DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.520e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1955 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	9868366	3L_9868366_SNP [dm3] 3L_9875266_SNP [dm6]	G	C	3.903e^-8	0.073	UPSTREAM CR45406 INTERGENIC
3L	9868368	3L_9868368_SNP [dm3] 3L_9875268_SNP [dm6]	T	A	1.942e^-7	0.182	UPSTREAM CR45406 INTERGENIC
3L	9868462	3L_9868462_SNP [dm3] 3L_9875362_SNP [dm6]	C	T	4.988e^-7	0.289	UPSTREAM CR45406 INTERGENIC
3L	9868459	3L_9868459_DEL [dm3] 3L_9875359_DEL [dm6]	AA	A	6.163e^-7	0.289	UPSTREAM CR45406 INTERGENIC
3L	4214246	3L_4214246_SNP [dm3] 3L_4214246_SNP [dm6]	T	C	9.994e^-7	0.315	INTRON CG43367	TF binding site mE1_TFBS_cad
3R	7608806	3R_7608806_SNP [dm3] 3R_11783084_SNP [dm6]	C	T	1.007e^-6	0.315	NON_SYNONYMOUS_CODING CG17360
3R	7760718	3R_7760718_DEL [dm3] 3R_11934996_DEL [dm6]	ACATTTCTCTCAATTA...	A	1.223e^-6	0.328	INTRON Cad87A
3L	7749863	3L_7749863_SNP [dm3] 3L_7756763_SNP [dm6]	A	C	3.468e^-6	0.573	UTR_5_PRIME CG32373 INTRON CG32373
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	3.563e^-6	0.573	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3R	7760600	3R_7760600_SNP [dm3] 3R_11934878_SNP [dm6]	G	A	3.752e^-6	0.573	INTRON Cad87A
3L	2652166	3L_2652166_SNP [dm3] 3L_2652166_SNP [dm6]	A	G	4.146e^-6	0.573	SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM Aats-pro	TF binding site mE1_TFBS_cad
3R	15875516	3R_15875516_SNP [dm3] 3R_20049794_SNP [dm6]	A	G	4.317e^-6	0.573	UTR_5_PRIME CG17193
3L	9868438	3L_9868438_INS [dm3] 3L_9875338_INS [dm6]	A	ATGAAGC	4.475e^-6	0.573	UPSTREAM CR45406 INTERGENIC
2R	17646587	2R_17646587_SNP [dm3] 2R_21759082_SNP [dm6]	G	C	4.920e^-6	0.573	INTERGENIC
X	16594435	X_16594435_SNP [dm3] X_16700402_SNP [dm6]	G	A	5.224e^-6	0.573	UPSTREAM CG9676 DOWNSTREAM spheroide INTRON CG4678
2R	5390807	2R_5390807_SNP [dm3] 2R_9503302_SNP [dm6]	C	G	5.659e^-6	0.573	UPSTREAM brp DOWNSTREAM Wnt2 INTERGENIC
X	16594436	X_16594436_SNP [dm3] X_16700403_SNP [dm6]	A	G	5.755e^-6	0.573	UPSTREAM CG9676 DOWNSTREAM spheroide INTRON CG4678
2R	14768699	2R_14768699_SNP [dm3] 2R_18881194_SNP [dm6]	T	C	5.794e^-6	0.573	INTRON sano
2R	9451633	2R_9451633_SNP [dm3] 2R_13564128_SNP [dm6]	A	C	5.813e^-6	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	14842595	3L_14842595_SNP [dm3] 3L_14849495_SNP [dm6]	G	C	6.108e^-6	0.573	INTRON CG17839
3L	9868331	3L_9868331_DEL [dm3] 3L_9875231_DEL [dm6]	TTTAA	T	6.435e^-6	0.574	UPSTREAM CR45406 INTERGENIC
3L	9866577	3L_9866577_SNP [dm3] 3L_9873477_SNP [dm6]	C	T	6.737e^-6	0.574	INTERGENIC
3R	7760597	3R_7760597_SNP [dm3] 3R_11934875_SNP [dm6]	A	C	9.579e^-6	0.63	INTRON Cad87A
3L	4214221	3L_4214221_SNP [dm3] 3L_4214221_SNP [dm6]	A	T	9.582e^-6	0.63	INTRON CG43367	TF binding site mE1_TFBS_cad
2L	18611546	2L_18611546_SNP [dm3] 2L_18611546_SNP [dm6]	G	A	9.645e^-6	0.63	INTRON Atac2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17018849	2L_17018849_SNP [dm3] 2L_17018849_SNP [dm6]	T	A	9.768e^-6	0.63	UPSTREAM CR45462 INTERGENIC
X	16982931	X_16982931_SNP [dm3] X_17088898_SNP [dm6]	T	C	1.008e^-5	0.63	INTERGENIC
2R	14597731	2R_14597731_SNP [dm3] 2R_18710226_SNP [dm6]	G	A	1.083e^-5	0.63	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
3L	9872333	3L_9872333_SNP [dm3] 3L_9879233_SNP [dm6]	A	G	1.152e^-5	0.63	UTR_5_PRIME CG34382 INTRON CG34382	TF binding site mE1_TFBS_inv
3L	9872339	3L_9872339_SNP [dm3] 3L_9879239_SNP [dm6]	C	T	1.152e^-5	0.63	START_GAINED CG34382 UTR_5_PRIME CG34382 INTRON CG34382	TF binding site mE1_TFBS_inv
X	16534869	X_16534869_SNP [dm3] X_16640836_SNP [dm6]	C	A	1.178e^-5	0.63	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	7024489	3R_7024489_SNP [dm3] 3R_11198767_SNP [dm6]	T	C	1.190e^-5	0.63	INTRON cu	TF binding site mE1_TFBS_Trl
3L	4214236	3L_4214236_SNP [dm3] 3L_4214236_SNP [dm6]	A	G	1.198e^-5	0.63	INTRON CG43367	TF binding site mE1_TFBS_cad
2R	9451425	2R_9451425_SNP [dm3] 2R_13563920_SNP [dm6]	A	C	1.205e^-5	0.63	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3R	12928681	3R_12928681_SNP [dm3] 3R_17102959_SNP [dm6]	G	T	1.208e^-5	0.63	INTRON cher
3L	9995471	3L_9995471_SNP [dm3] 3L_10002371_SNP [dm6]	T	G	1.241e^-5	0.63	INTRON dpr6
3L	9865397	3L_9865397_SNP [dm3] 3L_9872297_SNP [dm6]	C	A	1.244e^-5	0.63	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	23811543	3R_23811543_SNP [dm3] 3R_27985821_SNP [dm6]	C	A	1.377e^-5	0.68	INTRON betaTub97EF
3R	12928526	3R_12928526_SNP [dm3] 3R_17102804_SNP [dm6]	G	A	1.459e^-5	0.701	INTRON cher
3L	9865395	3L_9865395_SNP [dm3] 3L_9872295_SNP [dm6]	C	T	1.563e^-5	0.727	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	12928947	3R_12928947_SNP [dm3] 3R_17103225_SNP [dm6]	C	T	1.589e^-5	0.727	INTRON cher
3L	9873547	3L_9873547_SNP [dm3] 3L_9880447_SNP [dm6]	C	T	1.637e^-5	0.731	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
3R	7762418	3R_7762418_SNP [dm3] 3R_11936696_SNP [dm6]	T	C	1.730e^-5	0.733	INTRON Cad87A
3L	13893337	3L_13893337_SNP [dm3] 3L_13900237_SNP [dm6]	A	G	1.752e^-5	0.733	INTRON dysc
2R	6243686	2R_6243686_SNP [dm3] 2R_10356181_SNP [dm6]	A	G	1.759e^-5	0.733	UTR_3_PRIME CG42733 UPSTREAM CG12902 & 1 other INTRON CG42732
2L	9299168	2L_9299168_SNP [dm3] 2L_9299168_SNP [dm6]	T	A	1.982e^-5	0.808	UTR_3_PRIME Ggamma30A
3R	5885708	3R_5885708_SNP [dm3] 3R_10059986_SNP [dm6]	T	A	2.097e^-5	0.821	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
3L	11009908	3L_11009908_SNP [dm3] 3L_11016808_SNP [dm6]	T	G	2.172e^-5	0.821	INTERGENIC
3L	17235864	3L_17235864_SNP [dm3] 3L_17242764_SNP [dm6]	G	T	2.193e^-5	0.821	UPSTREAM CG6512 & 1 other INTERGENIC	transposable element FlyBase
2R	8430389	2R_8430389_SNP [dm3] 2R_12542884_SNP [dm6]	G	A	2.218e^-5	0.821	INTRON fra
3L	7196193	3L_7196193_SNP [dm3] 3L_7203093_SNP [dm6]	A	T	2.383e^-5	0.821	INTERGENIC
3L	7196200	3L_7196200_SNP [dm3] 3L_7203100_SNP [dm6]	C	A	2.383e^-5	0.821	INTERGENIC
3L	7196203	3L_7196203_SNP [dm3] 3L_7203103_SNP [dm6]	G	A	2.383e^-5	0.821	INTERGENIC
3L	4214218	3L_4214218_SNP [dm3] 3L_4214218_SNP [dm6]	A	C	2.389e^-5	0.821	INTRON CG43367	TF binding site mE1_TFBS_cad
3L	7548817	3L_7548817_SNP [dm3] 3L_7555717_SNP [dm6]	T	G	2.423e^-5	0.821	DOWNSTREAM CG14837 INTERGENIC
3R	21833645	3R_21833645_SNP [dm3] 3R_26007923_SNP [dm6]	C	A	2.523e^-5	0.821	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	7024564	3R_7024564_SNP [dm3] 3R_11198842_SNP [dm6]	G	T	2.534e^-5	0.821	INTRON cu
2R	13719438	2R_13719438_SNP [dm3] 2R_17831933_SNP [dm6]	T	A	2.538e^-5	0.821	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	3452470	3L_3452470_SNP [dm3] 3L_3452470_SNP [dm6]	A	G	2.860e^-5	0.908	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18721583	3L_18721583_SNP [dm3] 3L_18728483_SNP [dm6]	A	G	2.906e^-5	0.908	INTERGENIC
3L	9864148	3L_9864148_SNP [dm3] 3L_9871048_SNP [dm6]	A	T	2.973e^-5	0.914	DOWNSTREAM CG8108 INTERGENIC
2R	9900209	2R_9900209_SNP [dm3] 2R_14012704_SNP [dm6]	G	A	3.122e^-5	0.92	INTRON mam
2R	9451603	2R_9451603_SNP [dm3] 2R_13564098_SNP [dm6]	G	T	3.122e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	14360989	3L_14360989_DEL [dm3] 3L_14367889_DEL [dm6]	TGCA	T	3.197e^-5	0.92	UTR_3_PRIME fz
3L	4214238	3L_4214238_SNP [dm3] 3L_4214238_SNP [dm6]	A	C	3.316e^-5	0.92	INTRON CG43367	TF binding site mE1_TFBS_cad
3L	5987027	3L_5987027_SNP [dm3] 3L_5993927_SNP [dm6]	A	G	3.334e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18589261	3R_18589261_SNP [dm3] 3R_22763539_SNP [dm6]	A	T	3.349e^-5	0.92	NON_SYNONYMOUS_CODING CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other
3L	5987047	3L_5987047_SNP [dm3] 3L_5993947_SNP [dm6]	G	T	3.391e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9265943	2R_9265943_SNP [dm3] 2R_13378438_SNP [dm6]	C	G	3.441e^-5	0.92	UPSTREAM CG10814 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7272870	3L_7272870_SNP [dm3] 3L_7279770_SNP [dm6]	G	T	3.497e^-5	0.92	INTRON unc-13-4A
3L	4327734	3L_4327734_SNP [dm3] 3L_4327734_SNP [dm6]	G	A	3.605e^-5	0.92	INTRON Cip4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11331705	2L_11331705_SNP [dm3] 2L_11331705_SNP [dm6]	A	T	3.611e^-5	0.92	DOWNSTREAM CR44584 INTERGENIC
3L	3134872	3L_3134872_SNP [dm3] 3L_3134872_SNP [dm6]	G	T	3.779e^-5	0.92	UPSTREAM CG11537 INTRON CG11537
2R	9524449	2R_9524449_SNP [dm3] 2R_13636944_SNP [dm6]	T	C	3.812e^-5	0.92	INTRON fas
2R	9524450	2R_9524450_SNP [dm3] 2R_13636945_SNP [dm6]	G	C	3.812e^-5	0.92	INTRON fas
X	4859846	X_4859846_SNP [dm3] X_4965813_SNP [dm6]	A	C	3.956e^-5	0.92	INTRON CR44833	regulatory region REDfly_CRMs
2L	9757209	2L_9757209_SNP [dm3] 2L_9757209_SNP [dm6]	T	C	3.966e^-5	0.92	INTERGENIC
X	12849231	X_12849231_INS [dm3] X_12955198_INS [dm6]	A	AGAAACACA	4.155e^-5	0.92	INTRON hec
3L	8690701	3L_8690701_SNP [dm3] 3L_8697601_SNP [dm6]	G	T	4.168e^-5	0.92	INTERGENIC
2R	14090542	2R_14090542_SNP [dm3] 2R_18203037_SNP [dm6]	G	A	4.397e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23814074	3R_23814074_SNP [dm3] 3R_27988352_SNP [dm6]	A	G	4.687e^-5	0.92	UTR_5_PRIME betaTub97EF	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	17018553	2L_17018553_SNP [dm3] 2L_17018553_SNP [dm6]	C	G	4.745e^-5	0.92	UPSTREAM CR45462 INTERGENIC
3L	14842474	3L_14842474_SNP [dm3] 3L_14849374_SNP [dm6]	G	C	4.765e^-5	0.92	INTRON CG17839
3R	7115084	3R_7115084_SNP [dm3] 3R_11289362_SNP [dm6]	T	A	4.922e^-5	0.92	INTRON CR31386
2L	19226230	2L_19226230_DEL [dm3] 2L_19226230_DEL [dm6]	GGGAGGTGG	G	4.950e^-5	0.92	INTERGENIC
2L	2423899	2L_2423899_SNP [dm3] 2L_2423899_SNP [dm6]	C	A	4.957e^-5	0.92	UTR_3_PRIME CG9886 UPSTREAM CG44139 DOWNSTREAM CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13719441	2R_13719441_SNP [dm3] 2R_17831936_SNP [dm6]	A	C	4.981e^-5	0.92	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	3236134	2L_3236134_SNP [dm3] 2L_3236134_SNP [dm6]	G	A	5.005e^-5	0.92	INTERGENIC
3R	14672708	3R_14672708_SNP [dm3] 3R_18846986_SNP [dm6]	G	A	5.071e^-5	0.92	INTRON CG18208
X	6147265	X_6147265_SNP [dm3] X_6253232_SNP [dm6]	G	A	5.125e^-5	0.92	INTRON Rbcn-3A
3L	8040591	3L_8040591_SNP [dm3] 3L_8047491_SNP [dm6]	G	T	5.159e^-5	0.92	INTRON nmo	TF binding site mE1_TFBS_cad
2R	14272455	2R_14272455_INS [dm3] 2R_18384950_INS [dm6]	A	AA	5.183e^-5	0.92	UTR_3_PRIME CG15067 DOWNSTREAM CG15067 & 2 others	TF binding site mE1_TFBS_cad
2R	11758821	2R_11758821_SNP [dm3] 2R_15871316_SNP [dm6]	C	A	5.201e^-5	0.92	UTR_3_PRIME sli	TF binding site mE1_TFBS_cad
3R	25395459	3R_25395459_INS [dm3] 3R_29569737_INS [dm6]	T	TT	5.269e^-5	0.92	INTERGENIC
2L	17017889	2L_17017889_SNP [dm3] 2L_17017889_SNP [dm6]	G	A	5.380e^-5	0.92	EXON CR45462
X	10921445	X_10921445_SNP [dm3] X_11027412_SNP [dm6]	G	C	5.404e^-5	0.92	INTRON CG42339
2R	12013949	2R_12013949_SNP [dm3] 2R_16126444_SNP [dm6]	C	T	5.492e^-5	0.92	INTRON spin	TF binding site BDTNP1_TFBS_dl
3R	21614780	3R_21614780_SNP [dm3] 3R_25789058_SNP [dm6]	G	A	5.511e^-5	0.92	NON_SYNONYMOUS_CODING CG31380 DOWNSTREAM CG31093	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2799809	3L_2799809_SNP [dm3] 3L_2799809_SNP [dm6]	G	T	5.528e^-5	0.92	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	15328901	3R_15328901_SNP [dm3] 3R_19503179_SNP [dm6]	G	C	5.626e^-5	0.92	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
3L	7272889	3L_7272889_SNP [dm3] 3L_7279789_SNP [dm6]	T	C	5.716e^-5	0.92	INTRON unc-13-4A
3L	9868700	3L_9868700_SNP [dm3] 3L_9875600_SNP [dm6]	T	G	5.795e^-5	0.92	UPSTREAM CR45406 INTERGENIC
2R	14723727	2R_14723727_INS [dm3] 2R_18836222_INS [dm6]	T	TT	5.810e^-5	0.92	DOWNSTREAM CG15099 INTRON CG15083
3R	5885676	3R_5885676_SNP [dm3] 3R_10059954_SNP [dm6]	G	C	5.830e^-5	0.92	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
3L	7272895	3L_7272895_SNP [dm3] 3L_7279795_SNP [dm6]	A	T	5.834e^-5	0.92	INTRON unc-13-4A
3L	7272898	3L_7272898_SNP [dm3] 3L_7279798_SNP [dm6]	C	T	5.909e^-5	0.92	INTRON unc-13-4A
2R	14597743	2R_14597743_SNP [dm3] 2R_18710238_SNP [dm6]	G	A	5.954e^-5	0.92	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
2L	7743125	2L_7743125_SNP [dm3] 2L_7743125_SNP [dm6]	T	C	5.985e^-5	0.92	DOWNSTREAM CG7214 INTERGENIC
3L	22416708	3L_22416708_SNP [dm3] 3L_22423608_SNP [dm6]	G	A	6.107e^-5	0.92	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12251344	3R_12251344_SNP [dm3] 3R_16425622_SNP [dm6]	C	G	6.114e^-5	0.92	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
2L	5886762	2L_5886762_SNP [dm3] 2L_5886762_SNP [dm6]	C	T	6.114e^-5	0.92	DOWNSTREAM CR44577 & 1 other INTERGENIC
3L	7272853	3L_7272853_SNP [dm3] 3L_7279753_SNP [dm6]	C	A	6.128e^-5	0.92	INTRON unc-13-4A
3L	7272884	3L_7272884_SNP [dm3] 3L_7279784_SNP [dm6]	G	A	6.128e^-5	0.92	INTRON unc-13-4A
3L	7272885	3L_7272885_INS [dm3] 3L_7279785_INS [dm6]	A	ACTAACTTAAAATCT...	6.128e^-5	0.92	INTRON unc-13-4A
3L	7272887	3L_7272887_SNP [dm3] 3L_7279787_SNP [dm6]	A	G	6.128e^-5	0.92	INTRON unc-13-4A
3R	19294000	3R_19294000_SNP [dm3] 3R_23468278_SNP [dm6]	T	C	6.135e^-5	0.92	INTRON CG4374
3L	17285906	3L_17285906_SNP [dm3] 3L_17292806_SNP [dm6]	A	T	6.142e^-5	0.92	INTERGENIC
3L	7272804	3L_7272804_SNP [dm3] 3L_7279704_SNP [dm6]	C	T	6.204e^-5	0.92	INTRON unc-13-4A
2L	1340458	2L_1340458_INS [dm3] 2L_1340458_INS [dm6]	T	TCCTTT	6.238e^-5	0.92	DOWNSTREAM CG33923 INTERGENIC
3L	10526595	3L_10526595_SNP [dm3] 3L_10533495_SNP [dm6]	T	C	6.253e^-5	0.92	INTRON A2bp1
3L	7272892	3L_7272892_SNP [dm3] 3L_7279792_SNP [dm6]	C	A	6.264e^-5	0.92	INTRON unc-13-4A
2L	516240	2L_516240_SNP [dm3] 2L_516240_SNP [dm6]	C	T	6.328e^-5	0.92	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26488945	3R_26488945_SNP [dm3] 3R_30663223_SNP [dm6]	A	G	6.446e^-5	0.92	INTERGENIC
3L	9864142	3L_9864142_SNP [dm3] 3L_9871042_SNP [dm6]	C	T	6.588e^-5	0.92	DOWNSTREAM CG8108 INTERGENIC
3L	1236322	3L_1236322_SNP [dm3] 3L_1236322_SNP [dm6]	T	A	6.655e^-5	0.92	DOWNSTREAM CG33966 & 2 others INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9450027	2R_9450027_SNP [dm3] 2R_13562522_SNP [dm6]	C	G	6.701e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18640477	3L_18640477_SNP [dm3] 3L_18647377_SNP [dm6]	C	T	6.723e^-5	0.92	INTRON MYPT-75D
3R	11945189	3R_11945189_SNP [dm3] 3R_16119467_SNP [dm6]	C	A	6.729e^-5	0.92	INTRON Sb
3R	12928745	3R_12928745_SNP [dm3] 3R_17103023_SNP [dm6]	A	G	6.751e^-5	0.92	INTRON cher
2R	16677373	2R_16677373_SNP [dm3] 2R_20789868_SNP [dm6]	G	C	6.953e^-5	0.92	SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
3L	1805266	3L_1805266_SNP [dm3] 3L_1805266_SNP [dm6]	A	G	7.066e^-5	0.92	SYNONYMOUS_CODING CG42676 DOWNSTREAM CG42676 & 1 other	TF binding site mE1_TFBS_cad
3R	23498569	3R_23498569_SNP [dm3] 3R_27672847_SNP [dm6]	T	C	7.084e^-5	0.92	INTRON unc80	TF binding site mE1_TFBS_chinmo
3L	9873289	3L_9873289_SNP [dm3] 3L_9880189_SNP [dm6]	C	A	7.153e^-5	0.92	INTRON CG34382	TF binding site mE1_TFBS_chinmo
2R	12583718	2R_12583718_SNP [dm3] 2R_16696213_SNP [dm6]	C	A	7.182e^-5	0.92	INTRON CG30463
2R	9913885	2R_9913885_SNP [dm3] 2R_14026380_SNP [dm6]	G	T	7.284e^-5	0.92	INTRON mam
2L	2423809	2L_2423809_SNP [dm3] 2L_2423809_SNP [dm6]	G	A	7.383e^-5	0.92	UTR_3_PRIME CG9886 UPSTREAM CG44139 DOWNSTREAM CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7300823	3L_7300823_SNP [dm3] 3L_7307723_SNP [dm6]	T	G	7.400e^-5	0.92	INTRON unc-13-4A
2L	12925293	2L_12925293_SNP [dm3] 2L_12925293_SNP [dm6]	T	A	7.478e^-5	0.92	UTR_3_PRIME ACXA UPSTREAM ACXE
3L	4237888	3L_4237888_SNP [dm3] 3L_4237888_SNP [dm6]	C	G	7.509e^-5	0.92	INTERGENIC
3L	7771846	3L_7771846_SNP [dm3] 3L_7778746_SNP [dm6]	T	A	7.588e^-5	0.92	INTRON CG32369	TF binding site mE1_TFBS_chinmo
3L	17285884	3L_17285884_SNP [dm3] 3L_17292784_SNP [dm6]	T	G	7.734e^-5	0.92	INTERGENIC
3R	7607180	3R_7607180_SNP [dm3] 3R_11781458_SNP [dm6]	G	T	7.751e^-5	0.92	UTR_3_PRIME CG17360 DOWNSTREAM CR45595	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9211736	3L_9211736_SNP [dm3] 3L_9218636_SNP [dm6]	A	C	7.764e^-5	0.92	INTERGENIC
3R	23287649	3R_23287649_SNP [dm3] 3R_27461927_SNP [dm6]	T	C	7.792e^-5	0.92	INTERGENIC
2R	16362521	2R_16362521_SNP [dm3] 2R_20475016_SNP [dm6]	A	T	7.835e^-5	0.92	INTRON CG12484
3L	9865768	3L_9865768_SNP [dm3] 3L_9872668_SNP [dm6]	A	T	7.897e^-5	0.92	INTERGENIC
3L	2814450	3L_2814450_SNP [dm3] 3L_2814450_SNP [dm6]	A	G	7.992e^-5	0.92	INTRON CG43444
3R	25395644	3R_25395644_SNP [dm3] 3R_29569922_SNP [dm6]	A	G	8.051e^-5	0.92	INTERGENIC
3R	5885755	3R_5885755_SNP [dm3] 3R_10060033_SNP [dm6]	C	G	8.196e^-5	0.92	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
2R	8525229	2R_8525229_SNP [dm3] 2R_12637724_SNP [dm6]	A	G	8.203e^-5	0.92	SYNONYMOUS_CODING Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16776836	2L_16776836_SNP [dm3] 2L_16776836_SNP [dm6]	T	C	8.220e^-5	0.92	INTRON Mhc
3L	22421182	3L_22421182_SNP [dm3] 3L_22428082_SNP [dm6]	G	A	8.300e^-5	0.92	INTERGENIC
3L	15043765	3L_15043765_SNP [dm3] 3L_15050665_SNP [dm6]	T	G	8.330e^-5	0.92	NON_SYNONYMOUS_CODING CG12310 UPSTREAM CG18581 DOWNSTREAM CG43679 INTRON Sytbeta
X	17921789	X_17921789_SNP [dm3] X_18027756_SNP [dm6]	A	C	8.475e^-5	0.92	INTRON Sh & 1 other
3R	2856694	3R_2856694_SNP [dm3] 3R_7030972_SNP [dm6]	A	T	8.493e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16123842	2R_16123842_SNP [dm3] 2R_20236337_SNP [dm6]	T	C	8.595e^-5	0.92	UTR_5_PRIME CG11099 UPSTREAM CG11099 DOWNSTREAM CG44624 & 1 other
3L	658641	3L_658641_SNP [dm3] 3L_658641_SNP [dm6]	A	G	8.621e^-5	0.92	DOWNSTREAM Rev1 INTERGENIC
X	14893012	X_14893012_INS [dm3] X_14998979_INS [dm6]	C	CCTGGTGATGGATC...	8.630e^-5	0.92	UTR_3_PRIME eag INTRON eag
3L	7272936	3L_7272936_SNP [dm3] 3L_7279836_SNP [dm6]	T	G	8.663e^-5	0.92	INTRON unc-13-4A
2L	17017723	2L_17017723_SNP [dm3] 2L_17017723_SNP [dm6]	C	T	8.687e^-5	0.92	DOWNSTREAM CR45462 INTERGENIC
3L	9865386	3L_9865386_INS [dm3] 3L_9872286_INS [dm6]	T	TATC	8.729e^-5	0.92	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	5885770	3R_5885770_SNP [dm3] 3R_10060048_SNP [dm6]	G	T	8.752e^-5	0.92	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
2L	15233392	2L_15233392_SNP [dm3] 2L_15233392_SNP [dm6]	A	G	8.783e^-5	0.92	INTRON ZnT35C
3L	16776823	3L_16776823_SNP [dm3] 3L_16783723_SNP [dm6]	G	A	8.785e^-5	0.92	NON_SYNONYMOUS_CODING CG9706	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8694481	3L_8694481_SNP [dm3] 3L_8701381_SNP [dm6]	C	T	8.815e^-5	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3240634	2L_3240634_SNP [dm3] 2L_3240634_SNP [dm6]	G	A	8.818e^-5	0.92	INTERGENIC
3L	9870446	3L_9870446_SNP [dm3] 3L_9877346_SNP [dm6]	A	G	8.859e^-5	0.92	DOWNSTREAM CR45406 INTERGENIC
3L	8690352	3L_8690352_SNP [dm3] 3L_8697252_SNP [dm6]	A	T	8.863e^-5	0.92	INTERGENIC
2L	15237222	2L_15237222_SNP [dm3] 2L_15237222_SNP [dm6]	A	T	8.912e^-5	0.92	INTRON ZnT35C
2R	12619901	2R_12619901_INS [dm3] 2R_16732396_INS [dm6]	A	ACAATA	9.162e^-5	0.92	UTR_5_PRIME CG30463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	15237221	2L_15237221_SNP [dm3] 2L_15237221_SNP [dm6]	C	T	9.189e^-5	0.92	INTRON ZnT35C
X	6147455	X_6147455_SNP [dm3] X_6253422_SNP [dm6]	A	T	9.202e^-5	0.92	INTRON Rbcn-3A
3R	18588745	3R_18588745_SNP [dm3] 3R_22763023_SNP [dm6]	T	C	9.218e^-5	0.92	SYNONYMOUS_CODING CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other
X	2528712	X_2528712_SNP [dm3] X_2634679_SNP [dm6]	C	T	9.276e^-5	0.92	INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	9.305e^-5	0.92	INTRON Mhc
2R	14598384	2R_14598384_SNP [dm3] 2R_18710879_SNP [dm6]	T	G	9.318e^-5	0.92	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21313050	3R_21313050_SNP [dm3] 3R_25487328_SNP [dm6]	C	T	9.366e^-5	0.92	SYNONYMOUS_CODING Dhap-at	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14598399	2R_14598399_SNP [dm3] 2R_18710894_SNP [dm6]	C	T	9.405e^-5	0.92	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8524051	X_8524051_SNP [dm3] X_8630018_SNP [dm6]	T	C	9.565e^-5	0.92	DOWNSTREAM oc INTERGENIC	TF binding site mE1_TFBS_cad
2R	10826363	2R_10826363_SNP [dm3] 2R_14938858_SNP [dm6]	A	C	9.669e^-5	0.92	INTRON Lap1
2L	16776827	2L_16776827_SNP [dm3] 2L_16776827_SNP [dm6]	T	A	9.782e^-5	0.92	INTRON Mhc
X	6147430	X_6147430_SNP [dm3] X_6253397_SNP [dm6]	C	T	9.812e^-5	0.92	INTRON Rbcn-3A
3L	7272823	3L_7272823_SNP [dm3] 3L_7279723_SNP [dm6]	G	C	9.882e^-5	0.92	INTRON unc-13-4A
2L	757051	2L_757051_SNP [dm3] 2L_757051_SNP [dm6]	G	A	9.907e^-5	0.92	INTRON GABA-B-R3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	27475154	3R_27475154_DEL [dm3] 3R_31649432_DEL [dm6]	GGATAT	A	1.001e^-4	0.92	INTRON kek6
3R	26675653	3R_26675653_SNP [dm3] 3R_30849931_SNP [dm6]	G	C	1.019e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	15220604	2L_15220604_SNP [dm3] 2L_15220604_SNP [dm6]	A	G	1.023e^-4	0.92	INTERGENIC
2R	14598375	2R_14598375_SNP [dm3] 2R_18710870_SNP [dm6]	A	T	1.035e^-4	0.92	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15471585	3R_15471585_SNP [dm3] 3R_19645863_SNP [dm6]	C	T	1.038e^-4	0.92	SYNONYMOUS_CODING Nup58	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10415141	X_10415141_DEL [dm3] X_10521108_DEL [dm6]	CC	C	1.044e^-4	0.92	INTRON spri
3L	7592913	3L_7592913_SNP [dm3] 3L_7599813_SNP [dm6]	C	T	1.052e^-4	0.92	INTRON CG33275
3L	12857969	3L_12857969_SNP [dm3] 3L_12864869_SNP [dm6]	A	C	1.057e^-4	0.92	INTERGENIC
3R	7859332	3R_7859332_SNP [dm3] 3R_12033610_SNP [dm6]	C	T	1.062e^-4	0.92	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	7777302	3R_7777302_SNP [dm3] 3R_11951580_SNP [dm6]	A	G	1.071e^-4	0.92	INTRON CG31211	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14598373	2R_14598373_SNP [dm3] 2R_18710868_SNP [dm6]	A	T	1.071e^-4	0.92	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16594179	X_16594179_SNP [dm3] X_16700146_SNP [dm6]	T	C	1.080e^-4	0.92	UTR_5_PRIME CG9676 DOWNSTREAM spheroide INTRON CG4678
3L	8690445	3L_8690445_DEL [dm3] 3L_8697345_DEL [dm6]	GGATAAATGCAAATGGTATT...	G	1.086e^-4	0.92	INTERGENIC
3L	9872987	3L_9872987_SNP [dm3] 3L_9879887_SNP [dm6]	T	C	1.087e^-4	0.92	INTRON CG34382
2L	12910906	2L_12910906_SNP [dm3] 2L_12910906_SNP [dm6]	A	G	1.087e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4239505	X_4239505_SNP [dm3] X_4345472_SNP [dm6]	T	A	1.105e^-4	0.92	INTRON norpA
3R	11535684	3R_11535684_INS [dm3] 3R_15709962_INS [dm6]	T	TT	1.108e^-4	0.92	INTERGENIC
3L	11407831	3L_11407831_SNP [dm3] 3L_11414731_SNP [dm6]	T	G	1.109e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4239480	X_4239480_SNP [dm3] X_4345447_SNP [dm6]	T	C	1.116e^-4	0.92	INTRON norpA
2L	2538392	2L_2538392_SNP [dm3] 2L_2538392_SNP [dm6]	G	A	1.116e^-4	0.92	INTERGENIC
X	7545308	X_7545308_SNP [dm3] X_7651275_SNP [dm6]	G	C	1.117e^-4	0.92	INTRON ct
2L	3240659	2L_3240659_SNP [dm3] 2L_3240659_SNP [dm6]	G	A	1.122e^-4	0.92	INTERGENIC
2R	12459530	2R_12459530_SNP [dm3] 2R_16572025_SNP [dm6]	T	G	1.123e^-4	0.92	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
X	5701631	X_5701631_SNP [dm3] X_5807598_SNP [dm6]	G	C	1.125e^-4	0.92	INTERGENIC
3R	24341429	3R_24341429_SNP [dm3] 3R_28515707_SNP [dm6]	A	G	1.135e^-4	0.92	INTRON Dhc98D
3L	9865391	3L_9865391_SNP [dm3] 3L_9872291_SNP [dm6]	T	G	1.138e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	9865928	3L_9865928_SNP [dm3] 3L_9872828_SNP [dm6]	T	A	1.138e^-4	0.92	INTERGENIC
2R	14272477	2R_14272477_DEL [dm3] 2R_18384972_DEL [dm6]	GATT	A	1.147e^-4	0.92	UTR_3_PRIME CG15067 DOWNSTREAM CG15067 & 2 others	TF binding site mE1_TFBS_cad
2R	14597887	2R_14597887_SNP [dm3] 2R_18710382_SNP [dm6]	C	T	1.149e^-4	0.92	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
3R	14380904	3R_14380904_SNP [dm3] 3R_18555182_SNP [dm6]	A	G	1.160e^-4	0.92	INTERGENIC
3R	9973411	3R_9973411_SNP [dm3] 3R_14147689_SNP [dm6]	G	T	1.168e^-4	0.92	DOWNSTREAM CG14355 INTERGENIC
X	8574399	X_8574399_INS [dm3] X_8680366_INS [dm6]	G	GTTAAGTCG	1.169e^-4	0.92	UTR_3_PRIME CG12772 UPSTREAM CG11284	TF binding site mE1_TFBS_ftz_f1
2R	15959414	2R_15959414_SNP [dm3] 2R_20071909_SNP [dm6]	A	G	1.183e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22374281	3L_22374281_SNP [dm3] 3L_22381181_SNP [dm6]	A	G	1.188e^-4	0.92	INTRON Ten-m
2L	11332616	2L_11332616_DEL [dm3] 2L_11332616_DEL [dm6]	AAGGA	A	1.189e^-4	0.92	INTRON CR44584
3L	9160592	3L_9160592_SNP [dm3] 3L_9167492_SNP [dm6]	A	T	1.199e^-4	0.92	INTRON Rdl
2L	6857181	2L_6857181_SNP [dm3] 2L_6857181_SNP [dm6]	C	T	1.206e^-4	0.92	SYNONYMOUS_CODING l_2_k09022	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2L	15233806	2L_15233806_SNP [dm3] 2L_15233806_SNP [dm6]	A	G	1.215e^-4	0.92	INTRON ZnT35C
3L	22391115	3L_22391115_SNP [dm3] 3L_22398015_SNP [dm6]	T	A	1.226e^-4	0.92	INTRON Ten-m
2L	3235567	2L_3235567_SNP [dm3] 2L_3235567_SNP [dm6]	A	C	1.229e^-4	0.92	INTERGENIC
2L	7581820	2L_7581820_INS [dm3] 2L_7581820_INS [dm6]	G	GCTAATGGGG	1.231e^-4	0.92	UPSTREAM Spn28B INTERGENIC
2R	15025544	2R_15025544_SNP [dm3] 2R_19138039_SNP [dm6]	G	T	1.235e^-4	0.92	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	6702555	3R_6702555_INS [dm3] 3R_10876833_INS [dm6]	T	TGTATGACCTAATTGTT...	1.235e^-4	0.92	INTRON Sodh-2 EXON CR45195	TF binding site mE1_TFBS_cad
2R	3546744	2R_3546744_SNP [dm3] 2R_7659239_SNP [dm6]	G	A	1.245e^-4	0.92	DOWNSTREAM CG1339 & 1 other INTERGENIC
X	8030773	X_8030773_SNP [dm3] X_8136740_SNP [dm6]	G	A	1.251e^-4	0.92	SYNONYMOUS_CODING CG2120 DOWNSTREAM Smox
2L	3235687	2L_3235687_SNP [dm3] 2L_3235687_SNP [dm6]	A	G	1.255e^-4	0.92	INTERGENIC
2R	15822634	2R_15822634_SNP [dm3] 2R_19935129_SNP [dm6]	C	T	1.261e^-4	0.92	DOWNSTREAM CR44627 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11963372	2R_11963372_INS [dm3] 2R_16075867_INS [dm6]	G	GTCGTG	1.273e^-4	0.92	INTERGENIC
2R	14597751	2R_14597751_SNP [dm3] 2R_18710246_SNP [dm6]	G	A	1.275e^-4	0.92	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
X	16593323	X_16593323_SNP [dm3] X_16699290_SNP [dm6]	T	C	1.275e^-4	0.92	UTR_3_PRIME CG9676 INTRON CG4678
2R	14598774	2R_14598774_SNP [dm3] 2R_18711269_SNP [dm6]	C	T	1.277e^-4	0.92	UPSTREAM pncr016:2R & 1 other INTERGENIC
3R	17209156	3R_17209156_SNP [dm3] 3R_21383434_SNP [dm6]	G	A	1.279e^-4	0.92	INTERGENIC
2L	15237219	2L_15237219_SNP [dm3] 2L_15237219_SNP [dm6]	C	A	1.280e^-4	0.92	INTRON ZnT35C
X	10388656	X_10388656_SNP [dm3] X_10494623_SNP [dm6]	G	C	1.282e^-4	0.92	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20811680	2L_20811680_SNP [dm3] 2L_20811680_SNP [dm6]	T	C	1.282e^-4	0.92	INTRON CG9328
3L	14327289	3L_14327289_SNP [dm3] 3L_14334189_SNP [dm6]	G	A	1.287e^-4	0.92	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7056119	2L_7056119_SNP [dm3] 2L_7056119_SNP [dm6]	A	T	1.289e^-4	0.92	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	17523186	3L_17523186_SNP [dm3] 3L_17530086_SNP [dm6]	G	A	1.307e^-4	0.92	UTR_5_PRIME Nedd4 UPSTREAM Edc3 EXON CR45165	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	2448934	2L_2448934_SNP [dm3] 2L_2448934_SNP [dm6]	C	T	1.310e^-4	0.92	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	3537326	2R_3537326_SNP [dm3] 2R_7649821_SNP [dm6]	C	A	1.318e^-4	0.92	UTR_3_PRIME CG43340 INTRON CG43340	insulator Insulator_Class_II.mE01
2L	2420397	2L_2420397_DEL [dm3] 2L_2420397_DEL [dm6]	TT	T	1.320e^-4	0.92	UPSTREAM CG34447 & 1 other INTERGENIC
3R	21624815	3R_21624815_SNP [dm3] 3R_25799093_SNP [dm6]	G	C	1.331e^-4	0.92	INTERGENIC
3L	908738	3L_908738_SNP [dm3] 3L_908738_SNP [dm6]	T	A	1.336e^-4	0.92	UPSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	7056101	2L_7056101_SNP [dm3] 2L_7056101_SNP [dm6]	A	T	1.336e^-4	0.92	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	7272926	3L_7272926_MNP [dm3] 3L_7279826_MNP [dm6]	CAA	TTG	1.336e^-4	0.92	INTRON unc-13-4A
X	9839792	X_9839792_DEL [dm3] X_9945759_DEL [dm6]	CAACTCTTACTCT...	AGG	1.336e^-4	0.92	INTERGENIC
3L	14327309	3L_14327309_SNP [dm3] 3L_14334209_SNP [dm6]	G	A	1.358e^-4	0.92	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18615685	2L_18615685_SNP [dm3] 2L_18615685_SNP [dm6]	C	T	1.362e^-4	0.92	SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13940679	2R_13940679_SNP [dm3] 2R_18053174_SNP [dm6]	C	A	1.366e^-4	0.92	SYNONYMOUS_CODING CG10911	TF binding site mE1_TFBS_cad
3L	9873012	3L_9873012_SNP [dm3] 3L_9879912_SNP [dm6]	T	A	1.368e^-4	0.92	INTRON CG34382
2R	8435080	2R_8435080_DEL [dm3] 2R_12547575_DEL [dm6]	AA	A	1.378e^-4	0.92	INTRON fra	TF binding site BDTNP1_TFBS_dl
3R	24578266	3R_24578266_SNP [dm3] 3R_28752544_SNP [dm6]	T	C	1.383e^-4	0.92	UPSTREAM CG10000 INTERGENIC
X	4672544	X_4672544_SNP [dm3] X_4778511_SNP [dm6]	T	C	1.383e^-4	0.92	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl
3R	17008609	3R_17008609_SNP [dm3] 3R_21182887_SNP [dm6]	A	T	1.398e^-4	0.92	INTRON SNF4Agamma
2R	13940881	2R_13940881_SNP [dm3] 2R_18053376_SNP [dm6]	A	T	1.400e^-4	0.92	INTRON CG10911	TF binding site mE1_TFBS_cad
3L	9133036	3L_9133036_SNP [dm3] 3L_9139936_SNP [dm6]	G	T	1.416e^-4	0.92	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad
2R	14597433	2R_14597433_SNP [dm3] 2R_18709928_SNP [dm6]	G	A	1.418e^-4	0.92	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7765178	3R_7765178_SNP [dm3] 3R_11939456_SNP [dm6]	T	A	1.418e^-4	0.92	INTRON Cad87A	TF binding site BDTNP1_TFBS_twi
2R	9162879	2R_9162879_SNP [dm3] 2R_13275374_SNP [dm6]	A	G	1.419e^-4	0.92	SYNONYMOUS_CODING Dh31-R
X	5757847	X_5757847_INS [dm3] X_5863814_INS [dm6]	G	GTCTGGAG	1.423e^-4	0.92	DOWNSTREAM CG43137 INTERGENIC
2L	15237186	2L_15237186_SNP [dm3] 2L_15237186_SNP [dm6]	C	T	1.446e^-4	0.92	INTRON ZnT35C
2R	12139146	2R_12139146_SNP [dm3] 2R_16251641_SNP [dm6]	G	T	1.456e^-4	0.92	INTRON CngA
2L	16219218	2L_16219218_SNP [dm3] 2L_16219218_SNP [dm6]	G	T	1.456e^-4	0.92	INTERGENIC
2R	12014024	2R_12014024_SNP [dm3] 2R_16126519_SNP [dm6]	T	G	1.457e^-4	0.92	INTRON spin	TF binding site BDTNP1_TFBS_dl
2R	11039680	2R_11039680_SNP [dm3] 2R_15152175_SNP [dm6]	A	T	1.465e^-4	0.92	INTERGENIC
X	8869526	X_8869526_SNP [dm3] X_8975493_SNP [dm6]	G	T	1.468e^-4	0.92	INTRON rdgA & 1 other
3L	8690711	3L_8690711_SNP [dm3] 3L_8697611_SNP [dm6]	G	C	1.471e^-4	0.92	INTERGENIC
2L	15233108	2L_15233108_SNP [dm3] 2L_15233108_SNP [dm6]	A	T	1.482e^-4	0.92	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	15233110	2L_15233110_SNP [dm3] 2L_15233110_SNP [dm6]	T	C	1.482e^-4	0.92	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	15233113	2L_15233113_SNP [dm3] 2L_15233113_SNP [dm6]	T	C	1.482e^-4	0.92	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	15233115	2L_15233115_SNP [dm3] 2L_15233115_SNP [dm6]	A	G	1.482e^-4	0.92	INTRON ZnT35C	TF binding site mE1_TFBS_cad
3L	15916629	3L_15916629_SNP [dm3] 3L_15923529_SNP [dm6]	C	T	1.483e^-4	0.92	INTRON sff
X	5042782	X_5042782_SNP [dm3] X_5148749_SNP [dm6]	A	T	1.484e^-4	0.92	INTRON rg & 1 other
3R	11309739	3R_11309739_SNP [dm3] 3R_15484017_SNP [dm6]	C	T	1.487e^-4	0.92	NON_SYNONYMOUS_CODING Rh6 DOWNSTREAM Trissin	TF binding site mE1_TFBS_chinmo
2L	16228564	2L_16228564_SNP [dm3] 2L_16228564_SNP [dm6]	T	A	1.491e^-4	0.92	INTERGENIC
2R	16105103	2R_16105103_SNP [dm3] 2R_20217598_SNP [dm6]	A	T	1.501e^-4	0.92	INTERGENIC
2R	10330573	2R_10330573_SNP [dm3] 2R_14443068_SNP [dm6]	A	G	1.502e^-4	0.92	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	8488493	2R_8488493_SNP [dm3] 2R_12600988_SNP [dm6]	C	A	1.505e^-4	0.92	INTRON Amph
3L	14676843	3L_14676843_INS [dm3] 3L_14683743_INS [dm6]	G	GAATAAATTGCATG...	1.510e^-4	0.92	INTRON ome
2L	7741574	2L_7741574_SNP [dm3] 2L_7741574_SNP [dm6]	T	A	1.516e^-4	0.92	UPSTREAM Acp1 INTERGENIC
3L	8033181	3L_8033181_SNP [dm3] 3L_8040081_SNP [dm6]	A	T	1.521e^-4	0.92	INTRON nmo
3L	9873011	3L_9873011_SNP [dm3] 3L_9879911_SNP [dm6]	A	T	1.536e^-4	0.92	INTRON CG34382
X	4672375	X_4672375_SNP [dm3] X_4778342_SNP [dm6]	C	T	1.538e^-4	0.92	UPSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15233111	2L_15233111_SNP [dm3] 2L_15233111_SNP [dm6]	A	C	1.548e^-4	0.92	INTRON ZnT35C	TF binding site mE1_TFBS_cad
X	12345872	X_12345872_SNP [dm3] X_12451839_SNP [dm6]	A	G	1.585e^-4	0.92	INTRON Pkcdelta
2L	3185866	2L_3185866_INS [dm3] 2L_3185866_INS [dm6]	A	AA	1.595e^-4	0.92	INTRON CG34393
2R	13432230	2R_13432230_SNP [dm3] 2R_17544725_SNP [dm6]	A	G	1.613e^-4	0.92	UPSTREAM cyp33 DOWNSTREAM CG43370 INTRON CG34194	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	2008226	3L_2008226_SNP [dm3] 3L_2008226_SNP [dm6]	G	T	1.615e^-4	0.92	DOWNSTREAM CR44535 INTERGENIC
3L	15936825	3L_15936825_SNP [dm3] 3L_15943725_SNP [dm6]	G	A	1.620e^-4	0.92	INTRON Pka-C3
2L	12444118	2L_12444118_SNP [dm3] 2L_12444118_SNP [dm6]	C	G	1.630e^-4	0.92	INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9522022	2R_9522022_SNP [dm3] 2R_13634517_SNP [dm6]	T	C	1.636e^-4	0.92	INTRON fas	TF binding site BDTNP1_TFBS_dl
2L	8837682	2L_8837682_SNP [dm3] 2L_8837682_SNP [dm6]	T	C	1.639e^-4	0.92	INTERGENIC
3R	6808879	3R_6808879_SNP [dm3] 3R_10983157_SNP [dm6]	G	A	1.651e^-4	0.92	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9717326	3R_9717326_SNP [dm3] 3R_13891604_SNP [dm6]	C	T	1.664e^-4	0.92	INTERGENIC
3L	3453891	3L_3453891_SNP [dm3] 3L_3453891_SNP [dm6]	T	C	1.670e^-4	0.92	INTRON eIF5B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6025605	3L_6025605_SNP [dm3] 3L_6032505_SNP [dm6]	C	A	1.680e^-4	0.92	DOWNSTREAM CG10477 INTERGENIC
2R	8841146	2R_8841146_SNP [dm3] 2R_12953641_SNP [dm6]	A	C	1.681e^-4	0.92	UTR_5_PRIME CG13321	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9067552	X_9067552_SNP [dm3] X_9173519_SNP [dm6]	G	T	1.686e^-4	0.92	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14768761	2R_14768761_SNP [dm3] 2R_18881256_SNP [dm6]	T	C	1.696e^-4	0.92	INTRON sano
2L	6694038	2L_6694038_SNP [dm3] 2L_6694038_SNP [dm6]	T	A	1.700e^-4	0.92	INTRON Tsp
2L	6722549	2L_6722549_SNP [dm3] 2L_6722549_SNP [dm6]	T	C	1.705e^-4	0.92	INTRON homer	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	11244789	2R_11244789_SNP [dm3] 2R_15357284_SNP [dm6]	T	C	1.719e^-4	0.92	NON_SYNONYMOUS_CODING unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	11266988	2R_11266988_SNP [dm3] 2R_15379483_SNP [dm6]	C	T	1.730e^-4	0.92	INTRON dup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18997500	X_18997500_SNP [dm3] X_19103467_SNP [dm6]	T	A	1.742e^-4	0.92	INTERGENIC
3L	6954299	3L_6954299_SNP [dm3] 3L_6961199_SNP [dm6]	G	A	1.756e^-4	0.92	SYNONYMOUS_CODING sgl
3R	24341623	3R_24341623_SNP [dm3] 3R_28515901_SNP [dm6]	T	C	1.759e^-4	0.92	INTRON Dhc98D
2L	3241011	2L_3241011_SNP [dm3] 2L_3241011_SNP [dm6]	C	G	1.767e^-4	0.92	INTERGENIC
X	16155717	X_16155717_SNP [dm3] X_16261684_SNP [dm6]	C	A	1.769e^-4	0.92	INTERGENIC
X	14154044	X_14154044_SNP [dm3] X_14260011_SNP [dm6]	T	C	1.771e^-4	0.92	INTERGENIC
3L	9160590	3L_9160590_SNP [dm3] 3L_9167490_SNP [dm6]	T	G	1.782e^-4	0.92	INTRON Rdl
X	19371964	X_19371964_SNP [dm3] X_19477931_SNP [dm6]	G	A	1.784e^-4	0.92	SYNONYMOUS_CODING CG32533	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14791848	3R_14791848_SNP [dm3] 3R_18966126_SNP [dm6]	T	G	1.785e^-4	0.92	INTRON CG42613 & 1 other
3R	12383881	3R_12383881_SNP [dm3] 3R_16558159_SNP [dm6]	A	C	1.796e^-4	0.92	INTRON CG42342
3R	16903246	3R_16903246_SNP [dm3] 3R_21077524_SNP [dm6]	A	T	1.804e^-4	0.92	DOWNSTREAM dmrt93B INTRON HHEX
3R	23498550	3R_23498550_SNP [dm3] 3R_27672828_SNP [dm6]	A	T	1.808e^-4	0.92	INTRON unc80	TF binding site mE1_TFBS_chinmo
2L	7056123	2L_7056123_SNP [dm3] 2L_7056123_SNP [dm6]	G	A	1.809e^-4	0.92	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	13386479	3L_13386479_SNP [dm3] 3L_13393379_SNP [dm6]	G	T	1.829e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	6758075	2R_6758075_SNP [dm3] 2R_10870570_SNP [dm6]	T	A	1.829e^-4	0.92	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	19889233	2R_19889233_SNP [dm3] 2R_24001710_SNP [dm6]	G	C	1.838e^-4	0.92	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24739675	3R_24739675_SNP [dm3] 3R_28913953_SNP [dm6]	C	T	1.842e^-4	0.92	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4483311	2L_4483311_SNP [dm3] 2L_4483311_SNP [dm6]	G	T	1.846e^-4	0.92	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12014023	2R_12014023_SNP [dm3] 2R_16126518_SNP [dm6]	G	A	1.848e^-4	0.92	INTRON spin	TF binding site BDTNP1_TFBS_dl
3R	21254564	3R_21254564_SNP [dm3] 3R_25428842_SNP [dm6]	C	A	1.871e^-4	0.92	INTRON Fur1
3R	25066312	3R_25066312_SNP [dm3] 3R_29240590_SNP [dm6]	A	G	1.881e^-4	0.92	UTR_3_PRIME CG31445 UPSTREAM CG31427
3L	11350664	3L_11350664_SNP [dm3] 3L_11357564_SNP [dm6]	A	G	1.885e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	12136692	X_12136692_SNP [dm3] X_12242659_SNP [dm6]	C	T	1.892e^-4	0.92	INTRON Ten-a
3L	9873016	3L_9873016_SNP [dm3] 3L_9879916_SNP [dm6]	G	T	1.902e^-4	0.92	INTRON CG34382
2R	10766534	2R_10766534_SNP [dm3] 2R_14879029_SNP [dm6]	G	T	1.904e^-4	0.92	NON_SYNONYMOUS_CODING Cyp6a19 UTR_3_PRIME Cyp6a19 DOWNSTREAM Cyp6a9
2L	16301651	2L_16301651_SNP [dm3] 2L_16301651_SNP [dm6]	A	G	1.906e^-4	0.92	UTR_3_PRIME CG17328 DOWNSTREAM CG5869
3L	19947372	3L_19947372_SNP [dm3] 3L_19954272_SNP [dm6]	C	T	1.911e^-4	0.92	UPSTREAM CG42655 DOWNSTREAM CG42263 INTRON Ac76E & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	17874844	2R_17874844_SNP [dm3] 2R_21987339_SNP [dm6]	C	T	1.914e^-4	0.92	UTR_3_PRIME CG34370 UPSTREAM CG30401
3L	7711802	3L_7711802_SNP [dm3] 3L_7718702_SNP [dm6]	C	T	1.929e^-4	0.92	UPSTREAM CG12262 & 1 other INTRON CG32373
2L	5147387	2L_5147387_SNP [dm3] 2L_5147387_SNP [dm6]	T	C	1.929e^-4	0.92	INTRON Msp300
2L	15934457	2L_15934457_SNP [dm3] 2L_15934457_SNP [dm6]	C	T	1.931e^-4	0.92	INTRON beat-Ib
2R	19460869	2R_19460869_SNP [dm3] 2R_23573346_SNP [dm6]	C	T	1.931e^-4	0.92	INTRON apt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7306435	3L_7306435_SNP [dm3] 3L_7313335_SNP [dm6]	A	T	1.935e^-4	0.92	UPSTREAM unc-13-4A INTERGENIC
3L	10456350	3L_10456350_SNP [dm3] 3L_10463250_SNP [dm6]	A	C	1.942e^-4	0.92	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	14694409	2L_14694409_SNP [dm3] 2L_14694409_SNP [dm6]	G	A	1.943e^-4	0.92	INTERGENIC
3R	7598210	3R_7598210_SNP [dm3] 3R_11772488_SNP [dm6]	C	A	1.944e^-4	0.92	UPSTREAM l_3_neo38 INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25228555	3R_25228555_SNP [dm3] 3R_29402833_SNP [dm6]	T	C	1.950e^-4	0.92	INTRON Ptp99A
X	18728615	X_18728615_SNP [dm3] X_18834582_SNP [dm6]	C	T	1.973e^-4	0.92	INTRON Pvf1	TF binding site BDTNP1_TFBS_da
2R	18174061	2R_18174061_DEL [dm3] 2R_22286556_DEL [dm6]	CA	C	1.975e^-4	0.92	DOWNSTREAM dve INTERGENIC
3R	16903276	3R_16903276_SNP [dm3] 3R_21077554_SNP [dm6]	A	T	1.979e^-4	0.92	DOWNSTREAM dmrt93B INTRON HHEX
3R	12238318	3R_12238318_SNP [dm3] 3R_16412596_SNP [dm6]	C	T	1.980e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2L	6694026	2L_6694026_DEL [dm3] 2L_6694026_DEL [dm6]	ATTTTAC	A	1.982e^-4	0.92	INTRON Tsp
2R	16132460	2R_16132460_SNP [dm3] 2R_20244955_SNP [dm6]	C	A	1.986e^-4	0.92	DOWNSTREAM ppk6 INTRON CG11208	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
X	19224423	X_19224423_SNP [dm3] X_19330390_SNP [dm6]	G	C	1.988e^-4	0.92	INTRON nAChRalpha7
3R	16252598	3R_16252598_SNP [dm3] 3R_20426876_SNP [dm6]	G	C	1.990e^-4	0.92	INTRON Gfrl
2R	14768442	2R_14768442_SNP [dm3] 2R_18880937_SNP [dm6]	C	G	1.992e^-4	0.92	INTRON sano
3L	9873007	3L_9873007_DEL [dm3] 3L_9879907_DEL [dm6]	GGA	T	1.993e^-4	0.92	INTRON CG34382
2R	6725841	2R_6725841_SNP [dm3] 2R_10838336_SNP [dm6]	A	G	1.999e^-4	0.92	SYNONYMOUS_CODING CG7686 DOWNSTREAM CG30015	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13894366	3L_13894366_SNP [dm3] 3L_13901266_SNP [dm6]	A	T	1.999e^-4	0.92	INTRON dysc
X	7091931	X_7091931_SNP [dm3] X_7197898_SNP [dm6]	T	C	2.004e^-4	0.92	INTRON CR44357 & 1 other
2R	9236409	2R_9236409_SNP [dm3] 2R_13348904_SNP [dm6]	A	G	2.005e^-4	0.92	INTRON CR44206
X	4051066	X_4051066_SNP [dm3] X_4157033_SNP [dm6]	G	A	2.007e^-4	0.92	INTRON Fas2
3L	16818408	3L_16818408_SNP [dm3] 3L_16825308_SNP [dm6]	C	T	2.012e^-4	0.92	INTRON CG13024
2R	12584101	2R_12584101_SNP [dm3] 2R_16696596_SNP [dm6]	G	T	2.016e^-4	0.92	INTRON CG30463
X	10415153	X_10415153_SNP [dm3] X_10521120_SNP [dm6]	G	T	2.022e^-4	0.92	INTRON spri
3L	22889975	3L_22889975_SNP [dm3] 3L_22896875_SNP [dm6]	A	T	2.047e^-4	0.92	DOWNSTREAM CR44688 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15380611	3R_15380611_SNP [dm3] 3R_19554889_SNP [dm6]	G	A	2.063e^-4	0.92	SYNONYMOUS_CODING Dys	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13938263	3R_13938263_INS [dm3] 3R_18112541_INS [dm6]	C	CTTCGC	2.063e^-4	0.92	INTRON sr	TF binding site mE1_TFBS_HSA
3R	13938267	3R_13938267_SNP [dm3] 3R_18112545_SNP [dm6]	A	C	2.063e^-4	0.92	INTRON sr	TF binding site mE1_TFBS_HSA
3R	13938269	3R_13938269_SNP [dm3] 3R_18112547_SNP [dm6]	A	G	2.063e^-4	0.92	INTRON sr	TF binding site mE1_TFBS_HSA
2L	1291273	2L_1291273_SNP [dm3] 2L_1291273_SNP [dm6]	C	G	2.064e^-4	0.92	INTRON robo3
3R	14672672	3R_14672672_SNP [dm3] 3R_18846950_SNP [dm6]	C	A	2.075e^-4	0.92	INTRON CG18208
3R	10817185	3R_10817185_SNP [dm3] 3R_14991463_SNP [dm6]	C	T	2.076e^-4	0.92	INTERGENIC
3L	9865555	3L_9865555_SNP [dm3] 3L_9872455_SNP [dm6]	A	G	2.080e^-4	0.92	INTERGENIC
2L	8985091	2L_8985091_SNP [dm3] 2L_8985091_SNP [dm6]	A	C	2.082e^-4	0.92	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8985102	2L_8985102_SNP [dm3] 2L_8985102_SNP [dm6]	A	G	2.082e^-4	0.92	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20434973	X_20434973_SNP [dm3] X_20563946_SNP [dm6]	C	T	2.101e^-4	0.92	INTRON RunxB
X	13562404	X_13562404_SNP [dm3] X_13668371_SNP [dm6]	C	T	2.111e^-4	0.92	SYNONYMOUS_CODING CG11164 UPSTREAM Lig4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3672264	2L_3672264_SNP [dm3] 2L_3672264_SNP [dm6]	G	A	2.112e^-4	0.92	INTRON CG34340
2L	5012323	2L_5012323_SNP [dm3] 2L_5012323_SNP [dm6]	T	G	2.132e^-4	0.92	UTR_3_PRIME vkg DOWNSTREAM CG3887	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18997531	X_18997531_SNP [dm3] X_19103498_SNP [dm6]	G	A	2.142e^-4	0.92	INTERGENIC
3L	8690476	3L_8690476_DEL [dm3] 3L_8697376_DEL [dm6]	TT	T	2.160e^-4	0.92	INTERGENIC
2L	10716310	2L_10716310_SNP [dm3] 2L_10716310_SNP [dm6]	C	T	2.167e^-4	0.92	INTERGENIC
X	10415119	X_10415119_SNP [dm3] X_10521086_SNP [dm6]	G	A	2.181e^-4	0.92	INTRON spri
3L	1263251	3L_1263251_SNP [dm3] 3L_1263251_SNP [dm6]	A	G	2.189e^-4	0.92	INTRON CG9134
3L	8585160	3L_8585160_SNP [dm3] 3L_8592060_SNP [dm6]	C	G	2.192e^-4	0.92	NON_SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10143433	3R_10143433_SNP [dm3] 3R_14317711_SNP [dm6]	T	C	2.200e^-4	0.92	SYNONYMOUS_CODING pr-set7	TF binding site mE1_TFBS_chinmo
X	13856770	X_13856770_SNP [dm3] X_13962737_SNP [dm6]	A	C	2.200e^-4	0.92	INTRON mamo
2R	11458435	2R_11458435_SNP [dm3] 2R_15570930_SNP [dm6]	G	A	2.202e^-4	0.92	SYNONYMOUS_CODING Cdk5 UPSTREAM CG30466 INTRON CG30466	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	17773099	3R_17773099_SNP [dm3] 3R_21947377_SNP [dm6]	T	C	2.208e^-4	0.92	INTERGENIC
X	6941114	X_6941114_SNP [dm3] X_7047081_SNP [dm6]	C	T	2.213e^-4	0.92	INTRON CG12541	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12912425	2L_12912425_SNP [dm3] 2L_12912425_SNP [dm6]	T	C	2.222e^-4	0.92	UPSTREAM ACXC INTERGENIC
3R	15202567	3R_15202567_SNP [dm3] 3R_19376845_SNP [dm6]	A	G	2.226e^-4	0.92	SYNONYMOUS_CODING CG31245 UPSTREAM CG31404 INTRON Ino80	TF binding site mE1_TFBS_sens
3L	9865381	3L_9865381_SNP [dm3] 3L_9872281_SNP [dm6]	A	T	2.228e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	12238491	3R_12238491_SNP [dm3] 3R_16412769_SNP [dm6]	T	C	2.229e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
X	12620895	X_12620895_SNP [dm3] X_12726862_SNP [dm6]	C	T	2.234e^-4	0.92	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl
3R	25395702	3R_25395702_SNP [dm3] 3R_29569980_SNP [dm6]	C	T	2.236e^-4	0.92	INTERGENIC
3L	17239706	3L_17239706_SNP [dm3] 3L_17246606_SNP [dm6]	A	G	2.238e^-4	0.92	INTRON CR43870
2R	14856504	2R_14856504_SNP [dm3] 2R_18968999_SNP [dm6]	C	T	2.239e^-4	0.92	DOWNSTREAM prod INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9517114	2R_9517114_SNP [dm3] 2R_13629609_SNP [dm6]	T	A	2.242e^-4	0.92	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8774657	3L_8774657_SNP [dm3] 3L_8781557_SNP [dm6]	C	A	2.249e^-4	0.92	INTRON Fhos
2R	8428754	2R_8428754_SNP [dm3] 2R_12541249_SNP [dm6]	A	G	2.264e^-4	0.92	INTRON fra	TF binding site mE1_TFBS_cad
3L	17522946	3L_17522946_SNP [dm3] 3L_17529846_SNP [dm6]	G	A	2.270e^-4	0.92	START_GAINED Edc3 UTR_5_PRIME Edc3 UPSTREAM Nedd4 DOWNSTREAM CR45165	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1568187	3L_1568187_SNP [dm3] 3L_1568187_SNP [dm6]	A	T	2.279e^-4	0.92	UPSTREAM CG12004 DOWNSTREAM CG12003 INTRON CG7879	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	6113918	X_6113918_SNP [dm3] X_6219885_SNP [dm6]	A	G	2.290e^-4	0.92	UPSTREAM Efr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	2423725	2L_2423725_SNP [dm3] 2L_2423725_SNP [dm6]	A	G	2.292e^-4	0.92	UTR_3_PRIME CG9886 DOWNSTREAM CG9886	TF binding site mE1_TFBS_chinmo
2R	14188741	2R_14188741_SNP [dm3] 2R_18301236_SNP [dm6]	C	A	2.293e^-4	0.92	INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18615659	2L_18615659_SNP [dm3] 2L_18615659_SNP [dm6]	G	C	2.306e^-4	0.92	NON_SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10854995	2R_10854995_SNP [dm3] 2R_14967490_SNP [dm6]	A	T	2.315e^-4	0.92	INTRON ckn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9502181	3L_9502181_INS [dm3] 3L_9509081_INS [dm6]	C	CC	2.316e^-4	0.92	DOWNSTREAM RpS9 INTRON CG3408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16889557	3R_16889557_DEL [dm3] 3R_21063835_DEL [dm6]	AA	A	2.317e^-4	0.92	SPLICE_SITE_REGION Cortactin INTRON Cortactin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	1768089	3L_1768089_SNP [dm3] 3L_1768089_SNP [dm6]	A	G	2.323e^-4	0.92	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7728703	2L_7728703_SNP [dm3] 2L_7728703_SNP [dm6]	A	G	2.324e^-4	0.92	SYNONYMOUS_CODING CG13796
2L	14470003	2L_14470003_SNP [dm3] 2L_14470003_SNP [dm6]	T	A	2.327e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6386520	2R_6386520_SNP [dm3] 2R_10499015_SNP [dm6]	A	T	2.331e^-4	0.92	INTRON lola
2R	17418263	2R_17418263_INS [dm3] 2R_21530758_INS [dm6]	T	TT	2.333e^-4	0.92	DOWNSTREAM CR44725 INTRON Egfr	TF binding site BDTNP1_TFBS_twi
3L	18729806	3L_18729806_SNP [dm3] 3L_18736706_SNP [dm6]	T	C	2.334e^-4	0.92	INTERGENIC
3R	23883088	3R_23883088_SNP [dm3] 3R_28057366_SNP [dm6]	A	G	2.337e^-4	0.92	INTRON CG34362
2L	12719769	2L_12719769_SNP [dm3] 2L_12719769_SNP [dm6]	C	A	2.348e^-4	0.92	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6964566	3L_6964566_SNP [dm3] 3L_6971466_SNP [dm6]	C	T	2.348e^-4	0.92	SYNONYMOUS_CODING CG9953 DOWNSTREAM CG10063
3L	15921515	3L_15921515_SNP [dm3] 3L_15928415_SNP [dm6]	A	C	2.352e^-4	0.92	INTRON Pka-C3
2L	2420351	2L_2420351_SNP [dm3] 2L_2420351_SNP [dm6]	C	T	2.354e^-4	0.92	UPSTREAM CG34447 & 1 other INTERGENIC
3R	22883245	3R_22883245_SNP [dm3] 3R_27057523_SNP [dm6]	T	G	2.356e^-4	0.92	DOWNSTREAM Nep5 & 1 other INTRON RYa-R
3R	20527271	3R_20527271_SNP [dm3] 3R_24701549_SNP [dm6]	A	G	2.359e^-4	0.92	INTRON slo
3R	24008292	3R_24008292_SNP [dm3] 3R_28182570_SNP [dm6]	T	C	2.359e^-4	0.92	INTRON CG34354
2R	11661872	2R_11661872_SNP [dm3] 2R_15774367_SNP [dm6]	C	T	2.360e^-4	0.92	INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8961972	X_8961972_SNP [dm3] X_9067939_SNP [dm6]	G	A	2.364e^-4	0.92	UTR_5_PRIME CG15365
2L	5147371	2L_5147371_SNP [dm3] 2L_5147371_SNP [dm6]	G	A	2.372e^-4	0.92	INTRON Msp300
3R	16903266	3R_16903266_SNP [dm3] 3R_21077544_SNP [dm6]	G	A	2.376e^-4	0.92	DOWNSTREAM dmrt93B INTRON HHEX
3R	11147924	3R_11147924_SNP [dm3] 3R_15322202_SNP [dm6]	T	C	2.376e^-4	0.92	SYNONYMOUS_CODING ear	TF binding site mE1_TFBS_chinmo
3L	7771816	3L_7771816_SNP [dm3] 3L_7778716_SNP [dm6]	A	T	2.379e^-4	0.92	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_chinmo
2R	14575455	2R_14575455_SNP [dm3] 2R_18687950_SNP [dm6]	A	T	2.381e^-4	0.92	UPSTREAM Sik3 INTRON CG42855	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13353384	3L_13353384_SNP [dm3] 3L_13360284_SNP [dm6]	A	T	2.390e^-4	0.92	INTERGENIC
2R	14868878	2R_14868878_SNP [dm3] 2R_18981373_SNP [dm6]	C	A	2.400e^-4	0.92	INTERGENIC
2L	15775824	2L_15775824_SNP [dm3] 2L_15775824_SNP [dm6]	T	C	2.401e^-4	0.92	DOWNSTREAM CG43760 INTERGENIC
3L	14737476	3L_14737476_SNP [dm3] 3L_14744376_SNP [dm6]	A	G	2.403e^-4	0.92	NON_SYNONYMOUS_CODING ome
3R	14455614	3R_14455614_SNP [dm3] 3R_18629892_SNP [dm6]	A	G	2.408e^-4	0.92	SYNONYMOUS_CODING CG14301 INTRON qin
3L	13058364	3L_13058364_SNP [dm3] 3L_13065264_SNP [dm6]	G	T	2.409e^-4	0.92	INTERGENIC
3L	14850500	3L_14850500_SNP [dm3] 3L_14857400_SNP [dm6]	G	A	2.411e^-4	0.92	INTRON CG17839
2R	17886860	2R_17886860_SNP [dm3] 2R_21999355_SNP [dm6]	G	T	2.412e^-4	0.92	INTRON CG34370
3L	15917252	3L_15917252_SNP [dm3] 3L_15924152_SNP [dm6]	T	A	2.420e^-4	0.92	INTRON sff	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9864938	3L_9864938_SNP [dm3] 3L_9871838_SNP [dm6]	A	G	2.423e^-4	0.92	INTERGENIC
X	19493286	X_19493286_SNP [dm3] X_19599253_SNP [dm6]	C	T	2.428e^-4	0.92	UTR_3_PRIME RpS10b DOWNSTREAM CG14220 & 1 other
3R	8066592	3R_8066592_DEL [dm3] 3R_12240870_DEL [dm6]	CGAACTTAATCAACTTTTC...	C	2.429e^-4	0.92	DOWNSTREAM CR44036 INTERGENIC	TF binding site mE1_TFBS_inv
3R	21636906	3R_21636906_SNP [dm3] 3R_25811184_SNP [dm6]	A	C	2.433e^-4	0.92	UTR_5_PRIME CG5024 UPSTREAM CG17770 & 1 other
X	14665841	X_14665841_SNP [dm3] X_14771808_SNP [dm6]	A	G	2.436e^-4	0.92	INTERGENIC
3R	7890085	3R_7890085_SNP [dm3] 3R_12064363_SNP [dm6]	A	G	2.437e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	11945188	3R_11945188_SNP [dm3] 3R_16119466_SNP [dm6]	C	G	2.437e^-4	0.92	INTRON Sb
2R	9359383	2R_9359383_SNP [dm3] 2R_13471878_SNP [dm6]	G	T	2.444e^-4	0.92	INTRON arr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12221592	X_12221592_SNP [dm3] X_12327559_SNP [dm6]	C	T	2.451e^-4	0.92	SYNONYMOUS_CODING Ten-a
3L	16685258	3L_16685258_SNP [dm3] 3L_16692158_SNP [dm6]	C	G	2.452e^-4	0.92	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
2R	9236704	2R_9236704_SNP [dm3] 2R_13349199_SNP [dm6]	A	C	2.453e^-4	0.92	INTRON CR44206	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17933672	3L_17933672_SNP [dm3] 3L_17940572_SNP [dm6]	T	A	2.454e^-4	0.92	INTRON CG43174
X	10588789	X_10588789_SNP [dm3] X_10694756_SNP [dm6]	G	T	2.455e^-4	0.92	INTRON X11Lbeta
3R	12249124	3R_12249124_SNP [dm3] 3R_16423402_SNP [dm6]	G	A	2.463e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	7760128	3R_7760128_SNP [dm3] 3R_11934406_SNP [dm6]	C	T	2.466e^-4	0.92	DOWNSTREAM CG14731 INTRON Cad87A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12583099	2R_12583099_SNP [dm3] 2R_16695594_SNP [dm6]	A	G	2.466e^-4	0.92	INTRON CG30463
2R	9072078	2R_9072078_SNP [dm3] 2R_13184573_SNP [dm6]	A	G	2.470e^-4	0.92	DOWNSTREAM Kdm4B INTRON CG17724 & 2 others
2R	9155746	2R_9155746_DEL [dm3] 2R_13268241_DEL [dm6]	GT	G	2.473e^-4	0.92	UTR_3_PRIME Dh31-R
3L	14946337	3L_14946337_SNP [dm3] 3L_14953237_SNP [dm6]	G	A	2.475e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	9873004	3L_9873004_SNP [dm3] 3L_9879904_SNP [dm6]	C	T	2.481e^-4	0.92	INTRON CG34382
2R	20106889	2R_20106889_SNP [dm3] 2R_24219366_SNP [dm6]	C	T	2.487e^-4	0.92	INTRON CG30419
2R	20106955	2R_20106955_SNP [dm3] 2R_24219432_SNP [dm6]	G	A	2.487e^-4	0.92	INTRON CG30419
3R	9466765	3R_9466765_SNP [dm3] 3R_13641043_SNP [dm6]	A	G	2.488e^-4	0.92	UTR_3_PRIME sqd INTRON sqd
2L	3057268	2L_3057268_SNP [dm3] 2L_3057268_SNP [dm6]	T	C	2.494e^-4	0.92	INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19224457	X_19224457_DEL [dm3] X_19330424_DEL [dm6]	TGGGAATT	T	2.505e^-4	0.92	INTRON nAChRalpha7
X	17508440	X_17508440_SNP [dm3] X_17614407_SNP [dm6]	A	T	2.507e^-4	0.92	INTERGENIC
3L	1235464	3L_1235464_SNP [dm3] 3L_1235464_SNP [dm6]	G	A	2.511e^-4	0.92	UPSTREAM CR45747 & 1 other DOWNSTREAM CG33966 INTERGENIC	TF binding site mE1_TFBS_Trl
X	3207337	X_3207337_SNP [dm3] X_3313304_SNP [dm6]	A	T	2.516e^-4	0.92	UPSTREAM dnc DOWNSTREAM CR44886 INTRON dnc
3L	7272806	3L_7272806_SNP [dm3] 3L_7279706_SNP [dm6]	G	C	2.518e^-4	0.92	INTRON unc-13-4A
2L	15775835	2L_15775835_SNP [dm3] 2L_15775835_SNP [dm6]	T	C	2.520e^-4	0.92	DOWNSTREAM CG43760 INTERGENIC
3R	26331619	3R_26331619_SNP [dm3] 3R_30505897_SNP [dm6]	T	A	2.520e^-4	0.92	UPSTREAM CG15539 & 2 others INTERGENIC
3R	2773227	3R_2773227_SNP [dm3] 3R_6947505_SNP [dm6]	G	T	2.525e^-4	0.92	INTRON Antp	TF binding site mE1_TFBS_cad
2R	10629230	2R_10629230_SNP [dm3] 2R_14741725_SNP [dm6]	G	A	2.527e^-4	0.92	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9067506	X_9067506_SNP [dm3] X_9173473_SNP [dm6]	T	C	2.532e^-4	0.92	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12250921	3R_12250921_SNP [dm3] 3R_16425199_SNP [dm6]	C	T	2.537e^-4	0.92	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
X	10742616	X_10742616_SNP [dm3] X_10848583_SNP [dm6]	A	G	2.540e^-4	0.92	UPSTREAM CG2202 DOWNSTREAM CG17333 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	20814039	2L_20814039_SNP [dm3] 2L_20814039_SNP [dm6]	C	A	2.544e^-4	0.92	UTR_3_PRIME CG9328 DOWNSTREAM CG33322 & 1 other
3L	9161604	3L_9161604_SNP [dm3] 3L_9168504_SNP [dm6]	T	G	2.544e^-4	0.92	INTRON Rdl
3L	14813572	3L_14813572_SNP [dm3] 3L_14820472_SNP [dm6]	C	T	2.545e^-4	0.92	INTRON CG17839
3R	19617953	3R_19617953_SNP [dm3] 3R_23792231_SNP [dm6]	T	C	2.548e^-4	0.92	SPLICE_SITE_REGION mbc INTRON mbc
3L	14685490	3L_14685490_SNP [dm3] 3L_14692390_SNP [dm6]	T	C	2.556e^-4	0.92	DOWNSTREAM CG13477 INTRON ome
3R	12238347	3R_12238347_SNP [dm3] 3R_16412625_SNP [dm6]	C	T	2.566e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
2R	9181107	2R_9181107_SNP [dm3] 2R_13293602_SNP [dm6]	G	A	2.567e^-4	0.92	INTRON Dh31-R
2R	9522028	2R_9522028_SNP [dm3] 2R_13634523_SNP [dm6]	G	T	2.568e^-4	0.92	INTRON fas	TF binding site BDTNP1_TFBS_dl
3R	15507576	3R_15507576_SNP [dm3] 3R_19681854_SNP [dm6]	C	T	2.568e^-4	0.92	INTRON Naam
3L	15394449	3L_15394449_SNP [dm3] 3L_15401349_SNP [dm6]	C	T	2.586e^-4	0.92	INTERGENIC
2L	18480912	2L_18480912_SNP [dm3] 2L_18480912_SNP [dm6]	G	A	2.589e^-4	0.92	INTRON CG10283	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9522005	2R_9522005_SNP [dm3] 2R_13634500_SNP [dm6]	A	G	2.593e^-4	0.92	INTRON fas	TF binding site BDTNP1_TFBS_dl
3L	21421813	3L_21421813_SNP [dm3] 3L_21428713_SNP [dm6]	T	A	2.594e^-4	0.92	INTRON barc & 1 other
3L	15266421	3L_15266421_SNP [dm3] 3L_15273321_SNP [dm6]	C	A	2.596e^-4	0.92	INTERGENIC
3R	24739635	3R_24739635_SNP [dm3] 3R_28913913_SNP [dm6]	A	G	2.599e^-4	0.92	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9998255	2L_9998255_SNP [dm3] 2L_9998255_SNP [dm6]	A	G	2.608e^-4	0.92	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
X	8140431	X_8140431_SNP [dm3] X_8246398_SNP [dm6]	C	T	2.613e^-4	0.92	SYNONYMOUS_CODING Trxr-1	TF binding site mE1_TFBS_chinmo
3R	16865727	3R_16865727_SNP [dm3] 3R_21040005_SNP [dm6]	A	G	2.625e^-4	0.92	INTRON Dhc93AB
3R	16865736	3R_16865736_SNP [dm3] 3R_21040014_SNP [dm6]	A	T	2.625e^-4	0.92	INTRON Dhc93AB
3L	14737509	3L_14737509_SNP [dm3] 3L_14744409_SNP [dm6]	G	T	2.626e^-4	0.92	NON_SYNONYMOUS_CODING ome
2R	16747757	2R_16747757_SNP [dm3] 2R_20860252_SNP [dm6]	T	A	2.627e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1046357	2L_1046357_SNP [dm3] 2L_1046357_SNP [dm6]	G	C	2.642e^-4	0.92	INTRON IA-2
X	11084158	X_11084158_SNP [dm3] X_11190125_SNP [dm6]	C	A	2.666e^-4	0.92	INTERGENIC
3R	26121061	3R_26121061_SNP [dm3] 3R_30295339_SNP [dm6]	G	C	2.671e^-4	0.92	INTRON hdc
2L	5135116	2L_5135116_SNP [dm3] 2L_5135116_SNP [dm6]	C	T	2.671e^-4	0.92	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	16903271	3R_16903271_INS [dm3] 3R_21077549_INS [dm6]	T	TTTCG	2.672e^-4	0.92	DOWNSTREAM dmrt93B INTRON HHEX
2L	2531491	2L_2531491_INS [dm3] 2L_2531491_INS [dm6]	T	TT	2.673e^-4	0.92	INTERGENIC
3L	14835096	3L_14835096_DEL [dm3] 3L_14841996_DEL [dm6]	GG	A	2.676e^-4	0.92	INTRON CG17839
2L	2424531	2L_2424531_SNP [dm3] 2L_2424531_SNP [dm6]	G	C	2.682e^-4	0.92	UTR_3_PRIME CG9886 UPSTREAM CG44139
3R	17209179	3R_17209179_SNP [dm3] 3R_21383457_SNP [dm6]	T	G	2.687e^-4	0.92	INTERGENIC
3L	3453928	3L_3453928_SNP [dm3] 3L_3453928_SNP [dm6]	C	T	2.693e^-4	0.92	INTRON eIF5B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12925608	2L_12925608_SNP [dm3] 2L_12925608_SNP [dm6]	G	T	2.694e^-4	0.92	UPSTREAM ACXE DOWNSTREAM ACXA INTERGENIC
3R	12253131	3R_12253131_SNP [dm3] 3R_16427409_SNP [dm6]	G	A	2.699e^-4	0.92	UPSTREAM CR45631 INTERGENIC	regulatory region REDfly_CRMs
2R	16861672	2R_16861672_SNP [dm3] 2R_20974167_SNP [dm6]	G	C	2.701e^-4	0.92	UPSTREAM CG15649 INTERGENIC
3R	12252067	3R_12252067_SNP [dm3] 3R_16426345_SNP [dm6]	A	C	2.701e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs
3R	1723407	3R_1723407_SNP [dm3] 3R_5897685_SNP [dm6]	G	A	2.707e^-4	0.92	INTRON CG34113	TF binding site BDTNP1_TFBS_twi
2L	13716126	2L_13716126_SNP [dm3] 2L_13716126_SNP [dm6]	A	G	2.710e^-4	0.92	INTRON CG31814
