DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.706e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2254 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	19567284	X_19567284_SNP [dm3] X_19673251_SNP [dm6]	C	T	1.262e^-7	0.237	SYNONYMOUS_CODING et DOWNSTREAM Zw	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14361074	2L_14361074_SNP [dm3] 2L_14361074_SNP [dm6]	C	T	1.503e^-6	0.801	SYNONYMOUS_CODING Pgant35A UPSTREAM spel1 EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9867276	3L_9867276_SNP [dm3] 3L_9874176_SNP [dm6]	A	T	2.011e^-6	0.801	INTERGENIC
2L	9862287	2L_9862287_SNP [dm3] 2L_9862287_SNP [dm6]	G	T	2.411e^-6	0.801	INTRON nAChRalpha6
2R	8201824	2R_8201824_SNP [dm3] 2R_12314319_SNP [dm6]	G	A	2.769e^-6	0.801	SYNONYMOUS_CODING CG30046 DOWNSTREAM CG30203
2L	9824489	2L_9824489_SNP [dm3] 2L_9824489_SNP [dm6]	G	C	3.419e^-6	0.801	INTRON nAChRalpha6
3L	9867267	3L_9867267_DEL [dm3] 3L_9874167_DEL [dm6]	GGA	G	3.928e^-6	0.801	INTERGENIC
X	15328728	X_15328728_SNP [dm3] X_15434695_SNP [dm6]	G	A	3.947e^-6	0.801	INTRON Cngl
2L	14071909	2L_14071909_SNP [dm3] 2L_14071909_SNP [dm6]	A	T	5.066e^-6	0.801	INTRON nAChRalpha5
2R	8388678	2R_8388678_SNP [dm3] 2R_12501173_SNP [dm6]	A	G	5.228e^-6	0.801	UTR_3_PRIME s-cup INTRON fdl	TF binding site mE1_TFBS_cad
2R	17412993	2R_17412993_SNP [dm3] 2R_21525488_SNP [dm6]	A	G	5.508e^-6	0.801	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8388685	2R_8388685_SNP [dm3] 2R_12501180_SNP [dm6]	T	C	5.738e^-6	0.801	UTR_3_PRIME s-cup INTRON fdl	TF binding site mE1_TFBS_cad
X	13451777	X_13451777_SNP [dm3] X_13557744_SNP [dm6]	G	A	5.975e^-6	0.801	UTR_3_PRIME CG32631
X	15456465	X_15456465_SNP [dm3] X_15562432_SNP [dm6]	C	T	6.221e^-6	0.801	INTERGENIC
2L	4371341	2L_4371341_SNP [dm3] 2L_4371341_SNP [dm6]	G	A	6.437e^-6	0.801	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	7150335	3R_7150335_SNP [dm3] 3R_11324613_SNP [dm6]	G	A	6.848e^-6	0.801	INTERGENIC
X	17576687	X_17576687_SNP [dm3] X_17682654_SNP [dm6]	C	T	7.990e^-6	0.801	START_GAINED chas UTR_5_PRIME chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4453245	2L_4453245_SNP [dm3] 2L_4453245_SNP [dm6]	T	A	8.430e^-6	0.801	UTR_3_PRIME CG15440 UPSTREAM CG15439	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17576694	X_17576694_INS [dm3] X_17682661_INS [dm6]	A	ACACACTCA	1.001e^-5	0.801	UTR_5_PRIME chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7906418	2L_7906418_SNP [dm3] 2L_7906418_SNP [dm6]	A	T	1.078e^-5	0.801	INTRON Snoo
X	19567525	X_19567525_SNP [dm3] X_19673492_SNP [dm6]	C	T	1.116e^-5	0.801	INTRON et	TF binding site mE1_TFBS_cad
3L	1416797	3L_1416797_SNP [dm3] 3L_1416797_SNP [dm6]	A	T	1.273e^-5	0.801	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	12628163	3L_12628163_SNP [dm3] 3L_12635063_SNP [dm6]	G	T	1.317e^-5	0.801	INTRON CR32111	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2259058	2L_2259058_SNP [dm3] 2L_2259058_SNP [dm6]	C	T	1.319e^-5	0.801	DOWNSTREAM CR44788 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18704731	2R_18704731_SNP [dm3] 2R_22817226_SNP [dm6]	G	T	1.414e^-5	0.801	UPSTREAM CG30271 INTRON CG30271
3R	10303893	3R_10303893_SNP [dm3] 3R_14478171_SNP [dm6]	A	T	1.429e^-5	0.801	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	9963925	2L_9963925_SNP [dm3] 2L_9963925_SNP [dm6]	A	T	1.474e^-5	0.801	UTR_5_PRIME CG5850 UPSTREAM CG5850 DOWNSTREAM Dref	TF binding site mE1_TFBS_HSA
3L	17739865	3L_17739865_SNP [dm3] 3L_17746765_SNP [dm6]	C	T	1.507e^-5	0.801	SYNONYMOUS_CODING CG6034 INTRON Ccn
3L	18349466	3L_18349466_SNP [dm3] 3L_18356366_SNP [dm6]	C	T	1.508e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	17412143	2R_17412143_SNP [dm3] 2R_21524638_SNP [dm6]	A	G	1.566e^-5	0.801	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
X	22241017	X_22241017_SNP [dm3] X_22839181_SNP [dm6]	T	C	1.614e^-5	0.801	INTRON fog & 1 other
2L	2257349	2L_2257349_SNP [dm3] 2L_2257349_SNP [dm6]	A	C	1.686e^-5	0.801	DOWNSTREAM CR44787 INTERGENIC
2R	16655381	2R_16655381_SNP [dm3] 2R_20767876_SNP [dm6]	A	G	1.760e^-5	0.801	DOWNSTREAM CR44665 INTERGENIC
2L	7906433	2L_7906433_SNP [dm3] 2L_7906433_SNP [dm6]	C	G	1.772e^-5	0.801	INTRON Snoo
3L	1416590	3L_1416590_SNP [dm3] 3L_1416590_SNP [dm6]	C	T	1.878e^-5	0.801	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	19743768	X_19743768_SNP [dm3] X_19849735_SNP [dm6]	A	G	1.883e^-5	0.801	INTRON pico	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14278487	2L_14278487_SNP [dm3] 2L_14278487_SNP [dm6]	C	G	1.916e^-5	0.801	SYNONYMOUS_CODING wb DOWNSTREAM CG32971	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13451854	X_13451854_SNP [dm3] X_13557821_SNP [dm6]	A	T	1.927e^-5	0.801	UTR_3_PRIME CG32631
2L	3302083	2L_3302083_SNP [dm3] 2L_3302083_SNP [dm6]	A	C	1.940e^-5	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6339157	2R_6339157_SNP [dm3] 2R_10451652_SNP [dm6]	A	T	2.126e^-5	0.801	INTRON Galphao & 1 other
X	14548459	X_14548459_SNP [dm3] X_14654426_SNP [dm6]	G	A	2.172e^-5	0.801	UPSTREAM NetA INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	3788250	2R_3788250_SNP [dm3] 2R_7900745_SNP [dm6]	T	G	2.262e^-5	0.801	INTRON CG30377	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14285748	2L_14285748_SNP [dm3] 2L_14285748_SNP [dm6]	C	T	2.348e^-5	0.801	INTRON wb
3R	2222027	3R_2222027_SNP [dm3] 3R_6396305_SNP [dm6]	C	T	2.376e^-5	0.801	INTRON Dmtn
2L	7644136	2L_7644136_SNP [dm3] 2L_7644136_SNP [dm6]	T	A	2.407e^-5	0.801	SYNONYMOUS_CODING Slob UTR_3_PRIME Slob
3R	9871739	3R_9871739_SNP [dm3] 3R_14046017_SNP [dm6]	A	T	2.432e^-5	0.801	INTERGENIC
X	14570549	X_14570549_SNP [dm3] X_14676516_SNP [dm6]	A	C	2.529e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14312986	2L_14312986_SNP [dm3] 2L_14312986_SNP [dm6]	T	A	2.579e^-5	0.801	INTRON wb
3L	1270325	3L_1270325_SNP [dm3] 3L_1270325_SNP [dm6]	G	T	2.587e^-5	0.801	INTRON CG9134
2L	19835962	2L_19835962_SNP [dm3] 2L_19835962_SNP [dm6]	G	C	2.681e^-5	0.801	INTRON sick
3L	1268061	3L_1268061_SNP [dm3] 3L_1268061_SNP [dm6]	T	C	2.692e^-5	0.801	INTRON CG9134
2L	9963915	2L_9963915_SNP [dm3] 2L_9963915_SNP [dm6]	T	C	2.708e^-5	0.801	UTR_5_PRIME CG5850 UPSTREAM CG5850 DOWNSTREAM Dref	TF binding site mE1_TFBS_HSA
X	16637652	X_16637652_SNP [dm3] X_16743619_SNP [dm6]	T	C	2.709e^-5	0.801	SYNONYMOUS_CODING Twdlalpha DOWNSTREAM CG32568 INTRON CG9634	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9963827	2L_9963827_SNP [dm3] 2L_9963827_SNP [dm6]	T	G	2.744e^-5	0.801	UTR_5_PRIME CG5850 UPSTREAM CG5850 DOWNSTREAM Dref	TF binding site mE1_TFBS_HSA
3L	1311936	3L_1311936_SNP [dm3] 3L_1311936_SNP [dm6]	A	C	2.765e^-5	0.801	SYNONYMOUS_CODING CG9186 DOWNSTREAM CG2469	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16531525	3R_16531525_SNP [dm3] 3R_20705803_SNP [dm6]	T	A	2.775e^-5	0.801	INTRON Oamb
2L	5871893	2L_5871893_DEL [dm3] 2L_5871893_DEL [dm6]	TT	T	2.836e^-5	0.801	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	4044114	2L_4044114_DEL [dm3] 2L_4044114_DEL [dm6]	TT	T	2.860e^-5	0.801	INTRON ed
2L	7906546	2L_7906546_SNP [dm3] 2L_7906546_SNP [dm6]	A	G	2.952e^-5	0.801	INTRON Snoo
3L	15665947	3L_15665947_SNP [dm3] 3L_15672847_SNP [dm6]	T	A	2.975e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4371373	2L_4371373_SNP [dm3] 2L_4371373_SNP [dm6]	A	T	3.025e^-5	0.801	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	5147645	2L_5147645_SNP [dm3] 2L_5147645_SNP [dm6]	T	A	3.086e^-5	0.801	INTRON Msp300
X	22240831	X_22240831_SNP [dm3] X_22838995_SNP [dm6]	A	G	3.105e^-5	0.801	INTRON fog & 1 other
3R	19152729	3R_19152729_SNP [dm3] 3R_23327007_SNP [dm6]	G	C	3.125e^-5	0.801	INTRON pnt
X	22237358	X_22237358_SNP [dm3] X_22835522_SNP [dm6]	A	G	3.164e^-5	0.801	INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16655391	2R_16655391_DEL [dm3] 2R_20767886_DEL [dm6]	TATGTTCTT	T	3.175e^-5	0.801	DOWNSTREAM CR44665 INTERGENIC
X	22240746	X_22240746_SNP [dm3] X_22838910_SNP [dm6]	G	C	3.290e^-5	0.801	INTRON fog & 1 other
3R	23805229	3R_23805229_SNP [dm3] 3R_27979507_SNP [dm6]	T	A	3.388e^-5	0.801	INTRON betaTub97EF
X	3325242	X_3325242_SNP [dm3] X_3431209_SNP [dm6]	C	T	3.456e^-5	0.801	INTRON CR44999 & 1 other
2R	5942024	2R_5942024_SNP [dm3] 2R_10054519_SNP [dm6]	C	T	3.473e^-5	0.801	NON_SYNONYMOUS_CODING Def INTRON magu	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	19429238	X_19429238_SNP [dm3] X_19535205_SNP [dm6]	T	A	3.482e^-5	0.801	INTRON CG32532
2L	4371369	2L_4371369_SNP [dm3] 2L_4371369_SNP [dm6]	C	A	3.558e^-5	0.801	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	6531768	X_6531768_SNP [dm3] X_6637735_SNP [dm6]	G	A	3.559e^-5	0.801	DOWNSTREAM CR44817 INTRON pigs
3L	7126064	3L_7126064_DEL [dm3] 3L_7132964_DEL [dm6]	TCTCGCACAAC...	T	3.590e^-5	0.801	INTRON Dbi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2L	9963909	2L_9963909_SNP [dm3] 2L_9963909_SNP [dm6]	A	T	3.662e^-5	0.801	UTR_5_PRIME CG5850 UPSTREAM CG5850 DOWNSTREAM Dref	TF binding site mE1_TFBS_HSA
2L	4453249	2L_4453249_SNP [dm3] 2L_4453249_SNP [dm6]	A	T	3.672e^-5	0.801	UTR_3_PRIME CG15440 UPSTREAM CG15439	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9963988	2L_9963988_SNP [dm3] 2L_9963988_SNP [dm6]	A	C	3.842e^-5	0.801	UPSTREAM CG5850 DOWNSTREAM Dref INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17261390	2R_17261390_SNP [dm3] 2R_21373885_SNP [dm6]	C	T	3.873e^-5	0.801	INTRON cv-2
X	16637649	X_16637649_SNP [dm3] X_16743616_SNP [dm6]	C	T	3.913e^-5	0.801	SYNONYMOUS_CODING Twdlalpha DOWNSTREAM CG32568 INTRON CG9634	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13994974	2L_13994974_SNP [dm3] 2L_13994974_SNP [dm6]	T	A	3.916e^-5	0.801	INTRON rk
X	15159033	X_15159033_SNP [dm3] X_15265000_SNP [dm6]	G	A	3.937e^-5	0.801	INTERGENIC
3R	2199298	3R_2199298_SNP [dm3] 3R_6373576_SNP [dm6]	G	C	4.004e^-5	0.801	UPSTREAM CG42564 & 1 other INTRON CG1041	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	4094680	2R_4094680_SNP [dm3] 2R_8207175_SNP [dm6]	T	C	4.011e^-5	0.801	INTRON LRP1
2R	8387917	2R_8387917_SNP [dm3] 2R_12500412_SNP [dm6]	A	G	4.091e^-5	0.801	NON_SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9965313	2L_9965313_SNP [dm3] 2L_9965313_SNP [dm6]	A	G	4.282e^-5	0.801	SPLICE_SITE_REGION Dref SYNONYMOUS_CODING Dref	TF binding site mE1_TFBS_sens
3L	9931767	3L_9931767_SNP [dm3] 3L_9938667_SNP [dm6]	T	A	4.345e^-5	0.801	INTRON CG34356
2R	4416203	2R_4416203_SNP [dm3] 2R_8528698_SNP [dm6]	A	T	4.477e^-5	0.801	INTRON mtt
X	19567458	X_19567458_SNP [dm3] X_19673425_SNP [dm6]	G	C	4.539e^-5	0.801	SYNONYMOUS_CODING et	TF binding site mE1_TFBS_cad
2L	14360945	2L_14360945_SNP [dm3] 2L_14360945_SNP [dm6]	A	G	4.660e^-5	0.801	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3430605	2L_3430605_SNP [dm3] 2L_3430605_SNP [dm6]	T	G	4.700e^-5	0.801	INTERGENIC
3L	11368685	3L_11368685_SNP [dm3] 3L_11375585_SNP [dm6]	A	T	4.718e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9963930	2L_9963930_SNP [dm3] 2L_9963930_SNP [dm6]	A	G	4.770e^-5	0.801	UTR_5_PRIME CG5850 UPSTREAM CG5850 DOWNSTREAM Dref	TF binding site mE1_TFBS_HSA
2L	14277449	2L_14277449_SNP [dm3] 2L_14277449_SNP [dm6]	A	T	4.861e^-5	0.801	UTR_5_PRIME CG32971 INTRON wb & 1 other
X	3325015	X_3325015_SNP [dm3] X_3430982_SNP [dm6]	T	C	4.874e^-5	0.801	INTRON CR44999 & 1 other
2L	2257494	2L_2257494_SNP [dm3] 2L_2257494_SNP [dm6]	T	G	4.924e^-5	0.801	DOWNSTREAM CR44787 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9670993	3L_9670993_SNP [dm3] 3L_9677893_SNP [dm6]	T	C	4.964e^-5	0.801	INTRON fry	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	7126060	3L_7126060_SNP [dm3] 3L_7132960_SNP [dm6]	T	A	4.998e^-5	0.801	INTRON Dbi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
2R	17786201	2R_17786201_SNP [dm3] 2R_21898696_SNP [dm6]	C	T	5.020e^-5	0.801	INTRON Fili
3L	1187532	3L_1187532_SNP [dm3] 3L_1187532_SNP [dm6]	G	T	5.072e^-5	0.801	INTERGENIC
2R	18868100	2R_18868100_SNP [dm3] 2R_22980577_SNP [dm6]	G	A	5.125e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3405143	X_3405143_DEL [dm3] X_3511110_DEL [dm6]	CC	C	5.167e^-5	0.801	UTR_3_PRIME CG32791 DOWNSTREAM CG32791 INTRON CR44999
2L	14278125	2L_14278125_INS [dm3] 2L_14278125_INS [dm6]	A	AA	5.233e^-5	0.801	DOWNSTREAM CG32971 INTRON wb
2R	7221952	2R_7221952_SNP [dm3] 2R_11334447_SNP [dm6]	C	T	5.235e^-5	0.801	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1268300	3L_1268300_SNP [dm3] 3L_1268300_SNP [dm6]	C	T	5.239e^-5	0.801	INTRON CG9134
2R	15772566	2R_15772566_SNP [dm3] 2R_19885061_SNP [dm6]	C	T	5.493e^-5	0.801	INTERGENIC
3R	20119551	3R_20119551_SNP [dm3] 3R_24293829_SNP [dm6]	A	G	5.513e^-5	0.801	SYNONYMOUS_CODING CG5715 DOWNSTREAM CG6364	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16114069	X_16114069_SNP [dm3] X_16220036_SNP [dm6]	C	T	5.662e^-5	0.801	INTERGENIC
3R	24708849	3R_24708849_SNP [dm3] 3R_28883127_SNP [dm6]	A	T	5.682e^-5	0.801	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
3L	18623549	3L_18623549_SNP [dm3] 3L_18630449_SNP [dm6]	C	T	5.736e^-5	0.801	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14938737	2L_14938737_SNP [dm3] 2L_14938737_SNP [dm6]	C	T	5.824e^-5	0.801	INTRON CG42313
2L	3302390	2L_3302390_SNP [dm3] 2L_3302390_SNP [dm6]	A	C	5.838e^-5	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17179013	2R_17179013_SNP [dm3] 2R_21291508_SNP [dm6]	C	T	5.847e^-5	0.801	SYNONYMOUS_CODING CG30392 DOWNSTREAM Sgf29	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8387879	2R_8387879_SNP [dm3] 2R_12500374_SNP [dm6]	C	T	5.862e^-5	0.801	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19828242	2L_19828242_SNP [dm3] 2L_19828242_SNP [dm6]	T	C	5.906e^-5	0.801	SYNONYMOUS_CODING sick UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad
X	22234476	X_22234476_SNP [dm3] X_22832640_SNP [dm6]	G	A	5.927e^-5	0.801	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19002801	2R_19002801_SNP [dm3] 2R_23115278_SNP [dm6]	A	G	6.021e^-5	0.801	UPSTREAM CR44782 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12184335	3L_12184335_SNP [dm3] 3L_12191235_SNP [dm6]	C	T	6.107e^-5	0.801	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4635993	3L_4635993_SNP [dm3] 3L_4635993_SNP [dm6]	A	C	6.126e^-5	0.801	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3L	1268306	3L_1268306_SNP [dm3] 3L_1268306_SNP [dm6]	A	G	6.143e^-5	0.801	INTRON CG9134
X	19567878	X_19567878_SNP [dm3] X_19673845_SNP [dm6]	C	A	6.164e^-5	0.801	INTRON et	transposable element FlyBase
2L	9964042	2L_9964042_SNP [dm3] 2L_9964042_SNP [dm6]	C	G	6.164e^-5	0.801	UPSTREAM CG5850 DOWNSTREAM Dref INTERGENIC
3L	16368797	3L_16368797_SNP [dm3] 3L_16375697_SNP [dm6]	T	C	6.206e^-5	0.801	SYNONYMOUS_CODING roq	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19000973	2R_19000973_SNP [dm3] 2R_23113450_SNP [dm6]	T	A	6.269e^-5	0.801	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1623020	2L_1623020_SNP [dm3] 2L_1623020_SNP [dm6]	A	G	6.354e^-5	0.801	EXON CR44603
2L	12146126	2L_12146126_SNP [dm3] 2L_12146126_SNP [dm6]	A	T	6.598e^-5	0.801	INTRON CG31760
3R	24708824	3R_24708824_SNP [dm3] 3R_28883102_SNP [dm6]	T	C	6.624e^-5	0.801	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
3L	1268053	3L_1268053_SNP [dm3] 3L_1268053_SNP [dm6]	C	T	6.635e^-5	0.801	INTRON CG9134
3L	14476482	3L_14476482_SNP [dm3] 3L_14483382_SNP [dm6]	C	G	6.688e^-5	0.801	INTRON bbg
2L	2284579	2L_2284579_SNP [dm3] 2L_2284579_SNP [dm6]	A	T	6.804e^-5	0.801	UPSTREAM CG4271 INTRON CR43754 EXON CR43754	TF binding site mE1_TFBS_inv
2R	20192264	2R_20192264_SNP [dm3] 2R_24304741_SNP [dm6]	G	A	6.805e^-5	0.801	INTERGENIC	regulatory region REDfly_CRMs
2R	17801723	2R_17801723_SNP [dm3] 2R_21914218_SNP [dm6]	A	G	6.866e^-5	0.801	INTRON Fili
3L	8383684	3L_8383684_SNP [dm3] 3L_8390584_SNP [dm6]	T	C	6.884e^-5	0.801	UTR_3_PRIME ImpE1 UPSTREAM Jon66Ci	TF binding site mE1_TFBS_HSA
3R	24710320	3R_24710320_SNP [dm3] 3R_28884598_SNP [dm6]	A	G	6.930e^-5	0.801	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA
2L	4371314	2L_4371314_SNP [dm3] 2L_4371314_SNP [dm6]	A	C	6.996e^-5	0.801	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	15596965	3L_15596965_SNP [dm3] 3L_15603865_SNP [dm6]	G	T	7.001e^-5	0.801	DOWNSTREAM RhoGAP71E INTRON RhoGAP71E
2R	11121071	2R_11121071_SNP [dm3] 2R_15233566_SNP [dm6]	G	T	7.086e^-5	0.801	DOWNSTREAM CR44370 INTRON Fs	TF binding site mE1_TFBS_cad
2L	7906908	2L_7906908_SNP [dm3] 2L_7906908_SNP [dm6]	G	A	7.121e^-5	0.801	INTRON Snoo
X	10891132	X_10891132_SNP [dm3] X_10997099_SNP [dm6]	A	G	7.282e^-5	0.801	INTRON CG42339
X	7964079	X_7964079_SNP [dm3] X_8070046_SNP [dm6]	T	A	7.307e^-5	0.801	UTR_3_PRIME mys DOWNSTREAM Upf2
3L	17740063	3L_17740063_SNP [dm3] 3L_17746963_SNP [dm6]	C	T	7.327e^-5	0.801	UPSTREAM CG6034 INTRON Ccn
3L	7596537	3L_7596537_SNP [dm3] 3L_7603437_SNP [dm6]	G	C	7.484e^-5	0.801	NON_SYNONYMOUS_CODING CG33275
3L	1066298	3L_1066298_SNP [dm3] 3L_1066298_SNP [dm6]	T	C	7.546e^-5	0.801	INTRON bab1
2R	16655474	2R_16655474_SNP [dm3] 2R_20767969_SNP [dm6]	A	C	7.581e^-5	0.801	DOWNSTREAM CR44665 INTERGENIC
3L	17740227	3L_17740227_SNP [dm3] 3L_17747127_SNP [dm6]	G	A	7.629e^-5	0.801	UPSTREAM CG6034 INTRON Ccn
3L	9931773	3L_9931773_SNP [dm3] 3L_9938673_SNP [dm6]	C	T	7.629e^-5	0.801	INTRON CG34356
2R	14207413	2R_14207413_SNP [dm3] 2R_18319908_SNP [dm6]	T	C	7.730e^-5	0.801	INTRON sbb
X	284645	X_284645_SNP [dm3] X_390612_SNP [dm6]	C	G	7.744e^-5	0.801	INTRON CG32816
2L	3303604	2L_3303604_SNP [dm3] 2L_3303604_SNP [dm6]	C	T	7.753e^-5	0.801	UPSTREAM CG3277 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	928972	2L_928972_SNP [dm3] 2L_928972_SNP [dm6]	C	A	7.776e^-5	0.801	INTRON CG4341
2L	924931	2L_924931_SNP [dm3] 2L_924931_SNP [dm6]	T	C	7.853e^-5	0.801	INTRON CG4341
2R	17475886	2R_17475886_SNP [dm3] 2R_21588381_SNP [dm6]	C	G	7.891e^-5	0.801	INTERGENIC
3L	4032190	3L_4032190_SNP [dm3] 3L_4032190_SNP [dm6]	G	C	7.969e^-5	0.801	SPLICE_SITE_REGION Gr64d UTR_5_PRIME Gr64d & 1 other DOWNSTREAM Gr64b & 1 other INTRON Gr64d
3R	9871710	3R_9871710_SNP [dm3] 3R_14045988_SNP [dm6]	C	T	7.998e^-5	0.801	INTERGENIC
2R	20219707	2R_20219707_SNP [dm3] 2R_24332184_SNP [dm6]	T	A	8.019e^-5	0.801	UTR_3_PRIME slbo	TF binding site mE1_TFBS_cad
X	22241232	X_22241232_SNP [dm3] X_22839396_SNP [dm6]	C	T	8.079e^-5	0.801	INTRON fog & 1 other
3L	4090164	3L_4090164_SNP [dm3] 3L_4090164_SNP [dm6]	G	T	8.112e^-5	0.801	INTRON CG14989
2L	11917520	2L_11917520_SNP [dm3] 2L_11917520_SNP [dm6]	G	C	8.125e^-5	0.801	INTRON Pde1c
2L	9942961	2L_9942961_SNP [dm3] 2L_9942961_SNP [dm6]	A	G	8.150e^-5	0.801	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619
2R	13267967	2R_13267967_SNP [dm3] 2R_17380462_SNP [dm6]	T	C	8.165e^-5	0.801	INTERGENIC
X	288078	X_288078_SNP [dm3] X_394045_SNP [dm6]	G	C	8.206e^-5	0.801	UPSTREAM CR44753 INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	18016401	2R_18016401_SNP [dm3] 2R_22128896_SNP [dm6]	G	T	8.238e^-5	0.801	INTRON NtR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	2284575	2L_2284575_SNP [dm3] 2L_2284575_SNP [dm6]	A	G	8.272e^-5	0.801	UPSTREAM CG4271 INTRON CR43754 EXON CR43754	TF binding site mE1_TFBS_inv
2L	14277922	2L_14277922_SNP [dm3] 2L_14277922_SNP [dm6]	A	G	8.289e^-5	0.801	UTR_3_PRIME CG32971 INTRON wb
2L	14277924	2L_14277924_SNP [dm3] 2L_14277924_SNP [dm6]	A	T	8.289e^-5	0.801	UTR_3_PRIME CG32971 INTRON wb
3R	19223451	3R_19223451_SNP [dm3] 3R_23397729_SNP [dm6]	C	T	8.303e^-5	0.801	INTERGENIC
X	15193070	X_15193070_SNP [dm3] X_15299037_SNP [dm6]	G	A	8.355e^-5	0.801	UTR_5_PRIME gce UPSTREAM CR44429 INTRON gce	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16655372	2R_16655372_SNP [dm3] 2R_20767867_SNP [dm6]	T	C	8.358e^-5	0.801	DOWNSTREAM CR44665 INTERGENIC
X	10943747	X_10943747_SNP [dm3] X_11049714_SNP [dm6]	G	A	8.391e^-5	0.801	DOWNSTREAM CG11160 INTERGENIC
X	14851317	X_14851317_SNP [dm3] X_14957284_SNP [dm6]	C	T	8.421e^-5	0.801	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	3302407	2L_3302407_SNP [dm3] 2L_3302407_SNP [dm6]	T	G	8.425e^-5	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17179804	2R_17179804_SNP [dm3] 2R_21292299_SNP [dm6]	A	G	8.426e^-5	0.801	UTR_3_PRIME Sgf29 UPSTREAM CG30392	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4090158	3L_4090158_SNP [dm3] 3L_4090158_SNP [dm6]	T	G	8.513e^-5	0.801	INTRON CG14989
X	9592789	X_9592789_DEL [dm3] X_9698756_DEL [dm6]	AA	G	8.527e^-5	0.801	INTERGENIC
3L	5133485	3L_5133485_SNP [dm3] 3L_5140385_SNP [dm6]	C	T	8.554e^-5	0.801	UTR_3_PRIME CHMP2B UPSTREAM Prpk DOWNSTREAM CG10672	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5133504	3L_5133504_SNP [dm3] 3L_5140404_SNP [dm6]	T	C	8.554e^-5	0.801	UTR_3_PRIME CHMP2B DOWNSTREAM CG10672	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13829303	X_13829303_SNP [dm3] X_13935270_SNP [dm6]	T	C	8.577e^-5	0.801	INTRON mamo
3L	7520705	3L_7520705_SNP [dm3] 3L_7527605_SNP [dm6]	A	T	8.678e^-5	0.801	UTR_3_PRIME ltl	TF binding site BDTNP1_TFBS_dl
3R	4806405	3R_4806405_SNP [dm3] 3R_8980683_SNP [dm6]	C	A	8.690e^-5	0.801	UPSTREAM CAHbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	18281063	X_18281063_SNP [dm3] X_18387030_SNP [dm6]	G	C	8.724e^-5	0.801	UPSTREAM Tsf1 INTERGENIC
2L	15161242	2L_15161242_SNP [dm3] 2L_15161242_SNP [dm6]	T	C	8.791e^-5	0.801	DOWNSTREAM CG4168 & 1 other INTERGENIC
X	22241066	X_22241066_SNP [dm3] X_22839230_SNP [dm6]	A	G	8.795e^-5	0.801	INTRON fog & 1 other
2R	16730360	2R_16730360_SNP [dm3] 2R_20842855_SNP [dm6]	T	A	8.820e^-5	0.801	INTERGENIC
2R	17151026	2R_17151026_SNP [dm3] 2R_21263521_SNP [dm6]	A	G	8.825e^-5	0.801	INTRON Rgk3
3L	7023078	3L_7023078_SNP [dm3] 3L_7029978_SNP [dm6]	A	C	8.828e^-5	0.801	INTRON Mp
2R	16657514	2R_16657514_SNP [dm3] 2R_20770009_SNP [dm6]	A	G	8.877e^-5	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8521122	3L_8521122_SNP [dm3] 3L_8528022_SNP [dm6]	G	C	8.931e^-5	0.801	UPSTREAM foi INTRON foi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3302398	2L_3302398_SNP [dm3] 2L_3302398_SNP [dm6]	A	T	8.952e^-5	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8172775	2R_8172775_SNP [dm3] 2R_12285270_SNP [dm6]	T	C	8.979e^-5	0.801	UPSTREAM CG42700 INTRON CG42700
X	4371983	X_4371983_SNP [dm3] X_4477950_SNP [dm6]	C	A	8.990e^-5	0.801	INTRON bi & 1 other
3L	7036530	3L_7036530_SNP [dm3] 3L_7043430_SNP [dm6]	T	C	9.038e^-5	0.801	INTRON Mp
X	22240945	X_22240945_SNP [dm3] X_22839109_SNP [dm6]	C	T	9.092e^-5	0.801	INTRON fog & 1 other
3R	6312640	3R_6312640_SNP [dm3] 3R_10486918_SNP [dm6]	C	T	9.104e^-5	0.801	INTERGENIC
3R	24562983	3R_24562983_SNP [dm3] 3R_28737261_SNP [dm6]	C	T	9.188e^-5	0.801	UTR_3_PRIME AstA-R2 DOWNSTREAM AstA-R2
3L	3229938	3L_3229938_SNP [dm3] 3L_3229938_SNP [dm6]	G	A	9.199e^-5	0.801	SYNONYMOUS_CODING CG11505	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19523752	2R_19523752_SNP [dm3] 2R_23636229_SNP [dm6]	T	C	9.272e^-5	0.801	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19523753	2R_19523753_SNP [dm3] 2R_23636230_SNP [dm6]	G	A	9.272e^-5	0.801	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7023063	3L_7023063_SNP [dm3] 3L_7029963_SNP [dm6]	C	A	9.279e^-5	0.801	INTRON Mp
3L	7023077	3L_7023077_SNP [dm3] 3L_7029977_SNP [dm6]	A	G	9.279e^-5	0.801	INTRON Mp
2R	11423130	2R_11423130_SNP [dm3] 2R_15535625_SNP [dm6]	T	C	9.284e^-5	0.801	SYNONYMOUS_CODING CG30471	TF binding site BDTNP1_TFBS_sna
2L	5147641	2L_5147641_SNP [dm3] 2L_5147641_SNP [dm6]	T	A	9.323e^-5	0.801	INTRON Msp300
2R	19010900	2R_19010900_SNP [dm3] 2R_23123377_SNP [dm6]	T	C	9.423e^-5	0.801	DOWNSTREAM Klp59C INTERGENIC
X	18050882	X_18050882_SNP [dm3] X_18156849_SNP [dm6]	A	C	9.488e^-5	0.801	INTRON Frq1
3L	3793680	3L_3793680_SNP [dm3] 3L_3793680_SNP [dm6]	A	G	9.578e^-5	0.801	INTRON CG32264
2L	7444884	2L_7444884_SNP [dm3] 2L_7444884_SNP [dm6]	T	C	9.590e^-5	0.801	DOWNSTREAM santa-maria INTRON CG5973
2R	11004262	2R_11004262_SNP [dm3] 2R_15116757_SNP [dm6]	C	A	9.703e^-5	0.801	INTRON chn	TF binding site BDTNP1_TFBS_dl
2L	7906346	2L_7906346_SNP [dm3] 2L_7906346_SNP [dm6]	C	T	9.801e^-5	0.801	INTRON Snoo
2R	16363009	2R_16363009_SNP [dm3] 2R_20475504_SNP [dm6]	A	G	9.872e^-5	0.801	INTRON CG12484
X	14854472	X_14854472_DEL [dm3] X_14960439_DEL [dm6]	TAGGAGTCTAT...	T	1.004e^-4	0.801	INTRON eag	TF binding site mE1_TFBS_bab1
2L	13460200	2L_13460200_SNP [dm3] 2L_13460200_SNP [dm6]	A	T	1.013e^-4	0.801	DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA
2R	16655608	2R_16655608_SNP [dm3] 2R_20768103_SNP [dm6]	T	C	1.017e^-4	0.801	DOWNSTREAM CR44665 INTERGENIC
2R	17174869	2R_17174869_SNP [dm3] 2R_21287364_SNP [dm6]	C	T	1.017e^-4	0.801	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2R	17174875	2R_17174875_SNP [dm3] 2R_21287370_SNP [dm6]	C	T	1.017e^-4	0.801	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2R	19519287	2R_19519287_INS [dm3] 2R_23631764_INS [dm6]	C	CC	1.023e^-4	0.801	UPSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3231658	3L_3231658_SNP [dm3] 3L_3231658_SNP [dm6]	C	A	1.027e^-4	0.801	NON_SYNONYMOUS_CODING CG11505	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17433324	X_17433324_INS [dm3] X_17539291_INS [dm6]	C	CCTCC	1.031e^-4	0.801	INTRON CG43658
X	14554789	X_14554789_SNP [dm3] X_14660756_SNP [dm6]	T	A	1.032e^-4	0.801	INTERGENIC
X	9592774	X_9592774_SNP [dm3] X_9698741_SNP [dm6]	G	A	1.032e^-4	0.801	INTERGENIC
2L	14276358	2L_14276358_SNP [dm3] 2L_14276358_SNP [dm6]	A	T	1.034e^-4	0.801	UPSTREAM CG32971 INTRON wb & 1 other
3L	1268052	3L_1268052_SNP [dm3] 3L_1268052_SNP [dm6]	T	G	1.043e^-4	0.801	INTRON CG9134
3L	10624044	3L_10624044_SNP [dm3] 3L_10630944_SNP [dm6]	A	T	1.043e^-4	0.801	UPSTREAM CG42536 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	9861850	2R_9861850_SNP [dm3] 2R_13974345_SNP [dm6]	G	A	1.044e^-4	0.801	NON_SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad
2L	14982567	2L_14982567_SNP [dm3] 2L_14982567_SNP [dm6]	T	A	1.044e^-4	0.801	INTRON mol
3L	10003641	3L_10003641_SNP [dm3] 3L_10010541_SNP [dm6]	C	T	1.046e^-4	0.801	INTRON dpr6
X	14854484	X_14854484_SNP [dm3] X_14960451_SNP [dm6]	A	C	1.052e^-4	0.801	INTRON eag	TF binding site mE1_TFBS_bab1
3L	17874465	3L_17874465_SNP [dm3] 3L_17881365_SNP [dm6]	C	T	1.053e^-4	0.801	SYNONYMOUS_CODING CG7408
3L	1268050	3L_1268050_SNP [dm3] 3L_1268050_SNP [dm6]	C	T	1.055e^-4	0.801	INTRON CG9134
2L	6165216	2L_6165216_SNP [dm3] 2L_6165216_SNP [dm6]	T	A	1.058e^-4	0.801	INTERGENIC
2L	9964565	2L_9964565_SNP [dm3] 2L_9964565_SNP [dm6]	G	A	1.066e^-4	0.801	NON_SYNONYMOUS_CODING Dref UPSTREAM CG5850
2L	13862886	2L_13862886_SNP [dm3] 2L_13862886_SNP [dm6]	T	C	1.068e^-4	0.801	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	24563045	3R_24563045_SNP [dm3] 3R_28737323_SNP [dm6]	A	G	1.071e^-4	0.801	UTR_3_PRIME AstA-R2 DOWNSTREAM AstA-R2
2R	18932273	2R_18932273_SNP [dm3] 2R_23044750_SNP [dm6]	G	A	1.075e^-4	0.801	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	23723175	3R_23723175_SNP [dm3] 3R_27897453_SNP [dm6]	A	G	1.079e^-4	0.801	INTRON CG34353
3R	25321157	3R_25321157_SNP [dm3] 3R_29495435_SNP [dm6]	A	C	1.081e^-4	0.801	INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	26460930	3R_26460930_SNP [dm3] 3R_30635208_SNP [dm6]	G	A	1.090e^-4	0.801	INTERGENIC
3L	14146136	3L_14146136_INS [dm3] 3L_14153036_INS [dm6]	A	AA	1.095e^-4	0.801	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	1587875	3L_1587875_SNP [dm3] 3L_1587875_SNP [dm6]	C	T	1.097e^-4	0.801	INTRON CG13917	TF binding site BDTNP1_TFBS_z
3R	25052904	3R_25052904_SNP [dm3] 3R_29227182_SNP [dm6]	C	G	1.106e^-4	0.801	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
2L	2256245	2L_2256245_SNP [dm3] 2L_2256245_SNP [dm6]	G	A	1.107e^-4	0.801	INTERGENIC
2R	12743857	2R_12743857_SNP [dm3] 2R_16856352_SNP [dm6]	C	T	1.109e^-4	0.801	UPSTREAM Fen1 & 1 other INTRON Dek	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	17359718	2R_17359718_SNP [dm3] 2R_21472213_SNP [dm6]	G	A	1.111e^-4	0.801	INTRON Sdc
2L	9942956	2L_9942956_SNP [dm3] 2L_9942956_SNP [dm6]	T	C	1.112e^-4	0.801	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619
3R	7150374	3R_7150374_SNP [dm3] 3R_11324652_SNP [dm6]	C	A	1.119e^-4	0.801	INTERGENIC
2R	17475887	2R_17475887_SNP [dm3] 2R_21588382_SNP [dm6]	G	C	1.122e^-4	0.801	INTERGENIC
2R	16655910	2R_16655910_SNP [dm3] 2R_20768405_SNP [dm6]	G	C	1.122e^-4	0.801	DOWNSTREAM CR44665 INTERGENIC
2L	3302372	2L_3302372_SNP [dm3] 2L_3302372_SNP [dm6]	T	A	1.124e^-4	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7906343	2L_7906343_SNP [dm3] 2L_7906343_SNP [dm6]	G	A	1.124e^-4	0.801	INTRON Snoo
