DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.106e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.07387

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.3601	0.0668

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2712 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	5539104	X_5539104_SNP [dm3] X_5645071_SNP [dm6]	G	A	1.536e^-7	0.288	INTRON CG42492
3R	2389634	3R_2389634_SNP [dm3] 3R_6563912_SNP [dm6]	G	A	6.703e^-7	0.375	INTRON dpr11
X	5539114	X_5539114_SNP [dm3] X_5645081_SNP [dm6]	A	T	7.468e^-7	0.375	INTRON CG42492
3L	21897475	3L_21897475_SNP [dm3] 3L_21904375_SNP [dm6]	T	C	9.846e^-7	0.375	INTRON mub	TF binding site BDTNP1_TFBS_twi
X	5539225	X_5539225_SNP [dm3] X_5645192_SNP [dm6]	C	T	1.634e^-6	0.375	INTRON CG42492
3R	2676301	3R_2676301_SNP [dm3] 3R_6850579_SNP [dm6]	G	A	1.767e^-6	0.375	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	11101047	3L_11101047_SNP [dm3] 3L_11107947_SNP [dm6]	G	A	1.793e^-6	0.375	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
3L	22167541	3L_22167541_SNP [dm3] 3L_22174441_SNP [dm6]	G	C	2.002e^-6	0.375	INTRON olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	2702245	3R_2702245_SNP [dm3] 3R_6876523_SNP [dm6]	A	C	2.134e^-6	0.375	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
3L	17691275	3L_17691275_SNP [dm3] 3L_17698175_SNP [dm6]	G	T	2.140e^-6	0.375	INTRON Ccn
2L	7412987	2L_7412987_INS [dm3] 2L_7412987_INS [dm6]	A	AACA	2.686e^-6	0.375	DOWNSTREAM CG15818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7817368	3L_7817368_SNP [dm3] 3L_7824268_SNP [dm6]	C	A	2.815e^-6	0.375	INTRON Pdp1
3R	2750893	3R_2750893_SNP [dm3] 3R_6925171_SNP [dm6]	C	G	3.569e^-6	0.375	INTRON Antp
3R	26310390	3R_26310390_SNP [dm3] 3R_30484668_SNP [dm6]	G	A	3.690e^-6	0.375	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2759723	3R_2759723_SNP [dm3] 3R_6934001_SNP [dm6]	T	A	3.815e^-6	0.375	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	2718658	3R_2718658_SNP [dm3] 3R_6892936_SNP [dm6]	T	A	3.905e^-6	0.375	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2676467	3R_2676467_SNP [dm3] 3R_6850745_SNP [dm6]	T	C	3.947e^-6	0.375	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7591383	2L_7591383_SNP [dm3] 2L_7591383_SNP [dm6]	A	C	4.097e^-6	0.375	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2656519	3R_2656519_SNP [dm3] 3R_6830797_SNP [dm6]	C	G	4.123e^-6	0.375	INTRON Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	2674803	3R_2674803_INS [dm3] 3R_6849081_INS [dm6]	T	TTCTC	4.182e^-6	0.375	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	15213696	X_15213696_SNP [dm3] X_15319663_SNP [dm6]	A	C	4.326e^-6	0.375	UTR_5_PRIME Top1 UPSTREAM Top1 DOWNSTREAM mir-4957 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22167626	3L_22167626_SNP [dm3] 3L_22174526_SNP [dm6]	A	T	4.430e^-6	0.375	INTRON olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	26310391	3R_26310391_SNP [dm3] 3R_30484669_SNP [dm6]	C	T	4.597e^-6	0.375	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6309094	2R_6309094_SNP [dm3] 2R_10421589_SNP [dm6]	A	G	5.649e^-6	0.412	UTR_5_PRIME CG11825 UPSTREAM CG33474 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	8608374	X_8608374_SNP [dm3] X_8714341_SNP [dm6]	A	T	5.726e^-6	0.412	UPSTREAM CG1785 & 1 other INTRON CG2004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13846813	3R_13846813_SNP [dm3] 3R_18021091_SNP [dm6]	C	T	5.857e^-6	0.412	UTR_3_PRIME DNaseII UPSTREAM CG7785	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	8540502	3L_8540502_SNP [dm3] 3L_8547402_SNP [dm6]	A	G	5.927e^-6	0.412	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7591366	2L_7591366_SNP [dm3] 2L_7591366_SNP [dm6]	G	A	6.479e^-6	0.414	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2674814	3R_2674814_MNP [dm3] 3R_6849092_MNP [dm6]	TTT	AAA	6.908e^-6	0.414	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	13245644	3L_13245644_SNP [dm3] 3L_13252544_SNP [dm6]	C	T	7.027e^-6	0.414	INTRON caps
3R	2676473	3R_2676473_SNP [dm3] 3R_6850751_SNP [dm6]	C	T	7.235e^-6	0.414	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6890138	2L_6890138_SNP [dm3] 2L_6890138_SNP [dm6]	A	G	7.359e^-6	0.414	INTRON Nlg2
3L	4913502	3L_4913502_SNP [dm3] 3L_4913502_SNP [dm6]	C	T	7.532e^-6	0.414	SYNONYMOUS_CODING Rh50
3R	26317368	3R_26317368_SNP [dm3] 3R_30491646_SNP [dm6]	A	G	7.559e^-6	0.414	SYNONYMOUS_CODING PH4alphaSG2 DOWNSTREAM PH4alphaMP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7817367	3L_7817367_SNP [dm3] 3L_7824267_SNP [dm6]	A	G	7.728e^-6	0.414	INTRON Pdp1
3R	2724626	3R_2724626_SNP [dm3] 3R_6898904_SNP [dm6]	A	T	8.260e^-6	0.423	INTRON Antp
3R	2676450	3R_2676450_SNP [dm3] 3R_6850728_SNP [dm6]	C	A	8.660e^-6	0.423	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	2676435	3R_2676435_SNP [dm3] 3R_6850713_SNP [dm6]	A	T	8.831e^-6	0.423	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	5539103	X_5539103_SNP [dm3] X_5645070_SNP [dm6]	C	A	9.126e^-6	0.423	INTRON CG42492
3R	2689610	3R_2689610_SNP [dm3] 3R_6863888_SNP [dm6]	C	G	9.144e^-6	0.423	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2R	17762938	2R_17762938_SNP [dm3] 2R_21875433_SNP [dm6]	C	T	9.409e^-6	0.423	INTRON Fili	TF binding site mE1_TFBS_sens
3R	10201142	3R_10201142_INS [dm3] 3R_14375420_INS [dm6]	C	CC	9.484e^-6	0.423	EXON CR44943
2L	10531601	2L_10531601_SNP [dm3] 2L_10531601_SNP [dm6]	T	G	9.704e^-6	0.423	UTR_3_PRIME Lip4 UPSTREAM CG18301 DOWNSTREAM Lip4
3R	5443361	3R_5443361_SNP [dm3] 3R_9617639_SNP [dm6]	G	C	1.021e^-5	0.433	INTRON CG8312
2L	4247335	2L_4247335_SNP [dm3] 2L_4247335_SNP [dm6]	A	G	1.068e^-5	0.433	INTRON CR44059
3R	2726859	3R_2726859_SNP [dm3] 3R_6901137_SNP [dm6]	G	A	1.073e^-5	0.433	INTRON Antp
3R	2674811	3R_2674811_SNP [dm3] 3R_6849089_SNP [dm6]	T	A	1.150e^-5	0.433	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	2668629	3R_2668629_SNP [dm3] 3R_6842907_SNP [dm6]	T	A	1.165e^-5	0.433	INTRON Scr	regulatory region FlyBase REDfly_CRMs
X	5538875	X_5538875_SNP [dm3] X_5644842_SNP [dm6]	C	T	1.168e^-5	0.433	INTRON CG42492
3L	7518010	3L_7518010_SNP [dm3] 3L_7524910_SNP [dm6]	C	T	1.176e^-5	0.433	SYNONYMOUS_CODING ltl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2750817	3R_2750817_SNP [dm3] 3R_6925095_SNP [dm6]	A	T	1.177e^-5	0.433	INTRON Antp
3R	2609787	3R_2609787_SNP [dm3] 3R_6784065_SNP [dm6]	T	A	1.222e^-5	0.441	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17298480	2R_17298480_SNP [dm3] 2R_21410975_SNP [dm6]	C	A	1.290e^-5	0.448	INTRON Sdc
2L	9831451	2L_9831451_SNP [dm3] 2L_9831451_SNP [dm6]	T	A	1.351e^-5	0.448	INTRON nAChRalpha6
3R	2747769	3R_2747769_SNP [dm3] 3R_6922047_SNP [dm6]	A	T	1.386e^-5	0.448	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2674818	3R_2674818_INS [dm3] 3R_6849096_INS [dm6]	G	GA	1.400e^-5	0.448	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17691264	3L_17691264_SNP [dm3] 3L_17698164_SNP [dm6]	A	C	1.444e^-5	0.448	INTRON Ccn
3L	18829398	3L_18829398_SNP [dm3] 3L_18836298_SNP [dm6]	G	T	1.466e^-5	0.448	INTRON Indy
2R	18503868	2R_18503868_DEL [dm3] 2R_22616363_DEL [dm6]	TT	T	1.499e^-5	0.448	INTRON CG33143	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2088643	3L_2088643_SNP [dm3] 3L_2088643_SNP [dm6]	C	T	1.508e^-5	0.448	UTR_3_PRIME sls INTRON sls & 1 other EXON CR42860	TF binding site mE1_TFBS_HSA
X	5538898	X_5538898_SNP [dm3] X_5644865_SNP [dm6]	C	T	1.522e^-5	0.448	INTRON CG42492
3R	18164075	3R_18164075_SNP [dm3] 3R_22338353_SNP [dm6]	A	T	1.552e^-5	0.448	INTRON CG5388	TF binding site mE1_TFBS_Trl
3L	3801606	3L_3801606_INS [dm3] 3L_3801606_INS [dm6]	T	TAA	1.559e^-5	0.448	UPSTREAM CG32264 INTRON CG32264
3R	2470880	3R_2470880_SNP [dm3] 3R_6645158_SNP [dm6]	A	G	1.584e^-5	0.448	UPSTREAM CG1315 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26316210	3R_26316210_SNP [dm3] 3R_30490488_SNP [dm6]	G	T	1.628e^-5	0.448	SYNONYMOUS_CODING PH4alphaSG2 DOWNSTREAM Jon99Fi
3R	2472492	3R_2472492_SNP [dm3] 3R_6646770_SNP [dm6]	C	A	1.643e^-5	0.448	UPSTREAM Taf1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	2679512	3R_2679512_SNP [dm3] 3R_6853790_SNP [dm6]	G	A	1.653e^-5	0.448	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2680814	3R_2680814_SNP [dm3] 3R_6855092_SNP [dm6]	G	A	1.670e^-5	0.448	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	26310381	3R_26310381_SNP [dm3] 3R_30484659_SNP [dm6]	T	A	1.708e^-5	0.448	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7800502	X_7800502_SNP [dm3] X_7906469_SNP [dm6]	T	G	1.712e^-5	0.448	INTRON dpr14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4133776	X_4133776_SNP [dm3] X_4239743_SNP [dm6]	A	T	1.723e^-5	0.448	INTERGENIC
3R	19266793	3R_19266793_SNP [dm3] 3R_23441071_SNP [dm6]	G	A	1.731e^-5	0.448	INTRON CG4374
3L	6439795	3L_6439795_SNP [dm3] 3L_6446695_SNP [dm6]	A	G	1.757e^-5	0.448	INTRON CG42747
3R	2731767	3R_2731767_SNP [dm3] 3R_6906045_SNP [dm6]	C	A	1.805e^-5	0.448	DOWNSTREAM Antp INTRON Antp
2R	8007603	2R_8007603_SNP [dm3] 2R_12120098_SNP [dm6]	T	C	1.868e^-5	0.448	UPSTREAM jeb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8007606	2R_8007606_SNP [dm3] 2R_12120101_SNP [dm6]	C	T	1.875e^-5	0.448	UPSTREAM jeb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5928270	X_5928270_SNP [dm3] X_6034237_SNP [dm6]	C	T	1.876e^-5	0.448	INTERGENIC
3L	18818442	3L_18818442_SNP [dm3] 3L_18825342_SNP [dm6]	G	C	1.925e^-5	0.448	INTRON Cat
3L	10774593	3L_10774593_SNP [dm3] 3L_10781493_SNP [dm6]	G	A	1.968e^-5	0.448	INTERGENIC
X	5538991	X_5538991_SNP [dm3] X_5644958_SNP [dm6]	T	A	2.014e^-5	0.448	INTRON CG42492
3R	2674809	3R_2674809_SNP [dm3] 3R_6849087_SNP [dm6]	A	T	2.026e^-5	0.448	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18503922	2R_18503922_SNP [dm3] 2R_22616417_SNP [dm6]	A	C	2.028e^-5	0.448	INTRON CG33143	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9954147	3R_9954147_SNP [dm3] 3R_14128425_SNP [dm6]	A	G	2.039e^-5	0.448	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	2676364	3R_2676364_SNP [dm3] 3R_6850642_SNP [dm6]	T	A	2.047e^-5	0.448	UPSTREAM Scr INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	2679505	3R_2679505_DEL [dm3] 3R_6853783_DEL [dm6]	CGCC	C	2.063e^-5	0.448	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7262457	3L_7262457_SNP [dm3] 3L_7269357_SNP [dm6]	A	G	2.068e^-5	0.448	SYNONYMOUS_CODING unc-13-4A
2L	13350161	2L_13350161_SNP [dm3] 2L_13350161_SNP [dm6]	G	T	2.091e^-5	0.448	UTR_3_PRIME CG9395
3R	2708489	3R_2708489_SNP [dm3] 3R_6882767_SNP [dm6]	C	G	2.136e^-5	0.448	INTRON CR44931	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	18903801	3R_18903801_SNP [dm3] 3R_23078079_SNP [dm6]	T	C	2.147e^-5	0.448	INTRON CG13830
X	6735220	X_6735220_SNP [dm3] X_6841187_SNP [dm6]	A	G	2.149e^-5	0.448	INTRON CG14435
2R	9583005	2R_9583005_SNP [dm3] 2R_13695500_SNP [dm6]	T	C	2.186e^-5	0.451	INTRON fas
2R	18503878	2R_18503878_SNP [dm3] 2R_22616373_SNP [dm6]	G	T	2.244e^-5	0.453	INTRON CG33143	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2681248	3R_2681248_SNP [dm3] 3R_6855526_SNP [dm6]	G	A	2.255e^-5	0.453	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	2674838	3R_2674838_SNP [dm3] 3R_6849116_SNP [dm6]	T	A	2.272e^-5	0.453	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2732209	3R_2732209_SNP [dm3] 3R_6906487_SNP [dm6]	G	T	2.347e^-5	0.463	DOWNSTREAM Antp INTRON Antp	TF binding site BDTNP1_TFBS_prd
3R	18903820	3R_18903820_SNP [dm3] 3R_23078098_SNP [dm6]	C	T	2.372e^-5	0.463	INTRON CG13830
2L	3320439	2L_3320439_DEL [dm3] 2L_3320439_DEL [dm6]	GACGAGG	G	2.453e^-5	0.463	SPLICE_SITE_REGION CG8837 UTR_5_PRIME CG8837 UPSTREAM CG3326
X	5950826	X_5950826_SNP [dm3] X_6056793_SNP [dm6]	T	C	2.454e^-5	0.463	INTRON CG5921	TF binding site BDTNP1_TFBS_twi
2L	4250784	2L_4250784_SNP [dm3] 2L_4250784_SNP [dm6]	G	T	2.524e^-5	0.463	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12821182	2R_12821182_DEL [dm3] 2R_16933677_DEL [dm6]	TTC	T	2.548e^-5	0.463	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3L	4089604	3L_4089604_SNP [dm3] 3L_4089604_SNP [dm6]	G	A	2.613e^-5	0.463	UPSTREAM Gad1 INTRON CG14989
X	5538888	X_5538888_SNP [dm3] X_5644855_SNP [dm6]	T	A	2.617e^-5	0.463	INTRON CG42492
X	3543429	X_3543429_SNP [dm3] X_3649396_SNP [dm6]	T	C	2.641e^-5	0.463	INTRON AstA-R1
3L	8415639	3L_8415639_DEL [dm3] 3L_8422539_DEL [dm6]	GTAAAGAGAG	G	2.654e^-5	0.463	UPSTREAM CG32354 INTERGENIC
3L	8415695	3L_8415695_INS [dm3] 3L_8422595_INS [dm6]	A	ACCCGTTTAACCTTAATCTA...	2.654e^-5	0.463	UPSTREAM CG32354 INTERGENIC
3L	8415722	3L_8415722_SNP [dm3] 3L_8422622_SNP [dm6]	A	G	2.654e^-5	0.463	UPSTREAM CG32354 INTERGENIC
3L	8415726	3L_8415726_SNP [dm3] 3L_8422626_SNP [dm6]	G	T	2.654e^-5	0.463	UPSTREAM CG32354 INTERGENIC
3R	2770356	3R_2770356_SNP [dm3] 3R_6944634_SNP [dm6]	G	T	2.725e^-5	0.463	INTRON Antp	TF binding site mE1_TFBS_cad
X	5199590	X_5199590_SNP [dm3] X_5305557_SNP [dm6]	G	T	2.778e^-5	0.463	UTR_5_PRIME CG3323 DOWNSTREAM CG17764 INTRON CG42749
3R	2780762	3R_2780762_SNP [dm3] 3R_6955040_SNP [dm6]	G	A	2.779e^-5	0.463	INTRON Antp
2L	5491931	2L_5491931_SNP [dm3] 2L_5491931_SNP [dm6]	A	G	2.805e^-5	0.463	INTERGENIC
3R	16533789	3R_16533789_SNP [dm3] 3R_20708067_SNP [dm6]	T	G	2.840e^-5	0.463	INTRON Oamb
2L	4247398	2L_4247398_SNP [dm3] 2L_4247398_SNP [dm6]	T	A	2.926e^-5	0.463	INTRON CR44059
2L	4247400	2L_4247400_SNP [dm3] 2L_4247400_SNP [dm6]	T	G	2.926e^-5	0.463	INTRON CR44059
2L	4247412	2L_4247412_SNP [dm3] 2L_4247412_SNP [dm6]	A	T	2.926e^-5	0.463	INTRON CR44059
3R	16533782	3R_16533782_SNP [dm3] 3R_20708060_SNP [dm6]	G	A	2.951e^-5	0.463	INTRON Oamb
X	13416348	X_13416348_SNP [dm3] X_13522315_SNP [dm6]	C	G	2.993e^-5	0.463	INTRON Neto
3R	26314506	3R_26314506_SNP [dm3] 3R_30488784_SNP [dm6]	T	G	2.997e^-5	0.463	UPSTREAM Jon99Fii & 1 other INTERGENIC
2L	10531503	2L_10531503_SNP [dm3] 2L_10531503_SNP [dm6]	A	G	3.028e^-5	0.463	UTR_3_PRIME Lip4 UPSTREAM CG18301
X	5538925	X_5538925_SNP [dm3] X_5644892_SNP [dm6]	C	A	3.035e^-5	0.463	INTRON CG42492
3R	2677236	3R_2677236_DEL [dm3] 3R_6851514_DEL [dm6]	CCCATTCCATTC...	C	3.063e^-5	0.463	INTERGENIC	regulatory region REDfly_CRMs
3R	25887361	3R_25887361_SNP [dm3] 3R_30061639_SNP [dm6]	T	C	3.129e^-5	0.463	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2917763	3L_2917763_SNP [dm3] 3L_2917763_SNP [dm6]	A	G	3.168e^-5	0.463	INTRON Shab
