DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.131e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.7555	0.0563

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1117 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	16931983	2R_16931983_SNP [dm3] 2R_21044478_SNP [dm6]	C	A	3.913e^-6	0.924	INTERGENIC
2R	7255745	2R_7255745_SNP [dm3] 2R_11368240_SNP [dm6]	A	T	3.913e^-6	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl
2R	7255762	2R_7255762_DEL [dm3] 2R_11368257_DEL [dm6]	CC	C	3.913e^-6	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl
3R	25948639	3R_25948639_SNP [dm3] 3R_30122917_SNP [dm6]	G	A	5.926e^-6	0.924	SYNONYMOUS_CODING CG45072 DOWNSTREAM CG45073
3R	25948648	3R_25948648_SNP [dm3] 3R_30122926_SNP [dm6]	C	T	5.926e^-6	0.924	SYNONYMOUS_CODING CG45072 DOWNSTREAM CG45073
3R	25948650	3R_25948650_SNP [dm3] 3R_30122928_SNP [dm6]	A	G	5.926e^-6	0.924	SYNONYMOUS_CODING CG45072 DOWNSTREAM CG45073
3R	25948654	3R_25948654_SNP [dm3] 3R_30122932_SNP [dm6]	G	A	5.926e^-6	0.924	SYNONYMOUS_CODING CG45072 DOWNSTREAM CG45073
3R	25948657	3R_25948657_SNP [dm3] 3R_30122935_SNP [dm6]	T	G	5.926e^-6	0.924	SYNONYMOUS_CODING CG45072 DOWNSTREAM CG45073
2R	17076205	2R_17076205_SNP [dm3] 2R_21188700_SNP [dm6]	C	T	1.329e^-5	0.924	SYNONYMOUS_CODING tud
2R	18344690	2R_18344690_DEL [dm3] 2R_22457185_DEL [dm6]	CTT	C	1.584e^-5	0.924	INTRON CG10384
2L	1671772	2L_1671772_SNP [dm3] 2L_1671772_SNP [dm6]	G	A	1.635e^-5	0.924	INTRON chinmo
2L	4495897	2L_4495897_SNP [dm3] 2L_4495897_SNP [dm6]	T	C	1.635e^-5	0.924	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4495933	2L_4495933_SNP [dm3] 2L_4495933_SNP [dm6]	A	G	1.635e^-5	0.924	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4495948	2L_4495948_SNP [dm3] 2L_4495948_SNP [dm6]	A	T	1.635e^-5	0.924	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3903088	2R_3903088_SNP [dm3] 2R_8015583_SNP [dm6]	G	C	1.635e^-5	0.924	DOWNSTREAM mir-4981 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21736718	2L_21736718_SNP [dm3] 2L_21736718_SNP [dm6]	C	G	2.040e^-5	0.924	INTERGENIC	transposable element FlyBase
3L	3785248	3L_3785248_SNP [dm3] 3L_3785248_SNP [dm6]	T	C	2.266e^-5	0.924	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Ubx
3L	3785266	3L_3785266_SNP [dm3] 3L_3785266_SNP [dm6]	G	T	2.266e^-5	0.924	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens mE1_TFBS_Ubx
2R	16931982	2R_16931982_SNP [dm3] 2R_21044477_SNP [dm6]	C	A	2.299e^-5	0.924	INTERGENIC
3R	25948696	3R_25948696_SNP [dm3] 3R_30122974_SNP [dm6]	C	T	2.368e^-5	0.924	SYNONYMOUS_CODING CG45072 DOWNSTREAM CG45073
3R	18894023	3R_18894023_SNP [dm3] 3R_23068301_SNP [dm6]	A	C	2.619e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10616385	3L_10616385_SNP [dm3] 3L_10623285_SNP [dm6]	T	C	3.232e^-5	0.924	SYNONYMOUS_CODING CG42521
3R	18091786	3R_18091786_SNP [dm3] 3R_22266064_SNP [dm6]	C	T	3.306e^-5	0.924	INTRON SKIP
3L	3654797	3L_3654797_SNP [dm3] 3L_3654797_SNP [dm6]	C	T	4.003e^-5	0.924	UPSTREAM CG10862 INTERGENIC
3R	26802966	3R_26802966_SNP [dm3] 3R_30977244_SNP [dm6]	A	C	4.418e^-5	0.924	INTRON 5-HT7
3R	26803004	3R_26803004_SNP [dm3] 3R_30977282_SNP [dm6]	T	A	4.418e^-5	0.924	INTRON 5-HT7
X	2528819	X_2528819_SNP [dm3] X_2634786_SNP [dm6]	G	A	4.984e^-5	0.924	INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10129860	2L_10129860_SNP [dm3] 2L_10129860_SNP [dm6]	A	G	5.393e^-5	0.924	INTRON CG44153
2L	10129868	2L_10129868_SNP [dm3] 2L_10129868_SNP [dm6]	T	A	5.393e^-5	0.924	INTRON CG44153
2L	10129873	2L_10129873_SNP [dm3] 2L_10129873_SNP [dm6]	T	C	5.393e^-5	0.924	INTRON CG44153
2L	10129876	2L_10129876_SNP [dm3] 2L_10129876_SNP [dm6]	C	T	5.393e^-5	0.924	INTRON CG44153
2R	10835459	2R_10835459_SNP [dm3] 2R_14947954_SNP [dm6]	A	G	5.393e^-5	0.924	SYNONYMOUS_CODING aPKC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14548532	2R_14548532_SNP [dm3] 2R_18661027_SNP [dm6]	T	G	5.393e^-5	0.924	UPSTREAM Gint3 & 1 other INTRON Gint3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14589832	2R_14589832_SNP [dm3] 2R_18702327_SNP [dm6]	C	T	5.393e^-5	0.924	DOWNSTREAM Sik3 INTRON Sik3
2R	14589846	2R_14589846_SNP [dm3] 2R_18702341_SNP [dm6]	T	G	5.393e^-5	0.924	DOWNSTREAM Sik3 INTRON Sik3
2R	19274070	2R_19274070_SNP [dm3] 2R_23386547_SNP [dm6]	A	G	5.393e^-5	0.924	UTR_5_PRIME eIF2B-delta UPSTREAM eIF2B-delta & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	19274286	2R_19274286_SNP [dm3] 2R_23386763_SNP [dm6]	T	A	5.393e^-5	0.924	UPSTREAM eIF2B-delta & 1 other INTRON eIF2B-delta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8839726	2R_8839726_SNP [dm3] 2R_12952221_SNP [dm6]	T	G	5.393e^-5	0.924	UTR_5_PRIME CG44251 & 1 other UPSTREAM CG13321
2R	17376406	2R_17376406_SNP [dm3] 2R_21488901_SNP [dm6]	A	C	5.535e^-5	0.924	INTRON Fkbp14
3L	9069091	3L_9069091_SNP [dm3] 3L_9075991_SNP [dm6]	C	A	5.827e^-5	0.924	INTRON Tequila	TF binding site mE1_TFBS_cad
2R	11916989	2R_11916989_SNP [dm3] 2R_16029484_SNP [dm6]	C	T	5.992e^-5	0.924	SPLICE_SITE_REGION CG8401 INTRON CG8401
3L	22412688	3L_22412688_DEL [dm3] 3L_22419588_DEL [dm6]	CCCCAAAGTCGAATCA...	C	5.992e^-5	0.924	INTERGENIC
3L	22412704	3L_22412704_INS [dm3] 3L_22419604_INS [dm6]	T	TTA	5.992e^-5	0.924	INTERGENIC
3L	6197240	3L_6197240_SNP [dm3] 3L_6204140_SNP [dm6]	A	G	5.992e^-5	0.924	UTR_3_PRIME LanA DOWNSTREAM CG8219	TF binding site mE1_TFBS_cad
3R	22469164	3R_22469164_INS [dm3] 3R_26643442_INS [dm6]	A	ACA	5.998e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	12762616	2R_12762616_SNP [dm3] 2R_16875111_SNP [dm6]	G	A	6.498e^-5	0.924	UTR_3_PRIME CG8910 DOWNSTREAM CG6435
3R	17518267	3R_17518267_SNP [dm3] 3R_21692545_SNP [dm6]	A	C	6.709e^-5	0.924	INTRON CG31176
3R	17518723	3R_17518723_SNP [dm3] 3R_21693001_SNP [dm6]	T	C	6.709e^-5	0.924	INTRON CG31176
3R	17518770	3R_17518770_SNP [dm3] 3R_21693048_SNP [dm6]	T	C	6.709e^-5	0.924	INTRON CG31176
3R	26236311	3R_26236311_SNP [dm3] 3R_30410589_SNP [dm6]	C	T	6.737e^-5	0.924	INTERGENIC
3R	26236312	3R_26236312_SNP [dm3] 3R_30410590_SNP [dm6]	A	C	6.737e^-5	0.924	INTERGENIC
3R	26238649	3R_26238649_SNP [dm3] 3R_30412927_SNP [dm6]	T	C	6.737e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	792576	X_792576_SNP [dm3] X_898543_SNP [dm6]	A	G	6.782e^-5	0.924	INTRON CG43867
X	851090	X_851090_SNP [dm3] X_957057_SNP [dm6]	G	A	6.782e^-5	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18201959	2R_18201959_SNP [dm3] 2R_22314454_SNP [dm6]	T	G	6.913e^-5	0.924	INTRON CR44758
2R	17685567	2R_17685567_SNP [dm3] 2R_21798062_SNP [dm6]	T	A	7.126e^-5	0.924	UTR_3_PRIME CG18735	TF binding site mE1_TFBS_chinmo
2R	17685580	2R_17685580_SNP [dm3] 2R_21798075_SNP [dm6]	A	T	7.126e^-5	0.924	SYNONYMOUS_CODING CG18735	TF binding site mE1_TFBS_chinmo
2R	19814078	2R_19814078_SNP [dm3] 2R_23926555_SNP [dm6]	C	T	7.126e^-5	0.924	UTR_3_PRIME Ca-P60A DOWNSTREAM Ca-P60A INTRON CG2812	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4496151	2L_4496151_SNP [dm3] 2L_4496151_SNP [dm6]	C	T	7.138e^-5	0.924	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11119645	3L_11119645_INS [dm3] 3L_11126545_INS [dm6]	C	CCTGCC	7.138e^-5	0.924	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	11119952	3L_11119952_SNP [dm3] 3L_11126852_SNP [dm6]	G	C	7.138e^-5	0.924	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	20822964	3R_20822964_SNP [dm3] 3R_24997242_SNP [dm6]	A	G	7.138e^-5	0.924	INTRON tnc	TF binding site mE1_TFBS_chinmo
X	9201625	X_9201625_INS [dm3] X_9307592_INS [dm6]	A	ATGA	7.220e^-5	0.924	INTERGENIC
2R	7287157	2R_7287157_SNP [dm3] 2R_11399652_SNP [dm6]	G	C	7.314e^-5	0.924	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7287174	2R_7287174_INS [dm3] 2R_11399669_INS [dm6]	T	TG	7.314e^-5	0.924	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2357337	3R_2357337_INS [dm3] 3R_6531615_INS [dm6]	C	CGTC	7.518e^-5	0.924	UTR_3_PRIME dpr11
2R	17718701	2R_17718701_SNP [dm3] 2R_21831196_SNP [dm6]	T	A	8.023e^-5	0.924	INTRON CG13492
3R	23978622	3R_23978622_SNP [dm3] 3R_28152900_SNP [dm6]	T	C	8.023e^-5	0.924	INTRON CG34354
X	19361793	X_19361793_SNP [dm3] X_19467760_SNP [dm6]	G	T	8.023e^-5	0.924	INTRON kek5
X	19361818	X_19361818_SNP [dm3] X_19467785_SNP [dm6]	A	G	8.023e^-5	0.924	INTRON kek5
X	19361824	X_19361824_SNP [dm3] X_19467791_SNP [dm6]	C	T	8.023e^-5	0.924	INTRON kek5
3R	17518204	3R_17518204_SNP [dm3] 3R_21692482_SNP [dm6]	T	C	8.117e^-5	0.924	INTRON CG31176
3R	23820287	3R_23820287_SNP [dm3] 3R_27994565_SNP [dm6]	T	A	8.584e^-5	0.924	INTERGENIC
2L	8755034	2L_8755034_SNP [dm3] 2L_8755034_SNP [dm6]	C	G	8.585e^-5	0.924	INTERGENIC
X	12243357	X_12243357_SNP [dm3] X_12349324_SNP [dm6]	T	A	9.121e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3845078	3L_3845078_SNP [dm3] 3L_3845078_SNP [dm6]	C	A	9.283e^-5	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9348162	2R_9348162_SNP [dm3] 2R_13460657_SNP [dm6]	A	T	9.297e^-5	0.924	INTRON arr	TF binding site mE1_TFBS_chinmo
3L	9288639	3L_9288639_SNP [dm3] 3L_9295539_SNP [dm6]	T	C	9.536e^-5	0.924	INTERGENIC
2L	14044070	2L_14044070_SNP [dm3] 2L_14044070_SNP [dm6]	C	A	9.662e^-5	0.924	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20141297	2L_20141297_SNP [dm3] 2L_20141297_SNP [dm6]	C	G	1.008e^-4	0.924	INTERGENIC
2L	20141313	2L_20141313_SNP [dm3] 2L_20141313_SNP [dm6]	A	T	1.008e^-4	0.924	INTERGENIC
2L	20141508	2L_20141508_SNP [dm3] 2L_20141508_SNP [dm6]	C	A	1.008e^-4	0.924	INTERGENIC
2L	20142242	2L_20142242_SNP [dm3] 2L_20142242_SNP [dm6]	A	T	1.008e^-4	0.924	INTERGENIC
3R	26803104	3R_26803104_SNP [dm3] 3R_30977382_SNP [dm6]	A	T	1.037e^-4	0.924	INTRON 5-HT7
3L	2389151	3L_2389151_SNP [dm3] 3L_2389151_SNP [dm6]	G	T	1.045e^-4	0.924	UPSTREAM CG42787 DOWNSTREAM CG32299 & 1 other INTRON CG45186
2R	14344113	2R_14344113_SNP [dm3] 2R_18456608_SNP [dm6]	T	A	1.110e^-4	0.924	UTR_3_PRIME CG30116 DOWNSTREAM CG30116
2R	19414266	2R_19414266_SNP [dm3] 2R_23526743_SNP [dm6]	C	T	1.110e^-4	0.924	INTRON mi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12295018	3L_12295018_SNP [dm3] 3L_12301918_SNP [dm6]	G	C	1.110e^-4	0.924	DOWNSTREAM CR44551 EXON CR44550
3L	12295019	3L_12295019_SNP [dm3] 3L_12301919_SNP [dm6]	T	G	1.110e^-4	0.924	DOWNSTREAM CR44551 EXON CR44550
3L	12295085	3L_12295085_SNP [dm3] 3L_12301985_SNP [dm6]	A	G	1.110e^-4	0.924	DOWNSTREAM CR44551 & 1 other INTERGENIC
3L	12295091	3L_12295091_SNP [dm3] 3L_12301991_SNP [dm6]	A	G	1.110e^-4	0.924	DOWNSTREAM CR44551 & 1 other INTERGENIC
3L	12295123	3L_12295123_SNP [dm3] 3L_12302023_SNP [dm6]	G	A	1.110e^-4	0.924	DOWNSTREAM CR44551 & 1 other INTERGENIC
2L	1430755	2L_1430755_SNP [dm3] 2L_1430755_SNP [dm6]	C	T	1.154e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1473790	2L_1473790_SNP [dm3] 2L_1473790_SNP [dm6]	C	A	1.154e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19213603	2L_19213603_SNP [dm3] 2L_19213603_SNP [dm6]	A	G	1.154e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	22138597	2L_22138597_SNP [dm3] 2L_22138597_SNP [dm6]	A	G	1.154e^-4	0.924	INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3017690	2L_3017690_SNP [dm3] 2L_3017690_SNP [dm6]	C	A	1.154e^-4	0.924	SYNONYMOUS_CODING CG17224 UPSTREAM CG17264
2L	4726622	2L_4726622_SNP [dm3] 2L_4726622_SNP [dm6]	C	A	1.154e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	2484053	2R_2484053_DEL [dm3] 2R_6596548_DEL [dm6]	GGAAGCG	G	1.154e^-4	0.924	INTRON jing	TF binding site BDTNP1_TFBS_dl
3R	21594364	3R_21594364_SNP [dm3] 3R_25768642_SNP [dm6]	G	T	1.218e^-4	0.924	INTERGENIC
3R	21594368	3R_21594368_SNP [dm3] 3R_25768646_SNP [dm6]	T	G	1.218e^-4	0.924	INTERGENIC
3R	21594385	3R_21594385_SNP [dm3] 3R_25768663_SNP [dm6]	T	G	1.218e^-4	0.924	INTERGENIC
3R	21594399	3R_21594399_SNP [dm3] 3R_25768677_SNP [dm6]	T	A	1.218e^-4	0.924	INTERGENIC
2R	11878353	2R_11878353_INS [dm3] 2R_15990848_INS [dm6]	C	CGACTGGCCATC...	1.242e^-4	0.924	DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4565984	X_4565984_SNP [dm3] X_4671951_SNP [dm6]	C	T	1.343e^-4	0.924	INTRON rap
3R	16393478	3R_16393478_DEL [dm3] 3R_20567756_DEL [dm6]	TT	T	1.350e^-4	0.924	INTRON CG5191
3L	14054891	3L_14054891_SNP [dm3] 3L_14061791_SNP [dm6]	A	C	1.355e^-4	0.924	INTRON CG32138
2R	18062828	2R_18062828_SNP [dm3] 2R_22175323_SNP [dm6]	C	T	1.586e^-4	0.924	SPLICE_SITE_REGION CR45151 UPSTREAM CG3045 INTRON CG6758 EXON CR45151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	18547556	X_18547556_SNP [dm3] X_18653523_SNP [dm6]	C	A	1.605e^-4	0.924	UTR_3_PRIME CG6659 UPSTREAM Ing3	TF binding site BDTNP1_TFBS_dl
X	6012590	X_6012590_SNP [dm3] X_6118557_SNP [dm6]	C	T	1.608e^-4	0.924	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
2R	18698380	2R_18698380_SNP [dm3] 2R_22810875_SNP [dm6]	T	G	1.615e^-4	0.924	INTRON stl
2R	18698493	2R_18698493_SNP [dm3] 2R_22810988_SNP [dm6]	C	A	1.615e^-4	0.924	INTRON stl
2R	7287181	2R_7287181_SNP [dm3] 2R_11399676_SNP [dm6]	A	G	1.615e^-4	0.924	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7287189	2R_7287189_SNP [dm3] 2R_11399684_SNP [dm6]	A	G	1.615e^-4	0.924	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7287207	2R_7287207_INS [dm3] 2R_11399702_INS [dm6]	A	ACATGAAAATCG...	1.615e^-4	0.924	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18678296	2R_18678296_SNP [dm3] 2R_22790791_SNP [dm6]	T	A	1.629e^-4	0.924	INTRON CG42260
2R	7253345	2R_7253345_INS [dm3] 2R_11365840_INS [dm6]	C	CTGC	1.629e^-4	0.924	UPSTREAM CG13204 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7253376	2R_7253376_SNP [dm3] 2R_11365871_SNP [dm6]	G	T	1.629e^-4	0.924	UPSTREAM CG13204 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7254315	2R_7254315_SNP [dm3] 2R_11366810_SNP [dm6]	C	T	1.629e^-4	0.924	UTR_5_PRIME CG13204	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7254864	2R_7254864_SNP [dm3] 2R_11367359_SNP [dm6]	T	A	1.629e^-4	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7254936	2R_7254936_SNP [dm3] 2R_11367431_SNP [dm6]	T	A	1.629e^-4	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7255513	2R_7255513_SNP [dm3] 2R_11368008_SNP [dm6]	T	G	1.629e^-4	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7255583	2R_7255583_SNP [dm3] 2R_11368078_SNP [dm6]	A	T	1.629e^-4	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7255586	2R_7255586_DEL [dm3] 2R_11368081_DEL [dm6]	ACGATTAAATTTCTTTTGAT...	A	1.629e^-4	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7255619	2R_7255619_SNP [dm3] 2R_11368114_SNP [dm6]	T	C	1.629e^-4	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7255633	2R_7255633_SNP [dm3] 2R_11368128_SNP [dm6]	A	C	1.629e^-4	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7255811	2R_7255811_SNP [dm3] 2R_11368306_SNP [dm6]	A	G	1.629e^-4	0.924	START_GAINED CG13204 UTR_5_PRIME CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl
