	3020147	3R_3020147_SNP [dm3] 3R_7194425_SNP [dm6]	A	C	1.961e^-4	0.875	NON_SYNONYMOUS_CODING lap INTRON lap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2594946	3R_2594946_SNP [dm3] 3R_6769224_SNP [dm6]	A	T	1.964e^-4	0.875	INTRON CR42721	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	1982631	X_1982631_SNP [dm3] X_2088598_SNP [dm6]	C	A	1.969e^-4	0.875	UPSTREAM Unc-76 INTRON Unc-76
X	19878738	X_19878738_SNP [dm3] X_19984705_SNP [dm6]	A	G	1.973e^-4	0.875	INTERGENIC
X	4296547	X_4296547_SNP [dm3] X_4402514_SNP [dm6]	G	A	1.980e^-4	0.875	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8503585	3L_8503585_SNP [dm3] 3L_8510485_SNP [dm6]	T	C	1.995e^-4	0.875	UPSTREAM ZC3H3 INTRON CG6745	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17963432	X_17963432_SNP [dm3] X_18069399_SNP [dm6]	C	G	2.004e^-4	0.875	SYNONYMOUS_CODING Dhc16F
3R	25550857	3R_25550857_SNP [dm3] 3R_29725135_SNP [dm6]	A	C	2.004e^-4	0.875	UTR_5_PRIME CG18731 UPSTREAM Kul & 1 other DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
3R	2594245	3R_2594245_SNP [dm3] 3R_6768523_SNP [dm6]	G	T	2.005e^-4	0.875	INTRON CR42721	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3R	8405457	3R_8405457_SNP [dm3] 3R_12579735_SNP [dm6]	C	T	2.005e^-4	0.875	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26322858	3R_26322858_SNP [dm3] 3R_30497136_SNP [dm6]	C	T	2.006e^-4	0.875	SYNONYMOUS_CODING PH4alphaNE1 UPSTREAM PH4alphaMP	TF binding site BDTNP1_TFBS_z mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4388166	2R_4388166_SNP [dm3] 2R_8500661_SNP [dm6]	C	G	2.007e^-4	0.875	INTRON mtt
2R	17190508	2R_17190508_SNP [dm3] 2R_21303003_SNP [dm6]	T	A	2.008e^-4	0.875	INTRON CG42672
3R	25550885	3R_25550885_SNP [dm3] 3R_29725163_SNP [dm6]	C	T	2.015e^-4	0.875	START_GAINED CG18731 UTR_5_PRIME CG18731 UPSTREAM Kul & 1 other DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
2R	2482498	2R_2482498_SNP [dm3] 2R_6594993_SNP [dm6]	A	T	2.017e^-4	0.875	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	21192491	3R_21192491_SNP [dm3] 3R_25366769_SNP [dm6]	A	G	2.022e^-4	0.875	INTRON Fur1
X	20232360	X_20232360_INS [dm3] X_20361333_INS [dm6]	AA	TTTG	2.027e^-4	0.875	INTERGENIC
3L	6112369	3L_6112369_SNP [dm3] 3L_6119269_SNP [dm6]	C	T	2.027e^-4	0.875	INTRON Ets65A
X	14106171	X_14106171_SNP [dm3] X_14212138_SNP [dm6]	A	G	2.030e^-4	0.875	UPSTREAM l_1_G0007 & 1 other INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	8501675	2R_8501675_SNP [dm3] 2R_12614170_SNP [dm6]	C	G	2.036e^-4	0.875	UTR_5_PRIME Galphaq UTR_3_PRIME CG45086 INTRON Galphaq
X	6108872	X_6108872_SNP [dm3] X_6214839_SNP [dm6]	T	A	2.049e^-4	0.875	INTERGENIC
2L	8379069	2L_8379069_SNP [dm3] 2L_8379069_SNP [dm6]	T	G	2.051e^-4	0.875	SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14004063	3L_14004063_SNP [dm3] 3L_14010963_SNP [dm6]	T	C	2.051e^-4	0.875	INTRON upSET	TF binding site mE1_TFBS_cad
3R	19430628	3R_19430628_SNP [dm3] 3R_23604906_SNP [dm6]	G	C	2.052e^-4	0.875	NON_SYNONYMOUS_CODING CG10184 DOWNSTREAM CG31145	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10611997	2L_10611997_SNP [dm3] 2L_10611997_SNP [dm6]	A	G	2.062e^-4	0.875	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6204508	3L_6204508_SNP [dm3] 3L_6211408_SNP [dm6]	C	T	2.062e^-4	0.875	SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19387488	3R_19387488_SNP [dm3] 3R_23561766_SNP [dm6]	G	A	2.069e^-4	0.876	INTRON beat-IV	TF binding site mE1_TFBS_inv
3R	12689751	3R_12689751_SNP [dm3] 3R_16864029_SNP [dm6]	G	A	2.080e^-4	0.876	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Kr
2R	10814301	2R_10814301_SNP [dm3] 2R_14926796_SNP [dm6]	G	A	2.082e^-4	0.876	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20303957	X_20303957_DEL [dm3] X_20432930_DEL [dm6]	CACTTTACATC...	C	2.087e^-4	0.876	UTR_3_PRIME mal
2L	2374770	2L_2374770_SNP [dm3] 2L_2374770_SNP [dm6]	A	G	2.090e^-4	0.876	SYNONYMOUS_CODING CG15390 UPSTREAM CG3609 DOWNSTREAM CR44982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	18573950	3L_18573950_SNP [dm3] 3L_18580850_SNP [dm6]	A	T	2.094e^-4	0.876	INTERGENIC
3R	25573243	3R_25573243_SNP [dm3] 3R_29747521_SNP [dm6]	T	G	2.101e^-4	0.876	DOWNSTREAM ATPsyn-gamma & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	2632149	3R_2632149_SNP [dm3] 3R_6806427_SNP [dm6]	A	G	2.102e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	3026752	3R_3026752_INS [dm3] 3R_7201030_INS [dm6]	G	GGAAGG	2.109e^-4	0.877	UTR_5_PRIME CG14609 DOWNSTREAM lap
3L	22711069	3L_22711069_SNP [dm3] 3L_22717969_SNP [dm6]	G	A	2.122e^-4	0.88	UTR_5_PRIME CG32452 UPSTREAM ArfGAP3 INTRON CG32452	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9907697	3L_9907697_SNP [dm3] 3L_9914597_SNP [dm6]	A	G	2.134e^-4	0.881	INTRON CG34356
X	3224786	X_3224786_SNP [dm3] X_3330753_SNP [dm6]	C	T	2.146e^-4	0.881	INTRON CR44886 & 1 other
3R	7150373	3R_7150373_SNP [dm3] 3R_11324651_SNP [dm6]	T	G	2.149e^-4	0.881	INTERGENIC
3R	15831699	3R_15831699_SNP [dm3] 3R_20005977_SNP [dm6]	C	T	2.150e^-4	0.881	INTRON Hs6st	TF binding site mE1_TFBS_cad
2L	4250784	2L_4250784_SNP [dm3] 2L_4250784_SNP [dm6]	G	T	2.158e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_inv
3R	16940343	3R_16940343_SNP [dm3] 3R_21114621_SNP [dm6]	A	G	2.162e^-4	0.881	INTRON Rab11
3L	12152110	3L_12152110_SNP [dm3] 3L_12159010_SNP [dm6]	A	G	2.172e^-4	0.881	INTRON CG9760
X	15525154	X_15525154_SNP [dm3] X_15631121_SNP [dm6]	T	A	2.173e^-4	0.881	INTRON sog	TF binding site BDTNP1_TFBS_dl
2R	3022745	2R_3022745_DEL [dm3] 2R_7135240_DEL [dm6]	AA	A	2.175e^-4	0.881	DOWNSTREAM CR44443 INTERGENIC
3R	1904071	3R_1904071_SNP [dm3] 3R_6078349_SNP [dm6]	G	A	2.176e^-4	0.881	UPSTREAM Or83c INTERGENIC
3L	4874212	3L_4874212_SNP [dm3] 3L_4874212_SNP [dm6]	T	C	2.180e^-4	0.881	INTRON CG17150
3R	23357892	3R_23357892_SNP [dm3] 3R_27532170_SNP [dm6]	T	C	2.185e^-4	0.881	NON_SYNONYMOUS_CODING CG12885	TF binding site mE1_TFBS_chinmo
3R	8108891	3R_8108891_SNP [dm3] 3R_12283169_SNP [dm6]	A	G	2.195e^-4	0.881	INTRON svp
3R	2617072	3R_2617072_SNP [dm3] 3R_6791350_SNP [dm6]	T	A	2.206e^-4	0.881	UPSTREAM Dfd INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19880052	3R_19880052_SNP [dm3] 3R_24054330_SNP [dm6]	A	G	2.209e^-4	0.881	UPSTREAM CG6000 & 1 other DOWNSTREAM CG5991 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9778368	2R_9778368_SNP [dm3] 2R_13890863_SNP [dm6]	C	T	2.216e^-4	0.881	SYNONYMOUS_CODING shot INTRON shot
3R	9999293	3R_9999293_SNP [dm3] 3R_14173571_SNP [dm6]	C	T	2.217e^-4	0.881	UTR_3_PRIME Dop1R1
X	6829555	X_6829555_SNP [dm3] X_6935522_SNP [dm6]	C	T	2.218e^-4	0.881	INTRON CG14431
2L	1946363	2L_1946363_SNP [dm3] 2L_1946363_SNP [dm6]	G	A	2.221e^-4	0.881	SYNONYMOUS_CODING CG33673 UPSTREAM CG15357	regulatory region REDfly_CRMs
3R	2631703	3R_2631703_SNP [dm3] 3R_6805981_SNP [dm6]	A	T	2.227e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2374685	2L_2374685_SNP [dm3] 2L_2374685_SNP [dm6]	C	T	2.229e^-4	0.881	UPSTREAM CG15390 & 1 other DOWNSTREAM CR44982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_ttk mE1_TFBS_Ubx
3L	19179543	3L_19179543_DEL [dm3] 3L_19186443_DEL [dm6]	CCAGTTAGTCACGTGTGCCG...	C	2.236e^-4	0.881	INTRON fz2
2R	17206187	2R_17206187_SNP [dm3] 2R_21318682_SNP [dm6]	C	T	2.238e^-4	0.881	SYNONYMOUS_CODING CG9485 UTR_3_PRIME CG33655	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12246796	2L_12246796_SNP [dm3] 2L_12246796_SNP [dm6]	A	G	2.247e^-4	0.881	INTRON aret
2L	1925576	2L_1925576_SNP [dm3] 2L_1925576_SNP [dm6]	A	G	2.255e^-4	0.881	INTRON CG7337
2R	3082467	2R_3082467_SNP [dm3] 2R_7194962_SNP [dm6]	C	T	2.271e^-4	0.881	INTRON pk
X	7886212	X_7886212_SNP [dm3] X_7992179_SNP [dm6]	G	A	2.274e^-4	0.881	INTERGENIC
3L	11353950	3L_11353950_SNP [dm3] 3L_11360850_SNP [dm6]	G	C	2.277e^-4	0.881	INTERGENIC
3R	4986473	3R_4986473_SNP [dm3] 3R_9160751_SNP [dm6]	G	A	2.279e^-4	0.881	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16362516	2R_16362516_SNP [dm3] 2R_20475011_SNP [dm6]	A	T	2.281e^-4	0.881	INTRON CG12484
3L	5010877	3L_5010877_SNP [dm3] 3L_5010877_SNP [dm6]	C	G	2.282e^-4	0.881	DOWNSTREAM CG12027 INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11188350	2L_11188350_SNP [dm3] 2L_11188350_SNP [dm6]	G	C	2.292e^-4	0.881	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19078569	3R_19078569_SNP [dm3] 3R_23252847_SNP [dm6]	C	A	2.293e^-4	0.881	INTRON EloA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	21987437	3R_21987437_SNP [dm3] 3R_26161715_SNP [dm6]	G	C	2.314e^-4	0.881	INTERGENIC
