DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.099e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

838 significant hits at p-value < 0.001.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	22048325	X_22048325_SNP [dm3] X_22646489_SNP [dm6]	C	G	1.988e^-5	0.88	INTERGENIC
3R	18866476	3R_18866476_SNP [dm3] 3R_23040754_SNP [dm6]	G	A	2.156e^-5	0.88	UPSTREAM CR44226 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	17470234	3L_17470234_SNP [dm3] 3L_17477134_SNP [dm6]	T	C	2.591e^-5	0.88	DOWNSTREAM CG34250 & 1 other INTERGENIC
3R	13857757	3R_13857757_SNP [dm3] 3R_18032035_SNP [dm6]	C	T	2.920e^-5	0.88	INTERGENIC
3R	17284860	3R_17284860_SNP [dm3] 3R_21459138_SNP [dm6]	T	G	2.920e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17284901	3R_17284901_SNP [dm3] 3R_21459179_SNP [dm6]	C	T	2.920e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17284940	3R_17284940_SNP [dm3] 3R_21459218_SNP [dm6]	G	A	2.920e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17285152	3R_17285152_SNP [dm3] 3R_21459430_SNP [dm6]	T	A	2.920e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	11716778	2R_11716778_SNP [dm3] 2R_15829273_SNP [dm6]	T	G	3.871e^-5	0.88	INTRON tun & 1 other
2R	11716798	2R_11716798_SNP [dm3] 2R_15829293_SNP [dm6]	T	G	3.871e^-5	0.88	INTRON tun & 1 other
2R	11716887	2R_11716887_SNP [dm3] 2R_15829382_SNP [dm6]	A	T	3.871e^-5	0.88	INTRON tun & 1 other
3R	12737622	3R_12737622_INS [dm3] 3R_16911900_INS [dm6]	A	ATTTT	4.198e^-5	0.88	INTRON iab-8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25414720	3R_25414720_SNP [dm3] 3R_29588998_SNP [dm6]	G	C	4.950e^-5	0.88	UTR_3_PRIME CG11470 UPSTREAM CG7567 DOWNSTREAM CG11470	TF binding site mE1_TFBS_cad
2L	16856929	2L_16856929_SNP [dm3] 2L_16856929_SNP [dm6]	T	G	5.189e^-5	0.88	INTRON CG31809	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	18348898	2L_18348898_SNP [dm3] 2L_18348898_SNP [dm6]	A	C	5.189e^-5	0.88	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18348913	2L_18348913_SNP [dm3] 2L_18348913_SNP [dm6]	A	G	5.189e^-5	0.88	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18348914	2L_18348914_SNP [dm3] 2L_18348914_SNP [dm6]	A	G	5.189e^-5	0.88	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17824091	3L_17824091_SNP [dm3] 3L_17830991_SNP [dm6]	A	T	5.481e^-5	0.88	INTRON Grd
3R	13307049	3R_13307049_SNP [dm3] 3R_17481327_SNP [dm6]	C	A	5.481e^-5	0.88	INTRON Dscam3
3L	9323033	3L_9323033_SNP [dm3] 3L_9329933_SNP [dm6]	A	C	6.029e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9323004	3L_9323004_SNP [dm3] 3L_9329904_SNP [dm6]	A	G	6.053e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9323039	3L_9323039_SNP [dm3] 3L_9329939_SNP [dm6]	C	A	6.053e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9323040	3L_9323040_SNP [dm3] 3L_9329940_SNP [dm6]	C	T	6.053e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9323047	3L_9323047_SNP [dm3] 3L_9329947_SNP [dm6]	G	A	6.053e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9323063	3L_9323063_SNP [dm3] 3L_9329963_SNP [dm6]	A	T	6.053e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9323098	3L_9323098_SNP [dm3] 3L_9329998_SNP [dm6]	A	G	6.053e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9323099	3L_9323099_INS [dm3] 3L_9329999_INS [dm6]	A	ATT	6.053e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16878234	X_16878234_SNP [dm3] X_16984201_SNP [dm6]	T	C	6.139e^-5	0.88	INTRON CG45002
X	5578157	X_5578157_SNP [dm3] X_5684124_SNP [dm6]	G	A	6.139e^-5	0.88	UTR_3_PRIME CG42449 INTRON CG42449
3L	9323084	3L_9323084_SNP [dm3] 3L_9329984_SNP [dm6]	C	A	6.281e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17284607	3R_17284607_SNP [dm3] 3R_21458885_SNP [dm6]	A	G	7.240e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17285030	3R_17285030_SNP [dm3] 3R_21459308_SNP [dm6]	T	A	7.661e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	17268649	3R_17268649_SNP [dm3] 3R_21442927_SNP [dm6]	C	T	7.834e^-5	0.88	INTRON lbe
2R	14805481	2R_14805481_SNP [dm3] 2R_18917976_SNP [dm6]	G	A	7.907e^-5	0.88	INTRON sano
2R	14805512	2R_14805512_SNP [dm3] 2R_18918007_SNP [dm6]	C	A	7.907e^-5	0.88	INTRON sano
2R	18695472	2R_18695472_SNP [dm3] 2R_22807967_SNP [dm6]	C	T	7.907e^-5	0.88	UTR_5_PRIME stl UPSTREAM stl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17285618	3R_17285618_SNP [dm3] 3R_21459896_SNP [dm6]	A	C	8.077e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18047894	X_18047894_SNP [dm3] X_18153861_SNP [dm6]	G	T	8.256e^-5	0.88	INTERGENIC
3R	17025861	3R_17025861_SNP [dm3] 3R_21200139_SNP [dm6]	G	T	8.629e^-5	0.88	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3R	18903399	3R_18903399_SNP [dm3] 3R_23077677_SNP [dm6]	T	A	8.629e^-5	0.88	INTRON CG13830
2R	19033394	2R_19033394_SNP [dm3] 2R_23145871_SNP [dm6]	A	T	9.186e^-5	0.88	INTERGENIC
3R	15799258	3R_15799258_SNP [dm3] 3R_19973536_SNP [dm6]	T	A	9.186e^-5	0.88	SYNONYMOUS_CODING CG31213 INTRON Hs6st
3R	17285839	3R_17285839_SNP [dm3] 3R_21460117_SNP [dm6]	G	A	9.290e^-5	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5873269	2R_5873269_INS [dm3] 2R_9985764_INS [dm6]	G	GGTCGTTC	9.579e^-5	0.88	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5873271	2R_5873271_DEL [dm3] 2R_9985766_DEL [dm6]	ACGACC	A	9.579e^-5	0.88	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21409626	3R_21409626_SNP [dm3] 3R_25583904_SNP [dm6]	C	T	1.038e^-4	0.88	UPSTREAM CG4582 INTRON msi
3R	25414716	3R_25414716_SNP [dm3] 3R_29588994_SNP [dm6]	G	A	1.040e^-4	0.88	UTR_3_PRIME CG11470 UPSTREAM CG7567 DOWNSTREAM CG11470	TF binding site mE1_TFBS_cad
3R	25430788	3R_25430788_SNP [dm3] 3R_29605066_SNP [dm6]	G	C	1.040e^-4	0.88	INTRON alph
2R	12977324	2R_12977324_SNP [dm3] 2R_17089819_SNP [dm6]	G	A	1.078e^-4	0.88	SYNONYMOUS_CODING Sply	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9323028	3L_9323028_SNP [dm3] 3L_9329928_SNP [dm6]	G	C	1.090e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9323228	3L_9323228_SNP [dm3] 3L_9330128_SNP [dm6]	C	A	1.129e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17824082	3L_17824082_SNP [dm3] 3L_17830982_SNP [dm6]	A	G	1.140e^-4	0.88	INTRON Grd