3R	2726346	3R_2726346_SNP [dm3] 3R_6900624_SNP [dm6]	G	C	3.176e^-5	0.463	INTRON Antp
X	12594643	X_12594643_DEL [dm3] X_12700610_DEL [dm6]	GA	G	3.201e^-5	0.463	INTRON Smr
3R	5443530	3R_5443530_SNP [dm3] 3R_9617808_SNP [dm6]	A	T	3.210e^-5	0.463	INTRON CG8312
X	7800416	X_7800416_SNP [dm3] X_7906383_SNP [dm6]	C	T	3.253e^-5	0.463	SYNONYMOUS_CODING dpr14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10947952	3L_10947952_SNP [dm3] 3L_10954852_SNP [dm6]	T	C	3.262e^-5	0.463	INTERGENIC
3R	14867069	3R_14867069_SNP [dm3] 3R_19041347_SNP [dm6]	A	C	3.270e^-5	0.463	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5733576	3L_5733576_SNP [dm3] 3L_5740476_SNP [dm6]	C	T	3.322e^-5	0.463	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
X	9213316	X_9213316_SNP [dm3] X_9319283_SNP [dm6]	T	C	3.342e^-5	0.463	UPSTREAM c12.2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	8540518	3L_8540518_SNP [dm3] 3L_8547418_SNP [dm6]	A	C	3.347e^-5	0.463	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26318664	3R_26318664_SNP [dm3] 3R_30492942_SNP [dm6]	A	C	3.364e^-5	0.463	NON_SYNONYMOUS_CODING PH4alphaMP DOWNSTREAM PH4alphaSG2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2782990	3R_2782990_SNP [dm3] 3R_6957268_SNP [dm6]	T	G	3.394e^-5	0.463	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5365611	X_5365611_SNP [dm3] X_5471578_SNP [dm6]	A	T	3.403e^-5	0.463	INTRON SPR
3L	7817331	3L_7817331_SNP [dm3] 3L_7824231_SNP [dm6]	T	C	3.456e^-5	0.463	INTRON Pdp1
3L	10775229	3L_10775229_SNP [dm3] 3L_10782129_SNP [dm6]	T	C	3.536e^-5	0.463	INTERGENIC
3L	7727192	3L_7727192_SNP [dm3] 3L_7734092_SNP [dm6]	A	G	3.553e^-5	0.463	INTRON CG32373 & 1 other
2L	6276998	2L_6276998_SNP [dm3] 2L_6276998_SNP [dm6]	C	T	3.556e^-5	0.463	INTRON Ddr
2R	11137091	2R_11137091_SNP [dm3] 2R_15249586_SNP [dm6]	T	C	3.587e^-5	0.463	INTRON scb	TF binding site mE1_TFBS_cad
3R	2668466	3R_2668466_SNP [dm3] 3R_6842744_SNP [dm6]	C	T	3.602e^-5	0.463	INTRON Scr	regulatory region FlyBase REDfly_CRMs
2R	13534461	2R_13534461_SNP [dm3] 2R_17646956_SNP [dm6]	T	C	3.629e^-5	0.463	UTR_3_PRIME CCHa1-R
2L	4250952	2L_4250952_SNP [dm3] 2L_4250952_SNP [dm6]	C	G	3.701e^-5	0.463	INTERGENIC
3R	2665701	3R_2665701_SNP [dm3] 3R_6839979_SNP [dm6]	G	A	3.722e^-5	0.463	INTRON Scr	regulatory region REDfly_CRMs
3R	2702130	3R_2702130_SNP [dm3] 3R_6876408_SNP [dm6]	A	G	3.742e^-5	0.463	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	2718652	3R_2718652_SNP [dm3] 3R_6892930_SNP [dm6]	C	T	3.767e^-5	0.463	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2712877	3R_2712877_SNP [dm3] 3R_6887155_SNP [dm6]	T	A	3.813e^-5	0.463	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4416817	3L_4416817_SNP [dm3] 3L_4416817_SNP [dm6]	C	A	3.817e^-5	0.463	INTRON DOR
2R	9582965	2R_9582965_SNP [dm3] 2R_13695460_SNP [dm6]	T	A	3.851e^-5	0.463	INTRON fas
2R	7911416	2R_7911416_SNP [dm3] 2R_12023911_SNP [dm6]	G	C	3.855e^-5	0.463	SYNONYMOUS_CODING CG8964	TF binding site mE1_TFBS_cad
X	7798517	X_7798517_SNP [dm3] X_7904484_SNP [dm6]	C	T	3.858e^-5	0.463	UTR_3_PRIME dpr14 DOWNSTREAM bys
2R	13992058	2R_13992058_SNP [dm3] 2R_18104553_SNP [dm6]	G	A	3.913e^-5	0.463	SYNONYMOUS_CODING CG5756
2L	6809911	2L_6809911_SNP [dm3] 2L_6809911_SNP [dm6]	G	A	3.941e^-5	0.463	INTERGENIC
3R	2375758	3R_2375758_SNP [dm3] 3R_6550036_SNP [dm6]	C	A	3.944e^-5	0.463	DOWNSTREAM Pif2 INTRON dpr11	TF binding site mE1_TFBS_HSA
3R	2731479	3R_2731479_INS [dm3] 3R_6905757_INS [dm6]	G	GTA	3.957e^-5	0.463	INTRON Antp
3R	23071537	3R_23071537_SNP [dm3] 3R_27245815_SNP [dm6]	C	T	3.960e^-5	0.463	UPSTREAM CG18766 DOWNSTREAM CG5984 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	2674822	3R_2674822_SNP [dm3] 3R_6849100_SNP [dm6]	G	C	3.965e^-5	0.463	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12824427	X_12824427_SNP [dm3] X_12930394_SNP [dm6]	A	C	4.006e^-5	0.463	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9562668	3L_9562668_SNP [dm3] 3L_9569568_SNP [dm6]	C	T	4.023e^-5	0.463	INTRON CG42673
2R	8779958	2R_8779958_SNP [dm3] 2R_12892453_SNP [dm6]	A	G	4.083e^-5	0.463	INTRON vg
3R	2682367	3R_2682367_SNP [dm3] 3R_6856645_SNP [dm6]	G	A	4.085e^-5	0.463	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	14893635	3R_14893635_DEL [dm3] 3R_19067913_DEL [dm6]	TT	T	4.099e^-5	0.463	INTRON cdi
3R	2733134	3R_2733134_SNP [dm3] 3R_6907412_SNP [dm6]	A	T	4.103e^-5	0.463	UTR_3_PRIME Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13750365	3R_13750365_SNP [dm3] 3R_17924643_SNP [dm6]	T	C	4.184e^-5	0.463	INTRON cpo
X	5928315	X_5928315_DEL [dm3] X_6034282_DEL [dm6]	TTC	T	4.220e^-5	0.463	INTERGENIC
3L	21252333	3L_21252333_SNP [dm3] 3L_21259233_SNP [dm6]	A	G	4.272e^-5	0.463	DOWNSTREAM CG43218 INTRON Eip78C
3R	2750540	3R_2750540_SNP [dm3] 3R_6924818_SNP [dm6]	G	A	4.280e^-5	0.463	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7977647	X_7977647_SNP [dm3] X_8083614_SNP [dm6]	G	T	4.297e^-5	0.463	UPSTREAM CR45535 DOWNSTREAM CG2256 INTERGENIC
2R	4981812	2R_4981812_SNP [dm3] 2R_9094307_SNP [dm6]	T	G	4.335e^-5	0.463	NON_SYNONYMOUS_CODING CG13741 UPSTREAM Uhg4	TF binding site mE1_TFBS_sens
3R	2677233	3R_2677233_SNP [dm3] 3R_6851511_SNP [dm6]	G	C	4.376e^-5	0.463	INTERGENIC	regulatory region REDfly_CRMs
3R	2410504	3R_2410504_SNP [dm3] 3R_6584782_SNP [dm6]	G	A	4.394e^-5	0.463	INTRON dpr11
2L	16965137	2L_16965137_SNP [dm3] 2L_16965137_SNP [dm6]	G	A	4.421e^-5	0.463	UPSTREAM CR45285 INTERGENIC
3L	15777917	3L_15777917_SNP [dm3] 3L_15784817_SNP [dm6]	C	A	4.423e^-5	0.463	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7015351	3L_7015351_DEL [dm3] 3L_7022251_DEL [dm6]	TTT	A	4.437e^-5	0.463	INTRON Mp
2R	4527149	2R_4527149_SNP [dm3] 2R_8639644_SNP [dm6]	G	T	4.449e^-5	0.463	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	2731580	3R_2731580_SNP [dm3] 3R_6905858_SNP [dm6]	A	G	4.456e^-5	0.463	INTRON Antp
3R	2727778	3R_2727778_SNP [dm3] 3R_6902056_SNP [dm6]	G	A	4.479e^-5	0.463	INTRON Antp
2L	16878414	2L_16878414_SNP [dm3] 2L_16878414_SNP [dm6]	T	C	4.496e^-5	0.463	UTR_3_PRIME CG32832 DOWNSTREAM CG32832 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22229615	3R_22229615_SNP [dm3] 3R_26403893_SNP [dm6]	T	C	4.500e^-5	0.463	UPSTREAM ppk15 INTERGENIC
2L	3379492	2L_3379492_SNP [dm3] 2L_3379492_SNP [dm6]	C	G	4.510e^-5	0.463	DOWNSTREAM Ptpa INTERGENIC
3L	21193195	3L_21193195_SNP [dm3] 3L_21200095_SNP [dm6]	T	C	4.520e^-5	0.463	NON_SYNONYMOUS_CODING CG33056 INTRON CG33054
3R	13846846	3R_13846846_SNP [dm3] 3R_18021124_SNP [dm6]	C	A	4.526e^-5	0.463	UTR_3_PRIME DNaseII UPSTREAM CG7785	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13846849	3R_13846849_SNP [dm3] 3R_18021127_SNP [dm6]	C	T	4.526e^-5	0.463	UTR_3_PRIME DNaseII UPSTREAM CG7785	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	5287975	2R_5287975_INS [dm3] 2R_9400470_INS [dm6]	T	TATT	4.540e^-5	0.463	UPSTREAM CG33774 DOWNSTREAM wun & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	12265991	2R_12265991_SNP [dm3] 2R_16378486_SNP [dm6]	T	G	4.685e^-5	0.473	UPSTREAM CR45316 DOWNSTREAM CR45317 INTERGENIC
3L	22167574	3L_22167574_SNP [dm3] 3L_22174474_SNP [dm6]	C	A	4.688e^-5	0.473	INTRON olf413	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18829698	3L_18829698_SNP [dm3] 3L_18836598_SNP [dm6]	A	T	4.773e^-5	0.477	INTRON Indy	TF binding site mE1_TFBS_zfh1
2R	12821161	2R_12821161_SNP [dm3] 2R_16933656_SNP [dm6]	A	G	4.801e^-5	0.477	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3R	2682886	3R_2682886_SNP [dm3] 3R_6857164_SNP [dm6]	A	G	4.823e^-5	0.477	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13490690	3R_13490690_SNP [dm3] 3R_17664968_SNP [dm6]	G	A	4.874e^-5	0.477	INTRON CG14322	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13350529	2L_13350529_SNP [dm3] 2L_13350529_SNP [dm6]	C	T	4.943e^-5	0.477	UTR_3_PRIME CG9395
3R	13846854	3R_13846854_INS [dm3] 3R_18021132_INS [dm6]	T	TG	4.948e^-5	0.477	UTR_3_PRIME DNaseII UPSTREAM CG7785	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	18818427	3L_18818427_SNP [dm3] 3L_18825327_SNP [dm6]	G	T	4.955e^-5	0.477	INTRON Cat
3L	7015347	3L_7015347_SNP [dm3] 3L_7022247_SNP [dm6]	T	C	4.959e^-5	0.477	INTRON Mp
3L	9087385	3L_9087385_SNP [dm3] 3L_9094285_SNP [dm6]	G	A	4.967e^-5	0.477	INTRON CG32032
X	5538902	X_5538902_SNP [dm3] X_5644869_SNP [dm6]	A	T	5.008e^-5	0.477	INTRON CG42492
3R	18903826	3R_18903826_SNP [dm3] 3R_23078104_SNP [dm6]	T	A	5.009e^-5	0.477	INTRON CG13830
3R	14672921	3R_14672921_SNP [dm3] 3R_18847199_SNP [dm6]	G	C	5.067e^-5	0.478	INTRON CG18208
3R	16885832	3R_16885832_SNP [dm3] 3R_21060110_SNP [dm6]	T	G	5.098e^-5	0.478	UTR_5_PRIME Mvl INTRON Mvl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	2664893	3R_2664893_SNP [dm3] 3R_6839171_SNP [dm6]	T	G	5.100e^-5	0.478	INTRON Scr	regulatory region REDfly_CRMs
3R	25597266	3R_25597266_SNP [dm3] 3R_29771544_SNP [dm6]	A	C	5.131e^-5	0.479	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9582960	2R_9582960_SNP [dm3] 2R_13695455_SNP [dm6]	C	T	5.193e^-5	0.482	INTRON fas
3R	2618140	3R_2618140_SNP [dm3] 3R_6792418_SNP [dm6]	T	G	5.250e^-5	0.483	NON_SYNONYMOUS_CODING Dfd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2788366	3L_2788366_SNP [dm3] 3L_2788366_SNP [dm6]	C	G	5.304e^-5	0.483	UTR_3_PRIME CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18503820	2R_18503820_SNP [dm3] 2R_22616315_SNP [dm6]	T	G	5.335e^-5	0.483	INTRON CG33143	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	10238767	3R_10238767_SNP [dm3] 3R_14413045_SNP [dm6]	A	T	5.375e^-5	0.483	INTRON cv-c
X	13416178	X_13416178_SNP [dm3] X_13522145_SNP [dm6]	T	C	5.383e^-5	0.483	INTRON Neto
3L	10774310	3L_10774310_SNP [dm3] 3L_10781210_SNP [dm6]	A	T	5.404e^-5	0.483	INTERGENIC
3R	13846834	3R_13846834_SNP [dm3] 3R_18021112_SNP [dm6]	C	A	5.406e^-5	0.483	UTR_3_PRIME DNaseII UPSTREAM CG7785	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9583051	2R_9583051_SNP [dm3] 2R_13695546_SNP [dm6]	G	A	5.486e^-5	0.483	INTRON fas
2L	8573222	2L_8573222_SNP [dm3] 2L_8573222_SNP [dm6]	C	T	5.493e^-5	0.483	INTRON Sema-1a
3L	18818425	3L_18818425_SNP [dm3] 3L_18825325_SNP [dm6]	G	T	5.504e^-5	0.483	INTRON Cat
2R	8007513	2R_8007513_SNP [dm3] 2R_12120008_SNP [dm6]	A	G	5.577e^-5	0.483	UPSTREAM jeb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17894142	2L_17894142_DEL [dm3] 2L_17894142_DEL [dm6]	TT	T	5.586e^-5	0.483	EXON CR43420
3R	2764090	3R_2764090_SNP [dm3] 3R_6938368_SNP [dm6]	C	T	5.588e^-5	0.483	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9208180	3L_9208180_SNP [dm3] 3L_9215080_SNP [dm6]	A	C	5.612e^-5	0.483	SYNONYMOUS_CODING CG4476
3R	17445775	3R_17445775_INS [dm3] 3R_21620053_INS [dm6]	T	TGAT	5.641e^-5	0.483	UPSTREAM InR DOWNSTREAM E2f INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3L	13323665	3L_13323665_SNP [dm3] 3L_13330565_SNP [dm6]	G	A	5.648e^-5	0.483	DOWNSTREAM CG14113 INTERGENIC
3R	2729593	3R_2729593_SNP [dm3] 3R_6903871_SNP [dm6]	T	G	5.648e^-5	0.483	INTRON Antp EXON CR43252	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11136724	2R_11136724_SNP [dm3] 2R_15249219_SNP [dm6]	A	G	5.738e^-5	0.483	UTR_5_PRIME scb	TF binding site mE1_TFBS_cad
3R	25502191	3R_25502191_SNP [dm3] 3R_29676469_SNP [dm6]	G	A	5.752e^-5	0.483	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_sens
3R	18903836	3R_18903836_SNP [dm3] 3R_23078114_SNP [dm6]	A	C	5.765e^-5	0.483	INTRON CG13830
3R	5443512	3R_5443512_SNP [dm3] 3R_9617790_SNP [dm6]	G	C	5.772e^-5	0.483	INTRON CG8312
3R	2431255	3R_2431255_SNP [dm3] 3R_6605533_SNP [dm6]	A	G	5.773e^-5	0.483	DOWNSTREAM glob2 INTERGENIC
3L	14989573	3L_14989573_SNP [dm3] 3L_14996473_SNP [dm6]	C	A	5.932e^-5	0.489	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	2733164	3R_2733164_SNP [dm3] 3R_6907442_SNP [dm6]	C	T	5.939e^-5	0.489	UTR_3_PRIME Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5287908	2R_5287908_SNP [dm3] 2R_9400403_SNP [dm6]	T	A	5.968e^-5	0.489	UPSTREAM CG33774 DOWNSTREAM wun & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	8415635	3L_8415635_SNP [dm3] 3L_8422535_SNP [dm6]	A	T	5.998e^-5	0.489	UPSTREAM CG32354 INTERGENIC
3L	8415686	3L_8415686_SNP [dm3] 3L_8422586_SNP [dm6]	T	C	5.998e^-5	0.489	UPSTREAM CG32354 INTERGENIC
3R	2757048	3R_2757048_SNP [dm3] 3R_6931326_SNP [dm6]	T	C	6.002e^-5	0.489	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3R	10574195	3R_10574195_SNP [dm3] 3R_14748473_SNP [dm6]	C	T	6.031e^-5	0.49	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	16947982	2R_16947982_SNP [dm3] 2R_21060477_SNP [dm6]	C	G	6.077e^-5	0.491	UTR_5_PRIME CG15653 UPSTREAM mRpL54 DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5491934	2L_5491934_SNP [dm3] 2L_5491934_SNP [dm6]	G	T	6.106e^-5	0.492	INTERGENIC
3L	8415659	3L_8415659_SNP [dm3] 3L_8422559_SNP [dm6]	T	C	6.253e^-5	0.494	UPSTREAM CG32354 INTERGENIC
3R	14868942	3R_14868942_SNP [dm3] 3R_19043220_SNP [dm6]	C	T	6.256e^-5	0.494	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2708136	3R_2708136_SNP [dm3] 3R_6882414_SNP [dm6]	G	C	6.288e^-5	0.494	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19992793	3R_19992793_SNP [dm3] 3R_24167071_SNP [dm6]	T	C	6.321e^-5	0.494	SYNONYMOUS_CODING Apc2 DOWNSTREAM CG5510
3R	2639009	3R_2639009_SNP [dm3] 3R_6813287_SNP [dm6]	G	T	6.330e^-5	0.494	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11136762	2R_11136762_SNP [dm3] 2R_15249257_SNP [dm6]	G	A	6.335e^-5	0.494	UTR_5_PRIME scb	TF binding site mE1_TFBS_cad
3R	13846116	3R_13846116_SNP [dm3] 3R_18020394_SNP [dm6]	A	C	6.401e^-5	0.494	SYNONYMOUS_CODING DNaseII	TF binding site mE1_TFBS_cad
2R	18503771	2R_18503771_DEL [dm3] 2R_22616266_DEL [dm6]	AGGTAATCTAA...	A	6.412e^-5	0.494	INTRON CG33143	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12451347	3L_12451347_SNP [dm3] 3L_12458247_SNP [dm6]	T	G	6.412e^-5	0.494	INTERGENIC
3R	26310273	3R_26310273_SNP [dm3] 3R_30484551_SNP [dm6]	G	C	6.414e^-5	0.494	SYNONYMOUS_CODING PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9073678	2L_9073678_SNP [dm3] 2L_9073678_SNP [dm6]	T	A	6.468e^-5	0.494	INTERGENIC
2L	6890122	2L_6890122_SNP [dm3] 2L_6890122_SNP [dm6]	G	A	6.520e^-5	0.494	INTRON Nlg2
3L	10659160	3L_10659160_SNP [dm3] 3L_10666060_SNP [dm6]	A	C	6.574e^-5	0.494	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10203161	3L_10203161_SNP [dm3] 3L_10210061_SNP [dm6]	C	A	6.579e^-5	0.494	INTERGENIC