3L	16175496	3L_16175496_SNP [dm3] 3L_16182396_SNP [dm6]	G	T	2.320e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19076420	3R_19076420_SNP [dm3] 3R_23250698_SNP [dm6]	T	C	2.323e^-4	0.881	NON_SYNONYMOUS_CODING CG4449 UPSTREAM EloA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
X	7784295	X_7784295_INS [dm3] X_7890262_INS [dm6]	T	TTTTTAAGGCTTTCCT...	2.329e^-4	0.881	CODON_INSERTION Nek2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
2R	9742692	2R_9742692_SNP [dm3] 2R_13855187_SNP [dm6]	G	T	2.341e^-4	0.881	NON_SYNONYMOUS_CODING CG6553 UPSTREAM CG6543 DOWNSTREAM tum EXON CR44367
2L	1851680	2L_1851680_SNP [dm3] 2L_1851680_SNP [dm6]	T	C	2.352e^-4	0.881	INTRON wry
2R	5017383	2R_5017383_SNP [dm3] 2R_9129878_SNP [dm6]	A	G	2.357e^-4	0.881	INTRON CG18659
3L	7809617	3L_7809617_SNP [dm3] 3L_7816517_SNP [dm6]	C	T	2.366e^-4	0.881	SYNONYMOUS_CODING Pdp1
3L	12037271	3L_12037271_SNP [dm3] 3L_12044171_SNP [dm6]	G	A	2.367e^-4	0.881	UTR_3_PRIME CG6793 UPSTREAM CG43638 INTRON rols
3R	19222879	3R_19222879_SNP [dm3] 3R_23397157_SNP [dm6]	A	G	2.371e^-4	0.881	INTERGENIC
3L	8835006	3L_8835006_DEL [dm3] 3L_8841906_DEL [dm6]	CCACTAC	C	2.376e^-4	0.881	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12022393	2R_12022393_SNP [dm3] 2R_16134888_SNP [dm6]	C	T	2.385e^-4	0.881	INTRON spin
3L	293666	3L_293666_SNP [dm3] 3L_293666_SNP [dm6]	T	C	2.389e^-4	0.881	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7808515	3L_7808515_SNP [dm3] 3L_7815415_SNP [dm6]	C	T	2.393e^-4	0.881	UTR_3_PRIME Pdp1
3L	14004076	3L_14004076_SNP [dm3] 3L_14010976_SNP [dm6]	A	T	2.394e^-4	0.881	INTRON upSET	TF binding site mE1_TFBS_cad
3L	22556712	3L_22556712_SNP [dm3] 3L_22563612_SNP [dm6]	G	C	2.410e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22604628	3L_22604628_SNP [dm3] 3L_22611528_SNP [dm6]	G	A	2.410e^-4	0.881	INTRON CG14459
3L	22624695	3L_22624695_SNP [dm3] 3L_22631595_SNP [dm6]	G	A	2.410e^-4	0.881	INTRON CG14459
3R	25157860	3R_25157860_SNP [dm3] 3R_29332138_SNP [dm6]	T	A	2.415e^-4	0.881	INTERGENIC
3L	3327198	3L_3327198_SNP [dm3] 3L_3327198_SNP [dm6]	C	T	2.417e^-4	0.881	INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc
X	22250035	X_22250035_SNP [dm3] X_22848199_SNP [dm6]	C	T	2.434e^-4	0.881	INTRON fog & 1 other
3R	26322673	3R_26322673_SNP [dm3] 3R_30496951_SNP [dm6]	G	T	2.435e^-4	0.881	UPSTREAM PH4alphaMP INTRON PH4alphaNE1	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	904465	X_904465_SNP [dm3] X_1010432_SNP [dm6]	G	A	2.439e^-4	0.881	DOWNSTREAM TfIIA-S-2 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
X	17804967	X_17804967_SNP [dm3] X_17910934_SNP [dm6]	C	T	2.443e^-4	0.881	UTR_3_PRIME Vps4 UPSTREAM CG6847 DOWNSTREAM Vps4	TF binding site BDTNP1_TFBS_dl
2L	3747414	2L_3747414_SNP [dm3] 2L_3747414_SNP [dm6]	C	T	2.448e^-4	0.881	INTRON CG10019
2R	17025645	2R_17025645_SNP [dm3] 2R_21138140_SNP [dm6]	C	A	2.448e^-4	0.881	INTRON Magi	TF binding site mE1_TFBS_chinmo
3R	19248992	3R_19248992_SNP [dm3] 3R_23423270_SNP [dm6]	C	T	2.450e^-4	0.881	INTRON CG4374	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	12176698	2L_12176698_SNP [dm3] 2L_12176698_SNP [dm6]	T	C	2.458e^-4	0.881	INTRON aret & 1 other
3R	3076540	3R_3076540_DEL [dm3] 3R_7250818_DEL [dm6]	CGAGATGTGACC...	C	2.468e^-4	0.881	UTR_3_PRIME CG10050 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2631004	3R_2631004_DEL [dm3] 3R_6805282_DEL [dm6]	ATA	A	2.470e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	5621175	X_5621175_SNP [dm3] X_5727142_SNP [dm6]	G	A	2.486e^-4	0.881	INTRON CG32758
3L	2957382	3L_2957382_SNP [dm3] 3L_2957382_SNP [dm6]	C	T	2.488e^-4	0.881	NON_SYNONYMOUS_CODING Shab UTR_3_PRIME Shab
X	9961744	X_9961744_SNP [dm3] X_10067711_SNP [dm6]	T	G	2.494e^-4	0.881	INTRON CG15312	TF binding site mE1_TFBS_inv
3R	25396630	3R_25396630_SNP [dm3] 3R_29570908_SNP [dm6]	A	G	2.497e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	19414239	3R_19414239_SNP [dm3] 3R_23588517_SNP [dm6]	C	T	2.498e^-4	0.881	SPLICE_SITE_REGION CG10182 INTRON CG10182
2L	19743827	2L_19743827_SNP [dm3] 2L_19743827_SNP [dm6]	G	A	2.513e^-4	0.881	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4980839	3L_4980839_INS [dm3] 3L_4980839_INS [dm6]	T	TAATGTAGTTACAAAT...	2.524e^-4	0.881	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
3R	2690763	3R_2690763_SNP [dm3] 3R_6865041_SNP [dm6]	C	G	2.526e^-4	0.881	SYNONYMOUS_CODING ftz	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19456374	3L_19456374_SNP [dm3] 3L_19463274_SNP [dm6]	A	G	2.528e^-4	0.881	DOWNSTREAM CG14095 INTERGENIC
3L	22720993	3L_22720993_SNP [dm3] 3L_22727893_SNP [dm6]	G	A	2.537e^-4	0.881	UPSTREAM CG11367 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16926931	3R_16926931_SNP [dm3] 3R_21101209_SNP [dm6]	A	C	2.541e^-4	0.881	SYNONYMOUS_CODING CG7044 UPSTREAM CG5745	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14625923	2R_14625923_SNP [dm3] 2R_18738418_SNP [dm6]	C	T	2.545e^-4	0.881	UPSTREAM CG33998 DOWNSTREAM CR30121 INTRON Hs3st-A
2R	5720272	2R_5720272_SNP [dm3] 2R_9832767_SNP [dm6]	A	T	2.558e^-4	0.881	INTRON hebe
2R	16362545	2R_16362545_SNP [dm3] 2R_20475040_SNP [dm6]	T	A	2.564e^-4	0.881	INTRON CG12484
3R	2600499	3R_2600499_SNP [dm3] 3R_6774777_SNP [dm6]	A	G	2.565e^-4	0.881	INTRON CR42721	TF binding site mE1_TFBS_cad
3R	3055847	3R_3055847_DEL [dm3] 3R_7230125_DEL [dm6]	GAAGATAATA	CG	2.565e^-4	0.881	INTRON CG14608
3R	19880067	3R_19880067_SNP [dm3] 3R_24054345_SNP [dm6]	A	G	2.566e^-4	0.881	UPSTREAM CG6000 & 1 other DOWNSTREAM CG5991 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25933700	3R_25933700_SNP [dm3] 3R_30107978_SNP [dm6]	A	C	2.567e^-4	0.881	INTRON sima
3L	22717461	3L_22717461_DEL [dm3] 3L_22724361_DEL [dm6]	TGAGAGAAGCCAG...	T	2.568e^-4	0.881	UTR_5_PRIME mael	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	7278663	X_7278663_SNP [dm3] X_7384630_SNP [dm6]	C	A	2.570e^-4	0.881	INTRON CG1677 & 1 other
3R	25130171	3R_25130171_SNP [dm3] 3R_29304449_SNP [dm6]	A	G	2.575e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5720363	2R_5720363_SNP [dm3] 2R_9832858_SNP [dm6]	G	A	2.585e^-4	0.881	INTRON hebe
3R	26152283	3R_26152283_SNP [dm3] 3R_30326561_SNP [dm6]	G	A	2.588e^-4	0.881	INTRON hdc
X	5366948	X_5366948_SNP [dm3] X_5472915_SNP [dm6]	A	T	2.596e^-4	0.881	INTRON SPR
2L	20648665	2L_20648665_SNP [dm3] 2L_20648665_SNP [dm6]	A	G	2.598e^-4	0.881	UPSTREAM CG18810 DOWNSTREAM snoRNA:Me28S-C2645a & 2 others INTRON Uhg3
2R	17205839	2R_17205839_SNP [dm3] 2R_21318334_SNP [dm6]	G	A	2.598e^-4	0.881	SYNONYMOUS_CODING CG9485 UTR_3_PRIME CG33655
3R	2599737	3R_2599737_SNP [dm3] 3R_6774015_SNP [dm6]	C	T	2.613e^-4	0.881	INTRON CR42721	TF binding site mE1_TFBS_cad
X	18287138	X_18287138_SNP [dm3] X_18393105_SNP [dm6]	A	T	2.618e^-4	0.881	INTRON CG32549
2R	13360483	2R_13360483_SNP [dm3] 2R_17472978_SNP [dm6]	C	A	2.618e^-4	0.881	INTRON qkr54B
2R	2117463	2R_2117463_SNP [dm3] 2R_6229958_SNP [dm6]	C	T	2.620e^-4	0.881	INTRON bin3
3R	25272425	3R_25272425_SNP [dm3] 3R_29446703_SNP [dm6]	G	A	2.625e^-4	0.881	INTRON Ptp99A
X	19414407	X_19414407_DEL [dm3] X_19520374_DEL [dm6]	TCGTCTTCTCCG...	T	2.626e^-4	0.881	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19414420	X_19414420_SNP [dm3] X_19520387_SNP [dm6]	C	A	2.626e^-4	0.881	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19414424	X_19414424_MNP [dm3] X_19520391_MNP [dm6]	TGTAT	GTCGC	2.626e^-4	0.881	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19414448	X_19414448_DEL [dm3] X_19520415_DEL [dm6]	TAACAGAGCAAATTAATATT...	T	2.626e^-4	0.881	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19414547	X_19414547_SNP [dm3] X_19520514_SNP [dm6]	C	T	2.626e^-4	0.881	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19419416	3R_19419416_SNP [dm3] 3R_23593694_SNP [dm6]	C	G	2.637e^-4	0.881	NON_SYNONYMOUS_CODING CG16723 UPSTREAM CG33337
3R	21997591	3R_21997591_SNP [dm3] 3R_26171869_SNP [dm6]	C	T	2.642e^-4	0.881	INTRON CG31323
2R	13834449	2R_13834449_SNP [dm3] 2R_17946944_SNP [dm6]	A	G	2.644e^-4	0.881	INTERGENIC
2L	14609719	2L_14609719_SNP [dm3] 2L_14609719_SNP [dm6]	T	C	2.646e^-4	0.881	INTRON osp
3L	11114754	3L_11114754_SNP [dm3] 3L_11121654_SNP [dm6]	C	T	2.646e^-4	0.881	SYNONYMOUS_CODING mRpL2 UPSTREAM fd68A DOWNSTREAM Ufd1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14609229	2L_14609229_SNP [dm3] 2L_14609229_SNP [dm6]	T	C	2.650e^-4	0.881	INTRON osp
X	12404284	X_12404284_SNP [dm3] X_12510251_SNP [dm6]	A	G	2.650e^-4	0.881	INTRON CG2556
X	12404286	X_12404286_SNP [dm3] X_12510253_SNP [dm6]	G	A	2.650e^-4	0.881	INTRON CG2556