2R	7881958	2R_7881958_SNP [dm3] 2R_11994453_SNP [dm6]	T	C	1.629e^-4	0.924	UPSTREAM CR45318 DOWNSTREAM CR45319 EXON CR45319
3L	2992902	3L_2992902_SNP [dm3] 3L_2992902_SNP [dm6]	T	C	1.629e^-4	0.924	INTERGENIC
3L	4968270	3L_4968270_SNP [dm3] 3L_4968270_SNP [dm6]	A	T	1.629e^-4	0.924	INTRON Con
3L	9078969	3L_9078969_SNP [dm3] 3L_9085869_SNP [dm6]	T	A	1.629e^-4	0.924	INTRON Tequila
X	21850330	X_21850330_SNP [dm3] X_22448494_SNP [dm6]	C	T	1.629e^-4	0.924	DOWNSTREAM CG14621 INTRON CG14615
2R	11495628	2R_11495628_SNP [dm3] 2R_15608123_SNP [dm6]	C	T	1.654e^-4	0.924	INTERGENIC
2R	6935989	2R_6935989_SNP [dm3] 2R_11048484_SNP [dm6]	C	A	1.715e^-4	0.924	INTRON luna
2L	1674459	2L_1674459_SNP [dm3] 2L_1674459_SNP [dm6]	T	G	1.766e^-4	0.924	INTRON chinmo
2L	20141323	2L_20141323_SNP [dm3] 2L_20141323_SNP [dm6]	T	A	1.784e^-4	0.924	INTERGENIC
3L	2738477	3L_2738477_SNP [dm3] 3L_2738477_SNP [dm6]	G	A	1.790e^-4	0.924	INTRON Mrtf
3L	3824280	3L_3824280_SNP [dm3] 3L_3824280_SNP [dm6]	A	T	1.803e^-4	0.924	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12995348	3R_12995348_SNP [dm3] 3R_17169626_SNP [dm6]	T	A	1.806e^-4	0.924	INTRON Mur89F
2R	20491098	2R_20491098_DEL [dm3] 2R_24603575_DEL [dm6]	TCAGTGTGT	T	1.829e^-4	0.924	UTR_5_PRIME CG3570 DOWNSTREAM CG3565	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	20491577	2R_20491577_SNP [dm3] 2R_24604054_SNP [dm6]	C	T	1.829e^-4	0.924	SYNONYMOUS_CODING CG3570 DOWNSTREAM CG3565 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20494095	2R_20494095_SNP [dm3] 2R_24606572_SNP [dm6]	T	C	1.829e^-4	0.924	SYNONYMOUS_CODING CG4707 UPSTREAM CG42360	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20494401	2R_20494401_SNP [dm3] 2R_24606878_SNP [dm6]	C	T	1.829e^-4	0.924	SYNONYMOUS_CODING CG4707 UPSTREAM CG42360 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	20495035	2R_20495035_SNP [dm3] 2R_24607512_SNP [dm6]	G	C	1.829e^-4	0.924	NON_SYNONYMOUS_CODING CG42360 UPSTREAM CG42361 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20497486	2R_20497486_SNP [dm3] 2R_24609963_SNP [dm6]	C	T	1.829e^-4	0.924	SPLICE_SITE_REGION CG42360 DOWNSTREAM CG4741 INTRON CG42360	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	733259	X_733259_DEL [dm3] X_839226_DEL [dm6]	TGTA	T	1.853e^-4	0.924	INTRON CG43867
3L	11452517	3L_11452517_SNP [dm3] 3L_11459417_SNP [dm6]	G	C	1.870e^-4	0.924	SYNONYMOUS_CODING CG7551 UPSTREAM CG12289	TF binding site mE1_TFBS_inv
3L	11452571	3L_11452571_SNP [dm3] 3L_11459471_SNP [dm6]	G	A	1.870e^-4	0.924	SYNONYMOUS_CODING CG7551	TF binding site mE1_TFBS_inv
3L	5519983	3L_5519983_SNP [dm3] 3L_5526883_SNP [dm6]	G	A	1.870e^-4	0.924	INTRON Lkr
3L	5520087	3L_5520087_SNP [dm3] 3L_5526987_SNP [dm6]	T	C	1.870e^-4	0.924	INTRON Lkr
3L	5520088	3L_5520088_SNP [dm3] 3L_5526988_SNP [dm6]	C	G	1.870e^-4	0.924	INTRON Lkr
2R	11312388	2R_11312388_SNP [dm3] 2R_15424883_SNP [dm6]	T	C	1.907e^-4	0.924	UTR_5_PRIME CG43729 UPSTREAM CG30472 & 1 other INTRON CG43729	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14770438	2R_14770438_SNP [dm3] 2R_18882933_SNP [dm6]	A	T	1.907e^-4	0.924	INTRON sano
3L	19177843	3L_19177843_SNP [dm3] 3L_19184743_SNP [dm6]	T	A	1.966e^-4	0.924	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25729311	3R_25729311_SNP [dm3] 3R_29903589_SNP [dm6]	T	A	1.975e^-4	0.924	DOWNSTREAM CG31038 INTRON CG15517
3L	5822297	3L_5822297_SNP [dm3] 3L_5829197_SNP [dm6]	T	G	1.978e^-4	0.924	INTRON vn
2L	3565786	2L_3565786_SNP [dm3] 2L_3565786_SNP [dm6]	T	C	1.983e^-4	0.924	INTERGENIC
2R	13071121	2R_13071121_SNP [dm3] 2R_17183616_SNP [dm6]	T	C	2.008e^-4	0.924	INTERGENIC
X	2528659	X_2528659_SNP [dm3] X_2634626_SNP [dm6]	C	T	2.008e^-4	0.924	DOWNSTREAM PI4KIIIalpha INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18833500	2L_18833500_SNP [dm3] 2L_18833500_SNP [dm6]	C	G	2.050e^-4	0.924	UTR_3_PRIME ScpX DOWNSTREAM CG10600
3R	14785642	3R_14785642_SNP [dm3] 3R_18959920_SNP [dm6]	T	A	2.146e^-4	0.924	UTR_5_PRIME CG42613 UTR_3_PRIME CG43732 INTRON CG42613
2R	4014385	2R_4014385_INS [dm3] 2R_8126880_INS [dm6]	T	TT	2.149e^-4	0.924	UTR_5_PRIME coil UPSTREAM Socs44A INTRON coil	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11452568	3L_11452568_SNP [dm3] 3L_11459468_SNP [dm6]	C	T	2.161e^-4	0.924	SYNONYMOUS_CODING CG7551 UPSTREAM CG12289	TF binding site mE1_TFBS_inv
3L	11452627	3L_11452627_SNP [dm3] 3L_11459527_SNP [dm6]	A	G	2.161e^-4	0.924	SYNONYMOUS_STOP CG7551	TF binding site mE1_TFBS_inv
X	8084367	X_8084367_SNP [dm3] X_8190334_SNP [dm6]	T	G	2.161e^-4	0.924	INTRON sdt
2R	12265088	2R_12265088_SNP [dm3] 2R_16377583_SNP [dm6]	A	G	2.167e^-4	0.924	INTERGENIC
2R	18202240	2R_18202240_SNP [dm3] 2R_22314735_SNP [dm6]	T	G	2.167e^-4	0.924	INTRON CR44758
2R	18202259	2R_18202259_SNP [dm3] 2R_22314754_SNP [dm6]	T	G	2.167e^-4	0.924	INTRON CR44758
2R	18458849	2R_18458849_SNP [dm3] 2R_22571344_SNP [dm6]	T	A	2.167e^-4	0.924	INTRON dnr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	5414532	X_5414532_DEL [dm3] X_5520499_DEL [dm6]	GCCTAGTTCCC...	G	2.168e^-4	0.924	INTERGENIC
3R	10972120	3R_10972120_SNP [dm3] 3R_15146398_SNP [dm6]	C	T	2.175e^-4	0.924	UPSTREAM GlyS INTRON GlyS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	16457465	2R_16457465_SNP [dm3] 2R_20569960_SNP [dm6]	G	C	2.228e^-4	0.924	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16457466	2R_16457466_SNP [dm3] 2R_20569961_SNP [dm6]	T	A	2.228e^-4	0.924	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	19143529	3L_19143529_SNP [dm3] 3L_19150429_SNP [dm6]	A	T	2.259e^-4	0.924	INTRON fz2
3L	19143569	3L_19143569_SNP [dm3] 3L_19150469_SNP [dm6]	C	G	2.259e^-4	0.924	INTRON fz2
X	14962345	X_14962345_INS [dm3] X_15068312_INS [dm6]	A	AGAAGGA	2.261e^-4	0.924	DOWNSTREAM Lsd-2	TF binding site mE1_TFBS_HSA
2L	21726287	2L_21726287_INS [dm3] 2L_21726287_INS [dm6]	T	TT	2.267e^-4	0.924	INTRON CG31619	transposable element FlyBase
2L	9776001	2L_9776001_DEL [dm3] 2L_9776001_DEL [dm6]	CCTATAC	C	2.267e^-4	0.924	UPSTREAM ppk11 INTERGENIC
X	19936113	X_19936113_DEL [dm3] X_20042080_DEL [dm6]	TT	T	2.274e^-4	0.924	INTRON Dop2R
3R	10350920	3R_10350920_SNP [dm3] 3R_14525198_SNP [dm6]	C	T	2.293e^-4	0.924	INTRON Pde6
3R	18947445	3R_18947445_SNP [dm3] 3R_23121723_SNP [dm6]	G	A	2.314e^-4	0.924	INTRON CenB1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	21569571	3R_21569571_SNP [dm3] 3R_25743849_SNP [dm6]	A	T	2.314e^-4	0.924	INTRON LpR1
3R	21593238	3R_21593238_SNP [dm3] 3R_25767516_SNP [dm6]	C	T	2.314e^-4	0.924	INTERGENIC
3R	21789724	3R_21789724_SNP [dm3] 3R_25964002_SNP [dm6]	C	G	2.314e^-4	0.924	NON_SYNONYMOUS_CODING boss	TF binding site mE1_TFBS_inv
3R	26238635	3R_26238635_SNP [dm3] 3R_30412913_SNP [dm6]	A	C	2.317e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	770070	X_770070_SNP [dm3] X_876037_SNP [dm6]	T	C	2.319e^-4	0.924	SYNONYMOUS_CODING CG11664 INTRON CG43867	TF binding site mE1_TFBS_chinmo
2R	7287154	2R_7287154_INS [dm3] 2R_11399649_INS [dm6]	C	CAGGCTTAATCCTAG...	2.376e^-4	0.924	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1671864	2L_1671864_SNP [dm3] 2L_1671864_SNP [dm6]	C	T	2.387e^-4	0.924	INTRON chinmo
2R	16805224	2R_16805224_SNP [dm3] 2R_20917719_SNP [dm6]	T	C	2.387e^-4	0.924	INTRON Rx
3L	11119650	3L_11119650_SNP [dm3] 3L_11126550_SNP [dm6]	G	A	2.387e^-4	0.924	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	10398531	X_10398531_SNP [dm3] X_10504498_SNP [dm6]	A	C	2.387e^-4	0.924	INTRON spri
2L	9776214	2L_9776214_SNP [dm3] 2L_9776214_SNP [dm6]	G	C	2.387e^-4	0.924	INTERGENIC
3R	19464205	3R_19464205_SNP [dm3] 3R_23638483_SNP [dm6]	T	C	2.387e^-4	0.924	INTRON CG31145
2L	10119912	2L_10119912_SNP [dm3] 2L_10119912_SNP [dm6]	T	A	2.414e^-4	0.924	INTRON CG44153 & 1 other
2L	10129833	2L_10129833_SNP [dm3] 2L_10129833_SNP [dm6]	C	G	2.414e^-4	0.924	INTRON CG44153
2L	10363266	2L_10363266_SNP [dm3] 2L_10363266_SNP [dm6]	C	A	2.414e^-4	0.924	NON_SYNONYMOUS_CODING pim UPSTREAM Cand1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7844984	2L_7844984_SNP [dm3] 2L_7844984_SNP [dm6]	A	G	2.414e^-4	0.924	UTR_3_PRIME CG14535
2L	7847610	2L_7847610_SNP [dm3] 2L_7847610_SNP [dm6]	G	A	2.414e^-4	0.924	SYNONYMOUS_CODING CG14535
2L	7847738	2L_7847738_SNP [dm3] 2L_7847738_SNP [dm6]	G	C	2.414e^-4	0.924	INTRON CG14535	TF binding site mE1_TFBS_cad
2L	7847768	2L_7847768_SNP [dm3] 2L_7847768_SNP [dm6]	C	T	2.414e^-4	0.924	INTRON CG14535	TF binding site mE1_TFBS_cad
2L	7847784	2L_7847784_SNP [dm3] 2L_7847784_SNP [dm6]	A	G	2.414e^-4	0.924	INTRON CG14535	TF binding site mE1_TFBS_cad
2L	7851380	2L_7851380_SNP [dm3] 2L_7851380_SNP [dm6]	G	C	2.414e^-4	0.924	INTRON CG14535
2L	8065637	2L_8065637_SNP [dm3] 2L_8065637_SNP [dm6]	G	A	2.414e^-4	0.924	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	856868	2L_856868_SNP [dm3] 2L_856868_SNP [dm6]	C	A	2.414e^-4	0.924	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad
2L	856869	2L_856869_SNP [dm3] 2L_856869_SNP [dm6]	C	G	2.414e^-4	0.924	UPSTREAM CR45345 & 1 other DOWNSTREAM CG13949 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9776087	2L_9776087_SNP [dm3] 2L_9776087_SNP [dm6]	T	A	2.414e^-4	0.924	INTERGENIC
2L	993382	2L_993382_SNP [dm3] 2L_993382_SNP [dm6]	G	A	2.414e^-4	0.924	INTERGENIC
2R	10806704	2R_10806704_SNP [dm3] 2R_14919199_SNP [dm6]	G	A	2.414e^-4	0.924	INTRON CG10249	TF binding site mE1_TFBS_cnc
2R	10811325	2R_10811325_SNP [dm3] 2R_14923820_SNP [dm6]	G	A	2.414e^-4	0.924	INTRON CG10249	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10811332	2R_10811332_SNP [dm3] 2R_14923827_SNP [dm6]	G	A	2.414e^-4	0.924	INTRON CG10249	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14589874	2R_14589874_SNP [dm3] 2R_18702369_SNP [dm6]	T	G	2.414e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3
2R	14589876	2R_14589876_SNP [dm3] 2R_18702371_SNP [dm6]	A	C	2.414e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3
2R	14589878	2R_14589878_SNP [dm3] 2R_18702373_SNP [dm6]	A	G	2.414e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3
2R	14589884	2R_14589884_SNP [dm3] 2R_18702379_SNP [dm6]	T	A	2.414e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3
2R	14589885	2R_14589885_INS [dm3] 2R_18702380_INS [dm6]	A	AACA	2.414e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3
2R	14589887	2R_14589887_SNP [dm3] 2R_18702382_SNP [dm6]	G	T	2.414e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3
2R	14589899	2R_14589899_SNP [dm3] 2R_18702394_SNP [dm6]	A	C	2.414e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3
2R	14589912	2R_14589912_SNP [dm3] 2R_18702407_SNP [dm6]	G	A	2.414e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3	TF binding site mE1_TFBS_HSA
2R	14589925	2R_14589925_SNP [dm3] 2R_18702420_SNP [dm6]	A	C	2.414e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3	TF binding site mE1_TFBS_HSA
2R	14589930	2R_14589930_SNP [dm3] 2R_18702425_SNP [dm6]	C	T	2.414e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3	TF binding site mE1_TFBS_HSA
2R	16720923	2R_16720923_SNP [dm3] 2R_20833418_SNP [dm6]	C	G	2.414e^-4	0.924	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16920348	2R_16920348_SNP [dm3] 2R_21032843_SNP [dm6]	T	A	2.414e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	16966784	2R_16966784_SNP [dm3] 2R_21079279_SNP [dm6]	G	C	2.414e^-4	0.924	INTRON Treh
2R	17492755	2R_17492755_SNP [dm3] 2R_21605250_SNP [dm6]	G	A	2.414e^-4	0.924	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC
2R	17718614	2R_17718614_SNP [dm3] 2R_21831109_SNP [dm6]	A	G	2.414e^-4	0.924	INTRON CG13492
2R	17718615	2R_17718615_SNP [dm3] 2R_21831110_SNP [dm6]	G	C	2.414e^-4	0.924	INTRON CG13492
2R	17718638	2R_17718638_SNP [dm3] 2R_21831133_SNP [dm6]	C	T	2.414e^-4	0.924	INTRON CG13492
2R	17718653	2R_17718653_DEL [dm3] 2R_21831148_DEL [dm6]	TTATATTATTCGCTGTTTTA...	T	2.414e^-4	0.924	INTRON CG13492
2R	17718742	2R_17718742_SNP [dm3] 2R_21831237_SNP [dm6]	C	T	2.414e^-4	0.924	INTRON CG13492
2R	18973886	2R_18973886_SNP [dm3] 2R_23086363_SNP [dm6]	T	C	2.414e^-4	0.924	UPSTREAM CG13538 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	19728331	2R_19728331_SNP [dm3] 2R_23840808_SNP [dm6]	C	T	2.414e^-4	0.924	UPSTREAM snoRNA:Psi18S-176 DOWNSTREAM CG5549 & 2 others INTERGENIC
2R	6784235	2R_6784235_SNP [dm3] 2R_10896730_SNP [dm6]	G	A	2.414e^-4	0.924	SYNONYMOUS_CODING CG12942 DOWNSTREAM CG7712	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9181185	2R_9181185_SNP [dm3] 2R_13293680_SNP [dm6]	G	A	2.414e^-4	0.924	INTRON Dh31-R
3L	2653879	3L_2653879_SNP [dm3] 3L_2653879_SNP [dm6]	G	C	2.414e^-4	0.924	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup
3L	2653888	3L_2653888_SNP [dm3] 3L_2653888_SNP [dm6]	C	G	2.414e^-4	0.924	SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup
3L	2654923	3L_2654923_SNP [dm3] 3L_2654923_SNP [dm6]	C	G	2.414e^-4	0.924	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
3L	3059522	3L_3059522_DEL [dm3] 3L_3059522_DEL [dm6]	CA	C	2.414e^-4	0.924	INTRON CG32486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	3867643	3L_3867643_SNP [dm3] 3L_3867643_SNP [dm6]	G	C	2.414e^-4	0.924	INTERGENIC
3R	25871691	3R_25871691_SNP [dm3] 3R_30045969_SNP [dm6]	C	T	2.414e^-4	0.924	UTR_5_PRIME RpL32 UPSTREAM CG7943 INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26071147	3R_26071147_SNP [dm3] 3R_30245425_SNP [dm6]	A	T	2.414e^-4	0.924	INTRON CG9733
3R	26134362	3R_26134362_SNP [dm3] 3R_30308640_SNP [dm6]	G	A	2.414e^-4	0.924	INTRON hdc
3R	26134483	3R_26134483_SNP [dm3] 3R_30308761_SNP [dm6]	A	G	2.414e^-4	0.924	INTRON hdc
3R	26134551	3R_26134551_SNP [dm3] 3R_30308829_SNP [dm6]	C	T	2.414e^-4	0.924	INTRON hdc
X	11950325	X_11950325_SNP [dm3] X_12056292_SNP [dm6]	A	G	2.414e^-4	0.924	SYNONYMOUS_CODING Uch-L5R INTRON CR43960 & 1 other
X	11950328	X_11950328_SNP [dm3] X_12056295_SNP [dm6]	C	T	2.414e^-4	0.924	SYNONYMOUS_CODING Uch-L5R INTRON CR43960 & 1 other
X	19200313	X_19200313_SNP [dm3] X_19306280_SNP [dm6]	T	C	2.414e^-4	0.924	UPSTREAM CG8051 INTRON CG8051
