DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.016e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1721 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	21752807	3R_21752807_SNP [dm3] 3R_25927085_SNP [dm6]	C	T	2.599e^-6	1	INTRON CCAP-R
3L	17678545	3L_17678545_SNP [dm3] 3L_17685445_SNP [dm6]	T	A	5.400e^-6	1	INTERGENIC
3L	19512147	3L_19512147_SNP [dm3] 3L_19519047_SNP [dm6]	T	C	5.468e^-6	1	UPSTREAM Cpr76Ba & 1 other INTERGENIC
X	3808104	X_3808104_INS [dm3] X_3914071_INS [dm6]	A	AC	6.817e^-6	1	INTRON CG42541
2L	16433604	2L_16433604_SNP [dm3] 2L_16433604_SNP [dm6]	T	C	9.117e^-6	1	INTRON CG5888
2R	17597884	2R_17597884_SNP [dm3] 2R_21710379_SNP [dm6]	T	C	9.299e^-6	1	SYNONYMOUS_CODING CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl
3R	24346974	3R_24346974_SNP [dm3] 3R_28521252_SNP [dm6]	A	G	9.931e^-6	1	SYNONYMOUS_CODING Ppn UPSTREAM CG31051
X	19350360	X_19350360_SNP [dm3] X_19456327_SNP [dm6]	G	C	1.007e^-5	1	INTRON kek5
X	7069461	X_7069461_DEL [dm3] X_7175428_DEL [dm6]	GT	A	1.063e^-5	1	INTRON CG9650 & 1 other
2R	18369300	2R_18369300_SNP [dm3] 2R_22481795_SNP [dm6]	G	A	1.213e^-5	1	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9687719	2R_9687719_SNP [dm3] 2R_13800214_SNP [dm6]	C	G	1.548e^-5	1	INTRON Cpr50Cb
X	11275463	X_11275463_DEL [dm3] X_11381430_DEL [dm6]	ACAAGTCTATTGAT...	A	1.646e^-5	1	INTRON dlg1
3R	22705704	3R_22705704_SNP [dm3] 3R_26879982_SNP [dm6]	G	T	1.736e^-5	1	INTRON ro & 1 other	TF binding site mE1_TFBS_inv
3L	8313256	3L_8313256_SNP [dm3] 3L_8320156_SNP [dm6]	T	C	1.791e^-5	1	UPSTREAM CG13670 INTERGENIC
2L	14361074	2L_14361074_SNP [dm3] 2L_14361074_SNP [dm6]	C	T	1.813e^-5	1	SYNONYMOUS_CODING Pgant35A UPSTREAM spel1 EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14938729	2L_14938729_SNP [dm3] 2L_14938729_SNP [dm6]	A	C	2.026e^-5	1	INTRON CG42313
3L	14097076	3L_14097076_SNP [dm3] 3L_14103976_SNP [dm6]	T	G	2.093e^-5	1	UTR_3_PRIME Sox21a
2R	18369462	2R_18369462_SNP [dm3] 2R_22481957_SNP [dm6]	G	T	2.150e^-5	1	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6251554	X_6251554_SNP [dm3] X_6357521_SNP [dm6]	C	T	2.281e^-5	1	INTRON kdn
X	11275288	X_11275288_SNP [dm3] X_11381255_SNP [dm6]	C	T	2.284e^-5	1	INTRON dlg1
2R	16815156	2R_16815156_SNP [dm3] 2R_20927651_SNP [dm6]	A	T	2.403e^-5	1	INTRON Rx
3L	11384309	3L_11384309_SNP [dm3] 3L_11391209_SNP [dm6]	A	C	2.437e^-5	1	INTERGENIC
3R	23344528	3R_23344528_SNP [dm3] 3R_27518806_SNP [dm6]	A	G	2.486e^-5	1	INTERGENIC
2R	19835558	2R_19835558_SNP [dm3] 2R_23948035_SNP [dm6]	C	A	2.502e^-5	1	NON_SYNONYMOUS_CODING CG13565 INTRON CG13565
3L	1419650	3L_1419650_SNP [dm3] 3L_1419650_SNP [dm6]	T	C	2.662e^-5	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14938737	2L_14938737_SNP [dm3] 2L_14938737_SNP [dm6]	C	T	2.701e^-5	1	INTRON CG42313
X	11275483	X_11275483_DEL [dm3] X_11381450_DEL [dm6]	TTGATAGC	T	2.746e^-5	1	INTRON dlg1
X	17578858	X_17578858_SNP [dm3] X_17684825_SNP [dm6]	C	T	2.921e^-5	1	INTRON chas
X	10279771	X_10279771_SNP [dm3] X_10385738_SNP [dm6]	A	G	2.960e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	1416797	3L_1416797_SNP [dm3] 3L_1416797_SNP [dm6]	A	T	3.022e^-5	1	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	3050309	2L_3050309_SNP [dm3] 2L_3050309_SNP [dm6]	C	T	3.077e^-5	1	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16433603	2L_16433603_SNP [dm3] 2L_16433603_SNP [dm6]	C	T	3.135e^-5	1	INTRON CG5888
3R	23620849	3R_23620849_SNP [dm3] 3R_27795127_SNP [dm6]	G	A	3.418e^-5	1	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7090625	2L_7090625_SNP [dm3] 2L_7090625_SNP [dm6]	T	G	3.503e^-5	1	INTERGENIC
X	10279766	X_10279766_INS [dm3] X_10385733_INS [dm6]	T	TGGTCTAAAATATGCCAGTT...	3.546e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	5574450	2R_5574450_SNP [dm3] 2R_9686945_SNP [dm6]	T	C	3.595e^-5	1	INTERGENIC
2R	10828956	2R_10828956_SNP [dm3] 2R_14941451_SNP [dm6]	A	G	3.679e^-5	1	UPSTREAM CG10257 DOWNSTREAM Lap1 INTERGENIC
X	17578861	X_17578861_SNP [dm3] X_17684828_SNP [dm6]	G	A	3.691e^-5	1	INTRON chas
2L	6817002	2L_6817002_DEL [dm3] 2L_6817002_DEL [dm6]	ATAGCGAA	A	3.752e^-5	1	INTERGENIC
2L	6817015	2L_6817015_SNP [dm3] 2L_6817015_SNP [dm6]	C	A	3.752e^-5	1	INTERGENIC
2L	6817020	2L_6817020_DEL [dm3] 2L_6817020_DEL [dm6]	TC	A	3.752e^-5	1	INTERGENIC
X	17578863	X_17578863_SNP [dm3] X_17684830_SNP [dm6]	A	T	3.796e^-5	1	INTRON chas
X	10279715	X_10279715_SNP [dm3] X_10385682_SNP [dm6]	G	A	3.806e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	9977513	3L_9977513_SNP [dm3] 3L_9984413_SNP [dm6]	C	T	3.817e^-5	1	INTRON dpr6
X	8725584	X_8725584_SNP [dm3] X_8831551_SNP [dm6]	C	G	3.857e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17693827	3L_17693827_SNP [dm3] 3L_17700727_SNP [dm6]	T	C	3.897e^-5	1	INTRON Ccn
3L	1533743	3L_1533743_SNP [dm3] 3L_1533743_SNP [dm6]	T	C	3.910e^-5	1	SYNONYMOUS_CODING CG12090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10542155	2R_10542155_SNP [dm3] 2R_14654650_SNP [dm6]	A	C	3.996e^-5	1	INTERGENIC
3L	7711802	3L_7711802_SNP [dm3] 3L_7718702_SNP [dm6]	C	T	4.122e^-5	1	UPSTREAM CG12262 & 1 other INTRON CG32373
3L	7388013	3L_7388013_SNP [dm3] 3L_7394913_SNP [dm6]	C	A	4.160e^-5	1	INTRON CG8563
3L	13453182	3L_13453182_SNP [dm3] 3L_13460082_SNP [dm6]	A	G	4.164e^-5	1	UTR_5_PRIME CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10279691	X_10279691_SNP [dm3] X_10385658_SNP [dm6]	C	T	4.188e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	11275503	X_11275503_SNP [dm3] X_11381470_SNP [dm6]	C	T	4.211e^-5	1	INTRON dlg1
X	10279623	X_10279623_SNP [dm3] X_10385590_SNP [dm6]	A	G	4.242e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4094991	2R_4094991_SNP [dm3] 2R_8207486_SNP [dm6]	A	G	4.355e^-5	1	INTRON LRP1
3R	23344502	3R_23344502_SNP [dm3] 3R_27518780_SNP [dm6]	T	C	4.364e^-5	1	INTERGENIC
X	8725581	X_8725581_SNP [dm3] X_8831548_SNP [dm6]	G	A	4.385e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13429230	2L_13429230_SNP [dm3] 2L_13429230_SNP [dm6]	T	A	4.456e^-5	1	INTRON CG42784
3L	7388002	3L_7388002_SNP [dm3] 3L_7394902_SNP [dm6]	T	C	4.536e^-5	1	INTRON CG8563
3R	25434942	3R_25434942_DEL [dm3] 3R_29609220_DEL [dm6]	ATCAATTCAACTCGAGTGTC...	A	4.549e^-5	1	DOWNSTREAM Diedel2 INTRON alph
3R	26781656	3R_26781656_SNP [dm3] 3R_30955934_SNP [dm6]	T	A	4.610e^-5	1	INTERGENIC
X	10279705	X_10279705_DEL [dm3] X_10385672_DEL [dm6]	AT	A	4.652e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	6817012	2L_6817012_SNP [dm3] 2L_6817012_SNP [dm6]	T	C	4.668e^-5	1	INTERGENIC
X	10279568	X_10279568_SNP [dm3] X_10385535_SNP [dm6]	A	G	4.687e^-5	1	START_GAINED Psf3 UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6424202	2R_6424202_SNP [dm3] 2R_10536697_SNP [dm6]	A	G	4.697e^-5	1	UPSTREAM snoRNA:lola-a DOWNSTREAM snoRNA:lola-b & 2 others INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	2602978	X_2602978_SNP [dm3] X_2708945_SNP [dm6]	C	A	4.793e^-5	1	UTR_5_PRIME CG2681	TF binding site mE1_TFBS_chinmo
2L	4462981	2L_4462981_SNP [dm3] 2L_4462981_SNP [dm6]	A	T	4.800e^-5	1	UTR_5_PRIME CG15443 UPSTREAM CG15436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6424204	2R_6424204_SNP [dm3] 2R_10536699_SNP [dm6]	A	G	4.816e^-5	1	UPSTREAM snoRNA:lola-a DOWNSTREAM snoRNA:lola-b & 2 others INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	10279557	X_10279557_SNP [dm3] X_10385524_SNP [dm6]	A	T	4.886e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13453161	3L_13453161_SNP [dm3] 3L_13460061_SNP [dm6]	T	G	4.943e^-5	1	UTR_5_PRIME CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13453169	3L_13453169_SNP [dm3] 3L_13460069_SNP [dm6]	G	A	4.962e^-5	1	UTR_5_PRIME CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21267468	3R_21267468_SNP [dm3] 3R_25441746_SNP [dm6]	C	T	5.012e^-5	1	INTRON Fur1	TF binding site mE1_TFBS_Kr
X	8725824	X_8725824_DEL [dm3] X_8831791_DEL [dm6]	TTTGGGATGCCGGCTG...	T	5.015e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12910908	2L_12910908_SNP [dm3] 2L_12910908_SNP [dm6]	C	G	5.017e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8387879	2R_8387879_SNP [dm3] 2R_12500374_SNP [dm6]	C	T	5.061e^-5	1	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11952345	X_11952345_SNP [dm3] X_12058312_SNP [dm6]	G	A	5.088e^-5	1	INTRON CR43960 & 1 other
X	10279548	X_10279548_SNP [dm3] X_10385515_SNP [dm6]	T	A	5.089e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	25358938	3R_25358938_SNP [dm3] 3R_29533216_SNP [dm6]	G	T	5.107e^-5	1	INTERGENIC
2L	11622482	2L_11622482_SNP [dm3] 2L_11622482_SNP [dm6]	C	T	5.117e^-5	1	SYNONYMOUS_CODING kek2	TF binding site mE1_TFBS_chinmo
2L	6299395	2L_6299395_SNP [dm3] 2L_6299395_SNP [dm6]	C	T	5.119e^-5	1	INTRON Ddr
X	3808064	X_3808064_SNP [dm3] X_3914031_SNP [dm6]	C	T	5.127e^-5	1	INTRON CG42541
3L	3205794	3L_3205794_SNP [dm3] 3L_3205794_SNP [dm6]	G	A	5.191e^-5	1	SYNONYMOUS_CODING CG33160 UPSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
2L	6817017	2L_6817017_SNP [dm3] 2L_6817017_SNP [dm6]	T	G	5.206e^-5	1	INTERGENIC
X	8725587	X_8725587_SNP [dm3] X_8831554_SNP [dm6]	A	T	5.291e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10279398	X_10279398_SNP [dm3] X_10385365_SNP [dm6]	T	G	5.305e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3105577	2L_3105577_SNP [dm3] 2L_3105577_SNP [dm6]	G	C	5.313e^-5	1	INTRON toc
X	10279628	X_10279628_SNP [dm3] X_10385595_SNP [dm6]	T	A	5.414e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	10279395	X_10279395_SNP [dm3] X_10385362_SNP [dm6]	A	T	5.527e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22262817	3R_22262817_SNP [dm3] 3R_26437095_SNP [dm6]	T	G	5.568e^-5	1	INTERGENIC
3L	16012475	3L_16012475_SNP [dm3] 3L_16019375_SNP [dm6]	A	T	5.630e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4008317	2L_4008317_SNP [dm3] 2L_4008317_SNP [dm6]	T	A	5.773e^-5	1	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
X	10279611	X_10279611_SNP [dm3] X_10385578_SNP [dm6]	G	A	5.800e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	8126406	3R_8126406_SNP [dm3] 3R_12300684_SNP [dm6]	G	C	5.933e^-5	1	INTRON svp	TF binding site mE1_TFBS_cad
2L	18615685	2L_18615685_SNP [dm3] 2L_18615685_SNP [dm6]	C	T	5.969e^-5	1	SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18369501	2R_18369501_SNP [dm3] 2R_22481996_SNP [dm6]	C	T	6.009e^-5	1	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13842057	3R_13842057_SNP [dm3] 3R_18016335_SNP [dm6]	A	T	6.121e^-5	1	UTR_3_PRIME cpo DOWNSTREAM cpo
2L	4711611	2L_4711611_SNP [dm3] 2L_4711611_SNP [dm6]	G	A	6.228e^-5	1	INTRON CG34351	TF binding site mE1_TFBS_chinmo
X	10279597	X_10279597_SNP [dm3] X_10385564_SNP [dm6]	A	T	6.293e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8430389	2R_8430389_SNP [dm3] 2R_12542884_SNP [dm6]	G	A	6.419e^-5	1	INTRON fra
3L	1150452	3L_1150452_SNP [dm3] 3L_1150452_SNP [dm6]	C	T	6.454e^-5	1	INTRON bab2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17693597	3L_17693597_SNP [dm3] 3L_17700497_SNP [dm6]	T	A	6.524e^-5	1	INTRON Ccn	transposable element FlyBase
2L	7470345	2L_7470345_SNP [dm3] 2L_7470345_SNP [dm6]	T	G	6.544e^-5	1	UPSTREAM CG6055 INTRON CG6055
3L	1419624	3L_1419624_SNP [dm3] 3L_1419624_SNP [dm6]	C	T	6.747e^-5	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14003700	2R_14003700_SNP [dm3] 2R_18116195_SNP [dm6]	C	A	6.794e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20119551	3R_20119551_SNP [dm3] 3R_24293829_SNP [dm6]	A	G	6.817e^-5	1	SYNONYMOUS_CODING CG5715 DOWNSTREAM CG6364	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14417357	2L_14417357_SNP [dm3] 2L_14417357_SNP [dm6]	T	C	6.825e^-5	1	UPSTREAM Pburs INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10892917	2L_10892917_SNP [dm3] 2L_10892917_SNP [dm6]	G	T	6.859e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
X	7058866	X_7058866_SNP [dm3] X_7164833_SNP [dm6]	T	C	6.955e^-5	1	INTRON CG9650
2R	8387738	2R_8387738_SNP [dm3] 2R_12500233_SNP [dm6]	A	G	7.022e^-5	1	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11952342	X_11952342_SNP [dm3] X_12058309_SNP [dm6]	C	T	7.033e^-5	1	INTRON CR43960 & 1 other
2L	953631	2L_953631_INS [dm3] 2L_953631_INS [dm6]	C	CAGGTGGCTTTAAAGCGGTC...	7.049e^-5	1	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6299236	2L_6299236_SNP [dm3] 2L_6299236_SNP [dm6]	C	T	7.146e^-5	1	INTRON Ddr
X	10280178	X_10280178_SNP [dm3] X_10386145_SNP [dm6]	A	G	7.168e^-5	1	UTR_5_PRIME flw UPSTREAM Psf3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8898462	X_8898462_SNP [dm3] X_9004429_SNP [dm6]	G	C	7.181e^-5	1	INTRON rdgA & 1 other
X	8898463	X_8898463_SNP [dm3] X_9004430_SNP [dm6]	G	T	7.181e^-5	1	INTRON rdgA & 1 other
2L	10892815	2L_10892815_SNP [dm3] 2L_10892815_SNP [dm6]	C	A	7.296e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3L	16647393	3L_16647393_SNP [dm3] 3L_16654293_SNP [dm6]	T	G	7.317e^-5	1	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
X	8577473	X_8577473_SNP [dm3] X_8683440_SNP [dm6]	A	G	7.319e^-5	1	INTRON CG11284	TF binding site mE1_TFBS_sens
2R	7292862	2R_7292862_SNP [dm3] 2R_11405357_SNP [dm6]	A	G	7.373e^-5	1	UPSTREAM CG7759 & 1 other DOWNSTREAM tRNA:CR45106 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10279576	X_10279576_SNP [dm3] X_10385543_SNP [dm6]	T	A	7.431e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	9507891	X_9507891_SNP [dm3] X_9613858_SNP [dm6]	C	T	7.445e^-5	1	INTRON CG42797
2R	17597604	2R_17597604_SNP [dm3] 2R_21710099_SNP [dm6]	C	T	7.488e^-5	1	UTR_3_PRIME CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8725823	X_8725823_SNP [dm3] X_8831790_SNP [dm6]	G	A	7.591e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4636932	3L_4636932_INS [dm3] 3L_4636932_INS [dm6]	T	TTT	7.593e^-5	1	UTR_3_PRIME axo INTRON axo
X	7058887	X_7058887_SNP [dm3] X_7164854_SNP [dm6]	C	T	7.641e^-5	1	INTRON CG9650
2L	3240659	2L_3240659_SNP [dm3] 2L_3240659_SNP [dm6]	G	A	7.682e^-5	1	INTERGENIC
X	10279788	X_10279788_SNP [dm3] X_10385755_SNP [dm6]	A	T	7.720e^-5	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	20473469	2R_20473469_SNP [dm3] 2R_24585946_SNP [dm6]	G	A	7.746e^-5	1	INTRON pio
X	7600884	X_7600884_SNP [dm3] X_7706851_SNP [dm6]	T	C	7.847e^-5	1	UPSTREAM CR43287 INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	13529784	2R_13529784_SNP [dm3] 2R_17642279_SNP [dm6]	G	T	7.970e^-5	1	INTERGENIC
X	19350337	X_19350337_DEL [dm3] X_19456304_DEL [dm6]	AATGTGTGTGT...	A	8.072e^-5	1	INTRON kek5
3L	14309946	3L_14309946_SNP [dm3] 3L_14316846_SNP [dm6]	A	T	8.183e^-5	1	INTRON fz
2L	952804	2L_952804_SNP [dm3] 2L_952804_SNP [dm6]	G	A	8.248e^-5	1	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3874611	3L_3874611_SNP [dm3] 3L_3874611_SNP [dm6]	A	G	8.289e^-5	1	INTERGENIC
X	11952344	X_11952344_SNP [dm3] X_12058311_SNP [dm6]	G	T	8.294e^-5	1	INTRON CR43960 & 1 other
2L	17343293	2L_17343293_SNP [dm3] 2L_17343293_SNP [dm6]	G	T	8.318e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9264245	2R_9264245_SNP [dm3] 2R_13376740_SNP [dm6]	A	T	8.449e^-5	1	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2L	6817099	2L_6817099_SNP [dm3] 2L_6817099_SNP [dm6]	A	G	8.455e^-5	1	INTERGENIC
2R	5116908	2R_5116908_SNP [dm3] 2R_9229403_SNP [dm6]	G	T	8.463e^-5	1	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12088966	2R_12088966_SNP [dm3] 2R_16201461_SNP [dm6]	C	A	8.511e^-5	1	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10535319	2R_10535319_SNP [dm3] 2R_14647814_SNP [dm6]	G	A	8.584e^-5	1	INTERGENIC
2L	4709681	2L_4709681_SNP [dm3] 2L_4709681_SNP [dm6]	T	C	8.638e^-5	1	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14096998	3L_14096998_SNP [dm3] 3L_14103898_SNP [dm6]	A	T	8.684e^-5	1	UTR_3_PRIME Sox21a
3L	2631095	3L_2631095_SNP [dm3] 3L_2631095_SNP [dm6]	T	G	8.733e^-5	1	UPSTREAM CR45660 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7604016	X_7604016_SNP [dm3] X_7709983_SNP [dm6]	C	G	8.743e^-5	1	UPSTREAM CHES-1-like INTERGENIC	TF binding site mE1_TFBS_Trl
3R	24822865	3R_24822865_SNP [dm3] 3R_28997143_SNP [dm6]	G	T	8.772e^-5	1	INTRON wat	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8725582	X_8725582_SNP [dm3] X_8831549_SNP [dm6]	C	T	8.800e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19453883	3R_19453883_INS [dm3] 3R_23628161_INS [dm6]	T	AGATG	8.837e^-5	1	INTRON CG31145
2L	15846592	2L_15846592_SNP [dm3] 2L_15846592_SNP [dm6]	A	T	8.875e^-5	1	UPSTREAM CR43763 INTERGENIC
X	22183973	X_22183973_SNP [dm3] X_22782137_SNP [dm6]	C	T	8.924e^-5	1	INTRON CR44997
3L	1419616	3L_1419616_SNP [dm3] 3L_1419616_SNP [dm6]	A	G	8.945e^-5	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18793135	2R_18793135_SNP [dm3] 2R_22905612_SNP [dm6]	C	T	8.951e^-5	1	INTRON nahoda
2L	15240165	2L_15240165_SNP [dm3] 2L_15240165_SNP [dm6]	T	A	8.974e^-5	1	INTRON ZnT35C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13453151	3L_13453151_SNP [dm3] 3L_13460051_SNP [dm6]	G	A	8.980e^-5	1	UTR_5_PRIME CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7744409	2L_7744409_SNP [dm3] 2L_7744409_SNP [dm6]	G	A	9.057e^-5	1	SYNONYMOUS_CODING CG7214
X	22235141	X_22235141_SNP [dm3] X_22833305_SNP [dm6]	A	G	9.079e^-5	1	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad transposable element FlyBase
2R	18367534	2R_18367534_SNP [dm3] 2R_22480029_SNP [dm6]	G	A	9.136e^-5	1	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20635404	2R_20635404_SNP [dm3] 2R_24747881_SNP [dm6]	G	A	9.176e^-5	1	INTRON CG30421
2R	15274569	2R_15274569_SNP [dm3] 2R_19387064_SNP [dm6]	A	C	9.202e^-5	1	SYNONYMOUS_CODING CG10081
2L	953608	2L_953608_INS [dm3] 2L_953608_INS [dm6]	T	TG	9.255e^-5	1	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9874801	2R_9874801_SNP [dm3] 2R_13987296_SNP [dm6]	A	T	9.287e^-5	1	SYNONYMOUS_CODING RN-tre DOWNSTREAM RN-tre INTRON RN-tre
X	12133201	X_12133201_SNP [dm3] X_12239168_SNP [dm6]	G	A	9.290e^-5	1	INTRON Ten-a
2R	8388152	2R_8388152_SNP [dm3] 2R_12500647_SNP [dm6]	T	G	9.330e^-5	1	NON_SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8576171	X_8576171_SNP [dm3] X_8682138_SNP [dm6]	C	A	9.346e^-5	1	INTRON CG11284	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1420330	3L_1420330_SNP [dm3] 3L_1420330_SNP [dm6]	C	G	9.406e^-5	1	DOWNSTREAM CG9173 INTRON Ptp61F
2R	16900858	2R_16900858_SNP [dm3] 2R_21013353_SNP [dm6]	C	A	9.435e^-5	1	INTRON CG9346	TF binding site mE1_TFBS_sens
X	20588122	X_20588122_SNP [dm3] X_20717095_SNP [dm6]	T	A	9.477e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	18368944	2R_18368944_SNP [dm3] 2R_22481439_SNP [dm6]	C	G	9.507e^-5	1	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15160713	2L_15160713_SNP [dm3] 2L_15160713_SNP [dm6]	A	G	9.517e^-5	1	UPSTREAM CR44771 EXON CR44770
2R	8407388	2R_8407388_SNP [dm3] 2R_12519883_SNP [dm6]	C	A	9.526e^-5	1	NON_SYNONYMOUS_CODING CG8569 UPSTREAM CG8818	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8648817	3L_8648817_SNP [dm3] 3L_8655717_SNP [dm6]	G	T	9.541e^-5	1	INTERGENIC
X	15456942	X_15456942_DEL [dm3] X_15562909_DEL [dm6]	AC	A	9.603e^-5	1	INTERGENIC
2L	953617	2L_953617_SNP [dm3] 2L_953617_SNP [dm6]	G	A	9.618e^-5	1	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22263681	3R_22263681_SNP [dm3] 3R_26437959_SNP [dm6]	C	A	9.633e^-5	1	INTERGENIC
2L	10892918	2L_10892918_SNP [dm3] 2L_10892918_SNP [dm6]	C	T	9.637e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3L	15858011	3L_15858011_SNP [dm3] 3L_15864911_SNP [dm6]	C	A	9.670e^-5	1	INTRON pHCl
X	17578859	X_17578859_SNP [dm3] X_17684826_SNP [dm6]	G	A	9.737e^-5	1	INTRON chas
3L	18842354	3L_18842354_SNP [dm3] 3L_18849254_SNP [dm6]	C	T	9.772e^-5	1	INTERGENIC	insulator Insulator_Class_I.mE01
2R	8870097	2R_8870097_SNP [dm3] 2R_12982592_SNP [dm6]	A	C	9.776e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7599869	X_7599869_SNP [dm3] X_7705836_SNP [dm6]	G	A	9.835e^-5	1	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17343287	2L_17343287_SNP [dm3] 2L_17343287_SNP [dm6]	G	A	9.848e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14097078	3L_14097078_SNP [dm3] 3L_14103978_SNP [dm6]	T	A	9.998e^-5	1	UTR_3_PRIME Sox21a
X	18570213	X_18570213_INS [dm3] X_18676180_INS [dm6]	T	TTACCTACTT	1.006e^-4	1	EXON CR45710
X	17287583	X_17287583_SNP [dm3] X_17393550_SNP [dm6]	T	G	1.017e^-4	1	INTERGENIC
2R	20346104	2R_20346104_SNP [dm3] 2R_24458581_SNP [dm6]	A	C	1.017e^-4	1	INTRON CG13579	TF binding site mE1_TFBS_chinmo
2L	6817018	2L_6817018_SNP [dm3] 2L_6817018_SNP [dm6]	A	G	1.019e^-4	1	INTERGENIC
3L	9965398	3L_9965398_SNP [dm3] 3L_9972298_SNP [dm6]	A	T	1.023e^-4	1	UPSTREAM vnc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	10892915	2L_10892915_SNP [dm3] 2L_10892915_SNP [dm6]	T	A	1.027e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
3L	5346960	3L_5346960_SNP [dm3] 3L_5353860_SNP [dm6]	G	A	1.033e^-4	1	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14096918	3L_14096918_SNP [dm3] 3L_14103818_SNP [dm6]	T	A	1.049e^-4	1	UTR_3_PRIME Sox21a
X	12203995	X_12203995_SNP [dm3] X_12309962_SNP [dm6]	T	G	1.059e^-4	1	INTRON Ten-a
3L	15986029	3L_15986029_SNP [dm3] 3L_15992929_SNP [dm6]	A	G	1.060e^-4	1	UTR_3_PRIME CG5830 DOWNSTREAM Hip14	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12083984	X_12083984_SNP [dm3] X_12189951_SNP [dm6]	C	A	1.061e^-4	1	INTRON Ten-a
3L	3022618	3L_3022618_SNP [dm3] 3L_3022618_SNP [dm6]	C	G	1.068e^-4	1	INTERGENIC
2L	3236134	2L_3236134_SNP [dm3] 2L_3236134_SNP [dm6]	G	A	1.069e^-4	1	INTERGENIC
X	12204167	X_12204167_SNP [dm3] X_12310134_SNP [dm6]	C	T	1.071e^-4	1	INTRON Ten-a
3L	1419577	3L_1419577_SNP [dm3] 3L_1419577_SNP [dm6]	G	A	1.074e^-4	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14096922	3L_14096922_SNP [dm3] 3L_14103822_SNP [dm6]	G	T	1.082e^-4	1	UTR_3_PRIME Sox21a
3L	9965393	3L_9965393_SNP [dm3] 3L_9972293_SNP [dm6]	T	G	1.091e^-4	1	UPSTREAM vnc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	953002	2L_953002_SNP [dm3] 2L_953002_SNP [dm6]	G	T	1.095e^-4	1	NON_SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6455018	2L_6455018_SNP [dm3] 2L_6455018_SNP [dm6]	G	T	1.104e^-4	1	INTRON retm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	10279653	X_10279653_SNP [dm3] X_10385620_SNP [dm6]	T	A	1.114e^-4	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	16647365	3L_16647365_DEL [dm3] 3L_16654265_DEL [dm6]	CGTA	G	1.119e^-4	1	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	12910943	2L_12910943_SNP [dm3] 2L_12910943_SNP [dm6]	T	C	1.125e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	19241830	X_19241830_SNP [dm3] X_19347797_SNP [dm6]	T	G	1.144e^-4	1	UTR_5_PRIME nAChRalpha7 INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_twi
3L	1418085	3L_1418085_SNP [dm3] 3L_1418085_SNP [dm6]	C	T	1.145e^-4	1	DOWNSTREAM FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12361267	3R_12361267_SNP [dm3] 3R_16535545_SNP [dm6]	A	T	1.146e^-4	1	INTRON CG42342
X	12204136	X_12204136_SNP [dm3] X_12310103_SNP [dm6]	C	G	1.159e^-4	1	INTRON Ten-a
2R	8387917	2R_8387917_SNP [dm3] 2R_12500412_SNP [dm6]	A	G	1.165e^-4	1	NON_SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2999329	3L_2999329_INS [dm3] 3L_2999329_INS [dm6]	G	TGGAAATT	1.171e^-4	1	INTERGENIC
2L	12537525	2L_12537525_SNP [dm3] 2L_12537525_SNP [dm6]	G	C	1.177e^-4	1	INTRON bun
2L	18288750	2L_18288750_SNP [dm3] 2L_18288750_SNP [dm6]	G	A	1.189e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	14340808	3L_14340808_DEL [dm3] 3L_14347708_DEL [dm6]	AGTGGAA	A	1.197e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_twi
2L	17464152	2L_17464152_SNP [dm3] 2L_17464152_SNP [dm6]	G	C	1.204e^-4	1	INTRON BicD
2L	11189381	2L_11189381_MNP [dm3] 2L_11189381_MNP [dm6]	TTTCCC	AAATAA	1.209e^-4	1	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5575052	X_5575052_SNP [dm3] X_5681019_SNP [dm6]	T	C	1.217e^-4	1	SYNONYMOUS_CODING Gr5a EXON CR44958
2R	13821694	2R_13821694_SNP [dm3] 2R_17934189_SNP [dm6]	T	C	1.240e^-4	1	INTERGENIC
3L	1414663	3L_1414663_SNP [dm3] 3L_1414663_SNP [dm6]	A	G	1.253e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14334357	3L_14334357_SNP [dm3] 3L_14341257_SNP [dm6]	T	G	1.256e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6817032	2L_6817032_SNP [dm3] 2L_6817032_SNP [dm6]	G	C	1.257e^-4	1	INTERGENIC
3L	13981060	3L_13981060_SNP [dm3] 3L_13987960_SNP [dm6]	T	G	1.262e^-4	1	NON_SYNONYMOUS_CODING CG9040 DOWNSTREAM CG17362 INTRON CG17364
2R	12630427	2R_12630427_SNP [dm3] 2R_16742922_SNP [dm6]	A	T	1.274e^-4	1	INTERGENIC
X	10277741	X_10277741_INS [dm3] X_10383708_INS [dm6]	T	TGTAT	1.275e^-4	1	UTR_3_PRIME Psf3 DOWNSTREAM Psf3 & 1 other
X	10279483	X_10279483_SNP [dm3] X_10385450_SNP [dm6]	C	A	1.287e^-4	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14138272	2R_14138272_SNP [dm3] 2R_18250767_SNP [dm6]	T	A	1.289e^-4	1	INTERGENIC
X	21091206	X_21091206_SNP [dm3] X_21220179_SNP [dm6]	G	A	1.297e^-4	1	INTRON CG32521
2L	2841205	2L_2841205_SNP [dm3] 2L_2841205_SNP [dm6]	A	G	1.302e^-4	1	NON_SYNONYMOUS_CODING CG2975 UPSTREAM CR45342
2L	11314131	2L_11314131_SNP [dm3] 2L_11314131_SNP [dm6]	A	G	1.304e^-4	1	INTERGENIC
2L	4075944	2L_4075944_SNP [dm3] 2L_4075944_SNP [dm6]	G	A	1.312e^-4	1	INTRON ed EXON CR44984
X	10279586	X_10279586_SNP [dm3] X_10385553_SNP [dm6]	G	C	1.313e^-4	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	21821297	3L_21821297_INS [dm3] 3L_21828197_INS [dm6]	T	TCGAATTTATT...	1.318e^-4	1	UTR_5_PRIME CG32448 UPSTREAM CG32448 DOWNSTREAM CG7414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17323850	X_17323850_SNP [dm3] X_17429817_SNP [dm6]	C	T	1.338e^-4	1	INTRON CG12994
2L	4935116	2L_4935116_SNP [dm3] 2L_4935116_SNP [dm6]	T	C	1.344e^-4	1	NON_SYNONYMOUS_CODING hoe2
3L	4636935	3L_4636935_SNP [dm3] 3L_4636935_SNP [dm6]	C	G	1.347e^-4	1	UTR_3_PRIME axo INTRON axo
2R	9264032	2R_9264032_DEL [dm3] 2R_13376527_DEL [dm6]	TG	T	1.349e^-4	1	INTRON CG10814	TF binding site mE1_TFBS_chinmo
3L	16760469	3L_16760469_SNP [dm3] 3L_16767369_SNP [dm6]	G	A	1.359e^-4	1	INTRON Nrt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8415796	2L_8415796_SNP [dm3] 2L_8415796_SNP [dm6]	G	A	1.361e^-4	1	UTR_5_PRIME Akap200 UPSTREAM CG13398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6617853	2L_6617853_SNP [dm3] 2L_6617853_SNP [dm6]	G	T	1.371e^-4	1	NON_SYNONYMOUS_CODING CG11320 DOWNSTREAM CG11050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4291294	2L_4291294_SNP [dm3] 2L_4291294_SNP [dm6]	C	T	1.382e^-4	1	INTRON tutl
3L	2790464	3L_2790464_SNP [dm3] 3L_2790464_SNP [dm6]	T	G	1.399e^-4	1	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2987347	2L_2987347_SNP [dm3] 2L_2987347_SNP [dm6]	A	T	1.418e^-4	1	UPSTREAM Bem46 INTRON Chd1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15287203	2L_15287203_SNP [dm3] 2L_15287203_SNP [dm6]	T	C	1.426e^-4	1	INTERGENIC
2L	953615	2L_953615_SNP [dm3] 2L_953615_SNP [dm6]	G	T	1.433e^-4	1	INTRON CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14292604	2R_14292604_SNP [dm3] 2R_18405099_SNP [dm6]	C	G	1.460e^-4	1	NON_SYNONYMOUS_CODING GstE5 UPSTREAM GstE6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	6298940	2L_6298940_SNP [dm3] 2L_6298940_SNP [dm6]	A	C	1.460e^-4	1	INTRON Ddr
X	5698584	X_5698584_INS [dm3] X_5804551_INS [dm6]	G	GCTTTTGG	1.470e^-4	1	UPSTREAM Cpr5C INTERGENIC
3L	14096914	3L_14096914_SNP [dm3] 3L_14103814_SNP [dm6]	C	G	1.482e^-4	1	UTR_3_PRIME Sox21a
2R	8387876	2R_8387876_SNP [dm3] 2R_12500371_SNP [dm6]	A	G	1.488e^-4	1	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8883056	3L_8883056_SNP [dm3] 3L_8889956_SNP [dm6]	G	A	1.488e^-4	1	UTR_3_PRIME dally
2L	3240634	2L_3240634_SNP [dm3] 2L_3240634_SNP [dm6]	G	A	1.492e^-4	1	INTERGENIC