3L	6627545	3L_6627545_SNP [dm3] 3L_6634445_SNP [dm6]	C	T	2.651e^-4	0.881	SYNONYMOUS_CODING GluRIA
2L	3747475	2L_3747475_SNP [dm3] 2L_3747475_SNP [dm6]	T	G	2.657e^-4	0.881	INTRON CG10019
3R	21497431	3R_21497431_SNP [dm3] 3R_25671709_SNP [dm6]	T	A	2.657e^-4	0.881	INTRON Lgr3
2R	8425861	2R_8425861_SNP [dm3] 2R_12538356_SNP [dm6]	T	C	2.665e^-4	0.881	INTRON fra	TF binding site mE1_TFBS_cad
2R	13832774	2R_13832774_SNP [dm3] 2R_17945269_SNP [dm6]	T	C	2.675e^-4	0.881	INTERGENIC
3R	2602591	3R_2602591_SNP [dm3] 3R_6776869_SNP [dm6]	A	G	2.685e^-4	0.881	DOWNSTREAM mir-993 INTRON CR42721 EXON CR42721
3R	2606278	3R_2606278_SNP [dm3] 3R_6780556_SNP [dm6]	C	T	2.685e^-4	0.881	DOWNSTREAM CR42721 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3R	2598735	3R_2598735_SNP [dm3] 3R_6773013_SNP [dm6]	T	A	2.686e^-4	0.881	INTRON CR42721
2R	15048230	2R_15048230_SNP [dm3] 2R_19160725_SNP [dm6]	A	G	2.701e^-4	0.881	SYNONYMOUS_CODING ena
3R	23023019	3R_23023019_MNP [dm3] 3R_27197297_MNP [dm6]	CTC	ACA	2.704e^-4	0.881	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	24389568	3R_24389568_SNP [dm3] 3R_28563846_SNP [dm6]	G	T	2.717e^-4	0.881	INTERGENIC
3R	19074938	3R_19074938_SNP [dm3] 3R_23249216_SNP [dm6]	A	G	2.727e^-4	0.881	UPSTREAM CG4467 DOWNSTREAM CG4449 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	19413870	X_19413870_SNP [dm3] X_19519837_SNP [dm6]	A	G	2.730e^-4	0.881	SPLICE_SITE_REGION l_1_G0156 INTRON l_1_G0156	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19414406	X_19414406_SNP [dm3] X_19520373_SNP [dm6]	G	A	2.734e^-4	0.881	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	17188632	2L_17188632_SNP [dm3] 2L_17188632_SNP [dm6]	G	T	2.735e^-4	0.881	UTR_3_PRIME beat-IIIc
X	6493864	X_6493864_SNP [dm3] X_6599831_SNP [dm6]	C	A	2.736e^-4	0.881	UPSTREAM pigs DOWNSTREAM APC7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2374799	2L_2374799_SNP [dm3] 2L_2374799_SNP [dm6]	A	T	2.738e^-4	0.881	NON_SYNONYMOUS_CODING CG15390 UPSTREAM CG3609 DOWNSTREAM CR44982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	10210715	X_10210715_SNP [dm3] X_10316682_SNP [dm6]	G	A	2.742e^-4	0.881	INTRON alpha-Man-I
3R	19353158	3R_19353158_SNP [dm3] 3R_23527436_SNP [dm6]	T	C	2.742e^-4	0.881	UPSTREAM CG10175 INTRON CG10175
2L	1551591	2L_1551591_SNP [dm3] 2L_1551591_SNP [dm6]	C	T	2.746e^-4	0.881	INTERGENIC
3R	25519991	3R_25519991_SNP [dm3] 3R_29694269_SNP [dm6]	G	A	2.748e^-4	0.881	INTRON dmrt99B
X	22250023	X_22250023_SNP [dm3] X_22848187_SNP [dm6]	A	G	2.748e^-4	0.881	INTRON fog & 1 other
2L	12651165	2L_12651165_SNP [dm3] 2L_12651165_SNP [dm6]	C	T	2.765e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14009340	3L_14009340_SNP [dm3] 3L_14016240_SNP [dm6]	G	A	2.782e^-4	0.881	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11475300	2L_11475300_SNP [dm3] 2L_11475300_SNP [dm6]	A	T	2.786e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk
2L	2331833	2L_2331833_SNP [dm3] 2L_2331833_SNP [dm6]	T	C	2.792e^-4	0.881	INTRON CG9967 & 1 other
3R	2932749	3R_2932749_SNP [dm3] 3R_7107027_SNP [dm6]	C	G	2.792e^-4	0.881	INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	15021066	2R_15021066_SNP [dm3] 2R_19133561_SNP [dm6]	A	C	2.800e^-4	0.881	UTR_3_PRIME botv DOWNSTREAM CG15118
2R	956964	2R_956964_SNP [dm3] 2R_5069459_SNP [dm6]	C	T	2.816e^-4	0.881	INTRON TpnC41C	transposable element FlyBase
2L	2110932	2L_2110932_SNP [dm3] 2L_2110932_SNP [dm6]	T	C	2.820e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	3004574	3R_3004574_SNP [dm3] 3R_7178852_SNP [dm6]	G	C	2.829e^-4	0.881	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13648047	2R_13648047_INS [dm3] 2R_17760542_INS [dm6]	T	TT	2.839e^-4	0.881	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	8636612	2R_8636612_SNP [dm3] 2R_12749107_SNP [dm6]	A	G	2.849e^-4	0.881	SYNONYMOUS_CODING CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2742190	3R_2742190_SNP [dm3] 3R_6916468_SNP [dm6]	A	C	2.866e^-4	0.881	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	2592593	3R_2592593_DEL [dm3] 3R_6766871_DEL [dm6]	AAAAATGTTGTCGAACTTTT...	A	2.866e^-4	0.881	UPSTREAM CR42721 DOWNSTREAM CR44930 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	20291519	X_20291519_SNP [dm3] X_20420492_SNP [dm6]	A	G	2.869e^-4	0.881	SYNONYMOUS_CODING Obp19d DOWNSTREAM Pp4-19C	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3747474	2L_3747474_SNP [dm3] 2L_3747474_SNP [dm6]	G	A	2.871e^-4	0.881	INTRON CG10019
3R	2680814	3R_2680814_SNP [dm3] 3R_6855092_SNP [dm6]	G	A	2.891e^-4	0.881	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	22207811	3L_22207811_SNP [dm3] 3L_22214711_SNP [dm6]	A	T	2.901e^-4	0.881	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2110938	2L_2110938_SNP [dm3] 2L_2110938_SNP [dm6]	T	C	2.917e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	21712872	3R_21712872_SNP [dm3] 3R_25887150_SNP [dm6]	G	A	2.921e^-4	0.881	SYNONYMOUS_CODING SppL
2R	9068716	2R_9068716_SNP [dm3] 2R_13181211_SNP [dm6]	T	C	2.925e^-4	0.881	SYNONYMOUS_CODING seq UTR_5_PRIME CG17724 INTRON CG17724 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14611117	2L_14611117_SNP [dm3] 2L_14611117_SNP [dm6]	T	C	2.930e^-4	0.881	SYNONYMOUS_CODING osp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	25269686	3R_25269686_SNP [dm3] 3R_29443964_SNP [dm6]	G	C	2.931e^-4	0.881	INTRON Ptp99A
X	21891927	X_21891927_SNP [dm3] X_22490091_SNP [dm6]	C	T	2.937e^-4	0.881	INTRON l_1_G0196 & 1 other
2L	12176693	2L_12176693_SNP [dm3] 2L_12176693_SNP [dm6]	C	T	2.939e^-4	0.881	INTRON aret & 1 other
3R	19419404	3R_19419404_SNP [dm3] 3R_23593682_SNP [dm6]	G	T	2.940e^-4	0.881	SYNONYMOUS_CODING CG16723 UPSTREAM CG33337
3R	15764753	3R_15764753_SNP [dm3] 3R_19939031_SNP [dm6]	T	C	2.942e^-4	0.881	INTRON Hs6st
X	19414492	X_19414492_SNP [dm3] X_19520459_SNP [dm6]	T	A	2.944e^-4	0.881	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19071643	3R_19071643_SNP [dm3] 3R_23245921_SNP [dm6]	A	G	2.947e^-4	0.881	INTRON CG4467
3R	2613187	3R_2613187_SNP [dm3] 3R_6787465_SNP [dm6]	T	C	2.947e^-4	0.881	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	6203820	3L_6203820_SNP [dm3] 3L_6210720_SNP [dm6]	G	T	2.951e^-4	0.881	NON_SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10278792	3R_10278792_SNP [dm3] 3R_14453070_SNP [dm6]	C	T	2.952e^-4	0.881	INTRON cv-c	TF binding site mE1_TFBS_inv
3L	9017753	3L_9017753_SNP [dm3] 3L_9024653_SNP [dm6]	C	T	2.955e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2665588	3R_2665588_SNP [dm3] 3R_6839866_SNP [dm6]	C	T	2.955e^-4	0.881	INTRON Scr	regulatory region REDfly_CRMs
2R	16619988	2R_16619988_SNP [dm3] 2R_20732483_SNP [dm6]	A	C	2.957e^-4	0.881	INTRON dpr
2L	2374662	2L_2374662_SNP [dm3] 2L_2374662_SNP [dm6]	C	T	2.967e^-4	0.881	UPSTREAM CG15390 & 1 other DOWNSTREAM CR44982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_ttk mE1_TFBS_Ubx
3R	15749918	3R_15749918_SNP [dm3] 3R_19924196_SNP [dm6]	A	C	2.982e^-4	0.881	INTRON CG4462
3R	2593073	3R_2593073_SNP [dm3] 3R_6767351_SNP [dm6]	G	A	2.983e^-4	0.881	DOWNSTREAM CR44930 INTRON CR42721	TF binding site mE1_TFBS_cad
3L	3687338	3L_3687338_SNP [dm3] 3L_3687338_SNP [dm6]	T	G	2.984e^-4	0.881	INTERGENIC
X	3258922	X_3258922_INS [dm3] X_3364889_INS [dm6]	A	AAAA	2.988e^-4	0.881	INTERGENIC
3L	1598241	3L_1598241_SNP [dm3] 3L_1598241_SNP [dm6]	T	C	2.991e^-4	0.881	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10882007	3L_10882007_SNP [dm3] 3L_10888907_SNP [dm6]	A	T	2.992e^-4	0.881	INTERGENIC
3R	2600871	3R_2600871_SNP [dm3] 3R_6775149_SNP [dm6]	T	G	3.001e^-4	0.881	INTRON CR42721
2L	19737343	2L_19737343_SNP [dm3] 2L_19737343_SNP [dm6]	G	T	3.006e^-4	0.881	DOWNSTREAM Nf-YB INTERGENIC
3R	2744747	3R_2744747_SNP [dm3] 3R_6919025_SNP [dm6]	A	C	3.015e^-4	0.881	INTRON Antp	TF binding site BDTNP1_TFBS_twi
2L	2374670	2L_2374670_SNP [dm3] 2L_2374670_SNP [dm6]	C	A	3.017e^-4	0.881	UPSTREAM CG15390 & 1 other DOWNSTREAM CR44982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_ttk mE1_TFBS_Ubx
2L	2374485	2L_2374485_SNP [dm3] 2L_2374485_SNP [dm6]	T	G	3.022e^-4	0.881	UPSTREAM CG15390 & 1 other DOWNSTREAM CR44982 INTRON CG3609	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Ubx
3R	2665568	3R_2665568_SNP [dm3] 3R_6839846_SNP [dm6]	T	C	3.024e^-4	0.881	INTRON Scr	regulatory region REDfly_CRMs
3R	17658600	3R_17658600_SNP [dm3] 3R_21832878_SNP [dm6]	C	A	3.029e^-4	0.881	SYNONYMOUS_CODING Gr93a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4040523	2L_4040523_SNP [dm3] 2L_4040523_SNP [dm6]	A	G	3.036e^-4	0.881	INTRON ed