2R	12762636	2R_12762636_SNP [dm3] 2R_16875131_SNP [dm6]	G	A	2.416e^-4	0.924	UTR_3_PRIME CG8910 DOWNSTREAM CG6435
2R	7255399	2R_7255399_SNP [dm3] 2R_11367894_SNP [dm6]	G	A	2.416e^-4	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10972190	3R_10972190_SNP [dm3] 3R_15146468_SNP [dm6]	T	C	2.458e^-4	0.924	UPSTREAM GlyS INTRON GlyS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5103622	2L_5103622_SNP [dm3] 2L_5103622_SNP [dm6]	C	A	2.461e^-4	0.924	INTRON Msp300	TF binding site mE1_TFBS_cad
3R	8153838	3R_8153838_SNP [dm3] 3R_12328116_SNP [dm6]	A	T	2.464e^-4	0.924	DOWNSTREAM CR45584 INTERGENIC
X	610940	X_610940_SNP [dm3] X_716907_SNP [dm6]	A	C	2.464e^-4	0.924	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18336130	2R_18336130_SNP [dm3] 2R_22448625_SNP [dm6]	G	A	2.473e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26802956	3R_26802956_SNP [dm3] 3R_30977234_SNP [dm6]	G	T	2.515e^-4	0.924	INTRON 5-HT7
2R	18636819	2R_18636819_SNP [dm3] 2R_22749314_SNP [dm6]	C	T	2.561e^-4	0.924	INTRON CG42260
3L	15760855	3L_15760855_SNP [dm3] 3L_15767755_SNP [dm6]	T	G	2.561e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18165152	3L_18165152_SNP [dm3] 3L_18172052_SNP [dm6]	T	A	2.561e^-4	0.924	SPLICE_SITE_REGION W INTRON W
3L	18167595	3L_18167595_SNP [dm3] 3L_18174495_SNP [dm6]	G	A	2.561e^-4	0.924	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18167623	3L_18167623_SNP [dm3] 3L_18174523_SNP [dm6]	T	A	2.561e^-4	0.924	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18173256	3L_18173256_SNP [dm3] 3L_18180156_SNP [dm6]	G	A	2.561e^-4	0.924	INTRON W
2R	17595501	2R_17595501_SNP [dm3] 2R_21707996_SNP [dm6]	G	A	2.611e^-4	0.924	UPSTREAM HmgZ DOWNSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3293821	3L_3293821_SNP [dm3] 3L_3293821_SNP [dm6]	C	T	2.611e^-4	0.924	UPSTREAM CG12009 INTRON CG12009
3R	25874648	3R_25874648_SNP [dm3] 3R_30048926_SNP [dm6]	C	T	2.617e^-4	0.924	SYNONYMOUS_CODING CG15528 UPSTREAM CR44046 DOWNSTREAM CG7943	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11502422	2R_11502422_SNP [dm3] 2R_15614917_SNP [dm6]	G	T	2.681e^-4	0.924	UTR_5_PRIME CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11877927	2R_11877927_SNP [dm3] 2R_15990422_SNP [dm6]	G	T	2.681e^-4	0.924	UPSTREAM Strn-Mlck DOWNSTREAM Pex11 INTRON CG8314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11878122	2R_11878122_SNP [dm3] 2R_15990617_SNP [dm6]	G	T	2.681e^-4	0.924	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11879749	2R_11879749_SNP [dm3] 2R_15992244_SNP [dm6]	T	A	2.681e^-4	0.924	NON_SYNONYMOUS_CODING Pex11 UPSTREAM CG8314 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	15079160	2R_15079160_SNP [dm3] 2R_19191655_SNP [dm6]	A	G	2.681e^-4	0.924	INTRON hppy
2R	17771978	2R_17771978_DEL [dm3] 2R_21884473_DEL [dm6]	CC	C	2.681e^-4	0.924	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19700957	2R_19700957_SNP [dm3] 2R_23813434_SNP [dm6]	T	C	2.681e^-4	0.924	SYNONYMOUS_CODING CG4797 EXON CR44807	TF binding site mE1_TFBS_chinmo
2R	19711350	2R_19711350_SNP [dm3] 2R_23823827_SNP [dm6]	A	G	2.681e^-4	0.924	NON_SYNONYMOUS_CODING CG4763 INTRON CG5549	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19711357	2R_19711357_SNP [dm3] 2R_23823834_SNP [dm6]	T	G	2.681e^-4	0.924	SYNONYMOUS_CODING CG4763 INTRON CG5549	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19711369	2R_19711369_SNP [dm3] 2R_23823846_SNP [dm6]	G	A	2.681e^-4	0.924	SYNONYMOUS_CODING CG4763 INTRON CG5549	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	728767	3L_728767_SNP [dm3] 3L_728767_SNP [dm6]	C	T	2.681e^-4	0.924	INTERGENIC
3R	13554196	3R_13554196_SNP [dm3] 3R_17728474_SNP [dm6]	G	C	2.681e^-4	0.924	NON_SYNONYMOUS_CODING Lgr1
X	13845980	X_13845980_SNP [dm3] X_13951947_SNP [dm6]	A	G	2.681e^-4	0.924	INTRON mamo
X	769848	X_769848_SNP [dm3] X_875815_SNP [dm6]	G	A	2.681e^-4	0.924	SYNONYMOUS_CODING CG11664 INTRON CG43867	TF binding site mE1_TFBS_chinmo
X	770259	X_770259_SNP [dm3] X_876226_SNP [dm6]	G	A	2.681e^-4	0.924	SYNONYMOUS_CODING CG11664 INTRON CG43867
X	770706	X_770706_SNP [dm3] X_876673_SNP [dm6]	T	C	2.681e^-4	0.924	DOWNSTREAM CG11664 INTRON CG43867
X	770974	X_770974_SNP [dm3] X_876941_SNP [dm6]	T	A	2.681e^-4	0.924	DOWNSTREAM CG11664 INTRON CG43867
X	771165	X_771165_SNP [dm3] X_877132_SNP [dm6]	C	T	2.681e^-4	0.924	DOWNSTREAM CG11664 INTRON CG43867
X	772577	X_772577_SNP [dm3] X_878544_SNP [dm6]	C	T	2.681e^-4	0.924	INTRON CG43867
X	772777	X_772777_SNP [dm3] X_878744_SNP [dm6]	C	T	2.681e^-4	0.924	INTRON CG43867
X	773143	X_773143_SNP [dm3] X_879110_SNP [dm6]	C	A	2.681e^-4	0.924	INTRON CG43867
X	774222	X_774222_DEL [dm3] X_880189_DEL [dm6]	GCAG	G	2.681e^-4	0.924	INTRON CG43867	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	778400	X_778400_SNP [dm3] X_884367_SNP [dm6]	G	A	2.681e^-4	0.924	START_GAINED CG43867 UTR_5_PRIME CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	778744	X_778744_SNP [dm3] X_884711_SNP [dm6]	C	T	2.681e^-4	0.924	UPSTREAM CG43867 INTRON CG43867	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8272559	X_8272559_SNP [dm3] X_8378526_SNP [dm6]	T	A	2.681e^-4	0.924	INTERGENIC
X	8272562	X_8272562_INS [dm3] X_8378529_INS [dm6]	C	CT	2.681e^-4	0.924	INTERGENIC
X	8272600	X_8272600_SNP [dm3] X_8378567_SNP [dm6]	T	C	2.681e^-4	0.924	INTERGENIC
3R	10439899	3R_10439899_SNP [dm3] 3R_14614177_SNP [dm6]	G	C	2.739e^-4	0.924	INTRON CG14853
3L	9069096	3L_9069096_SNP [dm3] 3L_9075996_SNP [dm6]	C	T	2.748e^-4	0.924	INTRON Tequila	TF binding site mE1_TFBS_cad
2R	7458147	2R_7458147_SNP [dm3] 2R_11570642_SNP [dm6]	A	T	2.755e^-4	0.924	INTERGENIC
X	769401	X_769401_SNP [dm3] X_875368_SNP [dm6]	C	T	2.755e^-4	0.924	UPSTREAM CG11664 INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5680403	X_5680403_SNP [dm3] X_5786370_SNP [dm6]	C	A	2.786e^-4	0.924	INTRON CG42699
3R	8575947	3R_8575947_SNP [dm3] 3R_12750225_SNP [dm6]	C	A	2.851e^-4	0.924	INTRON beat-Vc
X	7400875	X_7400875_DEL [dm3] X_7506842_DEL [dm6]	CC	C	2.877e^-4	0.924	INTERGENIC
X	18043817	X_18043817_SNP [dm3] X_18149784_SNP [dm6]	G	A	2.887e^-4	0.924	INTERGENIC
X	18043962	X_18043962_DEL [dm3] X_18149929_DEL [dm6]	ACTTATCA	A	2.887e^-4	0.924	INTERGENIC
X	18043978	X_18043978_SNP [dm3] X_18149945_SNP [dm6]	G	T	2.887e^-4	0.924	INTERGENIC
X	18043982	X_18043982_SNP [dm3] X_18149949_SNP [dm6]	C	T	2.887e^-4	0.924	INTERGENIC
3R	10972233	3R_10972233_SNP [dm3] 3R_15146511_SNP [dm6]	G	C	2.893e^-4	0.924	INTRON GlyS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25433810	3R_25433810_SNP [dm3] 3R_29608088_SNP [dm6]	T	G	2.898e^-4	0.924	UPSTREAM Diedel2 INTRON alph
2R	12250349	2R_12250349_SNP [dm3] 2R_16362844_SNP [dm6]	T	C	2.912e^-4	0.924	SYNONYMOUS_CODING CG6262 DOWNSTREAM CG15711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12043343	3L_12043343_SNP [dm3] 3L_12050243_SNP [dm6]	G	T	2.912e^-4	0.924	INTRON rols
2R	14589917	2R_14589917_SNP [dm3] 2R_18702412_SNP [dm6]	C	T	2.929e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3	TF binding site mE1_TFBS_HSA
3L	3845070	3L_3845070_INS [dm3] 3L_3845070_INS [dm6]	A	AA	2.964e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	7745973	3L_7745973_SNP [dm3] 3L_7752873_SNP [dm6]	A	T	2.972e^-4	0.924	INTRON CG32373
2R	11568954	2R_11568954_SNP [dm3] 2R_15681449_SNP [dm6]	C	T	2.991e^-4	0.924	SYNONYMOUS_CODING CG30091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7745967	3L_7745967_SNP [dm3] 3L_7752867_SNP [dm6]	G	A	3.044e^-4	0.924	INTRON CG32373
3R	19046925	3R_19046925_SNP [dm3] 3R_23221203_SNP [dm6]	G	C	3.092e^-4	0.924	INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1927681	3L_1927681_SNP [dm3] 3L_1927681_SNP [dm6]	A	G	3.093e^-4	0.924	INTRON Dbx	TF binding site mE1_TFBS_chinmo
2R	14590313	2R_14590313_SNP [dm3] 2R_18702808_SNP [dm6]	T	A	3.117e^-4	0.924	SYNONYMOUS_CODING Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14102962	X_14102962_SNP [dm3] X_14208929_SNP [dm6]	G	A	3.117e^-4	0.924	INTRON l_1_G0007 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	2213302	X_2213302_SNP [dm3] X_2319269_SNP [dm6]	A	G	3.117e^-4	0.924	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6944373	2R_6944373_SNP [dm3] 2R_11056868_SNP [dm6]	C	G	3.130e^-4	0.924	INTRON luna
X	19350331	X_19350331_INS [dm3] X_19456298_INS [dm6]	C	CC	3.143e^-4	0.924	INTRON kek5
3R	18091282	3R_18091282_SNP [dm3] 3R_22265560_SNP [dm6]	A	T	3.194e^-4	0.924	INTRON SKIP
2R	7932873	2R_7932873_SNP [dm3] 2R_12045368_SNP [dm6]	G	A	3.209e^-4	0.924	INTRON Drep-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15760861	3L_15760861_SNP [dm3] 3L_15767761_SNP [dm6]	T	A	3.227e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13779227	3R_13779227_SNP [dm3] 3R_17953505_SNP [dm6]	T	G	3.227e^-4	0.924	INTRON cpo	TF binding site mE1_TFBS_cad
3R	20063596	3R_20063596_SNP [dm3] 3R_24237874_SNP [dm6]	G	A	3.271e^-4	0.924	SYNONYMOUS_CODING mask DOWNSTREAM scaRNA:MeU2-G25	TF binding site mE1_TFBS_cad
3R	20063842	3R_20063842_SNP [dm3] 3R_24238120_SNP [dm6]	C	G	3.271e^-4	0.924	SYNONYMOUS_CODING mask DOWNSTREAM scaRNA:MeU2-G25	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26134525	3R_26134525_INS [dm3] 3R_30308803_INS [dm6]	A	AA	3.271e^-4	0.924	INTRON hdc
2R	20499578	2R_20499578_SNP [dm3] 2R_24612055_SNP [dm6]	T	G	3.328e^-4	0.924	UTR_5_PRIME CG3608 UPSTREAM CG4741 INTRON CG4741 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20502377	2R_20502377_SNP [dm3] 2R_24614854_SNP [dm6]	A	G	3.328e^-4	0.924	SYNONYMOUS_CODING CG4741 UPSTREAM CG4741 DOWNSTREAM CG3608 & 1 other
2R	20502646	2R_20502646_SNP [dm3] 2R_24615123_SNP [dm6]	G	C	3.328e^-4	0.924	UTR_5_PRIME CG4741 UPSTREAM CG4741 DOWNSTREAM CG13594
3L	8749655	3L_8749655_SNP [dm3] 3L_8756555_SNP [dm6]	G	T	3.328e^-4	0.924	NON_SYNONYMOUS_CODING CG6576 INTRON Fhos
X	12243358	X_12243358_SNP [dm3] X_12349325_SNP [dm6]	C	A	3.329e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12648906	2L_12648906_SNP [dm3] 2L_12648906_SNP [dm6]	G	A	3.334e^-4	0.924	INTERGENIC
2L	12649015	2L_12649015_SNP [dm3] 2L_12649015_SNP [dm6]	T	C	3.334e^-4	0.924	INTERGENIC
2L	12649118	2L_12649118_SNP [dm3] 2L_12649118_SNP [dm6]	T	C	3.334e^-4	0.924	INTERGENIC
2L	12649121	2L_12649121_SNP [dm3] 2L_12649121_SNP [dm6]	A	G	3.334e^-4	0.924	INTERGENIC
X	7747159	X_7747159_SNP [dm3] X_7853126_SNP [dm6]	T	G	3.334e^-4	0.924	SYNONYMOUS_CODING CG10920	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7253441	2R_7253441_SNP [dm3] 2R_11365936_SNP [dm6]	A	C	3.379e^-4	0.924	UPSTREAM CG13204 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	21850004	X_21850004_SNP [dm3] X_22448168_SNP [dm6]	G	A	3.379e^-4	0.924	DOWNSTREAM CG14621 INTRON CG14615
3R	26494780	3R_26494780_SNP [dm3] 3R_30669058_SNP [dm6]	A	C	3.384e^-4	0.924	INTERGENIC
2R	10720878	2R_10720878_SNP [dm3] 2R_14833373_SNP [dm6]	T	G	3.404e^-4	0.924	NON_SYNONYMOUS_CODING CG10205
2L	10358455	2L_10358455_SNP [dm3] 2L_10358455_SNP [dm6]	C	T	3.423e^-4	0.924	DOWNSTREAM CG5045 INTRON Cand1	TF binding site mE1_TFBS_cad
2R	12959760	2R_12959760_SNP [dm3] 2R_17072255_SNP [dm6]	T	C	3.423e^-4	0.924	NON_SYNONYMOUS_CODING CG30460 UPSTREAM CG30460	TF binding site mE1_TFBS_cad
2R	12959778	2R_12959778_SNP [dm3] 2R_17072273_SNP [dm6]	T	C	3.423e^-4	0.924	NON_SYNONYMOUS_CODING CG30460 UPSTREAM CG30460	TF binding site mE1_TFBS_cad
2R	12959788	2R_12959788_SNP [dm3] 2R_17072283_SNP [dm6]	C	G	3.423e^-4	0.924	SYNONYMOUS_CODING CG30460 UPSTREAM CG30460	TF binding site mE1_TFBS_cad
2R	5563020	2R_5563020_SNP [dm3] 2R_9675515_SNP [dm6]	A	C	3.423e^-4	0.924	INTRON Mmp2	TF binding site mE1_TFBS_inv
2R	5563033	2R_5563033_SNP [dm3] 2R_9675528_SNP [dm6]	C	G	3.423e^-4	0.924	INTRON Mmp2	TF binding site mE1_TFBS_inv
2R	5563063	2R_5563063_SNP [dm3] 2R_9675558_SNP [dm6]	C	T	3.423e^-4	0.924	INTRON Mmp2	TF binding site mE1_TFBS_inv
X	5748092	X_5748092_SNP [dm3] X_5854059_SNP [dm6]	T	A	3.423e^-4	0.924	SYNONYMOUS_CODING CG43136
2L	10512321	2L_10512321_SNP [dm3] 2L_10512321_SNP [dm6]	G	T	3.432e^-4	0.924	SYNONYMOUS_CODING Fatp UTR_3_PRIME CG45083	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14590352	2R_14590352_SNP [dm3] 2R_18702847_SNP [dm6]	T	G	3.432e^-4	0.924	SYNONYMOUS_CODING Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3878070	3L_3878070_SNP [dm3] 3L_3878070_SNP [dm6]	C	G	3.432e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15004818	X_15004818_SNP [dm3] X_15110785_SNP [dm6]	C	T	3.438e^-4	0.924	DOWNSTREAM Rab3-GEF INTRON Rab3-GEF
3R	18892072	3R_18892072_SNP [dm3] 3R_23066350_SNP [dm6]	G	A	3.504e^-4	0.924	INTRON CG17111
2L	11099937	2L_11099937_SNP [dm3] 2L_11099937_SNP [dm6]	C	T	3.514e^-4	0.924	INTRON Ge-1	TF binding site BDTNP1_TFBS_dl
2L	1741002	2L_1741002_SNP [dm3] 2L_1741002_SNP [dm6]	G	T	3.514e^-4	0.924	INTRON CG17646
2L	4297855	2L_4297855_DEL [dm3] 2L_4297855_DEL [dm6]	TGGAT	T	3.514e^-4	0.924	INTRON tutl
3L	18204881	3L_18204881_SNP [dm3] 3L_18211781_SNP [dm6]	G	C	3.517e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	10972206	3R_10972206_SNP [dm3] 3R_15146484_SNP [dm6]	A	G	3.531e^-4	0.924	INTRON GlyS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18062863	2R_18062863_SNP [dm3] 2R_22175358_SNP [dm6]	A	T	3.538e^-4	0.924	UPSTREAM CG3045 INTRON CG6758 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3L	8578819	3L_8578819_SNP [dm3] 3L_8585719_SNP [dm6]	A	T	3.538e^-4	0.924	INTRON CG43078
3R	19649740	3R_19649740_SNP [dm3] 3R_23824018_SNP [dm6]	T	G	3.538e^-4	0.924	INTRON CG34355
3L	4769553	3L_4769553_SNP [dm3] 3L_4769553_SNP [dm6]	T	A	3.542e^-4	0.924	INTRON RhoGEF64C
3L	4769554	3L_4769554_SNP [dm3] 3L_4769554_SNP [dm6]	G	T	3.542e^-4	0.924	INTRON RhoGEF64C
3L	18173384	3L_18173384_SNP [dm3] 3L_18180284_SNP [dm6]	C	A	3.558e^-4	0.924	INTRON W
3L	17820679	3L_17820679_SNP [dm3] 3L_17827579_SNP [dm6]	T	G	3.613e^-4	0.924	INTRON Grd
3L	17820739	3L_17820739_SNP [dm3] 3L_17827639_SNP [dm6]	A	T	3.613e^-4	0.924	INTRON Grd
3L	7753937	3L_7753937_SNP [dm3] 3L_7760837_SNP [dm6]	T	A	3.617e^-4	0.924	UPSTREAM Hn INTRON Hn
X	846527	X_846527_SNP [dm3] X_952494_SNP [dm6]	C	T	3.628e^-4	0.924	UPSTREAM CG3690 INTERGENIC
3L	18173341	3L_18173341_INS [dm3] 3L_18180241_INS [dm6]	T	TTCACTATT	3.632e^-4	0.924	INTRON W
2R	17965944	2R_17965944_SNP [dm3] 2R_22078439_SNP [dm6]	C	T	3.644e^-4	0.924	UTR_3_PRIME GlcT-1
3R	27836522	3R_27836522_SNP [dm3] 3R_32010800_SNP [dm6]	T	A	3.660e^-4	0.924	INTRON heph