3L	14704938	3L_14704938_SNP [dm3] 3L_14711838_SNP [dm6]	A	G	1.494e^-4	1	INTRON ome
X	7602531	X_7602531_SNP [dm3] X_7708498_SNP [dm6]	A	T	1.494e^-4	1	INTRON CHES-1-like & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5701631	X_5701631_SNP [dm3] X_5807598_SNP [dm6]	G	C	1.498e^-4	1	INTERGENIC
2R	8170572	2R_8170572_SNP [dm3] 2R_12283067_SNP [dm6]	C	T	1.503e^-4	1	INTRON CG42700
3L	9974718	3L_9974718_SNP [dm3] 3L_9981618_SNP [dm6]	C	T	1.504e^-4	1	INTRON dpr6
3L	2082929	3L_2082929_SNP [dm3] 3L_2082929_SNP [dm6]	T	G	1.510e^-4	1	SYNONYMOUS_CODING sls INTRON sls
3L	13559897	3L_13559897_SNP [dm3] 3L_13566797_SNP [dm6]	C	T	1.512e^-4	1	INTRON bru-3
3L	17257477	3L_17257477_SNP [dm3] 3L_17264377_SNP [dm6]	T	C	1.513e^-4	1	UPSTREAM CG13723 DOWNSTREAM CR43870 INTERGENIC
X	7056349	X_7056349_SNP [dm3] X_7162316_SNP [dm6]	T	A	1.534e^-4	1	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	7501404	X_7501404_SNP [dm3] X_7607371_SNP [dm6]	A	T	1.542e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
3L	17685170	3L_17685170_SNP [dm3] 3L_17692070_SNP [dm6]	C	A	1.554e^-4	1	INTRON Ccn
2L	20835619	2L_20835619_DEL [dm3] 2L_20835619_DEL [dm6]	CAATAT	C	1.558e^-4	1	UTR_5_PRIME Oseg5 DOWNSTREAM Spn38F	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	13587129	2L_13587129_SNP [dm3] 2L_13587129_SNP [dm6]	A	G	1.566e^-4	1	INTRON kuz
2R	18016506	2R_18016506_SNP [dm3] 2R_22129001_SNP [dm6]	G	T	1.574e^-4	1	SYNONYMOUS_CODING NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	19462185	3R_19462185_SNP [dm3] 3R_23636463_SNP [dm6]	A	G	1.574e^-4	1	INTRON CG31145
2L	9517531	2L_9517531_SNP [dm3] 2L_9517531_SNP [dm6]	G	C	1.578e^-4	1	NON_SYNONYMOUS_CODING CG33298 SPLICE_SITE_REGION CG33298
2R	10551868	2R_10551868_INS [dm3] 2R_14664363_INS [dm6]	G	GCACCCAATGG...	1.578e^-4	1	UTR_3_PRIME CG12861
2L	13148294	2L_13148294_SNP [dm3] 2L_13148294_SNP [dm6]	A	T	1.578e^-4	1	INTERGENIC
2L	18615843	2L_18615843_SNP [dm3] 2L_18615843_SNP [dm6]	C	T	1.582e^-4	1	UTR_5_PRIME CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12133241	X_12133241_SNP [dm3] X_12239208_SNP [dm6]	C	A	1.582e^-4	1	INTRON Ten-a
3L	5976923	3L_5976923_SNP [dm3] 3L_5983823_SNP [dm6]	C	T	1.586e^-4	1	DOWNSTREAM CR45440 EXON CR45439	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5864794	3R_5864794_SNP [dm3] 3R_10039072_SNP [dm6]	G	A	1.594e^-4	1	INTRON Mical
3L	1419647	3L_1419647_SNP [dm3] 3L_1419647_SNP [dm6]	T	A	1.594e^-4	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16647411	3L_16647411_INS [dm3] 3L_16654311_INS [dm6]	A	TCG	1.608e^-4	1	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
3L	14251969	3L_14251969_SNP [dm3] 3L_14258869_SNP [dm6]	G	A	1.617e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18337424	2R_18337424_SNP [dm3] 2R_22449919_SNP [dm6]	C	G	1.619e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	18611546	2L_18611546_SNP [dm3] 2L_18611546_SNP [dm6]	G	A	1.621e^-4	1	INTRON Atac2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20025488	2L_20025488_SNP [dm3] 2L_20025488_SNP [dm6]	C	T	1.622e^-4	1	SYNONYMOUS_CODING CG10659
X	15813500	X_15813500_SNP [dm3] X_15919467_SNP [dm6]	A	T	1.627e^-4	1	INTRON CG8909
2L	20250625	2L_20250625_SNP [dm3] 2L_20250625_SNP [dm6]	T	C	1.641e^-4	1	UPSTREAM CR40172 INTERGENIC
2L	12925293	2L_12925293_SNP [dm3] 2L_12925293_SNP [dm6]	T	A	1.648e^-4	1	UTR_3_PRIME ACXA UPSTREAM ACXE
2R	6340048	2R_6340048_SNP [dm3] 2R_10452543_SNP [dm6]	C	G	1.650e^-4	1	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
3L	2479240	3L_2479240_SNP [dm3] 3L_2479240_SNP [dm6]	C	T	1.654e^-4	1	UPSTREAM Cyp4d20 INTRON CG45186
X	11275354	X_11275354_SNP [dm3] X_11381321_SNP [dm6]	A	G	1.659e^-4	1	INTRON dlg1
X	8618271	X_8618271_SNP [dm3] X_8724238_SNP [dm6]	T	A	1.661e^-4	1	UPSTREAM CR43297 INTERGENIC
2L	11326649	2L_11326649_SNP [dm3] 2L_11326649_SNP [dm6]	T	C	1.662e^-4	1	INTERGENIC
3R	5683338	3R_5683338_SNP [dm3] 3R_9857616_SNP [dm6]	G	T	1.664e^-4	1	INTRON Teh1
2L	12053878	2L_12053878_SNP [dm3] 2L_12053878_SNP [dm6]	T	C	1.664e^-4	1	SYNONYMOUS_CODING JhI-21
2R	11606888	2R_11606888_SNP [dm3] 2R_15719383_SNP [dm6]	G	A	1.669e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2180929	3L_2180929_INS [dm3] 3L_2180929_INS [dm6]	T	TATGCTGAAAGCTCT...	1.675e^-4	1	INTERGENIC
3L	14097210	3L_14097210_SNP [dm3] 3L_14104110_SNP [dm6]	C	A	1.691e^-4	1	UTR_3_PRIME Sox21a	TF binding site mE1_TFBS_cad
2R	11640391	2R_11640391_SNP [dm3] 2R_15752886_SNP [dm6]	A	C	1.697e^-4	1	INTRON CG30089
2R	9264253	2R_9264253_SNP [dm3] 2R_13376748_SNP [dm6]	C	T	1.699e^-4	1	INTRON CG10814	TF binding site mE1_TFBS_chinmo
3L	14177958	3L_14177958_SNP [dm3] 3L_14184858_SNP [dm6]	T	C	1.704e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16647416	3L_16647416_DEL [dm3] 3L_16654316_DEL [dm6]	CGA	T	1.706e^-4	1	DOWNSTREAM snRNA:U12:73B INTRON Baldspot
2L	13611018	2L_13611018_INS [dm3] 2L_13611018_INS [dm6]	T	TT	1.707e^-4	1	DOWNSTREAM mir-2489 INTRON kuz
2L	3235687	2L_3235687_SNP [dm3] 2L_3235687_SNP [dm6]	A	G	1.713e^-4	1	INTERGENIC
2R	10815571	2R_10815571_SNP [dm3] 2R_14928066_SNP [dm6]	A	T	1.718e^-4	1	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	16733903	3L_16733903_SNP [dm3] 3L_16740803_SNP [dm6]	T	C	1.722e^-4	1	INTERGENIC
3L	16733907	3L_16733907_SNP [dm3] 3L_16740807_SNP [dm6]	G	C	1.722e^-4	1	INTERGENIC
3L	14097199	3L_14097199_SNP [dm3] 3L_14104099_SNP [dm6]	T	A	1.727e^-4	1	UTR_3_PRIME Sox21a	TF binding site mE1_TFBS_cad
3R	17392050	3R_17392050_SNP [dm3] 3R_21566328_SNP [dm6]	A	G	1.728e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8126432	3R_8126432_SNP [dm3] 3R_12300710_SNP [dm6]	C	A	1.735e^-4	1	INTRON svp	TF binding site mE1_TFBS_cad
2L	6817052	2L_6817052_DEL [dm3] 2L_6817052_DEL [dm6]	TT	C	1.739e^-4	1	INTERGENIC
2R	20346123	2R_20346123_SNP [dm3] 2R_24458600_SNP [dm6]	A	C	1.744e^-4	1	INTRON CG13579	TF binding site mE1_TFBS_chinmo
2L	12924359	2L_12924359_SNP [dm3] 2L_12924359_SNP [dm6]	G	C	1.747e^-4	1	NON_SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
2L	10892936	2L_10892936_SNP [dm3] 2L_10892936_SNP [dm6]	A	C	1.747e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_sens
X	16670588	X_16670588_SNP [dm3] X_16776555_SNP [dm6]	G	A	1.749e^-4	1	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9970786	3L_9970786_DEL [dm3] 3L_9977686_DEL [dm6]	CCAAC	C	1.753e^-4	1	INTRON dpr6
X	8725604	X_8725604_SNP [dm3] X_8831571_SNP [dm6]	T	G	1.770e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18047972	X_18047972_SNP [dm3] X_18153939_SNP [dm6]	A	T	1.773e^-4	1	INTERGENIC
3L	3530977	3L_3530977_SNP [dm3] 3L_3530977_SNP [dm6]	T	A	1.779e^-4	1	INTRON Eip63E
3L	5640919	3L_5640919_SNP [dm3] 3L_5647819_SNP [dm6]	G	C	1.779e^-4	1	SYNONYMOUS_CODING Blimp-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7068503	2L_7068503_SNP [dm3] 2L_7068503_SNP [dm6]	G	T	1.786e^-4	1	NON_SYNONYMOUS_CODING CG11289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8870318	2R_8870318_SNP [dm3] 2R_12982813_SNP [dm6]	C	T	1.791e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18834923	3L_18834923_SNP [dm3] 3L_18841823_SNP [dm6]	C	T	1.792e^-4	1	UPSTREAM Indy INTRON Indy EXON CR32027	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14097021	3L_14097021_SNP [dm3] 3L_14103921_SNP [dm6]	A	G	1.803e^-4	1	UTR_3_PRIME Sox21a
3R	23388959	3R_23388959_SNP [dm3] 3R_27563237_SNP [dm6]	A	G	1.823e^-4	1	UTR_3_PRIME wdb
2R	12989452	2R_12989452_SNP [dm3] 2R_17101947_SNP [dm6]	C	T	1.829e^-4	1	INTRON CG30456
2L	4282404	2L_4282404_SNP [dm3] 2L_4282404_SNP [dm6]	C	T	1.838e^-4	1	UPSTREAM tutl INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	1419602	3L_1419602_SNP [dm3] 3L_1419602_SNP [dm6]	A	G	1.848e^-4	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11275518	X_11275518_SNP [dm3] X_11381485_SNP [dm6]	T	A	1.860e^-4	1	INTRON dlg1
X	11275519	X_11275519_SNP [dm3] X_11381486_SNP [dm6]	T	A	1.860e^-4	1	INTRON dlg1
3L	6612687	3L_6612687_SNP [dm3] 3L_6619587_SNP [dm6]	T	A	1.878e^-4	1	DOWNSTREAM CG8398 INTERGENIC
3L	13559931	3L_13559931_SNP [dm3] 3L_13566831_SNP [dm6]	G	A	1.880e^-4	1	INTRON bru-3
3R	20826362	3R_20826362_SNP [dm3] 3R_25000640_SNP [dm6]	G	A	1.881e^-4	1	INTRON tnc	TF binding site BDTNP1_TFBS_da
2R	6509113	2R_6509113_SNP [dm3] 2R_10621608_SNP [dm6]	C	T	1.897e^-4	1	UPSTREAM CG11883 INTRON CG11883
2L	16031859	2L_16031859_DEL [dm3] 2L_16031859_DEL [dm6]	AA	A	1.898e^-4	1	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
3L	1419578	3L_1419578_SNP [dm3] 3L_1419578_SNP [dm6]	T	A	1.915e^-4	1	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20635473	2R_20635473_SNP [dm3] 2R_24747950_SNP [dm6]	T	A	1.935e^-4	1	INTRON CG30421
2R	18377505	2R_18377505_SNP [dm3] 2R_22490000_SNP [dm6]	T	A	1.946e^-4	1	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7499980	X_7499980_SNP [dm3] X_7605947_SNP [dm6]	C	G	1.967e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	843402	3L_843402_SNP [dm3] 3L_843402_SNP [dm6]	G	C	1.989e^-4	1	SYNONYMOUS_CODING Gr61a UTR_3_PRIME Gr61a UPSTREAM CG13889
2L	16031780	2L_16031780_SNP [dm3] 2L_16031780_SNP [dm6]	A	C	1.995e^-4	1	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
2R	19993383	2R_19993383_SNP [dm3] 2R_24105860_SNP [dm6]	C	T	1.996e^-4	1	NON_SYNONYMOUS_CODING enok	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20000555	3L_20000555_SNP [dm3] 3L_20007455_SNP [dm6]	A	T	2.010e^-4	1	INTRON kug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_zfh1
3L	16182239	3L_16182239_SNP [dm3] 3L_16189139_SNP [dm6]	C	G	2.011e^-4	1	INTERGENIC
2R	7291497	2R_7291497_SNP [dm3] 2R_11403992_SNP [dm6]	T	C	2.014e^-4	1	UPSTREAM tRNA:CR45106 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16595465	2L_16595465_SNP [dm3] 2L_16595465_SNP [dm6]	G	A	2.018e^-4	1	INTRON CG42389
3L	16733896	3L_16733896_SNP [dm3] 3L_16740796_SNP [dm6]	T	A	2.023e^-4	1	INTERGENIC
2L	10031731	2L_10031731_SNP [dm3] 2L_10031731_SNP [dm6]	C	G	2.034e^-4	1	UPSTREAM obst-B INTERGENIC
X	11374847	X_11374847_SNP [dm3] X_11480814_SNP [dm6]	T	G	2.035e^-4	1	INTRON Cyp4g15
3R	8372552	3R_8372552_SNP [dm3] 3R_12546830_SNP [dm6]	A	T	2.040e^-4	1	INTRON Octbeta3R	TF binding site mE1_TFBS_sbb
X	9023539	X_9023539_SNP [dm3] X_9129506_SNP [dm6]	C	A	2.040e^-4	1	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4050995	X_4050995_SNP [dm3] X_4156962_SNP [dm6]	C	T	2.040e^-4	1	INTRON Fas2
X	13010424	X_13010424_SNP [dm3] X_13116391_SNP [dm6]	A	T	2.045e^-4	1	INTRON CG42237
2L	4292585	2L_4292585_SNP [dm3] 2L_4292585_SNP [dm6]	C	T	2.047e^-4	1	INTRON tutl	TF binding site mE1_TFBS_chinmo
X	8725563	X_8725563_INS [dm3] X_8831530_INS [dm6]	C	CAGATGATTAATAGCTCAAC...	2.048e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4711260	2L_4711260_SNP [dm3] 2L_4711260_SNP [dm6]	A	C	2.058e^-4	1	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22242149	X_22242149_SNP [dm3] X_22840313_SNP [dm6]	A	T	2.067e^-4	1	INTRON fog & 1 other
3R	12234993	3R_12234993_SNP [dm3] 3R_16409271_SNP [dm6]	G	A	2.082e^-4	1	INTERGENIC
3L	7832197	3L_7832197_SNP [dm3] 3L_7839097_SNP [dm6]	G	A	2.082e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
X	4858282	X_4858282_SNP [dm3] X_4964249_SNP [dm6]	C	T	2.094e^-4	1	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4296190	2L_4296190_SNP [dm3] 2L_4296190_SNP [dm6]	A	G	2.100e^-4	1	INTRON tutl
3L	1277260	3L_1277260_SNP [dm3] 3L_1277260_SNP [dm6]	A	T	2.101e^-4	1	INTRON CG32333
2R	9682601	2R_9682601_SNP [dm3] 2R_13795096_SNP [dm6]	C	T	2.103e^-4	1	INTRON Cpr50Cb
X	8576231	X_8576231_SNP [dm3] X_8682198_SNP [dm6]	T	C	2.111e^-4	1	INTRON CG11284	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26781611	3R_26781611_SNP [dm3] 3R_30955889_SNP [dm6]	G	T	2.132e^-4	1	INTERGENIC
2L	3061653	2L_3061653_SNP [dm3] 2L_3061653_SNP [dm6]	C	T	2.136e^-4	1	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_chinmo
X	7263807	X_7263807_SNP [dm3] X_7369774_SNP [dm6]	C	G	2.137e^-4	1	INTRON CG1677 & 1 other
2R	10587575	2R_10587575_SNP [dm3] 2R_14700070_SNP [dm6]	C	A	2.139e^-4	1	INTRON mspo
X	16464225	X_16464225_SNP [dm3] X_16570192_SNP [dm6]	A	G	2.154e^-4	1	UPSTREAM CanA-14F INTRON CanA-14F
3R	12930238	3R_12930238_SNP [dm3] 3R_17104516_SNP [dm6]	C	A	2.155e^-4	1	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	1273740	3L_1273740_SNP [dm3] 3L_1273740_SNP [dm6]	C	T	2.157e^-4	1	INTRON CG9134	TF binding site mE1_TFBS_chinmo
2R	13335405	2R_13335405_SNP [dm3] 2R_17447900_SNP [dm6]	C	A	2.167e^-4	1	UPSTREAM mthl4 DOWNSTREAM mthl3 INTERGENIC
2R	10815075	2R_10815075_SNP [dm3] 2R_14927570_SNP [dm6]	G	T	2.174e^-4	1	INTRON CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14359259	2L_14359259_SNP [dm3] 2L_14359259_SNP [dm6]	G	A	2.179e^-4	1	UTR_5_PRIME Pgant35A DOWNSTREAM CR43463 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	8576152	X_8576152_SNP [dm3] X_8682119_SNP [dm6]	C	A	2.184e^-4	1	INTRON CG11284	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6314485	3L_6314485_SNP [dm3] 3L_6321385_SNP [dm6]	T	C	2.192e^-4	1	SYNONYMOUS_CODING Or65a
2L	6244696	2L_6244696_SNP [dm3] 2L_6244696_SNP [dm6]	C	G	2.200e^-4	1	INTERGENIC
3L	5349640	3L_5349640_SNP [dm3] 3L_5356540_SNP [dm6]	T	A	2.202e^-4	1	UPSTREAM lama DOWNSTREAM tRNA:CR32421 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	6335400	X_6335400_SNP [dm3] X_6441367_SNP [dm6]	C	A	2.206e^-4	1	INTRON CG42340
2L	7472340	2L_7472340_SNP [dm3] 2L_7472340_SNP [dm6]	A	G	2.213e^-4	1	UTR_3_PRIME CG6055 DOWNSTREAM Ziz
X	15270457	X_15270457_SNP [dm3] X_15376424_SNP [dm6]	T	C	2.218e^-4	1	INTRON acj6
2L	6817027	2L_6817027_SNP [dm3] 2L_6817027_SNP [dm6]	A	G	2.221e^-4	1	INTERGENIC
2R	9979021	2R_9979021_SNP [dm3] 2R_14091516_SNP [dm6]	C	T	2.221e^-4	1	SYNONYMOUS_CODING CG42288 DOWNSTREAM CG42287 INTRON Prosap
3L	13559779	3L_13559779_SNP [dm3] 3L_13566679_SNP [dm6]	T	G	2.223e^-4	1	INTRON bru-3
2R	9808191	2R_9808191_SNP [dm3] 2R_13920686_SNP [dm6]	C	T	2.238e^-4	1	INTRON shot
2L	18615686	2L_18615686_SNP [dm3] 2L_18615686_SNP [dm6]	A	C	2.239e^-4	1	NON_SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18325308	2L_18325308_SNP [dm3] 2L_18325308_SNP [dm6]	G	T	2.266e^-4	1	INTRON Fas3
3L	18591638	3L_18591638_DEL [dm3] 3L_18598538_DEL [dm6]	TAATGTTAACGT...	T	2.268e^-4	1	DOWNSTREAM CR45390 INTERGENIC
3R	20919820	3R_20919820_SNP [dm3] 3R_25094098_SNP [dm6]	G	C	2.272e^-4	1	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	20635525	2R_20635525_SNP [dm3] 2R_24748002_SNP [dm6]	T	C	2.275e^-4	1	INTRON CG30421
3L	14334356	3L_14334356_SNP [dm3] 3L_14341256_SNP [dm6]	G	A	2.283e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15459090	3L_15459090_SNP [dm3] 3L_15465990_SNP [dm6]	G	A	2.286e^-4	1	INTERGENIC
3L	15298335	3L_15298335_SNP [dm3] 3L_15305235_SNP [dm6]	C	T	2.287e^-4	1	UPSTREAM CG7255 INTRON CG7255	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4232101	2L_4232101_DEL [dm3] 2L_4232101_DEL [dm6]	AATATTAA	T	2.291e^-4	1	INTERGENIC
2L	4232224	2L_4232224_SNP [dm3] 2L_4232224_SNP [dm6]	G	A	2.291e^-4	1	INTERGENIC
2L	4232569	2L_4232569_SNP [dm3] 2L_4232569_SNP [dm6]	G	A	2.291e^-4	1	INTERGENIC
2R	11758821	2R_11758821_SNP [dm3] 2R_15871316_SNP [dm6]	C	A	2.295e^-4	1	UTR_3_PRIME sli	TF binding site mE1_TFBS_cad
3R	5221461	3R_5221461_SNP [dm3] 3R_9395739_SNP [dm6]	T	C	2.300e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	4286022	3L_4286022_SNP [dm3] 3L_4286022_SNP [dm6]	C	A	2.301e^-4	1	INTRON CG1316
X	22188601	X_22188601_INS [dm3] X_22786765_INS [dm6]	T	TT	2.309e^-4	1	INTRON CR44997
2R	20636427	2R_20636427_SNP [dm3] 2R_24748904_SNP [dm6]	T	A	2.310e^-4	1	INTRON CG30421
3L	14096442	3L_14096442_SNP [dm3] 3L_14103342_SNP [dm6]	C	G	2.318e^-4	1	DOWNSTREAM Sox21a INTERGENIC
2R	9852600	2R_9852600_SNP [dm3] 2R_13965095_SNP [dm6]	T	A	2.333e^-4	1	NON_SYNONYMOUS_CODING CG42806 UPSTREAM Cp1 INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	19292289	3R_19292289_SNP [dm3] 3R_23466567_SNP [dm6]	C	T	2.337e^-4	1	INTRON CG4374
3L	6612689	3L_6612689_DEL [dm3] 3L_6619589_DEL [dm6]	GCTGC	G	2.337e^-4	1	DOWNSTREAM CG8398 INTERGENIC
3R	15512034	3R_15512034_SNP [dm3] 3R_19686312_SNP [dm6]	C	A	2.341e^-4	1	UPSTREAM Naam INTRON Naam
2R	5116904	2R_5116904_SNP [dm3] 2R_9229399_SNP [dm6]	A	T	2.347e^-4	1	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20000596	3L_20000596_SNP [dm3] 3L_20007496_SNP [dm6]	A	G	2.360e^-4	1	INTRON kug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	13853615	2R_13853615_SNP [dm3] 2R_17966110_SNP [dm6]	C	G	2.367e^-4	1	INTERGENIC
2L	18615659	2L_18615659_SNP [dm3] 2L_18615659_SNP [dm6]	G	C	2.380e^-4	1	NON_SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20853780	3R_20853780_SNP [dm3] 3R_25028058_SNP [dm6]	C	A	2.383e^-4	1	INTRON Hr96
3R	20853779	3R_20853779_SNP [dm3] 3R_25028057_SNP [dm6]	T	C	2.407e^-4	1	INTRON Hr96
3L	14051109	3L_14051109_SNP [dm3] 3L_14058009_SNP [dm6]	C	A	2.408e^-4	1	INTRON CG32138
3R	25357913	3R_25357913_SNP [dm3] 3R_29532191_SNP [dm6]	C	T	2.411e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18254700	2L_18254700_SNP [dm3] 2L_18254700_SNP [dm6]	G	A	2.418e^-4	1	INTRON CG42750
2L	14708671	2L_14708671_SNP [dm3] 2L_14708671_SNP [dm6]	G	A	2.433e^-4	1	INTERGENIC
2L	5822660	2L_5822660_SNP [dm3] 2L_5822660_SNP [dm6]	A	G	2.439e^-4	1	INTERGENIC
3R	24083525	3R_24083525_SNP [dm3] 3R_28257803_SNP [dm6]	T	C	2.442e^-4	1	INTERGENIC
X	8815616	X_8815616_SNP [dm3] X_8921583_SNP [dm6]	A	G	2.443e^-4	1	INTRON rdgA
3L	11729636	3L_11729636_DEL [dm3] 3L_11736536_DEL [dm6]	TA	C	2.448e^-4	1	UTR_3_PRIME CG6024
2R	8429759	2R_8429759_SNP [dm3] 2R_12542254_SNP [dm6]	G	A	2.453e^-4	1	INTRON fra
3L	13980447	3L_13980447_SNP [dm3] 3L_13987347_SNP [dm6]	T	G	2.457e^-4	1	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2L	4232159	2L_4232159_SNP [dm3] 2L_4232159_SNP [dm6]	T	A	2.471e^-4	1	INTERGENIC
2L	10424482	2L_10424482_SNP [dm3] 2L_10424482_SNP [dm6]	G	A	2.472e^-4	1	SPLICE_SITE_REGION CG5168 SYNONYMOUS_CODING CG5168
2R	12832704	2R_12832704_SNP [dm3] 2R_16945199_SNP [dm6]	A	C	2.474e^-4	1	UPSTREAM CG15614 DOWNSTREAM Pkc53E INTERGENIC
2L	3233453	2L_3233453_SNP [dm3] 2L_3233453_SNP [dm6]	C	A	2.476e^-4	1	INTERGENIC
2R	19508715	2R_19508715_SNP [dm3] 2R_23621192_SNP [dm6]	C	T	2.480e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15086661	X_15086661_SNP [dm3] X_15192628_SNP [dm6]	G	A	2.484e^-4	1	INTERGENIC
3L	7325986	3L_7325986_SNP [dm3] 3L_7332886_SNP [dm6]	G	A	2.489e^-4	1	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other	TF binding site mE1_TFBS_sens
2L	14057507	2L_14057507_INS [dm3] 2L_14057507_INS [dm6]	T	TGCCT	2.492e^-4	1	INTRON nAChRalpha5
3L	2433474	3L_2433474_SNP [dm3] 3L_2433474_SNP [dm6]	C	T	2.494e^-4	1	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9009321	3L_9009321_SNP [dm3] 3L_9016221_SNP [dm6]	A	G	2.498e^-4	1	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	13674597	X_13674597_SNP [dm3] X_13780564_SNP [dm6]	C	T	2.500e^-4	1	SYNONYMOUS_CODING CtsB1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	20025445	2L_20025445_SNP [dm3] 2L_20025445_SNP [dm6]	G	A	2.504e^-4	1	SYNONYMOUS_CODING CG10659	transposable element FlyBase
2R	8877589	2R_8877589_SNP [dm3] 2R_12990084_SNP [dm6]	T	A	2.504e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn
2R	6294770	2R_6294770_SNP [dm3] 2R_10407265_SNP [dm6]	T	G	2.505e^-4	1	SYNONYMOUS_CODING CG12898 INTRON CG42732
X	12204320	X_12204320_SNP [dm3] X_12310287_SNP [dm6]	C	T	2.508e^-4	1	INTRON Ten-a
2L	19963585	2L_19963585_SNP [dm3] 2L_19963585_SNP [dm6]	G	A	2.511e^-4	1	NON_SYNONYMOUS_CODING CG16772 UPSTREAM CG10680 DOWNSTREAM CR45701
2L	12910978	2L_12910978_SNP [dm3] 2L_12910978_SNP [dm6]	C	T	2.514e^-4	1	INTERGENIC
2R	8170581	2R_8170581_SNP [dm3] 2R_12283076_SNP [dm6]	T	C	2.517e^-4	1	INTRON CG42700
X	14770089	X_14770089_SNP [dm3] X_14876056_SNP [dm6]	G	T	2.520e^-4	1	SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2	TF binding site mE1_TFBS_sens
3L	4446710	3L_4446710_SNP [dm3] 3L_4446710_SNP [dm6]	T	G	2.521e^-4	1	UPSTREAM CR45739 INTRON CG12607
2L	6274379	2L_6274379_SNP [dm3] 2L_6274379_SNP [dm6]	C	T	2.524e^-4	1	INTRON Ddr
3R	15709360	3R_15709360_SNP [dm3] 3R_19883638_SNP [dm6]	C	T	2.528e^-4	1	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad
2L	18316992	2L_18316992_SNP [dm3] 2L_18316992_SNP [dm6]	C	A	2.533e^-4	1	INTERGENIC
2L	6454867	2L_6454867_SNP [dm3] 2L_6454867_SNP [dm6]	A	T	2.541e^-4	1	INTRON retm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	13800238	X_13800238_SNP [dm3] X_13906205_SNP [dm6]	G	A	2.557e^-4	1	INTRON mamo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7496974	X_7496974_SNP [dm3] X_7602941_SNP [dm6]	G	T	2.560e^-4	1	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr
2R	17805679	2R_17805679_SNP [dm3] 2R_21918174_SNP [dm6]	C	A	2.563e^-4	1	INTRON Fili
2L	10813460	2L_10813460_SNP [dm3] 2L_10813460_SNP [dm6]	G	A	2.564e^-4	1	INTRON Nos
2L	15246507	2L_15246507_SNP [dm3] 2L_15246507_SNP [dm6]	C	T	2.565e^-4	1	UPSTREAM ZnT35C INTRON ZnT35C
2L	6244689	2L_6244689_SNP [dm3] 2L_6244689_SNP [dm6]	C	T	2.565e^-4	1	INTERGENIC
2L	6244700	2L_6244700_SNP [dm3] 2L_6244700_SNP [dm6]	A	C	2.565e^-4	1	INTERGENIC
2L	14359257	2L_14359257_SNP [dm3] 2L_14359257_SNP [dm6]	G	C	2.566e^-4	1	UTR_5_PRIME Pgant35A DOWNSTREAM CR43463 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10545331	2R_10545331_SNP [dm3] 2R_14657826_SNP [dm6]	C	A	2.583e^-4	1	SYNONYMOUS_CODING Adgf-E	TF binding site mE1_TFBS_cad
3R	19615842	3R_19615842_SNP [dm3] 3R_23790120_SNP [dm6]	A	C	2.587e^-4	1	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7602586	X_7602586_SNP [dm3] X_7708553_SNP [dm6]	G	A	2.589e^-4	1	INTRON CHES-1-like EXON CR43287	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4039287	X_4039287_INS [dm3] X_4145254_INS [dm6]	G	GG	2.604e^-4	1	INTRON Fas2
2L	16031878	2L_16031878_SNP [dm3] 2L_16031878_SNP [dm6]	G	C	2.605e^-4	1	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
2L	11213090	2L_11213090_SNP [dm3] 2L_11213090_SNP [dm6]	T	C	2.609e^-4	1	INTRON ab
X	13060061	X_13060061_SNP [dm3] X_13166028_SNP [dm6]	G	A	2.611e^-4	1	INTRON CG34411
2L	20824538	2L_20824538_SNP [dm3] 2L_20824538_SNP [dm6]	A	T	2.611e^-4	1	UTR_5_PRIME CG9331 UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19508637	2R_19508637_INS [dm3] 2R_23621114_INS [dm6]	T	TAAACTTCCCGCCAAGG...	2.635e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17182699	2R_17182699_SNP [dm3] 2R_21295194_SNP [dm6]	A	G	2.643e^-4	1	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	8620446	X_8620446_SNP [dm3] X_8726413_SNP [dm6]	C	T	2.644e^-4	1	DOWNSTREAM CR43297 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11630119	2L_11630119_SNP [dm3] 2L_11630119_SNP [dm6]	A	T	2.645e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24246693	3R_24246693_SNP [dm3] 3R_28420971_SNP [dm6]	T	G	2.648e^-4	1	INTRON beat-VI
X	17578840	X_17578840_SNP [dm3] X_17684807_SNP [dm6]	A	G	2.656e^-4	1	INTRON chas
X	17578843	X_17578843_SNP [dm3] X_17684810_SNP [dm6]	T	C	2.656e^-4	1	INTRON chas
3R	21471525	3R_21471525_SNP [dm3] 3R_25645803_SNP [dm6]	C	T	2.657e^-4	1	UPSTREAM mir-92a INTRON jigr1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24153789	3R_24153789_SNP [dm3] 3R_28328067_SNP [dm6]	T	A	2.663e^-4	1	INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_Trl
3L	18626816	3L_18626816_SNP [dm3] 3L_18633716_SNP [dm6]	A	G	2.668e^-4	1	INTRON MYPT-75D
X	558781	X_558781_SNP [dm3] X_664748_SNP [dm6]	T	C	2.669e^-4	1	INTERGENIC
2R	10538936	2R_10538936_SNP [dm3] 2R_14651431_SNP [dm6]	C	T	2.670e^-4	1	INTERGENIC
2L	11463419	2L_11463419_SNP [dm3] 2L_11463419_SNP [dm6]	G	A	2.672e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14097059	3L_14097059_SNP [dm3] 3L_14103959_SNP [dm6]	C	T	2.677e^-4	1	UTR_3_PRIME Sox21a
X	22186054	X_22186054_SNP [dm3] X_22784218_SNP [dm6]	C	A	2.698e^-4	1	INTRON CR44997
2L	2723556	2L_2723556_SNP [dm3] 2L_2723556_SNP [dm6]	T	C	2.701e^-4	1	INTERGENIC
2L	14006397	2L_14006397_SNP [dm3] 2L_14006397_SNP [dm6]	T	C	2.703e^-4	1	INTERGENIC
X	22187770	X_22187770_INS [dm3] X_22785934_INS [dm6]	A	AT	2.719e^-4	1	INTRON CR44997
2R	14525909	2R_14525909_SNP [dm3] 2R_18638404_SNP [dm6]	T	G	2.744e^-4	1	NON_SYNONYMOUS_CODING CG30122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	9249045	2R_9249045_SNP [dm3] 2R_13361540_SNP [dm6]	A	T	2.746e^-4	1	DOWNSTREAM CR45312 INTERGENIC
2L	18314722	2L_18314722_DEL [dm3] 2L_18314722_DEL [dm6]	GTA	G	2.749e^-4	1	UPSTREAM CR44489 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15668966	X_15668966_SNP [dm3] X_15774933_SNP [dm6]	T	A	2.758e^-4	1	SYNONYMOUS_CODING CG43672
2R	7663403	2R_7663403_SNP [dm3] 2R_11775898_SNP [dm6]	C	T	2.760e^-4	1	INTRON ths
2R	11606349	2R_11606349_SNP [dm3] 2R_15718844_SNP [dm6]	G	A	2.764e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12925364	2L_12925364_SNP [dm3] 2L_12925364_SNP [dm6]	T	A	2.765e^-4	1	UTR_3_PRIME ACXA UPSTREAM ACXE
3L	9868462	3L_9868462_SNP [dm3] 3L_9875362_SNP [dm6]	C	T	2.769e^-4	1	UPSTREAM CR45406 INTERGENIC
3L	7548817	3L_7548817_SNP [dm3] 3L_7555717_SNP [dm6]	T	G	2.771e^-4	1	DOWNSTREAM CG14837 INTERGENIC
X	8959401	X_8959401_SNP [dm3] X_9065368_SNP [dm6]	A	G	2.771e^-4	1	INTRON CG15365	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20411010	3L_20411010_SNP [dm3] 3L_20417910_SNP [dm6]	G	A	2.792e^-4	1	SYNONYMOUS_CODING zye	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18692496	3L_18692496_SNP [dm3] 3L_18699396_SNP [dm6]	A	T	2.792e^-4	1	UPSTREAM Dic4 INTERGENIC
2L	1120114	2L_1120114_SNP [dm3] 2L_1120114_SNP [dm6]	G	T	2.794e^-4	1	INTRON Pino	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18806774	X_18806774_DEL [dm3] X_18912741_DEL [dm6]	GATTAATATG	G	2.795e^-4	1	DOWNSTREAM CG7378 EXON CR44708
3R	16704227	3R_16704227_SNP [dm3] 3R_20878505_SNP [dm6]	T	C	2.799e^-4	1	DOWNSTREAM TotZ EXON CR44048
2R	18998987	2R_18998987_SNP [dm3] 2R_23111464_SNP [dm6]	A	G	2.805e^-4	1	UPSTREAM CR44781 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12925608	2L_12925608_SNP [dm3] 2L_12925608_SNP [dm6]	G	T	2.811e^-4	1	UPSTREAM ACXE DOWNSTREAM ACXA INTERGENIC
X	20589151	X_20589151_SNP [dm3] X_20718124_SNP [dm6]	T	C	2.822e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10544027	2R_10544027_SNP [dm3] 2R_14656522_SNP [dm6]	G	C	2.824e^-4	1	DOWNSTREAM Adgf-E INTERGENIC
3L	12807130	3L_12807130_SNP [dm3] 3L_12814030_SNP [dm6]	T	G	2.825e^-4	1	UPSTREAM CG42588 & 1 other DOWNSTREAM Sap130 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	9852601	2R_9852601_SNP [dm3] 2R_13965096_SNP [dm6]	T	G	2.827e^-4	1	NON_SYNONYMOUS_CODING CG42806 UPSTREAM Cp1 INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	22844563	3L_22844563_SNP [dm3] 3L_22851463_SNP [dm6]	C	A	2.829e^-4	1	UPSTREAM CR43426 DOWNSTREAM CG32462 INTRON CR43426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9722429	2L_9722429_SNP [dm3] 2L_9722429_SNP [dm6]	A	G	2.842e^-4	1	INTRON Nckx30C	TF binding site mE1_TFBS_sens
X	10279831	X_10279831_INS [dm3] X_10385798_INS [dm6]	C	CCCC	2.851e^-4	1	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16031766	2L_16031766_SNP [dm3] 2L_16031766_SNP [dm6]	T	A	2.860e^-4	1	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
2L	13611104	2L_13611104_SNP [dm3] 2L_13611104_SNP [dm6]	A	G	2.861e^-4	1	INTRON kuz
2R	9687799	2R_9687799_SNP [dm3] 2R_13800294_SNP [dm6]	C	G	2.865e^-4	1	INTRON Cpr50Cb
2R	7105012	2R_7105012_SNP [dm3] 2R_11217507_SNP [dm6]	G	A	2.873e^-4	1	DOWNSTREAM shn INTRON CG9084
X	12204003	X_12204003_SNP [dm3] X_12309970_SNP [dm6]	A	G	2.874e^-4	1	INTRON Ten-a
X	11275418	X_11275418_SNP [dm3] X_11381385_SNP [dm6]	G	A	2.878e^-4	1	INTRON dlg1