3R	8405408	3R_8405408_DEL [dm3] 3R_12579686_DEL [dm6]	CACCAACCCACTTCGCCCAG...	C	3.043e^-4	0.881	INTRON Octbeta2R	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15764699	3R_15764699_INS [dm3] 3R_19938977_INS [dm6]	T	TGCACT	3.049e^-4	0.881	INTRON Hs6st
3R	2603747	3R_2603747_SNP [dm3] 3R_6778025_SNP [dm6]	C	T	3.057e^-4	0.881	DOWNSTREAM CR43435 & 1 other INTRON CR42721
2L	10145762	2L_10145762_SNP [dm3] 2L_10145762_SNP [dm6]	A	T	3.059e^-4	0.881	UTR_5_PRIME CG4839 INTRON CG44153 & 1 other
3L	8084976	3L_8084976_SNP [dm3] 3L_8091876_SNP [dm6]	G	A	3.064e^-4	0.881	UPSTREAM CG7565 INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11101846	3L_11101846_INS [dm3] 3L_11108746_INS [dm6]	A	ACATA	3.070e^-4	0.881	UPSTREAM CG7638 DOWNSTREAM CG34012 & 1 other INTERGENIC
3R	2638304	3R_2638304_DEL [dm3] 3R_6812582_DEL [dm6]	CTGTT	C	3.077e^-4	0.881	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2638312	3R_2638312_SNP [dm3] 3R_6812590_SNP [dm6]	T	A	3.077e^-4	0.881	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21497540	3R_21497540_SNP [dm3] 3R_25671818_SNP [dm6]	C	T	3.087e^-4	0.881	SYNONYMOUS_CODING Lgr3
3R	21341491	3R_21341491_SNP [dm3] 3R_25515769_SNP [dm6]	T	C	3.091e^-4	0.881	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	19347346	3R_19347346_SNP [dm3] 3R_23521624_SNP [dm6]	T	G	3.095e^-4	0.881	UPSTREAM CG10177 DOWNSTREAM CG10175 INTERGENIC	TF binding site mE1_TFBS_cad
2R	18564999	2R_18564999_SNP [dm3] 2R_22677494_SNP [dm6]	C	T	3.101e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23287510	3R_23287510_SNP [dm3] 3R_27461788_SNP [dm6]	C	T	3.106e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	5151733	3R_5151733_SNP [dm3] 3R_9326011_SNP [dm6]	T	A	3.106e^-4	0.881	INTRON CG8861
X	10453171	X_10453171_SNP [dm3] X_10559138_SNP [dm6]	T	C	3.119e^-4	0.881	INTRON spri
3R	8384518	3R_8384518_SNP [dm3] 3R_12558796_SNP [dm6]	C	T	3.121e^-4	0.881	INTRON Octbeta2R
2L	20323895	2L_20323895_SNP [dm3] 2L_20323895_SNP [dm6]	C	A	3.122e^-4	0.881	INTRON spir	TF binding site BDTNP1_TFBS_twi
X	3926935	X_3926935_DEL [dm3] X_4032902_DEL [dm6]	TGT	T	3.123e^-4	0.881	INTERGENIC
2R	16930948	2R_16930948_SNP [dm3] 2R_21043443_SNP [dm6]	C	A	3.132e^-4	0.881	INTERGENIC
X	9961752	X_9961752_SNP [dm3] X_10067719_SNP [dm6]	G	C	3.133e^-4	0.881	INTRON CG15312	TF binding site mE1_TFBS_inv
3R	2600867	3R_2600867_INS [dm3] 3R_6775145_INS [dm6]	T	TGGG	3.133e^-4	0.881	INTRON CR42721
3R	19342930	3R_19342930_SNP [dm3] 3R_23517208_SNP [dm6]	A	T	3.137e^-4	0.881	INTRON Irk2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	2908169	3R_2908169_SNP [dm3] 3R_7082447_SNP [dm6]	C	T	3.143e^-4	0.881	DOWNSTREAM CG1091 INTRON Dpck	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	11076707	X_11076707_DEL [dm3] X_11182674_DEL [dm6]	AGGAGCGGCAGCCAA...	A	3.143e^-4	0.881	UPSTREAM CG15200 INTERGENIC
2L	16053304	2L_16053304_SNP [dm3] 2L_16053304_SNP [dm6]	A	T	3.143e^-4	0.881	INTRON beat-Ia
3R	19435026	3R_19435026_SNP [dm3] 3R_23609304_SNP [dm6]	C	A	3.144e^-4	0.881	INTRON CG31145
3L	7163907	3L_7163907_SNP [dm3] 3L_7170807_SNP [dm6]	C	T	3.146e^-4	0.881	UTR_3_PRIME Dscam2 INTRON Dscam2
X	19414447	X_19414447_SNP [dm3] X_19520414_SNP [dm6]	T	C	3.147e^-4	0.881	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14739279	X_14739279_SNP [dm3] X_14845246_SNP [dm6]	T	A	3.147e^-4	0.881	UPSTREAM CG12539 INTRON Flo2
X	19414422	X_19414422_SNP [dm3] X_19520389_SNP [dm6]	T	A	3.150e^-4	0.881	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19878788	X_19878788_SNP [dm3] X_19984755_SNP [dm6]	A	C	3.156e^-4	0.881	INTERGENIC
3L	4298175	3L_4298175_SNP [dm3] 3L_4298175_SNP [dm6]	C	A	3.178e^-4	0.881	INTRON dyl
3R	22903764	3R_22903764_SNP [dm3] 3R_27078042_SNP [dm6]	T	G	3.185e^-4	0.881	INTRON CG14257
3L	2500540	3L_2500540_SNP [dm3] 3L_2500540_SNP [dm6]	A	T	3.190e^-4	0.881	INTRON CG16758
3R	14115754	3R_14115754_SNP [dm3] 3R_18290032_SNP [dm6]	G	A	3.194e^-4	0.881	INTRON l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3808803	2L_3808803_SNP [dm3] 2L_3808803_SNP [dm6]	C	T	3.195e^-4	0.881	UTR_3_PRIME Reph
3L	16863336	3L_16863336_SNP [dm3] 3L_16870236_SNP [dm6]	G	C	3.197e^-4	0.881	INTRON Lmpt
3R	19591873	3R_19591873_SNP [dm3] 3R_23766151_SNP [dm6]	A	G	3.201e^-4	0.881	SYNONYMOUS_CODING Lsd-1 DOWNSTREAM CG10214
3R	3102348	3R_3102348_SNP [dm3] 3R_7276626_SNP [dm6]	A	T	3.206e^-4	0.881	INTRON rn
2R	10972524	2R_10972524_SNP [dm3] 2R_15085019_SNP [dm6]	G	C	3.209e^-4	0.881	INTERGENIC
2R	7127891	2R_7127891_SNP [dm3] 2R_11240386_SNP [dm6]	G	T	3.214e^-4	0.881	UPSTREAM CG13215 INTERGENIC
3R	19078562	3R_19078562_SNP [dm3] 3R_23252840_SNP [dm6]	T	A	3.215e^-4	0.881	SPLICE_SITE_REGION EloA INTRON EloA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3L	1411073	3L_1411073_SNP [dm3] 3L_1411073_SNP [dm6]	G	C	3.232e^-4	0.881	UPSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6650895	3L_6650895_SNP [dm3] 3L_6657795_SNP [dm6]	C	A	3.232e^-4	0.881	INTERGENIC
3R	25394975	3R_25394975_SNP [dm3] 3R_29569253_SNP [dm6]	C	T	3.233e^-4	0.881	INTERGENIC
3R	2593549	3R_2593549_SNP [dm3] 3R_6767827_SNP [dm6]	G	C	3.233e^-4	0.881	INTRON CR42721
3L	9017754	3L_9017754_SNP [dm3] 3L_9024654_SNP [dm6]	C	T	3.237e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16312542	2R_16312542_INS [dm3] 2R_20425037_INS [dm6]	T	TT	3.239e^-4	0.881	INTRON CG12484
X	14911513	X_14911513_SNP [dm3] X_15017480_SNP [dm6]	A	C	3.240e^-4	0.881	SYNONYMOUS_CODING hiw	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	13447403	3R_13447403_SNP [dm3] 3R_17621681_SNP [dm6]	G	A	3.242e^-4	0.881	SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3L	11860184	3L_11860184_SNP [dm3] 3L_11867084_SNP [dm6]	G	A	3.242e^-4	0.881	INTRON CG44837
3R	23429935	3R_23429935_SNP [dm3] 3R_27604213_SNP [dm6]	G	C	3.245e^-4	0.881	INTRON dsd
2R	12474512	2R_12474512_SNP [dm3] 2R_16587007_SNP [dm6]	G	A	3.249e^-4	0.881	DOWNSTREAM CG8311 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20298567	2L_20298567_SNP [dm3] 2L_20298567_SNP [dm6]	C	G	3.249e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_sens
3R	19182111	3R_19182111_SNP [dm3] 3R_23356389_SNP [dm6]	C	T	3.255e^-4	0.881	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14705933	2R_14705933_SNP [dm3] 2R_18818428_SNP [dm6]	C	T	3.255e^-4	0.881	INTERGENIC
3R	15122568	3R_15122568_SNP [dm3] 3R_19296846_SNP [dm6]	T	C	3.257e^-4	0.881	DOWNSTREAM CG44174 INTERGENIC
3L	7804610	3L_7804610_SNP [dm3] 3L_7811510_SNP [dm6]	A	G	3.258e^-4	0.881	UTR_3_PRIME Pdp1 DOWNSTREAM Pdp1
3R	2603288	3R_2603288_SNP [dm3] 3R_6777566_SNP [dm6]	C	T	3.263e^-4	0.881	DOWNSTREAM CR43435 & 1 other INTRON CR42721
2L	14470003	2L_14470003_SNP [dm3] 2L_14470003_SNP [dm6]	T	A	3.265e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1678978	2L_1678978_DEL [dm3] 2L_1678978_DEL [dm6]	TTAATTTGGGGAACCCATA...	T	3.267e^-4	0.881	INTRON chinmo
2R	17206508	2R_17206508_SNP [dm3] 2R_21319003_SNP [dm6]	G	A	3.275e^-4	0.881	SYNONYMOUS_CODING CG9485 UTR_3_PRIME CG33655
2L	1941991	2L_1941991_SNP [dm3] 2L_1941991_SNP [dm6]	T	C	3.289e^-4	0.881	SYNONYMOUS_CODING CG7337
3R	25518028	3R_25518028_SNP [dm3] 3R_29692306_SNP [dm6]	T	G	3.307e^-4	0.881	UPSTREAM dmrt99B INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1453613	2L_1453613_SNP [dm3] 2L_1453613_SNP [dm6]	C	T	3.309e^-4	0.881	INTERGENIC
X	9847626	X_9847626_SNP [dm3] X_9953593_SNP [dm6]	G	A	3.310e^-4	0.881	INTERGENIC
X	4176465	X_4176465_SNP [dm3] X_4282432_SNP [dm6]	G	A	3.321e^-4	0.881	INTERGENIC
3R	2013466	3R_2013466_SNP [dm3] 3R_6187744_SNP [dm6]	C	A	3.323e^-4	0.881	INTRON NPFR
X	12717098	X_12717098_SNP [dm3] X_12823065_SNP [dm6]	T	A	3.324e^-4	0.881	INTRON Pde9
2R	9554739	2R_9554739_SNP [dm3] 2R_13667234_SNP [dm6]	A	G	3.331e^-4	0.881	SYNONYMOUS_CODING CG13337 UPSTREAM CG18368 INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9961716	X_9961716_SNP [dm3] X_10067683_SNP [dm6]	A	G	3.345e^-4	0.881	INTRON CG15312	TF binding site mE1_TFBS_inv
3R	24498190	3R_24498190_SNP [dm3] 3R_28672468_SNP [dm6]	G	A	3.350e^-4	0.881	DOWNSTREAM CG9989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	9440907	X_9440907_SNP [dm3] X_9546874_SNP [dm6]	C	G	3.351e^-4	0.881	INTRON CG32700
2R	8636349	2R_8636349_SNP [dm3] 2R_12748844_SNP [dm6]	T	A	3.364e^-4	0.881	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6560460	2R_6560460_SNP [dm3] 2R_10672955_SNP [dm6]	C	T	3.365e^-4	0.881	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12544676	2R_12544676_SNP [dm3] 2R_16657171_SNP [dm6]	G	A	3.369e^-4	0.881	SYNONYMOUS_CODING Picot
