DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.735e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0506834

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

445 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10862309	2L_10862309_SNP [dm3] 2L_10862309_SNP [dm6]	A	G	2.351e^-4	0.807	DOWNSTREAM Stam EXON CR43807
2L	13111121	2L_13111121_SNP [dm3] 2L_13111121_SNP [dm6]	T	C	2.351e^-4	0.807	INTERGENIC
2L	13688810	2L_13688810_SNP [dm3] 2L_13688810_SNP [dm6]	A	C	2.351e^-4	0.807	INTRON CG31814
2L	14418378	2L_14418378_SNP [dm3] 2L_14418378_SNP [dm6]	G	A	2.351e^-4	0.807	INTERGENIC
2L	14418395	2L_14418395_SNP [dm3] 2L_14418395_SNP [dm6]	A	T	2.351e^-4	0.807	INTERGENIC
2L	14418401	2L_14418401_SNP [dm3] 2L_14418401_SNP [dm6]	A	G	2.351e^-4	0.807	INTERGENIC
2L	14428386	2L_14428386_SNP [dm3] 2L_14428386_SNP [dm6]	T	C	2.351e^-4	0.807	DOWNSTREAM CR44732 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	1563000	2L_1563000_SNP [dm3] 2L_1563000_SNP [dm6]	G	A	2.351e^-4	0.807	INTRON haf	TF binding site mE1_TFBS_inv
2L	1563037	2L_1563037_SNP [dm3] 2L_1563037_SNP [dm6]	C	A	2.351e^-4	0.807	INTRON haf	TF binding site mE1_TFBS_inv
2L	15769414	2L_15769414_SNP [dm3] 2L_15769414_SNP [dm6]	T	C	2.351e^-4	0.807	SYNONYMOUS_CODING Ku80
2L	18621207	2L_18621207_SNP [dm3] 2L_18621207_SNP [dm6]	G	T	2.351e^-4	0.807	INTRON MESR3	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	19948693	2L_19948693_SNP [dm3] 2L_19948693_SNP [dm6]	A	G	2.351e^-4	0.807	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19948707	2L_19948707_INS [dm3] 2L_19948707_INS [dm6]	T	TT	2.351e^-4	0.807	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22034519	2L_22034519_SNP [dm3] 2L_22034519_SNP [dm6]	T	C	2.351e^-4	0.807	DOWNSTREAM CR45335 INTERGENIC
2L	22080935	2L_22080935_SNP [dm3] 2L_22080935_SNP [dm6]	T	C	2.351e^-4	0.807	DOWNSTREAM ttm3 INTERGENIC
2L	22085395	2L_22085395_SNP [dm3] 2L_22085395_SNP [dm6]	C	A	2.351e^-4	0.807	INTERGENIC
2L	22095948	2L_22095948_SNP [dm3] 2L_22095948_SNP [dm6]	A	G	2.351e^-4	0.807	INTERGENIC
2L	3156949	2L_3156949_SNP [dm3] 2L_3156949_SNP [dm6]	G	A	2.351e^-4	0.807	INTRON Mad
2L	5814382	2L_5814382_SNP [dm3] 2L_5814382_SNP [dm6]	T	C	2.351e^-4	0.807	INTERGENIC
2L	7215199	2L_7215199_SNP [dm3] 2L_7215199_SNP [dm6]	T	G	2.351e^-4	0.807	INTRON CG13784
2R	11850411	2R_11850411_SNP [dm3] 2R_15962906_SNP [dm6]	T	C	2.351e^-4	0.807	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	12187970	2R_12187970_SNP [dm3] 2R_16300465_SNP [dm6]	T	A	2.351e^-4	0.807	EXON CR45232
2R	13648653	2R_13648653_SNP [dm3] 2R_17761148_SNP [dm6]	A	C	2.351e^-4	0.807	UTR_5_PRIME CG5009 DOWNSTREAM HLH54F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13648988	2R_13648988_SNP [dm3] 2R_17761483_SNP [dm6]	G	A	2.351e^-4	0.807	DOWNSTREAM HLH54F INTRON CG5009	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13649079	2R_13649079_SNP [dm3] 2R_17761574_SNP [dm6]	T	A	2.351e^-4	0.807	INTRON CG5009	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	13649123	2R_13649123_SNP [dm3] 2R_17761618_SNP [dm6]	G	A	2.351e^-4	0.807	INTRON CG5009	TF binding site mE1_TFBS_sens
2R	13649129	2R_13649129_SNP [dm3] 2R_17761624_SNP [dm6]	T	G	2.351e^-4	0.807	INTRON CG5009	TF binding site mE1_TFBS_sens
2R	13649195	2R_13649195_SNP [dm3] 2R_17761690_SNP [dm6]	C	T	2.351e^-4	0.807	INTRON CG5009
2R	13649215	2R_13649215_SNP [dm3] 2R_17761710_SNP [dm6]	T	C	2.351e^-4	0.807	INTRON CG5009
2R	13649218	2R_13649218_SNP [dm3] 2R_17761713_SNP [dm6]	A	G	2.351e^-4	0.807	INTRON CG5009
2R	13649743	2R_13649743_SNP [dm3] 2R_17762238_SNP [dm6]	G	T	2.351e^-4	0.807	NON_SYNONYMOUS_CODING CG5009
2R	14586469	2R_14586469_SNP [dm3] 2R_18698964_SNP [dm6]	G	A	2.351e^-4	0.807	INTRON Sik3
2R	5840258	2R_5840258_SNP [dm3] 2R_9952753_SNP [dm6]	T	G	2.351e^-4	0.807	INTRON Mef2
2R	6373997	2R_6373997_SNP [dm3] 2R_10486492_SNP [dm6]	A	G	2.351e^-4	0.807	DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9811915	2R_9811915_SNP [dm3] 2R_13924410_SNP [dm6]	A	G	2.351e^-4	0.807	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9971232	2R_9971232_SNP [dm3] 2R_14083727_SNP [dm6]	T	C	2.351e^-4	0.807	INTRON Prosap
2R	9979343	2R_9979343_SNP [dm3] 2R_14091838_SNP [dm6]	G	C	2.351e^-4	0.807	DOWNSTREAM CG42287 & 1 other INTRON Prosap
3L	1280296	3L_1280296_DEL [dm3] 3L_1280296_DEL [dm6]	AA	A	2.351e^-4	0.807	INTRON CG32333
3L	1280382	3L_1280382_SNP [dm3] 3L_1280382_SNP [dm6]	A	G	2.351e^-4	0.807	INTRON CG32333
3L	1280527	3L_1280527_SNP [dm3] 3L_1280527_SNP [dm6]	C	A	2.351e^-4	0.807	INTRON CG32333
3L	1364567	3L_1364567_SNP [dm3] 3L_1364567_SNP [dm6]	A	G	2.351e^-4	0.807	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1386222	3L_1386222_SNP [dm3] 3L_1386222_SNP [dm6]	T	A	2.351e^-4	0.807	NON_SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	13891658	3L_13891658_SNP [dm3] 3L_13898558_SNP [dm6]	A	T	2.351e^-4	0.807	INTRON dysc
3L	13891673	3L_13891673_SNP [dm3] 3L_13898573_SNP [dm6]	A	C	2.351e^-4	0.807	INTRON dysc
3L	13891789	3L_13891789_SNP [dm3] 3L_13898689_SNP [dm6]	A	C	2.351e^-4	0.807	INTRON dysc
3L	13891794	3L_13891794_SNP [dm3] 3L_13898694_SNP [dm6]	A	G	2.351e^-4	0.807	INTRON dysc
3L	13891827	3L_13891827_SNP [dm3] 3L_13898727_SNP [dm6]	G	C	2.351e^-4	0.807	INTRON dysc
3L	13891861	3L_13891861_SNP [dm3] 3L_13898761_SNP [dm6]	T	A	2.351e^-4	0.807	INTRON dysc
3L	16046615	3L_16046615_SNP [dm3] 3L_16053515_SNP [dm6]	C	T	2.351e^-4	0.807	SYNONYMOUS_CODING Mbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2029776	3L_2029776_SNP [dm3] 3L_2029776_SNP [dm6]	G	A	2.351e^-4	0.807	INTERGENIC
3L	2683494	3L_2683494_SNP [dm3] 3L_2683494_SNP [dm6]	A	G	2.351e^-4	0.807	INTRON Fife
3L	991991	3L_991991_SNP [dm3] 3L_991991_SNP [dm6]	A	G	2.351e^-4	0.807	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
X	16579981	X_16579981_SNP [dm3] X_16685948_SNP [dm6]	T	G	2.351e^-4	0.807	INTRON Sep4
X	16580007	X_16580007_SNP [dm3] X_16685974_SNP [dm6]	G	C	2.351e^-4	0.807	INTRON Sep4
X	16580020	X_16580020_SNP [dm3] X_16685987_SNP [dm6]	C	T	2.351e^-4	0.807	INTRON Sep4
X	16961004	X_16961004_SNP [dm3] X_17066971_SNP [dm6]	T	A	2.351e^-4	0.807	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