2L	2421553	2L_2421553_SNP [dm3] 2L_2421553_SNP [dm6]	G	A	2.710e^-4	0.92	NON_SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9873001	3L_9873001_SNP [dm3] 3L_9879901_SNP [dm6]	T	A	2.711e^-4	0.92	INTRON CG34382
3L	7457515	3L_7457515_SNP [dm3] 3L_7464415_SNP [dm6]	C	A	2.714e^-4	0.92	INTERGENIC
X	5249309	X_5249309_SNP [dm3] X_5355276_SNP [dm6]	C	A	2.730e^-4	0.92	INTRON SK
2L	9770876	2L_9770876_SNP [dm3] 2L_9770876_SNP [dm6]	A	C	2.740e^-4	0.92	DOWNSTREAM ppk16 & 1 other INTRON ppk18
3R	10814337	3R_10814337_SNP [dm3] 3R_14988615_SNP [dm6]	T	A	2.740e^-4	0.92	INTERGENIC
2L	16301820	2L_16301820_SNP [dm3] 2L_16301820_SNP [dm6]	C	T	2.741e^-4	0.92	UTR_3_PRIME CG5869 DOWNSTREAM CG17328
3L	9864553	3L_9864553_SNP [dm3] 3L_9871453_SNP [dm6]	A	G	2.746e^-4	0.92	DOWNSTREAM CG8108 INTERGENIC
2L	9299247	2L_9299247_SNP [dm3] 2L_9299247_SNP [dm6]	T	G	2.754e^-4	0.92	UTR_3_PRIME Ggamma30A
2L	11246328	2L_11246328_DEL [dm3] 2L_11246328_DEL [dm6]	TTAT	T	2.755e^-4	0.92	INTRON ab	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16593332	X_16593332_SNP [dm3] X_16699299_SNP [dm6]	G	T	2.757e^-4	0.92	UTR_3_PRIME CG9676 INTRON CG4678
3L	15936937	3L_15936937_SNP [dm3] 3L_15943837_SNP [dm6]	C	A	2.762e^-4	0.92	INTRON Pka-C3
3R	24339456	3R_24339456_SNP [dm3] 3R_28513734_SNP [dm6]	G	T	2.766e^-4	0.92	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15921544	3L_15921544_SNP [dm3] 3L_15928444_SNP [dm6]	G	T	2.768e^-4	0.92	INTRON Pka-C3
X	792722	X_792722_INS [dm3] X_898689_INS [dm6]	T	TG	2.769e^-4	0.92	INTRON CG43867
3L	9865383	3L_9865383_SNP [dm3] 3L_9872283_SNP [dm6]	G	T	2.770e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	13645827	2R_13645827_SNP [dm3] 2R_17758322_SNP [dm6]	C	T	2.776e^-4	0.92	SYNONYMOUS_CODING HLH54F	TF binding site BDTNP1_TFBS_twi
2R	13901303	2R_13901303_SNP [dm3] 2R_18013798_SNP [dm6]	A	G	2.778e^-4	0.92	INTERGENIC
3R	11585737	3R_11585737_SNP [dm3] 3R_15760015_SNP [dm6]	T	C	2.779e^-4	0.92	INTERGENIC
2R	12470586	2R_12470586_SNP [dm3] 2R_16583081_SNP [dm6]	C	T	2.782e^-4	0.92	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20724740	3R_20724740_SNP [dm3] 3R_24899018_SNP [dm6]	G	C	2.786e^-4	0.92	SYNONYMOUS_CODING CG13643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18609529	2L_18609529_SNP [dm3] 2L_18609529_SNP [dm6]	A	G	2.795e^-4	0.92	UTR_3_PRIME CG10333 DOWNSTREAM Atac2
3L	11100939	3L_11100939_SNP [dm3] 3L_11107839_SNP [dm6]	A	G	2.802e^-4	0.92	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
2R	6094149	2R_6094149_SNP [dm3] 2R_10206644_SNP [dm6]	A	G	2.813e^-4	0.92	UTR_3_PRIME Hr46 & 1 other
X	16878092	X_16878092_SNP [dm3] X_16984059_SNP [dm6]	T	A	2.818e^-4	0.92	INTRON CG45002
3R	24339497	3R_24339497_INS [dm3] 3R_28513775_INS [dm6]	G	GAAGGG	2.819e^-4	0.92	INTRON Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21648438	3R_21648438_SNP [dm3] 3R_25822716_SNP [dm6]	T	C	2.821e^-4	0.92	DOWNSTREAM CR44949 INTERGENIC
2L	961469	2L_961469_SNP [dm3] 2L_961469_SNP [dm6]	A	C	2.822e^-4	0.92	INTERGENIC
3R	16903254	3R_16903254_SNP [dm3] 3R_21077532_SNP [dm6]	C	G	2.824e^-4	0.92	DOWNSTREAM dmrt93B INTRON HHEX
3R	7337052	3R_7337052_SNP [dm3] 3R_11511330_SNP [dm6]	T	C	2.828e^-4	0.92	INTERGENIC
3L	20716385	3L_20716385_SNP [dm3] 3L_20723285_SNP [dm6]	A	T	2.836e^-4	0.92	INTERGENIC
3L	10526815	3L_10526815_SNP [dm3] 3L_10533715_SNP [dm6]	T	A	2.837e^-4	0.92	INTRON A2bp1
3L	1848553	3L_1848553_SNP [dm3] 3L_1848553_SNP [dm6]	G	A	2.848e^-4	0.92	INTERGENIC
2L	756112	2L_756112_SNP [dm3] 2L_756112_SNP [dm6]	T	G	2.854e^-4	0.92	INTRON GABA-B-R3
3R	18589114	3R_18589114_SNP [dm3] 3R_22763392_SNP [dm6]	T	C	2.860e^-4	0.92	SYNONYMOUS_CODING CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_sens
X	16982188	X_16982188_SNP [dm3] X_17088155_SNP [dm6]	C	A	2.863e^-4	0.92	UPSTREAM CG8945 INTERGENIC
3R	11585749	3R_11585749_SNP [dm3] 3R_15760027_SNP [dm6]	A	G	2.866e^-4	0.92	INTERGENIC
3L	9864212	3L_9864212_INS [dm3] 3L_9871112_INS [dm6]	G	GTAATGTATA	2.866e^-4	0.92	DOWNSTREAM CG8108 INTERGENIC
2R	9353426	2R_9353426_SNP [dm3] 2R_13465921_SNP [dm6]	A	T	2.906e^-4	0.92	INTRON arr
2R	14598417	2R_14598417_SNP [dm3] 2R_18710912_SNP [dm6]	T	C	2.909e^-4	0.92	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16903270	3R_16903270_SNP [dm3] 3R_21077548_SNP [dm6]	T	A	2.914e^-4	0.92	DOWNSTREAM dmrt93B INTRON HHEX
3R	25274985	3R_25274985_SNP [dm3] 3R_29449263_SNP [dm6]	A	G	2.917e^-4	0.92	INTRON Ptp99A
3R	12249724	3R_12249724_INS [dm3] 3R_16424002_INS [dm6]	G	GCC	2.927e^-4	0.92	DOWNSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	15389082	3L_15389082_SNP [dm3] 3L_15395982_SNP [dm6]	C	T	2.942e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14437563	3L_14437563_SNP [dm3] 3L_14444463_SNP [dm6]	A	G	2.949e^-4	0.92	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	7749808	3L_7749808_SNP [dm3] 3L_7756708_SNP [dm6]	T	A	2.951e^-4	0.92	UTR_5_PRIME CG32373 INTRON CG32373
2L	1566596	2L_1566596_SNP [dm3] 2L_1566596_SNP [dm6]	A	G	2.953e^-4	0.92	INTRON haf
X	16534931	X_16534931_SNP [dm3] X_16640898_SNP [dm6]	G	T	2.954e^-4	0.92	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14597821	2R_14597821_SNP [dm3] 2R_18710316_SNP [dm6]	G	C	2.962e^-4	0.92	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
3R	20734184	3R_20734184_SNP [dm3] 3R_24908462_SNP [dm6]	C	T	2.972e^-4	0.92	INTERGENIC
2L	16219790	2L_16219790_SNP [dm3] 2L_16219790_SNP [dm6]	C	T	2.994e^-4	0.92	INTERGENIC
X	4737824	X_4737824_SNP [dm3] X_4843791_SNP [dm6]	G	A	2.996e^-4	0.92	INTRON CG42594
3L	1699690	3L_1699690_SNP [dm3] 3L_1699690_SNP [dm6]	G	C	2.998e^-4	0.92	INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	11247823	2R_11247823_SNP [dm3] 2R_15360318_SNP [dm6]	C	T	3.000e^-4	0.92	INTRON unc-5
3L	17285822	3L_17285822_SNP [dm3] 3L_17292722_SNP [dm6]	C	A	3.001e^-4	0.92	INTERGENIC
2L	11307100	2L_11307100_SNP [dm3] 2L_11307100_SNP [dm6]	A	G	3.012e^-4	0.92	UPSTREAM CR43721 INTERGENIC
2L	11307108	2L_11307108_DEL [dm3] 2L_11307108_DEL [dm6]	TC	A	3.012e^-4	0.92	UPSTREAM CR43721 INTERGENIC
3L	4327725	3L_4327725_SNP [dm3] 3L_4327725_SNP [dm6]	A	G	3.018e^-4	0.92	INTRON Cip4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16678240	2R_16678240_SNP [dm3] 2R_20790735_SNP [dm6]	C	T	3.025e^-4	0.92	SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
3R	18746273	3R_18746273_SNP [dm3] 3R_22920551_SNP [dm6]	C	A	3.028e^-4	0.92	INTRON klg
X	802633	X_802633_SNP [dm3] X_908600_SNP [dm6]	T	C	3.037e^-4	0.92	INTRON CG43867	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	9451386	2R_9451386_SNP [dm3] 2R_13563881_SNP [dm6]	C	A	3.039e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2R	9451405	2R_9451405_SNP [dm3] 2R_13563900_SNP [dm6]	C	T	3.039e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2L	1567182	2L_1567182_DEL [dm3] 2L_1567182_DEL [dm6]	AA	A	3.040e^-4	0.92	INTRON haf
2L	14469464	2L_14469464_SNP [dm3] 2L_14469464_SNP [dm6]	T	C	3.050e^-4	0.92	INTERGENIC
2R	11177051	2R_11177051_SNP [dm3] 2R_15289546_SNP [dm6]	T	C	3.059e^-4	0.92	INTRON Trpm
2R	7116392	2R_7116392_SNP [dm3] 2R_11228887_SNP [dm6]	C	A	3.064e^-4	0.92	INTRON metro	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	18615686	2L_18615686_SNP [dm3] 2L_18615686_SNP [dm6]	A	C	3.067e^-4	0.92	NON_SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12921405	3R_12921405_DEL [dm3] 3R_17095683_DEL [dm6]	TGTAT	T	3.071e^-4	0.92	UPSTREAM cher INTRON cher
3L	7981787	3L_7981787_SNP [dm3] 3L_7988687_SNP [dm6]	C	T	3.072e^-4	0.92	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	15202515	3R_15202515_SNP [dm3] 3R_19376793_SNP [dm6]	C	T	3.076e^-4	0.92	UPSTREAM CG31404 INTRON Ino80 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7330188	X_7330188_SNP [dm3] X_7436155_SNP [dm6]	G	A	3.079e^-4	0.92	INTERGENIC
3R	12929277	3R_12929277_SNP [dm3] 3R_17103555_SNP [dm6]	G	C	3.100e^-4	0.92	INTRON cher
3R	12249728	3R_12249728_SNP [dm3] 3R_16424006_SNP [dm6]	T	G	3.102e^-4	0.92	DOWNSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	14508145	2R_14508145_SNP [dm3] 2R_18620640_SNP [dm6]	G	C	3.105e^-4	0.92	UTR_3_PRIME Atg7 UPSTREAM CG5335
X	8062946	X_8062946_SNP [dm3] X_8168913_SNP [dm6]	T	G	3.117e^-4	0.92	INTRON CG2278	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16301629	2L_16301629_SNP [dm3] 2L_16301629_SNP [dm6]	T	C	3.125e^-4	0.92	UTR_3_PRIME CG17328 DOWNSTREAM CG5869
X	3330569	X_3330569_SNP [dm3] X_3436536_SNP [dm6]	C	T	3.129e^-4	0.92	UPSTREAM CG14269 INTRON CR44999 & 1 other
X	4050995	X_4050995_SNP [dm3] X_4156962_SNP [dm6]	C	T	3.130e^-4	0.92	INTRON Fas2
3L	14828389	3L_14828389_SNP [dm3] 3L_14835289_SNP [dm6]	A	G	3.136e^-4	0.92	INTRON CG17839
3L	516092	3L_516092_SNP [dm3] 3L_516092_SNP [dm6]	T	C	3.137e^-4	0.92	INTRON klar
X	9838358	X_9838358_SNP [dm3] X_9944325_SNP [dm6]	A	C	3.139e^-4	0.92	INTERGENIC
2L	20812115	2L_20812115_INS [dm3] 2L_20812115_INS [dm6]	T	TA	3.141e^-4	0.92	INTRON CG9328
2R	11470728	2R_11470728_SNP [dm3] 2R_15583223_SNP [dm6]	A	T	3.145e^-4	0.92	INTERGENIC
3R	6808895	3R_6808895_SNP [dm3] 3R_10983173_SNP [dm6]	A	G	3.169e^-4	0.92	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9134214	3L_9134214_SNP [dm3] 3L_9141114_SNP [dm6]	A	G	3.176e^-4	0.92	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10912703	3L_10912703_SNP [dm3] 3L_10919603_SNP [dm6]	G	A	3.182e^-4	0.92	INTERGENIC
3L	22413282	3L_22413282_DEL [dm3] 3L_22420182_DEL [dm6]	TTA	T	3.182e^-4	0.92	DOWNSTREAM CR45237 INTERGENIC
2L	5087414	2L_5087414_SNP [dm3] 2L_5087414_SNP [dm6]	G	C	3.186e^-4	0.92	INTRON pgant5
2L	20783488	2L_20783488_SNP [dm3] 2L_20783488_SNP [dm6]	A	T	3.187e^-4	0.92	DOWNSTREAM cad INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16819031	3L_16819031_SNP [dm3] 3L_16825931_SNP [dm6]	C	A	3.193e^-4	0.92	INTRON CG13024
2R	9522011	2R_9522011_SNP [dm3] 2R_13634506_SNP [dm6]	G	C	3.193e^-4	0.92	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	10631374	2R_10631374_SNP [dm3] 2R_14743869_SNP [dm6]	G	A	3.193e^-4	0.92	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7438737	2R_7438737_SNP [dm3] 2R_11551232_SNP [dm6]	T	C	3.195e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14470535	3L_14470535_SNP [dm3] 3L_14477435_SNP [dm6]	G	A	3.198e^-4	0.92	UPSTREAM bbg INTRON bbg	TF binding site mE1_TFBS_Trl
2R	8185745	2R_8185745_SNP [dm3] 2R_12298240_SNP [dm6]	T	A	3.208e^-4	0.92	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
3L	1455074	3L_1455074_SNP [dm3] 3L_1455074_SNP [dm6]	A	G	3.208e^-4	0.92	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7056047	2L_7056047_SNP [dm3] 2L_7056047_SNP [dm6]	T	A	3.210e^-4	0.92	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14842251	3L_14842251_SNP [dm3] 3L_14849151_SNP [dm6]	A	G	3.212e^-4	0.92	INTRON CG17839
3L	14737426	3L_14737426_SNP [dm3] 3L_14744326_SNP [dm6]	T	C	3.213e^-4	0.92	SYNONYMOUS_CODING ome
2R	14868880	2R_14868880_SNP [dm3] 2R_18981375_SNP [dm6]	G	C	3.217e^-4	0.92	INTERGENIC
2R	9249313	2R_9249313_SNP [dm3] 2R_13361808_SNP [dm6]	G	C	3.217e^-4	0.92	DOWNSTREAM CR45312 INTERGENIC
X	18728650	X_18728650_SNP [dm3] X_18834617_SNP [dm6]	T	G	3.224e^-4	0.92	INTRON Pvf1	TF binding site BDTNP1_TFBS_da
X	6704060	X_6704060_SNP [dm3] X_6810027_SNP [dm6]	C	A	3.257e^-4	0.92	SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8585172	3L_8585172_SNP [dm3] 3L_8592072_SNP [dm6]	C	T	3.273e^-4	0.92	NON_SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7056133	2L_7056133_SNP [dm3] 2L_7056133_SNP [dm6]	G	A	3.283e^-4	0.92	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	9451407	2R_9451407_SNP [dm3] 2R_13563902_SNP [dm6]	G	A	3.285e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
X	793216	X_793216_SNP [dm3] X_899183_SNP [dm6]	C	A	3.287e^-4	0.92	SPLICE_SITE_DONOR CG43867 INTRON CG43867
3L	14363757	3L_14363757_SNP [dm3] 3L_14370657_SNP [dm6]	A	C	3.288e^-4	0.92	UPSTREAM CG13481 INTERGENIC
3R	23162065	3R_23162065_SNP [dm3] 3R_27336343_SNP [dm6]	G	T	3.295e^-4	0.92	INTERGENIC
3L	11406436	3L_11406436_SNP [dm3] 3L_11413336_SNP [dm6]	G	A	3.302e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11406437	3L_11406437_SNP [dm3] 3L_11413337_SNP [dm6]	C	T	3.302e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17523190	3L_17523190_SNP [dm3] 3L_17530090_SNP [dm6]	G	A	3.303e^-4	0.92	UTR_5_PRIME Nedd4 UPSTREAM Edc3 EXON CR45165	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7748758	3L_7748758_SNP [dm3] 3L_7755658_SNP [dm6]	T	C	3.312e^-4	0.92	DOWNSTREAM CG7409 INTRON CG32373
2L	2207967	2L_2207967_SNP [dm3] 2L_2207967_SNP [dm6]	G	A	3.314e^-4	0.92	SYNONYMOUS_CODING CG33124
X	18728592	X_18728592_SNP [dm3] X_18834559_SNP [dm6]	G	T	3.316e^-4	0.92	INTRON Pvf1	TF binding site BDTNP1_TFBS_da
2R	13662247	2R_13662247_SNP [dm3] 2R_17774742_SNP [dm6]	G	A	3.328e^-4	0.92	UTR_3_PRIME fab1 & 1 other DOWNSTREAM fab1 & 1 other
3R	16866701	3R_16866701_SNP [dm3] 3R_21040979_SNP [dm6]	C	G	3.330e^-4	0.92	SPLICE_SITE_REGION Dhc93AB SYNONYMOUS_CODING Dhc93AB
3L	914661	3L_914661_SNP [dm3] 3L_914661_SNP [dm6]	A	T	3.330e^-4	0.92	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2799868	3L_2799868_SNP [dm3] 3L_2799868_SNP [dm6]	A	T	3.331e^-4	0.92	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	12642471	3R_12642471_SNP [dm3] 3R_16816749_SNP [dm6]	C	G	3.339e^-4	0.92	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18888878	3R_18888878_SNP [dm3] 3R_23063156_SNP [dm6]	G	T	3.341e^-4	0.92	SYNONYMOUS_CODING CG17111 DOWNSTREAM Ublcp1	TF binding site mE1_TFBS_chinmo
3L	14982228	3L_14982228_SNP [dm3] 3L_14989128_SNP [dm6]	T	C	3.343e^-4	0.92	INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19377402	2R_19377402_SNP [dm3] 2R_23489879_SNP [dm6]	C	A	3.344e^-4	0.92	SYNONYMOUS_CODING CG43795	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	19404444	3R_19404444_SNP [dm3] 3R_23578722_SNP [dm6]	G	T	3.352e^-4	0.92	SYNONYMOUS_CODING beat-IV
3L	13453446	3L_13453446_SNP [dm3] 3L_13460346_SNP [dm6]	C	T	3.362e^-4	0.92	SYNONYMOUS_CODING CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16880595	X_16880595_SNP [dm3] X_16986562_SNP [dm6]	T	A	3.367e^-4	0.92	INTRON CG45002
3R	21587394	3R_21587394_SNP [dm3] 3R_25761672_SNP [dm6]	G	T	3.370e^-4	0.92	UTR_5_PRIME LpR1 UPSTREAM LpR1
2L	16228815	2L_16228815_DEL [dm3] 2L_16228815_DEL [dm6]	TT	T	3.373e^-4	0.92	INTERGENIC
3L	4057485	3L_4057485_SNP [dm3] 3L_4057485_SNP [dm6]	C	G	3.374e^-4	0.92	SYNONYMOUS_CODING CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9864247	3L_9864247_SNP [dm3] 3L_9871147_SNP [dm6]	A	C	3.375e^-4	0.92	DOWNSTREAM CG8108 INTERGENIC
3R	23247012	3R_23247012_SNP [dm3] 3R_27421290_SNP [dm6]	G	T	3.381e^-4	0.92	INTRON side
X	15536950	X_15536950_INS [dm3] X_15642917_INS [dm6]	A	ACATAAACA	3.382e^-4	0.92	UPSTREAM CR44893 INTERGENIC
3L	12181208	3L_12181208_SNP [dm3] 3L_12188108_SNP [dm6]	T	C	3.384e^-4	0.92	UPSTREAM Est-6 DOWNSTREAM CG6910 INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
3L	9864957	3L_9864957_SNP [dm3] 3L_9871857_SNP [dm6]	A	G	3.386e^-4	0.92	INTERGENIC
3R	26686155	3R_26686155_SNP [dm3] 3R_30860433_SNP [dm6]	G	A	3.389e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14380884	3R_14380884_SNP [dm3] 3R_18555162_SNP [dm6]	T	C	3.397e^-4	0.92	INTERGENIC
2L	19291358	2L_19291358_DEL [dm3] 2L_19291358_DEL [dm6]	CGCCATTGGGG...	C	3.413e^-4	0.92	INTERGENIC
2R	14598431	2R_14598431_SNP [dm3] 2R_18710926_SNP [dm6]	A	G	3.418e^-4	0.92	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6998824	3L_6998824_SNP [dm3] 3L_7005724_SNP [dm6]	G	T	3.427e^-4	0.92	INTRON Mp
3R	20865385	3R_20865385_SNP [dm3] 3R_25039663_SNP [dm6]	A	G	3.429e^-4	0.92	UPSTREAM CG6422 DOWNSTREAM 5PtaseI INTRON bai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9344657	2L_9344657_SNP [dm3] 2L_9344657_SNP [dm6]	G	T	3.432e^-4	0.92	UTR_3_PRIME CG3748 DOWNSTREAM CG3748
X	8832119	X_8832119_SNP [dm3] X_8938086_SNP [dm6]	G	C	3.442e^-4	0.92	INTRON rdgA
2R	9165119	2R_9165119_SNP [dm3] 2R_13277614_SNP [dm6]	T	G	3.444e^-4	0.92	INTRON Dh31-R
2R	15945695	2R_15945695_SNP [dm3] 2R_20058190_SNP [dm6]	C	A	3.458e^-4	0.92	EXON CR44631	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9790925	2R_9790925_SNP [dm3] 2R_13903420_SNP [dm6]	T	C	3.461e^-4	0.92	SYNONYMOUS_CODING shot	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	14675079	3R_14675079_INS [dm3] 3R_18849357_INS [dm6]	T	TATT	3.462e^-4	0.92	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11306877	2L_11306877_DEL [dm3] 2L_11306877_DEL [dm6]	GA	G	3.463e^-4	0.92	UPSTREAM CR43721 INTERGENIC	TF binding site mE1_TFBS_cad
X	8030725	X_8030725_SNP [dm3] X_8136692_SNP [dm6]	C	T	3.465e^-4	0.92	SYNONYMOUS_CODING CG2120 UPSTREAM cyr DOWNSTREAM Smox
2L	11330131	2L_11330131_INS [dm3] 2L_11330131_INS [dm6]	TG	CTAGC	3.466e^-4	0.92	INTERGENIC
2L	4740662	2L_4740662_SNP [dm3] 2L_4740662_SNP [dm6]	G	A	3.468e^-4	0.92	INTRON CG15630
2L	20267951	2L_20267951_SNP [dm3] 2L_20267951_SNP [dm6]	A	G	3.473e^-4	0.92	INTERGENIC
2L	5886683	2L_5886683_SNP [dm3] 2L_5886683_SNP [dm6]	C	A	3.476e^-4	0.92	DOWNSTREAM CR44577 & 1 other INTERGENIC
X	20893236	X_20893236_SNP [dm3] X_21022209_SNP [dm6]	G	T	3.479e^-4	0.92	INTERGENIC
2L	9591688	2L_9591688_SNP [dm3] 2L_9591688_SNP [dm6]	C	T	3.486e^-4	0.92	UTR_3_PRIME CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	7478609	3L_7478609_SNP [dm3] 3L_7485509_SNP [dm6]	G	C	3.492e^-4	0.92	UPSTREAM mthl6 INTERGENIC
3L	8672560	3L_8672560_SNP [dm3] 3L_8679460_SNP [dm6]	G	T	3.494e^-4	0.92	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs
3R	2409760	3R_2409760_SNP [dm3] 3R_6584038_SNP [dm6]	C	T	3.501e^-4	0.92	INTRON dpr11
2L	6774088	2L_6774088_SNP [dm3] 2L_6774088_SNP [dm6]	A	C	3.503e^-4	0.92	UTR_5_PRIME CG17378
3L	18267905	3L_18267905_SNP [dm3] 3L_18274805_SNP [dm6]	C	T	3.505e^-4	0.92	INTERGENIC
2L	11195139	2L_11195139_SNP [dm3] 2L_11195139_SNP [dm6]	G	T	3.510e^-4	0.92	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_inv
3L	15864798	3L_15864798_SNP [dm3] 3L_15871698_SNP [dm6]	A	G	3.513e^-4	0.92	INTRON pHCl
3L	14082784	3L_14082784_SNP [dm3] 3L_14089684_SNP [dm6]	T	C	3.516e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12263246	3R_12263246_SNP [dm3] 3R_16437524_SNP [dm6]	C	A	3.517e^-4	0.92	UPSTREAM mRpS33 INTRON ema
3L	8548184	3L_8548184_SNP [dm3] 3L_8555084_SNP [dm6]	C	T	3.525e^-4	0.92	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9379933	2R_9379933_SNP [dm3] 2R_13492428_SNP [dm6]	T	A	3.527e^-4	0.92	INTRON bbc
3L	7196175	3L_7196175_SNP [dm3] 3L_7203075_SNP [dm6]	A	T	3.540e^-4	0.92	INTERGENIC
3L	12520237	3L_12520237_SNP [dm3] 3L_12527137_SNP [dm6]	T	A	3.551e^-4	0.92	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14410277	2L_14410277_SNP [dm3] 2L_14410277_SNP [dm6]	G	A	3.557e^-4	0.92	UPSTREAM elB DOWNSTREAM CR44733 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1805134	3L_1805134_SNP [dm3] 3L_1805134_SNP [dm6]	A	G	3.569e^-4	0.92	SYNONYMOUS_CODING CG42676 DOWNSTREAM CG42676 & 1 other	TF binding site mE1_TFBS_cad
3L	20716575	3L_20716575_SNP [dm3] 3L_20723475_SNP [dm6]	A	C	3.570e^-4	0.92	INTERGENIC
3L	11845836	3L_11845836_SNP [dm3] 3L_11852736_SNP [dm6]	T	C	3.582e^-4	0.92	INTRON CG44837
3R	21833714	3R_21833714_SNP [dm3] 3R_26007992_SNP [dm6]	A	G	3.600e^-4	0.92	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13937945	2R_13937945_SNP [dm3] 2R_18050440_SNP [dm6]	C	T	3.602e^-4	0.92	NON_SYNONYMOUS_CODING Muc55B UPSTREAM CG14495	TF binding site mE1_TFBS_sens
X	5042798	X_5042798_SNP [dm3] X_5148765_SNP [dm6]	A	C	3.604e^-4	0.92	INTRON rg & 1 other
X	12824376	X_12824376_SNP [dm3] X_12930343_SNP [dm6]	T	G	3.608e^-4	0.92	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16982764	X_16982764_DEL [dm3] X_17088731_DEL [dm6]	ATCGTTCATTTCGTATGTGG...	A	3.613e^-4	0.92	INTERGENIC
X	6122463	X_6122463_SNP [dm3] X_6228430_SNP [dm6]	T	C	3.615e^-4	0.92	INTRON CG14446	TF binding site mE1_TFBS_sens
3L	9133893	3L_9133893_SNP [dm3] 3L_9140793_SNP [dm6]	G	A	3.616e^-4	0.92	SPLICE_SITE_REGION nwk INTRON nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11100840	3L_11100840_SNP [dm3] 3L_11107740_SNP [dm6]	C	G	3.621e^-4	0.92	UPSTREAM CG12522 & 1 other INTERGENIC
2R	19203065	2R_19203065_SNP [dm3] 2R_23315542_SNP [dm6]	A	C	3.622e^-4	0.92	INTERGENIC
3L	3406501	3L_3406501_SNP [dm3] 3L_3406501_SNP [dm6]	A	G	3.628e^-4	0.92	INTRON sty
2R	18017451	2R_18017451_SNP [dm3] 2R_22129946_SNP [dm6]	C	A	3.628e^-4	0.92	DOWNSTREAM CG34205 INTRON NtR	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15709360	3R_15709360_SNP [dm3] 3R_19883638_SNP [dm6]	C	T	3.635e^-4	0.92	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad
3R	16990123	3R_16990123_SNP [dm3] 3R_21164401_SNP [dm6]	G	T	3.645e^-4	0.92	SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19224451	X_19224451_SNP [dm3] X_19330418_SNP [dm6]	T	C	3.648e^-4	0.92	INTRON nAChRalpha7
2L	6694061	2L_6694061_INS [dm3] 2L_6694061_INS [dm6]	T	TTCTGTATAT	3.658e^-4	0.92	INTRON Tsp
3R	18889164	3R_18889164_SNP [dm3] 3R_23063442_SNP [dm6]	T	G	3.661e^-4	0.92	NON_SYNONYMOUS_CODING CG17111 DOWNSTREAM Ublcp1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	15435992	X_15435992_SNP [dm3] X_15541959_SNP [dm6]	T	G	3.693e^-4	0.92	INTRON Ac13E
2R	2758511	2R_2758511_SNP [dm3] 2R_6871006_SNP [dm6]	A	C	3.703e^-4	0.92	INTRON coro	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	5012179	2L_5012179_SNP [dm3] 2L_5012179_SNP [dm6]	C	T	3.709e^-4	0.92	UTR_3_PRIME vkg DOWNSTREAM CG3887	TF binding site mE1_TFBS_sens
3L	952371	3L_952371_SNP [dm3] 3L_952371_SNP [dm6]	T	A	3.714e^-4	0.92	INTRON Glut1
3R	19617956	3R_19617956_SNP [dm3] 3R_23792234_SNP [dm6]	G	C	3.727e^-4	0.92	INTRON mbc
2L	12925932	2L_12925932_SNP [dm3] 2L_12925932_SNP [dm6]	G	A	3.730e^-4	0.92	DOWNSTREAM ACXA INTRON ACXE
3R	18982948	3R_18982948_SNP [dm3] 3R_23157226_SNP [dm6]	T	A	3.730e^-4	0.92	DOWNSTREAM VhaAC39-2 INTRON unk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	3780298	3L_3780298_SNP [dm3] 3L_3780298_SNP [dm6]	A	C	3.731e^-4	0.92	INTRON CG32264
2L	9572262	2L_9572262_SNP [dm3] 2L_9572262_SNP [dm6]	T	C	3.746e^-4	0.92	NON_SYNONYMOUS_CODING CG3838
2L	12080206	2L_12080206_SNP [dm3] 2L_12080206_SNP [dm6]	C	T	3.747e^-4	0.92	DOWNSTREAM CR44590 EXON CR44591	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	14316913	2R_14316913_SNP [dm3] 2R_18429408_SNP [dm6]	T	G	3.752e^-4	0.92	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG30118	TF binding site mE1_TFBS_cad
2R	8276688	2R_8276688_SNP [dm3] 2R_12389183_SNP [dm6]	T	C	3.759e^-4	0.92	INTRON Cpr49Ac	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3733246	3L_3733246_DEL [dm3] 3L_3733246_DEL [dm6]	AA	A	3.766e^-4	0.92	INTRON CG32264
3R	12246687	3R_12246687_SNP [dm3] 3R_16420965_SNP [dm6]	T	C	3.770e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12258119	3R_12258119_SNP [dm3] 3R_16432397_SNP [dm6]	A	G	3.770e^-4	0.92	NON_SYNONYMOUS_CODING CG31279 UPSTREAM CG17565 DOWNSTREAM tRNA:CR31282	TF binding site BDTNP1_TFBS_dl
3R	12268565	3R_12268565_SNP [dm3] 3R_16442843_SNP [dm6]	G	T	3.770e^-4	0.92	SYNONYMOUS_CODING CG14894 UPSTREAM CG14882	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	3238709	2L_3238709_SNP [dm3] 2L_3238709_SNP [dm6]	C	T	3.770e^-4	0.92	INTERGENIC
3R	17197162	3R_17197162_SNP [dm3] 3R_21371440_SNP [dm6]	G	A	3.773e^-4	0.92	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
3L	7081418	3L_7081418_SNP [dm3] 3L_7088318_SNP [dm6]	G	T	3.776e^-4	0.92	SYNONYMOUS_CODING Cpr65Eb
2L	11050364	2L_11050364_SNP [dm3] 2L_11050364_SNP [dm6]	T	C	3.783e^-4	0.92	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4057633	3L_4057633_SNP [dm3] 3L_4057633_SNP [dm6]	T	A	3.787e^-4	0.92	INTRON CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16678317	2R_16678317_SNP [dm3] 2R_20790812_SNP [dm6]	G	T	3.796e^-4	0.92	NON_SYNONYMOUS_CODING CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
3L	23026756	3L_23026756_SNP [dm3] 3L_23033656_SNP [dm6]	G	T	3.801e^-4	0.92	NON_SYNONYMOUS_CODING nrm INTRON nrm
2R	14537005	2R_14537005_SNP [dm3] 2R_18649500_SNP [dm6]	C	G	3.828e^-4	0.92	INTRON SP2637
2L	13675876	2L_13675876_SNP [dm3] 2L_13675876_SNP [dm6]	C	T	3.829e^-4	0.92	DOWNSTREAM CG31814 INTERGENIC
3R	14672727	3R_14672727_SNP [dm3] 3R_18847005_SNP [dm6]	A	C	3.833e^-4	0.92	INTRON CG18208
2L	10810394	2L_10810394_SNP [dm3] 2L_10810394_SNP [dm6]	C	T	3.845e^-4	0.92	INTRON Nos
3R	12928969	3R_12928969_DEL [dm3] 3R_17103247_DEL [dm6]	TTCAATCCCATT...	T	3.855e^-4	0.92	INTRON cher
3L	11630423	3L_11630423_SNP [dm3] 3L_11637323_SNP [dm6]	A	G	3.867e^-4	0.92	INTRON CG32091
2R	18577933	2R_18577933_SNP [dm3] 2R_22690428_SNP [dm6]	A	T	3.874e^-4	0.92	UPSTREAM CR44764 DOWNSTREAM CR44763 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	13410863	3R_13410863_SNP [dm3] 3R_17585141_SNP [dm6]	T	C	3.879e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9872993	3L_9872993_DEL [dm3] 3L_9879893_DEL [dm6]	TGATA	T	3.887e^-4	0.92	INTRON CG34382
3L	14828381	3L_14828381_SNP [dm3] 3L_14835281_SNP [dm6]	T	C	3.889e^-4	0.92	INTRON CG17839
3R	20310851	3R_20310851_SNP [dm3] 3R_24485129_SNP [dm6]	G	C	3.894e^-4	0.92	UPSTREAM nAChRalpha2 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5541123	2L_5541123_SNP [dm3] 2L_5541123_SNP [dm6]	C	T	3.896e^-4	0.92	INTRON Hel25E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3R	23877512	3R_23877512_SNP [dm3] 3R_28051790_SNP [dm6]	G	A	3.897e^-4	0.92	INTRON CG34362
3L	10357696	3L_10357696_SNP [dm3] 3L_10364596_SNP [dm6]	A	T	3.900e^-4	0.92	UPSTREAM CR44327 & 1 other EXON CR44327	TF binding site BDTNP1_TFBS_dl
3L	15971780	3L_15971780_SNP [dm3] 3L_15978680_SNP [dm6]	T	C	3.906e^-4	0.92	SYNONYMOUS_CODING CG17028 DOWNSTREAM CG17029 INTRON brm
3L	9864554	3L_9864554_SNP [dm3] 3L_9871454_SNP [dm6]	A	G	3.908e^-4	0.92	DOWNSTREAM CG8108 INTERGENIC
2L	6745120	2L_6745120_SNP [dm3] 2L_6745120_SNP [dm6]	C	T	3.912e^-4	0.92	DOWNSTREAM snoRNA:Me28S-G2743 INTRON CG11221 & 1 other	TF binding site mE1_TFBS_sens
3L	19170353	3L_19170353_DEL [dm3] 3L_19177253_DEL [dm6]	CA	C	3.912e^-4	0.92	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14598436	2R_14598436_SNP [dm3] 2R_18710931_SNP [dm6]	C	T	3.915e^-4	0.92	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	516246	2L_516246_SNP [dm3] 2L_516246_SNP [dm6]	T	C	3.915e^-4	0.92	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9572272	2L_9572272_SNP [dm3] 2L_9572272_SNP [dm6]	T	C	3.924e^-4	0.92	SYNONYMOUS_CODING CG3838
2L	6694059	2L_6694059_SNP [dm3] 2L_6694059_SNP [dm6]	C	T	3.925e^-4	0.92	INTRON Tsp
X	12936492	X_12936492_SNP [dm3] X_13042459_SNP [dm6]	A	G	3.925e^-4	0.92	INTRON rad
2R	13893192	2R_13893192_INS [dm3] 2R_18005687_INS [dm6]	C	CC	3.930e^-4	0.92	INTRON dpr13 EXON CR44419
3R	17209279	3R_17209279_SNP [dm3] 3R_21383557_SNP [dm6]	C	G	3.932e^-4	0.92	INTERGENIC
2L	11772197	2L_11772197_SNP [dm3] 2L_11772197_SNP [dm6]	A	C	3.933e^-4	0.92	INTERGENIC
3R	25394321	3R_25394321_SNP [dm3] 3R_29568599_SNP [dm6]	T	G	3.941e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12268564	3R_12268564_SNP [dm3] 3R_16442842_SNP [dm6]	T	C	3.942e^-4	0.92	NON_SYNONYMOUS_CODING CG14894 UPSTREAM CG14882	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
X	16593337	X_16593337_DEL [dm3] X_16699304_DEL [dm6]	CC	C	3.942e^-4	0.92	UTR_3_PRIME CG9676 INTRON CG4678
2L	14970817	2L_14970817_SNP [dm3] 2L_14970817_SNP [dm6]	G	C	3.948e^-4	0.92	INTRON CG42313
3R	20312553	3R_20312553_SNP [dm3] 3R_24486831_SNP [dm6]	C	G	3.949e^-4	0.92	INTRON nAChRalpha2
3L	4057641	3L_4057641_SNP [dm3] 3L_4057641_SNP [dm6]	G	A	3.951e^-4	0.92	INTRON CG1136	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13386481	3L_13386481_SNP [dm3] 3L_13393381_SNP [dm6]	C	T	3.951e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	9980773	3R_9980773_SNP [dm3] 3R_14155051_SNP [dm6]	G	T	3.959e^-4	0.92	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
2L	14847338	2L_14847338_SNP [dm3] 2L_14847338_SNP [dm6]	C	T	3.972e^-4	0.92	INTRON CG15279
2R	13937659	2R_13937659_SNP [dm3] 2R_18050154_SNP [dm6]	A	C	3.984e^-4	0.92	UTR_3_PRIME Muc55B UPSTREAM CG14495 DOWNSTREAM Muc55B
3L	14982167	3L_14982167_SNP [dm3] 3L_14989067_SNP [dm6]	C	A	3.988e^-4	0.92	INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	2405597	3R_2405597_SNP [dm3] 3R_6579875_SNP [dm6]	G	A	3.988e^-4	0.92	UPSTREAM CG2336 INTRON dpr11
3L	7357035	3L_7357035_SNP [dm3] 3L_7363935_SNP [dm6]	G	A	3.991e^-4	0.92	SYNONYMOUS_CODING Sec63 DOWNSTREAM Sh3beta	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14417357	2L_14417357_SNP [dm3] 2L_14417357_SNP [dm6]	T	C	4.007e^-4	0.92	UPSTREAM Pburs INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2073700	3L_2073700_SNP [dm3] 3L_2073700_SNP [dm6]	A	G	4.008e^-4	0.92	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_HSA