X	852211	X_852211_SNP [dm3] X_958178_SNP [dm6]	G	A	3.683e^-4	0.924	INTERGENIC
2R	12265227	2R_12265227_SNP [dm3] 2R_16377722_SNP [dm6]	G	T	3.687e^-4	0.924	INTERGENIC
2R	7283055	2R_7283055_SNP [dm3] 2R_11395550_SNP [dm6]	C	T	3.687e^-4	0.924	INTRON sprt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3250277	X_3250277_SNP [dm3] X_3356244_SNP [dm6]	T	A	3.691e^-4	0.924	INTERGENIC
3R	19792941	3R_19792941_SNP [dm3] 3R_23967219_SNP [dm6]	T	G	3.741e^-4	0.924	INTRON CG31140
3R	19792946	3R_19792946_SNP [dm3] 3R_23967224_SNP [dm6]	A	C	3.741e^-4	0.924	INTRON CG31140
3R	19792951	3R_19792951_DEL [dm3] 3R_23967229_DEL [dm6]	AATT	A	3.741e^-4	0.924	INTRON CG31140
3L	12064086	3L_12064086_SNP [dm3] 3L_12070986_SNP [dm6]	C	T	3.758e^-4	0.924	NON_SYNONYMOUS_CODING Sema-5c
2R	7932907	2R_7932907_SNP [dm3] 2R_12045402_SNP [dm6]	A	T	3.786e^-4	0.924	INTRON Drep-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7932929	2R_7932929_SNP [dm3] 2R_12045424_SNP [dm6]	C	G	3.786e^-4	0.924	INTRON Drep-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7255260	2R_7255260_SNP [dm3] 2R_11367755_SNP [dm6]	A	T	3.796e^-4	0.924	UPSTREAM CG13204 INTRON CG13204	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	19145341	3L_19145341_SNP [dm3] 3L_19152241_SNP [dm6]	G	A	3.796e^-4	0.924	INTRON fz2	TF binding site BDTNP1_TFBS_da
3L	19145627	3L_19145627_SNP [dm3] 3L_19152527_SNP [dm6]	G	A	3.796e^-4	0.924	INTRON fz2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	19145710	3L_19145710_SNP [dm3] 3L_19152610_SNP [dm6]	T	A	3.796e^-4	0.924	INTRON fz2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	10929248	2L_10929248_SNP [dm3] 2L_10929248_SNP [dm6]	C	T	3.850e^-4	0.924	INTRON dpr2
2R	11502352	2R_11502352_SNP [dm3] 2R_15614847_SNP [dm6]	C	T	3.850e^-4	0.924	UTR_5_PRIME CG42524	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14586398	2R_14586398_SNP [dm3] 2R_18698893_SNP [dm6]	A	T	3.850e^-4	0.924	INTRON Sik3
2R	14590292	2R_14590292_SNP [dm3] 2R_18702787_SNP [dm6]	A	T	3.850e^-4	0.924	SYNONYMOUS_CODING Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13943536	3L_13943536_SNP [dm3] 3L_13950436_SNP [dm6]	C	T	3.850e^-4	0.924	INTRON CG32137	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14102983	X_14102983_SNP [dm3] X_14208950_SNP [dm6]	T	A	3.850e^-4	0.924	INTRON l_1_G0007 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17506620	X_17506620_INS [dm3] X_17612587_INS [dm6]	G	AA	3.850e^-4	0.924	INTERGENIC
2R	19044028	2R_19044028_SNP [dm3] 2R_23156505_SNP [dm6]	C	T	3.898e^-4	0.924	INTRON CG9899
3L	13381174	3L_13381174_SNP [dm3] 3L_13388074_SNP [dm6]	G	A	3.899e^-4	0.924	UPSTREAM CG10171 DOWNSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	11027457	3L_11027457_SNP [dm3] 3L_11034357_SNP [dm6]	A	C	3.917e^-4	0.924	UPSTREAM CR44547 INTERGENIC
2L	13935576	2L_13935576_SNP [dm3] 2L_13935576_SNP [dm6]	A	C	3.920e^-4	0.924	UPSTREAM CG16885 INTRON Ance-3
2L	4020137	2L_4020137_SNP [dm3] 2L_4020137_SNP [dm6]	C	T	3.923e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2L	9173551	2L_9173551_SNP [dm3] 2L_9173551_SNP [dm6]	A	G	3.923e^-4	0.924	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8839629	2R_8839629_SNP [dm3] 2R_12952124_SNP [dm6]	A	T	3.923e^-4	0.924	UPSTREAM CG13321 INTRON CG44251 & 1 other
3L	2821915	3L_2821915_SNP [dm3] 3L_2821915_SNP [dm6]	A	T	3.923e^-4	0.924	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2057165	X_2057165_SNP [dm3] X_2163132_SNP [dm6]	G	A	3.923e^-4	0.924	UPSTREAM Cyp4d1 INTRON CG3630
X	5415219	X_5415219_SNP [dm3] X_5521186_SNP [dm6]	G	T	3.950e^-4	0.924	INTERGENIC
3L	13434735	3L_13434735_SNP [dm3] 3L_13441635_SNP [dm6]	T	A	3.959e^-4	0.924	SYNONYMOUS_CODING CG14109 UPSTREAM CG10732	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13434738	3L_13434738_SNP [dm3] 3L_13441638_SNP [dm6]	T	C	3.959e^-4	0.924	SYNONYMOUS_CODING CG14109 UPSTREAM CG10732	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6839546	3L_6839546_INS [dm3] 3L_6846446_INS [dm6]	A	ATC	3.965e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7324863	3L_7324863_SNP [dm3] 3L_7331763_SNP [dm6]	G	A	3.965e^-4	0.924	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other	TF binding site mE1_TFBS_sens
2L	15114072	2L_15114072_SNP [dm3] 2L_15114072_SNP [dm6]	T	C	3.970e^-4	0.924	SYNONYMOUS_CODING stc DOWNSTREAM CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2L	15114078	2L_15114078_SNP [dm3] 2L_15114078_SNP [dm6]	A	C	3.970e^-4	0.924	SYNONYMOUS_CODING stc DOWNSTREAM CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_sens
2R	2683919	2R_2683919_SNP [dm3] 2R_6796414_SNP [dm6]	G	T	3.970e^-4	0.924	INTRON Epac
2R	4274586	2R_4274586_SNP [dm3] 2R_8387081_SNP [dm6]	A	T	3.970e^-4	0.924	UPSTREAM pdm3 INTRON pdm3
2R	12970470	2R_12970470_SNP [dm3] 2R_17082965_SNP [dm6]	T	C	3.989e^-4	0.924	INTRON CG30460
3R	27813399	3R_27813399_SNP [dm3] 3R_31987677_SNP [dm6]	C	G	4.006e^-4	0.924	INTRON CG2003 & 1 other
2R	11294762	2R_11294762_SNP [dm3] 2R_15407257_SNP [dm6]	G	T	4.098e^-4	0.924	INTRON CG43729
2R	7687410	2R_7687410_SNP [dm3] 2R_11799905_SNP [dm6]	A	C	4.098e^-4	0.924	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6228806	3R_6228806_DEL [dm3] 3R_10403084_DEL [dm6]	TGATTACATATGTATATTTT...	T	4.098e^-4	0.924	UTR_3_PRIME CG6325 DOWNSTREAM mthl11
2R	12212282	2R_12212282_SNP [dm3] 2R_16324777_SNP [dm6]	T	G	4.146e^-4	0.924	UTR_3_PRIME CG4282 DOWNSTREAM Vha44
3R	26535618	3R_26535618_SNP [dm3] 3R_30709896_SNP [dm6]	T	C	4.148e^-4	0.924	INTERGENIC
2R	7254751	2R_7254751_SNP [dm3] 2R_11367246_SNP [dm6]	T	C	4.151e^-4	0.924	INTRON CG13204	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3643779	X_3643779_SNP [dm3] X_3749746_SNP [dm6]	T	C	4.151e^-4	0.924	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9366541	3L_9366541_SNP [dm3] 3L_9373441_SNP [dm6]	T	C	4.159e^-4	0.924	SYNONYMOUS_CODING Hsp67Bb START_GAINED Hsp22 UTR_5_PRIME Hsp22 UPSTREAM Hsp67Bc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	25874669	3R_25874669_SNP [dm3] 3R_30048947_SNP [dm6]	T	C	4.189e^-4	0.924	SYNONYMOUS_CODING CG15528 UPSTREAM CR44046 DOWNSTREAM CG7943	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27837592	3R_27837592_SNP [dm3] 3R_32011870_SNP [dm6]	A	C	4.202e^-4	0.924	UPSTREAM CR45556 INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	27839431	3R_27839431_INS [dm3] 3R_32013709_INS [dm6]	A	AGGAGGCGCAGCAG...	4.202e^-4	0.924	DOWNSTREAM CR45556 INTRON heph	TF binding site BDTNP1_TFBS_twi
2R	11916949	2R_11916949_SNP [dm3] 2R_16029444_SNP [dm6]	A	G	4.232e^-4	0.924	INTRON CG8401
2R	11916973	2R_11916973_SNP [dm3] 2R_16029468_SNP [dm6]	A	G	4.232e^-4	0.924	INTRON CG8401
X	13891302	X_13891302_SNP [dm3] X_13997269_SNP [dm6]	T	C	4.232e^-4	0.924	INTRON ben	TF binding site BDTNP1_TFBS_dl
X	13891486	X_13891486_SNP [dm3] X_13997453_SNP [dm6]	A	G	4.232e^-4	0.924	INTRON ben	TF binding site BDTNP1_TFBS_dl
3L	2644999	3L_2644999_SNP [dm3] 3L_2644999_SNP [dm6]	G	T	4.288e^-4	0.924	UPSTREAM CG1143 INTERGENIC
3L	2645001	3L_2645001_SNP [dm3] 3L_2645001_SNP [dm6]	G	A	4.288e^-4	0.924	UPSTREAM CG1143 INTERGENIC
X	19200287	X_19200287_SNP [dm3] X_19306254_SNP [dm6]	A	T	4.288e^-4	0.924	UPSTREAM CG8051 INTRON CG8051
X	17568976	X_17568976_SNP [dm3] X_17674943_SNP [dm6]	G	A	4.308e^-4	0.924	SPLICE_SITE_REGION chas INTRON chas
2L	11457803	2L_11457803_SNP [dm3] 2L_11457803_SNP [dm6]	T	G	4.364e^-4	0.924	INTERGENIC
2L	2726177	2L_2726177_SNP [dm3] 2L_2726177_SNP [dm6]	T	A	4.364e^-4	0.924	INTRON CG31689
2L	2726193	2L_2726193_SNP [dm3] 2L_2726193_SNP [dm6]	T	C	4.364e^-4	0.924	INTRON CG31689
2L	2726194	2L_2726194_SNP [dm3] 2L_2726194_SNP [dm6]	C	T	4.364e^-4	0.924	INTRON CG31689
2L	3778049	2L_3778049_SNP [dm3] 2L_3778049_SNP [dm6]	A	G	4.364e^-4	0.924	UPSTREAM bowl INTRON bowl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10680651	2R_10680651_SNP [dm3] 2R_14793146_SNP [dm6]	G	A	4.364e^-4	0.924	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11312416	2R_11312416_SNP [dm3] 2R_15424911_SNP [dm6]	A	G	4.364e^-4	0.924	UTR_5_PRIME CG43729 UPSTREAM CG30472 & 1 other INTRON CG43729	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16805225	2R_16805225_SNP [dm3] 2R_20917720_SNP [dm6]	T	C	4.364e^-4	0.924	INTRON Rx
2R	16805261	2R_16805261_SNP [dm3] 2R_20917756_SNP [dm6]	T	A	4.364e^-4	0.924	INTRON Rx
2R	16874264	2R_16874264_SNP [dm3] 2R_20986759_SNP [dm6]	A	C	4.364e^-4	0.924	UPSTREAM CG15651 DOWNSTREAM CG3216 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18180719	2R_18180719_SNP [dm3] 2R_22293214_SNP [dm6]	G	C	4.364e^-4	0.924	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2R	18180735	2R_18180735_SNP [dm3] 2R_22293230_SNP [dm6]	G	C	4.364e^-4	0.924	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2R	18180738	2R_18180738_SNP [dm3] 2R_22293233_SNP [dm6]	A	T	4.364e^-4	0.924	UPSTREAM CG5819 DOWNSTREAM CR43422 INTERGENIC
2R	18184872	2R_18184872_SNP [dm3] 2R_22297367_SNP [dm6]	C	A	4.364e^-4	0.924	DOWNSTREAM CG5819 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	18185359	2R_18185359_SNP [dm3] 2R_22297854_SNP [dm6]	A	T	4.364e^-4	0.924	DOWNSTREAM CG5819 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5679679	2R_5679679_SNP [dm3] 2R_9792174_SNP [dm6]	T	C	4.364e^-4	0.924	DOWNSTREAM CR44208 INTRON CG1688
2R	5687048	2R_5687048_SNP [dm3] 2R_9799543_SNP [dm6]	C	A	4.364e^-4	0.924	INTRON CG1688
2R	5687073	2R_5687073_SNP [dm3] 2R_9799568_SNP [dm6]	A	G	4.364e^-4	0.924	INTRON CG1688
3L	10362198	3L_10362198_SNP [dm3] 3L_10369098_SNP [dm6]	T	C	4.364e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10473484	3L_10473484_SNP [dm3] 3L_10480384_SNP [dm6]	T	A	4.364e^-4	0.924	INTERGENIC
3L	11120101	3L_11120101_SNP [dm3] 3L_11127001_SNP [dm6]	G	C	4.364e^-4	0.924	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	11120786	3L_11120786_SNP [dm3] 3L_11127686_SNP [dm6]	T	C	4.364e^-4	0.924	INTRON CG42575
3L	11120788	3L_11120788_SNP [dm3] 3L_11127688_SNP [dm6]	G	C	4.364e^-4	0.924	INTRON CG42575
3L	12173863	3L_12173863_SNP [dm3] 3L_12180763_SNP [dm6]	C	G	4.364e^-4	0.924	INTRON CAH2
3L	12230134	3L_12230134_SNP [dm3] 3L_12237034_SNP [dm6]	C	T	4.364e^-4	0.924	INTRON app
3L	13111155	3L_13111155_SNP [dm3] 3L_13118055_SNP [dm6]	A	G	4.364e^-4	0.924	UTR_3_PRIME trn
3L	16277025	3L_16277025_SNP [dm3] 3L_16283925_SNP [dm6]	A	C	4.364e^-4	0.924	UPSTREAM CG13048 DOWNSTREAM CG13047 INTERGENIC
3L	4769378	3L_4769378_SNP [dm3] 3L_4769378_SNP [dm6]	A	T	4.364e^-4	0.924	INTRON RhoGEF64C
3L	5520397	3L_5520397_DEL [dm3] 3L_5527297_DEL [dm6]	CGG	C	4.364e^-4	0.924	INTRON Lkr
3L	5520403	3L_5520403_DEL [dm3] 3L_5527303_DEL [dm6]	TAT	A	4.364e^-4	0.924	INTRON Lkr
3L	5520423	3L_5520423_SNP [dm3] 3L_5527323_SNP [dm6]	T	A	4.364e^-4	0.924	INTRON Lkr
3L	6970052	3L_6970052_SNP [dm3] 3L_6976952_SNP [dm6]	C	G	4.364e^-4	0.924	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_dl
3L	6970091	3L_6970091_SNP [dm3] 3L_6976991_SNP [dm6]	C	T	4.364e^-4	0.924	INTRON Galphai EXON CR32385	TF binding site BDTNP1_TFBS_dl
3R	13333628	3R_13333628_SNP [dm3] 3R_17507906_SNP [dm6]	T	C	4.364e^-4	0.924	INTERGENIC
3R	14755919	3R_14755919_SNP [dm3] 3R_18930197_SNP [dm6]	A	C	4.364e^-4	0.924	INTRON CG42613
3R	15434006	3R_15434006_SNP [dm3] 3R_19608284_SNP [dm6]	C	T	4.364e^-4	0.924	NON_SYNONYMOUS_CODING CG17751
3R	6980056	3R_6980056_SNP [dm3] 3R_11154334_SNP [dm6]	C	T	4.364e^-4	0.924	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3R	6980115	3R_6980115_SNP [dm3] 3R_11154393_SNP [dm6]	A	T	4.364e^-4	0.924	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3R	6980195	3R_6980195_SNP [dm3] 3R_11154473_SNP [dm6]	G	T	4.364e^-4	0.924	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3R	6980198	3R_6980198_SNP [dm3] 3R_11154476_SNP [dm6]	T	C	4.364e^-4	0.924	UPSTREAM Ugt86Dc & 1 other INTERGENIC
3R	6980217	3R_6980217_SNP [dm3] 3R_11154495_SNP [dm6]	A	G	4.364e^-4	0.924	UPSTREAM Ugt86Dc & 1 other INTERGENIC
X	18042441	X_18042441_SNP [dm3] X_18148408_SNP [dm6]	G	A	4.364e^-4	0.924	INTERGENIC
X	18042479	X_18042479_SNP [dm3] X_18148446_SNP [dm6]	C	T	4.364e^-4	0.924	INTERGENIC
X	18042526	X_18042526_SNP [dm3] X_18148493_SNP [dm6]	T	G	4.364e^-4	0.924	INTERGENIC
X	18042537	X_18042537_SNP [dm3] X_18148504_SNP [dm6]	T	A	4.364e^-4	0.924	INTERGENIC
X	18042541	X_18042541_SNP [dm3] X_18148508_SNP [dm6]	C	T	4.364e^-4	0.924	INTERGENIC
X	18042543	X_18042543_SNP [dm3] X_18148510_SNP [dm6]	G	T	4.364e^-4	0.924	INTERGENIC
X	4302296	X_4302296_SNP [dm3] X_4408263_SNP [dm6]	T	G	4.364e^-4	0.924	INTRON CR32773
X	5712564	X_5712564_SNP [dm3] X_5818531_SNP [dm6]	G	A	4.364e^-4	0.924	UPSTREAM CG15765 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5712788	X_5712788_SNP [dm3] X_5818755_SNP [dm6]	G	A	4.364e^-4	0.924	UPSTREAM CG15765 INTRON CG15765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5712879	X_5712879_SNP [dm3] X_5818846_SNP [dm6]	G	T	4.364e^-4	0.924	UPSTREAM CG15765 INTRON CG15765	TF binding site BDTNP1_TFBS_dl
X	6228795	X_6228795_SNP [dm3] X_6334762_SNP [dm6]	T	C	4.364e^-4	0.924	INTERGENIC
X	6228817	X_6228817_SNP [dm3] X_6334784_SNP [dm6]	A	C	4.364e^-4	0.924	INTERGENIC
X	6229041	X_6229041_SNP [dm3] X_6335008_SNP [dm6]	A	C	4.364e^-4	0.924	INTERGENIC
X	6229076	X_6229076_SNP [dm3] X_6335043_SNP [dm6]	T	A	4.364e^-4	0.924	INTERGENIC
2R	17076235	2R_17076235_SNP [dm3] 2R_21188730_SNP [dm6]	G	T	4.381e^-4	0.924	SYNONYMOUS_CODING tud
3R	18924043	3R_18924043_SNP [dm3] 3R_23098321_SNP [dm6]	C	T	4.395e^-4	0.924	NON_SYNONYMOUS_CODING CG6733 INTRON CG13830
3R	18924290	3R_18924290_SNP [dm3] 3R_23098568_SNP [dm6]	T	A	4.395e^-4	0.924	NON_SYNONYMOUS_CODING CG6733 UPSTREAM CG6738 INTRON CG13830
3R	18924440	3R_18924440_SNP [dm3] 3R_23098718_SNP [dm6]	A	G	4.395e^-4	0.924	NON_SYNONYMOUS_CODING CG6733 UPSTREAM CG6738 INTRON CG13830
3R	18924472	3R_18924472_SNP [dm3] 3R_23098750_SNP [dm6]	T	C	4.395e^-4	0.924	SYNONYMOUS_CODING CG6733 UPSTREAM CG6738 INTRON CG13830
3R	18924484	3R_18924484_SNP [dm3] 3R_23098762_SNP [dm6]	G	A	4.395e^-4	0.924	SYNONYMOUS_CODING CG6733 UPSTREAM CG6738 INTRON CG13830
3R	18924487	3R_18924487_SNP [dm3] 3R_23098765_SNP [dm6]	G	A	4.395e^-4	0.924	SYNONYMOUS_CODING CG6733 UPSTREAM CG6738 INTRON CG13830
3L	11234825	3L_11234825_SNP [dm3] 3L_11241725_SNP [dm6]	C	A	4.411e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11234828	3L_11234828_SNP [dm3] 3L_11241728_SNP [dm6]	C	T	4.411e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11649699	3L_11649699_SNP [dm3] 3L_11656599_SNP [dm6]	G	A	4.431e^-4	0.924	UPSTREAM mir-274 INTRON CG32085