X	16961137	X_16961137_SNP [dm3] X_17067104_SNP [dm6]	A	G	2.351e^-4	0.807	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
X	16961156	X_16961156_SNP [dm3] X_17067123_SNP [dm6]	G	A	2.351e^-4	0.807	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
X	16961209	X_16961209_SNP [dm3] X_17067176_SNP [dm6]	A	T	2.351e^-4	0.807	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
X	17622059	X_17622059_SNP [dm3] X_17728026_SNP [dm6]	C	T	2.351e^-4	0.807	INTRON CG42684
X	20455847	X_20455847_SNP [dm3] X_20584820_SNP [dm6]	T	C	2.351e^-4	0.807	INTERGENIC
X	21162507	X_21162507_SNP [dm3] X_21291480_SNP [dm6]	T	C	2.351e^-4	0.807	SYNONYMOUS_CODING CG1494 DOWNSTREAM CG1718	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2287980	X_2287980_SNP [dm3] X_2393947_SNP [dm6]	G	A	2.351e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	2469577	X_2469577_SNP [dm3] X_2575544_SNP [dm6]	T	A	2.351e^-4	0.807	INTRON Pdfr
X	2469747	X_2469747_SNP [dm3] X_2575714_SNP [dm6]	C	T	2.351e^-4	0.807	SYNONYMOUS_CODING Pdfr
X	2675799	X_2675799_INS [dm3] X_2781766_INS [dm6]	T	TT	2.351e^-4	0.807	INTRON kirre	TF binding site mE1_TFBS_chinmo
X	2882205	X_2882205_SNP [dm3] X_2988172_SNP [dm6]	C	T	2.351e^-4	0.807	UPSTREAM kirre INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6646564	X_6646564_SNP [dm3] X_6752531_SNP [dm6]	C	T	2.351e^-4	0.807	INTRON CG14439
X	8427384	X_8427384_SNP [dm3] X_8533351_SNP [dm6]	G	A	2.351e^-4	0.807	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10883230	3L_10883230_SNP [dm3] 3L_10890130_SNP [dm6]	A	G	2.589e^-4	0.807	INTRON Cpr67Fa1
3L	10927644	3L_10927644_SNP [dm3] 3L_10934544_SNP [dm6]	C	T	2.589e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10927647	3L_10927647_SNP [dm3] 3L_10934547_SNP [dm6]	C	T	2.589e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19181120	3L_19181120_SNP [dm3] 3L_19188020_SNP [dm6]	C	A	2.835e^-4	0.807	INTRON fz2
2R	17341439	2R_17341439_SNP [dm3] 2R_21453934_SNP [dm6]	C	G	3.070e^-4	0.807	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	10434419	3L_10434419_SNP [dm3] 3L_10441319_SNP [dm6]	C	A	3.070e^-4	0.807	INTERGENIC
3L	10437614	3L_10437614_SNP [dm3] 3L_10444514_SNP [dm6]	T	A	3.070e^-4	0.807	INTERGENIC
3L	13841879	3L_13841879_SNP [dm3] 3L_13848779_SNP [dm6]	T	G	3.070e^-4	0.807	INTRON Hml
3L	13841907	3L_13841907_SNP [dm3] 3L_13848807_SNP [dm6]	G	C	3.070e^-4	0.807	INTRON Hml
3L	16745156	3L_16745156_SNP [dm3] 3L_16752056_SNP [dm6]	T	C	3.070e^-4	0.807	INTERGENIC
3L	16745720	3L_16745720_SNP [dm3] 3L_16752620_SNP [dm6]	C	T	3.070e^-4	0.807	INTERGENIC
3L	6652287	3L_6652287_SNP [dm3] 3L_6659187_SNP [dm6]	A	G	3.070e^-4	0.807	INTERGENIC
3L	6652427	3L_6652427_SNP [dm3] 3L_6659327_SNP [dm6]	A	G	3.070e^-4	0.807	INTERGENIC
3L	6652505	3L_6652505_SNP [dm3] 3L_6659405_SNP [dm6]	G	C	3.070e^-4	0.807	INTERGENIC
3L	6652611	3L_6652611_SNP [dm3] 3L_6659511_SNP [dm6]	T	G	3.070e^-4	0.807	INTERGENIC
3L	6652628	3L_6652628_SNP [dm3] 3L_6659528_SNP [dm6]	C	T	3.070e^-4	0.807	INTERGENIC
3L	6652661	3L_6652661_SNP [dm3] 3L_6659561_SNP [dm6]	C	T	3.070e^-4	0.807	INTERGENIC
3L	6652806	3L_6652806_SNP [dm3] 3L_6659706_SNP [dm6]	A	T	3.070e^-4	0.807	INTERGENIC
3L	7775706	3L_7775706_SNP [dm3] 3L_7782606_SNP [dm6]	T	A	3.070e^-4	0.807	INTRON CG32369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9058388	3L_9058388_SNP [dm3] 3L_9065288_SNP [dm6]	A	G	3.070e^-4	0.807	INTRON Argk	TF binding site mE1_TFBS_bab1
3L	9058450	3L_9058450_SNP [dm3] 3L_9065350_SNP [dm6]	T	C	3.070e^-4	0.807	INTRON Argk	TF binding site mE1_TFBS_bab1
3L	9216939	3L_9216939_SNP [dm3] 3L_9223839_SNP [dm6]	G	C	3.070e^-4	0.807	INTERGENIC
3L	9383766	3L_9383766_SNP [dm3] 3L_9390666_SNP [dm6]	T	C	3.070e^-4	0.807	SYNONYMOUS_CODING CG4080	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9883782	3L_9883782_DEL [dm3] 3L_9890682_DEL [dm6]	AACTAATGTG	A	3.070e^-4	0.807	INTRON CalpB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9887281	3L_9887281_SNP [dm3] 3L_9894181_SNP [dm6]	T	C	3.070e^-4	0.807	SYNONYMOUS_CODING CG14164 START_GAINED CG6709 UTR_5_PRIME CG6709 UPSTREAM CG6709 DOWNSTREAM CalpB & 1 other
X	18739809	X_18739809_SNP [dm3] X_18845776_SNP [dm6]	G	A	3.070e^-4	0.807	SYNONYMOUS_CODING CG34422 DOWNSTREAM CG7280	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	6984632	2L_6984632_SNP [dm3] 2L_6984632_SNP [dm6]	G	A	3.222e^-4	0.807	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16961245	X_16961245_SNP [dm3] X_17067212_SNP [dm6]	A	T	3.222e^-4	0.807	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
2R	13650490	2R_13650490_SNP [dm3] 2R_17762985_SNP [dm6]	T	G	3.578e^-4	0.807	SYNONYMOUS_CODING CG5009
X	4472906	X_4472906_SNP [dm3] X_4578873_SNP [dm6]	T	A	3.608e^-4	0.807	INTRON CR32773
2R	12675026	2R_12675026_SNP [dm3] 2R_16787521_SNP [dm6]	T	G	3.759e^-4	0.807	INTRON CG5522
2R	6753865	2R_6753865_SNP [dm3] 2R_10866360_SNP [dm6]	T	C	3.759e^-4	0.807	INTRON CG30015
X	15439412	X_15439412_SNP [dm3] X_15545379_SNP [dm6]	T	C	3.759e^-4	0.807	INTRON Ac13E
X	16635033	X_16635033_SNP [dm3] X_16741000_SNP [dm6]	T	G	3.759e^-4	0.807	UTR_5_PRIME CG32568 INTRON CG9634
X	16961128	X_16961128_INS [dm3] X_17067095_INS [dm6]	T	TTCTCCGACTTTTCGCT...	3.759e^-4	0.807	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
X	15439374	X_15439374_DEL [dm3] X_15545341_DEL [dm6]	CCCG	T	4.465e^-4	0.807	INTRON Ac13E
3L	13841874	3L_13841874_SNP [dm3] 3L_13848774_SNP [dm6]	C	T	4.512e^-4	0.807	SPLICE_SITE_REGION Hml INTRON Hml
2L	22931801	2L_22931801_SNP [dm3] 2L_23039069_SNP [dm6]	C	G	4.885e^-4	0.807	INTERGENIC
2L	22932150	2L_22932150_INS [dm3] 2L_23039418_INS [dm6]	A	AAAAAAAACTTAATAGAGCA...	4.885e^-4	0.807	INTERGENIC
2L	15031063	2L_15031063_SNP [dm3] 2L_15031063_SNP [dm6]	G	T	4.959e^-4	0.807	SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
2L	7215208	2L_7215208_SNP [dm3] 2L_7215208_SNP [dm6]	G	A	4.959e^-4	0.807	INTRON CG13784
2R	8907740	2R_8907740_SNP [dm3] 2R_13020235_SNP [dm6]	T	C	4.959e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	3731323	3L_3731323_SNP [dm3] 3L_3731323_SNP [dm6]	G	A	4.959e^-4	0.807	INTRON CG32264
3L	7606890	3L_7606890_SNP [dm3] 3L_7613790_SNP [dm6]	G	A	4.959e^-4	0.807	INTRON CG33275