3R	26316309	3R_26316309_SNP [dm3] 3R_30490587_SNP [dm6]	A	C	6.580e^-5	0.494	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
X	10337905	X_10337905_SNP [dm3] X_10443872_SNP [dm6]	T	C	6.603e^-5	0.494	DOWNSTREAM snoRNA:Me28S-A1705 INTRON CG32683
2L	13350538	2L_13350538_SNP [dm3] 2L_13350538_SNP [dm6]	T	G	6.644e^-5	0.494	UTR_3_PRIME CG9395
3L	8415661	3L_8415661_SNP [dm3] 3L_8422561_SNP [dm6]	A	C	6.654e^-5	0.494	UPSTREAM CG32354 INTERGENIC
3R	14869044	3R_14869044_SNP [dm3] 3R_19043322_SNP [dm6]	G	C	6.662e^-5	0.494	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2724369	3R_2724369_SNP [dm3] 3R_6898647_SNP [dm6]	G	A	6.702e^-5	0.494	INTRON Antp
3R	18903792	3R_18903792_DEL [dm3] 3R_23078070_DEL [dm6]	TTGTG	A	6.710e^-5	0.494	INTRON CG13830
3R	10240173	3R_10240173_SNP [dm3] 3R_14414451_SNP [dm6]	T	C	6.716e^-5	0.494	INTRON cv-c
3R	9866983	3R_9866983_SNP [dm3] 3R_14041261_SNP [dm6]	T	A	6.746e^-5	0.494	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14679883	3L_14679883_SNP [dm3] 3L_14686783_SNP [dm6]	G	C	6.864e^-5	0.501	DOWNSTREAM CG5048 INTRON ome
3L	15934189	3L_15934189_SNP [dm3] 3L_15941089_SNP [dm6]	C	A	6.913e^-5	0.501	INTRON Pka-C3
3L	5342049	3L_5342049_SNP [dm3] 3L_5348949_SNP [dm6]	T	A	6.944e^-5	0.501	INTRON lama
X	5928035	X_5928035_INS [dm3] X_6034002_INS [dm6]	C	CCTC	6.963e^-5	0.501	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	12594632	X_12594632_SNP [dm3] X_12700599_SNP [dm6]	G	C	6.998e^-5	0.501	INTRON Smr
3R	2665704	3R_2665704_SNP [dm3] 3R_6839982_SNP [dm6]	T	A	7.004e^-5	0.501	INTRON Scr	regulatory region REDfly_CRMs
3L	4685614	3L_4685614_SNP [dm3] 3L_4685614_SNP [dm6]	G	A	7.097e^-5	0.505	INTRON axo
3R	19167960	3R_19167960_SNP [dm3] 3R_23342238_SNP [dm6]	C	T	7.114e^-5	0.505	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	17841011	3R_17841011_SNP [dm3] 3R_22015289_SNP [dm6]	C	T	7.135e^-5	0.505	SYNONYMOUS_CODING CG6332 DOWNSTREAM Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	2718810	3R_2718810_SNP [dm3] 3R_6893088_SNP [dm6]	G	A	7.199e^-5	0.506	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9087325	3L_9087325_SNP [dm3] 3L_9094225_SNP [dm6]	T	C	7.209e^-5	0.506	INTRON CG32032
2L	14916484	2L_14916484_SNP [dm3] 2L_14916484_SNP [dm6]	T	C	7.257e^-5	0.507	INTRON CG42313
3L	10725604	3L_10725604_SNP [dm3] 3L_10732504_SNP [dm6]	A	G	7.302e^-5	0.507	INTERGENIC
2L	13350116	2L_13350116_SNP [dm3] 2L_13350116_SNP [dm6]	C	T	7.319e^-5	0.507	UTR_3_PRIME CG9395
2L	8449097	2L_8449097_SNP [dm3] 2L_8449097_SNP [dm6]	C	T	7.326e^-5	0.507	SPLICE_SITE_REGION U26 SYNONYMOUS_CODING U26 DOWNSTREAM fu12
3R	12344697	3R_12344697_SNP [dm3] 3R_16518975_SNP [dm6]	G	A	7.409e^-5	0.509	INTRON CG42342	TF binding site mE1_TFBS_HSA
3R	26466480	3R_26466480_SNP [dm3] 3R_30640758_SNP [dm6]	A	G	7.480e^-5	0.509	INTERGENIC
2L	4246545	2L_4246545_SNP [dm3] 2L_4246545_SNP [dm6]	T	C	7.501e^-5	0.509	EXON CR44059
2L	3320462	2L_3320462_SNP [dm3] 2L_3320462_SNP [dm6]	G	A	7.510e^-5	0.509	UPSTREAM CG3326 INTRON CG8837
3L	6093893	3L_6093893_SNP [dm3] 3L_6100793_SNP [dm6]	G	T	7.530e^-5	0.509	INTRON Ets65A
3R	2804012	3R_2804012_SNP [dm3] 3R_6978290_SNP [dm6]	C	T	7.574e^-5	0.509	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	20287914	3R_20287914_SNP [dm3] 3R_24462192_SNP [dm6]	C	G	7.596e^-5	0.509	INTERGENIC
3L	18818408	3L_18818408_SNP [dm3] 3L_18825308_SNP [dm6]	T	C	7.616e^-5	0.509	INTRON Cat
3L	1868222	3L_1868222_SNP [dm3] 3L_1868222_SNP [dm6]	T	G	7.623e^-5	0.509	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
2R	4961415	2R_4961415_SNP [dm3] 2R_9073910_SNP [dm6]	T	C	7.649e^-5	0.509	INTRON ana
3R	2674924	3R_2674924_SNP [dm3] 3R_6849202_SNP [dm6]	G	T	7.662e^-5	0.509	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26309955	3R_26309955_SNP [dm3] 3R_30484233_SNP [dm6]	T	C	7.673e^-5	0.509	SYNONYMOUS_CODING PH4alphaEFB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2731550	3R_2731550_SNP [dm3] 3R_6905828_SNP [dm6]	T	G	7.706e^-5	0.509	INTRON Antp
3R	10240192	3R_10240192_SNP [dm3] 3R_14414470_SNP [dm6]	G	C	7.816e^-5	0.51	INTRON cv-c
3L	10948540	3L_10948540_SNP [dm3] 3L_10955440_SNP [dm6]	A	T	7.823e^-5	0.51	INTERGENIC
3R	26310367	3R_26310367_SNP [dm3] 3R_30484645_SNP [dm6]	A	C	7.835e^-5	0.51	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9043649	2L_9043649_SNP [dm3] 2L_9043649_SNP [dm6]	G	C	7.859e^-5	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2677622	3R_2677622_INS [dm3] 3R_6851900_INS [dm6]	T	TC	7.916e^-5	0.51	INTERGENIC	regulatory region REDfly_CRMs
3R	20520899	3R_20520899_SNP [dm3] 3R_24695177_SNP [dm6]	A	T	7.959e^-5	0.51	INTRON slo
2R	12821158	2R_12821158_SNP [dm3] 2R_16933653_SNP [dm6]	T	G	7.995e^-5	0.51	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
2L	6276995	2L_6276995_SNP [dm3] 2L_6276995_SNP [dm6]	T	C	8.116e^-5	0.51	INTRON Ddr
3R	9866985	3R_9866985_SNP [dm3] 3R_14041263_SNP [dm6]	C	G	8.136e^-5	0.51	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19131171	3L_19131171_SNP [dm3] 3L_19138071_SNP [dm6]	T	A	8.155e^-5	0.51	INTRON CG14082
3R	13845767	3R_13845767_DEL [dm3] 3R_18020045_DEL [dm6]	TTT	A	8.160e^-5	0.51	INTRON DNaseII	TF binding site mE1_TFBS_cad
3L	17687735	3L_17687735_SNP [dm3] 3L_17694635_SNP [dm6]	T	C	8.180e^-5	0.51	INTRON Ccn
2R	4527150	2R_4527150_SNP [dm3] 2R_8639645_SNP [dm6]	G	T	8.192e^-5	0.51	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3L	14989502	3L_14989502_SNP [dm3] 3L_14996402_SNP [dm6]	A	G	8.204e^-5	0.51	SYNONYMOUS_CODING Zip71B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	15214283	X_15214283_SNP [dm3] X_15320250_SNP [dm6]	C	G	8.208e^-5	0.51	UPSTREAM Top1 & 1 other INTRON Top1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17553824	3R_17553824_SNP [dm3] 3R_21728102_SNP [dm6]	T	G	8.220e^-5	0.51	INTERGENIC
3R	11573985	3R_11573985_SNP [dm3] 3R_15748263_SNP [dm6]	T	A	8.250e^-5	0.51	INTERGENIC
2R	17553232	2R_17553232_SNP [dm3] 2R_21665727_SNP [dm6]	G	A	8.283e^-5	0.51	UTR_3_PRIME CG42362 & 1 other UPSTREAM CG42364 & 1 other
3R	26321410	3R_26321410_SNP [dm3] 3R_30495688_SNP [dm6]	C	A	8.321e^-5	0.51	INTRON PH4alphaMP	TF binding site mE1_TFBS_inv
2L	9495926	2L_9495926_DEL [dm3] 2L_9495926_DEL [dm6]	AAA	A	8.327e^-5	0.51	UTR_5_PRIME CG33298 INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	26310349	3R_26310349_SNP [dm3] 3R_30484627_SNP [dm6]	A	G	8.346e^-5	0.51	INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2724774	3R_2724774_SNP [dm3] 3R_6899052_SNP [dm6]	A	T	8.351e^-5	0.51	INTRON Antp
3L	5303034	3L_5303034_SNP [dm3] 3L_5309934_SNP [dm6]	A	G	8.457e^-5	0.51	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3363767	2L_3363767_SNP [dm3] 2L_3363767_SNP [dm6]	T	G	8.521e^-5	0.51	SPLICE_SITE_REGION CG34394 INTRON CG34394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14989563	3L_14989563_SNP [dm3] 3L_14996463_SNP [dm6]	C	T	8.541e^-5	0.51	INTRON Zip71B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8822631	3L_8822631_SNP [dm3] 3L_8829531_SNP [dm6]	G	C	8.546e^-5	0.51	INTRON dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	14900966	2R_14900966_SNP [dm3] 2R_19013461_SNP [dm6]	G	T	8.557e^-5	0.51	INTERGENIC
3R	2723983	3R_2723983_SNP [dm3] 3R_6898261_SNP [dm6]	C	A	8.576e^-5	0.51	UTR_3_PRIME Antp
3R	2372295	3R_2372295_SNP [dm3] 3R_6546573_SNP [dm6]	G	A	8.576e^-5	0.51	INTRON dpr11
2L	10088508	2L_10088508_SNP [dm3] 2L_10088508_SNP [dm6]	C	A	8.592e^-5	0.51	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10661171	3L_10661171_SNP [dm3] 3L_10668071_SNP [dm6]	C	T	8.605e^-5	0.51	INTRON simj	TF binding site BDTNP1_TFBS_dl
X	9213347	X_9213347_SNP [dm3] X_9319314_SNP [dm6]	T	C	8.684e^-5	0.51	UPSTREAM c12.2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	14094207	3R_14094207_SNP [dm3] 3R_18268485_SNP [dm6]	G	A	8.707e^-5	0.51	INTRON CG18599
3R	10238271	3R_10238271_SNP [dm3] 3R_14412549_SNP [dm6]	G	A	8.708e^-5	0.51	INTRON cv-c
3L	9113072	3L_9113072_SNP [dm3] 3L_9119972_SNP [dm6]	A	G	8.719e^-5	0.51	INTRON bol
3L	13245725	3L_13245725_SNP [dm3] 3L_13252625_SNP [dm6]	C	T	8.736e^-5	0.51	INTRON caps
3R	2472499	3R_2472499_SNP [dm3] 3R_6646777_SNP [dm6]	G	T	8.739e^-5	0.51	UPSTREAM Taf1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5751084	3L_5751084_SNP [dm3] 3L_5757984_SNP [dm6]	C	G	8.755e^-5	0.51	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18782561	3R_18782561_SNP [dm3] 3R_22956839_SNP [dm6]	T	A	8.837e^-5	0.513	INTRON klg
3R	2399304	3R_2399304_SNP [dm3] 3R_6573582_SNP [dm6]	C	A	8.893e^-5	0.513	INTRON dpr11
3L	14989507	3L_14989507_SNP [dm3] 3L_14996407_SNP [dm6]	T	C	8.910e^-5	0.513	NON_SYNONYMOUS_CODING Zip71B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	2672852	3R_2672852_SNP [dm3] 3R_6847130_SNP [dm6]	G	A	8.971e^-5	0.513	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2720026	3R_2720026_SNP [dm3] 3R_6894304_SNP [dm6]	C	G	8.982e^-5	0.513	UPSTREAM CR45559 DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2742908	3R_2742908_SNP [dm3] 3R_6917186_SNP [dm6]	G	A	8.982e^-5	0.513	INTRON Antp	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	19133810	3L_19133810_SNP [dm3] 3L_19140710_SNP [dm6]	T	C	8.990e^-5	0.513	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
3R	2680367	3R_2680367_SNP [dm3] 3R_6854645_SNP [dm6]	T	A	9.082e^-5	0.515	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	8007195	2R_8007195_SNP [dm3] 2R_12119690_SNP [dm6]	A	T	9.095e^-5	0.515	UPSTREAM jeb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21946825	X_21946825_INS [dm3] X_22544989_INS [dm6]	G	GG	9.187e^-5	0.515	UPSTREAM CG17599 INTERGENIC
3R	2742352	3R_2742352_SNP [dm3] 3R_6916630_SNP [dm6]	C	T	9.224e^-5	0.515	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	15243626	3R_15243626_SNP [dm3] 3R_19417904_SNP [dm6]	T	C	9.238e^-5	0.515	INTRON CG31221
2R	12265987	2R_12265987_SNP [dm3] 2R_16378482_SNP [dm6]	A	G	9.257e^-5	0.515	UPSTREAM CR45316 DOWNSTREAM CR45317 INTERGENIC
3R	13853047	3R_13853047_SNP [dm3] 3R_18027325_SNP [dm6]	C	A	9.320e^-5	0.515	INTERGENIC
X	8935452	X_8935452_SNP [dm3] X_9041419_SNP [dm6]	G	T	9.370e^-5	0.515	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26982703	3R_26982703_SNP [dm3] 3R_31156981_SNP [dm6]	G	T	9.448e^-5	0.515	INTRON Gycbeta100B
2L	6276997	2L_6276997_SNP [dm3] 2L_6276997_SNP [dm6]	A	C	9.456e^-5	0.515	INTRON Ddr
2L	6009428	2L_6009428_SNP [dm3] 2L_6009428_SNP [dm6]	G	A	9.474e^-5	0.515	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo
3R	22229561	3R_22229561_SNP [dm3] 3R_26403839_SNP [dm6]	T	A	9.476e^-5	0.515	UPSTREAM ppk15 INTERGENIC
3R	2375833	3R_2375833_SNP [dm3] 3R_6550111_SNP [dm6]	T	C	9.502e^-5	0.515	DOWNSTREAM Pif2 INTRON dpr11
2L	5648607	2L_5648607_SNP [dm3] 2L_5648607_SNP [dm6]	A	G	9.508e^-5	0.515	INTRON CG31646
3L	17689588	3L_17689588_SNP [dm3] 3L_17696488_SNP [dm6]	C	T	9.518e^-5	0.515	INTRON Ccn
X	21896442	X_21896442_SNP [dm3] X_22494606_SNP [dm6]	A	G	9.544e^-5	0.515	INTRON l_1_G0196	transposable element FlyBase
3L	8415712	3L_8415712_SNP [dm3] 3L_8422612_SNP [dm6]	T	C	9.552e^-5	0.515	UPSTREAM CG32354 INTERGENIC
2R	9582958	2R_9582958_SNP [dm3] 2R_13695453_SNP [dm6]	A	T	9.569e^-5	0.515	INTRON fas
3R	10240185	3R_10240185_SNP [dm3] 3R_14414463_SNP [dm6]	G	T	9.604e^-5	0.515	INTRON cv-c
3L	9245889	3L_9245889_SNP [dm3] 3L_9252789_SNP [dm6]	G	A	9.664e^-5	0.515	INTRON GluRIB
2L	5505374	2L_5505374_SNP [dm3] 2L_5505374_SNP [dm6]	C	T	9.670e^-5	0.515	INTERGENIC
X	4128523	X_4128523_SNP [dm3] X_4234490_SNP [dm6]	T	C	9.686e^-5	0.515	INTERGENIC
3R	2721755	3R_2721755_SNP [dm3] 3R_6896033_SNP [dm6]	C	T	9.706e^-5	0.515	DOWNSTREAM Antp INTRON CR44932
X	8874815	X_8874815_SNP [dm3] X_8980782_SNP [dm6]	A	T	9.723e^-5	0.515	INTRON rdgA & 1 other
3R	6778371	3R_6778371_SNP [dm3] 3R_10952649_SNP [dm6]	G	A	9.723e^-5	0.515	DOWNSTREAM Tengl4 INTERGENIC
2L	9634016	2L_9634016_SNP [dm3] 2L_9634016_SNP [dm6]	A	C	9.779e^-5	0.515	UPSTREAM Apoltp INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	2731926	3R_2731926_SNP [dm3] 3R_6906204_SNP [dm6]	T	C	9.781e^-5	0.515	DOWNSTREAM Antp INTRON Antp
2R	8006978	2R_8006978_SNP [dm3] 2R_12119473_SNP [dm6]	T	C	9.813e^-5	0.516	UPSTREAM jeb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20751890	X_20751890_SNP [dm3] X_20880863_SNP [dm6]	A	G	9.878e^-5	0.517	DOWNSTREAM I-3 INTRON shakB
2R	8839221	2R_8839221_DEL [dm3] 2R_12951716_DEL [dm6]	CTTGCTGTACGGTTTTGCG...	T	9.915e^-5	0.517	INTRON CG44251 & 1 other
3R	26309938	3R_26309938_SNP [dm3] 3R_30484216_SNP [dm6]	C	T	9.931e^-5	0.517	SYNONYMOUS_CODING PH4alphaEFB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7800510	X_7800510_INS [dm3] X_7906477_INS [dm6]	G	GTTG	9.947e^-5	0.517	INTRON dpr14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7708541	3L_7708541_SNP [dm3] 3L_7715441_SNP [dm6]	C	A	1.012e^-4	0.523	INTRON CG32373 & 1 other
3L	3801609	3L_3801609_DEL [dm3] 3L_3801609_DEL [dm6]	TG	T	1.016e^-4	0.523	UPSTREAM CG32264 INTRON CG32264
X	8874813	X_8874813_SNP [dm3] X_8980780_SNP [dm6]	G	A	1.016e^-4	0.523	INTRON rdgA & 1 other
2R	11385434	2R_11385434_SNP [dm3] 2R_15497929_SNP [dm6]	T	A	1.018e^-4	0.523	UPSTREAM CG12964 INTERGENIC
3R	2680331	3R_2680331_SNP [dm3] 3R_6854609_SNP [dm6]	A	T	1.026e^-4	0.524	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	3924662	2L_3924662_SNP [dm3] 2L_3924662_SNP [dm6]	T	A	1.028e^-4	0.524	INTRON fred
3R	2618038	3R_2618038_SNP [dm3] 3R_6792316_SNP [dm6]	C	T	1.031e^-4	0.524	UTR_5_PRIME Dfd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	2680426	3R_2680426_SNP [dm3] 3R_6854704_SNP [dm6]	T	C	1.035e^-4	0.524	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	8874819	X_8874819_SNP [dm3] X_8980786_SNP [dm6]	C	A	1.035e^-4	0.524	INTRON rdgA & 1 other
3R	2605181	3R_2605181_SNP [dm3] 3R_6779459_SNP [dm6]	C	T	1.038e^-4	0.524	UPSTREAM CR43435 EXON CR42721
3L	9562475	3L_9562475_SNP [dm3] 3L_9569375_SNP [dm6]	C	A	1.044e^-4	0.524	INTRON CG42673
X	7800471	X_7800471_SNP [dm3] X_7906438_SNP [dm6]	C	T	1.045e^-4	0.524	INTRON dpr14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	19357380	X_19357380_SNP [dm3] X_19463347_SNP [dm6]	A	T	1.046e^-4	0.524	INTRON kek5
3L	3801519	3L_3801519_SNP [dm3] 3L_3801519_SNP [dm6]	C	T	1.048e^-4	0.524	UPSTREAM CG32264 INTRON CG32264