3L	18734045	3L_18734045_DEL [dm3] 3L_18740945_DEL [dm6]	ATTGTG	T	1.147e^-4	0.88	INTERGENIC
X	18816823	X_18816823_SNP [dm3] X_18922790_SNP [dm6]	C	T	1.154e^-4	0.88	INTERGENIC
3L	11839286	3L_11839286_SNP [dm3] 3L_11846186_SNP [dm6]	A	G	1.165e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11839293	3L_11839293_SNP [dm3] 3L_11846193_SNP [dm6]	A	G	1.165e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11839301	3L_11839301_SNP [dm3] 3L_11846201_SNP [dm6]	T	C	1.165e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11715582	2R_11715582_SNP [dm3] 2R_15828077_SNP [dm6]	T	G	1.216e^-4	0.88	INTRON tun & 1 other
2R	11715613	2R_11715613_SNP [dm3] 2R_15828108_SNP [dm6]	T	C	1.216e^-4	0.88	INTRON tun & 1 other
X	9107190	X_9107190_SNP [dm3] X_9213157_SNP [dm6]	A	G	1.216e^-4	0.88	INTERGENIC
3L	9323094	3L_9323094_SNP [dm3] 3L_9329994_SNP [dm6]	T	A	1.220e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9323095	3L_9323095_SNP [dm3] 3L_9329995_SNP [dm6]	C	A	1.220e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16966539	3R_16966539_SNP [dm3] 3R_21140817_SNP [dm6]	A	C	1.263e^-4	0.88	UTR_5_PRIME SNF4Agamma DOWNSTREAM meigo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16966568	3R_16966568_SNP [dm3] 3R_21140846_SNP [dm6]	A	G	1.263e^-4	0.88	UTR_5_PRIME SNF4Agamma DOWNSTREAM meigo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16967232	3R_16967232_SNP [dm3] 3R_21141510_SNP [dm6]	T	C	1.263e^-4	0.88	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16878173	X_16878173_INS [dm3] X_16984140_INS [dm6]	A	AT	1.311e^-4	0.88	INTRON CG45002
3R	17285153	3R_17285153_SNP [dm3] 3R_21459431_SNP [dm6]	T	G	1.312e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17285169	3R_17285169_DEL [dm3] 3R_21459447_DEL [dm6]	ATTAGGTAA	A	1.312e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17285183	3R_17285183_SNP [dm3] 3R_21459461_SNP [dm6]	T	C	1.312e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17285201	3R_17285201_SNP [dm3] 3R_21459479_SNP [dm6]	T	A	1.312e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17285121	3R_17285121_INS [dm3] 3R_21459399_INS [dm6]	C	CTATCAAC	1.346e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17285133	3R_17285133_SNP [dm3] 3R_21459411_SNP [dm6]	G	A	1.346e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	17059244	3R_17059244_SNP [dm3] 3R_21233522_SNP [dm6]	T	C	1.378e^-4	0.88	INTRON e	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18695471	2R_18695471_SNP [dm3] 2R_22807966_SNP [dm6]	T	A	1.381e^-4	0.88	UTR_5_PRIME stl UPSTREAM stl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16742348	3R_16742348_SNP [dm3] 3R_20916626_SNP [dm6]	T	C	1.392e^-4	0.88	INTRON CG31191 & 1 other
3R	12737570	3R_12737570_SNP [dm3] 3R_16911848_SNP [dm6]	G	A	1.424e^-4	0.88	INTRON iab-8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12737615	3R_12737615_DEL [dm3] 3R_16911893_DEL [dm6]	GTATAAA	G	1.424e^-4	0.88	INTRON iab-8	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12112386	2R_12112386_SNP [dm3] 2R_16224881_SNP [dm6]	G	T	1.449e^-4	0.88	SYNONYMOUS_CODING CG15706
3L	12436372	3L_12436372_SNP [dm3] 3L_12443272_SNP [dm6]	C	T	1.449e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_sens
X	18512742	X_18512742_SNP [dm3] X_18618709_SNP [dm6]	G	A	1.449e^-4	0.88	INTERGENIC
X	8242161	X_8242161_SNP [dm3] X_8348128_SNP [dm6]	A	G	1.449e^-4	0.88	INTRON nAChRalpha3
2R	14148488	2R_14148488_SNP [dm3] 2R_18260983_SNP [dm6]	A	G	1.451e^-4	0.88	INTERGENIC
2R	14148512	2R_14148512_SNP [dm3] 2R_18261007_SNP [dm6]	A	T	1.451e^-4	0.88	INTERGENIC
3R	17289549	3R_17289549_SNP [dm3] 3R_21463827_SNP [dm6]	C	G	1.482e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	14502284	3L_14502284_SNP [dm3] 3L_14509184_SNP [dm6]	G	C	1.522e^-4	0.88	SYNONYMOUS_CODING bbg
3L	14502287	3L_14502287_SNP [dm3] 3L_14509187_SNP [dm6]	G	A	1.522e^-4	0.88	SYNONYMOUS_CODING bbg
X	16878172	X_16878172_SNP [dm3] X_16984139_SNP [dm6]	A	T	1.593e^-4	0.88	INTRON CG45002
X	16878175	X_16878175_INS [dm3] X_16984142_INS [dm6]	T	TAGA	1.593e^-4	0.88	INTRON CG45002
2R	15070065	2R_15070065_DEL [dm3] 2R_19182560_DEL [dm6]	AACTTGGAGTATAAA...	A	1.642e^-4	0.88	INTRON hppy
X	6637583	X_6637583_SNP [dm3] X_6743550_SNP [dm6]	A	C	1.672e^-4	0.88	UPSTREAM snoRNA:Psi28S-3436a & 2 others DOWNSTREAM snoRNA:Psi28S-1232 & 1 other INTRON RpL17	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12294525	3L_12294525_SNP [dm3] 3L_12301425_SNP [dm6]	A	T	1.674e^-4	0.88	DOWNSTREAM CR44551 EXON CR44550
2R	17443408	2R_17443408_SNP [dm3] 2R_21555903_SNP [dm6]	C	T	1.711e^-4	0.88	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad
3L	11823301	3L_11823301_SNP [dm3] 3L_11830201_SNP [dm6]	T	A	1.711e^-4	0.88	SYNONYMOUS_CODING CG7264 INTRON CycA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26758155	3R_26758155_SNP [dm3] 3R_30932433_SNP [dm6]	T	C	1.738e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10205412	3L_10205412_SNP [dm3] 3L_10212312_SNP [dm6]	G	A	1.745e^-4	0.88	INTERGENIC
3R	16438457	3R_16438457_SNP [dm3] 3R_20612735_SNP [dm6]	C	T	1.756e^-4	0.88	DOWNSTREAM bon INTRON CG15923
3R	16438458	3R_16438458_SNP [dm3] 3R_20612736_SNP [dm6]	A	G	1.756e^-4	0.88	DOWNSTREAM bon INTRON CG15923
3R	16893364	3R_16893364_SNP [dm3] 3R_21067642_SNP [dm6]	G	T	1.756e^-4	0.88	INTRON AnxB9	TF binding site mE1_TFBS_HSA
3R	14778344	3R_14778344_SNP [dm3] 3R_18952622_SNP [dm6]	A	G	1.774e^-4	0.88	INTRON CG42613 & 1 other
2L	12648871	2L_12648871_SNP [dm3] 2L_12648871_SNP [dm6]	T	C	1.791e^-4	0.88	INTERGENIC
2L	19559828	2L_19559828_SNP [dm3] 2L_19559828_SNP [dm6]	C	T	1.791e^-4	0.88	SYNONYMOUS_CODING Tep5
3L	15509105	3L_15509105_SNP [dm3] 3L_15516005_SNP [dm6]	T	G	1.795e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	8314729	3L_8314729_SNP [dm3] 3L_8321629_SNP [dm6]	G	T	1.804e^-4	0.88	INTRON CG13670