2R	18703687	2R_18703687_SNP [dm3] 2R_22816182_SNP [dm6]	G	C	1.127e^-4	0.801	UPSTREAM CG30271 DOWNSTREAM stl INTERGENIC
X	13451798	X_13451798_SNP [dm3] X_13557765_SNP [dm6]	A	T	1.142e^-4	0.801	UTR_3_PRIME CG32631
X	14247040	X_14247040_SNP [dm3] X_14353007_SNP [dm6]	C	G	1.145e^-4	0.801	INTRON dpr8
2L	14405421	2L_14405421_SNP [dm3] 2L_14405421_SNP [dm6]	A	G	1.145e^-4	0.801	INTRON elB	TF binding site mE1_TFBS_cad
2R	13799327	2R_13799327_SNP [dm3] 2R_17911822_SNP [dm6]	C	T	1.153e^-4	0.801	INTRON Elk
2R	5652554	2R_5652554_SNP [dm3] 2R_9765049_SNP [dm6]	A	G	1.154e^-4	0.801	SYNONYMOUS_CODING trpl
2L	13115067	2L_13115067_SNP [dm3] 2L_13115067_SNP [dm6]	G	T	1.166e^-4	0.801	INTERGENIC
3R	20404147	3R_20404147_SNP [dm3] 3R_24578425_SNP [dm6]	C	T	1.167e^-4	0.801	UPSTREAM CG13624 INTRON CG13624
2R	11176233	2R_11176233_SNP [dm3] 2R_15288728_SNP [dm6]	C	A	1.172e^-4	0.801	INTRON Trpm
2R	11177178	2R_11177178_SNP [dm3] 2R_15289673_SNP [dm6]	C	A	1.172e^-4	0.801	INTRON Trpm
2R	11177188	2R_11177188_SNP [dm3] 2R_15289683_SNP [dm6]	G	A	1.172e^-4	0.801	INTRON Trpm
2R	19640758	2R_19640758_SNP [dm3] 2R_23753235_SNP [dm6]	T	C	1.175e^-4	0.801	UTR_3_PRIME CG5532 DOWNSTREAM CG9850 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9931776	3L_9931776_SNP [dm3] 3L_9938676_SNP [dm6]	A	T	1.191e^-4	0.801	INTRON CG34356
2L	9862245	2L_9862245_SNP [dm3] 2L_9862245_SNP [dm6]	G	T	1.193e^-4	0.801	INTRON nAChRalpha6
2L	12492468	2L_12492468_SNP [dm3] 2L_12492468_SNP [dm6]	C	T	1.195e^-4	0.801	UTR_5_PRIME bun INTRON bun
3L	14074874	3L_14074874_SNP [dm3] 3L_14081774_SNP [dm6]	C	T	1.204e^-4	0.801	SYNONYMOUS_CODING btl	TF binding site mE1_TFBS_cad
2R	8171694	2R_8171694_SNP [dm3] 2R_12284189_SNP [dm6]	G	A	1.206e^-4	0.801	INTRON CG42700
2L	9195575	2L_9195575_SNP [dm3] 2L_9195575_SNP [dm6]	A	C	1.210e^-4	0.801	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13768040	2L_13768040_SNP [dm3] 2L_13768040_SNP [dm6]	T	A	1.211e^-4	0.801	INTRON TM9SF4
2R	17415421	2R_17415421_DEL [dm3] 2R_21527916_DEL [dm6]	CT	C	1.213e^-4	0.801	INTRON Egfr
X	14554771	X_14554771_SNP [dm3] X_14660738_SNP [dm6]	G	A	1.216e^-4	0.801	INTERGENIC
X	4793576	X_4793576_SNP [dm3] X_4899543_SNP [dm6]	A	G	1.222e^-4	0.801	INTRON CG42594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	924347	2L_924347_DEL [dm3] 2L_924347_DEL [dm6]	TC	T	1.230e^-4	0.801	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2L	923517	2L_923517_SNP [dm3] 2L_923517_SNP [dm6]	A	G	1.231e^-4	0.801	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	923567	2L_923567_SNP [dm3] 2L_923567_SNP [dm6]	G	C	1.231e^-4	0.801	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8729660	3L_8729660_SNP [dm3] 3L_8736560_SNP [dm6]	G	A	1.236e^-4	0.801	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
3L	3252135	3L_3252135_SNP [dm3] 3L_3252135_SNP [dm6]	A	T	1.238e^-4	0.801	EXON CR43626
2L	14511668	2L_14511668_SNP [dm3] 2L_14511668_SNP [dm6]	C	T	1.243e^-4	0.801	EXON CR45693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	11295617	2L_11295617_DEL [dm3] 2L_11295617_DEL [dm6]	GCCTAAG	G	1.246e^-4	0.801	INTERGENIC
3R	24346974	3R_24346974_SNP [dm3] 3R_28521252_SNP [dm6]	A	G	1.248e^-4	0.801	SYNONYMOUS_CODING Ppn UPSTREAM CG31051
X	22241130	X_22241130_SNP [dm3] X_22839294_SNP [dm6]	C	G	1.253e^-4	0.801	INTRON fog & 1 other
2R	16655888	2R_16655888_SNP [dm3] 2R_20768383_SNP [dm6]	C	T	1.254e^-4	0.801	DOWNSTREAM CR44665 INTERGENIC
3L	16707698	3L_16707698_SNP [dm3] 3L_16714598_SNP [dm6]	G	C	1.267e^-4	0.801	INTRON Dab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	14228092	2L_14228092_SNP [dm3] 2L_14228092_SNP [dm6]	C	T	1.275e^-4	0.801	INTRON Dyrk2
2L	2257130	2L_2257130_SNP [dm3] 2L_2257130_SNP [dm6]	G	C	1.278e^-4	0.801	DOWNSTREAM CR44787 INTERGENIC
3R	23422764	3R_23422764_SNP [dm3] 3R_27597042_SNP [dm6]	G	T	1.284e^-4	0.801	UPSTREAM CG5639 DOWNSTREAM dsd INTERGENIC
3R	12222573	3R_12222573_SNP [dm3] 3R_16396851_SNP [dm6]	G	C	1.289e^-4	0.801	INTRON ss	regulatory region REDfly_CRMs
2L	2607543	2L_2607543_SNP [dm3] 2L_2607543_SNP [dm6]	A	G	1.292e^-4	0.801	INTERGENIC
2L	1246067	2L_1246067_SNP [dm3] 2L_1246067_SNP [dm6]	G	C	1.292e^-4	0.801	INTERGENIC
2L	1246863	2L_1246863_SNP [dm3] 2L_1246863_SNP [dm6]	T	A	1.292e^-4	0.801	INTERGENIC
2L	16944050	2L_16944050_SNP [dm3] 2L_16944050_SNP [dm6]	C	T	1.295e^-4	0.801	DOWNSTREAM CR43053 INTERGENIC
2R	19328606	2R_19328606_SNP [dm3] 2R_23441083_SNP [dm6]	G	A	1.296e^-4	0.801	UPSTREAM Or59a INTERGENIC
2L	2421833	2L_2421833_SNP [dm3] 2L_2421833_SNP [dm6]	C	T	1.298e^-4	0.801	NON_SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1865866	2L_1865866_SNP [dm3] 2L_1865866_SNP [dm6]	A	G	1.299e^-4	0.801	INTRON CG31663
3L	4084080	3L_4084080_SNP [dm3] 3L_4084080_SNP [dm6]	G	C	1.310e^-4	0.801	INTRON Gad1
2L	4292585	2L_4292585_SNP [dm3] 2L_4292585_SNP [dm6]	C	T	1.310e^-4	0.801	INTRON tutl	TF binding site mE1_TFBS_chinmo
3L	4090165	3L_4090165_SNP [dm3] 3L_4090165_SNP [dm6]	A	C	1.311e^-4	0.801	INTRON CG14989
3R	22280909	3R_22280909_SNP [dm3] 3R_26455187_SNP [dm6]	T	C	1.315e^-4	0.801	DOWNSTREAM Pdf & 2 others INTERGENIC
X	15279131	X_15279131_SNP [dm3] X_15385098_SNP [dm6]	C	T	1.318e^-4	0.801	UTR_5_PRIME CG9164 DOWNSTREAM Cngl
3L	13468330	3L_13468330_SNP [dm3] 3L_13475230_SNP [dm6]	T	C	1.319e^-4	0.801	UPSTREAM CG10089 INTERGENIC
3L	15596946	3L_15596946_SNP [dm3] 3L_15603846_SNP [dm6]	G	C	1.323e^-4	0.801	DOWNSTREAM RhoGAP71E INTRON RhoGAP71E
2L	931011	2L_931011_SNP [dm3] 2L_931011_SNP [dm6]	C	G	1.323e^-4	0.801	INTRON CG4341
2R	16655891	2R_16655891_SNP [dm3] 2R_20768386_SNP [dm6]	T	C	1.328e^-4	0.801	DOWNSTREAM CR44665 INTERGENIC
X	3405150	X_3405150_SNP [dm3] X_3511117_SNP [dm6]	A	T	1.330e^-4	0.801	UTR_3_PRIME CG32791 DOWNSTREAM CG32791 INTRON CR44999
X	14548597	X_14548597_SNP [dm3] X_14654564_SNP [dm6]	T	C	1.342e^-4	0.801	UPSTREAM NetA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	6847891	3L_6847891_SNP [dm3] 3L_6854791_SNP [dm6]	T	A	1.357e^-4	0.801	INTERGENIC
2L	13685761	2L_13685761_SNP [dm3] 2L_13685761_SNP [dm6]	A	T	1.366e^-4	0.801	INTRON CG31814
3L	8252474	3L_8252474_SNP [dm3] 3L_8259374_SNP [dm6]	G	A	1.369e^-4	0.801	INTRON Dscam4
X	19567541	X_19567541_SNP [dm3] X_19673508_SNP [dm6]	T	C	1.376e^-4	0.801	INTRON et	TF binding site mE1_TFBS_cad
X	15644338	X_15644338_SNP [dm3] X_15750305_SNP [dm6]	A	C	1.378e^-4	0.801	SYNONYMOUS_CODING CG8239	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	286036	X_286036_SNP [dm3] X_392003_SNP [dm6]	G	A	1.386e^-4	0.801	INTRON CG32816 EXON CR44753	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16656382	2R_16656382_SNP [dm3] 2R_20768877_SNP [dm6]	T	C	1.394e^-4	0.801	INTERGENIC
3L	12017038	3L_12017038_INS [dm3] 3L_12023938_INS [dm6]	T	TCGTT	1.412e^-4	0.801	INTRON rols
X	19138130	X_19138130_SNP [dm3] X_19244097_SNP [dm6]	C	T	1.414e^-4	0.801	NON_SYNONYMOUS_CODING CG7889	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13741609	2L_13741609_SNP [dm3] 2L_13741609_SNP [dm6]	G	A	1.416e^-4	0.801	INTERGENIC
2L	931000	2L_931000_SNP [dm3] 2L_931000_SNP [dm6]	A	T	1.420e^-4	0.801	INTRON CG4341
3L	6338609	3L_6338609_SNP [dm3] 3L_6345509_SNP [dm6]	T	A	1.429e^-4	0.801	INTRON CG13300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	4043949	2L_4043949_SNP [dm3] 2L_4043949_SNP [dm6]	T	C	1.438e^-4	0.801	INTRON ed
2R	19184069	2R_19184069_DEL [dm3] 2R_23296546_DEL [dm6]	AC	A	1.443e^-4	0.801	INTERGENIC
3L	11066273	3L_11066273_SNP [dm3] 3L_11073173_SNP [dm6]	A	G	1.454e^-4	0.801	UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239
3R	18680318	3R_18680318_SNP [dm3] 3R_22854596_SNP [dm6]	A	G	1.464e^-4	0.801	INTERGENIC
2L	3795060	2L_3795060_SNP [dm3] 2L_3795060_SNP [dm6]	G	A	1.469e^-4	0.801	NON_SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
2L	15161274	2L_15161274_SNP [dm3] 2L_15161274_SNP [dm6]	T	C	1.479e^-4	0.801	DOWNSTREAM CG4168 & 1 other INTERGENIC
3L	4308391	3L_4308391_SNP [dm3] 3L_4308391_SNP [dm6]	T	A	1.486e^-4	0.801	UPSTREAM dyl INTERGENIC
3L	3486298	3L_3486298_SNP [dm3] 3L_3486298_SNP [dm6]	C	T	1.487e^-4	0.801	INTRON CG42324
2R	4414274	2R_4414274_DEL [dm3] 2R_8526769_DEL [dm6]	GTGC	G	1.488e^-4	0.801	INTRON mtt
3L	14487240	3L_14487240_SNP [dm3] 3L_14494140_SNP [dm6]	G	A	1.488e^-4	0.801	INTRON bbg
2L	669274	2L_669274_SNP [dm3] 2L_669274_SNP [dm6]	T	C	1.499e^-4	0.801	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	9243186	2L_9243186_SNP [dm3] 2L_9243186_SNP [dm6]	G	A	1.499e^-4	0.801	SPLICE_SITE_REGION tai INTRON tai	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19534637	3R_19534637_SNP [dm3] 3R_23708915_SNP [dm6]	T	C	1.508e^-4	0.801	DOWNSTREAM CG31414 INTERGENIC
2R	11176106	2R_11176106_SNP [dm3] 2R_15288601_SNP [dm6]	T	C	1.509e^-4	0.801	INTRON Trpm
2R	11176109	2R_11176109_SNP [dm3] 2R_15288604_SNP [dm6]	A	G	1.509e^-4	0.801	INTRON Trpm
X	15482553	X_15482553_SNP [dm3] X_15588520_SNP [dm6]	G	A	1.511e^-4	0.801	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12017051	3L_12017051_SNP [dm3] 3L_12023951_SNP [dm6]	A	G	1.511e^-4	0.801	INTRON rols
2R	16656326	2R_16656326_SNP [dm3] 2R_20768821_SNP [dm6]	G	A	1.513e^-4	0.801	DOWNSTREAM CR44665 INTERGENIC
2R	16656336	2R_16656336_SNP [dm3] 2R_20768831_SNP [dm6]	C	T	1.513e^-4	0.801	DOWNSTREAM CR44665 INTERGENIC
3L	18930346	3L_18930346_SNP [dm3] 3L_18937246_SNP [dm6]	C	T	1.513e^-4	0.801	INTRON CG32204
X	3170377	X_3170377_SNP [dm3] X_3276344_SNP [dm6]	T	C	1.518e^-4	0.801	INTRON dnc
3L	12283462	3L_12283462_SNP [dm3] 3L_12290362_SNP [dm6]	A	T	1.526e^-4	0.801	UPSTREAM CR45658 DOWNSTREAM CG4328 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	9526648	3L_9526648_SNP [dm3] 3L_9533548_SNP [dm6]	T	A	1.527e^-4	0.801	INTERGENIC
X	14548571	X_14548571_SNP [dm3] X_14654538_SNP [dm6]	C	A	1.536e^-4	0.801	UPSTREAM NetA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	16745498	3L_16745498_SNP [dm3] 3L_16752398_SNP [dm6]	T	A	1.543e^-4	0.801	INTERGENIC
2L	15161446	2L_15161446_SNP [dm3] 2L_15161446_SNP [dm6]	C	T	1.544e^-4	0.801	DOWNSTREAM CG4168 & 1 other INTERGENIC
2R	20200693	2R_20200693_SNP [dm3] 2R_24313170_SNP [dm6]	T	G	1.549e^-4	0.801	DOWNSTREAM betaTub60D INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	20216608	2R_20216608_SNP [dm3] 2R_24329085_SNP [dm6]	A	C	1.550e^-4	0.801	UPSTREAM CR44810 INTRON CR44810 EXON CR44810	TF binding site mE1_TFBS_Trl
3L	18040842	3L_18040842_INS [dm3] 3L_18047742_INS [dm6]	T	TA	1.553e^-4	0.801	INTRON Eip75B	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
X	19320370	X_19320370_SNP [dm3] X_19426337_SNP [dm6]	C	A	1.557e^-4	0.801	INTRON kek5
2R	8329118	2R_8329118_SNP [dm3] 2R_12441613_SNP [dm6]	C	A	1.561e^-4	0.801	UPSTREAM CG30334 INTRON Dyb
2R	4474625	2R_4474625_SNP [dm3] 2R_8587120_SNP [dm6]	A	T	1.561e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2974280	3L_2974280_SNP [dm3] 3L_2974280_SNP [dm6]	T	C	1.563e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3404435	X_3404435_SNP [dm3] X_3510402_SNP [dm6]	G	A	1.565e^-4	0.801	UTR_3_PRIME CG32791 DOWNSTREAM CG32791 INTRON CR44999
2L	13685732	2L_13685732_SNP [dm3] 2L_13685732_SNP [dm6]	C	G	1.568e^-4	0.801	INTRON CG31814
X	14554799	X_14554799_SNP [dm3] X_14660766_SNP [dm6]	G	A	1.570e^-4	0.801	INTERGENIC
3R	16531497	3R_16531497_SNP [dm3] 3R_20705775_SNP [dm6]	T	G	1.571e^-4	0.801	INTRON Oamb
3L	3227949	3L_3227949_SNP [dm3] 3L_3227949_SNP [dm6]	C	A	1.571e^-4	0.801	SYNONYMOUS_CODING CG11505	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7752606	3L_7752606_SNP [dm3] 3L_7759506_SNP [dm6]	C	T	1.577e^-4	0.801	UPSTREAM Hn DOWNSTREAM CG32373 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	10445163	2R_10445163_SNP [dm3] 2R_14557658_SNP [dm6]	T	G	1.579e^-4	0.801	INTRON ttv	TF binding site BDTNP1_TFBS_sna
3R	27129715	3R_27129715_SNP [dm3] 3R_31303993_SNP [dm6]	A	G	1.584e^-4	0.801	SYNONYMOUS_CODING CG11340	TF binding site mE1_TFBS_sens
3L	2729840	3L_2729840_SNP [dm3] 3L_2729840_SNP [dm6]	G	A	1.593e^-4	0.801	INTRON Mrtf
3L	15164369	3L_15164369_SNP [dm3] 3L_15171269_SNP [dm6]	T	A	1.598e^-4	0.801	INTERGENIC
2L	14276559	2L_14276559_SNP [dm3] 2L_14276559_SNP [dm6]	T	A	1.603e^-4	0.801	UPSTREAM CG32971 INTRON wb & 1 other
3L	16708129	3L_16708129_SNP [dm3] 3L_16715029_SNP [dm6]	A	T	1.610e^-4	0.801	INTRON Dab
2L	3302213	2L_3302213_SNP [dm3] 2L_3302213_SNP [dm6]	T	C	1.613e^-4	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7981971	X_7981971_SNP [dm3] X_8087938_SNP [dm6]	A	G	1.613e^-4	0.801	UTR_3_PRIME Ubc-E2H UPSTREAM CG2256 DOWNSTREAM Ubc-E2H
3L	15643042	3L_15643042_SNP [dm3] 3L_15649942_SNP [dm6]	A	T	1.614e^-4	0.801	UTR_5_PRIME Eig71Eb UPSTREAM Eig71Ea & 1 other DOWNSTREAM CG43083
2L	3302134	2L_3302134_SNP [dm3] 2L_3302134_SNP [dm6]	G	A	1.617e^-4	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7971077	X_7971077_SNP [dm3] X_8077044_SNP [dm6]	C	G	1.617e^-4	0.801	SYNONYMOUS_CODING CG1571	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14246410	X_14246410_INS [dm3] X_14352377_INS [dm6]	A	AGCAGCA	1.622e^-4	0.801	INTRON dpr8
3L	16647335	3L_16647335_SNP [dm3] 3L_16654235_SNP [dm6]	A	C	1.623e^-4	0.801	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3R	13555910	3R_13555910_SNP [dm3] 3R_17730188_SNP [dm6]	G	C	1.638e^-4	0.801	SYNONYMOUS_CODING Lgr1
2R	6508172	2R_6508172_SNP [dm3] 2R_10620667_SNP [dm6]	T	C	1.640e^-4	0.801	INTRON CG11883
3L	18575921	3L_18575921_SNP [dm3] 3L_18582821_SNP [dm6]	A	G	1.643e^-4	0.801	UPSTREAM CR45435 INTERGENIC
3L	9162428	3L_9162428_DEL [dm3] 3L_9169328_DEL [dm6]	TCT	T	1.643e^-4	0.801	INTRON Rdl
3L	5468206	3L_5468206_SNP [dm3] 3L_5475106_SNP [dm6]	C	A	1.672e^-4	0.801	INTERGENIC
3R	22863613	3R_22863613_SNP [dm3] 3R_27037891_SNP [dm6]	A	G	1.673e^-4	0.801	INTRON RYa-R	TF binding site mE1_TFBS_cad
3L	10781573	3L_10781573_SNP [dm3] 3L_10788473_SNP [dm6]	G	T	1.675e^-4	0.801	UPSTREAM CR44545 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	14548570	X_14548570_SNP [dm3] X_14654537_SNP [dm6]	T	G	1.679e^-4	0.801	UPSTREAM NetA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	17043690	2R_17043690_SNP [dm3] 2R_21156185_SNP [dm6]	C	T	1.693e^-4	0.801	INTRON CG30389
2R	18983716	2R_18983716_SNP [dm3] 2R_23096193_SNP [dm6]	A	C	1.695e^-4	0.801	INTERGENIC
X	2140945	X_2140945_SNP [dm3] X_2246912_SNP [dm6]	G	A	1.696e^-4	0.801	NON_SYNONYMOUS_CODING Or2a DOWNSTREAM fs_1_K10 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19000982	2R_19000982_SNP [dm3] 2R_23113459_SNP [dm6]	G	T	1.696e^-4	0.801	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18930434	3L_18930434_SNP [dm3] 3L_18937334_SNP [dm6]	C	G	1.702e^-4	0.801	INTRON CG32204
3R	2196209	3R_2196209_SNP [dm3] 3R_6370487_SNP [dm6]	A	G	1.703e^-4	0.801	NON_SYNONYMOUS_CODING CG10286 DOWNSTREAM CG1041	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	2198260	3R_2198260_SNP [dm3] 3R_6372538_SNP [dm6]	G	A	1.703e^-4	0.801	SYNONYMOUS_CODING CG1041
3L	8467973	3L_8467973_SNP [dm3] 3L_8474873_SNP [dm6]	G	A	1.708e^-4	0.801	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13954266	2L_13954266_SNP [dm3] 2L_13954266_SNP [dm6]	G	A	1.712e^-4	0.801	INTRON Ance-3
X	18050654	X_18050654_SNP [dm3] X_18156621_SNP [dm6]	T	C	1.715e^-4	0.801	INTRON Frq1
3L	2351005	3L_2351005_SNP [dm3] 3L_2351005_SNP [dm6]	A	G	1.716e^-4	0.801	INTERGENIC
2L	14276372	2L_14276372_SNP [dm3] 2L_14276372_SNP [dm6]	T	C	1.717e^-4	0.801	UPSTREAM CG32971 INTRON wb & 1 other
2R	11780415	2R_11780415_SNP [dm3] 2R_15892910_SNP [dm6]	T	C	1.724e^-4	0.801	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5463564	X_5463564_SNP [dm3] X_5569531_SNP [dm6]	T	C	1.732e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	14303051	3R_14303051_DEL [dm3] 3R_18477329_DEL [dm6]	TT	T	1.734e^-4	0.801	INTRON fru
2R	6227616	2R_6227616_SNP [dm3] 2R_10340111_SNP [dm6]	G	A	1.734e^-4	0.801	INTRON CG42732
2L	8179742	2L_8179742_SNP [dm3] 2L_8179742_SNP [dm6]	C	T	1.736e^-4	0.801	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad
3L	17441251	3L_17441251_SNP [dm3] 3L_17448151_SNP [dm6]	A	G	1.743e^-4	0.801	INTRON CG18265
2R	15075442	2R_15075442_SNP [dm3] 2R_19187937_SNP [dm6]	T	A	1.759e^-4	0.801	INTRON hppy	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19002487	2R_19002487_SNP [dm3] 2R_23114964_SNP [dm6]	G	T	1.759e^-4	0.801	UPSTREAM CR44782 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4632155	3L_4632155_SNP [dm3] 3L_4632155_SNP [dm6]	T	C	1.767e^-4	0.801	INTRON axo
3R	18680307	3R_18680307_SNP [dm3] 3R_22854585_SNP [dm6]	G	A	1.777e^-4	0.801	INTERGENIC
2L	14278505	2L_14278505_SNP [dm3] 2L_14278505_SNP [dm6]	G	A	1.781e^-4	0.801	SYNONYMOUS_CODING wb DOWNSTREAM CG32971	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2606837	2L_2606837_SNP [dm3] 2L_2606837_SNP [dm6]	G	A	1.786e^-4	0.801	INTERGENIC
2R	12008343	2R_12008343_SNP [dm3] 2R_16120838_SNP [dm6]	C	T	1.786e^-4	0.801	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
2L	3302234	2L_3302234_SNP [dm3] 2L_3302234_SNP [dm6]	A	G	1.791e^-4	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11162577	2R_11162577_SNP [dm3] 2R_15275072_SNP [dm6]	T	C	1.792e^-4	0.801	SYNONYMOUS_CODING Trpm
2R	4416148	2R_4416148_SNP [dm3] 2R_8528643_SNP [dm6]	A	C	1.805e^-4	0.801	INTRON mtt
3L	12139450	3L_12139450_SNP [dm3] 3L_12146350_SNP [dm6]	C	T	1.807e^-4	0.801	UPSTREAM Nrx-IV & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8734618	3L_8734618_SNP [dm3] 3L_8741518_SNP [dm6]	A	C	1.807e^-4	0.801	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8734658	3L_8734658_SNP [dm3] 3L_8741558_SNP [dm6]	A	G	1.807e^-4	0.801	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8869953	2R_8869953_SNP [dm3] 2R_12982448_SNP [dm6]	C	T	1.816e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17151409	2R_17151409_SNP [dm3] 2R_21263904_SNP [dm6]	G	A	1.817e^-4	0.801	DOWNSTREAM CG30391 INTRON Rgk3
2R	17797674	2R_17797674_SNP [dm3] 2R_21910169_SNP [dm6]	G	A	1.826e^-4	0.801	INTRON Fili
2L	3586879	2L_3586879_SNP [dm3] 2L_3586879_SNP [dm6]	C	G	1.836e^-4	0.801	INTERGENIC
X	14861609	X_14861609_SNP [dm3] X_14967576_SNP [dm6]	A	C	1.842e^-4	0.801	INTRON eag
X	10142484	X_10142484_SNP [dm3] X_10248451_SNP [dm6]	T	G	1.848e^-4	0.801	INTRON Hk
X	5382261	X_5382261_SNP [dm3] X_5488228_SNP [dm6]	G	A	1.855e^-4	0.801	INTRON SPR
3R	22168414	3R_22168414_SNP [dm3] 3R_26342692_SNP [dm6]	A	G	1.870e^-4	0.801	INTRON CG33970
3R	22168418	3R_22168418_INS [dm3] 3R_26342696_INS [dm6]	A	ACGGCT	1.870e^-4	0.801	INTRON CG33970
3L	8820586	3L_8820586_SNP [dm3] 3L_8827486_SNP [dm6]	T	G	1.881e^-4	0.801	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11297133	2L_11297133_SNP [dm3] 2L_11297133_SNP [dm6]	C	T	1.887e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	20200688	2R_20200688_SNP [dm3] 2R_24313165_SNP [dm6]	C	G	1.892e^-4	0.801	DOWNSTREAM betaTub60D INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	19131615	2R_19131615_SNP [dm3] 2R_23244092_SNP [dm6]	A	G	1.897e^-4	0.801	UTR_3_PRIME yip3
3L	16647337	3L_16647337_SNP [dm3] 3L_16654237_SNP [dm6]	A	T	1.898e^-4	0.801	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
X	12203995	X_12203995_SNP [dm3] X_12309962_SNP [dm6]	T	G	1.908e^-4	0.801	INTRON Ten-a
2L	5213639	2L_5213639_SNP [dm3] 2L_5213639_SNP [dm6]	G	C	1.911e^-4	0.801	NON_SYNONYMOUS_CODING CG7742 SPLICE_SITE_REGION CG7742	TF binding site mE1_TFBS_cad
3L	7758684	3L_7758684_SNP [dm3] 3L_7765584_SNP [dm6]	T	C	1.912e^-4	0.801	SYNONYMOUS_CODING Clk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16707626	3L_16707626_SNP [dm3] 3L_16714526_SNP [dm6]	T	A	1.913e^-4	0.801	INTRON Dab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	1268282	3L_1268282_SNP [dm3] 3L_1268282_SNP [dm6]	G	A	1.922e^-4	0.801	INTRON CG9134
3L	1268286	3L_1268286_SNP [dm3] 3L_1268286_SNP [dm6]	A	T	1.922e^-4	0.801	INTRON CG9134
3R	12088823	3R_12088823_SNP [dm3] 3R_16263101_SNP [dm6]	C	T	1.924e^-4	0.801	INTRON bor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7511953	2L_7511953_SNP [dm3] 2L_7511953_SNP [dm6]	T	C	1.924e^-4	0.801	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	2162684	2L_2162684_SNP [dm3] 2L_2162684_SNP [dm6]	C	T	1.928e^-4	0.801	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	6813668	2R_6813668_SNP [dm3] 2R_10926163_SNP [dm6]	C	G	1.928e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	923450	2L_923450_SNP [dm3] 2L_923450_SNP [dm6]	T	A	1.934e^-4	0.801	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13264737	2R_13264737_SNP [dm3] 2R_17377232_SNP [dm6]	T	C	1.940e^-4	0.801	UTR_3_PRIME mbl
3L	9526717	3L_9526717_SNP [dm3] 3L_9533617_SNP [dm6]	A	C	1.953e^-4	0.801	INTERGENIC
2R	8387738	2R_8387738_SNP [dm3] 2R_12500233_SNP [dm6]	A	G	1.958e^-4	0.801	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10580590	2L_10580590_SNP [dm3] 2L_10580590_SNP [dm6]	C	T	1.960e^-4	0.801	DOWNSTREAM CG34161 & 1 other INTRON Trim9
3L	1588016	3L_1588016_SNP [dm3] 3L_1588016_SNP [dm6]	T	C	1.963e^-4	0.801	INTRON CG13917
2L	2090099	2L_2090099_SNP [dm3] 2L_2090099_SNP [dm6]	T	C	1.968e^-4	0.801	INTRON dpr3	TF binding site mE1_TFBS_chinmo
3L	321019	3L_321019_SNP [dm3] 3L_321019_SNP [dm6]	G	A	1.971e^-4	0.801	DOWNSTREAM CG32344 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
2L	1245028	2L_1245028_SNP [dm3] 2L_1245028_SNP [dm6]	G	A	1.974e^-4	0.801	INTERGENIC
3L	2399311	3L_2399311_SNP [dm3] 3L_2399311_SNP [dm6]	G	A	1.989e^-4	0.801	INTRON CG45186
3R	12088547	3R_12088547_SNP [dm3] 3R_16262825_SNP [dm6]	C	G	1.997e^-4	0.801	SYNONYMOUS_CODING bor	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10571474	2R_10571474_SNP [dm3] 2R_14683969_SNP [dm6]	G	T	2.000e^-4	0.801	INTRON mspo
3L	7597895	3L_7597895_SNP [dm3] 3L_7604795_SNP [dm6]	T	C	2.001e^-4	0.801	UPSTREAM CG33275 INTRON CG33275
3L	1268297	3L_1268297_SNP [dm3] 3L_1268297_SNP [dm6]	A	T	2.004e^-4	0.801	INTRON CG9134
3L	7125863	3L_7125863_SNP [dm3] 3L_7132763_SNP [dm6]	T	C	2.010e^-4	0.801	INTRON Dbi	TF binding site BDTNP1_TFBS_da
2R	4094991	2R_4094991_SNP [dm3] 2R_8207486_SNP [dm6]	A	G	2.014e^-4	0.801	INTRON LRP1
2R	17261347	2R_17261347_DEL [dm3] 2R_21373842_DEL [dm6]	CC	C	2.018e^-4	0.801	INTRON cv-2
3L	6694683	3L_6694683_SNP [dm3] 3L_6701583_SNP [dm6]	G	A	2.019e^-4	0.801	INTRON SP1173
2L	19828650	2L_19828650_SNP [dm3] 2L_19828650_SNP [dm6]	A	G	2.019e^-4	0.801	SYNONYMOUS_CODING sick UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad
3R	22168421	3R_22168421_SNP [dm3] 3R_26342699_SNP [dm6]	G	C	2.023e^-4	0.801	INTRON CG33970
X	17171016	X_17171016_SNP [dm3] X_17276983_SNP [dm6]	C	T	2.024e^-4	0.801	INTRON f
3R	7279643	3R_7279643_SNP [dm3] 3R_11453921_SNP [dm6]	C	G	2.042e^-4	0.801	START_GAINED PGRP-LB UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other	TF binding site mE1_TFBS_chinmo
3L	743967	3L_743967_SNP [dm3] 3L_743967_SNP [dm6]	A	C	2.042e^-4	0.801	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13976881	3R_13976881_SNP [dm3] 3R_18151159_SNP [dm6]	A	G	2.047e^-4	0.801	UPSTREAM CG14316 INTERGENIC
2L	9965343	2L_9965343_SNP [dm3] 2L_9965343_SNP [dm6]	T	G	2.047e^-4	0.801	INTRON Dref	TF binding site mE1_TFBS_sens
2R	12744588	2R_12744588_SNP [dm3] 2R_16857083_SNP [dm6]	C	G	2.052e^-4	0.801	UPSTREAM snoRNA:Dek-a INTRON Dek	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	22245576	X_22245576_INS [dm3] X_22843740_INS [dm6]	A	AA	2.058e^-4	0.801	INTRON fog & 1 other
X	7960964	X_7960964_SNP [dm3] X_8066931_SNP [dm6]	C	G	2.061e^-4	0.801	INTRON mys
2L	391220	2L_391220_SNP [dm3] 2L_391220_SNP [dm6]	A	T	2.068e^-4	0.801	INTERGENIC
X	13872709	X_13872709_SNP [dm3] X_13978676_SNP [dm6]	G	A	2.068e^-4	0.801	INTRON mamo
3L	769882	3L_769882_SNP [dm3] 3L_769882_SNP [dm6]	G	C	2.069e^-4	0.801	UPSTREAM tRNA:CR32481 DOWNSTREAM tRNA:CR32480 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17740236	3L_17740236_SNP [dm3] 3L_17747136_SNP [dm6]	A	T	2.079e^-4	0.801	UPSTREAM CG6034 INTRON Ccn
2L	3767358	2L_3767358_SNP [dm3] 2L_3767358_SNP [dm6]	A	T	2.084e^-4	0.801	UPSTREAM mir-1004 INTRON CG43707
2L	7906479	2L_7906479_SNP [dm3] 2L_7906479_SNP [dm6]	A	T	2.086e^-4	0.801	INTRON Snoo
3L	13465497	3L_13465497_SNP [dm3] 3L_13472397_SNP [dm6]	G	T	2.086e^-4	0.801	INTRON CG10089
3R	5146840	3R_5146840_SNP [dm3] 3R_9321118_SNP [dm6]	C	A	2.092e^-4	0.801	UPSTREAM HP1e INTRON CG8861
3L	8899659	3L_8899659_SNP [dm3] 3L_8906559_SNP [dm6]	C	T	2.092e^-4	0.801	SYNONYMOUS_CODING mfr UTR_3_PRIME mfr
2L	7444879	2L_7444879_SNP [dm3] 2L_7444879_SNP [dm6]	C	T	2.095e^-4	0.801	DOWNSTREAM santa-maria INTRON CG5973
3R	24480791	3R_24480791_SNP [dm3] 3R_28655069_SNP [dm6]	A	G	2.096e^-4	0.801	INTERGENIC
3R	25107393	3R_25107393_SNP [dm3] 3R_29281671_SNP [dm6]	G	A	2.098e^-4	0.801	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	25107395	3R_25107395_SNP [dm3] 3R_29281673_SNP [dm6]	G	A	2.098e^-4	0.801	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2R	16657837	2R_16657837_SNP [dm3] 2R_20770332_SNP [dm6]	T	A	2.104e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4371942	X_4371942_SNP [dm3] X_4477909_SNP [dm6]	G	T	2.105e^-4	0.801	INTRON bi & 1 other
X	10566658	X_10566658_SNP [dm3] X_10672625_SNP [dm6]	C	A	2.109e^-4	0.801	SYNONYMOUS_CODING CG12637 INTRON X11Lbeta
X	18451039	X_18451039_SNP [dm3] X_18557006_SNP [dm6]	C	T	2.110e^-4	0.801	INTRON Bx
X	3729801	X_3729801_SNP [dm3] X_3835768_SNP [dm6]	G	C	2.120e^-4	0.801	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14292929	2L_14292929_SNP [dm3] 2L_14292929_SNP [dm6]	C	A	2.127e^-4	0.801	DOWNSTREAM CR43640 INTRON wb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9101922	3R_9101922_SNP [dm3] 3R_13276200_SNP [dm6]	T	C	2.128e^-4	0.801	INTERGENIC
X	1573959	X_1573959_SNP [dm3] X_1679926_SNP [dm6]	C	A	2.128e^-4	0.801	DOWNSTREAM CG32809 INTRON CG32809
3L	8766320	3L_8766320_SNP [dm3] 3L_8773220_SNP [dm6]	G	T	2.128e^-4	0.801	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3L	7126018	3L_7126018_SNP [dm3] 3L_7132918_SNP [dm6]	G	A	2.129e^-4	0.801	INTRON Dbi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
X	286373	X_286373_SNP [dm3] X_392340_SNP [dm6]	C	A	2.132e^-4	0.801	INTRON CG32816 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9942998	2L_9942998_SNP [dm3] 2L_9942998_SNP [dm6]	A	G	2.136e^-4	0.801	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619
2L	14453941	2L_14453941_SNP [dm3] 2L_14453941_SNP [dm6]	A	C	2.138e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19640766	2R_19640766_SNP [dm3] 2R_23753243_SNP [dm6]	C	A	2.149e^-4	0.801	UTR_3_PRIME CG5532 DOWNSTREAM CG9850 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	7752595	3L_7752595_SNP [dm3] 3L_7759495_SNP [dm6]	G	C	2.160e^-4	0.801	UPSTREAM Hn DOWNSTREAM CG32373 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	14548567	X_14548567_SNP [dm3] X_14654534_SNP [dm6]	G	A	2.165e^-4	0.801	UPSTREAM NetA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	17699355	3L_17699355_SNP [dm3] 3L_17706255_SNP [dm6]	G	A	2.165e^-4	0.801	INTRON Ccn
2L	9427387	2L_9427387_SNP [dm3] 2L_9427387_SNP [dm6]	C	T	2.167e^-4	0.801	SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847
X	16077561	X_16077561_SNP [dm3] X_16183528_SNP [dm6]	T	C	2.174e^-4	0.801	INTERGENIC
2L	7332906	2L_7332906_SNP [dm3] 2L_7332906_SNP [dm6]	T	A	2.174e^-4	0.801	UPSTREAM Wnt6 INTERGENIC
X	3170372	X_3170372_SNP [dm3] X_3276339_SNP [dm6]	C	T	2.177e^-4	0.801	INTRON dnc
2L	923930	2L_923930_SNP [dm3] 2L_923930_SNP [dm6]	C	T	2.184e^-4	0.801	INTRON CG4341	TF binding site mE1_TFBS_chinmo
2R	20192251	2R_20192251_SNP [dm3] 2R_24304728_SNP [dm6]	G	A	2.186e^-4	0.801	INTERGENIC	regulatory region REDfly_CRMs
3L	18174247	3L_18174247_SNP [dm3] 3L_18181147_SNP [dm6]	T	G	2.190e^-4	0.801	INTRON W
2R	10533887	2R_10533887_SNP [dm3] 2R_14646382_SNP [dm6]	G	A	2.193e^-4	0.801	DOWNSTREAM CG10139 INTERGENIC
2L	13462249	2L_13462249_SNP [dm3] 2L_13462249_SNP [dm6]	T	C	2.197e^-4	0.801	INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	16647294	3L_16647294_INS [dm3] 3L_16654194_INS [dm6]	A	ATAAA	2.200e^-4	0.801	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
X	273699	X_273699_SNP [dm3] X_379666_SNP [dm6]	T	A	2.201e^-4	0.801	INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	8915792	2R_8915792_INS [dm3] 2R_13028287_INS [dm6]	C	CTGCTACC	2.203e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7930466	2L_7930466_SNP [dm3] 2L_7930466_SNP [dm6]	T	C	2.205e^-4	0.801	INTRON Snoo
X	19427548	X_19427548_SNP [dm3] X_19533515_SNP [dm6]	C	T	2.205e^-4	0.801	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4389201	3R_4389201_SNP [dm3] 3R_8563479_SNP [dm6]	C	T	2.208e^-4	0.801	UPSTREAM mRpS18A & 1 other DOWNSTREAM CG31460 EXON CR44291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	21377288	2L_21377288_SNP [dm3] 2L_21377288_SNP [dm6]	T	C	2.212e^-4	0.801	UTR_3_PRIME CG8665