3L	17671248	3L_17671248_SNP [dm3] 3L_17678148_SNP [dm6]	C	T	2.891e^-4	1	INTRON CG34251
3L	17671297	3L_17671297_SNP [dm3] 3L_17678197_SNP [dm6]	C	T	2.891e^-4	1	INTRON CG34251
3L	17671298	3L_17671298_SNP [dm3] 3L_17678198_SNP [dm6]	T	C	2.891e^-4	1	INTRON CG34251
3L	17671313	3L_17671313_SNP [dm3] 3L_17678213_SNP [dm6]	A	G	2.891e^-4	1	INTRON CG34251
X	20585834	X_20585834_SNP [dm3] X_20714807_SNP [dm6]	T	C	2.895e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20634329	2R_20634329_SNP [dm3] 2R_24746806_SNP [dm6]	G	C	2.906e^-4	1	INTRON CG30421
2L	20267951	2L_20267951_SNP [dm3] 2L_20267951_SNP [dm6]	A	G	2.914e^-4	1	INTERGENIC
X	20797431	X_20797431_DEL [dm3] X_20926404_DEL [dm6]	AA	A	2.916e^-4	1	INTRON shakB	TF binding site BDTNP1_TFBS_dl
2R	18016497	2R_18016497_SNP [dm3] 2R_22128992_SNP [dm6]	C	A	2.917e^-4	1	NON_SYNONYMOUS_CODING NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18016551	2R_18016551_SNP [dm3] 2R_22129046_SNP [dm6]	T	C	2.917e^-4	1	SYNONYMOUS_CODING NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	21916690	3R_21916690_SNP [dm3] 3R_26090968_SNP [dm6]	C	A	2.920e^-4	1	INTRON dys	regulatory region REDfly_CRMs
2L	16894077	2L_16894077_SNP [dm3] 2L_16894077_SNP [dm6]	G	A	2.928e^-4	1	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6803891	2L_6803891_SNP [dm3] 2L_6803891_SNP [dm6]	G	T	2.931e^-4	1	SPLICE_SITE_REGION CG11236 DOWNSTREAM CG17375 INTRON CG11236	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	3060489	2L_3060489_SNP [dm3] 2L_3060489_SNP [dm6]	T	G	2.937e^-4	1	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7607248	X_7607248_SNP [dm3] X_7713215_SNP [dm6]	C	T	2.956e^-4	1	SYNONYMOUS_CODING CG15478	TF binding site mE1_TFBS_chinmo
X	20588003	X_20588003_SNP [dm3] X_20716976_SNP [dm6]	C	T	2.957e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	18290464	2L_18290464_SNP [dm3] 2L_18290464_SNP [dm6]	C	T	2.970e^-4	1	DOWNSTREAM CG43362 EXON CR44696
2L	20984763	2L_20984763_SNP [dm3] 2L_20984763_SNP [dm6]	C	G	2.973e^-4	1	INTRON CG42238
3R	20868795	3R_20868795_SNP [dm3] 3R_25043073_SNP [dm6]	A	G	2.976e^-4	1	INTRON 5PtaseI
3L	15684001	3L_15684001_SNP [dm3] 3L_15690901_SNP [dm6]	G	T	2.978e^-4	1	INTRON CG34451	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	11452049	2L_11452049_SNP [dm3] 2L_11452049_SNP [dm6]	C	A	2.981e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13611022	2L_13611022_SNP [dm3] 2L_13611022_SNP [dm6]	G	A	2.987e^-4	1	DOWNSTREAM mir-2489 INTRON kuz
X	14114457	X_14114457_SNP [dm3] X_14220424_SNP [dm6]	T	G	2.994e^-4	1	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12126719	X_12126719_SNP [dm3] X_12232686_SNP [dm6]	A	G	2.994e^-4	1	INTRON Ten-a
2L	3125038	2L_3125038_SNP [dm3] 2L_3125038_SNP [dm6]	A	G	2.996e^-4	1	INTRON toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9009460	3L_9009460_SNP [dm3] 3L_9016360_SNP [dm6]	G	A	2.996e^-4	1	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	14703610	3L_14703610_SNP [dm3] 3L_14710510_SNP [dm6]	G	T	3.001e^-4	1	INTRON ome
2L	6299233	2L_6299233_SNP [dm3] 2L_6299233_SNP [dm6]	G	A	3.004e^-4	1	INTRON Ddr
3L	22844214	3L_22844214_SNP [dm3] 3L_22851114_SNP [dm6]	C	G	3.025e^-4	1	INTRON CR43426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4598026	3L_4598026_SNP [dm3] 3L_4598026_SNP [dm6]	T	C	3.036e^-4	1	INTRON Src64B
3L	13470026	3L_13470026_SNP [dm3] 3L_13476926_SNP [dm6]	A	T	3.045e^-4	1	UPSTREAM stv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5610486	2R_5610486_SNP [dm3] 2R_9722981_SNP [dm6]	G	T	3.053e^-4	1	INTRON sqa
2L	9343465	2L_9343465_SNP [dm3] 2L_9343465_SNP [dm6]	T	C	3.055e^-4	1	SYNONYMOUS_CODING CG3748
3L	16017260	3L_16017260_SNP [dm3] 3L_16024160_SNP [dm6]	A	G	3.056e^-4	1	INTRON Notum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15093515	2R_15093515_SNP [dm3] 2R_19206010_SNP [dm6]	G	T	3.058e^-4	1	INTRON hppy
3R	23388963	3R_23388963_INS [dm3] 3R_27563241_INS [dm6]	A	ATGA	3.072e^-4	1	UTR_3_PRIME wdb
3L	18692495	3L_18692495_SNP [dm3] 3L_18699395_SNP [dm6]	G	T	3.084e^-4	1	UPSTREAM Dic4 INTERGENIC
X	8577162	X_8577162_SNP [dm3] X_8683129_SNP [dm6]	G	A	3.107e^-4	1	INTRON CG11284	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	20638728	2R_20638728_SNP [dm3] 2R_24751205_SNP [dm6]	A	T	3.110e^-4	1	INTRON CG30421
2L	10031736	2L_10031736_SNP [dm3] 2L_10031736_SNP [dm6]	G	A	3.112e^-4	1	UPSTREAM obst-B INTERGENIC
3R	3649028	3R_3649028_SNP [dm3] 3R_7823306_SNP [dm6]	T	C	3.119e^-4	1	INTRON CG34384
3L	18683953	3L_18683953_SNP [dm3] 3L_18690853_SNP [dm6]	T	G	3.121e^-4	1	INTERGENIC
2R	8430337	2R_8430337_SNP [dm3] 2R_12542832_SNP [dm6]	A	C	3.136e^-4	1	INTRON fra
3L	3641108	3L_3641108_SNP [dm3] 3L_3641108_SNP [dm6]	G	A	3.143e^-4	1	INTRON dar1
2L	2072680	2L_2072680_SNP [dm3] 2L_2072680_SNP [dm6]	A	G	3.146e^-4	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo
3L	13819709	3L_13819709_DEL [dm3] 3L_13826609_DEL [dm6]	TA	C	3.146e^-4	1	INTERGENIC
2R	10544243	2R_10544243_SNP [dm3] 2R_14656738_SNP [dm6]	A	T	3.150e^-4	1	DOWNSTREAM Adgf-E INTERGENIC
2R	10545077	2R_10545077_SNP [dm3] 2R_14657572_SNP [dm6]	A	C	3.150e^-4	1	INTRON Adgf-E
2R	10545081	2R_10545081_DEL [dm3] 2R_14657576_DEL [dm6]	ACAATT	A	3.150e^-4	1	INTRON Adgf-E
2R	10545107	2R_10545107_SNP [dm3] 2R_14657602_SNP [dm6]	T	G	3.150e^-4	1	INTRON Adgf-E
2R	4504195	2R_4504195_SNP [dm3] 2R_8616690_SNP [dm6]	C	A	3.155e^-4	1	INTRON Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7933142	2L_7933142_DEL [dm3] 2L_7933142_DEL [dm6]	ATAGA	A	3.156e^-4	1	INTRON Snoo	TF binding site mE1_TFBS_cad
2R	9577253	2R_9577253_DEL [dm3] 2R_13689748_DEL [dm6]	CC	C	3.161e^-4	1	INTRON fas
2L	5349794	2L_5349794_SNP [dm3] 2L_5349794_SNP [dm6]	A	T	3.163e^-4	1	INTRON nompC
2L	6244697	2L_6244697_SNP [dm3] 2L_6244697_SNP [dm6]	T	A	3.170e^-4	1	INTERGENIC
2R	10552912	2R_10552912_SNP [dm3] 2R_14665407_SNP [dm6]	A	T	3.189e^-4	1	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
2R	10553095	2R_10553095_SNP [dm3] 2R_14665590_SNP [dm6]	A	G	3.189e^-4	1	UPSTREAM CG12861 DOWNSTREAM CG12860 INTERGENIC
3R	24790785	3R_24790785_SNP [dm3] 3R_28965063_SNP [dm6]	C	A	3.202e^-4	1	INTRON CG14521
X	8578315	X_8578315_SNP [dm3] X_8684282_SNP [dm6]	G	T	3.212e^-4	1	INTRON CG11284
3L	2735710	3L_2735710_SNP [dm3] 3L_2735710_SNP [dm6]	T	C	3.235e^-4	1	INTRON Mrtf
2L	5147489	2L_5147489_SNP [dm3] 2L_5147489_SNP [dm6]	G	A	3.245e^-4	1	INTRON Msp300
2L	6800771	2L_6800771_SNP [dm3] 2L_6800771_SNP [dm6]	A	C	3.247e^-4	1	UTR_5_PRIME CG17376 DOWNSTREAM tRNA:CR31631 & 1 other	regulatory region REDfly_CRMs
3L	3005598	3L_3005598_SNP [dm3] 3L_3005598_SNP [dm6]	C	T	3.250e^-4	1	INTRON FMRFaR
2L	11326659	2L_11326659_SNP [dm3] 2L_11326659_SNP [dm6]	T	C	3.252e^-4	1	INTERGENIC
X	16670595	X_16670595_SNP [dm3] X_16776562_SNP [dm6]	T	A	3.255e^-4	1	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22051921	3L_22051921_SNP [dm3] 3L_22058821_SNP [dm6]	C	A	3.257e^-4	1	INTRON Oct-TyrR
2R	18478805	2R_18478805_SNP [dm3] 2R_22591300_SNP [dm6]	C	T	3.258e^-4	1	INTRON dnr1
2L	3022551	2L_3022551_SNP [dm3] 2L_3022551_SNP [dm6]	A	C	3.260e^-4	1	NON_SYNONYMOUS_CODING alpha4GT1 UPSTREAM CG3542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	15160875	2L_15160875_SNP [dm3] 2L_15160875_SNP [dm6]	C	G	3.268e^-4	1	UPSTREAM CR44771 EXON CR44770
3L	6612681	3L_6612681_DEL [dm3] 3L_6619581_DEL [dm6]	ATCGT	A	3.269e^-4	1	DOWNSTREAM CG8398 INTERGENIC
X	10735409	X_10735409_SNP [dm3] X_10841376_SNP [dm6]	G	T	3.273e^-4	1	UPSTREAM CG15209 INTRON sbr	TF binding site BDTNP1_TFBS_twi
3L	15188827	3L_15188827_SNP [dm3] 3L_15195727_SNP [dm6]	A	C	3.274e^-4	1	INTERGENIC
2L	13611240	2L_13611240_SNP [dm3] 2L_13611240_SNP [dm6]	A	G	3.278e^-4	1	INTRON kuz
2R	20633874	2R_20633874_SNP [dm3] 2R_24746351_SNP [dm6]	G	T	3.297e^-4	1	INTRON CG30421
2R	8388419	2R_8388419_SNP [dm3] 2R_12500914_SNP [dm6]	G	A	3.302e^-4	1	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad
2R	6642382	2R_6642382_SNP [dm3] 2R_10754877_SNP [dm6]	A	C	3.303e^-4	1	INTRON CG33144	TF binding site mE1_TFBS_chinmo
3R	5865634	3R_5865634_SNP [dm3] 3R_10039912_SNP [dm6]	G	A	3.304e^-4	1	INTRON Mical
X	4146584	X_4146584_SNP [dm3] X_4252551_SNP [dm6]	G	C	3.308e^-4	1	NON_SYNONYMOUS_CODING CG15576
3R	9959171	3R_9959171_INS [dm3] 3R_14133449_INS [dm6]	A	AA	3.316e^-4	1	INTERGENIC
X	17578833	X_17578833_SNP [dm3] X_17684800_SNP [dm6]	T	A	3.324e^-4	1	INTRON chas
2L	14359211	2L_14359211_SNP [dm3] 2L_14359211_SNP [dm6]	T	C	3.324e^-4	1	UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18325403	2L_18325403_SNP [dm3] 2L_18325403_SNP [dm6]	G	A	3.325e^-4	1	INTRON Fas3
2L	11630118	2L_11630118_SNP [dm3] 2L_11630118_SNP [dm6]	C	A	3.339e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5491132	3L_5491132_SNP [dm3] 3L_5498032_SNP [dm6]	C	T	3.361e^-4	1	NON_SYNONYMOUS_CODING blanks
3L	5491144	3L_5491144_SNP [dm3] 3L_5498044_SNP [dm6]	G	A	3.361e^-4	1	NON_SYNONYMOUS_CODING blanks
2L	12930632	2L_12930632_INS [dm3] 2L_12930632_INS [dm6]	A	ACAATTGTA	3.367e^-4	1	UPSTREAM CR44183 DOWNSTREAM ACXE INTERGENIC
2R	13529783	2R_13529783_SNP [dm3] 2R_17642278_SNP [dm6]	G	A	3.371e^-4	1	INTERGENIC
3L	5582780	3L_5582780_SNP [dm3] 3L_5589680_SNP [dm6]	C	G	3.386e^-4	1	NON_SYNONYMOUS_CODING l_3_psg2 DOWNSTREAM spo
2L	16385086	2L_16385086_SNP [dm3] 2L_16385086_SNP [dm6]	C	T	3.401e^-4	1	INTERGENIC
2L	13611024	2L_13611024_SNP [dm3] 2L_13611024_SNP [dm6]	A	G	3.403e^-4	1	DOWNSTREAM mir-2489 INTRON kuz
X	11275404	X_11275404_SNP [dm3] X_11381371_SNP [dm6]	T	G	3.414e^-4	1	INTRON dlg1
X	12990029	X_12990029_SNP [dm3] X_13095996_SNP [dm6]	G	C	3.415e^-4	1	UTR_3_PRIME CG43313 DOWNSTREAM CG43313 & 1 other
2R	9264244	2R_9264244_SNP [dm3] 2R_13376739_SNP [dm6]	A	G	3.436e^-4	1	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264268	2R_9264268_SNP [dm3] 2R_13376763_SNP [dm6]	C	T	3.436e^-4	1	INTRON CG10814	TF binding site mE1_TFBS_chinmo
3R	3751345	3R_3751345_SNP [dm3] 3R_7925623_SNP [dm6]	A	C	3.437e^-4	1	INTRON dsx
3L	16727010	3L_16727010_SNP [dm3] 3L_16733910_SNP [dm6]	G	A	3.439e^-4	1	INTRON CG9701
2R	7607411	2R_7607411_SNP [dm3] 2R_11719906_SNP [dm6]	A	G	3.445e^-4	1	INTRON pyr
2L	2843354	2L_2843354_SNP [dm3] 2L_2843354_SNP [dm6]	C	T	3.448e^-4	1	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
3L	7885623	3L_7885623_DEL [dm3] 3L_7892523_DEL [dm6]	CAC	C	3.449e^-4	1	INTRON CG32365
X	14770416	X_14770416_SNP [dm3] X_14876383_SNP [dm6]	G	A	3.452e^-4	1	SYNONYMOUS_CODING CG45065 UTR_3_PRIME CG45064 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10495320	3R_10495320_SNP [dm3] 3R_14669598_SNP [dm6]	G	A	3.454e^-4	1	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9979088	2R_9979088_SNP [dm3] 2R_14091583_SNP [dm6]	C	G	3.462e^-4	1	DOWNSTREAM CG42287 INTRON Prosap & 1 other
X	11275550	X_11275550_SNP [dm3] X_11381517_SNP [dm6]	C	T	3.469e^-4	1	INTRON dlg1
2R	12583221	2R_12583221_SNP [dm3] 2R_16695716_SNP [dm6]	C	T	3.474e^-4	1	INTRON CG30463
3R	8388781	3R_8388781_SNP [dm3] 3R_12563059_SNP [dm6]	A	G	3.481e^-4	1	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
X	11275548	X_11275548_SNP [dm3] X_11381515_SNP [dm6]	C	T	3.488e^-4	1	INTRON dlg1
2R	19206608	2R_19206608_SNP [dm3] 2R_23319085_SNP [dm6]	A	G	3.488e^-4	1	SYNONYMOUS_CODING CG30412 INTRON CG30412	TF binding site mE1_TFBS_chinmo
X	17578828	X_17578828_SNP [dm3] X_17684795_SNP [dm6]	G	T	3.491e^-4	1	INTRON chas
2L	3106144	2L_3106144_SNP [dm3] 2L_3106144_SNP [dm6]	A	T	3.491e^-4	1	INTRON toc	TF binding site mE1_TFBS_Trl
2R	8430423	2R_8430423_SNP [dm3] 2R_12542918_SNP [dm6]	G	A	3.493e^-4	1	INTRON fra
2L	5823088	2L_5823088_SNP [dm3] 2L_5823088_SNP [dm6]	G	A	3.524e^-4	1	UPSTREAM TrissinR INTERGENIC
3L	18842342	3L_18842342_SNP [dm3] 3L_18849242_SNP [dm6]	T	C	3.526e^-4	1	INTERGENIC
2L	16957775	2L_16957775_SNP [dm3] 2L_16957775_SNP [dm6]	T	A	3.534e^-4	1	INTERGENIC
3R	16492965	3R_16492965_SNP [dm3] 3R_20667243_SNP [dm6]	G	A	3.535e^-4	1	INTERGENIC
3L	13980486	3L_13980486_SNP [dm3] 3L_13987386_SNP [dm6]	C	T	3.554e^-4	1	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3L	6375961	3L_6375961_SNP [dm3] 3L_6382861_SNP [dm6]	G	A	3.565e^-4	1	INTERGENIC
3L	649872	3L_649872_SNP [dm3] 3L_649872_SNP [dm6]	A	T	3.577e^-4	1	INTRON Gale	TF binding site mE1_TFBS_chinmo
3R	25691636	3R_25691636_SNP [dm3] 3R_29865914_SNP [dm6]	A	T	3.577e^-4	1	UPSTREAM Zip99C INTRON Zip99C
3R	9567117	3R_9567117_SNP [dm3] 3R_13741395_SNP [dm6]	A	G	3.581e^-4	1	INTRON CG34383
2L	3235567	2L_3235567_SNP [dm3] 2L_3235567_SNP [dm6]	A	C	3.585e^-4	1	INTERGENIC
X	6830871	X_6830871_DEL [dm3] X_6936838_DEL [dm6]	CATAGAT	C	3.585e^-4	1	INTRON CG14431
2R	9412141	2R_9412141_SNP [dm3] 2R_13524636_SNP [dm6]	A	G	3.588e^-4	1	UPSTREAM CG13332 INTRON Vmat
2R	6352974	2R_6352974_DEL [dm3] 2R_10465469_DEL [dm6]	AA	A	3.598e^-4	1	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14705093	3L_14705093_SNP [dm3] 3L_14711993_SNP [dm6]	T	C	3.599e^-4	1	INTRON ome
X	7058990	X_7058990_SNP [dm3] X_7164957_SNP [dm6]	A	G	3.615e^-4	1	INTRON CG9650
3L	5601072	3L_5601072_SNP [dm3] 3L_5607972_SNP [dm6]	G	A	3.617e^-4	1	SYNONYMOUS_CODING Eaf6 DOWNSTREAM mthl2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	20712019	2L_20712019_SNP [dm3] 2L_20712019_SNP [dm6]	C	T	3.639e^-4	1	INTRON Hr38 EXON CR44188
3L	2912679	3L_2912679_SNP [dm3] 3L_2912679_SNP [dm6]	A	T	3.642e^-4	1	INTRON Shab
3L	9009392	3L_9009392_SNP [dm3] 3L_9016292_SNP [dm6]	G	T	3.645e^-4	1	INTRON Doc2	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	13010390	X_13010390_SNP [dm3] X_13116357_SNP [dm6]	A	C	3.650e^-4	1	INTRON CG42237
2L	10460342	2L_10460342_SNP [dm3] 2L_10460342_SNP [dm6]	G	A	3.680e^-4	1	SYNONYMOUS_CODING LM408
3R	20380582	3R_20380582_SNP [dm3] 3R_24554860_SNP [dm6]	G	A	3.684e^-4	1	SYNONYMOUS_CODING Esyt2 UPSTREAM tRNA:D:96A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	13977166	X_13977166_SNP [dm3] X_14083133_SNP [dm6]	G	C	3.694e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	12142988	2R_12142988_SNP [dm3] 2R_16255483_SNP [dm6]	C	A	3.697e^-4	1	INTRON CngA
2L	6243860	2L_6243860_SNP [dm3] 2L_6243860_SNP [dm6]	T	C	3.698e^-4	1	INTERGENIC
X	8615875	X_8615875_SNP [dm3] X_8721842_SNP [dm6]	A	G	3.698e^-4	1	DOWNSTREAM CG1789 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16957772	2L_16957772_SNP [dm3] 2L_16957772_SNP [dm6]	T	G	3.704e^-4	1	INTERGENIC
X	18224038	X_18224038_SNP [dm3] X_18330005_SNP [dm6]	G	T	3.713e^-4	1	INTRON CG6123
2L	21060249	2L_21060249_SNP [dm3] 2L_21060249_SNP [dm6]	C	T	3.724e^-4	1	INTRON CG9265
X	7962426	X_7962426_SNP [dm3] X_8068393_SNP [dm6]	G	T	3.737e^-4	1	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15777515	3L_15777515_SNP [dm3] 3L_15784415_SNP [dm6]	T	A	3.741e^-4	1	INTERGENIC
3L	8440756	3L_8440756_SNP [dm3] 3L_8447656_SNP [dm6]	A	G	3.742e^-4	1	INTRON CG6983
2R	6295940	2R_6295940_SNP [dm3] 2R_10408435_SNP [dm6]	C	T	3.743e^-4	1	UPSTREAM CG12898 DOWNSTREAM CG43177 & 1 other INTRON CG42732
3L	14828325	3L_14828325_SNP [dm3] 3L_14835225_SNP [dm6]	A	G	3.745e^-4	1	INTRON CG17839
2R	7218120	2R_7218120_SNP [dm3] 2R_11330615_SNP [dm6]	A	G	3.749e^-4	1	INTRON sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8384828	3R_8384828_SNP [dm3] 3R_12559106_SNP [dm6]	T	C	3.753e^-4	1	INTRON Octbeta2R
X	21425995	X_21425995_SNP [dm3] X_21554968_SNP [dm6]	T	G	3.755e^-4	1	INTERGENIC	transposable element FlyBase
3R	25175896	3R_25175896_SNP [dm3] 3R_29350174_SNP [dm6]	C	T	3.761e^-4	1	INTERGENIC
3R	25175916	3R_25175916_SNP [dm3] 3R_29350194_SNP [dm6]	A	G	3.761e^-4	1	INTERGENIC
2R	6351720	2R_6351720_DEL [dm3] 2R_10464215_DEL [dm6]	CC	C	3.763e^-4	1	UTR_3_PRIME Galphao DOWNSTREAM Galphao
2L	16957778	2L_16957778_SNP [dm3] 2L_16957778_SNP [dm6]	G	T	3.763e^-4	1	INTERGENIC
3R	8388773	3R_8388773_SNP [dm3] 3R_12563051_SNP [dm6]	G	A	3.771e^-4	1	UTR_5_PRIME Octbeta2R INTRON Octbeta2R
X	8620445	X_8620445_SNP [dm3] X_8726412_SNP [dm6]	T	C	3.775e^-4	1	DOWNSTREAM CR43297 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1277264	3L_1277264_SNP [dm3] 3L_1277264_SNP [dm6]	G	T	3.809e^-4	1	INTRON CG32333
2L	5258838	2L_5258838_SNP [dm3] 2L_5258838_SNP [dm6]	C	T	3.814e^-4	1	UPSTREAM CR44744 INTRON tkv	TF binding site mE1_TFBS_cad
3L	3000990	3L_3000990_SNP [dm3] 3L_3000990_SNP [dm6]	T	A	3.817e^-4	1	UPSTREAM FMRFaR INTERGENIC
2L	11213143	2L_11213143_SNP [dm3] 2L_11213143_SNP [dm6]	C	G	3.837e^-4	1	INTRON ab
2R	18265265	2R_18265265_DEL [dm3] 2R_22377760_DEL [dm6]	AT	A	3.839e^-4	1	UTR_3_PRIME Rtf1 DOWNSTREAM CR45327
3R	23544971	3R_23544971_SNP [dm3] 3R_27719249_SNP [dm6]	C	T	3.840e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9871083	2R_9871083_INS [dm3] 2R_13983578_INS [dm6]	A	AT	3.858e^-4	1	UTR_5_PRIME CG8067 UPSTREAM CG8067 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	7442862	2L_7442862_SNP [dm3] 2L_7442862_SNP [dm6]	C	T	3.898e^-4	1	UPSTREAM CG5973 INTRON CG5973
3L	8546058	3L_8546058_SNP [dm3] 3L_8552958_SNP [dm6]	T	A	3.956e^-4	1	INTRON rhea
3L	1587861	3L_1587861_SNP [dm3] 3L_1587861_SNP [dm6]	C	T	3.959e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_z
3L	7597895	3L_7597895_SNP [dm3] 3L_7604795_SNP [dm6]	T	C	3.967e^-4	1	UPSTREAM CG33275 INTRON CG33275
X	9463495	X_9463495_SNP [dm3] X_9569462_SNP [dm6]	G	T	3.973e^-4	1	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo
2L	16219218	2L_16219218_SNP [dm3] 2L_16219218_SNP [dm6]	G	T	3.979e^-4	1	INTERGENIC
2L	5488807	2L_5488807_SNP [dm3] 2L_5488807_SNP [dm6]	G	A	3.988e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	8378821	3R_8378821_SNP [dm3] 3R_12553099_SNP [dm6]	G	A	3.991e^-4	1	SYNONYMOUS_CODING Octbeta2R	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4290443	2L_4290443_SNP [dm3] 2L_4290443_SNP [dm6]	T	C	3.995e^-4	1	INTRON tutl
2R	10553593	2R_10553593_SNP [dm3] 2R_14666088_SNP [dm6]	T	C	3.996e^-4	1	NON_SYNONYMOUS_CODING CG12860 UPSTREAM CG12861
2R	12583235	2R_12583235_SNP [dm3] 2R_16695730_SNP [dm6]	C	A	3.999e^-4	1	INTRON CG30463
2R	13731148	2R_13731148_SNP [dm3] 2R_17843643_SNP [dm6]	G	C	4.002e^-4	1	UTR_5_PRIME olf186-F DOWNSTREAM grh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2735698	3L_2735698_SNP [dm3] 3L_2735698_SNP [dm6]	T	C	4.003e^-4	1	INTRON Mrtf
3L	2789177	3L_2789177_SNP [dm3] 3L_2789177_SNP [dm6]	T	G	4.004e^-4	1	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	6295288	2R_6295288_SNP [dm3] 2R_10407783_SNP [dm6]	T	C	4.017e^-4	1	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
2R	13495388	2R_13495388_SNP [dm3] 2R_17607883_SNP [dm6]	A	C	4.019e^-4	1	SYNONYMOUS_CODING CG10936
2L	12910990	2L_12910990_SNP [dm3] 2L_12910990_SNP [dm6]	G	T	4.019e^-4	1	INTERGENIC
3L	4488032	3L_4488032_SNP [dm3] 3L_4488032_SNP [dm6]	A	T	4.023e^-4	1	INTRON CG13722
2L	4711522	2L_4711522_SNP [dm3] 2L_4711522_SNP [dm6]	T	G	4.037e^-4	1	INTRON CG34351	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1277267	3L_1277267_DEL [dm3] 3L_1277267_DEL [dm6]	CACTTTTAGGTATC...	C	4.039e^-4	1	INTRON CG32333
3L	1277283	3L_1277283_SNP [dm3] 3L_1277283_SNP [dm6]	T	A	4.039e^-4	1	INTRON CG32333
3L	1277285	3L_1277285_SNP [dm3] 3L_1277285_SNP [dm6]	T	A	4.039e^-4	1	INTRON CG32333
3L	1277290	3L_1277290_SNP [dm3] 3L_1277290_SNP [dm6]	A	G	4.039e^-4	1	INTRON CG32333
3L	1277291	3L_1277291_SNP [dm3] 3L_1277291_SNP [dm6]	A	G	4.039e^-4	1	INTRON CG32333
3L	1277294	3L_1277294_SNP [dm3] 3L_1277294_SNP [dm6]	T	A	4.039e^-4	1	INTRON CG32333
3L	1277295	3L_1277295_SNP [dm3] 3L_1277295_SNP [dm6]	T	G	4.039e^-4	1	INTRON CG32333
3L	1277359	3L_1277359_DEL [dm3] 3L_1277359_DEL [dm6]	GTTCTATTT	CA	4.039e^-4	1	INTRON CG32333
2L	2969790	2L_2969790_DEL [dm3] 2L_2969790_DEL [dm6]	CAC	C	4.041e^-4	1	UTR_3_PRIME Rrp1 UPSTREAM Ts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8391983	2R_8391983_SNP [dm3] 2R_12504478_SNP [dm6]	A	G	4.044e^-4	1	INTRON fdl
2L	13119067	2L_13119067_SNP [dm3] 2L_13119067_SNP [dm6]	C	T	4.045e^-4	1	UPSTREAM CG43050 EXON CR44198
3R	8372226	3R_8372226_DEL [dm3] 3R_12546504_DEL [dm6]	GTGCGAAACGAAGTTTAACT...	G	4.054e^-4	1	INTRON Octbeta3R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15240282	3R_15240282_SNP [dm3] 3R_19414560_SNP [dm6]	C	T	4.056e^-4	1	INTRON CG31221	TF binding site mE1_TFBS_inv
2R	18369417	2R_18369417_SNP [dm3] 2R_22481912_SNP [dm6]	G	A	4.058e^-4	1	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11003665	2R_11003665_SNP [dm3] 2R_15116160_SNP [dm6]	T	C	4.065e^-4	1	INTRON chn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8387891	2R_8387891_SNP [dm3] 2R_12500386_SNP [dm6]	T	C	4.075e^-4	1	SYNONYMOUS_CODING s-cup INTRON fdl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6295287	2R_6295287_SNP [dm3] 2R_10407782_SNP [dm6]	T	C	4.077e^-4	1	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
2R	11598064	2R_11598064_SNP [dm3] 2R_15710559_SNP [dm6]	T	A	4.079e^-4	1	INTERGENIC
X	13800257	X_13800257_SNP [dm3] X_13906224_SNP [dm6]	G	T	4.083e^-4	1	INTRON mamo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3241011	2L_3241011_SNP [dm3] 2L_3241011_SNP [dm6]	C	G	4.089e^-4	1	INTERGENIC
3L	9176776	3L_9176776_SNP [dm3] 3L_9183676_SNP [dm6]	C	A	4.093e^-4	1	INTERGENIC
3L	1455098	3L_1455098_SNP [dm3] 3L_1455098_SNP [dm6]	T	G	4.116e^-4	1	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11094677	2L_11094677_SNP [dm3] 2L_11094677_SNP [dm6]	A	G	4.119e^-4	1	DOWNSTREAM Ge-1 INTRON CG4705
X	11275461	X_11275461_SNP [dm3] X_11381428_SNP [dm6]	A	G	4.120e^-4	1	INTRON dlg1
3L	16758608	3L_16758608_SNP [dm3] 3L_16765508_SNP [dm6]	C	T	4.124e^-4	1	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17668503	3L_17668503_SNP [dm3] 3L_17675403_SNP [dm6]	A	G	4.134e^-4	1	INTRON CG34251
X	20585793	X_20585793_SNP [dm3] X_20714766_SNP [dm6]	G	A	4.137e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18378628	2R_18378628_SNP [dm3] 2R_22491123_SNP [dm6]	C	A	4.140e^-4	1	NON_SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_cad
3L	7889053	3L_7889053_SNP [dm3] 3L_7895953_SNP [dm6]	A	G	4.148e^-4	1	UTR_3_PRIME eIF4E-5 DOWNSTREAM pbl	TF binding site mE1_TFBS_sens
2R	18369447	2R_18369447_SNP [dm3] 2R_22481942_SNP [dm6]	C	T	4.158e^-4	1	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19037350	3R_19037350_SNP [dm3] 3R_23211628_SNP [dm6]	C	T	4.170e^-4	1	INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
2R	12089017	2R_12089017_DEL [dm3] 2R_16201512_DEL [dm6]	AA	A	4.190e^-4	1	SPLICE_SITE_REGION shark INTRON shark	TF binding site mE1_TFBS_chinmo
2L	3106047	2L_3106047_SNP [dm3] 2L_3106047_SNP [dm6]	C	T	4.209e^-4	1	INTRON toc	TF binding site mE1_TFBS_Trl
2R	18122522	2R_18122522_DEL [dm3] 2R_22235017_DEL [dm6]	GATGGG	G	4.212e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
2R	19575377	2R_19575377_SNP [dm3] 2R_23687854_SNP [dm6]	A	G	4.220e^-4	1	UTR_3_PRIME St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad
X	21934241	X_21934241_SNP [dm3] X_22532405_SNP [dm6]	C	G	4.225e^-4	1	SYNONYMOUS_CODING S6kII INTRON CG17600
3L	18815613	3L_18815613_SNP [dm3] 3L_18822513_SNP [dm6]	A	T	4.230e^-4	1	UPSTREAM Cat DOWNSTREAM HipHop INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9365966	2L_9365966_SNP [dm3] 2L_9365966_SNP [dm6]	A	G	4.237e^-4	1	DOWNSTREAM CR43404 INTERGENIC
3L	2432782	3L_2432782_SNP [dm3] 3L_2432782_SNP [dm6]	C	T	4.240e^-4	1	INTRON CG45186
3R	2153180	3R_2153180_SNP [dm3] 3R_6327458_SNP [dm6]	A	T	4.251e^-4	1	DOWNSTREAM Osi17 INTERGENIC
2R	4095270	2R_4095270_SNP [dm3] 2R_8207765_SNP [dm6]	G	A	4.251e^-4	1	INTRON LRP1
X	18047934	X_18047934_SNP [dm3] X_18153901_SNP [dm6]	G	T	4.255e^-4	1	INTERGENIC
2R	7664587	2R_7664587_SNP [dm3] 2R_11777082_SNP [dm6]	C	T	4.255e^-4	1	INTRON ths
2L	16225292	2L_16225292_SNP [dm3] 2L_16225292_SNP [dm6]	G	A	4.260e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16101291	2R_16101291_SNP [dm3] 2R_20213786_SNP [dm6]	A	C	4.261e^-4	1	INTERGENIC
X	13479550	X_13479550_SNP [dm3] X_13585517_SNP [dm6]	A	T	4.269e^-4	1	INTRON Tango13
X	17578888	X_17578888_SNP [dm3] X_17684855_SNP [dm6]	A	T	4.271e^-4	1	INTRON chas
2R	10515181	2R_10515181_SNP [dm3] 2R_14627676_SNP [dm6]	G	A	4.272e^-4	1	INTERGENIC
2R	8425287	2R_8425287_SNP [dm3] 2R_12537782_SNP [dm6]	G	T	4.277e^-4	1	INTRON fra
2L	5410201	2L_5410201_SNP [dm3] 2L_5410201_SNP [dm6]	A	T	4.280e^-4	1	INTRON H15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20585792	X_20585792_SNP [dm3] X_20714765_SNP [dm6]	T	A	4.292e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12991247	X_12991247_SNP [dm3] X_13097214_SNP [dm6]	A	C	4.297e^-4	1	INTRON CG43313	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14791121	2L_14791121_SNP [dm3] 2L_14791121_SNP [dm6]	A	G	4.303e^-4	1	INTERGENIC
2L	3107756	2L_3107756_SNP [dm3] 2L_3107756_SNP [dm6]	A	G	4.306e^-4	1	INTRON toc	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	17921789	X_17921789_SNP [dm3] X_18027756_SNP [dm6]	A	C	4.309e^-4	1	INTRON Sh & 1 other
2R	9264049	2R_9264049_SNP [dm3] 2R_13376544_SNP [dm6]	A	T	4.312e^-4	1	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	20716490	2R_20716490_SNP [dm3] 2R_24828967_SNP [dm6]	G	A	4.319e^-4	1	INTRON Dll	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4488034	3L_4488034_DEL [dm3] 3L_4488034_DEL [dm6]	ATATA	T	4.323e^-4	1	INTRON CG13722
2L	21001944	2L_21001944_SNP [dm3] 2L_21001944_SNP [dm6]	C	A	4.329e^-4	1	INTRON CG42238
2R	8197567	2R_8197567_SNP [dm3] 2R_12310062_SNP [dm6]	G	C	4.333e^-4	1	SYNONYMOUS_CODING CG17739 UPSTREAM CG30203	TF binding site mE1_TFBS_chinmo
2R	18981261	2R_18981261_SNP [dm3] 2R_23093738_SNP [dm6]	T	A	4.335e^-4	1	NON_SYNONYMOUS_CODING CG9876
2L	3061308	2L_3061308_SNP [dm3] 2L_3061308_SNP [dm6]	T	C	4.340e^-4	1	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1518134	3R_1518134_SNP [dm3] 3R_5692412_SNP [dm6]	C	A	4.344e^-4	1	SYNONYMOUS_CODING CG2104 INTRON plx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12912425	2L_12912425_SNP [dm3] 2L_12912425_SNP [dm6]	T	C	4.356e^-4	1	UPSTREAM ACXC INTERGENIC
3L	16012589	3L_16012589_SNP [dm3] 3L_16019489_SNP [dm6]	T	C	4.366e^-4	1	DOWNSTREAM CR43949 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9255953	2R_9255953_SNP [dm3] 2R_13368448_SNP [dm6]	G	C	4.366e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	2794427	X_2794427_SNP [dm3] X_2900394_SNP [dm6]	A	G	4.366e^-4	1	INTRON kirre
2L	1918993	2L_1918993_SNP [dm3] 2L_1918993_SNP [dm6]	T	C	4.378e^-4	1	INTRON CG7337
2R	12777365	2R_12777365_SNP [dm3] 2R_16889860_SNP [dm6]	G	T	4.381e^-4	1	INTRON CG8910
2L	9907101	2L_9907101_DEL [dm3] 2L_9907101_DEL [dm6]	GTTGCTG	G	4.382e^-4	1	UTR_5_PRIME CG13124	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25741971	3R_25741971_SNP [dm3] 3R_29916249_SNP [dm6]	A	G	4.387e^-4	1	INTRON trp	TF binding site mE1_TFBS_chinmo
3R	25702392	3R_25702392_SNP [dm3] 3R_29876670_SNP [dm6]	G	T	4.391e^-4	1	UPSTREAM CG31038 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	20919885	3R_20919885_SNP [dm3] 3R_25094163_SNP [dm6]	A	T	4.393e^-4	1	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	15959414	2R_15959414_SNP [dm3] 2R_20071909_SNP [dm6]	A	G	4.395e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10107233	2R_10107233_DEL [dm3] 2R_14219728_DEL [dm6]	AA	A	4.396e^-4	1	UPSTREAM CG8468 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5583676	3L_5583676_SNP [dm3] 3L_5590576_SNP [dm6]	A	T	4.404e^-4	1	UTR_3_PRIME spo DOWNSTREAM l_3_psg2
3L	14371623	3L_14371623_SNP [dm3] 3L_14378523_SNP [dm6]	T	C	4.408e^-4	1	INTERGENIC
2R	21064448	2R_21064448_DEL [dm3] 2R_25176925_DEL [dm6]	AA	A	4.410e^-4	1	UPSTREAM Peb INTERGENIC
X	11275568	X_11275568_SNP [dm3] X_11381535_SNP [dm6]	C	T	4.410e^-4	1	INTRON dlg1
X	8715212	X_8715212_SNP [dm3] X_8821179_SNP [dm6]	T	A	4.419e^-4	1	INTERGENIC