X	6637735	X_6637735_SNP [dm3] X_6743702_SNP [dm6]	G	A	1.804e^-4	0.88	UPSTREAM snoRNA:Psi28S-3436a & 2 others DOWNSTREAM tRNA:CR32740 INTRON RpL17 EXON snoRNA:Psi28S-1232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
X	6637756	X_6637756_SNP [dm3] X_6743723_SNP [dm6]	G	C	1.804e^-4	0.88	UPSTREAM snoRNA:Psi28S-3436a & 2 others DOWNSTREAM tRNA:CR32740 INTRON RpL17 EXON snoRNA:Psi28S-1232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	18903153	3R_18903153_SNP [dm3] 3R_23077431_SNP [dm6]	T	C	1.825e^-4	0.88	INTRON CG13830
3R	18903187	3R_18903187_SNP [dm3] 3R_23077465_SNP [dm6]	C	T	1.825e^-4	0.88	INTRON CG13830
3R	18903201	3R_18903201_SNP [dm3] 3R_23077479_SNP [dm6]	T	C	1.825e^-4	0.88	INTRON CG13830
3L	13226592	3L_13226592_SNP [dm3] 3L_13233492_SNP [dm6]	T	C	1.859e^-4	0.88	INTRON caps
X	15288300	X_15288300_SNP [dm3] X_15394267_SNP [dm6]	A	G	1.883e^-4	0.88	SYNONYMOUS_CODING Cngl	TF binding site mE1_TFBS_chinmo
3R	16417595	3R_16417595_SNP [dm3] 3R_20591873_SNP [dm6]	C	T	1.886e^-4	0.88	SYNONYMOUS_CODING CG4159 DOWNSTREAM Srp72	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22574021	3R_22574021_SNP [dm3] 3R_26748299_SNP [dm6]	A	G	1.886e^-4	0.88	INTERGENIC
3L	9718285	3L_9718285_SNP [dm3] 3L_9725185_SNP [dm6]	A	C	1.897e^-4	0.88	SYNONYMOUS_CODING defl
3L	15509085	3L_15509085_SNP [dm3] 3L_15515985_SNP [dm6]	G	A	1.932e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	11027457	3L_11027457_SNP [dm3] 3L_11034357_SNP [dm6]	A	C	1.945e^-4	0.88	UPSTREAM CR44547 INTERGENIC
3R	17266947	3R_17266947_SNP [dm3] 3R_21441225_SNP [dm6]	T	G	1.949e^-4	0.88	DOWNSTREAM lbe INTERGENIC
X	16878160	X_16878160_SNP [dm3] X_16984127_SNP [dm6]	A	G	1.956e^-4	0.88	INTRON CG45002
X	16878162	X_16878162_SNP [dm3] X_16984129_SNP [dm6]	C	T	1.956e^-4	0.88	INTRON CG45002
3L	4225187	3L_4225187_SNP [dm3] 3L_4225187_SNP [dm6]	T	C	1.978e^-4	0.88	NON_SYNONYMOUS_CODING ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10587261	3L_10587261_SNP [dm3] 3L_10594161_SNP [dm6]	G	C	2.032e^-4	0.88	DOWNSTREAM A2bp1 INTERGENIC
3L	13441456	3L_13441456_SNP [dm3] 3L_13448356_SNP [dm6]	T	C	2.073e^-4	0.88	NON_SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133	TF binding site mE1_TFBS_HSA
3L	6202515	3L_6202515_SNP [dm3] 3L_6209415_SNP [dm6]	A	T	2.089e^-4	0.88	SYNONYMOUS_CODING LanA	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15875085	3L_15875085_SNP [dm3] 3L_15881985_SNP [dm6]	A	G	2.125e^-4	0.88	INTRON pHCl
3R	17224420	3R_17224420_SNP [dm3] 3R_21398698_SNP [dm6]	G	A	2.179e^-4	0.88	SYNONYMOUS_CODING CG6475	TF binding site mE1_TFBS_sens
3R	25497880	3R_25497880_SNP [dm3] 3R_29672158_SNP [dm6]	T	C	2.179e^-4	0.88	SYNONYMOUS_CODING Obp99a UPSTREAM ppk19 DOWNSTREAM ppk30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6332590	2L_6332590_SNP [dm3] 2L_6332590_SNP [dm6]	A	C	2.190e^-4	0.88	UTR_3_PRIME PDZ-GEF DOWNSTREAM PDZ-GEF & 1 other
3R	25607982	3R_25607982_SNP [dm3] 3R_29782260_SNP [dm6]	A	G	2.215e^-4	0.88	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	15101374	3L_15101374_SNP [dm3] 3L_15108274_SNP [dm6]	C	T	2.224e^-4	0.88	INTRON CTPsyn & 1 other EXON CR43971	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15102360	3L_15102360_SNP [dm3] 3L_15109260_SNP [dm6]	A	G	2.224e^-4	0.88	UPSTREAM CR43971 INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl
3L	15103211	3L_15103211_SNP [dm3] 3L_15110111_SNP [dm6]	C	T	2.224e^-4	0.88	NON_SYNONYMOUS_CODING CG45071 INTRON CTPsyn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15103560	3L_15103560_SNP [dm3] 3L_15110460_SNP [dm6]	C	T	2.224e^-4	0.88	SYNONYMOUS_CODING CG45071 INTRON CTPsyn
X	9867670	X_9867670_SNP [dm3] X_9973637_SNP [dm6]	G	T	2.233e^-4	0.88	INTRON CG43386
3R	12929172	3R_12929172_SNP [dm3] 3R_17103450_SNP [dm6]	G	T	2.288e^-4	0.88	INTRON cher
3R	12929244	3R_12929244_SNP [dm3] 3R_17103522_SNP [dm6]	T	C	2.288e^-4	0.88	INTRON cher
2R	18804762	2R_18804762_SNP [dm3] 2R_22917239_SNP [dm6]	T	A	2.316e^-4	0.88	NON_SYNONYMOUS_CODING CG30187 DOWNSTREAM nahoda
3L	5770509	3L_5770509_SNP [dm3] 3L_5777409_SNP [dm6]	A	G	2.316e^-4	0.88	UPSTREAM vito DOWNSTREAM Myt1 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16715579	3R_16715579_SNP [dm3] 3R_20889857_SNP [dm6]	G	C	2.326e^-4	0.88	UPSTREAM tRNA:CR31480 INTERGENIC
3R	14138135	3R_14138135_SNP [dm3] 3R_18312413_SNP [dm6]	A	G	2.330e^-4	0.88	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	8314658	3L_8314658_SNP [dm3] 3L_8321558_SNP [dm6]	C	G	2.341e^-4	0.88	INTRON CG13670
3R	15799249	3R_15799249_SNP [dm3] 3R_19973527_SNP [dm6]	A	G	2.374e^-4	0.88	SYNONYMOUS_CODING CG31213 INTRON Hs6st
3L	15509132	3L_15509132_SNP [dm3] 3L_15516032_SNP [dm6]	G	A	2.399e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	15509138	3L_15509138_SNP [dm3] 3L_15516038_SNP [dm6]	T	A	2.399e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	15509151	3L_15509151_SNP [dm3] 3L_15516051_SNP [dm6]	A	C	2.399e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	15509158	3L_15509158_SNP [dm3] 3L_15516058_SNP [dm6]	G	T	2.399e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	15509159	3L_15509159_SNP [dm3] 3L_15516059_SNP [dm6]	G	A	2.399e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	15509195	3L_15509195_SNP [dm3] 3L_15516095_SNP [dm6]	T	G	2.399e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	18902954	3R_18902954_SNP [dm3] 3R_23077232_SNP [dm6]	C	A	2.413e^-4	0.88	INTRON CG13830
3R	18903057	3R_18903057_SNP [dm3] 3R_23077335_SNP [dm6]	A	G	2.413e^-4	0.88	INTRON CG13830
3R	11840167	3R_11840167_DEL [dm3] 3R_16014445_DEL [dm6]	AT	A	2.466e^-4	0.88	INTRON GATAe
3R	11840171	3R_11840171_SNP [dm3] 3R_16014449_SNP [dm6]	A	T	2.466e^-4	0.88	INTRON GATAe
3R	11840174	3R_11840174_SNP [dm3] 3R_16014452_SNP [dm6]	A	C	2.466e^-4	0.88	INTRON GATAe
2L	1549266	2L_1549266_SNP [dm3] 2L_1549266_SNP [dm6]	A	G	2.484e^-4	0.88	INTERGENIC
X	16141407	X_16141407_INS [dm3] X_16247374_INS [dm6]	T	TCT	2.484e^-4	0.88	INTERGENIC