2R	8172182	2R_8172182_SNP [dm3] 2R_12284677_SNP [dm6]	T	G	2.222e^-4	0.801	INTRON CG42700
2R	19003068	2R_19003068_SNP [dm3] 2R_23115545_SNP [dm6]	T	A	2.223e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3877620	2R_3877620_SNP [dm3] 2R_7990115_SNP [dm6]	C	T	2.231e^-4	0.801	UPSTREAM ACC INTRON ACC & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15542288	X_15542288_SNP [dm3] X_15648255_SNP [dm6]	C	A	2.233e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22175374	3R_22175374_SNP [dm3] 3R_26349652_SNP [dm6]	C	T	2.243e^-4	0.801	SYNONYMOUS_CODING CG33970
3L	1268055	3L_1268055_DEL [dm3] 3L_1268055_DEL [dm6]	GGA	AT	2.246e^-4	0.801	INTRON CG9134
2L	9839392	2L_9839392_SNP [dm3] 2L_9839392_SNP [dm6]	T	C	2.248e^-4	0.801	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12184342	3L_12184342_SNP [dm3] 3L_12191242_SNP [dm6]	C	G	2.249e^-4	0.801	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5346168	3R_5346168_SNP [dm3] 3R_9520446_SNP [dm6]	T	C	2.249e^-4	0.801	SYNONYMOUS_CODING JHDM2 INTRON CG8176	TF binding site mE1_TFBS_cad
2R	3877505	2R_3877505_SNP [dm3] 2R_7990000_SNP [dm6]	C	T	2.255e^-4	0.801	SYNONYMOUS_CODING Nup44A UPSTREAM ACC INTRON ACC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24668326	3R_24668326_SNP [dm3] 3R_28842604_SNP [dm6]	C	G	2.258e^-4	0.801	UPSTREAM Apc INTRON Apc
3L	17739962	3L_17739962_SNP [dm3] 3L_17746862_SNP [dm6]	G	A	2.261e^-4	0.801	UPSTREAM CG6034 INTRON Ccn
2R	16641199	2R_16641199_SNP [dm3] 2R_20753694_SNP [dm6]	T	C	2.263e^-4	0.801	UTR_3_PRIME CG34202	TF binding site mE1_TFBS_cad
2L	21069841	2L_21069841_SNP [dm3] 2L_21069841_SNP [dm6]	G	A	2.266e^-4	0.801	START_GAINED CG9265 UTR_5_PRIME CG9265 INTRON CG9265
X	8466359	X_8466359_SNP [dm3] X_8572326_SNP [dm6]	T	C	2.276e^-4	0.801	INTRON spirit	TF binding site mE1_TFBS_chinmo
3L	16738303	3L_16738303_SNP [dm3] 3L_16745203_SNP [dm6]	A	G	2.277e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	3385990	X_3385990_SNP [dm3] X_3491957_SNP [dm6]	G	A	2.282e^-4	0.801	SYNONYMOUS_CODING Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	12037072	2R_12037072_SNP [dm3] 2R_16149567_SNP [dm6]	T	C	2.283e^-4	0.801	SYNONYMOUS_CODING CG10731 UPSTREAM Ext2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
X	14507209	X_14507209_SNP [dm3] X_14613176_SNP [dm6]	G	A	2.288e^-4	0.801	INTRON NetA
2R	8171791	2R_8171791_SNP [dm3] 2R_12284286_SNP [dm6]	T	C	2.303e^-4	0.801	INTRON CG42700
2R	9558942	2R_9558942_SNP [dm3] 2R_13671437_SNP [dm6]	A	T	2.305e^-4	0.801	UTR_3_PRIME CG18368 DOWNSTREAM CR45031 INTRON fas
3L	12062200	3L_12062200_SNP [dm3] 3L_12069100_SNP [dm6]	C	A	2.305e^-4	0.801	NON_SYNONYMOUS_CODING Sema-5c	TF binding site mE1_TFBS_chinmo
2R	7290386	2R_7290386_SNP [dm3] 2R_11402881_SNP [dm6]	A	G	2.306e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9640086	2R_9640086_SNP [dm3] 2R_13752581_SNP [dm6]	G	T	2.316e^-4	0.801	INTERGENIC
X	8902895	X_8902895_SNP [dm3] X_9008862_SNP [dm6]	G	C	2.322e^-4	0.801	INTRON rdgA & 1 other
X	13829364	X_13829364_SNP [dm3] X_13935331_SNP [dm6]	A	T	2.325e^-4	0.801	INTRON mamo
X	13829375	X_13829375_SNP [dm3] X_13935342_SNP [dm6]	A	T	2.325e^-4	0.801	INTRON mamo
2L	12841469	2L_12841469_SNP [dm3] 2L_12841469_SNP [dm6]	C	A	2.326e^-4	0.801	UPSTREAM CR44971 DOWNSTREAM CR44970 INTERGENIC
X	1942149	X_1942149_INS [dm3] X_2048116_INS [dm6]	T	TACTAAT	2.329e^-4	0.801	INTRON CG4313 & 1 other
3L	18719834	3L_18719834_SNP [dm3] 3L_18726734_SNP [dm6]	C	A	2.333e^-4	0.801	INTERGENIC
3L	3230277	3L_3230277_SNP [dm3] 3L_3230277_SNP [dm6]	C	T	2.343e^-4	0.801	SYNONYMOUS_CODING CG11505	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13570030	3R_13570030_SNP [dm3] 3R_17744308_SNP [dm6]	A	C	2.343e^-4	0.801	SPLICE_SITE_REGION TyrRII INTRON TyrRII	TF binding site mE1_TFBS_cad
2R	17262141	2R_17262141_DEL [dm3] 2R_21374636_DEL [dm6]	TAT	T	2.346e^-4	0.801	INTRON cv-2
2R	16655607	2R_16655607_SNP [dm3] 2R_20768102_SNP [dm6]	A	T	2.347e^-4	0.801	DOWNSTREAM CR44665 INTERGENIC
2R	14794628	2R_14794628_SNP [dm3] 2R_18907123_SNP [dm6]	G	C	2.349e^-4	0.801	INTRON sano	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	768427	3L_768427_SNP [dm3] 3L_768427_SNP [dm6]	C	A	2.351e^-4	0.801	INTERGENIC
3L	768429	3L_768429_DEL [dm3] 3L_768429_DEL [dm6]	TCTGC	T	2.351e^-4	0.801	INTERGENIC
3R	25052909	3R_25052909_SNP [dm3] 3R_29227187_SNP [dm6]	C	A	2.355e^-4	0.801	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
3L	1085454	3L_1085454_SNP [dm3] 3L_1085454_SNP [dm6]	T	C	2.357e^-4	0.801	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	4308351	3L_4308351_SNP [dm3] 3L_4308351_SNP [dm6]	T	A	2.358e^-4	0.801	UPSTREAM dyl INTERGENIC
2L	3019429	2L_3019429_SNP [dm3] 2L_3019429_SNP [dm6]	T	A	2.361e^-4	0.801	INTRON CG17264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	7021962	2R_7021962_SNP [dm3] 2R_11134457_SNP [dm6]	A	G	2.367e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	14570942	X_14570942_SNP [dm3] X_14676909_SNP [dm6]	A	C	2.369e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16647330	3L_16647330_DEL [dm3] 3L_16654230_DEL [dm6]	ATTA	T	2.380e^-4	0.801	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2R	19791938	2R_19791938_SNP [dm3] 2R_23904415_SNP [dm6]	A	C	2.388e^-4	0.801	DOWNSTREAM Lpt & 1 other INTRON CG13562
2R	17262050	2R_17262050_SNP [dm3] 2R_21374545_SNP [dm6]	T	A	2.389e^-4	0.801	INTRON cv-2
2R	17262186	2R_17262186_INS [dm3] 2R_21374681_INS [dm6]	T	TT	2.389e^-4	0.801	INTRON cv-2
X	8947046	X_8947046_SNP [dm3] X_9053013_SNP [dm6]	T	C	2.398e^-4	0.801	SYNONYMOUS_CODING CG42388	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23381031	3R_23381031_SNP [dm3] 3R_27555309_SNP [dm6]	G	T	2.398e^-4	0.801	INTRON Klp98A
3L	15952437	3L_15952437_SNP [dm3] 3L_15959337_SNP [dm6]	G	A	2.404e^-4	0.801	SYNONYMOUS_CODING CG17032 DOWNSTREAM elgi
3L	15952461	3L_15952461_SNP [dm3] 3L_15959361_SNP [dm6]	T	C	2.404e^-4	0.801	SYNONYMOUS_CODING CG17032 DOWNSTREAM elgi
2L	14404481	2L_14404481_SNP [dm3] 2L_14404481_SNP [dm6]	A	G	2.411e^-4	0.801	INTRON elB	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3300951	2L_3300951_SNP [dm3] 2L_3300951_SNP [dm6]	C	A	2.426e^-4	0.801	INTRON CG9663
2R	13593883	2R_13593883_SNP [dm3] 2R_17706378_SNP [dm6]	T	C	2.432e^-4	0.801	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad
3L	18809463	3L_18809463_SNP [dm3] 3L_18816363_SNP [dm6]	C	T	2.432e^-4	0.801	INTRON CG14073
2L	9862237	2L_9862237_SNP [dm3] 2L_9862237_SNP [dm6]	G	T	2.436e^-4	0.801	INTRON nAChRalpha6
3L	7207598	3L_7207598_SNP [dm3] 3L_7214498_SNP [dm6]	A	G	2.445e^-4	0.801	INTERGENIC
3L	13624130	3L_13624130_SNP [dm3] 3L_13631030_SNP [dm6]	C	T	2.448e^-4	0.801	INTRON bru-3
2R	7022020	2R_7022020_SNP [dm3] 2R_11134515_SNP [dm6]	T	A	2.448e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	11500656	3R_11500656_SNP [dm3] 3R_15674934_SNP [dm6]	G	A	2.449e^-4	0.801	INTRON pxb
X	3729848	X_3729848_SNP [dm3] X_3835815_SNP [dm6]	T	C	2.450e^-4	0.801	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19331185	2R_19331185_SNP [dm3] 2R_23443662_SNP [dm6]	A	T	2.455e^-4	0.801	UPSTREAM CG43795 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16531316	3R_16531316_SNP [dm3] 3R_20705594_SNP [dm6]	A	G	2.468e^-4	0.801	INTRON Oamb
X	15645010	X_15645010_SNP [dm3] X_15750977_SNP [dm6]	G	A	2.470e^-4	0.801	UTR_3_PRIME CG8239 DOWNSTREAM Graf	TF binding site mE1_TFBS_cad
3R	2182005	3R_2182005_SNP [dm3] 3R_6356283_SNP [dm6]	C	T	2.477e^-4	0.801	INTRON Pak
2R	19640757	2R_19640757_SNP [dm3] 2R_23753234_SNP [dm6]	T	C	2.495e^-4	0.801	UTR_3_PRIME CG5532 DOWNSTREAM CG9850 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19654600	2R_19654600_SNP [dm3] 2R_23767077_SNP [dm6]	A	G	2.499e^-4	0.801	INTRON CG9850
2R	16655343	2R_16655343_SNP [dm3] 2R_20767838_SNP [dm6]	A	T	2.501e^-4	0.801	EXON CR44665
2L	3300762	2L_3300762_SNP [dm3] 2L_3300762_SNP [dm6]	C	A	2.508e^-4	0.801	INTRON CG9663
3L	12184341	3L_12184341_SNP [dm3] 3L_12191241_SNP [dm6]	A	G	2.514e^-4	0.801	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9341346	X_9341346_SNP [dm3] X_9447313_SNP [dm6]	C	T	2.516e^-4	0.801	INTRON mgl
X	4793532	X_4793532_SNP [dm3] X_4899499_SNP [dm6]	A	G	2.516e^-4	0.801	INTRON CG42594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16077185	X_16077185_SNP [dm3] X_16183152_SNP [dm6]	C	G	2.518e^-4	0.801	INTERGENIC
3L	1085786	3L_1085786_SNP [dm3] 3L_1085786_SNP [dm6]	G	A	2.521e^-4	0.801	INTRON bab1
3L	5486557	3L_5486557_SNP [dm3] 3L_5493457_SNP [dm6]	T	C	2.525e^-4	0.801	EXON CR44520
2L	524271	2L_524271_SNP [dm3] 2L_524271_SNP [dm6]	A	T	2.526e^-4	0.801	INTRON ush	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9515766	3L_9515766_SNP [dm3] 3L_9522666_SNP [dm6]	A	G	2.527e^-4	0.801	INTRON CG33700
X	15328364	X_15328364_SNP [dm3] X_15434331_SNP [dm6]	A	G	2.537e^-4	0.801	INTRON Cngl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11185328	3L_11185328_SNP [dm3] 3L_11192228_SNP [dm6]	G	C	2.542e^-4	0.801	INTRON GlcAT-P
2L	3767359	2L_3767359_SNP [dm3] 2L_3767359_SNP [dm6]	G	A	2.543e^-4	0.801	UPSTREAM mir-1004 INTRON CG43707
2L	3300726	2L_3300726_SNP [dm3] 2L_3300726_SNP [dm6]	T	G	2.543e^-4	0.801	INTRON CG9663
2L	1246102	2L_1246102_SNP [dm3] 2L_1246102_SNP [dm6]	C	A	2.544e^-4	0.801	INTERGENIC
2R	19640754	2R_19640754_SNP [dm3] 2R_23753231_SNP [dm6]	A	G	2.545e^-4	0.801	UTR_3_PRIME CG5532 DOWNSTREAM CG9850 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3136985	3L_3136985_SNP [dm3] 3L_3136985_SNP [dm6]	G	C	2.548e^-4	0.801	INTRON CG11537
3R	22000976	3R_22000976_SNP [dm3] 3R_26175254_SNP [dm6]	G	T	2.553e^-4	0.801	INTRON CG31323
X	19429358	X_19429358_SNP [dm3] X_19535325_SNP [dm6]	C	T	2.554e^-4	0.801	INTRON CG32532
X	3123311	X_3123311_SNP [dm3] X_3229278_SNP [dm6]	A	C	2.567e^-4	0.801	INTRON dnc
2R	19002952	2R_19002952_SNP [dm3] 2R_23115429_SNP [dm6]	C	A	2.567e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14524501	2L_14524501_SNP [dm3] 2L_14524501_SNP [dm6]	C	A	2.571e^-4	0.801	UTR_5_PRIME CG33648 UPSTREAM CG33648
3L	11022930	3L_11022930_SNP [dm3] 3L_11029830_SNP [dm6]	A	T	2.580e^-4	0.801	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14037179	X_14037179_SNP [dm3] X_14143146_SNP [dm6]	T	C	2.587e^-4	0.801	INTERGENIC
3L	13188920	3L_13188920_SNP [dm3] 3L_13195820_SNP [dm6]	C	T	2.588e^-4	0.801	INTERGENIC
3L	12436966	3L_12436966_DEL [dm3] 3L_12443866_DEL [dm6]	TTTT	T	2.590e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	6311873	3R_6311873_SNP [dm3] 3R_10486151_SNP [dm6]	A	T	2.597e^-4	0.801	INTERGENIC
3L	16367934	3L_16367934_SNP [dm3] 3L_16374834_SNP [dm6]	A	C	2.607e^-4	0.801	INTRON roq
X	3386176	X_3386176_SNP [dm3] X_3492143_SNP [dm6]	T	C	2.609e^-4	0.801	SYNONYMOUS_CODING Gas8 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16655430	2R_16655430_SNP [dm3] 2R_20767925_SNP [dm6]	A	G	2.613e^-4	0.801	DOWNSTREAM CR44665 INTERGENIC
2L	7678078	2L_7678078_SNP [dm3] 2L_7678078_SNP [dm6]	A	G	2.614e^-4	0.801	UPSTREAM Myo28B1 INTRON Myo28B1
2L	14286999	2L_14286999_SNP [dm3] 2L_14286999_SNP [dm6]	A	T	2.616e^-4	0.801	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8227295	2L_8227295_SNP [dm3] 2L_8227295_SNP [dm6]	A	C	2.622e^-4	0.801	INTRON Pvr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11795059	2L_11795059_DEL [dm3] 2L_11795059_DEL [dm6]	TCA	T	2.622e^-4	0.801	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
X	10571823	X_10571823_SNP [dm3] X_10677790_SNP [dm6]	C	T	2.629e^-4	0.801	INTRON X11Lbeta
2R	16657995	2R_16657995_SNP [dm3] 2R_20770490_SNP [dm6]	A	T	2.631e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19331216	2R_19331216_SNP [dm3] 2R_23443693_SNP [dm6]	T	A	2.634e^-4	0.801	UPSTREAM CG43795 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15457549	X_15457549_SNP [dm3] X_15563516_SNP [dm6]	T	C	2.638e^-4	0.801	INTERGENIC
2L	5149610	2L_5149610_SNP [dm3] 2L_5149610_SNP [dm6]	G	T	2.638e^-4	0.801	INTRON Msp300
3L	4147528	3L_4147528_SNP [dm3] 3L_4147528_SNP [dm6]	A	G	2.653e^-4	0.801	INTERGENIC
2L	1865944	2L_1865944_SNP [dm3] 2L_1865944_SNP [dm6]	C	T	2.656e^-4	0.801	INTRON CG31663
2R	4408380	2R_4408380_SNP [dm3] 2R_8520875_SNP [dm6]	T	A	2.666e^-4	0.801	INTRON mtt
3L	8225740	3L_8225740_SNP [dm3] 3L_8232640_SNP [dm6]	C	T	2.670e^-4	0.801	DOWNSTREAM CR43953 INTRON CG7213
2R	6525565	2R_6525565_SNP [dm3] 2R_10638060_SNP [dm6]	A	C	2.683e^-4	0.801	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2L	3300761	2L_3300761_SNP [dm3] 2L_3300761_SNP [dm6]	T	A	2.687e^-4	0.801	INTRON CG9663
3L	9023741	3L_9023741_SNP [dm3] 3L_9030641_SNP [dm6]	A	G	2.689e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1245980	2L_1245980_SNP [dm3] 2L_1245980_SNP [dm6]	C	T	2.691e^-4	0.801	INTERGENIC
2L	12653684	2L_12653684_SNP [dm3] 2L_12653684_SNP [dm6]	C	T	2.691e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17884545	2L_17884545_SNP [dm3] 2L_17884545_SNP [dm6]	C	T	2.701e^-4	0.801	INTERGENIC
3L	8224087	3L_8224087_SNP [dm3] 3L_8230987_SNP [dm6]	C	A	2.713e^-4	0.801	DOWNSTREAM eIF4E-3 & 1 other EXON CR43953
3L	7136729	3L_7136729_SNP [dm3] 3L_7143629_SNP [dm6]	C	T	2.714e^-4	0.801	UTR_3_PRIME corn DOWNSTREAM melt & 1 other
2L	1613731	2L_1613731_SNP [dm3] 2L_1613731_SNP [dm6]	T	A	2.719e^-4	0.801	INTRON RFeSP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	17619976	2L_17619976_SNP [dm3] 2L_17619976_SNP [dm6]	C	A	2.720e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_inv
3L	8545309	3L_8545309_SNP [dm3] 3L_8552209_SNP [dm6]	C	T	2.720e^-4	0.801	INTRON rhea
3L	2120161	3L_2120161_SNP [dm3] 3L_2120161_SNP [dm6]	A	C	2.729e^-4	0.801	INTRON zormin
2L	22090646	2L_22090646_SNP [dm3] 2L_22090646_SNP [dm6]	G	C	2.730e^-4	0.801	INTERGENIC
3R	22175226	3R_22175226_DEL [dm3] 3R_26349504_DEL [dm6]	ACCAGCGAA	A	2.730e^-4	0.801	INTRON CG33970
2R	4073189	2R_4073189_SNP [dm3] 2R_8185684_SNP [dm6]	T	G	2.731e^-4	0.801	INTRON LRP1
2R	17262064	2R_17262064_SNP [dm3] 2R_21374559_SNP [dm6]	G	A	2.733e^-4	0.801	INTRON cv-2
2R	19001024	2R_19001024_SNP [dm3] 2R_23113501_SNP [dm6]	T	A	2.739e^-4	0.801	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4457282	2R_4457282_SNP [dm3] 2R_8569777_SNP [dm6]	G	C	2.740e^-4	0.801	UPSTREAM Cyp6a13 INTRON Cyp6a15Psi
2R	14953460	2R_14953460_SNP [dm3] 2R_19065955_SNP [dm6]	T	C	2.741e^-4	0.801	INTERGENIC
X	21445753	X_21445753_SNP [dm3] X_21574726_SNP [dm6]	A	C	2.742e^-4	0.801	INTERGENIC
2L	3302174	2L_3302174_SNP [dm3] 2L_3302174_SNP [dm6]	G	T	2.745e^-4	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17431105	X_17431105_SNP [dm3] X_17537072_SNP [dm6]	A	T	2.747e^-4	0.801	INTRON CG43658
3R	3865855	3R_3865855_SNP [dm3] 3R_8040133_SNP [dm6]	C	T	2.747e^-4	0.801	DOWNSTREAM CR44936 INTERGENIC
3L	5091719	3L_5091719_SNP [dm3] 3L_5091719_SNP [dm6]	G	C	2.748e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4096284	2R_4096284_SNP [dm3] 2R_8208779_SNP [dm6]	T	C	2.749e^-4	0.801	INTRON LRP1
3L	8186839	3L_8186839_SNP [dm3] 3L_8193739_SNP [dm6]	C	T	2.751e^-4	0.801	SYNONYMOUS_CODING MED24 UPSTREAM CG7387	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17864180	2R_17864180_SNP [dm3] 2R_21976675_SNP [dm6]	T	G	2.751e^-4	0.801	NON_SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304
2R	17864187	2R_17864187_SNP [dm3] 2R_21976682_SNP [dm6]	G	A	2.751e^-4	0.801	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304
3L	7125732	3L_7125732_DEL [dm3] 3L_7132632_DEL [dm6]	AA	A	2.754e^-4	0.801	UPSTREAM Dbi INTRON Dbi	TF binding site BDTNP1_TFBS_da
3L	8536677	3L_8536677_SNP [dm3] 3L_8543577_SNP [dm6]	T	C	2.760e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	12159338	2R_12159338_SNP [dm3] 2R_16271833_SNP [dm6]	A	T	2.771e^-4	0.801	UTR_5_PRIME Khc UPSTREAM CG33017	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	8197466	2R_8197466_SNP [dm3] 2R_12309961_SNP [dm6]	C	A	2.772e^-4	0.801	SYNONYMOUS_CODING CG17739 UPSTREAM CG30203	TF binding site mE1_TFBS_chinmo
3R	24382528	3R_24382528_SNP [dm3] 3R_28556806_SNP [dm6]	T	C	2.775e^-4	0.801	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8171937	2R_8171937_SNP [dm3] 2R_12284432_SNP [dm6]	T	C	2.777e^-4	0.801	INTRON CG42700
2R	19000804	2R_19000804_SNP [dm3] 2R_23113281_SNP [dm6]	C	T	2.788e^-4	0.801	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16349058	3R_16349058_SNP [dm3] 3R_20523336_SNP [dm6]	G	A	2.791e^-4	0.801	INTERGENIC
2R	17358461	2R_17358461_SNP [dm3] 2R_21470956_SNP [dm6]	T	G	2.794e^-4	0.801	INTRON Sdc
3L	3225926	3L_3225926_SNP [dm3] 3L_3225926_SNP [dm6]	A	C	2.801e^-4	0.801	UPSTREAM CG11505 INTRON CG11505	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10889394	X_10889394_SNP [dm3] X_10995361_SNP [dm6]	A	T	2.803e^-4	0.801	INTRON CG42339
X	14798481	X_14798481_SNP [dm3] X_14904448_SNP [dm6]	T	C	2.808e^-4	0.801	SYNONYMOUS_CODING CG9512 INTRON Flo2
2R	11436686	2R_11436686_SNP [dm3] 2R_15549181_SNP [dm6]	A	C	2.809e^-4	0.801	INTRON CG8192	TF binding site BDTNP1_TFBS_z
2L	19946525	2L_19946525_SNP [dm3] 2L_19946525_SNP [dm6]	C	T	2.809e^-4	0.801	SYNONYMOUS_CODING sick INTRON sick	TF binding site mE1_TFBS_chinmo
2R	12657893	2R_12657893_SNP [dm3] 2R_16770388_SNP [dm6]	A	T	2.812e^-4	0.801	INTRON unc-104
3R	25052902	3R_25052902_SNP [dm3] 3R_29227180_SNP [dm6]	G	T	2.816e^-4	0.801	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
3R	19237211	3R_19237211_SNP [dm3] 3R_23411489_SNP [dm6]	G	C	2.819e^-4	0.801	NON_SYNONYMOUS_CODING CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18575906	3L_18575906_SNP [dm3] 3L_18582806_SNP [dm6]	C	T	2.820e^-4	0.801	UPSTREAM CR45435 INTERGENIC
2R	7313858	2R_7313858_SNP [dm3] 2R_11426353_SNP [dm6]	A	G	2.822e^-4	0.801	INTRON Drip
3L	10383811	3L_10383811_SNP [dm3] 3L_10390711_SNP [dm6]	G	C	2.828e^-4	0.801	INTERGENIC
X	14851913	X_14851913_SNP [dm3] X_14957880_SNP [dm6]	T	G	2.829e^-4	0.801	INTRON eag
2L	5286319	2L_5286319_SNP [dm3] 2L_5286319_SNP [dm6]	A	G	2.842e^-4	0.801	INTERGENIC
2R	19569622	2R_19569622_SNP [dm3] 2R_23682099_SNP [dm6]	C	A	2.842e^-4	0.801	SPLICE_SITE_REGION St1 INTRON St1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18772247	X_18772247_SNP [dm3] X_18878214_SNP [dm6]	G	A	2.854e^-4	0.801	UTR_3_PRIME CG34401	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10891148	X_10891148_SNP [dm3] X_10997115_SNP [dm6]	T	C	2.859e^-4	0.801	INTRON CG42339
2L	8310902	2L_8310902_SNP [dm3] 2L_8310902_SNP [dm6]	A	G	2.862e^-4	0.801	SYNONYMOUS_CODING CG7810 UPSTREAM CG7806 DOWNSTREAM CG7818	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	16356421	2R_16356421_SNP [dm3] 2R_20468916_SNP [dm6]	A	T	2.862e^-4	0.801	INTRON CG12484
3L	10922474	3L_10922474_SNP [dm3] 3L_10929374_SNP [dm6]	G	A	2.865e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15129575	X_15129575_SNP [dm3] X_15235542_SNP [dm6]	T	G	2.866e^-4	0.801	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12186814	2L_12186814_SNP [dm3] 2L_12186814_SNP [dm6]	A	T	2.870e^-4	0.801	INTRON aret	TF binding site BDTNP1_TFBS_dl
3L	3195548	3L_3195548_SNP [dm3] 3L_3195548_SNP [dm6]	G	A	2.877e^-4	0.801	SYNONYMOUS_CODING Hsp83	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3302197	2L_3302197_SNP [dm3] 2L_3302197_SNP [dm6]	A	T	2.879e^-4	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6832142	3L_6832142_SNP [dm3] 3L_6839042_SNP [dm6]	T	A	2.889e^-4	0.801	INTERGENIC
2L	9961424	2L_9961424_SNP [dm3] 2L_9961424_SNP [dm6]	C	T	2.896e^-4	0.801	SYNONYMOUS_CODING CG5850 EXON CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8900582	3L_8900582_SNP [dm3] 3L_8907482_SNP [dm6]	C	G	2.903e^-4	0.801	INTRON mfr
3L	17738232	3L_17738232_SNP [dm3] 3L_17745132_SNP [dm6]	G	A	2.906e^-4	0.801	DOWNSTREAM CG6034 INTRON Ccn
2L	5074691	2L_5074691_SNP [dm3] 2L_5074691_SNP [dm6]	T	A	2.910e^-4	0.801	INTRON pgant5
2R	8840421	2R_8840421_SNP [dm3] 2R_12952916_SNP [dm6]	T	A	2.912e^-4	0.801	UPSTREAM CG13321 & 2 others INTERGENIC
3L	6713336	3L_6713336_SNP [dm3] 3L_6720236_SNP [dm6]	G	A	2.929e^-4	0.801	UPSTREAM ple INTERGENIC	regulatory region REDfly_CRMs
2L	18775632	2L_18775632_SNP [dm3] 2L_18775632_SNP [dm6]	G	T	2.930e^-4	0.801	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18775633	2L_18775633_SNP [dm3] 2L_18775633_SNP [dm6]	G	C	2.930e^-4	0.801	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18541695	3L_18541695_SNP [dm3] 3L_18548595_SNP [dm6]	C	T	2.936e^-4	0.801	INTERGENIC
2L	9964079	2L_9964079_SNP [dm3] 2L_9964079_SNP [dm6]	G	A	2.939e^-4	0.801	UPSTREAM CG5850 DOWNSTREAM Dref INTERGENIC
2R	17817288	2R_17817288_SNP [dm3] 2R_21929783_SNP [dm6]	A	G	2.940e^-4	0.801	SYNONYMOUS_CODING Fili
X	12987168	X_12987168_SNP [dm3] X_13093135_SNP [dm6]	T	C	2.944e^-4	0.801	INTRON lic
2R	4128973	2R_4128973_SNP [dm3] 2R_8241468_SNP [dm6]	A	T	2.961e^-4	0.801	DOWNSTREAM CR44276 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	17373506	2R_17373506_SNP [dm3] 2R_21486001_SNP [dm6]	C	T	2.965e^-4	0.801	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_HSA
X	18728214	X_18728214_SNP [dm3] X_18834181_SNP [dm6]	A	G	2.966e^-4	0.801	INTRON Pvf1	TF binding site BDTNP1_TFBS_da
3L	1185434	3L_1185434_SNP [dm3] 3L_1185434_SNP [dm6]	A	G	2.968e^-4	0.801	INTERGENIC
2R	6828455	2R_6828455_SNP [dm3] 2R_10940950_SNP [dm6]	G	A	2.969e^-4	0.801	SYNONYMOUS_CODING Spn47C
3R	4904571	3R_4904571_SNP [dm3] 3R_9078849_SNP [dm6]	G	T	2.971e^-4	0.801	INTRON pum
X	19427504	X_19427504_SNP [dm3] X_19533471_SNP [dm6]	C	T	2.973e^-4	0.801	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13574744	3R_13574744_SNP [dm3] 3R_17749022_SNP [dm6]	T	G	2.979e^-4	0.801	INTERGENIC
2R	17884793	2R_17884793_SNP [dm3] 2R_21997288_SNP [dm6]	G	C	2.992e^-4	0.801	INTRON CG34370
2R	11609360	2R_11609360_SNP [dm3] 2R_15721855_SNP [dm6]	T	C	2.994e^-4	0.801	INTERGENIC
2L	924918	2L_924918_SNP [dm3] 2L_924918_SNP [dm6]	C	T	2.994e^-4	0.801	INTRON CG4341
X	19624633	X_19624633_SNP [dm3] X_19730600_SNP [dm6]	A	T	2.998e^-4	0.801	UPSTREAM AP-1-2beta DOWNSTREAM CG12531 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19003185	2R_19003185_SNP [dm3] 2R_23115662_SNP [dm6]	A	T	3.002e^-4	0.801	INTERGENIC
X	17576001	X_17576001_SNP [dm3] X_17681968_SNP [dm6]	C	A	3.006e^-4	0.801	INTRON chas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20539420	X_20539420_SNP [dm3] X_20668393_SNP [dm6]	G	A	3.007e^-4	0.801	UTR_5_PRIME CG1835 INTRON CG1835	TF binding site BDTNP1_TFBS_dl
X	21470001	X_21470001_SNP [dm3] X_21598974_SNP [dm6]	G	A	3.012e^-4	0.801	INTERGENIC
3R	22716103	3R_22716103_SNP [dm3] 3R_26890381_SNP [dm6]	A	G	3.012e^-4	0.801	INTRON T48	regulatory region REDfly_CRMs
2R	16677457	2R_16677457_SNP [dm3] 2R_20789952_SNP [dm6]	G	A	3.014e^-4	0.801	SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
2R	9264154	2R_9264154_SNP [dm3] 2R_13376649_SNP [dm6]	C	T	3.020e^-4	0.801	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264159	2R_9264159_SNP [dm3] 2R_13376654_SNP [dm6]	T	A	3.020e^-4	0.801	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	19330756	2R_19330756_SNP [dm3] 2R_23443233_SNP [dm6]	A	G	3.023e^-4	0.801	UPSTREAM CG43795 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	14857288	X_14857288_DEL [dm3] X_14963255_DEL [dm6]	AA	A	3.032e^-4	0.801	INTRON eag
2L	16944061	2L_16944061_SNP [dm3] 2L_16944061_SNP [dm6]	A	T	3.035e^-4	0.801	DOWNSTREAM CR43053 INTERGENIC
2L	6558001	2L_6558001_SNP [dm3] 2L_6558001_SNP [dm6]	C	A	3.036e^-4	0.801	UPSTREAM Osm6 INTRON CoVb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Ubx
2R	6531734	2R_6531734_SNP [dm3] 2R_10644229_SNP [dm6]	G	A	3.036e^-4	0.801	INTRON Git	TF binding site mE1_TFBS_HSA
2L	4371347	2L_4371347_SNP [dm3] 2L_4371347_SNP [dm6]	G	T	3.038e^-4	0.801	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	13685680	2L_13685680_SNP [dm3] 2L_13685680_SNP [dm6]	C	T	3.040e^-4	0.801	INTRON CG31814
3L	16647282	3L_16647282_SNP [dm3] 3L_16654182_SNP [dm6]	A	G	3.049e^-4	0.801	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	990115	2L_990115_SNP [dm3] 2L_990115_SNP [dm6]	T	C	3.056e^-4	0.801	EXON CR44801	TF binding site mE1_TFBS_chinmo
3R	9994124	3R_9994124_SNP [dm3] 3R_14168402_SNP [dm6]	G	T	3.057e^-4	0.801	UTR_3_PRIME Dop1R1
3L	11764935	3L_11764935_SNP [dm3] 3L_11771835_SNP [dm6]	G	C	3.065e^-4	0.801	NON_SYNONYMOUS_CODING Muc68D
3L	7689796	3L_7689796_SNP [dm3] 3L_7696696_SNP [dm6]	A	C	3.068e^-4	0.801	SYNONYMOUS_CODING Ank2 INTRON CG32373
2L	3302376	2L_3302376_SNP [dm3] 2L_3302376_SNP [dm6]	C	G	3.069e^-4	0.801	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2587620	X_2587620_SNP [dm3] X_2693587_SNP [dm6]	G	T	3.077e^-4	0.801	SYNONYMOUS_CODING CG2650 DOWNSTREAM per & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17060282	2R_17060282_SNP [dm3] 2R_21172777_SNP [dm6]	G	C	3.078e^-4	0.801	SYNONYMOUS_CODING Xpd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19256979	X_19256979_SNP [dm3] X_19362946_SNP [dm6]	A	T	3.094e^-4	0.802	INTRON kek5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19320251	X_19320251_SNP [dm3] X_19426218_SNP [dm6]	A	C	3.097e^-4	0.802	INTRON kek5
3L	6847892	3L_6847892_SNP [dm3] 3L_6854792_SNP [dm6]	C	T	3.099e^-4	0.802	INTERGENIC
X	14570979	X_14570979_SNP [dm3] X_14676946_SNP [dm6]	A	T	3.102e^-4	0.802	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	19995486	3L_19995486_SNP [dm3] 3L_20002386_SNP [dm6]	G	C	3.105e^-4	0.802	UTR_3_PRIME Tom20 UPSTREAM CG7668 DOWNSTREAM Tom20	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Stat92E
X	5266128	X_5266128_SNP [dm3] X_5372095_SNP [dm6]	A	T	3.108e^-4	0.802	INTRON SK
X	5034645	X_5034645_SNP [dm3] X_5140612_SNP [dm6]	T	G	3.110e^-4	0.802	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12483772	2R_12483772_SNP [dm3] 2R_16596267_SNP [dm6]	T	A	3.115e^-4	0.802	SYNONYMOUS_CODING CG8303	TF binding site mE1_TFBS_sens
3R	19439863	3R_19439863_SNP [dm3] 3R_23614141_SNP [dm6]	T	G	3.117e^-4	0.802	INTRON CG31145
2R	19001023	2R_19001023_SNP [dm3] 2R_23113500_SNP [dm6]	A	T	3.129e^-4	0.803	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7670574	2R_7670574_SNP [dm3] 2R_11783069_SNP [dm6]	A	T	3.131e^-4	0.803	INTRON ths
2L	10632087	2L_10632087_SNP [dm3] 2L_10632087_SNP [dm6]	G	A	3.139e^-4	0.804	UPSTREAM CG7329 INTRON CG7329
X	17171333	X_17171333_SNP [dm3] X_17277300_SNP [dm6]	C	T	3.161e^-4	0.804	INTRON f
3L	6848478	3L_6848478_SNP [dm3] 3L_6855378_SNP [dm6]	G	C	3.177e^-4	0.804	INTERGENIC
2R	16658190	2R_16658190_SNP [dm3] 2R_20770685_SNP [dm6]	A	G	3.177e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	24347505	3R_24347505_SNP [dm3] 3R_28521783_SNP [dm6]	C	T	3.192e^-4	0.804	INTRON Ppn
3L	7874994	3L_7874994_SNP [dm3] 3L_7881894_SNP [dm6]	T	C	3.197e^-4	0.804	INTRON CG32365
2R	16658621	2R_16658621_INS [dm3] 2R_20771116_INS [dm6]	A	AA	3.200e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16021545	2R_16021545_SNP [dm3] 2R_20134040_SNP [dm6]	G	T	3.211e^-4	0.804	INTERGENIC
2L	2160528	2L_2160528_SNP [dm3] 2L_2160528_SNP [dm6]	G	A	3.228e^-4	0.804	UTR_5_PRIME aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
X	10903621	X_10903621_SNP [dm3] X_11009588_SNP [dm6]	C	T	3.229e^-4	0.804	INTRON CG42339
3L	9671152	3L_9671152_SNP [dm3] 3L_9678052_SNP [dm6]	C	A	3.241e^-4	0.804	INTRON fry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	8824406	3L_8824406_SNP [dm3] 3L_8831306_SNP [dm6]	T	A	3.245e^-4	0.804	INTRON dally
2L	14938729	2L_14938729_SNP [dm3] 2L_14938729_SNP [dm6]	A	C	3.250e^-4	0.804	INTRON CG42313
2R	9644532	2R_9644532_SNP [dm3] 2R_13757027_SNP [dm6]	A	G	3.252e^-4	0.804	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9023736	3L_9023736_SNP [dm3] 3L_9030636_SNP [dm6]	C	G	3.254e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10854294	3L_10854294_SNP [dm3] 3L_10861194_SNP [dm6]	C	A	3.255e^-4	0.804	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6816696	2L_6816696_SNP [dm3] 2L_6816696_SNP [dm6]	A	G	3.263e^-4	0.804	INTERGENIC
2R	8552108	2R_8552108_SNP [dm3] 2R_12664603_SNP [dm6]	G	A	3.264e^-4	0.804	INTRON nemy
2L	19827186	2L_19827186_SNP [dm3] 2L_19827186_SNP [dm6]	A	G	3.270e^-4	0.804	UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9940603	3L_9940603_SNP [dm3] 3L_9947503_SNP [dm6]	T	G	3.271e^-4	0.804	INTRON CG34356
X	15645298	X_15645298_SNP [dm3] X_15751265_SNP [dm6]	T	G	3.272e^-4	0.804	UTR_3_PRIME CG8239 DOWNSTREAM Graf & 1 other
2R	12163197	2R_12163197_SNP [dm3] 2R_16275692_SNP [dm6]	A	T	3.272e^-4	0.804	SYNONYMOUS_CODING CG33017
2L	19822561	2L_19822561_SNP [dm3] 2L_19822561_SNP [dm6]	T	C	3.273e^-4	0.804	INTRON sick
2R	14399900	2R_14399900_SNP [dm3] 2R_18512395_SNP [dm6]	A	C	3.277e^-4	0.804	INTERGENIC