3L	16962708	3L_16962708_SNP [dm3] 3L_16969608_SNP [dm6]	T	C	1.056e^-4	0.524	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	16962709	3L_16962709_SNP [dm3] 3L_16969609_SNP [dm6]	G	C	1.056e^-4	0.524	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3R	2653868	3R_2653868_SNP [dm3] 3R_6828146_SNP [dm6]	T	A	1.060e^-4	0.524	INTRON Scr	regulatory region REDfly_CRMs
2R	6156188	2R_6156188_SNP [dm3] 2R_10268683_SNP [dm6]	G	T	1.061e^-4	0.524	SYNONYMOUS_CODING CG12910 UPSTREAM CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21697384	3R_21697384_SNP [dm3] 3R_25871662_SNP [dm6]	A	T	1.066e^-4	0.524	UTR_3_PRIME CG5890
2L	3919133	2L_3919133_SNP [dm3] 2L_3919133_SNP [dm6]	A	G	1.069e^-4	0.524	SYNONYMOUS_CODING fred
3L	5303036	3L_5303036_SNP [dm3] 3L_5309936_SNP [dm6]	A	G	1.070e^-4	0.524	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8587550	3L_8587550_SNP [dm3] 3L_8594450_SNP [dm6]	A	G	1.071e^-4	0.524	NON_SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078
3R	2742484	3R_2742484_SNP [dm3] 3R_6916762_SNP [dm6]	T	G	1.075e^-4	0.524	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	2469667	3R_2469667_SNP [dm3] 3R_6643945_SNP [dm6]	A	G	1.077e^-4	0.524	SYNONYMOUS_CODING CG1315 DOWNSTREAM CG31286	TF binding site mE1_TFBS_HSA
X	17538521	X_17538521_SNP [dm3] X_17644488_SNP [dm6]	A	T	1.078e^-4	0.524	INTRON RhoGAPp190
2R	8007385	2R_8007385_SNP [dm3] 2R_12119880_SNP [dm6]	G	T	1.084e^-4	0.524	UPSTREAM jeb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10378233	3L_10378233_SNP [dm3] 3L_10385133_SNP [dm6]	A	G	1.094e^-4	0.524	INTERGENIC
3R	2371535	3R_2371535_SNP [dm3] 3R_6545813_SNP [dm6]	A	G	1.096e^-4	0.524	SYNONYMOUS_CODING dpr11	TF binding site BDTNP1_TFBS_slp1
2R	8872686	2R_8872686_DEL [dm3] 2R_12985181_DEL [dm6]	AC	A	1.096e^-4	0.524	UPSTREAM CR44339 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	26329275	3R_26329275_SNP [dm3] 3R_30503553_SNP [dm6]	A	G	1.103e^-4	0.524	UPSTREAM CG31371 DOWNSTREAM PH4alphaSG1 INTERGENIC
3R	2659203	3R_2659203_SNP [dm3] 3R_6833481_SNP [dm6]	C	T	1.109e^-4	0.524	INTRON Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	15749990	3R_15749990_SNP [dm3] 3R_19924268_SNP [dm6]	C	T	1.110e^-4	0.524	INTRON CG4462
3R	14869299	3R_14869299_SNP [dm3] 3R_19043577_SNP [dm6]	T	G	1.110e^-4	0.524	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26324434	3R_26324434_SNP [dm3] 3R_30498712_SNP [dm6]	T	G	1.112e^-4	0.524	INTRON PH4alphaNE1	TF binding site mE1_TFBS_cad
3R	24729125	3R_24729125_SNP [dm3] 3R_28903403_SNP [dm6]	G	A	1.113e^-4	0.524	UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10768449	3L_10768449_SNP [dm3] 3L_10775349_SNP [dm6]	A	G	1.119e^-4	0.524	INTERGENIC
3R	26078561	3R_26078561_SNP [dm3] 3R_30252839_SNP [dm6]	A	G	1.131e^-4	0.524	UPSTREAM CG18404 DOWNSTREAM CG9682 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2707142	3R_2707142_SNP [dm3] 3R_6881420_SNP [dm6]	T	G	1.132e^-4	0.524	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2677231	3R_2677231_SNP [dm3] 3R_6851509_SNP [dm6]	C	A	1.139e^-4	0.524	INTERGENIC	regulatory region REDfly_CRMs
3L	16962698	3L_16962698_SNP [dm3] 3L_16969598_SNP [dm6]	C	A	1.140e^-4	0.524	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
2L	4246648	2L_4246648_SNP [dm3] 2L_4246648_SNP [dm6]	C	T	1.140e^-4	0.524	EXON CR44059
2R	6826896	2R_6826896_SNP [dm3] 2R_10939391_SNP [dm6]	C	T	1.143e^-4	0.524	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C	TF binding site mE1_TFBS_cad
3R	20005499	3R_20005499_SNP [dm3] 3R_24179777_SNP [dm6]	T	C	1.145e^-4	0.524	INTRON CG13606
X	17734884	X_17734884_SNP [dm3] X_17840851_SNP [dm6]	G	A	1.148e^-4	0.524	SYNONYMOUS_CODING CG6398	TF binding site mE1_TFBS_sens
X	9213315	X_9213315_SNP [dm3] X_9319282_SNP [dm6]	T	C	1.149e^-4	0.524	UPSTREAM c12.2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	16728355	3R_16728355_SNP [dm3] 3R_20902633_SNP [dm6]	T	A	1.153e^-4	0.524	INTRON CG5621	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14989772	3L_14989772_SNP [dm3] 3L_14996672_SNP [dm6]	C	T	1.156e^-4	0.524	SYNONYMOUS_CODING Zip71B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14680736	3L_14680736_SNP [dm3] 3L_14687636_SNP [dm6]	T	C	1.159e^-4	0.524	INTRON ome
3L	22084716	3L_22084716_SNP [dm3] 3L_22091616_SNP [dm6]	T	A	1.162e^-4	0.524	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	21867550	X_21867550_SNP [dm3] X_22465714_SNP [dm6]	T	A	1.169e^-4	0.524	UPSTREAM CG14619 INTRON CG14619
3R	2807832	3R_2807832_INS [dm3] 3R_6982110_INS [dm6]	G	GCGG	1.169e^-4	0.524	INTRON Antp
3L	9114995	3L_9114995_SNP [dm3] 3L_9121895_SNP [dm6]	G	A	1.171e^-4	0.524	INTRON bol
3L	10947537	3L_10947537_SNP [dm3] 3L_10954437_SNP [dm6]	T	C	1.171e^-4	0.524	INTERGENIC
3R	27194107	3R_27194107_SNP [dm3] 3R_31368385_SNP [dm6]	C	A	1.171e^-4	0.524	INTRON CG34347
3L	18818444	3L_18818444_SNP [dm3] 3L_18825344_SNP [dm6]	C	T	1.172e^-4	0.524	INTRON Cat
2R	2080139	2R_2080139_SNP [dm3] 2R_6192634_SNP [dm6]	T	C	1.179e^-4	0.524	INTRON Ptr	TF binding site BDTNP1_TFBS_dl
3R	10574196	3R_10574196_SNP [dm3] 3R_14748474_SNP [dm6]	T	A	1.182e^-4	0.524	INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	6297829	X_6297829_SNP [dm3] X_6403796_SNP [dm6]	A	G	1.185e^-4	0.524	INTERGENIC
3R	26966488	3R_26966488_SNP [dm3] 3R_31140766_SNP [dm6]	G	T	1.192e^-4	0.524	INTRON Gycbeta100B
3L	10774272	3L_10774272_INS [dm3] 3L_10781172_INS [dm6]	A	ACAACTTTGG	1.193e^-4	0.524	INTERGENIC
3R	15749997	3R_15749997_SNP [dm3] 3R_19924275_SNP [dm6]	A	C	1.193e^-4	0.524	INTRON CG4462
X	5365642	X_5365642_SNP [dm3] X_5471609_SNP [dm6]	C	G	1.194e^-4	0.524	INTRON SPR
2L	16508146	2L_16508146_SNP [dm3] 2L_16508146_SNP [dm6]	A	T	1.199e^-4	0.524	UTR_3_PRIME CG5953 DOWNSTREAM Tpr2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2747058	3L_2747058_SNP [dm3] 3L_2747058_SNP [dm6]	A	G	1.200e^-4	0.524	INTRON Mrtf
3R	22229562	3R_22229562_SNP [dm3] 3R_26403840_SNP [dm6]	T	A	1.205e^-4	0.524	UPSTREAM ppk15 INTERGENIC
3R	2720642	3R_2720642_SNP [dm3] 3R_6894920_SNP [dm6]	T	C	1.209e^-4	0.524	DOWNSTREAM CR44932 INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	4687712	3L_4687712_SNP [dm3] 3L_4687712_SNP [dm6]	A	T	1.210e^-4	0.524	UTR_3_PRIME CG7514 UPSTREAM axo	TF binding site mE1_TFBS_cad
3L	10893620	3L_10893620_SNP [dm3] 3L_10900520_SNP [dm6]	A	G	1.211e^-4	0.524	INTERGENIC
2R	14212516	2R_14212516_INS [dm3] 2R_18325011_INS [dm6]	G	GC	1.214e^-4	0.524	INTRON sbb
3R	2797739	3R_2797739_SNP [dm3] 3R_6972017_SNP [dm6]	G	A	1.218e^-4	0.524	INTRON Antp
3L	18825506	3L_18825506_SNP [dm3] 3L_18832406_SNP [dm6]	T	C	1.221e^-4	0.524	INTRON Indy
2R	13663796	2R_13663796_SNP [dm3] 2R_17776291_SNP [dm6]	A	C	1.224e^-4	0.524	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad
3L	2807833	3L_2807833_SNP [dm3] 3L_2807833_SNP [dm6]	C	T	1.228e^-4	0.524	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	14673015	3R_14673015_SNP [dm3] 3R_18847293_SNP [dm6]	A	G	1.230e^-4	0.524	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8874811	X_8874811_SNP [dm3] X_8980778_SNP [dm6]	G	A	1.238e^-4	0.524	INTRON rdgA & 1 other
3L	10758054	3L_10758054_SNP [dm3] 3L_10764954_SNP [dm6]	T	C	1.238e^-4	0.524	INTERGENIC
3R	16711430	3R_16711430_SNP [dm3] 3R_20885708_SNP [dm6]	C	G	1.240e^-4	0.524	INTERGENIC
3R	5679557	3R_5679557_SNP [dm3] 3R_9853835_SNP [dm6]	G	A	1.241e^-4	0.524	INTRON Teh1
3L	19133794	3L_19133794_SNP [dm3] 3L_19140694_SNP [dm6]	C	G	1.247e^-4	0.524	DOWNSTREAM fz2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
X	12261431	X_12261431_DEL [dm3] X_12367398_DEL [dm6]	CGGTTCGGTTCAGTTT...	C	1.248e^-4	0.524	INTERGENIC
X	21946743	X_21946743_SNP [dm3] X_22544907_SNP [dm6]	C	A	1.250e^-4	0.524	UPSTREAM CG17599 INTERGENIC
2L	6737526	2L_6737526_SNP [dm3] 2L_6737526_SNP [dm6]	G	T	1.255e^-4	0.524	SYNONYMOUS_CODING TTLL3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10683478	3L_10683478_SNP [dm3] 3L_10690378_SNP [dm6]	T	A	1.259e^-4	0.524	UTR_3_PRIME simj UPSTREAM CG11811
X	10068473	X_10068473_SNP [dm3] X_10174440_SNP [dm6]	T	A	1.260e^-4	0.524	INTRON CG43902 & 1 other
3R	26560248	3R_26560248_SNP [dm3] 3R_30734526_SNP [dm6]	T	A	1.260e^-4	0.524	INTERGENIC
3R	25094455	3R_25094455_SNP [dm3] 3R_29268733_SNP [dm6]	G	A	1.261e^-4	0.524	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4733628	2L_4733628_SNP [dm3] 2L_4733628_SNP [dm6]	T	C	1.273e^-4	0.524	NON_SYNONYMOUS_CODING CG15631 DOWNSTREAM CG15630	TF binding site mE1_TFBS_sens
3R	14878712	3R_14878712_SNP [dm3] 3R_19052990_SNP [dm6]	A	G	1.283e^-4	0.524	INTRON cdi
2L	10048253	2L_10048253_SNP [dm3] 2L_10048253_SNP [dm6]	A	G	1.284e^-4	0.524	INTERGENIC
3R	11932597	3R_11932597_SNP [dm3] 3R_16106875_SNP [dm6]	C	T	1.285e^-4	0.524	INTERGENIC
3L	19099406	3L_19099406_SNP [dm3] 3L_19106306_SNP [dm6]	G	A	1.285e^-4	0.524	UTR_3_PRIME CG14082 DOWNSTREAM CG14082
3R	2697945	3R_2697945_SNP [dm3] 3R_6872223_SNP [dm6]	G	C	1.288e^-4	0.524	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	2708518	3R_2708518_SNP [dm3] 3R_6882796_SNP [dm6]	G	C	1.290e^-4	0.524	INTRON CR44931	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	19123066	3L_19123066_SNP [dm3] 3L_19129966_SNP [dm6]	G	T	1.291e^-4	0.524	UPSTREAM Spn75F INTRON CG14082
3L	22847354	3L_22847354_SNP [dm3] 3L_22854254_SNP [dm6]	G	A	1.296e^-4	0.524	UPSTREAM CG32462 DOWNSTREAM CG32459 & 1 other EXON CR43426	transposable element FlyBase
2L	1624080	2L_1624080_SNP [dm3] 2L_1624080_SNP [dm6]	T	A	1.305e^-4	0.524	UPSTREAM CR44603 EXON CR44603
3L	13041767	3L_13041767_SNP [dm3] 3L_13048667_SNP [dm6]	G	A	1.307e^-4	0.524	UTR_3_PRIME CG11279 DOWNSTREAM CG11279	TF binding site BDTNP1_TFBS_dl
3L	5347527	3L_5347527_SNP [dm3] 3L_5354427_SNP [dm6]	T	G	1.312e^-4	0.524	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	22229624	3R_22229624_SNP [dm3] 3R_26403902_SNP [dm6]	G	A	1.312e^-4	0.524	UPSTREAM ppk15 INTERGENIC
3L	14069565	3L_14069565_SNP [dm3] 3L_14076465_SNP [dm6]	G	A	1.313e^-4	0.524	UPSTREAM btl DOWNSTREAM Pex1 INTRON btl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14094322	3R_14094322_SNP [dm3] 3R_18268600_SNP [dm6]	A	T	1.316e^-4	0.524	INTRON CG18599
3L	22084719	3L_22084719_SNP [dm3] 3L_22091619_SNP [dm6]	T	G	1.317e^-4	0.524	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	7808282	3L_7808282_SNP [dm3] 3L_7815182_SNP [dm6]	T	A	1.323e^-4	0.524	UTR_3_PRIME Pdp1
3L	18594934	3L_18594934_SNP [dm3] 3L_18601834_SNP [dm6]	T	A	1.323e^-4	0.524	INTRON CG13380 & 1 other
2L	16668429	2L_16668429_SNP [dm3] 2L_16668429_SNP [dm6]	C	T	1.324e^-4	0.524	SPLICE_SITE_REGION Trpgamma INTRON Trpgamma
3L	2366157	3L_2366157_SNP [dm3] 3L_2366157_SNP [dm6]	C	A	1.328e^-4	0.524	INTERGENIC
2L	3745016	2L_3745016_SNP [dm3] 2L_3745016_SNP [dm6]	T	C	1.329e^-4	0.524	UPSTREAM CG10019 INTRON CG10019
X	16401601	X_16401601_INS [dm3] X_16507568_INS [dm6]	G	GA	1.329e^-4	0.524	INTRON para
2L	10048203	2L_10048203_SNP [dm3] 2L_10048203_SNP [dm6]	A	G	1.333e^-4	0.524	INTERGENIC
3R	2668480	3R_2668480_SNP [dm3] 3R_6842758_SNP [dm6]	T	G	1.340e^-4	0.524	INTRON Scr	regulatory region FlyBase REDfly_CRMs
3L	21868544	3L_21868544_SNP [dm3] 3L_21875444_SNP [dm6]	C	A	1.341e^-4	0.524	INTRON mub
3R	12599759	3R_12599759_INS [dm3] 3R_16774037_INS [dm6]	A	AT	1.344e^-4	0.524	UPSTREAM bxd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19158032	2R_19158032_SNP [dm3] 2R_23270509_SNP [dm6]	T	C	1.348e^-4	0.524	START_LOST CG13540 DOWNSTREAM ord	TF binding site BDTNP1_TFBS_twi
3L	5382323	3L_5382323_SNP [dm3] 3L_5389223_SNP [dm6]	A	T	1.353e^-4	0.524	INTERGENIC
3R	13750395	3R_13750395_SNP [dm3] 3R_17924673_SNP [dm6]	G	C	1.354e^-4	0.524	INTRON cpo
3R	13583126	3R_13583126_SNP [dm3] 3R_17757404_SNP [dm6]	C	G	1.356e^-4	0.524	NON_SYNONYMOUS_CODING TyrR	TF binding site mE1_TFBS_chinmo
3R	2677705	3R_2677705_SNP [dm3] 3R_6851983_SNP [dm6]	A	G	1.366e^-4	0.524	INTERGENIC	regulatory region REDfly_CRMs
3R	3438089	3R_3438089_SNP [dm3] 3R_7612367_SNP [dm6]	T	C	1.366e^-4	0.524	INTRON CG34127
3L	11022589	3L_11022589_SNP [dm3] 3L_11029489_SNP [dm6]	C	T	1.367e^-4	0.524	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	7800466	X_7800466_SNP [dm3] X_7906433_SNP [dm6]	A	G	1.370e^-4	0.524	SPLICE_SITE_REGION dpr14 INTRON dpr14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3092397	X_3092397_SNP [dm3] X_3198364_SNP [dm6]	C	G	1.372e^-4	0.524	INTRON dnc
3R	2783041	3R_2783041_SNP [dm3] 3R_6957319_SNP [dm6]	G	T	1.377e^-4	0.524	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2782466	3R_2782466_INS [dm3] 3R_6956744_INS [dm6]	T	TGTACGT	1.380e^-4	0.524	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	7879020	3R_7879020_SNP [dm3] 3R_12053298_SNP [dm6]	G	T	1.382e^-4	0.524	INTERGENIC
X	21899834	X_21899834_SNP [dm3] X_22497998_SNP [dm6]	C	T	1.382e^-4	0.524	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10469945	2R_10469945_SNP [dm3] 2R_14582440_SNP [dm6]	C	A	1.384e^-4	0.524	INTRON ttv
3R	20520894	3R_20520894_SNP [dm3] 3R_24695172_SNP [dm6]	G	A	1.386e^-4	0.524	INTRON slo
2R	12055430	2R_12055430_SNP [dm3] 2R_16167925_SNP [dm6]	T	C	1.389e^-4	0.524	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19791222	3L_19791222_SNP [dm3] 3L_19798122_SNP [dm6]	C	A	1.389e^-4	0.524	DOWNSTREAM CG14102 & 1 other INTRON HLH106	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	2742517	3R_2742517_SNP [dm3] 3R_6916795_SNP [dm6]	C	A	1.393e^-4	0.524	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5936038	3L_5936038_INS [dm3] 3L_5942938_INS [dm6]	C	CCCCTGCAA	1.398e^-4	0.524	INTRON CG33993
3L	12991338	3L_12991338_SNP [dm3] 3L_12998238_SNP [dm6]	C	T	1.401e^-4	0.524	DOWNSTREAM CG11262 INTERGENIC
2R	11471897	2R_11471897_SNP [dm3] 2R_15584392_SNP [dm6]	T	G	1.403e^-4	0.524	INTERGENIC
2R	8837293	2R_8837293_SNP [dm3] 2R_12949788_SNP [dm6]	A	C	1.404e^-4	0.524	SYNONYMOUS_CODING CG44251 DOWNSTREAM CG44250	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9213384	X_9213384_SNP [dm3] X_9319351_SNP [dm6]	T	C	1.405e^-4	0.524	UPSTREAM c12.2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	5377955	3R_5377955_SNP [dm3] 3R_9552233_SNP [dm6]	G	T	1.405e^-4	0.524	UPSTREAM mura & 1 other INTRON RnpS1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2754890	3R_2754890_SNP [dm3] 3R_6929168_SNP [dm6]	G	A	1.407e^-4	0.524	INTRON Antp
3L	2990521	3L_2990521_SNP [dm3] 3L_2990521_SNP [dm6]	C	A	1.409e^-4	0.524	INTERGENIC