X	18750807	X_18750807_SNP [dm3] X_18856774_SNP [dm6]	C	T	4.959e^-4	0.807	DOWNSTREAM CG34422 INTRON CG7322
X	6545267	X_6545267_SNP [dm3] X_6651234_SNP [dm6]	G	A	4.959e^-4	0.807	UTR_3_PRIME pigs	TF binding site mE1_TFBS_inv
2R	4058001	2R_4058001_SNP [dm3] 2R_8170496_SNP [dm6]	G	A	5.568e^-4	0.807	SYNONYMOUS_CODING Mlh1 DOWNSTREAM Gasz	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	12158893	X_12158893_INS [dm3] X_12264860_INS [dm6]	C	CATTGC	5.620e^-4	0.807	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9883796	3L_9883796_SNP [dm3] 3L_9890696_SNP [dm6]	T	A	5.626e^-4	0.807	INTRON CalpB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15564837	2R_15564837_SNP [dm3] 2R_19677332_SNP [dm6]	C	T	6.122e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	11442539	3L_11442539_SNP [dm3] 3L_11449439_SNP [dm6]	A	G	6.122e^-4	0.807	INTERGENIC
2L	13129516	2L_13129516_SNP [dm3] 2L_13129516_SNP [dm6]	T	A	6.129e^-4	0.807	INTERGENIC
2L	19948670	2L_19948670_SNP [dm3] 2L_19948670_SNP [dm6]	T	A	6.129e^-4	0.807	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19948699	2L_19948699_SNP [dm3] 2L_19948699_SNP [dm6]	C	T	6.129e^-4	0.807	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11442506	3L_11442506_SNP [dm3] 3L_11449406_SNP [dm6]	C	A	6.333e^-4	0.807	INTERGENIC
2L	22950191	2L_22950191_SNP [dm3] 2L_23057459_SNP [dm6]	C	T	6.458e^-4	0.807	INTERGENIC
2L	10038558	2L_10038558_SNP [dm3] 2L_10038558_SNP [dm6]	C	A	6.691e^-4	0.807	SYNONYMOUS_CODING obst-B
2L	10556409	2L_10556409_SNP [dm3] 2L_10556409_SNP [dm6]	G	A	6.691e^-4	0.807	INTRON Trim9
2L	10556460	2L_10556460_SNP [dm3] 2L_10556460_SNP [dm6]	G	A	6.691e^-4	0.807	INTRON Trim9
2L	13680796	2L_13680796_SNP [dm3] 2L_13680796_SNP [dm6]	T	C	6.691e^-4	0.807	INTRON CG31814	TF binding site BDTNP1_TFBS_twi
2L	13935967	2L_13935967_SNP [dm3] 2L_13935967_SNP [dm6]	A	G	6.691e^-4	0.807	INTRON Ance-3
2L	14043481	2L_14043481_SNP [dm3] 2L_14043481_SNP [dm6]	G	C	6.691e^-4	0.807	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14212359	2L_14212359_SNP [dm3] 2L_14212359_SNP [dm6]	A	G	6.691e^-4	0.807	INTRON Dyrk2
2L	14430978	2L_14430978_SNP [dm3] 2L_14430978_SNP [dm6]	A	G	6.691e^-4	0.807	UPSTREAM CR44732 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14431013	2L_14431013_SNP [dm3] 2L_14431013_SNP [dm6]	C	T	6.691e^-4	0.807	UPSTREAM CR44732 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1562936	2L_1562936_SNP [dm3] 2L_1562936_SNP [dm6]	A	T	6.691e^-4	0.807	INTRON haf	TF binding site mE1_TFBS_inv
2L	15634130	2L_15634130_SNP [dm3] 2L_15634130_SNP [dm6]	A	G	6.691e^-4	0.807	UTR_3_PRIME CG18480
2L	15650162	2L_15650162_SNP [dm3] 2L_15650162_SNP [dm6]	T	A	6.691e^-4	0.807	INTRON CG4587	TF binding site mE1_TFBS_inv
2L	15650164	2L_15650164_SNP [dm3] 2L_15650164_SNP [dm6]	T	C	6.691e^-4	0.807	INTRON CG4587	TF binding site mE1_TFBS_inv
2L	18268240	2L_18268240_SNP [dm3] 2L_18268240_SNP [dm6]	A	G	6.691e^-4	0.807	INTRON CG42750
2L	20760464	2L_20760464_SNP [dm3] 2L_20760464_SNP [dm6]	C	T	6.691e^-4	0.807	INTRON dia	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21143677	2L_21143677_SNP [dm3] 2L_21143677_SNP [dm6]	A	G	6.691e^-4	0.807	SYNONYMOUS_CODING CG9253 UPSTREAM snoRNA:Me18S-A469	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21938934	2L_21938934_SNP [dm3] 2L_21938934_SNP [dm6]	C	T	6.691e^-4	0.807	INTERGENIC
2L	21939005	2L_21939005_SNP [dm3] 2L_21939005_SNP [dm6]	C	A	6.691e^-4	0.807	INTERGENIC
2L	21939006	2L_21939006_SNP [dm3] 2L_21939006_SNP [dm6]	C	T	6.691e^-4	0.807	INTERGENIC
2L	22077717	2L_22077717_SNP [dm3] 2L_22077717_SNP [dm6]	T	A	6.691e^-4	0.807	INTERGENIC
2L	6186892	2L_6186892_SNP [dm3] 2L_6186892_SNP [dm6]	C	T	6.691e^-4	0.807	INTRON CG34380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
2L	6187063	2L_6187063_SNP [dm3] 2L_6187063_SNP [dm6]	T	C	6.691e^-4	0.807	INTRON CG34380	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11257334	2R_11257334_SNP [dm3] 2R_15369829_SNP [dm6]	A	G	6.691e^-4	0.807	SYNONYMOUS_CODING Pms2
2R	11257418	2R_11257418_SNP [dm3] 2R_15369913_SNP [dm6]	G	C	6.691e^-4	0.807	NON_SYNONYMOUS_CODING Pms2
2R	11279713	2R_11279713_SNP [dm3] 2R_15392208_SNP [dm6]	A	G	6.691e^-4	0.807	INTERGENIC
2R	11300258	2R_11300258_SNP [dm3] 2R_15412753_SNP [dm6]	C	T	6.691e^-4	0.807	INTRON CG43729
2R	11300282	2R_11300282_SNP [dm3] 2R_15412777_SNP [dm6]	T	C	6.691e^-4	0.807	INTRON CG43729
2R	11301095	2R_11301095_SNP [dm3] 2R_15413590_SNP [dm6]	T	C	6.691e^-4	0.807	INTRON CG43729
2R	11301097	2R_11301097_SNP [dm3] 2R_15413592_SNP [dm6]	A	G	6.691e^-4	0.807	INTRON CG43729
2R	11311838	2R_11311838_SNP [dm3] 2R_15424333_SNP [dm6]	T	G	6.691e^-4	0.807	SYNONYMOUS_CODING CG43729 UPSTREAM CG43729 & 1 other	TF binding site mE1_TFBS_HSA
2R	11311841	2R_11311841_SNP [dm3] 2R_15424336_SNP [dm6]	A	G	6.691e^-4	0.807	SYNONYMOUS_CODING CG43729 UPSTREAM CG43729 & 1 other	TF binding site mE1_TFBS_HSA
2R	11311844	2R_11311844_SNP [dm3] 2R_15424339_SNP [dm6]	A	G	6.691e^-4	0.807	SYNONYMOUS_CODING CG43729 UPSTREAM CG43729 & 1 other	TF binding site mE1_TFBS_HSA
2R	11311868	2R_11311868_SNP [dm3] 2R_15424363_SNP [dm6]	C	T	6.691e^-4	0.807	SYNONYMOUS_CODING CG43729 UPSTREAM CG43729 & 1 other	TF binding site mE1_TFBS_HSA
2R	11312021	2R_11312021_SNP [dm3] 2R_15424516_SNP [dm6]	A	G	6.691e^-4	0.807	UPSTREAM CG43729 & 1 other INTRON CG43729	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11322823	2R_11322823_SNP [dm3] 2R_15435318_SNP [dm6]	C	A	6.691e^-4	0.807	INTRON CG43729
2R	11322824	2R_11322824_SNP [dm3] 2R_15435319_SNP [dm6]	A	C	6.691e^-4	0.807	INTRON CG43729
2R	11850364	2R_11850364_SNP [dm3] 2R_15962859_SNP [dm6]	C	T	6.691e^-4	0.807	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	11850461	2R_11850461_SNP [dm3] 2R_15962956_SNP [dm6]	T	A	6.691e^-4	0.807	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	13657166	2R_13657166_SNP [dm3] 2R_17769661_SNP [dm6]	G	C	6.691e^-4	0.807	SYNONYMOUS_CODING CG18635 DOWNSTREAM CG6362	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	15963706	2R_15963706_SNP [dm3] 2R_20076201_SNP [dm6]	A	G	6.691e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16805168	2R_16805168_SNP [dm3] 2R_20917663_SNP [dm6]	A	T	6.691e^-4	0.807	INTRON Rx