3R	19765967	3R_19765967_SNP [dm3] 3R_23940245_SNP [dm6]	C	G	4.433e^-4	0.924	INTRON Gdh
3R	27813328	3R_27813328_SNP [dm3] 3R_31987606_SNP [dm6]	T	A	4.439e^-4	0.924	INTRON CG2003 & 1 other
3L	14481679	3L_14481679_SNP [dm3] 3L_14488579_SNP [dm6]	C	A	4.450e^-4	0.924	INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	14481696	3L_14481696_SNP [dm3] 3L_14488596_SNP [dm6]	T	C	4.450e^-4	0.924	INTRON bbg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	20215264	3R_20215264_SNP [dm3] 3R_24389542_SNP [dm6]	A	T	4.450e^-4	0.924	INTRON CG5768
3R	25871368	3R_25871368_SNP [dm3] 3R_30045646_SNP [dm6]	A	T	4.450e^-4	0.924	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
3R	25871529	3R_25871529_SNP [dm3] 3R_30045807_SNP [dm6]	T	C	4.450e^-4	0.924	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	25871555	3R_25871555_SNP [dm3] 3R_30045833_SNP [dm6]	A	G	4.450e^-4	0.924	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	25871557	3R_25871557_SNP [dm3] 3R_30045835_SNP [dm6]	A	T	4.450e^-4	0.924	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	25871560	3R_25871560_SNP [dm3] 3R_30045838_SNP [dm6]	T	A	4.450e^-4	0.924	UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	25871588	3R_25871588_SNP [dm3] 3R_30045866_SNP [dm6]	T	A	4.450e^-4	0.924	UTR_5_PRIME RpL32 UPSTREAM CG7943 DOWNSTREAM Sry-delta INTRON RpL32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	26231810	3R_26231810_SNP [dm3] 3R_30406088_SNP [dm6]	A	T	4.450e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26231819	3R_26231819_SNP [dm3] 3R_30406097_SNP [dm6]	C	T	4.450e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26231828	3R_26231828_SNP [dm3] 3R_30406106_SNP [dm6]	A	G	4.450e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10186436	2L_10186436_SNP [dm3] 2L_10186436_SNP [dm6]	T	C	4.474e^-4	0.924	INTRON Sur
2R	19717831	2R_19717831_SNP [dm3] 2R_23830308_SNP [dm6]	A	G	4.476e^-4	0.924	INTRON CG5549
2R	19717857	2R_19717857_SNP [dm3] 2R_23830334_SNP [dm6]	G	A	4.476e^-4	0.924	INTRON CG5549
3R	25798488	3R_25798488_SNP [dm3] 3R_29972766_SNP [dm6]	C	A	4.477e^-4	0.924	INTERGENIC
3L	15986746	3L_15986746_SNP [dm3] 3L_15993646_SNP [dm6]	G	A	4.502e^-4	0.924	UTR_3_PRIME CG5830
3R	19393801	3R_19393801_DEL [dm3] 3R_23568079_DEL [dm6]	TT	T	4.502e^-4	0.924	INTRON beat-IV
3L	2340206	3L_2340206_SNP [dm3] 3L_2340206_SNP [dm6]	C	T	4.526e^-4	0.924	INTRON MsR1
3L	12878397	3L_12878397_SNP [dm3] 3L_12885297_SNP [dm6]	T	C	4.544e^-4	0.924	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12135128	2L_12135128_SNP [dm3] 2L_12135128_SNP [dm6]	C	A	4.552e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	12295209	3L_12295209_SNP [dm3] 3L_12302109_SNP [dm6]	G	A	4.570e^-4	0.924	DOWNSTREAM CR44551 & 1 other INTERGENIC
2L	11910692	2L_11910692_SNP [dm3] 2L_11910692_SNP [dm6]	A	G	4.599e^-4	0.924	INTRON Pde1c
2L	4497566	2L_4497566_SNP [dm3] 2L_4497566_SNP [dm6]	T	C	4.604e^-4	0.924	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4497568	2L_4497568_SNP [dm3] 2L_4497568_SNP [dm6]	G	A	4.604e^-4	0.924	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12621691	2R_12621691_SNP [dm3] 2R_16734186_SNP [dm6]	A	T	4.604e^-4	0.924	INTERGENIC
2R	12621696	2R_12621696_SNP [dm3] 2R_16734191_SNP [dm6]	T	C	4.604e^-4	0.924	INTERGENIC
2R	7276983	2R_7276983_SNP [dm3] 2R_11389478_SNP [dm6]	T	C	4.604e^-4	0.924	UPSTREAM CG30022 INTRON sprt
2L	661604	2L_661604_SNP [dm3] 2L_661604_SNP [dm6]	T	C	4.615e^-4	0.924	INTRON ds	TF binding site mE1_TFBS_HSA
2R	19596805	2R_19596805_SNP [dm3] 2R_23709282_SNP [dm6]	G	A	4.622e^-4	0.924	DOWNSTREAM l_2_tid INTRON l_2_not EXON CR45326	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	6257938	2R_6257938_SNP [dm3] 2R_10370433_SNP [dm6]	A	G	4.625e^-4	0.924	INTRON CG42732
2R	6258202	2R_6258202_SNP [dm3] 2R_10370697_SNP [dm6]	G	A	4.625e^-4	0.924	INTRON CG42732
2R	6258210	2R_6258210_SNP [dm3] 2R_10370705_SNP [dm6]	C	T	4.625e^-4	0.924	INTRON CG42732
2R	13642289	2R_13642289_SNP [dm3] 2R_17754784_SNP [dm6]	G	A	4.655e^-4	0.924	INTRON CG6385	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19120191	3L_19120191_SNP [dm3] 3L_19127091_SNP [dm6]	G	A	4.656e^-4	0.924	INTRON CG14082
3L	19120230	3L_19120230_SNP [dm3] 3L_19127130_SNP [dm6]	C	G	4.656e^-4	0.924	INTRON CG14082
3R	23480003	3R_23480003_SNP [dm3] 3R_27654281_SNP [dm6]	C	T	4.657e^-4	0.924	DOWNSTREAM RpS10a INTRON tau	TF binding site mE1_TFBS_inv
2L	568162	2L_568162_INS [dm3] 2L_568162_INS [dm6]	T	TTTACTTAAGAA...	4.683e^-4	0.924	UPSTREAM CG2807 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10721237	2R_10721237_SNP [dm3] 2R_14833732_SNP [dm6]	G	A	4.729e^-4	0.924	SYNONYMOUS_CODING CG10205 UTR_3_PRIME CG10205
2R	19704463	2R_19704463_SNP [dm3] 2R_23816940_SNP [dm6]	G	C	4.732e^-4	0.924	INTRON CG4797
3L	16327048	3L_16327048_SNP [dm3] 3L_16333948_SNP [dm6]	G	A	4.732e^-4	0.924	DOWNSTREAM CG13056 INTERGENIC
3L	2571656	3L_2571656_SNP [dm3] 3L_2571656_SNP [dm6]	G	A	4.732e^-4	0.924	INTRON msn
3R	20212245	3R_20212245_SNP [dm3] 3R_24386523_SNP [dm6]	C	T	4.732e^-4	0.924	INTRON CG5768
2R	7286921	2R_7286921_SNP [dm3] 2R_11399416_SNP [dm6]	T	C	4.732e^-4	0.924	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2821996	3L_2821996_SNP [dm3] 3L_2821996_SNP [dm6]	A	T	4.738e^-4	0.924	UPSTREAM CG43444 INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8715887	2R_8715887_SNP [dm3] 2R_12828382_SNP [dm6]	A	T	4.740e^-4	0.924	INTERGENIC
3L	10939738	3L_10939738_SNP [dm3] 3L_10946638_SNP [dm6]	A	G	4.746e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6563846	3L_6563846_SNP [dm3] 3L_6570746_SNP [dm6]	A	T	4.746e^-4	0.924	INTRON CG18769 & 1 other
3L	6563865	3L_6563865_SNP [dm3] 3L_6570765_SNP [dm6]	T	A	4.746e^-4	0.924	INTRON CG18769 & 1 other
3L	6563875	3L_6563875_SNP [dm3] 3L_6570775_SNP [dm6]	A	T	4.746e^-4	0.924	INTRON CG18769 & 1 other
3L	6563878	3L_6563878_SNP [dm3] 3L_6570778_SNP [dm6]	C	T	4.746e^-4	0.924	INTRON CG18769 & 1 other
3L	6563881	3L_6563881_SNP [dm3] 3L_6570781_SNP [dm6]	A	G	4.746e^-4	0.924	INTRON CG18769 & 1 other
X	5336577	X_5336577_SNP [dm3] X_5442544_SNP [dm6]	C	A	4.815e^-4	0.924	INTERGENIC
3L	5991916	3L_5991916_SNP [dm3] 3L_5998816_SNP [dm6]	A	C	4.830e^-4	0.924	INTRON PVRAP
3L	6197148	3L_6197148_SNP [dm3] 3L_6204048_SNP [dm6]	G	T	4.830e^-4	0.924	UTR_3_PRIME LanA DOWNSTREAM CG8219	TF binding site mE1_TFBS_cad
2R	13642241	2R_13642241_SNP [dm3] 2R_17754736_SNP [dm6]	C	T	4.898e^-4	0.924	SYNONYMOUS_CODING CG6385	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	3294649	3L_3294649_SNP [dm3] 3L_3294649_SNP [dm6]	G	C	4.898e^-4	0.924	UPSTREAM CG12009 INTRON CG12009
3R	19175205	3R_19175205_SNP [dm3] 3R_23349483_SNP [dm6]	A	C	4.905e^-4	0.924	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2726188	2L_2726188_SNP [dm3] 2L_2726188_SNP [dm6]	A	T	4.947e^-4	0.924	INTRON CG31689
2L	2726190	2L_2726190_SNP [dm3] 2L_2726190_SNP [dm6]	G	A	4.947e^-4	0.924	INTRON CG31689
2R	9701403	2R_9701403_SNP [dm3] 2R_13813898_SNP [dm6]	G	A	4.947e^-4	0.924	INTRON stj
X	5712904	X_5712904_SNP [dm3] X_5818871_SNP [dm6]	G	A	4.947e^-4	0.924	UPSTREAM CG15765 INTRON CG15765	TF binding site BDTNP1_TFBS_dl
3L	15263085	3L_15263085_SNP [dm3] 3L_15269985_SNP [dm6]	C	T	4.954e^-4	0.924	INTERGENIC
2L	22318990	2L_22318990_SNP [dm3] 2L_22318990_SNP [dm6]	G	A	4.955e^-4	0.924	INTRON CG17018
2R	16981199	2R_16981199_SNP [dm3] 2R_21093694_SNP [dm6]	T	A	4.955e^-4	0.924	INTRON CG34396
2R	16981230	2R_16981230_SNP [dm3] 2R_21093725_SNP [dm6]	T	C	4.955e^-4	0.924	INTRON CG34396
2R	16987637	2R_16987637_SNP [dm3] 2R_21100132_SNP [dm6]	G	A	4.955e^-4	0.924	INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16987641	2R_16987641_SNP [dm3] 2R_21100136_SNP [dm6]	A	T	4.955e^-4	0.924	INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16987645	2R_16987645_SNP [dm3] 2R_21100140_SNP [dm6]	T	A	4.955e^-4	0.924	INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16987658	2R_16987658_SNP [dm3] 2R_21100153_SNP [dm6]	T	C	4.955e^-4	0.924	INTRON CG34396	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16987659	2R_16987659_SNP [dm3] 2R_21100154_SNP [dm6]	C	G	4.955e^-4	0.924	INTRON CG34396	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18344606	2R_18344606_SNP [dm3] 2R_22457101_SNP [dm6]	C	T	4.955e^-4	0.924	INTRON CG10384
2R	18344613	2R_18344613_SNP [dm3] 2R_22457108_SNP [dm6]	T	C	4.955e^-4	0.924	INTRON CG10384
2R	18601002	2R_18601002_SNP [dm3] 2R_22713497_SNP [dm6]	T	G	4.955e^-4	0.924	SYNONYMOUS_CODING CG30268 DOWNSTREAM CG30275
3L	1452473	3L_1452473_SNP [dm3] 3L_1452473_SNP [dm6]	C	A	4.955e^-4	0.924	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	1452475	3L_1452475_SNP [dm3] 3L_1452475_SNP [dm6]	G	T	4.955e^-4	0.924	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	1452477	3L_1452477_SNP [dm3] 3L_1452477_SNP [dm6]	A	C	4.955e^-4	0.924	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
3L	2268938	3L_2268938_SNP [dm3] 3L_2268938_SNP [dm6]	C	T	4.955e^-4	0.924	SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I & 1 other	TF binding site mE1_TFBS_cad
3L	5383366	3L_5383366_SNP [dm3] 3L_5390266_SNP [dm6]	C	T	4.955e^-4	0.924	INTERGENIC
3L	5383369	3L_5383369_SNP [dm3] 3L_5390269_SNP [dm6]	G	A	4.955e^-4	0.924	INTERGENIC
3L	5383378	3L_5383378_SNP [dm3] 3L_5390278_SNP [dm6]	A	T	4.955e^-4	0.924	INTERGENIC
3L	5383387	3L_5383387_SNP [dm3] 3L_5390287_SNP [dm6]	T	G	4.955e^-4	0.924	INTERGENIC
3L	5383388	3L_5383388_DEL [dm3] 3L_5390288_DEL [dm6]	GCATACTAT	G	4.955e^-4	0.924	INTERGENIC
3R	17911870	3R_17911870_SNP [dm3] 3R_22086148_SNP [dm6]	T	A	4.955e^-4	0.924	UPSTREAM CG5791 INTRON CG5778
3R	18958249	3R_18958249_SNP [dm3] 3R_23132527_SNP [dm6]	T	C	4.955e^-4	0.924	INTRON hh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18958905	3R_18958905_SNP [dm3] 3R_23133183_SNP [dm6]	G	A	4.955e^-4	0.924	SYNONYMOUS_CODING hh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21785139	3R_21785139_SNP [dm3] 3R_25959417_SNP [dm6]	G	A	4.955e^-4	0.924	UTR_5_PRIME CG14540
3R	25425346	3R_25425346_SNP [dm3] 3R_29599624_SNP [dm6]	G	A	4.955e^-4	0.924	SYNONYMOUS_CODING CG7568 DOWNSTREAM alph INTRON alph
3R	25433935	3R_25433935_SNP [dm3] 3R_29608213_SNP [dm6]	G	T	4.955e^-4	0.924	UPSTREAM Diedel2 INTRON alph
X	21094538	X_21094538_SNP [dm3] X_21223511_SNP [dm6]	T	C	4.955e^-4	0.924	INTRON CG32521
X	21094561	X_21094561_DEL [dm3] X_21223534_DEL [dm6]	TT	T	4.955e^-4	0.924	INTRON CG32521
X	21094711	X_21094711_SNP [dm3] X_21223684_SNP [dm6]	C	G	4.955e^-4	0.924	INTRON CG32521
2L	507163	2L_507163_SNP [dm3] 2L_507163_SNP [dm6]	C	T	4.955e^-4	0.924	INTRON ush
2R	12212131	2R_12212131_SNP [dm3] 2R_16324626_SNP [dm6]	A	G	4.955e^-4	0.924	UTR_3_PRIME CG4282 DOWNSTREAM Vha44
2R	19414530	2R_19414530_SNP [dm3] 2R_23527007_SNP [dm6]	G	A	4.955e^-4	0.924	DOWNSTREAM bw INTRON mi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6013902	X_6013902_SNP [dm3] X_6119869_SNP [dm6]	A	T	4.955e^-4	0.924	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
3R	25433816	3R_25433816_SNP [dm3] 3R_29608094_SNP [dm6]	T	G	4.996e^-4	0.924	UPSTREAM Diedel2 INTRON alph
2R	17514290	2R_17514290_SNP [dm3] 2R_21626785_SNP [dm6]	T	A	5.002e^-4	0.924	INTRON mahj
X	18870394	X_18870394_SNP [dm3] X_18976361_SNP [dm6]	T	G	5.021e^-4	0.924	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	18175189	2R_18175189_SNP [dm3] 2R_22287684_SNP [dm6]	A	G	5.046e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
X	5861062	X_5861062_SNP [dm3] X_5967029_SNP [dm6]	G	A	5.046e^-4	0.924	INTRON Grip
X	853904	X_853904_SNP [dm3] X_959871_SNP [dm6]	T	A	5.046e^-4	0.924	INTERGENIC
X	854297	X_854297_SNP [dm3] X_960264_SNP [dm6]	G	A	5.046e^-4	0.924	INTERGENIC
X	855489	X_855489_SNP [dm3] X_961456_SNP [dm6]	T	C	5.046e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15806255	3L_15806255_SNP [dm3] 3L_15813155_SNP [dm6]	A	G	5.047e^-4	0.924	INTRON fwe
3L	15806264	3L_15806264_SNP [dm3] 3L_15813164_SNP [dm6]	C	A	5.047e^-4	0.924	INTRON fwe
3L	15806294	3L_15806294_SNP [dm3] 3L_15813194_SNP [dm6]	A	G	5.047e^-4	0.924	INTRON fwe
X	11138197	X_11138197_SNP [dm3] X_11244164_SNP [dm6]	T	C	5.052e^-4	0.924	INTRON CG44422
X	5347349	X_5347349_SNP [dm3] X_5453316_SNP [dm6]	C	T	5.052e^-4	0.924	INTRON SPR
3L	7746765	3L_7746765_SNP [dm3] 3L_7753665_SNP [dm6]	A	G	5.091e^-4	0.924	UPSTREAM CG7409 INTRON CG32373
3L	7746766	3L_7746766_SNP [dm3] 3L_7753666_SNP [dm6]	A	G	5.091e^-4	0.924	UPSTREAM CG7409 INTRON CG32373
3L	17824082	3L_17824082_SNP [dm3] 3L_17830982_SNP [dm6]	A	G	5.103e^-4	0.924	INTRON Grd
3L	22313496	3L_22313496_SNP [dm3] 3L_22320396_SNP [dm6]	T	C	5.113e^-4	0.924	INTRON Ten-m
3R	21789264	3R_21789264_SNP [dm3] 3R_25963542_SNP [dm6]	T	A	5.143e^-4	0.924	UTR_5_PRIME boss
3R	8904513	3R_8904513_SNP [dm3] 3R_13078791_SNP [dm6]	T	C	5.144e^-4	0.924	DOWNSTREAM sim INTERGENIC	TF binding site mE1_TFBS_bab1
3R	19649763	3R_19649763_INS [dm3] 3R_23824041_INS [dm6]	T	TGT	5.147e^-4	0.924	INTRON CG34355
X	5748141	X_5748141_SNP [dm3] X_5854108_SNP [dm6]	G	A	5.155e^-4	0.924	NON_SYNONYMOUS_CODING CG43136
2R	20504274	2R_20504274_SNP [dm3] 2R_24616751_SNP [dm6]	A	G	5.157e^-4	0.924	INTRON CG13594
X	8510529	X_8510529_SNP [dm3] X_8616496_SNP [dm6]	G	A	5.157e^-4	0.924	INTERGENIC
3L	13793279	3L_13793279_SNP [dm3] 3L_13800179_SNP [dm6]	G	A	5.161e^-4	0.924	INTRON bru-3
3R	17945440	3R_17945440_SNP [dm3] 3R_22119718_SNP [dm6]	A	G	5.161e^-4	0.924	UPSTREAM CG42390 & 1 other INTERGENIC
2R	6883084	2R_6883084_INS [dm3] 2R_10995579_INS [dm6]	G	GG	5.176e^-4	0.924	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14138084	2R_14138084_SNP [dm3] 2R_18250579_SNP [dm6]	A	G	5.181e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8578931	3L_8578931_SNP [dm3] 3L_8585831_SNP [dm6]	G	A	5.220e^-4	0.924	INTRON CG43078
3L	4376077	3L_4376077_SNP [dm3] 3L_4376077_SNP [dm6]	A	C	5.246e^-4	0.924	INTRON DopEcR
3L	4376078	3L_4376078_SNP [dm3] 3L_4376078_SNP [dm6]	A	T	5.246e^-4	0.924	INTRON DopEcR
3L	19144625	3L_19144625_SNP [dm3] 3L_19151525_SNP [dm6]	T	A	5.249e^-4	0.924	INTRON fz2
3L	9616658	3L_9616658_DEL [dm3] 3L_9623558_DEL [dm6]	AGGATCCAA	A	5.276e^-4	0.924	UTR_3_PRIME LanB2 UPSTREAM CG3335	TF binding site mE1_TFBS_sens
2L	10941054	2L_10941054_SNP [dm3] 2L_10941054_SNP [dm6]	C	T	5.281e^-4	0.924	INTRON dpr2