X	20461186	X_20461186_SNP [dm3] X_20590159_SNP [dm6]	T	C	1.410e^-4	0.524	DOWNSTREAM RunxA INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	4685943	3L_4685943_DEL [dm3] 3L_4685943_DEL [dm6]	AACATTGAG	A	1.411e^-4	0.524	INTRON axo
2R	17541915	2R_17541915_SNP [dm3] 2R_21654410_SNP [dm6]	C	T	1.416e^-4	0.524	INTRON CG10082	TF binding site mE1_TFBS_cad
3R	24217401	3R_24217401_SNP [dm3] 3R_28391679_SNP [dm6]	C	G	1.418e^-4	0.524	INTERGENIC
3L	8738426	3L_8738426_SNP [dm3] 3L_8745326_SNP [dm6]	G	T	1.418e^-4	0.524	UPSTREAM Prm INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	5144182	3R_5144182_MNP [dm3] 3R_9318460_MNP [dm6]	TTCGC	CATAA	1.419e^-4	0.524	INTRON CG8861
3R	2742353	3R_2742353_SNP [dm3] 3R_6916631_SNP [dm6]	A	C	1.428e^-4	0.524	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	8169613	3L_8169613_SNP [dm3] 3L_8176513_SNP [dm6]	G	T	1.428e^-4	0.524	SYNONYMOUS_CODING Nmt UPSTREAM RecQ4	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11106850	3L_11106850_SNP [dm3] 3L_11113750_SNP [dm6]	T	A	1.429e^-4	0.524	UPSTREAM Sod DOWNSTREAM fd68A INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3R	2825107	3R_2825107_SNP [dm3] 3R_6999385_SNP [dm6]	C	A	1.429e^-4	0.524	UPSTREAM Antp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11934167	2L_11934167_SNP [dm3] 2L_11934167_SNP [dm6]	A	G	1.430e^-4	0.524	UPSTREAM Or33a INTERGENIC
2R	11492152	2R_11492152_SNP [dm3] 2R_15604647_SNP [dm6]	G	A	1.430e^-4	0.524	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10071168	3R_10071168_SNP [dm3] 3R_14245446_SNP [dm6]	G	T	1.431e^-4	0.524	SYNONYMOUS_CODING CG9616 UPSTREAM CG43291
2L	9378778	2L_9378778_SNP [dm3] 2L_9378778_SNP [dm6]	A	T	1.436e^-4	0.525	INTRON Shawl
3R	2792313	3R_2792313_SNP [dm3] 3R_6966591_SNP [dm6]	G	A	1.439e^-4	0.525	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6158183	2L_6158183_SNP [dm3] 2L_6158183_SNP [dm6]	A	G	1.446e^-4	0.525	INTERGENIC
3L	22692697	3L_22692697_SNP [dm3] 3L_22699597_SNP [dm6]	A	G	1.449e^-4	0.525	NON_SYNONYMOUS_CODING CG45116	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	2718731	3R_2718731_SNP [dm3] 3R_6893009_SNP [dm6]	T	G	1.451e^-4	0.525	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3L	2089542	3L_2089542_SNP [dm3] 3L_2089542_SNP [dm6]	T	A	1.455e^-4	0.525	UTR_3_PRIME sls DOWNSTREAM sls INTRON sls EXON CR42860	regulatory region REDfly_CRMs
X	9755527	X_9755527_SNP [dm3] X_9861494_SNP [dm6]	C	A	1.459e^-4	0.525	INTERGENIC
2R	12698657	2R_12698657_INS [dm3] 2R_16811152_INS [dm6]	C	CC	1.459e^-4	0.525	DOWNSTREAM CR44465 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2710953	3R_2710953_SNP [dm3] 3R_6885231_SNP [dm6]	C	G	1.461e^-4	0.525	EXON CR44931	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22229564	3R_22229564_DEL [dm3] 3R_26403842_DEL [dm6]	ACTC	T	1.462e^-4	0.525	UPSTREAM ppk15 INTERGENIC
3R	16884721	3R_16884721_SNP [dm3] 3R_21058999_SNP [dm6]	C	T	1.465e^-4	0.525	UTR_5_PRIME Mvl INTRON Mvl
3L	3335828	3L_3335828_SNP [dm3] 3L_3335828_SNP [dm6]	A	G	1.467e^-4	0.525	UPSTREAM CG14969 & 1 other DOWNSTREAM Drsl6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7041292	2R_7041292_SNP [dm3] 2R_11153787_SNP [dm6]	T	G	1.474e^-4	0.525	INTRON CG13229
3R	2725115	3R_2725115_SNP [dm3] 3R_6899393_SNP [dm6]	T	C	1.475e^-4	0.525	INTRON Antp	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	5605945	X_5605945_SNP [dm3] X_5711912_SNP [dm6]	A	T	1.476e^-4	0.525	INTRON CG33080
3R	15554330	3R_15554330_SNP [dm3] 3R_19728608_SNP [dm6]	G	A	1.478e^-4	0.525	INTERGENIC
3L	22839964	3L_22839964_SNP [dm3] 3L_22846864_SNP [dm6]	A	C	1.486e^-4	0.527	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4499601	2L_4499601_SNP [dm3] 2L_4499601_SNP [dm6]	G	A	1.492e^-4	0.528	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	15032013	X_15032013_SNP [dm3] X_15137980_SNP [dm6]	A	G	1.495e^-4	0.528	UTR_3_PRIME RpL37a DOWNSTREAM drd & 1 other	TF binding site mE1_TFBS_bab1
3R	24206893	3R_24206893_SNP [dm3] 3R_28381171_SNP [dm6]	A	G	1.503e^-4	0.528	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	2739017	3R_2739017_SNP [dm3] 3R_6913295_SNP [dm6]	T	C	1.505e^-4	0.528	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	2706061	3R_2706061_SNP [dm3] 3R_6880339_SNP [dm6]	T	A	1.505e^-4	0.528	INTRON CR44931	regulatory region FlyBase REDfly_CRMs
3R	2689201	3R_2689201_SNP [dm3] 3R_6863479_SNP [dm6]	C	A	1.505e^-4	0.528	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	2657479	3R_2657479_SNP [dm3] 3R_6831757_SNP [dm6]	T	G	1.514e^-4	0.53	INTRON Scr	regulatory region REDfly_CRMs
2L	19423061	2L_19423061_SNP [dm3] 2L_19423061_SNP [dm6]	A	C	1.519e^-4	0.531	UPSTREAM CG16771 & 1 other INTRON Pax	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	18903892	3R_18903892_SNP [dm3] 3R_23078170_SNP [dm6]	T	A	1.537e^-4	0.536	INTRON CG13830
3L	3335814	3L_3335814_SNP [dm3] 3L_3335814_SNP [dm6]	T	A	1.542e^-4	0.536	UPSTREAM CG14969 & 1 other DOWNSTREAM Drsl6 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6465463	2R_6465463_SNP [dm3] 2R_10577958_SNP [dm6]	T	C	1.543e^-4	0.536	INTRON psq
2L	3619497	2L_3619497_SNP [dm3] 2L_3619497_SNP [dm6]	C	A	1.546e^-4	0.536	NON_SYNONYMOUS_CODING Dot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	19305454	2R_19305454_SNP [dm3] 2R_23417931_SNP [dm6]	G	A	1.562e^-4	0.539	DOWNSTREAM CG30411 INTRON CG9812
3L	11022588	3L_11022588_SNP [dm3] 3L_11029488_SNP [dm6]	G	C	1.562e^-4	0.539	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2788505	3L_2788505_SNP [dm3] 3L_2788505_SNP [dm6]	C	T	1.566e^-4	0.539	UTR_3_PRIME CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2785162	3R_2785162_SNP [dm3] 3R_6959440_SNP [dm6]	C	A	1.570e^-4	0.539	INTRON Antp	TF binding site mE1_TFBS_cad
3R	937147	3R_937147_SNP [dm3] 3R_5111425_SNP [dm6]	C	T	1.575e^-4	0.539	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15554324	3R_15554324_SNP [dm3] 3R_19728602_SNP [dm6]	C	T	1.576e^-4	0.539	INTERGENIC
X	5606173	X_5606173_SNP [dm3] X_5712140_SNP [dm6]	T	G	1.578e^-4	0.539	INTRON CG33080
3L	8415707	3L_8415707_SNP [dm3] 3L_8422607_SNP [dm6]	T	C	1.580e^-4	0.539	UPSTREAM CG32354 INTERGENIC
3R	2676636	3R_2676636_SNP [dm3] 3R_6850914_SNP [dm6]	G	A	1.584e^-4	0.539	UPSTREAM Scr INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	2673094	3R_2673094_SNP [dm3] 3R_6847372_SNP [dm6]	T	G	1.587e^-4	0.539	INTRON Scr	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12991313	3L_12991313_SNP [dm3] 3L_12998213_SNP [dm6]	A	G	1.591e^-4	0.539	DOWNSTREAM CG11262 INTERGENIC
3R	24532580	3R_24532580_SNP [dm3] 3R_28706858_SNP [dm6]	C	T	1.596e^-4	0.539	INTRON htt
2L	17901761	2L_17901761_SNP [dm3] 2L_17901761_SNP [dm6]	C	G	1.598e^-4	0.539	DOWNSTREAM CR45332 INTERGENIC
3R	19152790	3R_19152790_SNP [dm3] 3R_23327068_SNP [dm6]	T	C	1.601e^-4	0.539	INTRON pnt
2R	14748952	2R_14748952_SNP [dm3] 2R_18861447_SNP [dm6]	G	A	1.603e^-4	0.539	SYNONYMOUS_CODING Jheh3
X	8874693	X_8874693_SNP [dm3] X_8980660_SNP [dm6]	G	A	1.604e^-4	0.539	INTRON rdgA & 1 other
2R	8839047	2R_8839047_INS [dm3] 2R_12951542_INS [dm6]	A	ATATATGATATTCGA...	1.605e^-4	0.539	INTRON CG44251 & 1 other
3R	2656077	3R_2656077_SNP [dm3] 3R_6830355_SNP [dm6]	T	C	1.610e^-4	0.539	INTRON Scr	regulatory region REDfly_CRMs
2L	9633995	2L_9633995_SNP [dm3] 2L_9633995_SNP [dm6]	T	C	1.611e^-4	0.539	UPSTREAM Apoltp INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	9831497	2L_9831497_SNP [dm3] 2L_9831497_SNP [dm6]	A	G	1.619e^-4	0.539	INTRON nAChRalpha6
3R	26315809	3R_26315809_SNP [dm3] 3R_30490087_SNP [dm6]	G	C	1.622e^-4	0.539	UTR_5_PRIME PH4alphaSG2 DOWNSTREAM Jon99Fi
2L	9378788	2L_9378788_SNP [dm3] 2L_9378788_SNP [dm6]	A	C	1.625e^-4	0.539	INTRON Shawl
3R	2801803	3R_2801803_SNP [dm3] 3R_6976081_SNP [dm6]	C	T	1.626e^-4	0.539	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3R	14084635	3R_14084635_SNP [dm3] 3R_18258913_SNP [dm6]	T	G	1.627e^-4	0.539	INTERGENIC
X	10492544	X_10492544_SNP [dm3] X_10598511_SNP [dm6]	C	G	1.630e^-4	0.539	UTR_3_PRIME CG1628 & 1 other
3R	2764448	3R_2764448_SNP [dm3] 3R_6938726_SNP [dm6]	C	A	1.631e^-4	0.539	INTRON Antp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	25882211	3R_25882211_SNP [dm3] 3R_30056489_SNP [dm6]	A	C	1.632e^-4	0.539	SYNONYMOUS_CODING CG15526 UPSTREAM CG7950 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10201430	3L_10201430_SNP [dm3] 3L_10208330_SNP [dm6]	G	A	1.636e^-4	0.539	INTERGENIC
3L	10440851	3L_10440851_SNP [dm3] 3L_10447751_SNP [dm6]	G	A	1.649e^-4	0.542	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3531726	X_3531726_SNP [dm3] X_3637693_SNP [dm6]	A	C	1.654e^-4	0.542	INTRON AstA-R1
3L	5347385	3L_5347385_SNP [dm3] 3L_5354285_SNP [dm6]	G	T	1.657e^-4	0.542	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	2709458	3R_2709458_SNP [dm3] 3R_6883736_SNP [dm6]	T	G	1.657e^-4	0.542	INTRON CR44931	regulatory region REDfly_CRMs
3R	22229554	3R_22229554_DEL [dm3] 3R_26403832_DEL [dm6]	TAGCGC	T	1.662e^-4	0.542	UPSTREAM ppk15 INTERGENIC
3R	2725172	3R_2725172_SNP [dm3] 3R_6899450_SNP [dm6]	G	A	1.672e^-4	0.542	INTRON Antp	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	12725272	3R_12725272_SNP [dm3] 3R_16899550_SNP [dm6]	C	T	1.673e^-4	0.542	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16328318	3L_16328318_SNP [dm3] 3L_16335218_SNP [dm6]	T	A	1.675e^-4	0.542	INTERGENIC
3R	12725455	3R_12725455_SNP [dm3] 3R_16899733_SNP [dm6]	C	T	1.676e^-4	0.542	EXON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	7728460	3L_7728460_SNP [dm3] 3L_7735360_SNP [dm6]	C	A	1.678e^-4	0.542	INTRON CG32373 & 1 other
2R	5287825	2R_5287825_SNP [dm3] 2R_9400320_SNP [dm6]	C	A	1.678e^-4	0.542	UTR_5_PRIME CG33774 DOWNSTREAM wun & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	25798764	3R_25798764_SNP [dm3] 3R_29973042_SNP [dm6]	T	C	1.678e^-4	0.542	INTERGENIC
X	10068558	X_10068558_SNP [dm3] X_10174525_SNP [dm6]	T	C	1.687e^-4	0.543	INTRON CG43902 & 1 other
3R	25093602	3R_25093602_SNP [dm3] 3R_29267880_SNP [dm6]	G	A	1.688e^-4	0.543	INTERGENIC	regulatory region REDfly_CRMs
3R	2788046	3R_2788046_SNP [dm3] 3R_6962324_SNP [dm6]	A	T	1.689e^-4	0.543	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3R	13874280	3R_13874280_INS [dm3] 3R_18048558_INS [dm6]	A	ATCG	1.694e^-4	0.543	UTR_5_PRIME htl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15152282	3R_15152282_SNP [dm3] 3R_19326560_SNP [dm6]	A	G	1.699e^-4	0.543	UPSTREAM Dl DOWNSTREAM CR44175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	14672915	3R_14672915_SNP [dm3] 3R_18847193_SNP [dm6]	A	G	1.701e^-4	0.543	INTRON CG18208
2R	16944046	2R_16944046_SNP [dm3] 2R_21056541_SNP [dm6]	T	A	1.710e^-4	0.543	UTR_5_PRIME shg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	2212053	2L_2212053_SNP [dm3] 2L_2212053_SNP [dm6]	T	C	1.713e^-4	0.543	NON_SYNONYMOUS_CODING CG15385 DOWNSTREAM Uch	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15308443	2L_15308443_SNP [dm3] 2L_15308443_SNP [dm6]	G	A	1.717e^-4	0.543	INTERGENIC
2R	17860301	2R_17860301_SNP [dm3] 2R_21972796_SNP [dm6]	A	T	1.720e^-4	0.543	UPSTREAM CG9304 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9114998	3L_9114998_SNP [dm3] 3L_9121898_SNP [dm6]	A	G	1.721e^-4	0.543	INTRON bol
3L	15934110	3L_15934110_SNP [dm3] 3L_15941010_SNP [dm6]	T	C	1.721e^-4	0.543	INTRON Pka-C3
X	11237149	X_11237149_SNP [dm3] X_11343116_SNP [dm6]	G	C	1.722e^-4	0.543	INTRON CG34348
3L	10145706	3L_10145706_SNP [dm3] 3L_10152606_SNP [dm6]	T	C	1.724e^-4	0.543	SYNONYMOUS_CODING CG8072 UPSTREAM snoRNA:MeU2-A31 INTRON dpr10
X	2566444	X_2566444_DEL [dm3] X_2672411_DEL [dm6]	TAAGTGTGCGAGCC...	G	1.736e^-4	0.546	INTRON sgg
2L	14031919	2L_14031919_SNP [dm3] 2L_14031919_SNP [dm6]	A	T	1.740e^-4	0.546	UPSTREAM CG18095 DOWNSTREAM CR45284 INTERGENIC
3R	14094096	3R_14094096_SNP [dm3] 3R_18268374_SNP [dm6]	C	G	1.743e^-4	0.546	INTRON CG18599
3L	18825496	3L_18825496_SNP [dm3] 3L_18832396_SNP [dm6]	G	A	1.744e^-4	0.546	INTRON Indy
2L	16878565	2L_16878565_SNP [dm3] 2L_16878565_SNP [dm6]	C	A	1.750e^-4	0.547	UTR_3_PRIME CG32832 UPSTREAM CG31743 & 1 other DOWNSTREAM CR31781	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19347857	3R_19347857_SNP [dm3] 3R_23522135_SNP [dm6]	C	A	1.752e^-4	0.547	UPSTREAM CG10177 DOWNSTREAM CG10175 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc
3R	25501294	3R_25501294_SNP [dm3] 3R_29675572_SNP [dm6]	C	G	1.760e^-4	0.548	UPSTREAM Cap-D2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	22840610	3L_22840610_SNP [dm3] 3L_22847510_SNP [dm6]	G	T	1.768e^-4	0.548	DOWNSTREAM tRNA:CR32460 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15251885	2R_15251885_SNP [dm3] 2R_19364380_SNP [dm6]	C	T	1.776e^-4	0.548	SYNONYMOUS_CODING CG10051	TF binding site mE1_TFBS_cad
2L	14796215	2L_14796215_SNP [dm3] 2L_14796215_SNP [dm6]	A	T	1.786e^-4	0.548	INTRON CG18420
3R	15326797	3R_15326797_SNP [dm3] 3R_19501075_SNP [dm6]	G	A	1.788e^-4	0.548	INTRON Dys
3R	15326815	3R_15326815_SNP [dm3] 3R_19501093_SNP [dm6]	C	T	1.788e^-4	0.548	INTRON Dys
2R	4520707	2R_4520707_SNP [dm3] 2R_8633202_SNP [dm6]	C	A	1.790e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8305939	2R_8305939_DEL [dm3] 2R_12418434_DEL [dm6]	TT	T	1.791e^-4	0.548	DOWNSTREAM CG42782 & 1 other INTERGENIC
3L	14989650	3L_14989650_SNP [dm3] 3L_14996550_SNP [dm6]	C	T	1.792e^-4	0.548	SYNONYMOUS_CODING Zip71B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11136753	2R_11136753_DEL [dm3] 2R_15249248_DEL [dm6]	CA	C	1.792e^-4	0.548	UTR_5_PRIME scb	TF binding site mE1_TFBS_cad
3L	18818449	3L_18818449_SNP [dm3] 3L_18825349_SNP [dm6]	C	T	1.798e^-4	0.548	INTRON Cat
3R	14146112	3R_14146112_SNP [dm3] 3R_18320390_SNP [dm6]	A	C	1.799e^-4	0.548	INTRON CG31235
3R	25142648	3R_25142648_SNP [dm3] 3R_29316926_SNP [dm6]	G	T	1.801e^-4	0.548	SYNONYMOUS_CODING Cnx99A	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	11818559	3R_11818559_SNP [dm3] 3R_15992837_SNP [dm6]	G	A	1.802e^-4	0.548	INTRON srp & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	4747648	2L_4747648_SNP [dm3] 2L_4747648_SNP [dm6]	G	A	1.803e^-4	0.548	INTRON CG15630