X	8715221	X_8715221_SNP [dm3] X_8821188_SNP [dm6]	C	T	4.419e^-4	1	INTERGENIC
X	1567397	X_1567397_SNP [dm3] X_1673364_SNP [dm6]	T	G	4.425e^-4	1	UTR_3_PRIME hfw & 1 other DOWNSTREAM hfw
2L	3500958	2L_3500958_SNP [dm3] 2L_3500958_SNP [dm6]	T	A	4.428e^-4	1	DOWNSTREAM tim INTRON tim
2R	12003131	2R_12003131_SNP [dm3] 2R_16115626_SNP [dm6]	C	A	4.430e^-4	1	INTRON Asph
2L	1628894	2L_1628894_SNP [dm3] 2L_1628894_SNP [dm6]	C	G	4.446e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6081101	2R_6081101_DEL [dm3] 2R_10193596_DEL [dm6]	TACCAT	T	4.449e^-4	1	INTERGENIC
X	18047904	X_18047904_SNP [dm3] X_18153871_SNP [dm6]	C	T	4.453e^-4	1	INTERGENIC
2R	10828616	2R_10828616_SNP [dm3] 2R_14941111_SNP [dm6]	G	A	4.459e^-4	1	DOWNSTREAM Lap1 INTERGENIC
X	9449806	X_9449806_SNP [dm3] X_9555773_SNP [dm6]	T	C	4.472e^-4	1	UTR_3_PRIME CG15317 DOWNSTREAM RpS28b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2L	4008120	2L_4008120_SNP [dm3] 2L_4008120_SNP [dm6]	T	C	4.474e^-4	1	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
X	12109709	X_12109709_SNP [dm3] X_12215676_SNP [dm6]	A	G	4.484e^-4	1	INTRON Ten-a
3R	26781212	3R_26781212_SNP [dm3] 3R_30955490_SNP [dm6]	G	A	4.492e^-4	1	INTERGENIC
3L	2364652	3L_2364652_SNP [dm3] 3L_2364652_SNP [dm6]	C	T	4.498e^-4	1	INTERGENIC
2R	18367102	2R_18367102_SNP [dm3] 2R_22479597_SNP [dm6]	T	A	4.504e^-4	1	INTRON CG4752
X	17578916	X_17578916_SNP [dm3] X_17684883_SNP [dm6]	A	T	4.506e^-4	1	INTRON chas
X	14115988	X_14115988_SNP [dm3] X_14221955_SNP [dm6]	T	C	4.508e^-4	1	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20769689	2L_20769689_SNP [dm3] 2L_20769689_SNP [dm6]	G	A	4.514e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	22186638	X_22186638_SNP [dm3] X_22784802_SNP [dm6]	G	T	4.516e^-4	1	INTRON CR44997	transposable element FlyBase
3R	18797071	3R_18797071_SNP [dm3] 3R_22971349_SNP [dm6]	C	A	4.517e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13976881	3R_13976881_SNP [dm3] 3R_18151159_SNP [dm6]	A	G	4.518e^-4	1	UPSTREAM CG14316 INTERGENIC
X	8989968	X_8989968_SNP [dm3] X_9095935_SNP [dm6]	T	C	4.523e^-4	1	SYNONYMOUS_CODING CG7766 INTRON CG7766
3L	5493801	3L_5493801_SNP [dm3] 3L_5500701_SNP [dm6]	G	C	4.530e^-4	1	DOWNSTREAM CR44518 & 1 other INTERGENIC
3R	23284229	3R_23284229_SNP [dm3] 3R_27458507_SNP [dm6]	C	A	4.540e^-4	1	INTERGENIC
X	7607713	X_7607713_SNP [dm3] X_7713680_SNP [dm6]	G	A	4.544e^-4	1	SYNONYMOUS_CODING CG15478	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14477022	2R_14477022_DEL [dm3] 2R_18589517_DEL [dm6]	AA	A	4.558e^-4	1	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
3R	5761959	3R_5761959_SNP [dm3] 3R_9936237_SNP [dm6]	A	T	4.565e^-4	1	INTRON Glut4EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12053896	2L_12053896_SNP [dm3] 2L_12053896_SNP [dm6]	C	G	4.572e^-4	1	SYNONYMOUS_CODING JhI-21
X	17573283	X_17573283_INS [dm3] X_17679250_INS [dm6]	T	TTGT	4.585e^-4	1	INTRON chas
2R	10558696	2R_10558696_SNP [dm3] 2R_14671191_SNP [dm6]	C	T	4.587e^-4	1	DOWNSTREAM mspo INTRON CG12866
2R	7677230	2R_7677230_SNP [dm3] 2R_11789725_SNP [dm6]	A	T	4.588e^-4	1	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14622638	2R_14622638_SNP [dm3] 2R_18735133_SNP [dm6]	C	T	4.606e^-4	1	INTRON Hs3st-A
3L	2880811	3L_2880811_SNP [dm3] 3L_2880811_SNP [dm6]	C	T	4.608e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18102846	3L_18102846_SNP [dm3] 3L_18109746_SNP [dm6]	G	T	4.611e^-4	1	UPSTREAM mus304 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	6386520	2R_6386520_SNP [dm3] 2R_10499015_SNP [dm6]	A	T	4.612e^-4	1	INTRON lola
3L	15777536	3L_15777536_SNP [dm3] 3L_15784436_SNP [dm6]	T	A	4.614e^-4	1	INTERGENIC
3R	17090654	3R_17090654_SNP [dm3] 3R_21264932_SNP [dm6]	A	C	4.614e^-4	1	SYNONYMOUS_CODING ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7868994	2L_7868994_SNP [dm3] 2L_7868994_SNP [dm6]	G	A	4.624e^-4	1	INTRON Proc	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22185810	X_22185810_SNP [dm3] X_22783974_SNP [dm6]	G	T	4.628e^-4	1	INTRON CR44997	transposable element FlyBase
3L	14340818	3L_14340818_SNP [dm3] 3L_14347718_SNP [dm6]	A	G	4.642e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_twi
2R	7677362	2R_7677362_SNP [dm3] 2R_11789857_SNP [dm6]	A	C	4.643e^-4	1	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12923960	2L_12923960_SNP [dm3] 2L_12923960_SNP [dm6]	T	C	4.660e^-4	1	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3L	16733853	3L_16733853_SNP [dm3] 3L_16740753_SNP [dm6]	A	G	4.660e^-4	1	INTERGENIC
3L	4488052	3L_4488052_SNP [dm3] 3L_4488052_SNP [dm6]	A	T	4.665e^-4	1	INTRON CG13722
X	2603677	X_2603677_SNP [dm3] X_2709644_SNP [dm6]	T	C	4.680e^-4	1	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
2L	3500941	2L_3500941_SNP [dm3] 2L_3500941_SNP [dm6]	C	A	4.695e^-4	1	DOWNSTREAM tim INTRON tim
2R	6506086	2R_6506086_INS [dm3] 2R_10618581_INS [dm6]	T	TTCCTCT	4.696e^-4	1	INTRON CG11883	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6608725	3L_6608725_SNP [dm3] 3L_6615625_SNP [dm6]	T	A	4.697e^-4	1	INTRON CG8398
3L	11121198	3L_11121198_SNP [dm3] 3L_11128098_SNP [dm6]	T	A	4.697e^-4	1	INTRON CG42575
3R	14686243	3R_14686243_SNP [dm3] 3R_18860521_SNP [dm6]	C	A	4.718e^-4	1	INTERGENIC
2L	18254684	2L_18254684_SNP [dm3] 2L_18254684_SNP [dm6]	T	C	4.719e^-4	1	INTRON CG42750
3L	4597176	3L_4597176_SNP [dm3] 3L_4597176_SNP [dm6]	G	A	4.733e^-4	1	INTRON Src64B
3L	3251228	3L_3251228_INS [dm3] 3L_3251228_INS [dm6]	C	CTCC	4.735e^-4	1	DOWNSTREAM mir-282 EXON CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	7505005	X_7505005_SNP [dm3] X_7610972_SNP [dm6]	G	T	4.741e^-4	1	INTRON ct
2R	20637025	2R_20637025_SNP [dm3] 2R_24749502_SNP [dm6]	C	T	4.741e^-4	1	INTRON CG30421	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11275561	X_11275561_SNP [dm3] X_11381528_SNP [dm6]	G	A	4.744e^-4	1	INTRON dlg1
2L	5488790	2L_5488790_SNP [dm3] 2L_5488790_SNP [dm6]	T	C	4.749e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sbb
X	17578881	X_17578881_SNP [dm3] X_17684848_SNP [dm6]	A	T	4.753e^-4	1	INTRON chas
X	4861775	X_4861775_SNP [dm3] X_4967742_SNP [dm6]	T	G	4.770e^-4	1	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	23465617	3R_23465617_SNP [dm3] 3R_27639895_SNP [dm6]	T	A	4.771e^-4	1	UTR_3_PRIME tau DOWNSTREAM Mtl & 1 other
3R	15513072	3R_15513072_SNP [dm3] 3R_19687350_SNP [dm6]	A	G	4.781e^-4	1	INTRON Naam
3L	3005745	3L_3005745_SNP [dm3] 3L_3005745_SNP [dm6]	C	G	4.782e^-4	1	INTRON FMRFaR
X	20585816	X_20585816_SNP [dm3] X_20714789_SNP [dm6]	A	G	4.786e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19575374	2R_19575374_SNP [dm3] 2R_23687851_SNP [dm6]	G	A	4.786e^-4	1	UTR_3_PRIME St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad
2L	954186	2L_954186_SNP [dm3] 2L_954186_SNP [dm6]	A	C	4.796e^-4	1	INTRON CG4341
X	7605504	X_7605504_SNP [dm3] X_7711471_SNP [dm6]	C	G	4.798e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	17343337	2L_17343337_SNP [dm3] 2L_17343337_SNP [dm6]	A	G	4.800e^-4	1	INTERGENIC
3R	2863917	3R_2863917_SNP [dm3] 3R_7038195_SNP [dm6]	A	C	4.811e^-4	1	INTRON CR44933	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	6294780	2R_6294780_SNP [dm3] 2R_10407275_SNP [dm6]	A	T	4.815e^-4	1	SYNONYMOUS_CODING CG12898 INTRON CG42732
3R	2137286	3R_2137286_SNP [dm3] 3R_6311564_SNP [dm6]	T	A	4.823e^-4	1	UPSTREAM Osi17 DOWNSTREAM CG31560 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	8725609	X_8725609_SNP [dm3] X_8831576_SNP [dm6]	G	A	4.824e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8725626	X_8725626_SNP [dm3] X_8831593_SNP [dm6]	A	G	4.824e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13382809	2R_13382809_SNP [dm3] 2R_17495304_SNP [dm6]	A	G	4.833e^-4	1	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13010393	X_13010393_INS [dm3] X_13116360_INS [dm6]	C	CTCCCCCTTACC...	4.842e^-4	1	INTRON CG42237
X	5344330	X_5344330_INS [dm3] X_5450297_INS [dm6]	C	GA	4.844e^-4	1	INTRON SPR
3L	17920822	3L_17920822_SNP [dm3] 3L_17927722_SNP [dm6]	G	T	4.870e^-4	1	INTERGENIC
3R	12318165	3R_12318165_SNP [dm3] 3R_16492443_SNP [dm6]	G	A	4.871e^-4	1	SYNONYMOUS_CODING Cad89D
3R	20238726	3R_20238726_SNP [dm3] 3R_24413004_SNP [dm6]	G	C	4.878e^-4	1	INTRON nAChRalpha1
X	8996130	X_8996130_SNP [dm3] X_9102097_SNP [dm6]	G	A	4.883e^-4	1	SYNONYMOUS_CODING CG7766	TF binding site mE1_TFBS_cad
3R	9533651	3R_9533651_SNP [dm3] 3R_13707929_SNP [dm6]	G	A	4.884e^-4	1	SPLICE_SITE_REGION Adgf-C INTRON Adgf-C	TF binding site mE1_TFBS_cad
2L	14694945	2L_14694945_SNP [dm3] 2L_14694945_SNP [dm6]	C	G	4.886e^-4	1	INTERGENIC
2L	7999626	2L_7999626_SNP [dm3] 2L_7999626_SNP [dm6]	C	T	4.893e^-4	1	UTR_3_PRIME Sirup DOWNSTREAM Wwox	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	2863935	3R_2863935_SNP [dm3] 3R_7038213_SNP [dm6]	A	T	4.897e^-4	1	INTRON CR44933	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	12531485	X_12531485_SNP [dm3] X_12637452_SNP [dm6]	T	C	4.898e^-4	1	SYNONYMOUS_CODING Tomosyn	TF binding site BDTNP1_TFBS_dl
X	8529228	X_8529228_SNP [dm3] X_8635195_SNP [dm6]	G	A	4.899e^-4	1	INTRON oc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7203138	2R_7203138_SNP [dm3] 2R_11315633_SNP [dm6]	G	A	4.911e^-4	1	INTRON nompA	TF binding site mE1_TFBS_cad
X	14116002	X_14116002_SNP [dm3] X_14221969_SNP [dm6]	T	G	4.913e^-4	1	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22305848	3R_22305848_SNP [dm3] 3R_26480126_SNP [dm6]	T	C	4.914e^-4	1	INTRON plum
X	7599672	X_7599672_SNP [dm3] X_7705639_SNP [dm6]	A	T	4.915e^-4	1	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7097691	3L_7097691_SNP [dm3] 3L_7104591_SNP [dm6]	T	C	4.916e^-4	1	INTRON form3
X	7602524	X_7602524_SNP [dm3] X_7708491_SNP [dm6]	T	C	4.925e^-4	1	INTRON CHES-1-like & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3500957	2L_3500957_SNP [dm3] 2L_3500957_SNP [dm6]	T	A	4.930e^-4	1	DOWNSTREAM tim INTRON tim
X	11275509	X_11275509_SNP [dm3] X_11381476_SNP [dm6]	A	C	4.932e^-4	1	INTRON dlg1
2R	6340166	2R_6340166_SNP [dm3] 2R_10452661_SNP [dm6]	G	A	4.933e^-4	1	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
3R	12931572	3R_12931572_DEL [dm3] 3R_17105850_DEL [dm6]	CG	T	4.934e^-4	1	INTRON cher	TF binding site mE1_TFBS_cad
2R	8869953	2R_8869953_SNP [dm3] 2R_12982448_SNP [dm6]	C	T	4.936e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14290193	3L_14290193_SNP [dm3] 3L_14297093_SNP [dm6]	T	G	4.940e^-4	1	INTRON fz
3R	2897934	3R_2897934_SNP [dm3] 3R_7072212_SNP [dm6]	C	T	4.957e^-4	1	NON_SYNONYMOUS_CODING CG1104 DOWNSTREAM CG1965	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19470074	2L_19470074_SNP [dm3] 2L_19470074_SNP [dm6]	G	A	4.972e^-4	1	DOWNSTREAM CR43839 & 1 other EXON CR45723
2R	17560981	2R_17560981_SNP [dm3] 2R_21673476_SNP [dm6]	C	T	4.977e^-4	1	DOWNSTREAM CG15676 INTERGENIC
3R	2872277	3R_2872277_SNP [dm3] 3R_7046555_SNP [dm6]	G	A	4.978e^-4	1	INTERGENIC
2R	12343737	2R_12343737_SNP [dm3] 2R_16456232_SNP [dm6]	A	T	4.978e^-4	1	INTERGENIC
2L	3500968	2L_3500968_SNP [dm3] 2L_3500968_SNP [dm6]	T	C	4.978e^-4	1	DOWNSTREAM tim INTRON tim
3L	2735754	3L_2735754_SNP [dm3] 3L_2735754_SNP [dm6]	G	C	4.986e^-4	1	INTRON Mrtf
3R	2182005	3R_2182005_SNP [dm3] 3R_6356283_SNP [dm6]	C	T	4.996e^-4	1	INTRON Pak
2L	19771673	2L_19771673_INS [dm3] 2L_19771673_INS [dm6]	T	TACTATT	5.000e^-4	1	INTERGENIC
2R	8430348	2R_8430348_SNP [dm3] 2R_12542843_SNP [dm6]	C	T	5.010e^-4	1	INTRON fra
2L	5488889	2L_5488889_SNP [dm3] 2L_5488889_SNP [dm6]	T	C	5.014e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	5488892	2L_5488892_SNP [dm3] 2L_5488892_SNP [dm6]	T	A	5.014e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	5821969	2L_5821969_SNP [dm3] 2L_5821969_SNP [dm6]	A	T	5.021e^-4	1	INTERGENIC
3L	16666125	3L_16666125_SNP [dm3] 3L_16673025_SNP [dm6]	T	A	5.032e^-4	1	UPSTREAM CG13032 INTRON zetaCOP
X	14115517	X_14115517_SNP [dm3] X_14221484_SNP [dm6]	C	T	5.037e^-4	1	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20585764	X_20585764_SNP [dm3] X_20714737_SNP [dm6]	A	C	5.038e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14115633	X_14115633_SNP [dm3] X_14221600_SNP [dm6]	A	G	5.043e^-4	1	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14115954	X_14115954_SNP [dm3] X_14221921_SNP [dm6]	T	G	5.043e^-4	1	INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16758600	3L_16758600_SNP [dm3] 3L_16765500_SNP [dm6]	T	A	5.044e^-4	1	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	22190129	X_22190129_SNP [dm3] X_22788293_SNP [dm6]	G	A	5.055e^-4	1	INTRON CR44997
2L	11094669	2L_11094669_SNP [dm3] 2L_11094669_SNP [dm6]	T	C	5.058e^-4	1	DOWNSTREAM Ge-1 INTRON CG4705
2L	1136493	2L_1136493_SNP [dm3] 2L_1136493_SNP [dm6]	T	A	5.062e^-4	1	INTRON CG4577
3L	16732559	3L_16732559_SNP [dm3] 3L_16739459_SNP [dm6]	C	T	5.065e^-4	1	DOWNSTREAM CG9701 INTERGENIC
X	4666633	X_4666633_SNP [dm3] X_4772600_SNP [dm6]	C	A	5.073e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25355350	3R_25355350_SNP [dm3] 3R_29529628_SNP [dm6]	C	A	5.077e^-4	1	INTERGENIC
X	6678612	X_6678612_SNP [dm3] X_6784579_SNP [dm6]	G	A	5.106e^-4	1	INTRON C3G
2R	20637111	2R_20637111_SNP [dm3] 2R_24749588_SNP [dm6]	C	T	5.107e^-4	1	INTRON CG30421	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6295264	2R_6295264_SNP [dm3] 2R_10407759_SNP [dm6]	C	T	5.117e^-4	1	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
X	12121730	X_12121730_SNP [dm3] X_12227697_SNP [dm6]	G	A	5.119e^-4	1	INTRON Ten-a
2L	15612283	2L_15612283_SNP [dm3] 2L_15612283_SNP [dm6]	G	C	5.132e^-4	1	UPSTREAM CG15255 DOWNSTREAM CG11864 INTERGENIC
2R	13002423	2R_13002423_SNP [dm3] 2R_17114918_SNP [dm6]	C	T	5.132e^-4	1	DOWNSTREAM CG15611 INTERGENIC
3L	13455396	3L_13455396_SNP [dm3] 3L_13462296_SNP [dm6]	G	A	5.133e^-4	1	SPLICE_SITE_REGION CG10738 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21337317	X_21337317_SNP [dm3] X_21466290_SNP [dm6]	A	T	5.146e^-4	1	DOWNSTREAM CR45507 INTERGENIC
2R	6509123	2R_6509123_SNP [dm3] 2R_10621618_SNP [dm6]	C	G	5.154e^-4	1	UPSTREAM CG11883 INTRON CG11883
2L	7520090	2L_7520090_DEL [dm3] 2L_7520090_DEL [dm6]	AAG	A	5.154e^-4	1	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15892581	3R_15892581_SNP [dm3] 3R_20066859_SNP [dm6]	G	A	5.155e^-4	1	INTERGENIC
2L	18569376	2L_18569376_SNP [dm3] 2L_18569376_SNP [dm6]	C	T	5.158e^-4	1	INTRON Pde11
3R	9406842	3R_9406842_SNP [dm3] 3R_13581120_SNP [dm6]	C	T	5.162e^-4	1	INTERGENIC
2R	11524402	2R_11524402_SNP [dm3] 2R_15636897_SNP [dm6]	C	A	5.168e^-4	1	INTRON CG42524
X	13010385	X_13010385_INS [dm3] X_13116352_INS [dm6]	C	CAATTTC	5.178e^-4	1	INTRON CG42237
3R	15920174	3R_15920174_SNP [dm3] 3R_20094452_SNP [dm6]	G	A	5.192e^-4	1	INTERGENIC
3L	9093854	3L_9093854_SNP [dm3] 3L_9100754_SNP [dm6]	A	G	5.192e^-4	1	UTR_3_PRIME bol DOWNSTREAM bol
2L	15246481	2L_15246481_SNP [dm3] 2L_15246481_SNP [dm6]	C	T	5.198e^-4	1	UPSTREAM ZnT35C INTRON ZnT35C
2R	6082737	2R_6082737_SNP [dm3] 2R_10195232_SNP [dm6]	C	G	5.200e^-4	1	INTERGENIC
3L	16758681	3L_16758681_SNP [dm3] 3L_16765581_SNP [dm6]	T	A	5.200e^-4	1	UPSTREAM Nrt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16348813	3R_16348813_SNP [dm3] 3R_20523091_SNP [dm6]	C	G	5.208e^-4	1	INTERGENIC
X	7599460	X_7599460_SNP [dm3] X_7705427_SNP [dm6]	G	A	5.214e^-4	1	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	4971394	3R_4971394_SNP [dm3] 3R_9145672_SNP [dm6]	C	T	5.219e^-4	1	INTRON pum	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14455605	3R_14455605_SNP [dm3] 3R_18629883_SNP [dm6]	G	A	5.220e^-4	1	SYNONYMOUS_CODING CG14301 INTRON qin
X	22241017	X_22241017_SNP [dm3] X_22839181_SNP [dm6]	T	C	5.222e^-4	1	INTRON fog & 1 other
2R	14477058	2R_14477058_SNP [dm3] 2R_18589553_SNP [dm6]	A	G	5.237e^-4	1	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
3L	8313237	3L_8313237_SNP [dm3] 3L_8320137_SNP [dm6]	C	A	5.237e^-4	1	UPSTREAM CG13670 INTERGENIC
2R	18367435	2R_18367435_SNP [dm3] 2R_22479930_SNP [dm6]	T	C	5.248e^-4	1	SYNONYMOUS_CODING CG4752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7892918	3L_7892918_SNP [dm3] 3L_7899818_SNP [dm6]	T	A	5.254e^-4	1	UPSTREAM pbl INTRON pbl
3L	18885381	3L_18885381_SNP [dm3] 3L_18892281_SNP [dm6]	A	T	5.254e^-4	1	UPSTREAM NijB DOWNSTREAM CG3902 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	16732471	3L_16732471_SNP [dm3] 3L_16739371_SNP [dm6]	T	A	5.259e^-4	1	DOWNSTREAM CG9701 INTERGENIC
2R	21028700	2R_21028700_DEL [dm3] 2R_25141177_DEL [dm6]	GGTGGG	G	5.260e^-4	1	INTERGENIC
2L	9722433	2L_9722433_SNP [dm3] 2L_9722433_SNP [dm6]	G	T	5.264e^-4	1	INTRON Nckx30C	TF binding site mE1_TFBS_sens
2L	9722437	2L_9722437_SNP [dm3] 2L_9722437_SNP [dm6]	G	A	5.264e^-4	1	INTRON Nckx30C	TF binding site mE1_TFBS_sens
3L	3247130	3L_3247130_SNP [dm3] 3L_3247130_SNP [dm6]	C	T	5.267e^-4	1	UPSTREAM CG43389 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14694385	X_14694385_SNP [dm3] X_14800352_SNP [dm6]	C	T	5.276e^-4	1	SYNONYMOUS_CODING rut
3R	19530598	3R_19530598_SNP [dm3] 3R_23704876_SNP [dm6]	A	G	5.278e^-4	1	NON_SYNONYMOUS_CODING CG31414 DOWNSTREAM CG31413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	954274	2L_954274_SNP [dm3] 2L_954274_SNP [dm6]	A	C	5.279e^-4	1	INTRON CG4341
2L	954279	2L_954279_SNP [dm3] 2L_954279_SNP [dm6]	A	G	5.279e^-4	1	INTRON CG4341
3L	15857924	3L_15857924_SNP [dm3] 3L_15864824_SNP [dm6]	C	T	5.280e^-4	1	INTRON pHCl
2L	6454853	2L_6454853_SNP [dm3] 2L_6454853_SNP [dm6]	A	G	5.281e^-4	1	INTRON retm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	15246501	2L_15246501_SNP [dm3] 2L_15246501_SNP [dm6]	A	T	5.281e^-4	1	UPSTREAM ZnT35C INTRON ZnT35C
2R	12634694	2R_12634694_SNP [dm3] 2R_16747189_SNP [dm6]	A	G	5.292e^-4	1	UPSTREAM CG15617 DOWNSTREAM Acp53C14a INTERGENIC
2R	10827719	2R_10827719_SNP [dm3] 2R_14940214_SNP [dm6]	G	T	5.294e^-4	1	UTR_3_PRIME Lap1 DOWNSTREAM Lap1
2R	9862905	2R_9862905_SNP [dm3] 2R_13975400_SNP [dm6]	T	C	5.295e^-4	1	INTRON CG6701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3799801	2R_3799801_SNP [dm3] 2R_7912296_SNP [dm6]	T	C	5.295e^-4	1	INTRON CG30377
3L	11220177	3L_11220177_SNP [dm3] 3L_11227077_SNP [dm6]	A	T	5.297e^-4	1	INTRON CG42671
3R	25175644	3R_25175644_SNP [dm3] 3R_29349922_SNP [dm6]	G	A	5.324e^-4	1	INTERGENIC
3R	9675733	3R_9675733_SNP [dm3] 3R_13850011_SNP [dm6]	T	A	5.340e^-4	1	INTERGENIC
2R	20442763	2R_20442763_SNP [dm3] 2R_24555240_SNP [dm6]	G	C	5.341e^-4	1	INTRON CG4622 & 1 other
2L	12924967	2L_12924967_SNP [dm3] 2L_12924967_SNP [dm6]	A	G	5.350e^-4	1	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA UPSTREAM ACXE
X	10325421	X_10325421_SNP [dm3] X_10431388_SNP [dm6]	A	C	5.353e^-4	1	INTRON CG32683
3L	3249469	3L_3249469_SNP [dm3] 3L_3249469_SNP [dm6]	C	T	5.353e^-4	1	UPSTREAM CR43626 DOWNSTREAM CG43389 EXON CR43626	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	1006677	2L_1006677_SNP [dm3] 2L_1006677_SNP [dm6]	G	T	5.354e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	2724049	2L_2724049_SNP [dm3] 2L_2724049_SNP [dm6]	G	T	5.355e^-4	1	INTERGENIC
2R	11961349	2R_11961349_INS [dm3] 2R_16073844_INS [dm6]	T	TT	5.357e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10294902	X_10294902_SNP [dm3] X_10400869_SNP [dm6]	T	C	5.365e^-4	1	INTRON flw
3R	17803196	3R_17803196_INS [dm3] 3R_21977474_INS [dm6]	A	TG	5.368e^-4	1	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl
2L	7994399	2L_7994399_SNP [dm3] 2L_7994399_SNP [dm6]	T	C	5.369e^-4	1	UTR_3_PRIME CG7227 UPSTREAM pes & 1 other DOWNSTREAM CG7227	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_Trl
X	22242148	X_22242148_SNP [dm3] X_22840312_SNP [dm6]	T	A	5.374e^-4	1	INTRON fog & 1 other
2R	18999174	2R_18999174_SNP [dm3] 2R_23111651_SNP [dm6]	T	C	5.376e^-4	1	UPSTREAM CR44781 INTERGENIC
X	9463241	X_9463241_SNP [dm3] X_9569208_SNP [dm6]	G	A	5.381e^-4	1	SYNONYMOUS_CODING Cubn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8870325	2R_8870325_SNP [dm3] 2R_12982820_SNP [dm6]	G	T	5.395e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12587051	2L_12587051_SNP [dm3] 2L_12587051_SNP [dm6]	A	G	5.408e^-4	1	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7759527	X_7759527_SNP [dm3] X_7865494_SNP [dm6]	C	A	5.412e^-4	1	SYNONYMOUS_CODING Ir7b	TF binding site mE1_TFBS_sens
X	19241847	X_19241847_SNP [dm3] X_19347814_SNP [dm6]	G	A	5.413e^-4	1	UTR_5_PRIME nAChRalpha7 INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_twi
X	7599964	X_7599964_SNP [dm3] X_7705931_SNP [dm6]	A	G	5.414e^-4	1	UPSTREAM CHES-1-like INTRON CHES-1-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	4598033	3L_4598033_SNP [dm3] 3L_4598033_SNP [dm6]	C	T	5.418e^-4	1	INTRON Src64B
3L	1277315	3L_1277315_SNP [dm3] 3L_1277315_SNP [dm6]	C	T	5.424e^-4	1	INTRON CG32333
2R	4198065	2R_4198065_SNP [dm3] 2R_8310560_SNP [dm6]	T	G	5.429e^-4	1	DOWNSTREAM CR44449 & 1 other INTERGENIC
3R	12642471	3R_12642471_SNP [dm3] 3R_16816749_SNP [dm6]	C	G	5.433e^-4	1	INTRON abd-A	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3430605	2L_3430605_SNP [dm3] 2L_3430605_SNP [dm6]	T	G	5.434e^-4	1	INTERGENIC
2R	15964421	2R_15964421_SNP [dm3] 2R_20076916_SNP [dm6]	C	T	5.436e^-4	1	INTERGENIC
X	7604168	X_7604168_SNP [dm3] X_7710135_SNP [dm6]	G	A	5.443e^-4	1	UPSTREAM CHES-1-like INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	10663767	3L_10663767_SNP [dm3] 3L_10670667_SNP [dm6]	T	C	5.458e^-4	1	INTRON simj
3L	10663769	3L_10663769_SNP [dm3] 3L_10670669_SNP [dm6]	T	A	5.458e^-4	1	INTRON simj
3R	16531525	3R_16531525_SNP [dm3] 3R_20705803_SNP [dm6]	T	A	5.463e^-4	1	INTRON Oamb
2R	12343825	2R_12343825_SNP [dm3] 2R_16456320_SNP [dm6]	G	A	5.466e^-4	1	INTERGENIC
X	18043258	X_18043258_SNP [dm3] X_18149225_SNP [dm6]	G	C	5.467e^-4	1	INTERGENIC
2R	7105035	2R_7105035_SNP [dm3] 2R_11217530_SNP [dm6]	A	C	5.470e^-4	1	DOWNSTREAM shn INTRON CG9084
X	12122053	X_12122053_SNP [dm3] X_12228020_SNP [dm6]	A	G	5.481e^-4	1	INTRON Ten-a
2L	18285864	2L_18285864_SNP [dm3] 2L_18285864_SNP [dm6]	G	A	5.486e^-4	1	UPSTREAM CG31787 INTERGENIC
3L	9210086	3L_9210086_SNP [dm3] 3L_9216986_SNP [dm6]	G	C	5.499e^-4	1	INTERGENIC
2L	18219571	2L_18219571_SNP [dm3] 2L_18219571_SNP [dm6]	A	G	5.512e^-4	1	INTRON CG42750
3L	17680209	3L_17680209_SNP [dm3] 3L_17687109_SNP [dm6]	G	A	5.513e^-4	1	INTERGENIC
2R	6525565	2R_6525565_SNP [dm3] 2R_10638060_SNP [dm6]	A	C	5.514e^-4	1	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
3R	2117940	3R_2117940_SNP [dm3] 3R_6292218_SNP [dm6]	T	C	5.516e^-4	1	INTRON Osi13
2L	11297883	2L_11297883_SNP [dm3] 2L_11297883_SNP [dm6]	C	T	5.516e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	20835618	2L_20835618_SNP [dm3] 2L_20835618_SNP [dm6]	C	T	5.517e^-4	1	UTR_5_PRIME Oseg5	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	7604777	X_7604777_SNP [dm3] X_7710744_SNP [dm6]	A	T	5.527e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	4132317	X_4132317_SNP [dm3] X_4238284_SNP [dm6]	T	G	5.536e^-4	1	INTERGENIC
X	6426015	X_6426015_SNP [dm3] X_6531982_SNP [dm6]	C	T	5.537e^-4	1	SYNONYMOUS_CODING RpL7A UPSTREAM snoRNA:Or-CD10	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10299610	2R_10299610_SNP [dm3] 2R_14412105_SNP [dm6]	G	A	5.537e^-4	1	NON_SYNONYMOUS_CODING Sin1 UPSTREAM CG17385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2R	20703881	2R_20703881_SNP [dm3] 2R_24816358_SNP [dm6]	A	G	5.542e^-4	1	INTRON Dll
2L	16776825	2L_16776825_SNP [dm3] 2L_16776825_SNP [dm6]	A	C	5.545e^-4	1	INTRON Mhc
3L	11040437	3L_11040437_SNP [dm3] 3L_11047337_SNP [dm6]	A	T	5.565e^-4	1	UPSTREAM CG43693 INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	20483059	X_20483059_INS [dm3] X_20612032_INS [dm6]	T	TA	5.567e^-4	1	INTRON RunxA
X	11835583	X_11835583_SNP [dm3] X_11941550_SNP [dm6]	C	T	5.569e^-4	1	INTRON cac
X	14771937	X_14771937_SNP [dm3] X_14877904_SNP [dm6]	T	A	5.575e^-4	1	NON_SYNONYMOUS_CODING CG45064 UTR_5_PRIME CG45065 INTRON Flo2
X	11848059	X_11848059_SNP [dm3] X_11954026_SNP [dm6]	A	C	5.584e^-4	1	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9412047	2R_9412047_SNP [dm3] 2R_13524542_SNP [dm6]	A	G	5.588e^-4	1	UPSTREAM CG13332 INTRON Vmat
2L	2072677	2L_2072677_SNP [dm3] 2L_2072677_SNP [dm6]	G	C	5.590e^-4	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo
2L	18325611	2L_18325611_INS [dm3] 2L_18325611_INS [dm6]	C	CTTGCT	5.600e^-4	1	INTRON Fas3
2L	5153572	2L_5153572_SNP [dm3] 2L_5153572_SNP [dm6]	G	T	5.610e^-4	1	INTRON Msp300
2R	14519436	2R_14519436_SNP [dm3] 2R_18631931_SNP [dm6]	T	C	5.612e^-4	1	UTR_5_PRIME CG5482 UPSTREAM CG5482 DOWNSTREAM CG30122
2L	19194436	2L_19194436_SNP [dm3] 2L_19194436_SNP [dm6]	A	G	5.614e^-4	1	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	7207435	2R_7207435_SNP [dm3] 2R_11319930_SNP [dm6]	G	A	5.617e^-4	1	SYNONYMOUS_CODING Or47b
X	12121967	X_12121967_SNP [dm3] X_12227934_SNP [dm6]	T	C	5.622e^-4	1	INTRON Ten-a
2L	8324106	2L_8324106_SNP [dm3] 2L_8324106_SNP [dm6]	T	A	5.625e^-4	1	INTRON CG7781
3R	19038740	3R_19038740_DEL [dm3] 3R_23213018_DEL [dm6]	GG	G	5.637e^-4	1	INTRON cnc	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	10888953	2R_10888953_INS [dm3] 2R_15001448_INS [dm6]	C	CACA	5.638e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	8649941	3L_8649941_SNP [dm3] 3L_8656841_SNP [dm6]	A	G	5.646e^-4	1	INTERGENIC
3L	4788969	3L_4788969_SNP [dm3] 3L_4788969_SNP [dm6]	C	T	5.656e^-4	1	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3L	14288209	3L_14288209_SNP [dm3] 3L_14295109_SNP [dm6]	A	G	5.656e^-4	1	INTRON fz
3R	25358532	3R_25358532_SNP [dm3] 3R_29532810_SNP [dm6]	C	T	5.659e^-4	1	INTERGENIC
2R	18475309	2R_18475309_SNP [dm3] 2R_22587804_SNP [dm6]	C	T	5.660e^-4	1	INTRON dnr1
3R	18608120	3R_18608120_DEL [dm3] 3R_22782398_DEL [dm6]	TGT	T	5.669e^-4	1	UPSTREAM CR43654 INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.828e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1666 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9264245	2R_9264245_SNP [dm3] 2R_13376740_SNP [dm6]	A	T	8.810e^-7	0.389	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264244	2R_9264244_SNP [dm3] 2R_13376739_SNP [dm6]	A	G	1.090e^-6	0.389	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264268	2R_9264268_SNP [dm3] 2R_13376763_SNP [dm6]	C	T	1.090e^-6	0.389	INTRON CG10814	TF binding site mE1_TFBS_chinmo
3L	7309172	3L_7309172_SNP [dm3] 3L_7316072_SNP [dm6]	G	T	1.343e^-6	0.389	INTERGENIC
2R	9264032	2R_9264032_DEL [dm3] 2R_13376527_DEL [dm6]	TG	T	1.539e^-6	0.389	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264253	2R_9264253_SNP [dm3] 2R_13376748_SNP [dm6]	C	T	1.598e^-6	0.389	INTRON CG10814	TF binding site mE1_TFBS_chinmo
3L	7711802	3L_7711802_SNP [dm3] 3L_7718702_SNP [dm6]	C	T	1.605e^-6	0.389	UPSTREAM CG12262 & 1 other INTRON CG32373
3L	9176219	3L_9176219_SNP [dm3] 3L_9183119_SNP [dm6]	A	G	1.799e^-6	0.389	UPSTREAM Rdl INTERGENIC
2R	9264271	2R_9264271_SNP [dm3] 2R_13376766_SNP [dm6]	T	C	1.867e^-6	0.389	INTRON CG10814	TF binding site mE1_TFBS_chinmo
2R	9264247	2R_9264247_SNP [dm3] 2R_13376742_SNP [dm6]	G	A	2.505e^-6	0.47	INTRON CG10814	TF binding site mE1_TFBS_chinmo
3R	16889557	3R_16889557_DEL [dm3] 3R_21063835_DEL [dm6]	AA	A	2.927e^-6	0.499	SPLICE_SITE_REGION Cortactin INTRON Cortactin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	7272806	3L_7272806_SNP [dm3] 3L_7279706_SNP [dm6]	G	C	3.939e^-6	0.615	INTRON unc-13-4A
3L	9176228	3L_9176228_SNP [dm3] 3L_9183128_SNP [dm6]	C	T	5.147e^-6	0.742	UPSTREAM Rdl INTERGENIC
3L	9868462	3L_9868462_SNP [dm3] 3L_9875362_SNP [dm6]	C	T	6.654e^-6	0.891	UPSTREAM CR45406 INTERGENIC