3R	20598591	3R_20598591_SNP [dm3] 3R_24772869_SNP [dm6]	T	C	3.371e^-4	0.881	INTRON CG42331
2R	20441334	2R_20441334_SNP [dm3] 2R_24553811_SNP [dm6]	T	G	3.379e^-4	0.881	INTRON CG4622 & 1 other
3R	2600118	3R_2600118_SNP [dm3] 3R_6774396_SNP [dm6]	C	T	3.381e^-4	0.881	INTRON CR42721	TF binding site mE1_TFBS_cad
2L	1938180	2L_1938180_SNP [dm3] 2L_1938180_SNP [dm6]	A	G	3.383e^-4	0.881	UPSTREAM tRNA:G3:22BCa INTRON CG7337	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	21040987	3R_21040987_SNP [dm3] 3R_25215265_SNP [dm6]	G	C	3.393e^-4	0.881	UPSTREAM CG13663 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	19414482	X_19414482_SNP [dm3] X_19520449_SNP [dm6]	C	A	3.398e^-4	0.881	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12246741	2L_12246741_SNP [dm3] 2L_12246741_SNP [dm6]	T	C	3.406e^-4	0.881	INTRON aret
3L	5088269	3L_5088269_SNP [dm3] 3L_5088269_SNP [dm6]	T	A	3.407e^-4	0.881	INTERGENIC
3R	19414394	3R_19414394_SNP [dm3] 3R_23588672_SNP [dm6]	A	T	3.417e^-4	0.881	INTRON CG10182
3R	24500283	3R_24500283_DEL [dm3] 3R_28674561_DEL [dm6]	TGGAATAGAT	T	3.418e^-4	0.881	UPSTREAM CG9990 INTERGENIC
3R	2593472	3R_2593472_SNP [dm3] 3R_6767750_SNP [dm6]	T	C	3.428e^-4	0.881	INTRON CR42721
3L	14205991	3L_14205991_SNP [dm3] 3L_14212891_SNP [dm6]	G	T	3.434e^-4	0.881	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13939475	3R_13939475_SNP [dm3] 3R_18113753_SNP [dm6]	A	T	3.434e^-4	0.881	INTRON sr
2R	5727533	2R_5727533_SNP [dm3] 2R_9840028_SNP [dm6]	G	A	3.438e^-4	0.881	NON_SYNONYMOUS_CODING CG1665 UPSTREAM Lsm11	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_sens
3R	20125128	3R_20125128_SNP [dm3] 3R_24299406_SNP [dm6]	A	C	3.439e^-4	0.881	INTRON crb	TF binding site BDTNP1_TFBS_dl
2R	13028321	2R_13028321_SNP [dm3] 2R_17140816_SNP [dm6]	G	A	3.444e^-4	0.881	SYNONYMOUS_CODING CG43107 UPSTREAM CG43103 EXON CR44386
3R	23954105	3R_23954105_SNP [dm3] 3R_28128383_SNP [dm6]	C	G	3.450e^-4	0.881	INTERGENIC
3R	26890001	3R_26890001_SNP [dm3] 3R_31064279_SNP [dm6]	A	G	3.450e^-4	0.881	UPSTREAM Sox100B INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14471296	2L_14471296_INS [dm3] 2L_14471296_INS [dm6]	A	AT	3.451e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2382477	2L_2382477_SNP [dm3] 2L_2382477_SNP [dm6]	C	T	3.461e^-4	0.881	SYNONYMOUS_CODING Eogt UPSTREAM CG9870	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3127808	3L_3127808_SNP [dm3] 3L_3127808_SNP [dm6]	C	A	3.465e^-4	0.881	UPSTREAM prominin-like DOWNSTREAM CG11537 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	4223161	3R_4223161_SNP [dm3] 3R_8397439_SNP [dm6]	C	T	3.468e^-4	0.881	INTRON CG45263
3R	25973904	3R_25973904_SNP [dm3] 3R_30148182_SNP [dm6]	T	C	3.482e^-4	0.881	INTRON AdoR
3R	25594994	3R_25594994_SNP [dm3] 3R_29769272_SNP [dm6]	C	T	3.485e^-4	0.881	INTRON kay
2L	6720953	2L_6720953_SNP [dm3] 2L_6720953_SNP [dm6]	C	T	3.495e^-4	0.881	INTRON homer
X	6108558	X_6108558_SNP [dm3] X_6214525_SNP [dm6]	A	G	3.496e^-4	0.881	INTERGENIC
X	21374269	X_21374269_SNP [dm3] X_21503242_SNP [dm6]	A	T	3.499e^-4	0.881	INTRON CR45082
2L	14609701	2L_14609701_SNP [dm3] 2L_14609701_SNP [dm6]	C	A	3.520e^-4	0.881	INTRON osp
3R	2636802	3R_2636802_SNP [dm3] 3R_6811080_SNP [dm6]	G	A	3.523e^-4	0.881	INTRON CR42651	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	20319520	3R_20319520_SNP [dm3] 3R_24493798_SNP [dm6]	T	C	3.531e^-4	0.881	INTERGENIC
2R	13648030	2R_13648030_SNP [dm3] 2R_17760525_SNP [dm6]	G	A	3.531e^-4	0.881	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11856640	3L_11856640_SNP [dm3] 3L_11863540_SNP [dm6]	C	T	3.532e^-4	0.881	UPSTREAM CG44837 INTRON CG44837
3R	10278793	3R_10278793_SNP [dm3] 3R_14453071_SNP [dm6]	T	C	3.532e^-4	0.881	INTRON cv-c	TF binding site mE1_TFBS_inv
2L	4838593	2L_4838593_SNP [dm3] 2L_4838593_SNP [dm6]	C	G	3.535e^-4	0.881	UPSTREAM tank INTRON CG12194	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	19050983	X_19050983_SNP [dm3] X_19156950_SNP [dm6]	C	G	3.535e^-4	0.881	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
3L	20283869	3L_20283869_SNP [dm3] 3L_20290769_SNP [dm6]	T	C	3.538e^-4	0.881	INTRON gogo EXON CR43890
2R	7139156	2R_7139156_SNP [dm3] 2R_11251651_SNP [dm6]	T	C	3.538e^-4	0.881	DOWNSTREAM Cpr47Ea INTRON Or47a
3L	1580489	3L_1580489_SNP [dm3] 3L_1580489_SNP [dm6]	G	A	3.540e^-4	0.881	INTRON CG13917
3L	22256581	3L_22256581_SNP [dm3] 3L_22263481_SNP [dm6]	A	C	3.540e^-4	0.881	UTR_5_PRIME Ddx1 UPSTREAM Rich	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11274005	3L_11274005_SNP [dm3] 3L_11280905_SNP [dm6]	T	G	3.546e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3732523	3L_3732523_SNP [dm3] 3L_3732523_SNP [dm6]	A	T	3.546e^-4	0.881	INTRON CG32264
3R	2638291	3R_2638291_DEL [dm3] 3R_6812569_DEL [dm6]	GTGCCAAGTGTC...	G	3.547e^-4	0.881	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6261364	X_6261364_SNP [dm3] X_6367331_SNP [dm6]	G	A	3.552e^-4	0.881	INTRON Marf
X	12404295	X_12404295_SNP [dm3] X_12510262_SNP [dm6]	C	T	3.552e^-4	0.881	INTRON CG2556
3L	22112539	3L_22112539_SNP [dm3] 3L_22119439_SNP [dm6]	A	T	3.556e^-4	0.881	INTERGENIC
X	12404303	X_12404303_SNP [dm3] X_12510270_SNP [dm6]	G	T	3.561e^-4	0.881	INTRON CG2556
3R	1901027	3R_1901027_INS [dm3] 3R_6075305_INS [dm6]	T	TACATCCGGC	3.563e^-4	0.881	INTERGENIC
3L	10356216	3L_10356216_SNP [dm3] 3L_10363116_SNP [dm6]	T	C	3.564e^-4	0.881	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18565004	2R_18565004_SNP [dm3] 2R_22677499_SNP [dm6]	C	G	3.565e^-4	0.881	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5720596	2R_5720596_SNP [dm3] 2R_9833091_SNP [dm6]	G	T	3.565e^-4	0.881	INTRON hebe
2R	13028300	2R_13028300_SNP [dm3] 2R_17140795_SNP [dm6]	A	C	3.576e^-4	0.881	SYNONYMOUS_CODING CG43107 UPSTREAM CG43103 EXON CR44386
3L	11829806	3L_11829806_SNP [dm3] 3L_11836706_SNP [dm6]	C	G	3.577e^-4	0.881	UTR_5_PRIME CG43064
X	8827181	X_8827181_SNP [dm3] X_8933148_SNP [dm6]	C	T	3.579e^-4	0.881	INTRON rdgA
X	19050931	X_19050931_SNP [dm3] X_19156898_SNP [dm6]	C	T	3.584e^-4	0.881	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
X	21891112	X_21891112_SNP [dm3] X_22489276_SNP [dm6]	G	T	3.586e^-4	0.881	INTRON l_1_G0196 EXON CR43493
2L	4829197	2L_4829197_SNP [dm3] 2L_4829197_SNP [dm6]	G	C	3.586e^-4	0.881	DOWNSTREAM CG2976 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20390184	2R_20390184_SNP [dm3] 2R_24502661_SNP [dm6]	A	G	3.588e^-4	0.881	UPSTREAM Prosalpha4T2 INTERGENIC
X	21891474	X_21891474_SNP [dm3] X_22489638_SNP [dm6]	A	G	3.594e^-4	0.881	INTRON l_1_G0196 EXON CR43493
3R	2636749	3R_2636749_SNP [dm3] 3R_6811027_SNP [dm6]	G	A	3.595e^-4	0.881	INTRON CR42651	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	23991936	3R_23991936_SNP [dm3] 3R_28166214_SNP [dm6]	T	A	3.614e^-4	0.882	INTRON CG34354
3L	437730	3L_437730_SNP [dm3] 3L_437730_SNP [dm6]	G	A	3.618e^-4	0.882	UTR_5_PRIME klar INTRON klar
3R	22038214	3R_22038214_SNP [dm3] 3R_26212492_SNP [dm6]	G	A	3.619e^-4	0.882	INTERGENIC
2R	17190805	2R_17190805_SNP [dm3] 2R_21303300_SNP [dm6]	T	A	3.620e^-4	0.882	INTRON CG42672
2L	13128510	2L_13128510_SNP [dm3] 2L_13128510_SNP [dm6]	A	T	3.622e^-4	0.882	INTERGENIC
2R	13028790	2R_13028790_SNP [dm3] 2R_17141285_SNP [dm6]	T	C	3.636e^-4	0.884	UPSTREAM CG43107 DOWNSTREAM CR44386 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	7748876	X_7748876_SNP [dm3] X_7854843_SNP [dm6]	C	A	3.651e^-4	0.886	UPSTREAM CG10920 INTERGENIC
2R	4481312	2R_4481312_SNP [dm3] 2R_8593807_SNP [dm6]	A	C	3.657e^-4	0.886	DOWNSTREAM CG43183 & 1 other INTERGENIC
3R	2593563	3R_2593563_DEL [dm3] 3R_6767841_DEL [dm6]	CT	C	3.668e^-4	0.886	INTRON CR42721
2L	16541814	2L_16541814_SNP [dm3] 2L_16541814_SNP [dm6]	G	T	3.674e^-4	0.886	UPSTREAM CG31816 INTERGENIC
3R	25577412	3R_25577412_SNP [dm3] 3R_29751690_SNP [dm6]	G	T	3.701e^-4	0.886	SPLICE_SITE_REGION yata INTRON yata	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2382601	2L_2382601_SNP [dm3] 2L_2382601_SNP [dm6]	T	A	3.712e^-4	0.886	UPSTREAM CG9870 INTRON Eogt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16771038	3R_16771038_SNP [dm3] 3R_20945316_SNP [dm6]	G	C	3.718e^-4	0.886	UTR_5_PRIME CG31191	TF binding site mE1_TFBS_cad
3R	19414264	3R_19414264_SNP [dm3] 3R_23588542_SNP [dm6]	C	T	3.719e^-4	0.886	SYNONYMOUS_CODING CG10182
3R	25551689	3R_25551689_SNP [dm3] 3R_29725967_SNP [dm6]	G	A	3.742e^-4	0.886	DOWNSTREAM CG18731 INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16751983	3R_16751983_SNP [dm3] 3R_20926261_SNP [dm6]	C	A	3.743e^-4	0.886	INTRON CG31191 & 1 other