2L	3406765	2L_3406765_SNP [dm3] 2L_3406765_SNP [dm6]	A	G	5.281e^-4	0.924	SYNONYMOUS_CODING pgant2
2L	6708155	2L_6708155_SNP [dm3] 2L_6708155_SNP [dm6]	T	A	5.281e^-4	0.924	INTRON Tsp
2L	8325673	2L_8325673_SNP [dm3] 2L_8325673_SNP [dm6]	G	T	5.281e^-4	0.924	UPSTREAM CG7781 INTERGENIC
2L	8773742	2L_8773742_SNP [dm3] 2L_8773742_SNP [dm6]	A	G	5.281e^-4	0.924	SYNONYMOUS_CODING CG9466	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	2493118	2R_2493118_SNP [dm3] 2R_6605613_SNP [dm6]	T	A	5.281e^-4	0.924	INTRON jing	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	2509027	2R_2509027_INS [dm3] 2R_6621522_INS [dm6]	A	AGGCGTA	5.281e^-4	0.924	UTR_3_PRIME jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4269838	2R_4269838_SNP [dm3] 2R_8382333_SNP [dm6]	T	C	5.281e^-4	0.924	INTRON pdm3	TF binding site mE1_TFBS_HSA
2L	13114381	2L_13114381_INS [dm3] 2L_13114381_INS [dm6]	T	TT	5.284e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_Trl
X	16338819	X_16338819_SNP [dm3] X_16444786_SNP [dm6]	C	A	5.285e^-4	0.924	UTR_3_PRIME rngo DOWNSTREAM eIF-2alpha	TF binding site mE1_TFBS_cad
X	16343348	X_16343348_SNP [dm3] X_16449315_SNP [dm6]	T	A	5.285e^-4	0.924	UTR_5_PRIME Rbp2 INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16343387	X_16343387_SNP [dm3] X_16449354_SNP [dm6]	C	T	5.285e^-4	0.924	UTR_5_PRIME Rbp2 INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16343490	X_16343490_SNP [dm3] X_16449457_SNP [dm6]	G	A	5.285e^-4	0.924	UTR_5_PRIME Rbp2 INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3294603	X_3294603_SNP [dm3] X_3400570_SNP [dm6]	C	T	5.285e^-4	0.924	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_hb
X	3294604	X_3294604_SNP [dm3] X_3400571_SNP [dm6]	T	C	5.285e^-4	0.924	INTRON CR44999 & 1 other	TF binding site BDTNP1_TFBS_hb
X	8422394	X_8422394_SNP [dm3] X_8528361_SNP [dm6]	G	C	5.285e^-4	0.924	SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20379199	2L_20379199_SNP [dm3] 2L_20379199_SNP [dm6]	C	T	5.298e^-4	0.924	INTRON CG16798
X	5298042	X_5298042_SNP [dm3] X_5404009_SNP [dm6]	T	A	5.326e^-4	0.924	UTR_3_PRIME SK
X	5298044	X_5298044_SNP [dm3] X_5404011_SNP [dm6]	A	G	5.326e^-4	0.924	UTR_3_PRIME SK
2R	19863788	2R_19863788_DEL [dm3] 2R_23976265_DEL [dm6]	GTCTTCCTCG	G	5.327e^-4	0.924	CODON_DELETION Gadd34 DOWNSTREAM mr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15759532	3R_15759532_SNP [dm3] 3R_19933810_SNP [dm6]	A	G	5.327e^-4	0.924	SYNONYMOUS_CODING mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26494815	3R_26494815_SNP [dm3] 3R_30669093_SNP [dm6]	G	T	5.327e^-4	0.924	INTERGENIC
3R	26530754	3R_26530754_SNP [dm3] 3R_30705032_SNP [dm6]	A	G	5.327e^-4	0.924	UTR_3_PRIME CG31010	TF binding site mE1_TFBS_HSA
3R	26533301	3R_26533301_SNP [dm3] 3R_30707579_SNP [dm6]	G	A	5.327e^-4	0.924	INTERGENIC
X	19444879	X_19444879_INS [dm3] X_19550846_INS [dm6]	G	GTCCGTCCGTATA...	5.327e^-4	0.924	UPSTREAM mir-972 & 2 others INTERGENIC
X	19444883	X_19444883_DEL [dm3] X_19550850_DEL [dm6]	GAACTTT	A	5.327e^-4	0.924	UPSTREAM mir-972 & 2 others INTERGENIC
3L	3499304	3L_3499304_SNP [dm3] 3L_3499304_SNP [dm6]	C	T	5.331e^-4	0.924	INTRON CG42324
X	6778196	X_6778196_SNP [dm3] X_6884163_SNP [dm6]	C	T	5.331e^-4	0.924	INTERGENIC
X	6778259	X_6778259_DEL [dm3] X_6884226_DEL [dm6]	AATAACAAATA...	A	5.331e^-4	0.924	INTERGENIC
2R	11878071	2R_11878071_SNP [dm3] 2R_15990566_SNP [dm6]	T	C	5.332e^-4	0.924	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11878083	2R_11878083_SNP [dm3] 2R_15990578_SNP [dm6]	A	G	5.332e^-4	0.924	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11878095	2R_11878095_SNP [dm3] 2R_15990590_SNP [dm6]	G	T	5.332e^-4	0.924	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11878777	2R_11878777_SNP [dm3] 2R_15991272_SNP [dm6]	C	G	5.332e^-4	0.924	START_GAINED CG8314 UTR_5_PRIME CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	8670856	2R_8670856_SNP [dm3] 2R_12783351_SNP [dm6]	G	A	5.332e^-4	0.924	DOWNSTREAM CR45137 INTRON sca
3R	25430168	3R_25430168_SNP [dm3] 3R_29604446_SNP [dm6]	T	A	5.345e^-4	0.924	INTRON alph
X	16085660	X_16085660_SNP [dm3] X_16191627_SNP [dm6]	T	G	5.353e^-4	0.924	UPSTREAM mir-985 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18813725	3R_18813725_SNP [dm3] 3R_22988003_SNP [dm6]	T	C	5.387e^-4	0.924	SYNONYMOUS_CODING Or94a INTRON Nha2
3L	13797043	3L_13797043_SNP [dm3] 3L_13803943_SNP [dm6]	C	G	5.391e^-4	0.924	UPSTREAM bru-3 INTERGENIC
3L	8578653	3L_8578653_SNP [dm3] 3L_8585553_SNP [dm6]	T	C	5.391e^-4	0.924	UTR_5_PRIME CG43078 INTRON CG43078
3L	8578768	3L_8578768_SNP [dm3] 3L_8585668_SNP [dm6]	C	T	5.391e^-4	0.924	UTR_5_PRIME CG43078 INTRON CG43078
3L	8578868	3L_8578868_DEL [dm3] 3L_8585768_DEL [dm6]	CTTC	C	5.391e^-4	0.924	INTRON CG43078
2R	2432940	2R_2432940_INS [dm3] 2R_6545435_INS [dm6]	G	GGATTG	5.392e^-4	0.924	INTRON jing	TF binding site BDTNP1_TFBS_dl
2L	10563881	2L_10563881_SNP [dm3] 2L_10563881_SNP [dm6]	C	T	5.440e^-4	0.924	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18928306	3L_18928306_SNP [dm3] 3L_18935206_SNP [dm6]	C	T	5.467e^-4	0.924	INTRON CG32204
3L	19960422	3L_19960422_SNP [dm3] 3L_19967322_SNP [dm6]	G	C	5.467e^-4	0.924	INTRON Ac76E
3L	19960423	3L_19960423_SNP [dm3] 3L_19967323_SNP [dm6]	T	G	5.467e^-4	0.924	INTRON Ac76E
3L	14762689	3L_14762689_SNP [dm3] 3L_14769589_SNP [dm6]	T	A	5.472e^-4	0.924	UTR_3_PRIME mop UPSTREAM CG17173
3R	18705710	3R_18705710_SNP [dm3] 3R_22879988_SNP [dm6]	T	A	5.472e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23369746	3R_23369746_SNP [dm3] 3R_27544024_SNP [dm6]	A	G	5.472e^-4	0.924	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
3R	23369757	3R_23369757_SNP [dm3] 3R_27544035_SNP [dm6]	G	A	5.472e^-4	0.924	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
3R	23369781	3R_23369781_SNP [dm3] 3R_27544059_SNP [dm6]	G	A	5.472e^-4	0.924	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
3R	23369820	3R_23369820_SNP [dm3] 3R_27544098_SNP [dm6]	T	A	5.472e^-4	0.924	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
3R	25948953	3R_25948953_INS [dm3] 3R_30123231_INS [dm6]	T	TAATTAT	5.472e^-4	0.924	UTR_5_PRIME CG45072 DOWNSTREAM CG45073
3R	25954571	3R_25954571_SNP [dm3] 3R_30128849_SNP [dm6]	G	A	5.472e^-4	0.924	SYNONYMOUS_CODING Ppi1 UTR_5_PRIME Ppi1 DOWNSTREAM CG31029
X	6229028	X_6229028_SNP [dm3] X_6334995_SNP [dm6]	G	A	5.472e^-4	0.924	INTERGENIC
X	796455	X_796455_SNP [dm3] X_902422_SNP [dm6]	T	A	5.472e^-4	0.924	INTRON CG43867	TF binding site BDTNP1_TFBS_z
3L	12295127	3L_12295127_SNP [dm3] 3L_12302027_SNP [dm6]	G	T	5.491e^-4	0.924	DOWNSTREAM CR44551 & 1 other INTERGENIC
2R	20503333	2R_20503333_SNP [dm3] 2R_24615810_SNP [dm6]	G	T	5.518e^-4	0.924	UTR_3_PRIME CG13594 UPSTREAM CG4741
2L	6597580	2L_6597580_SNP [dm3] 2L_6597580_SNP [dm6]	G	T	5.519e^-4	0.924	INTRON CG11319
2R	9970621	2R_9970621_SNP [dm3] 2R_14083116_SNP [dm6]	A	G	5.553e^-4	0.924	INTRON Prosap
2L	22138615	2L_22138615_SNP [dm3] 2L_22138615_SNP [dm6]	G	A	5.583e^-4	0.924	INTRON CG42748	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6255359	2R_6255359_DEL [dm3] 2R_10367854_DEL [dm6]	TA	T	5.594e^-4	0.924	INTRON CG42732
3L	13244074	3L_13244074_SNP [dm3] 3L_13250974_SNP [dm6]	C	G	5.601e^-4	0.924	INTRON caps
3L	10722356	3L_10722356_SNP [dm3] 3L_10729256_SNP [dm6]	T	A	5.619e^-4	0.924	INTERGENIC
3L	10722384	3L_10722384_SNP [dm3] 3L_10729284_SNP [dm6]	A	T	5.619e^-4	0.924	INTERGENIC
3L	10722398	3L_10722398_SNP [dm3] 3L_10729298_SNP [dm6]	C	A	5.619e^-4	0.924	INTERGENIC
2R	6255402	2R_6255402_DEL [dm3] 2R_10367897_DEL [dm6]	ACCGCACGGGGGTCCATGCC...	A	5.683e^-4	0.924	INTRON CG42732
3L	12295177	3L_12295177_DEL [dm3] 3L_12302077_DEL [dm6]	TATTA	T	5.714e^-4	0.924	DOWNSTREAM CR44551 & 1 other INTERGENIC
3R	15452562	3R_15452562_SNP [dm3] 3R_19626840_SNP [dm6]	T	A	5.744e^-4	0.924	INTRON CG6231
2L	8468346	2L_8468346_SNP [dm3] 2L_8468346_SNP [dm6]	C	A	5.763e^-4	0.924	INTRON d	TF binding site mE1_TFBS_Kr
2L	8468443	2L_8468443_SNP [dm3] 2L_8468443_SNP [dm6]	G	A	5.763e^-4	0.924	INTRON d
2L	8468493	2L_8468493_SNP [dm3] 2L_8468493_SNP [dm6]	A	C	5.763e^-4	0.924	INTRON d
2R	11889190	2R_11889190_SNP [dm3] 2R_16001685_SNP [dm6]	A	T	5.763e^-4	0.924	UTR_5_PRIME CG8370 UPSTREAM CG8370 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6336249	2R_6336249_SNP [dm3] 2R_10448744_SNP [dm6]	G	A	5.763e^-4	0.924	DOWNSTREAM Cyp49a1 INTRON Galphao
3L	17819406	3L_17819406_SNP [dm3] 3L_17826306_SNP [dm6]	G	C	5.763e^-4	0.924	INTRON Grd
3L	17820437	3L_17820437_SNP [dm3] 3L_17827337_SNP [dm6]	A	T	5.763e^-4	0.924	INTRON Grd
3L	2493139	3L_2493139_SNP [dm3] 3L_2493139_SNP [dm6]	T	A	5.763e^-4	0.924	DOWNSTREAM CG1146 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2493141	3L_2493141_SNP [dm3] 3L_2493141_SNP [dm6]	T	C	5.763e^-4	0.924	DOWNSTREAM CG1146 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18043572	X_18043572_SNP [dm3] X_18149539_SNP [dm6]	T	C	5.763e^-4	0.924	INTERGENIC
X	18043745	X_18043745_SNP [dm3] X_18149712_SNP [dm6]	A	G	5.763e^-4	0.924	INTERGENIC
X	18046234	X_18046234_SNP [dm3] X_18152201_SNP [dm6]	G	T	5.763e^-4	0.924	INTERGENIC
3R	18092007	3R_18092007_SNP [dm3] 3R_22266285_SNP [dm6]	A	C	5.876e^-4	0.924	INTRON SKIP
3R	21000188	3R_21000188_SNP [dm3] 3R_25174466_SNP [dm6]	T	C	5.876e^-4	0.924	INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	7903021	2R_7903021_SNP [dm3] 2R_12015516_SNP [dm6]	T	C	5.971e^-4	0.924	INTRON otk EXON CR44306	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18698494	2R_18698494_SNP [dm3] 2R_22810989_SNP [dm6]	G	A	5.989e^-4	0.924	INTRON stl
3R	5285750	3R_5285750_SNP [dm3] 3R_9460028_SNP [dm6]	A	C	6.009e^-4	0.924	UPSTREAM GstZ2 INTRON GstZ2
3L	3785118	3L_3785118_SNP [dm3] 3L_3785118_SNP [dm6]	G	A	6.023e^-4	0.924	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
X	17506517	X_17506517_SNP [dm3] X_17612484_SNP [dm6]	T	A	6.023e^-4	0.924	INTERGENIC
X	17506524	X_17506524_SNP [dm3] X_17612491_SNP [dm6]	A	T	6.023e^-4	0.924	INTERGENIC
3R	20990548	3R_20990548_SNP [dm3] 3R_25164826_SNP [dm6]	G	C	6.026e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8804082	3R_8804082_SNP [dm3] 3R_12978360_SNP [dm6]	C	G	6.030e^-4	0.924	SYNONYMOUS_CODING CG7091 UPSTREAM CG7381	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16232919	3L_16232919_SNP [dm3] 3L_16239819_SNP [dm6]	C	A	6.036e^-4	0.924	DOWNSTREAM l_3_72Dr INTERGENIC
2L	13464112	2L_13464112_SNP [dm3] 2L_13464112_SNP [dm6]	A	T	6.055e^-4	0.924	INTRON CG42784
3R	24024026	3R_24024026_SNP [dm3] 3R_28198304_SNP [dm6]	G	A	6.088e^-4	0.924	INTRON CG34354
3L	14252221	3L_14252221_SNP [dm3] 3L_14259121_SNP [dm6]	C	A	6.110e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15903556	X_15903556_SNP [dm3] X_16009523_SNP [dm6]	C	G	6.134e^-4	0.924	NON_SYNONYMOUS_CODING Muc14A DOWNSTREAM CG12698
3R	8820836	3R_8820836_SNP [dm3] 3R_12995114_SNP [dm6]	T	G	6.198e^-4	0.924	UTR_5_PRIME yellow-f2 UPSTREAM CG7488	TF binding site BDTNP1_TFBS_Med
3R	8820839	3R_8820839_SNP [dm3] 3R_12995117_SNP [dm6]	C	T	6.198e^-4	0.924	UTR_5_PRIME yellow-f2 UPSTREAM CG7488	TF binding site BDTNP1_TFBS_Med
2L	19549168	2L_19549168_INS [dm3] 2L_19549168_INS [dm6]	T	TCAATATGATAGATGTTTAG...	6.320e^-4	0.924	UPSTREAM Tep4 INTRON Tep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	5736946	3L_5736946_DEL [dm3] 3L_5743846_DEL [dm6]	TACAT	T	6.357e^-4	0.924	UTR_3_PRIME sif INTRON sif
3L	7999741	3L_7999741_INS [dm3] 3L_8006641_INS [dm6]	G	GG	6.369e^-4	0.924	INTRON nmo
3R	13760981	3R_13760981_SNP [dm3] 3R_17935259_SNP [dm6]	T	G	6.378e^-4	0.924	INTRON cpo
3R	20229039	3R_20229039_SNP [dm3] 3R_24403317_SNP [dm6]	G	A	6.378e^-4	0.924	SYNONYMOUS_CODING nAChRalpha1
2L	12805924	2L_12805924_INS [dm3] 2L_12805924_INS [dm6]	T	TT	6.409e^-4	0.924	INTERGENIC
3L	4381324	3L_4381324_SNP [dm3] 3L_4381324_SNP [dm6]	A	G	6.415e^-4	0.924	SYNONYMOUS_CODING CG32240 UPSTREAM DopEcR
3L	4381331	3L_4381331_SNP [dm3] 3L_4381331_SNP [dm6]	T	C	6.415e^-4	0.924	SPLICE_SITE_REGION CG32240 UPSTREAM DopEcR INTRON CG32240
3L	4381333	3L_4381333_SNP [dm3] 3L_4381333_SNP [dm6]	T	A	6.415e^-4	0.924	SPLICE_SITE_REGION CG32240 UPSTREAM DopEcR INTRON CG32240
3L	4381339	3L_4381339_SNP [dm3] 3L_4381339_SNP [dm6]	A	G	6.415e^-4	0.924	UPSTREAM DopEcR INTRON CG32240
3L	1291395	3L_1291395_SNP [dm3] 3L_1291395_SNP [dm6]	C	T	6.427e^-4	0.924	SYNONYMOUS_CODING CG32333	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22750306	3R_22750306_SNP [dm3] 3R_26924584_SNP [dm6]	A	G	6.433e^-4	0.924	INTRON sda
3L	8247065	3L_8247065_DEL [dm3] 3L_8253965_DEL [dm6]	AA	A	6.433e^-4	0.924	INTRON Dscam4
3L	7988198	3L_7988198_SNP [dm3] 3L_7995098_SNP [dm6]	C	T	6.448e^-4	0.924	INTRON nmo	TF binding site mE1_TFBS_cad
3L	10473503	3L_10473503_SNP [dm3] 3L_10480403_SNP [dm6]	G	T	6.457e^-4	0.924	INTERGENIC
3L	6970128	3L_6970128_SNP [dm3] 3L_6977028_SNP [dm6]	T	G	6.457e^-4	0.924	INTRON Galphai & 1 other	TF binding site BDTNP1_TFBS_dl
3R	4717970	3R_4717970_SNP [dm3] 3R_8892248_SNP [dm6]	G	C	6.461e^-4	0.924	INTRON pyd
2L	18252770	2L_18252770_SNP [dm3] 2L_18252770_SNP [dm6]	T	C	6.477e^-4	0.924	DOWNSTREAM CG43406 INTRON CG42750
2R	6946042	2R_6946042_SNP [dm3] 2R_11058537_SNP [dm6]	C	G	6.509e^-4	0.924	INTRON luna
2R	15392623	2R_15392623_SNP [dm3] 2R_19505118_SNP [dm6]	C	A	6.539e^-4	0.924	UPSTREAM CR44472 DOWNSTREAM CG11007 EXON CR44472	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11452493	3L_11452493_SNP [dm3] 3L_11459393_SNP [dm6]	T	C	6.541e^-4	0.924	SYNONYMOUS_CODING CG7551 UPSTREAM CG12289	TF binding site mE1_TFBS_inv
3L	10741682	3L_10741682_SNP [dm3] 3L_10748582_SNP [dm6]	C	T	6.595e^-4	0.924	INTERGENIC
2R	16641316	2R_16641316_SNP [dm3] 2R_20753811_SNP [dm6]	A	C	6.674e^-4	0.924	DOWNSTREAM CG34202 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16963066	2R_16963066_SNP [dm3] 2R_21075561_SNP [dm6]	T	G	6.674e^-4	0.924	UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4267708	2R_4267708_SNP [dm3] 2R_8380203_SNP [dm6]	T	C	6.674e^-4	0.924	INTRON pdm3	TF binding site BDTNP1_TFBS_dl
3L	5520284	3L_5520284_SNP [dm3] 3L_5527184_SNP [dm6]	A	G	6.674e^-4	0.924	INTRON Lkr
3L	5520545	3L_5520545_SNP [dm3] 3L_5527445_SNP [dm6]	C	A	6.674e^-4	0.924	INTRON Lkr
3L	5520557	3L_5520557_DEL [dm3] 3L_5527457_DEL [dm6]	GTAGC	G	6.674e^-4	0.924	INTRON Lkr
3L	5520594	3L_5520594_SNP [dm3] 3L_5527494_SNP [dm6]	C	T	6.674e^-4	0.924	INTRON Lkr