3L	3825109	3L_3825109_SNP [dm3] 3L_3825109_SNP [dm6]	T	C	3.277e^-4	0.804	UPSTREAM Rdh INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9862231	2L_9862231_SNP [dm3] 2L_9862231_SNP [dm6]	C	A	3.277e^-4	0.804	INTRON nAChRalpha6
3L	8766323	3L_8766323_SNP [dm3] 3L_8773223_SNP [dm6]	A	G	3.280e^-4	0.804	INTRON Fhos	TF binding site BDTNP1_TFBS_prd
3L	17740457	3L_17740457_SNP [dm3] 3L_17747357_SNP [dm6]	G	C	3.284e^-4	0.804	UPSTREAM CG6034 INTRON Ccn
3L	15220321	3L_15220321_SNP [dm3] 3L_15227221_SNP [dm6]	G	A	3.286e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5121445	2R_5121445_DEL [dm3] 2R_9233940_DEL [dm6]	GCATGG	G	3.288e^-4	0.804	INTRON hig	TF binding site mE1_TFBS_cad
3R	25251468	3R_25251468_SNP [dm3] 3R_29425746_SNP [dm6]	T	G	3.288e^-4	0.804	INTRON Ptp99A
3R	18661204	3R_18661204_SNP [dm3] 3R_22835482_SNP [dm6]	G	T	3.295e^-4	0.804	INTERGENIC
X	22235260	X_22235260_SNP [dm3] X_22833424_SNP [dm6]	G	A	3.295e^-4	0.804	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	10955369	3L_10955369_SNP [dm3] 3L_10962269_SNP [dm6]	G	T	3.295e^-4	0.804	DOWNSTREAM CR45249 INTERGENIC
2L	21203902	2L_21203902_SNP [dm3] 2L_21203902_SNP [dm6]	G	A	3.300e^-4	0.804	INTERGENIC
2R	8199711	2R_8199711_SNP [dm3] 2R_12312206_SNP [dm6]	C	T	3.302e^-4	0.804	SYNONYMOUS_CODING CG30203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11368650	3L_11368650_SNP [dm3] 3L_11375550_SNP [dm6]	C	T	3.305e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	674169	2L_674169_SNP [dm3] 2L_674169_SNP [dm6]	A	G	3.308e^-4	0.804	INTRON ds
X	15519367	X_15519367_SNP [dm3] X_15625334_SNP [dm6]	C	T	3.308e^-4	0.804	INTRON sog	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8199851	2R_8199851_SNP [dm3] 2R_12312346_SNP [dm6]	C	T	3.309e^-4	0.804	SYNONYMOUS_CODING CG30203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14280505	2L_14280505_SNP [dm3] 2L_14280505_SNP [dm6]	T	C	3.310e^-4	0.804	INTRON wb	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	9864393	2R_9864393_SNP [dm3] 2R_13976888_SNP [dm6]	T	C	3.318e^-4	0.804	NON_SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13115882	2L_13115882_DEL [dm3] 2L_13115882_DEL [dm6]	GG	G	3.325e^-4	0.804	INTERGENIC
2L	2432321	2L_2432321_SNP [dm3] 2L_2432321_SNP [dm6]	C	T	3.328e^-4	0.804	INTRON dpp
2L	14403950	2L_14403950_SNP [dm3] 2L_14403950_SNP [dm6]	T	A	3.336e^-4	0.804	INTRON elB	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	3385900	X_3385900_SNP [dm3] X_3491867_SNP [dm6]	T	C	3.349e^-4	0.804	SYNONYMOUS_CODING Gas8 DOWNSTREAM CG10803 INTRON CR44999	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	11297802	2L_11297802_SNP [dm3] 2L_11297802_SNP [dm6]	A	C	3.351e^-4	0.804	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9190162	2R_9190162_SNP [dm3] 2R_13302657_SNP [dm6]	C	T	3.353e^-4	0.804	INTERGENIC
2R	9190164	2R_9190164_DEL [dm3] 2R_13302659_DEL [dm6]	AATTCTTC	T	3.353e^-4	0.804	INTERGENIC
2L	902674	2L_902674_INS [dm3] 2L_902674_INS [dm6]	C	CC	3.356e^-4	0.804	INTERGENIC
2R	21009107	2R_21009107_SNP [dm3] 2R_25121584_SNP [dm6]	C	T	3.359e^-4	0.804	INTRON lov	TF binding site BDTNP1_TFBS_dl
2R	16655653	2R_16655653_SNP [dm3] 2R_20768148_SNP [dm6]	C	G	3.362e^-4	0.804	DOWNSTREAM CR44665 INTERGENIC
X	13829259	X_13829259_SNP [dm3] X_13935226_SNP [dm6]	G	T	3.364e^-4	0.804	INTRON mamo
3L	7596809	3L_7596809_SNP [dm3] 3L_7603709_SNP [dm6]	C	T	3.366e^-4	0.804	NON_SYNONYMOUS_CODING CG33275
3L	6372513	3L_6372513_SNP [dm3] 3L_6379413_SNP [dm6]	A	G	3.372e^-4	0.804	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	14196860	2L_14196860_SNP [dm3] 2L_14196860_SNP [dm6]	T	G	3.381e^-4	0.805	INTRON Dyrk2
X	3351570	X_3351570_SNP [dm3] X_3457537_SNP [dm6]	C	G	3.392e^-4	0.806	INTRON CR44999
2R	7676758	2R_7676758_SNP [dm3] 2R_11789253_SNP [dm6]	G	C	3.393e^-4	0.806	NON_SYNONYMOUS_CODING Ir48c INTRON ths
X	13828993	X_13828993_DEL [dm3] X_13934960_DEL [dm6]	GGTTTTCATTG...	G	3.395e^-4	0.806	INTRON mamo
3L	2912316	3L_2912316_SNP [dm3] 3L_2912316_SNP [dm6]	C	T	3.399e^-4	0.806	INTRON Shab
2L	2837107	2L_2837107_SNP [dm3] 2L_2837107_SNP [dm6]	G	T	3.403e^-4	0.806	INTRON CG3119	TF binding site mE1_TFBS_cad
3R	8126406	3R_8126406_SNP [dm3] 3R_12300684_SNP [dm6]	G	C	3.420e^-4	0.806	INTRON svp	TF binding site mE1_TFBS_cad
2R	11609373	2R_11609373_SNP [dm3] 2R_15721868_SNP [dm6]	G	A	3.423e^-4	0.806	INTERGENIC
X	18392460	X_18392460_SNP [dm3] X_18498427_SNP [dm6]	A	T	3.429e^-4	0.806	SPLICE_SITE_REGION GalNAc-T2 INTRON GalNAc-T2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12204003	X_12204003_SNP [dm3] X_12309970_SNP [dm6]	A	G	3.430e^-4	0.806	INTRON Ten-a
2R	4442513	2R_4442513_SNP [dm3] 2R_8555008_SNP [dm6]	T	C	3.433e^-4	0.806	INTERGENIC
2L	3125038	2L_3125038_SNP [dm3] 2L_3125038_SNP [dm6]	A	G	3.436e^-4	0.806	INTRON toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1295875	3L_1295875_SNP [dm3] 3L_1295875_SNP [dm6]	C	T	3.439e^-4	0.806	UPSTREAM Rabex-5 DOWNSTREAM CG32333 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6165200	2L_6165200_SNP [dm3] 2L_6165200_SNP [dm6]	G	A	3.440e^-4	0.806	INTERGENIC
3L	2831170	3L_2831170_SNP [dm3] 3L_2831170_SNP [dm6]	A	T	3.446e^-4	0.806	INTRON CG43444
2R	16658861	2R_16658861_SNP [dm3] 2R_20771356_SNP [dm6]	C	G	3.478e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	15768507	3L_15768507_SNP [dm3] 3L_15775407_SNP [dm6]	C	T	3.478e^-4	0.806	INTERGENIC
X	14851893	X_14851893_DEL [dm3] X_14957860_DEL [dm6]	GTATGTG	G	3.480e^-4	0.806	INTRON eag
2L	2159123	2L_2159123_SNP [dm3] 2L_2159123_SNP [dm6]	G	A	3.487e^-4	0.806	SYNONYMOUS_CODING aop	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17947599	2R_17947599_SNP [dm3] 2R_22060094_SNP [dm6]	A	T	3.495e^-4	0.806	UPSTREAM Snp INTRON CG13501	TF binding site BDTNP1_TFBS_dl
3L	910392	3L_910392_SNP [dm3] 3L_910392_SNP [dm6]	A	G	3.501e^-4	0.806	SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	7679121	2L_7679121_SNP [dm3] 2L_7679121_SNP [dm6]	A	G	3.502e^-4	0.806	INTRON Myo28B1
X	15645319	X_15645319_SNP [dm3] X_15751286_SNP [dm6]	G	A	3.503e^-4	0.806	UTR_3_PRIME CG8239 DOWNSTREAM Graf & 1 other
2L	8468375	2L_8468375_SNP [dm3] 2L_8468375_SNP [dm6]	A	T	3.509e^-4	0.806	INTRON d	TF binding site mE1_TFBS_Kr
3L	2828529	3L_2828529_SNP [dm3] 3L_2828529_SNP [dm6]	C	T	3.511e^-4	0.806	INTRON CG43444
3L	18575916	3L_18575916_SNP [dm3] 3L_18582816_SNP [dm6]	G	C	3.531e^-4	0.806	UPSTREAM CR45435 INTERGENIC
2L	18731745	2L_18731745_SNP [dm3] 2L_18731745_SNP [dm6]	C	T	3.537e^-4	0.806	UTR_5_PRIME CG10348 UPSTREAM CG10348 & 1 other
3L	16647280	3L_16647280_SNP [dm3] 3L_16654180_SNP [dm6]	A	C	3.543e^-4	0.806	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3R	8363709	3R_8363709_SNP [dm3] 3R_12537987_SNP [dm6]	A	T	3.550e^-4	0.806	INTRON Octbeta3R
X	2512165	X_2512165_SNP [dm3] X_2618132_SNP [dm6]	T	A	3.564e^-4	0.806	UTR_3_PRIME Tsp3A DOWNSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_run
3L	1841199	3L_1841199_SNP [dm3] 3L_1841199_SNP [dm6]	C	G	3.568e^-4	0.806	INTRON Cpr62Bc	TF binding site mE1_TFBS_chinmo
3R	23723038	3R_23723038_INS [dm3] 3R_27897316_INS [dm6]	C	CGAC	3.578e^-4	0.806	INTRON CG34353
3L	7043146	3L_7043146_SNP [dm3] 3L_7050046_SNP [dm6]	G	T	3.582e^-4	0.806	INTRON Mp
3L	23744974	3L_23744974_SNP [dm3] 3L_23751874_SNP [dm6]	G	T	3.588e^-4	0.806	INTERGENIC
3L	4635988	3L_4635988_SNP [dm3] 3L_4635988_SNP [dm6]	A	G	3.611e^-4	0.806	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
X	10903527	X_10903527_SNP [dm3] X_11009494_SNP [dm6]	A	C	3.614e^-4	0.806	INTRON CG42339
3L	7739405	3L_7739405_SNP [dm3] 3L_7746305_SNP [dm6]	G	T	3.616e^-4	0.806	INTRON CG32373
3L	10624063	3L_10624063_SNP [dm3] 3L_10630963_SNP [dm6]	A	C	3.619e^-4	0.806	UPSTREAM CG42536 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	1618995	X_1618995_SNP [dm3] X_1724962_SNP [dm6]	C	T	3.625e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1619031	X_1619031_SNP [dm3] X_1724998_SNP [dm6]	G	A	3.625e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12003421	2R_12003421_SNP [dm3] 2R_16115916_SNP [dm6]	T	C	3.626e^-4	0.806	SYNONYMOUS_CODING Asph UTR_3_PRIME Asph
2R	10487851	2R_10487851_SNP [dm3] 2R_14600346_SNP [dm6]	C	T	3.631e^-4	0.806	UPSTREAM Blos1 INTRON RpI1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	19331099	2R_19331099_SNP [dm3] 2R_23443576_SNP [dm6]	C	G	3.632e^-4	0.806	UPSTREAM CG43795 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16495613	3L_16495613_SNP [dm3] 3L_16502513_SNP [dm6]	G	A	3.634e^-4	0.806	SYNONYMOUS_CODING CG43373 INTRON CG43373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8171916	2R_8171916_SNP [dm3] 2R_12284411_SNP [dm6]	T	A	3.639e^-4	0.806	INTRON CG42700
X	13347656	X_13347656_DEL [dm3] X_13453623_DEL [dm6]	AA	A	3.645e^-4	0.806	INTRON Neto
X	10943838	X_10943838_SNP [dm3] X_11049805_SNP [dm6]	A	G	3.664e^-4	0.806	DOWNSTREAM CG11160 INTERGENIC
3L	2101058	3L_2101058_SNP [dm3] 3L_2101058_SNP [dm6]	G	A	3.665e^-4	0.806	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9864341	2R_9864341_SNP [dm3] 2R_13976836_SNP [dm6]	G	A	3.667e^-4	0.806	SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7695323	3L_7695323_SNP [dm3] 3L_7702223_SNP [dm6]	A	C	3.672e^-4	0.806	INTRON CG32373 & 1 other
2R	19132773	2R_19132773_SNP [dm3] 2R_23245250_SNP [dm6]	C	T	3.676e^-4	0.806	UTR_5_PRIME yip3 INTRON yip3
3L	7696598	3L_7696598_SNP [dm3] 3L_7703498_SNP [dm6]	C	T	3.677e^-4	0.806	INTRON CG32373 & 1 other
X	13829374	X_13829374_SNP [dm3] X_13935341_SNP [dm6]	A	T	3.681e^-4	0.806	INTRON mamo
2L	6557676	2L_6557676_SNP [dm3] 2L_6557676_SNP [dm6]	G	A	3.682e^-4	0.806	UPSTREAM CoVb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12139661	3L_12139661_SNP [dm3] 3L_12146561_SNP [dm6]	C	T	3.687e^-4	0.806	UTR_5_PRIME Nrx-IV UPSTREAM CG5642	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18930426	3L_18930426_SNP [dm3] 3L_18937326_SNP [dm6]	C	T	3.689e^-4	0.806	INTRON CG32204
3L	14384485	3L_14384485_SNP [dm3] 3L_14391385_SNP [dm6]	G	T	3.697e^-4	0.806	INTERGENIC
3R	8126432	3R_8126432_SNP [dm3] 3R_12300710_SNP [dm6]	C	A	3.701e^-4	0.806	INTRON svp	TF binding site mE1_TFBS_cad
3L	10740989	3L_10740989_SNP [dm3] 3L_10747889_SNP [dm6]	A	G	3.702e^-4	0.806	INTERGENIC
2R	19331204	2R_19331204_SNP [dm3] 2R_23443681_SNP [dm6]	C	T	3.704e^-4	0.806	UPSTREAM CG43795 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13258540	3L_13258540_SNP [dm3] 3L_13265440_SNP [dm6]	G	A	3.711e^-4	0.806	INTRON caps
2R	559460	2R_559460_SNP [dm3] 2R_4671955_SNP [dm6]	A	T	3.731e^-4	0.806	UTR_5_PRIME CG17883	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	14403972	2L_14403972_SNP [dm3] 2L_14403972_SNP [dm6]	C	T	3.736e^-4	0.806	INTRON elB	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	11368576	3L_11368576_SNP [dm3] 3L_11375476_SNP [dm6]	T	C	3.741e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	12988989	X_12988989_SNP [dm3] X_13094956_SNP [dm6]	T	C	3.742e^-4	0.806	SYNONYMOUS_CODING CG2200 DOWNSTREAM lic & 1 other
3R	22281415	3R_22281415_SNP [dm3] 3R_26455693_SNP [dm6]	A	G	3.744e^-4	0.806	UTR_3_PRIME Pdf DOWNSTREAM CG43117
2L	13862885	2L_13862885_SNP [dm3] 2L_13862885_SNP [dm6]	G	A	3.763e^-4	0.806	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	10492012	3R_10492012_SNP [dm3] 3R_14666290_SNP [dm6]	A	C	3.764e^-4	0.806	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_chinmo
2R	17043916	2R_17043916_SNP [dm3] 2R_21156411_SNP [dm6]	T	C	3.770e^-4	0.806	INTRON CG30389	TF binding site BDTNP1_TFBS_twi
3L	1268294	3L_1268294_SNP [dm3] 3L_1268294_SNP [dm6]	A	T	3.771e^-4	0.806	INTRON CG9134
3R	23811263	3R_23811263_INS [dm3] 3R_27985541_INS [dm6]	T	TT	3.774e^-4	0.806	INTRON betaTub97EF
3R	2210016	3R_2210016_SNP [dm3] 3R_6384294_SNP [dm6]	T	A	3.776e^-4	0.806	UPSTREAM godzilla INTRON godzilla	TF binding site BDTNP1_TFBS_da
2R	9257611	2R_9257611_SNP [dm3] 2R_13370106_SNP [dm6]	G	C	3.780e^-4	0.806	INTERGENIC
3L	9094499	3L_9094499_SNP [dm3] 3L_9101399_SNP [dm6]	T	G	3.781e^-4	0.806	UTR_3_PRIME bol DOWNSTREAM bol
2L	13994929	2L_13994929_SNP [dm3] 2L_13994929_SNP [dm6]	C	T	3.782e^-4	0.806	INTRON rk
2R	18241426	2R_18241426_SNP [dm3] 2R_22353921_SNP [dm6]	C	T	3.792e^-4	0.806	INTRON Liprin-gamma
X	13452122	X_13452122_SNP [dm3] X_13558089_SNP [dm6]	C	T	3.795e^-4	0.806	DOWNSTREAM CG32631 INTERGENIC
3L	16647328	3L_16647328_SNP [dm3] 3L_16654228_SNP [dm6]	T	A	3.797e^-4	0.806	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
X	3170388	X_3170388_SNP [dm3] X_3276355_SNP [dm6]	T	C	3.807e^-4	0.806	INTRON dnc
3R	19223386	3R_19223386_SNP [dm3] 3R_23397664_SNP [dm6]	T	G	3.810e^-4	0.806	INTERGENIC
2R	17934127	2R_17934127_SNP [dm3] 2R_22046622_SNP [dm6]	C	T	3.815e^-4	0.806	INTERGENIC
2L	9993458	2L_9993458_SNP [dm3] 2L_9993458_SNP [dm6]	G	T	3.825e^-4	0.806	SYNONYMOUS_CODING bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6847843	2R_6847843_SNP [dm3] 2R_10960338_SNP [dm6]	C	T	3.826e^-4	0.806	INTERGENIC
2L	669392	2L_669392_SNP [dm3] 2L_669392_SNP [dm6]	A	G	3.831e^-4	0.806	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	19821925	2L_19821925_SNP [dm3] 2L_19821925_SNP [dm6]	C	T	3.838e^-4	0.806	INTRON sick
2L	7104831	2L_7104831_SNP [dm3] 2L_7104831_SNP [dm6]	A	T	3.840e^-4	0.806	INTRON Pvf3
X	19320275	X_19320275_SNP [dm3] X_19426242_SNP [dm6]	T	C	3.841e^-4	0.806	INTRON kek5
2L	8467760	2L_8467760_SNP [dm3] 2L_8467760_SNP [dm6]	A	T	3.841e^-4	0.806	INTRON d	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	22280918	3R_22280918_SNP [dm3] 3R_26455196_SNP [dm6]	A	G	3.853e^-4	0.806	DOWNSTREAM Pdf & 2 others INTERGENIC
2R	16748749	2R_16748749_SNP [dm3] 2R_20861244_SNP [dm6]	C	T	3.854e^-4	0.806	INTERGENIC
2L	9805915	2L_9805915_SNP [dm3] 2L_9805915_SNP [dm6]	G	T	3.854e^-4	0.806	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17170591	2R_17170591_SNP [dm3] 2R_21283086_SNP [dm6]	C	T	3.865e^-4	0.806	NON_SYNONYMOUS_CODING MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22242149	X_22242149_SNP [dm3] X_22840313_SNP [dm6]	A	T	3.876e^-4	0.806	INTRON fog & 1 other
2R	4909807	2R_4909807_SNP [dm3] 2R_9022302_SNP [dm6]	C	T	3.878e^-4	0.806	NON_SYNONYMOUS_CODING CG8170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3302001	2L_3302001_SNP [dm3] 2L_3302001_SNP [dm6]	G	A	3.894e^-4	0.806	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	19739853	X_19739853_DEL [dm3] X_19845820_DEL [dm6]	TATGT	T	3.898e^-4	0.806	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14072033	2L_14072033_SNP [dm3] 2L_14072033_SNP [dm6]	A	G	3.900e^-4	0.806	INTRON nAChRalpha5
2R	16657576	2R_16657576_SNP [dm3] 2R_20770071_SNP [dm6]	G	A	3.902e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	7351189	X_7351189_SNP [dm3] X_7457156_SNP [dm6]	G	A	3.902e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13267934	2R_13267934_SNP [dm3] 2R_17380429_SNP [dm6]	G	T	3.904e^-4	0.806	INTERGENIC
3R	24562958	3R_24562958_SNP [dm3] 3R_28737236_SNP [dm6]	C	A	3.904e^-4	0.806	UTR_3_PRIME AstA-R2 DOWNSTREAM AstA-R2
2L	938954	2L_938954_SNP [dm3] 2L_938954_SNP [dm6]	A	G	3.904e^-4	0.806	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	11051101	3L_11051101_SNP [dm3] 3L_11058001_SNP [dm6]	A	T	3.906e^-4	0.806	INTRON CG7888	TF binding site mE1_TFBS_cad
3R	9571297	3R_9571297_SNP [dm3] 3R_13745575_SNP [dm6]	T	A	3.909e^-4	0.806	INTRON CG34383
2R	13942329	2R_13942329_SNP [dm3] 2R_18054824_SNP [dm6]	A	C	3.920e^-4	0.806	UPSTREAM CR45313 & 1 other INTERGENIC
X	17006273	X_17006273_SNP [dm3] X_17112240_SNP [dm6]	G	A	3.922e^-4	0.806	INTRON CG5004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17432791	2R_17432791_INS [dm3] 2R_21545286_INS [dm6]	T	TT	3.927e^-4	0.806	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4861223	2L_4861223_SNP [dm3] 2L_4861223_SNP [dm6]	C	A	3.933e^-4	0.806	INTRON pog
2R	18655681	2R_18655681_SNP [dm3] 2R_22768176_SNP [dm6]	C	A	3.938e^-4	0.806	INTRON CG42260
2R	14991122	2R_14991122_SNP [dm3] 2R_19103617_SNP [dm6]	T	C	3.945e^-4	0.806	INTRON 5-HT1A
3L	23683633	3L_23683633_SNP [dm3] 3L_23690533_SNP [dm6]	A	G	3.950e^-4	0.806	DOWNSTREAM CR45174 & 1 other INTERGENIC
3L	12555431	3L_12555431_SNP [dm3] 3L_12562331_SNP [dm6]	C	T	3.955e^-4	0.806	INTRON sowah
2L	6239558	2L_6239558_SNP [dm3] 2L_6239558_SNP [dm6]	T	C	3.961e^-4	0.806	INTERGENIC
3L	16757073	3L_16757073_SNP [dm3] 3L_16763973_SNP [dm6]	T	C	3.965e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3012844	X_3012844_SNP [dm3] X_3118811_SNP [dm6]	G	A	3.972e^-4	0.806	INTRON kirre
2R	8199642	2R_8199642_SNP [dm3] 2R_12312137_SNP [dm6]	A	G	3.978e^-4	0.806	SPLICE_SITE_REGION CG30203 INTRON CG30203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5132732	3L_5132732_SNP [dm3] 3L_5139632_SNP [dm6]	G	A	3.980e^-4	0.806	UTR_5_PRIME CHMP2B UPSTREAM Prpk DOWNSTREAM CG4611 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	8734709	3L_8734709_SNP [dm3] 3L_8741609_SNP [dm6]	A	G	3.981e^-4	0.806	INTRON Prm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19988252	2L_19988252_SNP [dm3] 2L_19988252_SNP [dm6]	C	T	3.992e^-4	0.806	INTRON CG43861
2L	9172546	2L_9172546_SNP [dm3] 2L_9172546_SNP [dm6]	C	A	3.993e^-4	0.806	INTRON tai
3L	4112491	3L_4112491_SNP [dm3] 3L_4112491_SNP [dm6]	G	A	4.003e^-4	0.806	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10485229	2R_10485229_SNP [dm3] 2R_14597724_SNP [dm6]	C	T	4.007e^-4	0.806	SYNONYMOUS_CODING RpI1
3R	25065214	3R_25065214_SNP [dm3] 3R_29239492_SNP [dm6]	G	A	4.010e^-4	0.806	NON_SYNONYMOUS_CODING CG31427 UPSTREAM CG11951
X	22198889	X_22198889_DEL [dm3] X_22797053_DEL [dm6]	CATTCGAATGATTCTCTAAG...	C	4.026e^-4	0.806	INTRON CR44997
2R	12848074	2R_12848074_INS [dm3] 2R_16960569_INS [dm6]	T	TATGT	4.027e^-4	0.806	UPSTREAM CG9010 INTERGENIC
2R	17366653	2R_17366653_SNP [dm3] 2R_21479148_SNP [dm6]	T	C	4.027e^-4	0.806	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	9675809	3L_9675809_SNP [dm3] 3L_9682709_SNP [dm6]	G	A	4.034e^-4	0.806	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5871915	2L_5871915_SNP [dm3] 2L_5871915_SNP [dm6]	G	A	4.037e^-4	0.806	INTRON rau	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	5427878	2L_5427878_SNP [dm3] 2L_5427878_SNP [dm6]	T	C	4.039e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8172422	2R_8172422_SNP [dm3] 2R_12284917_SNP [dm6]	G	A	4.040e^-4	0.806	INTRON CG42700
2L	18158362	2L_18158362_SNP [dm3] 2L_18158362_SNP [dm6]	T	C	4.042e^-4	0.806	NON_SYNONYMOUS_CODING CG7200	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
2L	3448410	2L_3448410_SNP [dm3] 2L_3448410_SNP [dm6]	T	C	4.050e^-4	0.806	DOWNSTREAM CG2772 INTERGENIC
2L	13768026	2L_13768026_SNP [dm3] 2L_13768026_SNP [dm6]	G	T	4.070e^-4	0.806	INTRON TM9SF4
3L	16647279	3L_16647279_SNP [dm3] 3L_16654179_SNP [dm6]	T	A	4.070e^-4	0.806	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
X	14515652	X_14515652_SNP [dm3] X_14621619_SNP [dm6]	A	G	4.075e^-4	0.806	INTRON NetA
3L	18557881	3L_18557881_SNP [dm3] 3L_18564781_SNP [dm6]	A	T	4.087e^-4	0.806	INTRON AstC-R1
2L	7907211	2L_7907211_SNP [dm3] 2L_7907211_SNP [dm6]	A	C	4.089e^-4	0.806	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6557690	2L_6557690_SNP [dm3] 2L_6557690_SNP [dm6]	C	T	4.090e^-4	0.806	UPSTREAM CoVb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15669596	3L_15669596_SNP [dm3] 3L_15676496_SNP [dm6]	C	T	4.090e^-4	0.806	INTERGENIC
X	893194	X_893194_SNP [dm3] X_999161_SNP [dm6]	A	T	4.091e^-4	0.806	INTERGENIC
X	15645009	X_15645009_SNP [dm3] X_15750976_SNP [dm6]	A	C	4.095e^-4	0.806	UTR_3_PRIME CG8239 DOWNSTREAM Graf	TF binding site mE1_TFBS_cad
3L	16738212	3L_16738212_SNP [dm3] 3L_16745112_SNP [dm6]	C	A	4.095e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	18006551	2R_18006551_SNP [dm3] 2R_22119046_SNP [dm6]	G	T	4.096e^-4	0.806	INTRON Vrp1
2R	19941987	2R_19941987_SNP [dm3] 2R_24054464_SNP [dm6]	C	T	4.097e^-4	0.806	SYNONYMOUS_CODING ppk29 UPSTREAM CG13563
2L	669411	2L_669411_SNP [dm3] 2L_669411_SNP [dm6]	C	T	4.098e^-4	0.806	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	13351897	2L_13351897_SNP [dm3] 2L_13351897_SNP [dm6]	A	G	4.102e^-4	0.806	INTRON CG9395	TF binding site mE1_TFBS_cad
2L	7998838	2L_7998838_SNP [dm3] 2L_7998838_SNP [dm6]	G	T	4.111e^-4	0.806	UPSTREAM Sirup & 1 other DOWNSTREAM Wwox INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	17672102	3L_17672102_INS [dm3] 3L_17679002_INS [dm6]	AG	TTACATT	4.114e^-4	0.806	INTRON CG34251
2R	8292378	2R_8292378_SNP [dm3] 2R_12404873_SNP [dm6]	T	A	4.115e^-4	0.806	UTR_3_PRIME Cpr49Ae	TF binding site BDTNP1_TFBS_twi
X	15662613	X_15662613_SNP [dm3] X_15768580_SNP [dm6]	T	C	4.120e^-4	0.806	SYNONYMOUS_CODING CG17209	TF binding site mE1_TFBS_cad
X	4763467	X_4763467_SNP [dm3] X_4869434_SNP [dm6]	C	A	4.123e^-4	0.806	INTRON CG42594	TF binding site mE1_TFBS_inv
2L	13182621	2L_13182621_SNP [dm3] 2L_13182621_SNP [dm6]	G	A	4.127e^-4	0.806	UPSTREAM CG5458 & 1 other INTRON CG5287	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23766471	3L_23766471_SNP [dm3] 3L_23773371_SNP [dm6]	C	G	4.128e^-4	0.806	INTERGENIC
2L	19813596	2L_19813596_SNP [dm3] 2L_19813596_SNP [dm6]	G	T	4.135e^-4	0.806	DOWNSTREAM CG13962 & 1 other INTRON sick
3R	19423771	3R_19423771_SNP [dm3] 3R_23598049_SNP [dm6]	G	A	4.136e^-4	0.806	SYNONYMOUS_CODING CG10183	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6165220	2L_6165220_SNP [dm3] 2L_6165220_SNP [dm6]	C	T	4.139e^-4	0.806	INTERGENIC
2L	3032294	2L_3032294_SNP [dm3] 2L_3032294_SNP [dm6]	A	G	4.145e^-4	0.806	UTR_3_PRIME GABPI & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	10603489	3L_10603489_SNP [dm3] 3L_10610389_SNP [dm6]	T	C	4.156e^-4	0.806	INTERGENIC
3L	18230911	3L_18230911_SNP [dm3] 3L_18237811_SNP [dm6]	C	T	4.157e^-4	0.806	INTERGENIC
3L	18230927	3L_18230927_SNP [dm3] 3L_18237827_SNP [dm6]	T	C	4.157e^-4	0.806	INTERGENIC
2L	12317213	2L_12317213_SNP [dm3] 2L_12317213_SNP [dm6]	C	T	4.158e^-4	0.806	UPSTREAM CR45283 EXON CR45283
X	14520875	X_14520875_SNP [dm3] X_14626842_SNP [dm6]	C	G	4.160e^-4	0.806	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18668949	3L_18668949_SNP [dm3] 3L_18675849_SNP [dm6]	T	A	4.165e^-4	0.806	UTR_5_PRIME GNBP1 UPSTREAM GNBP2
2R	16120239	2R_16120239_SNP [dm3] 2R_20232734_SNP [dm6]	C	A	4.165e^-4	0.806	UPSTREAM tRNA:G3:56EFb INTRON CG11044
X	17171021	X_17171021_INS [dm3] X_17276988_INS [dm6]	T	GG	4.167e^-4	0.806	INTRON f
X	17171025	X_17171025_MNP [dm3] X_17276992_MNP [dm6]	TTCC	AAAT	4.167e^-4	0.806	INTRON f
X	17171033	X_17171033_SNP [dm3] X_17277000_SNP [dm6]	T	C	4.167e^-4	0.806	INTRON f
2R	12744586	2R_12744586_SNP [dm3] 2R_16857081_SNP [dm6]	G	T	4.168e^-4	0.806	UPSTREAM snoRNA:Dek-a INTRON Dek	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	10614047	2R_10614047_SNP [dm3] 2R_14726542_SNP [dm6]	A	G	4.175e^-4	0.806	INTERGENIC
2R	8164603	2R_8164603_SNP [dm3] 2R_12277098_SNP [dm6]	A	T	4.210e^-4	0.806	UTR_3_PRIME Cam DOWNSTREAM Cam
3L	13468443	3L_13468443_SNP [dm3] 3L_13475343_SNP [dm6]	T	A	4.213e^-4	0.806	UPSTREAM CG10089 INTERGENIC
2L	7332920	2L_7332920_SNP [dm3] 2L_7332920_SNP [dm6]	C	A	4.214e^-4	0.806	UPSTREAM Wnt6 INTERGENIC
2L	7332926	2L_7332926_SNP [dm3] 2L_7332926_SNP [dm6]	A	T	4.214e^-4	0.806	UPSTREAM Wnt6 INTERGENIC
3L	18174385	3L_18174385_SNP [dm3] 3L_18181285_SNP [dm6]	A	G	4.218e^-4	0.806	INTRON W
2L	7906805	2L_7906805_SNP [dm3] 2L_7906805_SNP [dm6]	A	C	4.220e^-4	0.806	INTRON Snoo
3L	1533743	3L_1533743_SNP [dm3] 3L_1533743_SNP [dm6]	T	C	4.228e^-4	0.806	SYNONYMOUS_CODING CG12090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16647322	3L_16647322_SNP [dm3] 3L_16654222_SNP [dm6]	G	C	4.229e^-4	0.806	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2R	18983410	2R_18983410_SNP [dm3] 2R_23095887_SNP [dm6]	G	A	4.246e^-4	0.806	INTERGENIC
2R	16657718	2R_16657718_SNP [dm3] 2R_20770213_SNP [dm6]	G	A	4.247e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16658001	2R_16658001_SNP [dm3] 2R_20770496_SNP [dm6]	G	A	4.247e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21997495	3R_21997495_SNP [dm3] 3R_26171773_SNP [dm6]	A	G	4.249e^-4	0.806	INTRON CG31323
X	1619010	X_1619010_SNP [dm3] X_1724977_SNP [dm6]	A	T	4.250e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	891839	X_891839_SNP [dm3] X_997806_SNP [dm6]	A	C	4.250e^-4	0.806	INTERGENIC
2R	7300502	2R_7300502_SNP [dm3] 2R_11412997_SNP [dm6]	A	C	4.262e^-4	0.806	INTRON Drip
3R	5294609	3R_5294609_SNP [dm3] 3R_9468887_SNP [dm6]	T	C	4.276e^-4	0.806	SYNONYMOUS_CODING CG16779	TF binding site mE1_TFBS_chinmo
X	19567131	X_19567131_SNP [dm3] X_19673098_SNP [dm6]	A	G	4.280e^-4	0.806	SYNONYMOUS_CODING et DOWNSTREAM Zw	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	771565	3L_771565_SNP [dm3] 3L_771565_SNP [dm6]	G	A	4.288e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_sens
2L	4584311	2L_4584311_SNP [dm3] 2L_4584311_SNP [dm6]	A	G	4.289e^-4	0.806	INTRON dp
2L	940186	2L_940186_SNP [dm3] 2L_940186_SNP [dm6]	C	G	4.291e^-4	0.806	INTRON CG4341
2R	18489215	2R_18489215_SNP [dm3] 2R_22601710_SNP [dm6]	C	T	4.292e^-4	0.806	SYNONYMOUS_CODING CG4294	TF binding site mE1_TFBS_sens
3L	16647343	3L_16647343_SNP [dm3] 3L_16654243_SNP [dm6]	T	G	4.294e^-4	0.806	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
X	21029467	X_21029467_INS [dm3] X_21158440_INS [dm6]	T	TGTAAAAGTT	4.299e^-4	0.806	INTERGENIC	transposable element FlyBase
3L	19995487	3L_19995487_SNP [dm3] 3L_20002387_SNP [dm6]	C	A	4.299e^-4	0.806	UTR_3_PRIME Tom20 UPSTREAM CG7668 DOWNSTREAM Tom20	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Stat92E
3R	24778507	3R_24778507_SNP [dm3] 3R_28952785_SNP [dm6]	G	A	4.304e^-4	0.806	INTRON CG14521
3L	16647274	3L_16647274_SNP [dm3] 3L_16654174_SNP [dm6]	T	C	4.314e^-4	0.806	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2R	12003131	2R_12003131_SNP [dm3] 2R_16115626_SNP [dm6]	C	A	4.316e^-4	0.806	INTRON Asph
X	16876646	X_16876646_SNP [dm3] X_16982613_SNP [dm6]	G	T	4.317e^-4	0.806	INTRON CG45002
3L	10905762	3L_10905762_SNP [dm3] 3L_10912662_SNP [dm6]	A	T	4.321e^-4	0.806	INTERGENIC
3L	11066236	3L_11066236_SNP [dm3] 3L_11073136_SNP [dm6]	G	A	4.329e^-4	0.806	SYNONYMOUS_CODING Mocs1 UTR_3_PRIME Mocs1 DOWNSTREAM l_3_01239
X	12971646	X_12971646_SNP [dm3] X_13077613_SNP [dm6]	A	T	4.338e^-4	0.806	UTR_3_PRIME rad	TF binding site mE1_TFBS_kn
2R	11509682	2R_11509682_SNP [dm3] 2R_15622177_SNP [dm6]	G	A	4.342e^-4	0.806	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	14554751	X_14554751_SNP [dm3] X_14660718_SNP [dm6]	C	T	4.348e^-4	0.806	INTERGENIC
X	14554753	X_14554753_SNP [dm3] X_14660720_SNP [dm6]	C	G	4.348e^-4	0.806	INTERGENIC
2R	4091445	2R_4091445_SNP [dm3] 2R_8203940_SNP [dm6]	C	T	4.349e^-4	0.806	DOWNSTREAM CG14756 INTRON LRP1
3L	10624067	3L_10624067_SNP [dm3] 3L_10630967_SNP [dm6]	G	A	4.356e^-4	0.806	UPSTREAM CG42536 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	1601798	2L_1601798_SNP [dm3] 2L_1601798_SNP [dm6]	C	T	4.359e^-4	0.806	SYNONYMOUS_CODING haf INTRON CG31935	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6312441	3R_6312441_SNP [dm3] 3R_10486719_SNP [dm6]	A	C	4.359e^-4	0.806	INTERGENIC
2L	14072036	2L_14072036_SNP [dm3] 2L_14072036_SNP [dm6]	T	C	4.361e^-4	0.806	INTRON nAChRalpha5
3L	8007643	3L_8007643_DEL [dm3] 3L_8014543_DEL [dm6]	TGCTACGATGTATCAGTTGT...	T	4.362e^-4	0.806	INTRON nmo
X	19428970	X_19428970_SNP [dm3] X_19534937_SNP [dm6]	C	G	4.365e^-4	0.806	INTRON CG32532
2R	3080267	2R_3080267_SNP [dm3] 2R_7192762_SNP [dm6]	G	T	4.367e^-4	0.806	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_prd
X	11354963	X_11354963_SNP [dm3] X_11460930_SNP [dm6]	A	C	4.368e^-4	0.806	INTRON CG43155
3R	1925145	3R_1925145_SNP [dm3] 3R_6099423_SNP [dm6]	G	A	4.370e^-4	0.806	INTRON Gasp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	8199360	2R_8199360_SNP [dm3] 2R_12311855_SNP [dm6]	C	T	4.372e^-4	0.806	SYNONYMOUS_CODING CG30203

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.241e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2180 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	1388905	3R_1388905_SNP [dm3] 3R_5563183_SNP [dm6]	A	T	4.167e^-7	0.602	UTR_5_PRIME Pi4KIIalpha DOWNSTREAM CG14671	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18703687	2R_18703687_SNP [dm3] 2R_22816182_SNP [dm6]	G	C	6.419e^-7	0.602	UPSTREAM CG30271 DOWNSTREAM stl INTERGENIC
2L	14361074	2L_14361074_SNP [dm3] 2L_14361074_SNP [dm6]	C	T	1.338e^-6	0.762	SYNONYMOUS_CODING Pgant35A UPSTREAM spel1 EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3302407	2L_3302407_SNP [dm3] 2L_3302407_SNP [dm6]	T	G	2.416e^-6	0.762	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16698554	3L_16698554_SNP [dm3] 3L_16705454_SNP [dm6]	G	C	3.459e^-6	0.762	SYNONYMOUS_CODING CG9692 UTR_5_PRIME CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_sens