2R	19514740	2R_19514740_SNP [dm3] 2R_23627217_SNP [dm6]	T	A	2.491e^-4	0.88	INTERGENIC
2R	19810565	2R_19810565_SNP [dm3] 2R_23923042_SNP [dm6]	T	C	2.491e^-4	0.88	INTRON kcc	TF binding site mE1_TFBS_cad
2R	19928720	2R_19928720_SNP [dm3] 2R_24041197_SNP [dm6]	C	T	2.491e^-4	0.88	SYNONYMOUS_CODING IntS1	TF binding site mE1_TFBS_chinmo
3L	11654484	3L_11654484_SNP [dm3] 3L_11661384_SNP [dm6]	G	A	2.491e^-4	0.88	INTRON CG32085
3R	14138238	3R_14138238_SNP [dm3] 3R_18312516_SNP [dm6]	C	T	2.502e^-4	0.88	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	11715665	2R_11715665_SNP [dm3] 2R_15828160_SNP [dm6]	T	C	2.517e^-4	0.88	INTRON tun & 1 other
3L	11096794	3L_11096794_SNP [dm3] 3L_11103694_SNP [dm6]	C	G	2.524e^-4	0.88	SYNONYMOUS_CODING CG32071 UPSTREAM Elo68alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6066369	3L_6066369_SNP [dm3] 3L_6073269_SNP [dm6]	G	C	2.524e^-4	0.88	NON_SYNONYMOUS_CODING CG6602 DOWNSTREAM CG13295
X	17654024	X_17654024_SNP [dm3] X_17759991_SNP [dm6]	T	A	2.524e^-4	0.88	INTERGENIC
X	17654038	X_17654038_SNP [dm3] X_17760005_SNP [dm6]	G	A	2.524e^-4	0.88	INTERGENIC
X	17654042	X_17654042_SNP [dm3] X_17760009_SNP [dm6]	T	G	2.524e^-4	0.88	INTERGENIC
X	17654046	X_17654046_SNP [dm3] X_17760013_SNP [dm6]	A	T	2.524e^-4	0.88	INTERGENIC
X	17654066	X_17654066_SNP [dm3] X_17760033_SNP [dm6]	G	A	2.524e^-4	0.88	INTERGENIC
X	17654068	X_17654068_INS [dm3] X_17760035_INS [dm6]	C	ATT	2.524e^-4	0.88	INTERGENIC
X	17654119	X_17654119_SNP [dm3] X_17760086_SNP [dm6]	A	G	2.524e^-4	0.88	INTERGENIC
2L	19283216	2L_19283216_SNP [dm3] 2L_19283216_SNP [dm6]	C	A	2.558e^-4	0.88	INTERGENIC
2L	19283230	2L_19283230_SNP [dm3] 2L_19283230_SNP [dm6]	T	A	2.558e^-4	0.88	INTERGENIC
2L	19556383	2L_19556383_SNP [dm3] 2L_19556383_SNP [dm6]	C	G	2.558e^-4	0.88	NON_SYNONYMOUS_CODING Tep4
2L	19556624	2L_19556624_SNP [dm3] 2L_19556624_SNP [dm6]	C	G	2.558e^-4	0.88	DOWNSTREAM Tep4 INTERGENIC
2L	19559357	2L_19559357_SNP [dm3] 2L_19559357_SNP [dm6]	T	C	2.558e^-4	0.88	SYNONYMOUS_CODING Tep5
2L	19559976	2L_19559976_SNP [dm3] 2L_19559976_SNP [dm6]	A	G	2.558e^-4	0.88	NON_SYNONYMOUS_CODING Tep5	TF binding site mE1_TFBS_sens
2L	19560296	2L_19560296_SNP [dm3] 2L_19560296_SNP [dm6]	C	A	2.558e^-4	0.88	INTRON Tep5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19561779	2L_19561779_SNP [dm3] 2L_19561779_SNP [dm6]	G	A	2.558e^-4	0.88	NON_SYNONYMOUS_CODING Tep5	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	11716692	2R_11716692_SNP [dm3] 2R_15829187_SNP [dm6]	T	C	2.558e^-4	0.88	INTRON tun & 1 other
2R	11716706	2R_11716706_SNP [dm3] 2R_15829201_SNP [dm6]	A	C	2.558e^-4	0.88	INTRON tun & 1 other
3L	12093850	3L_12093850_SNP [dm3] 3L_12100750_SNP [dm6]	G	A	2.558e^-4	0.88	INTERGENIC
3R	2664962	3R_2664962_SNP [dm3] 3R_6839240_SNP [dm6]	C	G	2.558e^-4	0.88	INTRON Scr	regulatory region REDfly_CRMs
X	6377266	X_6377266_SNP [dm3] X_6483233_SNP [dm6]	G	A	2.558e^-4	0.88	INTRON CG42340
3L	10052195	3L_10052195_SNP [dm3] 3L_10059095_SNP [dm6]	G	A	2.565e^-4	0.88	INTRON dpr6
3L	4372618	3L_4372618_SNP [dm3] 3L_4372618_SNP [dm6]	A	C	2.565e^-4	0.88	INTRON DopEcR	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22235917	3R_22235917_SNP [dm3] 3R_26410195_SNP [dm6]	T	A	2.565e^-4	0.88	INTERGENIC
2L	1207042	2L_1207042_SNP [dm3] 2L_1207042_SNP [dm6]	A	G	2.651e^-4	0.88	INTERGENIC
2R	3827666	2R_3827666_SNP [dm3] 2R_7940161_SNP [dm6]	G	C	2.695e^-4	0.88	UPSTREAM CG30380 INTRON CG30379	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21328275	3R_21328275_SNP [dm3] 3R_25502553_SNP [dm6]	C	A	2.739e^-4	0.88	UPSTREAM CR43457 & 1 other EXON CR43456	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	21328282	3R_21328282_SNP [dm3] 3R_25502560_SNP [dm6]	A	G	2.739e^-4	0.88	UPSTREAM CR43457 & 1 other EXON CR43456	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	21328315	3R_21328315_SNP [dm3] 3R_25502593_SNP [dm6]	T	C	2.739e^-4	0.88	UPSTREAM CR43457 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1849506	2L_1849506_SNP [dm3] 2L_1849506_SNP [dm6]	C	A	2.755e^-4	0.88	INTRON wry
2R	20511009	2R_20511009_SNP [dm3] 2R_24623486_SNP [dm6]	G	A	2.761e^-4	0.88	INTRON CG13594	TF binding site BDTNP1_TFBS_dl
X	18047749	X_18047749_MNP [dm3] X_18153716_MNP [dm6]	GAT	TTG	2.761e^-4	0.88	INTERGENIC
X	18047757	X_18047757_SNP [dm3] X_18153724_SNP [dm6]	G	A	2.761e^-4	0.88	INTERGENIC
2L	7583659	2L_7583659_SNP [dm3] 2L_7583659_SNP [dm6]	T	G	2.779e^-4	0.88	DOWNSTREAM Spn28B INTERGENIC
X	19518808	X_19518808_SNP [dm3] X_19624775_SNP [dm6]	C	T	2.800e^-4	0.88	UTR_3_PRIME MKP-4 UPSTREAM CG14212	TF binding site mE1_TFBS_cad
X	9730743	X_9730743_SNP [dm3] X_9836710_SNP [dm6]	G	A	2.800e^-4	0.88	SYNONYMOUS_CODING CG32698
2L	20388629	2L_20388629_SNP [dm3] 2L_20388629_SNP [dm6]	G	T	2.844e^-4	0.88	INTRON CG10947
2R	16754382	2R_16754382_SNP [dm3] 2R_20866877_SNP [dm6]	C	T	2.844e^-4	0.88	SYNONYMOUS_CODING CG15227
2R	16754510	2R_16754510_SNP [dm3] 2R_20867005_SNP [dm6]	T	C	2.844e^-4	0.88	UTR_3_PRIME CG15227
2R	19416852	2R_19416852_SNP [dm3] 2R_23529329_SNP [dm6]	A	T	2.844e^-4	0.88	INTRON bw
3L	3498680	3L_3498680_SNP [dm3] 3L_3498680_SNP [dm6]	T	C	2.844e^-4	0.88	INTRON CG42324
X	5528102	X_5528102_SNP [dm3] X_5634069_SNP [dm6]	G	T	2.844e^-4	0.88	INTRON CG42492
3R	10177292	3R_10177292_SNP [dm3] 3R_14351570_SNP [dm6]	C	T	2.896e^-4	0.88	INTRON NK7.1
2L	1026415	2L_1026415_SNP [dm3] 2L_1026415_SNP [dm6]	G	T	2.902e^-4	0.88	NON_SYNONYMOUS_CODING CG4375 INTRON IA-2
2L	1026429	2L_1026429_SNP [dm3] 2L_1026429_SNP [dm6]	A	C	2.902e^-4	0.88	SYNONYMOUS_CODING CG4375 INTRON IA-2
2L	19861650	2L_19861650_SNP [dm3] 2L_19861650_SNP [dm6]	G	A	2.902e^-4	0.88	INTRON sick