3L	5520605	3L_5520605_SNP [dm3] 3L_5527505_SNP [dm6]	G	T	6.674e^-4	0.924	INTRON Lkr
X	17114257	X_17114257_SNP [dm3] X_17220224_SNP [dm6]	T	G	6.674e^-4	0.924	DOWNSTREAM CG12998 INTERGENIC
X	831884	X_831884_DEL [dm3] X_937851_DEL [dm6]	CCTT	C	6.705e^-4	0.924	DOWNSTREAM TRAM INTRON CG32815
X	836929	X_836929_SNP [dm3] X_942896_SNP [dm6]	A	G	6.705e^-4	0.924	UTR_3_PRIME mus81 INTRON CG3703
X	841762	X_841762_SNP [dm3] X_947729_SNP [dm6]	C	A	6.705e^-4	0.924	UPSTREAM CG3699 DOWNSTREAM CG3690 INTERGENIC
X	850733	X_850733_SNP [dm3] X_956700_SNP [dm6]	A	T	6.705e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11135727	2R_11135727_SNP [dm3] 2R_15248222_SNP [dm6]	A	G	6.720e^-4	0.924	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11542405	3L_11542405_SNP [dm3] 3L_11549305_SNP [dm6]	A	G	6.732e^-4	0.924	INTRON Mob2
3L	3878936	3L_3878936_SNP [dm3] 3L_3878936_SNP [dm6]	A	G	6.732e^-4	0.924	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	3879392	3L_3879392_SNP [dm3] 3L_3879392_SNP [dm6]	G	A	6.732e^-4	0.924	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	6360658	X_6360658_SNP [dm3] X_6466625_SNP [dm6]	G	T	6.732e^-4	0.924	UTR_3_PRIME CG42340 INTRON CG42340
X	6360792	X_6360792_SNP [dm3] X_6466759_SNP [dm6]	G	A	6.732e^-4	0.924	UTR_3_PRIME CG42340 INTRON CG42340	TF binding site BDTNP1_TFBS_sna
3R	13018450	3R_13018450_SNP [dm3] 3R_17192728_SNP [dm6]	T	C	6.742e^-4	0.924	INTRON Mur89F
3R	13018499	3R_13018499_SNP [dm3] 3R_17192777_SNP [dm6]	T	A	6.742e^-4	0.924	INTRON Mur89F
3R	13018514	3R_13018514_SNP [dm3] 3R_17192792_SNP [dm6]	T	G	6.742e^-4	0.924	INTRON Mur89F	TF binding site mE1_TFBS_chinmo
3R	16112036	3R_16112036_SNP [dm3] 3R_20286314_SNP [dm6]	T	A	6.742e^-4	0.924	INTRON cic	TF binding site BDTNP1_TFBS_dl
3R	25026114	3R_25026114_DEL [dm3] 3R_29200392_DEL [dm6]	CTCTGTGCCCGCCT...	C	6.742e^-4	0.924	UPSTREAM CG11899 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8510988	2R_8510988_SNP [dm3] 2R_12623483_SNP [dm6]	A	C	6.746e^-4	0.924	UPSTREAM CG30054 DOWNSTREAM Galphaq INTERGENIC
2L	13980832	2L_13980832_SNP [dm3] 2L_13980832_SNP [dm6]	G	A	6.752e^-4	0.924	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
X	16836099	X_16836099_SNP [dm3] X_16942066_SNP [dm6]	A	T	6.770e^-4	0.924	NON_SYNONYMOUS_CODING CG13001	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11501001	2R_11501001_SNP [dm3] 2R_15613496_SNP [dm6]	T	A	6.772e^-4	0.924	UPSTREAM CG42524 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	22309796	3L_22309796_SNP [dm3] 3L_22316696_SNP [dm6]	G	C	6.821e^-4	0.924	INTRON Ten-m
3L	22311794	3L_22311794_SNP [dm3] 3L_22318694_SNP [dm6]	C	T	6.821e^-4	0.924	INTRON Ten-m	TF binding site mE1_TFBS_inv
3L	22313286	3L_22313286_SNP [dm3] 3L_22320186_SNP [dm6]	A	G	6.821e^-4	0.924	INTRON Ten-m
3L	22314782	3L_22314782_SNP [dm3] 3L_22321682_SNP [dm6]	G	T	6.821e^-4	0.924	INTRON Ten-m
3L	22317841	3L_22317841_SNP [dm3] 3L_22324741_SNP [dm6]	A	G	6.821e^-4	0.924	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1172473	3R_1172473_SNP [dm3] 3R_5346751_SNP [dm6]	C	T	6.821e^-4	0.924	INTRON mtd
3R	1172498	3R_1172498_SNP [dm3] 3R_5346776_SNP [dm6]	C	G	6.821e^-4	0.924	INTRON mtd
3R	2570986	3R_2570986_SNP [dm3] 3R_6745264_SNP [dm6]	G	A	6.838e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3L	13582688	3L_13582688_SNP [dm3] 3L_13589588_SNP [dm6]	C	G	6.848e^-4	0.924	INTRON bru-3
2R	8839591	2R_8839591_INS [dm3] 2R_12952086_INS [dm6]	A	AA	6.859e^-4	0.924	INTRON CG44251 & 1 other
3R	25923342	3R_25923342_SNP [dm3] 3R_30097620_SNP [dm6]	A	C	6.859e^-4	0.924	INTRON sima	TF binding site mE1_TFBS_cnc
2L	18291582	2L_18291582_DEL [dm3] 2L_18291582_DEL [dm6]	GCGCTGCAAGAATGAGAGCA...	G	6.899e^-4	0.924	UPSTREAM CR44693 & 3 others INTERGENIC
3R	21788813	3R_21788813_SNP [dm3] 3R_25963091_SNP [dm6]	T	C	6.920e^-4	0.924	INTRON boss
3R	22676687	3R_22676687_INS [dm3] 3R_26850965_INS [dm6]	A	AA	6.920e^-4	0.924	INTRON Lerp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7929761	2R_7929761_SNP [dm3] 2R_12042256_SNP [dm6]	T	C	6.924e^-4	0.924	SYNONYMOUS_CODING RpIII128
2R	2969124	2R_2969124_SNP [dm3] 2R_7081619_SNP [dm6]	A	G	6.932e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19350360	X_19350360_SNP [dm3] X_19456327_SNP [dm6]	G	C	6.936e^-4	0.924	INTRON kek5
2L	18355706	2L_18355706_SNP [dm3] 2L_18355706_SNP [dm6]	G	A	6.951e^-4	0.924	DOWNSTREAM Acp36DE INTRON Fas3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27854472	3R_27854472_SNP [dm3] 3R_32028750_SNP [dm6]	T	C	7.014e^-4	0.924	INTERGENIC
3L	6839594	3L_6839594_SNP [dm3] 3L_6846494_SNP [dm6]	C	T	7.025e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	14272289	3L_14272289_INS [dm3] 3L_14279189_INS [dm6]	A	AA	7.044e^-4	0.924	INTRON fz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6258189	2R_6258189_INS [dm3] 2R_10370684_INS [dm6]	G	AA	7.088e^-4	0.924	INTRON CG42732
2L	11549448	2L_11549448_SNP [dm3] 2L_11549448_SNP [dm6]	G	A	7.122e^-4	0.924	INTRON CR44494
2L	1430801	2L_1430801_SNP [dm3] 2L_1430801_SNP [dm6]	T	C	7.122e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1473606	2L_1473606_SNP [dm3] 2L_1473606_SNP [dm6]	A	C	7.122e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4726550	2L_4726550_SNP [dm3] 2L_4726550_SNP [dm6]	T	A	7.122e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	8585220	2L_8585220_SNP [dm3] 2L_8585220_SNP [dm6]	T	A	7.122e^-4	0.924	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8585224	2L_8585224_SNP [dm3] 2L_8585224_SNP [dm6]	T	A	7.122e^-4	0.924	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8585226	2L_8585226_DEL [dm3] 2L_8585226_DEL [dm6]	TT	T	7.122e^-4	0.924	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8585229	2L_8585229_SNP [dm3] 2L_8585229_SNP [dm6]	C	T	7.122e^-4	0.924	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8585231	2L_8585231_INS [dm3] 2L_8585231_INS [dm6]	T	TGA	7.122e^-4	0.924	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13464098	2L_13464098_SNP [dm3] 2L_13464098_SNP [dm6]	A	T	7.164e^-4	0.924	INTRON CG42784
3L	9951577	3L_9951577_SNP [dm3] 3L_9958477_SNP [dm6]	A	T	7.216e^-4	0.924	INTRON CG34356
3L	9951600	3L_9951600_SNP [dm3] 3L_9958500_SNP [dm6]	C	T	7.216e^-4	0.924	INTRON CG34356
3L	15806299	3L_15806299_SNP [dm3] 3L_15813199_SNP [dm6]	C	T	7.225e^-4	0.924	INTRON fwe
X	762604	X_762604_DEL [dm3] X_868571_DEL [dm6]	AGA	A	7.234e^-4	0.924	INTRON CG43867
3R	18886414	3R_18886414_SNP [dm3] 3R_23060692_SNP [dm6]	T	G	7.244e^-4	0.924	SYNONYMOUS_CODING sav UPSTREAM Ublcp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8433077	2R_8433077_SNP [dm3] 2R_12545572_SNP [dm6]	T	C	7.270e^-4	0.924	UPSTREAM CG33752 INTRON fra	TF binding site BDTNP1_TFBS_twi
2R	8433097	2R_8433097_SNP [dm3] 2R_12545592_SNP [dm6]	A	G	7.270e^-4	0.924	UPSTREAM CG33752 INTRON fra
3L	13336209	3L_13336209_SNP [dm3] 3L_13343109_SNP [dm6]	A	C	7.280e^-4	0.924	DOWNSTREAM CR44559 INTERGENIC
2R	18184856	2R_18184856_SNP [dm3] 2R_22297351_SNP [dm6]	A	G	7.300e^-4	0.924	DOWNSTREAM CG5819 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	8715892	2R_8715892_SNP [dm3] 2R_12828387_SNP [dm6]	T	C	7.312e^-4	0.924	INTERGENIC
X	6559328	X_6559328_DEL [dm3] X_6665295_DEL [dm6]	CGCGGGTCAC	C	7.324e^-4	0.924	CODON_DELETION Ctr1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16354638	X_16354638_SNP [dm3] X_16460605_SNP [dm6]	C	A	7.341e^-4	0.924	UTR_3_PRIME para	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23369659	3R_23369659_SNP [dm3] 3R_27543937_SNP [dm6]	C	G	7.354e^-4	0.924	UPSTREAM Gr98c DOWNSTREAM Gr98b INTERGENIC
3R	15073496	3R_15073496_SNP [dm3] 3R_19247774_SNP [dm6]	A	T	7.370e^-4	0.924	INTRON CG5217
2R	14589903	2R_14589903_SNP [dm3] 2R_18702398_SNP [dm6]	A	T	7.383e^-4	0.924	DOWNSTREAM Sik3 INTRON Sik3
2R	4657959	2R_4657959_SNP [dm3] 2R_8770454_SNP [dm6]	A	G	7.383e^-4	0.924	INTERGENIC
3L	2670388	3L_2670388_SNP [dm3] 3L_2670388_SNP [dm6]	T	C	7.383e^-4	0.924	DOWNSTREAM Fife INTRON Fife
X	16895120	X_16895120_SNP [dm3] X_17001087_SNP [dm6]	T	C	7.383e^-4	0.924	INTRON CG45002
2R	19834952	2R_19834952_SNP [dm3] 2R_23947429_SNP [dm6]	T	C	7.386e^-4	0.924	DOWNSTREAM CG13565 & 1 other INTRON CG13565
2L	13906724	2L_13906724_SNP [dm3] 2L_13906724_SNP [dm6]	T	C	7.391e^-4	0.924	SYNONYMOUS_CODING Ance	TF binding site mE1_TFBS_cad
2L	20925794	2L_20925794_SNP [dm3] 2L_20925794_SNP [dm6]	C	T	7.391e^-4	0.924	SYNONYMOUS_CODING RPA2 DOWNSTREAM CG9272	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	19080928	3R_19080928_SNP [dm3] 3R_23255206_SNP [dm6]	C	A	7.391e^-4	0.924	UTR_3_PRIME wda DOWNSTREAM EloA
3L	12880463	3L_12880463_SNP [dm3] 3L_12887363_SNP [dm6]	A	G	7.413e^-4	0.924	NON_SYNONYMOUS_CODING CG14120
3L	12880685	3L_12880685_SNP [dm3] 3L_12887585_SNP [dm6]	A	G	7.413e^-4	0.924	NON_SYNONYMOUS_CODING CG14120
3L	16429749	3L_16429749_SNP [dm3] 3L_16436649_SNP [dm6]	C	T	7.413e^-4	0.924	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_inv
3L	16429751	3L_16429751_SNP [dm3] 3L_16436651_SNP [dm6]	A	G	7.413e^-4	0.924	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16429752	3L_16429752_SNP [dm3] 3L_16436652_SNP [dm6]	A	C	7.413e^-4	0.924	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18167084	3L_18167084_SNP [dm3] 3L_18173984_SNP [dm6]	G	C	7.413e^-4	0.924	INTRON W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10822228	3L_10822228_SNP [dm3] 3L_10829128_SNP [dm6]	C	T	7.422e^-4	0.924	INTERGENIC
3L	18133985	3L_18133985_SNP [dm3] 3L_18140885_SNP [dm6]	T	C	7.426e^-4	0.924	INTRON gk
3R	17874209	3R_17874209_SNP [dm3] 3R_22048487_SNP [dm6]	G	A	7.486e^-4	0.924	INTRON how	TF binding site BDTNP1_TFBS_twi
X	18547548	X_18547548_SNP [dm3] X_18653515_SNP [dm6]	T	C	7.541e^-4	0.924	UTR_3_PRIME CG6659 UPSTREAM Ing3	TF binding site BDTNP1_TFBS_dl
2R	5564501	2R_5564501_SNP [dm3] 2R_9676996_SNP [dm6]	A	G	7.573e^-4	0.924	INTRON Mmp2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10808400	3L_10808400_SNP [dm3] 3L_10815300_SNP [dm6]	G	A	7.573e^-4	0.924	NON_SYNONYMOUS_CODING CG42831
3L	11117697	3L_11117697_SNP [dm3] 3L_11124597_SNP [dm6]	C	T	7.573e^-4	0.924	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16279356	3L_16279356_SNP [dm3] 3L_16286256_SNP [dm6]	C	T	7.573e^-4	0.924	UPSTREAM CG13047 INTERGENIC
3L	17215173	3L_17215173_SNP [dm3] 3L_17222073_SNP [dm6]	C	T	7.573e^-4	0.924	INTRON Rbp6
3L	17215803	3L_17215803_SNP [dm3] 3L_17222703_SNP [dm6]	T	A	7.573e^-4	0.924	INTRON Rbp6
3L	1816920	3L_1816920_SNP [dm3] 3L_1816920_SNP [dm6]	C	T	7.573e^-4	0.924	INTRON GV1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5268743	3L_5268743_SNP [dm3] 3L_5275643_SNP [dm6]	T	C	7.573e^-4	0.924	INTRON shep	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6200327	3L_6200327_SNP [dm3] 3L_6207227_SNP [dm6]	A	T	7.573e^-4	0.924	SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7847698	3L_7847698_SNP [dm3] 3L_7854598_SNP [dm6]	T	A	7.573e^-4	0.924	UTR_5_PRIME Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15235128	3R_15235128_SNP [dm3] 3R_19409406_SNP [dm6]	T	A	7.573e^-4	0.924	INTRON CG11626
3R	15235197	3R_15235197_SNP [dm3] 3R_19409475_SNP [dm6]	G	A	7.573e^-4	0.924	SYNONYMOUS_CODING CG11626
3R	15236277	3R_15236277_SNP [dm3] 3R_19410555_SNP [dm6]	T	C	7.573e^-4	0.924	SYNONYMOUS_CODING CG11626
X	2528712	X_2528712_SNP [dm3] X_2634679_SNP [dm6]	C	T	7.573e^-4	0.924	INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	1085932	3L_1085932_SNP [dm3] 3L_1085932_SNP [dm6]	G	C	7.575e^-4	0.924	INTRON bab1
3R	12968433	3R_12968433_INS [dm3] 3R_17142711_INS [dm6]	A	AGCAGTTA	7.575e^-4	0.924	UPSTREAM TwdlW INTERGENIC
3R	12968434	3R_12968434_DEL [dm3] 3R_17142712_DEL [dm6]	ACATTTGCCT	A	7.575e^-4	0.924	UPSTREAM TwdlW INTERGENIC
3R	12968463	3R_12968463_SNP [dm3] 3R_17142741_SNP [dm6]	A	G	7.575e^-4	0.924	UPSTREAM TwdlW INTERGENIC
3R	17520291	3R_17520291_DEL [dm3] 3R_21694569_DEL [dm6]	CAAAAAAGCGCAAAAAAG...	C	7.575e^-4	0.924	INTRON CG31176
3R	17520310	3R_17520310_SNP [dm3] 3R_21694588_SNP [dm6]	G	T	7.575e^-4	0.924	INTRON CG31176
3R	20309139	3R_20309139_SNP [dm3] 3R_24483417_SNP [dm6]	T	C	7.575e^-4	0.924	INTERGENIC
3L	15855601	3L_15855601_DEL [dm3] 3L_15862501_DEL [dm6]	TGT	T	7.621e^-4	0.924	DOWNSTREAM pHCl INTRON pHCl
3R	18958473	3R_18958473_SNP [dm3] 3R_23132751_SNP [dm6]	A	T	7.635e^-4	0.924	INTRON hh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22610488	3R_22610488_SNP [dm3] 3R_26784766_SNP [dm6]	C	A	7.635e^-4	0.924	SYNONYMOUS_CODING CG42790 UTR_3_PRIME CG42790 UPSTREAM CG42789
3R	25531971	3R_25531971_SNP [dm3] 3R_29706249_SNP [dm6]	C	G	7.635e^-4	0.924	INTERGENIC
3L	19120163	3L_19120163_SNP [dm3] 3L_19127063_SNP [dm6]	T	C	7.651e^-4	0.924	INTRON CG14082
X	3250272	X_3250272_MNP [dm3] X_3356239_MNP [dm6]	AGA	TAG	7.669e^-4	0.924	INTERGENIC
2R	11916966	2R_11916966_SNP [dm3] 2R_16029461_SNP [dm6]	C	A	7.673e^-4	0.924	INTRON CG8401
3L	6438757	3L_6438757_SNP [dm3] 3L_6445657_SNP [dm6]	G	T	7.683e^-4	0.924	INTRON CG42747
2R	19810693	2R_19810693_SNP [dm3] 2R_23923170_SNP [dm6]	T	G	7.748e^-4	0.924	INTRON kcc	TF binding site mE1_TFBS_cad
2R	13517534	2R_13517534_SNP [dm3] 2R_17630029_SNP [dm6]	A	G	7.751e^-4	0.924	INTRON CG10936 & 1 other
3R	13000575	3R_13000575_SNP [dm3] 3R_17174853_SNP [dm6]	T	A	7.751e^-4	0.924	INTRON Mur89F
3R	17224541	3R_17224541_SNP [dm3] 3R_21398819_SNP [dm6]	A	G	7.751e^-4	0.924	SYNONYMOUS_CODING CG6475	TF binding site mE1_TFBS_sens
3L	5520635	3L_5520635_SNP [dm3] 3L_5527535_SNP [dm6]	G	A	7.757e^-4	0.924	INTRON Lkr
2L	5611135	2L_5611135_SNP [dm3] 2L_5611135_SNP [dm6]	T	C	7.762e^-4	0.924	INTRON CG14010
3R	2704349	3R_2704349_SNP [dm3] 3R_6878627_SNP [dm6]	A	C	7.813e^-4	0.924	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	2704353	3R_2704353_SNP [dm3] 3R_6878631_SNP [dm6]	T	C	7.813e^-4	0.924	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	5558569	3R_5558569_SNP [dm3] 3R_9732847_SNP [dm6]	T	A	7.813e^-4	0.924	INTRON alphaTub85E	TF binding site mE1_TFBS_cad
2R	17724153	2R_17724153_SNP [dm3] 2R_21836648_SNP [dm6]	C	A	7.820e^-4	0.924	UPSTREAM CG4377 DOWNSTREAM CG4372 INTERGENIC
3L	6193915	3L_6193915_SNP [dm3] 3L_6200815_SNP [dm6]	A	G	7.900e^-4	0.924	SYNONYMOUS_CODING CG8219 DOWNSTREAM Trn	TF binding site mE1_TFBS_cad
X	6360718	X_6360718_SNP [dm3] X_6466685_SNP [dm6]	T	A	7.902e^-4	0.924	UTR_3_PRIME CG42340 INTRON CG42340	TF binding site BDTNP1_TFBS_sna