2L	3302398	2L_3302398_SNP [dm3] 2L_3302398_SNP [dm6]	A	T	3.640e^-6	0.762	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3302390	2L_3302390_SNP [dm3] 2L_3302390_SNP [dm6]	A	C	3.644e^-6	0.762	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19035391	2L_19035391_SNP [dm3] 2L_19035391_SNP [dm6]	G	A	4.080e^-6	0.762	UPSTREAM mib2 & 1 other INTRON mib2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	1396092	3R_1396092_SNP [dm3] 3R_5570370_SNP [dm6]	C	T	4.299e^-6	0.762	UTR_3_PRIME Rheb UPSTREAM CRMP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	17235323	3L_17235323_SNP [dm3] 3L_17242223_SNP [dm6]	T	A	4.343e^-6	0.762	UPSTREAM CG6512 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	17235328	3L_17235328_SNP [dm3] 3L_17242228_SNP [dm6]	T	A	4.471e^-6	0.762	UPSTREAM CG6512 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	9788410	3L_9788410_SNP [dm3] 3L_9795310_SNP [dm6]	G	A	7.236e^-6	0.838	INTRON Zasp67
2L	18623115	2L_18623115_SNP [dm3] 2L_18623115_SNP [dm6]	G	C	7.371e^-6	0.838	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
X	18953480	X_18953480_SNP [dm3] X_19059447_SNP [dm6]	G	A	7.410e^-6	0.838	INTRON CG14190
3L	2399311	3L_2399311_SNP [dm3] 3L_2399311_SNP [dm6]	G	A	7.617e^-6	0.838	INTRON CG45186
2R	17989684	2R_17989684_DEL [dm3] 2R_22102179_DEL [dm6]	TTGGCGGCTGAGACCAGTTT...	T	8.631e^-6	0.838	UPSTREAM CG6613 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7332906	2L_7332906_SNP [dm3] 2L_7332906_SNP [dm6]	T	A	8.810e^-6	0.838	UPSTREAM Wnt6 INTERGENIC
3L	15665947	3L_15665947_SNP [dm3] 3L_15672847_SNP [dm6]	T	A	9.333e^-6	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	19035253	2L_19035253_SNP [dm3] 2L_19035253_SNP [dm6]	G	A	9.490e^-6	0.838	UPSTREAM mib2 & 1 other INTRON mib2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	1562220	X_1562220_SNP [dm3] X_1668187_SNP [dm6]	G	A	9.673e^-6	0.838	SYNONYMOUS_CODING dor DOWNSTREAM CG3740 INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3302213	2L_3302213_SNP [dm3] 2L_3302213_SNP [dm6]	T	C	1.047e^-5	0.838	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11896371	2L_11896371_SNP [dm3] 2L_11896371_SNP [dm6]	A	G	1.166e^-5	0.838	SYNONYMOUS_CODING Pde1c INTRON Pde1c
2L	18623067	2L_18623067_SNP [dm3] 2L_18623067_SNP [dm6]	A	G	1.200e^-5	0.838	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
2L	3302234	2L_3302234_SNP [dm3] 2L_3302234_SNP [dm6]	A	G	1.244e^-5	0.838	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	931011	2L_931011_SNP [dm3] 2L_931011_SNP [dm6]	C	G	1.346e^-5	0.838	INTRON CG4341
2L	5153991	2L_5153991_SNP [dm3] 2L_5153991_SNP [dm6]	C	T	1.366e^-5	0.838	INTRON Msp300
2L	931000	2L_931000_SNP [dm3] 2L_931000_SNP [dm6]	A	T	1.393e^-5	0.838	INTRON CG4341
2L	3302174	2L_3302174_SNP [dm3] 2L_3302174_SNP [dm6]	G	T	1.410e^-5	0.838	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14854273	2L_14854273_SNP [dm3] 2L_14854273_SNP [dm6]	A	G	1.434e^-5	0.838	INTERGENIC
3L	17221180	3L_17221180_SNP [dm3] 3L_17228080_SNP [dm6]	G	A	1.445e^-5	0.838	INTRON Rbp6
2L	3302376	2L_3302376_SNP [dm3] 2L_3302376_SNP [dm6]	C	G	1.504e^-5	0.838	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17154399	X_17154399_SNP [dm3] X_17260366_SNP [dm6]	G	A	1.645e^-5	0.838	INTRON f	TF binding site mE1_TFBS_chinmo
2L	3302372	2L_3302372_SNP [dm3] 2L_3302372_SNP [dm6]	T	A	1.650e^-5	0.838	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14360945	2L_14360945_SNP [dm3] 2L_14360945_SNP [dm6]	A	G	1.671e^-5	0.838	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18921967	3L_18921967_SNP [dm3] 3L_18928867_SNP [dm6]	C	G	1.763e^-5	0.838	INTRON CG32204
3L	17229101	3L_17229101_SNP [dm3] 3L_17236001_SNP [dm6]	T	A	1.982e^-5	0.838	UTR_5_PRIME Rbp6
2L	16817282	2L_16817282_SNP [dm3] 2L_16817282_SNP [dm6]	G	A	1.994e^-5	0.838	UTR_5_PRIME mdy INTRON CG13280 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14399221	2L_14399221_SNP [dm3] 2L_14399221_SNP [dm6]	G	A	2.167e^-5	0.838	INTRON elB
2R	17881936	2R_17881936_DEL [dm3] 2R_21994431_DEL [dm6]	TTTATGC	A	2.237e^-5	0.838	INTRON CG34370
2R	17881946	2R_17881946_SNP [dm3] 2R_21994441_SNP [dm6]	T	A	2.237e^-5	0.838	INTRON CG34370
2L	17583296	2L_17583296_SNP [dm3] 2L_17583296_SNP [dm6]	C	T	2.320e^-5	0.838	UPSTREAM CR45111 INTERGENIC
2R	9264160	2R_9264160_SNP [dm3] 2R_13376655_SNP [dm6]	T	A	2.324e^-5	0.838	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2L	7906546	2L_7906546_SNP [dm3] 2L_7906546_SNP [dm6]	A	G	2.348e^-5	0.838	INTRON Snoo
2L	3302197	2L_3302197_SNP [dm3] 2L_3302197_SNP [dm6]	A	T	2.384e^-5	0.838	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12890726	3L_12890726_SNP [dm3] 3L_12897626_SNP [dm6]	C	A	2.435e^-5	0.838	INTERGENIC
2R	17881997	2R_17881997_SNP [dm3] 2R_21994492_SNP [dm6]	A	T	2.524e^-5	0.838	INTRON CG34370
3L	17225746	3L_17225746_SNP [dm3] 3L_17232646_SNP [dm6]	C	A	2.542e^-5	0.838	INTRON Rbp6
3L	2431972	3L_2431972_INS [dm3] 3L_2431972_INS [dm6]	T	GC	2.602e^-5	0.838	INTRON CG45186
3L	9788584	3L_9788584_SNP [dm3] 3L_9795484_SNP [dm6]	C	A	2.703e^-5	0.838	INTRON Zasp67
2R	19400429	2R_19400429_SNP [dm3] 2R_23512906_SNP [dm6]	A	T	2.724e^-5	0.838	UPSTREAM CG3906 INTERGENIC
3L	11789752	3L_11789752_SNP [dm3] 3L_11796652_SNP [dm6]	T	G	2.855e^-5	0.838	INTRON Klp68D	TF binding site mE1_TFBS_sens
3L	1531067	3L_1531067_SNP [dm3] 3L_1531067_SNP [dm6]	G	A	2.895e^-5	0.838	SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	9788347	3L_9788347_SNP [dm3] 3L_9795247_SNP [dm6]	T	C	3.110e^-5	0.838	INTRON Zasp67
3R	18687852	3R_18687852_SNP [dm3] 3R_22862130_SNP [dm6]	C	A	3.128e^-5	0.838	INTERGENIC
2R	11458578	2R_11458578_SNP [dm3] 2R_15571073_SNP [dm6]	A	G	3.145e^-5	0.838	SPLICE_SITE_REGION Cdk5 UPSTREAM CG30466 INTRON CG30466 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	1344703	3R_1344703_SNP [dm3] 3R_5518981_SNP [dm6]	A	G	3.155e^-5	0.838	INTRON Nmdar1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16467315	X_16467315_SNP [dm3] X_16573282_SNP [dm6]	G	T	3.226e^-5	0.838	INTRON CanA-14F
2R	9264154	2R_9264154_SNP [dm3] 2R_13376649_SNP [dm6]	C	T	3.249e^-5	0.838	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264159	2R_9264159_SNP [dm3] 2R_13376654_SNP [dm6]	T	A	3.249e^-5	0.838	INTRON CG10814	TF binding site mE1_TFBS_chinmo
X	16467314	X_16467314_SNP [dm3] X_16573281_SNP [dm6]	T	C	3.293e^-5	0.838	INTRON CanA-14F
2R	13865240	2R_13865240_SNP [dm3] 2R_17977735_SNP [dm6]	C	T	3.326e^-5	0.838	SYNONYMOUS_CODING dpr13
2R	15177829	2R_15177829_INS [dm3] 2R_19290324_INS [dm6]	A	AAA	3.333e^-5	0.838	DOWNSTREAM CG18607 & 1 other INTRON FK506-bp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	20119551	3R_20119551_SNP [dm3] 3R_24293829_SNP [dm6]	A	G	3.366e^-5	0.838	SYNONYMOUS_CODING CG5715 DOWNSTREAM CG6364	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15669596	3L_15669596_SNP [dm3] 3L_15676496_SNP [dm6]	C	T	3.385e^-5	0.838	INTERGENIC
3R	5139077	3R_5139077_SNP [dm3] 3R_9313355_SNP [dm6]	T	A	3.416e^-5	0.838	INTRON CG8861	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12890705	3L_12890705_SNP [dm3] 3L_12897605_SNP [dm6]	A	G	3.452e^-5	0.838	INTERGENIC
2L	3300951	2L_3300951_SNP [dm3] 2L_3300951_SNP [dm6]	C	A	3.466e^-5	0.838	INTRON CG9663
2L	14405421	2L_14405421_SNP [dm3] 2L_14405421_SNP [dm6]	A	G	3.490e^-5	0.838	INTRON elB	TF binding site mE1_TFBS_cad
2L	16883743	2L_16883743_SNP [dm3] 2L_16883743_SNP [dm6]	T	C	3.499e^-5	0.838	INTRON CG31743 & 1 other
3L	2431983	3L_2431983_SNP [dm3] 3L_2431983_SNP [dm6]	G	A	3.517e^-5	0.838	INTRON CG45186
3R	25772129	3R_25772129_SNP [dm3] 3R_29946407_SNP [dm6]	G	A	3.526e^-5	0.838	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
3L	18902987	3L_18902987_DEL [dm3] 3L_18909887_DEL [dm6]	GG	G	3.625e^-5	0.838	SPLICE_SITE_REGION Ir75d UTR_3_PRIME CG14077 DOWNSTREAM CG6841 INTRON Ir75d
2L	11406334	2L_11406334_SNP [dm3] 2L_11406334_SNP [dm6]	C	G	3.628e^-5	0.838	INTERGENIC	regulatory region REDfly_CRMs
3R	25411596	3R_25411596_SNP [dm3] 3R_29585874_SNP [dm6]	C	G	3.652e^-5	0.838	INTERGENIC
2L	3300762	2L_3300762_SNP [dm3] 2L_3300762_SNP [dm6]	C	A	3.652e^-5	0.838	INTRON CG9663
2L	3296223	2L_3296223_SNP [dm3] 2L_3296223_SNP [dm6]	C	A	3.703e^-5	0.838	SYNONYMOUS_CODING CG9663	TF binding site mE1_TFBS_sens
3L	17231456	3L_17231456_INS [dm3] 3L_17238356_INS [dm6]	C	CGGCGGC	3.727e^-5	0.838	UPSTREAM Rbp6 DOWNSTREAM CG6512 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	16944061	2L_16944061_SNP [dm3] 2L_16944061_SNP [dm6]	A	T	3.732e^-5	0.838	DOWNSTREAM CR43053 INTERGENIC
3L	9788348	3L_9788348_SNP [dm3] 3L_9795248_SNP [dm6]	G	A	3.753e^-5	0.838	INTRON Zasp67
3L	9788372	3L_9788372_SNP [dm3] 3L_9795272_SNP [dm6]	G	A	3.753e^-5	0.838	INTRON Zasp67
3L	9788433	3L_9788433_SNP [dm3] 3L_9795333_SNP [dm6]	C	T	3.753e^-5	0.838	INTRON Zasp67
2L	18617120	2L_18617120_SNP [dm3] 2L_18617120_SNP [dm6]	T	C	3.815e^-5	0.838	UPSTREAM MESR3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	1479876	3R_1479876_SNP [dm3] 3R_5654154_SNP [dm6]	G	A	3.829e^-5	0.838	UPSTREAM MED27 INTRON elm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12107277	2R_12107277_SNP [dm3] 2R_16219772_SNP [dm6]	C	T	3.928e^-5	0.838	UPSTREAM tRNA:CR30240 & 1 other DOWNSTREAM tRNA:CR30239 INTRON mrj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3300726	2L_3300726_SNP [dm3] 2L_3300726_SNP [dm6]	T	G	3.951e^-5	0.838	INTRON CG9663
2L	18623342	2L_18623342_SNP [dm3] 2L_18623342_SNP [dm6]	C	T	3.961e^-5	0.838	INTRON MESR3	TF binding site BDTNP1_TFBS_dl
2L	3300761	2L_3300761_SNP [dm3] 2L_3300761_SNP [dm6]	T	A	3.981e^-5	0.838	INTRON CG9663
3L	16738212	3L_16738212_SNP [dm3] 3L_16745112_SNP [dm6]	C	A	4.030e^-5	0.838	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17794999	2L_17794999_SNP [dm3] 2L_17794999_SNP [dm6]	T	C	4.117e^-5	0.838	INTRON CadN2
2R	18704731	2R_18704731_SNP [dm3] 2R_22817226_SNP [dm6]	G	T	4.143e^-5	0.838	UPSTREAM CG30271 INTRON CG30271
3L	15643042	3L_15643042_SNP [dm3] 3L_15649942_SNP [dm6]	A	T	4.143e^-5	0.838	UTR_5_PRIME Eig71Eb UPSTREAM Eig71Ea & 1 other DOWNSTREAM CG43083
2L	796569	2L_796569_SNP [dm3] 2L_796569_SNP [dm6]	A	G	4.206e^-5	0.838	INTERGENIC
2R	12159298	2R_12159298_SNP [dm3] 2R_16271793_SNP [dm6]	A	T	4.362e^-5	0.838	UTR_5_PRIME Khc UPSTREAM CG33017	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	332208	2L_332208_SNP [dm3] 2L_332208_SNP [dm6]	A	C	4.449e^-5	0.838	UTR_5_PRIME CG31921 INTRON Plc21C	TF binding site mE1_TFBS_cad
2R	13865246	2R_13865246_SNP [dm3] 2R_17977741_SNP [dm6]	T	C	4.468e^-5	0.838	SYNONYMOUS_CODING dpr13
2L	928740	2L_928740_SNP [dm3] 2L_928740_SNP [dm6]	C	T	4.521e^-5	0.838	INTRON CG4341
3L	9670993	3L_9670993_SNP [dm3] 3L_9677893_SNP [dm6]	T	C	4.572e^-5	0.838	INTRON fry	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
2L	7906908	2L_7906908_SNP [dm3] 2L_7906908_SNP [dm6]	G	A	4.634e^-5	0.838	INTRON Snoo
2R	19010900	2R_19010900_SNP [dm3] 2R_23123377_SNP [dm6]	T	C	4.639e^-5	0.838	DOWNSTREAM Klp59C INTERGENIC
3L	9788434	3L_9788434_SNP [dm3] 3L_9795334_SNP [dm6]	C	T	4.663e^-5	0.838	INTRON Zasp67
2R	8529365	2R_8529365_SNP [dm3] 2R_12641860_SNP [dm6]	A	G	4.699e^-5	0.838	SYNONYMOUS_CODING CG8785	TF binding site mE1_TFBS_cad
3L	2829422	3L_2829422_SNP [dm3] 3L_2829422_SNP [dm6]	T	C	4.725e^-5	0.838	INTRON CG43444
3L	17255515	3L_17255515_SNP [dm3] 3L_17262415_SNP [dm6]	C	T	4.804e^-5	0.838	INTRON CR43870
3L	17255523	3L_17255523_SNP [dm3] 3L_17262423_SNP [dm6]	A	T	4.804e^-5	0.838	INTRON CR43870
3L	17221969	3L_17221969_SNP [dm3] 3L_17228869_SNP [dm6]	C	A	4.811e^-5	0.838	INTRON Rbp6
2L	795974	2L_795974_DEL [dm3] 2L_795974_DEL [dm6]	GGGAAGTGGAGTGGAAAAAC...	G	4.848e^-5	0.838	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3302001	2L_3302001_SNP [dm3] 2L_3302001_SNP [dm6]	G	A	4.883e^-5	0.838	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13442804	2L_13442804_SNP [dm3] 2L_13442804_SNP [dm6]	T	C	5.040e^-5	0.838	UPSTREAM CR45683 INTRON CG42784	TF binding site mE1_TFBS_cad
2L	7275116	2L_7275116_SNP [dm3] 2L_7275116_SNP [dm6]	A	G	5.076e^-5	0.838	INTRON Wnt4	TF binding site BDTNP1_TFBS_da
3L	2829423	3L_2829423_SNP [dm3] 3L_2829423_SNP [dm6]	A	T	5.105e^-5	0.838	INTRON CG43444
3R	21831172	3R_21831172_SNP [dm3] 3R_26005450_SNP [dm6]	A	G	5.116e^-5	0.838	SYNONYMOUS_CODING E_spl_mbeta-HLH DOWNSTREAM CR45038	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2R	19372292	2R_19372292_SNP [dm3] 2R_23484769_SNP [dm6]	G	A	5.118e^-5	0.838	INTRON CG43795
3L	17255525	3L_17255525_DEL [dm3] 3L_17262425_DEL [dm6]	GAAGAAGG	TTCA	5.232e^-5	0.838	INTRON CR43870
3L	17255535	3L_17255535_DEL [dm3] 3L_17262435_DEL [dm6]	AGG	C	5.232e^-5	0.838	INTRON CR43870
3L	15644062	3L_15644062_SNP [dm3] 3L_15650962_SNP [dm6]	C	T	5.270e^-5	0.838	DOWNSTREAM Eig71Ec & 1 other INTRON CG43084
3L	15644069	3L_15644069_SNP [dm3] 3L_15650969_SNP [dm6]	C	T	5.270e^-5	0.838	DOWNSTREAM Eig71Ec & 1 other INTRON CG43084
3L	1416590	3L_1416590_SNP [dm3] 3L_1416590_SNP [dm6]	C	T	5.277e^-5	0.838	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	795671	2L_795671_SNP [dm3] 2L_795671_SNP [dm6]	G	C	5.369e^-5	0.838	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	24480791	3R_24480791_SNP [dm3] 3R_28655069_SNP [dm6]	A	G	5.399e^-5	0.838	INTERGENIC
2R	12003621	2R_12003621_SNP [dm3] 2R_16116116_SNP [dm6]	G	A	5.422e^-5	0.838	NON_SYNONYMOUS_CODING Asph UTR_3_PRIME Asph UPSTREAM Jhedup
2L	7906418	2L_7906418_SNP [dm3] 2L_7906418_SNP [dm6]	A	T	5.460e^-5	0.838	INTRON Snoo
3L	2399286	3L_2399286_SNP [dm3] 3L_2399286_SNP [dm6]	A	G	5.543e^-5	0.838	INTRON CG45186
2L	7906479	2L_7906479_SNP [dm3] 2L_7906479_SNP [dm6]	A	T	5.552e^-5	0.838	INTRON Snoo
2L	18617110	2L_18617110_SNP [dm3] 2L_18617110_SNP [dm6]	T	A	5.580e^-5	0.838	UPSTREAM MESR3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25245400	3R_25245400_SNP [dm3] 3R_29419678_SNP [dm6]	C	T	5.666e^-5	0.838	INTRON Ptp99A
3L	11789647	3L_11789647_SNP [dm3] 3L_11796547_SNP [dm6]	T	C	5.674e^-5	0.838	SYNONYMOUS_CODING Klp68D	TF binding site mE1_TFBS_sens
X	1558287	X_1558287_SNP [dm3] X_1664254_SNP [dm6]	A	G	5.731e^-5	0.838	UTR_5_PRIME Mur2B UTR_3_PRIME br UPSTREAM dor	TF binding site BDTNP1_TFBS_dl
2R	18376223	2R_18376223_SNP [dm3] 2R_22488718_SNP [dm6]	T	C	5.816e^-5	0.838	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
2L	16944050	2L_16944050_SNP [dm3] 2L_16944050_SNP [dm6]	C	T	5.826e^-5	0.838	DOWNSTREAM CR43053 INTERGENIC
3L	15644067	3L_15644067_SNP [dm3] 3L_15650967_SNP [dm6]	T	C	5.832e^-5	0.838	DOWNSTREAM Eig71Ec & 1 other INTRON CG43084
X	16809836	X_16809836_SNP [dm3] X_16915803_SNP [dm6]	T	G	5.852e^-5	0.838	INTRON CG4928
2R	13692810	2R_13692810_SNP [dm3] 2R_17805305_SNP [dm6]	G	A	5.972e^-5	0.848	INTRON grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16090817	2L_16090817_SNP [dm3] 2L_16090817_SNP [dm6]	G	A	6.203e^-5	0.851	INTERGENIC
X	1560800	X_1560800_SNP [dm3] X_1666767_SNP [dm6]	C	T	6.236e^-5	0.851	NON_SYNONYMOUS_CODING dor INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	20220202	2R_20220202_SNP [dm3] 2R_24332679_SNP [dm6]	A	G	6.247e^-5	0.851	SYNONYMOUS_CODING slbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16939727	2R_16939727_SNP [dm3] 2R_21052222_SNP [dm6]	C	T	6.298e^-5	0.851	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16738382	3L_16738382_SNP [dm3] 3L_16745282_SNP [dm6]	G	C	6.332e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	10762496	3L_10762496_DEL [dm3] 3L_10769396_DEL [dm6]	TGTATTT	T	6.382e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	23654242	3R_23654242_SNP [dm3] 3R_27828520_SNP [dm6]	G	A	6.440e^-5	0.851	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	1557007	X_1557007_SNP [dm3] X_1662974_SNP [dm6]	C	T	6.451e^-5	0.851	UTR_3_PRIME br INTRON Mur2B
2R	17242908	2R_17242908_SNP [dm3] 2R_21355403_SNP [dm6]	G	A	6.541e^-5	0.851	UTR_3_PRIME cv-2
3R	5100327	3R_5100327_SNP [dm3] 3R_9274605_SNP [dm6]	G	T	6.605e^-5	0.851	INTERGENIC
2L	13458227	2L_13458227_DEL [dm3] 2L_13458227_DEL [dm6]	TCTT	G	6.644e^-5	0.851	DOWNSTREAM CR45684 & 1 other INTRON CG42784
2L	18617113	2L_18617113_SNP [dm3] 2L_18617113_SNP [dm6]	T	C	6.659e^-5	0.851	UPSTREAM MESR3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11406413	2L_11406413_SNP [dm3] 2L_11406413_SNP [dm6]	A	C	6.682e^-5	0.851	INTERGENIC	regulatory region REDfly_CRMs
3L	7264344	3L_7264344_SNP [dm3] 3L_7271244_SNP [dm6]	G	A	6.788e^-5	0.851	INTRON unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7332920	2L_7332920_SNP [dm3] 2L_7332920_SNP [dm6]	C	A	6.835e^-5	0.851	UPSTREAM Wnt6 INTERGENIC
2L	7332926	2L_7332926_SNP [dm3] 2L_7332926_SNP [dm6]	A	T	6.835e^-5	0.851	UPSTREAM Wnt6 INTERGENIC
3R	1498952	3R_1498952_SNP [dm3] 3R_5673230_SNP [dm6]	C	T	6.947e^-5	0.851	INTRON Atg17	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	15279739	2L_15279739_SNP [dm3] 2L_15279739_SNP [dm6]	G	A	6.983e^-5	0.851	UPSTREAM CR45349 DOWNSTREAM CR43682 INTERGENIC
X	18953462	X_18953462_SNP [dm3] X_19059429_SNP [dm6]	A	T	6.991e^-5	0.851	INTRON CG14190
X	18953475	X_18953475_SNP [dm3] X_19059442_SNP [dm6]	A	G	6.991e^-5	0.851	INTRON CG14190
3R	23912018	3R_23912018_SNP [dm3] 3R_28086296_SNP [dm6]	T	A	7.041e^-5	0.851	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi
2R	15833590	2R_15833590_SNP [dm3] 2R_19946085_SNP [dm6]	A	C	7.057e^-5	0.851	UTR_3_PRIME CG42691 UPSTREAM CG42690
3R	9614075	3R_9614075_SNP [dm3] 3R_13788353_SNP [dm6]	A	C	7.094e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13510398	2R_13510398_DEL [dm3] 2R_17622893_DEL [dm6]	TT	T	7.264e^-5	0.851	INTRON CG10936
2R	19430489	2R_19430489_SNP [dm3] 2R_23542966_SNP [dm6]	C	G	7.331e^-5	0.851	NON_SYNONYMOUS_CODING Gr59f UPSTREAM Gr59e	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13458219	2L_13458219_INS [dm3] 2L_13458219_INS [dm6]	A	AA	7.407e^-5	0.851	DOWNSTREAM CR45684 & 1 other INTRON CG42784
2L	19615353	2L_19615353_SNP [dm3] 2L_19615353_SNP [dm6]	T	A	7.493e^-5	0.851	INTRON Lar
2R	19523752	2R_19523752_SNP [dm3] 2R_23636229_SNP [dm6]	T	C	7.507e^-5	0.851	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19523753	2R_19523753_SNP [dm3] 2R_23636230_SNP [dm6]	G	A	7.507e^-5	0.851	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	16664008	2R_16664008_SNP [dm3] 2R_20776503_SNP [dm6]	G	C	7.528e^-5	0.851	UPSTREAM CG43709 DOWNSTREAM CG43710 INTERGENIC
2R	7290386	2R_7290386_SNP [dm3] 2R_11402881_SNP [dm6]	A	G	7.587e^-5	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18777467	X_18777467_SNP [dm3] X_18883434_SNP [dm6]	A	G	7.600e^-5	0.851	UTR_3_PRIME CG34401
2R	19628995	2R_19628995_SNP [dm3] 2R_23741472_SNP [dm6]	G	T	7.624e^-5	0.851	INTRON egl
2R	12159338	2R_12159338_SNP [dm3] 2R_16271833_SNP [dm6]	A	T	7.676e^-5	0.851	UTR_5_PRIME Khc UPSTREAM CG33017	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7272806	3L_7272806_SNP [dm3] 3L_7279706_SNP [dm6]	G	C	7.954e^-5	0.851	INTRON unc-13-4A
2R	8329118	2R_8329118_SNP [dm3] 2R_12441613_SNP [dm6]	C	A	7.977e^-5	0.851	UPSTREAM CG30334 INTRON Dyb
2L	13686056	2L_13686056_SNP [dm3] 2L_13686056_SNP [dm6]	G	T	8.052e^-5	0.851	INTRON CG31814
3L	3249609	3L_3249609_SNP [dm3] 3L_3249609_SNP [dm6]	A	G	8.117e^-5	0.851	DOWNSTREAM CG43389 EXON CR43626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15460663	3R_15460663_SNP [dm3] 3R_19634941_SNP [dm6]	A	G	8.137e^-5	0.851	UPSTREAM CG34138 INTRON subdued
X	4965621	X_4965621_SNP [dm3] X_5071588_SNP [dm6]	T	C	8.198e^-5	0.851	UTR_3_PRIME CG32767 DOWNSTREAM ovo
3L	13616228	3L_13616228_SNP [dm3] 3L_13623128_SNP [dm6]	C	A	8.243e^-5	0.851	INTRON bru-3
2R	19000973	2R_19000973_SNP [dm3] 2R_23113450_SNP [dm6]	T	A	8.295e^-5	0.851	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14398881	2R_14398881_SNP [dm3] 2R_18511376_SNP [dm6]	T	A	8.299e^-5	0.851	INTERGENIC
X	2590247	X_2590247_SNP [dm3] X_2696214_SNP [dm6]	A	G	8.348e^-5	0.851	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9657947	3L_9657947_INS [dm3] 3L_9664847_INS [dm6]	A	AA	8.379e^-5	0.851	INTRON fry
2L	18617118	2L_18617118_SNP [dm3] 2L_18617118_SNP [dm6]	T	C	8.453e^-5	0.851	UPSTREAM MESR3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9609437	2R_9609437_SNP [dm3] 2R_13721932_SNP [dm6]	A	G	8.540e^-5	0.851	INTRON fas
2L	3299194	2L_3299194_SNP [dm3] 2L_3299194_SNP [dm6]	G	C	8.689e^-5	0.851	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	1380521	3R_1380521_SNP [dm3] 3R_5554799_SNP [dm6]	A	G	8.698e^-5	0.851	UPSTREAM Snm1 & 1 other INTERGENIC	transposable element FlyBase
2L	14294338	2L_14294338_SNP [dm3] 2L_14294338_SNP [dm6]	C	T	8.726e^-5	0.851	INTRON wb EXON CR43640	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14600465	2R_14600465_DEL [dm3] 2R_18712960_DEL [dm6]	GT	G	8.731e^-5	0.851	INTERGENIC
3L	18540740	3L_18540740_SNP [dm3] 3L_18547640_SNP [dm6]	T	A	8.876e^-5	0.851	INTERGENIC
X	1567526	X_1567526_SNP [dm3] X_1673493_SNP [dm6]	T	C	8.930e^-5	0.851	UTR_3_PRIME hfw & 1 other DOWNSTREAM hfw
3L	13468985	3L_13468985_SNP [dm3] 3L_13475885_SNP [dm6]	A	C	9.270e^-5	0.851	INTERGENIC
3R	13394141	3R_13394141_SNP [dm3] 3R_17568419_SNP [dm6]	G	A	9.277e^-5	0.851	UTR_3_PRIME Hmx DOWNSTREAM Hmx
2R	14207413	2R_14207413_SNP [dm3] 2R_18319908_SNP [dm6]	T	C	9.280e^-5	0.851	INTRON sbb
2R	17127454	2R_17127454_SNP [dm3] 2R_21239949_SNP [dm6]	C	T	9.318e^-5	0.851	INTRON ASPP
2R	12003605	2R_12003605_SNP [dm3] 2R_16116100_SNP [dm6]	C	T	9.334e^-5	0.851	SYNONYMOUS_CODING Asph UTR_3_PRIME Asph
2L	15161242	2L_15161242_SNP [dm3] 2L_15161242_SNP [dm6]	T	C	9.365e^-5	0.851	DOWNSTREAM CG4168 & 1 other INTERGENIC
X	15678226	X_15678226_SNP [dm3] X_15784193_SNP [dm6]	A	T	9.462e^-5	0.851	UTR_3_PRIME Paf-AHalpha UPSTREAM Efhc1.1
X	5758854	X_5758854_SNP [dm3] X_5864821_SNP [dm6]	A	G	9.525e^-5	0.851	SYNONYMOUS_CODING CG43137
2R	6384198	2R_6384198_SNP [dm3] 2R_10496693_SNP [dm6]	A	T	9.665e^-5	0.851	UTR_3_PRIME lola INTRON lola
2R	18337651	2R_18337651_SNP [dm3] 2R_22450146_SNP [dm6]	C	T	9.668e^-5	0.851	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	3580925	3L_3580925_SNP [dm3] 3L_3580925_SNP [dm6]	C	A	9.725e^-5	0.851	INTRON Eip63E
2R	18305472	2R_18305472_SNP [dm3] 2R_22417967_SNP [dm6]	G	A	9.733e^-5	0.851	UTR_3_PRIME qkr58E-2 DOWNSTREAM mRpS29
3L	17255518	3L_17255518_SNP [dm3] 3L_17262418_SNP [dm6]	A	C	9.904e^-5	0.851	INTRON CR43870
X	18953805	X_18953805_SNP [dm3] X_19059772_SNP [dm6]	G	A	9.975e^-5	0.851	INTRON CG14190
3L	17227260	3L_17227260_SNP [dm3] 3L_17234160_SNP [dm6]	T	C	1.007e^-4	0.851	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
X	19429475	X_19429475_SNP [dm3] X_19535442_SNP [dm6]	G	T	1.014e^-4	0.851	INTRON CG32532
2R	12879535	2R_12879535_SNP [dm3] 2R_16992030_SNP [dm6]	G	C	1.016e^-4	0.851	INTRON Cbp53E
2R	12163197	2R_12163197_SNP [dm3] 2R_16275692_SNP [dm6]	A	T	1.016e^-4	0.851	SYNONYMOUS_CODING CG33017
2R	1628630	2R_1628630_SNP [dm3] 2R_5741125_SNP [dm6]	A	T	1.017e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2R	19195565	2R_19195565_SNP [dm3] 2R_23308042_SNP [dm6]	A	G	1.021e^-4	0.851	DOWNSTREAM Prosbeta5R1 INTERGENIC
2L	3227949	2L_3227949_SNP [dm3] 2L_3227949_SNP [dm6]	C	T	1.029e^-4	0.851	INTERGENIC
2L	14844900	2L_14844900_SNP [dm3] 2L_14844900_SNP [dm6]	C	A	1.029e^-4	0.851	DOWNSTREAM CG15279 INTERGENIC
X	13343445	X_13343445_SNP [dm3] X_13449412_SNP [dm6]	C	T	1.033e^-4	0.851	INTRON Neto
3L	3029019	3L_3029019_SNP [dm3] 3L_3029019_SNP [dm6]	C	G	1.033e^-4	0.851	INTERGENIC
3L	3029029	3L_3029029_SNP [dm3] 3L_3029029_SNP [dm6]	A	C	1.048e^-4	0.851	INTERGENIC
3L	3029039	3L_3029039_SNP [dm3] 3L_3029039_SNP [dm6]	C	T	1.051e^-4	0.851	INTERGENIC
2L	3125394	2L_3125394_SNP [dm3] 2L_3125394_SNP [dm6]	A	T	1.055e^-4	0.851	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14442457	2L_14442457_SNP [dm3] 2L_14442457_SNP [dm6]	G	C	1.058e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10103580	2L_10103580_SNP [dm3] 2L_10103580_SNP [dm6]	A	G	1.059e^-4	0.851	INTRON CG44153 & 1 other
2L	6003397	2L_6003397_INS [dm3] 2L_6003397_INS [dm6]	T	TTT	1.072e^-4	0.851	UTR_3_PRIME Tsp26A UPSTREAM CR43866 DOWNSTREAM Gal
3L	6275043	3L_6275043_INS [dm3] 3L_6281943_INS [dm6]	A	AATA	1.072e^-4	0.851	INTERGENIC
2L	16879587	2L_16879587_SNP [dm3] 2L_16879587_SNP [dm6]	C	A	1.073e^-4	0.851	SYNONYMOUS_CODING CG34313 UTR_5_PRIME CG31743 UPSTREAM CG32832	TF binding site BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12163606	2R_12163606_SNP [dm3] 2R_16276101_SNP [dm6]	G	T	1.084e^-4	0.851	NON_SYNONYMOUS_CODING CG33017
X	2590184	X_2590184_SNP [dm3] X_2696151_SNP [dm6]	C	T	1.085e^-4	0.851	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19524144	2R_19524144_SNP [dm3] 2R_23636621_SNP [dm6]	G	A	1.091e^-4	0.851	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24686021	3R_24686021_SNP [dm3] 3R_28860299_SNP [dm6]	T	C	1.096e^-4	0.851	UPSTREAM Inx3 INTRON spg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12163605	2R_12163605_SNP [dm3] 2R_16276100_SNP [dm6]	C	T	1.101e^-4	0.851	SYNONYMOUS_CODING CG33017
2L	18617035	2L_18617035_SNP [dm3] 2L_18617035_SNP [dm6]	C	T	1.101e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18617114	2L_18617114_SNP [dm3] 2L_18617114_SNP [dm6]	G	A	1.106e^-4	0.851	UPSTREAM MESR3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	321019	3L_321019_SNP [dm3] 3L_321019_SNP [dm6]	G	A	1.109e^-4	0.851	DOWNSTREAM CG32344 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
2L	17856693	2L_17856693_SNP [dm3] 2L_17856693_SNP [dm6]	T	C	1.112e^-4	0.851	INTRON CadN2
3L	12525923	3L_12525923_SNP [dm3] 3L_12532823_SNP [dm6]	T	G	1.112e^-4	0.851	INTRON Tsf2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	14023078	2L_14023078_SNP [dm3] 2L_14023078_SNP [dm6]	A	T	1.118e^-4	0.851	DOWNSTREAM CR31840 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
2L	3406280	2L_3406280_SNP [dm3] 2L_3406280_SNP [dm6]	A	C	1.118e^-4	0.851	INTRON pgant2
3L	17255708	3L_17255708_SNP [dm3] 3L_17262608_SNP [dm6]	C	T	1.133e^-4	0.851	INTRON CR43870
2R	12159331	2R_12159331_SNP [dm3] 2R_16271826_SNP [dm6]	G	A	1.139e^-4	0.851	UTR_5_PRIME Khc UPSTREAM CG33017	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7780423	2L_7780423_SNP [dm3] 2L_7780423_SNP [dm6]	T	C	1.140e^-4	0.851	SYNONYMOUS_CODING Uro
X	19429358	X_19429358_SNP [dm3] X_19535325_SNP [dm6]	C	T	1.150e^-4	0.851	INTRON CG32532
2L	7906805	2L_7906805_SNP [dm3] 2L_7906805_SNP [dm6]	A	C	1.153e^-4	0.851	INTRON Snoo
3L	3042184	3L_3042184_SNP [dm3] 3L_3042184_SNP [dm6]	G	C	1.157e^-4	0.851	UPSTREAM Jafrac2 INTERGENIC
3R	1454132	3R_1454132_SNP [dm3] 3R_5628410_SNP [dm6]	C	T	1.159e^-4	0.851	NON_SYNONYMOUS_CODING CG31551	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19160394	2R_19160394_SNP [dm3] 2R_23272871_SNP [dm6]	G	A	1.166e^-4	0.851	SYNONYMOUS_CODING ord
3R	1702553	3R_1702553_SNP [dm3] 3R_5876831_SNP [dm6]	A	G	1.178e^-4	0.851	SYNONYMOUS_CODING CG34113 INTRON CG34113	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13531297	2R_13531297_SNP [dm3] 2R_17643792_SNP [dm6]	A	T	1.182e^-4	0.851	INTERGENIC
2R	13531299	2R_13531299_SNP [dm3] 2R_17643794_SNP [dm6]	C	A	1.182e^-4	0.851	INTERGENIC
2R	20220016	2R_20220016_SNP [dm3] 2R_24332493_SNP [dm6]	T	G	1.193e^-4	0.851	SYNONYMOUS_CODING slbo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13531296	2R_13531296_SNP [dm3] 2R_17643791_SNP [dm6]	A	T	1.199e^-4	0.851	INTERGENIC
3L	8535457	3L_8535457_SNP [dm3] 3L_8542357_SNP [dm6]	G	A	1.200e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10715654	3L_10715654_SNP [dm3] 3L_10722554_SNP [dm6]	A	T	1.203e^-4	0.851	INTERGENIC
2L	10100493	2L_10100493_SNP [dm3] 2L_10100493_SNP [dm6]	C	T	1.218e^-4	0.851	INTRON CG34109 & 1 other
2R	19089108	2R_19089108_SNP [dm3] 2R_23201585_SNP [dm6]	T	G	1.224e^-4	0.851	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
3L	19246950	3L_19246950_SNP [dm3] 3L_19253850_SNP [dm6]	T	G	1.249e^-4	0.851	UTR_3_PRIME mRpL21 DOWNSTREAM mRpL21
3L	17230774	3L_17230774_SNP [dm3] 3L_17237674_SNP [dm6]	C	G	1.254e^-4	0.851	DOWNSTREAM CG6512 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18606031	3L_18606031_SNP [dm3] 3L_18612931_SNP [dm6]	G	A	1.258e^-4	0.851	SYNONYMOUS_CODING CG32199 INTRON CG4174 & 1 other
X	15678225	X_15678225_SNP [dm3] X_15784192_SNP [dm6]	T	A	1.258e^-4	0.851	UTR_3_PRIME Paf-AHalpha UPSTREAM Efhc1.1
3R	4874732	3R_4874732_SNP [dm3] 3R_9049010_SNP [dm6]	A	C	1.274e^-4	0.851	UPSTREAM Nmdmc INTRON Nmdmc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17795036	2L_17795036_SNP [dm3] 2L_17795036_SNP [dm6]	A	T	1.276e^-4	0.851	INTRON CadN2