2L	9574960	2L_9574960_SNP [dm3] 2L_9574960_SNP [dm6]	G	A	4.011e^-4	0.92	SYNONYMOUS_CODING Mtpalpha	TF binding site mE1_TFBS_sens
3L	14313189	3L_14313189_SNP [dm3] 3L_14320089_SNP [dm6]	A	G	4.019e^-4	0.92	INTRON fz
X	10373763	X_10373763_SNP [dm3] X_10479730_SNP [dm6]	G	A	4.021e^-4	0.92	INTRON PPP4R2r	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	21787219	3L_21787219_SNP [dm3] 3L_21794119_SNP [dm6]	C	T	4.033e^-4	0.92	INTERGENIC
3L	17235853	3L_17235853_SNP [dm3] 3L_17242753_SNP [dm6]	T	G	4.033e^-4	0.92	UPSTREAM CG6512 & 1 other INTERGENIC	transposable element FlyBase
2L	1343843	2L_1343843_SNP [dm3] 2L_1343843_SNP [dm6]	A	C	4.036e^-4	0.92	UPSTREAM Cdlc2 INTRON CG33922
2L	3362804	2L_3362804_SNP [dm3] 2L_3362804_SNP [dm6]	G	A	4.057e^-4	0.92	INTRON CG34394	TF binding site mE1_TFBS_cad
X	8574706	X_8574706_SNP [dm3] X_8680673_SNP [dm6]	C	G	4.060e^-4	0.92	UTR_3_PRIME CG12772 UPSTREAM CG11284	TF binding site BDTNP1_TFBS_hb
3R	9716738	3R_9716738_SNP [dm3] 3R_13891016_SNP [dm6]	G	T	4.068e^-4	0.92	INTERGENIC
3L	22376964	3L_22376964_SNP [dm3] 3L_22383864_SNP [dm6]	A	T	4.072e^-4	0.92	INTRON Ten-m	TF binding site BDTNP1_TFBS_twi
X	12221589	X_12221589_SNP [dm3] X_12327556_SNP [dm6]	C	T	4.074e^-4	0.92	SYNONYMOUS_CODING Ten-a
3L	14982156	3L_14982156_SNP [dm3] 3L_14989056_SNP [dm6]	C	T	4.083e^-4	0.92	INTRON mnd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	16982719	X_16982719_DEL [dm3] X_17088686_DEL [dm6]	ACTGAAATGGAA...	A	4.084e^-4	0.92	INTERGENIC
X	16982734	X_16982734_DEL [dm3] X_17088701_DEL [dm6]	CTGGACGGACATGGCCATAA...	C	4.084e^-4	0.92	INTERGENIC
3R	20555434	3R_20555434_SNP [dm3] 3R_24729712_SNP [dm6]	T	C	4.086e^-4	0.92	INTRON tok
3L	15936508	3L_15936508_SNP [dm3] 3L_15943408_SNP [dm6]	G	T	4.087e^-4	0.92	INTRON Pka-C3
2L	516283	2L_516283_SNP [dm3] 2L_516283_SNP [dm6]	C	T	4.095e^-4	0.92	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9522009	2R_9522009_SNP [dm3] 2R_13634504_SNP [dm6]	A	T	4.097e^-4	0.92	INTRON fas	TF binding site BDTNP1_TFBS_dl
2R	14598138	2R_14598138_SNP [dm3] 2R_18710633_SNP [dm6]	A	T	4.100e^-4	0.92	UPSTREAM pncr016:2R INTRON CG15087	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18312596	3L_18312596_SNP [dm3] 3L_18319496_SNP [dm6]	A	G	4.102e^-4	0.92	INTERGENIC
3R	14659365	3R_14659365_SNP [dm3] 3R_18833643_SNP [dm6]	C	A	4.112e^-4	0.92	INTRON CG18208
3L	3780290	3L_3780290_SNP [dm3] 3L_3780290_SNP [dm6]	T	G	4.119e^-4	0.92	INTRON CG32264
2L	9594270	2L_9594270_SNP [dm3] 2L_9594270_SNP [dm6]	G	C	4.135e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10330817	2R_10330817_SNP [dm3] 2R_14443312_SNP [dm6]	G	A	4.138e^-4	0.92	INTRON Oaz
3L	8766323	3L_8766323_SNP [dm3] 3L_8773223_SNP [dm6]	A	G	4.139e^-4	0.92	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
2R	18493463	2R_18493463_SNP [dm3] 2R_22605958_SNP [dm6]	C	T	4.140e^-4	0.92	UPSTREAM RpS16 & 2 others INTRON RpS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10274963	3L_10274963_SNP [dm3] 3L_10281863_SNP [dm6]	C	A	4.145e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13937686	2R_13937686_SNP [dm3] 2R_18050181_SNP [dm6]	C	T	4.150e^-4	0.92	UTR_3_PRIME Muc55B UPSTREAM CG14495 DOWNSTREAM Muc55B
3R	9542553	3R_9542553_SNP [dm3] 3R_13716831_SNP [dm6]	G	T	4.152e^-4	0.92	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	11335895	2R_11335895_SNP [dm3] 2R_15448390_SNP [dm6]	T	A	4.172e^-4	0.92	INTRON CG43729
2R	8773660	2R_8773660_SNP [dm3] 2R_12886155_SNP [dm6]	A	T	4.173e^-4	0.92	INTRON vg	TF binding site BDTNP1_TFBS_dl
2L	12925364	2L_12925364_SNP [dm3] 2L_12925364_SNP [dm6]	T	A	4.176e^-4	0.92	UTR_3_PRIME ACXA UPSTREAM ACXE
3L	17499412	3L_17499412_SNP [dm3] 3L_17506312_SNP [dm6]	T	A	4.177e^-4	0.92	INTRON Oatp74D
3R	11039594	3R_11039594_INS [dm3] 3R_15213872_INS [dm6]	T	TT	4.184e^-4	0.92	UPSTREAM CG4210 & 1 other DOWNSTREAM SIDL INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10912637	3L_10912637_SNP [dm3] 3L_10919537_SNP [dm6]	A	T	4.191e^-4	0.92	INTERGENIC
3R	8799610	3R_8799610_SNP [dm3] 3R_12973888_SNP [dm6]	T	G	4.193e^-4	0.92	INTRON CG7381
3L	9865373	3L_9865373_SNP [dm3] 3L_9872273_SNP [dm6]	C	T	4.201e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	17464466	X_17464466_SNP [dm3] X_17570433_SNP [dm6]	A	G	4.202e^-4	0.92	INTERGENIC
3R	21634485	3R_21634485_SNP [dm3] 3R_25808763_SNP [dm6]	G	T	4.209e^-4	0.92	DOWNSTREAM CR45652 INTERGENIC
3L	1595580	3L_1595580_SNP [dm3] 3L_1595580_SNP [dm6]	G	A	4.219e^-4	0.92	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18997628	X_18997628_SNP [dm3] X_19103595_SNP [dm6]	T	A	4.224e^-4	0.92	INTERGENIC
3R	9978458	3R_9978458_SNP [dm3] 3R_14152736_SNP [dm6]	T	C	4.226e^-4	0.92	UPSTREAM CG14355 & 1 other DOWNSTREAM CG9722 INTERGENIC
2L	14469561	2L_14469561_SNP [dm3] 2L_14469561_SNP [dm6]	A	C	4.227e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6808915	3R_6808915_SNP [dm3] 3R_10983193_SNP [dm6]	G	A	4.228e^-4	0.92	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10456370	3L_10456370_SNP [dm3] 3L_10463270_SNP [dm6]	G	A	4.247e^-4	0.92	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20819165	2L_20819165_DEL [dm3] 2L_20819165_DEL [dm6]	TGAGTGCATAGTGAACTTGT...	T	4.252e^-4	0.92	UPSTREAM CheB38a DOWNSTREAM CheB38c INTERGENIC
3R	8069979	3R_8069979_SNP [dm3] 3R_12244257_SNP [dm6]	C	A	4.253e^-4	0.92	UPSTREAM CR45582 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16228578	2L_16228578_DEL [dm3] 2L_16228578_DEL [dm6]	AATAATAATGAAAATA...	T	4.254e^-4	0.92	INTERGENIC
3L	13058465	3L_13058465_SNP [dm3] 3L_13065365_SNP [dm6]	T	C	4.255e^-4	0.92	INTERGENIC
3L	12213285	3L_12213285_SNP [dm3] 3L_12220185_SNP [dm6]	A	T	4.259e^-4	0.92	UTR_5_PRIME app
2L	6694082	2L_6694082_MNP [dm3] 2L_6694082_MNP [dm6]	ATG	GGA	4.266e^-4	0.92	INTRON Tsp
2L	6694085	2L_6694085_DEL [dm3] 2L_6694085_DEL [dm6]	ATTG	A	4.266e^-4	0.92	INTRON Tsp
3R	26528858	3R_26528858_SNP [dm3] 3R_30703136_SNP [dm6]	T	A	4.267e^-4	0.92	INTERGENIC
X	6149817	X_6149817_SNP [dm3] X_6255784_SNP [dm6]	G	T	4.268e^-4	0.92	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5147377	2L_5147377_SNP [dm3] 2L_5147377_SNP [dm6]	A	G	4.275e^-4	0.92	INTRON Msp300
2L	5147386	2L_5147386_SNP [dm3] 2L_5147386_SNP [dm6]	A	T	4.275e^-4	0.92	INTRON Msp300
2L	16153509	2L_16153509_SNP [dm3] 2L_16153509_SNP [dm6]	T	C	4.281e^-4	0.92	INTERGENIC
2L	756103	2L_756103_SNP [dm3] 2L_756103_SNP [dm6]	G	A	4.285e^-4	0.92	INTRON GABA-B-R3
2L	756115	2L_756115_MNP [dm3] 2L_756115_MNP [dm6]	TTC	AAT	4.285e^-4	0.92	INTRON GABA-B-R3
2L	756118	2L_756118_INS [dm3] 2L_756118_INS [dm6]	A	AGC	4.285e^-4	0.92	INTRON GABA-B-R3
2L	756136	2L_756136_INS [dm3] 2L_756136_INS [dm6]	A	ATACATTCAAAA...	4.285e^-4	0.92	INTRON GABA-B-R3
2L	756144	2L_756144_SNP [dm3] 2L_756144_SNP [dm6]	A	G	4.285e^-4	0.92	INTRON GABA-B-R3
3L	2651890	3L_2651890_SNP [dm3] 3L_2651890_SNP [dm6]	C	A	4.300e^-4	0.92	UPSTREAM Snup & 2 others INTERGENIC
3L	12520170	3L_12520170_INS [dm3] 3L_12527070_INS [dm6]	T	TGTTTAAATGC...	4.308e^-4	0.92	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16985562	X_16985562_SNP [dm3] X_17091529_SNP [dm6]	C	A	4.312e^-4	0.92	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9891867	2R_9891867_SNP [dm3] 2R_14004362_SNP [dm6]	C	T	4.318e^-4	0.92	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	6147224	X_6147224_SNP [dm3] X_6253191_SNP [dm6]	A	G	4.322e^-4	0.92	INTRON Rbcn-3A
2R	11603873	2R_11603873_SNP [dm3] 2R_15716368_SNP [dm6]	C	A	4.323e^-4	0.92	INTERGENIC
X	8781498	X_8781498_SNP [dm3] X_8887465_SNP [dm6]	G	T	4.326e^-4	0.92	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16818441	3L_16818441_SNP [dm3] 3L_16825341_SNP [dm6]	G	A	4.326e^-4	0.92	INTRON CG13024
3R	20610368	3R_20610368_SNP [dm3] 3R_24784646_SNP [dm6]	A	G	4.329e^-4	0.92	UTR_3_PRIME CG5805 DOWNSTREAM CG5805 & 1 other
2R	14596900	2R_14596900_SNP [dm3] 2R_18709395_SNP [dm6]	G	A	4.336e^-4	0.92	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
3L	9865287	3L_9865287_DEL [dm3] 3L_9872187_DEL [dm6]	GTTAACGGATGG...	G	4.339e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	4094991	2R_4094991_SNP [dm3] 2R_8207486_SNP [dm6]	A	G	4.341e^-4	0.92	INTRON LRP1
3R	18283195	3R_18283195_SNP [dm3] 3R_22457473_SNP [dm6]	C	A	4.349e^-4	0.92	SYNONYMOUS_CODING CG34376
3L	16056420	3L_16056420_SNP [dm3] 3L_16063320_SNP [dm6]	T	C	4.367e^-4	0.92	UTR_3_PRIME Mbs INTRON Mbs
3R	12258550	3R_12258550_SNP [dm3] 3R_16432828_SNP [dm6]	T	A	4.367e^-4	0.92	UTR_3_PRIME CG31279 UPSTREAM CG17565 DOWNSTREAM tRNA:CR31282
2L	2091575	2L_2091575_SNP [dm3] 2L_2091575_SNP [dm6]	T	G	4.371e^-4	0.92	INTRON dpr3
3L	9865398	3L_9865398_SNP [dm3] 3L_9872298_SNP [dm6]	A	T	4.376e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	14455161	3R_14455161_SNP [dm3] 3R_18629439_SNP [dm6]	G	A	4.400e^-4	0.92	UTR_3_PRIME CG14301 UPSTREAM tRNA:CR31228 INTRON qin
3L	16685277	3L_16685277_DEL [dm3] 3L_16692177_DEL [dm6]	TTAAGTA	T	4.404e^-4	0.92	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
3L	15988959	3L_15988959_SNP [dm3] 3L_15995859_SNP [dm6]	G	A	4.406e^-4	0.92	INTRON CG5830
3L	6381159	3L_6381159_SNP [dm3] 3L_6388059_SNP [dm6]	T	A	4.420e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5942220	3R_5942220_SNP [dm3] 3R_10116498_SNP [dm6]	C	T	4.426e^-4	0.92	INTRON CG3940
X	8278920	X_8278920_SNP [dm3] X_8384887_SNP [dm6]	T	A	4.428e^-4	0.92	UPSTREAM CG1387 INTERGENIC
2R	12583083	2R_12583083_SNP [dm3] 2R_16695578_SNP [dm6]	T	G	4.429e^-4	0.92	INTRON CG30463
3R	7791700	3R_7791700_SNP [dm3] 3R_11965978_SNP [dm6]	G	A	4.433e^-4	0.92	SYNONYMOUS_CODING CG12213	TF binding site mE1_TFBS_cad
X	9592402	X_9592402_INS [dm3] X_9698369_INS [dm6]	G	GA	4.440e^-4	0.92	DOWNSTREAM btd INTERGENIC
3L	11424880	3L_11424880_INS [dm3] 3L_11431780_INS [dm6]	A	AACTA	4.440e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17255704	2L_17255704_SNP [dm3] 2L_17255704_SNP [dm6]	C	T	4.442e^-4	0.92	INTRON beat-IIIc
3L	6514370	3L_6514370_SNP [dm3] 3L_6521270_SNP [dm6]	C	T	4.446e^-4	0.92	INTRON sfl
2L	5886744	2L_5886744_SNP [dm3] 2L_5886744_SNP [dm6]	A	G	4.450e^-4	0.92	DOWNSTREAM CR44577 & 1 other INTERGENIC
3L	16310450	3L_16310450_SNP [dm3] 3L_16317350_SNP [dm6]	T	C	4.454e^-4	0.92	UPSTREAM Nplp3 INTERGENIC
X	13562596	X_13562596_SNP [dm3] X_13668563_SNP [dm6]	C	T	4.462e^-4	0.92	SYNONYMOUS_CODING CG11164 UPSTREAM Lig4	TF binding site BDTNP1_TFBS_dl
3L	15922251	3L_15922251_SNP [dm3] 3L_15929151_SNP [dm6]	A	C	4.470e^-4	0.92	INTRON Pka-C3
3L	1263286	3L_1263286_DEL [dm3] 3L_1263286_DEL [dm6]	ATA	A	4.476e^-4	0.92	INTRON CG9134
2R	7617240	2R_7617240_SNP [dm3] 2R_11729735_SNP [dm6]	A	T	4.477e^-4	0.92	INTERGENIC
X	810491	X_810491_DEL [dm3] X_916458_DEL [dm6]	CGGGT	C	4.487e^-4	0.92	INTRON CG43867
2L	15856805	2L_15856805_SNP [dm3] 2L_15856805_SNP [dm6]	C	G	4.487e^-4	0.92	DOWNSTREAM Tektin-A INTERGENIC
3L	1237126	3L_1237126_SNP [dm3] 3L_1237126_SNP [dm6]	G	T	4.488e^-4	0.92	DOWNSTREAM CG9192 INTRON CG9194
3L	9867885	3L_9867885_SNP [dm3] 3L_9874785_SNP [dm6]	T	C	4.490e^-4	0.92	UPSTREAM CR45406 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14456227	2L_14456227_SNP [dm3] 2L_14456227_SNP [dm6]	G	A	4.495e^-4	0.92	UPSTREAM CR44730 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
3L	8685352	3L_8685352_SNP [dm3] 3L_8692252_SNP [dm6]	T	A	4.523e^-4	0.92	UPSTREAM CR44526 INTERGENIC	TF binding site mE1_TFBS_cad
3R	9544627	3R_9544627_SNP [dm3] 3R_13718905_SNP [dm6]	A	T	4.524e^-4	0.92	UPSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20769943	2L_20769943_SNP [dm3] 2L_20769943_SNP [dm6]	C	A	4.534e^-4	0.92	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7486878	3R_7486878_SNP [dm3] 3R_11661156_SNP [dm6]	A	G	4.541e^-4	0.92	INTRON CG42327
X	17573283	X_17573283_INS [dm3] X_17679250_INS [dm6]	T	TTGT	4.548e^-4	0.92	INTRON chas
2L	6725438	2L_6725438_SNP [dm3] 2L_6725438_SNP [dm6]	T	C	4.558e^-4	0.92	INTRON Liprin-alpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
3L	16685274	3L_16685274_SNP [dm3] 3L_16692174_SNP [dm6]	T	G	4.558e^-4	0.92	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
2L	5541132	2L_5541132_SNP [dm3] 2L_5541132_SNP [dm6]	G	C	4.567e^-4	0.92	INTRON Hel25E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2R	14272218	2R_14272218_SNP [dm3] 2R_18384713_SNP [dm6]	G	A	4.570e^-4	0.92	DOWNSTREAM CG15067 & 1 other INTRON CG18107	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8924410	2R_8924410_SNP [dm3] 2R_13036905_SNP [dm6]	A	G	4.573e^-4	0.92	INTERGENIC
2L	9723989	2L_9723989_SNP [dm3] 2L_9723989_SNP [dm6]	T	A	4.575e^-4	0.92	INTRON Nckx30C
3L	17499101	3L_17499101_SNP [dm3] 3L_17506001_SNP [dm6]	C	A	4.577e^-4	0.92	INTRON Oatp74D
3L	9868654	3L_9868654_INS [dm3] 3L_9875554_INS [dm6]	A	AC	4.585e^-4	0.92	UPSTREAM CR45406 INTERGENIC
2L	2531489	2L_2531489_SNP [dm3] 2L_2531489_SNP [dm6]	A	T	4.593e^-4	0.92	INTERGENIC
X	7434981	X_7434981_SNP [dm3] X_7540948_SNP [dm6]	A	C	4.598e^-4	0.92	INTRON CG32719
2R	9900131	2R_9900131_SNP [dm3] 2R_14012626_SNP [dm6]	A	C	4.602e^-4	0.92	INTRON mam
3L	17522218	3L_17522218_SNP [dm3] 3L_17529118_SNP [dm6]	G	A	4.605e^-4	0.92	SYNONYMOUS_CODING Edc3 UPSTREAM snoRNA:Edc3-a & 1 other DOWNSTREAM CR45165	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9838321	X_9838321_SNP [dm3] X_9944288_SNP [dm6]	T	A	4.606e^-4	0.92	INTERGENIC
3R	4913227	3R_4913227_SNP [dm3] 3R_9087505_SNP [dm6]	C	T	4.615e^-4	0.92	INTRON pum
3L	1236366	3L_1236366_SNP [dm3] 3L_1236366_SNP [dm6]	G	A	4.616e^-4	0.92	DOWNSTREAM CG33966 & 2 others INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7771916	3L_7771916_SNP [dm3] 3L_7778816_SNP [dm6]	G	A	4.616e^-4	0.92	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_chinmo
3R	1892536	3R_1892536_SNP [dm3] 3R_6066814_SNP [dm6]	T	C	4.616e^-4	0.92	INTERGENIC
X	4051086	X_4051086_SNP [dm3] X_4157053_SNP [dm6]	C	T	4.619e^-4	0.92	INTRON Fas2
3R	25105225	3R_25105225_SNP [dm3] 3R_29279503_SNP [dm6]	G	A	4.629e^-4	0.92	INTERGENIC	regulatory region REDfly_CRMs
3L	22463789	3L_22463789_SNP [dm3] 3L_22470689_SNP [dm6]	T	C	4.630e^-4	0.92	UTR_5_PRIME CG11426 DOWNSTREAM CG11437
3R	14821578	3R_14821578_SNP [dm3] 3R_18995856_SNP [dm6]	A	G	4.636e^-4	0.92	INTRON gukh
2L	2424558	2L_2424558_SNP [dm3] 2L_2424558_SNP [dm6]	T	C	4.636e^-4	0.92	UTR_3_PRIME CG9886 UPSTREAM CG44139
3R	24332884	3R_24332884_SNP [dm3] 3R_28507162_SNP [dm6]	C	T	4.640e^-4	0.92	SPLICE_SITE_REGION Dhc98D INTRON Dhc98D	TF binding site mE1_TFBS_cad
2R	12583541	2R_12583541_SNP [dm3] 2R_16696036_SNP [dm6]	G	T	4.643e^-4	0.92	INTRON CG30463
2R	8506496	2R_8506496_INS [dm3] 2R_12618991_INS [dm6]	A	ATGGAA	4.643e^-4	0.92	DOWNSTREAM Galphaq INTRON Galphaq & 1 other
3R	16865215	3R_16865215_SNP [dm3] 3R_21039493_SNP [dm6]	A	G	4.648e^-4	0.92	SYNONYMOUS_CODING Dhc93AB
2L	16242489	2L_16242489_SNP [dm3] 2L_16242489_SNP [dm6]	A	C	4.650e^-4	0.92	NON_SYNONYMOUS_CODING CG42818 DOWNSTREAM CG42817
3R	24697797	3R_24697797_SNP [dm3] 3R_28872075_SNP [dm6]	G	A	4.658e^-4	0.92	SYNONYMOUS_CODING CG33203 UPSTREAM CG14529	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	971977	X_971977_SNP [dm3] X_1077944_SNP [dm6]	C	G	4.663e^-4	0.92	INTRON CR44779 & 1 other
3L	14665722	3L_14665722_DEL [dm3] 3L_14672622_DEL [dm6]	ATTA	A	4.663e^-4	0.92	UPSTREAM ome & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19199598	2L_19199598_SNP [dm3] 2L_19199598_SNP [dm6]	C	T	4.664e^-4	0.92	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8147360	3R_8147360_SNP [dm3] 3R_12321638_SNP [dm6]	G	C	4.664e^-4	0.92	DOWNSTREAM tRNA:CR31432 INTERGENIC
3L	5628678	3L_5628678_SNP [dm3] 3L_5635578_SNP [dm6]	C	T	4.665e^-4	0.92	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12459526	2R_12459526_SNP [dm3] 2R_16572021_SNP [dm6]	A	C	4.678e^-4	0.92	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3L	14381619	3L_14381619_SNP [dm3] 3L_14388519_SNP [dm6]	A	C	4.684e^-4	0.92	INTERGENIC
2R	14857385	2R_14857385_SNP [dm3] 2R_18969880_SNP [dm6]	G	A	4.689e^-4	0.92	SYNONYMOUS_CODING prod	TF binding site mE1_TFBS_cad
3R	16944721	3R_16944721_SNP [dm3] 3R_21118999_SNP [dm6]	T	C	4.691e^-4	0.92	UPSTREAM Bdbt DOWNSTREAM slmb INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7752680	3R_7752680_SNP [dm3] 3R_11926958_SNP [dm6]	G	T	4.692e^-4	0.92	INTRON Cad87A
3L	18826714	3L_18826714_SNP [dm3] 3L_18833614_SNP [dm6]	T	C	4.698e^-4	0.92	INTRON Indy	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	17706234	3L_17706234_SNP [dm3] 3L_17713134_SNP [dm6]	T	C	4.701e^-4	0.92	INTRON Ccn
2R	9522015	2R_9522015_SNP [dm3] 2R_13634510_SNP [dm6]	C	T	4.710e^-4	0.92	INTRON fas	TF binding site BDTNP1_TFBS_dl
2L	758222	2L_758222_SNP [dm3] 2L_758222_SNP [dm6]	G	C	4.717e^-4	0.92	DOWNSTREAM GABA-B-R3 INTRON GABA-B-R3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9873577	3L_9873577_SNP [dm3] 3L_9880477_SNP [dm6]	T	C	4.720e^-4	0.92	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2L	16301615	2L_16301615_SNP [dm3] 2L_16301615_SNP [dm6]	G	A	4.721e^-4	0.92	UTR_3_PRIME CG17328 DOWNSTREAM CG5869
2R	12276512	2R_12276512_SNP [dm3] 2R_16389007_SNP [dm6]	C	G	4.721e^-4	0.92	INTRON Sema-2b
X	11084192	X_11084192_SNP [dm3] X_11190159_SNP [dm6]	G	A	4.739e^-4	0.92	INTERGENIC
3L	22955366	3L_22955366_SNP [dm3] 3L_22962266_SNP [dm6]	G	C	4.763e^-4	0.92	DOWNSTREAM CR45758 INTERGENIC
2L	17175847	2L_17175847_SNP [dm3] 2L_17175847_SNP [dm6]	G	C	4.769e^-4	0.92	UPSTREAM Gr36a EXON CR44394
2L	7847664	2L_7847664_SNP [dm3] 2L_7847664_SNP [dm6]	T	C	4.770e^-4	0.92	SPLICE_SITE_REGION CG14535 SYNONYMOUS_CODING CG14535
2R	13644893	2R_13644893_SNP [dm3] 2R_17757388_SNP [dm6]	G	T	4.773e^-4	0.92	UPSTREAM HLH54F & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11213870	X_11213870_SNP [dm3] X_11319837_SNP [dm6]	T	C	4.780e^-4	0.92	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3L	4547595	3L_4547595_SNP [dm3] 3L_4547595_SNP [dm6]	G	T	4.780e^-4	0.92	INTRON CG11357	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19811894	2L_19811894_SNP [dm3] 2L_19811894_SNP [dm6]	A	T	4.782e^-4	0.92	UPSTREAM snRNA:U2:38ABb DOWNSTREAM snRNA:U5:38ABa INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23259866	3R_23259866_SNP [dm3] 3R_27434144_SNP [dm6]	C	T	4.787e^-4	0.92	INTRON side	TF binding site BDTNP1_TFBS_twi
3R	20376904	3R_20376904_SNP [dm3] 3R_24551182_SNP [dm6]	A	G	4.794e^-4	0.92	INTRON Esyt2	TF binding site mE1_TFBS_cad
3L	14483112	3L_14483112_SNP [dm3] 3L_14490012_SNP [dm6]	G	A	4.802e^-4	0.92	INTRON bbg	TF binding site BDTNP1_TFBS_dl
2L	759615	2L_759615_SNP [dm3] 2L_759615_SNP [dm6]	C	A	4.806e^-4	0.92	INTRON GABA-B-R3
2L	16781122	2L_16781122_DEL [dm3] 2L_16781122_DEL [dm6]	GC	T	4.809e^-4	0.92	INTRON Mhc
2L	9757280	2L_9757280_SNP [dm3] 2L_9757280_SNP [dm6]	C	A	4.821e^-4	0.92	INTERGENIC
2R	14147610	2R_14147610_SNP [dm3] 2R_18260105_SNP [dm6]	A	G	4.821e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9902035	2R_9902035_DEL [dm3] 2R_14014530_DEL [dm6]	CACTACC	C	4.825e^-4	0.92	INTRON mam
3L	15917145	3L_15917145_SNP [dm3] 3L_15924045_SNP [dm6]	C	T	4.837e^-4	0.92	INTRON sff	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15150169	X_15150169_SNP [dm3] X_15256136_SNP [dm6]	A	G	4.838e^-4	0.92	INTERGENIC
2L	15233250	2L_15233250_SNP [dm3] 2L_15233250_SNP [dm6]	G	C	4.844e^-4	0.92	INTRON ZnT35C
2R	13661328	2R_13661328_SNP [dm3] 2R_17773823_SNP [dm6]	T	C	4.852e^-4	0.92	DOWNSTREAM fab1 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5742104	3L_5742104_SNP [dm3] 3L_5749004_SNP [dm6]	A	G	4.870e^-4	0.92	UTR_3_PRIME sif
3L	11845835	3L_11845835_SNP [dm3] 3L_11852735_SNP [dm6]	A	T	4.871e^-4	0.92	INTRON CG44837
3L	8976945	3L_8976945_SNP [dm3] 3L_8983845_SNP [dm6]	G	T	4.873e^-4	0.92	DOWNSTREAM CG13314 INTRON Galk	TF binding site mE1_TFBS_HSA
2R	8846588	2R_8846588_SNP [dm3] 2R_12959083_SNP [dm6]	A	T	4.876e^-4	0.92	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14469401	2L_14469401_INS [dm3] 2L_14469401_INS [dm6]	T	TGCCT	4.878e^-4	0.92	INTERGENIC
X	20434979	X_20434979_SNP [dm3] X_20563952_SNP [dm6]	C	A	4.879e^-4	0.92	INTRON RunxB
3R	24334197	3R_24334197_SNP [dm3] 3R_28508475_SNP [dm6]	G	A	4.886e^-4	0.92	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
3L	13894453	3L_13894453_SNP [dm3] 3L_13901353_SNP [dm6]	A	G	4.897e^-4	0.92	INTRON dysc
2L	12910883	2L_12910883_SNP [dm3] 2L_12910883_SNP [dm6]	T	G	4.897e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14519436	2R_14519436_SNP [dm3] 2R_18631931_SNP [dm6]	T	C	4.916e^-4	0.92	UTR_5_PRIME CG5482 UPSTREAM CG5482 DOWNSTREAM CG30122
X	812701	X_812701_SNP [dm3] X_918668_SNP [dm6]	G	A	4.919e^-4	0.92	INTRON CG43867
2L	1988685	2L_1988685_SNP [dm3] 2L_1988685_SNP [dm6]	C	T	4.922e^-4	0.92	SYNONYMOUS_CODING Npc2a UPSTREAM Got2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15329192	3R_15329192_SNP [dm3] 3R_19503470_SNP [dm6]	A	G	4.922e^-4	0.92	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
2L	2669771	2L_2669771_SNP [dm3] 2L_2669771_SNP [dm6]	G	A	4.928e^-4	0.92	UPSTREAM Gr23a INTERGENIC
3L	17493367	3L_17493367_SNP [dm3] 3L_17500267_SNP [dm6]	T	A	4.933e^-4	0.92	INTRON Oatp74D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10486930	3L_10486930_SNP [dm3] 3L_10493830_SNP [dm6]	G	T	4.933e^-4	0.92	DOWNSTREAM S-Lap4 INTRON A2bp1
X	8140380	X_8140380_SNP [dm3] X_8246347_SNP [dm6]	A	C	4.935e^-4	0.92	NON_SYNONYMOUS_CODING Trxr-1	TF binding site mE1_TFBS_chinmo
2R	9900138	2R_9900138_SNP [dm3] 2R_14012633_SNP [dm6]	C	T	4.938e^-4	0.92	INTRON mam
2L	1340082	2L_1340082_SNP [dm3] 2L_1340082_SNP [dm6]	C	G	4.941e^-4	0.92	INTERGENIC
2L	12950039	2L_12950039_SNP [dm3] 2L_12950039_SNP [dm6]	A	T	4.947e^-4	0.92	INTERGENIC
3L	20601417	3L_20601417_SNP [dm3] 3L_20608317_SNP [dm6]	A	T	4.948e^-4	0.92	INTRON knrl
2L	2420102	2L_2420102_SNP [dm3] 2L_2420102_SNP [dm6]	G	A	4.949e^-4	0.92	UPSTREAM CG34447 & 1 other INTERGENIC
3L	16675201	3L_16675201_SNP [dm3] 3L_16682101_SNP [dm6]	A	T	4.950e^-4	0.92	INTRON Lasp & 1 other
3L	5878450	3L_5878450_SNP [dm3] 3L_5885350_SNP [dm6]	G	A	4.952e^-4	0.92	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	14065064	X_14065064_SNP [dm3] X_14171031_SNP [dm6]	C	T	4.954e^-4	0.92	SYNONYMOUS_CODING CG12480 DOWNSTREAM betaNACtes1
3R	2415513	3R_2415513_SNP [dm3] 3R_6589791_SNP [dm6]	C	A	4.956e^-4	0.92	INTRON dpr11
3L	22370878	3L_22370878_SNP [dm3] 3L_22377778_SNP [dm6]	A	G	4.964e^-4	0.92	INTRON Ten-m
3L	10907104	3L_10907104_SNP [dm3] 3L_10914004_SNP [dm6]	T	C	4.980e^-4	0.92	INTERGENIC
2R	4093899	2R_4093899_DEL [dm3] 2R_8206394_DEL [dm6]	TTAGGTACAGGCTGGCAC...	T	4.981e^-4	0.92	UPSTREAM CG14756 INTRON LRP1
2R	18578951	2R_18578951_SNP [dm3] 2R_22691446_SNP [dm6]	G	A	4.983e^-4	0.92	EXON CR44764	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	959392	2L_959392_SNP [dm3] 2L_959392_SNP [dm6]	T	A	5.005e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20557916	X_20557916_SNP [dm3] X_20686889_SNP [dm6]	T	C	5.017e^-4	0.92	EXON CR43862	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Trl
3L	7076363	3L_7076363_SNP [dm3] 3L_7083263_SNP [dm6]	C	A	5.020e^-4	0.92	INTERGENIC
X	7091977	X_7091977_SNP [dm3] X_7197944_SNP [dm6]	G	A	5.020e^-4	0.92	INTRON CR44357 & 1 other
3L	2652065	3L_2652065_SNP [dm3] 3L_2652065_SNP [dm6]	G	T	5.031e^-4	0.92	UPSTREAM Snup & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
X	16534862	X_16534862_SNP [dm3] X_16640829_SNP [dm6]	T	A	5.031e^-4	0.92	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	16412326	3L_16412326_SNP [dm3] 3L_16419226_SNP [dm6]	G	T	5.035e^-4	0.92	SYNONYMOUS_CODING Aats-tyr UPSTREAM CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5087406	2L_5087406_SNP [dm3] 2L_5087406_SNP [dm6]	G	A	5.037e^-4	0.92	INTRON pgant5
X	16147078	X_16147078_SNP [dm3] X_16253045_SNP [dm6]	T	C	5.051e^-4	0.92	DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3R	5244699	3R_5244699_SNP [dm3] 3R_9418977_SNP [dm6]	G	C	5.056e^-4	0.92	UPSTREAM ps INTRON ps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	20825863	2L_20825863_SNP [dm3] 2L_20825863_SNP [dm6]	C	T	5.058e^-4	0.92	SYNONYMOUS_CODING CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3168635	3L_3168635_SNP [dm3] 3L_3168635_SNP [dm6]	C	T	5.076e^-4	0.92	UTR_3_PRIME CG32280 UPSTREAM CG32278 & 1 other
2R	10766681	2R_10766681_SNP [dm3] 2R_14879176_SNP [dm6]	T	A	5.077e^-4	0.92	SYNONYMOUS_CODING Cyp6a19 UTR_3_PRIME Cyp6a19 DOWNSTREAM Cyp6a9
3R	9573391	3R_9573391_SNP [dm3] 3R_13747669_SNP [dm6]	C	T	5.081e^-4	0.92	SYNONYMOUS_CODING CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7745672	2L_7745672_DEL [dm3] 2L_7745672_DEL [dm6]	TTGGTGT	T	5.091e^-4	0.92	UPSTREAM CG7214 INTERGENIC
X	14522316	X_14522316_SNP [dm3] X_14628283_SNP [dm6]	T	C	5.094e^-4	0.92	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8551481	3R_8551481_SNP [dm3] 3R_12725759_SNP [dm6]	G	A	5.111e^-4	0.92	INTERGENIC
2L	10795550	2L_10795550_SNP [dm3] 2L_10795550_SNP [dm6]	C	G	5.113e^-4	0.92	INTRON CG31869	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9904641	2R_9904641_SNP [dm3] 2R_14017136_SNP [dm6]	C	T	5.116e^-4	0.92	INTRON mam
X	9067932	X_9067932_SNP [dm3] X_9173899_SNP [dm6]	G	C	5.119e^-4	0.92	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl
3L	9867797	3L_9867797_SNP [dm3] 3L_9874697_SNP [dm6]	T	G	5.121e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23498579	3R_23498579_SNP [dm3] 3R_27672857_SNP [dm6]	G	T	5.134e^-4	0.92	INTRON unc80	TF binding site mE1_TFBS_chinmo
2L	7057484	2L_7057484_SNP [dm3] 2L_7057484_SNP [dm6]	A	G	5.136e^-4	0.92	SYNONYMOUS_CODING Mnn1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17350880	3L_17350880_SNP [dm3] 3L_17357780_SNP [dm6]	C	T	5.144e^-4	0.92	UTR_3_PRIME CG7692	TF binding site BDTNP1_TFBS_prd
3L	7081406	3L_7081406_SNP [dm3] 3L_7088306_SNP [dm6]	C	T	5.145e^-4	0.92	SYNONYMOUS_CODING Cpr65Eb
3L	2008237	3L_2008237_INS [dm3] 3L_2008237_INS [dm6]	A	AC	5.147e^-4	0.92	DOWNSTREAM CR44535 INTERGENIC
3R	13899415	3R_13899415_SNP [dm3] 3R_18073693_SNP [dm6]	C	T	5.147e^-4	0.92	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14454561	3R_14454561_SNP [dm3] 3R_18628839_SNP [dm6]	A	G	5.148e^-4	0.92	UPSTREAM tRNA:CR31228 DOWNSTREAM CG14301 INTRON qin
3R	12927320	3R_12927320_SNP [dm3] 3R_17101598_SNP [dm6]	C	T	5.149e^-4	0.92	INTRON cher
2R	17723043	2R_17723043_SNP [dm3] 2R_21835538_SNP [dm6]	C	T	5.152e^-4	0.92	SYNONYMOUS_CODING CG4377 UPSTREAM CG4363
3L	3168634	3L_3168634_SNP [dm3] 3L_3168634_SNP [dm6]	G	T	5.155e^-4	0.92	UTR_3_PRIME CG32280 UPSTREAM CG32278 & 1 other
2R	6352974	2R_6352974_DEL [dm3] 2R_10465469_DEL [dm6]	AA	A	5.156e^-4	0.92	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16685275	3L_16685275_SNP [dm3] 3L_16692175_SNP [dm6]	C	T	5.167e^-4	0.92	INTRON Lasp & 2 others	TF binding site mE1_TFBS_cad
2R	8430348	2R_8430348_SNP [dm3] 2R_12542843_SNP [dm6]	C	T	5.171e^-4	0.92	INTRON fra
3L	17239734	3L_17239734_SNP [dm3] 3L_17246634_SNP [dm6]	G	C	5.176e^-4	0.92	INTRON CR43870

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.783e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1925 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1419577	3L_1419577_SNP [dm3] 3L_1419577_SNP [dm6]	G	A	3.487e^-7	0.563	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1419578	3L_1419578_SNP [dm3] 3L_1419578_SNP [dm6]	T	A	8.006e^-7	0.563	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24346974	3R_24346974_SNP [dm3] 3R_28521252_SNP [dm6]	A	G	9.005e^-7	0.563	SYNONYMOUS_CODING Ppn UPSTREAM CG31051
X	18806774	X_18806774_DEL [dm3] X_18912741_DEL [dm6]	GATTAATATG	G	1.321e^-6	0.586	DOWNSTREAM CG7378 EXON CR44708
2L	15212876	2L_15212876_SNP [dm3] 2L_15212876_SNP [dm6]	T	C	1.620e^-6	0.586	INTERGENIC
2L	14335709	2L_14335709_SNP [dm3] 2L_14335709_SNP [dm6]	C	T	1.931e^-6	0.586	INTRON CG33090
3R	8384828	3R_8384828_SNP [dm3] 3R_12559106_SNP [dm6]	T	C	2.285e^-6	0.586	INTRON Octbeta2R
3L	7592913	3L_7592913_SNP [dm3] 3L_7599813_SNP [dm6]	C	T	2.500e^-6	0.586	INTRON CG33275
X	9105471	X_9105471_SNP [dm3] X_9211438_SNP [dm6]	T	A	3.600e^-6	0.75	UPSTREAM CG12119 INTERGENIC
3R	23811543	3R_23811543_SNP [dm3] 3R_27985821_SNP [dm6]	C	A	4.086e^-6	0.766	INTRON betaTub97EF
2R	6758075	2R_6758075_SNP [dm3] 2R_10870570_SNP [dm6]	T	A	4.664e^-6	0.786	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13106529	2L_13106529_SNP [dm3] 2L_13106529_SNP [dm6]	A	G	5.480e^-6	0.786	UPSTREAM CG5142 INTERGENIC
3L	761977	3L_761977_SNP [dm3] 3L_761977_SNP [dm6]	T	C	5.670e^-6	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sbb