3R	17653406	3R_17653406_SNP [dm3] 3R_21827684_SNP [dm6]	C	T	2.948e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	16967178	3R_16967178_SNP [dm3] 3R_21141456_SNP [dm6]	T	A	2.950e^-4	0.88	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17653327	3R_17653327_SNP [dm3] 3R_21827605_SNP [dm6]	A	C	2.966e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	17653328	3R_17653328_SNP [dm3] 3R_21827606_SNP [dm6]	C	T	2.966e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	17653345	3R_17653345_INS [dm3] 3R_21827623_INS [dm6]	A	TTTACTTTAT	2.966e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	17653353	3R_17653353_SNP [dm3] 3R_21827631_SNP [dm6]	T	A	2.966e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	17653360	3R_17653360_INS [dm3] 3R_21827638_INS [dm6]	T	TTCAT	2.966e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	17653411	3R_17653411_INS [dm3] 3R_21827689_INS [dm6]	G	GCCAGTCG	2.966e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	3843103	2R_3843103_SNP [dm3] 2R_7955598_SNP [dm6]	T	C	2.991e^-4	0.88	UTR_5_PRIME CG14764 UPSTREAM CG2906	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3843106	2R_3843106_SNP [dm3] 2R_7955601_SNP [dm6]	A	C	2.991e^-4	0.88	UTR_5_PRIME CG14764 UPSTREAM CG2906	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	12911019	3R_12911019_SNP [dm3] 3R_17085297_SNP [dm6]	T	C	3.000e^-4	0.88	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16714566	3R_16714566_SNP [dm3] 3R_20888844_SNP [dm6]	C	T	3.000e^-4	0.88	INTERGENIC
3R	23686835	3R_23686835_SNP [dm3] 3R_27861113_SNP [dm6]	C	T	3.000e^-4	0.88	INTRON CG34353
3R	23686882	3R_23686882_SNP [dm3] 3R_27861160_SNP [dm6]	T	G	3.000e^-4	0.88	INTRON CG34353
X	9107180	X_9107180_SNP [dm3] X_9213147_SNP [dm6]	G	A	3.010e^-4	0.88	INTERGENIC
3R	17285590	3R_17285590_SNP [dm3] 3R_21459868_SNP [dm6]	A	T	3.049e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6770306	2L_6770306_SNP [dm3] 2L_6770306_SNP [dm6]	T	C	3.057e^-4	0.88	INTRON CG11321
3R	9423775	3R_9423775_SNP [dm3] 3R_13598053_SNP [dm6]	T	C	3.091e^-4	0.88	INTERGENIC
3R	14339852	3R_14339852_SNP [dm3] 3R_18514130_SNP [dm6]	T	G	3.099e^-4	0.88	UTR_5_PRIME fru INTRON fru
3R	15760475	3R_15760475_SNP [dm3] 3R_19934753_SNP [dm6]	C	T	3.099e^-4	0.88	UTR_5_PRIME mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18734745	X_18734745_SNP [dm3] X_18840712_SNP [dm6]	G	C	3.109e^-4	0.88	SYNONYMOUS_CODING Pvf1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4523146	3R_4523146_SNP [dm3] 3R_8697424_SNP [dm6]	T	A	3.115e^-4	0.88	UTR_5_PRIME hb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Trl
3L	15509025	3L_15509025_SNP [dm3] 3L_15515925_SNP [dm6]	T	A	3.157e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	10326375	2R_10326375_SNP [dm3] 2R_14438870_SNP [dm6]	T	C	3.159e^-4	0.88	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10326376	2R_10326376_SNP [dm3] 2R_14438871_SNP [dm6]	G	A	3.159e^-4	0.88	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7256424	2R_7256424_SNP [dm3] 2R_11368919_SNP [dm6]	G	C	3.159e^-4	0.88	SYNONYMOUS_CODING CG13204	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9210640	X_9210640_SNP [dm3] X_9316607_SNP [dm6]	G	A	3.159e^-4	0.88	INTERGENIC
3L	15115409	3L_15115409_SNP [dm3] 3L_15122309_SNP [dm6]	A	G	3.198e^-4	0.88	DOWNSTREAM CG32847 INTRON Cep135 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	18924611	3R_18924611_SNP [dm3] 3R_23098889_SNP [dm6]	A	T	3.209e^-4	0.88	UPSTREAM CG6738 INTRON CG13830 & 1 other
3R	12091145	3R_12091145_SNP [dm3] 3R_16265423_SNP [dm6]	C	T	3.210e^-4	0.88	SYNONYMOUS_CODING asun	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11028705	2L_11028705_SNP [dm3] 2L_11028705_SNP [dm6]	C	T	3.210e^-4	0.88	DOWNSTREAM Samuel INTRON Samuel
2R	4080633	2R_4080633_SNP [dm3] 2R_8193128_SNP [dm6]	A	T	3.210e^-4	0.88	INTRON LRP1
2R	4080641	2R_4080641_SNP [dm3] 2R_8193136_SNP [dm6]	T	C	3.210e^-4	0.88	INTRON LRP1
2R	15069323	2R_15069323_SNP [dm3] 2R_19181818_SNP [dm6]	C	A	3.295e^-4	0.88	INTRON hppy
3R	17083156	3R_17083156_SNP [dm3] 3R_21257434_SNP [dm6]	C	A	3.297e^-4	0.88	INTRON ETHR
3L	15795414	3L_15795414_SNP [dm3] 3L_15802314_SNP [dm6]	A	G	3.327e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	1082330	3L_1082330_SNP [dm3] 3L_1082330_SNP [dm6]	A	G	3.411e^-4	0.88	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17264240	3R_17264240_SNP [dm3] 3R_21438518_SNP [dm6]	C	T	3.411e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	27468874	3R_27468874_SNP [dm3] 3R_31643152_SNP [dm6]	A	G	3.417e^-4	0.88	INTRON kek6
3R	15775766	3R_15775766_SNP [dm3] 3R_19950044_SNP [dm6]	A	G	3.447e^-4	0.88	INTRON Hs6st
3L	2077738	3L_2077738_SNP [dm3] 3L_2077738_SNP [dm6]	C	T	3.451e^-4	0.88	NON_SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_sens
3L	10705302	3L_10705302_SNP [dm3] 3L_10712202_SNP [dm6]	T	C	3.498e^-4	0.88	INTERGENIC
2L	21980086	2L_21980086_SNP [dm3] 2L_21980086_SNP [dm6]	C	T	3.538e^-4	0.88	INTERGENIC
2L	18826175	2L_18826175_SNP [dm3] 2L_18826175_SNP [dm6]	G	A	3.539e^-4	0.88	NON_SYNONYMOUS_CODING CG17323 UPSTREAM CG17322	TF binding site mE1_TFBS_cad
3L	15102822	3L_15102822_SNP [dm3] 3L_15109722_SNP [dm6]	G	A	3.539e^-4	0.88	SYNONYMOUS_CODING CG45071 UPSTREAM CR43971 INTRON CTPsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10860571	2L_10860571_SNP [dm3] 2L_10860571_SNP [dm6]	T	C	3.549e^-4	0.88	SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10860576	2L_10860576_SNP [dm3] 2L_10860576_SNP [dm6]	C	T	3.549e^-4	0.88	SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10860947	2L_10860947_SNP [dm3] 2L_10860947_SNP [dm6]	C	G	3.549e^-4	0.88	INTRON Stam	TF binding site mE1_TFBS_cad
3L	1081842	3L_1081842_SNP [dm3] 3L_1081842_SNP [dm6]	G	T	3.549e^-4	0.88	INTRON bab1	TF binding site BDTNP1_TFBS_twi
X	15158570	X_15158570_SNP [dm3] X_15264537_SNP [dm6]	C	A	3.549e^-4	0.88	INTERGENIC
X	2276953	X_2276953_SNP [dm3] X_2382920_SNP [dm6]	C	G	3.549e^-4	0.88	INTRON PsGEF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7969139	X_7969139_SNP [dm3] X_8075106_SNP [dm6]	G	T	3.549e^-4	0.88	NON_SYNONYMOUS_CODING Upf2 UPSTREAM CG1571	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10816889	3L_10816889_SNP [dm3] 3L_10823789_SNP [dm6]	G	A	3.569e^-4	0.88	INTERGENIC
3L	12294509	3L_12294509_SNP [dm3] 3L_12301409_SNP [dm6]	T	C	3.569e^-4	0.88	DOWNSTREAM CR44551 EXON CR44550