3L	17227259	3L_17227259_SNP [dm3] 3L_17234159_SNP [dm6]	T	A	1.283e^-4	0.851	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
3L	17225657	3L_17225657_SNP [dm3] 3L_17232557_SNP [dm6]	A	T	1.286e^-4	0.851	INTRON Rbp6
X	4349559	X_4349559_SNP [dm3] X_4455526_SNP [dm6]	A	G	1.305e^-4	0.851	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7264380	3L_7264380_SNP [dm3] 3L_7271280_SNP [dm6]	A	C	1.310e^-4	0.851	INTRON unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11456770	2L_11456770_SNP [dm3] 2L_11456770_SNP [dm6]	T	A	1.312e^-4	0.851	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	17241243	2R_17241243_SNP [dm3] 2R_21353738_SNP [dm6]	G	A	1.320e^-4	0.851	INTERGENIC
2L	5213639	2L_5213639_SNP [dm3] 2L_5213639_SNP [dm6]	G	C	1.320e^-4	0.851	NON_SYNONYMOUS_CODING CG7742 SPLICE_SITE_REGION CG7742	TF binding site mE1_TFBS_cad
X	17185353	X_17185353_SNP [dm3] X_17291320_SNP [dm6]	A	G	1.322e^-4	0.851	SYNONYMOUS_CODING Fim INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10889394	X_10889394_SNP [dm3] X_10995361_SNP [dm6]	A	T	1.329e^-4	0.851	INTRON CG42339
X	8634868	X_8634868_INS [dm3] X_8740835_INS [dm6]	T	TG	1.330e^-4	0.851	INTERGENIC
3L	7375971	3L_7375971_SNP [dm3] 3L_7382871_SNP [dm6]	G	A	1.340e^-4	0.851	INTRON smid
3L	1416797	3L_1416797_SNP [dm3] 3L_1416797_SNP [dm6]	A	T	1.345e^-4	0.851	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	10817189	3R_10817189_SNP [dm3] 3R_14991467_SNP [dm6]	C	T	1.348e^-4	0.851	INTERGENIC
3L	1066298	3L_1066298_SNP [dm3] 3L_1066298_SNP [dm6]	T	C	1.352e^-4	0.851	INTRON bab1
2L	17805277	2L_17805277_SNP [dm3] 2L_17805277_SNP [dm6]	A	T	1.355e^-4	0.851	INTRON CadN2
2L	596651	2L_596651_SNP [dm3] 2L_596651_SNP [dm6]	C	T	1.356e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	5924755	2L_5924755_SNP [dm3] 2L_5924755_SNP [dm6]	T	A	1.365e^-4	0.851	DOWNSTREAM CR43926 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16738356	3L_16738356_SNP [dm3] 3L_16745256_SNP [dm6]	G	A	1.368e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	23228975	3R_23228975_SNP [dm3] 3R_27403253_SNP [dm6]	A	T	1.381e^-4	0.851	INTRON side
2R	12003131	2R_12003131_SNP [dm3] 2R_16115626_SNP [dm6]	C	A	1.382e^-4	0.851	INTRON Asph
X	13180863	X_13180863_SNP [dm3] X_13286830_SNP [dm6]	G	T	1.386e^-4	0.851	NON_SYNONYMOUS_CODING CG15743	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3296079	2L_3296079_SNP [dm3] 2L_3296079_SNP [dm6]	G	T	1.400e^-4	0.851	SYNONYMOUS_CODING CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17227271	3L_17227271_SNP [dm3] 3L_17234171_SNP [dm6]	A	C	1.400e^-4	0.851	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
2L	4371341	2L_4371341_SNP [dm3] 2L_4371341_SNP [dm6]	G	A	1.407e^-4	0.851	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	13741609	2L_13741609_SNP [dm3] 2L_13741609_SNP [dm6]	G	A	1.408e^-4	0.851	INTERGENIC
X	12261580	X_12261580_SNP [dm3] X_12367547_SNP [dm6]	C	G	1.411e^-4	0.851	INTERGENIC
2L	18617096	2L_18617096_INS [dm3] 2L_18617096_INS [dm6]	C	CA	1.414e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7772801	3L_7772801_SNP [dm3] 3L_7779701_SNP [dm6]	G	C	1.420e^-4	0.851	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7264371	3L_7264371_SNP [dm3] 3L_7271271_SNP [dm6]	G	C	1.426e^-4	0.851	INTRON unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13297469	3L_13297469_SNP [dm3] 3L_13304369_SNP [dm6]	T	G	1.429e^-4	0.851	DOWNSTREAM CR44555 INTERGENIC
3R	1501217	3R_1501217_SNP [dm3] 3R_5675495_SNP [dm6]	A	G	1.442e^-4	0.851	NON_SYNONYMOUS_CODING Atg17	TF binding site mE1_TFBS_cad
X	16659921	X_16659921_SNP [dm3] X_16765888_SNP [dm6]	G	A	1.443e^-4	0.851	INTRON if
2L	9581466	2L_9581466_SNP [dm3] 2L_9581466_SNP [dm6]	A	T	1.444e^-4	0.851	NON_SYNONYMOUS_CODING gcm	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8512465	2R_8512465_SNP [dm3] 2R_12624960_SNP [dm6]	A	G	1.456e^-4	0.851	UPSTREAM CG17760 INTRON CG30054
2R	21009107	2R_21009107_SNP [dm3] 2R_25121584_SNP [dm6]	C	T	1.460e^-4	0.851	INTRON lov	TF binding site BDTNP1_TFBS_dl
3R	1416191	3R_1416191_SNP [dm3] 3R_5590469_SNP [dm6]	T	G	1.468e^-4	0.851	SYNONYMOUS_CODING noi DOWNSTREAM rev7	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv mE1_TFBS_sens
2L	11406470	2L_11406470_SNP [dm3] 2L_11406470_SNP [dm6]	G	T	1.479e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs
X	17570957	X_17570957_SNP [dm3] X_17676924_SNP [dm6]	C	A	1.485e^-4	0.851	INTRON chas	TF binding site BDTNP1_TFBS_sna
2L	18617087	2L_18617087_SNP [dm3] 2L_18617087_SNP [dm6]	G	T	1.486e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10596132	3L_10596132_SNP [dm3] 3L_10603032_SNP [dm6]	T	C	1.488e^-4	0.851	INTERGENIC
2L	13718870	2L_13718870_SNP [dm3] 2L_13718870_SNP [dm6]	C	T	1.491e^-4	0.851	INTERGENIC
2L	4790845	2L_4790845_SNP [dm3] 2L_4790845_SNP [dm6]	C	A	1.496e^-4	0.851	INTRON CG15630
3R	6325461	3R_6325461_SNP [dm3] 3R_10499739_SNP [dm6]	C	T	1.501e^-4	0.851	INTERGENIC
3R	5313808	3R_5313808_SNP [dm3] 3R_9488086_SNP [dm6]	T	A	1.502e^-4	0.851	INTRON CG16779	TF binding site BDTNP1_TFBS_dl
2R	18746216	2R_18746216_SNP [dm3] 2R_22858693_SNP [dm6]	A	T	1.504e^-4	0.851	UTR_5_PRIME inaD
3R	18687209	3R_18687209_SNP [dm3] 3R_22861487_SNP [dm6]	C	T	1.510e^-4	0.851	INTERGENIC
3L	19938313	3L_19938313_SNP [dm3] 3L_19945213_SNP [dm6]	C	A	1.516e^-4	0.851	INTRON Ac76E
2L	13441691	2L_13441691_SNP [dm3] 2L_13441691_SNP [dm6]	G	C	1.520e^-4	0.851	INTRON CG42784 EXON CR45683
2R	18932273	2R_18932273_SNP [dm3] 2R_23044750_SNP [dm6]	G	A	1.521e^-4	0.851	INTRON twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	13529154	2R_13529154_INS [dm3] 2R_17641649_INS [dm6]	A	AA	1.523e^-4	0.851	INTERGENIC
2L	14278442	2L_14278442_SNP [dm3] 2L_14278442_SNP [dm6]	A	C	1.524e^-4	0.851	SYNONYMOUS_CODING wb DOWNSTREAM CG32971	TF binding site mE1_TFBS_HSA
3L	8535460	3L_8535460_SNP [dm3] 3L_8542360_SNP [dm6]	T	C	1.525e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12555588	3L_12555588_SNP [dm3] 3L_12562488_SNP [dm6]	C	T	1.536e^-4	0.851	INTRON sowah
3L	12555420	3L_12555420_INS [dm3] 3L_12562320_INS [dm6]	A	ACTATTAATAATTGCT...	1.537e^-4	0.851	INTRON sowah
3R	10214049	3R_10214049_DEL [dm3] 3R_14388327_DEL [dm6]	CCATTCTC	C	1.543e^-4	0.851	INTERGENIC
3L	17234103	3L_17234103_SNP [dm3] 3L_17241003_SNP [dm6]	T	G	1.544e^-4	0.851	SYNONYMOUS_CODING CG6512	TF binding site mE1_TFBS_cad
2L	18679936	2L_18679936_SNP [dm3] 2L_18679936_SNP [dm6]	C	T	1.555e^-4	0.851	SYNONYMOUS_CODING tos INTRON CG31751
2R	13531209	2R_13531209_SNP [dm3] 2R_17643704_SNP [dm6]	G	C	1.556e^-4	0.851	INTERGENIC
2L	14412035	2L_14412035_SNP [dm3] 2L_14412035_SNP [dm6]	C	A	1.559e^-4	0.851	INTERGENIC
2L	18617111	2L_18617111_SNP [dm3] 2L_18617111_SNP [dm6]	T	G	1.566e^-4	0.851	UPSTREAM MESR3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18852019	2L_18852019_SNP [dm3] 2L_18852019_SNP [dm6]	G	C	1.575e^-4	0.851	INTRON CG17321
X	2590314	X_2590314_SNP [dm3] X_2696281_SNP [dm6]	G	T	1.581e^-4	0.851	INTRON CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12292170	2R_12292170_SNP [dm3] 2R_16404665_SNP [dm6]	T	C	1.583e^-4	0.851	INTRON Sema-2b
2R	9900577	2R_9900577_SNP [dm3] 2R_14013072_SNP [dm6]	A	C	1.583e^-4	0.851	INTRON mam
2L	15755007	2L_15755007_SNP [dm3] 2L_15755007_SNP [dm6]	T	C	1.586e^-4	0.851	SYNONYMOUS_CODING l_2_35Df DOWNSTREAM Gli	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	1396094	3R_1396094_SNP [dm3] 3R_5570372_SNP [dm6]	G	A	1.594e^-4	0.851	UTR_3_PRIME Rheb UPSTREAM CRMP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	3101658	3L_3101658_SNP [dm3] 3L_3101658_SNP [dm6]	C	T	1.596e^-4	0.851	INTRON Cht7
X	18450965	X_18450965_DEL [dm3] X_18556932_DEL [dm6]	GATACACAT	G	1.600e^-4	0.851	INTRON Bx
X	18450996	X_18450996_SNP [dm3] X_18556963_SNP [dm6]	T	C	1.600e^-4	0.851	INTRON Bx
X	18451001	X_18451001_SNP [dm3] X_18556968_SNP [dm6]	T	A	1.600e^-4	0.851	INTRON Bx
2R	4773487	2R_4773487_SNP [dm3] 2R_8885982_SNP [dm6]	G	C	1.606e^-4	0.851	SYNONYMOUS_CODING RyR	TF binding site mE1_TFBS_chinmo
3L	7264361	3L_7264361_SNP [dm3] 3L_7271261_SNP [dm6]	C	G	1.611e^-4	0.851	INTRON unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18617095	2L_18617095_SNP [dm3] 2L_18617095_SNP [dm6]	G	A	1.614e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	9861850	2R_9861850_SNP [dm3] 2R_13974345_SNP [dm6]	G	A	1.616e^-4	0.851	NON_SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad
2R	4184124	2R_4184124_SNP [dm3] 2R_8296619_SNP [dm6]	T	C	1.618e^-4	0.851	INTERGENIC
2L	18070999	2L_18070999_SNP [dm3] 2L_18070999_SNP [dm6]	A	T	1.619e^-4	0.851	DOWNSTREAM rdo INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18617033	2L_18617033_INS [dm3] 2L_18617033_INS [dm6]	G	GCTGTGTTCAGTCAGAAAAC...	1.621e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18652304	2L_18652304_SNP [dm3] 2L_18652304_SNP [dm6]	A	G	1.621e^-4	0.851	SYNONYMOUS_CODING Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17805093	3R_17805093_SNP [dm3] 3R_21979371_SNP [dm6]	T	G	1.624e^-4	0.851	INTRON Eip93F
2R	10299610	2R_10299610_SNP [dm3] 2R_14412105_SNP [dm6]	G	A	1.631e^-4	0.851	NON_SYNONYMOUS_CODING Sin1 UPSTREAM CG17385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	18617013	2L_18617013_SNP [dm3] 2L_18617013_SNP [dm6]	G	C	1.641e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14845076	2L_14845076_INS [dm3] 2L_14845076_INS [dm6]	A	ATGTA	1.647e^-4	0.851	UTR_3_PRIME CG15279
2L	13541073	2L_13541073_SNP [dm3] 2L_13541073_SNP [dm6]	A	T	1.655e^-4	0.851	DOWNSTREAM CG9263 INTRON B4 & 1 other	TF binding site mE1_TFBS_HSA
3R	7271558	3R_7271558_SNP [dm3] 3R_11445836_SNP [dm6]	G	A	1.656e^-4	0.851	INTRON CG17230 & 1 other
3L	17227359	3L_17227359_SNP [dm3] 3L_17234259_SNP [dm6]	C	A	1.657e^-4	0.851	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
3L	12555431	3L_12555431_SNP [dm3] 3L_12562331_SNP [dm6]	C	T	1.659e^-4	0.851	INTRON sowah
2R	18384776	2R_18384776_SNP [dm3] 2R_22497271_SNP [dm6]	C	T	1.672e^-4	0.851	SYNONYMOUS_CODING px	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25772183	3R_25772183_SNP [dm3] 3R_29946461_SNP [dm6]	A	G	1.673e^-4	0.851	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad
2L	928972	2L_928972_SNP [dm3] 2L_928972_SNP [dm6]	C	A	1.674e^-4	0.851	INTRON CG4341
2R	19400426	2R_19400426_SNP [dm3] 2R_23512903_SNP [dm6]	A	G	1.677e^-4	0.851	UPSTREAM CG3906 INTERGENIC
2L	1629115	2L_1629115_SNP [dm3] 2L_1629115_SNP [dm6]	C	T	1.681e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19064931	2R_19064931_SNP [dm3] 2R_23177408_SNP [dm6]	T	C	1.682e^-4	0.851	INTRON CG34371
3R	26996845	3R_26996845_SNP [dm3] 3R_31171123_SNP [dm6]	A	C	1.690e^-4	0.851	SYNONYMOUS_CODING Gycbeta100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17225224	3L_17225224_INS [dm3] 3L_17232124_INS [dm6]	A	ATGTA	1.692e^-4	0.851	INTRON Rbp6
2R	14438087	2R_14438087_SNP [dm3] 2R_18550582_SNP [dm6]	C	A	1.692e^-4	0.851	INTERGENIC
3R	23805229	3R_23805229_SNP [dm3] 3R_27979507_SNP [dm6]	T	A	1.693e^-4	0.851	INTRON betaTub97EF
2R	20217665	2R_20217665_SNP [dm3] 2R_24330142_SNP [dm6]	C	T	1.706e^-4	0.851	EXON CR44810	TF binding site mE1_TFBS_Trl
2L	12761102	2L_12761102_SNP [dm3] 2L_12761102_SNP [dm6]	C	G	1.709e^-4	0.851	INTRON CG15483
X	16790379	X_16790379_DEL [dm3] X_16896346_DEL [dm6]	CTTG	A	1.718e^-4	0.851	UTR_3_PRIME CG33252
2L	15161446	2L_15161446_SNP [dm3] 2L_15161446_SNP [dm6]	C	T	1.724e^-4	0.851	DOWNSTREAM CG4168 & 1 other INTERGENIC
2R	18746650	2R_18746650_SNP [dm3] 2R_22859127_SNP [dm6]	A	T	1.742e^-4	0.851	UPSTREAM inaD INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	792514	3L_792514_SNP [dm3] 3L_792514_SNP [dm6]	T	G	1.744e^-4	0.851	INTERGENIC
3L	10708710	3L_10708710_SNP [dm3] 3L_10715610_SNP [dm6]	C	A	1.755e^-4	0.851	INTERGENIC
3L	11789807	3L_11789807_SNP [dm3] 3L_11796707_SNP [dm6]	T	A	1.758e^-4	0.851	INTRON Klp68D
2L	8178716	2L_8178716_SNP [dm3] 2L_8178716_SNP [dm6]	C	G	1.771e^-4	0.851	SYNONYMOUS_CODING Piezo
2R	11642827	2R_11642827_SNP [dm3] 2R_15755322_SNP [dm6]	G	A	1.781e^-4	0.851	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	18451004	X_18451004_SNP [dm3] X_18556971_SNP [dm6]	A	T	1.793e^-4	0.851	INTRON Bx
2R	18703529	2R_18703529_SNP [dm3] 2R_22816024_SNP [dm6]	A	T	1.799e^-4	0.851	UPSTREAM CG30271 DOWNSTREAM stl INTERGENIC
3R	2999678	3R_2999678_SNP [dm3] 3R_7173956_SNP [dm6]	A	T	1.800e^-4	0.851	INTRON sas	TF binding site mE1_TFBS_cad
2L	18067313	2L_18067313_SNP [dm3] 2L_18067313_SNP [dm6]	A	T	1.801e^-4	0.851	INTRON rdo	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	16753692	2R_16753692_SNP [dm3] 2R_20866187_SNP [dm6]	A	T	1.805e^-4	0.851	SYNONYMOUS_CODING CG15227
3L	7264350	3L_7264350_SNP [dm3] 3L_7271250_SNP [dm6]	G	A	1.814e^-4	0.851	INTRON unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15670046	3L_15670046_SNP [dm3] 3L_15676946_SNP [dm6]	T	G	1.822e^-4	0.851	INTERGENIC
2L	10542072	2L_10542072_SNP [dm3] 2L_10542072_SNP [dm6]	A	G	1.823e^-4	0.851	DOWNSTREAM CR44618 INTERGENIC
2R	12003568	2R_12003568_SNP [dm3] 2R_16116063_SNP [dm6]	T	G	1.847e^-4	0.851	SYNONYMOUS_CODING Asph UTR_3_PRIME Asph
2R	19004895	2R_19004895_SNP [dm3] 2R_23117372_SNP [dm6]	G	C	1.855e^-4	0.851	INTERGENIC
3L	9526648	3L_9526648_SNP [dm3] 3L_9533548_SNP [dm6]	T	A	1.855e^-4	0.851	INTERGENIC
3L	16144844	3L_16144844_SNP [dm3] 3L_16151744_SNP [dm6]	C	T	1.860e^-4	0.851	INTRON CG5151
3L	5486557	3L_5486557_SNP [dm3] 3L_5493457_SNP [dm6]	T	C	1.865e^-4	0.851	EXON CR44520
3L	18811723	3L_18811723_SNP [dm3] 3L_18818623_SNP [dm6]	C	T	1.868e^-4	0.851	INTRON CG14073
3L	2472905	3L_2472905_SNP [dm3] 3L_2472905_SNP [dm6]	C	G	1.874e^-4	0.851	INTRON CG45186
X	19065094	X_19065094_SNP [dm3] X_19171061_SNP [dm6]	G	A	1.876e^-4	0.851	UPSTREAM Inx5 DOWNSTREAM pncr004:X INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	3795659	2L_3795659_SNP [dm3] 2L_3795659_SNP [dm6]	G	C	1.883e^-4	0.851	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_sens
2L	1021528	2L_1021528_SNP [dm3] 2L_1021528_SNP [dm6]	G	T	1.886e^-4	0.851	INTRON IA-2	TF binding site mE1_TFBS_chinmo
3L	7264412	3L_7264412_SNP [dm3] 3L_7271312_SNP [dm6]	A	T	1.887e^-4	0.851	INTRON unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10499507	3R_10499507_SNP [dm3] 3R_14673785_SNP [dm6]	A	G	1.895e^-4	0.851	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
3L	18141365	3L_18141365_SNP [dm3] 3L_18148265_SNP [dm6]	G	A	1.900e^-4	0.851	UPSTREAM CG7330 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	5517572	2R_5517572_SNP [dm3] 2R_9630067_SNP [dm6]	A	G	1.906e^-4	0.851	INTRON Mmp2
3L	12555414	3L_12555414_SNP [dm3] 3L_12562314_SNP [dm6]	T	A	1.918e^-4	0.851	INTRON sowah
2R	19926118	2R_19926118_SNP [dm3] 2R_24038595_SNP [dm6]	C	T	1.920e^-4	0.851	SYNONYMOUS_CODING IntS1 UPSTREAM Not11	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6264230	3L_6264230_DEL [dm3] 3L_6271130_DEL [dm6]	GG	G	1.921e^-4	0.851	INTERGENIC
3R	1454591	3R_1454591_SNP [dm3] 3R_5628869_SNP [dm6]	G	T	1.929e^-4	0.851	NON_SYNONYMOUS_CODING CG31551	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	19388052	X_19388052_SNP [dm3] X_19494019_SNP [dm6]	T	G	1.940e^-4	0.851	NON_SYNONYMOUS_CODING CG12204 DOWNSTREAM CG12203 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	7374879	3L_7374879_SNP [dm3] 3L_7381779_SNP [dm6]	C	T	1.952e^-4	0.851	UPSTREAM smid & 1 other INTRON smid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
X	19388053	X_19388053_SNP [dm3] X_19494020_SNP [dm6]	T	C	1.957e^-4	0.851	SYNONYMOUS_CODING CG12204 DOWNSTREAM CG12203 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3L	14139029	3L_14139029_SNP [dm3] 3L_14145929_SNP [dm6]	G	A	1.959e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	15018576	3L_15018576_SNP [dm3] 3L_15025476_SNP [dm6]	G	A	1.962e^-4	0.851	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18073122	2L_18073122_SNP [dm3] 2L_18073122_SNP [dm6]	G	C	1.975e^-4	0.851	INTERGENIC
2L	13460200	2L_13460200_SNP [dm3] 2L_13460200_SNP [dm6]	A	T	1.982e^-4	0.851	DOWNSTREAM CG42810 INTRON CG42784	TF binding site mE1_TFBS_HSA
3L	11035943	3L_11035943_SNP [dm3] 3L_11042843_SNP [dm6]	G	A	2.000e^-4	0.851	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2R	9979338	2R_9979338_SNP [dm3] 2R_14091833_SNP [dm6]	C	A	2.009e^-4	0.851	DOWNSTREAM CG42287 & 1 other INTRON Prosap
2R	19691257	2R_19691257_INS [dm3] 2R_23803734_INS [dm6]	T	TTGGT	2.015e^-4	0.851	DOWNSTREAM CG30177 & 1 other INTERGENIC
2L	10181645	2L_10181645_SNP [dm3] 2L_10181645_SNP [dm6]	T	C	2.017e^-4	0.851	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3L	11860001	3L_11860001_SNP [dm3] 3L_11866901_SNP [dm6]	G	A	2.020e^-4	0.851	INTRON CG44837
2R	9097132	2R_9097132_SNP [dm3] 2R_13209627_SNP [dm6]	T	C	2.024e^-4	0.851	SYNONYMOUS_CODING FLASH DOWNSTREAM CG30058 & 2 others
2R	11594949	2R_11594949_SNP [dm3] 2R_15707444_SNP [dm6]	G	A	2.024e^-4	0.851	INTERGENIC
2R	15099417	2R_15099417_SNP [dm3] 2R_19211912_SNP [dm6]	T	C	2.026e^-4	0.851	SYNONYMOUS_CODING hppy	TF binding site mE1_TFBS_inv
3R	3011300	3R_3011300_SNP [dm3] 3R_7185578_SNP [dm6]	G	A	2.035e^-4	0.851	SYNONYMOUS_CODING CG10055	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3132858	3L_3132858_SNP [dm3] 3L_3132858_SNP [dm6]	C	T	2.038e^-4	0.851	SYNONYMOUS_CODING CG11537 INTRON CG11537	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6339157	2R_6339157_SNP [dm3] 2R_10451652_SNP [dm6]	A	T	2.053e^-4	0.851	INTRON Galphao & 1 other
3L	12555413	3L_12555413_SNP [dm3] 3L_12562313_SNP [dm6]	T	A	2.057e^-4	0.851	INTRON sowah
2R	12163166	2R_12163166_SNP [dm3] 2R_16275661_SNP [dm6]	C	T	2.059e^-4	0.851	NON_SYNONYMOUS_CODING CG33017
2R	12163188	2R_12163188_SNP [dm3] 2R_16275683_SNP [dm6]	C	G	2.059e^-4	0.851	NON_SYNONYMOUS_CODING CG33017
2R	12163247	2R_12163247_SNP [dm3] 2R_16275742_SNP [dm6]	C	T	2.059e^-4	0.851	NON_SYNONYMOUS_CODING CG33017
3L	8438221	3L_8438221_SNP [dm3] 3L_8445121_SNP [dm6]	C	T	2.061e^-4	0.851	INTRON CG6983	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7269618	3L_7269618_DEL [dm3] 3L_7276518_DEL [dm6]	AA	A	2.069e^-4	0.851	INTRON unc-13-4A
3R	10191214	3R_10191214_SNP [dm3] 3R_14365492_SNP [dm6]	T	C	2.070e^-4	0.851	INTRON NK7.1	TF binding site mE1_TFBS_cnc
2L	16384835	2L_16384835_DEL [dm3] 2L_16384835_DEL [dm6]	CCGCCAAGTTGCTTTCCACA...	C	2.084e^-4	0.851	INTERGENIC
3R	21456516	3R_21456516_SNP [dm3] 3R_25630794_SNP [dm6]	C	T	2.098e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6056168	2R_6056168_SNP [dm3] 2R_10168663_SNP [dm6]	T	A	2.100e^-4	0.851	INTRON KCNQ
2R	19003057	2R_19003057_SNP [dm3] 2R_23115534_SNP [dm6]	A	G	2.104e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16721929	3L_16721929_SNP [dm3] 3L_16728829_SNP [dm6]	A	T	2.115e^-4	0.851	NON_SYNONYMOUS_CODING Dbp73D UPSTREAM PGRP-SB1	TF binding site mE1_TFBS_sens
3R	11709410	3R_11709410_SNP [dm3] 3R_15883688_SNP [dm6]	G	A	2.120e^-4	0.851	INTERGENIC
3R	11709496	3R_11709496_SNP [dm3] 3R_15883774_SNP [dm6]	G	C	2.121e^-4	0.851	INTERGENIC
3L	11793601	3L_11793601_SNP [dm3] 3L_11800501_SNP [dm6]	A	T	2.122e^-4	0.851	DOWNSTREAM tRNA:CR32093 INTRON CG10361
3R	5143384	3R_5143384_INS [dm3] 3R_9317662_INS [dm6]	T	TCACTATAT	2.125e^-4	0.851	INTRON CG8861
2R	8722500	2R_8722500_SNP [dm3] 2R_12834995_SNP [dm6]	C	A	2.127e^-4	0.851	INTERGENIC
2R	12163350	2R_12163350_SNP [dm3] 2R_16275845_SNP [dm6]	C	T	2.127e^-4	0.851	SYNONYMOUS_CODING CG33017
3R	1380775	3R_1380775_SNP [dm3] 3R_5555053_SNP [dm6]	T	C	2.128e^-4	0.851	UPSTREAM Snm1 & 1 other INTERGENIC
3R	14884319	3R_14884319_SNP [dm3] 3R_19058597_SNP [dm6]	G	C	2.131e^-4	0.851	INTRON cdi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19561942	2R_19561942_SNP [dm3] 2R_23674419_SNP [dm6]	T	C	2.133e^-4	0.851	SYNONYMOUS_CODING Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14033461	2L_14033461_SNP [dm3] 2L_14033461_SNP [dm6]	G	C	2.138e^-4	0.851	EXON CR45284
3R	1322710	3R_1322710_SNP [dm3] 3R_5496988_SNP [dm6]	A	G	2.139e^-4	0.851	INTRON CG31547
3L	6242279	3L_6242279_INS [dm3] 3L_6249179_INS [dm6]	C	CTGAGGTGTTGGC...	2.142e^-4	0.851	INTRON Best2
3L	715032	3L_715032_DEL [dm3] 3L_715032_DEL [dm6]	CT	C	2.142e^-4	0.851	UPSTREAM CR45411 INTERGENIC
2L	18876192	2L_18876192_DEL [dm3] 2L_18876192_DEL [dm6]	CC	C	2.142e^-4	0.851	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9264244	2R_9264244_SNP [dm3] 2R_13376739_SNP [dm6]	A	G	2.145e^-4	0.851	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264253	2R_9264253_SNP [dm3] 2R_13376748_SNP [dm6]	C	T	2.145e^-4	0.851	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264268	2R_9264268_SNP [dm3] 2R_13376763_SNP [dm6]	C	T	2.145e^-4	0.851	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	4332470	2R_4332470_SNP [dm3] 2R_8444965_SNP [dm6]	G	T	2.146e^-4	0.851	UPSTREAM mir-986 INTRON Cyp4e2	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2R	16677457	2R_16677457_SNP [dm3] 2R_20789952_SNP [dm6]	G	A	2.152e^-4	0.851	SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
2L	14459257	2L_14459257_SNP [dm3] 2L_14459257_SNP [dm6]	G	A	2.157e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	1496423	3R_1496423_INS [dm3] 3R_5670701_INS [dm6]	C	CCCC	2.160e^-4	0.851	INTRON Atg17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8452375	2L_8452375_SNP [dm3] 2L_8452375_SNP [dm6]	G	A	2.161e^-4	0.851	UPSTREAM fu12 INTRON fu12
3R	4873741	3R_4873741_SNP [dm3] 3R_9048019_SNP [dm6]	C	A	2.181e^-4	0.851	UPSTREAM Rel & 1 other INTRON Nmdmc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	11912408	3L_11912408_SNP [dm3] 3L_11919308_SNP [dm6]	T	A	2.186e^-4	0.851	INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9578295	3L_9578295_SNP [dm3] 3L_9585195_SNP [dm6]	C	T	2.191e^-4	0.851	INTRON CG42673
2R	19000982	2R_19000982_SNP [dm3] 2R_23113459_SNP [dm6]	G	T	2.192e^-4	0.851	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18374780	X_18374780_SNP [dm3] X_18480747_SNP [dm6]	G	A	2.193e^-4	0.851	INTRON Hayan EXON CR45714
2R	12873991	2R_12873991_SNP [dm3] 2R_16986486_SNP [dm6]	A	G	2.202e^-4	0.851	INTRON Cbp53E
2L	14277839	2L_14277839_SNP [dm3] 2L_14277839_SNP [dm6]	G	C	2.203e^-4	0.851	NON_SYNONYMOUS_CODING CG32971 INTRON wb
3L	714998	3L_714998_SNP [dm3] 3L_714998_SNP [dm6]	A	G	2.204e^-4	0.851	UPSTREAM CR45411 INTERGENIC
3L	9578294	3L_9578294_SNP [dm3] 3L_9585194_SNP [dm6]	A	G	2.205e^-4	0.851	INTRON CG42673
3L	9789074	3L_9789074_SNP [dm3] 3L_9795974_SNP [dm6]	T	C	2.217e^-4	0.851	INTRON Zasp67
2R	12016799	2R_12016799_SNP [dm3] 2R_16129294_SNP [dm6]	G	T	2.219e^-4	0.851	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2R	17426102	2R_17426102_SNP [dm3] 2R_21538597_SNP [dm6]	C	T	2.234e^-4	0.851	NON_SYNONYMOUS_CODING CG33226 UPSTREAM CG30287 DOWNSTREAM CG30283 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22859884	3R_22859884_SNP [dm3] 3R_27034162_SNP [dm6]	T	G	2.236e^-4	0.851	INTRON RYa-R	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18628194	3L_18628194_SNP [dm3] 3L_18635094_SNP [dm6]	C	T	2.240e^-4	0.851	INTRON MYPT-75D
2R	19400383	2R_19400383_SNP [dm3] 2R_23512860_SNP [dm6]	C	T	2.246e^-4	0.851	UPSTREAM CG3906 INTERGENIC
2L	3028427	2L_3028427_SNP [dm3] 2L_3028427_SNP [dm6]	T	C	2.247e^-4	0.851	NON_SYNONYMOUS_CODING CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	16981881	X_16981881_SNP [dm3] X_17087848_SNP [dm6]	G	C	2.252e^-4	0.851	UPSTREAM CG8945 INTERGENIC
2R	9836455	2R_9836455_SNP [dm3] 2R_13948950_SNP [dm6]	T	C	2.254e^-4	0.851	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10104328	2R_10104328_SNP [dm3] 2R_14216823_SNP [dm6]	C	T	2.273e^-4	0.851	UPSTREAM mir-308 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	12184335	3L_12184335_SNP [dm3] 3L_12191235_SNP [dm6]	C	T	2.274e^-4	0.851	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13147302	2L_13147302_SNP [dm3] 2L_13147302_SNP [dm6]	T	C	2.275e^-4	0.851	DOWNSTREAM CR44199 INTERGENIC
2L	7906176	2L_7906176_SNP [dm3] 2L_7906176_SNP [dm6]	T	A	2.292e^-4	0.851	INTRON Snoo
3L	3093315	3L_3093315_SNP [dm3] 3L_3093315_SNP [dm6]	T	G	2.295e^-4	0.851	INTRON Cht7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4222485	X_4222485_SNP [dm3] X_4328452_SNP [dm6]	A	C	2.298e^-4	0.851	NON_SYNONYMOUS_CODING CG12693 INTRON norpA	TF binding site BDTNP1_TFBS_twi
2R	9264245	2R_9264245_SNP [dm3] 2R_13376740_SNP [dm6]	A	T	2.303e^-4	0.851	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2L	19615374	2L_19615374_SNP [dm3] 2L_19615374_SNP [dm6]	T	C	2.304e^-4	0.851	INTRON Lar
3R	10371224	3R_10371224_SNP [dm3] 3R_14545502_SNP [dm6]	T	A	2.321e^-4	0.851	INTRON Pde6
2L	3378237	2L_3378237_SNP [dm3] 2L_3378237_SNP [dm6]	C	T	2.324e^-4	0.851	SYNONYMOUS_CODING Ptpa
3L	6242158	3L_6242158_SNP [dm3] 3L_6249058_SNP [dm6]	C	A	2.336e^-4	0.851	INTRON Best2
3L	9094499	3L_9094499_SNP [dm3] 3L_9101399_SNP [dm6]	T	G	2.348e^-4	0.851	UTR_3_PRIME bol DOWNSTREAM bol
2R	17994775	2R_17994775_SNP [dm3] 2R_22107270_SNP [dm6]	A	G	2.355e^-4	0.851	DOWNSTREAM Vrp1 INTRON Vrp1
3L	13866380	3L_13866380_SNP [dm3] 3L_13873280_SNP [dm6]	A	C	2.358e^-4	0.851	INTRON dysc
3L	7264396	3L_7264396_SNP [dm3] 3L_7271296_SNP [dm6]	C	T	2.369e^-4	0.851	INTRON unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19519287	2R_19519287_INS [dm3] 2R_23631764_INS [dm6]	C	CC	2.372e^-4	0.851	UPSTREAM retn INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16908249	X_16908249_SNP [dm3] X_17014216_SNP [dm6]	C	T	2.380e^-4	0.851	INTRON CG45002
3L	10474151	3L_10474151_SNP [dm3] 3L_10481051_SNP [dm6]	G	A	2.383e^-4	0.851	UPSTREAM A2bp1 INTERGENIC
2R	11162211	2R_11162211_SNP [dm3] 2R_15274706_SNP [dm6]	C	T	2.392e^-4	0.851	INTRON Trpm
3L	17255707	3L_17255707_SNP [dm3] 3L_17262607_SNP [dm6]	G	A	2.397e^-4	0.851	INTRON CR43870
X	13698135	X_13698135_DEL [dm3] X_13804102_DEL [dm6]	TTTGT	C	2.398e^-4	0.851	INTRON inaE	TF binding site BDTNP1_TFBS_Med
X	9955407	X_9955407_SNP [dm3] X_10061374_SNP [dm6]	G	C	2.416e^-4	0.851	UPSTREAM Gr9a INTRON CG15312
2R	17868413	2R_17868413_SNP [dm3] 2R_21980908_SNP [dm6]	A	T	2.420e^-4	0.851	INTRON Gr58a
X	12597357	X_12597357_SNP [dm3] X_12703324_SNP [dm6]	C	T	2.427e^-4	0.851	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15519367	X_15519367_SNP [dm3] X_15625334_SNP [dm6]	C	T	2.428e^-4	0.851	INTRON sog	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9262004	2R_9262004_SNP [dm3] 2R_13374499_SNP [dm6]	A	T	2.437e^-4	0.851	INTERGENIC
2L	19828242	2L_19828242_SNP [dm3] 2L_19828242_SNP [dm6]	T	C	2.442e^-4	0.851	SYNONYMOUS_CODING sick UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad
3L	1453601	3L_1453601_SNP [dm3] 3L_1453601_SNP [dm6]	A	G	2.446e^-4	0.851	INTRON Ptp61F
2R	19090712	2R_19090712_SNP [dm3] 2R_23203189_SNP [dm6]	C	G	2.450e^-4	0.851	INTRON CG34371	TF binding site BDTNP1_TFBS_dl
2R	14207195	2R_14207195_SNP [dm3] 2R_18319690_SNP [dm6]	A	G	2.457e^-4	0.851	INTRON sbb
2R	20996865	2R_20996865_SNP [dm3] 2R_25109342_SNP [dm6]	A	G	2.458e^-4	0.851	INTRON lov	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb
2L	3019429	2L_3019429_SNP [dm3] 2L_3019429_SNP [dm6]	T	A	2.470e^-4	0.851	INTRON CG17264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	12662305	X_12662305_SNP [dm3] X_12768272_SNP [dm6]	C	T	2.478e^-4	0.851	INTRON CG3812
X	15958908	X_15958908_DEL [dm3] X_16064875_DEL [dm6]	AC	A	2.489e^-4	0.851	INTRON dpr18	TF binding site BDTNP1_TFBS_z
2L	18425504	2L_18425504_DEL [dm3] 2L_18425504_DEL [dm6]	CCTTTATAAATGT...	C	2.491e^-4	0.851	INTERGENIC
2L	18617020	2L_18617020_SNP [dm3] 2L_18617020_SNP [dm6]	T	C	2.493e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14846699	2L_14846699_SNP [dm3] 2L_14846699_SNP [dm6]	T	A	2.502e^-4	0.851	INTRON CG15279
3L	2999329	3L_2999329_INS [dm3] 3L_2999329_INS [dm6]	G	TGGAAATT	2.508e^-4	0.851	INTERGENIC
2L	7332879	2L_7332879_SNP [dm3] 2L_7332879_SNP [dm6]	A	G	2.513e^-4	0.851	UPSTREAM Wnt6 INTERGENIC
3L	10018066	3L_10018066_SNP [dm3] 3L_10024966_SNP [dm6]	C	T	2.523e^-4	0.851	INTRON dpr6
2R	19088113	2R_19088113_SNP [dm3] 2R_23200590_SNP [dm6]	G	A	2.524e^-4	0.851	INTRON CG34371	TF binding site BDTNP1_TFBS_twi
2L	12655676	2L_12655676_SNP [dm3] 2L_12655676_SNP [dm6]	G	A	2.526e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18535535	3L_18535535_SNP [dm3] 3L_18542435_SNP [dm6]	A	T	2.526e^-4	0.851	INTERGENIC
X	19224717	X_19224717_SNP [dm3] X_19330684_SNP [dm6]	A	G	2.537e^-4	0.851	INTRON nAChRalpha7	transposable element FlyBase
2L	13448786	2L_13448786_SNP [dm3] 2L_13448786_SNP [dm6]	G	A	2.538e^-4	0.851	SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna
X	15889159	X_15889159_SNP [dm3] X_15995126_SNP [dm6]	A	T	2.542e^-4	0.851	UTR_3_PRIME exd