3R	25408915	3R_25408915_SNP [dm3] 3R_29583193_SNP [dm6]	A	T	3.744e^-4	0.886	INTERGENIC
2R	6560470	2R_6560470_DEL [dm3] 2R_10672965_DEL [dm6]	AT	A	3.751e^-4	0.886	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12218248	3L_12218248_SNP [dm3] 3L_12225148_SNP [dm6]	C	T	3.760e^-4	0.886	UPSTREAM app INTRON app	TF binding site mE1_TFBS_inv
X	9961762	X_9961762_SNP [dm3] X_10067729_SNP [dm6]	A	T	3.760e^-4	0.886	INTRON CG15312	TF binding site mE1_TFBS_inv
3L	888449	3L_888449_SNP [dm3] 3L_888449_SNP [dm6]	C	A	3.761e^-4	0.886	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3R	24508009	3R_24508009_SNP [dm3] 3R_28682287_SNP [dm6]	G	A	3.763e^-4	0.886	UTR_5_PRIME CG9990 UPSTREAM CG9990 INTRON CG9990	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	21498920	3R_21498920_SNP [dm3] 3R_25673198_SNP [dm6]	G	C	3.776e^-4	0.886	INTRON Lgr3
3L	18916749	3L_18916749_SNP [dm3] 3L_18923649_SNP [dm6]	T	C	3.788e^-4	0.886	UTR_3_PRIME CG32204	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3557311	2R_3557311_SNP [dm3] 2R_7669806_SNP [dm6]	T	A	3.796e^-4	0.886	UPSTREAM CG12042 DOWNSTREAM CG12826 INTERGENIC
3R	19410638	3R_19410638_SNP [dm3] 3R_23584916_SNP [dm6]	T	A	3.808e^-4	0.886	INTERGENIC
3L	22517164	3L_22517164_SNP [dm3] 3L_22524064_SNP [dm6]	A	T	3.812e^-4	0.886	INTERGENIC
2L	13882361	2L_13882361_SNP [dm3] 2L_13882361_SNP [dm6]	T	C	3.831e^-4	0.886	INTRON CenG1A
3R	2850893	3R_2850893_SNP [dm3] 3R_7025171_SNP [dm6]	T	C	3.844e^-4	0.886	INTERGENIC
3L	9311337	3L_9311337_SNP [dm3] 3L_9318237_SNP [dm6]	C	T	3.846e^-4	0.886	INTERGENIC
3L	18977252	3L_18977252_SNP [dm3] 3L_18984152_SNP [dm6]	G	A	3.848e^-4	0.886	UPSTREAM CG14075 INTERGENIC
X	19414483	X_19414483_SNP [dm3] X_19520450_SNP [dm6]	A	C	3.849e^-4	0.886	INTRON l_1_G0156	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15525097	X_15525097_SNP [dm3] X_15631064_SNP [dm6]	G	T	3.851e^-4	0.886	INTRON sog	TF binding site BDTNP1_TFBS_dl
2L	14609543	2L_14609543_SNP [dm3] 2L_14609543_SNP [dm6]	G	T	3.855e^-4	0.886	INTRON osp
3R	2599367	3R_2599367_SNP [dm3] 3R_6773645_SNP [dm6]	G	T	3.857e^-4	0.886	INTRON CR42721	TF binding site mE1_TFBS_cad
2R	18564946	2R_18564946_SNP [dm3] 2R_22677441_SNP [dm6]	A	T	3.860e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16573336	2L_16573336_SNP [dm3] 2L_16573336_SNP [dm6]	A	C	3.863e^-4	0.886	INTRON CG42389
3L	13240010	3L_13240010_SNP [dm3] 3L_13246910_SNP [dm6]	G	A	3.864e^-4	0.886	UTR_3_PRIME CG32119 INTRON caps
2R	3140994	2R_3140994_SNP [dm3] 2R_7253489_SNP [dm6]	G	A	3.865e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	22034533	3R_22034533_SNP [dm3] 3R_26208811_SNP [dm6]	C	A	3.870e^-4	0.886	INTRON CR44320
3R	23023023	3R_23023023_SNP [dm3] 3R_27197301_SNP [dm6]	T	A	3.871e^-4	0.886	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	22499530	3L_22499530_SNP [dm3] 3L_22506430_SNP [dm6]	G	A	3.873e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2932750	3R_2932750_SNP [dm3] 3R_7107028_SNP [dm6]	A	G	3.874e^-4	0.886	INTRON Alh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	3747401	2L_3747401_SNP [dm3] 2L_3747401_SNP [dm6]	T	C	3.876e^-4	0.886	INTRON CG10019
3R	2645041	3R_2645041_SNP [dm3] 3R_6819319_SNP [dm6]	A	G	3.880e^-4	0.886	UPSTREAM tRNA:K5:84ABd DOWNSTREAM 7SLRNA:CR42652 EXON tRNA:CR31485:Psi	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20228024	X_20228024_SNP [dm3] X_20356997_SNP [dm6]	G	T	3.886e^-4	0.886	INTERGENIC
3L	14721923	3L_14721923_SNP [dm3] 3L_14728823_SNP [dm6]	G	T	3.892e^-4	0.886	UTR_5_PRIME CG13473 INTRON ome
3L	22376795	3L_22376795_SNP [dm3] 3L_22383695_SNP [dm6]	G	T	3.894e^-4	0.886	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi
3R	25573183	3R_25573183_SNP [dm3] 3R_29747461_SNP [dm6]	A	C	3.902e^-4	0.886	UTR_3_PRIME IntS11 DOWNSTREAM ATPsyn-gamma	TF binding site mE1_TFBS_cad
3R	24457568	3R_24457568_SNP [dm3] 3R_28631846_SNP [dm6]	A	G	3.903e^-4	0.886	INTRON CG10011	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	2199959	3L_2199959_SNP [dm3] 3L_2199959_SNP [dm6]	C	T	3.905e^-4	0.886	INTERGENIC
3L	16861255	3L_16861255_SNP [dm3] 3L_16868155_SNP [dm6]	G	C	3.909e^-4	0.886	INTRON Lmpt
3R	24051709	3R_24051709_SNP [dm3] 3R_28225987_SNP [dm6]	A	T	3.909e^-4	0.886	INTRON CG34354	TF binding site mE1_TFBS_HSA
3R	24051711	3R_24051711_MNP [dm3] 3R_28225989_MNP [dm6]	TGT	AAA	3.909e^-4	0.886	INTRON CG34354	TF binding site mE1_TFBS_HSA
3R	24051715	3R_24051715_DEL [dm3] 3R_28225993_DEL [dm6]	CTCCCC	AAG	3.909e^-4	0.886	INTRON CG34354	TF binding site mE1_TFBS_HSA
3L	9310689	3L_9310689_SNP [dm3] 3L_9317589_SNP [dm6]	G	A	3.914e^-4	0.886	INTERGENIC
3L	6112355	3L_6112355_SNP [dm3] 3L_6119255_SNP [dm6]	A	T	3.917e^-4	0.886	INTRON Ets65A
2L	20644062	2L_20644062_SNP [dm3] 2L_20644062_SNP [dm6]	T	C	3.920e^-4	0.886	SYNONYMOUS_CODING phr6-4 UPSTREAM CG17470	TF binding site mE1_TFBS_chinmo
3L	18971060	3L_18971060_SNP [dm3] 3L_18977960_SNP [dm6]	C	T	3.928e^-4	0.886	INTERGENIC
3R	24805361	3R_24805361_SNP [dm3] 3R_28979639_SNP [dm6]	G	C	3.934e^-4	0.886	INTERGENIC
2L	17366277	2L_17366277_SNP [dm3] 2L_17366277_SNP [dm6]	G	A	3.936e^-4	0.886	INTERGENIC
3R	2633968	3R_2633968_SNP [dm3] 3R_6808246_SNP [dm6]	C	A	3.938e^-4	0.886	DOWNSTREAM CR42651 INTERGENIC
3R	19182142	3R_19182142_SNP [dm3] 3R_23356420_SNP [dm6]	A	G	3.940e^-4	0.886	START_GAINED Sec13 UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1453514	2L_1453514_SNP [dm3] 2L_1453514_SNP [dm6]	C	T	3.941e^-4	0.886	INTERGENIC
2R	10691442	2R_10691442_SNP [dm3] 2R_14803937_SNP [dm6]	G	C	3.942e^-4	0.886	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10863926	3R_10863926_SNP [dm3] 3R_15038204_SNP [dm6]	T	C	3.943e^-4	0.886	UPSTREAM CR44944 DOWNSTREAM RpL10Aa INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2536998	X_2536998_INS [dm3] X_2642965_INS [dm6]	T	TTTGCCGCT	3.946e^-4	0.886	UTR_5_PRIME sgg UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20228046	X_20228046_SNP [dm3] X_20357019_SNP [dm6]	T	G	3.950e^-4	0.886	INTERGENIC
3R	23954628	3R_23954628_SNP [dm3] 3R_28128906_SNP [dm6]	C	T	3.952e^-4	0.886	INTERGENIC
3R	2013363	3R_2013363_SNP [dm3] 3R_6187641_SNP [dm6]	C	T	3.960e^-4	0.886	INTRON NPFR
X	14459726	X_14459726_SNP [dm3] X_14565693_SNP [dm6]	C	T	3.965e^-4	0.886	INTERGENIC
3L	7167009	3L_7167009_SNP [dm3] 3L_7173909_SNP [dm6]	T	A	3.967e^-4	0.886	DOWNSTREAM Dscam2 INTRON Dscam2
2R	19179384	2R_19179384_SNP [dm3] 2R_23291861_SNP [dm6]	C	T	3.970e^-4	0.886	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	22195276	3L_22195276_SNP [dm3] 3L_22202176_SNP [dm6]	C	G	3.978e^-4	0.886	INTRON olf413
2R	9756121	2R_9756121_SNP [dm3] 2R_13868616_SNP [dm6]	G	T	3.980e^-4	0.886	INTRON shot
2R	17203721	2R_17203721_SNP [dm3] 2R_21316216_SNP [dm6]	C	T	3.985e^-4	0.886	SYNONYMOUS_CODING CG9485	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10839741	3L_10839741_SNP [dm3] 3L_10846641_SNP [dm6]	C	T	3.988e^-4	0.886	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	26483415	3R_26483415_SNP [dm3] 3R_30657693_SNP [dm6]	A	C	3.989e^-4	0.886	INTERGENIC
3R	21009368	3R_21009368_SNP [dm3] 3R_25183646_SNP [dm6]	T	A	3.992e^-4	0.886	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	17206607	2R_17206607_SNP [dm3] 2R_21319102_SNP [dm6]	A	G	3.997e^-4	0.886	SYNONYMOUS_CODING CG9485 UTR_3_PRIME CG33655 DOWNSTREAM CG30394
3R	2688312	3R_2688312_SNP [dm3] 3R_6862590_SNP [dm6]	G	T	3.998e^-4	0.886	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20481988	2L_20481988_DEL [dm3] 2L_20481988_DEL [dm6]	ATTTTCCAATGTGACGAA...	A	4.015e^-4	0.887	INTRON CR44980	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5718316	2R_5718316_SNP [dm3] 2R_9830811_SNP [dm6]	C	T	4.016e^-4	0.887	INTRON hebe
2R	6462658	2R_6462658_SNP [dm3] 2R_10575153_SNP [dm6]	G	C	4.022e^-4	0.887	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	15229772	2L_15229772_SNP [dm3] 2L_15229772_SNP [dm6]	T	A	4.026e^-4	0.887	INTRON ZnT35C
3R	25973929	3R_25973929_SNP [dm3] 3R_30148207_SNP [dm6]	C	A	4.028e^-4	0.887	INTRON AdoR
3L	18290170	3L_18290170_SNP [dm3] 3L_18297070_SNP [dm6]	A	T	4.036e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	22159403	3L_22159403_SNP [dm3] 3L_22166303_SNP [dm6]	A	C	4.040e^-4	0.887	INTRON olf413
2R	5720270	2R_5720270_SNP [dm3] 2R_9832765_SNP [dm6]	C	G	4.041e^-4	0.887	INTRON hebe
2R	6371767	2R_6371767_SNP [dm3] 2R_10484262_SNP [dm6]	G	A	4.042e^-4	0.887	NON_SYNONYMOUS_CODING pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5456429	2L_5456429_SNP [dm3] 2L_5456429_SNP [dm6]	A	G	4.070e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19338522	2R_19338522_SNP [dm3] 2R_23450999_SNP [dm6]	T	G	4.077e^-4	0.887	INTRON CG43795