2R	17006695	2R_17006695_SNP [dm3] 2R_21119190_SNP [dm6]	G	A	6.691e^-4	0.807	SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17007132	2R_17007132_SNP [dm3] 2R_21119627_SNP [dm6]	C	T	6.691e^-4	0.807	NON_SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17272865	2R_17272865_SNP [dm3] 2R_21385360_SNP [dm6]	A	G	6.691e^-4	0.807	SYNONYMOUS_CODING EfSec UPSTREAM CG10795 & 1 other	TF binding site mE1_TFBS_sens
2R	17477030	2R_17477030_INS [dm3] 2R_21589525_INS [dm6]	C	CTC	6.691e^-4	0.807	UPSTREAM CG33225 INTERGENIC
2R	17557994	2R_17557994_SNP [dm3] 2R_21670489_SNP [dm6]	C	T	6.691e^-4	0.807	UPSTREAM CG9865 & 3 others INTRON NC2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3662235	2R_3662235_SNP [dm3] 2R_7774730_SNP [dm6]	T	G	6.691e^-4	0.807	INTRON CG30497 & 1 other
2R	6054368	2R_6054368_SNP [dm3] 2R_10166863_SNP [dm6]	T	G	6.691e^-4	0.807	INTRON KCNQ
2R	7763523	2R_7763523_SNP [dm3] 2R_11876018_SNP [dm6]	T	C	6.691e^-4	0.807	SYNONYMOUS_CODING CG13185
2R	8934253	2R_8934253_SNP [dm3] 2R_13046748_SNP [dm6]	T	C	6.691e^-4	0.807	UTR_3_PRIME CG13323
3L	1364653	3L_1364653_SNP [dm3] 3L_1364653_SNP [dm6]	G	C	6.691e^-4	0.807	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
3L	15019462	3L_15019462_SNP [dm3] 3L_15026362_SNP [dm6]	G	A	6.691e^-4	0.807	INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2175192	3L_2175192_SNP [dm3] 3L_2175192_SNP [dm6]	C	T	6.691e^-4	0.807	UPSTREAM CG15820 INTERGENIC
3L	4118202	3L_4118202_SNP [dm3] 3L_4118202_SNP [dm6]	G	A	6.691e^-4	0.807	INTRON Chd64
3L	560737	3L_560737_SNP [dm3] 3L_560737_SNP [dm6]	A	T	6.691e^-4	0.807	INTRON hipk
3L	9069338	3L_9069338_SNP [dm3] 3L_9076238_SNP [dm6]	A	C	6.691e^-4	0.807	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
3L	9069505	3L_9069505_SNP [dm3] 3L_9076405_SNP [dm6]	G	A	6.691e^-4	0.807	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
3L	9078149	3L_9078149_SNP [dm3] 3L_9085049_SNP [dm6]	G	C	6.691e^-4	0.807	INTRON Tequila
X	12813660	X_12813660_SNP [dm3] X_12919627_SNP [dm6]	A	G	6.691e^-4	0.807	UTR_5_PRIME fne
X	4296354	X_4296354_SNP [dm3] X_4402321_SNP [dm6]	T	A	6.691e^-4	0.807	INTRON CR32773	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	7225931	X_7225931_SNP [dm3] X_7331898_SNP [dm6]	T	C	6.691e^-4	0.807	SYNONYMOUS_CODING CG42780 DOWNSTREAM CG18155 INTRON CR44357 & 1 other
3L	19230445	3L_19230445_SNP [dm3] 3L_19237345_SNP [dm6]	A	T	6.933e^-4	0.807	DOWNSTREAM CG33647 INTERGENIC
2L	15031103	2L_15031103_SNP [dm3] 2L_15031103_SNP [dm6]	C	T	7.006e^-4	0.807	INTRON GABA-B-R1 & 1 other
2R	11473312	2R_11473312_SNP [dm3] 2R_15585807_SNP [dm6]	C	A	7.006e^-4	0.807	INTERGENIC
2R	12974349	2R_12974349_SNP [dm3] 2R_17086844_SNP [dm6]	T	C	7.006e^-4	0.807	INTRON CG30460
2R	12974381	2R_12974381_SNP [dm3] 2R_17086876_SNP [dm6]	A	G	7.006e^-4	0.807	INTRON CG30460	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	18750833	X_18750833_SNP [dm3] X_18856800_SNP [dm6]	G	T	7.006e^-4	0.807	DOWNSTREAM CG34422 INTRON CG7322
X	6974231	X_6974231_SNP [dm3] X_7080198_SNP [dm6]	G	T	7.006e^-4	0.807	INTRON Sxl
X	6974243	X_6974243_SNP [dm3] X_7080210_SNP [dm6]	T	C	7.006e^-4	0.807	INTRON Sxl
3L	16755483	3L_16755483_SNP [dm3] 3L_16762383_SNP [dm6]	T	G	7.033e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9295083	3L_9295083_SNP [dm3] 3L_9301983_SNP [dm6]	T	C	7.033e^-4	0.807	INTERGENIC
X	9655654	X_9655654_INS [dm3] X_9761621_INS [dm6]	A	AA	7.033e^-4	0.807	INTERGENIC
2L	12323565	2L_12323565_SNP [dm3] 2L_12323565_SNP [dm6]	T	C	7.231e^-4	0.807	INTERGENIC
2L	13694734	2L_13694734_SNP [dm3] 2L_13694734_SNP [dm6]	C	T	7.231e^-4	0.807	INTRON CG31814
2L	14153894	2L_14153894_SNP [dm3] 2L_14153894_SNP [dm6]	G	C	7.231e^-4	0.807	INTRON CG17341
2L	14429246	2L_14429246_SNP [dm3] 2L_14429246_SNP [dm6]	G	A	7.231e^-4	0.807	EXON CR44732	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	1553953	2L_1553953_SNP [dm3] 2L_1553953_SNP [dm6]	C	T	7.231e^-4	0.807	INTERGENIC
2L	1562616	2L_1562616_SNP [dm3] 2L_1562616_SNP [dm6]	A	T	7.231e^-4	0.807	INTRON haf
2L	1562761	2L_1562761_SNP [dm3] 2L_1562761_SNP [dm6]	C	T	7.231e^-4	0.807	INTRON haf
2L	1562765	2L_1562765_SNP [dm3] 2L_1562765_SNP [dm6]	A	T	7.231e^-4	0.807	INTRON haf
2L	1562777	2L_1562777_SNP [dm3] 2L_1562777_SNP [dm6]	A	T	7.231e^-4	0.807	INTRON haf
2L	16398527	2L_16398527_SNP [dm3] 2L_16398527_SNP [dm6]	G	T	7.231e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398598	2L_16398598_SNP [dm3] 2L_16398598_SNP [dm6]	A	T	7.231e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398600	2L_16398600_SNP [dm3] 2L_16398600_SNP [dm6]	A	T	7.231e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16398611	2L_16398611_SNP [dm3] 2L_16398611_SNP [dm6]	T	A	7.231e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	16954224	2L_16954224_SNP [dm3] 2L_16954224_SNP [dm6]	T	C	7.231e^-4	0.807	INTERGENIC
2L	16973707	2L_16973707_SNP [dm3] 2L_16973707_SNP [dm6]	A	T	7.231e^-4	0.807	INTRON beat-IIIb
2L	17023443	2L_17023443_SNP [dm3] 2L_17023443_SNP [dm6]	T	A	7.231e^-4	0.807	INTERGENIC
2L	17842251	2L_17842251_SNP [dm3] 2L_17842251_SNP [dm6]	C	T	7.231e^-4	0.807	INTRON CadN2
2L	17842333	2L_17842333_SNP [dm3] 2L_17842333_SNP [dm6]	A	G	7.231e^-4	0.807	INTRON CadN2
2L	19842681	2L_19842681_SNP [dm3] 2L_19842681_SNP [dm6]	G	C	7.231e^-4	0.807	INTRON sick
2L	19983890	2L_19983890_SNP [dm3] 2L_19983890_SNP [dm6]	C	T	7.231e^-4	0.807	INTRON CG43861
2L	3417630	2L_3417630_SNP [dm3] 2L_3417630_SNP [dm6]	T	C	7.231e^-4	0.807	UTR_3_PRIME CG31952 INTRON pgant2
2L	4053018	2L_4053018_SNP [dm3] 2L_4053018_SNP [dm6]	T	C	7.231e^-4	0.807	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4091840	2L_4091840_SNP [dm3] 2L_4091840_SNP [dm6]	C	G	7.231e^-4	0.807	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	4091841	2L_4091841_SNP [dm3] 2L_4091841_SNP [dm6]	G	C	7.231e^-4	0.807	INTRON ed	TF binding site BDTNP1_TFBS_twi
2L	7336450	2L_7336450_SNP [dm3] 2L_7336450_SNP [dm6]	G	T	7.231e^-4	0.807	INTRON Wnt6
2R	11872340	2R_11872340_DEL [dm3] 2R_15984835_DEL [dm6]	AA	C	7.231e^-4	0.807	INTRON Strn-Mlck
2R	13633863	2R_13633863_SNP [dm3] 2R_17746358_SNP [dm6]	G	C	7.231e^-4	0.807	SYNONYMOUS_CODING sub DOWNSTREAM Ir54a