3L	9009460	3L_9009460_SNP [dm3] 3L_9016360_SNP [dm6]	G	A	5.865e^-6	0.786	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	12459530	2R_12459530_SNP [dm3] 2R_16572025_SNP [dm6]	T	G	6.926e^-6	0.826	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2R	18017451	2R_18017451_SNP [dm3] 2R_22129946_SNP [dm6]	C	A	8.033e^-6	0.826	DOWNSTREAM CG34205 INTRON NtR	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6691606	2R_6691606_SNP [dm3] 2R_10804101_SNP [dm6]	T	G	8.764e^-6	0.826	NON_SYNONYMOUS_CODING wde	TF binding site mE1_TFBS_sens
3R	17723005	3R_17723005_SNP [dm3] 3R_21897283_SNP [dm6]	G	A	8.978e^-6	0.826	INTRON CG6678
2R	8430389	2R_8430389_SNP [dm3] 2R_12542884_SNP [dm6]	G	A	9.183e^-6	0.826	INTRON fra
3L	9009321	3L_9009321_SNP [dm3] 3L_9016221_SNP [dm6]	A	G	9.234e^-6	0.826	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	18433088	2L_18433088_SNP [dm3] 2L_18433088_SNP [dm6]	T	A	9.471e^-6	0.826	UPSTREAM CR44488 INTERGENIC
2R	10405491	2R_10405491_SNP [dm3] 2R_14517986_SNP [dm6]	T	C	9.940e^-6	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	761982	3L_761982_SNP [dm3] 3L_761982_SNP [dm6]	A	G	1.077e^-5	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sbb
2R	18257081	2R_18257081_SNP [dm3] 2R_22369576_SNP [dm6]	A	T	1.160e^-5	0.826	INTRON Liprin-gamma
3L	1419650	3L_1419650_SNP [dm3] 3L_1419650_SNP [dm6]	T	C	1.205e^-5	0.826	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9009392	3L_9009392_SNP [dm3] 3L_9016292_SNP [dm6]	G	T	1.209e^-5	0.826	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	13906946	2R_13906946_SNP [dm3] 2R_18019441_SNP [dm6]	C	T	1.243e^-5	0.826	SPLICE_SITE_REGION CG5084 SYNONYMOUS_CODING CG5084 UPSTREAM CG10910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11847104	X_11847104_SNP [dm3] X_11953071_SNP [dm6]	T	C	1.272e^-5	0.826	INTRON cac	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17723006	3R_17723006_SNP [dm3] 3R_21897284_SNP [dm6]	C	G	1.277e^-5	0.826	INTRON CG6678
X	18755640	X_18755640_SNP [dm3] X_18861607_SNP [dm6]	A	C	1.344e^-5	0.827	UTR_3_PRIME CG32544 & 1 other
3R	24246693	3R_24246693_SNP [dm3] 3R_28420971_SNP [dm6]	T	G	1.408e^-5	0.827	INTRON beat-VI
2R	11758821	2R_11758821_SNP [dm3] 2R_15871316_SNP [dm6]	C	A	1.415e^-5	0.827	UTR_3_PRIME sli	TF binding site mE1_TFBS_cad
2R	12459526	2R_12459526_SNP [dm3] 2R_16572021_SNP [dm6]	A	C	1.456e^-5	0.827	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
X	7062619	X_7062619_SNP [dm3] X_7168586_SNP [dm6]	T	A	1.602e^-5	0.84	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21587394	3R_21587394_SNP [dm3] 3R_25761672_SNP [dm6]	G	T	1.607e^-5	0.84	UTR_5_PRIME LpR1 UPSTREAM LpR1
3L	761978	3L_761978_SNP [dm3] 3L_761978_SNP [dm6]	G	T	1.613e^-5	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sbb
2R	12459369	2R_12459369_SNP [dm3] 2R_16571864_SNP [dm6]	C	G	1.684e^-5	0.843	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2L	16228564	2L_16228564_SNP [dm3] 2L_16228564_SNP [dm6]	T	A	1.709e^-5	0.843	INTERGENIC
2R	7602336	2R_7602336_SNP [dm3] 2R_11714831_SNP [dm6]	C	G	1.989e^-5	0.907	INTRON pyr
3L	17196177	3L_17196177_SNP [dm3] 3L_17203077_SNP [dm6]	A	G	2.064e^-5	0.907	INTRON Rbp6
2L	16228578	2L_16228578_DEL [dm3] 2L_16228578_DEL [dm6]	AATAATAATGAAAATA...	T	2.094e^-5	0.907	INTERGENIC
3L	10655219	3L_10655219_SNP [dm3] 3L_10662119_SNP [dm6]	C	T	2.101e^-5	0.907	SYNONYMOUS_CODING CG8003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6386666	X_6386666_SNP [dm3] X_6492633_SNP [dm6]	A	G	2.128e^-5	0.907	INTRON CG42340
2R	14519436	2R_14519436_SNP [dm3] 2R_18631931_SNP [dm6]	T	C	2.356e^-5	0.907	UTR_5_PRIME CG5482 UPSTREAM CG5482 DOWNSTREAM CG30122
2L	844501	2L_844501_SNP [dm3] 2L_844501_SNP [dm6]	T	C	2.359e^-5	0.907	INTRON drongo
3R	8381714	3R_8381714_SNP [dm3] 3R_12555992_SNP [dm6]	C	T	2.388e^-5	0.907	INTRON Octbeta2R
3L	8857709	3L_8857709_SNP [dm3] 3L_8864609_SNP [dm6]	T	C	2.392e^-5	0.907	INTRON dally
3L	1419624	3L_1419624_SNP [dm3] 3L_1419624_SNP [dm6]	C	T	2.608e^-5	0.907	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6314485	3L_6314485_SNP [dm3] 3L_6321385_SNP [dm6]	T	C	2.659e^-5	0.907	SYNONYMOUS_CODING Or65a
2L	4954010	2L_4954010_SNP [dm3] 2L_4954010_SNP [dm6]	C	T	2.687e^-5	0.907	UPSTREAM Jon25Bii DOWNSTREAM Jon25Bi INTERGENIC
2L	14448141	2L_14448141_SNP [dm3] 2L_14448141_SNP [dm6]	T	C	2.705e^-5	0.907	DOWNSTREAM CR45726 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7701015	X_7701015_SNP [dm3] X_7806982_SNP [dm6]	G	C	2.729e^-5	0.907	INTERGENIC
3L	1419647	3L_1419647_SNP [dm3] 3L_1419647_SNP [dm6]	T	A	2.743e^-5	0.907	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18177114	2R_18177114_SNP [dm3] 2R_22289609_SNP [dm6]	A	G	3.077e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	9871083	2R_9871083_INS [dm3] 2R_13983578_INS [dm6]	A	AT	3.091e^-5	0.907	UTR_5_PRIME CG8067 UPSTREAM CG8067 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	18980939	2R_18980939_INS [dm3] 2R_23093416_INS [dm6]	A	AA	3.108e^-5	0.907	INTRON CG9876
3R	17722665	3R_17722665_SNP [dm3] 3R_21896943_SNP [dm6]	C	T	3.129e^-5	0.907	INTRON CG6678
3L	16012475	3L_16012475_SNP [dm3] 3L_16019375_SNP [dm6]	A	T	3.145e^-5	0.907	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8315324	3L_8315324_SNP [dm3] 3L_8322224_SNP [dm6]	C	A	3.268e^-5	0.907	UTR_3_PRIME CG13670
3L	1419616	3L_1419616_SNP [dm3] 3L_1419616_SNP [dm6]	A	G	3.288e^-5	0.907	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1419602	3L_1419602_SNP [dm3] 3L_1419602_SNP [dm6]	A	G	3.349e^-5	0.907	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11044864	3R_11044864_SNP [dm3] 3R_15219142_SNP [dm6]	A	C	3.368e^-5	0.907	UPSTREAM CG12241 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5414522	3R_5414522_SNP [dm3] 3R_9588800_SNP [dm6]	A	G	3.412e^-5	0.907	NON_SYNONYMOUS_CODING P58IPK DOWNSTREAM bocksbeutel	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	23199026	3L_23199026_INS [dm3] 3L_23205926_INS [dm6]	A	ACATA	3.440e^-5	0.907	UPSTREAM nAChRalpha4 INTERGENIC	transposable element FlyBase
3R	2863864	3R_2863864_SNP [dm3] 3R_7038142_SNP [dm6]	A	C	3.516e^-5	0.907	EXON CR44933	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	12491431	2R_12491431_SNP [dm3] 2R_16603926_SNP [dm6]	A	C	3.536e^-5	0.907	INTRON CG8303
X	4859846	X_4859846_SNP [dm3] X_4965813_SNP [dm6]	A	C	3.676e^-5	0.907	INTRON CR44833	regulatory region REDfly_CRMs
2R	6674124	2R_6674124_SNP [dm3] 2R_10786619_SNP [dm6]	T	C	3.677e^-5	0.907	UPSTREAM CR44300 & 1 other INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6477241	3R_6477241_SNP [dm3] 3R_10651519_SNP [dm6]	C	G	3.704e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6475532	3R_6475532_SNP [dm3] 3R_10649810_SNP [dm6]	C	T	3.713e^-5	0.907	INTERGENIC
3R	6477238	3R_6477238_SNP [dm3] 3R_10651516_SNP [dm6]	C	T	3.738e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7760597	3R_7760597_SNP [dm3] 3R_11934875_SNP [dm6]	A	C	3.779e^-5	0.907	INTRON Cad87A
3R	6478496	3R_6478496_INS [dm3] 3R_10652774_INS [dm6]	A	AAAAACCTATGGAAAATTAC...	3.848e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	10415712	2R_10415712_SNP [dm3] 2R_14528207_SNP [dm6]	T	G	3.857e^-5	0.907	INTRON ttv
3R	6474624	3R_6474624_SNP [dm3] 3R_10648902_SNP [dm6]	G	T	3.917e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	6477712	3R_6477712_SNP [dm3] 3R_10651990_SNP [dm6]	T	A	4.038e^-5	0.907	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_prd
3R	7760718	3R_7760718_DEL [dm3] 3R_11934996_DEL [dm6]	ACATTTCTCTCAATTA...	A	4.045e^-5	0.907	INTRON Cad87A
3R	8512976	3R_8512976_SNP [dm3] 3R_12687254_SNP [dm6]	A	T	4.088e^-5	0.907	INTRON kar
2L	16433604	2L_16433604_SNP [dm3] 2L_16433604_SNP [dm6]	T	C	4.114e^-5	0.907	INTRON CG5888
3R	6478481	3R_6478481_SNP [dm3] 3R_10652759_SNP [dm6]	T	C	4.191e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478485	3R_6478485_INS [dm3] 3R_10652763_INS [dm6]	A	GC	4.191e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	15779220	2L_15779220_SNP [dm3] 2L_15779220_SNP [dm6]	C	A	4.291e^-5	0.907	INTERGENIC
3R	6492040	3R_6492040_SNP [dm3] 3R_10666318_SNP [dm6]	G	A	4.328e^-5	0.907	INTERGENIC
2R	8207748	2R_8207748_SNP [dm3] 2R_12320243_SNP [dm6]	C	T	4.351e^-5	0.907	UPSTREAM CG13163 DOWNSTREAM CR44316 INTERGENIC
2R	9134323	2R_9134323_SNP [dm3] 2R_13246818_SNP [dm6]	G	C	4.489e^-5	0.907	INTRON Mp20	TF binding site mE1_TFBS_cad
2L	954186	2L_954186_SNP [dm3] 2L_954186_SNP [dm6]	A	C	4.568e^-5	0.907	INTRON CG4341
3R	5413750	3R_5413750_SNP [dm3] 3R_9588028_SNP [dm6]	C	T	4.618e^-5	0.907	SYNONYMOUS_CODING P58IPK	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2R	7545055	2R_7545055_SNP [dm3] 2R_11657550_SNP [dm6]	T	C	4.648e^-5	0.907	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2814450	3L_2814450_SNP [dm3] 3L_2814450_SNP [dm6]	A	G	4.656e^-5	0.907	INTRON CG43444
3L	13894366	3L_13894366_SNP [dm3] 3L_13901266_SNP [dm6]	A	T	4.726e^-5	0.907	INTRON dysc
X	20927202	X_20927202_SNP [dm3] X_21056175_SNP [dm6]	A	G	4.800e^-5	0.907	INTRON bves	TF binding site BDTNP1_TFBS_dl
3L	15940117	3L_15940117_SNP [dm3] 3L_15947017_SNP [dm6]	T	C	4.906e^-5	0.907	SYNONYMOUS_CODING Pka-C3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18806830	X_18806830_SNP [dm3] X_18912797_SNP [dm6]	C	A	4.979e^-5	0.907	DOWNSTREAM CG7378 & 1 other INTERGENIC
3L	761985	3L_761985_SNP [dm3] 3L_761985_SNP [dm6]	G	T	5.009e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sbb
2R	6060449	2R_6060449_SNP [dm3] 2R_10172944_SNP [dm6]	T	A	5.139e^-5	0.907	INTRON KCNQ
3L	11174988	3L_11174988_SNP [dm3] 3L_11181888_SNP [dm6]	T	G	5.190e^-5	0.907	INTRON GlcAT-P
X	11846879	X_11846879_SNP [dm3] X_11952846_SNP [dm6]	T	A	5.207e^-5	0.907	INTRON cac	TF binding site mE1_TFBS_HSA
2R	16133794	2R_16133794_SNP [dm3] 2R_20246289_SNP [dm6]	C	T	5.209e^-5	0.907	UPSTREAM CG11208 INTRON ppk6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12824376	X_12824376_SNP [dm3] X_12930343_SNP [dm6]	T	G	5.247e^-5	0.907	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11100939	3L_11100939_SNP [dm3] 3L_11107839_SNP [dm6]	A	G	5.445e^-5	0.907	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
3R	21647829	3R_21647829_SNP [dm3] 3R_25822107_SNP [dm6]	C	T	5.460e^-5	0.907	INTERGENIC
3L	7824637	3L_7824637_SNP [dm3] 3L_7831537_SNP [dm6]	C	T	5.519e^-5	0.907	SYNONYMOUS_CODING Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_chinmo
3R	24246650	3R_24246650_SNP [dm3] 3R_28420928_SNP [dm6]	A	G	5.665e^-5	0.907	INTRON beat-VI
2R	12638614	2R_12638614_SNP [dm3] 2R_16751109_SNP [dm6]	T	G	5.669e^-5	0.907	NON_SYNONYMOUS_CODING Acp53C14c UPSTREAM Acp53Ea DOWNSTREAM unc-104
3R	24465853	3R_24465853_SNP [dm3] 3R_28640131_SNP [dm6]	C	T	5.768e^-5	0.907	INTERGENIC
2R	14090542	2R_14090542_SNP [dm3] 2R_18203037_SNP [dm6]	G	A	5.773e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13010424	X_13010424_SNP [dm3] X_13116391_SNP [dm6]	A	T	5.940e^-5	0.907	INTRON CG42237
X	6201926	X_6201926_SNP [dm3] X_6307893_SNP [dm6]	A	G	6.047e^-5	0.907	INTERGENIC
2L	11287143	2L_11287143_SNP [dm3] 2L_11287143_SNP [dm6]	G	A	6.059e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11287144	2L_11287144_SNP [dm3] 2L_11287144_SNP [dm6]	C	T	6.059e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2429275	X_2429275_SNP [dm3] X_2535242_SNP [dm6]	A	C	6.112e^-5	0.907	INTRON trol	TF binding site BDTNP1_TFBS_dl
2L	14359259	2L_14359259_SNP [dm3] 2L_14359259_SNP [dm6]	G	A	6.137e^-5	0.907	UTR_5_PRIME Pgant35A DOWNSTREAM CR43463 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1469712	3L_1469712_SNP [dm3] 3L_1469712_SNP [dm6]	G	C	6.159e^-5	0.907	DOWNSTREAM rho INTRON Ptp61F
2R	1919547	2R_1919547_SNP [dm3] 2R_6032042_SNP [dm6]	T	C	6.162e^-5	0.907	INTRON SCAP
2R	14704754	2R_14704754_SNP [dm3] 2R_18817249_SNP [dm6]	C	T	6.243e^-5	0.907	UPSTREAM CG15096 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12459431	2R_12459431_DEL [dm3] 2R_16571926_DEL [dm6]	CTTATTAATAGATTCTGCTA...	C	6.259e^-5	0.907	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3R	6479145	3R_6479145_SNP [dm3] 3R_10653423_SNP [dm6]	C	G	6.298e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	15834034	2R_15834034_SNP [dm3] 2R_19946529_SNP [dm6]	G	A	6.323e^-5	0.907	SPLICE_SITE_REGION CG42691 UPSTREAM CG42690 & 1 other INTRON CG42691	TF binding site BDTNP1_TFBS_dl
3L	22849982	3L_22849982_SNP [dm3] 3L_22856882_SNP [dm6]	G	A	6.334e^-5	0.907	UPSTREAM CG32459 INTERGENIC
X	11846878	X_11846878_SNP [dm3] X_11952845_SNP [dm6]	T	C	6.385e^-5	0.907	INTRON cac	TF binding site mE1_TFBS_HSA
2L	18373589	2L_18373589_SNP [dm3] 2L_18373589_SNP [dm6]	G	C	6.519e^-5	0.907	INTRON Fas3
X	11847047	X_11847047_SNP [dm3] X_11953014_SNP [dm6]	A	T	6.622e^-5	0.907	INTRON cac	TF binding site mE1_TFBS_HSA
3R	7760600	3R_7760600_SNP [dm3] 3R_11934878_SNP [dm6]	G	A	6.648e^-5	0.907	INTRON Cad87A
2R	20473469	2R_20473469_SNP [dm3] 2R_24585946_SNP [dm6]	G	A	6.714e^-5	0.907	INTRON pio
2L	7517895	2L_7517895_SNP [dm3] 2L_7517895_SNP [dm6]	C	T	6.749e^-5	0.907	INTRON RapGAP1	TF binding site mE1_TFBS_chinmo
3R	24246687	3R_24246687_SNP [dm3] 3R_28420965_SNP [dm6]	A	G	6.892e^-5	0.907	INTRON beat-VI
3R	8378821	3R_8378821_SNP [dm3] 3R_12553099_SNP [dm6]	G	A	6.940e^-5	0.907	SYNONYMOUS_CODING Octbeta2R	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10824992	2R_10824992_SNP [dm3] 2R_14937487_SNP [dm6]	G	A	6.978e^-5	0.907	SYNONYMOUS_CODING Lap1	TF binding site mE1_TFBS_sens
3L	2577647	3L_2577647_DEL [dm3] 3L_2577647_DEL [dm6]	ACTTGTTCAAAA...	A	7.001e^-5	0.907	INTRON msn	regulatory region REDfly_CRMs
2R	7545061	2R_7545061_SNP [dm3] 2R_11657556_SNP [dm6]	G	T	7.019e^-5	0.907	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26686155	3R_26686155_SNP [dm3] 3R_30860433_SNP [dm6]	G	A	7.036e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12491430	2R_12491430_SNP [dm3] 2R_16603925_SNP [dm6]	G	A	7.121e^-5	0.907	INTRON CG8303
2R	7545054	2R_7545054_SNP [dm3] 2R_11657549_SNP [dm6]	T	G	7.352e^-5	0.907	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9871085	2R_9871085_SNP [dm3] 2R_13983580_SNP [dm6]	G	T	7.377e^-5	0.907	UTR_5_PRIME CG8067 UPSTREAM CG8067 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	10661693	2L_10661693_SNP [dm3] 2L_10661693_SNP [dm6]	T	A	7.464e^-5	0.907	UPSTREAM CG31871 INTERGENIC
3R	16163339	3R_16163339_SNP [dm3] 3R_20337617_SNP [dm6]	C	A	7.467e^-5	0.907	INTERGENIC
2R	5519895	2R_5519895_SNP [dm3] 2R_9632390_SNP [dm6]	T	G	7.490e^-5	0.907	INTRON Mmp2	TF binding site BDTNP1_TFBS_twi
3L	22854907	3L_22854907_DEL [dm3] 3L_22861807_DEL [dm6]	GATCAATG	G	7.498e^-5	0.907	DOWNSTREAM CG13239 INTERGENIC
2R	6060444	2R_6060444_SNP [dm3] 2R_10172939_SNP [dm6]	C	T	7.515e^-5	0.907	INTRON KCNQ
2R	6060445	2R_6060445_SNP [dm3] 2R_10172940_SNP [dm6]	C	T	7.515e^-5	0.907	INTRON KCNQ
2L	954279	2L_954279_SNP [dm3] 2L_954279_SNP [dm6]	A	G	7.535e^-5	0.907	INTRON CG4341
2L	3105577	2L_3105577_SNP [dm3] 2L_3105577_SNP [dm6]	G	C	7.606e^-5	0.907	INTRON toc
2L	13728659	2L_13728659_SNP [dm3] 2L_13728659_SNP [dm6]	T	C	7.828e^-5	0.907	INTERGENIC
3L	13894536	3L_13894536_SNP [dm3] 3L_13901436_SNP [dm6]	G	A	7.962e^-5	0.907	INTRON dysc
3R	26246636	3R_26246636_SNP [dm3] 3R_30420914_SNP [dm6]	T	A	7.963e^-5	0.907	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	13894418	3L_13894418_SNP [dm3] 3L_13901318_SNP [dm6]	G	A	7.977e^-5	0.907	INTRON dysc
3L	9139858	3L_9139858_INS [dm3] 3L_9146758_INS [dm6]	G	GCATG	7.991e^-5	0.907	UTR_3_PRIME Rdl	TF binding site BDTNP1_TFBS_twi
3R	6481606	3R_6481606_SNP [dm3] 3R_10655884_SNP [dm6]	T	G	8.025e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14305893	3R_14305893_SNP [dm3] 3R_18480171_SNP [dm6]	C	G	8.093e^-5	0.907	INTRON fru	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	15237186	2L_15237186_SNP [dm3] 2L_15237186_SNP [dm6]	C	T	8.117e^-5	0.907	INTRON ZnT35C
3R	6480564	3R_6480564_SNP [dm3] 3R_10654842_SNP [dm6]	C	T	8.136e^-5	0.907	INTERGENIC
X	3287796	X_3287796_SNP [dm3] X_3393763_SNP [dm6]	C	T	8.208e^-5	0.907	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_cad
2L	12925293	2L_12925293_SNP [dm3] 2L_12925293_SNP [dm6]	T	A	8.304e^-5	0.907	UTR_3_PRIME ACXA UPSTREAM ACXE
X	16785642	X_16785642_SNP [dm3] X_16891609_SNP [dm6]	G	A	8.342e^-5	0.907	DOWNSTREAM CG13002 INTERGENIC
X	21435565	X_21435565_SNP [dm3] X_21564538_SNP [dm6]	T	C	8.350e^-5	0.907	INTERGENIC
2R	12491543	2R_12491543_SNP [dm3] 2R_16604038_SNP [dm6]	T	C	8.355e^-5	0.907	INTRON CG8303	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	8207465	2R_8207465_SNP [dm3] 2R_12319960_SNP [dm6]	G	C	8.359e^-5	0.907	DOWNSTREAM CR44316 INTERGENIC
2L	10661690	2L_10661690_SNP [dm3] 2L_10661690_SNP [dm6]	A	T	8.370e^-5	0.907	UPSTREAM CG31871 INTERGENIC
3R	19175163	3R_19175163_SNP [dm3] 3R_23349441_SNP [dm6]	G	C	8.401e^-5	0.907	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18234102	3R_18234102_SNP [dm3] 3R_22408380_SNP [dm6]	C	T	8.406e^-5	0.907	SYNONYMOUS_CODING CG13855 DOWNSTREAM CG13850
3L	4315310	3L_4315310_SNP [dm3] 3L_4315310_SNP [dm6]	C	A	8.410e^-5	0.907	SYNONYMOUS_CODING Claspin
2L	15246481	2L_15246481_SNP [dm3] 2L_15246481_SNP [dm6]	C	T	8.513e^-5	0.907	UPSTREAM ZnT35C INTRON ZnT35C
X	14295229	X_14295229_SNP [dm3] X_14401196_SNP [dm6]	A	C	8.615e^-5	0.907	INTRON dpr8
2L	10661685	2L_10661685_SNP [dm3] 2L_10661685_SNP [dm6]	G	C	8.830e^-5	0.907	UPSTREAM CG31871 INTERGENIC
X	12833027	X_12833027_SNP [dm3] X_12938994_SNP [dm6]	A	G	8.899e^-5	0.907	START_GAINED fne UTR_5_PRIME fne INTRON fne	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8314979	3L_8314979_SNP [dm3] 3L_8321879_SNP [dm6]	T	C	8.907e^-5	0.907	SYNONYMOUS_CODING CG13670
2L	12537525	2L_12537525_SNP [dm3] 2L_12537525_SNP [dm6]	G	C	9.027e^-5	0.907	INTRON bun
2L	18373578	2L_18373578_SNP [dm3] 2L_18373578_SNP [dm6]	T	G	9.060e^-5	0.907	INTRON Fas3
2L	9299168	2L_9299168_SNP [dm3] 2L_9299168_SNP [dm6]	T	A	9.140e^-5	0.907	UTR_3_PRIME Ggamma30A
X	5805604	X_5805604_SNP [dm3] X_5911571_SNP [dm6]	G	A	9.150e^-5	0.907	UTR_3_PRIME CG12236 INTRON CG12236
3L	6001607	3L_6001607_SNP [dm3] 3L_6008507_SNP [dm6]	T	C	9.217e^-5	0.907	DOWNSTREAM alphaKap4 INTRON PVRAP
3R	27225737	3R_27225737_SNP [dm3] 3R_31400015_SNP [dm6]	C	T	9.280e^-5	0.907	SYNONYMOUS_CODING Gcn2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	14175969	3R_14175969_SNP [dm3] 3R_18350247_SNP [dm6]	T	C	9.312e^-5	0.907	INTRON CG15803
3L	8315282	3L_8315282_SNP [dm3] 3L_8322182_SNP [dm6]	C	T	9.368e^-5	0.907	SYNONYMOUS_CODING CG13670
3L	14082735	3L_14082735_SNP [dm3] 3L_14089635_SNP [dm6]	A	G	9.371e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3134872	3L_3134872_SNP [dm3] 3L_3134872_SNP [dm6]	G	T	9.562e^-5	0.907	UPSTREAM CG11537 INTRON CG11537
2L	14470254	2L_14470254_DEL [dm3] 2L_14470254_DEL [dm6]	AAA	A	9.683e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18755829	X_18755829_DEL [dm3] X_18861796_DEL [dm6]	GC	G	9.753e^-5	0.907	UTR_3_PRIME CG32544 & 1 other
3R	21604320	3R_21604320_SNP [dm3] 3R_25778598_SNP [dm6]	A	C	9.832e^-5	0.907	UPSTREAM CG4956 INTERGENIC
3R	21647504	3R_21647504_SNP [dm3] 3R_25821782_SNP [dm6]	C	T	9.863e^-5	0.907	INTERGENIC
2R	3197196	2R_3197196_SNP [dm3] 2R_7309691_SNP [dm6]	T	C	9.882e^-5	0.907	INTERGENIC
X	6299767	X_6299767_SNP [dm3] X_6405734_SNP [dm6]	C	T	9.955e^-5	0.907	INTERGENIC
3L	8313256	3L_8313256_SNP [dm3] 3L_8320156_SNP [dm6]	T	C	9.963e^-5	0.907	UPSTREAM CG13670 INTERGENIC
2R	12459386	2R_12459386_SNP [dm3] 2R_16571881_SNP [dm6]	C	A	9.987e^-5	0.907	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2L	19194434	2L_19194434_SNP [dm3] 2L_19194434_SNP [dm6]	C	A	1.002e^-4	0.907	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	17361511	2L_17361511_SNP [dm3] 2L_17361511_SNP [dm6]	C	T	1.016e^-4	0.907	EXON CR44346
2L	809705	2L_809705_SNP [dm3] 2L_809705_SNP [dm6]	C	T	1.016e^-4	0.907	UPSTREAM Nnf1b INTERGENIC
2L	15779227	2L_15779227_SNP [dm3] 2L_15779227_SNP [dm6]	C	T	1.017e^-4	0.907	INTERGENIC
3R	6478518	3R_6478518_SNP [dm3] 3R_10652796_SNP [dm6]	A	G	1.023e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	15237222	2L_15237222_SNP [dm3] 2L_15237222_SNP [dm6]	A	T	1.026e^-4	0.907	INTRON ZnT35C
3L	10655324	3L_10655324_SNP [dm3] 3L_10662224_SNP [dm6]	T	C	1.033e^-4	0.907	SYNONYMOUS_CODING CG8003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10388656	X_10388656_SNP [dm3] X_10494623_SNP [dm6]	G	C	1.038e^-4	0.907	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21435221	X_21435221_SNP [dm3] X_21564194_SNP [dm6]	A	C	1.038e^-4	0.907	INTERGENIC
X	16415213	X_16415213_INS [dm3] X_16521180_INS [dm6]	A	ATATTCGATATA...	1.041e^-4	0.907	INTRON para
3R	21647534	3R_21647534_SNP [dm3] 3R_25821812_SNP [dm6]	T	G	1.046e^-4	0.907	INTERGENIC
2L	18290464	2L_18290464_SNP [dm3] 2L_18290464_SNP [dm6]	C	T	1.050e^-4	0.907	DOWNSTREAM CG43362 EXON CR44696
2R	18120027	2R_18120027_SNP [dm3] 2R_22232522_SNP [dm6]	A	G	1.051e^-4	0.907	INTERGENIC
X	21442148	X_21442148_SNP [dm3] X_21571121_SNP [dm6]	G	C	1.054e^-4	0.907	INTERGENIC
3L	9086856	3L_9086856_SNP [dm3] 3L_9093756_SNP [dm6]	A	T	1.059e^-4	0.907	INTRON CG32032
2L	18292104	2L_18292104_SNP [dm3] 2L_18292104_SNP [dm6]	T	C	1.064e^-4	0.907	UPSTREAM CR44696 & 2 others DOWNSTREAM CR44693 INTERGENIC
X	5691285	X_5691285_SNP [dm3] X_5797252_SNP [dm6]	A	G	1.071e^-4	0.907	INTERGENIC
2R	9134296	2R_9134296_SNP [dm3] 2R_13246791_SNP [dm6]	A	T	1.072e^-4	0.907	INTRON Mp20	TF binding site mE1_TFBS_cad
2R	9134331	2R_9134331_SNP [dm3] 2R_13246826_SNP [dm6]	G	C	1.072e^-4	0.907	INTRON Mp20	TF binding site mE1_TFBS_cad
3L	8453256	3L_8453256_SNP [dm3] 3L_8460156_SNP [dm6]	T	C	1.086e^-4	0.907	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	14082740	3L_14082740_SNP [dm3] 3L_14089640_SNP [dm6]	A	T	1.087e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8731736	2R_8731736_SNP [dm3] 2R_12844231_SNP [dm6]	G	C	1.090e^-4	0.907	SYNONYMOUS_CODING Or49b	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12824427	X_12824427_SNP [dm3] X_12930394_SNP [dm6]	A	C	1.095e^-4	0.907	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12459508	2R_12459508_SNP [dm3] 2R_16572003_SNP [dm6]	T	C	1.095e^-4	0.907	UPSTREAM CG4927 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2L	14513742	2L_14513742_SNP [dm3] 2L_14513742_SNP [dm6]	C	G	1.099e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	16433603	2L_16433603_SNP [dm3] 2L_16433603_SNP [dm6]	C	T	1.108e^-4	0.907	INTRON CG5888
3R	6474654	3R_6474654_SNP [dm3] 3R_10648932_SNP [dm6]	C	T	1.115e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	11848059	X_11848059_SNP [dm3] X_11954026_SNP [dm6]	A	C	1.128e^-4	0.907	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9176776	3L_9176776_SNP [dm3] 3L_9183676_SNP [dm6]	C	A	1.128e^-4	0.907	INTERGENIC
3R	27229974	3R_27229974_SNP [dm3] 3R_31404252_SNP [dm6]	C	T	1.138e^-4	0.907	NON_SYNONYMOUS_CODING CG11337 UPSTREAM Gprk2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
X	20611671	X_20611671_SNP [dm3] X_20740644_SNP [dm6]	G	C	1.153e^-4	0.907	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	10656440	2L_10656440_SNP [dm3] 2L_10656440_SNP [dm6]	C	T	1.154e^-4	0.907	INTERGENIC
2L	16031766	2L_16031766_SNP [dm3] 2L_16031766_SNP [dm6]	T	A	1.157e^-4	0.907	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
2R	9134356	2R_9134356_DEL [dm3] 2R_13246851_DEL [dm6]	ATTAC	A	1.158e^-4	0.907	INTRON Mp20	TF binding site mE1_TFBS_cad
2L	18325308	2L_18325308_SNP [dm3] 2L_18325308_SNP [dm6]	G	T	1.160e^-4	0.907	INTRON Fas3
2L	16031780	2L_16031780_SNP [dm3] 2L_16031780_SNP [dm6]	A	C	1.190e^-4	0.907	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
X	8577473	X_8577473_SNP [dm3] X_8683440_SNP [dm6]	A	G	1.193e^-4	0.907	INTRON CG11284	TF binding site mE1_TFBS_sens
X	11846389	X_11846389_SNP [dm3] X_11952356_SNP [dm6]	T	C	1.196e^-4	0.907	INTRON cac
2R	11060411	2R_11060411_SNP [dm3] 2R_15172906_SNP [dm6]	T	C	1.198e^-4	0.907	INTRON igl	TF binding site mE1_TFBS_HSA
X	21430218	X_21430218_DEL [dm3] X_21559191_DEL [dm6]	GCCACCACAG	G	1.198e^-4	0.907	INTERGENIC
2R	6669197	2R_6669197_SNP [dm3] 2R_10781692_SNP [dm6]	C	A	1.199e^-4	0.907	INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	14359257	2L_14359257_SNP [dm3] 2L_14359257_SNP [dm6]	G	C	1.214e^-4	0.907	UTR_5_PRIME Pgant35A DOWNSTREAM CR43463 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1491923	3L_1491923_SNP [dm3] 3L_1491923_SNP [dm6]	G	A	1.223e^-4	0.907	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	15935482	2L_15935482_SNP [dm3] 2L_15935482_SNP [dm6]	C	A	1.227e^-4	0.907	INTRON beat-Ib
2R	9134321	2R_9134321_SNP [dm3] 2R_13246816_SNP [dm6]	T	C	1.233e^-4	0.907	INTRON Mp20	TF binding site mE1_TFBS_cad
2R	9134339	2R_9134339_SNP [dm3] 2R_13246834_SNP [dm6]	G	T	1.233e^-4	0.907	INTRON Mp20	TF binding site mE1_TFBS_cad
3R	20919879	3R_20919879_SNP [dm3] 3R_25094157_SNP [dm6]	T	A	1.236e^-4	0.907	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	4953537	2L_4953537_SNP [dm3] 2L_4953537_SNP [dm6]	C	A	1.238e^-4	0.907	UPSTREAM Jon25Bii DOWNSTREAM Jon25Bi INTERGENIC
3R	14175974	3R_14175974_SNP [dm3] 3R_18350252_SNP [dm6]	C	T	1.239e^-4	0.907	INTRON CG15803
3R	5757246	3R_5757246_SNP [dm3] 3R_9931524_SNP [dm6]	C	G	1.241e^-4	0.907	INTRON Glut4EF
2R	10415700	2R_10415700_INS [dm3] 2R_14528195_INS [dm6]	T	TT	1.241e^-4	0.907	INTRON ttv
2L	19194436	2L_19194436_SNP [dm3] 2L_19194436_SNP [dm6]	A	G	1.244e^-4	0.907	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	12769012	X_12769012_SNP [dm3] X_12874979_SNP [dm6]	A	C	1.245e^-4	0.907	INTRON Pde9
2L	13106494	2L_13106494_SNP [dm3] 2L_13106494_SNP [dm6]	A	T	1.252e^-4	0.907	UPSTREAM CG5142 INTERGENIC
2L	15287203	2L_15287203_SNP [dm3] 2L_15287203_SNP [dm6]	T	C	1.261e^-4	0.907	INTERGENIC
3R	27224956	3R_27224956_SNP [dm3] 3R_31399234_SNP [dm6]	T	C	1.278e^-4	0.907	SYNONYMOUS_CODING Gcn2	TF binding site mE1_TFBS_cad
2L	15233392	2L_15233392_SNP [dm3] 2L_15233392_SNP [dm6]	A	G	1.291e^-4	0.907	INTRON ZnT35C
X	8884921	X_8884921_SNP [dm3] X_8990888_SNP [dm6]	T	C	1.302e^-4	0.907	INTRON rdgA & 1 other
X	15560072	X_15560072_SNP [dm3] X_15666039_SNP [dm6]	C	T	1.303e^-4	0.907	UPSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	22850126	3L_22850126_SNP [dm3] 3L_22857026_SNP [dm6]	T	A	1.306e^-4	0.907	UPSTREAM CG32459 INTERGENIC
2L	4953763	2L_4953763_SNP [dm3] 2L_4953763_SNP [dm6]	C	T	1.315e^-4	0.907	UPSTREAM Jon25Bii DOWNSTREAM Jon25Bi INTERGENIC
2L	13629474	2L_13629474_SNP [dm3] 2L_13629474_SNP [dm6]	G	T	1.318e^-4	0.907	INTRON kuz
2L	22034519	2L_22034519_SNP [dm3] 2L_22034519_SNP [dm6]	T	C	1.328e^-4	0.907	DOWNSTREAM CR45335 INTERGENIC
2L	9393495	2L_9393495_DEL [dm3] 2L_9393495_DEL [dm6]	AA	A	1.336e^-4	0.907	INTRON Shawl
2R	10583896	2R_10583896_SNP [dm3] 2R_14696391_SNP [dm6]	A	G	1.336e^-4	0.907	INTRON mspo
2R	12568663	2R_12568663_SNP [dm3] 2R_16681158_SNP [dm6]	T	C	1.347e^-4	0.907	SYNONYMOUS_CODING CG30463
3L	6632300	3L_6632300_SNP [dm3] 3L_6639200_SNP [dm6]	A	T	1.347e^-4	0.907	INTERGENIC
X	5690379	X_5690379_INS [dm3] X_5796346_INS [dm6]	T	TCTAAATT	1.363e^-4	0.907	INTERGENIC
2R	6758025	2R_6758025_SNP [dm3] 2R_10870520_SNP [dm6]	A	C	1.378e^-4	0.907	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10654926	3L_10654926_SNP [dm3] 3L_10661826_SNP [dm6]	A	G	1.394e^-4	0.907	UPSTREAM CG32066 INTRON CG8003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17625182	2R_17625182_SNP [dm3] 2R_21737677_SNP [dm6]	T	C	1.405e^-4	0.907	INTERGENIC
3L	1491832	3L_1491832_SNP [dm3] 3L_1491832_SNP [dm6]	G	A	1.411e^-4	0.907	SYNONYMOUS_CODING CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9009444	3L_9009444_SNP [dm3] 3L_9016344_SNP [dm6]	C	G	1.431e^-4	0.907	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	16433766	2L_16433766_SNP [dm3] 2L_16433766_SNP [dm6]	G	A	1.432e^-4	0.907	INTRON CG5888
3R	7910501	3R_7910501_SNP [dm3] 3R_12084779_SNP [dm6]	T	A	1.450e^-4	0.907	INTRON CG14741
2L	6146573	2L_6146573_SNP [dm3] 2L_6146573_SNP [dm6]	G	A	1.452e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	6279954	X_6279954_SNP [dm3] X_6385921_SNP [dm6]	C	T	1.469e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16163281	3R_16163281_SNP [dm3] 3R_20337559_SNP [dm6]	C	T	1.469e^-4	0.907	INTERGENIC
3R	2586734	3R_2586734_SNP [dm3] 3R_6761012_SNP [dm6]	A	G	1.469e^-4	0.907	DOWNSTREAM CR45593 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Stat92E