2R	18979229	2R_18979229_SNP [dm3] 2R_23091706_SNP [dm6]	A	G	2.543e^-4	0.851	INTRON CG9876	TF binding site mE1_TFBS_cad
X	17048395	X_17048395_SNP [dm3] X_17154362_SNP [dm6]	C	G	2.544e^-4	0.851	UTR_3_PRIME xmas-2 INTRON xmas-1
3L	10440042	3L_10440042_SNP [dm3] 3L_10446942_SNP [dm6]	A	G	2.545e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14424134	2L_14424134_SNP [dm3] 2L_14424134_SNP [dm6]	A	G	2.547e^-4	0.851	DOWNSTREAM Cpr35B INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13976372	3R_13976372_SNP [dm3] 3R_18150650_SNP [dm6]	C	T	2.554e^-4	0.851	INTERGENIC
3R	26484201	3R_26484201_SNP [dm3] 3R_30658479_SNP [dm6]	A	G	2.562e^-4	0.851	INTERGENIC
3L	9940603	3L_9940603_SNP [dm3] 3L_9947503_SNP [dm6]	T	G	2.564e^-4	0.851	INTRON CG34356
3L	11022930	3L_11022930_SNP [dm3] 3L_11029830_SNP [dm6]	A	T	2.567e^-4	0.851	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6276703	3L_6276703_SNP [dm3] 3L_6283603_SNP [dm6]	C	T	2.568e^-4	0.851	INTERGENIC
2R	18760071	2R_18760071_DEL [dm3] 2R_22872548_DEL [dm6]	CC	C	2.569e^-4	0.851	INTRON CG13532	TF binding site mE1_TFBS_chinmo
2L	19036130	2L_19036130_SNP [dm3] 2L_19036130_SNP [dm6]	A	G	2.569e^-4	0.851	INTRON mib2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	17808853	2L_17808853_SNP [dm3] 2L_17808853_SNP [dm6]	A	G	2.574e^-4	0.851	INTRON CadN2
3L	19253489	3L_19253489_SNP [dm3] 3L_19260389_SNP [dm6]	C	T	2.576e^-4	0.851	INTRON nes EXON CR45210	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	18617093	2L_18617093_SNP [dm3] 2L_18617093_SNP [dm6]	A	T	2.577e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14137525	3R_14137525_SNP [dm3] 3R_18311803_SNP [dm6]	T	C	2.577e^-4	0.851	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17223358	3L_17223358_SNP [dm3] 3L_17230258_SNP [dm6]	G	A	2.578e^-4	0.851	INTRON Rbp6
3R	6175171	3R_6175171_SNP [dm3] 3R_10349449_SNP [dm6]	T	A	2.580e^-4	0.851	NON_SYNONYMOUS_CODING CG31406 UPSTREAM jumu INTRON CG31406
X	6113784	X_6113784_SNP [dm3] X_6219751_SNP [dm6]	T	A	2.581e^-4	0.851	UPSTREAM Efr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9353446	3R_9353446_SNP [dm3] 3R_13527724_SNP [dm6]	G	A	2.583e^-4	0.851	DOWNSTREAM CG42778 INTERGENIC
3R	14906853	3R_14906853_DEL [dm3] 3R_19081131_DEL [dm6]	TTCT	T	2.585e^-4	0.851	INTRON cdi
2L	11795065	2L_11795065_SNP [dm3] 2L_11795065_SNP [dm6]	T	A	2.586e^-4	0.851	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
2L	4790881	2L_4790881_SNP [dm3] 2L_4790881_SNP [dm6]	A	T	2.587e^-4	0.851	INTRON CG15630
2R	12159339	2R_12159339_SNP [dm3] 2R_16271834_SNP [dm6]	C	T	2.589e^-4	0.851	UTR_5_PRIME Khc UPSTREAM CG33017	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	15212913	2R_15212913_SNP [dm3] 2R_19325408_SNP [dm6]	T	C	2.597e^-4	0.851	START_GAINED Rgk1 UTR_5_PRIME Rgk1 INTRON Rgk1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7803619	3L_7803619_DEL [dm3] 3L_7810519_DEL [dm6]	ATA	A	2.615e^-4	0.851	UPSTREAM CG32369 DOWNSTREAM Pdp1 INTERGENIC
2L	11380086	2L_11380086_SNP [dm3] 2L_11380086_SNP [dm6]	T	A	2.615e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs
2L	11380092	2L_11380092_SNP [dm3] 2L_11380092_SNP [dm6]	G	A	2.615e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs
2L	11380211	2L_11380211_SNP [dm3] 2L_11380211_SNP [dm6]	T	A	2.615e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs
3L	17222414	3L_17222414_SNP [dm3] 3L_17229314_SNP [dm6]	T	A	2.620e^-4	0.851	INTRON Rbp6
3L	15687550	3L_15687550_SNP [dm3] 3L_15694450_SNP [dm6]	T	A	2.626e^-4	0.851	INTERGENIC
3R	22486221	3R_22486221_SNP [dm3] 3R_26660499_SNP [dm6]	T	C	2.628e^-4	0.851	INTRON beat-VII
2R	17243366	2R_17243366_SNP [dm3] 2R_21355861_SNP [dm6]	C	T	2.631e^-4	0.851	UTR_3_PRIME cv-2	TF binding site mE1_TFBS_cad
3L	17230825	3L_17230825_SNP [dm3] 3L_17237725_SNP [dm6]	G	A	2.636e^-4	0.851	DOWNSTREAM CG6512 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18679962	2L_18679962_SNP [dm3] 2L_18679962_SNP [dm6]	T	G	2.636e^-4	0.851	SYNONYMOUS_CODING tos INTRON CG31751
2R	17095109	2R_17095109_SNP [dm3] 2R_21207604_SNP [dm6]	C	G	2.648e^-4	0.851	INTRON CG44245 & 1 other
3L	11062735	3L_11062735_SNP [dm3] 3L_11069635_SNP [dm6]	G	T	2.659e^-4	0.851	UPSTREAM Mocs1 DOWNSTREAM SuUR & 1 other INTRON CG6310
3L	16759510	3L_16759510_SNP [dm3] 3L_16766410_SNP [dm6]	G	C	2.659e^-4	0.851	UTR_5_PRIME Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18617088	2L_18617088_DEL [dm3] 2L_18617088_DEL [dm6]	AG	A	2.662e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14979194	2R_14979194_SNP [dm3] 2R_19091689_SNP [dm6]	A	G	2.663e^-4	0.851	INTRON 5-HT1A
X	19443850	X_19443850_SNP [dm3] X_19549817_SNP [dm6]	C	T	2.665e^-4	0.851	INTERGENIC
2L	19295832	2L_19295832_SNP [dm3] 2L_19295832_SNP [dm6]	T	C	2.665e^-4	0.851	INTERGENIC
3L	18628293	3L_18628293_SNP [dm3] 3L_18635193_SNP [dm6]	T	G	2.670e^-4	0.851	INTRON MYPT-75D
3L	18628298	3L_18628298_SNP [dm3] 3L_18635198_SNP [dm6]	C	T	2.678e^-4	0.851	INTRON MYPT-75D
2L	16370093	2L_16370093_SNP [dm3] 2L_16370093_SNP [dm6]	G	T	2.683e^-4	0.851	INTERGENIC
X	2849244	X_2849244_SNP [dm3] X_2955211_SNP [dm6]	A	G	2.684e^-4	0.851	INTRON kirre & 1 other	TF binding site mE1_TFBS_cad
2L	15200510	2L_15200510_SNP [dm3] 2L_15200510_SNP [dm6]	C	T	2.685e^-4	0.851	UPSTREAM CG4168 INTERGENIC
3L	7374058	3L_7374058_SNP [dm3] 3L_7380958_SNP [dm6]	C	T	2.692e^-4	0.851	SYNONYMOUS_CODING SMSr UPSTREAM smid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_Trl
3L	7264353	3L_7264353_SNP [dm3] 3L_7271253_SNP [dm6]	A	C	2.692e^-4	0.851	INTRON unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13633586	3L_13633586_SNP [dm3] 3L_13640486_SNP [dm6]	A	T	2.696e^-4	0.851	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3325242	X_3325242_SNP [dm3] X_3431209_SNP [dm6]	C	T	2.697e^-4	0.851	INTRON CR44999 & 1 other
X	5248899	X_5248899_SNP [dm3] X_5354866_SNP [dm6]	A	T	2.698e^-4	0.851	INTRON SK
2R	14991122	2R_14991122_SNP [dm3] 2R_19103617_SNP [dm6]	T	C	2.704e^-4	0.851	INTRON 5-HT1A
2R	4416148	2R_4416148_SNP [dm3] 2R_8528643_SNP [dm6]	A	C	2.728e^-4	0.851	INTRON mtt
3L	7375725	3L_7375725_SNP [dm3] 3L_7382625_SNP [dm6]	G	A	2.728e^-4	0.851	SYNONYMOUS_CODING smid	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	8897071	X_8897071_SNP [dm3] X_9003038_SNP [dm6]	T	A	2.736e^-4	0.851	INTRON rdgA & 1 other
2L	18775632	2L_18775632_SNP [dm3] 2L_18775632_SNP [dm6]	G	T	2.739e^-4	0.851	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18775633	2L_18775633_SNP [dm3] 2L_18775633_SNP [dm6]	G	C	2.739e^-4	0.851	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6713410	2L_6713410_SNP [dm3] 2L_6713410_SNP [dm6]	G	A	2.745e^-4	0.851	SYNONYMOUS_CODING AkhR	TF binding site mE1_TFBS_chinmo
3L	18628197	3L_18628197_SNP [dm3] 3L_18635097_SNP [dm6]	A	T	2.751e^-4	0.851	INTRON MYPT-75D
3L	9976769	3L_9976769_SNP [dm3] 3L_9983669_SNP [dm6]	C	A	2.764e^-4	0.851	INTRON dpr6
2L	15005759	2L_15005759_SNP [dm3] 2L_15005759_SNP [dm6]	C	T	2.767e^-4	0.851	START_GAINED dyn-p25 UTR_5_PRIME dyn-p25 DOWNSTREAM l_2_35Be	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9552176	3L_9552176_SNP [dm3] 3L_9559076_SNP [dm6]	C	T	2.776e^-4	0.851	INTRON CG42673
3L	3580714	3L_3580714_SNP [dm3] 3L_3580714_SNP [dm6]	C	T	2.784e^-4	0.851	INTRON Eip63E
3R	16983733	3R_16983733_SNP [dm3] 3R_21158011_SNP [dm6]	A	G	2.786e^-4	0.851	INTRON SNF4Agamma
3L	9976332	3L_9976332_DEL [dm3] 3L_9983232_DEL [dm6]	AA	A	2.794e^-4	0.851	INTRON dpr6
2R	16739791	2R_16739791_SNP [dm3] 2R_20852286_SNP [dm6]	C	T	2.796e^-4	0.851	UPSTREAM CG9993 INTERGENIC
2L	18616971	2L_18616971_DEL [dm3] 2L_18616971_DEL [dm6]	AA	A	2.797e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2304592	2L_2304592_SNP [dm3] 2L_2304592_SNP [dm6]	T	G	2.803e^-4	0.851	INTERGENIC
3L	3580697	3L_3580697_SNP [dm3] 3L_3580697_SNP [dm6]	C	T	2.805e^-4	0.851	INTRON Eip63E
2L	14700420	2L_14700420_SNP [dm3] 2L_14700420_SNP [dm6]	T	C	2.807e^-4	0.851	INTERGENIC
3R	26494968	3R_26494968_SNP [dm3] 3R_30669246_SNP [dm6]	G	A	2.811e^-4	0.851	INTERGENIC
2L	6713468	2L_6713468_SNP [dm3] 2L_6713468_SNP [dm6]	G	A	2.811e^-4	0.851	SPLICE_SITE_REGION AkhR INTRON AkhR	TF binding site mE1_TFBS_chinmo
2R	17882103	2R_17882103_SNP [dm3] 2R_21994598_SNP [dm6]	T	G	2.813e^-4	0.851	INTRON CG34370
3L	17227297	3L_17227297_SNP [dm3] 3L_17234197_SNP [dm6]	G	C	2.824e^-4	0.851	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
2R	8756684	2R_8756684_SNP [dm3] 2R_12869179_SNP [dm6]	T	C	2.826e^-4	0.851	UTR_5_PRIME CG17574 INTRON CR45140	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	11795059	2L_11795059_DEL [dm3] 2L_11795059_DEL [dm6]	TCA	T	2.838e^-4	0.851	UTR_3_PRIME crol UPSTREAM CG14937 DOWNSTREAM crol	TF binding site BDTNP1_TFBS_dl
3L	9200994	3L_9200994_SNP [dm3] 3L_9207894_SNP [dm6]	C	T	2.841e^-4	0.851	INTRON Slc45-1
3L	11035935	3L_11035935_SNP [dm3] 3L_11042835_SNP [dm6]	G	T	2.842e^-4	0.851	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
X	7228214	X_7228214_SNP [dm3] X_7334181_SNP [dm6]	C	G	2.843e^-4	0.851	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	14597365	3R_14597365_SNP [dm3] 3R_18771643_SNP [dm6]	C	T	2.844e^-4	0.851	INTRON CG7720
3L	16708129	3L_16708129_SNP [dm3] 3L_16715029_SNP [dm6]	A	T	2.850e^-4	0.851	INTRON Dab
2R	18984243	2R_18984243_SNP [dm3] 2R_23096720_SNP [dm6]	G	A	2.850e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	11176233	2R_11176233_SNP [dm3] 2R_15288728_SNP [dm6]	C	A	2.851e^-4	0.851	INTRON Trpm
2R	11177178	2R_11177178_SNP [dm3] 2R_15289673_SNP [dm6]	C	A	2.851e^-4	0.851	INTRON Trpm
2R	11177188	2R_11177188_SNP [dm3] 2R_15289683_SNP [dm6]	G	A	2.851e^-4	0.851	INTRON Trpm
3L	11789729	3L_11789729_INS [dm3] 3L_11796629_INS [dm6]	T	TTGGTT	2.865e^-4	0.851	INTRON Klp68D	TF binding site mE1_TFBS_sens
2R	1627140	2R_1627140_SNP [dm3] 2R_5739635_SNP [dm6]	T	G	2.866e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2L	7315730	2L_7315730_SNP [dm3] 2L_7315730_SNP [dm6]	G	C	2.871e^-4	0.851	UTR_3_PRIME wg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2R	18746911	2R_18746911_SNP [dm3] 2R_22859388_SNP [dm6]	G	A	2.873e^-4	0.851	UPSTREAM inaD INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	10683220	3R_10683220_SNP [dm3] 3R_14857498_SNP [dm6]	A	G	2.886e^-4	0.851	INTRON btsz
2R	18553703	2R_18553703_SNP [dm3] 2R_22666198_SNP [dm6]	G	A	2.891e^-4	0.851	UPSTREAM CR42868 & 1 other DOWNSTREAM CG42867 EXON CR45269
X	18883438	X_18883438_SNP [dm3] X_18989405_SNP [dm6]	A	C	2.892e^-4	0.851	INTRON CG43759
3R	1504216	3R_1504216_SNP [dm3] 3R_5678494_SNP [dm6]	C	T	2.894e^-4	0.851	NON_SYNONYMOUS_CODING Atg17	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17864358	2R_17864358_SNP [dm3] 2R_21976853_SNP [dm6]	T	C	2.906e^-4	0.851	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304	TF binding site mE1_TFBS_sens
3L	13166887	3L_13166887_SNP [dm3] 3L_13173787_SNP [dm6]	T	A	2.909e^-4	0.851	UPSTREAM snky INTERGENIC
3L	18809830	3L_18809830_SNP [dm3] 3L_18816730_SNP [dm6]	G	A	2.928e^-4	0.851	INTRON CG14073
3R	1425926	3R_1425926_SNP [dm3] 3R_5600204_SNP [dm6]	C	T	2.929e^-4	0.851	UTR_5_PRIME kra UPSTREAM kra INTRON kra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	26293810	3R_26293810_SNP [dm3] 3R_30468088_SNP [dm6]	G	T	2.934e^-4	0.851	INTRON PH4alphaEFB	TF binding site mE1_TFBS_cad
3L	17227207	3L_17227207_DEL [dm3] 3L_17234107_DEL [dm6]	AA	A	2.958e^-4	0.851	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
3L	8232182	3L_8232182_SNP [dm3] 3L_8239082_SNP [dm6]	G	A	2.960e^-4	0.851	INTRON CG7213 & 1 other
3L	7126052	3L_7126052_SNP [dm3] 3L_7132952_SNP [dm6]	A	T	2.972e^-4	0.851	INTRON Dbi	TF binding site BDTNP1_TFBS_sna
X	8897208	X_8897208_SNP [dm3] X_9003175_SNP [dm6]	T	C	2.973e^-4	0.851	INTRON rdgA & 1 other
2L	18617018	2L_18617018_SNP [dm3] 2L_18617018_SNP [dm6]	A	T	3.000e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2574245	X_2574245_SNP [dm3] X_2680212_SNP [dm6]	A	G	3.002e^-4	0.851	UTR_3_PRIME HLH3B DOWNSTREAM sgg
3L	1364722	3L_1364722_SNP [dm3] 3L_1364722_SNP [dm6]	C	T	3.003e^-4	0.851	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
3L	17255520	3L_17255520_SNP [dm3] 3L_17262420_SNP [dm6]	G	T	3.012e^-4	0.851	INTRON CR43870
3R	23908238	3R_23908238_SNP [dm3] 3R_28082516_SNP [dm6]	A	T	3.023e^-4	0.851	INTRON CG34362
2R	18985519	2R_18985519_SNP [dm3] 2R_23097996_SNP [dm6]	T	C	3.033e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_hb
X	4287253	X_4287253_SNP [dm3] X_4393220_SNP [dm6]	A	G	3.033e^-4	0.851	INTRON CR32773
2L	7454994	2L_7454994_SNP [dm3] 2L_7454994_SNP [dm6]	C	A	3.033e^-4	0.851	UTR_3_PRIME Gr28b UPSTREAM Gr28a
X	3727944	X_3727944_SNP [dm3] X_3833911_SNP [dm6]	T	G	3.034e^-4	0.851	INTRON ec
3L	12678380	3L_12678380_SNP [dm3] 3L_12685280_SNP [dm6]	T	A	3.036e^-4	0.851	INTERGENIC
2L	21118383	2L_21118383_SNP [dm3] 2L_21118383_SNP [dm6]	T	G	3.037e^-4	0.851	INTRON Nhe2
3L	7374866	3L_7374866_SNP [dm3] 3L_7381766_SNP [dm6]	T	A	3.038e^-4	0.851	UPSTREAM smid & 1 other INTRON smid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19001023	2R_19001023_SNP [dm3] 2R_23113500_SNP [dm6]	A	T	3.039e^-4	0.851	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23657442	3R_23657442_SNP [dm3] 3R_27831720_SNP [dm6]	G	C	3.039e^-4	0.851	INTRON CG34353
3R	6175957	3R_6175957_SNP [dm3] 3R_10350235_SNP [dm6]	A	G	3.042e^-4	0.851	UTR_5_PRIME jumu DOWNSTREAM CG31406	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	16736775	3L_16736775_SNP [dm3] 3L_16743675_SNP [dm6]	T	C	3.046e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2L	18617011	2L_18617011_INS [dm3] 2L_18617011_INS [dm6]	T	TC	3.051e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13639318	3L_13639318_SNP [dm3] 3L_13646218_SNP [dm6]	C	G	3.055e^-4	0.851	INTRON bru-3	TF binding site mE1_TFBS_HSA
2R	21002996	2R_21002996_SNP [dm3] 2R_25115473_SNP [dm6]	G	T	3.055e^-4	0.851	INTRON lov	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	17124388	2L_17124388_SNP [dm3] 2L_17124388_SNP [dm6]	T	A	3.060e^-4	0.851	NON_SYNONYMOUS_CODING CG31784
2L	8495864	2L_8495864_SNP [dm3] 2L_8495864_SNP [dm6]	T	G	3.071e^-4	0.851	SYNONYMOUS_CODING Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9264271	2R_9264271_SNP [dm3] 2R_13376766_SNP [dm6]	T	C	3.077e^-4	0.851	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	18639317	2R_18639317_SNP [dm3] 2R_22751812_SNP [dm6]	A	G	3.078e^-4	0.851	INTRON CG42260
3L	15437805	3L_15437805_DEL [dm3] 3L_15444705_DEL [dm6]	AACAAAGGGATCAAAGCGGG...	A	3.085e^-4	0.851	INTERGENIC
2L	7906433	2L_7906433_SNP [dm3] 2L_7906433_SNP [dm6]	C	G	3.089e^-4	0.851	INTRON Snoo
3L	13629810	3L_13629810_SNP [dm3] 3L_13636710_SNP [dm6]	T	A	3.091e^-4	0.851	INTRON bru-3
2L	11380058	2L_11380058_SNP [dm3] 2L_11380058_SNP [dm6]	T	A	3.096e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs
3L	17227174	3L_17227174_SNP [dm3] 3L_17234074_SNP [dm6]	A	C	3.098e^-4	0.851	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
2L	11799792	2L_11799792_SNP [dm3] 2L_11799792_SNP [dm6]	A	T	3.101e^-4	0.851	INTRON crol
3L	3136985	3L_3136985_SNP [dm3] 3L_3136985_SNP [dm6]	G	C	3.101e^-4	0.851	INTRON CG11537
3L	17223222	3L_17223222_SNP [dm3] 3L_17230122_SNP [dm6]	G	A	3.108e^-4	0.851	INTRON Rbp6
X	4795250	X_4795250_SNP [dm3] X_4901217_SNP [dm6]	T	C	3.111e^-4	0.851	INTRON CG42594
3L	3297482	3L_3297482_SNP [dm3] 3L_3297482_SNP [dm6]	C	T	3.118e^-4	0.851	SYNONYMOUS_CODING CG12009
3R	5090236	3R_5090236_SNP [dm3] 3R_9264514_SNP [dm6]	A	G	3.127e^-4	0.851	UPSTREAM sage DOWNSTREAM Aats-trp INTERGENIC
2R	11509682	2R_11509682_SNP [dm3] 2R_15622177_SNP [dm6]	G	A	3.135e^-4	0.851	INTRON CG42524	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6264301	3L_6264301_SNP [dm3] 3L_6271201_SNP [dm6]	T	G	3.144e^-4	0.851	INTERGENIC
3L	6264330	3L_6264330_INS [dm3] 3L_6271230_INS [dm6]	T	TTT	3.144e^-4	0.851	INTERGENIC
3L	6264332	3L_6264332_SNP [dm3] 3L_6271232_SNP [dm6]	C	T	3.144e^-4	0.851	INTERGENIC
3L	6264346	3L_6264346_SNP [dm3] 3L_6271246_SNP [dm6]	T	G	3.144e^-4	0.851	INTERGENIC
3L	6264378	3L_6264378_SNP [dm3] 3L_6271278_SNP [dm6]	A	T	3.144e^-4	0.851	INTERGENIC
3L	6264519	3L_6264519_SNP [dm3] 3L_6271419_SNP [dm6]	T	C	3.144e^-4	0.851	INTERGENIC
2R	3907287	2R_3907287_SNP [dm3] 2R_8019782_SNP [dm6]	G	A	3.150e^-4	0.851	EXON CR45267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2L	11380230	2L_11380230_SNP [dm3] 2L_11380230_SNP [dm6]	C	A	3.158e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs
2L	11912803	2L_11912803_DEL [dm3] 2L_11912803_DEL [dm6]	CATA	C	3.162e^-4	0.851	INTRON Pde1c
3L	17227199	3L_17227199_SNP [dm3] 3L_17234099_SNP [dm6]	C	A	3.163e^-4	0.851	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
2R	8756702	2R_8756702_SNP [dm3] 2R_12869197_SNP [dm6]	T	G	3.170e^-4	0.851	UTR_5_PRIME CG17574 INTRON CR45140	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	3128946	2L_3128946_SNP [dm3] 2L_3128946_SNP [dm6]	A	G	3.171e^-4	0.851	NON_SYNONYMOUS_CODING CG15403 INTRON toc
2R	8512475	2R_8512475_SNP [dm3] 2R_12624970_SNP [dm6]	T	C	3.171e^-4	0.851	UPSTREAM CG17760 INTRON CG30054
2L	10181646	2L_10181646_SNP [dm3] 2L_10181646_SNP [dm6]	G	T	3.172e^-4	0.851	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
3L	715004	3L_715004_SNP [dm3] 3L_715004_SNP [dm6]	C	A	3.172e^-4	0.851	UPSTREAM CR45411 INTERGENIC
2R	19629143	2R_19629143_SNP [dm3] 2R_23741620_SNP [dm6]	G	A	3.179e^-4	0.851	INTRON egl
2R	19505830	2R_19505830_SNP [dm3] 2R_23618307_SNP [dm6]	G	T	3.188e^-4	0.851	INTERGENIC
3R	7589981	3R_7589981_SNP [dm3] 3R_11764259_SNP [dm6]	A	G	3.203e^-4	0.851	UTR_5_PRIME Lk6 DOWNSTREAM l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11456893	2L_11456893_SNP [dm3] 2L_11456893_SNP [dm6]	A	G	3.209e^-4	0.851	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	14146136	3L_14146136_INS [dm3] 3L_14153036_INS [dm6]	A	AA	3.224e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	2374206	3L_2374206_SNP [dm3] 3L_2374206_SNP [dm6]	T	C	3.228e^-4	0.851	SYNONYMOUS_CODING CG9004 UPSTREAM mRpL23	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	6806326	3L_6806326_SNP [dm3] 3L_6813226_SNP [dm6]	T	C	3.235e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med
3L	6802455	3L_6802455_INS [dm3] 3L_6809355_INS [dm6]	T	TT	3.241e^-4	0.851	INTERGENIC
2L	11596053	2L_11596053_SNP [dm3] 2L_11596053_SNP [dm6]	G	A	3.241e^-4	0.851	INTRON kek2
2R	19001024	2R_19001024_SNP [dm3] 2R_23113501_SNP [dm6]	T	A	3.263e^-4	0.851	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17255508	3L_17255508_DEL [dm3] 3L_17262408_DEL [dm6]	CTAGAT	C	3.276e^-4	0.851	INTRON CR43870
3R	1713121	3R_1713121_SNP [dm3] 3R_5887399_SNP [dm6]	A	G	3.278e^-4	0.851	INTRON CG34113
2L	19615039	2L_19615039_SNP [dm3] 2L_19615039_SNP [dm6]	T	C	3.280e^-4	0.851	INTRON Lar
X	19440284	X_19440284_SNP [dm3] X_19546251_SNP [dm6]	C	G	3.284e^-4	0.851	INTRON CG32532	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	11983028	3R_11983028_DEL [dm3] 3R_16157306_DEL [dm6]	CATTC	G	3.300e^-4	0.851	UPSTREAM CG6006 INTRON CG6006
3L	13623649	3L_13623649_SNP [dm3] 3L_13630549_SNP [dm6]	C	A	3.307e^-4	0.851	INTRON bru-3
3R	1482086	3R_1482086_SNP [dm3] 3R_5656364_SNP [dm6]	C	T	3.307e^-4	0.851	NON_SYNONYMOUS_CODING CG2182 DOWNSTREAM MED27
2L	1185812	2L_1185812_SNP [dm3] 2L_1185812_SNP [dm6]	A	G	3.309e^-4	0.851	UTR_5_PRIME CG5001 UPSTREAM CG5001 DOWNSTREAM Tgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14411507	3L_14411507_SNP [dm3] 3L_14418407_SNP [dm6]	A	G	3.323e^-4	0.851	INTRON bbg
3L	19249577	3L_19249577_SNP [dm3] 3L_19256477_SNP [dm6]	G	A	3.331e^-4	0.851	SYNONYMOUS_CODING rept DOWNSTREAM nes	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	18861844	2L_18861844_SNP [dm3] 2L_18861844_SNP [dm6]	A	G	3.336e^-4	0.851	SYNONYMOUS_CODING tup	TF binding site BDTNP1_TFBS_da
2L	2284579	2L_2284579_SNP [dm3] 2L_2284579_SNP [dm6]	A	T	3.352e^-4	0.851	UPSTREAM CG4271 INTRON CR43754 EXON CR43754	TF binding site mE1_TFBS_inv
2L	13892851	2L_13892851_DEL [dm3] 2L_13892851_DEL [dm6]	AA	A	3.358e^-4	0.851	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
X	15279677	X_15279677_SNP [dm3] X_15385644_SNP [dm6]	T	C	3.361e^-4	0.851	UPSTREAM CG9164 DOWNSTREAM Cngl INTERGENIC
3L	6276547	3L_6276547_DEL [dm3] 3L_6283447_DEL [dm6]	AAA	TG	3.376e^-4	0.851	INTERGENIC
3R	19152729	3R_19152729_SNP [dm3] 3R_23327007_SNP [dm6]	G	C	3.380e^-4	0.851	INTRON pnt
2L	19835962	2L_19835962_SNP [dm3] 2L_19835962_SNP [dm6]	G	C	3.380e^-4	0.851	INTRON sick
3R	16983728	3R_16983728_SNP [dm3] 3R_21158006_SNP [dm6]	A	C	3.386e^-4	0.851	INTRON SNF4Agamma
2L	6816696	2L_6816696_SNP [dm3] 2L_6816696_SNP [dm6]	A	G	3.398e^-4	0.851	INTERGENIC
2R	19430257	2R_19430257_SNP [dm3] 2R_23542734_SNP [dm6]	T	G	3.403e^-4	0.851	NON_SYNONYMOUS_CODING Gr59f UPSTREAM Gr59e	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	1093264	3L_1093264_SNP [dm3] 3L_1093264_SNP [dm6]	C	T	3.405e^-4	0.851	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	17258253	2R_17258253_SNP [dm3] 2R_21370748_SNP [dm6]	G	A	3.407e^-4	0.851	INTRON cv-2	TF binding site mE1_TFBS_cad
2L	14845186	2L_14845186_SNP [dm3] 2L_14845186_SNP [dm6]	G	A	3.410e^-4	0.851	SYNONYMOUS_CODING CG15279
3R	1327209	3R_1327209_SNP [dm3] 3R_5501487_SNP [dm6]	G	A	3.411e^-4	0.851	INTRON CG31547
2R	14269557	2R_14269557_SNP [dm3] 2R_18382052_SNP [dm6]	A	T	3.412e^-4	0.851	UPSTREAM CG43202 DOWNSTREAM IM23 INTERGENIC
X	3273509	X_3273509_SNP [dm3] X_3379476_SNP [dm6]	T	C	3.414e^-4	0.851	INTRON dm & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6264367	3L_6264367_SNP [dm3] 3L_6271267_SNP [dm6]	T	C	3.414e^-4	0.851	INTERGENIC
2R	5383777	2R_5383777_SNP [dm3] 2R_9496272_SNP [dm6]	C	T	3.430e^-4	0.851	INTRON Wnt2
2L	18617071	2L_18617071_DEL [dm3] 2L_18617071_DEL [dm6]	TG	T	3.433e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18617075	2L_18617075_DEL [dm3] 2L_18617075_DEL [dm6]	GTCAGTACCC	G	3.433e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19200175	2R_19200175_SNP [dm3] 2R_23312652_SNP [dm6]	G	A	3.439e^-4	0.851	DOWNSTREAM HP1Lcsd INTERGENIC	TF binding site mE1_TFBS_cad
2L	16228564	2L_16228564_SNP [dm3] 2L_16228564_SNP [dm6]	T	A	3.440e^-4	0.851	INTERGENIC
2R	17527555	2R_17527555_SNP [dm3] 2R_21640050_SNP [dm6]	A	G	3.440e^-4	0.851	INTERGENIC
3R	10499505	3R_10499505_SNP [dm3] 3R_14673783_SNP [dm6]	T	A	3.450e^-4	0.851	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
3L	9671152	3L_9671152_SNP [dm3] 3L_9678052_SNP [dm6]	C	A	3.451e^-4	0.851	INTRON fry	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16739527	2R_16739527_SNP [dm3] 2R_20852022_SNP [dm6]	A	G	3.453e^-4	0.851	SYNONYMOUS_CODING CG9993
3L	3887093	3L_3887093_SNP [dm3] 3L_3887093_SNP [dm6]	C	T	3.456e^-4	0.851	INTERGENIC
3L	16707698	3L_16707698_SNP [dm3] 3L_16714598_SNP [dm6]	G	C	3.459e^-4	0.851	INTRON Dab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	16737240	2L_16737240_SNP [dm3] 2L_16737240_SNP [dm6]	A	G	3.459e^-4	0.851	SYNONYMOUS_CODING glu
3R	7181700	3R_7181700_SNP [dm3] 3R_11355978_SNP [dm6]	G	A	3.471e^-4	0.851	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5248898	X_5248898_SNP [dm3] X_5354865_SNP [dm6]	A	T	3.471e^-4	0.851	INTRON SK
3R	21166905	3R_21166905_SNP [dm3] 3R_25341183_SNP [dm6]	G	A	3.477e^-4	0.851	INTRON rha	TF binding site mE1_TFBS_cad
2L	16384316	2L_16384316_SNP [dm3] 2L_16384316_SNP [dm6]	G	A	3.479e^-4	0.851	INTERGENIC
X	6507520	X_6507520_DEL [dm3] X_6613487_DEL [dm6]	GTTTTAAAAG	G	3.481e^-4	0.851	INTRON pigs	TF binding site mE1_TFBS_HSA
2L	18682399	2L_18682399_SNP [dm3] 2L_18682399_SNP [dm6]	G	A	3.490e^-4	0.851	UPSTREAM tos INTRON CG31751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1475098	3R_1475098_SNP [dm3] 3R_5649376_SNP [dm6]	C	G	3.496e^-4	0.851	START_GAINED Sec23 UTR_5_PRIME Sec23 UPSTREAM MTA1-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	924347	2L_924347_DEL [dm3] 2L_924347_DEL [dm6]	TC	T	3.502e^-4	0.851	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	16556543	3L_16556543_INS [dm3] 3L_16563443_INS [dm6]	A	AA	3.507e^-4	0.851	DOWNSTREAM Mipp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	22859937	3R_22859937_SNP [dm3] 3R_27034215_SNP [dm6]	T	C	3.517e^-4	0.851	INTRON RYa-R	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	1486255	3R_1486255_SNP [dm3] 3R_5660533_SNP [dm6]	T	A	3.525e^-4	0.851	UPSTREAM CG1109 & 1 other EXON CR44093	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
2L	14360153	2L_14360153_SNP [dm3] 2L_14360153_SNP [dm6]	C	G	3.529e^-4	0.851	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21118446	2L_21118446_SNP [dm3] 2L_21118446_SNP [dm6]	C	T	3.529e^-4	0.851	INTRON Nhe2
X	15957319	X_15957319_SNP [dm3] X_16063286_SNP [dm6]	G	A	3.535e^-4	0.851	UPSTREAM dpr18 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk
3L	3853253	3L_3853253_DEL [dm3] 3L_3853253_DEL [dm6]	ACATA	A	3.536e^-4	0.851	INTRON Awh
3R	25018979	3R_25018979_SNP [dm3] 3R_29193257_SNP [dm6]	C	T	3.540e^-4	0.851	INTRON CG14509
3R	1527418	3R_1527418_DEL [dm3] 3R_5701696_DEL [dm6]	TT	T	3.543e^-4	0.851	UPSTREAM plx INTRON plx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15768471	3L_15768471_DEL [dm3] 3L_15775371_DEL [dm6]	GG	G	3.544e^-4	0.851	INTERGENIC
X	7140089	X_7140089_SNP [dm3] X_7246056_SNP [dm6]	A	G	3.552e^-4	0.851	INTRON CR44357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3302134	2L_3302134_SNP [dm3] 2L_3302134_SNP [dm6]	G	A	3.557e^-4	0.851	INTRON CG9663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18617003	2L_18617003_SNP [dm3] 2L_18617003_SNP [dm6]	G	A	3.563e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6372513	3L_6372513_SNP [dm3] 3L_6379413_SNP [dm6]	A	G	3.577e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11630921	3L_11630921_SNP [dm3] 3L_11637821_SNP [dm6]	C	T	3.577e^-4	0.851	INTRON CG32091
2R	21011917	2R_21011917_SNP [dm3] 2R_25124394_SNP [dm6]	C	A	3.581e^-4	0.851	INTRON lov
2R	12163236	2R_12163236_SNP [dm3] 2R_16275731_SNP [dm6]	A	G	3.582e^-4	0.851	SYNONYMOUS_CODING CG33017
3R	23657547	3R_23657547_SNP [dm3] 3R_27831825_SNP [dm6]	G	A	3.585e^-4	0.851	INTRON CG34353
2R	14190161	2R_14190161_SNP [dm3] 2R_18302656_SNP [dm6]	G	A	3.592e^-4	0.851	DOWNSTREAM CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	5917964	2L_5917964_SNP [dm3] 2L_5917964_SNP [dm6]	T	C	3.592e^-4	0.851	SYNONYMOUS_CODING bchs
3R	2588178	3R_2588178_SNP [dm3] 3R_6762456_SNP [dm6]	A	G	3.600e^-4	0.851	UPSTREAM Ama INTRON CR45593 EXON CR45593	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3024182	3L_3024182_SNP [dm3] 3L_3024182_SNP [dm6]	T	A	3.605e^-4	0.851	UTR_3_PRIME aly DOWNSTREAM aly
X	4871594	X_4871594_SNP [dm3] X_4977561_SNP [dm6]	T	A	3.608e^-4	0.851	INTRON CR44833
2R	8329949	2R_8329949_SNP [dm3] 2R_12442444_SNP [dm6]	T	C	3.609e^-4	0.851	INTRON Dyb
2L	14459269	2L_14459269_SNP [dm3] 2L_14459269_SNP [dm6]	A	T	3.610e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	22234476	X_22234476_SNP [dm3] X_22832640_SNP [dm6]	G	A	3.613e^-4	0.851	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12047711	3R_12047711_SNP [dm3] 3R_16221989_SNP [dm6]	T	A	3.615e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20005997	3L_20005997_SNP [dm3] 3L_20012897_SNP [dm6]	A	G	3.615e^-4	0.851	SYNONYMOUS_CODING kug
2L	2835504	2L_2835504_SNP [dm3] 2L_2835504_SNP [dm6]	T	G	3.618e^-4	0.851	SYNONYMOUS_CODING CG3119 DOWNSTREAM CG3119
2L	19615078	2L_19615078_SNP [dm3] 2L_19615078_SNP [dm6]	C	A	3.620e^-4	0.851	INTRON Lar
2R	6871224	2R_6871224_SNP [dm3] 2R_10983719_SNP [dm6]	A	T	3.624e^-4	0.851	INTRON luna
3R	13457304	3R_13457304_SNP [dm3] 3R_17631582_SNP [dm6]	C	A	3.628e^-4	0.851	UPSTREAM tRNA:CR31573 & 1 other INTRON CG43175	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	23916544	3R_23916544_SNP [dm3] 3R_28090822_SNP [dm6]	G	A	3.631e^-4	0.851	DOWNSTREAM CG34362 INTERGENIC
X	16212614	X_16212614_SNP [dm3] X_16318581_SNP [dm6]	G	A	3.636e^-4	0.851	SYNONYMOUS_CODING Cyp1 DOWNSTREAM CG13957	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	10181779	2L_10181779_INS [dm3] 2L_10181779_INS [dm6]	T	TTTCAGTGAATGT...	3.637e^-4	0.851	DOWNSTREAM Sur INTERGENIC
3L	839574	3L_839574_DEL [dm3] 3L_839574_DEL [dm6]	AGATACAACTA...	A	3.639e^-4	0.851	UTR_3_PRIME CG13887 DOWNSTREAM CG13902
3R	15460681	3R_15460681_SNP [dm3] 3R_19634959_SNP [dm6]	C	G	3.641e^-4	0.851	UTR_5_PRIME CG34138 INTRON subdued
3R	25702392	3R_25702392_SNP [dm3] 3R_29876670_SNP [dm6]	G	T	3.644e^-4	0.851	UPSTREAM CG31038 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	18809463	3L_18809463_SNP [dm3] 3L_18816363_SNP [dm6]	C	T	3.651e^-4	0.851	INTRON CG14073
3L	7056872	3L_7056872_SNP [dm3] 3L_7063772_SNP [dm6]	T	C	3.658e^-4	0.851	INTRON CG8641