2L	19583437	2L_19583437_SNP [dm3] 2L_19583437_SNP [dm6]	G	C	7.914e^-4	0.924	SYNONYMOUS_CODING CG10262 UPSTREAM Hakai & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	20385010	2L_20385010_SNP [dm3] 2L_20385010_SNP [dm6]	C	A	7.914e^-4	0.924	DOWNSTREAM CG10947 INTERGENIC
2R	9430488	2R_9430488_SNP [dm3] 2R_13542983_SNP [dm6]	A	C	7.914e^-4	0.924	INTRON CG6145
3L	14036751	3L_14036751_SNP [dm3] 3L_14043651_SNP [dm6]	T	C	7.940e^-4	0.924	UTR_3_PRIME Hsc70Cb DOWNSTREAM blue & 1 other	TF binding site mE1_TFBS_cad
X	5705341	X_5705341_DEL [dm3] X_5811308_DEL [dm6]	TT	T	7.940e^-4	0.924	DOWNSTREAM CR45529 & 1 other INTERGENIC
3R	10197401	3R_10197401_SNP [dm3] 3R_14371679_SNP [dm6]	T	A	7.940e^-4	0.924	INTRON NK7.1 EXON snoRNA:Me18S-G1189
3L	5407666	3L_5407666_INS [dm3] 3L_5414566_INS [dm6]	G	GG	7.948e^-4	0.924	INTERGENIC
3R	5285542	3R_5285542_SNP [dm3] 3R_9459820_SNP [dm6]	A	G	7.959e^-4	0.924	UPSTREAM GstZ2 INTRON GstZ2	regulatory region REDfly_CRMs
3R	6939265	3R_6939265_SNP [dm3] 3R_11113543_SNP [dm6]	C	A	7.967e^-4	0.924	INTERGENIC
3R	6944515	3R_6944515_SNP [dm3] 3R_11118793_SNP [dm6]	C	G	7.967e^-4	0.924	INTERGENIC
3R	6944540	3R_6944540_SNP [dm3] 3R_11118818_SNP [dm6]	T	C	7.967e^-4	0.924	INTERGENIC
3R	26976673	3R_26976673_SNP [dm3] 3R_31150951_SNP [dm6]	A	C	8.021e^-4	0.924	INTRON Gycbeta100B
X	17568995	X_17568995_INS [dm3] X_17674962_INS [dm6]	A	ATA	8.021e^-4	0.924	INTRON chas
3L	2369846	3L_2369846_SNP [dm3] 3L_2369846_SNP [dm6]	T	G	8.026e^-4	0.924	NON_SYNONYMOUS_CODING CG1317	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7963174	2L_7963174_SNP [dm3] 2L_7963174_SNP [dm6]	A	G	8.045e^-4	0.924	INTRON Snoo
X	16341629	X_16341629_SNP [dm3] X_16447596_SNP [dm6]	T	G	8.056e^-4	0.924	UTR_3_PRIME CG34015 UPSTREAM eIF-2alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18095603	3R_18095603_SNP [dm3] 3R_22269881_SNP [dm6]	C	G	8.059e^-4	0.924	INTRON SKIP
3R	18095624	3R_18095624_SNP [dm3] 3R_22269902_SNP [dm6]	C	T	8.059e^-4	0.924	INTRON SKIP
3R	19652453	3R_19652453_SNP [dm3] 3R_23826731_SNP [dm6]	T	C	8.059e^-4	0.924	UPSTREAM CR43285 DOWNSTREAM snRNA:U1:95Cc INTRON CG34355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20067335	3R_20067335_SNP [dm3] 3R_24241613_SNP [dm6]	T	A	8.059e^-4	0.924	INTRON mask	TF binding site mE1_TFBS_cad
3R	22064702	3R_22064702_SNP [dm3] 3R_26238980_SNP [dm6]	A	T	8.059e^-4	0.924	INTRON CR42745
3R	22916212	3R_22916212_SNP [dm3] 3R_27090490_SNP [dm6]	G	C	8.059e^-4	0.924	SYNONYMOUS_CODING Cpr97Eb
3R	26194556	3R_26194556_SNP [dm3] 3R_30368834_SNP [dm6]	A	T	8.059e^-4	0.924	UTR_3_PRIME hdc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27643002	3R_27643002_SNP [dm3] 3R_31817280_SNP [dm6]	G	C	8.059e^-4	0.924	INTRON RhoGAP100F
3R	27643429	3R_27643429_SNP [dm3] 3R_31817707_SNP [dm6]	C	T	8.059e^-4	0.924	INTRON RhoGAP100F
3R	27643432	3R_27643432_SNP [dm3] 3R_31817710_SNP [dm6]	A	G	8.059e^-4	0.924	INTRON RhoGAP100F
3R	27643470	3R_27643470_SNP [dm3] 3R_31817748_SNP [dm6]	T	G	8.059e^-4	0.924	INTRON RhoGAP100F
3L	12967138	3L_12967138_SNP [dm3] 3L_12974038_SNP [dm6]	T	A	8.070e^-4	0.924	DOWNSTREAM CG10749 INTERGENIC
X	11138209	X_11138209_SNP [dm3] X_11244176_SNP [dm6]	C	G	8.086e^-4	0.924	INTRON CG44422
2L	10833823	2L_10833823_SNP [dm3] 2L_10833823_SNP [dm6]	G	C	8.101e^-4	0.924	INTRON Nos
2L	15492259	2L_15492259_SNP [dm3] 2L_15492259_SNP [dm6]	G	A	8.101e^-4	0.924	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15492265	2L_15492265_SNP [dm3] 2L_15492265_SNP [dm6]	T	A	8.101e^-4	0.924	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15492296	2L_15492296_SNP [dm3] 2L_15492296_SNP [dm6]	T	C	8.101e^-4	0.924	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16958018	2L_16958018_SNP [dm3] 2L_16958018_SNP [dm6]	T	C	8.101e^-4	0.924	INTERGENIC
2L	18328089	2L_18328089_SNP [dm3] 2L_18328089_SNP [dm6]	T	G	8.101e^-4	0.924	INTRON Fas3
2L	18328231	2L_18328231_SNP [dm3] 2L_18328231_SNP [dm6]	C	A	8.101e^-4	0.924	INTRON Fas3
2L	18937272	2L_18937272_SNP [dm3] 2L_18937272_SNP [dm6]	T	C	8.101e^-4	0.924	INTRON ssp3	TF binding site BDTNP1_TFBS_dl
2L	19696451	2L_19696451_SNP [dm3] 2L_19696451_SNP [dm6]	T	A	8.101e^-4	0.924	INTRON Lar
2L	19696464	2L_19696464_SNP [dm3] 2L_19696464_SNP [dm6]	A	G	8.101e^-4	0.924	INTRON Lar
2L	2244085	2L_2244085_SNP [dm3] 2L_2244085_SNP [dm6]	C	T	8.101e^-4	0.924	SYNONYMOUS_CODING CG4267
2L	2792783	2L_2792783_SNP [dm3] 2L_2792783_SNP [dm6]	C	T	8.101e^-4	0.924	UTR_3_PRIME Syt1 INTRON Syt1
2L	2809068	2L_2809068_INS [dm3] 2L_2809068_INS [dm6]	A	AAAAA	8.101e^-4	0.924	UTR_5_PRIME daw
2L	3017899	2L_3017899_SNP [dm3] 2L_3017899_SNP [dm6]	C	T	8.101e^-4	0.924	NON_SYNONYMOUS_CODING CG17224 UPSTREAM CG17264
2L	3018037	2L_3018037_SNP [dm3] 2L_3018037_SNP [dm6]	T	G	8.101e^-4	0.924	UTR_5_PRIME CG17224 UPSTREAM CG17264 INTRON CG17224	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3500874	2L_3500874_SNP [dm3] 2L_3500874_SNP [dm6]	A	T	8.101e^-4	0.924	DOWNSTREAM tim INTRON tim
2L	4257119	2L_4257119_SNP [dm3] 2L_4257119_SNP [dm6]	C	T	8.101e^-4	0.924	UPSTREAM CR45295 & 1 other EXON CR45296	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	4310724	2L_4310724_SNP [dm3] 2L_4310724_SNP [dm6]	T	C	8.101e^-4	0.924	INTRON tutl
2L	4450758	2L_4450758_SNP [dm3] 2L_4450758_SNP [dm6]	C	T	8.101e^-4	0.924	INTRON CG15439	TF binding site mE1_TFBS_cad
2L	6596565	2L_6596565_SNP [dm3] 2L_6596565_SNP [dm6]	C	T	8.101e^-4	0.924	INTRON CG11319
2L	7512958	2L_7512958_SNP [dm3] 2L_7512958_SNP [dm6]	A	G	8.101e^-4	0.924	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8575654	2L_8575654_SNP [dm3] 2L_8575654_SNP [dm6]	G	A	8.101e^-4	0.924	INTRON Sema-1a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9696133	2L_9696133_SNP [dm3] 2L_9696133_SNP [dm6]	C	A	8.101e^-4	0.924	INTRON Pka-C1
2L	9696268	2L_9696268_SNP [dm3] 2L_9696268_SNP [dm6]	T	G	8.101e^-4	0.924	UTR_3_PRIME Pka-C1	TF binding site mE1_TFBS_chinmo
2L	9696300	2L_9696300_SNP [dm3] 2L_9696300_SNP [dm6]	T	C	8.101e^-4	0.924	UTR_3_PRIME Pka-C1	TF binding site mE1_TFBS_chinmo
2L	9766001	2L_9766001_SNP [dm3] 2L_9766001_SNP [dm6]	A	T	8.101e^-4	0.924	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM und
2L	9766019	2L_9766019_SNP [dm3] 2L_9766019_SNP [dm6]	G	A	8.101e^-4	0.924	NON_SYNONYMOUS_CODING ppk18 DOWNSTREAM und
2L	9766628	2L_9766628_SNP [dm3] 2L_9766628_SNP [dm6]	C	G	8.101e^-4	0.924	SYNONYMOUS_CODING ppk18 UPSTREAM CG4017
2R	16920059	2R_16920059_SNP [dm3] 2R_21032554_SNP [dm6]	C	G	8.101e^-4	0.924	INTERGENIC
2R	537253	2R_537253_SNP [dm3] 2R_4649748_SNP [dm6]	A	C	8.101e^-4	0.924	INTERGENIC	transposable element FlyBase
3R	25318023	3R_25318023_DEL [dm3] 3R_29492301_DEL [dm6]	GATG	G	8.101e^-4	0.924	DOWNSTREAM CG2006 INTRON CG2310	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736638	2R_19736638_SNP [dm3] 2R_23849115_SNP [dm6]	C	T	8.108e^-4	0.924	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7387812	3L_7387812_SNP [dm3] 3L_7394712_SNP [dm6]	A	C	8.111e^-4	0.924	INTRON CG8563
3R	20685992	3R_20685992_SNP [dm3] 3R_24860270_SNP [dm6]	A	G	8.116e^-4	0.924	SYNONYMOUS_CODING CG13639 UPSTREAM ppk22
3R	8384777	3R_8384777_SNP [dm3] 3R_12559055_SNP [dm6]	G	A	8.116e^-4	0.924	INTRON Octbeta2R
X	17178628	X_17178628_INS [dm3] X_17284595_INS [dm6]	T	TTACCAACATGT...	8.132e^-4	0.924	UPSTREAM CG8661 INTRON CG5445
3R	18874658	3R_18874658_SNP [dm3] 3R_23048936_SNP [dm6]	G	A	8.167e^-4	0.924	UPSTREAM CG17121 DOWNSTREAM p53 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	3902022	2R_3902022_SNP [dm3] 2R_8014517_SNP [dm6]	C	T	8.226e^-4	0.924	UPSTREAM CG14762 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7254748	2R_7254748_SNP [dm3] 2R_11367243_SNP [dm6]	G	A	8.249e^-4	0.924	INTRON CG13204	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	15474939	3L_15474939_SNP [dm3] 3L_15481839_SNP [dm6]	T	C	8.249e^-4	0.924	INTERGENIC
2R	6258005	2R_6258005_SNP [dm3] 2R_10370500_SNP [dm6]	T	C	8.273e^-4	0.924	INTRON CG42732
2R	6258010	2R_6258010_SNP [dm3] 2R_10370505_SNP [dm6]	A	G	8.273e^-4	0.924	INTRON CG42732
2R	6258011	2R_6258011_DEL [dm3] 2R_10370506_DEL [dm6]	GTCTTACTCATCTT...	G	8.273e^-4	0.924	INTRON CG42732
3L	2369848	3L_2369848_SNP [dm3] 3L_2369848_SNP [dm6]	A	G	8.306e^-4	0.924	SYNONYMOUS_CODING CG1317	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10722342	3L_10722342_SNP [dm3] 3L_10729242_SNP [dm6]	G	T	8.309e^-4	0.924	INTERGENIC
3L	9436070	3L_9436070_DEL [dm3] 3L_9442970_DEL [dm6]	CCTTCTGTCCTTCC...	C	8.313e^-4	0.924	UPSTREAM CG33926 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	21136262	X_21136262_SNP [dm3] X_21265235_SNP [dm6]	G	A	8.313e^-4	0.924	INTRON CG32521
3L	15306004	3L_15306004_SNP [dm3] 3L_15312904_SNP [dm6]	C	A	8.313e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16257565	3L_16257565_SNP [dm3] 3L_16264465_SNP [dm6]	C	G	8.346e^-4	0.924	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	22844350	3L_22844350_SNP [dm3] 3L_22851250_SNP [dm6]	A	G	8.346e^-4	0.924	UPSTREAM CR43426 INTRON CR43426	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	17403555	3R_17403555_SNP [dm3] 3R_21577833_SNP [dm6]	A	G	8.346e^-4	0.924	SYNONYMOUS_CODING InR
2R	20438447	2R_20438447_SNP [dm3] 2R_24550924_SNP [dm6]	T	G	8.348e^-4	0.924	INTRON CG4622 & 1 other
2R	5562992	2R_5562992_SNP [dm3] 2R_9675487_SNP [dm6]	C	G	8.363e^-4	0.924	INTRON Mmp2	TF binding site mE1_TFBS_inv
2L	2958294	2L_2958294_SNP [dm3] 2L_2958294_SNP [dm6]	T	C	8.409e^-4	0.924	UPSTREAM Rbp9 INTRON Rbp9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11537532	2L_11537532_SNP [dm3] 2L_11537532_SNP [dm6]	G	C	8.498e^-4	0.924	DOWNSTREAM CG43438 INTERGENIC
2L	13887359	2L_13887359_SNP [dm3] 2L_13887359_SNP [dm6]	G	A	8.498e^-4	0.924	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	5257824	2L_5257824_SNP [dm3] 2L_5257824_SNP [dm6]	A	T	8.498e^-4	0.924	INTRON tkv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14551488	2R_14551488_SNP [dm3] 2R_18663983_SNP [dm6]	T	A	8.498e^-4	0.924	DOWNSTREAM CG33136 INTERGENIC
2R	17492953	2R_17492953_SNP [dm3] 2R_21605448_SNP [dm6]	C	T	8.498e^-4	0.924	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC
2R	17493126	2R_17493126_SNP [dm3] 2R_21605621_SNP [dm6]	T	C	8.498e^-4	0.924	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC
2R	17493144	2R_17493144_SNP [dm3] 2R_21605639_SNP [dm6]	A	C	8.498e^-4	0.924	UPSTREAM CR45150 DOWNSTREAM CG10433 INTERGENIC
2R	6780526	2R_6780526_SNP [dm3] 2R_10893021_SNP [dm6]	T	C	8.498e^-4	0.924	UTR_3_PRIME CG30020 DOWNSTREAM cag & 1 other
2R	6780557	2R_6780557_SNP [dm3] 2R_10893052_SNP [dm6]	C	T	8.498e^-4	0.924	UTR_3_PRIME CG30020 & 1 other DOWNSTREAM CG30020
2R	7252964	2R_7252964_SNP [dm3] 2R_11365459_SNP [dm6]	T	G	8.498e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9180826	2R_9180826_SNP [dm3] 2R_13293321_SNP [dm6]	A	G	8.498e^-4	0.924	INTRON Dh31-R
3L	15301670	3L_15301670_SNP [dm3] 3L_15308570_SNP [dm6]	C	T	8.498e^-4	0.924	SYNONYMOUS_CODING CG7255
3L	1729572	3L_1729572_SNP [dm3] 3L_1729572_SNP [dm6]	T	A	8.498e^-4	0.924	INTRON drpr	TF binding site BDTNP1_TFBS_z
3R	27850767	3R_27850767_SNP [dm3] 3R_32025045_SNP [dm6]	A	G	8.498e^-4	0.924	EXON CR45557
X	10862438	X_10862438_SNP [dm3] X_10968405_SNP [dm6]	A	G	8.498e^-4	0.924	UTR_3_PRIME CG42339
X	14154093	X_14154093_SNP [dm3] X_14260060_SNP [dm6]	C	G	8.498e^-4	0.924	INTERGENIC
X	2466278	X_2466278_SNP [dm3] X_2572245_SNP [dm6]	G	A	8.498e^-4	0.924	UTR_5_PRIME Pdfr INTRON Pdfr
X	2466311	X_2466311_INS [dm3] X_2572278_INS [dm6]	T	TGGAAACTTACATGCTGTTC...	8.498e^-4	0.924	UTR_5_PRIME Pdfr INTRON Pdfr
X	2466313	X_2466313_SNP [dm3] X_2572280_SNP [dm6]	C	G	8.498e^-4	0.924	START_GAINED Pdfr UTR_5_PRIME Pdfr INTRON Pdfr
X	7062684	X_7062684_SNP [dm3] X_7168651_SNP [dm6]	C	A	8.502e^-4	0.924	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7062706	X_7062706_SNP [dm3] X_7168673_SNP [dm6]	C	T	8.502e^-4	0.924	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10499493	3R_10499493_SNP [dm3] 3R_14673771_SNP [dm6]	A	T	8.511e^-4	0.924	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
2R	7254125	2R_7254125_SNP [dm3] 2R_11366620_SNP [dm6]	T	G	8.546e^-4	0.924	UPSTREAM CG13204 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	22208620	2L_22208620_SNP [dm3] 2L_22208620_SNP [dm6]	G	A	8.551e^-4	0.924	INTRON Ir40a	transposable element FlyBase
X	720182	X_720182_INS [dm3] X_826149_INS [dm6]	T	TAAAATCGGAAGGAGGTTGT...	8.621e^-4	0.924	INTRON CG43867	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	12047875	2R_12047875_SNP [dm3] 2R_16160370_SNP [dm6]	A	G	8.624e^-4	0.924	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14770403	2R_14770403_SNP [dm3] 2R_18882898_SNP [dm6]	T	A	8.624e^-4	0.924	INTRON sano
X	17172571	X_17172571_SNP [dm3] X_17278538_SNP [dm6]	A	G	8.678e^-4	0.924	UPSTREAM f INTRON f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18062275	2R_18062275_SNP [dm3] 2R_22174770_SNP [dm6]	A	G	8.681e^-4	0.924	UPSTREAM CG6758 & 1 other DOWNSTREAM CR45151 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11119555	3L_11119555_SNP [dm3] 3L_11126455_SNP [dm6]	T	A	8.681e^-4	0.924	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	2528461	X_2528461_SNP [dm3] X_2634428_SNP [dm6]	C	T	8.681e^-4	0.924	DOWNSTREAM PI4KIIIalpha INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18345300	3R_18345300_SNP [dm3] 3R_22519578_SNP [dm6]	G	C	8.762e^-4	0.924	UTR_3_PRIME Octbeta1R DOWNSTREAM CG5346	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	20679633	3R_20679633_SNP [dm3] 3R_24853911_SNP [dm6]	A	G	8.762e^-4	0.924	NON_SYNONYMOUS_CODING nct DOWNSTREAM HdacX
3R	23885443	3R_23885443_SNP [dm3] 3R_28059721_SNP [dm6]	G	T	8.762e^-4	0.924	INTRON CG34362
2L	20292212	2L_20292212_DEL [dm3] 2L_20292212_DEL [dm6]	CG	C	8.768e^-4	0.924	INTERGENIC
2L	20292223	2L_20292223_SNP [dm3] 2L_20292223_SNP [dm6]	A	G	8.768e^-4	0.924	INTERGENIC
2L	9696254	2L_9696254_SNP [dm3] 2L_9696254_SNP [dm6]	T	G	8.768e^-4	0.924	UTR_3_PRIME Pka-C1	TF binding site mE1_TFBS_chinmo
X	850742	X_850742_DEL [dm3] X_956709_DEL [dm6]	CGCAGTCATTTC...	C	8.785e^-4	0.924	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	12276629	2R_12276629_SNP [dm3] 2R_16389124_SNP [dm6]	T	A	8.809e^-4	0.924	INTRON Sema-2b
3R	18957035	3R_18957035_SNP [dm3] 3R_23131313_SNP [dm6]	A	G	8.809e^-4	0.924	INTRON hh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

Ma549 LT50 Rank phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results