3R	14869335	3R_14869335_SNP [dm3] 3R_19043613_SNP [dm6]	G	C	1.804e^-4	0.548	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5347382	3L_5347382_SNP [dm3] 3L_5354282_SNP [dm6]	A	C	1.808e^-4	0.548	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	5441324	3R_5441324_SNP [dm3] 3R_9615602_SNP [dm6]	A	C	1.809e^-4	0.548	INTRON CG8312	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	14672990	3R_14672990_SNP [dm3] 3R_18847268_SNP [dm6]	G	A	1.810e^-4	0.548	INTRON CG18208
3R	15554309	3R_15554309_SNP [dm3] 3R_19728587_SNP [dm6]	T	C	1.817e^-4	0.549	INTERGENIC
3R	14618202	3R_14618202_SNP [dm3] 3R_18792480_SNP [dm6]	G	C	1.835e^-4	0.553	UPSTREAM CG7720 INTRON CG7720
3R	2732666	3R_2732666_SNP [dm3] 3R_6906944_SNP [dm6]	A	T	1.837e^-4	0.553	DOWNSTREAM Antp INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17048262	3R_17048262_SNP [dm3] 3R_21222540_SNP [dm6]	A	G	1.847e^-4	0.555	SYNONYMOUS_CODING Oga DOWNSTREAM CG3337	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	10573867	3R_10573867_SNP [dm3] 3R_14748145_SNP [dm6]	A	T	1.851e^-4	0.556	UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	14831295	3L_14831295_SNP [dm3] 3L_14838195_SNP [dm6]	A	G	1.855e^-4	0.556	INTRON CG17839
2L	14660810	2L_14660810_INS [dm3] 2L_14660810_INS [dm6]	G	GG	1.861e^-4	0.557	INTRON osp
3L	10761355	3L_10761355_SNP [dm3] 3L_10768255_SNP [dm6]	G	C	1.866e^-4	0.557	INTERGENIC
3L	8606691	3L_8606691_SNP [dm3] 3L_8613591_SNP [dm6]	A	G	1.867e^-4	0.557	INTRON CG6282
3R	13844224	3R_13844224_INS [dm3] 3R_18018502_INS [dm6]	A	AG	1.869e^-4	0.557	UTR_3_PRIME cpo UPSTREAM DNaseII
3R	14556875	3R_14556875_SNP [dm3] 3R_18731153_SNP [dm6]	G	A	1.877e^-4	0.558	UTR_3_PRIME Cha
3L	7015368	3L_7015368_SNP [dm3] 3L_7022268_SNP [dm6]	C	T	1.878e^-4	0.558	INTRON Mp
3R	2644421	3R_2644421_SNP [dm3] 3R_6818699_SNP [dm6]	A	C	1.885e^-4	0.558	DOWNSTREAM tRNA:CR31485:Psi INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16642619	2L_16642619_SNP [dm3] 2L_16642619_SNP [dm6]	A	C	1.887e^-4	0.558	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	18000515	2R_18000515_SNP [dm3] 2R_22113010_SNP [dm6]	A	G	1.889e^-4	0.558	UPSTREAM CG30280 & 1 other INTRON Vrp1
2L	3211528	2L_3211528_INS [dm3] 2L_3211528_INS [dm6]	C	CA	1.900e^-4	0.558	DOWNSTREAM CR45336 INTERGENIC
3L	14677420	3L_14677420_DEL [dm3] 3L_14684320_DEL [dm6]	AGCACAGA	A	1.900e^-4	0.558	UPSTREAM CG5048 INTRON ome
2R	19905647	2R_19905647_SNP [dm3] 2R_24018124_SNP [dm6]	A	T	1.902e^-4	0.558	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	21948258	X_21948258_SNP [dm3] X_22546422_SNP [dm6]	G	A	1.908e^-4	0.558	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	1036440	3R_1036440_SNP [dm3] 3R_5210718_SNP [dm6]	C	T	1.910e^-4	0.558	INTRON cno	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10107079	3L_10107079_SNP [dm3] 3L_10113979_SNP [dm6]	C	T	1.910e^-4	0.558	DOWNSTREAM dpr6 INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	2731564	3R_2731564_SNP [dm3] 3R_6905842_SNP [dm6]	T	A	1.916e^-4	0.558	INTRON Antp
3R	25143140	3R_25143140_SNP [dm3] 3R_29317418_SNP [dm6]	G	A	1.917e^-4	0.558	SYNONYMOUS_CODING Cnx99A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14708100	3R_14708100_SNP [dm3] 3R_18882378_SNP [dm6]	C	G	1.918e^-4	0.558	INTERGENIC
3L	16014859	3L_16014859_SNP [dm3] 3L_16021759_SNP [dm6]	G	A	1.919e^-4	0.558	UPSTREAM CR43949 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	7995840	3L_7995840_SNP [dm3] 3L_8002740_SNP [dm6]	C	A	1.928e^-4	0.559	INTRON nmo
3R	2717632	3R_2717632_INS [dm3] 3R_6891910_INS [dm6]	G	GAGG	1.930e^-4	0.559	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3R	2689170	3R_2689170_SNP [dm3] 3R_6863448_SNP [dm6]	A	G	1.934e^-4	0.559	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14269508	3R_14269508_SNP [dm3] 3R_18443786_SNP [dm6]	T	G	1.934e^-4	0.559	INTRON fru
2R	18503900	2R_18503900_SNP [dm3] 2R_22616395_SNP [dm6]	C	A	1.962e^-4	0.564	INTRON CG33143	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2801046	3R_2801046_SNP [dm3] 3R_6975324_SNP [dm6]	G	A	1.963e^-4	0.564	INTRON Antp	TF binding site BDTNP1_TFBS_dl
3L	6092020	3L_6092020_SNP [dm3] 3L_6098920_SNP [dm6]	C	T	1.964e^-4	0.564	INTRON Ets65A
3R	24721445	3R_24721445_SNP [dm3] 3R_28895723_SNP [dm6]	T	A	1.968e^-4	0.564	INTRON Doa
3R	18903893	3R_18903893_SNP [dm3] 3R_23078171_SNP [dm6]	T	C	1.972e^-4	0.564	INTRON CG13830
3R	2716962	3R_2716962_INS [dm3] 3R_6891240_INS [dm6]	C	CTGG	1.974e^-4	0.564	INTERGENIC	regulatory region FlyBase REDfly_CRMs
X	10918298	X_10918298_SNP [dm3] X_11024265_SNP [dm6]	G	A	1.975e^-4	0.564	INTRON CG42339
3L	13609387	3L_13609387_SNP [dm3] 3L_13616287_SNP [dm6]	A	G	1.979e^-4	0.564	INTRON bru-3
X	12973589	X_12973589_SNP [dm3] X_13079556_SNP [dm6]	C	G	1.980e^-4	0.564	UTR_3_PRIME hep DOWNSTREAM hep & 1 other
2L	10531522	2L_10531522_SNP [dm3] 2L_10531522_SNP [dm6]	C	A	1.983e^-4	0.564	UTR_3_PRIME Lip4 UPSTREAM CG18301
3R	2776414	3R_2776414_SNP [dm3] 3R_6950692_SNP [dm6]	G	A	1.989e^-4	0.565	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2807354	3R_2807354_SNP [dm3] 3R_6981632_SNP [dm6]	C	A	1.998e^-4	0.567	INTRON Antp	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	14965203	3L_14965203_SNP [dm3] 3L_14972103_SNP [dm6]	G	T	2.003e^-4	0.567	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16266063	3L_16266063_SNP [dm3] 3L_16272963_SNP [dm6]	T	C	2.007e^-4	0.567	UTR_5_PRIME CG13066
3L	14993682	3L_14993682_SNP [dm3] 3L_15000582_SNP [dm6]	A	G	2.008e^-4	0.567	UPSTREAM mRpL39 DOWNSTREAM Reck INTRON Prosbeta2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	24839427	3R_24839427_SNP [dm3] 3R_29013705_SNP [dm6]	G	A	2.010e^-4	0.567	INTRON wat
3L	2135430	3L_2135430_SNP [dm3] 3L_2135430_SNP [dm6]	A	G	2.012e^-4	0.567	SYNONYMOUS_CODING zormin	TF binding site mE1_TFBS_chinmo
3R	13874885	3R_13874885_SNP [dm3] 3R_18049163_SNP [dm6]	G	A	2.016e^-4	0.567	UTR_5_PRIME htl INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14915940	2L_14915940_SNP [dm3] 2L_14915940_SNP [dm6]	A	T	2.025e^-4	0.567	INTRON CG42313
X	6480144	X_6480144_SNP [dm3] X_6586111_SNP [dm6]	G	A	2.025e^-4	0.567	DOWNSTREAM CG34417 INTRON CG34417
3R	10431192	3R_10431192_SNP [dm3] 3R_14605470_SNP [dm6]	C	T	2.027e^-4	0.567	SYNONYMOUS_CODING stumps	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2758714	3R_2758714_SNP [dm3] 3R_6932992_SNP [dm6]	A	G	2.030e^-4	0.567	UPSTREAM Antp INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11417700	3L_11417700_SNP [dm3] 3L_11424600_SNP [dm6]	A	C	2.031e^-4	0.567	UPSTREAM CG7560 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	8104256	X_8104256_SNP [dm3] X_8210223_SNP [dm6]	C	G	2.044e^-4	0.57	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	6519476	3L_6519476_SNP [dm3] 3L_6526376_SNP [dm6]	T	A	2.047e^-4	0.57	INTRON sfl
X	9704577	X_9704577_SNP [dm3] X_9810544_SNP [dm6]	G	T	2.051e^-4	0.57	INTRON CG32698
3R	2744228	3R_2744228_SNP [dm3] 3R_6918506_SNP [dm6]	T	C	2.060e^-4	0.572	INTRON Antp
3R	2618891	3R_2618891_SNP [dm3] 3R_6793169_SNP [dm6]	G	A	2.064e^-4	0.572	INTRON Dfd
3R	2738552	3R_2738552_SNP [dm3] 3R_6912830_SNP [dm6]	G	A	2.068e^-4	0.572	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
3L	6515859	3L_6515859_SNP [dm3] 3L_6522759_SNP [dm6]	A	G	2.069e^-4	0.572	INTRON sfl
3L	11035444	3L_11035444_SNP [dm3] 3L_11042344_SNP [dm6]	G	T	2.072e^-4	0.572	INTRON CG43693	TF binding site mE1_TFBS_HSA
3L	2587500	3L_2587500_INS [dm3] 3L_2587500_INS [dm6]	A	AA	2.078e^-4	0.572	UTR_5_PRIME RpL8 UPSTREAM msn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	8930612	3L_8930612_SNP [dm3] 3L_8937512_SNP [dm6]	T	C	2.079e^-4	0.572	UTR_3_PRIME orb2 UPSTREAM CG43783 INTRON CG43783
2L	16878368	2L_16878368_SNP [dm3] 2L_16878368_SNP [dm6]	G	T	2.081e^-4	0.572	UTR_3_PRIME CG32832 DOWNSTREAM CG32832 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7015174	3L_7015174_SNP [dm3] 3L_7022074_SNP [dm6]	G	A	2.088e^-4	0.572	INTRON Mp
3R	2610689	3R_2610689_SNP [dm3] 3R_6784967_SNP [dm6]	A	T	2.090e^-4	0.572	INTERGENIC	regulatory region REDfly_CRMs
X	15459218	X_15459218_SNP [dm3] X_15565185_SNP [dm6]	G	T	2.103e^-4	0.574	INTERGENIC
2L	6116297	2L_6116297_SNP [dm3] 2L_6116297_SNP [dm6]	A	T	2.108e^-4	0.574	INTRON stai
3L	6752669	3L_6752669_SNP [dm3] 3L_6759569_SNP [dm6]	T	C	2.111e^-4	0.574	INTRON CG32392
X	8607605	X_8607605_DEL [dm3] X_8713572_DEL [dm6]	GAGGAG	G	2.115e^-4	0.574	INTRON CG2004	TF binding site mE1_TFBS_inv
3L	21197114	3L_21197114_SNP [dm3] 3L_21204014_SNP [dm6]	T	G	2.117e^-4	0.574	UPSTREAM CG33056 & 1 other INTRON CG10512
2L	10531586	2L_10531586_SNP [dm3] 2L_10531586_SNP [dm6]	T	C	2.121e^-4	0.574	UTR_3_PRIME Lip4 UPSTREAM CG18301 DOWNSTREAM Lip4
X	21220291	X_21220291_SNP [dm3] X_21349264_SNP [dm6]	C	T	2.125e^-4	0.574	INTRON pen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2738276	3R_2738276_SNP [dm3] 3R_6912554_SNP [dm6]	A	T	2.127e^-4	0.574	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	13845675	3R_13845675_SNP [dm3] 3R_18019953_SNP [dm6]	A	G	2.131e^-4	0.574	INTRON DNaseII
3L	9725571	3L_9725571_SNP [dm3] 3L_9732471_SNP [dm6]	T	C	2.132e^-4	0.574	INTRON CG6749	TF binding site mE1_TFBS_cad
3R	14672903	3R_14672903_SNP [dm3] 3R_18847181_SNP [dm6]	T	C	2.136e^-4	0.574	INTRON CG18208
2L	5089580	2L_5089580_SNP [dm3] 2L_5089580_SNP [dm6]	C	T	2.138e^-4	0.574	INTRON pgant5
X	7801572	X_7801572_SNP [dm3] X_7907539_SNP [dm6]	T	G	2.140e^-4	0.574	UTR_5_PRIME dpr14	TF binding site BDTNP1_TFBS_dl
3R	2707567	3R_2707567_DEL [dm3] 3R_6881845_DEL [dm6]	AAAGGCCGTTA...	A	2.142e^-4	0.574	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19266794	3R_19266794_SNP [dm3] 3R_23441072_SNP [dm6]	T	A	2.145e^-4	0.574	INTRON CG4374
3R	11052287	3R_11052287_SNP [dm3] 3R_15226565_SNP [dm6]	C	G	2.151e^-4	0.574	INTRON Caf1	TF binding site mE1_TFBS_sens
3L	4691848	3L_4691848_SNP [dm3] 3L_4691848_SNP [dm6]	G	T	2.151e^-4	0.574	UPSTREAM RhoGEF64C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	24209745	3R_24209745_SNP [dm3] 3R_28384023_SNP [dm6]	C	T	2.155e^-4	0.574	INTERGENIC
2L	19204148	2L_19204148_SNP [dm3] 2L_19204148_SNP [dm6]	G	A	2.158e^-4	0.574	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	14878709	3R_14878709_SNP [dm3] 3R_19052987_SNP [dm6]	G	A	2.159e^-4	0.574	INTRON cdi
3L	1214425	3L_1214425_SNP [dm3] 3L_1214425_SNP [dm6]	G	A	2.160e^-4	0.574	INTRON mwh
3L	17691238	3L_17691238_SNP [dm3] 3L_17698138_SNP [dm6]	T	C	2.167e^-4	0.574	INTRON Ccn
2L	17901827	2L_17901827_SNP [dm3] 2L_17901827_SNP [dm6]	C	A	2.173e^-4	0.574	DOWNSTREAM CR45333 EXON CR45332
3L	14569108	3L_14569108_SNP [dm3] 3L_14576008_SNP [dm6]	C	A	2.173e^-4	0.574	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da
2R	11134429	2R_11134429_SNP [dm3] 2R_15246924_SNP [dm6]	T	G	2.174e^-4	0.574	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18503822	2R_18503822_SNP [dm3] 2R_22616317_SNP [dm6]	T	C	2.174e^-4	0.574	INTRON CG33143	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7780406	3L_7780406_SNP [dm3] 3L_7787306_SNP [dm6]	C	T	2.192e^-4	0.574	INTRON CG32369
3L	16185151	3L_16185151_SNP [dm3] 3L_16192051_SNP [dm6]	G	A	2.195e^-4	0.574	INTERGENIC
2R	4477192	2R_4477192_SNP [dm3] 2R_8589687_SNP [dm6]	T	A	2.195e^-4	0.574	UPSTREAM CG14752 INTERGENIC	TF binding site mE1_TFBS_cad
3R	18597916	3R_18597916_SNP [dm3] 3R_22772194_SNP [dm6]	A	T	2.196e^-4	0.574	UPSTREAM CG43095 INTRON Usp12-46 & 1 other
3L	5343827	3L_5343827_SNP [dm3] 3L_5350727_SNP [dm6]	C	T	2.198e^-4	0.574	INTRON lama
3R	2737821	3R_2737821_SNP [dm3] 3R_6912099_SNP [dm6]	A	G	2.204e^-4	0.574	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
X	8874799	X_8874799_SNP [dm3] X_8980766_SNP [dm6]	G	A	2.204e^-4	0.574	INTRON rdgA & 1 other
3L	8779027	3L_8779027_SNP [dm3] 3L_8785927_SNP [dm6]	A	G	2.211e^-4	0.574	INTRON Fhos
3R	24839013	3R_24839013_SNP [dm3] 3R_29013291_SNP [dm6]	G	A	2.218e^-4	0.574	INTRON wat
2L	9465686	2L_9465686_SNP [dm3] 2L_9465686_SNP [dm6]	C	G	2.225e^-4	0.574	INTERGENIC
2L	14795131	2L_14795131_DEL [dm3] 2L_14795131_DEL [dm6]	CC	C	2.226e^-4	0.574	UTR_3_PRIME CG18420
2R	14942251	2R_14942251_SNP [dm3] 2R_19054746_SNP [dm6]	C	T	2.227e^-4	0.574	DOWNSTREAM CG15116 INTERGENIC
3R	2750472	3R_2750472_SNP [dm3] 3R_6924750_SNP [dm6]	A	T	2.228e^-4	0.574	INTRON Antp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16962694	3L_16962694_SNP [dm3] 3L_16969594_SNP [dm6]	T	G	2.230e^-4	0.574	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
3L	11101045	3L_11101045_SNP [dm3] 3L_11107945_SNP [dm6]	A	C	2.232e^-4	0.574	UPSTREAM CG12522 & 1 other DOWNSTREAM CG34012 INTERGENIC
3R	10161615	3R_10161615_SNP [dm3] 3R_14335893_SNP [dm6]	T	C	2.238e^-4	0.574	INTRON NK7.1
3R	25502086	3R_25502086_SNP [dm3] 3R_29676364_SNP [dm6]	G	A	2.242e^-4	0.574	SYNONYMOUS_CODING Cap-D2 UPSTREAM Bub3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	9115045	3L_9115045_INS [dm3] 3L_9121945_INS [dm6]	A	ACACACGTT	2.243e^-4	0.574	INTRON bol
3R	2726411	3R_2726411_SNP [dm3] 3R_6900689_SNP [dm6]	C	T	2.244e^-4	0.574	INTRON Antp
2L	8285588	2L_8285588_SNP [dm3] 2L_8285588_SNP [dm6]	C	T	2.244e^-4	0.574	INTRON Btk29A
3R	14621501	3R_14621501_SNP [dm3] 3R_18795779_SNP [dm6]	A	T	2.245e^-4	0.574	UPSTREAM CG7720 INTERGENIC
2L	6809736	2L_6809736_SNP [dm3] 2L_6809736_SNP [dm6]	A	G	2.246e^-4	0.574	INTERGENIC
3R	22512998	3R_22512998_SNP [dm3] 3R_26687276_SNP [dm6]	G	A	2.253e^-4	0.574	INTERGENIC
3L	8315536	3L_8315536_SNP [dm3] 3L_8322436_SNP [dm6]	T	A	2.254e^-4	0.574	DOWNSTREAM CG13670 INTERGENIC
X	9213330	X_9213330_SNP [dm3] X_9319297_SNP [dm6]	G	T	2.258e^-4	0.574	UPSTREAM c12.2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	10728835	3L_10728835_SNP [dm3] 3L_10735735_SNP [dm6]	T	C	2.261e^-4	0.574	INTERGENIC
3R	2674345	3R_2674345_SNP [dm3] 3R_6848623_SNP [dm6]	A	G	2.261e^-4	0.574	UPSTREAM Scr INTRON Scr	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	2707312	3R_2707312_SNP [dm3] 3R_6881590_SNP [dm6]	A	G	2.264e^-4	0.574	INTRON CR44931	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_eve mE1_TFBS_HSA
3R	2760208	3R_2760208_SNP [dm3] 3R_6934486_SNP [dm6]	G	A	2.266e^-4	0.574	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8164523	3L_8164523_SNP [dm3] 3L_8171423_SNP [dm6]	T	G	2.278e^-4	0.576	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi
3R	26333660	3R_26333660_SNP [dm3] 3R_30507938_SNP [dm6]	C	A	2.279e^-4	0.576	NON_SYNONYMOUS_CODING CG15539 UPSTREAM CG34041
3L	10774936	3L_10774936_SNP [dm3] 3L_10781836_SNP [dm6]	A	T	2.285e^-4	0.577	INTERGENIC