3R	17285338	3R_17285338_SNP [dm3] 3R_21459616_SNP [dm6]	C	A	3.641e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	4691566	3L_4691566_SNP [dm3] 3L_4691566_SNP [dm6]	T	C	3.648e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9867679	X_9867679_SNP [dm3] X_9973646_SNP [dm6]	T	A	3.678e^-4	0.88	INTRON CG43386
3R	14556726	3R_14556726_SNP [dm3] 3R_18731004_SNP [dm6]	A	C	3.703e^-4	0.88	UTR_3_PRIME Cha
3R	14558602	3R_14558602_SNP [dm3] 3R_18732880_SNP [dm6]	G	A	3.703e^-4	0.88	SYNONYMOUS_CODING CG14302 DOWNSTREAM Mekk1 & 1 other
3L	15849550	3L_15849550_SNP [dm3] 3L_15856450_SNP [dm6]	T	G	3.713e^-4	0.88	INTRON pHCl
3L	9876938	3L_9876938_SNP [dm3] 3L_9883838_SNP [dm6]	A	G	3.713e^-4	0.88	SYNONYMOUS_CODING CG34382 DOWNSTREAM Taf2	TF binding site mE1_TFBS_chinmo
3L	13364545	3L_13364545_SNP [dm3] 3L_13371445_SNP [dm6]	A	C	3.786e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26686115	3R_26686115_INS [dm3] 3R_30860393_INS [dm6]	A	AAGTGGTATGTCT...	3.786e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6776610	2R_6776610_SNP [dm3] 2R_10889105_SNP [dm6]	C	A	3.807e^-4	0.88	INTRON CG30020
3R	19764284	3R_19764284_SNP [dm3] 3R_23938562_SNP [dm6]	G	A	3.811e^-4	0.88	SPLICE_SITE_REGION Gdh INTRON Gdh	TF binding site mE1_TFBS_cad
2L	19560009	2L_19560009_SNP [dm3] 2L_19560009_SNP [dm6]	C	T	3.831e^-4	0.88	NON_SYNONYMOUS_CODING Tep5	TF binding site mE1_TFBS_sens
3R	17223883	3R_17223883_SNP [dm3] 3R_21398161_SNP [dm6]	T	G	3.831e^-4	0.88	NON_SYNONYMOUS_CODING CG6475
3R	17224011	3R_17224011_SNP [dm3] 3R_21398289_SNP [dm6]	A	G	3.831e^-4	0.88	SYNONYMOUS_CODING CG6475
3R	17224071	3R_17224071_SNP [dm3] 3R_21398349_SNP [dm6]	G	A	3.831e^-4	0.88	SYNONYMOUS_CODING CG6475
3R	19461770	3R_19461770_SNP [dm3] 3R_23636048_SNP [dm6]	T	C	3.831e^-4	0.88	INTRON CG31145
3R	21410221	3R_21410221_SNP [dm3] 3R_25584499_SNP [dm6]	A	G	3.831e^-4	0.88	UTR_5_PRIME msi INTRON msi
2L	10860898	2L_10860898_SNP [dm3] 2L_10860898_SNP [dm6]	G	A	3.835e^-4	0.88	NON_SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad
2R	17612668	2R_17612668_DEL [dm3] 2R_21725163_DEL [dm6]	TGAAAACTACTACT...	A	3.859e^-4	0.88	INTERGENIC
2R	14148466	2R_14148466_SNP [dm3] 2R_18260961_SNP [dm6]	A	G	3.901e^-4	0.88	INTERGENIC
2R	1693830	2R_1693830_SNP [dm3] 2R_5806325_SNP [dm6]	T	G	3.904e^-4	0.88	INTRON dpr12	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18784176	X_18784176_SNP [dm3] X_18890143_SNP [dm6]	C	T	4.033e^-4	0.88	SYNONYMOUS_CODING CG7358 UTR_3_PRIME CG7358	TF binding site BDTNP1_TFBS_dl
X	22043017	X_22043017_SNP [dm3] X_22641181_SNP [dm6]	C	A	4.039e^-4	0.88	INTERGENIC	transposable element FlyBase
X	22044420	X_22044420_SNP [dm3] X_22642584_SNP [dm6]	C	T	4.039e^-4	0.88	INTERGENIC
X	22048339	X_22048339_SNP [dm3] X_22646503_SNP [dm6]	T	C	4.039e^-4	0.88	INTERGENIC
3L	13364521	3L_13364521_INS [dm3] 3L_13371421_INS [dm6]	A	AGTA	4.049e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14558545	3R_14558545_SNP [dm3] 3R_18732823_SNP [dm6]	G	C	4.049e^-4	0.88	NON_SYNONYMOUS_CODING CG14302 DOWNSTREAM Mekk1 & 1 other
3L	14178566	3L_14178566_SNP [dm3] 3L_14185466_SNP [dm6]	G	T	4.085e^-4	0.88	DOWNSTREAM nan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10648737	3R_10648737_SNP [dm3] 3R_14823015_SNP [dm6]	C	A	4.085e^-4	0.88	INTRON btsz	TF binding site mE1_TFBS_bab1
3R	16811228	3R_16811228_SNP [dm3] 3R_20985506_SNP [dm6]	A	G	4.085e^-4	0.88	UPSTREAM Calx DOWNSTREAM CG43446 INTRON Calx
3R	16811245	3R_16811245_SNP [dm3] 3R_20985523_SNP [dm6]	G	T	4.085e^-4	0.88	UPSTREAM Calx DOWNSTREAM CG43446 INTRON Calx
3R	8180621	3R_8180621_SNP [dm3] 3R_12354899_SNP [dm6]	T	G	4.085e^-4	0.88	INTRON MBD-R2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1715643	3L_1715643_INS [dm3] 3L_1715643_INS [dm6]	T	TT	4.097e^-4	0.88	UTR_3_PRIME drpr DOWNSTREAM drpr & 1 other
3L	17822292	3L_17822292_SNP [dm3] 3L_17829192_SNP [dm6]	G	T	4.098e^-4	0.88	UTR_5_PRIME Grd
3R	10162776	3R_10162776_SNP [dm3] 3R_14337054_SNP [dm6]	T	C	4.098e^-4	0.88	INTRON NK7.1	TF binding site mE1_TFBS_kn
3R	10582196	3R_10582196_SNP [dm3] 3R_14756474_SNP [dm6]	T	G	4.118e^-4	0.88	INTRON jvl
2L	3247934	2L_3247934_INS [dm3] 2L_3247934_INS [dm6]	A	AA	4.258e^-4	0.88	INTERGENIC
3L	15102152	3L_15102152_DEL [dm3] 3L_15109052_DEL [dm6]	ATATAAA	A	4.264e^-4	0.88	UPSTREAM CR43971 INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl
3R	12737533	3R_12737533_SNP [dm3] 3R_16911811_SNP [dm6]	G	A	4.270e^-4	0.88	INTRON iab-8
3R	13697627	3R_13697627_SNP [dm3] 3R_17871905_SNP [dm6]	C	T	4.303e^-4	0.88	UTR_3_PRIME tinc DOWNSTREAM Rim	TF binding site mE1_TFBS_inv
3R	13697642	3R_13697642_SNP [dm3] 3R_17871920_SNP [dm6]	G	T	4.303e^-4	0.88	UTR_3_PRIME tinc DOWNSTREAM Rim	TF binding site mE1_TFBS_inv
3R	13697644	3R_13697644_SNP [dm3] 3R_17871922_SNP [dm6]	A	T	4.303e^-4	0.88	UTR_3_PRIME tinc DOWNSTREAM Rim	TF binding site mE1_TFBS_inv
3R	21656903	3R_21656903_SNP [dm3] 3R_25831181_SNP [dm6]	G	T	4.303e^-4	0.88	UPSTREAM Sfp96F & 1 other DOWNSTREAM Mst57Da INTERGENIC	regulatory region REDfly_CRMs
2L	18164522	2L_18164522_SNP [dm3] 2L_18164522_SNP [dm6]	T	G	4.338e^-4	0.88	INTRON CG42750
X	21094346	X_21094346_SNP [dm3] X_21223319_SNP [dm6]	A	T	4.369e^-4	0.88	INTRON CG32521	TF binding site mE1_TFBS_chinmo
2L	19253421	2L_19253421_SNP [dm3] 2L_19253421_SNP [dm6]	A	C	4.379e^-4	0.88	INTERGENIC
2L	19321684	2L_19321684_SNP [dm3] 2L_19321684_SNP [dm6]	T	C	4.379e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19321685	2L_19321685_SNP [dm3] 2L_19321685_SNP [dm6]	G	A	4.379e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14552114	3R_14552114_SNP [dm3] 3R_18726392_SNP [dm6]	A	G	4.379e^-4	0.88	UTR_5_PRIME CG7714 INTRON Cha