3L	3452470	3L_3452470_SNP [dm3] 3L_3452470_SNP [dm6]	A	G	7.779e^-6	0.972	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5865634	3R_5865634_SNP [dm3] 3R_10039912_SNP [dm6]	G	A	8.527e^-6	0.99	INTRON Mical
X	13986412	X_13986412_SNP [dm3] X_14092379_SNP [dm6]	A	G	1.075e^-5	0.99	INTERGENIC
2L	9829674	2L_9829674_SNP [dm3] 2L_9829674_SNP [dm6]	G	A	1.200e^-5	0.99	INTRON nAChRalpha6
2L	7090625	2L_7090625_SNP [dm3] 2L_7090625_SNP [dm6]	T	G	1.249e^-5	0.99	INTERGENIC
3L	9868368	3L_9868368_SNP [dm3] 3L_9875268_SNP [dm6]	T	A	1.379e^-5	0.99	UPSTREAM CR45406 INTERGENIC
2L	6243980	2L_6243980_SNP [dm3] 2L_6243980_SNP [dm6]	C	G	1.395e^-5	0.99	INTERGENIC
2R	19558948	2R_19558948_SNP [dm3] 2R_23671425_SNP [dm6]	T	G	1.623e^-5	0.99	INTRON Pde8	TF binding site mE1_TFBS_HSA
2R	9264049	2R_9264049_SNP [dm3] 2R_13376544_SNP [dm6]	A	T	1.647e^-5	0.99	INTRON CG10814	TF binding site mE1_TFBS_chinmo
3R	25066247	3R_25066247_DEL [dm3] 3R_29240525_DEL [dm6]	ATGTCTCATCTCTGCACGTT...	A	1.744e^-5	0.99	UPSTREAM CG31427 DOWNSTREAM CG31445 INTERGENIC
3L	7388013	3L_7388013_SNP [dm3] 3L_7394913_SNP [dm6]	C	A	1.760e^-5	0.99	INTRON CG8563
3R	16173175	3R_16173175_SNP [dm3] 3R_20347453_SNP [dm6]	A	C	1.944e^-5	0.99	INTERGENIC
3R	22262817	3R_22262817_SNP [dm3] 3R_26437095_SNP [dm6]	T	G	1.954e^-5	0.99	INTERGENIC
X	5701631	X_5701631_SNP [dm3] X_5807598_SNP [dm6]	G	C	1.961e^-5	0.99	INTERGENIC
X	6522435	X_6522435_SNP [dm3] X_6628402_SNP [dm6]	A	G	1.969e^-5	0.99	INTRON pigs
3L	8408545	3L_8408545_SNP [dm3] 3L_8415445_SNP [dm6]	A	G	1.972e^-5	0.99	SYNONYMOUS_CODING Exo70 DOWNSTREAM CG32354
X	8810505	X_8810505_SNP [dm3] X_8916472_SNP [dm6]	T	A	2.015e^-5	0.99	INTRON rdgA
3L	7326277	3L_7326277_SNP [dm3] 3L_7333177_SNP [dm6]	C	T	2.101e^-5	0.99	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other
2R	13940679	2R_13940679_SNP [dm3] 2R_18053174_SNP [dm6]	C	A	2.225e^-5	0.99	SYNONYMOUS_CODING CG10911	TF binding site mE1_TFBS_cad
2L	20824538	2L_20824538_SNP [dm3] 2L_20824538_SNP [dm6]	A	T	2.250e^-5	0.99	UTR_5_PRIME CG9331 UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9868459	3L_9868459_DEL [dm3] 3L_9875359_DEL [dm6]	AA	A	2.262e^-5	0.99	UPSTREAM CR45406 INTERGENIC
2L	3185866	2L_3185866_INS [dm3] 2L_3185866_INS [dm6]	A	AA	2.267e^-5	0.99	INTRON CG34393
X	5050075	X_5050075_SNP [dm3] X_5156042_SNP [dm6]	T	C	2.269e^-5	0.99	INTRON rg & 1 other
X	3031938	X_3031938_SNP [dm3] X_3137905_SNP [dm6]	T	A	2.487e^-5	0.99	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18611546	2L_18611546_SNP [dm3] 2L_18611546_SNP [dm6]	G	A	2.616e^-5	0.99	INTRON Atac2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19558937	2R_19558937_SNP [dm3] 2R_23671414_SNP [dm6]	T	C	2.684e^-5	0.99	INTRON Pde8	TF binding site mE1_TFBS_HSA
3L	4652891	3L_4652891_SNP [dm3] 3L_4652891_SNP [dm6]	G	A	2.807e^-5	0.99	INTRON axo
2R	5390807	2R_5390807_SNP [dm3] 2R_9503302_SNP [dm6]	C	G	2.839e^-5	0.99	UPSTREAM brp DOWNSTREAM Wnt2 INTERGENIC
2L	11050364	2L_11050364_SNP [dm3] 2L_11050364_SNP [dm6]	T	C	2.852e^-5	0.99	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3619453	3R_3619453_SNP [dm3] 3R_7793731_SNP [dm6]	C	T	2.984e^-5	0.99	UPSTREAM CG2641 DOWNSTREAM CG10086 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16889461	3R_16889461_SNP [dm3] 3R_21063739_SNP [dm6]	C	G	3.021e^-5	0.99	SYNONYMOUS_CODING Cortactin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
3R	25434942	3R_25434942_DEL [dm3] 3R_29609220_DEL [dm6]	ATCAATTCAACTCGAGTGTC...	A	3.115e^-5	0.99	DOWNSTREAM Diedel2 INTRON alph
2L	3018855	2L_3018855_SNP [dm3] 2L_3018855_SNP [dm6]	C	G	3.182e^-5	0.99	UTR_5_PRIME CG17264 UPSTREAM CG17224	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14768699	2R_14768699_SNP [dm3] 2R_18881194_SNP [dm6]	T	C	3.223e^-5	0.99	INTRON sano
2L	12592136	2L_12592136_SNP [dm3] 2L_12592136_SNP [dm6]	T	C	3.328e^-5	0.99	INTRON nub
3R	11268190	3R_11268190_SNP [dm3] 3R_15442468_SNP [dm6]	A	T	3.395e^-5	0.99	UTR_3_PRIME AdamTS-A DOWNSTREAM Act88F	regulatory region REDfly_CRMs
3L	9176325	3L_9176325_SNP [dm3] 3L_9183225_SNP [dm6]	T	C	3.406e^-5	0.99	INTERGENIC
3R	10040361	3R_10040361_SNP [dm3] 3R_14214639_SNP [dm6]	A	G	3.575e^-5	0.99	UTR_5_PRIME Dop1R1 DOWNSTREAM CG9649
3R	26108331	3R_26108331_SNP [dm3] 3R_30282609_SNP [dm6]	G	A	3.583e^-5	0.99	INTRON hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	8435080	2R_8435080_DEL [dm3] 2R_12547575_DEL [dm6]	AA	A	3.592e^-5	0.99	INTRON fra	TF binding site BDTNP1_TFBS_dl
3R	6808879	3R_6808879_SNP [dm3] 3R_10983157_SNP [dm6]	G	A	3.606e^-5	0.99	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3022551	2L_3022551_SNP [dm3] 2L_3022551_SNP [dm6]	A	C	3.656e^-5	0.99	NON_SYNONYMOUS_CODING alpha4GT1 UPSTREAM CG3542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7190164	2L_7190164_SNP [dm3] 2L_7190164_SNP [dm6]	A	G	3.809e^-5	0.99	UPSTREAM CG4496 DOWNSTREAM CG4497 INTERGENIC
X	7263807	X_7263807_SNP [dm3] X_7369774_SNP [dm6]	C	G	3.818e^-5	0.99	INTRON CG1677 & 1 other
2R	19889233	2R_19889233_SNP [dm3] 2R_24001710_SNP [dm6]	G	C	3.946e^-5	0.99	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9868700	3L_9868700_SNP [dm3] 3L_9875600_SNP [dm6]	T	G	4.028e^-5	0.99	UPSTREAM CR45406 INTERGENIC
3L	10532564	3L_10532564_SNP [dm3] 3L_10539464_SNP [dm6]	G	A	4.226e^-5	0.99	INTRON A2bp1
3R	9980773	3R_9980773_SNP [dm3] 3R_14155051_SNP [dm6]	G	T	4.242e^-5	0.99	NON_SYNONYMOUS_CODING CG31533 UPSTREAM CR44215
3L	1282219	3L_1282219_SNP [dm3] 3L_1282219_SNP [dm6]	C	T	4.318e^-5	0.99	INTRON CG32333
2L	12127771	2L_12127771_SNP [dm3] 2L_12127771_SNP [dm6]	T	C	4.319e^-5	0.99	NON_SYNONYMOUS_CODING CG17211
3R	26090111	3R_26090111_SNP [dm3] 3R_30264389_SNP [dm6]	C	A	4.347e^-5	0.99	INTERGENIC
2L	19357507	2L_19357507_SNP [dm3] 2L_19357507_SNP [dm6]	C	T	4.413e^-5	0.99	INTRON dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	3240659	2L_3240659_SNP [dm3] 2L_3240659_SNP [dm6]	G	A	4.514e^-5	0.99	INTERGENIC
3L	5621825	3L_5621825_SNP [dm3] 3L_5628725_SNP [dm6]	C	T	4.532e^-5	0.99	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24787698	3R_24787698_SNP [dm3] 3R_28961976_SNP [dm6]	T	C	4.655e^-5	0.99	INTRON CG14521
2L	19596378	2L_19596378_SNP [dm3] 2L_19596378_SNP [dm6]	T	A	4.694e^-5	0.99	INTRON Lar
3R	16889790	3R_16889790_SNP [dm3] 3R_21064068_SNP [dm6]	T	G	4.728e^-5	0.99	UTR_5_PRIME Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	7272870	3L_7272870_SNP [dm3] 3L_7279770_SNP [dm6]	G	T	4.823e^-5	0.99	INTRON unc-13-4A
3L	8748874	3L_8748874_SNP [dm3] 3L_8755774_SNP [dm6]	T	G	4.972e^-5	0.99	UPSTREAM CG6576 INTRON Fhos
X	8675162	X_8675162_SNP [dm3] X_8781129_SNP [dm6]	C	T	5.031e^-5	0.99	INTRON Lim1
3R	14633958	3R_14633958_SNP [dm3] 3R_18808236_SNP [dm6]	A	G	5.137e^-5	0.99	INTRON CG18208
3R	5786187	3R_5786187_SNP [dm3] 3R_9960465_SNP [dm6]	A	C	5.141e^-5	0.99	INTRON Glut4EF
3L	9176599	3L_9176599_SNP [dm3] 3L_9183499_SNP [dm6]	A	C	5.182e^-5	0.99	INTERGENIC
X	17578861	X_17578861_SNP [dm3] X_17684828_SNP [dm6]	G	A	5.231e^-5	0.99	INTRON chas
3R	11257903	3R_11257903_SNP [dm3] 3R_15432181_SNP [dm6]	G	A	5.239e^-5	0.99	INTRON CG6118
2L	3235687	2L_3235687_SNP [dm3] 2L_3235687_SNP [dm6]	A	G	5.359e^-5	0.99	INTERGENIC
3L	3453891	3L_3453891_SNP [dm3] 3L_3453891_SNP [dm6]	T	C	5.400e^-5	0.99	INTRON eIF5B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22263681	3R_22263681_SNP [dm3] 3R_26437959_SNP [dm6]	C	A	5.402e^-5	0.99	INTERGENIC
3R	22700549	3R_22700549_SNP [dm3] 3R_26874827_SNP [dm6]	A	C	5.653e^-5	0.99	INTRON Rb97D	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	5885708	3R_5885708_SNP [dm3] 3R_10059986_SNP [dm6]	T	A	5.671e^-5	0.99	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
3L	3266362	3L_3266362_SNP [dm3] 3L_3266362_SNP [dm6]	G	A	5.804e^-5	0.99	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17578859	X_17578859_SNP [dm3] X_17684826_SNP [dm6]	G	A	5.808e^-5	0.99	INTRON chas
2L	3236134	2L_3236134_SNP [dm3] 2L_3236134_SNP [dm6]	G	A	5.906e^-5	0.99	INTERGENIC
2R	15423474	2R_15423474_SNP [dm3] 2R_19535969_SNP [dm6]	A	G	5.913e^-5	0.99	INTRON sm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14327309	3L_14327309_SNP [dm3] 3L_14334209_SNP [dm6]	G	A	5.921e^-5	0.99	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9007928	3L_9007928_SNP [dm3] 3L_9014828_SNP [dm6]	T	C	5.973e^-5	0.99	SYNONYMOUS_CODING Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7190240	2L_7190240_SNP [dm3] 2L_7190240_SNP [dm6]	G	T	5.974e^-5	0.99	UPSTREAM CG4496 DOWNSTREAM CG4497 INTERGENIC
3L	7326186	3L_7326186_SNP [dm3] 3L_7333086_SNP [dm6]	G	T	6.037e^-5	0.99	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other
X	14686570	X_14686570_SNP [dm3] X_14792537_SNP [dm6]	A	G	6.075e^-5	0.99	INTRON rut
3R	22742883	3R_22742883_SNP [dm3] 3R_26917161_SNP [dm6]	T	A	6.087e^-5	0.99	INTRON sda
X	1562220	X_1562220_SNP [dm3] X_1668187_SNP [dm6]	G	A	6.099e^-5	0.99	SYNONYMOUS_CODING dor DOWNSTREAM CG3740 INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16101291	2R_16101291_SNP [dm3] 2R_20213786_SNP [dm6]	A	C	6.120e^-5	0.99	INTERGENIC
3L	9868331	3L_9868331_DEL [dm3] 3L_9875231_DEL [dm6]	TTTAA	T	6.132e^-5	0.99	UPSTREAM CR45406 INTERGENIC
X	6522449	X_6522449_SNP [dm3] X_6628416_SNP [dm6]	A	T	6.298e^-5	0.99	INTRON pigs
2R	19515832	2R_19515832_SNP [dm3] 2R_23628309_SNP [dm6]	A	C	6.526e^-5	0.99	INTERGENIC
3L	2851789	3L_2851789_SNP [dm3] 3L_2851789_SNP [dm6]	T	G	6.636e^-5	0.99	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
X	17578833	X_17578833_SNP [dm3] X_17684800_SNP [dm6]	T	A	6.724e^-5	0.99	INTRON chas
X	5094515	X_5094515_SNP [dm3] X_5200482_SNP [dm6]	C	A	6.776e^-5	0.99	INTRON rg & 1 other
3L	9868366	3L_9868366_SNP [dm3] 3L_9875266_SNP [dm6]	G	C	6.860e^-5	0.99	UPSTREAM CR45406 INTERGENIC
3R	27182068	3R_27182068_DEL [dm3] 3R_31356346_DEL [dm6]	CAAC	C	6.880e^-5	0.99	INTRON CG34347
2L	3061308	2L_3061308_SNP [dm3] 2L_3061308_SNP [dm6]	T	C	6.934e^-5	0.99	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17578863	X_17578863_SNP [dm3] X_17684830_SNP [dm6]	A	T	6.961e^-5	0.99	INTRON chas
2L	109123	2L_109123_SNP [dm3] 2L_109123_SNP [dm6]	G	A	7.143e^-5	0.99	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23798521	3R_23798521_SNP [dm3] 3R_27972799_SNP [dm6]	T	C	7.255e^-5	0.99	INTRON betaTub97EF
3R	3585834	3R_3585834_SNP [dm3] 3R_7760112_SNP [dm6]	A	G	7.271e^-5	0.99	UPSTREAM Sp7 DOWNSTREAM CG10919 INTRON Sp7
2R	6424204	2R_6424204_SNP [dm3] 2R_10536699_SNP [dm6]	A	G	7.300e^-5	0.99	UPSTREAM snoRNA:lola-a DOWNSTREAM snoRNA:lola-b & 2 others INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	15388438	2L_15388438_SNP [dm3] 2L_15388438_SNP [dm6]	A	G	7.371e^-5	0.99	INTERGENIC
X	15885718	X_15885718_SNP [dm3] X_15991685_SNP [dm6]	G	A	7.382e^-5	0.99	UPSTREAM exd INTRON eIF5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5467731	X_5467731_SNP [dm3] X_5573698_SNP [dm6]	A	G	7.576e^-5	0.99	INTERGENIC
3R	13938269	3R_13938269_SNP [dm3] 3R_18112547_SNP [dm6]	A	G	7.585e^-5	0.99	INTRON sr	TF binding site mE1_TFBS_HSA
2L	16228576	2L_16228576_SNP [dm3] 2L_16228576_SNP [dm6]	C	T	7.596e^-5	0.99	INTERGENIC
2R	15423451	2R_15423451_DEL [dm3] 2R_19535946_DEL [dm6]	GG	G	7.599e^-5	0.99	INTRON sm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19212515	2R_19212515_SNP [dm3] 2R_23324992_SNP [dm6]	A	C	7.649e^-5	0.99	NON_SYNONYMOUS_CODING CG9861
2L	3240634	2L_3240634_SNP [dm3] 2L_3240634_SNP [dm6]	G	A	7.667e^-5	0.99	INTERGENIC
2L	3281746	2L_3281746_SNP [dm3] 2L_3281746_SNP [dm6]	T	G	7.675e^-5	0.99	INTERGENIC
2R	6424202	2R_6424202_SNP [dm3] 2R_10536697_SNP [dm6]	A	G	7.716e^-5	0.99	UPSTREAM snoRNA:lola-a DOWNSTREAM snoRNA:lola-b & 2 others INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	13938263	3R_13938263_INS [dm3] 3R_18112541_INS [dm6]	C	CTTCGC	7.796e^-5	0.99	INTRON sr	TF binding site mE1_TFBS_HSA
3R	13938267	3R_13938267_SNP [dm3] 3R_18112545_SNP [dm6]	A	C	7.796e^-5	0.99	INTRON sr	TF binding site mE1_TFBS_HSA
2R	18628057	2R_18628057_SNP [dm3] 2R_22740552_SNP [dm6]	A	G	7.944e^-5	0.99	UPSTREAM jbug DOWNSTREAM CG42260 INTERGENIC
3R	26091728	3R_26091728_SNP [dm3] 3R_30266006_SNP [dm6]	G	T	7.988e^-5	0.99	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8748873	3L_8748873_SNP [dm3] 3L_8755773_SNP [dm6]	T	G	7.994e^-5	0.99	UPSTREAM CG6576 INTRON Fhos
3L	7306435	3L_7306435_SNP [dm3] 3L_7313335_SNP [dm6]	A	T	8.007e^-5	0.99	UPSTREAM unc-13-4A INTERGENIC
2R	9249027	2R_9249027_SNP [dm3] 2R_13361522_SNP [dm6]	G	C	8.045e^-5	0.99	DOWNSTREAM CR45312 INTERGENIC
3L	4652884	3L_4652884_SNP [dm3] 3L_4652884_SNP [dm6]	G	A	8.058e^-5	0.99	INTRON axo
X	17578858	X_17578858_SNP [dm3] X_17684825_SNP [dm6]	C	T	8.063e^-5	0.99	INTRON chas
X	20493983	X_20493983_SNP [dm3] X_20622956_SNP [dm6]	C	A	8.067e^-5	0.99	INTRON RunxA
3R	5646292	3R_5646292_SNP [dm3] 3R_9820570_SNP [dm6]	T	A	8.075e^-5	0.99	UTR_3_PRIME CG42857 UPSTREAM CG9458
2L	8657178	2L_8657178_SNP [dm3] 2L_8657178_SNP [dm6]	G	A	8.104e^-5	0.99	INTRON Sema-1a
2R	9249045	2R_9249045_SNP [dm3] 2R_13361540_SNP [dm6]	A	T	8.127e^-5	0.99	DOWNSTREAM CR45312 INTERGENIC
2L	13702736	2L_13702736_SNP [dm3] 2L_13702736_SNP [dm6]	C	T	8.192e^-5	0.99	INTRON CG31814
2R	6525913	2R_6525913_SNP [dm3] 2R_10638408_SNP [dm6]	G	T	8.212e^-5	0.99	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2L	735623	2L_735623_SNP [dm3] 2L_735623_SNP [dm6]	T	G	8.254e^-5	0.99	INTERGENIC
2L	18254700	2L_18254700_SNP [dm3] 2L_18254700_SNP [dm6]	G	A	8.317e^-5	0.99	INTRON CG42750
2L	7190206	2L_7190206_SNP [dm3] 2L_7190206_SNP [dm6]	T	A	8.432e^-5	0.99	UPSTREAM CG4496 DOWNSTREAM CG4497 INTERGENIC
3L	12458502	3L_12458502_SNP [dm3] 3L_12465402_SNP [dm6]	T	A	8.472e^-5	0.99	INTRON eyg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	18316992	2L_18316992_SNP [dm3] 2L_18316992_SNP [dm6]	C	A	8.525e^-5	0.99	INTERGENIC
2L	14700420	2L_14700420_SNP [dm3] 2L_14700420_SNP [dm6]	T	C	8.533e^-5	0.99	INTERGENIC
X	17578840	X_17578840_SNP [dm3] X_17684807_SNP [dm6]	A	G	8.555e^-5	0.99	INTRON chas
X	17578843	X_17578843_SNP [dm3] X_17684810_SNP [dm6]	T	C	8.555e^-5	0.99	INTRON chas
3L	8672398	3L_8672398_SNP [dm3] 3L_8679298_SNP [dm6]	C	T	8.685e^-5	0.99	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs
3L	9134214	3L_9134214_SNP [dm3] 3L_9141114_SNP [dm6]	A	G	8.694e^-5	0.99	SYNONYMOUS_CODING nwk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4794357	2L_4794357_SNP [dm3] 2L_4794357_SNP [dm6]	A	C	8.694e^-5	0.99	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5468333	2L_5468333_SNP [dm3] 2L_5468333_SNP [dm6]	C	A	8.712e^-5	0.99	DOWNSTREAM mid INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	8169396	2R_8169396_SNP [dm3] 2R_12281891_SNP [dm6]	T	C	8.756e^-5	0.99	INTRON CG42700
X	8810432	X_8810432_SNP [dm3] X_8916399_SNP [dm6]	G	A	8.773e^-5	0.99	INTRON rdgA
3L	6954299	3L_6954299_SNP [dm3] 3L_6961199_SNP [dm6]	G	A	8.808e^-5	0.99	SYNONYMOUS_CODING sgl
3L	11409894	3L_11409894_SNP [dm3] 3L_11416794_SNP [dm6]	T	A	8.846e^-5	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7325986	3L_7325986_SNP [dm3] 3L_7332886_SNP [dm6]	G	A	8.882e^-5	0.99	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other	TF binding site mE1_TFBS_sens
3R	3463379	3R_3463379_SNP [dm3] 3R_7637657_SNP [dm6]	T	A	8.965e^-5	0.99	INTRON CG34127
3L	2631095	3L_2631095_SNP [dm3] 3L_2631095_SNP [dm6]	T	G	8.998e^-5	0.99	UPSTREAM CR45660 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19621744	2L_19621744_SNP [dm3] 2L_19621744_SNP [dm6]	A	G	9.009e^-5	0.99	INTRON Lar
2R	6353759	2R_6353759_SNP [dm3] 2R_10466254_SNP [dm6]	C	T	9.166e^-5	0.99	SYNONYMOUS_CODING Caf1-105 DOWNSTREAM Galphao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1420330	3L_1420330_SNP [dm3] 3L_1420330_SNP [dm6]	C	G	9.190e^-5	0.99	DOWNSTREAM CG9173 INTRON Ptp61F
3R	25090294	3R_25090294_SNP [dm3] 3R_29264572_SNP [dm6]	C	T	9.257e^-5	0.99	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12816910	2L_12816910_SNP [dm3] 2L_12816910_SNP [dm6]	C	A	9.340e^-5	0.99	DOWNSTREAM kek1 INTERGENIC
3L	8313256	3L_8313256_SNP [dm3] 3L_8320156_SNP [dm6]	T	C	9.348e^-5	0.99	UPSTREAM CG13670 INTERGENIC
2L	1006677	2L_1006677_SNP [dm3] 2L_1006677_SNP [dm6]	G	T	9.411e^-5	0.99	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	16362521	2R_16362521_SNP [dm3] 2R_20475016_SNP [dm6]	A	T	9.734e^-5	0.99	INTRON CG12484
3R	26078635	3R_26078635_SNP [dm3] 3R_30252913_SNP [dm6]	T	A	9.950e^-5	0.99	UPSTREAM CG18404 DOWNSTREAM CG9682 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14725678	3L_14725678_SNP [dm3] 3L_14732578_SNP [dm6]	G	A	1.006e^-4	0.99	DOWNSTREAM CG13471 INTRON ome
2L	3060489	2L_3060489_SNP [dm3] 2L_3060489_SNP [dm6]	T	G	1.024e^-4	0.99	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7706326	2R_7706326_SNP [dm3] 2R_11818821_SNP [dm6]	G	T	1.025e^-4	0.99	INTERGENIC
2R	4094991	2R_4094991_SNP [dm3] 2R_8207486_SNP [dm6]	A	G	1.028e^-4	0.99	INTRON LRP1
3R	25090296	3R_25090296_SNP [dm3] 3R_29264574_SNP [dm6]	T	C	1.037e^-4	0.99	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13940881	2R_13940881_SNP [dm3] 2R_18053376_SNP [dm6]	A	T	1.069e^-4	0.99	INTRON CG10911	TF binding site mE1_TFBS_cad
3L	16056420	3L_16056420_SNP [dm3] 3L_16063320_SNP [dm6]	T	C	1.073e^-4	0.99	UTR_3_PRIME Mbs INTRON Mbs
2L	12651099	2L_12651099_SNP [dm3] 2L_12651099_SNP [dm6]	C	G	1.083e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13985639	X_13985639_DEL [dm3] X_14091606_DEL [dm6]	CTTGGCA	C	1.084e^-4	0.99	INTERGENIC
2R	14597731	2R_14597731_SNP [dm3] 2R_18710226_SNP [dm6]	G	A	1.087e^-4	0.99	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
3R	5885676	3R_5885676_SNP [dm3] 3R_10059954_SNP [dm6]	G	C	1.088e^-4	0.99	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
2L	1666693	2L_1666693_SNP [dm3] 2L_1666693_SNP [dm6]	T	C	1.089e^-4	0.99	INTRON chinmo
2R	8514302	2R_8514302_SNP [dm3] 2R_12626797_SNP [dm6]	C	A	1.095e^-4	0.99	UTR_5_PRIME CG17760
X	17578810	X_17578810_SNP [dm3] X_17684777_SNP [dm6]	C	T	1.102e^-4	0.99	INTRON chas
3L	3453928	3L_3453928_SNP [dm3] 3L_3453928_SNP [dm6]	C	T	1.106e^-4	0.99	INTRON eIF5B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14067721	3L_14067721_SNP [dm3] 3L_14074621_SNP [dm6]	C	T	1.110e^-4	0.99	SYNONYMOUS_CODING Pex1
2L	13716126	2L_13716126_SNP [dm3] 2L_13716126_SNP [dm6]	A	G	1.113e^-4	0.99	INTRON CG31814
3L	12482930	3L_12482930_SNP [dm3] 3L_12489830_SNP [dm6]	C	T	1.114e^-4	0.99	NON_SYNONYMOUS_CODING CG10660 UPSTREAM CR45681	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7190238	2L_7190238_SNP [dm3] 2L_7190238_SNP [dm6]	C	T	1.117e^-4	0.99	UPSTREAM CG4496 DOWNSTREAM CG4497 INTERGENIC
2R	9931926	2R_9931926_SNP [dm3] 2R_14044421_SNP [dm6]	A	G	1.126e^-4	0.99	INTRON mam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2845177	2L_2845177_SNP [dm3] 2L_2845177_SNP [dm6]	G	A	1.127e^-4	0.99	SYNONYMOUS_CODING CG18557 UPSTREAM CG18558 DOWNSTREAM CG3117
3L	2999329	3L_2999329_INS [dm3] 3L_2999329_INS [dm6]	G	TGGAAATT	1.151e^-4	0.99	INTERGENIC
3L	7326135	3L_7326135_SNP [dm3] 3L_7333035_SNP [dm6]	G	T	1.162e^-4	0.99	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other	TF binding site mE1_TFBS_sens
3R	16173118	3R_16173118_SNP [dm3] 3R_20347396_SNP [dm6]	C	A	1.170e^-4	0.99	INTERGENIC
3L	15388354	3L_15388354_SNP [dm3] 3L_15395254_SNP [dm6]	C	G	1.172e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19086779	3R_19086779_SNP [dm3] 3R_23261057_SNP [dm6]	C	T	1.178e^-4	0.99	UTR_3_PRIME orb DOWNSTREAM CG13827
3R	23657442	3R_23657442_SNP [dm3] 3R_27831720_SNP [dm6]	G	C	1.178e^-4	0.99	INTRON CG34353
3L	15298335	3L_15298335_SNP [dm3] 3L_15305235_SNP [dm6]	C	T	1.183e^-4	0.99	UPSTREAM CG7255 INTRON CG7255	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16889661	3R_16889661_SNP [dm3] 3R_21063939_SNP [dm6]	T	C	1.188e^-4	0.99	SYNONYMOUS_CODING Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	8344606	2R_8344606_SNP [dm3] 2R_12457101_SNP [dm6]	A	G	1.191e^-4	0.99	INTRON Lac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9792962	2L_9792962_SNP [dm3] 2L_9792962_SNP [dm6]	A	G	1.229e^-4	0.99	SYNONYMOUS_CODING CG13123 UTR_5_PRIME CG13123 DOWNSTREAM nAChRalpha6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2845190	2L_2845190_SNP [dm3] 2L_2845190_SNP [dm6]	C	A	1.232e^-4	0.99	NON_SYNONYMOUS_CODING CG18557 UPSTREAM CG18558 DOWNSTREAM CG3117
2L	16585593	2L_16585593_INS [dm3] 2L_16585593_INS [dm6]	T	TTT	1.234e^-4	0.99	INTRON CG42389
3L	2552690	3L_2552690_SNP [dm3] 3L_2552690_SNP [dm6]	A	T	1.247e^-4	0.99	INTRON Spn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1236322	3L_1236322_SNP [dm3] 3L_1236322_SNP [dm6]	T	A	1.253e^-4	0.99	DOWNSTREAM CG33966 & 2 others INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17578828	X_17578828_SNP [dm3] X_17684795_SNP [dm6]	G	T	1.260e^-4	0.99	INTRON chas
2L	7056065	2L_7056065_SNP [dm3] 2L_7056065_SNP [dm6]	A	T	1.281e^-4	0.99	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19357436	2L_19357436_SNP [dm3] 2L_19357436_SNP [dm6]	C	T	1.289e^-4	0.99	INTRON dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	18615685	2L_18615685_SNP [dm3] 2L_18615685_SNP [dm6]	C	T	1.292e^-4	0.99	SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7388002	3L_7388002_SNP [dm3] 3L_7394902_SNP [dm6]	T	C	1.296e^-4	0.99	INTRON CG8563
X	13060061	X_13060061_SNP [dm3] X_13166028_SNP [dm6]	G	A	1.297e^-4	0.99	INTRON CG34411
X	8725581	X_8725581_SNP [dm3] X_8831548_SNP [dm6]	G	A	1.303e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10795015	3L_10795015_SNP [dm3] 3L_10801915_SNP [dm6]	A	G	1.304e^-4	0.99	NON_SYNONYMOUS_CODING CG12523
3R	24903900	3R_24903900_SNP [dm3] 3R_29078178_SNP [dm6]	G	T	1.308e^-4	0.99	INTRON CG11873
3L	8408266	3L_8408266_SNP [dm3] 3L_8415166_SNP [dm6]	A	C	1.311e^-4	0.99	SYNONYMOUS_CODING Exo70 DOWNSTREAM CG32354
3L	2432782	3L_2432782_SNP [dm3] 3L_2432782_SNP [dm6]	C	T	1.316e^-4	0.99	INTRON CG45186
X	8898462	X_8898462_SNP [dm3] X_9004429_SNP [dm6]	G	C	1.325e^-4	0.99	INTRON rdgA & 1 other
X	8898463	X_8898463_SNP [dm3] X_9004430_SNP [dm6]	G	T	1.325e^-4	0.99	INTRON rdgA & 1 other
3R	22766419	3R_22766419_SNP [dm3] 3R_26940697_SNP [dm6]	G	A	1.328e^-4	0.99	INTRON sda
3L	7243274	3L_7243274_SNP [dm3] 3L_7250174_SNP [dm6]	C	A	1.341e^-4	0.99	UPSTREAM Cdc27 & 1 other DOWNSTREAM CG14830 INTRON MED4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	16354692	2R_16354692_SNP [dm3] 2R_20467187_SNP [dm6]	A	C	1.341e^-4	0.99	INTRON CG12484
2R	6385042	2R_6385042_SNP [dm3] 2R_10497537_SNP [dm6]	T	G	1.344e^-4	0.99	NON_SYNONYMOUS_CODING lola INTRON lola	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	15298402	3L_15298402_SNP [dm3] 3L_15305302_SNP [dm6]	A	C	1.345e^-4	0.99	UTR_5_PRIME CG7255 UPSTREAM CG7255	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6243860	2L_6243860_SNP [dm3] 2L_6243860_SNP [dm6]	T	C	1.347e^-4	0.99	INTERGENIC
3L	10549347	3L_10549347_SNP [dm3] 3L_10556247_SNP [dm6]	A	G	1.351e^-4	0.99	DOWNSTREAM CG6527 INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3R	23119776	3R_23119776_SNP [dm3] 3R_27294054_SNP [dm6]	C	T	1.367e^-4	0.99	DOWNSTREAM CG3339 INTERGENIC
2L	9770876	2L_9770876_SNP [dm3] 2L_9770876_SNP [dm6]	A	C	1.367e^-4	0.99	DOWNSTREAM ppk16 & 1 other INTRON ppk18
2L	2844472	2L_2844472_SNP [dm3] 2L_2844472_SNP [dm6]	T	A	1.370e^-4	0.99	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG18557	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10124654	3L_10124654_SNP [dm3] 3L_10131554_SNP [dm6]	T	G	1.371e^-4	0.99	INTRON dpr6
2R	14856504	2R_14856504_SNP [dm3] 2R_18968999_SNP [dm6]	C	T	1.383e^-4	0.99	DOWNSTREAM prod INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14708671	2L_14708671_SNP [dm3] 2L_14708671_SNP [dm6]	G	A	1.385e^-4	0.99	INTERGENIC
2R	15835533	2R_15835533_SNP [dm3] 2R_19948028_SNP [dm6]	A	C	1.391e^-4	0.99	UTR_3_PRIME CG30447
2L	18288750	2L_18288750_SNP [dm3] 2L_18288750_SNP [dm6]	G	A	1.415e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	15964421	2R_15964421_SNP [dm3] 2R_20076916_SNP [dm6]	C	T	1.420e^-4	0.99	INTERGENIC
X	17578916	X_17578916_SNP [dm3] X_17684883_SNP [dm6]	A	T	1.432e^-4	0.99	INTRON chas
3R	12928745	3R_12928745_SNP [dm3] 3R_17103023_SNP [dm6]	A	G	1.442e^-4	0.99	INTRON cher
2R	6764274	2R_6764274_SNP [dm3] 2R_10876769_SNP [dm6]	G	A	1.443e^-4	0.99	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	18577933	2R_18577933_SNP [dm3] 2R_22690428_SNP [dm6]	A	T	1.445e^-4	0.99	UPSTREAM CR44764 DOWNSTREAM CR44763 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	3010983	2L_3010983_DEL [dm3] 2L_3010983_DEL [dm6]	TT	C	1.456e^-4	0.99	INTRON CG17265
3L	14187859	3L_14187859_SNP [dm3] 3L_14194759_SNP [dm6]	T	G	1.458e^-4	0.99	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16101549	2R_16101549_SNP [dm3] 2R_20214044_SNP [dm6]	G	A	1.460e^-4	0.99	INTERGENIC
3L	2552725	3L_2552725_SNP [dm3] 3L_2552725_SNP [dm6]	T	C	1.465e^-4	0.99	INTRON Spn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	12912425	2L_12912425_SNP [dm3] 2L_12912425_SNP [dm6]	T	C	1.466e^-4	0.99	UPSTREAM ACXC INTERGENIC
3L	13922268	3L_13922268_SNP [dm3] 3L_13929168_SNP [dm6]	A	T	1.474e^-4	0.99	UPSTREAM Gl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	12652191	2L_12652191_SNP [dm3] 2L_12652191_SNP [dm6]	G	A	1.474e^-4	0.99	INTERGENIC
2R	19203065	2R_19203065_SNP [dm3] 2R_23315542_SNP [dm6]	A	C	1.477e^-4	0.99	INTERGENIC
2L	3023058	2L_3023058_SNP [dm3] 2L_3023058_SNP [dm6]	T	G	1.480e^-4	0.99	UTR_5_PRIME alpha4GT1 UPSTREAM CG3542	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	7068930	2L_7068930_SNP [dm3] 2L_7068930_SNP [dm6]	C	T	1.482e^-4	0.99	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
3R	13606760	3R_13606760_SNP [dm3] 3R_17781038_SNP [dm6]	A	G	1.483e^-4	0.99	UPSTREAM CG43102 INTRON CG43102
3R	24794792	3R_24794792_SNP [dm3] 3R_28969070_SNP [dm6]	T	C	1.493e^-4	0.99	INTRON CG14521
3L	12937253	3L_12937253_SNP [dm3] 3L_12944153_SNP [dm6]	A	T	1.494e^-4	0.99	INTERGENIC
3L	8798035	3L_8798035_SNP [dm3] 3L_8804935_SNP [dm6]	A	G	1.500e^-4	0.99	SYNONYMOUS_CODING CG34427 UPSTREAM CG32023 DOWNSTREAM CG13312
3L	10648640	3L_10648640_SNP [dm3] 3L_10655540_SNP [dm6]	T	A	1.535e^-4	0.99	INTRON CG32066
2L	3819605	2L_3819605_SNP [dm3] 2L_3819605_SNP [dm6]	A	G	1.539e^-4	0.99	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15311505	X_15311505_SNP [dm3] X_15417472_SNP [dm6]	C	A	1.541e^-4	0.99	INTRON Cngl
3L	7889053	3L_7889053_SNP [dm3] 3L_7895953_SNP [dm6]	A	G	1.543e^-4	0.99	UTR_3_PRIME eIF4E-5 DOWNSTREAM pbl	TF binding site mE1_TFBS_sens
2L	7044706	2L_7044706_SNP [dm3] 2L_7044706_SNP [dm6]	G	A	1.559e^-4	0.99	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17578794	X_17578794_SNP [dm3] X_17684761_SNP [dm6]	C	A	1.584e^-4	0.99	INTRON chas
3R	20874859	3R_20874859_SNP [dm3] 3R_25049137_SNP [dm6]	A	G	1.584e^-4	0.99	UPSTREAM CG11791 INTRON CG11790	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	6147455	X_6147455_SNP [dm3] X_6253422_SNP [dm6]	A	T	1.585e^-4	0.99	INTRON Rbcn-3A
2L	18613083	2L_18613083_SNP [dm3] 2L_18613083_SNP [dm6]	A	T	1.590e^-4	0.99	UPSTREAM Atac2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19512147	3L_19512147_SNP [dm3] 3L_19519047_SNP [dm6]	T	C	1.591e^-4	0.99	UPSTREAM Cpr76Ba & 1 other INTERGENIC
3R	26091731	3R_26091731_INS [dm3] 3R_30266009_INS [dm6]	G	GTG	1.594e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17578817	X_17578817_SNP [dm3] X_17684784_SNP [dm6]	G	T	1.597e^-4	0.99	INTRON chas
2L	3235567	2L_3235567_SNP [dm3] 2L_3235567_SNP [dm6]	A	C	1.609e^-4	0.99	INTERGENIC
3R	10040313	3R_10040313_SNP [dm3] 3R_14214591_SNP [dm6]	A	C	1.620e^-4	0.99	START_GAINED Dop1R1 UTR_5_PRIME Dop1R1 DOWNSTREAM CG9649
2R	5838941	2R_5838941_SNP [dm3] 2R_9951436_SNP [dm6]	G	T	1.621e^-4	0.99	INTRON Mef2