2R	13650070	2R_13650070_SNP [dm3] 2R_17762565_SNP [dm6]	C	T	7.231e^-4	0.807	SYNONYMOUS_CODING CG5009
2R	13650103	2R_13650103_SNP [dm3] 2R_17762598_SNP [dm6]	T	A	7.231e^-4	0.807	SYNONYMOUS_CODING CG5009
2R	13650235	2R_13650235_SNP [dm3] 2R_17762730_SNP [dm6]	A	G	7.231e^-4	0.807	SYNONYMOUS_CODING CG5009
2R	14564439	2R_14564439_SNP [dm3] 2R_18676934_SNP [dm6]	C	T	7.231e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14882971	2R_14882971_SNP [dm3] 2R_18995466_SNP [dm6]	G	A	7.231e^-4	0.807	DOWNSTREAM snoRNA:abba-a INTRON tn
2R	15700522	2R_15700522_SNP [dm3] 2R_19813017_SNP [dm6]	G	A	7.231e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6927471	2R_6927471_SNP [dm3] 2R_11039966_SNP [dm6]	C	T	7.231e^-4	0.807	INTRON luna
2R	8498731	2R_8498731_SNP [dm3] 2R_12611226_SNP [dm6]	C	T	7.231e^-4	0.807	UTR_3_PRIME Amph
2R	8665336	2R_8665336_MNP [dm3] 2R_12777831_MNP [dm6]	TTGTTT	CCAAGC	7.231e^-4	0.807	EXON CR45266	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8665343	2R_8665343_SNP [dm3] 2R_12777838_SNP [dm6]	T	A	7.231e^-4	0.807	EXON CR45266	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8665346	2R_8665346_SNP [dm3] 2R_12777841_SNP [dm6]	A	T	7.231e^-4	0.807	EXON CR45266	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8665348	2R_8665348_SNP [dm3] 2R_12777843_SNP [dm6]	T	C	7.231e^-4	0.807	EXON CR45266	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9730076	2R_9730076_SNP [dm3] 2R_13842571_SNP [dm6]	C	T	7.231e^-4	0.807	UTR_3_PRIME Syngr DOWNSTREAM CG6357
3L	12816067	3L_12816067_SNP [dm3] 3L_12822967_SNP [dm6]	A	C	7.231e^-4	0.807	INTRON CG42588
3L	1413673	3L_1413673_SNP [dm3] 3L_1413673_SNP [dm6]	G	C	7.231e^-4	0.807	DOWNSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14153966	3L_14153966_SNP [dm3] 3L_14160866_SNP [dm6]	C	G	7.231e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs
3L	2175055	3L_2175055_SNP [dm3] 3L_2175055_SNP [dm6]	C	T	7.231e^-4	0.807	UPSTREAM CG15820 INTERGENIC
3L	7260321	3L_7260321_SNP [dm3] 3L_7267221_SNP [dm6]	T	C	7.231e^-4	0.807	UTR_3_PRIME unc-13-4A DOWNSTREAM unc-13-4A
3L	7875428	3L_7875428_SNP [dm3] 3L_7882328_SNP [dm6]	A	G	7.231e^-4	0.807	INTRON CG32365
3L	9681331	3L_9681331_SNP [dm3] 3L_9688231_SNP [dm6]	A	T	7.231e^-4	0.807	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9681336	3L_9681336_SNP [dm3] 3L_9688236_SNP [dm6]	C	G	7.231e^-4	0.807	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9681510	3L_9681510_SNP [dm3] 3L_9688410_SNP [dm6]	G	C	7.231e^-4	0.807	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9682150	3L_9682150_INS [dm3] 3L_9689050_INS [dm6]	A	AA	7.231e^-4	0.807	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9682204	3L_9682204_SNP [dm3] 3L_9689104_SNP [dm6]	C	A	7.231e^-4	0.807	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9682284	3L_9682284_SNP [dm3] 3L_9689184_SNP [dm6]	T	A	7.231e^-4	0.807	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9682295	3L_9682295_INS [dm3] 3L_9689195_INS [dm6]	G	GGGT	7.231e^-4	0.807	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9682306	3L_9682306_SNP [dm3] 3L_9689206_SNP [dm6]	T	A	7.231e^-4	0.807	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9682307	3L_9682307_SNP [dm3] 3L_9689207_SNP [dm6]	A	T	7.231e^-4	0.807	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9682327	3L_9682327_SNP [dm3] 3L_9689227_SNP [dm6]	A	T	7.231e^-4	0.807	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15881230	3R_15881230_SNP [dm3] 3R_20055508_SNP [dm6]	T	G	7.231e^-4	0.807	DOWNSTREAM CG4390 INTRON CG17193
3R	15881288	3R_15881288_SNP [dm3] 3R_20055566_SNP [dm6]	A	G	7.231e^-4	0.807	DOWNSTREAM CG4390 INTRON CG17193
3R	15881301	3R_15881301_SNP [dm3] 3R_20055579_SNP [dm6]	T	G	7.231e^-4	0.807	DOWNSTREAM CG4390 INTRON CG17193
X	10307941	X_10307941_SNP [dm3] X_10413908_SNP [dm6]	A	G	7.231e^-4	0.807	INTRON CG32683
X	10307955	X_10307955_SNP [dm3] X_10413922_SNP [dm6]	G	A	7.231e^-4	0.807	INTRON CG32683
X	13829761	X_13829761_SNP [dm3] X_13935728_SNP [dm6]	G	T	7.231e^-4	0.807	INTRON mamo
X	13829771	X_13829771_SNP [dm3] X_13935738_SNP [dm6]	G	C	7.231e^-4	0.807	INTRON mamo
X	13829786	X_13829786_SNP [dm3] X_13935753_SNP [dm6]	A	T	7.231e^-4	0.807	INTRON mamo
X	13829787	X_13829787_SNP [dm3] X_13935754_SNP [dm6]	T	A	7.231e^-4	0.807	INTRON mamo
X	13829789	X_13829789_SNP [dm3] X_13935756_SNP [dm6]	A	G	7.231e^-4	0.807	INTRON mamo
X	13831978	X_13831978_SNP [dm3] X_13937945_SNP [dm6]	A	C	7.231e^-4	0.807	INTRON mamo
X	15649458	X_15649458_SNP [dm3] X_15755425_SNP [dm6]	C	T	7.231e^-4	0.807	SYNONYMOUS_CODING Graf UPSTREAM CG8260
X	18405243	X_18405243_SNP [dm3] X_18511210_SNP [dm6]	C	G	7.231e^-4	0.807	INTRON Ggt-1
X	3196362	X_3196362_SNP [dm3] X_3302329_SNP [dm6]	A	T	7.231e^-4	0.807	INTRON dnc
X	3196364	X_3196364_SNP [dm3] X_3302331_SNP [dm6]	T	C	7.231e^-4	0.807	INTRON dnc
X	3196368	X_3196368_SNP [dm3] X_3302335_SNP [dm6]	C	T	7.231e^-4	0.807	INTRON dnc
X	3196381	X_3196381_SNP [dm3] X_3302348_SNP [dm6]	T	C	7.231e^-4	0.807	INTRON dnc
X	3196383	X_3196383_SNP [dm3] X_3302350_SNP [dm6]	T	C	7.231e^-4	0.807	INTRON dnc
X	3196433	X_3196433_SNP [dm3] X_3302400_SNP [dm6]	A	G	7.231e^-4	0.807	INTRON dnc
X	3851954	X_3851954_SNP [dm3] X_3957921_SNP [dm6]	G	A	7.231e^-4	0.807	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	18364607	2R_18364607_SNP [dm3] 2R_22477102_SNP [dm6]	G	A	7.298e^-4	0.807	SYNONYMOUS_CODING CG45063 UPSTREAM CG45062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18364623	2R_18364623_SNP [dm3] 2R_22477118_SNP [dm6]	G	A	7.298e^-4	0.807	SYNONYMOUS_CODING CG45063 UPSTREAM CG45062	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19943189	2R_19943189_SNP [dm3] 2R_24055666_SNP [dm6]	A	T	7.298e^-4	0.807	INTRON ppk29 & 1 other	TF binding site mE1_TFBS_chinmo
2R	7218120	2R_7218120_SNP [dm3] 2R_11330615_SNP [dm6]	A	G	7.298e^-4	0.807	INTRON sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19179690	3R_19179690_SNP [dm3] 3R_23353968_SNP [dm6]	T	C	7.298e^-4	0.807	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19179984	3R_19179984_SNP [dm3] 3R_23354262_SNP [dm6]	A	G	7.298e^-4	0.807	SYNONYMOUS_CODING DNApol-epsilon DOWNSTREAM ATPsyn-Cf6	TF binding site mE1_TFBS_sens