3R	14555227	3R_14555227_SNP [dm3] 3R_18729505_SNP [dm6]	G	A	4.379e^-4	0.88	SYNONYMOUS_CODING Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14555299	3R_14555299_SNP [dm3] 3R_18729577_SNP [dm6]	A	T	4.379e^-4	0.88	INTRON Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14555307	3R_14555307_SNP [dm3] 3R_18729585_SNP [dm6]	A	T	4.379e^-4	0.88	INTRON Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14555308	3R_14555308_SNP [dm3] 3R_18729586_SNP [dm6]	A	T	4.379e^-4	0.88	INTRON Cha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16967247	3R_16967247_SNP [dm3] 3R_21141525_SNP [dm6]	C	T	4.398e^-4	0.88	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8370716	2R_8370716_SNP [dm3] 2R_12483211_SNP [dm6]	G	A	4.418e^-4	0.88	INTRON Dh44-R2
2R	8370717	2R_8370717_SNP [dm3] 2R_12483212_SNP [dm6]	G	A	4.418e^-4	0.88	INTRON Dh44-R2
X	6637753	X_6637753_SNP [dm3] X_6743720_SNP [dm6]	A	T	4.438e^-4	0.88	UPSTREAM snoRNA:Psi28S-3436a & 2 others DOWNSTREAM tRNA:CR32740 INTRON RpL17 EXON snoRNA:Psi28S-1232	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	12887501	3R_12887501_SNP [dm3] 3R_17061779_SNP [dm6]	C	T	4.439e^-4	0.88	INTRON Dad	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3263454	2L_3263454_SNP [dm3] 2L_3263454_SNP [dm6]	C	T	4.458e^-4	0.88	DOWNSTREAM CR45706 INTERGENIC
2L	3263457	2L_3263457_INS [dm3] 2L_3263457_INS [dm6]	T	TCCC	4.458e^-4	0.88	DOWNSTREAM CR45706 INTERGENIC
2L	3263459	2L_3263459_INS [dm3] 2L_3263459_INS [dm6]	G	GGC	4.458e^-4	0.88	DOWNSTREAM CR45706 INTERGENIC
2L	3263466	2L_3263466_INS [dm3] 2L_3263466_INS [dm6]	T	TATTTTTTGTACGTTTTCGA...	4.458e^-4	0.88	DOWNSTREAM CR45706 INTERGENIC
2R	6042760	2R_6042760_SNP [dm3] 2R_10155255_SNP [dm6]	C	T	4.458e^-4	0.88	UPSTREAM KCNQ DOWNSTREAM CR45133 & 1 other INTRON KCNQ
3L	11638439	3L_11638439_SNP [dm3] 3L_11645339_SNP [dm6]	A	G	4.467e^-4	0.88	SYNONYMOUS_CODING CG6071 DOWNSTREAM RIOK1
3L	11638440	3L_11638440_SNP [dm3] 3L_11645340_SNP [dm6]	C	A	4.467e^-4	0.88	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM RIOK1
2L	6814255	2L_6814255_SNP [dm3] 2L_6814255_SNP [dm6]	G	C	4.473e^-4	0.88	INTERGENIC
3L	430045	3L_430045_SNP [dm3] 3L_430045_SNP [dm6]	T	C	4.502e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	430047	3L_430047_SNP [dm3] 3L_430047_SNP [dm6]	T	A	4.502e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	18789522	3L_18789522_SNP [dm3] 3L_18796422_SNP [dm6]	T	A	4.545e^-4	0.88	INTRON ftz-f1
3L	18789533	3L_18789533_SNP [dm3] 3L_18796433_SNP [dm6]	G	A	4.545e^-4	0.88	INTRON ftz-f1
2L	2804426	2L_2804426_INS [dm3] 2L_2804426_INS [dm6]	G	TA	4.563e^-4	0.88	UPSTREAM daw INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9214896	2L_9214896_SNP [dm3] 2L_9214896_SNP [dm6]	T	C	4.563e^-4	0.88	INTRON tai
2L	9446357	2L_9446357_SNP [dm3] 2L_9446357_SNP [dm6]	T	A	4.563e^-4	0.88	INTRON numb	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	11197628	X_11197628_SNP [dm3] X_11303595_SNP [dm6]	C	G	4.584e^-4	0.88	UPSTREAM CG44422 INTERGENIC
2R	18795941	2R_18795941_SNP [dm3] 2R_22908418_SNP [dm6]	C	T	4.608e^-4	0.88	INTRON nahoda
2R	18795943	2R_18795943_SNP [dm3] 2R_22908420_SNP [dm6]	T	C	4.608e^-4	0.88	INTRON nahoda
2R	18795945	2R_18795945_SNP [dm3] 2R_22908422_SNP [dm6]	A	G	4.608e^-4	0.88	INTRON nahoda
X	19884700	X_19884700_SNP [dm3] X_19990667_SNP [dm6]	A	G	4.635e^-4	0.88	INTERGENIC
3L	19637139	3L_19637139_SNP [dm3] 3L_19644039_SNP [dm6]	T	C	4.642e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6332454	2L_6332454_SNP [dm3] 2L_6332454_SNP [dm6]	C	A	4.689e^-4	0.88	UTR_3_PRIME PDZ-GEF DOWNSTREAM PDZ-GEF & 1 other
3L	11137725	3L_11137725_SNP [dm3] 3L_11144625_SNP [dm6]	C	T	4.715e^-4	0.88	INTRON CG32082	TF binding site mE1_TFBS_HSA
3L	11137728	3L_11137728_SNP [dm3] 3L_11144628_SNP [dm6]	A	C	4.715e^-4	0.88	INTRON CG32082
3L	11137729	3L_11137729_SNP [dm3] 3L_11144629_SNP [dm6]	C	G	4.715e^-4	0.88	INTRON CG32082
2L	5062123	2L_5062123_SNP [dm3] 2L_5062123_SNP [dm6]	T	C	4.729e^-4	0.88	UPSTREAM qtc DOWNSTREAM CR43820 INTRON qtc
3L	3469787	3L_3469787_SNP [dm3] 3L_3469787_SNP [dm6]	T	G	4.729e^-4	0.88	INTRON CG14971
2R	12977169	2R_12977169_SNP [dm3] 2R_17089664_SNP [dm6]	T	A	4.741e^-4	0.88	SPLICE_SITE_REGION Sply INTRON Sply	TF binding site mE1_TFBS_sens
2R	12977170	2R_12977170_SNP [dm3] 2R_17089665_SNP [dm6]	A	G	4.741e^-4	0.88	SPLICE_SITE_REGION Sply INTRON Sply	TF binding site mE1_TFBS_sens
X	16782864	X_16782864_SNP [dm3] X_16888831_SNP [dm6]	C	A	4.741e^-4	0.88	UPSTREAM CG13002 DOWNSTREAM CR43768 & 1 other INTERGENIC
2R	6827616	2R_6827616_SNP [dm3] 2R_10940111_SNP [dm6]	T	C	4.770e^-4	0.88	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
2R	6827617	2R_6827617_DEL [dm3] 2R_10940112_DEL [dm6]	TCA	T	4.770e^-4	0.88	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C
3L	17823966	3L_17823966_SNP [dm3] 3L_17830866_SNP [dm6]	T	C	4.770e^-4	0.88	INTRON Grd
3R	14307698	3R_14307698_SNP [dm3] 3R_18481976_SNP [dm6]	A	G	4.770e^-4	0.88	INTRON fru
X	6377262	X_6377262_DEL [dm3] X_6483229_DEL [dm6]	GAT	G	4.770e^-4	0.88	INTRON CG42340
X	18843154	X_18843154_SNP [dm3] X_18949121_SNP [dm6]	A	T	4.890e^-4	0.88	INTRON CG43759	TF binding site mE1_TFBS_cad
2L	11609626	2L_11609626_SNP [dm3] 2L_11609626_SNP [dm6]	T	C	4.900e^-4	0.88	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11609627	2L_11609627_SNP [dm3] 2L_11609627_SNP [dm6]	G	A	4.900e^-4	0.88	DOWNSTREAM spag4 INTRON kek2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1544416	2L_1544416_SNP [dm3] 2L_1544416_SNP [dm6]	A	T	4.900e^-4	0.88	INTERGENIC
2L	1544441	2L_1544441_SNP [dm3] 2L_1544441_SNP [dm6]	T	G	4.900e^-4	0.88	INTERGENIC
2L	1544450	2L_1544450_SNP [dm3] 2L_1544450_SNP [dm6]	C	T	4.900e^-4	0.88	INTERGENIC
2L	1544464	2L_1544464_INS [dm3] 2L_1544464_INS [dm6]	T	TT	4.900e^-4	0.88	INTERGENIC
2L	19097142	2L_19097142_SNP [dm3] 2L_19097142_SNP [dm6]	C	T	4.900e^-4	0.88	INTRON Lim3
2L	7284995	2L_7284995_SNP [dm3] 2L_7284995_SNP [dm6]	T	G	4.900e^-4	0.88	INTERGENIC
X	9107258	X_9107258_INS [dm3] X_9213225_INS [dm6]	A	ATGTA	4.900e^-4	0.88	INTERGENIC
3R	15060985	3R_15060985_SNP [dm3] 3R_19235263_SNP [dm6]	G	T	4.921e^-4	0.88	SPLICE_SITE_REGION unc79 INTRON unc79
3R	15377529	3R_15377529_SNP [dm3] 3R_19551807_SNP [dm6]	T	G	4.921e^-4	0.88	INTRON Dys