X	6522470	X_6522470_SNP [dm3] X_6628437_SNP [dm6]	C	A	1.632e^-4	0.99	INTRON pigs
3R	24083525	3R_24083525_SNP [dm3] 3R_28257803_SNP [dm6]	T	C	1.642e^-4	0.99	INTERGENIC
2L	6857181	2L_6857181_SNP [dm3] 2L_6857181_SNP [dm6]	C	T	1.647e^-4	0.99	SYNONYMOUS_CODING l_2_k09022	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
3L	7272853	3L_7272853_SNP [dm3] 3L_7279753_SNP [dm6]	C	A	1.647e^-4	0.99	INTRON unc-13-4A
3L	7272884	3L_7272884_SNP [dm3] 3L_7279784_SNP [dm6]	G	A	1.647e^-4	0.99	INTRON unc-13-4A
3L	7272885	3L_7272885_INS [dm3] 3L_7279785_INS [dm6]	A	ACTAACTTAAAATCT...	1.647e^-4	0.99	INTRON unc-13-4A
3L	7272887	3L_7272887_SNP [dm3] 3L_7279787_SNP [dm6]	A	G	1.647e^-4	0.99	INTRON unc-13-4A
3L	7272895	3L_7272895_SNP [dm3] 3L_7279795_SNP [dm6]	A	T	1.647e^-4	0.99	INTRON unc-13-4A
3L	7272898	3L_7272898_SNP [dm3] 3L_7279798_SNP [dm6]	C	T	1.648e^-4	0.99	INTRON unc-13-4A
X	3307656	X_3307656_SNP [dm3] X_3413623_SNP [dm6]	T	C	1.650e^-4	0.99	INTRON CR44999 & 1 other
X	3307677	X_3307677_SNP [dm3] X_3413644_SNP [dm6]	A	C	1.650e^-4	0.99	INTRON CR44999 & 1 other
2R	16101288	2R_16101288_SNP [dm3] 2R_20213783_SNP [dm6]	T	C	1.654e^-4	0.99	INTERGENIC
2L	3050309	2L_3050309_SNP [dm3] 2L_3050309_SNP [dm6]	C	T	1.657e^-4	0.99	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12584261	2R_12584261_SNP [dm3] 2R_16696756_SNP [dm6]	C	T	1.659e^-4	0.99	INTRON CG30463
3R	23745760	3R_23745760_SNP [dm3] 3R_27920038_SNP [dm6]	T	C	1.659e^-4	0.99	SYNONYMOUS_CODING CG12259 UPSTREAM CG33213	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	5885755	3R_5885755_SNP [dm3] 3R_10060033_SNP [dm6]	C	G	1.676e^-4	0.99	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
3L	9864148	3L_9864148_SNP [dm3] 3L_9871048_SNP [dm6]	A	T	1.680e^-4	0.99	DOWNSTREAM CG8108 INTERGENIC
X	8725587	X_8725587_SNP [dm3] X_8831554_SNP [dm6]	A	T	1.682e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12202366	3L_12202366_DEL [dm3] 3L_12209266_DEL [dm6]	TAT	T	1.694e^-4	0.99	UTR_3_PRIME app INTRON app
2L	12586683	2L_12586683_SNP [dm3] 2L_12586683_SNP [dm6]	C	A	1.695e^-4	0.99	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2433474	3L_2433474_SNP [dm3] 3L_2433474_SNP [dm6]	C	T	1.698e^-4	0.99	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3421444	3R_3421444_SNP [dm3] 3R_7595722_SNP [dm6]	C	T	1.703e^-4	0.99	INTRON CG34127
2L	3241011	2L_3241011_SNP [dm3] 2L_3241011_SNP [dm6]	C	G	1.704e^-4	0.99	INTERGENIC
2L	12586627	2L_12586627_SNP [dm3] 2L_12586627_SNP [dm6]	T	A	1.708e^-4	0.99	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	5836062	2R_5836062_SNP [dm3] 2R_9948557_SNP [dm6]	T	G	1.711e^-4	0.99	INTRON Mef2
3L	7272889	3L_7272889_SNP [dm3] 3L_7279789_SNP [dm6]	T	C	1.736e^-4	0.99	INTRON unc-13-4A
X	8725584	X_8725584_SNP [dm3] X_8831551_SNP [dm6]	C	G	1.738e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19050977	X_19050977_SNP [dm3] X_19156944_SNP [dm6]	T	C	1.744e^-4	0.99	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
3L	7272892	3L_7272892_SNP [dm3] 3L_7279792_SNP [dm6]	C	A	1.745e^-4	0.99	INTRON unc-13-4A
3L	12591748	3L_12591748_INS [dm3] 3L_12598648_INS [dm6]	A	AC	1.757e^-4	0.99	INTERGENIC
2L	16228564	2L_16228564_SNP [dm3] 2L_16228564_SNP [dm6]	T	A	1.764e^-4	0.99	INTERGENIC
2L	735632	2L_735632_SNP [dm3] 2L_735632_SNP [dm6]	G	A	1.773e^-4	0.99	INTERGENIC
X	8725582	X_8725582_SNP [dm3] X_8831549_SNP [dm6]	C	T	1.781e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9585103	X_9585103_SNP [dm3] X_9691070_SNP [dm6]	A	G	1.783e^-4	0.99	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21062765	X_21062765_SNP [dm3] X_21191738_SNP [dm6]	T	A	1.788e^-4	0.99	INTERGENIC	transposable element FlyBase
3L	13980447	3L_13980447_SNP [dm3] 3L_13987347_SNP [dm6]	T	G	1.791e^-4	0.99	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
X	6147430	X_6147430_SNP [dm3] X_6253397_SNP [dm6]	C	T	1.802e^-4	0.99	INTRON Rbcn-3A
3R	12928947	3R_12928947_SNP [dm3] 3R_17103225_SNP [dm6]	C	T	1.803e^-4	0.99	INTRON cher
3L	17257477	3L_17257477_SNP [dm3] 3L_17264377_SNP [dm6]	T	C	1.822e^-4	0.99	UPSTREAM CG13723 DOWNSTREAM CR43870 INTERGENIC
2R	9808191	2R_9808191_SNP [dm3] 2R_13920686_SNP [dm6]	C	T	1.837e^-4	0.99	INTRON shot
2L	4291294	2L_4291294_SNP [dm3] 2L_4291294_SNP [dm6]	C	T	1.843e^-4	0.99	INTRON tutl
3L	4598024	3L_4598024_SNP [dm3] 3L_4598024_SNP [dm6]	G	A	1.852e^-4	0.99	INTRON Src64B
3L	2552718	3L_2552718_SNP [dm3] 3L_2552718_SNP [dm6]	T	A	1.863e^-4	0.99	INTRON Spn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	19675750	2L_19675750_SNP [dm3] 2L_19675750_SNP [dm6]	T	A	1.867e^-4	0.99	INTRON Lar
3R	13976372	3R_13976372_SNP [dm3] 3R_18150650_SNP [dm6]	C	T	1.870e^-4	0.99	INTERGENIC
3R	10040301	3R_10040301_SNP [dm3] 3R_14214579_SNP [dm6]	A	G	1.877e^-4	0.99	UTR_5_PRIME Dop1R1 DOWNSTREAM CG9649
X	19050966	X_19050966_SNP [dm3] X_19156933_SNP [dm6]	C	T	1.882e^-4	0.99	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
3R	12926544	3R_12926544_SNP [dm3] 3R_17100822_SNP [dm6]	C	T	1.886e^-4	0.99	INTRON cher
2L	17256795	2L_17256795_SNP [dm3] 2L_17256795_SNP [dm6]	A	T	1.888e^-4	0.99	INTRON beat-IIIc
3R	26091725	3R_26091725_SNP [dm3] 3R_30266003_SNP [dm6]	G	C	1.890e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4215014	3L_4215014_SNP [dm3] 3L_4215014_SNP [dm6]	T	C	1.891e^-4	0.99	UPSTREAM Cpr64Ad INTRON CG43367
3L	10647716	3L_10647716_SNP [dm3] 3L_10654616_SNP [dm6]	T	G	1.895e^-4	0.99	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
3L	17578034	3L_17578034_SNP [dm3] 3L_17584934_SNP [dm6]	G	A	1.910e^-4	0.99	INTRON Eip74EF
2L	6735375	2L_6735375_SNP [dm3] 2L_6735375_SNP [dm6]	A	C	1.913e^-4	0.99	SYNONYMOUS_CODING TTLL3B DOWNSTREAM TTLL3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	6835671	3L_6835671_SNP [dm3] 3L_6842571_SNP [dm6]	C	G	1.916e^-4	0.99	INTERGENIC
3L	10648706	3L_10648706_SNP [dm3] 3L_10655606_SNP [dm6]	T	A	1.916e^-4	0.99	INTRON CG32066
2L	15388425	2L_15388425_SNP [dm3] 2L_15388425_SNP [dm6]	T	G	1.921e^-4	0.99	INTERGENIC
3L	4614069	3L_4614069_SNP [dm3] 3L_4614069_SNP [dm6]	T	A	1.923e^-4	0.99	UPSTREAM Src64B INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	1538887	3L_1538887_SNP [dm3] 3L_1538887_SNP [dm6]	A	G	1.932e^-4	0.99	SYNONYMOUS_CODING CG7852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17578944	X_17578944_SNP [dm3] X_17684911_SNP [dm6]	C	T	1.938e^-4	0.99	INTRON chas
2R	6386520	2R_6386520_SNP [dm3] 2R_10499015_SNP [dm6]	A	T	1.943e^-4	0.99	INTRON lola
3R	24084026	3R_24084026_SNP [dm3] 3R_28258304_SNP [dm6]	T	C	1.943e^-4	0.99	INTERGENIC
3L	2431983	3L_2431983_SNP [dm3] 3L_2431983_SNP [dm6]	G	A	1.945e^-4	0.99	INTRON CG45186
3L	4598033	3L_4598033_SNP [dm3] 3L_4598033_SNP [dm6]	C	T	1.946e^-4	0.99	INTRON Src64B
3L	11430006	3L_11430006_SNP [dm3] 3L_11436906_SNP [dm6]	T	G	1.948e^-4	0.99	DOWNSTREAM CR44548 INTERGENIC
3R	24084025	3R_24084025_SNP [dm3] 3R_28258303_SNP [dm6]	A	G	1.949e^-4	0.99	INTERGENIC
3L	14327289	3L_14327289_SNP [dm3] 3L_14334189_SNP [dm6]	G	A	1.957e^-4	0.99	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9793063	2L_9793063_SNP [dm3] 2L_9793063_SNP [dm6]	C	T	1.975e^-4	0.99	SPLICE_SITE_DONOR CG13123 UTR_5_PRIME CG13123 DOWNSTREAM nAChRalpha6 INTRON CG13123	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8549107	2R_8549107_SNP [dm3] 2R_12661602_SNP [dm6]	G	A	1.975e^-4	0.99	UTR_5_PRIME nemy INTRON nemy
X	19050971	X_19050971_SNP [dm3] X_19156938_SNP [dm6]	G	A	1.978e^-4	0.99	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
2R	10631855	2R_10631855_SNP [dm3] 2R_14744350_SNP [dm6]	T	C	1.979e^-4	0.99	INTRON CG12858
2L	5349794	2L_5349794_SNP [dm3] 2L_5349794_SNP [dm6]	A	T	1.984e^-4	0.99	INTRON nompC
3L	19016289	3L_19016289_SNP [dm3] 3L_19023189_SNP [dm6]	G	T	1.986e^-4	0.99	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	13919195	2L_13919195_SNP [dm3] 2L_13919195_SNP [dm6]	A	T	2.001e^-4	0.99	INTRON Ance-3
2R	17815163	2R_17815163_SNP [dm3] 2R_21927658_SNP [dm6]	T	A	2.002e^-4	0.99	INTRON Fili
3L	7243301	3L_7243301_SNP [dm3] 3L_7250201_SNP [dm6]	T	C	2.006e^-4	0.99	UPSTREAM Cdc27 & 1 other DOWNSTREAM CG14830 INTRON MED4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	15286908	2L_15286908_SNP [dm3] 2L_15286908_SNP [dm6]	T	C	2.029e^-4	0.99	DOWNSTREAM CG15263 INTERGENIC
3L	9970786	3L_9970786_DEL [dm3] 3L_9977686_DEL [dm6]	CCAAC	C	2.032e^-4	0.99	INTRON dpr6
2L	12278959	2L_12278959_SNP [dm3] 2L_12278959_SNP [dm6]	T	C	2.038e^-4	0.99	INTRON aret
3L	20243681	3L_20243681_SNP [dm3] 3L_20250581_SNP [dm6]	G	A	2.047e^-4	0.99	INTRON rdgC
3R	11145401	3R_11145401_SNP [dm3] 3R_15319679_SNP [dm6]	C	T	2.049e^-4	0.99	SYNONYMOUS_CODING CG6276 UPSTREAM CG44040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7272823	3L_7272823_SNP [dm3] 3L_7279723_SNP [dm6]	G	C	2.060e^-4	0.99	INTRON unc-13-4A
X	9751606	X_9751606_SNP [dm3] X_9857573_SNP [dm6]	C	T	2.065e^-4	0.99	INTERGENIC
3R	5646280	3R_5646280_SNP [dm3] 3R_9820558_SNP [dm6]	A	G	2.071e^-4	0.99	UTR_3_PRIME CG42857 UPSTREAM CG9458
2L	13919183	2L_13919183_SNP [dm3] 2L_13919183_SNP [dm6]	C	T	2.077e^-4	0.99	INTRON Ance-3
3R	17803196	3R_17803196_INS [dm3] 3R_21977474_INS [dm6]	A	TG	2.077e^-4	0.99	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl
3L	7272926	3L_7272926_MNP [dm3] 3L_7279826_MNP [dm6]	CAA	TTG	2.097e^-4	0.99	INTRON unc-13-4A
2L	327329	2L_327329_SNP [dm3] 2L_327329_SNP [dm6]	G	A	2.102e^-4	0.99	DOWNSTREAM CG43755 INTRON Plc21C & 1 other
3L	3134872	3L_3134872_SNP [dm3] 3L_3134872_SNP [dm6]	G	T	2.109e^-4	0.99	UPSTREAM CG11537 INTRON CG11537
2R	8463699	2R_8463699_SNP [dm3] 2R_12576194_SNP [dm6]	A	G	2.111e^-4	0.99	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
3L	9866577	3L_9866577_SNP [dm3] 3L_9873477_SNP [dm6]	C	T	2.119e^-4	0.99	INTERGENIC
2R	14514841	2R_14514841_SNP [dm3] 2R_18627336_SNP [dm6]	G	C	2.140e^-4	0.99	SYNONYMOUS_CODING Sec6 UPSTREAM Eip55E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3L	1533743	3L_1533743_SNP [dm3] 3L_1533743_SNP [dm6]	T	C	2.144e^-4	0.99	SYNONYMOUS_CODING CG12090	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6147265	X_6147265_SNP [dm3] X_6253232_SNP [dm6]	G	A	2.147e^-4	0.99	INTRON Rbcn-3A
3L	7272804	3L_7272804_SNP [dm3] 3L_7279704_SNP [dm6]	C	T	2.154e^-4	0.99	INTRON unc-13-4A
3L	2372481	3L_2372481_SNP [dm3] 3L_2372481_SNP [dm6]	A	T	2.161e^-4	0.99	UPSTREAM CG1317 DOWNSTREAM mRpL23 INTRON CG8993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	10939972	3R_10939972_SNP [dm3] 3R_15114250_SNP [dm6]	G	A	2.172e^-4	0.99	INTRON CG42788
X	6833821	X_6833821_SNP [dm3] X_6939788_SNP [dm6]	A	T	2.174e^-4	0.99	INTRON CG14431
3R	11028545	3R_11028545_SNP [dm3] 3R_15202823_SNP [dm6]	G	T	2.176e^-4	0.99	UTR_3_PRIME CG42542 DOWNSTREAM Spn88Ea
3R	24578266	3R_24578266_SNP [dm3] 3R_28752544_SNP [dm6]	T	C	2.176e^-4	0.99	UPSTREAM CG10000 INTERGENIC
3L	604643	3L_604643_SNP [dm3] 3L_604643_SNP [dm6]	T	G	2.192e^-4	0.99	UPSTREAM CG13893 DOWNSTREAM Reg-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2L	1563833	2L_1563833_SNP [dm3] 2L_1563833_SNP [dm6]	A	G	2.214e^-4	0.99	INTRON haf	TF binding site mE1_TFBS_inv
3L	15491062	3L_15491062_SNP [dm3] 3L_15497962_SNP [dm6]	A	C	2.221e^-4	0.99	UTR_3_PRIME CG13455 UPSTREAM CG7276 & 1 other
X	19050983	X_19050983_SNP [dm3] X_19156950_SNP [dm6]	C	G	2.226e^-4	0.99	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
2L	1631289	2L_1631289_SNP [dm3] 2L_1631289_SNP [dm6]	T	C	2.235e^-4	0.99	INTERGENIC
2L	14693567	2L_14693567_SNP [dm3] 2L_14693567_SNP [dm6]	A	C	2.237e^-4	0.99	INTERGENIC
3R	24783370	3R_24783370_SNP [dm3] 3R_28957648_SNP [dm6]	C	G	2.248e^-4	0.99	INTRON CG14521
3R	3610125	3R_3610125_SNP [dm3] 3R_7784403_SNP [dm6]	A	G	2.255e^-4	0.99	SYNONYMOUS_CODING CG18745 UPSTREAM CG18747	TF binding site mE1_TFBS_HSA
3R	12928526	3R_12928526_SNP [dm3] 3R_17102804_SNP [dm6]	G	A	2.255e^-4	0.99	INTRON cher
3L	8883056	3L_8883056_SNP [dm3] 3L_8889956_SNP [dm6]	G	A	2.257e^-4	0.99	UTR_3_PRIME dally
X	6149817	X_6149817_SNP [dm3] X_6255784_SNP [dm6]	G	T	2.262e^-4	0.99	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12570579	3R_12570579_DEL [dm3] 3R_16744857_DEL [dm6]	AAACAC	A	2.265e^-4	0.99	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1577386	2R_1577386_SNP [dm3] 2R_5689881_SNP [dm6]	T	C	2.267e^-4	0.99	INTRON scaf
3R	12928681	3R_12928681_SNP [dm3] 3R_17102959_SNP [dm6]	G	T	2.276e^-4	0.99	INTRON cher
2L	14456227	2L_14456227_SNP [dm3] 2L_14456227_SNP [dm6]	G	A	2.280e^-4	0.99	UPSTREAM CR44730 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
X	19050978	X_19050978_SNP [dm3] X_19156945_SNP [dm6]	A	C	2.287e^-4	0.99	INTRON RhoGAP18B	TF binding site mE1_TFBS_zfh1
2L	14456241	2L_14456241_SNP [dm3] 2L_14456241_SNP [dm6]	T	G	2.298e^-4	0.99	UPSTREAM CR44730 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
2R	6758075	2R_6758075_SNP [dm3] 2R_10870570_SNP [dm6]	T	A	2.301e^-4	0.99	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	844194	3L_844194_SNP [dm3] 3L_844194_SNP [dm6]	C	T	2.301e^-4	0.99	UTR_5_PRIME CG13889 UPSTREAM CG13889 DOWNSTREAM Gr61a	TF binding site mE1_TFBS_chinmo
3L	16713572	3L_16713572_SNP [dm3] 3L_16720472_SNP [dm6]	C	G	2.309e^-4	0.99	NON_SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_chinmo
2L	3233453	2L_3233453_SNP [dm3] 2L_3233453_SNP [dm6]	C	A	2.316e^-4	0.99	INTERGENIC
2R	6642382	2R_6642382_SNP [dm3] 2R_10754877_SNP [dm6]	A	C	2.317e^-4	0.99	INTRON CG33144	TF binding site mE1_TFBS_chinmo
3L	6050460	3L_6050460_SNP [dm3] 3L_6057360_SNP [dm6]	T	C	2.319e^-4	0.99	DOWNSTREAM tan INTERGENIC
2L	18316805	2L_18316805_SNP [dm3] 2L_18316805_SNP [dm6]	T	C	2.326e^-4	0.99	INTERGENIC
3L	9884629	3L_9884629_SNP [dm3] 3L_9891529_SNP [dm6]	C	T	2.330e^-4	0.99	SYNONYMOUS_CODING CalpB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4636064	3L_4636064_SNP [dm3] 3L_4636064_SNP [dm6]	A	T	2.337e^-4	0.99	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3L	2433248	3L_2433248_SNP [dm3] 3L_2433248_SNP [dm6]	T	G	2.342e^-4	0.99	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7056349	X_7056349_SNP [dm3] X_7162316_SNP [dm6]	T	A	2.344e^-4	0.99	INTRON CG9650	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	6064732	3L_6064732_SNP [dm3] 3L_6071632_SNP [dm6]	T	A	2.352e^-4	0.99	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	8177177	2R_8177177_SNP [dm3] 2R_12289672_SNP [dm6]	A	G	2.359e^-4	0.99	INTRON CG42700
2R	12584101	2R_12584101_SNP [dm3] 2R_16696596_SNP [dm6]	G	T	2.374e^-4	0.99	INTRON CG30463
3L	7272847	3L_7272847_SNP [dm3] 3L_7279747_SNP [dm6]	G	T	2.383e^-4	0.99	INTRON unc-13-4A
2R	19562318	2R_19562318_SNP [dm3] 2R_23674795_SNP [dm6]	C	T	2.389e^-4	0.99	INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9282473	2L_9282473_SNP [dm3] 2L_9282473_SNP [dm6]	T	G	2.389e^-4	0.99	INTRON Ggamma30A
2R	6764406	2R_6764406_SNP [dm3] 2R_10876901_SNP [dm6]	T	G	2.399e^-4	0.99	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	15959414	2R_15959414_SNP [dm3] 2R_20071909_SNP [dm6]	A	G	2.434e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17578802	X_17578802_SNP [dm3] X_17684769_SNP [dm6]	A	C	2.440e^-4	0.99	INTRON chas
3R	25467181	3R_25467181_SNP [dm3] 3R_29641459_SNP [dm6]	G	C	2.446e^-4	0.99	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26087666	3R_26087666_SNP [dm3] 3R_30261944_SNP [dm6]	A	G	2.455e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	3563991	3R_3563991_SNP [dm3] 3R_7738269_SNP [dm6]	G	C	2.465e^-4	0.99	DOWNSTREAM CG43254 INTERGENIC
2R	14859377	2R_14859377_SNP [dm3] 2R_18971872_SNP [dm6]	C	A	2.472e^-4	0.99	SYNONYMOUS_CODING CG15107 UPSTREAM prod & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3256992	2R_3256992_SNP [dm3] 2R_7369487_SNP [dm6]	T	C	2.487e^-4	0.99	INTRON Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12325265	X_12325265_SNP [dm3] X_12431232_SNP [dm6]	C	A	2.495e^-4	0.99	UPSTREAM Pkcdelta INTERGENIC
X	4858282	X_4858282_SNP [dm3] X_4964249_SNP [dm6]	C	T	2.497e^-4	0.99	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1566390	2L_1566390_SNP [dm3] 2L_1566390_SNP [dm6]	A	T	2.499e^-4	0.99	INTRON haf
2L	1566391	2L_1566391_SNP [dm3] 2L_1566391_SNP [dm6]	C	T	2.499e^-4	0.99	INTRON haf
2L	1566596	2L_1566596_SNP [dm3] 2L_1566596_SNP [dm6]	A	G	2.499e^-4	0.99	INTRON haf
2L	16433604	2L_16433604_SNP [dm3] 2L_16433604_SNP [dm6]	T	C	2.507e^-4	0.99	INTRON CG5888
2R	7176440	2R_7176440_SNP [dm3] 2R_11288935_SNP [dm6]	T	G	2.515e^-4	0.99	DOWNSTREAM CG18335 INTRON fbl6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14665722	3L_14665722_DEL [dm3] 3L_14672622_DEL [dm6]	ATTA	A	2.529e^-4	0.99	UPSTREAM ome & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	23976395	3R_23976395_DEL [dm3] 3R_28150673_DEL [dm6]	AGGAA	GC	2.539e^-4	0.99	INTRON CG34354
2R	12583235	2R_12583235_SNP [dm3] 2R_16695730_SNP [dm6]	C	A	2.541e^-4	0.99	INTRON CG30463
2L	9792378	2L_9792378_SNP [dm3] 2L_9792378_SNP [dm6]	G	T	2.548e^-4	0.99	SYNONYMOUS_CODING CG13123 DOWNSTREAM CG4036 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15886106	X_15886106_SNP [dm3] X_15992073_SNP [dm6]	A	G	2.554e^-4	0.99	UPSTREAM exd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13804079	2R_13804079_INS [dm3] 2R_17916574_INS [dm6]	T	TA	2.559e^-4	0.99	INTRON Elk
3L	10648561	3L_10648561_SNP [dm3] 3L_10655461_SNP [dm6]	T	A	2.562e^-4	0.99	INTRON CG32066
2L	6735381	2L_6735381_SNP [dm3] 2L_6735381_SNP [dm6]	T	C	2.563e^-4	0.99	SYNONYMOUS_CODING TTLL3B DOWNSTREAM TTLL3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9991797	3L_9991797_SNP [dm3] 3L_9998697_SNP [dm6]	C	T	2.587e^-4	0.99	INTRON dpr6
3R	22742884	3R_22742884_SNP [dm3] 3R_26917162_SNP [dm6]	T	G	2.588e^-4	0.99	INTRON sda
2L	13700802	2L_13700802_SNP [dm3] 2L_13700802_SNP [dm6]	C	G	2.594e^-4	0.99	INTRON CG31814
2L	2845179	2L_2845179_SNP [dm3] 2L_2845179_SNP [dm6]	T	C	2.604e^-4	0.99	NON_SYNONYMOUS_CODING CG18557 UPSTREAM CG18558 DOWNSTREAM CG3117
2R	6793261	2R_6793261_SNP [dm3] 2R_10905756_SNP [dm6]	G	A	2.606e^-4	0.99	DOWNSTREAM CG12943 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	18318249	2L_18318249_SNP [dm3] 2L_18318249_SNP [dm6]	T	A	2.608e^-4	0.99	INTERGENIC
2R	10631815	2R_10631815_SNP [dm3] 2R_14744310_SNP [dm6]	A	C	2.619e^-4	0.99	INTRON CG12858
2R	10631819	2R_10631819_SNP [dm3] 2R_14744314_SNP [dm6]	A	T	2.619e^-4	0.99	INTRON CG12858
2R	10631821	2R_10631821_SNP [dm3] 2R_14744316_SNP [dm6]	A	T	2.619e^-4	0.99	INTRON CG12858
2L	19624089	2L_19624089_SNP [dm3] 2L_19624089_SNP [dm6]	A	C	2.626e^-4	0.99	INTRON Lar
2R	4710608	2R_4710608_SNP [dm3] 2R_8823103_SNP [dm6]	G	A	2.642e^-4	0.99	INTRON sns	TF binding site mE1_TFBS_chinmo
3L	1282724	3L_1282724_SNP [dm3] 3L_1282724_SNP [dm6]	A	G	2.647e^-4	0.99	INTRON CG32333
X	5050393	X_5050393_SNP [dm3] X_5156360_SNP [dm6]	T	G	2.648e^-4	0.99	INTRON rg & 1 other
3R	3679512	3R_3679512_SNP [dm3] 3R_7853790_SNP [dm6]	C	A	2.649e^-4	0.99	UTR_3_PRIME CG34384
3R	5885770	3R_5885770_SNP [dm3] 3R_10060048_SNP [dm6]	G	T	2.654e^-4	0.99	UPSTREAM Npc2c DOWNSTREAM CR45205 INTERGENIC
3R	20853779	3R_20853779_SNP [dm3] 3R_25028057_SNP [dm6]	T	C	2.661e^-4	0.99	INTRON Hr96
X	5575052	X_5575052_SNP [dm3] X_5681019_SNP [dm6]	T	C	2.668e^-4	0.99	SYNONYMOUS_CODING Gr5a EXON CR44958
3L	914661	3L_914661_SNP [dm3] 3L_914661_SNP [dm6]	A	T	2.671e^-4	0.99	INTRON Glut1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16534869	X_16534869_SNP [dm3] X_16640836_SNP [dm6]	C	A	2.684e^-4	0.99	UPSTREAM mthl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	24346974	3R_24346974_SNP [dm3] 3R_28521252_SNP [dm6]	A	G	2.690e^-4	0.99	SYNONYMOUS_CODING Ppn UPSTREAM CG31051
X	10783297	X_10783297_DEL [dm3] X_10889264_DEL [dm6]	TT	T	2.691e^-4	0.99	INTRON Ork1
2L	18615659	2L_18615659_SNP [dm3] 2L_18615659_SNP [dm6]	G	C	2.698e^-4	0.99	NON_SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20243672	3L_20243672_SNP [dm3] 3L_20250572_SNP [dm6]	C	T	2.699e^-4	0.99	INTRON rdgC
3R	20853780	3R_20853780_SNP [dm3] 3R_25028058_SNP [dm6]	C	A	2.703e^-4	0.99	INTRON Hr96
2L	3023768	2L_3023768_SNP [dm3] 2L_3023768_SNP [dm6]	T	C	2.706e^-4	0.99	SYNONYMOUS_CODING CG3542 UPSTREAM alpha4GT1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6764550	2R_6764550_SNP [dm3] 2R_10877045_SNP [dm6]	G	C	2.709e^-4	0.99	NON_SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9780068	2L_9780068_SNP [dm3] 2L_9780068_SNP [dm6]	C	T	2.712e^-4	0.99	INTERGENIC
X	1574669	X_1574669_INS [dm3] X_1680636_INS [dm6]	A	AT	2.715e^-4	0.99	UPSTREAM CG14797 INTRON CG32809
X	4972494	X_4972494_SNP [dm3] X_5078461_SNP [dm6]	G	A	2.718e^-4	0.99	SYNONYMOUS_CODING CG32767	TF binding site mE1_TFBS_chinmo
2R	14513507	2R_14513507_SNP [dm3] 2R_18626002_SNP [dm6]	G	T	2.719e^-4	0.99	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
2R	14309928	2R_14309928_DEL [dm3] 2R_18422423_DEL [dm6]	TAAAG	T	2.728e^-4	0.99	UPSTREAM CG5174 INTRON CG5174
2L	18615686	2L_18615686_SNP [dm3] 2L_18615686_SNP [dm6]	A	C	2.731e^-4	0.99	NON_SYNONYMOUS_CODING CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17182699	2R_17182699_SNP [dm3] 2R_21295194_SNP [dm6]	A	G	2.733e^-4	0.99	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	22267907	3R_22267907_SNP [dm3] 3R_26442185_SNP [dm6]	C	T	2.740e^-4	0.99	INTRON tx
3L	4598026	3L_4598026_SNP [dm3] 3L_4598026_SNP [dm6]	T	C	2.741e^-4	0.99	INTRON Src64B
X	12006270	X_12006270_SNP [dm3] X_12112237_SNP [dm6]	A	T	2.742e^-4	0.99	SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other	TF binding site mE1_TFBS_sens
3R	6808915	3R_6808915_SNP [dm3] 3R_10983193_SNP [dm6]	G	A	2.743e^-4	0.99	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15709360	3R_15709360_SNP [dm3] 3R_19883638_SNP [dm6]	C	T	2.746e^-4	0.99	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad
2R	8463654	2R_8463654_SNP [dm3] 2R_12576149_SNP [dm6]	G	A	2.752e^-4	0.99	SYNONYMOUS_CODING Sin3A UTR_3_PRIME Sin3A DOWNSTREAM ClC-b
X	3421141	X_3421141_INS [dm3] X_3527108_INS [dm6]	T	TA	2.755e^-4	0.99	INTRON CG32791
3L	17589206	3L_17589206_DEL [dm3] 3L_17596106_DEL [dm6]	GACTCCTCG	G	2.756e^-4	0.99	INTRON Eip74EF
3L	13980486	3L_13980486_SNP [dm3] 3L_13987386_SNP [dm6]	C	T	2.762e^-4	0.99	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
2R	19247655	2R_19247655_SNP [dm3] 2R_23360132_SNP [dm6]	A	G	2.762e^-4	0.99	SYNONYMOUS_CODING CG34424 DOWNSTREAM vir & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3452550	3L_3452550_SNP [dm3] 3L_3452550_SNP [dm6]	A	G	2.763e^-4	0.99	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6808895	3R_6808895_SNP [dm3] 3R_10983173_SNP [dm6]	A	G	2.769e^-4	0.99	INTRON CG34114	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7387497	3L_7387497_SNP [dm3] 3L_7394397_SNP [dm6]	T	C	2.772e^-4	0.99	INTRON CG8563	TF binding site mE1_TFBS_cad
2R	7054527	2R_7054527_INS [dm3] 2R_11167022_INS [dm6]	A	ACGG	2.774e^-4	0.99	INTRON shn & 1 other
2R	7054529	2R_7054529_INS [dm3] 2R_11167024_INS [dm6]	C	CGGACAGGCGG...	2.774e^-4	0.99	INTRON shn & 1 other
3L	7333929	3L_7333929_SNP [dm3] 3L_7340829_SNP [dm6]	C	T	2.786e^-4	0.99	INTRON lark	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8721294	X_8721294_SNP [dm3] X_8827261_SNP [dm6]	A	G	2.797e^-4	0.99	INTERGENIC
3L	8997366	3L_8997366_SNP [dm3] 3L_9004266_SNP [dm6]	A	C	2.797e^-4	0.99	UPSTREAM Doc3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8786463	3R_8786463_DEL [dm3] 3R_12960741_DEL [dm6]	ACTAA	A	2.805e^-4	0.99	UPSTREAM Spc25 INTRON grsm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4265520	2L_4265520_SNP [dm3] 2L_4265520_SNP [dm6]	T	C	2.817e^-4	0.99	INTERGENIC
2R	6764412	2R_6764412_SNP [dm3] 2R_10876907_SNP [dm6]	A	C	2.822e^-4	0.99	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6764416	2R_6764416_SNP [dm3] 2R_10876911_SNP [dm6]	C	T	2.822e^-4	0.99	SYNONYMOUS_CODING nclb DOWNSTREAM Taf5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	7518304	3R_7518304_SNP [dm3] 3R_11692582_SNP [dm6]	G	A	2.823e^-4	0.99	UPSTREAM CG18765 DOWNSTREAM Fer3 INTERGENIC
X	4859846	X_4859846_SNP [dm3] X_4965813_SNP [dm6]	A	C	2.825e^-4	0.99	INTRON CR44833	regulatory region REDfly_CRMs
3L	11384309	3L_11384309_SNP [dm3] 3L_11391209_SNP [dm6]	A	C	2.826e^-4	0.99	INTERGENIC
3R	7335507	3R_7335507_DEL [dm3] 3R_11509785_DEL [dm6]	TT	T	2.827e^-4	0.99	INTERGENIC
X	17547218	X_17547218_SNP [dm3] X_17653185_SNP [dm6]	C	T	2.830e^-4	0.99	SYNONYMOUS_CODING IntS2 UPSTREAM RhoGAPp190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	1569140	X_1569140_DEL [dm3] X_1675107_DEL [dm6]	ATG	A	2.837e^-4	0.99	UTR_3_PRIME CG32809 DOWNSTREAM CG32809
2L	14693633	2L_14693633_SNP [dm3] 2L_14693633_SNP [dm6]	G	A	2.842e^-4	0.99	INTERGENIC
X	1558287	X_1558287_SNP [dm3] X_1664254_SNP [dm6]	A	G	2.847e^-4	0.99	UTR_5_PRIME Mur2B UTR_3_PRIME br UPSTREAM dor	TF binding site BDTNP1_TFBS_dl
3L	16230092	3L_16230092_SNP [dm3] 3L_16236992_SNP [dm6]	T	A	2.848e^-4	0.99	UTR_3_PRIME l_3_72Dp UPSTREAM l_3_72Dr
2L	14693364	2L_14693364_SNP [dm3] 2L_14693364_SNP [dm6]	A	G	2.857e^-4	0.99	INTERGENIC
3L	9160592	3L_9160592_SNP [dm3] 3L_9167492_SNP [dm6]	A	T	2.865e^-4	0.99	INTRON Rdl
2L	9861233	2L_9861233_SNP [dm3] 2L_9861233_SNP [dm6]	C	A	2.870e^-4	0.99	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA
2R	9723501	2R_9723501_SNP [dm3] 2R_13835996_SNP [dm6]	A	C	2.899e^-4	0.99	UPSTREAM CG6337 & 1 other INTERGENIC
3R	25175644	3R_25175644_SNP [dm3] 3R_29349922_SNP [dm6]	G	A	2.902e^-4	0.99	INTERGENIC
3L	8848884	3L_8848884_SNP [dm3] 3L_8855784_SNP [dm6]	C	T	2.906e^-4	0.99	INTRON dally
2R	19215179	2R_19215179_SNP [dm3] 2R_23327656_SNP [dm6]	C	T	2.906e^-4	0.99	UPSTREAM CG30417 DOWNSTREAM CG9861 INTERGENIC
2L	3277545	2L_3277545_SNP [dm3] 2L_3277545_SNP [dm6]	T	A	2.914e^-4	0.99	NON_SYNONYMOUS_CODING CG3332 SPLICE_SITE_REGION CG3332	TF binding site mE1_TFBS_cad
2R	9687719	2R_9687719_SNP [dm3] 2R_13800214_SNP [dm6]	C	G	2.926e^-4	0.99	INTRON Cpr50Cb
X	1560800	X_1560800_SNP [dm3] X_1666767_SNP [dm6]	C	T	2.927e^-4	0.99	NON_SYNONYMOUS_CODING dor INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	7243277	3L_7243277_SNP [dm3] 3L_7250177_SNP [dm6]	T	G	2.941e^-4	0.99	UPSTREAM Cdc27 & 1 other DOWNSTREAM CG14830 INTRON MED4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	7056119	2L_7056119_SNP [dm3] 2L_7056119_SNP [dm6]	A	T	2.945e^-4	0.99	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	12649707	2L_12649707_SNP [dm3] 2L_12649707_SNP [dm6]	C	T	2.947e^-4	0.99	INTERGENIC
2R	8172290	2R_8172290_SNP [dm3] 2R_12284785_SNP [dm6]	T	A	2.963e^-4	0.99	INTRON CG42700
2L	7119434	2L_7119434_SNP [dm3] 2L_7119434_SNP [dm6]	T	G	2.970e^-4	0.99	INTRON Pvf3
2R	11293211	2R_11293211_SNP [dm3] 2R_15405706_SNP [dm6]	T	C	2.983e^-4	0.99	DOWNSTREAM CR45020 INTRON CG43729
3L	14152498	3L_14152498_SNP [dm3] 3L_14159398_SNP [dm6]	T	G	2.984e^-4	0.99	INTERGENIC	regulatory region REDfly_CRMs
2L	1566528	2L_1566528_SNP [dm3] 2L_1566528_SNP [dm6]	T	C	2.988e^-4	0.99	INTRON haf
3R	14465692	3R_14465692_DEL [dm3] 3R_18639970_DEL [dm6]	TAT	T	3.000e^-4	0.99	INTRON qin & 1 other
2R	19511830	2R_19511830_SNP [dm3] 2R_23624307_SNP [dm6]	T	C	3.005e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	3205794	3L_3205794_SNP [dm3] 3L_3205794_SNP [dm6]	G	A	3.018e^-4	0.99	SYNONYMOUS_CODING CG33160 UPSTREAM CG32277 INTRON gry	TF binding site mE1_TFBS_cad
3L	7272936	3L_7272936_SNP [dm3] 3L_7279836_SNP [dm6]	T	G	3.020e^-4	0.99	INTRON unc-13-4A
3L	18358947	3L_18358947_SNP [dm3] 3L_18365847_SNP [dm6]	C	T	3.025e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_cad
2L	8657219	2L_8657219_SNP [dm3] 2L_8657219_SNP [dm6]	G	T	3.030e^-4	0.99	INTRON Sema-1a
3L	15341046	3L_15341046_SNP [dm3] 3L_15347946_SNP [dm6]	A	G	3.030e^-4	0.99	INTERGENIC