2L	8178714	2L_8178714_SNP [dm3] 2L_8178714_SNP [dm6]	C	T	3.659e^-4	0.851	NON_SYNONYMOUS_CODING Piezo
2R	17415241	2R_17415241_SNP [dm3] 2R_21527736_SNP [dm6]	A	G	3.672e^-4	0.851	INTRON Egfr
2R	12496788	2R_12496788_SNP [dm3] 2R_16609283_SNP [dm6]	G	A	3.674e^-4	0.851	UTR_5_PRIME CG5065 INTRON CG5065	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	12016781	2R_12016781_SNP [dm3] 2R_16129276_SNP [dm6]	G	A	3.681e^-4	0.851	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	18455533	X_18455533_SNP [dm3] X_18561500_SNP [dm6]	A	C	3.683e^-4	0.851	INTRON Bx
2L	18617027	2L_18617027_SNP [dm3] 2L_18617027_SNP [dm6]	A	G	3.684e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9141115	2L_9141115_SNP [dm3] 2L_9141115_SNP [dm6]	A	T	3.694e^-4	0.851	INTRON CG32982
2L	13458317	2L_13458317_SNP [dm3] 2L_13458317_SNP [dm6]	C	A	3.695e^-4	0.851	DOWNSTREAM CG42809 INTRON CG42784 EXON CR45684
3R	10371388	3R_10371388_SNP [dm3] 3R_14545666_SNP [dm6]	A	T	3.698e^-4	0.851	INTRON Pde6
3R	5169226	3R_5169226_SNP [dm3] 3R_9343504_SNP [dm6]	T	C	3.704e^-4	0.851	INTRON CG45050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6300596	3L_6300596_SNP [dm3] 3L_6307496_SNP [dm6]	C	A	3.706e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	18395601	X_18395601_DEL [dm3] X_18501568_DEL [dm6]	TT	T	3.718e^-4	0.851	UTR_3_PRIME Wnt5 DOWNSTREAM Rad51D
2R	17258050	2R_17258050_SNP [dm3] 2R_21370545_SNP [dm6]	G	T	3.729e^-4	0.851	INTRON cv-2	TF binding site mE1_TFBS_cad
3L	19271713	3L_19271713_INS [dm3] 3L_19278613_INS [dm6]	A	ATTA	3.731e^-4	0.851	INTRON CG14086
2R	9539728	2R_9539728_DEL [dm3] 2R_13652223_DEL [dm6]	TT	T	3.736e^-4	0.851	INTRON fas	TF binding site BDTNP1_TFBS_twi
2L	8494473	2L_8494473_SNP [dm3] 2L_8494473_SNP [dm6]	A	G	3.738e^-4	0.851	DOWNSTREAM Bace INTRON Dh31
2R	12699650	2R_12699650_SNP [dm3] 2R_16812145_SNP [dm6]	G	T	3.739e^-4	0.851	UPSTREAM CR44379 INTERGENIC
3L	15669947	3L_15669947_SNP [dm3] 3L_15676847_SNP [dm6]	A	C	3.740e^-4	0.851	INTERGENIC
2R	16565260	2R_16565260_SNP [dm3] 2R_20677755_SNP [dm6]	G	T	3.761e^-4	0.851	INTERGENIC
2L	3019361	2L_3019361_SNP [dm3] 2L_3019361_SNP [dm6]	T	A	3.766e^-4	0.851	NON_SYNONYMOUS_CODING CG17264	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	18746651	2R_18746651_SNP [dm3] 2R_22859128_SNP [dm6]	A	T	3.766e^-4	0.851	UPSTREAM inaD INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14844950	2L_14844950_SNP [dm3] 2L_14844950_SNP [dm6]	C	A	3.768e^-4	0.851	DOWNSTREAM CG15279 INTERGENIC
2R	8435080	2R_8435080_DEL [dm3] 2R_12547575_DEL [dm6]	AA	A	3.782e^-4	0.851	INTRON fra	TF binding site BDTNP1_TFBS_dl
2L	11141706	2L_11141706_SNP [dm3] 2L_11141706_SNP [dm6]	T	C	3.782e^-4	0.851	SYNONYMOUS_CODING Gyc32E
2L	11436021	2L_11436021_SNP [dm3] 2L_11436021_SNP [dm6]	A	C	3.782e^-4	0.851	INTRON salm	TF binding site BDTNP1_TFBS_twi
2L	19819650	2L_19819650_DEL [dm3] 2L_19819650_DEL [dm6]	GGTAT	G	3.790e^-4	0.851	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	23359931	3R_23359931_SNP [dm3] 3R_27534209_SNP [dm6]	A	C	3.800e^-4	0.851	DOWNSTREAM CG12885 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7292050	2L_7292050_SNP [dm3] 2L_7292050_SNP [dm6]	A	G	3.812e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15669085	X_15669085_SNP [dm3] X_15775052_SNP [dm6]	G	A	3.825e^-4	0.851	NON_SYNONYMOUS_CODING CG43672
2R	18997080	2R_18997080_SNP [dm3] 2R_23109557_SNP [dm6]	G	A	3.836e^-4	0.851	DOWNSTREAM CR44781 INTERGENIC
2L	18610143	2L_18610143_SNP [dm3] 2L_18610143_SNP [dm6]	T	G	3.837e^-4	0.851	SYNONYMOUS_CODING Atac2 DOWNSTREAM CG10333	TF binding site mE1_TFBS_sens
3R	20929944	3R_20929944_SNP [dm3] 3R_25104222_SNP [dm6]	T	C	3.837e^-4	0.851	DOWNSTREAM CG45095 INTRON CG34027
3L	18930346	3L_18930346_SNP [dm3] 3L_18937246_SNP [dm6]	C	T	3.840e^-4	0.851	INTRON CG32204
3L	1311936	3L_1311936_SNP [dm3] 3L_1311936_SNP [dm6]	A	C	3.841e^-4	0.851	SYNONYMOUS_CODING CG9186 DOWNSTREAM CG2469	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	793458	2L_793458_SNP [dm3] 2L_793458_SNP [dm6]	G	A	3.842e^-4	0.851	INTERGENIC
2R	5851601	2R_5851601_SNP [dm3] 2R_9964096_SNP [dm6]	A	T	3.847e^-4	0.851	SYNONYMOUS_CODING CG1418 DOWNSTREAM Pal1	TF binding site mE1_TFBS_HSA
X	712780	X_712780_SNP [dm3] X_818747_SNP [dm6]	G	A	3.850e^-4	0.851	NON_SYNONYMOUS_CODING CG43867	TF binding site mE1_TFBS_HSA
X	8290873	X_8290873_SNP [dm3] X_8396840_SNP [dm6]	A	G	3.855e^-4	0.851	DOWNSTREAM CG15345 INTERGENIC
3L	16731463	3L_16731463_INS [dm3] 3L_16738363_INS [dm6]	T	TC	3.861e^-4	0.851	INTRON CG9701	TF binding site mE1_TFBS_sens
3L	10960256	3L_10960256_INS [dm3] 3L_10967156_INS [dm6]	T	TTTG	3.862e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn mE1_TFBS_cad mE1_TFBS_HSA
2R	17043690	2R_17043690_SNP [dm3] 2R_21156185_SNP [dm6]	C	T	3.866e^-4	0.851	INTRON CG30389
3L	752059	3L_752059_SNP [dm3] 3L_752059_SNP [dm6]	C	T	3.867e^-4	0.851	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	5642362	2L_5642362_SNP [dm3] 2L_5642362_SNP [dm6]	A	C	3.872e^-4	0.851	DOWNSTREAM mir-962 & 2 others INTRON CG31646
X	13829303	X_13829303_SNP [dm3] X_13935270_SNP [dm6]	T	C	3.873e^-4	0.851	INTRON mamo
2L	18070169	2L_18070169_SNP [dm3] 2L_18070169_SNP [dm6]	T	A	3.874e^-4	0.851	UTR_3_PRIME rdo
2R	17858921	2R_17858921_SNP [dm3] 2R_21971416_SNP [dm6]	A	G	3.877e^-4	0.851	UPSTREAM CG34029 DOWNSTREAM ppk9 INTERGENIC
2L	13228449	2L_13228449_SNP [dm3] 2L_13228449_SNP [dm6]	C	T	3.879e^-4	0.851	UTR_3_PRIME CG16813	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	3942607	3L_3942607_SNP [dm3] 3L_3942607_SNP [dm6]	T	G	3.880e^-4	0.851	UPSTREAM CG14982 & 1 other INTERGENIC
3R	25090296	3R_25090296_SNP [dm3] 3R_29264574_SNP [dm6]	T	C	3.883e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8974999	2R_8974999_SNP [dm3] 2R_13087494_SNP [dm6]	T	G	3.888e^-4	0.851	INTERGENIC
2R	12008343	2R_12008343_SNP [dm3] 2R_16120838_SNP [dm6]	C	T	3.894e^-4	0.851	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
2R	16743491	2R_16743491_SNP [dm3] 2R_20855986_SNP [dm6]	A	T	3.902e^-4	0.851	INTERGENIC
3L	12555403	3L_12555403_SNP [dm3] 3L_12562303_SNP [dm6]	T	A	3.907e^-4	0.851	INTRON sowah
2L	19592270	2L_19592270_SNP [dm3] 2L_19592270_SNP [dm6]	T	C	3.915e^-4	0.851	INTRON Lar	TF binding site BDTNP1_TFBS_twi
X	6535088	X_6535088_DEL [dm3] X_6641055_DEL [dm6]	ACAA	A	3.918e^-4	0.851	INTRON pigs
3R	8673346	3R_8673346_INS [dm3] 3R_12847624_INS [dm6]	G	GT	3.928e^-4	0.851	INTRON beat-Va	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	1711450	3R_1711450_SNP [dm3] 3R_5885728_SNP [dm6]	C	T	3.929e^-4	0.851	INTRON CG34113
X	17238112	X_17238112_SNP [dm3] X_17344079_SNP [dm6]	C	A	3.936e^-4	0.851	INTERGENIC
3R	18357577	3R_18357577_SNP [dm3] 3R_22531855_SNP [dm6]	A	G	3.940e^-4	0.851	NON_SYNONYMOUS_CODING CG33093 DOWNSTREAM CG5326
X	17072830	X_17072830_SNP [dm3] X_17178797_SNP [dm6]	G	A	3.943e^-4	0.851	UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15119932	2R_15119932_SNP [dm3] 2R_19232427_SNP [dm6]	G	C	3.951e^-4	0.851	INTRON cora	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5042478	3R_5042478_SNP [dm3] 3R_9216756_SNP [dm6]	T	G	3.955e^-4	0.851	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11176106	2R_11176106_SNP [dm3] 2R_15288601_SNP [dm6]	T	C	3.955e^-4	0.851	INTRON Trpm
2R	11176109	2R_11176109_SNP [dm3] 2R_15288604_SNP [dm6]	A	G	3.955e^-4	0.851	INTRON Trpm
3L	16695274	3L_16695274_SNP [dm3] 3L_16702174_SNP [dm6]	C	T	3.957e^-4	0.851	INTRON Lasp & 1 other
3L	17255675	3L_17255675_INS [dm3] 3L_17262575_INS [dm6]	T	TG	3.963e^-4	0.851	INTRON CR43870
3R	4325677	3R_4325677_DEL [dm3] 3R_8499955_DEL [dm6]	TA	T	3.968e^-4	0.851	INTERGENIC
2R	20220988	2R_20220988_SNP [dm3] 2R_24333465_SNP [dm6]	C	T	3.970e^-4	0.851	SYNONYMOUS_CODING slbo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11793626	3L_11793626_SNP [dm3] 3L_11800526_SNP [dm6]	A	T	3.977e^-4	0.851	DOWNSTREAM tRNA:CR32093 INTRON CG10361
X	15642463	X_15642463_SNP [dm3] X_15748430_SNP [dm6]	G	C	3.978e^-4	0.851	SYNONYMOUS_CODING Tcp-1zeta UPSTREAM CG8239	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6263463	3L_6263463_SNP [dm3] 3L_6270363_SNP [dm6]	C	T	3.981e^-4	0.851	INTERGENIC
3L	16878402	3L_16878402_SNP [dm3] 3L_16885302_SNP [dm6]	A	T	3.984e^-4	0.851	INTRON Lmpt
3R	9614103	3R_9614103_DEL [dm3] 3R_13788381_DEL [dm6]	TACCACCC	T	3.985e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10104304	2R_10104304_SNP [dm3] 2R_14216799_SNP [dm6]	A	T	3.990e^-4	0.851	UPSTREAM mir-308 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	10104372	2R_10104372_SNP [dm3] 2R_14216867_SNP [dm6]	A	G	3.990e^-4	0.851	UPSTREAM RpS23 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	15529828	3R_15529828_SNP [dm3] 3R_19704106_SNP [dm6]	C	T	3.991e^-4	0.851	INTERGENIC
3L	10342822	3L_10342822_SNP [dm3] 3L_10349722_SNP [dm6]	T	A	4.009e^-4	0.851	INTRON CR44327
2R	9980940	2R_9980940_SNP [dm3] 2R_14093435_SNP [dm6]	A	C	4.019e^-4	0.851	INTRON Prosap
3L	13297475	3L_13297475_SNP [dm3] 3L_13304375_SNP [dm6]	T	A	4.021e^-4	0.851	DOWNSTREAM CR44555 INTERGENIC
2L	19615025	2L_19615025_INS [dm3] 2L_19615025_INS [dm6]	G	GACAAAACG	4.026e^-4	0.851	INTRON Lar
X	18372051	X_18372051_SNP [dm3] X_18478018_SNP [dm6]	T	G	4.030e^-4	0.851	INTRON CG32547
2R	19005633	2R_19005633_SNP [dm3] 2R_23118110_SNP [dm6]	G	A	4.033e^-4	0.851	INTERGENIC
3L	12678298	3L_12678298_SNP [dm3] 3L_12685198_SNP [dm6]	G	A	4.036e^-4	0.851	INTERGENIC
3R	25013528	3R_25013528_SNP [dm3] 3R_29187806_SNP [dm6]	C	T	4.046e^-4	0.851	INTRON CG14509
3L	8564193	3L_8564193_SNP [dm3] 3L_8571093_SNP [dm6]	A	T	4.047e^-4	0.851	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_chinmo
3L	14381587	3L_14381587_SNP [dm3] 3L_14388487_SNP [dm6]	A	T	4.055e^-4	0.851	INTERGENIC
3L	14922198	3L_14922198_SNP [dm3] 3L_14929098_SNP [dm6]	G	A	4.057e^-4	0.851	INTRON DCX-EMAP
2L	18617007	2L_18617007_SNP [dm3] 2L_18617007_SNP [dm6]	T	A	4.057e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15277340	X_15277340_SNP [dm3] X_15383307_SNP [dm6]	C	T	4.062e^-4	0.851	UTR_5_PRIME CG9164 INTRON CG9164
2R	17868417	2R_17868417_SNP [dm3] 2R_21980912_SNP [dm6]	A	T	4.064e^-4	0.851	INTRON Gr58a
2R	17868422	2R_17868422_SNP [dm3] 2R_21980917_SNP [dm6]	T	A	4.064e^-4	0.851	INTRON Gr58a
2L	7595392	2L_7595392_SNP [dm3] 2L_7595392_SNP [dm6]	T	A	4.068e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	7271508	3R_7271508_SNP [dm3] 3R_11445786_SNP [dm6]	T	C	4.068e^-4	0.851	INTRON CG17230 & 1 other
2L	18654375	2L_18654375_SNP [dm3] 2L_18654375_SNP [dm6]	C	T	4.078e^-4	0.851	INTRON MESR3
3R	10727466	3R_10727466_SNP [dm3] 3R_14901744_SNP [dm6]	C	T	4.089e^-4	0.851	UPSTREAM RpS5b DOWNSTREAM VhaPPA1-1 INTERGENIC
2R	17328660	2R_17328660_SNP [dm3] 2R_21441155_SNP [dm6]	G	A	4.090e^-4	0.851	INTRON Sdc
X	19518335	X_19518335_SNP [dm3] X_19624302_SNP [dm6]	A	G	4.096e^-4	0.851	SYNONYMOUS_CODING MKP-4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16707307	2L_16707307_SNP [dm3] 2L_16707307_SNP [dm6]	G	C	4.099e^-4	0.851	INTRON CG31808
3L	9978708	3L_9978708_SNP [dm3] 3L_9985608_SNP [dm6]	G	T	4.103e^-4	0.851	INTRON dpr6
2L	13445851	2L_13445851_SNP [dm3] 2L_13445851_SNP [dm6]	C	T	4.105e^-4	0.851	UPSTREAM CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	17615720	X_17615720_SNP [dm3] X_17721687_SNP [dm6]	C	T	4.110e^-4	0.851	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
X	14421369	X_14421369_SNP [dm3] X_14527336_SNP [dm6]	G	A	4.118e^-4	0.851	INTERGENIC
3L	9104291	3L_9104291_SNP [dm3] 3L_9111191_SNP [dm6]	T	A	4.120e^-4	0.851	INTRON bol
2L	3664437	2L_3664437_SNP [dm3] 2L_3664437_SNP [dm6]	G	A	4.122e^-4	0.851	INTRON CG34340
3R	21166845	3R_21166845_SNP [dm3] 3R_25341123_SNP [dm6]	G	T	4.126e^-4	0.851	SYNONYMOUS_CODING rha	TF binding site mE1_TFBS_cad
X	3726504	X_3726504_SNP [dm3] X_3832471_SNP [dm6]	T	G	4.127e^-4	0.851	DOWNSTREAM CG2901 INTRON ec	TF binding site BDTNP1_TFBS_twi
2R	18986566	2R_18986566_SNP [dm3] 2R_23099043_SNP [dm6]	C	T	4.128e^-4	0.851	INTERGENIC
2R	17366653	2R_17366653_SNP [dm3] 2R_21479148_SNP [dm6]	T	C	4.129e^-4	0.851	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	17094584	2R_17094584_SNP [dm3] 2R_21207079_SNP [dm6]	A	G	4.130e^-4	0.851	NON_SYNONYMOUS_CODING Glycogenin INTRON CG44245 & 1 other
2R	6689527	2R_6689527_SNP [dm3] 2R_10802022_SNP [dm6]	T	C	4.133e^-4	0.851	INTRON wde	transposable element FlyBase
X	13394919	X_13394919_SNP [dm3] X_13500886_SNP [dm6]	A	G	4.134e^-4	0.851	INTRON Neto
2R	13697357	2R_13697357_SNP [dm3] 2R_17809852_SNP [dm6]	T	G	4.136e^-4	0.851	INTRON grh	TF binding site BDTNP1_TFBS_da
3L	17774833	3L_17774833_SNP [dm3] 3L_17781733_SNP [dm6]	C	A	4.142e^-4	0.851	INTERGENIC
2L	10181648	2L_10181648_SNP [dm3] 2L_10181648_SNP [dm6]	A	G	4.153e^-4	0.851	DOWNSTREAM Sur INTERGENIC	TF binding site mE1_TFBS_inv
2L	18852018	2L_18852018_SNP [dm3] 2L_18852018_SNP [dm6]	A	G	4.161e^-4	0.851	INTRON CG17321
3L	11035936	3L_11035936_INS [dm3] 3L_11042836_INS [dm6]	T	TTAATCTTAAG...	4.165e^-4	0.851	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	7687855	2L_7687855_SNP [dm3] 2L_7687855_SNP [dm6]	C	A	4.169e^-4	0.851	SYNONYMOUS_CODING Myo28B1
2L	7687856	2L_7687856_SNP [dm3] 2L_7687856_SNP [dm6]	A	T	4.169e^-4	0.851	NON_SYNONYMOUS_CODING Myo28B1
2R	11811284	2R_11811284_SNP [dm3] 2R_15923779_SNP [dm6]	T	C	4.170e^-4	0.851	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
3L	6265004	3L_6265004_SNP [dm3] 3L_6271904_SNP [dm6]	T	C	4.171e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11861590	3L_11861590_INS [dm3] 3L_11868490_INS [dm6]	G	GGCGGGCCAGTCGT...	4.172e^-4	0.851	INTRON CG44837
3R	1394247	3R_1394247_SNP [dm3] 3R_5568525_SNP [dm6]	A	G	4.174e^-4	0.851	UTR_5_PRIME CG2931 UPSTREAM Rheb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18065420	2L_18065420_SNP [dm3] 2L_18065420_SNP [dm6]	A	G	4.175e^-4	0.851	SYNONYMOUS_CODING rdo
2L	18658033	2L_18658033_SNP [dm3] 2L_18658033_SNP [dm6]	A	C	4.178e^-4	0.851	INTRON MESR3
2R	16860660	2R_16860660_SNP [dm3] 2R_20973155_SNP [dm6]	T	G	4.178e^-4	0.851	UTR_3_PRIME CG15649 DOWNSTREAM CG15649	TF binding site mE1_TFBS_cad
3R	1330081	3R_1330081_SNP [dm3] 3R_5504359_SNP [dm6]	C	A	4.195e^-4	0.851	INTERGENIC
3R	27856173	3R_27856173_SNP [dm3] 3R_32030451_SNP [dm6]	A	T	4.196e^-4	0.851	INTERGENIC
2R	20877915	2R_20877915_DEL [dm3] 2R_24990392_DEL [dm6]	TAAACATATAGTCGCCAGTT...	T	4.198e^-4	0.851	UTR_3_PRIME CG3829 DOWNSTREAM zip
X	19387010	X_19387010_SNP [dm3] X_19492977_SNP [dm6]	G	C	4.204e^-4	0.851	SYNONYMOUS_CODING CG12203 UPSTREAM pcm DOWNSTREAM CG12204	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16795867	2R_16795867_SNP [dm3] 2R_20908362_SNP [dm6]	C	T	4.208e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9978924	3L_9978924_SNP [dm3] 3L_9985824_SNP [dm6]	T	A	4.212e^-4	0.851	INTRON dpr6
3L	6242130	3L_6242130_SNP [dm3] 3L_6249030_SNP [dm6]	G	A	4.214e^-4	0.851	INTRON Best2
2L	19819648	2L_19819648_SNP [dm3] 2L_19819648_SNP [dm6]	T	A	4.218e^-4	0.851	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	12208614	3L_12208614_SNP [dm3] 3L_12215514_SNP [dm6]	C	T	4.220e^-4	0.851	INTRON app	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19595289	2L_19595289_SNP [dm3] 2L_19595289_SNP [dm6]	C	T	4.220e^-4	0.851	INTRON Lar
2R	20217898	2R_20217898_SNP [dm3] 2R_24330375_SNP [dm6]	C	T	4.230e^-4	0.851	DOWNSTREAM CR44810 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9978680	3L_9978680_SNP [dm3] 3L_9985580_SNP [dm6]	T	A	4.234e^-4	0.851	INTRON dpr6
2R	17858935	2R_17858935_SNP [dm3] 2R_21971430_SNP [dm6]	G	T	4.237e^-4	0.851	UPSTREAM CG34029 DOWNSTREAM ppk9 INTERGENIC
3R	23909057	3R_23909057_SNP [dm3] 3R_28083335_SNP [dm6]	C	G	4.244e^-4	0.851	SYNONYMOUS_CODING CG34362
3L	9970180	3L_9970180_SNP [dm3] 3L_9977080_SNP [dm6]	C	T	4.248e^-4	0.851	INTRON dpr6
X	3262351	X_3262351_SNP [dm3] X_3368318_SNP [dm6]	C	G	4.251e^-4	0.851	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11188285	2R_11188285_SNP [dm3] 2R_15300780_SNP [dm6]	A	C	4.254e^-4	0.851	INTRON Trpm
3R	1508259	3R_1508259_SNP [dm3] 3R_5682537_SNP [dm6]	G	A	4.257e^-4	0.851	INTRON Rab23
X	17171120	X_17171120_SNP [dm3] X_17277087_SNP [dm6]	G	T	4.259e^-4	0.851	INTRON f
3R	1654822	3R_1654822_SNP [dm3] 3R_5829100_SNP [dm6]	G	T	4.259e^-4	0.851	UPSTREAM glob3 INTERGENIC	transposable element FlyBase
2L	15903404	2L_15903404_SNP [dm3] 2L_15903404_SNP [dm6]	A	C	4.260e^-4	0.851	UPSTREAM CG31821 INTERGENIC
3R	12031979	3R_12031979_SNP [dm3] 3R_16206257_SNP [dm6]	A	T	4.261e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18673646	2L_18673646_INS [dm3] 2L_18673646_INS [dm6]	T	TTATTTATTATGT...	4.269e^-4	0.851	UPSTREAM CG43339 INTRON Mst36Fb
2L	18673651	2L_18673651_MNP [dm3] 2L_18673651_MNP [dm6]	ATT	GGC	4.269e^-4	0.851	UPSTREAM CG43339 INTRON Mst36Fb
X	17615786	X_17615786_DEL [dm3] X_17721753_DEL [dm6]	AAA	A	4.274e^-4	0.851	INTRON CG42684
2R	17867589	2R_17867589_SNP [dm3] 2R_21980084_SNP [dm6]	A	G	4.277e^-4	0.851	SYNONYMOUS_CODING Gr58a UPSTREAM Gr58b	TF binding site mE1_TFBS_cad
3R	26863468	3R_26863468_SNP [dm3] 3R_31037746_SNP [dm6]	G	T	4.278e^-4	0.851	INTERGENIC
2L	7907211	2L_7907211_SNP [dm3] 2L_7907211_SNP [dm6]	A	C	4.279e^-4	0.851	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16742382	3L_16742382_SNP [dm3] 3L_16749282_SNP [dm6]	G	T	4.298e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14138873	3L_14138873_SNP [dm3] 3L_14145773_SNP [dm6]	G	A	4.307e^-4	0.851	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	2848944	X_2848944_SNP [dm3] X_2954911_SNP [dm6]	G	A	4.315e^-4	0.851	SYNONYMOUS_CODING rst INTRON kirre	TF binding site mE1_TFBS_cad
2L	5730688	2L_5730688_SNP [dm3] 2L_5730688_SNP [dm6]	G	T	4.316e^-4	0.851	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7779843	3L_7779843_SNP [dm3] 3L_7786743_SNP [dm6]	G	A	4.327e^-4	0.851	INTRON CG32369
3L	17230763	3L_17230763_SNP [dm3] 3L_17237663_SNP [dm6]	G	A	4.327e^-4	0.851	DOWNSTREAM CG6512 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11285610	3R_11285610_SNP [dm3] 3R_15459888_SNP [dm6]	C	G	4.328e^-4	0.851	INTRON AdamTS-A
2L	18658026	2L_18658026_SNP [dm3] 2L_18658026_SNP [dm6]	A	G	4.334e^-4	0.851	INTRON MESR3
2R	19001027	2R_19001027_SNP [dm3] 2R_23113504_SNP [dm6]	T	C	4.340e^-4	0.851	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14275471	2R_14275471_SNP [dm3] 2R_18387966_SNP [dm6]	A	G	4.342e^-4	0.851	UTR_5_PRIME IM3 UPSTREAM IM3 DOWNSTREAM IM2
2R	11511187	2R_11511187_SNP [dm3] 2R_15623682_SNP [dm6]	G	A	4.350e^-4	0.851	INTRON CG42524	TF binding site mE1_TFBS_chinmo
2L	786885	2L_786885_SNP [dm3] 2L_786885_SNP [dm6]	G	A	4.353e^-4	0.851	SYNONYMOUS_CODING Pkg21D UTR_3_PRIME CG3544 DOWNSTREAM CG3544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12003421	2R_12003421_SNP [dm3] 2R_16115916_SNP [dm6]	T	C	4.358e^-4	0.851	SYNONYMOUS_CODING Asph UTR_3_PRIME Asph
3L	6372625	3L_6372625_SNP [dm3] 3L_6379525_SNP [dm6]	A	G	4.360e^-4	0.851	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13597769	2R_13597769_SNP [dm3] 2R_17710264_SNP [dm6]	T	A	4.365e^-4	0.851	INTRON CG6424
2L	18040041	2L_18040041_SNP [dm3] 2L_18040041_SNP [dm6]	A	G	4.365e^-4	0.851	INTRON rdo
X	17062553	X_17062553_DEL [dm3] X_17168520_DEL [dm6]	AAAAAA	A	4.382e^-4	0.851	INTRON baz
2L	5149610	2L_5149610_SNP [dm3] 2L_5149610_SNP [dm6]	G	T	4.386e^-4	0.851	INTRON Msp300
2L	2284575	2L_2284575_SNP [dm3] 2L_2284575_SNP [dm6]	A	G	4.392e^-4	0.851	UPSTREAM CG4271 INTRON CR43754 EXON CR43754	TF binding site mE1_TFBS_inv
3L	13168957	3L_13168957_SNP [dm3] 3L_13175857_SNP [dm6]	T	C	4.399e^-4	0.851	SYNONYMOUS_CODING snky
3L	1841199	3L_1841199_SNP [dm3] 3L_1841199_SNP [dm6]	C	G	4.401e^-4	0.851	INTRON Cpr62Bc	TF binding site mE1_TFBS_chinmo
3L	9749287	3L_9749287_SNP [dm3] 3L_9756187_SNP [dm6]	T	C	4.409e^-4	0.851	INTRON CG42268
2L	11799801	2L_11799801_SNP [dm3] 2L_11799801_SNP [dm6]	C	T	4.409e^-4	0.851	INTRON crol
2R	14399900	2R_14399900_SNP [dm3] 2R_18512395_SNP [dm6]	A	C	4.410e^-4	0.851	INTERGENIC
X	12594953	X_12594953_SNP [dm3] X_12700920_SNP [dm6]	G	A	4.412e^-4	0.851	INTRON Smr
X	11496915	X_11496915_DEL [dm3] X_11602882_DEL [dm6]	AGGGACTTTC	A	4.425e^-4	0.851	DOWNSTREAM CG2533 INTRON rho-4
2R	19400635	2R_19400635_SNP [dm3] 2R_23513112_SNP [dm6]	G	A	4.427e^-4	0.851	UPSTREAM CG3906 INTERGENIC
2R	9875167	2R_9875167_SNP [dm3] 2R_13987662_SNP [dm6]	C	T	4.428e^-4	0.851	UTR_3_PRIME RN-tre INTRON RN-tre
3L	13297521	3L_13297521_SNP [dm3] 3L_13304421_SNP [dm6]	A	G	4.437e^-4	0.851	DOWNSTREAM CR44555 INTERGENIC
3L	3885802	3L_3885802_SNP [dm3] 3L_3885802_SNP [dm6]	A	T	4.439e^-4	0.851	INTERGENIC
X	18374812	X_18374812_SNP [dm3] X_18480779_SNP [dm6]	C	G	4.439e^-4	0.851	INTRON Hayan EXON CR45714
2R	19490519	2R_19490519_SNP [dm3] 2R_23602996_SNP [dm6]	G	C	4.444e^-4	0.851	NON_SYNONYMOUS_CODING CG5398 UPSTREAM CG43209 DOWNSTREAM CG17664	TF binding site mE1_TFBS_chinmo
2L	12081304	2L_12081304_SNP [dm3] 2L_12081304_SNP [dm6]	G	A	4.457e^-4	0.851	DOWNSTREAM CR44591 EXON CR44590	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	9830164	3R_9830164_SNP [dm3] 3R_14004442_SNP [dm6]	C	T	4.461e^-4	0.851	INTRON rdx
3L	14978572	3L_14978572_SNP [dm3] 3L_14985472_SNP [dm6]	T	C	4.469e^-4	0.851	DOWNSTREAM CG5114 INTRON mnd	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	11438219	2L_11438219_SNP [dm3] 2L_11438219_SNP [dm6]	G	A	4.481e^-4	0.851	SYNONYMOUS_CODING salm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17043916	2R_17043916_SNP [dm3] 2R_21156411_SNP [dm6]	T	C	4.490e^-4	0.851	INTRON CG30389	TF binding site BDTNP1_TFBS_twi
3L	15723370	3L_15723370_SNP [dm3] 3L_15730270_SNP [dm6]	G	A	4.490e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	750253	3L_750253_SNP [dm3] 3L_750253_SNP [dm6]	G	A	4.491e^-4	0.851	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3L	13951575	3L_13951575_SNP [dm3] 3L_13958475_SNP [dm6]	A	T	4.495e^-4	0.851	INTRON CG32137	TF binding site mE1_TFBS_inv
2L	18610558	2L_18610558_SNP [dm3] 2L_18610558_SNP [dm6]	T	C	4.501e^-4	0.851	NON_SYNONYMOUS_CODING Atac2
2L	18610893	2L_18610893_SNP [dm3] 2L_18610893_SNP [dm6]	T	C	4.501e^-4	0.851	NON_SYNONYMOUS_CODING Atac2
2R	12848074	2R_12848074_INS [dm3] 2R_16960569_INS [dm6]	T	TATGT	4.501e^-4	0.851	UPSTREAM CG9010 INTERGENIC
2R	17645600	2R_17645600_SNP [dm3] 2R_21758095_SNP [dm6]	C	A	4.502e^-4	0.851	DOWNSTREAM Grx-1 INTERGENIC
3R	6808879	3R_6808879_SNP [dm3] 3R_10983157_SNP [dm6]	G	A	4.513e^-4	0.851	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7998884	3L_7998884_SNP [dm3] 3L_8005784_SNP [dm6]	A	T	4.515e^-4	0.851	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16790412	X_16790412_SNP [dm3] X_16896379_SNP [dm6]	T	C	4.520e^-4	0.851	UTR_3_PRIME CG33252
3R	9871739	3R_9871739_SNP [dm3] 3R_14046017_SNP [dm6]	A	T	4.521e^-4	0.851	INTERGENIC
2R	19614073	2R_19614073_SNP [dm3] 2R_23726550_SNP [dm6]	T	G	4.536e^-4	0.851	INTRON Sesn
X	3170377	X_3170377_SNP [dm3] X_3276344_SNP [dm6]	T	C	4.541e^-4	0.851	INTRON dnc
X	9444227	X_9444227_SNP [dm3] X_9550194_SNP [dm6]	C	T	4.550e^-4	0.851	DOWNSTREAM l_1_G0320 INTRON CG32700
2R	16730360	2R_16730360_SNP [dm3] 2R_20842855_SNP [dm6]	T	A	4.552e^-4	0.851	INTERGENIC
3L	6264312	3L_6264312_SNP [dm3] 3L_6271212_SNP [dm6]	G	T	4.566e^-4	0.851	INTERGENIC
3R	18585549	3R_18585549_SNP [dm3] 3R_22759827_SNP [dm6]	C	T	4.568e^-4	0.851	SYNONYMOUS_CODING CG4725 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18066942	2L_18066942_SNP [dm3] 2L_18066942_SNP [dm6]	C	G	4.571e^-4	0.851	INTRON rdo
3R	15918271	3R_15918271_SNP [dm3] 3R_20092549_SNP [dm6]	C	T	4.572e^-4	0.851	INTERGENIC
3L	8438225	3L_8438225_SNP [dm3] 3L_8445125_SNP [dm6]	C	T	4.574e^-4	0.851	INTRON CG6983	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8507202	2R_8507202_SNP [dm3] 2R_12619697_SNP [dm6]	C	A	4.591e^-4	0.851	UTR_3_PRIME CG45086 & 1 other DOWNSTREAM Galphaq	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	4793576	X_4793576_SNP [dm3] X_4899543_SNP [dm6]	A	G	4.591e^-4	0.851	INTRON CG42594	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9058293	2R_9058293_SNP [dm3] 2R_13170788_SNP [dm6]	C	T	4.599e^-4	0.851	UPSTREAM AGBE & 1 other DOWNSTREAM Spt-I INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
3L	2433510	3L_2433510_SNP [dm3] 3L_2433510_SNP [dm6]	A	G	4.600e^-4	0.851	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8471871	3L_8471871_SNP [dm3] 3L_8478771_SNP [dm6]	G	A	4.616e^-4	0.851	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18687862	3R_18687862_SNP [dm3] 3R_22862140_SNP [dm6]	A	C	4.617e^-4	0.851	INTERGENIC
2R	17858996	2R_17858996_SNP [dm3] 2R_21971491_SNP [dm6]	C	A	4.618e^-4	0.851	UPSTREAM CG34029 DOWNSTREAM ppk9 INTERGENIC
3L	6238776	3L_6238776_SNP [dm3] 3L_6245676_SNP [dm6]	C	T	4.619e^-4	0.851	UTR_5_PRIME Mdr65 DOWNSTREAM Best2
2R	7460364	2R_7460364_SNP [dm3] 2R_11572859_SNP [dm6]	C	A	4.622e^-4	0.851	INTERGENIC
2R	9664263	2R_9664263_SNP [dm3] 2R_13776758_SNP [dm6]	G	T	4.625e^-4	0.851	INTRON Cpr50Ca
3L	7264349	3L_7264349_SNP [dm3] 3L_7271249_SNP [dm6]	G	C	4.626e^-4	0.851	INTRON unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15411001	2R_15411001_SNP [dm3] 2R_19523496_SNP [dm6]	T	G	4.630e^-4	0.851	UTR_3_PRIME sm DOWNSTREAM sm
3L	17227245	3L_17227245_SNP [dm3] 3L_17234145_SNP [dm6]	G	A	4.630e^-4	0.851	INTRON Rbp6	TF binding site BDTNP1_TFBS_twi
3L	3581125	3L_3581125_SNP [dm3] 3L_3581125_SNP [dm6]	A	G	4.634e^-4	0.851	INTRON Eip63E
X	18866933	X_18866933_SNP [dm3] X_18972900_SNP [dm6]	C	T	4.634e^-4	0.851	INTRON CG43759
2L	18617023	2L_18617023_SNP [dm3] 2L_18617023_SNP [dm6]	T	C	4.635e^-4	0.851	UPSTREAM CG15161 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1961982	2L_1961982_SNP [dm3] 2L_1961982_SNP [dm6]	A	C	4.640e^-4	0.851	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18474835	X_18474835_DEL [dm3] X_18580802_DEL [dm6]	TT	T	4.644e^-4	0.851	INTERGENIC
3L	14381570	3L_14381570_SNP [dm3] 3L_14388470_SNP [dm6]	T	G	4.652e^-4	0.851	INTERGENIC
2L	2835255	2L_2835255_SNP [dm3] 2L_2835255_SNP [dm6]	C	A	4.654e^-4	0.851	SPLICE_SITE_REGION CG3119 SYNONYMOUS_CODING CG3119 DOWNSTREAM CG3119
3L	10027411	3L_10027411_SNP [dm3] 3L_10034311_SNP [dm6]	A	G	4.654e^-4	0.851	INTRON dpr6
X	1573996	X_1573996_SNP [dm3] X_1679963_SNP [dm6]	A	T	4.664e^-4	0.851	DOWNSTREAM CG32809 INTRON CG32809
X	20208419	X_20208419_SNP [dm3] X_20337392_SNP [dm6]	T	A	4.664e^-4	0.851	INTERGENIC
2L	441169	2L_441169_SNP [dm3] 2L_441169_SNP [dm6]	C	T	4.682e^-4	0.851	INTRON ex	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	17220133	3L_17220133_SNP [dm3] 3L_17227033_SNP [dm6]	T	G	4.686e^-4	0.851	INTRON Rbp6
2R	8515640	2R_8515640_SNP [dm3] 2R_12628135_SNP [dm6]	A	C	4.689e^-4	0.851	DOWNSTREAM muskelin INTRON CG17760
2R	16677373	2R_16677373_SNP [dm3] 2R_20789868_SNP [dm6]	G	C	4.693e^-4	0.851	SYNONYMOUS_CODING CG43667 UPSTREAM CG43666 DOWNSTREAM CG43677
3L	1415717	3L_1415717_SNP [dm3] 3L_1415717_SNP [dm6]	C	G	4.693e^-4	0.851	UPSTREAM FucTD INTRON Ptp61F
3L	14381532	3L_14381532_SNP [dm3] 3L_14388432_SNP [dm6]	C	T	4.697e^-4	0.851	INTERGENIC
X	18451173	X_18451173_DEL [dm3] X_18557140_DEL [dm6]	GT	G	4.708e^-4	0.851	INTRON Bx
X	3729801	X_3729801_SNP [dm3] X_3835768_SNP [dm6]	G	C	4.709e^-4	0.851	UPSTREAM ec INTRON ec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10371323	3R_10371323_SNP [dm3] 3R_14545601_SNP [dm6]	C	A	4.720e^-4	0.851	INTRON Pde6
3R	1502654	3R_1502654_SNP [dm3] 3R_5676932_SNP [dm6]	C	T	4.721e^-4	0.851	INTRON Atg17	transposable element FlyBase
2L	2721569	2L_2721569_SNP [dm3] 2L_2721569_SNP [dm6]	C	T	4.750e^-4	0.851	INTERGENIC
3R	24710320	3R_24710320_SNP [dm3] 3R_28884598_SNP [dm6]	A	G	4.764e^-4	0.851	SYNONYMOUS_CODING CG14526 INTRON CG33203	TF binding site mE1_TFBS_HSA
3R	25052909	3R_25052909_SNP [dm3] 3R_29227187_SNP [dm6]	C	A	4.764e^-4	0.851	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
2R	12016805	2R_12016805_SNP [dm3] 2R_16129300_SNP [dm6]	A	G	4.772e^-4	0.851	INTRON spin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	14912925	3L_14912925_DEL [dm3] 3L_14919825_DEL [dm6]	CC	C	4.775e^-4	0.851	INTRON DCX-EMAP
3L	9608898	3L_9608898_SNP [dm3] 3L_9615798_SNP [dm6]	G	T	4.787e^-4	0.851	UPSTREAM LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	2291941	X_2291941_SNP [dm3] X_2397908_SNP [dm6]	C	T	4.793e^-4	0.851	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	19819640	2L_19819640_SNP [dm3] 2L_19819640_SNP [dm6]	C	G	4.795e^-4	0.851	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn

By genomic position
Variant impact
Gene name

PercentEarly phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results