2L	10862842	2L_10862842_SNP [dm3] 2L_10862842_SNP [dm6]	G	T	7.314e^-4	0.807	DOWNSTREAM Stam EXON CR43807
2L	11388322	2L_11388322_SNP [dm3] 2L_11388322_SNP [dm6]	G	T	7.314e^-4	0.807	EXON CR43681	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	1251649	2L_1251649_SNP [dm3] 2L_1251649_SNP [dm6]	T	C	7.314e^-4	0.807	INTERGENIC
2L	16223704	2L_16223704_SNP [dm3] 2L_16223704_SNP [dm6]	A	T	7.314e^-4	0.807	INTERGENIC
2L	1631294	2L_1631294_SNP [dm3] 2L_1631294_SNP [dm6]	A	G	7.314e^-4	0.807	INTERGENIC
2L	21926543	2L_21926543_SNP [dm3] 2L_21926543_SNP [dm6]	G	A	7.314e^-4	0.807	INTERGENIC
2L	21970591	2L_21970591_SNP [dm3] 2L_21970591_SNP [dm6]	A	G	7.314e^-4	0.807	INTERGENIC
2L	5090536	2L_5090536_SNP [dm3] 2L_5090536_SNP [dm6]	T	C	7.314e^-4	0.807	INTRON pgant5
2R	10328641	2R_10328641_SNP [dm3] 2R_14441136_SNP [dm6]	T	G	7.314e^-4	0.807	INTRON Oaz
2R	12675029	2R_12675029_SNP [dm3] 2R_16787524_SNP [dm6]	A	T	7.314e^-4	0.807	INTRON CG5522
2R	12675031	2R_12675031_DEL [dm3] 2R_16787526_DEL [dm6]	TAAATATGTTTCTCCTTTAA...	T	7.314e^-4	0.807	INTRON CG5522
2R	12675091	2R_12675091_SNP [dm3] 2R_16787586_SNP [dm6]	T	C	7.314e^-4	0.807	INTRON CG5522
2R	12675104	2R_12675104_SNP [dm3] 2R_16787599_SNP [dm6]	A	G	7.314e^-4	0.807	INTRON CG5522
2R	12675118	2R_12675118_SNP [dm3] 2R_16787613_SNP [dm6]	C	A	7.314e^-4	0.807	INTRON CG5522
2R	12675130	2R_12675130_SNP [dm3] 2R_16787625_SNP [dm6]	G	A	7.314e^-4	0.807	INTRON CG5522
2R	13091735	2R_13091735_SNP [dm3] 2R_17204230_SNP [dm6]	A	G	7.314e^-4	0.807	UPSTREAM CG43237 INTERGENIC
2R	13606692	2R_13606692_SNP [dm3] 2R_17719187_SNP [dm6]	G	A	7.314e^-4	0.807	UTR_5_PRIME CG6424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_Kr mE1_TFBS_Trl
2R	16060948	2R_16060948_SNP [dm3] 2R_20173443_SNP [dm6]	T	C	7.314e^-4	0.807	INTERGENIC
2R	19320273	2R_19320273_SNP [dm3] 2R_23432750_SNP [dm6]	G	A	7.314e^-4	0.807	UPSTREAM CG9815 INTRON CG9815
2R	5863941	2R_5863941_SNP [dm3] 2R_9976436_SNP [dm6]	G	C	7.314e^-4	0.807	DOWNSTREAM CR43948 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6753374	2R_6753374_SNP [dm3] 2R_10865869_SNP [dm6]	A	G	7.314e^-4	0.807	INTRON CG30015
2R	6753756	2R_6753756_SNP [dm3] 2R_10866251_SNP [dm6]	C	T	7.314e^-4	0.807	INTRON CG30015
2R	6753824	2R_6753824_SNP [dm3] 2R_10866319_SNP [dm6]	G	A	7.314e^-4	0.807	INTRON CG30015
2R	6753851	2R_6753851_SNP [dm3] 2R_10866346_SNP [dm6]	T	A	7.314e^-4	0.807	INTRON CG30015
2R	6754032	2R_6754032_SNP [dm3] 2R_10866527_SNP [dm6]	G	A	7.314e^-4	0.807	INTRON CG30015
2R	6754408	2R_6754408_SNP [dm3] 2R_10866903_SNP [dm6]	C	G	7.314e^-4	0.807	INTRON CG30015
2R	6754417	2R_6754417_SNP [dm3] 2R_10866912_SNP [dm6]	T	C	7.314e^-4	0.807	INTRON CG30015
2R	6754419	2R_6754419_SNP [dm3] 2R_10866914_SNP [dm6]	T	A	7.314e^-4	0.807	INTRON CG30015
2R	6754449	2R_6754449_SNP [dm3] 2R_10866944_SNP [dm6]	T	C	7.314e^-4	0.807	INTRON CG30015
3L	1280633	3L_1280633_SNP [dm3] 3L_1280633_SNP [dm6]	G	T	7.314e^-4	0.807	INTRON CG32333
3L	1324052	3L_1324052_SNP [dm3] 3L_1324052_SNP [dm6]	T	C	7.314e^-4	0.807	UPSTREAM Myo61F INTRON Myo61F EXON CR45166
3L	1361975	3L_1361975_SNP [dm3] 3L_1361975_SNP [dm6]	G	A	7.314e^-4	0.807	INTRON Ptp61F
3L	1386304	3L_1386304_SNP [dm3] 3L_1386304_SNP [dm6]	T	C	7.314e^-4	0.807	SYNONYMOUS_CODING ru INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	1523902	3L_1523902_SNP [dm3] 3L_1523902_SNP [dm6]	C	T	7.314e^-4	0.807	DOWNSTREAM Psa INTRON CG12090
3L	1523946	3L_1523946_SNP [dm3] 3L_1523946_SNP [dm6]	C	T	7.314e^-4	0.807	SYNONYMOUS_CODING CG12090 DOWNSTREAM Psa
3L	1920339	3L_1920339_DEL [dm3] 3L_1920339_DEL [dm6]	TGCCGCAT	T	7.314e^-4	0.807	UPSTREAM Dbx INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1922279	3L_1922279_SNP [dm3] 3L_1922279_SNP [dm6]	C	T	7.314e^-4	0.807	INTRON Dbx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1946360	3L_1946360_SNP [dm3] 3L_1946360_SNP [dm6]	A	T	7.314e^-4	0.807	SYNONYMOUS_CODING mu2
3L	1946386	3L_1946386_SNP [dm3] 3L_1946386_SNP [dm6]	A	G	7.314e^-4	0.807	SYNONYMOUS_CODING mu2	TF binding site mE1_TFBS_sens
3L	1952407	3L_1952407_SNP [dm3] 3L_1952407_SNP [dm6]	T	C	7.314e^-4	0.807	SYNONYMOUS_CODING mv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2169651	3L_2169651_SNP [dm3] 3L_2169651_SNP [dm6]	G	C	7.314e^-4	0.807	UTR_3_PRIME CG5704 UPSTREAM CG15879
3L	713048	3L_713048_SNP [dm3] 3L_713048_SNP [dm6]	G	C	7.314e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_sens
X	12158909	X_12158909_SNP [dm3] X_12264876_SNP [dm6]	C	G	7.314e^-4	0.807	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16961255	X_16961255_SNP [dm3] X_17067222_SNP [dm6]	T	G	7.314e^-4	0.807	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
X	16961259	X_16961259_SNP [dm3] X_17067226_SNP [dm6]	T	C	7.314e^-4	0.807	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
X	17232562	X_17232562_SNP [dm3] X_17338529_SNP [dm6]	A	G	7.314e^-4	0.807	INTERGENIC
X	17232773	X_17232773_SNP [dm3] X_17338740_SNP [dm6]	A	G	7.314e^-4	0.807	INTERGENIC
X	2667299	X_2667299_SNP [dm3] X_2773266_SNP [dm6]	C	T	7.314e^-4	0.807	INTRON kirre
X	5328646	X_5328646_SNP [dm3] X_5434613_SNP [dm6]	G	C	7.314e^-4	0.807	INTRON CR44471
X	5571880	X_5571880_SNP [dm3] X_5677847_SNP [dm6]	A	C	7.314e^-4	0.807	UPSTREAM Tre1 INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	944800	X_944800_SNP [dm3] X_1050767_SNP [dm6]	C	T	7.314e^-4	0.807	UPSTREAM CG14629 INTRON CR44779	TF binding site BDTNP1_TFBS_z
2L	10512399	2L_10512399_SNP [dm3] 2L_10512399_SNP [dm6]	C	A	7.395e^-4	0.807	SYNONYMOUS_CODING Fatp UTR_3_PRIME CG45083	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1359107	3L_1359107_SNP [dm3] 3L_1359107_SNP [dm6]	C	T	7.453e^-4	0.807	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	22957113	2L_22957113_SNP [dm3] 2L_23064381_SNP [dm6]	T	G	7.473e^-4	0.807	INTERGENIC
2L	22957115	2L_22957115_SNP [dm3] 2L_23064383_SNP [dm6]	T	A	7.473e^-4	0.807	INTERGENIC
2L	1377562	2L_1377562_SNP [dm3] 2L_1377562_SNP [dm6]	A	C	8.359e^-4	0.807	INTERGENIC
2L	1377565	2L_1377565_SNP [dm3] 2L_1377565_SNP [dm6]	A	G	8.359e^-4	0.807	INTERGENIC
2L	13875481	2L_13875481_SNP [dm3] 2L_13875481_SNP [dm6]	C	G	8.359e^-4	0.807	INTRON CenG1A