2R	10153098	2R_10153098_SNP [dm3] 2R_14265593_SNP [dm6]	A	G	2.288e^-4	0.577	INTRON CG8547
3R	14524724	3R_14524724_SNP [dm3] 3R_18699002_SNP [dm6]	T	G	2.290e^-4	0.577	INTERGENIC
3R	8199602	3R_8199602_SNP [dm3] 3R_12373880_SNP [dm6]	T	A	2.302e^-4	0.578	UPSTREAM GstD4 DOWNSTREAM GstD3 INTERGENIC
3R	22229600	3R_22229600_SNP [dm3] 3R_26403878_SNP [dm6]	G	A	2.305e^-4	0.578	UPSTREAM ppk15 INTERGENIC
3R	14773414	3R_14773414_SNP [dm3] 3R_18947692_SNP [dm6]	A	G	2.314e^-4	0.578	NON_SYNONYMOUS_CODING CG42613
2L	4239945	2L_4239945_SNP [dm3] 2L_4239945_SNP [dm6]	G	T	2.314e^-4	0.578	DOWNSTREAM CR45720 INTERGENIC
3R	13845730	3R_13845730_SNP [dm3] 3R_18020008_SNP [dm6]	C	T	2.317e^-4	0.578	INTRON DNaseII	TF binding site mE1_TFBS_cad
3L	9162836	3L_9162836_DEL [dm3] 3L_9169736_DEL [dm6]	TT	T	2.320e^-4	0.578	INTRON Rdl
3L	5501686	3L_5501686_SNP [dm3] 3L_5508586_SNP [dm6]	G	A	2.321e^-4	0.578	INTRON CG34342
2R	6647695	2R_6647695_SNP [dm3] 2R_10760190_SNP [dm6]	A	C	2.322e^-4	0.578	UPSTREAM CR43605 INTRON CG33144
3L	12523440	3L_12523440_DEL [dm3] 3L_12530340_DEL [dm6]	TTAGCGCACATATT...	T	2.324e^-4	0.578	UPSTREAM nst DOWNSTREAM Tsf2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	2739165	3R_2739165_SNP [dm3] 3R_6913443_SNP [dm6]	C	T	2.333e^-4	0.58	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
X	5330003	X_5330003_SNP [dm3] X_5435970_SNP [dm6]	C	A	2.343e^-4	0.58	DOWNSTREAM CR44471 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16403215	X_16403215_SNP [dm3] X_16509182_SNP [dm6]	C	T	2.345e^-4	0.58	INTRON para
2R	16446164	2R_16446164_SNP [dm3] 2R_20558659_SNP [dm6]	A	G	2.349e^-4	0.58	NON_SYNONYMOUS_CODING lms DOWNSTREAM Mgat1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2657435	3R_2657435_SNP [dm3] 3R_6831713_SNP [dm6]	T	A	2.352e^-4	0.58	INTRON Scr	regulatory region REDfly_CRMs
3L	21037359	3L_21037359_DEL [dm3] 3L_21044259_DEL [dm6]	CG	C	2.354e^-4	0.58	INTRON siz	TF binding site mE1_TFBS_sens
3L	21351791	3L_21351791_SNP [dm3] 3L_21358691_SNP [dm6]	A	G	2.355e^-4	0.58	SYNONYMOUS_CODING CG32437	TF binding site mE1_TFBS_sens
X	21947194	X_21947194_DEL [dm3] X_22545358_DEL [dm6]	GCGTTTCCGACCATATATTG...	G	2.359e^-4	0.58	INTERGENIC	transposable element FlyBase
2L	6116465	2L_6116465_SNP [dm3] 2L_6116465_SNP [dm6]	G	A	2.372e^-4	0.58	INTRON stai
X	9704570	X_9704570_SNP [dm3] X_9810537_SNP [dm6]	G	A	2.373e^-4	0.58	INTRON CG32698
2L	7395024	2L_7395024_SNP [dm3] 2L_7395024_SNP [dm6]	T	A	2.374e^-4	0.58	INTRON CG5160
3R	24085950	3R_24085950_SNP [dm3] 3R_28260228_SNP [dm6]	C	A	2.379e^-4	0.58	INTERGENIC
3L	4913437	3L_4913437_SNP [dm3] 3L_4913437_SNP [dm6]	C	T	2.379e^-4	0.58	INTRON Rh50
3R	2731774	3R_2731774_SNP [dm3] 3R_6906052_SNP [dm6]	C	T	2.384e^-4	0.58	DOWNSTREAM Antp INTRON Antp
2R	7678313	2R_7678313_SNP [dm3] 2R_11790808_SNP [dm6]	C	A	2.386e^-4	0.58	UTR_5_PRIME ths INTRON ths	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2724679	3R_2724679_SNP [dm3] 3R_6898957_SNP [dm6]	G	A	2.388e^-4	0.58	INTRON Antp
3L	5752740	3L_5752740_SNP [dm3] 3L_5759640_SNP [dm6]	G	T	2.389e^-4	0.58	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5287989	2R_5287989_SNP [dm3] 2R_9400484_SNP [dm6]	A	G	2.390e^-4	0.58	UPSTREAM CG33774 DOWNSTREAM wun & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
2R	11385534	2R_11385534_INS [dm3] 2R_15498029_INS [dm6]	T	TTAAACTT	2.390e^-4	0.58	UPSTREAM CG12964 INTERGENIC
3R	3776287	3R_3776287_SNP [dm3] 3R_7950565_SNP [dm6]	T	A	2.395e^-4	0.58	INTRON dsx
3L	7266444	3L_7266444_SNP [dm3] 3L_7273344_SNP [dm6]	G	T	2.399e^-4	0.58	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
2R	17100230	2R_17100230_SNP [dm3] 2R_21212725_SNP [dm6]	A	G	2.401e^-4	0.58	UTR_3_PRIME CG44245 DOWNSTREAM CG4302
2L	4247068	2L_4247068_SNP [dm3] 2L_4247068_SNP [dm6]	G	A	2.404e^-4	0.58	INTRON CR44059
2R	9366698	2R_9366698_SNP [dm3] 2R_13479193_SNP [dm6]	T	C	2.412e^-4	0.58	INTRON arr
3R	12576442	3R_12576442_SNP [dm3] 3R_16750720_SNP [dm6]	A	T	2.412e^-4	0.58	DOWNSTREAM CG31275 INTRON bxd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	4831505	2L_4831505_SNP [dm3] 2L_4831505_SNP [dm6]	A	G	2.414e^-4	0.58	SYNONYMOUS_CODING Ir25a UPSTREAM CG2976	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22229621	3R_22229621_SNP [dm3] 3R_26403899_SNP [dm6]	G	C	2.417e^-4	0.58	UPSTREAM ppk15 INTERGENIC
2L	19209305	2L_19209305_SNP [dm3] 2L_19209305_SNP [dm6]	G	A	2.418e^-4	0.58	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26013533	3R_26013533_SNP [dm3] 3R_30187811_SNP [dm6]	C	T	2.424e^-4	0.58	INTRON CG9747
3R	6782580	3R_6782580_SNP [dm3] 3R_10956858_SNP [dm6]	A	G	2.446e^-4	0.58	INTERGENIC
3R	26316296	3R_26316296_SNP [dm3] 3R_30490574_SNP [dm6]	A	T	2.452e^-4	0.58	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
2R	19158241	2R_19158241_SNP [dm3] 2R_23270718_SNP [dm6]	T	C	2.454e^-4	0.58	SYNONYMOUS_CODING CG13540 DOWNSTREAM ord	TF binding site BDTNP1_TFBS_twi
3R	17841271	3R_17841271_SNP [dm3] 3R_22015549_SNP [dm6]	A	T	2.457e^-4	0.58	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	8007752	2R_8007752_SNP [dm3] 2R_12120247_SNP [dm6]	A	G	2.461e^-4	0.58	UPSTREAM jeb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2718736	3R_2718736_SNP [dm3] 3R_6893014_SNP [dm6]	T	C	2.468e^-4	0.58	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3R	15750002	3R_15750002_SNP [dm3] 3R_19924280_SNP [dm6]	T	C	2.469e^-4	0.58	INTRON CG4462
3R	26013521	3R_26013521_SNP [dm3] 3R_30187799_SNP [dm6]	A	C	2.470e^-4	0.58	INTRON CG9747
3R	2721752	3R_2721752_DEL [dm3] 3R_6896030_DEL [dm6]	CC	C	2.472e^-4	0.58	DOWNSTREAM Antp INTRON CR44932
2R	6830624	2R_6830624_SNP [dm3] 2R_10943119_SNP [dm6]	T	C	2.487e^-4	0.58	INTERGENIC
3R	24838828	3R_24838828_SNP [dm3] 3R_29013106_SNP [dm6]	C	T	2.491e^-4	0.58	INTRON wat
3R	14094253	3R_14094253_SNP [dm3] 3R_18268531_SNP [dm6]	A	G	2.493e^-4	0.58	INTRON CG18599
X	21986911	X_21986911_SNP [dm3] X_22585075_SNP [dm6]	T	C	2.496e^-4	0.58	INTRON Cda4
3R	9901309	3R_9901309_DEL [dm3] 3R_14075587_DEL [dm6]	TA	C	2.496e^-4	0.58	INTRON foxo
2R	4521136	2R_4521136_SNP [dm3] 2R_8633631_SNP [dm6]	T	G	2.501e^-4	0.58	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14862122	3R_14862122_SNP [dm3] 3R_19036400_SNP [dm6]	C	A	2.504e^-4	0.58	INTRON CG6026	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16895564	3L_16895564_SNP [dm3] 3L_16902464_SNP [dm6]	T	C	2.506e^-4	0.58	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	7015371	3L_7015371_SNP [dm3] 3L_7022271_SNP [dm6]	T	A	2.511e^-4	0.58	INTRON Mp
3R	2640317	3R_2640317_SNP [dm3] 3R_6814595_SNP [dm6]	G	A	2.514e^-4	0.58	INTRON CR42651	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	10603307	3L_10603307_SNP [dm3] 3L_10610207_SNP [dm6]	T	G	2.514e^-4	0.58	INTERGENIC
3R	24217443	3R_24217443_SNP [dm3] 3R_28391721_SNP [dm6]	C	T	2.517e^-4	0.58	INTERGENIC
2L	14915314	2L_14915314_SNP [dm3] 2L_14915314_SNP [dm6]	C	T	2.520e^-4	0.58	INTRON CG42313
3R	2618890	3R_2618890_SNP [dm3] 3R_6793168_SNP [dm6]	G	A	2.522e^-4	0.58	INTRON Dfd
2L	8952210	2L_8952210_SNP [dm3] 2L_8952210_SNP [dm6]	T	G	2.524e^-4	0.58	UPSTREAM C1GalTA INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12917690	3R_12917690_SNP [dm3] 3R_17091968_SNP [dm6]	C	A	2.525e^-4	0.58	UTR_3_PRIME cher DOWNSTREAM cal1	TF binding site mE1_TFBS_cad
3R	20238752	3R_20238752_SNP [dm3] 3R_24413030_SNP [dm6]	A	T	2.525e^-4	0.58	INTRON nAChRalpha1
3R	14869530	3R_14869530_SNP [dm3] 3R_19043808_SNP [dm6]	C	T	2.527e^-4	0.58	SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	14989289	3L_14989289_SNP [dm3] 3L_14996189_SNP [dm6]	C	T	2.527e^-4	0.58	SYNONYMOUS_CODING Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	417974	3L_417974_SNP [dm3] 3L_417974_SNP [dm6]	T	A	2.528e^-4	0.58	INTERGENIC	regulatory region REDfly_CRMs
2R	20327513	2R_20327513_SNP [dm3] 2R_24439990_SNP [dm6]	G	A	2.530e^-4	0.58	INTERGENIC
3R	10240371	3R_10240371_SNP [dm3] 3R_14414649_SNP [dm6]	C	T	2.530e^-4	0.58	INTRON cv-c
3R	10240394	3R_10240394_SNP [dm3] 3R_14414672_SNP [dm6]	G	T	2.530e^-4	0.58	INTRON cv-c
2R	17113882	2R_17113882_SNP [dm3] 2R_21226377_SNP [dm6]	C	A	2.533e^-4	0.58	INTRON ASPP
3L	6766328	3L_6766328_SNP [dm3] 3L_6773228_SNP [dm6]	G	C	2.535e^-4	0.58	INTERGENIC
3L	10204390	3L_10204390_INS [dm3] 3L_10211290_INS [dm6]	T	TT	2.539e^-4	0.58	INTERGENIC
3R	9440266	3R_9440266_SNP [dm3] 3R_13614544_SNP [dm6]	G	A	2.544e^-4	0.58	INTERGENIC
3L	20874849	3L_20874849_SNP [dm3] 3L_20881749_SNP [dm6]	C	A	2.544e^-4	0.58	UTR_5_PRIME CG32432
3R	2724281	3R_2724281_INS [dm3] 3R_6898559_INS [dm6]	A	AAA	2.544e^-4	0.58	INTRON Antp
3R	14673021	3R_14673021_SNP [dm3] 3R_18847299_SNP [dm6]	A	T	2.549e^-4	0.58	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7362632	2L_7362632_SNP [dm3] 2L_7362632_SNP [dm6]	T	C	2.553e^-4	0.58	UPSTREAM Wnt10 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	12820786	2R_12820786_SNP [dm3] 2R_16933281_SNP [dm6]	T	G	2.554e^-4	0.58	INTRON Pkc53E
3L	8885348	3L_8885348_SNP [dm3] 3L_8892248_SNP [dm6]	C	A	2.554e^-4	0.58	INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5985504	3L_5985504_SNP [dm3] 3L_5992404_SNP [dm6]	C	A	2.555e^-4	0.58	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2718729	3R_2718729_SNP [dm3] 3R_6893007_SNP [dm6]	G	T	2.555e^-4	0.58	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3L	10774968	3L_10774968_SNP [dm3] 3L_10781868_SNP [dm6]	A	G	2.562e^-4	0.58	INTERGENIC
3R	12576440	3R_12576440_SNP [dm3] 3R_16750718_SNP [dm6]	A	T	2.565e^-4	0.58	DOWNSTREAM CG31275 INTRON bxd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	16947332	2R_16947332_SNP [dm3] 2R_21059827_SNP [dm6]	A	C	2.567e^-4	0.58	UTR_3_PRIME cpa & 1 other UPSTREAM mRpL54
X	15459328	X_15459328_SNP [dm3] X_15565295_SNP [dm6]	G	A	2.571e^-4	0.58	INTERGENIC
2L	6070837	2L_6070837_SNP [dm3] 2L_6070837_SNP [dm6]	T	A	2.571e^-4	0.58	UPSTREAM Kr-h2 & 1 other DOWNSTREAM CG13993 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	7413190	2L_7413190_SNP [dm3] 2L_7413190_SNP [dm6]	A	C	2.576e^-4	0.58	SYNONYMOUS_CODING chm DOWNSTREAM CG15818	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18818405	3L_18818405_SNP [dm3] 3L_18825305_SNP [dm6]	C	T	2.578e^-4	0.58	INTRON Cat
3R	8199613	3R_8199613_SNP [dm3] 3R_12373891_SNP [dm6]	G	C	2.587e^-4	0.581	UPSTREAM GstD4 DOWNSTREAM GstD3 INTERGENIC
2L	3745033	2L_3745033_SNP [dm3] 2L_3745033_SNP [dm6]	C	T	2.590e^-4	0.581	UPSTREAM CG10019 INTRON CG10019
X	7841440	X_7841440_SNP [dm3] X_7947407_SNP [dm6]	G	T	2.596e^-4	0.581	SPLICE_SITE_REGION CG42593 UPSTREAM l_1_G0193 INTRON CG42593	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14869417	3R_14869417_SNP [dm3] 3R_19043695_SNP [dm6]	A	C	2.600e^-4	0.581	NON_SYNONYMOUS_CODING CG6026	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14967472	3R_14967472_SNP [dm3] 3R_19141750_SNP [dm6]	A	T	2.602e^-4	0.581	INTRON Ppcs
2R	12821145	2R_12821145_SNP [dm3] 2R_16933640_SNP [dm6]	T	G	2.604e^-4	0.581	INTRON Pkc53E	TF binding site BDTNP1_TFBS_twi
3R	2748452	3R_2748452_SNP [dm3] 3R_6922730_SNP [dm6]	G	A	2.606e^-4	0.581	INTRON Antp
X	10068534	X_10068534_SNP [dm3] X_10174501_SNP [dm6]	A	G	2.619e^-4	0.581	INTRON CG43902 & 1 other
3L	6439775	3L_6439775_SNP [dm3] 3L_6446675_SNP [dm6]	T	C	2.620e^-4	0.581	INTRON CG42747
2R	13145142	2R_13145142_SNP [dm3] 2R_17257637_SNP [dm6]	T	C	2.624e^-4	0.581	NON_SYNONYMOUS_CODING CG43108 INTRON mbl
3L	1080550	3L_1080550_SNP [dm3] 3L_1080550_SNP [dm6]	G	A	2.625e^-4	0.581	INTRON bab1	TF binding site mE1_TFBS_chinmo
3L	19177205	3L_19177205_SNP [dm3] 3L_19184105_SNP [dm6]	T	C	2.627e^-4	0.581	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	18622710	X_18622710_SNP [dm3] X_18728677_SNP [dm6]	C	T	2.628e^-4	0.581	INTERGENIC
3L	8454406	3L_8454406_SNP [dm3] 3L_8461306_SNP [dm6]	A	G	2.629e^-4	0.581	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9831398	2L_9831398_SNP [dm3] 2L_9831398_SNP [dm6]	A	G	2.632e^-4	0.581	INTRON nAChRalpha6
X	21948257	X_21948257_SNP [dm3] X_22546421_SNP [dm6]	T	C	2.638e^-4	0.581	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	13323712	3L_13323712_SNP [dm3] 3L_13330612_SNP [dm6]	T	G	2.638e^-4	0.581	DOWNSTREAM CG14113 INTERGENIC
2L	16511662	2L_16511662_SNP [dm3] 2L_16511662_SNP [dm6]	C	G	2.643e^-4	0.581	INTRON CG5953	TF binding site mE1_TFBS_cad
3L	11160756	3L_11160756_SNP [dm3] 3L_11167656_SNP [dm6]	T	A	2.643e^-4	0.581	INTRON wls
3R	25222105	3R_25222105_SNP [dm3] 3R_29396383_SNP [dm6]	G	A	2.661e^-4	0.583	INTRON Ptp99A
3R	14673072	3R_14673072_SNP [dm3] 3R_18847350_SNP [dm6]	A	G	2.662e^-4	0.583	INTRON CG18208	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14362539	2R_14362539_SNP [dm3] 2R_18475034_SNP [dm6]	T	G	2.667e^-4	0.583	INTRON CG30116
3R	9447957	3R_9447957_SNP [dm3] 3R_13622235_SNP [dm6]	T	A	2.669e^-4	0.583	INTERGENIC
3R	25882373	3R_25882373_SNP [dm3] 3R_30056651_SNP [dm6]	T	A	2.675e^-4	0.583	UPSTREAM CG7950 & 2 others DOWNSTREAM CG15526 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12991309	3L_12991309_SNP [dm3] 3L_12998209_SNP [dm6]	C	G	2.685e^-4	0.583	DOWNSTREAM CG11262 INTERGENIC
3L	18591969	3L_18591969_SNP [dm3] 3L_18598869_SNP [dm6]	A	G	2.687e^-4	0.583	DOWNSTREAM CR45390 INTERGENIC
3R	22881875	3R_22881875_SNP [dm3] 3R_27056153_SNP [dm6]	G	A	2.691e^-4	0.583	INTRON RYa-R
3R	2718761	3R_2718761_SNP [dm3] 3R_6893039_SNP [dm6]	T	A	2.692e^-4	0.583	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10602540	3L_10602540_INS [dm3] 3L_10609440_INS [dm6]	A	AATATAATAATATTAATAA...	2.692e^-4	0.583	INTERGENIC
X	3543180	X_3543180_SNP [dm3] X_3649147_SNP [dm6]	G	C	2.693e^-4	0.583	INTRON AstA-R1
3R	2761117	3R_2761117_SNP [dm3] 3R_6935395_SNP [dm6]	T	C	2.693e^-4	0.583	INTRON Antp	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7974214	3L_7974214_SNP [dm3] 3L_7981114_SNP [dm6]	G	A	2.695e^-4	0.583	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	5206295	2R_5206295_SNP [dm3] 2R_9318790_SNP [dm6]	C	T	2.696e^-4	0.583	NON_SYNONYMOUS_CODING CG13739 INTRON CG13954	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25174515	3R_25174515_SNP [dm3] 3R_29348793_SNP [dm6]	G	A	2.711e^-4	0.584	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20809256	X_20809256_INS [dm3] X_20938229_INS [dm6]	A	ATTAAACAATGGAGCAATGT...	2.714e^-4	0.584	INTRON Npc1b
2L	15308440	2L_15308440_SNP [dm3] 2L_15308440_SNP [dm6]	A	T	2.717e^-4	0.584	INTERGENIC