2R	18176647	2R_18176647_SNP [dm3] 2R_22289142_SNP [dm6]	A	G	1.473e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12583786	2L_12583786_SNP [dm3] 2L_12583786_SNP [dm6]	T	A	1.473e^-4	0.907	DOWNSTREAM CR44596 & 1 other INTERGENIC
2R	10324024	2R_10324024_SNP [dm3] 2R_14436519_SNP [dm6]	G	C	1.473e^-4	0.907	INTRON Oaz	TF binding site mE1_TFBS_cad
2L	9036519	2L_9036519_SNP [dm3] 2L_9036519_SNP [dm6]	T	A	1.477e^-4	0.907	INTERGENIC
3R	19404429	3R_19404429_SNP [dm3] 3R_23578707_SNP [dm6]	T	C	1.484e^-4	0.907	SYNONYMOUS_CODING beat-IV
X	6704060	X_6704060_SNP [dm3] X_6810027_SNP [dm6]	C	A	1.485e^-4	0.907	SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1455098	3L_1455098_SNP [dm3] 3L_1455098_SNP [dm6]	T	G	1.487e^-4	0.907	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15202209	2L_15202209_SNP [dm3] 2L_15202209_SNP [dm6]	G	C	1.489e^-4	0.907	UPSTREAM CR43357 & 1 other INTERGENIC
X	12991247	X_12991247_SNP [dm3] X_13097214_SNP [dm6]	A	C	1.494e^-4	0.907	INTRON CG43313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8147360	3R_8147360_SNP [dm3] 3R_12321638_SNP [dm6]	G	C	1.499e^-4	0.907	DOWNSTREAM tRNA:CR31432 INTERGENIC
X	19312020	X_19312020_SNP [dm3] X_19417987_SNP [dm6]	T	C	1.507e^-4	0.907	INTRON kek5
2R	6740800	2R_6740800_SNP [dm3] 2R_10853295_SNP [dm6]	T	C	1.510e^-4	0.907	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15830952	2R_15830952_SNP [dm3] 2R_19943447_SNP [dm6]	C	A	1.510e^-4	0.907	DOWNSTREAM CG43195 INTERGENIC
2L	15220604	2L_15220604_SNP [dm3] 2L_15220604_SNP [dm6]	A	G	1.513e^-4	0.907	INTERGENIC
3L	9961943	3L_9961943_SNP [dm3] 3L_9968843_SNP [dm6]	G	T	1.525e^-4	0.907	UTR_5_PRIME Nc UPSTREAM CG6685	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10010517	2R_10010517_SNP [dm3] 2R_14123012_SNP [dm6]	G	A	1.525e^-4	0.907	INTRON Prosap	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8900205	2R_8900205_SNP [dm3] 2R_13012700_SNP [dm6]	A	G	1.532e^-4	0.907	INTERGENIC
3L	13894387	3L_13894387_SNP [dm3] 3L_13901287_SNP [dm6]	A	G	1.545e^-4	0.907	INTRON dysc
2R	8731731	2R_8731731_SNP [dm3] 2R_12844226_SNP [dm6]	C	T	1.548e^-4	0.907	SYNONYMOUS_CODING Or49b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7910496	3R_7910496_SNP [dm3] 3R_12084774_SNP [dm6]	G	A	1.551e^-4	0.907	INTRON CG14741
3R	26246629	3R_26246629_DEL [dm3] 3R_30420907_DEL [dm6]	TT	T	1.551e^-4	0.907	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	26246649	3R_26246649_SNP [dm3] 3R_30420927_SNP [dm6]	T	C	1.551e^-4	0.907	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	12646996	2R_12646996_SNP [dm3] 2R_16759491_SNP [dm6]	T	A	1.563e^-4	0.907	INTRON unc-104
3R	6575561	3R_6575561_SNP [dm3] 3R_10749839_SNP [dm6]	A	G	1.569e^-4	0.907	INTRON TkR86C
2L	9783859	2L_9783859_SNP [dm3] 2L_9783859_SNP [dm6]	G	C	1.575e^-4	0.907	INTRON IP3K1
X	5215947	X_5215947_SNP [dm3] X_5321914_SNP [dm6]	A	G	1.579e^-4	0.907	SYNONYMOUS_CODING Rnp4F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	26246640	3R_26246640_SNP [dm3] 3R_30420918_SNP [dm6]	G	T	1.580e^-4	0.907	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	5306086	X_5306086_SNP [dm3] X_5412053_SNP [dm6]	A	G	1.581e^-4	0.907	DOWNSTREAM spoon INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9147192	3R_9147192_SNP [dm3] 3R_13321470_SNP [dm6]	G	C	1.585e^-4	0.907	INTERGENIC
2R	6674120	2R_6674120_SNP [dm3] 2R_10786615_SNP [dm6]	G	C	1.586e^-4	0.907	UPSTREAM CR44300 & 1 other INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6466305	3L_6466305_SNP [dm3] 3L_6473205_SNP [dm6]	C	T	1.586e^-4	0.907	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18391259	2L_18391259_SNP [dm3] 2L_18391259_SNP [dm6]	G	A	1.587e^-4	0.907	SYNONYMOUS_CODING Fas3 DOWNSTREAM Fas3 INTRON Fas3
2L	11213150	2L_11213150_SNP [dm3] 2L_11213150_SNP [dm6]	A	T	1.589e^-4	0.907	INTRON ab
2L	18611546	2L_18611546_SNP [dm3] 2L_18611546_SNP [dm6]	G	A	1.596e^-4	0.907	INTRON Atac2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15936825	3L_15936825_SNP [dm3] 3L_15943725_SNP [dm6]	G	A	1.597e^-4	0.907	INTRON Pka-C3
2L	18324657	2L_18324657_SNP [dm3] 2L_18324657_SNP [dm6]	T	A	1.604e^-4	0.907	INTRON Fas3
3R	3800854	3R_3800854_SNP [dm3] 3R_7975132_SNP [dm6]	A	T	1.610e^-4	0.907	SPLICE_SITE_REGION CD98hc INTRON CD98hc	TF binding site mE1_TFBS_cad
2R	9412047	2R_9412047_SNP [dm3] 2R_13524542_SNP [dm6]	A	G	1.616e^-4	0.907	UPSTREAM CG13332 INTRON Vmat
2L	11213083	2L_11213083_SNP [dm3] 2L_11213083_SNP [dm6]	G	T	1.625e^-4	0.907	INTRON ab
X	18390139	X_18390139_SNP [dm3] X_18496106_SNP [dm6]	G	A	1.631e^-4	0.907	UTR_3_PRIME GalNAc-T2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12385860	2L_12385860_DEL [dm3] 2L_12385860_DEL [dm6]	TCA	T	1.637e^-4	0.907	INTRON bru-2
2R	18793793	2R_18793793_SNP [dm3] 2R_22906270_SNP [dm6]	C	A	1.643e^-4	0.907	INTRON nahoda
3R	26398603	3R_26398603_SNP [dm3] 3R_30572881_SNP [dm6]	T	C	1.645e^-4	0.907	INTRON tmod
2L	20358214	2L_20358214_SNP [dm3] 2L_20358214_SNP [dm6]	T	C	1.646e^-4	0.907	NON_SYNONYMOUS_CODING RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad
X	4878193	X_4878193_SNP [dm3] X_4984160_SNP [dm6]	T	C	1.648e^-4	0.907	INTRON CR44833	regulatory region REDfly_CRMs
2L	12925608	2L_12925608_SNP [dm3] 2L_12925608_SNP [dm6]	G	T	1.649e^-4	0.907	UPSTREAM ACXE DOWNSTREAM ACXA INTERGENIC
2R	12619901	2R_12619901_INS [dm3] 2R_16732396_INS [dm6]	A	ACAATA	1.659e^-4	0.907	UTR_5_PRIME CG30463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	13893337	3L_13893337_SNP [dm3] 3L_13900237_SNP [dm6]	A	G	1.661e^-4	0.907	INTRON dysc
3L	7749863	3L_7749863_SNP [dm3] 3L_7756763_SNP [dm6]	A	C	1.672e^-4	0.907	UTR_5_PRIME CG32373 INTRON CG32373
2L	10259719	2L_10259719_SNP [dm3] 2L_10259719_SNP [dm6]	A	G	1.673e^-4	0.907	UTR_5_PRIME Pten INTRON Pten	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_Kr
3L	15936937	3L_15936937_SNP [dm3] 3L_15943837_SNP [dm6]	C	A	1.697e^-4	0.907	INTRON Pka-C3
3L	11100840	3L_11100840_SNP [dm3] 3L_11107740_SNP [dm6]	C	G	1.698e^-4	0.907	UPSTREAM CG12522 & 1 other INTERGENIC
X	16667520	X_16667520_SNP [dm3] X_16773487_SNP [dm6]	G	T	1.709e^-4	0.907	INTRON if	TF binding site BDTNP1_TFBS_da
X	12849231	X_12849231_INS [dm3] X_12955198_INS [dm6]	A	AGAAACACA	1.719e^-4	0.907	INTRON hec
2R	17660182	2R_17660182_SNP [dm3] 2R_21772677_SNP [dm6]	C	T	1.722e^-4	0.907	UPSTREAM CG4021 INTERGENIC
3L	1103306	3L_1103306_SNP [dm3] 3L_1103306_SNP [dm6]	G	C	1.734e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1120650	3L_1120650_SNP [dm3] 3L_1120650_SNP [dm6]	A	G	1.764e^-4	0.907	INTERGENIC
3L	11696415	3L_11696415_INS [dm3] 3L_11703315_INS [dm6]	T	TTGTTG	1.769e^-4	0.907	INTRON CG11658
X	12824355	X_12824355_SNP [dm3] X_12930322_SNP [dm6]	T	C	1.772e^-4	0.907	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12718311	3L_12718311_SNP [dm3] 3L_12725211_SNP [dm6]	A	G	1.772e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7211619	2L_7211619_INS [dm3] 2L_7211619_INS [dm6]	A	AA	1.774e^-4	0.907	INTRON CG13784	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16190835	2L_16190835_INS [dm3] 2L_16190835_INS [dm6]	A	AA	1.774e^-4	0.907	DOWNSTREAM Ca-alpha1D INTERGENIC
X	15566390	X_15566390_SNP [dm3] X_15672357_SNP [dm6]	A	G	1.776e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10324022	2R_10324022_SNP [dm3] 2R_14436517_SNP [dm6]	G	T	1.777e^-4	0.907	INTRON Oaz	TF binding site mE1_TFBS_cad
3L	12858005	3L_12858005_SNP [dm3] 3L_12864905_SNP [dm6]	A	G	1.788e^-4	0.907	INTERGENIC
2L	12925364	2L_12925364_SNP [dm3] 2L_12925364_SNP [dm6]	T	A	1.789e^-4	0.907	UTR_3_PRIME ACXA UPSTREAM ACXE
3L	9873427	3L_9873427_SNP [dm3] 3L_9880327_SNP [dm6]	A	G	1.794e^-4	0.907	SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo
2R	11629560	2R_11629560_DEL [dm3] 2R_15742055_DEL [dm6]	TTT	T	1.796e^-4	0.907	INTRON CG30089
2L	3372508	2L_3372508_DEL [dm3] 2L_3372508_DEL [dm6]	CATAC	C	1.806e^-4	0.907	INTRON CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	18287899	2L_18287899_SNP [dm3] 2L_18287899_SNP [dm6]	C	T	1.808e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6496839	3R_6496839_SNP [dm3] 3R_10671117_SNP [dm6]	T	G	1.810e^-4	0.907	INTERGENIC
3L	13894453	3L_13894453_SNP [dm3] 3L_13901353_SNP [dm6]	A	G	1.811e^-4	0.907	INTRON dysc
3R	26387276	3R_26387276_SNP [dm3] 3R_30561554_SNP [dm6]	T	A	1.816e^-4	0.907	INTRON tmod
3L	2577633	3L_2577633_SNP [dm3] 3L_2577633_SNP [dm6]	A	C	1.821e^-4	0.907	INTRON msn	regulatory region REDfly_CRMs
3R	20259750	3R_20259750_SNP [dm3] 3R_24434028_SNP [dm6]	T	C	1.833e^-4	0.907	INTRON nAChRalpha1
X	1931005	X_1931005_SNP [dm3] X_2036972_SNP [dm6]	T	C	1.834e^-4	0.907	UPSTREAM Actn INTRON Actn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	22889975	3L_22889975_SNP [dm3] 3L_22896875_SNP [dm6]	A	T	1.835e^-4	0.907	DOWNSTREAM CR44688 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2577661	3L_2577661_SNP [dm3] 3L_2577661_SNP [dm6]	G	C	1.843e^-4	0.907	INTRON msn	regulatory region REDfly_CRMs
3L	2577637	3L_2577637_SNP [dm3] 3L_2577637_SNP [dm6]	A	G	1.845e^-4	0.907	INTRON msn	regulatory region REDfly_CRMs
2L	18287895	2L_18287895_SNP [dm3] 2L_18287895_SNP [dm6]	C	A	1.845e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6575418	3R_6575418_SNP [dm3] 3R_10749696_SNP [dm6]	C	T	1.850e^-4	0.907	INTRON TkR86C
2L	18288750	2L_18288750_SNP [dm3] 2L_18288750_SNP [dm6]	G	A	1.864e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	1919565	2R_1919565_SNP [dm3] 2R_6032060_SNP [dm6]	T	A	1.872e^-4	0.907	INTRON SCAP
2L	15233108	2L_15233108_SNP [dm3] 2L_15233108_SNP [dm6]	A	T	1.873e^-4	0.907	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	15233110	2L_15233110_SNP [dm3] 2L_15233110_SNP [dm6]	T	C	1.873e^-4	0.907	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	15233113	2L_15233113_SNP [dm3] 2L_15233113_SNP [dm6]	T	C	1.873e^-4	0.907	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	15233115	2L_15233115_SNP [dm3] 2L_15233115_SNP [dm6]	A	G	1.873e^-4	0.907	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	16228576	2L_16228576_SNP [dm3] 2L_16228576_SNP [dm6]	C	T	1.874e^-4	0.907	INTERGENIC
X	21435293	X_21435293_SNP [dm3] X_21564266_SNP [dm6]	A	G	1.878e^-4	0.907	INTERGENIC
2R	11891295	2R_11891295_SNP [dm3] 2R_16003790_SNP [dm6]	G	T	1.889e^-4	0.907	SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19404444	3R_19404444_SNP [dm3] 3R_23578722_SNP [dm6]	G	T	1.889e^-4	0.907	SYNONYMOUS_CODING beat-IV
2R	10320442	2R_10320442_SNP [dm3] 2R_14432937_SNP [dm6]	T	C	1.892e^-4	0.907	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2694895	2L_2694895_SNP [dm3] 2L_2694895_SNP [dm6]	T	G	1.892e^-4	0.907	DOWNSTREAM CG15398 INTRON CG31690
X	16785917	X_16785917_SNP [dm3] X_16891884_SNP [dm6]	A	C	1.896e^-4	0.907	INTERGENIC
2L	3177374	2L_3177374_SNP [dm3] 2L_3177374_SNP [dm6]	G	A	1.900e^-4	0.907	INTRON CG34393	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	8567703	2R_8567703_SNP [dm3] 2R_12680198_SNP [dm6]	C	G	1.901e^-4	0.907	SYNONYMOUS_CODING CG8771 UPSTREAM CG42708
3L	4314053	3L_4314053_DEL [dm3] 3L_4314053_DEL [dm6]	AGAG	A	1.907e^-4	0.907		TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	10592226	2L_10592226_SNP [dm3] 2L_10592226_SNP [dm6]	A	G	1.908e^-4	0.907	INTRON Trim9
2L	15166837	2L_15166837_SNP [dm3] 2L_15166837_SNP [dm6]	G	A	1.917e^-4	0.907	SYNONYMOUS_CODING CG4168
3L	1414663	3L_1414663_SNP [dm3] 3L_1414663_SNP [dm6]	A	G	1.917e^-4	0.907	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2401516	3L_2401516_SNP [dm3] 3L_2401516_SNP [dm6]	A	G	1.917e^-4	0.907	INTRON CG45186
2L	15233111	2L_15233111_SNP [dm3] 2L_15233111_SNP [dm6]	A	C	1.927e^-4	0.907	INTRON ZnT35C	TF binding site mE1_TFBS_cad
2L	4996625	2L_4996625_SNP [dm3] 2L_4996625_SNP [dm6]	C	T	1.936e^-4	0.907	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18727989	2R_18727989_SNP [dm3] 2R_22840466_SNP [dm6]	A	G	1.937e^-4	0.907	UPSTREAM CG9826 INTERGENIC
3R	26271945	3R_26271945_SNP [dm3] 3R_30446223_SNP [dm6]	C	G	1.943e^-4	0.907	SYNONYMOUS_CODING aralar1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26781153	3R_26781153_SNP [dm3] 3R_30955431_SNP [dm6]	T	G	1.945e^-4	0.907	INTERGENIC
2L	15779226	2L_15779226_SNP [dm3] 2L_15779226_SNP [dm6]	A	C	1.956e^-4	0.907	INTERGENIC
2R	17664511	2R_17664511_SNP [dm3] 2R_21777006_SNP [dm6]	A	T	1.957e^-4	0.907	INTERGENIC
3R	26332435	3R_26332435_SNP [dm3] 3R_30506713_SNP [dm6]	G	A	1.982e^-4	0.907	SYNONYMOUS_CODING CG15539 UPSTREAM mir-4908
2R	12646988	2R_12646988_SNP [dm3] 2R_16759483_SNP [dm6]	A	G	1.986e^-4	0.907	INTRON unc-104
3L	8766317	3L_8766317_INS [dm3] 3L_8773217_INS [dm6]	T	TTT	1.997e^-4	0.907	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3L	16027261	3L_16027261_SNP [dm3] 3L_16034161_SNP [dm6]	A	T	2.000e^-4	0.907	UTR_3_PRIME CG42716 UPSTREAM CG42717 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9298055	2L_9298055_SNP [dm3] 2L_9298055_SNP [dm6]	C	T	2.001e^-4	0.907	UTR_3_PRIME Ggamma30A
3R	25953471	3R_25953471_SNP [dm3] 3R_30127749_SNP [dm6]	G	T	2.008e^-4	0.907	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
2L	9088115	2L_9088115_SNP [dm3] 2L_9088115_SNP [dm6]	G	A	2.012e^-4	0.907	NON_SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26398631	3R_26398631_SNP [dm3] 3R_30572909_SNP [dm6]	A	G	2.013e^-4	0.907	INTRON tmod
2L	16225292	2L_16225292_SNP [dm3] 2L_16225292_SNP [dm6]	G	A	2.014e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13170350	2R_13170350_SNP [dm3] 2R_17282845_SNP [dm6]	T	C	2.021e^-4	0.907	INTRON mbl
2R	4296709	2R_4296709_SNP [dm3] 2R_8409204_SNP [dm6]	A	C	2.031e^-4	0.907	INTRON CG2121	TF binding site mE1_TFBS_HSA
2R	6756164	2R_6756164_SNP [dm3] 2R_10868659_SNP [dm6]	G	C	2.032e^-4	0.907	INTRON CG30015
2L	10579967	2L_10579967_SNP [dm3] 2L_10579967_SNP [dm6]	A	C	2.032e^-4	0.907	DOWNSTREAM CG34161 INTRON Trim9 & 1 other
2L	10579159	2L_10579159_SNP [dm3] 2L_10579159_SNP [dm6]	C	G	2.033e^-4	0.907	UPSTREAM CG34160 INTRON Trim9
3R	26301345	3R_26301345_SNP [dm3] 3R_30475623_SNP [dm6]	G	A	2.046e^-4	0.907	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	5781443	3R_5781443_SNP [dm3] 3R_9955721_SNP [dm6]	C	T	2.055e^-4	0.907	UTR_3_PRIME Glut4EF INTRON Glut4EF
2L	18393461	2L_18393461_SNP [dm3] 2L_18393461_SNP [dm6]	T	C	2.055e^-4	0.907	DOWNSTREAM Fas3 INTERGENIC
3R	8383760	3R_8383760_SNP [dm3] 3R_12558038_SNP [dm6]	C	A	2.065e^-4	0.907	INTRON Octbeta2R
3R	23883088	3R_23883088_SNP [dm3] 3R_28057366_SNP [dm6]	A	G	2.079e^-4	0.907	INTRON CG34362
2L	15237221	2L_15237221_SNP [dm3] 2L_15237221_SNP [dm6]	C	T	2.081e^-4	0.907	INTRON ZnT35C
3R	8388773	3R_8388773_SNP [dm3] 3R_12563051_SNP [dm6]	G	A	2.083e^-4	0.907	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
2L	17892904	2L_17892904_SNP [dm3] 2L_17892904_SNP [dm6]	G	A	2.089e^-4	0.907	UPSTREAM CR43420 INTERGENIC
2R	17659538	2R_17659538_SNP [dm3] 2R_21772033_SNP [dm6]	A	G	2.090e^-4	0.907	INTERGENIC
3R	21833714	3R_21833714_SNP [dm3] 3R_26007992_SNP [dm6]	A	G	2.099e^-4	0.907	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14786845	2L_14786845_SNP [dm3] 2L_14786845_SNP [dm6]	G	C	2.107e^-4	0.907	INTERGENIC
2R	9278953	2R_9278953_SNP [dm3] 2R_13391448_SNP [dm6]	G	T	2.110e^-4	0.907	SYNONYMOUS_CODING CG43691
2L	1136493	2L_1136493_SNP [dm3] 2L_1136493_SNP [dm6]	T	A	2.116e^-4	0.907	INTRON CG4577
3R	17696346	3R_17696346_SNP [dm3] 3R_21870624_SNP [dm6]	C	T	2.121e^-4	0.907	UPSTREAM CG31431 INTERGENIC
3R	21356672	3R_21356672_SNP [dm3] 3R_25530950_SNP [dm6]	A	T	2.123e^-4	0.907	INTRON msi
2R	15230225	2R_15230225_SNP [dm3] 2R_19342720_SNP [dm6]	C	T	2.142e^-4	0.907	SYNONYMOUS_CODING CG9975 INTRON Rgk1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4028722	3L_4028722_SNP [dm3] 3L_4028722_SNP [dm6]	T	A	2.143e^-4	0.907	NON_SYNONYMOUS_CODING Gr64b SPLICE_SITE_REGION Gr64b & 1 other UTR_5_PRIME Gr64c DOWNSTREAM Gr64a	TF binding site mE1_TFBS_inv
2L	15428081	2L_15428081_SNP [dm3] 2L_15428081_SNP [dm6]	G	A	2.144e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	27189997	3R_27189997_SNP [dm3] 3R_31364275_SNP [dm6]	C	A	2.148e^-4	0.907	INTRON CG34347
3L	22386471	3L_22386471_SNP [dm3] 3L_22393371_SNP [dm6]	C	T	2.151e^-4	0.907	INTRON Ten-m
2L	7090717	2L_7090717_SNP [dm3] 2L_7090717_SNP [dm6]	C	T	2.153e^-4	0.907	INTERGENIC
3L	17688489	3L_17688489_SNP [dm3] 3L_17695389_SNP [dm6]	T	G	2.154e^-4	0.907	INTRON Ccn
3L	15509648	3L_15509648_SNP [dm3] 3L_15516548_SNP [dm6]	T	G	2.155e^-4	0.907	UTR_3_PRIME CG13454 DOWNSTREAM mex1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26781138	3R_26781138_SNP [dm3] 3R_30955416_SNP [dm6]	T	C	2.155e^-4	0.907	INTERGENIC
2L	13448719	2L_13448719_SNP [dm3] 2L_13448719_SNP [dm6]	T	G	2.156e^-4	0.907	NON_SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna
2R	15832107	2R_15832107_SNP [dm3] 2R_19944602_SNP [dm6]	T	A	2.166e^-4	0.907	SYNONYMOUS_CODING CG43195 DOWNSTREAM CG42690
2R	12638620	2R_12638620_SNP [dm3] 2R_16751115_SNP [dm6]	T	C	2.175e^-4	0.907	SYNONYMOUS_CODING Acp53C14c UPSTREAM Acp53Ea DOWNSTREAM unc-104
3R	8388781	3R_8388781_SNP [dm3] 3R_12563059_SNP [dm6]	A	G	2.175e^-4	0.907	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
X	20611681	X_20611681_SNP [dm3] X_20740654_SNP [dm6]	C	T	2.176e^-4	0.907	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	9552272	2L_9552272_SNP [dm3] 2L_9552272_SNP [dm6]	A	G	2.185e^-4	0.907	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8329830	3L_8329830_SNP [dm3] 3L_8336730_SNP [dm6]	A	C	2.192e^-4	0.907	UTR_5_PRIME Cpr66Cb
3L	4314082	3L_4314082_SNP [dm3] 3L_4314082_SNP [dm6]	G	A	2.195e^-4	0.907	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14976461	3L_14976461_SNP [dm3] 3L_14983361_SNP [dm6]	T	C	2.196e^-4	0.907	SYNONYMOUS_CODING CG5114 DOWNSTREAM CG3349	TF binding site mE1_TFBS_sens
2L	954274	2L_954274_SNP [dm3] 2L_954274_SNP [dm6]	A	C	2.204e^-4	0.907	INTRON CG4341
2L	9587170	2L_9587170_SNP [dm3] 2L_9587170_SNP [dm6]	G	A	2.205e^-4	0.907	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	18004448	2R_18004448_SNP [dm3] 2R_22116943_SNP [dm6]	T	A	2.208e^-4	0.907	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
X	6430923	X_6430923_SNP [dm3] X_6536890_SNP [dm6]	A	T	2.210e^-4	0.907	SYNONYMOUS_CODING dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	11177051	2R_11177051_SNP [dm3] 2R_15289546_SNP [dm6]	T	C	2.212e^-4	0.907	INTRON Trpm
3L	9635070	3L_9635070_SNP [dm3] 3L_9641970_SNP [dm6]	T	A	2.220e^-4	0.907	DOWNSTREAM CG18180 INTRON fry
2R	12834812	2R_12834812_SNP [dm3] 2R_16947307_SNP [dm6]	T	G	2.237e^-4	0.907	NON_SYNONYMOUS_CODING CG34190 DOWNSTREAM Vha16-4 & 2 others
3L	13894493	3L_13894493_SNP [dm3] 3L_13901393_SNP [dm6]	T	G	2.251e^-4	0.907	INTRON dysc
X	14251642	X_14251642_SNP [dm3] X_14357609_SNP [dm6]	C	G	2.257e^-4	0.907	INTRON dpr8
2R	18120042	2R_18120042_SNP [dm3] 2R_22232537_SNP [dm6]	T	C	2.263e^-4	0.907	INTERGENIC
3R	25274985	3R_25274985_SNP [dm3] 3R_29449263_SNP [dm6]	A	G	2.271e^-4	0.907	INTRON Ptp99A
2L	1340475	2L_1340475_SNP [dm3] 2L_1340475_SNP [dm6]	C	T	2.279e^-4	0.907	DOWNSTREAM CG33923 INTERGENIC
3R	1690788	3R_1690788_SNP [dm3] 3R_5865066_SNP [dm6]	G	A	2.283e^-4	0.907	UTR_3_PRIME CG34113	TF binding site mE1_TFBS_cad
2L	3857778	2L_3857778_INS [dm3] 2L_3857778_INS [dm6]	A	AA	2.288e^-4	0.907	UPSTREAM CR45450 INTERGENIC
2L	16776836	2L_16776836_SNP [dm3] 2L_16776836_SNP [dm6]	T	C	2.295e^-4	0.907	INTRON Mhc
2L	18394324	2L_18394324_SNP [dm3] 2L_18394324_SNP [dm6]	C	T	2.296e^-4	0.907	DOWNSTREAM Fas3 INTERGENIC
3R	5737849	3R_5737849_SNP [dm3] 3R_9912127_SNP [dm6]	T	G	2.299e^-4	0.907	INTRON Glut4EF
X	21441711	X_21441711_SNP [dm3] X_21570684_SNP [dm6]	A	T	2.304e^-4	0.907	INTERGENIC
X	13572682	X_13572682_SNP [dm3] X_13678649_SNP [dm6]	C	T	2.317e^-4	0.907	SYNONYMOUS_CODING CG12177 DOWNSTREAM CG11162
2L	15212766	2L_15212766_SNP [dm3] 2L_15212766_SNP [dm6]	C	G	2.318e^-4	0.907	INTERGENIC
3R	14175968	3R_14175968_SNP [dm3] 3R_18350246_SNP [dm6]	C	A	2.319e^-4	0.907	INTRON CG15803
3L	16647314	3L_16647314_SNP [dm3] 3L_16654214_SNP [dm6]	T	A	2.319e^-4	0.907	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
X	12991368	X_12991368_SNP [dm3] X_13097335_SNP [dm6]	G	C	2.332e^-4	0.907	SYNONYMOUS_CODING CG43313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	15779184	2L_15779184_SNP [dm3] 2L_15779184_SNP [dm6]	C	T	2.336e^-4	0.907	INTERGENIC
3L	9558954	3L_9558954_SNP [dm3] 3L_9565854_SNP [dm6]	C	T	2.347e^-4	0.907	INTRON CG42673
2L	11483257	2L_11483257_SNP [dm3] 2L_11483257_SNP [dm6]	G	A	2.354e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14937652	2L_14937652_SNP [dm3] 2L_14937652_SNP [dm6]	C	T	2.358e^-4	0.907	INTRON CG42313
3R	17978728	3R_17978728_SNP [dm3] 3R_22153006_SNP [dm6]	T	G	2.361e^-4	0.907	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
2L	4674747	2L_4674747_SNP [dm3] 2L_4674747_SNP [dm6]	T	C	2.368e^-4	0.907	INTERGENIC
3R	17744037	3R_17744037_SNP [dm3] 3R_21918315_SNP [dm6]	T	C	2.370e^-4	0.907	INTERGENIC
3R	14718664	3R_14718664_SNP [dm3] 3R_18892942_SNP [dm6]	A	G	2.373e^-4	0.907	INTERGENIC
3L	16647244	3L_16647244_SNP [dm3] 3L_16654144_SNP [dm6]	G	A	2.395e^-4	0.907	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3R	11307826	3R_11307826_SNP [dm3] 3R_15482104_SNP [dm6]	C	T	2.400e^-4	0.907	NON_SYNONYMOUS_CODING CG14870	TF binding site mE1_TFBS_chinmo
2R	17660816	2R_17660816_SNP [dm3] 2R_21773311_SNP [dm6]	G	T	2.403e^-4	0.907	START_GAINED CG4021 UTR_5_PRIME CG4021
X	20430901	X_20430901_SNP [dm3] X_20559874_SNP [dm6]	C	T	2.405e^-4	0.907	INTRON RunxB	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17136015	2R_17136015_SNP [dm3] 2R_21248510_SNP [dm6]	A	T	2.409e^-4	0.907	INTRON ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19603972	3R_19603972_INS [dm3] 3R_23778250_INS [dm6]	A	ATGAGAGCA	2.409e^-4	0.907	INTRON Nup98-96
2L	17364278	2L_17364278_INS [dm3] 2L_17364278_INS [dm6]	CCGT	AGAATGATA	2.411e^-4	0.907	UTR_3_PRIME CG31804
2R	12459195	2R_12459195_SNP [dm3] 2R_16571690_SNP [dm6]	T	A	2.416e^-4	0.907	UPSTREAM CG4927 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	4906688	2L_4906688_SNP [dm3] 2L_4906688_SNP [dm6]	A	T	2.416e^-4	0.907	UTR_5_PRIME CG2837 INTRON CG2837
2R	10768274	2R_10768274_SNP [dm3] 2R_14880769_SNP [dm6]	G	T	2.417e^-4	0.907	SYNONYMOUS_CODING Cyp6a9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14931102	2L_14931102_SNP [dm3] 2L_14931102_SNP [dm6]	A	G	2.417e^-4	0.907	DOWNSTREAM CG3491 INTRON CG42313
2R	12783918	2R_12783918_SNP [dm3] 2R_16896413_SNP [dm6]	T	C	2.417e^-4	0.907	UPSTREAM CG8910 INTERGENIC
X	20644953	X_20644953_SNP [dm3] X_20773926_SNP [dm6]	C	A	2.423e^-4	0.907	INTRON shakB
X	5691255	X_5691255_SNP [dm3] X_5797222_SNP [dm6]	C	T	2.427e^-4	0.907	INTERGENIC
2R	6408841	2R_6408841_SNP [dm3] 2R_10521336_SNP [dm6]	A	G	2.429e^-4	0.907	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7068047	2R_7068047_SNP [dm3] 2R_11180542_SNP [dm6]	T	A	2.434e^-4	0.907	INTRON shn
3L	11341758	3L_11341758_SNP [dm3] 3L_11348658_SNP [dm6]	T	A	2.436e^-4	0.907	DOWNSTREAM CR45251 INTERGENIC
2L	667600	2L_667600_SNP [dm3] 2L_667600_SNP [dm6]	G	T	2.439e^-4	0.907	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7201479	2R_7201479_SNP [dm3] 2R_11313974_SNP [dm6]	T	C	2.446e^-4	0.907	SPLICE_SITE_REGION nompA SYNONYMOUS_CODING nompA INTRON nompA	TF binding site mE1_TFBS_cad
2L	19963585	2L_19963585_SNP [dm3] 2L_19963585_SNP [dm6]	G	A	2.447e^-4	0.907	NON_SYNONYMOUS_CODING CG16772 UPSTREAM CG10680 DOWNSTREAM CR45701
2L	14698503	2L_14698503_SNP [dm3] 2L_14698503_SNP [dm6]	T	C	2.449e^-4	0.907	INTERGENIC
3R	26105459	3R_26105459_SNP [dm3] 3R_30279737_SNP [dm6]	G	C	2.451e^-4	0.907	NON_SYNONYMOUS_CODING hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2577636	3L_2577636_SNP [dm3] 3L_2577636_SNP [dm6]	T	C	2.463e^-4	0.907	INTRON msn	regulatory region REDfly_CRMs
2R	13171231	2R_13171231_SNP [dm3] 2R_17283726_SNP [dm6]	G	A	2.463e^-4	0.907	INTRON mbl
3L	16647266	3L_16647266_SNP [dm3] 3L_16654166_SNP [dm6]	C	A	2.465e^-4	0.907	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	2694894	2L_2694894_SNP [dm3] 2L_2694894_SNP [dm6]	T	G	2.471e^-4	0.907	DOWNSTREAM CG15398 INTRON CG31690
2L	20783488	2L_20783488_SNP [dm3] 2L_20783488_SNP [dm6]	A	T	2.476e^-4	0.907	DOWNSTREAM cad INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8196164	3L_8196164_SNP [dm3] 3L_8203064_SNP [dm6]	T	C	2.479e^-4	0.907	SYNONYMOUS_CODING CG13679 UPSTREAM CG7366
2R	12640961	2R_12640961_SNP [dm3] 2R_16753456_SNP [dm6]	A	G	2.482e^-4	0.907	SYNONYMOUS_CODING unc-104 UPSTREAM CG34189
2R	11058111	2R_11058111_SNP [dm3] 2R_15170606_SNP [dm6]	T	C	2.486e^-4	0.907	INTRON igl	TF binding site mE1_TFBS_sbb
2L	18288961	2L_18288961_SNP [dm3] 2L_18288961_SNP [dm6]	G	A	2.490e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	635579	2L_635579_SNP [dm3] 2L_635579_SNP [dm6]	A	T	2.494e^-4	0.907	INTERGENIC
3R	26781282	3R_26781282_SNP [dm3] 3R_30955560_SNP [dm6]	A	C	2.494e^-4	0.907	INTERGENIC
2L	18302591	2L_18302591_SNP [dm3] 2L_18302591_SNP [dm6]	A	G	2.496e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	5879176	2L_5879176_SNP [dm3] 2L_5879176_SNP [dm6]	T	C	2.496e^-4	0.907	UTR_5_PRIME rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8140431	X_8140431_SNP [dm3] X_8246398_SNP [dm6]	C	T	2.509e^-4	0.907	SYNONYMOUS_CODING Trxr-1	TF binding site mE1_TFBS_chinmo
X	9023539	X_9023539_SNP [dm3] X_9129506_SNP [dm6]	C	A	2.512e^-4	0.907	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12643087	2R_12643087_SNP [dm3] 2R_16755582_SNP [dm6]	T	C	2.516e^-4	0.907	SYNONYMOUS_CODING CG5267 DOWNSTREAM CG34189 INTRON unc-104	TF binding site mE1_TFBS_chinmo
2L	7253800	2L_7253800_SNP [dm3] 2L_7253800_SNP [dm6]	A	C	2.518e^-4	0.907	UPSTREAM CG13786 INTERGENIC
3L	2459523	3L_2459523_SNP [dm3] 3L_2459523_SNP [dm6]	C	T	2.519e^-4	0.907	INTRON CG45186
2R	12640971	2R_12640971_SNP [dm3] 2R_16753466_SNP [dm6]	G	A	2.521e^-4	0.907	NON_SYNONYMOUS_CODING unc-104 UPSTREAM CG34189
2R	9165119	2R_9165119_SNP [dm3] 2R_13277614_SNP [dm6]	T	G	2.522e^-4	0.907	INTRON Dh31-R
2R	10294910	2R_10294910_SNP [dm3] 2R_14407405_SNP [dm6]	T	G	2.524e^-4	0.907	INTERGENIC
2L	953617	2L_953617_SNP [dm3] 2L_953617_SNP [dm6]	G	A	2.525e^-4	0.907	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	761879	3L_761879_SNP [dm3] 3L_761879_SNP [dm6]	C	T	2.534e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sbb
2L	17364333	2L_17364333_SNP [dm3] 2L_17364333_SNP [dm6]	T	A	2.545e^-4	0.907	UTR_3_PRIME CG31804
2L	9396551	2L_9396551_SNP [dm3] 2L_9396551_SNP [dm6]	G	A	2.551e^-4	0.907	DOWNSTREAM CG4438 INTRON Shawl
2R	17661418	2R_17661418_SNP [dm3] 2R_21773913_SNP [dm6]	C	T	2.552e^-4	0.907	SYNONYMOUS_CODING CG4021
2L	7250033	2L_7250033_SNP [dm3] 2L_7250033_SNP [dm6]	G	T	2.557e^-4	0.907	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	18378424	2L_18378424_SNP [dm3] 2L_18378424_SNP [dm6]	A	T	2.558e^-4	0.907	UPSTREAM CG34171 INTRON Fas3
2L	1917355	2L_1917355_SNP [dm3] 2L_1917355_SNP [dm6]	A	G	2.562e^-4	0.907	INTRON CG7337
2R	14980304	2R_14980304_SNP [dm3] 2R_19092799_SNP [dm6]	C	T	2.580e^-4	0.907	INTRON 5-HT1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14678624	2R_14678624_SNP [dm3] 2R_18791119_SNP [dm6]	C	T	2.582e^-4	0.907	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20611643	X_20611643_SNP [dm3] X_20740616_SNP [dm6]	C	A	2.584e^-4	0.907	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	21277140	X_21277140_SNP [dm3] X_21406113_SNP [dm6]	A	G	2.586e^-4	0.907	INTERGENIC
3L	4614069	3L_4614069_SNP [dm3] 3L_4614069_SNP [dm6]	T	A	2.589e^-4	0.907	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	11846472	X_11846472_SNP [dm3] X_11952439_SNP [dm6]	G	A	2.600e^-4	0.907	INTRON cac
3L	11341756	3L_11341756_SNP [dm3] 3L_11348656_SNP [dm6]	G	T	2.605e^-4	0.907	DOWNSTREAM CR45251 INTERGENIC
2L	18525524	2L_18525524_SNP [dm3] 2L_18525524_SNP [dm6]	G	A	2.614e^-4	0.907	INTRON CG10211
3L	6005059	3L_6005059_SNP [dm3] 3L_6011959_SNP [dm6]	T	C	2.620e^-4	0.907	UPSTREAM alphaKap4 INTRON PVRAP	insulator Insulator_Class_II.mE01
2L	806011	2L_806011_SNP [dm3] 2L_806011_SNP [dm6]	A	G	2.631e^-4	0.907	INTERGENIC
2L	18337198	2L_18337198_SNP [dm3] 2L_18337198_SNP [dm6]	T	C	2.632e^-4	0.907	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	22805834	3R_22805834_SNP [dm3] 3R_26980112_SNP [dm6]	C	A	2.656e^-4	0.907	UPSTREAM CG14253 INTRON CG14253	TF binding site mE1_TFBS_Trl
3R	21833645	3R_21833645_SNP [dm3] 3R_26007923_SNP [dm6]	C	A	2.661e^-4	0.907	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3176888	2L_3176888_SNP [dm3] 2L_3176888_SNP [dm6]	G	A	2.663e^-4	0.907	INTRON CG34393	TF binding site BDTNP1_TFBS_da