2L	13875606	2L_13875606_SNP [dm3] 2L_13875606_SNP [dm6]	T	C	8.359e^-4	0.807	INTRON CenG1A
2L	13875608	2L_13875608_SNP [dm3] 2L_13875608_SNP [dm6]	T	A	8.359e^-4	0.807	INTRON CenG1A
2L	15770185	2L_15770185_SNP [dm3] 2L_15770185_SNP [dm6]	G	A	8.359e^-4	0.807	SYNONYMOUS_CODING Ku80
2L	17125655	2L_17125655_SNP [dm3] 2L_17125655_SNP [dm6]	G	A	8.359e^-4	0.807	NON_SYNONYMOUS_CODING CG31784
2L	17125656	2L_17125656_SNP [dm3] 2L_17125656_SNP [dm6]	T	C	8.359e^-4	0.807	NON_SYNONYMOUS_CODING CG31784
2L	17125689	2L_17125689_SNP [dm3] 2L_17125689_SNP [dm6]	T	G	8.359e^-4	0.807	NON_SYNONYMOUS_CODING CG31784
2L	17854360	2L_17854360_SNP [dm3] 2L_17854360_SNP [dm6]	G	A	8.359e^-4	0.807	INTRON CadN2
2L	17854813	2L_17854813_SNP [dm3] 2L_17854813_SNP [dm6]	T	C	8.359e^-4	0.807	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17854854	2L_17854854_SNP [dm3] 2L_17854854_SNP [dm6]	G	A	8.359e^-4	0.807	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17854879	2L_17854879_SNP [dm3] 2L_17854879_SNP [dm6]	A	G	8.359e^-4	0.807	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17856533	2L_17856533_SNP [dm3] 2L_17856533_SNP [dm6]	C	A	8.359e^-4	0.807	INTRON CadN2
2L	20599174	2L_20599174_SNP [dm3] 2L_20599174_SNP [dm6]	T	A	8.359e^-4	0.807	INTRON CR44909	TF binding site BDTNP1_TFBS_twi
2L	22085001	2L_22085001_SNP [dm3] 2L_22085001_SNP [dm6]	A	G	8.359e^-4	0.807	INTERGENIC
2L	2881574	2L_2881574_SNP [dm3] 2L_2881574_SNP [dm6]	A	G	8.359e^-4	0.807	SYNONYMOUS_CODING NTPase DOWNSTREAM betaggt-II	TF binding site mE1_TFBS_chinmo
2L	3043961	2L_3043961_SNP [dm3] 2L_3043961_SNP [dm6]	C	T	8.359e^-4	0.807	START_GAINED v_2_k05816 UTR_5_PRIME v_2_k05816 DOWNSTREAM CG17261
2L	5611035	2L_5611035_SNP [dm3] 2L_5611035_SNP [dm6]	A	G	8.359e^-4	0.807	SYNONYMOUS_CODING CG14010
2L	5611038	2L_5611038_SNP [dm3] 2L_5611038_SNP [dm6]	G	T	8.359e^-4	0.807	SYNONYMOUS_CODING CG14010
2L	7432732	2L_7432732_SNP [dm3] 2L_7432732_SNP [dm6]	T	C	8.359e^-4	0.807	INTRON CG5958
2L	7432743	2L_7432743_SNP [dm3] 2L_7432743_SNP [dm6]	T	C	8.359e^-4	0.807	INTRON CG5958
2L	7454447	2L_7454447_SNP [dm3] 2L_7454447_SNP [dm6]	T	C	8.359e^-4	0.807	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
2L	9800174	2L_9800174_SNP [dm3] 2L_9800174_SNP [dm6]	A	T	8.359e^-4	0.807	INTRON nAChRalpha6
2R	11340342	2R_11340342_SNP [dm3] 2R_15452837_SNP [dm6]	G	T	8.359e^-4	0.807	INTRON CG43729
2R	11542386	2R_11542386_SNP [dm3] 2R_15654881_SNP [dm6]	G	T	8.359e^-4	0.807	INTRON CG42524
2R	13648614	2R_13648614_SNP [dm3] 2R_17761109_SNP [dm6]	C	A	8.359e^-4	0.807	UTR_5_PRIME CG5009 DOWNSTREAM HLH54F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14586430	2R_14586430_SNP [dm3] 2R_18698925_SNP [dm6]	A	T	8.359e^-4	0.807	INTRON Sik3
2R	15480689	2R_15480689_SNP [dm3] 2R_19593184_SNP [dm6]	A	T	8.359e^-4	0.807	UPSTREAM CG16716 INTRON sm
2R	16007514	2R_16007514_SNP [dm3] 2R_20120009_SNP [dm6]	G	A	8.359e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16997110	2R_16997110_SNP [dm3] 2R_21109605_SNP [dm6]	T	C	8.359e^-4	0.807	INTRON ktub
2R	16999541	2R_16999541_SNP [dm3] 2R_21112036_SNP [dm6]	T	A	8.359e^-4	0.807	INTRON ktub
2R	18002707	2R_18002707_SNP [dm3] 2R_22115202_SNP [dm6]	A	T	8.359e^-4	0.807	SYNONYMOUS_CODING CG30281 DOWNSTREAM CG30280 INTRON Vrp1
2R	2423152	2R_2423152_SNP [dm3] 2R_6535647_SNP [dm6]	T	G	8.359e^-4	0.807	INTRON jing
2R	3582364	2R_3582364_SNP [dm3] 2R_7694859_SNP [dm6]	A	G	8.359e^-4	0.807	INTRON CG1399	TF binding site mE1_TFBS_inv
2R	3582368	2R_3582368_SNP [dm3] 2R_7694863_SNP [dm6]	A	G	8.359e^-4	0.807	INTRON CG1399	TF binding site mE1_TFBS_inv
2R	3582379	2R_3582379_SNP [dm3] 2R_7694874_SNP [dm6]	G	A	8.359e^-4	0.807	INTRON CG1399	TF binding site mE1_TFBS_inv
2R	3814240	2R_3814240_SNP [dm3] 2R_7926735_SNP [dm6]	A	G	8.359e^-4	0.807	UTR_5_PRIME CG8791 UPSTREAM CG8791
2R	9811990	2R_9811990_SNP [dm3] 2R_13924485_SNP [dm6]	A	T	8.359e^-4	0.807	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9811997	2R_9811997_SNP [dm3] 2R_13924492_SNP [dm6]	T	A	8.359e^-4	0.807	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9812138	2R_9812138_INS [dm3] 2R_13924633_INS [dm6]	A	AACAA	8.359e^-4	0.807	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9812153	2R_9812153_SNP [dm3] 2R_13924648_SNP [dm6]	A	G	8.359e^-4	0.807	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9812238	2R_9812238_SNP [dm3] 2R_13924733_SNP [dm6]	T	G	8.359e^-4	0.807	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9812339	2R_9812339_DEL [dm3] 2R_13924834_DEL [dm6]	AA	A	8.359e^-4	0.807	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10213040	3L_10213040_SNP [dm3] 3L_10219940_SNP [dm6]	A	C	8.359e^-4	0.807	SYNONYMOUS_CODING CG32055 DOWNSTREAM scramb1
3L	10214263	3L_10214263_DEL [dm3] 3L_10221163_DEL [dm6]	AAAACAGACAGAA...	TGTGGGT	8.359e^-4	0.807	UPSTREAM CG32055 INTRON scramb1	TF binding site mE1_TFBS_cad
3L	10214337	3L_10214337_SNP [dm3] 3L_10221237_SNP [dm6]	A	G	8.359e^-4	0.807	INTRON scramb1	TF binding site mE1_TFBS_cad
3L	10215790	3L_10215790_SNP [dm3] 3L_10222690_SNP [dm6]	T	A	8.359e^-4	0.807	INTRON scramb1
3L	10215844	3L_10215844_SNP [dm3] 3L_10222744_SNP [dm6]	G	A	8.359e^-4	0.807	INTRON scramb1
3L	10215875	3L_10215875_SNP [dm3] 3L_10222775_SNP [dm6]	A	G	8.359e^-4	0.807	INTRON scramb1
3L	10215944	3L_10215944_SNP [dm3] 3L_10222844_SNP [dm6]	A	T	8.359e^-4	0.807	INTRON scramb1
3L	10216920	3L_10216920_SNP [dm3] 3L_10223820_SNP [dm6]	C	T	8.359e^-4	0.807	UPSTREAM scramb1 INTRON scramb1
3L	10218267	3L_10218267_SNP [dm3] 3L_10225167_SNP [dm6]	C	T	8.359e^-4	0.807	UTR_5_PRIME scramb1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10218287	3L_10218287_SNP [dm3] 3L_10225187_SNP [dm6]	C	A	8.359e^-4	0.807	UTR_5_PRIME scramb1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10218312	3L_10218312_SNP [dm3] 3L_10225212_SNP [dm6]	G	A	8.359e^-4	0.807	START_GAINED scramb1 UTR_5_PRIME scramb1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10219826	3L_10219826_SNP [dm3] 3L_10226726_SNP [dm6]	G	C	8.359e^-4	0.807	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11447771	3L_11447771_SNP [dm3] 3L_11454671_SNP [dm6]	C	T	8.359e^-4	0.807	INTERGENIC
3L	13891424	3L_13891424_SNP [dm3] 3L_13898324_SNP [dm6]	G	T	8.359e^-4	0.807	INTRON dysc