3L	12807130	3L_12807130_SNP [dm3] 3L_12814030_SNP [dm6]	T	G	3.040e^-4	0.99	UPSTREAM CG42588 & 1 other DOWNSTREAM Sap130 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	2142905	3L_2142905_SNP [dm3] 3L_2142905_SNP [dm6]	T	A	3.041e^-4	0.99	INTRON zormin
2L	4296190	2L_4296190_SNP [dm3] 2L_4296190_SNP [dm6]	A	G	3.042e^-4	0.99	INTRON tutl
X	13990979	X_13990979_INS [dm3] X_14096946_INS [dm6]	C	CC	3.052e^-4	0.99	INTERGENIC
3R	26054425	3R_26054425_SNP [dm3] 3R_30228703_SNP [dm6]	C	T	3.055e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	18333222	2R_18333222_SNP [dm3] 2R_22445717_SNP [dm6]	C	T	3.056e^-4	0.99	INTERGENIC
2R	13432230	2R_13432230_SNP [dm3] 2R_17544725_SNP [dm6]	A	G	3.059e^-4	0.99	UPSTREAM cyp33 DOWNSTREAM CG43370 INTRON CG34194	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	12127395	2L_12127395_SNP [dm3] 2L_12127395_SNP [dm6]	G	A	3.068e^-4	0.99	SYNONYMOUS_CODING CG17211
2L	12912434	2L_12912434_SNP [dm3] 2L_12912434_SNP [dm6]	A	T	3.069e^-4	0.99	UPSTREAM ACXC INTERGENIC
2R	12541233	2R_12541233_SNP [dm3] 2R_16653728_SNP [dm6]	T	A	3.085e^-4	0.99	SYNONYMOUS_CODING Nach
3L	8691593	3L_8691593_SNP [dm3] 3L_8698493_SNP [dm6]	T	C	3.096e^-4	0.99	INTERGENIC
3L	17578035	3L_17578035_SNP [dm3] 3L_17584935_SNP [dm6]	G	A	3.103e^-4	0.99	INTRON Eip74EF
2L	16219218	2L_16219218_SNP [dm3] 2L_16219218_SNP [dm6]	G	T	3.104e^-4	0.99	INTERGENIC
2L	18615843	2L_18615843_SNP [dm3] 2L_18615843_SNP [dm6]	C	T	3.107e^-4	0.99	UTR_5_PRIME CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5775388	3R_5775388_SNP [dm3] 3R_9949666_SNP [dm6]	A	G	3.127e^-4	0.99	INTRON Glut4EF
2R	19628995	2R_19628995_SNP [dm3] 2R_23741472_SNP [dm6]	G	T	3.128e^-4	0.99	INTRON egl
3R	18588924	3R_18588924_SNP [dm3] 3R_22763202_SNP [dm6]	A	G	3.134e^-4	0.99	SYNONYMOUS_CODING CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4093899	2R_4093899_DEL [dm3] 2R_8206394_DEL [dm6]	TTAGGTACAGGCTGGCAC...	T	3.135e^-4	0.99	UPSTREAM CG14756 INTRON LRP1
2L	18220472	2L_18220472_SNP [dm3] 2L_18220472_SNP [dm6]	C	T	3.136e^-4	0.99	INTRON CG42750
2L	19157756	2L_19157756_SNP [dm3] 2L_19157756_SNP [dm6]	A	G	3.166e^-4	0.99	UPSTREAM brat DOWNSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9830164	3R_9830164_SNP [dm3] 3R_14004442_SNP [dm6]	C	T	3.171e^-4	0.99	INTRON rdx
2L	18244670	2L_18244670_SNP [dm3] 2L_18244670_SNP [dm6]	T	A	3.173e^-4	0.99	INTRON CG42750
3R	6812043	3R_6812043_SNP [dm3] 3R_10986321_SNP [dm6]	C	T	3.176e^-4	0.99	INTRON CG34114
2L	109129	2L_109129_SNP [dm3] 2L_109129_SNP [dm6]	G	T	3.189e^-4	0.99	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21787219	3L_21787219_SNP [dm3] 3L_21794119_SNP [dm6]	C	T	3.196e^-4	0.99	INTERGENIC
2L	7780423	2L_7780423_SNP [dm3] 2L_7780423_SNP [dm6]	T	C	3.200e^-4	0.99	SYNONYMOUS_CODING Uro
2R	18011655	2R_18011655_SNP [dm3] 2R_22124150_SNP [dm6]	C	T	3.205e^-4	0.99	SYNONYMOUS_CODING mei-S332 DOWNSTREAM GM130
3L	10648565	3L_10648565_SNP [dm3] 3L_10655465_SNP [dm6]	T	A	3.228e^-4	0.99	INTRON CG32066
2L	6857192	2L_6857192_SNP [dm3] 2L_6857192_SNP [dm6]	C	A	3.235e^-4	0.99	SYNONYMOUS_CODING l_2_k09022	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2R	15423922	2R_15423922_DEL [dm3] 2R_19536417_DEL [dm6]	CAATCATGC	C	3.235e^-4	0.99	INTRON sm	TF binding site BDTNP1_TFBS_twi
2L	18048276	2L_18048276_SNP [dm3] 2L_18048276_SNP [dm6]	G	A	3.243e^-4	0.99	INTRON rdo
3L	2472772	3L_2472772_SNP [dm3] 3L_2472772_SNP [dm6]	G	A	3.247e^-4	0.99	INTRON CG45186
2R	19575374	2R_19575374_SNP [dm3] 2R_23687851_SNP [dm6]	G	A	3.251e^-4	0.99	UTR_3_PRIME St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad
2L	13687540	2L_13687540_SNP [dm3] 2L_13687540_SNP [dm6]	G	A	3.260e^-4	0.99	SYNONYMOUS_CODING CG31814
2R	8207748	2R_8207748_SNP [dm3] 2R_12320243_SNP [dm6]	C	T	3.271e^-4	0.99	UPSTREAM CG13163 DOWNSTREAM CR44316 INTERGENIC
3R	9999215	3R_9999215_SNP [dm3] 3R_14173493_SNP [dm6]	A	G	3.272e^-4	0.99	UTR_3_PRIME Dop1R1
X	3307737	X_3307737_SNP [dm3] X_3413704_SNP [dm6]	A	C	3.275e^-4	0.99	INTRON CR44999 & 1 other
3L	8852084	3L_8852084_SNP [dm3] 3L_8858984_SNP [dm6]	C	G	3.276e^-4	0.99	INTRON dally	TF binding site BDTNP1_TFBS_da
2L	12586685	2L_12586685_INS [dm3] 2L_12586685_INS [dm6]	A	AAAGACA	3.278e^-4	0.99	UPSTREAM nub INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4737824	X_4737824_SNP [dm3] X_4843791_SNP [dm6]	G	A	3.283e^-4	0.99	INTRON CG42594
2L	6986941	2L_6986941_SNP [dm3] 2L_6986941_SNP [dm6]	G	A	3.302e^-4	0.99	DOWNSTREAM CR44326 INTRON uif
2R	12341827	2R_12341827_SNP [dm3] 2R_16454322_SNP [dm6]	C	T	3.304e^-4	0.99	INTERGENIC
X	14893012	X_14893012_INS [dm3] X_14998979_INS [dm6]	C	CCTGGTGATGGATC...	3.307e^-4	0.99	UTR_3_PRIME eag INTRON eag
3L	9176282	3L_9176282_SNP [dm3] 3L_9183182_SNP [dm6]	A	G	3.309e^-4	0.99	INTERGENIC
3L	6913131	3L_6913131_SNP [dm3] 3L_6920031_SNP [dm6]	T	C	3.310e^-4	0.99	INTERGENIC
2L	1566113	2L_1566113_SNP [dm3] 2L_1566113_SNP [dm6]	A	G	3.314e^-4	0.99	INTRON haf
2R	17590278	2R_17590278_SNP [dm3] 2R_21702773_SNP [dm6]	G	A	3.315e^-4	0.99	UTR_5_PRIME HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2R	17732016	2R_17732016_SNP [dm3] 2R_21844511_SNP [dm6]	C	G	3.317e^-4	0.99	INTERGENIC
2L	17343293	2L_17343293_SNP [dm3] 2L_17343293_SNP [dm6]	G	T	3.331e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18174061	2R_18174061_DEL [dm3] 2R_22286556_DEL [dm6]	CA	C	3.335e^-4	0.99	DOWNSTREAM dve INTERGENIC
2R	19247692	2R_19247692_SNP [dm3] 2R_23360169_SNP [dm6]	T	C	3.335e^-4	0.99	SYNONYMOUS_CODING CG34424 DOWNSTREAM vir & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2723784	2L_2723784_SNP [dm3] 2L_2723784_SNP [dm6]	C	T	3.349e^-4	0.99	INTERGENIC
3R	10499505	3R_10499505_SNP [dm3] 3R_14673783_SNP [dm6]	T	A	3.350e^-4	0.99	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
X	6122463	X_6122463_SNP [dm3] X_6228430_SNP [dm6]	T	C	3.356e^-4	0.99	INTRON CG14446	TF binding site mE1_TFBS_sens
3R	13976881	3R_13976881_SNP [dm3] 3R_18151159_SNP [dm6]	A	G	3.366e^-4	0.99	UPSTREAM CG14316 INTERGENIC
X	19350360	X_19350360_SNP [dm3] X_19456327_SNP [dm6]	G	C	3.368e^-4	0.99	INTRON kek5
2L	4794489	2L_4794489_SNP [dm3] 2L_4794489_SNP [dm6]	A	C	3.379e^-4	0.99	UPSTREAM CG3294 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17256791	2L_17256791_SNP [dm3] 2L_17256791_SNP [dm6]	A	T	3.395e^-4	0.99	INTRON beat-IIIc
3L	20000596	3L_20000596_SNP [dm3] 3L_20007496_SNP [dm6]	A	G	3.398e^-4	0.99	INTRON kug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_zfh1
3R	25068768	3R_25068768_SNP [dm3] 3R_29243046_SNP [dm6]	T	C	3.399e^-4	0.99	SYNONYMOUS_CODING CG31445
3L	4636042	3L_4636042_SNP [dm3] 3L_4636042_SNP [dm6]	T	C	3.401e^-4	0.99	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3L	6136614	3L_6136614_SNP [dm3] 3L_6143514_SNP [dm6]	T	G	3.408e^-4	0.99	NON_SYNONYMOUS_CODING Lcp65Ad	TF binding site BDTNP1_TFBS_da
2R	13737036	2R_13737036_SNP [dm3] 2R_17849531_SNP [dm6]	C	A	3.413e^-4	0.99	INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2R	1708624	2R_1708624_SNP [dm3] 2R_5821119_SNP [dm6]	T	A	3.425e^-4	0.99	INTRON dpr12	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13185286	3L_13185286_SNP [dm3] 3L_13192186_SNP [dm6]	G	T	3.425e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_cad
X	6251554	X_6251554_SNP [dm3] X_6357521_SNP [dm6]	C	T	3.425e^-4	0.99	INTRON kdn
3R	12931738	3R_12931738_SNP [dm3] 3R_17106016_SNP [dm6]	G	C	3.429e^-4	0.99	INTRON cher
2R	5837642	2R_5837642_SNP [dm3] 2R_9950137_SNP [dm6]	A	T	3.430e^-4	0.99	INTRON Mef2
2L	11330131	2L_11330131_INS [dm3] 2L_11330131_INS [dm6]	TG	CTAGC	3.467e^-4	0.99	INTERGENIC
X	13986642	X_13986642_SNP [dm3] X_14092609_SNP [dm6]	A	G	3.472e^-4	0.99	INTERGENIC
3R	14536372	3R_14536372_SNP [dm3] 3R_18710650_SNP [dm6]	A	G	3.474e^-4	0.99	INTRON VAChT & 1 other
X	15889159	X_15889159_SNP [dm3] X_15995126_SNP [dm6]	A	T	3.475e^-4	0.99	UTR_3_PRIME exd
2L	17343291	2L_17343291_SNP [dm3] 2L_17343291_SNP [dm6]	A	G	3.481e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19157766	2L_19157766_SNP [dm3] 2L_19157766_SNP [dm6]	T	C	3.494e^-4	0.99	UPSTREAM brat DOWNSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	735595	2L_735595_SNP [dm3] 2L_735595_SNP [dm6]	A	G	3.497e^-4	0.99	INTERGENIC
3L	16145008	3L_16145008_SNP [dm3] 3L_16151908_SNP [dm6]	G	A	3.513e^-4	0.99	INTRON CG5151
2R	16804952	2R_16804952_SNP [dm3] 2R_20917447_SNP [dm6]	A	G	3.518e^-4	0.99	INTRON Rx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	2603677	X_2603677_SNP [dm3] X_2709644_SNP [dm6]	T	C	3.538e^-4	0.99	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
3R	23976079	3R_23976079_SNP [dm3] 3R_28150357_SNP [dm6]	C	G	3.542e^-4	0.99	INTRON CG34354
X	9222171	X_9222171_SNP [dm3] X_9328138_SNP [dm6]	T	A	3.546e^-4	0.99	SYNONYMOUS_CODING CG34449 UTR_3_PRIME CG34449 DOWNSTREAM CG34450	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22605023	3R_22605023_SNP [dm3] 3R_26779301_SNP [dm6]	A	G	3.556e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2841205	2L_2841205_SNP [dm3] 2L_2841205_SNP [dm6]	A	G	3.564e^-4	0.99	NON_SYNONYMOUS_CODING CG2975 UPSTREAM CR45342
2L	6278129	2L_6278129_SNP [dm3] 2L_6278129_SNP [dm6]	A	G	3.570e^-4	0.99	INTRON Ddr
2L	19809236	2L_19809236_SNP [dm3] 2L_19809236_SNP [dm6]	A	C	3.577e^-4	0.99	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12915654	2L_12915654_SNP [dm3] 2L_12915654_SNP [dm6]	T	A	3.586e^-4	0.99	INTRON ACXC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12915655	2L_12915655_SNP [dm3] 2L_12915655_SNP [dm6]	A	T	3.586e^-4	0.99	INTRON ACXC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4096379	3L_4096379_SNP [dm3] 3L_4096379_SNP [dm6]	A	T	3.596e^-4	0.99	INTRON CG14995	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12053878	2L_12053878_SNP [dm3] 2L_12053878_SNP [dm6]	T	C	3.605e^-4	0.99	SYNONYMOUS_CODING JhI-21
X	1557007	X_1557007_SNP [dm3] X_1662974_SNP [dm6]	C	T	3.629e^-4	0.99	UTR_3_PRIME br INTRON Mur2B
3L	4636040	3L_4636040_SNP [dm3] 3L_4636040_SNP [dm6]	T	C	3.631e^-4	0.99	DOWNSTREAM axo INTRON axo	TF binding site mE1_TFBS_hkb
3R	25358938	3R_25358938_SNP [dm3] 3R_29533216_SNP [dm6]	G	T	3.634e^-4	0.99	INTERGENIC
3L	12574048	3L_12574048_SNP [dm3] 3L_12580948_SNP [dm6]	A	G	3.654e^-4	0.99	UTR_5_PRIME ara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24868942	3R_24868942_SNP [dm3] 3R_29043220_SNP [dm6]	C	G	3.657e^-4	0.99	INTRON Pkc98E
3R	7608806	3R_7608806_SNP [dm3] 3R_11783084_SNP [dm6]	C	T	3.661e^-4	0.99	NON_SYNONYMOUS_CODING CG17360
3R	8786393	3R_8786393_SNP [dm3] 3R_12960671_SNP [dm6]	A	G	3.669e^-4	0.99	INTRON grsm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	17175847	2L_17175847_SNP [dm3] 2L_17175847_SNP [dm6]	G	C	3.684e^-4	0.99	UPSTREAM Gr36a EXON CR44394
3L	1419624	3L_1419624_SNP [dm3] 3L_1419624_SNP [dm6]	C	T	3.685e^-4	0.99	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4711611	2L_4711611_SNP [dm3] 2L_4711611_SNP [dm6]	G	A	3.689e^-4	0.99	INTRON CG34351	TF binding site mE1_TFBS_chinmo
3L	16675201	3L_16675201_SNP [dm3] 3L_16682101_SNP [dm6]	A	T	3.691e^-4	0.99	INTRON Lasp & 1 other
2R	19624959	2R_19624959_SNP [dm3] 2R_23737436_SNP [dm6]	C	T	3.694e^-4	0.99	SYNONYMOUS_CODING egl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22830972	3L_22830972_SNP [dm3] 3L_22837872_SNP [dm6]	T	A	3.695e^-4	0.99	UTR_3_PRIME CG11226 UPSTREAM CG45428	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24787666	3R_24787666_SNP [dm3] 3R_28961944_SNP [dm6]	G	T	3.698e^-4	0.99	INTRON CG14521
2L	3282240	2L_3282240_SNP [dm3] 2L_3282240_SNP [dm6]	C	G	3.703e^-4	0.99	INTERGENIC
3L	12194280	3L_12194280_SNP [dm3] 3L_12201180_SNP [dm6]	T	G	3.704e^-4	0.99	INTRON Adk1
3L	14187678	3L_14187678_SNP [dm3] 3L_14194578_SNP [dm6]	G	A	3.709e^-4	0.99	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11758821	2R_11758821_SNP [dm3] 2R_15871316_SNP [dm6]	C	A	3.720e^-4	0.99	UTR_3_PRIME sli	TF binding site mE1_TFBS_cad
3L	822210	3L_822210_SNP [dm3] 3L_822210_SNP [dm6]	C	T	3.727e^-4	0.99	DOWNSTREAM CR43883 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17891919	2R_17891919_SNP [dm3] 2R_22004414_SNP [dm6]	G	T	3.728e^-4	0.99	INTRON CG34370
X	16108471	X_16108471_SNP [dm3] X_16214438_SNP [dm6]	G	A	3.759e^-4	0.99	INTRON disco	TF binding site mE1_TFBS_HSA
X	16524113	X_16524113_SNP [dm3] X_16630080_SNP [dm6]	G	A	3.760e^-4	0.99	SYNONYMOUS_CODING Rok DOWNSTREAM CG9777	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26121061	3R_26121061_SNP [dm3] 3R_30295339_SNP [dm6]	G	C	3.764e^-4	0.99	INTRON hdc
2L	3246312	2L_3246312_SNP [dm3] 2L_3246312_SNP [dm6]	G	A	3.765e^-4	0.99	INTERGENIC
2R	19508637	2R_19508637_INS [dm3] 2R_23621114_INS [dm6]	T	TAAACTTCCCGCCAAGG...	3.778e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15936937	3L_15936937_SNP [dm3] 3L_15943837_SNP [dm6]	C	A	3.795e^-4	0.99	INTRON Pka-C3
2R	10313639	2R_10313639_SNP [dm3] 2R_14426134_SNP [dm6]	T	A	3.801e^-4	0.99	INTERGENIC
2R	9682601	2R_9682601_SNP [dm3] 2R_13795096_SNP [dm6]	C	T	3.808e^-4	0.99	INTRON Cpr50Cb
3L	9870446	3L_9870446_SNP [dm3] 3L_9877346_SNP [dm6]	A	G	3.809e^-4	0.99	DOWNSTREAM CR45406 INTERGENIC
3L	15337572	3L_15337572_SNP [dm3] 3L_15344472_SNP [dm6]	G	A	3.820e^-4	0.99	DOWNSTREAM Toll-6 INTERGENIC
3L	18345695	3L_18345695_SNP [dm3] 3L_18352595_SNP [dm6]	A	T	3.822e^-4	0.99	INTERGENIC
3R	13427840	3R_13427840_SNP [dm3] 3R_17602118_SNP [dm6]	T	C	3.823e^-4	0.99	INTERGENIC
3L	12213285	3L_12213285_SNP [dm3] 3L_12220185_SNP [dm6]	A	T	3.828e^-4	0.99	UTR_5_PRIME app
2L	953002	2L_953002_SNP [dm3] 2L_953002_SNP [dm6]	G	T	3.831e^-4	0.99	NON_SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6064731	3L_6064731_SNP [dm3] 3L_6071631_SNP [dm6]	T	A	3.836e^-4	0.99	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	11652353	3L_11652353_SNP [dm3] 3L_11659253_SNP [dm6]	G	A	3.840e^-4	0.99	INTRON CG32085
3R	18588745	3R_18588745_SNP [dm3] 3R_22763023_SNP [dm6]	T	C	3.856e^-4	0.99	SYNONYMOUS_CODING CG4723 DOWNSTREAM CG4721 INTRON Usp12-46 & 1 other
2L	5153620	2L_5153620_SNP [dm3] 2L_5153620_SNP [dm6]	G	T	3.861e^-4	0.99	INTRON Msp300
X	8260300	X_8260300_INS [dm3] X_8366267_INS [dm6]	C	CC	3.865e^-4	0.99	INTRON nAChRalpha3
3L	5644187	3L_5644187_SNP [dm3] 3L_5651087_SNP [dm6]	G	C	3.868e^-4	0.99	UTR_3_PRIME Blimp-1
2R	17554351	2R_17554351_SNP [dm3] 2R_21666846_SNP [dm6]	A	G	3.882e^-4	0.99	UTR_5_PRIME CG42365 DOWNSTREAM CG42362 & 6 others	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12291478	2R_12291478_SNP [dm3] 2R_16403973_SNP [dm6]	G	C	3.888e^-4	0.99	INTRON Sema-2b
2L	18311546	2L_18311546_SNP [dm3] 2L_18311546_SNP [dm6]	T	C	3.894e^-4	0.99	DOWNSTREAM CR45721 INTERGENIC
2L	18070169	2L_18070169_SNP [dm3] 2L_18070169_SNP [dm6]	T	A	3.895e^-4	0.99	UTR_3_PRIME rdo
2R	15218521	2R_15218521_SNP [dm3] 2R_19331016_SNP [dm6]	T	C	3.896e^-4	0.99	SYNONYMOUS_CODING CG34045 INTRON Rgk1
3L	8105939	3L_8105939_SNP [dm3] 3L_8112839_SNP [dm6]	C	T	3.903e^-4	0.99	UTR_3_PRIME CG7927 DOWNSTREAM Arp3 INTRON CG7927
3L	15298346	3L_15298346_SNP [dm3] 3L_15305246_SNP [dm6]	T	A	3.906e^-4	0.99	UPSTREAM CG7255 INTRON CG7255	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	3693195	2R_3693195_INS [dm3] 2R_7805690_INS [dm6]	C	CC	3.909e^-4	0.99	UPSTREAM sax & 1 other INTRON Nop17l	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
3R	25558847	3R_25558847_SNP [dm3] 3R_29733125_SNP [dm6]	C	T	3.910e^-4	0.99	UTR_3_PRIME Kul
X	14343796	X_14343796_SNP [dm3] X_14449763_SNP [dm6]	C	T	3.919e^-4	0.99	INTRON dpr8
3L	6136574	3L_6136574_SNP [dm3] 3L_6143474_SNP [dm6]	A	G	3.923e^-4	0.99	SYNONYMOUS_CODING Lcp65Ad	TF binding site BDTNP1_TFBS_da
3L	6136580	3L_6136580_SNP [dm3] 3L_6143480_SNP [dm6]	T	C	3.923e^-4	0.99	SYNONYMOUS_CODING Lcp65Ad	TF binding site BDTNP1_TFBS_da
2L	6857177	2L_6857177_SNP [dm3] 2L_6857177_SNP [dm6]	T	C	3.924e^-4	0.99	SYNONYMOUS_CODING l_2_k09022	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
3R	23657547	3R_23657547_SNP [dm3] 3R_27831825_SNP [dm6]	G	A	3.934e^-4	0.99	INTRON CG34353
2R	8386502	2R_8386502_SNP [dm3] 2R_12498997_SNP [dm6]	T	A	3.947e^-4	0.99	INTRON fdl & 1 other
2R	14309927	2R_14309927_SNP [dm3] 2R_18422422_SNP [dm6]	T	A	3.968e^-4	0.99	UPSTREAM CG5174 INTRON CG5174
2R	6568271	2R_6568271_SNP [dm3] 2R_10680766_SNP [dm6]	C	T	3.968e^-4	0.99	INTRON stan	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10584511	2R_10584511_SNP [dm3] 2R_14697006_SNP [dm6]	G	A	3.974e^-4	0.99	INTRON mspo
3R	21480953	3R_21480953_SNP [dm3] 3R_25655231_SNP [dm6]	A	T	3.980e^-4	0.99	INTRON Tnks	TF binding site mE1_TFBS_chinmo
2L	18316303	2L_18316303_SNP [dm3] 2L_18316303_SNP [dm6]	A	G	3.983e^-4	0.99	INTERGENIC
3L	8902716	3L_8902716_SNP [dm3] 3L_8909616_SNP [dm6]	G	A	3.995e^-4	0.99	SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
2L	9780032	2L_9780032_SNP [dm3] 2L_9780032_SNP [dm6]	T	G	4.006e^-4	0.99	INTERGENIC
3L	16765845	3L_16765845_DEL [dm3] 3L_16772745_DEL [dm6]	TT	T	4.015e^-4	0.99	UPSTREAM Nrt INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi
3L	16765848	3L_16765848_SNP [dm3] 3L_16772748_SNP [dm6]	T	A	4.015e^-4	0.99	UPSTREAM Nrt INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi
3L	8155614	3L_8155614_SNP [dm3] 3L_8162514_SNP [dm6]	G	A	4.028e^-4	0.99	INTRON CG13675
2R	11335798	2R_11335798_INS [dm3] 2R_15448293_INS [dm6]	T	TTT	4.037e^-4	0.99	INTRON CG43729
2L	3317556	2L_3317556_SNP [dm3] 2L_3317556_SNP [dm6]	T	C	4.040e^-4	0.99	UTR_3_PRIME CG3326 DOWNSTREAM CG3277
3R	12930544	3R_12930544_SNP [dm3] 3R_17104822_SNP [dm6]	G	A	4.043e^-4	0.99	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12931309	3R_12931309_SNP [dm3] 3R_17105587_SNP [dm6]	T	C	4.043e^-4	0.99	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad
3R	12931782	3R_12931782_SNP [dm3] 3R_17106060_SNP [dm6]	G	C	4.043e^-4	0.99	INTRON cher
3R	27020395	3R_27020395_SNP [dm3] 3R_31194673_SNP [dm6]	G	A	4.051e^-4	0.99	DOWNSTREAM bnk INTRON mesh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6244033	2L_6244033_SNP [dm3] 2L_6244033_SNP [dm6]	C	A	4.059e^-4	0.99	INTERGENIC
2R	8493437	2R_8493437_SNP [dm3] 2R_12605932_SNP [dm6]	G	T	4.061e^-4	0.99	INTRON Amph
3L	15338090	3L_15338090_SNP [dm3] 3L_15344990_SNP [dm6]	T	C	4.062e^-4	0.99	DOWNSTREAM Toll-6 INTERGENIC
2L	3282255	2L_3282255_SNP [dm3] 2L_3282255_SNP [dm6]	G	A	4.067e^-4	0.99	INTERGENIC
3L	16760469	3L_16760469_SNP [dm3] 3L_16767369_SNP [dm6]	G	A	4.069e^-4	0.99	INTRON Nrt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5868588	X_5868588_SNP [dm3] X_5974555_SNP [dm6]	C	T	4.072e^-4	0.99	INTRON Grip
3L	14187940	3L_14187940_SNP [dm3] 3L_14194840_SNP [dm6]	T	C	4.072e^-4	0.99	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6817387	3R_6817387_SNP [dm3] 3R_10991665_SNP [dm6]	A	G	4.074e^-4	0.99	INTRON CG34114
3L	5582780	3L_5582780_SNP [dm3] 3L_5589680_SNP [dm6]	C	G	4.079e^-4	0.99	NON_SYNONYMOUS_CODING l_3_psg2 DOWNSTREAM spo
X	7430029	X_7430029_SNP [dm3] X_7535996_SNP [dm6]	G	A	4.090e^-4	0.99	SYNONYMOUS_CODING CG32720 INTRON CG32719
3R	19152737	3R_19152737_SNP [dm3] 3R_23327015_SNP [dm6]	A	G	4.091e^-4	0.99	INTRON pnt
3L	14959673	3L_14959673_SNP [dm3] 3L_14966573_SNP [dm6]	C	T	4.093e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	16664888	2R_16664888_SNP [dm3] 2R_20777383_SNP [dm6]	A	G	4.104e^-4	0.99	NON_SYNONYMOUS_CODING CG43710 UPSTREAM CG43709 DOWNSTREAM CG43711
3L	7488629	3L_7488629_SNP [dm3] 3L_7495529_SNP [dm6]	T	G	4.104e^-4	0.99	INTRON Cyp4d8
3R	25851272	3R_25851272_SNP [dm3] 3R_30025550_SNP [dm6]	A	T	4.109e^-4	0.99	INTRON Axn
2L	3017663	2L_3017663_SNP [dm3] 2L_3017663_SNP [dm6]	G	A	4.111e^-4	0.99	SYNONYMOUS_CODING CG17224 UPSTREAM CG17264
X	8082055	X_8082055_SNP [dm3] X_8188022_SNP [dm6]	T	G	4.118e^-4	0.99	INTRON sdt
2R	14860049	2R_14860049_SNP [dm3] 2R_18972544_SNP [dm6]	A	C	4.120e^-4	0.99	UPSTREAM Topors & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12537525	2L_12537525_SNP [dm3] 2L_12537525_SNP [dm6]	G	C	4.121e^-4	0.99	INTRON bun
3L	14246711	3L_14246711_SNP [dm3] 3L_14253611_SNP [dm6]	G	T	4.125e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	6182566	2L_6182566_DEL [dm3] 2L_6182566_DEL [dm6]	GA	T	4.132e^-4	0.99	INTRON CG34380	TF binding site mE1_TFBS_sens
3L	14754671	3L_14754671_SNP [dm3] 3L_14761571_SNP [dm6]	T	C	4.135e^-4	0.99	UPSTREAM CG9384 & 1 other INTRON CG33260	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8837752	X_8837752_SNP [dm3] X_8943719_SNP [dm6]	T	C	4.150e^-4	0.99	INTRON rdgA
3L	11845836	3L_11845836_SNP [dm3] 3L_11852736_SNP [dm6]	T	C	4.150e^-4	0.99	INTRON CG44837
X	2145439	X_2145439_SNP [dm3] X_2251406_SNP [dm6]	G	A	4.151e^-4	0.99	DOWNSTREAM CG3091 INTRON CG3191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5050478	X_5050478_SNP [dm3] X_5156445_SNP [dm6]	A	C	4.152e^-4	0.99	INTRON rg & 1 other
X	20460047	X_20460047_SNP [dm3] X_20589020_SNP [dm6]	A	T	4.155e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	23976006	3R_23976006_SNP [dm3] 3R_28150284_SNP [dm6]	T	C	4.180e^-4	0.99	INTRON CG34354
3L	16445936	3L_16445936_SNP [dm3] 3L_16452836_SNP [dm6]	C	T	4.183e^-4	0.99	UPSTREAM dsx-c73A INTRON CG33158	TF binding site mE1_TFBS_Trl
3L	5610648	3L_5610648_SNP [dm3] 3L_5617548_SNP [dm6]	T	G	4.184e^-4	0.99	INTERGENIC
2R	19247116	2R_19247116_SNP [dm3] 2R_23359593_SNP [dm6]	T	C	4.195e^-4	0.99	SYNONYMOUS_CODING CG34424 UPSTREAM CR44168 DOWNSTREAM vir & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19170792	3L_19170792_SNP [dm3] 3L_19177692_SNP [dm6]	C	T	4.196e^-4	0.99	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
X	8437837	X_8437837_DEL [dm3] X_8543804_DEL [dm6]	CC	C	4.203e^-4	0.99	INTRON Nrg
2L	10830915	2L_10830915_SNP [dm3] 2L_10830915_SNP [dm6]	A	T	4.211e^-4	0.99	INTRON Nos
X	6149806	X_6149806_SNP [dm3] X_6255773_SNP [dm6]	A	G	4.211e^-4	0.99	UPSTREAM Spx & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15067377	2R_15067377_SNP [dm3] 2R_19179872_SNP [dm6]	G	A	4.213e^-4	0.99	INTRON hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	12914833	2L_12914833_SNP [dm3] 2L_12914833_SNP [dm6]	G	T	4.222e^-4	0.99	SYNONYMOUS_CODING ACXC UTR_3_PRIME ACXC
X	3246926	X_3246926_SNP [dm3] X_3352893_SNP [dm6]	T	G	4.237e^-4	0.99	INTERGENIC	regulatory region REDfly_CRMs
3R	23657457	3R_23657457_SNP [dm3] 3R_27831735_SNP [dm6]	G	A	4.240e^-4	0.99	INTRON CG34353
2L	6244038	2L_6244038_SNP [dm3] 2L_6244038_SNP [dm6]	C	T	4.243e^-4	0.99	INTERGENIC
3R	3483792	3R_3483792_SNP [dm3] 3R_7658070_SNP [dm6]	G	A	4.244e^-4	0.99	UPSTREAM Nlg1 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6535040	2R_6535040_SNP [dm3] 2R_10647535_SNP [dm6]	C	T	4.259e^-4	0.99	SYNONYMOUS_CODING Elp2
2L	2542713	2L_2542713_SNP [dm3] 2L_2542713_SNP [dm6]	G	A	4.269e^-4	0.99	INTERGENIC
3L	5609695	3L_5609695_SNP [dm3] 3L_5616595_SNP [dm6]	G	A	4.280e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21752807	3R_21752807_SNP [dm3] 3R_25927085_SNP [dm6]	C	T	4.280e^-4	0.99	INTRON CCAP-R
2R	10431631	2R_10431631_SNP [dm3] 2R_14544126_SNP [dm6]	G	A	4.290e^-4	0.99	DOWNSTREAM CG30076 INTRON ttv
3L	15435308	3L_15435308_SNP [dm3] 3L_15442208_SNP [dm6]	T	C	4.294e^-4	0.99	INTERGENIC
3R	11147924	3R_11147924_SNP [dm3] 3R_15322202_SNP [dm6]	T	C	4.297e^-4	0.99	SYNONYMOUS_CODING ear	TF binding site mE1_TFBS_chinmo
2R	6509113	2R_6509113_SNP [dm3] 2R_10621608_SNP [dm6]	C	T	4.303e^-4	0.99	UPSTREAM CG11883 INTRON CG11883
2L	1280865	2L_1280865_SNP [dm3] 2L_1280865_SNP [dm6]	A	G	4.312e^-4	0.99	INTRON robo3
2L	16385086	2L_16385086_SNP [dm3] 2L_16385086_SNP [dm6]	C	T	4.334e^-4	0.99	INTERGENIC
3R	13938265	3R_13938265_SNP [dm3] 3R_18112543_SNP [dm6]	G	A	4.335e^-4	0.99	INTRON sr	TF binding site mE1_TFBS_HSA
2L	11298310	2L_11298310_DEL [dm3] 2L_11298310_DEL [dm6]	CGGTGGGTG	C	4.337e^-4	0.99	INTERGENIC
2L	12917285	2L_12917285_SNP [dm3] 2L_12917285_SNP [dm6]	G	A	4.338e^-4	0.99	NON_SYNONYMOUS_CODING ACXB DOWNSTREAM ACXC
2L	15110905	2L_15110905_SNP [dm3] 2L_15110905_SNP [dm6]	C	G	4.339e^-4	0.99	INTRON CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	7548154	3L_7548154_SNP [dm3] 3L_7555054_SNP [dm6]	C	T	4.346e^-4	0.99	DOWNSTREAM CG14837 INTERGENIC
X	13985694	X_13985694_SNP [dm3] X_14091661_SNP [dm6]	T	A	4.349e^-4	0.99	INTERGENIC
2L	4223047	2L_4223047_SNP [dm3] 2L_4223047_SNP [dm6]	G	A	4.350e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	20346104	2R_20346104_SNP [dm3] 2R_24458581_SNP [dm6]	A	C	4.368e^-4	0.99	INTRON CG13579	TF binding site mE1_TFBS_chinmo
3R	20919885	3R_20919885_SNP [dm3] 3R_25094163_SNP [dm6]	A	T	4.369e^-4	0.99	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8395541	3L_8395541_SNP [dm3] 3L_8402441_SNP [dm6]	C	T	4.375e^-4	0.99	UTR_3_PRIME mkg-p & 1 other DOWNSTREAM CG7120
3R	24787745	3R_24787745_SNP [dm3] 3R_28962023_SNP [dm6]	T	C	4.379e^-4	0.99	INTRON CG14521
2L	3819647	2L_3819647_DEL [dm3] 2L_3819647_DEL [dm6]	ATATCTTTAATGTGG...	A	4.383e^-4	0.99	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8690352	3L_8690352_SNP [dm3] 3L_8697252_SNP [dm6]	A	T	4.391e^-4	0.99	INTERGENIC
X	17578901	X_17578901_SNP [dm3] X_17684868_SNP [dm6]	A	T	4.399e^-4	0.99	INTRON chas
X	17578808	X_17578808_SNP [dm3] X_17684775_SNP [dm6]	C	T	4.407e^-4	0.99	INTRON chas
2R	14598774	2R_14598774_SNP [dm3] 2R_18711269_SNP [dm6]	C	T	4.423e^-4	0.99	UPSTREAM pncr016:2R & 1 other INTERGENIC
3L	8672560	3L_8672560_SNP [dm3] 3L_8679460_SNP [dm6]	G	T	4.423e^-4	0.99	DOWNSTREAM h INTERGENIC	regulatory region REDfly_CRMs
3L	9868596	3L_9868596_SNP [dm3] 3L_9875496_SNP [dm6]	C	T	4.430e^-4	0.99	UPSTREAM CR45406 INTERGENIC
3L	9869352	3L_9869352_SNP [dm3] 3L_9876252_SNP [dm6]	A	G	4.434e^-4	0.99	EXON CR45406
2L	4008317	2L_4008317_SNP [dm3] 2L_4008317_SNP [dm6]	T	A	4.437e^-4	0.99	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
2L	9718029	2L_9718029_SNP [dm3] 2L_9718029_SNP [dm6]	A	G	4.437e^-4	0.99	INTRON Nckx30C
3L	4598007	3L_4598007_DEL [dm3] 3L_4598007_DEL [dm6]	AAAAAAA	A	4.442e^-4	0.99	INTRON Src64B
3L	4598021	3L_4598021_SNP [dm3] 3L_4598021_SNP [dm6]	A	T	4.442e^-4	0.99	INTRON Src64B
2R	13740340	2R_13740340_SNP [dm3] 2R_17852835_SNP [dm6]	C	T	4.452e^-4	0.99	UPSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9772899	2L_9772899_SNP [dm3] 2L_9772899_SNP [dm6]	T	G	4.454e^-4	0.99	SYNONYMOUS_CODING ppk16 DOWNSTREAM ppk11
X	5728624	X_5728624_SNP [dm3] X_5834591_SNP [dm6]	G	C	4.462e^-4	0.99	INTRON CG15765
2L	15775824	2L_15775824_SNP [dm3] 2L_15775824_SNP [dm6]	T	C	4.464e^-4	0.99	DOWNSTREAM CG43760 INTERGENIC
2R	17891922	2R_17891922_SNP [dm3] 2R_22004417_SNP [dm6]	C	T	4.474e^-4	0.99	INTRON CG34370
3R	20851844	3R_20851844_SNP [dm3] 3R_25026122_SNP [dm6]	G	A	4.476e^-4	0.99	SYNONYMOUS_CODING Hr96	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	3537326	2R_3537326_SNP [dm3] 2R_7649821_SNP [dm6]	C	A	4.481e^-4	0.99	UTR_3_PRIME CG43340 INTRON CG43340	insulator Insulator_Class_II.mE01
3L	1380615	3L_1380615_SNP [dm3] 3L_1380615_SNP [dm6]	A	T	4.485e^-4	0.99	DOWNSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17209043	X_17209043_SNP [dm3] X_17315010_SNP [dm6]	G	A	4.501e^-4	0.99	SYNONYMOUS_CODING B-H2 UTR_5_PRIME B-H2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9979088	2R_9979088_SNP [dm3] 2R_14091583_SNP [dm6]	C	G	4.505e^-4	0.99	DOWNSTREAM CG42287 INTRON Prosap & 1 other
2L	12151596	2L_12151596_SNP [dm3] 2L_12151596_SNP [dm6]	C	T	4.508e^-4	0.99	INTRON CG31760
2L	12151641	2L_12151641_SNP [dm3] 2L_12151641_SNP [dm6]	T	C	4.512e^-4	0.99	INTRON CG31760
3R	26091726	3R_26091726_SNP [dm3] 3R_30266004_SNP [dm6]	T	G	4.514e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3028427	2L_3028427_SNP [dm3] 2L_3028427_SNP [dm6]	T	C	4.527e^-4	0.99	NON_SYNONYMOUS_CODING CG3605 UPSTREAM CG17219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7711570	3L_7711570_SNP [dm3] 3L_7718470_SNP [dm6]	A	G	4.540e^-4	0.99	UPSTREAM CG12262 & 1 other INTRON CG32373