3R	21009289	3R_21009289_SNP [dm3] 3R_25183567_SNP [dm6]	T	G	4.085e^-4	0.887	UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	22161897	3L_22161897_SNP [dm3] 3L_22168797_SNP [dm6]	A	C	4.086e^-4	0.887	INTRON olf413	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20162854	2R_20162854_SNP [dm3] 2R_24275331_SNP [dm6]	G	A	4.087e^-4	0.887	UPSTREAM nvy INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20162881	2R_20162881_SNP [dm3] 2R_24275358_SNP [dm6]	A	G	4.087e^-4	0.887	UPSTREAM nvy INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1449022	2L_1449022_SNP [dm3] 2L_1449022_SNP [dm6]	G	A	4.091e^-4	0.887	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22158246	3L_22158246_SNP [dm3] 3L_22165146_SNP [dm6]	G	A	4.095e^-4	0.887	INTRON olf413	TF binding site mE1_TFBS_Kr mE1_TFBS_sens
3R	2595257	3R_2595257_SNP [dm3] 3R_6769535_SNP [dm6]	G	A	4.102e^-4	0.887	INTRON CR42721	TF binding site mE1_TFBS_cad
2L	14612486	2L_14612486_SNP [dm3] 2L_14612486_SNP [dm6]	C	T	4.103e^-4	0.887	UPSTREAM CR43411 INTRON osp	regulatory region REDfly_CRMs
2L	3157480	2L_3157480_SNP [dm3] 2L_3157480_SNP [dm6]	G	A	4.103e^-4	0.887	INTRON Mad
X	19163709	X_19163709_SNP [dm3] X_19269676_SNP [dm6]	A	T	4.103e^-4	0.887	UPSTREAM CG8010 INTRON Vav	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	12544325	2R_12544325_SNP [dm3] 2R_16656820_SNP [dm6]	G	A	4.104e^-4	0.887	SYNONYMOUS_CODING Picot	TF binding site mE1_TFBS_cad
2L	6605337	2L_6605337_SNP [dm3] 2L_6605337_SNP [dm6]	C	G	4.113e^-4	0.888	INTERGENIC
X	16729620	X_16729620_SNP [dm3] X_16835587_SNP [dm6]	A	G	4.119e^-4	0.888	UPSTREAM CG13004 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21340510	3R_21340510_SNP [dm3] 3R_25514788_SNP [dm6]	C	A	4.130e^-4	0.889	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13360916	2R_13360916_SNP [dm3] 2R_17473411_SNP [dm6]	T	C	4.139e^-4	0.889	UTR_3_PRIME qkr54B DOWNSTREAM qkr54B
3R	10863102	3R_10863102_SNP [dm3] 3R_15037380_SNP [dm6]	G	A	4.145e^-4	0.889	UTR_5_PRIME RpL10Aa UPSTREAM CR44944	TF binding site BDTNP1_TFBS_twi
3R	21192467	3R_21192467_SNP [dm3] 3R_25366745_SNP [dm6]	G	A	4.146e^-4	0.889	INTRON Fur1
2R	6463566	2R_6463566_SNP [dm3] 2R_10576061_SNP [dm6]	A	T	4.148e^-4	0.889	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11745092	2R_11745092_SNP [dm3] 2R_15857587_SNP [dm6]	T	C	4.152e^-4	0.889	DOWNSTREAM Gpo-1 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8650506	3L_8650506_SNP [dm3] 3L_8657406_SNP [dm6]	T	G	4.175e^-4	0.892	INTERGENIC
3L	517493	3L_517493_SNP [dm3] 3L_517493_SNP [dm6]	C	T	4.180e^-4	0.892	INTRON klar
2L	14474335	2L_14474335_DEL [dm3] 2L_14474335_DEL [dm6]	CT	C	4.199e^-4	0.892	INTERGENIC
X	13865955	X_13865955_SNP [dm3] X_13971922_SNP [dm6]	A	C	4.206e^-4	0.892	INTRON mamo
3R	2742353	3R_2742353_SNP [dm3] 3R_6916631_SNP [dm6]	A	C	4.207e^-4	0.892	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	21192441	3R_21192441_SNP [dm3] 3R_25366719_SNP [dm6]	C	A	4.214e^-4	0.892	INTRON Fur1
3R	10576549	3R_10576549_SNP [dm3] 3R_14750827_SNP [dm6]	T	A	4.216e^-4	0.892	DOWNSTREAM CG7362 INTRON jvl & 1 other
3R	19419823	3R_19419823_SNP [dm3] 3R_23594101_SNP [dm6]	A	C	4.217e^-4	0.892	NON_SYNONYMOUS_CODING CG16723
3R	21192285	3R_21192285_SNP [dm3] 3R_25366563_SNP [dm6]	C	A	4.218e^-4	0.892	INTRON Fur1
3L	12625967	3L_12625967_SNP [dm3] 3L_12632867_SNP [dm6]	A	G	4.219e^-4	0.892	INTRON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1582869	3L_1582869_SNP [dm3] 3L_1582869_SNP [dm6]	T	C	4.220e^-4	0.892	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12616777	2R_12616777_SNP [dm3] 2R_16729272_SNP [dm6]	A	T	4.224e^-4	0.892	INTRON CG30463
3R	19293973	3R_19293973_DEL [dm3] 3R_23468251_DEL [dm6]	GCTTA	T	4.228e^-4	0.892	INTRON CG4374
3R	15432987	3R_15432987_SNP [dm3] 3R_19607265_SNP [dm6]	A	G	4.237e^-4	0.892	UTR_5_PRIME CG17751 DOWNSTREAM CG7342
2R	2116737	2R_2116737_SNP [dm3] 2R_6229232_SNP [dm6]	A	C	4.240e^-4	0.892	UPSTREAM bin3 INTRON bin3
2R	16481630	2R_16481630_SNP [dm3] 2R_20594125_SNP [dm6]	C	A	4.243e^-4	0.892	INTRON bl
3R	26098100	3R_26098100_SNP [dm3] 3R_30272378_SNP [dm6]	A	T	4.245e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18564991	2R_18564991_SNP [dm3] 2R_22677486_SNP [dm6]	A	T	4.268e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10290216	3R_10290216_SNP [dm3] 3R_14464494_SNP [dm6]	A	G	4.272e^-4	0.892	INTRON cv-c
3R	19424748	3R_19424748_SNP [dm3] 3R_23599026_SNP [dm6]	G	T	4.289e^-4	0.892	NON_SYNONYMOUS_CODING CG10183
X	11076749	X_11076749_SNP [dm3] X_11182716_SNP [dm6]	C	T	4.303e^-4	0.892	UPSTREAM CG15200 INTERGENIC
3L	4980856	3L_4980856_SNP [dm3] 3L_4980856_SNP [dm6]	C	T	4.312e^-4	0.892	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
3R	19490210	3R_19490210_SNP [dm3] 3R_23664488_SNP [dm6]	G	A	4.314e^-4	0.892	INTRON CG31145
2R	6463837	2R_6463837_SNP [dm3] 2R_10576332_SNP [dm6]	T	G	4.319e^-4	0.892	INTRON psq	TF binding site BDTNP1_TFBS_dl
3R	2615471	3R_2615471_SNP [dm3] 3R_6789749_SNP [dm6]	A	C	4.338e^-4	0.892	INTERGENIC
2R	4481454	2R_4481454_SNP [dm3] 2R_8593949_SNP [dm6]	A	T	4.338e^-4	0.892	DOWNSTREAM CG43183 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3990420	2L_3990420_SNP [dm3] 2L_3990420_SNP [dm6]	A	G	4.348e^-4	0.892	INTRON fred	TF binding site mE1_TFBS_cad
2L	6479292	2L_6479292_SNP [dm3] 2L_6479292_SNP [dm6]	G	T	4.348e^-4	0.892	INTRON Sec61alpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	22156754	3L_22156754_INS [dm3] 3L_22163654_INS [dm6]	G	GGGA	4.351e^-4	0.892	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25189722	3R_25189722_SNP [dm3] 3R_29364000_SNP [dm6]	C	T	4.354e^-4	0.892	INTERGENIC
3R	3109228	3R_3109228_SNP [dm3] 3R_7283506_SNP [dm6]	C	T	4.355e^-4	0.892	INTRON rn
3L	18565360	3L_18565360_SNP [dm3] 3L_18572260_SNP [dm6]	T	C	4.373e^-4	0.892	INTRON AstC-R1
2R	17512459	2R_17512459_SNP [dm3] 2R_21624954_SNP [dm6]	C	A	4.379e^-4	0.892	UPSTREAM mahj & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5028760	2L_5028760_SNP [dm3] 2L_5028760_SNP [dm6]	G	C	4.382e^-4	0.892	UPSTREAM vkg & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	11101894	3L_11101894_SNP [dm3] 3L_11108794_SNP [dm6]	T	A	4.386e^-4	0.892	UPSTREAM CG7638 DOWNSTREAM CG34012 & 1 other INTERGENIC
3R	12689738	3R_12689738_SNP [dm3] 3R_16864016_SNP [dm6]	T	G	4.387e^-4	0.892	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Kr
3L	10484693	3L_10484693_SNP [dm3] 3L_10491593_SNP [dm6]	A	G	4.401e^-4	0.892	SYNONYMOUS_CODING S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_cad
3R	5822788	3R_5822788_DEL [dm3] 3R_9997066_DEL [dm6]	GG	G	4.401e^-4	0.892	UPSTREAM Spn85F & 1 other INTERGENIC
2L	12246739	2L_12246739_SNP [dm3] 2L_12246739_SNP [dm6]	A	T	4.407e^-4	0.892	INTRON aret
3L	11109015	3L_11109015_SNP [dm3] 3L_11115915_SNP [dm6]	C	T	4.410e^-4	0.892	SYNONYMOUS_CODING fd68A
3L	8502965	3L_8502965_SNP [dm3] 3L_8509865_SNP [dm6]	C	T	4.421e^-4	0.892	UPSTREAM CG6745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15798883	2R_15798883_SNP [dm3] 2R_19911378_SNP [dm6]	T	C	4.421e^-4	0.892	EXON CR44573
3R	10247679	3R_10247679_SNP [dm3] 3R_14421957_SNP [dm6]	A	T	4.426e^-4	0.892	DOWNSTREAM natalisin INTRON cv-c EXON CR44176
3L	10732997	3L_10732997_SNP [dm3] 3L_10739897_SNP [dm6]	G	A	4.441e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	8584266	2R_8584266_SNP [dm3] 2R_12696761_SNP [dm6]	T	A	4.443e^-4	0.892	INTERGENIC
3R	4031911	3R_4031911_INS [dm3] 3R_8206189_INS [dm6]	G	GCATGT	4.460e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5621202	X_5621202_SNP [dm3] X_5727169_SNP [dm6]	A	T	4.460e^-4	0.892	INTRON CG32758
3L	20313550	3L_20313550_SNP [dm3] 3L_20320450_SNP [dm6]	C	T	4.472e^-4	0.892	UPSTREAM Spn77Bb DOWNSTREAM Spn77Ba INTERGENIC
3R	19182101	3R_19182101_INS [dm3] 3R_23356379_INS [dm6]	T	TT	4.474e^-4	0.892	UTR_5_PRIME Sec13 UPSTREAM Sec13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23970095	3R_23970095_SNP [dm3] 3R_28144373_SNP [dm6]	G	A	4.476e^-4	0.892	INTERGENIC
2R	13363475	2R_13363475_SNP [dm3] 2R_17475970_SNP [dm6]	T	A	4.477e^-4	0.892	UTR_5_PRIME CG6520 DOWNSTREAM qkr54B	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	19066640	3R_19066640_SNP [dm3] 3R_23240918_SNP [dm6]	T	C	4.478e^-4	0.892	UPSTREAM CG4467 INTRON CG4467
3R	25427860	3R_25427860_SNP [dm3] 3R_29602138_SNP [dm6]	T	A	4.481e^-4	0.892	INTRON alph