3L	15621758	3L_15621758_SNP [dm3] 3L_15628658_SNP [dm6]	T	A	8.359e^-4	0.807	INTRON comm3
3L	15626419	3L_15626419_SNP [dm3] 3L_15633319_SNP [dm6]	T	A	8.359e^-4	0.807	UPSTREAM comm3 INTRON comm3
3L	2683534	3L_2683534_SNP [dm3] 3L_2683534_SNP [dm6]	C	T	8.359e^-4	0.807	INTRON Fife
3L	3116262	3L_3116262_SNP [dm3] 3L_3116262_SNP [dm6]	A	G	8.359e^-4	0.807	INTRON prominin-like
3L	3272857	3L_3272857_DEL [dm3] 3L_3272857_DEL [dm6]	GCACAAG	CTTA	8.359e^-4	0.807	INTRON CG14960
3L	3272873	3L_3272873_SNP [dm3] 3L_3272873_SNP [dm6]	A	T	8.359e^-4	0.807	INTRON CG14960
3L	3731314	3L_3731314_SNP [dm3] 3L_3731314_SNP [dm6]	T	C	8.359e^-4	0.807	INTRON CG32264
3L	5269569	3L_5269569_SNP [dm3] 3L_5276469_SNP [dm6]	T	G	8.359e^-4	0.807	INTRON shep	TF binding site BDTNP1_TFBS_dl
3L	5358636	3L_5358636_SNP [dm3] 3L_5365536_SNP [dm6]	A	C	8.359e^-4	0.807	UTR_5_PRIME Uev1A UPSTREAM Membrin INTRON Uev1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3L	591440	3L_591440_SNP [dm3] 3L_591440_SNP [dm6]	A	G	8.359e^-4	0.807	INTERGENIC
3L	8586247	3L_8586247_SNP [dm3] 3L_8593147_SNP [dm6]	C	T	8.359e^-4	0.807	INTRON CG43078	TF binding site mE1_TFBS_cad
3L	8586249	3L_8586249_SNP [dm3] 3L_8593149_SNP [dm6]	C	A	8.359e^-4	0.807	INTRON CG43078	TF binding site mE1_TFBS_cad
3L	9083600	3L_9083600_SNP [dm3] 3L_9090500_SNP [dm6]	G	C	8.359e^-4	0.807	SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad
X	19321857	X_19321857_SNP [dm3] X_19427824_SNP [dm6]	G	C	8.359e^-4	0.807	INTRON kek5
X	3475395	X_3475395_SNP [dm3] X_3581362_SNP [dm6]	A	T	8.359e^-4	0.807	INTRON AstA-R1
X	6485502	X_6485502_SNP [dm3] X_6591469_SNP [dm6]	C	A	8.359e^-4	0.807	UTR_5_PRIME Pat1 DOWNSTREAM CG17717	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	6517830	X_6517830_SNP [dm3] X_6623797_SNP [dm6]	G	A	8.359e^-4	0.807	INTRON pigs	TF binding site BDTNP1_TFBS_dl
X	9803825	X_9803825_SNP [dm3] X_9909792_SNP [dm6]	G	A	8.359e^-4	0.807	SYNONYMOUS_CODING CG1986	TF binding site mE1_TFBS_chinmo
X	9803910	X_9803910_SNP [dm3] X_9909877_SNP [dm6]	C	G	8.359e^-4	0.807	INTRON CG1986	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9803911	X_9803911_SNP [dm3] X_9909878_SNP [dm6]	G	C	8.359e^-4	0.807	INTRON CG1986	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9803925	X_9803925_SNP [dm3] X_9909892_SNP [dm6]	A	G	8.359e^-4	0.807	INTRON CG1986	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9803928	X_9803928_SNP [dm3] X_9909895_SNP [dm6]	A	C	8.359e^-4	0.807	INTRON CG1986	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9803953	X_9803953_SNP [dm3] X_9909920_SNP [dm6]	T	A	8.359e^-4	0.807	INTRON CG1986	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9803969	X_9803969_SNP [dm3] X_9909936_SNP [dm6]	T	A	8.359e^-4	0.807	INTRON CG1986	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14871181	2R_14871181_SNP [dm3] 2R_18983676_SNP [dm6]	T	G	8.592e^-4	0.807	INTERGENIC
2L	13688783	2L_13688783_SNP [dm3] 2L_13688783_SNP [dm6]	A	G	8.699e^-4	0.807	INTRON CG31814
2L	20260113	2L_20260113_INS [dm3] 2L_20260113_INS [dm6]	C	CC	8.699e^-4	0.807	INTERGENIC
2L	22361945	2L_22361945_SNP [dm3] 2L_22361945_SNP [dm6]	A	C	8.699e^-4	0.807	INTRON CG17018
X	16961007	X_16961007_SNP [dm3] X_17066974_SNP [dm6]	C	A	8.699e^-4	0.807	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
2R	17740266	2R_17740266_SNP [dm3] 2R_21852761_SNP [dm6]	C	A	8.963e^-4	0.807	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10225004	3L_10225004_SNP [dm3] 3L_10231904_SNP [dm6]	C	G	8.963e^-4	0.807	INTERGENIC
3L	10225450	3L_10225450_SNP [dm3] 3L_10232350_SNP [dm6]	C	G	8.963e^-4	0.807	INTERGENIC
3L	17108796	3L_17108796_SNP [dm3] 3L_17115696_SNP [dm6]	T	A	8.963e^-4	0.807	INTRON Rbp6
3L	17117821	3L_17117821_INS [dm3] 3L_17124721_INS [dm6]	C	CTAGCCAGC	8.963e^-4	0.807	INTRON Rbp6
3L	17118569	3L_17118569_SNP [dm3] 3L_17125469_SNP [dm6]	G	T	8.963e^-4	0.807	INTRON Rbp6
3L	17526987	3L_17526987_SNP [dm3] 3L_17533887_SNP [dm6]	T	C	8.963e^-4	0.807	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9061158	3L_9061158_SNP [dm3] 3L_9068058_SNP [dm6]	A	G	8.963e^-4	0.807	UTR_3_PRIME CG4911
2R	19410375	2R_19410375_SNP [dm3] 2R_23522852_SNP [dm6]	G	A	9.119e^-4	0.807	INTRON RabX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
2R	19595447	2R_19595447_SNP [dm3] 2R_23707924_SNP [dm6]	T	C	9.119e^-4	0.807	SYNONYMOUS_CODING l_2_tid INTRON l_2_not	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19596754	2R_19596754_SNP [dm3] 2R_23709231_SNP [dm6]	A	T	9.119e^-4	0.807	DOWNSTREAM l_2_tid INTRON l_2_not EXON CR45326	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	11348513	3L_11348513_SNP [dm3] 3L_11355413_SNP [dm6]	A	G	9.119e^-4	0.807	INTERGENIC
3L	6799554	3L_6799554_SNP [dm3] 3L_6806454_SNP [dm6]	G	A	9.119e^-4	0.807	INTERGENIC	regulatory region REDfly_CRMs
3L	7325971	3L_7325971_SNP [dm3] 3L_7332871_SNP [dm6]	T	A	9.119e^-4	0.807	NON_SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other	TF binding site mE1_TFBS_sens
3L	8586542	3L_8586542_SNP [dm3] 3L_8593442_SNP [dm6]	C	T	9.119e^-4	0.807	INTRON CG43078
3L	1941124	3L_1941124_SNP [dm3] 3L_1941124_SNP [dm6]	G	A	9.249e^-4	0.807	UTR_5_PRIME Mfap1 UPSTREAM CR44536	TF binding site mE1_TFBS_cad
2L	15807044	2L_15807044_DEL [dm3] 2L_15807044_DEL [dm6]	GTTTATATTATTATT...	A	9.820e^-4	0.807	DOWNSTREAM CR44602 INTERGENIC
2L	15807143	2L_15807143_SNP [dm3] 2L_15807143_SNP [dm6]	C	T	9.820e^-4	0.807	DOWNSTREAM CR44602 INTERGENIC
2L	15807144	2L_15807144_SNP [dm3] 2L_15807144_SNP [dm6]	T	G	9.820e^-4	0.807	DOWNSTREAM CR44602 INTERGENIC
2R	12974337	2R_12974337_SNP [dm3] 2R_17086832_SNP [dm6]	T	G	9.820e^-4	0.807	INTRON CG30460
2R	9729742	2R_9729742_SNP [dm3] 2R_13842237_SNP [dm6]	C	A	9.820e^-4	0.807	UTR_3_PRIME Syngr DOWNSTREAM CG6357
X	16618804	X_16618804_SNP [dm3] X_16724771_SNP [dm6]	A	G	9.820e^-4	0.807	INTRON CG32572
3L	3591587	3L_3591587_SNP [dm3] 3L_3591587_SNP [dm6]	C	T	9.912e^-4	0.807	INTRON Eip63E
3L	7864325	3L_7864325_SNP [dm3] 3L_7871225_SNP [dm6]	G	A	9.940e^-4	0.807	INTRON CG32365

Missing results

By genomic position
Variant impact
Gene name

Pa14 LT50 (Wang et al 2017) phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results