2R	10315347	2R_10315347_SNP [dm3] 2R_14427842_SNP [dm6]	T	C	4.544e^-4	0.99	SYNONYMOUS_CODING phyl	TF binding site mE1_TFBS_chinmo
X	17573283	X_17573283_INS [dm3] X_17679250_INS [dm6]	T	TTGT	4.556e^-4	0.99	INTRON chas
2R	16907279	2R_16907279_SNP [dm3] 2R_21019774_SNP [dm6]	T	C	4.562e^-4	0.99	SYNONYMOUS_CODING RIC-3 INTRON RIC-3
X	8715212	X_8715212_SNP [dm3] X_8821179_SNP [dm6]	T	A	4.577e^-4	0.99	INTERGENIC
X	8715221	X_8715221_SNP [dm3] X_8821188_SNP [dm6]	C	T	4.577e^-4	0.99	INTERGENIC
3L	2565133	3L_2565133_SNP [dm3] 3L_2565133_SNP [dm6]	C	A	4.595e^-4	0.99	INTRON msn
3L	4237888	3L_4237888_SNP [dm3] 3L_4237888_SNP [dm6]	C	G	4.595e^-4	0.99	INTERGENIC
2R	10431644	2R_10431644_SNP [dm3] 2R_14544139_SNP [dm6]	A	G	4.598e^-4	0.99	DOWNSTREAM CG30076 INTRON ttv
2R	9836455	2R_9836455_SNP [dm3] 2R_13948950_SNP [dm6]	T	C	4.602e^-4	0.99	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	17369234	3R_17369234_SNP [dm3] 3R_21543512_SNP [dm6]	G	T	4.607e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	16127177	2R_16127177_SNP [dm3] 2R_20239672_SNP [dm6]	G	C	4.608e^-4	0.99	UPSTREAM Efhc1.2 & 1 other DOWNSTREAM CG11099 INTERGENIC
3L	17920822	3L_17920822_SNP [dm3] 3L_17927722_SNP [dm6]	G	T	4.608e^-4	0.99	INTERGENIC
X	6335410	X_6335410_SNP [dm3] X_6441377_SNP [dm6]	A	G	4.610e^-4	0.99	INTRON CG42340
3L	11912426	3L_11912426_INS [dm3] 3L_11919326_INS [dm6]	A	ACAA	4.623e^-4	0.99	INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14693436	2L_14693436_SNP [dm3] 2L_14693436_SNP [dm6]	G	T	4.630e^-4	0.99	INTERGENIC
3R	23798457	3R_23798457_DEL [dm3] 3R_27972735_DEL [dm6]	CCCCAA	C	4.636e^-4	0.99	INTRON betaTub97EF
3R	7760718	3R_7760718_DEL [dm3] 3R_11934996_DEL [dm6]	ACATTTCTCTCAATTA...	A	4.647e^-4	0.99	INTRON Cad87A
2L	19594780	2L_19594780_SNP [dm3] 2L_19594780_SNP [dm6]	C	T	4.653e^-4	0.99	INTRON Lar
2R	14477058	2R_14477058_SNP [dm3] 2R_18589553_SNP [dm6]	A	G	4.654e^-4	0.99	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
3R	3498656	3R_3498656_SNP [dm3] 3R_7672934_SNP [dm6]	A	C	4.672e^-4	0.99	INTRON Nlg1
3R	24739675	3R_24739675_SNP [dm3] 3R_28913953_SNP [dm6]	C	T	4.680e^-4	0.99	INTRON Doa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9450027	2R_9450027_SNP [dm3] 2R_13562522_SNP [dm6]	C	G	4.685e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	14513968	2R_14513968_SNP [dm3] 2R_18626463_SNP [dm6]	C	G	4.686e^-4	0.99	SYNONYMOUS_CODING Sec6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12292938	2R_12292938_SNP [dm3] 2R_16405433_SNP [dm6]	G	C	4.689e^-4	0.99	INTRON Sema-2b
2L	11332370	2L_11332370_SNP [dm3] 2L_11332370_SNP [dm6]	T	A	4.691e^-4	0.99	INTRON CR44584
3R	13976789	3R_13976789_SNP [dm3] 3R_18151067_SNP [dm6]	C	A	4.693e^-4	0.99	INTERGENIC
3L	14324616	3L_14324616_SNP [dm3] 3L_14331516_SNP [dm6]	G	A	4.698e^-4	0.99	INTRON fz
3R	21033435	3R_21033435_SNP [dm3] 3R_25207713_SNP [dm6]	C	G	4.704e^-4	0.99	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_Trl
2R	7022322	2R_7022322_SNP [dm3] 2R_11134817_SNP [dm6]	T	G	4.705e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	19407734	3L_19407734_SNP [dm3] 3L_19414634_SNP [dm6]	C	T	4.710e^-4	0.99	INTERGENIC
2R	1202444	2R_1202444_SNP [dm3] 2R_5314939_SNP [dm6]	C	G	4.711e^-4	0.99	INTRON sxc	transposable element FlyBase
3R	21033382	3R_21033382_SNP [dm3] 3R_25207660_SNP [dm6]	A	C	4.715e^-4	0.99	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_Trl
3L	9864142	3L_9864142_SNP [dm3] 3L_9871042_SNP [dm6]	C	T	4.715e^-4	0.99	DOWNSTREAM CG8108 INTERGENIC
X	17578888	X_17578888_SNP [dm3] X_17684855_SNP [dm6]	A	T	4.717e^-4	0.99	INTRON chas
X	6149689	X_6149689_SNP [dm3] X_6255656_SNP [dm6]	G	C	4.723e^-4	0.99	UPSTREAM Spx & 1 other INTERGENIC
3R	8799610	3R_8799610_SNP [dm3] 3R_12973888_SNP [dm6]	T	G	4.738e^-4	0.99	INTRON CG7381
3R	9753290	3R_9753290_SNP [dm3] 3R_13927568_SNP [dm6]	A	T	4.762e^-4	0.99	INTERGENIC
3L	2851344	3L_2851344_SNP [dm3] 3L_2851344_SNP [dm6]	G	A	4.763e^-4	0.99	INTRON CG43444	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	1543222	2L_1543222_SNP [dm3] 2L_1543222_SNP [dm6]	T	G	4.769e^-4	0.99	INTERGENIC
2R	14857385	2R_14857385_SNP [dm3] 2R_18969880_SNP [dm6]	G	A	4.774e^-4	0.99	SYNONYMOUS_CODING prod	TF binding site mE1_TFBS_cad
X	7058990	X_7058990_SNP [dm3] X_7164957_SNP [dm6]	A	G	4.775e^-4	0.99	INTRON CG9650
3L	8155684	3L_8155684_SNP [dm3] 3L_8162584_SNP [dm6]	C	T	4.779e^-4	0.99	INTRON CG13675
3L	7936777	3L_7936777_SNP [dm3] 3L_7943677_SNP [dm6]	G	T	4.786e^-4	0.99	INTERGENIC
X	5050379	X_5050379_SNP [dm3] X_5156346_SNP [dm6]	A	G	4.789e^-4	0.99	INTRON rg & 1 other
2L	19701699	2L_19701699_SNP [dm3] 2L_19701699_SNP [dm6]	C	T	4.794e^-4	0.99	UPSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4725013	2L_4725013_SNP [dm3] 2L_4725013_SNP [dm6]	A	G	4.815e^-4	0.99	INTERGENIC
3L	1305133	3L_1305133_SNP [dm3] 3L_1305133_SNP [dm6]	G	T	4.816e^-4	0.99	UTR_3_PRIME CG2277 DOWNSTREAM CG2277 & 1 other
3R	23669907	3R_23669907_DEL [dm3] 3R_27844185_DEL [dm6]	AGCCTGAAAAAA...	C	4.817e^-4	0.99	UPSTREAM Or98P INTRON CG34353
3R	13426223	3R_13426223_SNP [dm3] 3R_17600501_SNP [dm6]	T	A	4.828e^-4	0.99	INTERGENIC
3L	2583277	3L_2583277_SNP [dm3] 3L_2583277_SNP [dm6]	A	C	4.833e^-4	0.99	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6243989	2L_6243989_SNP [dm3] 2L_6243989_SNP [dm6]	A	T	4.841e^-4	0.99	INTERGENIC
2R	9647839	2R_9647839_SNP [dm3] 2R_13760334_SNP [dm6]	A	T	4.842e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	23916544	3R_23916544_SNP [dm3] 3R_28090822_SNP [dm6]	G	A	4.848e^-4	0.99	DOWNSTREAM CG34362 INTERGENIC
3L	7335470	3L_7335470_SNP [dm3] 3L_7342370_SNP [dm6]	G	C	4.852e^-4	0.99	SYNONYMOUS_CODING CG8596 DOWNSTREAM lark	TF binding site mE1_TFBS_cad
X	10415119	X_10415119_SNP [dm3] X_10521086_SNP [dm6]	G	A	4.852e^-4	0.99	INTRON spri
X	5967979	X_5967979_SNP [dm3] X_6073946_SNP [dm6]	T	C	4.852e^-4	0.99	UPSTREAM Tsp5D INTRON Tsp5D
2L	1280844	2L_1280844_SNP [dm3] 2L_1280844_SNP [dm6]	C	A	4.854e^-4	0.99	INTRON robo3
2L	2538862	2L_2538862_SNP [dm3] 2L_2538862_SNP [dm6]	A	G	4.856e^-4	0.99	INTERGENIC
2L	2538874	2L_2538874_SNP [dm3] 2L_2538874_SNP [dm6]	A	T	4.856e^-4	0.99	INTERGENIC
3R	4309404	3R_4309404_SNP [dm3] 3R_8483682_SNP [dm6]	T	A	4.865e^-4	0.99	INTERGENIC
2R	1751054	2R_1751054_DEL [dm3] 2R_5863549_DEL [dm6]	GACATACAATGG...	G	4.874e^-4	0.99	INTERGENIC
3R	8786439	3R_8786439_INS [dm3] 3R_12960717_INS [dm6]	A	ATA	4.895e^-4	0.99	INTRON grsm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	10279691	X_10279691_SNP [dm3] X_10385658_SNP [dm6]	C	T	4.898e^-4	0.99	UTR_5_PRIME Psf3 UPSTREAM flw & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12408985	2R_12408985_SNP [dm3] 2R_16521480_SNP [dm6]	T	C	4.899e^-4	0.99	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4214246	3L_4214246_SNP [dm3] 3L_4214246_SNP [dm6]	T	C	4.908e^-4	0.99	INTRON CG43367	TF binding site mE1_TFBS_cad
2L	7056101	2L_7056101_SNP [dm3] 2L_7056101_SNP [dm6]	A	T	4.913e^-4	0.99	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	23499985	3R_23499985_SNP [dm3] 3R_27674263_SNP [dm6]	A	G	4.913e^-4	0.99	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_chinmo
2R	10630061	2R_10630061_SNP [dm3] 2R_14742556_SNP [dm6]	A	G	4.914e^-4	0.99	SYNONYMOUS_CODING CG12858
2R	19575377	2R_19575377_SNP [dm3] 2R_23687854_SNP [dm6]	A	G	4.925e^-4	0.99	UTR_3_PRIME St3 UPSTREAM Pal2	TF binding site mE1_TFBS_cad
2R	14477022	2R_14477022_DEL [dm3] 2R_18589517_DEL [dm6]	AA	A	4.931e^-4	0.99	INTRON GEFmeso	TF binding site mE1_TFBS_chinmo
X	2603584	X_2603584_SNP [dm3] X_2709551_SNP [dm6]	C	T	4.933e^-4	0.99	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
2L	6099328	2L_6099328_SNP [dm3] 2L_6099328_SNP [dm6]	A	T	4.944e^-4	0.99	UPSTREAM CG9175 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16900858	2R_16900858_SNP [dm3] 2R_21013353_SNP [dm6]	C	A	4.966e^-4	0.99	INTRON CG9346	TF binding site mE1_TFBS_sens
3R	8786397	3R_8786397_SNP [dm3] 3R_12960675_SNP [dm6]	A	T	4.984e^-4	0.99	INTRON grsm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20706848	2L_20706848_SNP [dm3] 2L_20706848_SNP [dm6]	T	A	4.987e^-4	0.99	INTRON Hr38
3L	497147	3L_497147_SNP [dm3] 3L_497147_SNP [dm6]	T	C	4.991e^-4	0.99	INTRON klar
3L	7772801	3L_7772801_SNP [dm3] 3L_7779701_SNP [dm6]	G	C	4.997e^-4	0.99	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10464115	2L_10464115_SNP [dm3] 2L_10464115_SNP [dm6]	C	T	5.000e^-4	0.99	SYNONYMOUS_CODING RluA-1 UTR_3_PRIME RluA-1
3L	2145216	3L_2145216_SNP [dm3] 3L_2145216_SNP [dm6]	C	G	5.013e^-4	0.99	INTRON zormin
2R	8493476	2R_8493476_INS [dm3] 2R_12605971_INS [dm6]	G	GACTG	5.013e^-4	0.99	INTRON Amph
3R	16380224	3R_16380224_SNP [dm3] 3R_20554502_SNP [dm6]	G	T	5.023e^-4	0.99	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9865397	3L_9865397_SNP [dm3] 3L_9872297_SNP [dm6]	C	A	5.024e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	14723727	2R_14723727_INS [dm3] 2R_18836222_INS [dm6]	T	TT	5.025e^-4	0.99	DOWNSTREAM CG15099 INTRON CG15083
2R	7706758	2R_7706758_SNP [dm3] 2R_11819253_SNP [dm6]	G	T	5.026e^-4	0.99	INTERGENIC
X	810491	X_810491_DEL [dm3] X_916458_DEL [dm6]	CGGGT	C	5.033e^-4	0.99	INTRON CG43867
2L	952804	2L_952804_SNP [dm3] 2L_952804_SNP [dm6]	G	A	5.059e^-4	0.99	SYNONYMOUS_CODING CG4341	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6147470	X_6147470_DEL [dm3] X_6253437_DEL [dm6]	AAAAA	CCTC	5.063e^-4	0.99	INTRON Rbcn-3A
2L	5541123	2L_5541123_SNP [dm3] 2L_5541123_SNP [dm6]	C	T	5.071e^-4	0.99	INTRON Hel25E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
2R	13159951	2R_13159951_SNP [dm3] 2R_17272446_SNP [dm6]	A	T	5.071e^-4	0.99	INTRON mbl
3L	3254947	3L_3254947_SNP [dm3] 3L_3254947_SNP [dm6]	T	A	5.083e^-4	0.99	DOWNSTREAM CR43626 INTERGENIC
2L	5541132	2L_5541132_SNP [dm3] 2L_5541132_SNP [dm6]	G	C	5.087e^-4	0.99	INTRON Hel25E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z
3L	1735712	3L_1735712_SNP [dm3] 3L_1735712_SNP [dm6]	G	A	5.090e^-4	0.99	UTR_5_PRIME Oseg4 DOWNSTREAM CG18173	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
3R	3554408	3R_3554408_SNP [dm3] 3R_7728686_SNP [dm6]	C	T	5.090e^-4	0.99	INTERGENIC
3R	4708694	3R_4708694_SNP [dm3] 3R_8882972_SNP [dm6]	C	G	5.093e^-4	0.99	INTRON pyd	TF binding site mE1_TFBS_HSA
X	13985637	X_13985637_SNP [dm3] X_14091604_SNP [dm6]	A	T	5.097e^-4	0.99	INTERGENIC
3L	15986029	3L_15986029_SNP [dm3] 3L_15992929_SNP [dm6]	A	G	5.100e^-4	0.99	UTR_3_PRIME CG5830 DOWNSTREAM Hip14	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11384274	3L_11384274_SNP [dm3] 3L_11391174_SNP [dm6]	T	A	5.108e^-4	0.99	INTERGENIC
3R	23883088	3R_23883088_SNP [dm3] 3R_28057366_SNP [dm6]	A	G	5.110e^-4	0.99	INTRON CG34362
3L	14381109	3L_14381109_SNP [dm3] 3L_14388009_SNP [dm6]	T	A	5.120e^-4	0.99	INTERGENIC
3L	9146426	3L_9146426_SNP [dm3] 3L_9153326_SNP [dm6]	T	C	5.132e^-4	0.99	INTRON Rdl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9992329	3L_9992329_SNP [dm3] 3L_9999229_SNP [dm6]	A	C	5.148e^-4	0.99	INTRON dpr6
3R	25045743	3R_25045743_SNP [dm3] 3R_29220021_SNP [dm6]	T	C	5.154e^-4	0.99	UPSTREAM Ef1gamma DOWNSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	8254705	2L_8254705_SNP [dm3] 2L_8254705_SNP [dm6]	G	A	5.162e^-4	0.99	INTRON CG8086	TF binding site BDTNP1_TFBS_twi
2L	9544942	2L_9544942_SNP [dm3] 2L_9544942_SNP [dm6]	T	G	5.162e^-4	0.99	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
3R	20732822	3R_20732822_SNP [dm3] 3R_24907100_SNP [dm6]	C	T	5.164e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26778089	3R_26778089_SNP [dm3] 3R_30952367_SNP [dm6]	C	A	5.176e^-4	0.99	INTERGENIC
2L	12586442	2L_12586442_SNP [dm3] 2L_12586442_SNP [dm6]	C	A	5.176e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1419616	3L_1419616_SNP [dm3] 3L_1419616_SNP [dm6]	A	G	5.177e^-4	0.99	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10596132	3L_10596132_SNP [dm3] 3L_10603032_SNP [dm6]	T	C	5.182e^-4	0.99	INTERGENIC
2R	10631817	2R_10631817_INS [dm3] 2R_14744312_INS [dm6]	A	AGTTT	5.196e^-4	0.99	INTRON CG12858
2R	10631823	2R_10631823_SNP [dm3] 2R_14744318_SNP [dm6]	A	G	5.196e^-4	0.99	INTRON CG12858
2L	3022990	2L_3022990_SNP [dm3] 2L_3022990_SNP [dm6]	C	T	5.198e^-4	0.99	UPSTREAM CG3542 INTRON alpha4GT1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	16781122	2L_16781122_DEL [dm3] 2L_16781122_DEL [dm6]	GC	T	5.202e^-4	0.99	INTRON Mhc
3L	19170353	3L_19170353_DEL [dm3] 3L_19177253_DEL [dm6]	CA	C	5.211e^-4	0.99	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7741574	2L_7741574_SNP [dm3] 2L_7741574_SNP [dm6]	T	A	5.215e^-4	0.99	UPSTREAM Acp1 INTERGENIC
2L	12127815	2L_12127815_SNP [dm3] 2L_12127815_SNP [dm6]	A	G	5.216e^-4	0.99	SYNONYMOUS_CODING CG17211
2L	19701716	2L_19701716_SNP [dm3] 2L_19701716_SNP [dm6]	T	C	5.224e^-4	0.99	UPSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3200372	2L_3200372_SNP [dm3] 2L_3200372_SNP [dm6]	A	G	5.224e^-4	0.99	UPSTREAM CG34393 INTRON CG34393
3R	5864871	3R_5864871_SNP [dm3] 3R_10039149_SNP [dm6]	G	T	5.232e^-4	0.99	INTRON Mical
3L	4576514	3L_4576514_SNP [dm3] 3L_4576514_SNP [dm6]	A	C	5.241e^-4	0.99	INTRON CG42540
X	812701	X_812701_SNP [dm3] X_918668_SNP [dm6]	G	A	5.243e^-4	0.99	INTRON CG43867
X	2849101	X_2849101_SNP [dm3] X_2955068_SNP [dm6]	G	C	5.264e^-4	0.99	SYNONYMOUS_CODING rst INTRON kirre	TF binding site mE1_TFBS_cad
3R	4615818	3R_4615818_SNP [dm3] 3R_8790096_SNP [dm6]	C	A	5.268e^-4	0.99	INTRON Pif1B & 1 other
X	1567526	X_1567526_SNP [dm3] X_1673493_SNP [dm6]	T	C	5.278e^-4	0.99	UTR_3_PRIME hfw & 1 other DOWNSTREAM hfw
2R	6291514	2R_6291514_SNP [dm3] 2R_10404009_SNP [dm6]	G	A	5.287e^-4	0.99	INTRON CG42732
3L	5601072	3L_5601072_SNP [dm3] 3L_5607972_SNP [dm6]	G	A	5.307e^-4	0.99	SYNONYMOUS_CODING Eaf6 DOWNSTREAM mthl2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	15405407	2L_15405407_SNP [dm3] 2L_15405407_SNP [dm6]	A	T	5.309e^-4	0.99	INTERGENIC
2L	17343287	2L_17343287_SNP [dm3] 2L_17343287_SNP [dm6]	G	A	5.310e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_cad
X	811235	X_811235_SNP [dm3] X_917202_SNP [dm6]	A	T	5.312e^-4	0.99	INTRON CG43867
X	813634	X_813634_SNP [dm3] X_919601_SNP [dm6]	G	A	5.312e^-4	0.99	INTRON CG43867
3R	5942220	3R_5942220_SNP [dm3] 3R_10116498_SNP [dm6]	C	T	5.335e^-4	0.99	INTRON CG3940
X	2704709	X_2704709_SNP [dm3] X_2810676_SNP [dm6]	G	A	5.341e^-4	0.99	NON_SYNONYMOUS_CODING CG12498 INTRON kirre	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7548817	3L_7548817_SNP [dm3] 3L_7555717_SNP [dm6]	T	G	5.342e^-4	0.99	DOWNSTREAM CG14837 INTERGENIC
3L	4597991	3L_4597991_SNP [dm3] 3L_4597991_SNP [dm6]	T	C	5.345e^-4	0.99	INTRON Src64B
3R	14465690	3R_14465690_SNP [dm3] 3R_18639968_SNP [dm6]	T	G	5.353e^-4	0.99	INTRON qin & 1 other
3R	7024564	3R_7024564_SNP [dm3] 3R_11198842_SNP [dm6]	G	T	5.356e^-4	0.99	INTRON cu
3L	1418085	3L_1418085_SNP [dm3] 3L_1418085_SNP [dm6]	C	T	5.358e^-4	0.99	DOWNSTREAM FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23661637	3R_23661637_SNP [dm3] 3R_27835915_SNP [dm6]	G	T	5.368e^-4	0.99	INTRON CG34353
3R	9870858	3R_9870858_SNP [dm3] 3R_14045136_SNP [dm6]	C	T	5.371e^-4	0.99	UPSTREAM tRNA:S2b:88A INTERGENIC
2R	8429759	2R_8429759_SNP [dm3] 2R_12542254_SNP [dm6]	G	A	5.372e^-4	0.99	INTRON fra
3L	5588862	3L_5588862_SNP [dm3] 3L_5595762_SNP [dm6]	A	G	5.375e^-4	0.99	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad
2L	18609529	2L_18609529_SNP [dm3] 2L_18609529_SNP [dm6]	A	G	5.379e^-4	0.99	UTR_3_PRIME CG10333 DOWNSTREAM Atac2
3L	23095921	3L_23095921_SNP [dm3] 3L_23102821_SNP [dm6]	G	A	5.383e^-4	0.99	SYNONYMOUS_CODING CkIIalpha	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17578881	X_17578881_SNP [dm3] X_17684848_SNP [dm6]	A	T	5.407e^-4	0.99	INTRON chas
2L	6099239	2L_6099239_SNP [dm3] 2L_6099239_SNP [dm6]	C	T	5.408e^-4	0.99	UPSTREAM CG9175 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22638245	3R_22638245_SNP [dm3] 3R_26812523_SNP [dm6]	A	T	5.416e^-4	0.99	INTRON Tl
X	8653347	X_8653347_SNP [dm3] X_8759314_SNP [dm6]	G	A	5.420e^-4	0.99	INTRON Lim1	TF binding site mE1_TFBS_chinmo
2L	5349789	2L_5349789_SNP [dm3] 2L_5349789_SNP [dm6]	T	C	5.426e^-4	0.99	INTRON nompC
3L	5987047	3L_5987047_SNP [dm3] 3L_5993947_SNP [dm6]	G	T	5.436e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18646338	3L_18646338_SNP [dm3] 3L_18653238_SNP [dm6]	G	C	5.438e^-4	0.99	INTRON MYPT-75D
X	14816217	X_14816217_SNP [dm3] X_14922184_SNP [dm6]	T	A	5.439e^-4	0.99	INTRON Flo2 & 1 other
3R	23976191	3R_23976191_SNP [dm3] 3R_28150469_SNP [dm6]	A	T	5.439e^-4	0.99	INTRON CG34354
3L	14688231	3L_14688231_SNP [dm3] 3L_14695131_SNP [dm6]	A	G	5.440e^-4	0.99	INTRON ome
3L	843916	3L_843916_SNP [dm3] 3L_843916_SNP [dm6]	A	T	5.447e^-4	0.99	UPSTREAM CG13889 DOWNSTREAM Gr61a INTERGENIC
2R	9451425	2R_9451425_SNP [dm3] 2R_13563920_SNP [dm6]	A	C	5.455e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
2R	8519456	2R_8519456_SNP [dm3] 2R_12631951_SNP [dm6]	A	T	5.466e^-4	0.99	UPSTREAM CG33792 INTRON muskelin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	4852961	X_4852961_SNP [dm3] X_4958928_SNP [dm6]	A	G	5.467e^-4	0.99	INTRON CR44833
3R	7867365	3R_7867365_SNP [dm3] 3R_12041643_SNP [dm6]	T	A	5.470e^-4	0.99	INTRON CG14736
3R	23755798	3R_23755798_SNP [dm3] 3R_27930076_SNP [dm6]	A	G	5.476e^-4	0.99	SYNONYMOUS_CODING mino	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1713327	3R_1713327_SNP [dm3] 3R_5887605_SNP [dm6]	G	A	5.493e^-4	0.99	INTRON CG34113
2R	9979021	2R_9979021_SNP [dm3] 2R_14091516_SNP [dm6]	C	T	5.499e^-4	0.99	SYNONYMOUS_CODING CG42288 DOWNSTREAM CG42287 INTRON Prosap
2L	12915658	2L_12915658_SNP [dm3] 2L_12915658_SNP [dm6]	C	G	5.513e^-4	0.99	INTRON ACXC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8430389	2R_8430389_SNP [dm3] 2R_12542884_SNP [dm6]	G	A	5.520e^-4	0.99	INTRON fra
2R	13220133	2R_13220133_SNP [dm3] 2R_17332628_SNP [dm6]	A	T	5.525e^-4	0.99	INTRON mbl	TF binding site BDTNP1_TFBS_prd
3L	11845835	3L_11845835_SNP [dm3] 3L_11852735_SNP [dm6]	A	T	5.533e^-4	0.99	INTRON CG44837
2R	16664855	2R_16664855_SNP [dm3] 2R_20777350_SNP [dm6]	T	G	5.542e^-4	0.99	NON_SYNONYMOUS_CODING CG43710 UPSTREAM CG43709 DOWNSTREAM CG43711
2L	7068933	2L_7068933_SNP [dm3] 2L_7068933_SNP [dm6]	T	A	5.545e^-4	0.99	SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
X	18953480	X_18953480_SNP [dm3] X_19059447_SNP [dm6]	G	A	5.548e^-4	0.99	INTRON CG14190
3L	7055600	3L_7055600_SNP [dm3] 3L_7062500_SNP [dm6]	A	G	5.554e^-4	0.99	SYNONYMOUS_CODING CG8641	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4598450	3L_4598450_SNP [dm3] 3L_4598450_SNP [dm6]	T	C	5.561e^-4	0.99	UTR_5_PRIME Src64B
3R	8372552	3R_8372552_SNP [dm3] 3R_12546830_SNP [dm6]	A	T	5.563e^-4	0.99	INTRON Octbeta3R	TF binding site mE1_TFBS_sbb
2L	9512344	2L_9512344_SNP [dm3] 2L_9512344_SNP [dm6]	G	T	5.576e^-4	0.99	INTRON CG33298	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	2579584	2L_2579584_SNP [dm3] 2L_2579584_SNP [dm6]	A	C	5.579e^-4	0.99	UPSTREAM Arpc5 DOWNSTREAM Elba2 INTRON CG3214	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	20811680	2L_20811680_SNP [dm3] 2L_20811680_SNP [dm6]	T	C	5.581e^-4	0.99	INTRON CG9328
3R	24969547	3R_24969547_SNP [dm3] 3R_29143825_SNP [dm6]	G	C	5.581e^-4	0.99	SYNONYMOUS_CODING CG14516
2L	514262	2L_514262_SNP [dm3] 2L_514262_SNP [dm6]	C	T	5.582e^-4	0.99	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	18009028	2R_18009028_DEL [dm3] 2R_22121523_DEL [dm6]	TAAAT	C	5.586e^-4	0.99	UPSTREAM mei-S332 INTRON Vrp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	14598411	2R_14598411_SNP [dm3] 2R_18710906_SNP [dm6]	T	A	5.589e^-4	0.99	UPSTREAM pncr016:2R & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8691952	3L_8691952_SNP [dm3] 3L_8698852_SNP [dm6]	T	C	5.590e^-4	0.99	INTERGENIC
2L	16090869	2L_16090869_SNP [dm3] 2L_16090869_SNP [dm6]	G	C	5.592e^-4	0.99	INTERGENIC
3R	9695906	3R_9695906_SNP [dm3] 3R_13870184_SNP [dm6]	C	T	5.596e^-4	0.99	INTRON E5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3016480	2L_3016480_SNP [dm3] 2L_3016480_SNP [dm6]	T	C	5.602e^-4	0.99	UTR_3_PRIME CG17224 DOWNSTREAM CG17224 & 1 other
3R	23469163	3R_23469163_INS [dm3] 3R_27643441_INS [dm6]	C	CC	5.602e^-4	0.99	UPSTREAM mir-1001 INTRON tau
2L	3019974	2L_3019974_SNP [dm3] 2L_3019974_SNP [dm6]	T	C	5.603e^-4	0.99	INTRON CG17264	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9264160	2R_9264160_SNP [dm3] 2R_13376655_SNP [dm6]	T	A	5.608e^-4	0.99	INTRON CG10814	TF binding site mE1_TFBS_chinmo
3L	13453182	3L_13453182_SNP [dm3] 3L_13460082_SNP [dm6]	A	G	5.608e^-4	0.99	UTR_5_PRIME CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12941472	3L_12941472_SNP [dm3] 3L_12948372_SNP [dm6]	C	T	5.611e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_inv
3R	23798380	3R_23798380_SNP [dm3] 3R_27972658_SNP [dm6]	A	G	5.617e^-4	0.99	INTRON betaTub97EF
2L	5153631	2L_5153631_SNP [dm3] 2L_5153631_SNP [dm6]	A	G	5.627e^-4	0.99	INTRON Msp300
3R	19206043	3R_19206043_SNP [dm3] 3R_23380321_SNP [dm6]	A	G	5.633e^-4	0.99	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5583676	3L_5583676_SNP [dm3] 3L_5590576_SNP [dm6]	A	T	5.649e^-4	0.99	UTR_3_PRIME spo DOWNSTREAM l_3_psg2
2L	109128	2L_109128_SNP [dm3] 2L_109128_SNP [dm6]	C	T	5.652e^-4	0.99	UPSTREAM Sam-S INTRON Sam-S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6833793	X_6833793_SNP [dm3] X_6939760_SNP [dm6]	T	A	5.670e^-4	0.99	INTRON CG14431
2L	6803174	2L_6803174_SNP [dm3] 2L_6803174_SNP [dm6]	C	T	5.684e^-4	0.99	SYNONYMOUS_CODING CG11236 UPSTREAM CG17377	regulatory region REDfly_CRMs
2R	12583221	2R_12583221_SNP [dm3] 2R_16695716_SNP [dm6]	C	T	5.687e^-4	0.99	INTRON CG30463
X	5594969	X_5594969_SNP [dm3] X_5700936_SNP [dm6]	A	T	5.700e^-4	0.99	INTRON CG4096
2R	10631894	2R_10631894_DEL [dm3] 2R_14744389_DEL [dm6]	AC	A	5.705e^-4	0.99	INTRON CG12858
2L	16816621	2L_16816621_SNP [dm3] 2L_16816621_SNP [dm6]	G	C	5.710e^-4	0.99	UPSTREAM mdy DOWNSTREAM CG13272 INTRON CG13280	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	13940771	2R_13940771_SNP [dm3] 2R_18053266_SNP [dm6]	C	G	5.745e^-4	0.99	NON_SYNONYMOUS_CODING CG10911	TF binding site mE1_TFBS_cad
2R	15394287	2R_15394287_SNP [dm3] 2R_19506782_SNP [dm6]	C	T	5.748e^-4	0.99	UPSTREAM tRNA:H:56E INTERGENIC
3R	7760600	3R_7760600_SNP [dm3] 3R_11934878_SNP [dm6]	G	A	5.748e^-4	0.99	INTRON Cad87A
3L	1530432	3L_1530432_SNP [dm3] 3L_1530432_SNP [dm6]	C	T	5.754e^-4	0.99	SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	7340784	3R_7340784_SNP [dm3] 3R_11515062_SNP [dm6]	C	T	5.757e^-4	0.99	INTERGENIC
X	7573434	X_7573434_INS [dm3] X_7679401_INS [dm6]	C	CAT	5.757e^-4	0.99	DOWNSTREAM ct & 1 other EXON CR45667	TF binding site mE1_TFBS_bab1
3R	25114879	3R_25114879_SNP [dm3] 3R_29289157_SNP [dm6]	T	C	5.760e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5488790	2L_5488790_SNP [dm3] 2L_5488790_SNP [dm6]	T	C	5.761e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	7179556	2R_7179556_SNP [dm3] 2R_11292051_SNP [dm6]	A	G	5.764e^-4	0.99	SYNONYMOUS_CODING dare UPSTREAM CG18335 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11435010	3R_11435010_SNP [dm3] 3R_15609288_SNP [dm6]	A	G	5.766e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11435012	3R_11435012_SNP [dm3] 3R_15609290_SNP [dm6]	C	T	5.766e^-4	0.99	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13607322	3R_13607322_SNP [dm3] 3R_17781600_SNP [dm6]	T	C	5.778e^-4	0.99	INTRON CG43102
3L	7209267	3L_7209267_SNP [dm3] 3L_7216167_SNP [dm6]	C	T	5.779e^-4	0.99	INTERGENIC
2L	11887054	2L_11887054_SNP [dm3] 2L_11887054_SNP [dm6]	T	C	5.786e^-4	0.99	INTRON Pde1c
2L	6182687	2L_6182687_DEL [dm3] 2L_6182687_DEL [dm6]	CAGC	C	5.803e^-4	0.99	INTRON CG34380	TF binding site mE1_TFBS_sens
X	7058887	X_7058887_SNP [dm3] X_7164854_SNP [dm6]	C	T	5.807e^-4	0.99	INTRON CG9650
2L	12052998	2L_12052998_SNP [dm3] 2L_12052998_SNP [dm6]	C	T	5.808e^-4	0.99	SYNONYMOUS_CODING JhI-21 DOWNSTREAM CG14945
2L	3022557	2L_3022557_SNP [dm3] 2L_3022557_SNP [dm6]	T	A	5.810e^-4	0.99	NON_SYNONYMOUS_CODING alpha4GT1 UPSTREAM CG3542	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	8492329	2R_8492329_SNP [dm3] 2R_12604824_SNP [dm6]	T	C	5.811e^-4	0.99	INTRON Amph
3L	12518944	3L_12518944_SNP [dm3] 3L_12525844_SNP [dm6]	G	T	5.821e^-4	0.99	DOWNSTREAM ver INTRON eIF-2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6913150	3L_6913150_SNP [dm3] 3L_6920050_SNP [dm6]	C	A	5.831e^-4	0.99	INTERGENIC
2R	10631805	2R_10631805_MNP [dm3] 2R_14744300_MNP [dm6]	GTAGG	TCCTA	5.840e^-4	0.99	INTRON CG12858	TF binding site mE1_TFBS_cad
2R	10631811	2R_10631811_MNP [dm3] 2R_14744306_MNP [dm6]	ATC	CCT	5.840e^-4	0.99	INTRON CG12858	TF binding site mE1_TFBS_cad
3L	9604899	3L_9604899_DEL [dm3] 3L_9611799_DEL [dm6]	GT	G	5.845e^-4	0.99	SPLICE_SITE_REGION CG3280 INTRON CG3280
2R	12583099	2R_12583099_SNP [dm3] 2R_16695594_SNP [dm6]	A	G	5.850e^-4	0.99	INTRON CG30463
2L	12649607	2L_12649607_SNP [dm3] 2L_12649607_SNP [dm6]	A	G	5.851e^-4	0.99	INTERGENIC
3R	24631405	3R_24631405_SNP [dm3] 3R_28805683_SNP [dm6]	C	A	5.852e^-4	0.99	INTERGENIC
2L	19619001	2L_19619001_SNP [dm3] 2L_19619001_SNP [dm6]	G	A	5.858e^-4	0.99	INTRON Lar
3L	6514370	3L_6514370_SNP [dm3] 3L_6521270_SNP [dm6]	C	T	5.860e^-4	0.99	INTRON sfl
2R	13940884	2R_13940884_SNP [dm3] 2R_18053379_SNP [dm6]	C	G	5.861e^-4	0.99	INTRON CG10911	TF binding site mE1_TFBS_cad
X	2590247	X_2590247_SNP [dm3] X_2696214_SNP [dm6]	A	G	5.873e^-4	0.99	SYNONYMOUS_CODING CG2658	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9767881	2L_9767881_SNP [dm3] 2L_9767881_SNP [dm6]	C	T	5.887e^-4	0.99	SYNONYMOUS_CODING CG4017 INTRON ppk18
2L	3016386	2L_3016386_SNP [dm3] 2L_3016386_SNP [dm6]	C	T	5.891e^-4	0.99	DOWNSTREAM CG17224 & 1 other INTERGENIC
2L	7056123	2L_7056123_SNP [dm3] 2L_7056123_SNP [dm6]	G	A	5.900e^-4	0.99	UPSTREAM Mnn1 DOWNSTREAM milt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	18325403	2L_18325403_SNP [dm3] 2L_18325403_SNP [dm6]	G	A	5.901e^-4	0.99	INTRON Fas3
3L	12194294	3L_12194294_SNP [dm3] 3L_12201194_SNP [dm6]	C	A	5.913e^-4	0.99	INTRON Adk1
3L	5987027	3L_5987027_SNP [dm3] 3L_5993927_SNP [dm6]	A	G	5.916e^-4	0.99	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9331719	X_9331719_SNP [dm3] X_9437686_SNP [dm6]	T	C	5.923e^-4	0.99	INTRON mgl
2L	20835619	2L_20835619_DEL [dm3] 2L_20835619_DEL [dm6]	CAATAT	C	5.923e^-4	0.99	UTR_5_PRIME Oseg5 DOWNSTREAM Spn38F	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25045394	3R_25045394_SNP [dm3] 3R_29219672_SNP [dm6]	T	A	5.926e^-4	0.99	UPSTREAM Ef1gamma DOWNSTREAM CR31044 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	26653000	3R_26653000_SNP [dm3] 3R_30827278_SNP [dm6]	A	G	5.927e^-4	0.99	UPSTREAM CG15544 DOWNSTREAM cindr INTERGENIC
3L	12817739	3L_12817739_SNP [dm3] 3L_12824639_SNP [dm6]	G	A	5.931e^-4	0.99	UTR_3_PRIME CG42588 DOWNSTREAM CG10960
2L	3299887	2L_3299887_SNP [dm3] 2L_3299887_SNP [dm6]	T	G	5.936e^-4	0.99	INTRON CG9663	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22268134	3R_22268134_SNP [dm3] 3R_26442412_SNP [dm6]	T	C	5.964e^-4	0.99	INTRON tx
3R	22268135	3R_22268135_SNP [dm3] 3R_26442413_SNP [dm6]	A	G	5.964e^-4	0.99	INTRON tx
3L	15408690	3L_15408690_SNP [dm3] 3L_15415590_SNP [dm6]	T	C	5.967e^-4	0.99	INTERGENIC
2R	17892912	2R_17892912_SNP [dm3] 2R_22005407_SNP [dm6]	A	G	5.968e^-4	0.99	INTRON CG34370
3L	13229085	3L_13229085_SNP [dm3] 3L_13235985_SNP [dm6]	C	A	5.970e^-4	0.99	INTRON caps

By genomic position
Variant impact
Gene name

Late_Activity phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results