X	10979548	X_10979548_DEL [dm3] X_11085515_DEL [dm6]	CGCAAGTTCAGCAAAA...	C	2.665e^-4	0.907	INTRON sev
2L	15237219	2L_15237219_SNP [dm3] 2L_15237219_SNP [dm6]	C	A	2.665e^-4	0.907	INTRON ZnT35C
3L	11341793	3L_11341793_SNP [dm3] 3L_11348693_SNP [dm6]	A	G	2.666e^-4	0.907	DOWNSTREAM CR45251 INTERGENIC
2L	11872191	2L_11872191_DEL [dm3] 2L_11872191_DEL [dm6]	TTTTCTAAAGATAAAATAC...	T	2.681e^-4	0.907	INTRON Pde1c
3L	17235864	3L_17235864_SNP [dm3] 3L_17242764_SNP [dm6]	G	T	2.684e^-4	0.907	UPSTREAM CG6512 & 1 other INTERGENIC	transposable element FlyBase
3R	12642471	3R_12642471_SNP [dm3] 3R_16816749_SNP [dm6]	C	G	2.691e^-4	0.907	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3022618	3L_3022618_SNP [dm3] 3L_3022618_SNP [dm6]	C	G	2.699e^-4	0.907	INTERGENIC
3L	899773	3L_899773_SNP [dm3] 3L_899773_SNP [dm6]	C	G	2.701e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13680542	X_13680542_SNP [dm3] X_13786509_SNP [dm6]	C	T	2.707e^-4	0.907	INTRON inaE	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	11872213	2L_11872213_SNP [dm3] 2L_11872213_SNP [dm6]	T	A	2.709e^-4	0.907	INTRON Pde1c
2L	11872218	2L_11872218_DEL [dm3] 2L_11872218_DEL [dm6]	TTTATAGAACTT...	T	2.709e^-4	0.907	INTRON Pde1c
X	8800599	X_8800599_SNP [dm3] X_8906566_SNP [dm6]	A	G	2.711e^-4	0.907	UPSTREAM e_r_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18394501	2L_18394501_SNP [dm3] 2L_18394501_SNP [dm6]	C	T	2.717e^-4	0.907	INTERGENIC
2R	15950935	2R_15950935_SNP [dm3] 2R_20063430_SNP [dm6]	A	G	2.726e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	20611773	X_20611773_SNP [dm3] X_20740746_SNP [dm6]	A	G	2.726e^-4	0.907	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	26781141	3R_26781141_SNP [dm3] 3R_30955419_SNP [dm6]	A	C	2.751e^-4	0.907	INTERGENIC
X	20611659	X_20611659_SNP [dm3] X_20740632_SNP [dm6]	T	A	2.760e^-4	0.907	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	15506804	3L_15506804_SNP [dm3] 3L_15513704_SNP [dm6]	C	T	2.763e^-4	0.907	DOWNSTREAM Eip71CD INTERGENIC	regulatory region REDfly_CRMs
2L	3706529	2L_3706529_SNP [dm3] 2L_3706529_SNP [dm6]	T	C	2.764e^-4	0.907	DOWNSTREAM CG31777 & 1 other INTERGENIC
2L	10656503	2L_10656503_SNP [dm3] 2L_10656503_SNP [dm6]	G	C	2.768e^-4	0.907	INTERGENIC
2L	16345935	2L_16345935_SNP [dm3] 2L_16345935_SNP [dm6]	G	T	2.775e^-4	0.907	SYNONYMOUS_CODING chif INTRON CG42231	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11758662	2R_11758662_SNP [dm3] 2R_15871157_SNP [dm6]	T	A	2.783e^-4	0.907	UTR_3_PRIME sli	TF binding site mE1_TFBS_cad
3L	15510453	3L_15510453_SNP [dm3] 3L_15517353_SNP [dm6]	C	A	2.795e^-4	0.907	UPSTREAM CG13454 DOWNSTREAM mex1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21833710	3R_21833710_SNP [dm3] 3R_26007988_SNP [dm6]	G	A	2.798e^-4	0.907	UPSTREAM CR45039 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14003700	2R_14003700_SNP [dm3] 2R_18116195_SNP [dm6]	C	A	2.800e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10309575	2R_10309575_SNP [dm3] 2R_14422070_SNP [dm6]	G	A	2.808e^-4	0.907	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12646998	2R_12646998_SNP [dm3] 2R_16759493_SNP [dm6]	G	A	2.809e^-4	0.907	INTRON unc-104
3L	12718319	3L_12718319_SNP [dm3] 3L_12725219_SNP [dm6]	T	G	2.813e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18375755	2L_18375755_SNP [dm3] 2L_18375755_SNP [dm6]	G	A	2.814e^-4	0.907	INTRON Fas3
X	13514778	X_13514778_SNP [dm3] X_13620745_SNP [dm6]	G	A	2.814e^-4	0.907	SYNONYMOUS_CODING CG2691
3L	7824646	3L_7824646_SNP [dm3] 3L_7831546_SNP [dm6]	G	A	2.824e^-4	0.907	SYNONYMOUS_CODING Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_chinmo
3L	16647335	3L_16647335_SNP [dm3] 3L_16654235_SNP [dm6]	A	C	2.828e^-4	0.907	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3L	7388002	3L_7388002_SNP [dm3] 3L_7394902_SNP [dm6]	T	C	2.844e^-4	0.907	INTRON CG8563
2L	11872189	2L_11872189_SNP [dm3] 2L_11872189_SNP [dm6]	G	A	2.853e^-4	0.907	INTRON Pde1c
2L	1340458	2L_1340458_INS [dm3] 2L_1340458_INS [dm6]	T	TCCTTT	2.859e^-4	0.907	DOWNSTREAM CG33923 INTERGENIC
3R	15920174	3R_15920174_SNP [dm3] 3R_20094452_SNP [dm6]	G	A	2.868e^-4	0.907	INTERGENIC
2L	3372489	2L_3372489_SNP [dm3] 2L_3372489_SNP [dm6]	C	T	2.870e^-4	0.907	INTRON CG34394	TF binding site mE1_TFBS_D
X	18423805	X_18423805_SNP [dm3] X_18529772_SNP [dm6]	C	T	2.872e^-4	0.907	DOWNSTREAM CG15047 INTRON Bx
2L	18380412	2L_18380412_SNP [dm3] 2L_18380412_SNP [dm6]	G	T	2.878e^-4	0.907	DOWNSTREAM CG34171 INTRON Fas3
3L	1120728	3L_1120728_SNP [dm3] 3L_1120728_SNP [dm6]	A	T	2.882e^-4	0.907	INTERGENIC
2R	9134343	2R_9134343_SNP [dm3] 2R_13246838_SNP [dm6]	A	C	2.899e^-4	0.907	INTRON Mp20	TF binding site mE1_TFBS_cad
3L	14045803	3L_14045803_SNP [dm3] 3L_14052703_SNP [dm6]	C	A	2.900e^-4	0.907	NON_SYNONYMOUS_CODING CG13484 UPSTREAM CG43986 & 1 other DOWNSTREAM CG6833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	8766320	3L_8766320_SNP [dm3] 3L_8773220_SNP [dm6]	G	T	2.902e^-4	0.907	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
2L	9642403	2L_9642403_SNP [dm3] 2L_9642403_SNP [dm6]	T	C	2.906e^-4	0.907	SYNONYMOUS_CODING Apoltp
3R	16306691	3R_16306691_SNP [dm3] 3R_20480969_SNP [dm6]	T	C	2.906e^-4	0.907	UTR_5_PRIME Gfrl INTRON Gfrl
3L	8316882	3L_8316882_SNP [dm3] 3L_8323782_SNP [dm6]	C	A	2.906e^-4	0.907	INTERGENIC
X	4333140	X_4333140_SNP [dm3] X_4439107_SNP [dm6]	G	C	2.909e^-4	0.907	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
3R	14536772	3R_14536772_INS [dm3] 3R_18711050_INS [dm6]	A	AA	2.913e^-4	0.907	INTRON VAChT & 1 other
2L	13123883	2L_13123883_SNP [dm3] 2L_13123883_SNP [dm6]	C	A	2.914e^-4	0.907	INTERGENIC
X	6484170	X_6484170_SNP [dm3] X_6590137_SNP [dm6]	T	C	2.916e^-4	0.907	SYNONYMOUS_CODING CG17717 UPSTREAM Pat1 DOWNSTREAM CG34417	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3776302	3R_3776302_SNP [dm3] 3R_7950580_SNP [dm6]	G	C	2.921e^-4	0.907	INTRON dsx
3R	9578828	3R_9578828_SNP [dm3] 3R_13753106_SNP [dm6]	A	G	2.922e^-4	0.907	SYNONYMOUS_CODING CG34383 INTRON CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11341765	3L_11341765_SNP [dm3] 3L_11348665_SNP [dm6]	A	T	2.927e^-4	0.907	DOWNSTREAM CR45251 INTERGENIC
2R	7958162	2R_7958162_SNP [dm3] 2R_12070657_SNP [dm6]	C	T	2.933e^-4	0.907	INTRON CG8888
3L	8766323	3L_8766323_SNP [dm3] 3L_8773223_SNP [dm6]	A	G	2.933e^-4	0.907	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
2L	18337234	2L_18337234_SNP [dm3] 2L_18337234_SNP [dm6]	T	G	2.940e^-4	0.907	INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	953608	2L_953608_INS [dm3] 2L_953608_INS [dm6]	T	TG	2.940e^-4	0.907	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7470345	2L_7470345_SNP [dm3] 2L_7470345_SNP [dm6]	T	G	2.941e^-4	0.907	UPSTREAM CG6055 INTRON CG6055
X	16785560	X_16785560_SNP [dm3] X_16891527_SNP [dm6]	A	C	2.957e^-4	0.907	DOWNSTREAM CG13002 INTERGENIC
3R	2409760	3R_2409760_SNP [dm3] 3R_6584038_SNP [dm6]	C	T	2.958e^-4	0.907	INTRON dpr11
X	16785567	X_16785567_SNP [dm3] X_16891534_SNP [dm6]	A	G	2.963e^-4	0.907	DOWNSTREAM CG13002 INTERGENIC
2L	12925932	2L_12925932_SNP [dm3] 2L_12925932_SNP [dm6]	G	A	2.963e^-4	0.907	DOWNSTREAM ACXA INTRON ACXE
X	20797431	X_20797431_DEL [dm3] X_20926404_DEL [dm6]	AA	A	2.967e^-4	0.907	INTRON shakB	TF binding site BDTNP1_TFBS_dl
X	14405273	X_14405273_SNP [dm3] X_14511240_SNP [dm6]	T	A	2.981e^-4	0.907	INTERGENIC
3L	10600474	3L_10600474_SNP [dm3] 3L_10607374_SNP [dm6]	C	A	2.985e^-4	0.907	INTERGENIC
2R	11661872	2R_11661872_SNP [dm3] 2R_15774367_SNP [dm6]	C	T	3.003e^-4	0.907	INTRON Zasp52	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9556631	2L_9556631_SNP [dm3] 2L_9556631_SNP [dm6]	G	A	3.011e^-4	0.907	INTRON jp
2L	18383140	2L_18383140_SNP [dm3] 2L_18383140_SNP [dm6]	T	C	3.014e^-4	0.907	INTRON Fas3	TF binding site mE1_TFBS_cad
X	20129035	X_20129035_SNP [dm3] X_20258009_SNP [dm6]	A	G	3.015e^-4	0.907	UPSTREAM CG17065 INTERGENIC
3L	15510442	3L_15510442_SNP [dm3] 3L_15517342_SNP [dm6]	T	A	3.026e^-4	0.907	UPSTREAM CG13454 DOWNSTREAM mex1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	20611809	X_20611809_SNP [dm3] X_20740782_SNP [dm6]	A	C	3.032e^-4	0.907	DOWNSTREAM CR45059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	10830564	2R_10830564_SNP [dm3] 2R_14943059_SNP [dm6]	G	C	3.034e^-4	0.907	SYNONYMOUS_CODING CG10257
3L	17703928	3L_17703928_SNP [dm3] 3L_17710828_SNP [dm6]	G	T	3.039e^-4	0.907	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3R	26757268	3R_26757268_SNP [dm3] 3R_30931546_SNP [dm6]	T	C	3.040e^-4	0.907	DOWNSTREAM Ptx1 INTERGENIC
2L	19755719	2L_19755719_SNP [dm3] 2L_19755719_SNP [dm6]	C	T	3.046e^-4	0.907	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	14119803	2R_14119803_SNP [dm3] 2R_18232298_SNP [dm6]	C	T	3.053e^-4	0.907	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	4436953	2R_4436953_SNP [dm3] 2R_8549448_SNP [dm6]	A	G	3.057e^-4	0.907	INTERGENIC
2L	15212157	2L_15212157_SNP [dm3] 2L_15212157_SNP [dm6]	A	C	3.066e^-4	0.907	INTERGENIC
3R	9466765	3R_9466765_SNP [dm3] 3R_13641043_SNP [dm6]	A	G	3.069e^-4	0.907	UTR_3_PRIME sqd INTRON sqd
3L	13116862	3L_13116862_SNP [dm3] 3L_13123762_SNP [dm6]	C	T	3.081e^-4	0.907	INTERGENIC
2R	9573284	2R_9573284_SNP [dm3] 2R_13685779_SNP [dm6]	G	C	3.081e^-4	0.907	INTRON fas
2R	8430348	2R_8430348_SNP [dm3] 2R_12542843_SNP [dm6]	C	T	3.082e^-4	0.907	INTRON fra
X	20186050	X_20186050_INS [dm3] X_20315023_INS [dm6]	T	TC	3.083e^-4	0.907	INTRON CG1504
2R	11758619	2R_11758619_SNP [dm3] 2R_15871114_SNP [dm6]	T	C	3.086e^-4	0.907	UTR_3_PRIME sli
2L	10661699	2L_10661699_SNP [dm3] 2L_10661699_SNP [dm6]	C	T	3.086e^-4	0.907	UPSTREAM CG31871 INTERGENIC
3L	4345063	3L_4345063_SNP [dm3] 3L_4345063_SNP [dm6]	C	A	3.095e^-4	0.907	UPSTREAM CR45156 INTRON Cip4
3L	1120634	3L_1120634_SNP [dm3] 3L_1120634_SNP [dm6]	A	T	3.100e^-4	0.907	INTERGENIC
3L	16027267	3L_16027267_SNP [dm3] 3L_16034167_SNP [dm6]	G	A	3.101e^-4	0.907	UTR_3_PRIME CG42716 UPSTREAM CG42717 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	27225757	3R_27225757_SNP [dm3] 3R_31400035_SNP [dm6]	T	G	3.101e^-4	0.907	SYNONYMOUS_CODING Gcn2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16785414	X_16785414_SNP [dm3] X_16891381_SNP [dm6]	T	G	3.116e^-4	0.907	DOWNSTREAM CG13002 INTERGENIC
3L	9868542	3L_9868542_SNP [dm3] 3L_9875442_SNP [dm6]	T	C	3.124e^-4	0.907	UPSTREAM CR45406 INTERGENIC
2L	1892473	2L_1892473_SNP [dm3] 2L_1892473_SNP [dm6]	T	A	3.139e^-4	0.907	INTRON CG7337
2L	10312870	2L_10312870_SNP [dm3] 2L_10312870_SNP [dm6]	T	C	3.143e^-4	0.907	SYNONYMOUS_CODING CG5384 UPSTREAM CG5385	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18615859	2L_18615859_SNP [dm3] 2L_18615859_SNP [dm6]	A	C	3.145e^-4	0.907	UTR_5_PRIME CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8060390	3R_8060390_SNP [dm3] 3R_12234668_SNP [dm6]	A	T	3.152e^-4	0.907	UTR_5_PRIME Cyp313a5 DOWNSTREAM Cyp313a2
2R	13169731	2R_13169731_SNP [dm3] 2R_17282226_SNP [dm6]	T	A	3.152e^-4	0.907	INTRON mbl
2R	13169733	2R_13169733_SNP [dm3] 2R_17282228_SNP [dm6]	G	A	3.152e^-4	0.907	INTRON mbl
2L	19757244	2L_19757244_SNP [dm3] 2L_19757244_SNP [dm6]	T	C	3.157e^-4	0.907	UPSTREAM CG10631 DOWNSTREAM CG10628 INTERGENIC
3L	2401775	3L_2401775_SNP [dm3] 3L_2401775_SNP [dm6]	A	C	3.159e^-4	0.907	INTRON CG45186
3L	20672325	3L_20672325_SNP [dm3] 3L_20679225_SNP [dm6]	G	A	3.166e^-4	0.907	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9866302	3L_9866302_DEL [dm3] 3L_9873202_DEL [dm6]	TCATAT	T	3.186e^-4	0.907	INTERGENIC
2R	14119851	2R_14119851_DEL [dm3] 2R_18232346_DEL [dm6]	ATATGGGAGTTAGCTTTGTA...	A	3.209e^-4	0.907	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5410201	2L_5410201_SNP [dm3] 2L_5410201_SNP [dm6]	A	T	3.210e^-4	0.907	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21590097	3L_21590097_SNP [dm3] 3L_21596997_SNP [dm6]	T	C	3.213e^-4	0.907	INTRON TfAP-2	TF binding site mE1_TFBS_cad
2R	19112370	2R_19112370_SNP [dm3] 2R_23224847_SNP [dm6]	G	A	3.222e^-4	0.907	INTERGENIC
3L	16754756	3L_16754756_SNP [dm3] 3L_16761656_SNP [dm6]	C	A	3.229e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	15830354	2R_15830354_DEL [dm3] 2R_19942849_DEL [dm6]	CAATTCACGCTGTTTG...	C	3.229e^-4	0.907	INTERGENIC
3R	26395619	3R_26395619_SNP [dm3] 3R_30569897_SNP [dm6]	C	T	3.233e^-4	0.907	INTRON tmod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16754788	3L_16754788_SNP [dm3] 3L_16761688_SNP [dm6]	T	C	3.234e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	9036476	2L_9036476_SNP [dm3] 2L_9036476_SNP [dm6]	G	A	3.235e^-4	0.907	INTERGENIC
2L	346747	2L_346747_SNP [dm3] 2L_346747_SNP [dm6]	C	T	3.244e^-4	0.907	UTR_3_PRIME Plc21C DOWNSTREAM Plc21C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10655129	3L_10655129_SNP [dm3] 3L_10662029_SNP [dm6]	C	T	3.264e^-4	0.907	SYNONYMOUS_CODING CG8003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25536663	3R_25536663_SNP [dm3] 3R_29710941_SNP [dm6]	T	A	3.270e^-4	0.907	INTERGENIC
2R	16136053	2R_16136053_SNP [dm3] 2R_20248548_SNP [dm6]	G	A	3.272e^-4	0.907	SYNONYMOUS_CODING CG9864 UPSTREAM ppk6	TF binding site mE1_TFBS_cad
3R	19388363	3R_19388363_SNP [dm3] 3R_23562641_SNP [dm6]	A	T	3.276e^-4	0.907	INTRON beat-IV
3R	27189989	3R_27189989_SNP [dm3] 3R_31364267_SNP [dm6]	G	C	3.295e^-4	0.907	INTRON CG34347
2L	9944060	2L_9944060_INS [dm3] 2L_9944060_INS [dm6]	T	TAT	3.295e^-4	0.907	INTRON CG5853
2L	953631	2L_953631_INS [dm3] 2L_953631_INS [dm6]	C	CAGGTGGCTTTAAAGCGGTC...	3.298e^-4	0.907	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15838769	2R_15838769_SNP [dm3] 2R_19951264_SNP [dm6]	T	C	3.310e^-4	0.907	UPSTREAM CG10822 INTERGENIC
2R	10830599	2R_10830599_SNP [dm3] 2R_14943094_SNP [dm6]	C	A	3.311e^-4	0.907	INTRON CG10257
2R	12019564	2R_12019564_SNP [dm3] 2R_16132059_SNP [dm6]	C	T	3.319e^-4	0.907	INTRON spin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11341767	3L_11341767_SNP [dm3] 3L_11348667_SNP [dm6]	G	T	3.320e^-4	0.907	DOWNSTREAM CR45251 INTERGENIC
3R	18302218	3R_18302218_SNP [dm3] 3R_22476496_SNP [dm6]	G	A	3.320e^-4	0.907	INTRON Nrx-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2863935	3R_2863935_SNP [dm3] 3R_7038213_SNP [dm6]	A	T	3.332e^-4	0.907	INTRON CR44933	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	2584917	X_2584917_SNP [dm3] X_2690884_SNP [dm6]	A	C	3.333e^-4	0.907	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
3L	14737476	3L_14737476_SNP [dm3] 3L_14744376_SNP [dm6]	A	G	3.334e^-4	0.907	NON_SYNONYMOUS_CODING ome
3L	15504913	3L_15504913_SNP [dm3] 3L_15511813_SNP [dm6]	A	C	3.334e^-4	0.907	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9086858	3L_9086858_SNP [dm3] 3L_9093758_SNP [dm6]	T	C	3.342e^-4	0.907	INTRON CG32032
X	2584890	X_2584890_SNP [dm3] X_2690857_SNP [dm6]	C	T	3.350e^-4	0.907	SYNONYMOUS_CODING per	TF binding site mE1_TFBS_chinmo
3R	11195082	3R_11195082_SNP [dm3] 3R_15369360_SNP [dm6]	G	A	3.354e^-4	0.907	SYNONYMOUS_CODING CG14868 DOWNSTREAM CG6136	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15296387	2L_15296387_SNP [dm3] 2L_15296387_SNP [dm6]	G	A	3.366e^-4	0.907	EXON CR43764
2R	10378828	2R_10378828_SNP [dm3] 2R_14491323_SNP [dm6]	G	C	3.371e^-4	0.907	INTRON L
2L	18316992	2L_18316992_SNP [dm3] 2L_18316992_SNP [dm6]	C	A	3.383e^-4	0.907	INTERGENIC
3L	6005082	3L_6005082_SNP [dm3] 3L_6011982_SNP [dm6]	T	C	3.386e^-4	0.907	UPSTREAM alphaKap4 INTRON PVRAP
2L	18219694	2L_18219694_SNP [dm3] 2L_18219694_SNP [dm6]	T	C	3.392e^-4	0.907	INTRON CG42750
X	981594	X_981594_SNP [dm3] X_1087561_SNP [dm6]	G	C	3.397e^-4	0.907	INTRON CR44779 & 1 other EXON CR44779
2R	10320445	2R_10320445_SNP [dm3] 2R_14432940_SNP [dm6]	T	A	3.412e^-4	0.907	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11169360	2L_11169360_SNP [dm3] 2L_11169360_SNP [dm6]	T	C	3.420e^-4	0.907	INTRON Ca-beta	TF binding site mE1_TFBS_Trl
3L	7801685	3L_7801685_SNP [dm3] 3L_7808585_SNP [dm6]	G	A	3.428e^-4	0.907	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	5435772	3L_5435772_SNP [dm3] 3L_5442672_SNP [dm6]	A	G	3.435e^-4	0.907	DOWNSTREAM CG34391 INTERGENIC
3L	13894304	3L_13894304_SNP [dm3] 3L_13901204_SNP [dm6]	G	C	3.445e^-4	0.907	INTRON dysc
2L	4449719	2L_4449719_SNP [dm3] 2L_4449719_SNP [dm6]	C	T	3.448e^-4	0.907	NON_SYNONYMOUS_CODING CG15439	TF binding site mE1_TFBS_cad
3L	17523186	3L_17523186_SNP [dm3] 3L_17530086_SNP [dm6]	G	A	3.449e^-4	0.907	UTR_5_PRIME Nedd4 UPSTREAM Edc3 EXON CR45165	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8567874	2R_8567874_SNP [dm3] 2R_12680369_SNP [dm6]	T	C	3.472e^-4	0.907	SYNONYMOUS_CODING CG8771 UPSTREAM CG42708
3L	9868368	3L_9868368_SNP [dm3] 3L_9875268_SNP [dm6]	T	A	3.473e^-4	0.907	UPSTREAM CR45406 INTERGENIC
2L	18286869	2L_18286869_SNP [dm3] 2L_18286869_SNP [dm6]	T	A	3.478e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	4313819	3L_4313819_SNP [dm3] 3L_4313819_SNP [dm6]	C	T	3.488e^-4	0.907	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24007593	3R_24007593_SNP [dm3] 3R_28181871_SNP [dm6]	C	A	3.494e^-4	0.907	INTRON CG34354
3R	3163050	3R_3163050_SNP [dm3] 3R_7337328_SNP [dm6]	T	A	3.500e^-4	0.907	INTERGENIC
2L	16031859	2L_16031859_DEL [dm3] 2L_16031859_DEL [dm6]	AA	A	3.500e^-4	0.907	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
3L	4209992	3L_4209992_SNP [dm3] 3L_4209992_SNP [dm6]	G	A	3.508e^-4	0.907	UPSTREAM Cpr64Aa DOWNSTREAM Cpr64Ab INTRON CG43367
3R	6484207	3R_6484207_SNP [dm3] 3R_10658485_SNP [dm6]	C	T	3.508e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22416708	3L_22416708_SNP [dm3] 3L_22423608_SNP [dm6]	G	A	3.517e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	15504976	3L_15504976_SNP [dm3] 3L_15511876_SNP [dm6]	G	A	3.525e^-4	0.907	UPSTREAM Eip71CD DOWNSTREAM gdl INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15505091	3L_15505091_SNP [dm3] 3L_15511991_SNP [dm6]	C	T	3.525e^-4	0.907	START_GAINED Eip71CD UTR_5_PRIME Eip71CD DOWNSTREAM gdl INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12642964	2R_12642964_SNP [dm3] 2R_16755459_SNP [dm6]	G	A	3.532e^-4	0.907	SYNONYMOUS_CODING CG5267 DOWNSTREAM CG34189 INTRON unc-104	TF binding site mE1_TFBS_chinmo
3R	26454870	3R_26454870_SNP [dm3] 3R_30629148_SNP [dm6]	G	A	3.533e^-4	0.907	UPSTREAM CG2267 INTERGENIC
2R	6352974	2R_6352974_DEL [dm3] 2R_10465469_DEL [dm6]	AA	A	3.543e^-4	0.907	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10320440	2R_10320440_SNP [dm3] 2R_14432935_SNP [dm6]	A	C	3.544e^-4	0.907	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9442577	X_9442577_SNP [dm3] X_9548544_SNP [dm6]	A	T	3.548e^-4	0.907	INTRON CG32700
2L	9036478	2L_9036478_SNP [dm3] 2L_9036478_SNP [dm6]	T	G	3.548e^-4	0.907	INTERGENIC
2L	9036480	2L_9036480_SNP [dm3] 2L_9036480_SNP [dm6]	T	G	3.548e^-4	0.907	INTERGENIC
2L	9036482	2L_9036482_SNP [dm3] 2L_9036482_SNP [dm6]	A	T	3.548e^-4	0.907	INTERGENIC
2L	13611104	2L_13611104_SNP [dm3] 2L_13611104_SNP [dm6]	A	G	3.555e^-4	0.907	INTRON kuz
2R	13554611	2R_13554611_SNP [dm3] 2R_17667106_SNP [dm6]	C	T	3.555e^-4	0.907	SYNONYMOUS_CODING eIF3-S8	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8648817	3L_8648817_SNP [dm3] 3L_8655717_SNP [dm6]	G	T	3.564e^-4	0.907	INTERGENIC
3R	27648790	3R_27648790_SNP [dm3] 3R_31823068_SNP [dm6]	G	T	3.565e^-4	0.907	INTRON RhoGAP100F	TF binding site mE1_TFBS_Trl
3R	25639589	3R_25639589_SNP [dm3] 3R_29813867_SNP [dm6]	T	C	3.584e^-4	0.907	SYNONYMOUS_CODING ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	18779985	2L_18779985_SNP [dm3] 2L_18779985_SNP [dm6]	G	A	3.587e^-4	0.907	SYNONYMOUS_CODING ham	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	8897460	X_8897460_SNP [dm3] X_9003427_SNP [dm6]	C	T	3.590e^-4	0.907	INTRON rdgA & 1 other
3L	9866309	3L_9866309_SNP [dm3] 3L_9873209_SNP [dm6]	A	T	3.593e^-4	0.907	INTERGENIC
3L	15504633	3L_15504633_SNP [dm3] 3L_15511533_SNP [dm6]	G	T	3.602e^-4	0.907	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23600036	3R_23600036_SNP [dm3] 3R_27774314_SNP [dm6]	C	A	3.603e^-4	0.907	INTRON CG34353	TF binding site mE1_TFBS_chinmo
X	6430989	X_6430989_SNP [dm3] X_6536956_SNP [dm6]	C	T	3.606e^-4	0.907	SYNONYMOUS_CODING dx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15175221	2L_15175221_SNP [dm3] 2L_15175221_SNP [dm6]	C	T	3.608e^-4	0.907	INTRON CG4168
2R	19226746	2R_19226746_SNP [dm3] 2R_23339223_SNP [dm6]	C	A	3.617e^-4	0.907	INTERGENIC
X	2525335	X_2525335_SNP [dm3] X_2631302_SNP [dm6]	A	G	3.628e^-4	0.907	INTRON PI4KIIIalpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21833484	3R_21833484_SNP [dm3] 3R_26007762_SNP [dm6]	A	G	3.631e^-4	0.907	UPSTREAM CR45039 INTERGENIC
3R	7295555	3R_7295555_SNP [dm3] 3R_11469833_SNP [dm6]	A	G	3.636e^-4	0.907	INTERGENIC
2L	9538630	2L_9538630_SNP [dm3] 2L_9538630_SNP [dm6]	G	T	3.639e^-4	0.907	NON_SYNONYMOUS_CODING Oatp30B
2L	17343293	2L_17343293_SNP [dm3] 2L_17343293_SNP [dm6]	G	T	3.639e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20324093	3R_20324093_SNP [dm3] 3R_24498371_SNP [dm6]	G	A	3.640e^-4	0.907	INTERGENIC
2R	18003332	2R_18003332_SNP [dm3] 2R_22115827_SNP [dm6]	G	A	3.644e^-4	0.907	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
3R	15763320	3R_15763320_SNP [dm3] 3R_19937598_SNP [dm6]	A	G	3.645e^-4	0.907	SYNONYMOUS_CODING Hs6st	TF binding site mE1_TFBS_chinmo
2R	10415658	2R_10415658_SNP [dm3] 2R_14528153_SNP [dm6]	A	T	3.648e^-4	0.907	INTRON ttv
2L	13397258	2L_13397258_SNP [dm3] 2L_13397258_SNP [dm6]	A	G	3.650e^-4	0.907	SYNONYMOUS_CODING CG10859	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16785469	X_16785469_SNP [dm3] X_16891436_SNP [dm6]	A	T	3.654e^-4	0.907	DOWNSTREAM CG13002 INTERGENIC
3R	26684320	3R_26684320_INS [dm3] 3R_30858598_INS [dm6]	T	TCT	3.663e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15240165	2L_15240165_SNP [dm3] 2L_15240165_SNP [dm6]	T	A	3.665e^-4	0.907	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3546744	2R_3546744_SNP [dm3] 2R_7659239_SNP [dm6]	G	A	3.665e^-4	0.907	DOWNSTREAM CG1339 & 1 other INTERGENIC
2R	8430337	2R_8430337_SNP [dm3] 2R_12542832_SNP [dm6]	A	C	3.674e^-4	0.907	INTRON fra
3L	22847381	3L_22847381_SNP [dm3] 3L_22854281_SNP [dm6]	A	G	3.683e^-4	0.907	UPSTREAM CG32462 DOWNSTREAM CG32459 & 1 other EXON CR43426	transposable element FlyBase
3L	16647309	3L_16647309_SNP [dm3] 3L_16654209_SNP [dm6]	G	A	3.693e^-4	0.907	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	14692995	2L_14692995_SNP [dm3] 2L_14692995_SNP [dm6]	G	A	3.695e^-4	0.907	INTERGENIC
3L	8447984	3L_8447984_SNP [dm3] 3L_8454884_SNP [dm6]	C	T	3.699e^-4	0.907	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	21354817	X_21354817_INS [dm3] X_21483790_INS [dm6]	T	TTGGGCGTTGGGCGTT...	3.715e^-4	0.907	UPSTREAM CR45511 INTERGENIC
2R	14120187	2R_14120187_INS [dm3] 2R_18232682_INS [dm6]	A	GAGAGAG	3.715e^-4	0.907	UPSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7068085	2R_7068085_INS [dm3] 2R_11180580_INS [dm6]	T	TT	3.718e^-4	0.907	INTRON shn
3L	9376954	3L_9376954_SNP [dm3] 3L_9383854_SNP [dm6]	T	C	3.719e^-4	0.907	UPSTREAM Hsp27 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12730286	3L_12730286_SNP [dm3] 3L_12737186_SNP [dm6]	G	A	3.729e^-4	0.907	SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8870097	2R_8870097_SNP [dm3] 2R_12982592_SNP [dm6]	A	C	3.733e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15430859	2R_15430859_SNP [dm3] 2R_19543354_SNP [dm6]	G	C	3.734e^-4	0.907	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	25953494	3R_25953494_SNP [dm3] 3R_30127772_SNP [dm6]	C	T	3.734e^-4	0.907	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
3L	12718316	3L_12718316_SNP [dm3] 3L_12725216_SNP [dm6]	A	T	3.738e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17433617	3R_17433617_INS [dm3] 3R_21607895_INS [dm6]	T	TTAACATTTAACACT...	3.744e^-4	0.907	INTRON InR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	26028649	3R_26028649_SNP [dm3] 3R_30202927_SNP [dm6]	C	T	3.752e^-4	0.907	UTR_5_PRIME CG9743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22805833	3R_22805833_SNP [dm3] 3R_26980111_SNP [dm6]	G	C	3.770e^-4	0.907	UPSTREAM CG14253 INTRON CG14253	TF binding site mE1_TFBS_Trl
2R	7615564	2R_7615564_SNP [dm3] 2R_11728059_SNP [dm6]	C	A	3.771e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_cad
X	19083845	X_19083845_SNP [dm3] X_19189812_SNP [dm6]	G	T	3.777e^-4	0.907	SPLICE_SITE_REGION Mec2 UPSTREAM HP1D3csd INTRON Mec2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17562190	2L_17562190_SNP [dm3] 2L_17562190_SNP [dm6]	A	G	3.782e^-4	0.907	INTERGENIC
3L	16647294	3L_16647294_INS [dm3] 3L_16654194_INS [dm6]	A	ATAAA	3.783e^-4	0.907	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3R	26271254	3R_26271254_SNP [dm3] 3R_30445532_SNP [dm6]	A	C	3.786e^-4	0.907	UPSTREAM Osi23 DOWNSTREAM aralar1 INTERGENIC
3L	15509570	3L_15509570_SNP [dm3] 3L_15516470_SNP [dm6]	A	G	3.795e^-4	0.907	DOWNSTREAM CG13454 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7521076	2L_7521076_SNP [dm3] 2L_7521076_SNP [dm6]	G	A	3.800e^-4	0.907	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	6436201	3R_6436201_SNP [dm3] 3R_10610479_SNP [dm6]	A	C	3.805e^-4	0.907	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20424139	2L_20424139_SNP [dm3] 2L_20424139_SNP [dm6]	T	A	3.805e^-4	0.907	INTRON CG15130	TF binding site mE1_TFBS_cad
2R	12144943	2R_12144943_SNP [dm3] 2R_16257438_SNP [dm6]	A	G	3.812e^-4	0.907	INTRON CngA
2R	8432310	2R_8432310_SNP [dm3] 2R_12544805_SNP [dm6]	G	A	3.820e^-4	0.907	UPSTREAM CG33752 INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3201867	3R_3201867_SNP [dm3] 3R_7376145_SNP [dm6]	A	G	3.827e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7198276	2R_7198276_SNP [dm3] 2R_11310771_SNP [dm6]	T	G	3.828e^-4	0.907	UPSTREAM CG43114 DOWNSTREAM CG7745 INTRON nompA	TF binding site mE1_TFBS_cad
X	21435393	X_21435393_SNP [dm3] X_21564366_SNP [dm6]	T	A	3.829e^-4	0.907	INTERGENIC
2L	18325403	2L_18325403_SNP [dm3] 2L_18325403_SNP [dm6]	G	A	3.841e^-4	0.907	INTRON Fas3
2R	12144909	2R_12144909_SNP [dm3] 2R_16257404_SNP [dm6]	A	C	3.845e^-4	0.907	INTRON CngA
X	7701018	X_7701018_SNP [dm3] X_7806985_SNP [dm6]	T	G	3.849e^-4	0.907	INTERGENIC
3L	11340245	3L_11340245_SNP [dm3] 3L_11347145_SNP [dm6]	A	C	3.860e^-4	0.907	INTERGENIC
2R	12640937	2R_12640937_SNP [dm3] 2R_16753432_SNP [dm6]	A	G	3.867e^-4	0.907	SYNONYMOUS_CODING unc-104 UTR_3_PRIME unc-104
3R	26419307	3R_26419307_SNP [dm3] 3R_30593585_SNP [dm6]	C	T	3.890e^-4	0.907	SYNONYMOUS_CODING CG2246	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19757248	2L_19757248_SNP [dm3] 2L_19757248_SNP [dm6]	C	A	3.894e^-4	0.907	UTR_3_PRIME CG10628 UPSTREAM CG10631
X	13674597	X_13674597_SNP [dm3] X_13780564_SNP [dm6]	C	T	3.902e^-4	0.907	SYNONYMOUS_CODING CtsB1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	14737537	3L_14737537_SNP [dm3] 3L_14744437_SNP [dm6]	G	A	3.907e^-4	0.907	SYNONYMOUS_CODING ome
2R	11456240	2R_11456240_SNP [dm3] 2R_15568735_SNP [dm6]	G	A	3.912e^-4	0.907	UPSTREAM CG30466 DOWNSTREAM Cdk5 INTRON Flo1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2L	21918902	2L_21918902_SNP [dm3] 2L_21918902_SNP [dm6]	A	G	3.914e^-4	0.907	INTRON CG11634
3L	15503434	3L_15503434_SNP [dm3] 3L_15510334_SNP [dm6]	A	G	3.916e^-4	0.907	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	4333134	X_4333134_SNP [dm3] X_4439101_SNP [dm6]	G	A	3.919e^-4	0.907	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
3L	21597451	3L_21597451_SNP [dm3] 3L_21604351_SNP [dm6]	G	A	3.925e^-4	0.907	INTRON TfAP-2	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25890585	3R_25890585_SNP [dm3] 3R_30064863_SNP [dm6]	C	A	3.926e^-4	0.907	INTRON sima	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8499929	2R_8499929_SNP [dm3] 2R_12612424_SNP [dm6]	T	A	3.932e^-4	0.907	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
2L	11872173	2L_11872173_SNP [dm3] 2L_11872173_SNP [dm6]	C	T	3.934e^-4	0.907	INTRON Pde1c
3L	14737509	3L_14737509_SNP [dm3] 3L_14744409_SNP [dm6]	G	T	3.948e^-4	0.907	NON_SYNONYMOUS_CODING ome
3L	11341795	3L_11341795_SNP [dm3] 3L_11348695_SNP [dm6]	C	T	3.952e^-4	0.907	DOWNSTREAM CR45251 INTERGENIC
3L	10717908	3L_10717908_SNP [dm3] 3L_10724808_SNP [dm6]	A	T	3.956e^-4	0.907	INTERGENIC
2R	16815156	2R_16815156_SNP [dm3] 2R_20927651_SNP [dm6]	A	T	3.957e^-4	0.907	INTRON Rx
3L	1491811	3L_1491811_SNP [dm3] 3L_1491811_SNP [dm6]	A	G	3.966e^-4	0.907	SYNONYMOUS_CODING CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	21441926	X_21441926_SNP [dm3] X_21570899_SNP [dm6]	T	A	3.970e^-4	0.907	INTERGENIC