X	18157844	X_18157844_SNP [dm3] X_18263811_SNP [dm6]	A	G	2.720e^-4	0.584	INTERGENIC
3L	16029554	3L_16029554_SNP [dm3] 3L_16036454_SNP [dm6]	G	A	2.722e^-4	0.584	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
3L	8779443	3L_8779443_SNP [dm3] 3L_8786343_SNP [dm6]	T	A	2.724e^-4	0.584	SYNONYMOUS_CODING Fhos
3L	10774271	3L_10774271_SNP [dm3] 3L_10781171_SNP [dm6]	A	T	2.725e^-4	0.584	INTERGENIC
3R	2753134	3R_2753134_SNP [dm3] 3R_6927412_SNP [dm6]	T	G	2.727e^-4	0.584	INTRON Antp
3L	10145661	3L_10145661_SNP [dm3] 3L_10152561_SNP [dm6]	T	C	2.727e^-4	0.584	SYNONYMOUS_CODING CG8072 UPSTREAM snoRNA:MeU2-A31 INTRON dpr10
3R	2627144	3R_2627144_SNP [dm3] 3R_6801422_SNP [dm6]	T	C	2.731e^-4	0.584	INTRON Dfd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
X	3531846	X_3531846_SNP [dm3] X_3637813_SNP [dm6]	A	G	2.748e^-4	0.587	INTRON AstA-R1
3L	6157972	3L_6157972_SNP [dm3] 3L_6164872_SNP [dm6]	G	A	2.755e^-4	0.587	DOWNSTREAM CG10289 & 1 other INTERGENIC
3R	18903811	3R_18903811_SNP [dm3] 3R_23078089_SNP [dm6]	G	A	2.757e^-4	0.587	INTRON CG13830
2R	19305945	2R_19305945_SNP [dm3] 2R_23418422_SNP [dm6]	C	A	2.759e^-4	0.587	INTRON CG9812
X	21948261	X_21948261_SNP [dm3] X_22546425_SNP [dm6]	A	C	2.764e^-4	0.588	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	18082905	3R_18082905_DEL [dm3] 3R_22257183_DEL [dm6]	CGGC	C	2.770e^-4	0.588	INTRON SKIP
3R	15844780	3R_15844780_SNP [dm3] 3R_20019058_SNP [dm6]	G	A	2.772e^-4	0.588	SYNONYMOUS_CODING CG4433 DOWNSTREAM CG4836
3L	1214440	3L_1214440_SNP [dm3] 3L_1214440_SNP [dm6]	A	G	2.777e^-4	0.588	INTRON mwh
X	3543437	X_3543437_SNP [dm3] X_3649404_SNP [dm6]	C	G	2.797e^-4	0.589	INTRON AstA-R1
X	16628054	X_16628054_SNP [dm3] X_16734021_SNP [dm6]	A	C	2.798e^-4	0.589	UPSTREAM TwdlY INTRON CG9634
3L	2917800	3L_2917800_SNP [dm3] 3L_2917800_SNP [dm6]	C	G	2.803e^-4	0.589	INTRON Shab
3R	2376548	3R_2376548_SNP [dm3] 3R_6550826_SNP [dm6]	T	C	2.804e^-4	0.589	DOWNSTREAM Pif2 INTRON dpr11
3R	13854917	3R_13854917_SNP [dm3] 3R_18029195_SNP [dm6]	G	C	2.804e^-4	0.589	INTERGENIC
3L	10774281	3L_10774281_SNP [dm3] 3L_10781181_SNP [dm6]	A	G	2.808e^-4	0.589	INTERGENIC
3R	24216200	3R_24216200_SNP [dm3] 3R_28390478_SNP [dm6]	T	G	2.809e^-4	0.589	INTERGENIC
3L	8164995	3L_8164995_SNP [dm3] 3L_8171895_SNP [dm6]	C	T	2.814e^-4	0.589	SYNONYMOUS_CODING RecQ4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13048935	3R_13048935_SNP [dm3] 3R_17223213_SNP [dm6]	A	C	2.815e^-4	0.589	UPSTREAM CG31262 INTERGENIC
3L	5463113	3L_5463113_SNP [dm3] 3L_5470013_SNP [dm6]	C	T	2.816e^-4	0.589	INTERGENIC
X	21946848	X_21946848_SNP [dm3] X_22545012_SNP [dm6]	G	A	2.817e^-4	0.589	UPSTREAM CG17599 INTERGENIC
3L	10773016	3L_10773016_SNP [dm3] 3L_10779916_SNP [dm6]	T	A	2.824e^-4	0.589	INTERGENIC
2L	3919892	2L_3919892_SNP [dm3] 2L_3919892_SNP [dm6]	A	G	2.826e^-4	0.589	INTRON fred
X	21948260	X_21948260_SNP [dm3] X_22546424_SNP [dm6]	A	T	2.828e^-4	0.589	UPSTREAM CG17601 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	25251019	3R_25251019_SNP [dm3] 3R_29425297_SNP [dm6]	G	A	2.834e^-4	0.589	INTRON Ptp99A
3R	25839733	3R_25839733_DEL [dm3] 3R_30014011_DEL [dm6]	GACTTGTTTATG...	G	2.837e^-4	0.589	INTRON CG7920
2L	9633551	2L_9633551_SNP [dm3] 2L_9633551_SNP [dm6]	G	A	2.840e^-4	0.589	UPSTREAM Apoltp INTERGENIC
3R	13746686	3R_13746686_SNP [dm3] 3R_17920964_SNP [dm6]	A	G	2.843e^-4	0.589	UTR_5_PRIME cpo
3L	10623667	3L_10623667_SNP [dm3] 3L_10630567_SNP [dm6]	G	A	2.844e^-4	0.589	SYNONYMOUS_CODING CG42535 UPSTREAM CG42536 & 2 others	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_run
3L	8605137	3L_8605137_SNP [dm3] 3L_8612037_SNP [dm6]	A	C	2.845e^-4	0.589	INTRON CG6282
3R	2294060	3R_2294060_SNP [dm3] 3R_6468338_SNP [dm6]	G	A	2.849e^-4	0.589	UPSTREAM Neurochondrin INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	21860391	X_21860391_SNP [dm3] X_22458555_SNP [dm6]	C	T	2.849e^-4	0.589	INTRON CG14619
3R	14967468	3R_14967468_SNP [dm3] 3R_19141746_SNP [dm6]	T	C	2.856e^-4	0.59	INTRON Ppcs
3R	13399838	3R_13399838_SNP [dm3] 3R_17574116_SNP [dm6]	C	T	2.870e^-4	0.592	INTERGENIC
3R	19192904	3R_19192904_SNP [dm3] 3R_23367182_SNP [dm6]	A	C	2.873e^-4	0.592	INTERGENIC	TF binding site mE1_TFBS_inv
3R	16725575	3R_16725575_SNP [dm3] 3R_20899853_SNP [dm6]	C	A	2.875e^-4	0.592	INTERGENIC
3L	1214439	3L_1214439_SNP [dm3] 3L_1214439_SNP [dm6]	G	C	2.881e^-4	0.592	INTRON mwh
2L	17901524	2L_17901524_SNP [dm3] 2L_17901524_SNP [dm6]	G	T	2.886e^-4	0.592	DOWNSTREAM CR45332 INTERGENIC
X	8753854	X_8753854_SNP [dm3] X_8859821_SNP [dm6]	G	A	2.890e^-4	0.592	INTRON CG12075
3R	24660049	3R_24660049_SNP [dm3] 3R_28834327_SNP [dm6]	C	T	2.895e^-4	0.592	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
2R	19229047	2R_19229047_SNP [dm3] 2R_23341524_SNP [dm6]	C	G	2.897e^-4	0.592	INTERGENIC
2R	14619553	2R_14619553_DEL [dm3] 2R_18732048_DEL [dm6]	CAGGC	C	2.901e^-4	0.592	INTRON Hs3st-A
3L	16329850	3L_16329850_SNP [dm3] 3L_16336750_SNP [dm6]	G	C	2.903e^-4	0.592	INTERGENIC
2R	5259299	2R_5259299_DEL [dm3] 2R_9371794_DEL [dm6]	ATGTA	A	2.906e^-4	0.592	INTRON CG13954	TF binding site mE1_TFBS_cad
2R	4970692	2R_4970692_SNP [dm3] 2R_9083187_SNP [dm6]	T	A	2.906e^-4	0.592	DOWNSTREAM CG8083 INTRON CNT1
3R	2712244	3R_2712244_DEL [dm3] 3R_6886522_DEL [dm6]	GG	G	2.922e^-4	0.592	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25914532	3R_25914532_SNP [dm3] 3R_30088810_SNP [dm6]	G	A	2.922e^-4	0.592	INTRON sima
3L	6752673	3L_6752673_SNP [dm3] 3L_6759573_SNP [dm6]	A	G	2.924e^-4	0.592	INTRON CG32392
2L	3064659	2L_3064659_SNP [dm3] 2L_3064659_SNP [dm6]	A	C	2.932e^-4	0.592	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2701652	3R_2701652_SNP [dm3] 3R_6875930_SNP [dm6]	G	T	2.938e^-4	0.592	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16947731	2R_16947731_SNP [dm3] 2R_21060226_SNP [dm6]	C	T	2.938e^-4	0.592	SYNONYMOUS_CODING CG15653 UPSTREAM mRpL54 DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7773981	3L_7773981_INS [dm3] 3L_7780881_INS [dm6]	A	AA	2.939e^-4	0.592	INTRON CG32369	TF binding site BDTNP1_TFBS_dl
3R	12576422	3R_12576422_SNP [dm3] 3R_16750700_SNP [dm6]	T	C	2.943e^-4	0.592	DOWNSTREAM CG31275 INTRON bxd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	6245289	2L_6245289_SNP [dm3] 2L_6245289_SNP [dm6]	T	G	2.949e^-4	0.592	INTERGENIC
2R	8007276	2R_8007276_SNP [dm3] 2R_12119771_SNP [dm6]	G	A	2.953e^-4	0.592	UPSTREAM jeb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10956002	3L_10956002_SNP [dm3] 3L_10962902_SNP [dm6]	T	C	2.954e^-4	0.592	DOWNSTREAM CR45249 INTERGENIC
3R	2661718	3R_2661718_SNP [dm3] 3R_6835996_SNP [dm6]	C	T	2.959e^-4	0.592	INTRON Scr	regulatory region REDfly_CRMs
3R	2667408	3R_2667408_SNP [dm3] 3R_6841686_SNP [dm6]	G	A	2.963e^-4	0.592	SYNONYMOUS_CODING Scr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2616512	3R_2616512_SNP [dm3] 3R_6790790_SNP [dm6]	G	A	2.965e^-4	0.592	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	5563626	2L_5563626_SNP [dm3] 2L_5563626_SNP [dm6]	T	G	2.966e^-4	0.592	DOWNSTREAM GluRIIB INTERGENIC
2R	14748910	2R_14748910_SNP [dm3] 2R_18861405_SNP [dm6]	T	C	2.967e^-4	0.592	SYNONYMOUS_CODING Jheh3
3L	12991312	3L_12991312_SNP [dm3] 3L_12998212_SNP [dm6]	T	C	2.967e^-4	0.592	DOWNSTREAM CG11262 INTERGENIC
3R	19152799	3R_19152799_SNP [dm3] 3R_23327077_SNP [dm6]	A	C	2.971e^-4	0.592	INTRON pnt
X	6631711	X_6631711_INS [dm3] X_6737678_INS [dm6]	C	TT	2.973e^-4	0.592	INTRON CG3168
2R	15148994	2R_15148994_SNP [dm3] 2R_19261489_SNP [dm6]	G	C	2.980e^-4	0.592	SYNONYMOUS_CODING CG7229	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	18502688	2R_18502688_SNP [dm3] 2R_22615183_SNP [dm6]	C	T	2.981e^-4	0.592	INTRON CG33143
2L	12322022	2L_12322022_SNP [dm3] 2L_12322022_SNP [dm6]	G	A	2.983e^-4	0.592	INTERGENIC	transposable element FlyBase
3R	22229543	3R_22229543_SNP [dm3] 3R_26403821_SNP [dm6]	A	T	2.984e^-4	0.592	UPSTREAM ppk15 INTERGENIC
3R	14125612	3R_14125612_DEL [dm3] 3R_18299890_DEL [dm6]	TCCTGCTGT	T	2.987e^-4	0.592	UTR_3_PRIME Dlc90F DOWNSTREAM CG18600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens
3L	1214397	3L_1214397_SNP [dm3] 3L_1214397_SNP [dm6]	G	T	2.988e^-4	0.592	DOWNSTREAM LysE INTRON mwh
2L	17965593	2L_17965593_SNP [dm3] 2L_17965593_SNP [dm6]	T	C	2.992e^-4	0.592	NON_SYNONYMOUS_CODING btv INTRON CG5674
X	9271917	X_9271917_DEL [dm3] X_9377884_DEL [dm6]	CTTTTTCTATTGACAAAGTG...	C	3.000e^-4	0.592	INTRON mgl
2L	3678946	2L_3678946_SNP [dm3] 2L_3678946_SNP [dm6]	T	A	3.001e^-4	0.592	INTRON CG34340
X	3768305	X_3768305_SNP [dm3] X_3874272_SNP [dm6]	G	C	3.009e^-4	0.592	INTRON CG2930	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8315474	3L_8315474_SNP [dm3] 3L_8322374_SNP [dm6]	G	A	3.010e^-4	0.592	DOWNSTREAM CG13670 INTERGENIC
2R	18506624	2R_18506624_SNP [dm3] 2R_22619119_SNP [dm6]	G	T	3.014e^-4	0.592	INTRON CG33143
2L	6028927	2L_6028927_SNP [dm3] 2L_6028927_SNP [dm6]	A	T	3.016e^-4	0.592	INTRON CG9109
3L	19345823	3L_19345823_SNP [dm3] 3L_19352723_SNP [dm6]	T	C	3.030e^-4	0.592	INTRON CG32206
3R	17841313	3R_17841313_SNP [dm3] 3R_22015591_SNP [dm6]	T	C	3.031e^-4	0.592	SYNONYMOUS_CODING CG6332 DOWNSTREAM CG6439	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	10540761	2L_10540761_SNP [dm3] 2L_10540761_SNP [dm6]	G	A	3.034e^-4	0.592	INTERGENIC
2L	9634887	2L_9634887_SNP [dm3] 2L_9634887_SNP [dm6]	G	A	3.042e^-4	0.592	INTRON Apoltp
3R	2689479	3R_2689479_SNP [dm3] 3R_6863757_SNP [dm6]	A	T	3.051e^-4	0.592	UPSTREAM ftz INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3731912	3L_3731912_SNP [dm3] 3L_3731912_SNP [dm6]	T	C	3.058e^-4	0.592	INTRON CG32264	TF binding site mE1_TFBS_inv
3L	16962695	3L_16962695_SNP [dm3] 3L_16969595_SNP [dm6]	A	G	3.060e^-4	0.592	UPSTREAM Exn DOWNSTREAM Nc73EF INTERGENIC
2L	14920937	2L_14920937_SNP [dm3] 2L_14920937_SNP [dm6]	A	C	3.061e^-4	0.592	INTRON CG42313
3R	2737847	3R_2737847_SNP [dm3] 3R_6912125_SNP [dm6]	G	T	3.061e^-4	0.592	INTRON Antp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14093941	3R_14093941_SNP [dm3] 3R_18268219_SNP [dm6]	A	G	3.063e^-4	0.592	INTRON CG18599	TF binding site mE1_TFBS_run
3L	1214466	3L_1214466_SNP [dm3] 3L_1214466_SNP [dm6]	G	C	3.063e^-4	0.592	INTRON mwh
2L	11934165	2L_11934165_SNP [dm3] 2L_11934165_SNP [dm6]	A	T	3.065e^-4	0.592	UPSTREAM Or33a INTERGENIC
3R	12576426	3R_12576426_SNP [dm3] 3R_16750704_SNP [dm6]	C	G	3.067e^-4	0.592	DOWNSTREAM CG31275 INTRON bxd	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	5333763	2L_5333763_SNP [dm3] 2L_5333763_SNP [dm6]	T	A	3.067e^-4	0.592	INTRON fusl
2R	11529636	2R_11529636_MNP [dm3] 2R_15642131_MNP [dm6]	TAA	ATT	3.068e^-4	0.592	INTRON CG42524
3R	10808657	3R_10808657_SNP [dm3] 3R_14982935_SNP [dm6]	A	G	3.071e^-4	0.592	INTERGENIC
3R	12234545	3R_12234545_SNP [dm3] 3R_16408823_SNP [dm6]	A	C	3.077e^-4	0.592	INTERGENIC
2R	10727385	2R_10727385_DEL [dm3] 2R_14839880_DEL [dm6]	TATGTTCATATGAAT...	T	3.077e^-4	0.592	INTERGENIC
X	8618334	X_8618334_SNP [dm3] X_8724301_SNP [dm6]	A	C	3.078e^-4	0.592	UPSTREAM CR43297 INTERGENIC
X	15459645	X_15459645_SNP [dm3] X_15565612_SNP [dm6]	G	A	3.082e^-4	0.592	INTERGENIC
3L	21227201	3L_21227201_INS [dm3] 3L_21234101_INS [dm6]	T	TTCT	3.084e^-4	0.592	INTRON Eip78C
3L	2089585	3L_2089585_SNP [dm3] 3L_2089585_SNP [dm6]	T	G	3.085e^-4	0.592	UTR_3_PRIME sls DOWNSTREAM sls INTRON sls EXON CR42860	regulatory region REDfly_CRMs
2R	18506259	2R_18506259_SNP [dm3] 2R_22618754_SNP [dm6]	G	A	3.089e^-4	0.592	INTRON CG33143
3L	6157963	3L_6157963_SNP [dm3] 3L_6164863_SNP [dm6]	A	T	3.093e^-4	0.592	DOWNSTREAM CG10289 & 1 other INTERGENIC
3L	5302090	3L_5302090_SNP [dm3] 3L_5308990_SNP [dm6]	A	G	3.094e^-4	0.592	INTERGENIC
3R	14556404	3R_14556404_SNP [dm3] 3R_18730682_SNP [dm6]	T	C	3.097e^-4	0.592	INTRON Cha
2R	18502981	2R_18502981_SNP [dm3] 2R_22615476_SNP [dm6]	G	A	3.100e^-4	0.592	INTRON CG33143
3R	10242255	3R_10242255_SNP [dm3] 3R_14416533_SNP [dm6]	T	G	3.101e^-4	0.592	SYNONYMOUS_CODING cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14685803	2R_14685803_SNP [dm3] 2R_18798298_SNP [dm6]	C	T	3.107e^-4	0.592	SYNONYMOUS_CODING l_2_08717	TF binding site mE1_TFBS_chinmo
3L	20853635	3L_20853635_SNP [dm3] 3L_20860535_SNP [dm6]	A	G	3.108e^-4	0.592	INTRON CG32432
2L	4246603	2L_4246603_SNP [dm3] 2L_4246603_SNP [dm6]	G	T	3.109e^-4	0.592	EXON CR44059
3L	9207486	3L_9207486_SNP [dm3] 3L_9214386_SNP [dm6]	T	A	3.111e^-4	0.592	SYNONYMOUS_CODING CG4476
3R	22574753	3R_22574753_SNP [dm3] 3R_26749031_SNP [dm6]	T	C	3.112e^-4	0.592	INTERGENIC
2R	12064558	2R_12064558_SNP [dm3] 2R_16177053_SNP [dm6]	G	T	3.113e^-4	0.592	INTRON Ptp52F
3R	16494797	3R_16494797_SNP [dm3] 3R_20669075_SNP [dm6]	C	T	3.113e^-4	0.592	UPSTREAM Cpr92F INTERGENIC	TF binding site mE1_TFBS_cad
2L	7154698	2L_7154698_SNP [dm3] 2L_7154698_SNP [dm6]	T	C	3.117e^-4	0.592	INTRON Pvf3
3R	26456772	3R_26456772_SNP [dm3] 3R_30631050_SNP [dm6]	C	T	3.119e^-4	0.592	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17224276	3R_17224276_SNP [dm3] 3R_21398554_SNP [dm6]	G	T	3.125e^-4	0.592	INTRON CG6475	TF binding site mE1_TFBS_sens
X	3704703	X_3704703_SNP [dm3] X_3810670_SNP [dm6]	T	C	3.127e^-4	0.592	UTR_3_PRIME fd3F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	4732780	2L_4732780_SNP [dm3] 2L_4732780_SNP [dm6]	T	C	3.134e^-4	0.592	SYNONYMOUS_CODING CG15631
3L	11060857	3L_11060857_SNP [dm3] 3L_11067757_SNP [dm6]	G	A	3.139e^-4	0.592	NON_SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3153959	3R_3153959_SNP [dm3] 3R_7328237_SNP [dm6]	C	G	3.141e^-4	0.592	INTERGENIC
2L	5379157	2L_5379157_SNP [dm3] 2L_5379157_SNP [dm6]	C	T	3.142e^-4	0.592	EXON CR42850
2L	3434694	2L_3434694_SNP [dm3] 2L_3434694_SNP [dm6]	C	A	3.144e^-4	0.592	INTERGENIC
3L	14989277	3L_14989277_SNP [dm3] 3L_14996177_SNP [dm6]	T	G	3.147e^-4	0.592	SYNONYMOUS_CODING Zip71B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2702457	3R_2702457_SNP [dm3] 3R_6876735_SNP [dm6]	A	T	3.150e^-4	0.592	DOWNSTREAM CR44931 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
3R	2410814	3R_2410814_SNP [dm3] 3R_6585092_SNP [dm6]	A	G	3.154e^-4	0.592	INTRON dpr11
3R	18782674	3R_18782674_SNP [dm3] 3R_22956952_SNP [dm6]	C	T	3.155e^-4	0.592	INTRON klg

By genomic position
Variant impact
Gene name

Average Lifespan phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results