3R	25350232	3R_25350232_SNP [dm3] 3R_29524510_SNP [dm6]	G	A	4.487e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15779915	2R_15779915_SNP [dm3] 2R_19892410_SNP [dm6]	T	G	4.487e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	19347252	3R_19347252_SNP [dm3] 3R_23521530_SNP [dm6]	A	G	4.488e^-4	0.892	UTR_5_PRIME CG10177 DOWNSTREAM CG10175	TF binding site mE1_TFBS_cad
3L	22556620	3L_22556620_SNP [dm3] 3L_22563520_SNP [dm6]	G	C	4.491e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7774972	X_7774972_SNP [dm3] X_7880939_SNP [dm6]	T	A	4.504e^-4	0.892	SYNONYMOUS_CODING Ir7e DOWNSTREAM Ir7f
X	4106387	X_4106387_DEL [dm3] X_4212354_DEL [dm6]	GG	G	4.505e^-4	0.892	UPSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8502971	3L_8502971_SNP [dm3] 3L_8509871_SNP [dm6]	T	C	4.508e^-4	0.892	UPSTREAM CG6745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1454647	3L_1454647_SNP [dm3] 3L_1454647_SNP [dm6]	G	A	4.509e^-4	0.892	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	18290163	3L_18290163_SNP [dm3] 3L_18297063_SNP [dm6]	T	A	4.510e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	20880754	X_20880754_SNP [dm3] X_21009727_SNP [dm6]	T	A	4.517e^-4	0.892	INTERGENIC
3R	23156572	3R_23156572_SNP [dm3] 3R_27330850_SNP [dm6]	G	A	4.535e^-4	0.892	UTR_5_PRIME CG3330
3L	22228216	3L_22228216_SNP [dm3] 3L_22235116_SNP [dm6]	C	T	4.537e^-4	0.892	INTRON olf413
X	7681149	X_7681149_SNP [dm3] X_7787116_SNP [dm6]	G	A	4.551e^-4	0.892	INTERGENIC
2L	10123354	2L_10123354_SNP [dm3] 2L_10123354_SNP [dm6]	T	C	4.551e^-4	0.892	UPSTREAM CG13135 INTRON CG44153 & 1 other
3L	7151183	3L_7151183_SNP [dm3] 3L_7158083_SNP [dm6]	C	A	4.553e^-4	0.892	UPSTREAM CG8620 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2621179	3R_2621179_SNP [dm3] 3R_6795457_SNP [dm6]	A	T	4.553e^-4	0.892	INTRON Dfd
3L	20539825	3L_20539825_SNP [dm3] 3L_20546725_SNP [dm6]	C	G	4.568e^-4	0.892	INTERGENIC
3R	2644986	3R_2644986_SNP [dm3] 3R_6819264_SNP [dm6]	T	A	4.570e^-4	0.892	UPSTREAM tRNA:K5:84ABd DOWNSTREAM tRNA:CR31485:Psi & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19723880	2L_19723880_SNP [dm3] 2L_19723880_SNP [dm6]	A	C	4.578e^-4	0.892	INTRON Lar
3R	2614966	3R_2614966_SNP [dm3] 3R_6789244_SNP [dm6]	C	T	4.579e^-4	0.892	INTERGENIC
2R	4998116	2R_4998116_SNP [dm3] 2R_9110611_SNP [dm6]	T	G	4.585e^-4	0.892	UPSTREAM Pmm45A & 1 other DOWNSTREAM Mys45A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3R	2908443	3R_2908443_SNP [dm3] 3R_7082721_SNP [dm6]	C	T	4.586e^-4	0.892	SYNONYMOUS_CODING Dpck DOWNSTREAM CG1091	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	4980896	3L_4980896_SNP [dm3] 3L_4980896_SNP [dm6]	C	A	4.588e^-4	0.892	UPSTREAM CG17030 INTRON Con EXON CR45685	TF binding site mE1_TFBS_HSA
X	9643586	X_9643586_SNP [dm3] X_9749553_SNP [dm6]	G	A	4.591e^-4	0.892	INTRON Sp1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19050906	3R_19050906_SNP [dm3] 3R_23225184_SNP [dm6]	G	T	4.614e^-4	0.892	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11824763	2R_11824763_SNP [dm3] 2R_15937258_SNP [dm6]	C	A	4.622e^-4	0.892	UTR_3_PRIME Mlf INTRON Mlf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8562875	3L_8562875_INS [dm3] 3L_8569775_INS [dm6]	C	CC	4.623e^-4	0.892	INTRON rhea EXON CR43910	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19680566	2L_19680566_SNP [dm3] 2L_19680566_SNP [dm6]	A	C	4.641e^-4	0.892	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	22531429	3L_22531429_SNP [dm3] 3L_22538329_SNP [dm6]	C	T	4.644e^-4	0.892	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22334743	3L_22334743_SNP [dm3] 3L_22341643_SNP [dm6]	G	T	4.651e^-4	0.892	INTRON Ten-m
3L	20416432	3L_20416432_SNP [dm3] 3L_20423332_SNP [dm6]	T	A	4.658e^-4	0.892	NON_SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25550656	3R_25550656_SNP [dm3] 3R_29724934_SNP [dm6]	C	T	4.659e^-4	0.892	START_GAINED CG7593 UTR_5_PRIME CG7593 UPSTREAM CG18731 & 1 other DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	11280498	X_11280498_SNP [dm3] X_11386465_SNP [dm6]	T	C	4.660e^-4	0.892	INTRON dlg1
X	8628881	X_8628881_SNP [dm3] X_8734848_SNP [dm6]	G	T	4.667e^-4	0.892	INTERGENIC
3R	21192449	3R_21192449_SNP [dm3] 3R_25366727_SNP [dm6]	A	T	4.673e^-4	0.892	INTRON Fur1
3L	11626430	3L_11626430_SNP [dm3] 3L_11633330_SNP [dm6]	A	C	4.681e^-4	0.892	UPSTREAM CR45158 INTRON CG32091
3R	2956664	3R_2956664_SNP [dm3] 3R_7130942_SNP [dm6]	G	C	4.682e^-4	0.892	UPSTREAM CG31493 DOWNSTREAM tRNA:CR31491 & 1 other INTERGENIC
X	6732880	X_6732880_SNP [dm3] X_6838847_SNP [dm6]	A	G	4.683e^-4	0.892	UTR_3_PRIME CG14435 DOWNSTREAM nonC & 1 other
2R	2117279	2R_2117279_SNP [dm3] 2R_6229774_SNP [dm6]	A	G	4.685e^-4	0.892	INTRON bin3
3R	2609478	3R_2609478_SNP [dm3] 3R_6783756_SNP [dm6]	G	A	4.686e^-4	0.892	INTERGENIC	TF binding site mE1_TFBS_inv
X	17805042	X_17805042_SNP [dm3] X_17911009_SNP [dm6]	A	C	4.696e^-4	0.892	UTR_3_PRIME Vps4 UPSTREAM CG6847 DOWNSTREAM Vps4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10180237	2L_10180237_SNP [dm3] 2L_10180237_SNP [dm6]	G	A	4.699e^-4	0.892	UTR_5_PRIME CG44153	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19291324	3R_19291324_SNP [dm3] 3R_23465602_SNP [dm6]	C	T	4.708e^-4	0.892	INTRON CG4374
3R	2950826	3R_2950826_SNP [dm3] 3R_7125104_SNP [dm6]	C	T	4.730e^-4	0.892	UPSTREAM Alh INTRON CG10098	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	22515710	3L_22515710_SNP [dm3] 3L_22522610_SNP [dm6]	A	T	4.730e^-4	0.892	INTERGENIC
2L	6706700	2L_6706700_SNP [dm3] 2L_6706700_SNP [dm6]	G	C	4.732e^-4	0.892	INTRON Tsp
3R	23329170	3R_23329170_SNP [dm3] 3R_27503448_SNP [dm6]	T	C	4.734e^-4	0.892	UPSTREAM CG5402 INTERGENIC
2L	9517739	2L_9517739_SNP [dm3] 2L_9517739_SNP [dm6]	A	G	4.742e^-4	0.892	SYNONYMOUS_CODING CG33298
2L	14609982	2L_14609982_SNP [dm3] 2L_14609982_SNP [dm6]	T	A	4.750e^-4	0.892	INTRON osp
3R	23924290	3R_23924290_SNP [dm3] 3R_28098568_SNP [dm6]	G	C	4.756e^-4	0.892	INTERGENIC
3R	19589816	3R_19589816_SNP [dm3] 3R_23764094_SNP [dm6]	G	C	4.764e^-4	0.892	UTR_5_PRIME Lsd-1 UPSTREAM Lsd-1 & 1 other
2R	8756788	2R_8756788_SNP [dm3] 2R_12869283_SNP [dm6]	T	G	4.772e^-4	0.892	UTR_5_PRIME CG17574 UPSTREAM bic EXON CR45140	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	18794231	3R_18794231_SNP [dm3] 3R_22968509_SNP [dm6]	C	A	4.773e^-4	0.892	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20398878	2R_20398878_SNP [dm3] 2R_24511355_SNP [dm6]	A	G	4.776e^-4	0.892	SYNONYMOUS_CODING Letm1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5209148	X_5209148_SNP [dm3] X_5315115_SNP [dm6]	T	A	4.784e^-4	0.892	UTR_3_PRIME CG4198 DOWNSTREAM CG15930	TF binding site mE1_TFBS_chinmo
3R	9997584	3R_9997584_SNP [dm3] 3R_14171862_SNP [dm6]	A	C	4.787e^-4	0.892	UTR_3_PRIME Dop1R1
2L	4437410	2L_4437410_SNP [dm3] 2L_4437410_SNP [dm6]	T	G	4.797e^-4	0.892	UPSTREAM CG43056 INTRON CG15431
3R	25550663	3R_25550663_SNP [dm3] 3R_29724941_SNP [dm6]	G	A	4.799e^-4	0.892	UTR_5_PRIME CG7593 UPSTREAM CG18731 & 1 other DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	1850636	3R_1850636_SNP [dm3] 3R_6024914_SNP [dm6]	T	C	4.814e^-4	0.892	DOWNSTREAM CG11459 INTERGENIC
3R	20224145	3R_20224145_SNP [dm3] 3R_24398423_SNP [dm6]	A	G	4.823e^-4	0.892	UTR_3_PRIME nAChRalpha1	TF binding site mE1_TFBS_kn
3L	10534952	3L_10534952_INS [dm3] 3L_10541852_INS [dm6]	A	ACATA	4.833e^-4	0.892	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3R	21192458	3R_21192458_SNP [dm3] 3R_25366736_SNP [dm6]	C	T	4.842e^-4	0.892	INTRON Fur1
3R	10497387	3R_10497387_SNP [dm3] 3R_14671665_SNP [dm6]	G	A	4.844e^-4	0.892	NON_SYNONYMOUS_CODING Meltrin	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7070596	3L_7070596_SNP [dm3] 3L_7077496_SNP [dm6]	C	T	4.844e^-4	0.892	UPSTREAM CG8641 INTERGENIC
2L	15358792	2L_15358792_SNP [dm3] 2L_15358792_SNP [dm6]	C	T	4.864e^-4	0.892	INTERGENIC
3L	10878863	3L_10878863_SNP [dm3] 3L_10885763_SNP [dm6]	A	G	4.864e^-4	0.892	NON_SYNONYMOUS_CODING CG6404	TF binding site BDTNP1_TFBS_dl
3L	22355089	3L_22355089_SNP [dm3] 3L_22361989_SNP [dm6]	G	T	4.868e^-4	0.892	INTRON Ten-m	TF binding site mE1_TFBS_HSA
2R	14705931	2R_14705931_SNP [dm3] 2R_18818426_SNP [dm6]	C	A	4.874e^-4	0.892	INTERGENIC
3R	17885195	3R_17885195_SNP [dm3] 3R_22059473_SNP [dm6]	A	G	4.882e^-4	0.892	INTRON how
3R	8022678	3R_8022678_SNP [dm3] 3R_12196956_SNP [dm6]	C	G	4.887e^-4	0.892	UPSTREAM CG3809 INTERGENIC	insulator Insulator_Class_II.mE01
3R	4058428	3R_4058428_SNP [dm3] 3R_8232706_SNP [dm6]	A	T	4.890e^-4	0.892	UPSTREAM CR45551 & 1 other DOWNSTREAM CR45549 INTERGENIC

By genomic position
Variant impact
Gene name

sd_Lifespan_Env_18 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results