3R	11617750	3R_11617750_SNP [dm3] 3R_15792028_SNP [dm6]	G	A	3.976e^-4	0.907	NON_SYNONYMOUS_CODING c_3_G UPSTREAM Acyp2	TF binding site BDTNP1_TFBS_dl
2L	2424627	2L_2424627_SNP [dm3] 2L_2424627_SNP [dm6]	C	T	3.988e^-4	0.907	UTR_3_PRIME CG9886 UPSTREAM CG44139
3R	5417100	3R_5417100_SNP [dm3] 3R_9591378_SNP [dm6]	G	A	3.989e^-4	0.907	UTR_5_PRIME CG8312 UPSTREAM CG8312 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	961469	2L_961469_SNP [dm3] 2L_961469_SNP [dm6]	A	C	3.994e^-4	0.907	INTERGENIC
2R	18727775	2R_18727775_SNP [dm3] 2R_22840252_SNP [dm6]	G	C	4.012e^-4	0.907	UPSTREAM CG9826 DOWNSTREAM CG9825 INTERGENIC
2L	14071598	2L_14071598_SNP [dm3] 2L_14071598_SNP [dm6]	A	T	4.029e^-4	0.907	INTRON nAChRalpha5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18178787	2R_18178787_SNP [dm3] 2R_22291282_SNP [dm6]	T	G	4.036e^-4	0.907	UPSTREAM CR43422 INTERGENIC
2L	953002	2L_953002_SNP [dm3] 2L_953002_SNP [dm6]	G	T	4.037e^-4	0.907	NON_SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6048222	3L_6048222_SNP [dm3] 3L_6055122_SNP [dm6]	T	C	4.042e^-4	0.907	UPSTREAM tan & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
X	13674549	X_13674549_SNP [dm3] X_13780516_SNP [dm6]	G	A	4.047e^-4	0.907	SYNONYMOUS_CODING CtsB1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	11941958	2L_11941958_SNP [dm3] 2L_11941958_SNP [dm6]	T	A	4.068e^-4	0.907	INTERGENIC	regulatory region REDfly_CRMs
3R	26271261	3R_26271261_SNP [dm3] 3R_30445539_SNP [dm6]	T	A	4.070e^-4	0.907	UPSTREAM Osi23 DOWNSTREAM aralar1 INTERGENIC
3R	26271265	3R_26271265_SNP [dm3] 3R_30445543_SNP [dm6]	A	T	4.070e^-4	0.907	UPSTREAM Osi23 DOWNSTREAM aralar1 INTERGENIC
3R	26271273	3R_26271273_SNP [dm3] 3R_30445551_SNP [dm6]	G	A	4.070e^-4	0.907	UPSTREAM Osi23 DOWNSTREAM aralar1 INTERGENIC
X	16866410	X_16866410_SNP [dm3] X_16972377_SNP [dm6]	A	T	4.070e^-4	0.907	UTR_3_PRIME CG45002
2R	16102549	2R_16102549_SNP [dm3] 2R_20215044_SNP [dm6]	A	C	4.071e^-4	0.907	INTERGENIC
3L	22308278	3L_22308278_SNP [dm3] 3L_22315178_SNP [dm6]	A	T	4.074e^-4	0.907	INTRON Ten-m
3L	16647343	3L_16647343_SNP [dm3] 3L_16654243_SNP [dm6]	T	G	4.077e^-4	0.907	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2R	17182699	2R_17182699_SNP [dm3] 2R_21295194_SNP [dm6]	A	G	4.079e^-4	0.907	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	17921789	X_17921789_SNP [dm3] X_18027756_SNP [dm6]	A	C	4.079e^-4	0.907	INTRON Sh & 1 other
3R	23576464	3R_23576464_SNP [dm3] 3R_27750742_SNP [dm6]	A	G	4.081e^-4	0.907	INTERGENIC
2R	7207435	2R_7207435_SNP [dm3] 2R_11319930_SNP [dm6]	G	A	4.084e^-4	0.907	SYNONYMOUS_CODING Or47b
3L	15940764	3L_15940764_DEL [dm3] 3L_15947664_DEL [dm6]	TCGGGAAAGGGGTTACACT...	T	4.090e^-4	0.907	INTRON Pka-C3
2R	3387363	2R_3387363_SNP [dm3] 2R_7499858_SNP [dm6]	C	A	4.095e^-4	0.907	UTR_5_PRIME dpa UPSTREAM didum	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	800689	2L_800689_SNP [dm3] 2L_800689_SNP [dm6]	G	A	4.099e^-4	0.907	DOWNSTREAM CR45259 INTERGENIC
2R	17654897	2R_17654897_SNP [dm3] 2R_21767392_SNP [dm6]	C	A	4.103e^-4	0.907	NON_SYNONYMOUS_CODING CG30395
2R	11626068	2R_11626068_SNP [dm3] 2R_15738563_SNP [dm6]	G	A	4.116e^-4	0.907	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Kr
2R	17253364	2R_17253364_SNP [dm3] 2R_21365859_SNP [dm6]	T	G	4.125e^-4	0.907	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	21426188	X_21426188_SNP [dm3] X_21555161_SNP [dm6]	A	G	4.131e^-4	0.907	INTERGENIC	transposable element FlyBase
3L	2219101	3L_2219101_SNP [dm3] 3L_2219101_SNP [dm6]	G	A	4.135e^-4	0.907	INTERGENIC
2L	800864	2L_800864_SNP [dm3] 2L_800864_SNP [dm6]	T	C	4.149e^-4	0.907	DOWNSTREAM CR45259 INTERGENIC
3R	22676840	3R_22676840_SNP [dm3] 3R_26851118_SNP [dm6]	G	C	4.153e^-4	0.907	INTRON Lerp	TF binding site mE1_TFBS_inv
2L	4000179	2L_4000179_SNP [dm3] 2L_4000179_SNP [dm6]	C	A	4.160e^-4	0.907	SYNONYMOUS_CODING CG43797 UPSTREAM CR45344
3R	6474795	3R_6474795_SNP [dm3] 3R_10649073_SNP [dm6]	C	A	4.161e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	9784720	2L_9784720_SNP [dm3] 2L_9784720_SNP [dm6]	C	T	4.169e^-4	0.907	INTRON IP3K1
2L	12910908	2L_12910908_SNP [dm3] 2L_12910908_SNP [dm6]	C	G	4.170e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13622874	X_13622874_SNP [dm3] X_13728841_SNP [dm6]	T	A	4.177e^-4	0.907	INTRON g	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11332357	X_11332357_SNP [dm3] X_11438324_SNP [dm6]	C	A	4.186e^-4	0.907	INTRON Evi5
3R	6048780	3R_6048780_INS [dm3] 3R_10223058_INS [dm6]	T	TAAGGATATC	4.189e^-4	0.907	DOWNSTREAM CG12817 & 1 other INTRON CG12420	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18299813	2L_18299813_SNP [dm3] 2L_18299813_SNP [dm6]	C	A	4.204e^-4	0.907	INTERGENIC
2R	11758799	2R_11758799_SNP [dm3] 2R_15871294_SNP [dm6]	C	T	4.204e^-4	0.907	UTR_3_PRIME sli	TF binding site mE1_TFBS_cad
X	6424876	X_6424876_DEL [dm3] X_6530843_DEL [dm6]	AA	A	4.205e^-4	0.907	DOWNSTREAM RpL7A & 2 others INTERGENIC
2L	16216194	2L_16216194_INS [dm3] 2L_16216194_INS [dm6]	A	ACGTAGTTTACAGAGAATCA...	4.210e^-4	0.907	DOWNSTREAM CR43840 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	9660495	3R_9660495_SNP [dm3] 3R_13834773_SNP [dm6]	G	A	4.210e^-4	0.907	SYNONYMOUS_CODING Nsf2
2L	18455346	2L_18455346_INS [dm3] 2L_18455346_INS [dm6]	A	AC	4.213e^-4	0.907	UTR_3_PRIME Ntf-2r UPSTREAM bsf & 1 other	TF binding site BDTNP1_TFBS_dl
2L	13745923	2L_13745923_SNP [dm3] 2L_13745923_SNP [dm6]	T	C	4.218e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26352784	3R_26352784_SNP [dm3] 3R_30527062_SNP [dm6]	G	A	4.218e^-4	0.907	UPSTREAM jdp INTERGENIC
2R	7068146	2R_7068146_SNP [dm3] 2R_11180641_SNP [dm6]	A	T	4.232e^-4	0.907	INTRON shn
2R	10830561	2R_10830561_SNP [dm3] 2R_14943056_SNP [dm6]	T	C	4.237e^-4	0.907	SYNONYMOUS_CODING CG10257
2R	17651774	2R_17651774_DEL [dm3] 2R_21764269_DEL [dm6]	CC	C	4.238e^-4	0.907	UTR_5_PRIME CG43982 UPSTREAM CR43983 DOWNSTREAM CR43984
2L	13626889	2L_13626889_DEL [dm3] 2L_13626889_DEL [dm6]	TCTGAACTGCAGTAAAAAGA...	T	4.251e^-4	0.907	INTRON kuz
X	21011267	X_21011267_SNP [dm3] X_21140240_SNP [dm6]	T	A	4.253e^-4	0.907	UTR_3_PRIME CG34120
2R	17980230	2R_17980230_SNP [dm3] 2R_22092725_SNP [dm6]	A	G	4.254e^-4	0.907	SPLICE_SITE_REGION CG11073 SYNONYMOUS_CODING CG11073 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11846618	X_11846618_SNP [dm3] X_11952585_SNP [dm6]	C	T	4.254e^-4	0.907	INTRON cac	TF binding site mE1_TFBS_HSA
X	11834999	X_11834999_SNP [dm3] X_11940966_SNP [dm6]	G	A	4.258e^-4	0.907	INTRON cac
2L	18324667	2L_18324667_SNP [dm3] 2L_18324667_SNP [dm6]	A	T	4.259e^-4	0.907	INTRON Fas3
3L	10758342	3L_10758342_SNP [dm3] 3L_10765242_SNP [dm6]	G	A	4.261e^-4	0.907	INTERGENIC
2L	18314708	2L_18314708_SNP [dm3] 2L_18314708_SNP [dm6]	T	A	4.270e^-4	0.907	UPSTREAM CR44489 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17927204	2R_17927204_SNP [dm3] 2R_22039699_SNP [dm6]	G	A	4.283e^-4	0.907	UPSTREAM CG34370 INTERGENIC
2L	17343287	2L_17343287_SNP [dm3] 2L_17343287_SNP [dm6]	G	A	4.290e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_cad
2L	10222773	2L_10222773_SNP [dm3] 2L_10222773_SNP [dm6]	G	T	4.300e^-4	0.907	UTR_5_PRIME CG4908 DOWNSTREAM Prosalpha6 INTRON CG4908	TF binding site BDTNP1_TFBS_dl
3R	14062278	3R_14062278_SNP [dm3] 3R_18236556_SNP [dm6]	T	C	4.305e^-4	0.907	SYNONYMOUS_CODING repo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	27015464	3R_27015464_DEL [dm3] 3R_31189742_DEL [dm6]	CC	C	4.309e^-4	0.907	INTRON mesh
X	13708842	X_13708842_SNP [dm3] X_13814809_SNP [dm6]	G	A	4.309e^-4	0.907	SYNONYMOUS_CODING Clic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11753556	2R_11753556_SNP [dm3] 2R_15866051_SNP [dm6]	G	A	4.315e^-4	0.907	NON_SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18615685	2L_18615685_SNP [dm3] 2L_18615685_SNP [dm6]	C	T	4.317e^-4	0.907	SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7249973	2L_7249973_SNP [dm3] 2L_7249973_SNP [dm6]	G	A	4.318e^-4	0.907	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	8366215	3R_8366215_SNP [dm3] 3R_12540493_SNP [dm6]	G	T	4.322e^-4	0.907	INTRON Octbeta3R
3L	12442748	3L_12442748_SNP [dm3] 3L_12449648_SNP [dm6]	G	T	4.323e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17028397	2L_17028397_SNP [dm3] 2L_17028397_SNP [dm6]	A	G	4.335e^-4	0.907	INTERGENIC
2R	3646532	2R_3646532_SNP [dm3] 2R_7759027_SNP [dm6]	G	T	4.348e^-4	0.907	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_z
3L	6466295	3L_6466295_SNP [dm3] 3L_6473195_SNP [dm6]	G	A	4.359e^-4	0.907	INTRON CG42747	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13050749	2L_13050749_SNP [dm3] 2L_13050749_SNP [dm6]	T	G	4.370e^-4	0.907	INTRON CG9932
3L	8313237	3L_8313237_SNP [dm3] 3L_8320137_SNP [dm6]	C	A	4.371e^-4	0.907	UPSTREAM CG13670 INTERGENIC
X	1941877	X_1941877_SNP [dm3] X_2047844_SNP [dm6]	T	C	4.375e^-4	0.907	INTRON CG4313 & 1 other
2L	20814085	2L_20814085_SNP [dm3] 2L_20814085_SNP [dm6]	T	C	4.382e^-4	0.907	UTR_3_PRIME CG9328 DOWNSTREAM CG33322 & 1 other
3L	4214246	3L_4214246_SNP [dm3] 3L_4214246_SNP [dm6]	T	C	4.388e^-4	0.907	INTRON CG43367	TF binding site mE1_TFBS_cad
2R	10008263	2R_10008263_SNP [dm3] 2R_14120758_SNP [dm6]	A	G	4.389e^-4	0.907	INTRON Prosap	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	756112	2L_756112_SNP [dm3] 2L_756112_SNP [dm6]	T	G	4.396e^-4	0.907	INTRON GABA-B-R3
2R	9871658	2R_9871658_SNP [dm3] 2R_13984153_SNP [dm6]	T	G	4.396e^-4	0.907	UPSTREAM Ctf4 DOWNSTREAM RN-tre INTRON CG8067	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13019472	2R_13019472_SNP [dm3] 2R_17131967_SNP [dm6]	T	C	4.399e^-4	0.907	UPSTREAM CR45273 INTERGENIC
3L	11339594	3L_11339594_SNP [dm3] 3L_11346494_SNP [dm6]	C	G	4.412e^-4	0.907	INTERGENIC
3R	26271278	3R_26271278_MNP [dm3] 3R_30445556_MNP [dm6]	TAC	GCA	4.416e^-4	0.907	UPSTREAM Osi23 DOWNSTREAM aralar1 INTERGENIC
2L	19755415	2L_19755415_SNP [dm3] 2L_19755415_SNP [dm6]	A	G	4.424e^-4	0.907	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	4295794	3L_4295794_SNP [dm3] 3L_4295794_SNP [dm6]	G	A	4.432e^-4	0.907	SYNONYMOUS_CODING dyl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7062577	X_7062577_SNP [dm3] X_7168544_SNP [dm6]	C	G	4.443e^-4	0.907	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6693733	2R_6693733_SNP [dm3] 2R_10806228_SNP [dm6]	G	A	4.460e^-4	0.907	INTRON wde	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	18394300	2L_18394300_SNP [dm3] 2L_18394300_SNP [dm6]	T	G	4.470e^-4	0.907	DOWNSTREAM Fas3 INTERGENIC
3L	16647328	3L_16647328_SNP [dm3] 3L_16654228_SNP [dm6]	T	A	4.477e^-4	0.907	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
X	9109314	X_9109314_SNP [dm3] X_9215281_SNP [dm6]	T	C	4.479e^-4	0.907	SYNONYMOUS_CODING Obp8a UPSTREAM CG15368
3L	12443491	3L_12443491_SNP [dm3] 3L_12450391_SNP [dm6]	G	C	4.486e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	518143	3L_518143_SNP [dm3] 3L_518143_SNP [dm6]	C	T	4.496e^-4	0.907	INTRON klar	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	793842	2L_793842_SNP [dm3] 2L_793842_SNP [dm6]	C	T	4.497e^-4	0.907	INTERGENIC
2L	14513721	2L_14513721_INS [dm3] 2L_14513721_INS [dm6]	G	GG	4.498e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	13939827	3R_13939827_SNP [dm3] 3R_18114105_SNP [dm6]	G	A	4.511e^-4	0.907	INTRON sr
2L	19811894	2L_19811894_SNP [dm3] 2L_19811894_SNP [dm6]	A	T	4.516e^-4	0.907	UPSTREAM snRNA:U2:38ABb DOWNSTREAM snRNA:U5:38ABa INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16647228	3L_16647228_INS [dm3] 3L_16654128_INS [dm6]	T	TGCAAGGATCTG...	4.522e^-4	0.907	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	801777	2L_801777_SNP [dm3] 2L_801777_SNP [dm6]	G	A	4.524e^-4	0.907	INTERGENIC
2R	3537326	2R_3537326_SNP [dm3] 2R_7649821_SNP [dm6]	C	A	4.524e^-4	0.907	UTR_3_PRIME CG43340 INTRON CG43340	insulator Insulator_Class_II.mE01
2R	12568564	2R_12568564_SNP [dm3] 2R_16681059_SNP [dm6]	G	C	4.530e^-4	0.907	SYNONYMOUS_CODING CG30463
2R	19206608	2R_19206608_SNP [dm3] 2R_23319085_SNP [dm6]	A	G	4.543e^-4	0.907	SYNONYMOUS_CODING CG30412 INTRON CG30412	TF binding site mE1_TFBS_chinmo
2L	18455726	2L_18455726_SNP [dm3] 2L_18455726_SNP [dm6]	C	A	4.561e^-4	0.907	DOWNSTREAM Ntf-2r EXON let-7-C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1420330	3L_1420330_SNP [dm3] 3L_1420330_SNP [dm6]	C	G	4.569e^-4	0.907	DOWNSTREAM CG9173 INTRON Ptp61F
3L	20165140	3L_20165140_SNP [dm3] 3L_20172040_SNP [dm6]	C	G	4.572e^-4	0.907	INTRON CG42674	TF binding site BDTNP1_TFBS_twi
2L	16776827	2L_16776827_SNP [dm3] 2L_16776827_SNP [dm6]	T	A	4.577e^-4	0.907	INTRON Mhc
3R	15186199	3R_15186199_SNP [dm3] 3R_19360477_SNP [dm6]	C	A	4.578e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	10320433	2R_10320433_SNP [dm3] 2R_14432928_SNP [dm6]	G	T	4.579e^-4	0.907	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16688083	X_16688083_SNP [dm3] X_16794050_SNP [dm6]	T	C	4.579e^-4	0.907	INTRON CG4768	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	12247990	2R_12247990_SNP [dm3] 2R_16360485_SNP [dm6]	C	T	4.590e^-4	0.907	SYNONYMOUS_CODING CG6262 UTR_5_PRIME CG6262 UPSTREAM CR45322	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7061945	X_7061945_SNP [dm3] X_7167912_SNP [dm6]	T	C	4.591e^-4	0.907	INTRON CG9650 & 1 other EXON CR44357
3R	21655637	3R_21655637_SNP [dm3] 3R_25829915_SNP [dm6]	T	A	4.592e^-4	0.907	UPSTREAM Mst57Dc DOWNSTREAM Sfp96F & 1 other INTERGENIC
3L	9726588	3L_9726588_SNP [dm3] 3L_9733488_SNP [dm6]	G	A	4.592e^-4	0.907	DOWNSTREAM mir-4986 & 1 other INTRON CG6749
2L	17857259	2L_17857259_SNP [dm3] 2L_17857259_SNP [dm6]	G	A	4.596e^-4	0.907	INTRON CadN2
3L	4028567	3L_4028567_SNP [dm3] 3L_4028567_SNP [dm6]	T	C	4.597e^-4	0.907	UTR_3_PRIME Gr64a UPSTREAM Gr64b & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9865121	3L_9865121_SNP [dm3] 3L_9872021_SNP [dm6]	C	T	4.598e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_D
2L	15143996	2L_15143996_SNP [dm3] 2L_15143996_SNP [dm6]	G	A	4.611e^-4	0.907	INTERGENIC
3R	22742758	3R_22742758_SNP [dm3] 3R_26917036_SNP [dm6]	T	C	4.618e^-4	0.907	INTRON sda
2L	15775278	2L_15775278_SNP [dm3] 2L_15775278_SNP [dm6]	A	G	4.621e^-4	0.907	INTERGENIC
X	19552073	X_19552073_SNP [dm3] X_19658040_SNP [dm6]	G	A	4.622e^-4	0.907	NON_SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14783045	2R_14783045_SNP [dm3] 2R_18895540_SNP [dm6]	C	G	4.634e^-4	0.907	INTRON sano
2L	8667007	2L_8667007_SNP [dm3] 2L_8667007_SNP [dm6]	A	T	4.637e^-4	0.907	UTR_3_PRIME Sema-1a	TF binding site mE1_TFBS_cad
X	1937706	X_1937706_SNP [dm3] X_2043673_SNP [dm6]	C	G	4.641e^-4	0.907	NON_SYNONYMOUS_CODING CG4325 DOWNSTREAM moody INTRON CG4313	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	11410498	3L_11410498_SNP [dm3] 3L_11417398_SNP [dm6]	G	T	4.648e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	7819896	3R_7819896_SNP [dm3] 3R_11994174_SNP [dm6]	C	A	4.655e^-4	0.907	UPSTREAM mfas DOWNSTREAM Tk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2721519	3L_2721519_SNP [dm3] 3L_2721519_SNP [dm6]	G	C	4.656e^-4	0.907	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_chinmo
2L	20811680	2L_20811680_SNP [dm3] 2L_20811680_SNP [dm6]	T	C	4.657e^-4	0.907	INTRON CG9328
2L	12279654	2L_12279654_SNP [dm3] 2L_12279654_SNP [dm6]	T	C	4.671e^-4	0.907	INTRON aret
2R	8513961	2R_8513961_SNP [dm3] 2R_12626456_SNP [dm6]	C	G	4.673e^-4	0.907	INTRON CG17760
X	8883011	X_8883011_SNP [dm3] X_8988978_SNP [dm6]	T	A	4.673e^-4	0.907	INTRON rdgA & 1 other
3L	9872987	3L_9872987_SNP [dm3] 3L_9879887_SNP [dm6]	T	C	4.677e^-4	0.907	INTRON CG34382
3R	22684852	3R_22684852_SNP [dm3] 3R_26859130_SNP [dm6]	C	T	4.680e^-4	0.907	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2R	7664048	2R_7664048_SNP [dm3] 2R_11776543_SNP [dm6]	A	G	4.683e^-4	0.907	INTRON ths	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10828956	2R_10828956_SNP [dm3] 2R_14941451_SNP [dm6]	A	G	4.688e^-4	0.907	UPSTREAM CG10257 DOWNSTREAM Lap1 INTERGENIC
3L	16647288	3L_16647288_SNP [dm3] 3L_16654188_SNP [dm6]	T	A	4.689e^-4	0.907	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	14470221	2L_14470221_SNP [dm3] 2L_14470221_SNP [dm6]	C	T	4.719e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18723929	2R_18723929_SNP [dm3] 2R_22836406_SNP [dm6]	G	T	4.722e^-4	0.907	SYNONYMOUS_CODING CG12490 UPSTREAM CG9825
2L	16031878	2L_16031878_SNP [dm3] 2L_16031878_SNP [dm6]	G	C	4.735e^-4	0.907	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
2R	7201650	2R_7201650_SNP [dm3] 2R_11314145_SNP [dm6]	C	T	4.737e^-4	0.907	SYNONYMOUS_CODING nompA INTRON nompA	TF binding site mE1_TFBS_cad
3L	4043743	3L_4043743_SNP [dm3] 3L_4043743_SNP [dm6]	T	C	4.737e^-4	0.907	INTERGENIC
2R	6758233	2R_6758233_SNP [dm3] 2R_10870728_SNP [dm6]	G	A	4.741e^-4	0.907	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	21426970	X_21426970_SNP [dm3] X_21555943_SNP [dm6]	T	C	4.748e^-4	0.907	INTERGENIC	transposable element FlyBase
2R	5416434	2R_5416434_SNP [dm3] 2R_9528929_SNP [dm6]	T	C	4.752e^-4	0.907	INTRON brp
2R	18954413	2R_18954413_SNP [dm3] 2R_23066890_SNP [dm6]	C	A	4.754e^-4	0.907	SYNONYMOUS_CODING PPO3 UPSTREAM l_2_k09913	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12390109	2R_12390109_SNP [dm3] 2R_16502604_SNP [dm6]	A	G	4.760e^-4	0.907	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14405275	X_14405275_SNP [dm3] X_14511242_SNP [dm6]	G	C	4.763e^-4	0.907	INTERGENIC
2L	18288175	2L_18288175_SNP [dm3] 2L_18288175_SNP [dm6]	G	A	4.774e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4788805	3L_4788805_SNP [dm3] 3L_4788805_SNP [dm6]	T	C	4.774e^-4	0.907	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
2L	20057260	2L_20057260_SNP [dm3] 2L_20057260_SNP [dm6]	C	A	4.781e^-4	0.907	DOWNSTREAM sNPF & 1 other INTERGENIC
3R	26329568	3R_26329568_INS [dm3] 3R_30503846_INS [dm6]	C	CAATAGC	4.782e^-4	0.907	UPSTREAM CG31371 INTRON PH4alphaSG1
2L	11482203	2L_11482203_SNP [dm3] 2L_11482203_SNP [dm6]	C	T	4.786e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18267572	2R_18267572_SNP [dm3] 2R_22380067_SNP [dm6]	G	A	4.792e^-4	0.907	INTRON wrapper
2R	12018263	2R_12018263_SNP [dm3] 2R_16130758_SNP [dm6]	T	G	4.797e^-4	0.907	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	12768987	X_12768987_SNP [dm3] X_12874954_SNP [dm6]	G	A	4.801e^-4	0.907	INTRON Pde9
2R	17659893	2R_17659893_SNP [dm3] 2R_21772388_SNP [dm6]	G	A	4.813e^-4	0.907	UPSTREAM CG4021 INTERGENIC
3R	17618700	3R_17618700_SNP [dm3] 3R_21792978_SNP [dm6]	T	A	4.815e^-4	0.907	INTRON CASK	TF binding site mE1_TFBS_cad
2L	9299247	2L_9299247_SNP [dm3] 2L_9299247_SNP [dm6]	T	G	4.815e^-4	0.907	UTR_3_PRIME Ggamma30A
2R	19290176	2R_19290176_SNP [dm3] 2R_23402653_SNP [dm6]	C	T	4.818e^-4	0.907	UPSTREAM CG3520 INTERGENIC
3L	14438973	3L_14438973_SNP [dm3] 3L_14445873_SNP [dm6]	A	G	4.820e^-4	0.907	INTRON bbg	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
3L	11100507	3L_11100507_SNP [dm3] 3L_11107407_SNP [dm6]	C	G	4.820e^-4	0.907	UTR_5_PRIME CG32073 UPSTREAM CG12522 & 1 other
X	21440472	X_21440472_SNP [dm3] X_21569445_SNP [dm6]	G	C	4.823e^-4	0.907	INTERGENIC
2R	10768103	2R_10768103_SNP [dm3] 2R_14880598_SNP [dm6]	T	C	4.828e^-4	0.907	SYNONYMOUS_CODING Cyp6a9 DOWNSTREAM Cyp6a19	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	4538840	3L_4538840_INS [dm3] 3L_4538840_INS [dm6]	T	TTT	4.829e^-4	0.907	DOWNSTREAM CG32243 INTRON CG11353	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6201484	X_6201484_SNP [dm3] X_6307451_SNP [dm6]	C	T	4.842e^-4	0.907	DOWNSTREAM CG3823 INTERGENIC
3L	8316866	3L_8316866_MNP [dm3] 3L_8323766_MNP [dm6]	ACT	TAA	4.853e^-4	0.907	INTERGENIC
3R	23498569	3R_23498569_SNP [dm3] 3R_27672847_SNP [dm6]	T	C	4.859e^-4	0.907	INTRON unc80	TF binding site mE1_TFBS_chinmo
X	1963344	X_1963344_SNP [dm3] X_2069311_SNP [dm6]	A	G	4.866e^-4	0.907	SYNONYMOUS_CODING CG4194 INTRON CG4199	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	18324697	2L_18324697_SNP [dm3] 2L_18324697_SNP [dm6]	T	A	4.868e^-4	0.907	INTRON Fas3
2R	7512927	2R_7512927_SNP [dm3] 2R_11625422_SNP [dm6]	T	G	4.870e^-4	0.907	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26331619	3R_26331619_SNP [dm3] 3R_30505897_SNP [dm6]	T	A	4.873e^-4	0.907	UPSTREAM CG15539 & 2 others INTERGENIC
2L	15168858	2L_15168858_SNP [dm3] 2L_15168858_SNP [dm6]	A	T	4.878e^-4	0.907	INTRON CG4168
2L	15456407	2L_15456407_SNP [dm3] 2L_15456407_SNP [dm6]	T	G	4.883e^-4	0.907	INTERGENIC
X	13327526	X_13327526_SNP [dm3] X_13433493_SNP [dm6]	A	G	4.887e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6691425	2R_6691425_SNP [dm3] 2R_10803920_SNP [dm6]	A	G	4.892e^-4	0.907	NON_SYNONYMOUS_CODING wde
X	18033040	X_18033040_SNP [dm3] X_18139007_SNP [dm6]	A	G	4.893e^-4	0.907	DOWNSTREAM CG43229 INTERGENIC
3L	1236753	3L_1236753_SNP [dm3] 3L_1236753_SNP [dm6]	T	C	4.897e^-4	0.907	SYNONYMOUS_CODING CG9194 DOWNSTREAM CG9192	TF binding site mE1_TFBS_chinmo
2L	19868468	2L_19868468_SNP [dm3] 2L_19868468_SNP [dm6]	G	A	4.918e^-4	0.907	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	6253893	2L_6253893_SNP [dm3] 2L_6253893_SNP [dm6]	T	G	4.918e^-4	0.907	INTRON Ddr	TF binding site mE1_TFBS_Trl
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	4.925e^-4	0.907	INTRON Mhc
2L	2420684	2L_2420684_INS [dm3] 2L_2420684_INS [dm6]	T	TT	4.926e^-4	0.907	UPSTREAM CG34447 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01
3R	2493551	3R_2493551_SNP [dm3] 3R_6667829_SNP [dm6]	C	A	4.928e^-4	0.907	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	15511098	3L_15511098_SNP [dm3] 3L_15517998_SNP [dm6]	C	A	4.931e^-4	0.907	SYNONYMOUS_CODING mex1 UPSTREAM CG13454	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12364152	2L_12364152_SNP [dm3] 2L_12364152_SNP [dm6]	T	G	4.940e^-4	0.907	INTRON bru-2
3L	13117722	3L_13117722_DEL [dm3] 3L_13124622_DEL [dm6]	GC	A	4.940e^-4	0.907	INTERGENIC
3L	14737426	3L_14737426_SNP [dm3] 3L_14744326_SNP [dm6]	T	C	4.952e^-4	0.907	SYNONYMOUS_CODING ome
2R	10218356	2R_10218356_SNP [dm3] 2R_14330851_SNP [dm6]	C	T	4.953e^-4	0.907	INTRON Shroom
2R	18492541	2R_18492541_SNP [dm3] 2R_22605036_SNP [dm6]	G	T	4.959e^-4	0.907	SYNONYMOUS_CODING CG4294 UPSTREAM RpS16	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7564175	3L_7564175_SNP [dm3] 3L_7571075_SNP [dm6]	A	G	4.963e^-4	0.907	INTERGENIC
X	13010791	X_13010791_SNP [dm3] X_13116758_SNP [dm6]	A	T	4.965e^-4	0.907	INTRON CG42237
X	4331818	X_4331818_SNP [dm3] X_4437785_SNP [dm6]	T	A	4.967e^-4	0.907	INTRON CR32773 & 1 other
2L	7520090	2L_7520090_DEL [dm3] 2L_7520090_DEL [dm6]	AAG	A	4.968e^-4	0.907	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6618958	3R_6618958_SNP [dm3] 3R_10793236_SNP [dm6]	T	C	4.983e^-4	0.907	SYNONYMOUS_CODING CG14687 DOWNSTREAM CG14692	TF binding site BDTNP1_TFBS_twi
2L	4627339	2L_4627339_INS [dm3] 2L_4627339_INS [dm6]	T	TT	4.991e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18644771	3R_18644771_SNP [dm3] 3R_22819049_SNP [dm6]	C	A	4.996e^-4	0.907	INTERGENIC
3L	8880918	3L_8880918_SNP [dm3] 3L_8887818_SNP [dm6]	C	T	5.006e^-4	0.907	DOWNSTREAM CG43169 INTRON dally
3L	16013819	3L_16013819_SNP [dm3] 3L_16020719_SNP [dm6]	T	A	5.006e^-4	0.907	EXON CR43949	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18394399	2L_18394399_SNP [dm3] 2L_18394399_SNP [dm6]	A	G	5.010e^-4	0.907	DOWNSTREAM Fas3 INTERGENIC
3L	20673662	3L_20673662_SNP [dm3] 3L_20680562_SNP [dm6]	C	T	5.010e^-4	0.907	INTERGENIC
3L	22854973	3L_22854973_INS [dm3] 3L_22861873_INS [dm6]	T	TT	5.010e^-4	0.907	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	3254020	3L_3254020_SNP [dm3] 3L_3254020_SNP [dm6]	T	A	5.017e^-4	0.907	EXON CR43626
3L	1120666	3L_1120666_SNP [dm3] 3L_1120666_SNP [dm6]	A	C	5.020e^-4	0.907	INTERGENIC
3L	9709992	3L_9709992_SNP [dm3] 3L_9716892_SNP [dm6]	G	A	5.025e^-4	0.907	UTR_3_PRIME vsg DOWNSTREAM CG18178 & 1 other
2R	13018456	2R_13018456_SNP [dm3] 2R_17130951_SNP [dm6]	A	G	5.028e^-4	0.907	DOWNSTREAM CR45273 & 1 other INTERGENIC
3L	8857559	3L_8857559_SNP [dm3] 3L_8864459_SNP [dm6]	A	G	5.034e^-4	0.907	INTRON dally
2R	16125570	2R_16125570_SNP [dm3] 2R_20238065_SNP [dm6]	T	C	5.035e^-4	0.907	DOWNSTREAM CG13869 INTRON CG11099
2R	9408342	2R_9408342_SNP [dm3] 2R_13520837_SNP [dm6]	T	G	5.042e^-4	0.907	UPSTREAM CG13331 INTRON Vmat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16155717	X_16155717_SNP [dm3] X_16261684_SNP [dm6]	C	A	5.042e^-4	0.907	INTERGENIC
3R	15920143	3R_15920143_SNP [dm3] 3R_20094421_SNP [dm6]	G	C	5.050e^-4	0.907	INTERGENIC
3R	5085228	3R_5085228_SNP [dm3] 3R_9259506_SNP [dm6]	C	A	5.051e^-4	0.907	INTRON CG8436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15410429	2L_15410429_SNP [dm3] 2L_15410429_SNP [dm6]	A	G	5.062e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15090340	2L_15090340_SNP [dm3] 2L_15090340_SNP [dm6]	T	A	5.065e^-4	0.907	INTRON CG15270
3R	17618570	3R_17618570_SNP [dm3] 3R_21792848_SNP [dm6]	A	G	5.067e^-4	0.907	INTRON CASK	TF binding site mE1_TFBS_cad
3L	17703773	3L_17703773_SNP [dm3] 3L_17710673_SNP [dm6]	G	A	5.073e^-4	0.907	INTRON Ccn
2L	9646052	2L_9646052_SNP [dm3] 2L_9646052_SNP [dm6]	C	G	5.082e^-4	0.907	SYNONYMOUS_CODING Apoltp
2L	13106644	2L_13106644_DEL [dm3] 2L_13106644_DEL [dm6]	AA	A	5.085e^-4	0.907	UPSTREAM CG5142 INTERGENIC
2L	555600	2L_555600_SNP [dm3] 2L_555600_SNP [dm6]	C	T	5.089e^-4	0.907	SYNONYMOUS_CODING rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	953615	2L_953615_SNP [dm3] 2L_953615_SNP [dm6]	G	T	5.092e^-4	0.907	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1373356	2L_1373356_DEL [dm3] 2L_1373356_DEL [dm6]	CAGC	C	5.093e^-4	0.907	INTERGENIC
2L	13627038	2L_13627038_SNP [dm3] 2L_13627038_SNP [dm6]	G	A	5.106e^-4	0.907	INTRON kuz
2L	19250342	2L_19250342_SNP [dm3] 2L_19250342_SNP [dm6]	C	A	5.107e^-4	0.907	INTERGENIC
2L	13626838	2L_13626838_SNP [dm3] 2L_13626838_SNP [dm6]	C	T	5.114e^-4	0.907	INTRON kuz
3L	512260	3L_512260_SNP [dm3] 3L_512260_SNP [dm6]	C	G	5.117e^-4	0.907	INTRON klar
2L	15410470	2L_15410470_SNP [dm3] 2L_15410470_SNP [dm6]	C	A	5.132e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9134365	2R_9134365_SNP [dm3] 2R_13246860_SNP [dm6]	C	G	5.133e^-4	0.907	INTRON Mp20	TF binding site mE1_TFBS_cad
3L	3254227	3L_3254227_SNP [dm3] 3L_3254227_SNP [dm6]	C	T	5.140e^-4	0.907	EXON CR43626
2L	13743347	2L_13743347_SNP [dm3] 2L_13743347_SNP [dm6]	C	T	5.146e^-4	0.907	INTERGENIC
2R	12642668	2R_12642668_SNP [dm3] 2R_16755163_SNP [dm6]	A	C	5.151e^-4	0.907	NON_SYNONYMOUS_START CG5267 DOWNSTREAM CG34189 INTRON unc-104
3L	17688441	3L_17688441_SNP [dm3] 3L_17695341_SNP [dm6]	C	A	5.152e^-4	0.907	INTRON Ccn
2R	18005615	2R_18005615_SNP [dm3] 2R_22118110_SNP [dm6]	T	C	5.158e^-4	0.907	INTRON Vrp1
3R	13263162	3R_13263162_SNP [dm3] 3R_17437440_SNP [dm6]	G	A	5.161e^-4	0.907	INTRON CG5873
2R	13558430	2R_13558430_DEL [dm3] 2R_17670925_DEL [dm6]	AT	C	5.170e^-4	0.907	UPSTREAM CR44404 DOWNSTREAM CG30108 & 2 others INTERGENIC
3L	14228615	3L_14228615_SNP [dm3] 3L_14235515_SNP [dm6]	G	T	5.172e^-4	0.907	NON_SYNONYMOUS_CODING CG34244 DOWNSTREAM CG7924	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16003485	3R_16003485_SNP [dm3] 3R_20177763_SNP [dm6]	T	C	5.193e^-4	0.907	INTERGENIC
2R	9864393	2R_9864393_SNP [dm3] 2R_13976888_SNP [dm6]	T	C	5.195e^-4	0.907	NON_SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1346210	2L_1346210_SNP [dm3] 2L_1346210_SNP [dm6]	G	A	5.199e^-4	0.907	UPSTREAM CR45005 EXON CR45006
2R	14519557	2R_14519557_SNP [dm3] 2R_18632052_SNP [dm6]	A	G	5.200e^-4	0.907	UPSTREAM CG5482 DOWNSTREAM CG30122 INTERGENIC
2L	12364157	2L_12364157_SNP [dm3] 2L_12364157_SNP [dm6]	A	G	5.201e^-4	0.907	INTRON bru-2
2R	10294983	2R_10294983_DEL [dm3] 2R_14407478_DEL [dm6]	TT	T	5.204e^-4	0.907	UPSTREAM CR44369 INTERGENIC
2L	19526340	2L_19526340_SNP [dm3] 2L_19526340_SNP [dm6]	G	T	5.205e^-4	0.907	UTR_5_PRIME CG10166 UPSTREAM CG10137 DOWNSTREAM CG10132 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15169424	2L_15169424_SNP [dm3] 2L_15169424_SNP [dm6]	T	C	5.206e^-4	0.907	INTRON CG4168
3R	9656993	3R_9656993_SNP [dm3] 3R_13831271_SNP [dm6]	A	C	5.207e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18324780	2L_18324780_SNP [dm3] 2L_18324780_SNP [dm6]	A	C	5.217e^-4	0.907	INTRON Fas3
3L	10655312	3L_10655312_SNP [dm3] 3L_10662212_SNP [dm6]	G	A	5.230e^-4	0.907	SYNONYMOUS_CODING CG8003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

ActivityTotal_2hrs phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results