3L	4746807	3L_4746807_SNP [dm3] 3L_4746807_SNP [dm6]	T	C	4.924e^-4	0.88	UPSTREAM CR43882 INTRON RhoGEF64C
X	13933820	X_13933820_SNP [dm3] X_14039787_SNP [dm6]	T	C	4.924e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13933862	X_13933862_SNP [dm3] X_14039829_SNP [dm6]	A	G	4.924e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19039350	X_19039350_SNP [dm3] X_19145317_SNP [dm6]	A	G	4.924e^-4	0.88	INTRON RhoGAP18B
3R	25213787	3R_25213787_SNP [dm3] 3R_29388065_SNP [dm6]	G	A	4.928e^-4	0.88	INTRON Ptp99A
3R	26083619	3R_26083619_SNP [dm3] 3R_30257897_SNP [dm6]	A	C	4.928e^-4	0.88	INTERGENIC
X	6377273	X_6377273_SNP [dm3] X_6483240_SNP [dm6]	A	G	5.029e^-4	0.88	INTRON CG42340
3L	6318361	3L_6318361_SNP [dm3] 3L_6325261_SNP [dm6]	A	G	5.037e^-4	0.88	UPSTREAM Or65b INTERGENIC
3R	11102301	3R_11102301_SNP [dm3] 3R_15276579_SNP [dm6]	T	G	5.041e^-4	0.88	UTR_3_PRIME MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12929229	3R_12929229_SNP [dm3] 3R_17103507_SNP [dm6]	A	T	5.046e^-4	0.88	INTRON cher
2R	9779001	2R_9779001_SNP [dm3] 2R_13891496_SNP [dm6]	A	G	5.067e^-4	0.88	SYNONYMOUS_CODING shot INTRON shot
2R	6915166	2R_6915166_SNP [dm3] 2R_11027661_SNP [dm6]	G	C	5.083e^-4	0.88	INTRON luna
X	12614661	X_12614661_SNP [dm3] X_12720628_SNP [dm6]	A	C	5.083e^-4	0.88	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5991916	3L_5991916_SNP [dm3] 3L_5998816_SNP [dm6]	A	C	5.091e^-4	0.88	INTRON PVRAP
3L	6197148	3L_6197148_SNP [dm3] 3L_6204048_SNP [dm6]	G	T	5.091e^-4	0.88	UTR_3_PRIME LanA DOWNSTREAM CG8219	TF binding site mE1_TFBS_cad
X	20329346	X_20329346_SNP [dm3] X_20458319_SNP [dm6]	A	G	5.123e^-4	0.88	INTRON CG32506	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15391686	3L_15391686_SNP [dm3] 3L_15398586_SNP [dm6]	A	G	5.129e^-4	0.88	INTERGENIC
3L	1212485	3L_1212485_SNP [dm3] 3L_1212485_SNP [dm6]	A	T	5.166e^-4	0.88	UPSTREAM LysE INTRON mwh	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	1212499	3L_1212499_SNP [dm3] 3L_1212499_SNP [dm6]	C	G	5.166e^-4	0.88	UPSTREAM LysE INTRON mwh	TF binding site mE1_TFBS_sens
X	6137855	X_6137855_SNP [dm3] X_6243822_SNP [dm6]	A	G	5.208e^-4	0.88	SPLICE_SITE_REGION Rbcn-3A INTRON Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7820519	3L_7820519_SNP [dm3] 3L_7827419_SNP [dm6]	T	G	5.265e^-4	0.88	INTRON Pdp1
3L	9323123	3L_9323123_SNP [dm3] 3L_9330023_SNP [dm6]	A	G	5.301e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8238623	3R_8238623_SNP [dm3] 3R_12412901_SNP [dm6]	A	G	5.355e^-4	0.88	SYNONYMOUS_CODING Dip-C UPSTREAM pps DOWNSTREAM snmRNA:649	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8238653	3R_8238653_SNP [dm3] 3R_12412931_SNP [dm6]	A	G	5.355e^-4	0.88	SYNONYMOUS_CODING Dip-C UPSTREAM pps DOWNSTREAM snmRNA:649	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22034669	2L_22034669_SNP [dm3] 2L_22034669_SNP [dm6]	T	A	5.401e^-4	0.88	DOWNSTREAM CR45335 INTERGENIC
2R	11967212	2R_11967212_SNP [dm3] 2R_16079707_SNP [dm6]	T	C	5.401e^-4	0.88	UPSTREAM CR43415 INTERGENIC
2R	12112538	2R_12112538_SNP [dm3] 2R_16225033_SNP [dm6]	T	G	5.401e^-4	0.88	INTRON CG15706
2R	16298524	2R_16298524_SNP [dm3] 2R_20411019_SNP [dm6]	A	C	5.401e^-4	0.88	INTERGENIC
2R	7315603	2R_7315603_SNP [dm3] 2R_11428098_SNP [dm6]	A	G	5.401e^-4	0.88	UPSTREAM Drip INTRON Drip
2R	7827865	2R_7827865_SNP [dm3] 2R_11940360_SNP [dm6]	T	C	5.401e^-4	0.88	INTRON CG13188
3L	16623957	3L_16623957_SNP [dm3] 3L_16630857_SNP [dm6]	A	G	5.401e^-4	0.88	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5858032	3L_5858032_SNP [dm3] 3L_5864932_SNP [dm6]	T	C	5.401e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15400695	3R_15400695_SNP [dm3] 3R_19574973_SNP [dm6]	A	G	5.401e^-4	0.88	INTRON Dys
3R	15400703	3R_15400703_SNP [dm3] 3R_19574981_SNP [dm6]	C	T	5.401e^-4	0.88	INTRON Dys
3R	15400723	3R_15400723_SNP [dm3] 3R_19575001_SNP [dm6]	A	T	5.401e^-4	0.88	INTRON Dys
3R	15400772	3R_15400772_SNP [dm3] 3R_19575050_SNP [dm6]	C	T	5.401e^-4	0.88	INTRON Dys
3R	16957701	3R_16957701_SNP [dm3] 3R_21131979_SNP [dm6]	T	C	5.401e^-4	0.88	SYNONYMOUS_CODING Ice2 DOWNSTREAM CG7009	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	16976104	3R_16976104_DEL [dm3] 3R_21150382_DEL [dm6]	AA	A	5.401e^-4	0.88	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
3R	16976109	3R_16976109_SNP [dm3] 3R_21150387_SNP [dm6]	T	G	5.401e^-4	0.88	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
3R	16983550	3R_16983550_SNP [dm3] 3R_21157828_SNP [dm6]	C	G	5.401e^-4	0.88	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17115377	3R_17115377_SNP [dm3] 3R_21289655_SNP [dm6]	G	T	5.401e^-4	0.88	INTRON SIFaR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17115428	3R_17115428_SNP [dm3] 3R_21289706_SNP [dm6]	A	T	5.401e^-4	0.88	INTRON SIFaR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17115456	3R_17115456_INS [dm3] 3R_21289734_INS [dm6]	T	TT	5.401e^-4	0.88	INTRON SIFaR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17115472	3R_17115472_INS [dm3] 3R_21289750_INS [dm6]	T	TGATGTGACTAT...	5.401e^-4	0.88	INTRON SIFaR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17115527	3R_17115527_SNP [dm3] 3R_21289805_SNP [dm6]	T	C	5.401e^-4	0.88	INTRON SIFaR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17245055	3R_17245055_SNP [dm3] 3R_21419333_SNP [dm6]	T	G	5.401e^-4	0.88	INTRON lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26371866	3R_26371866_SNP [dm3] 3R_30546144_SNP [dm6]	G	T	5.401e^-4	0.88	UPSTREAM tmod INTRON tmod
X	11829687	X_11829687_SNP [dm3] X_11935654_SNP [dm6]	G	A	5.401e^-4	0.88	UTR_3_PRIME cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	11829697	X_11829697_SNP [dm3] X_11935664_SNP [dm6]	C	A	5.401e^-4	0.88	UTR_3_PRIME cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	12895996	X_12895996_SNP [dm3] X_13001963_SNP [dm6]	A	C	5.401e^-4	0.88	INTRON rad
X	15272164	X_15272164_SNP [dm3] X_15378131_SNP [dm6]	A	G	5.401e^-4	0.88	INTRON acj6
X	16795155	X_16795155_SNP [dm3] X_16901122_SNP [dm6]	T	C	5.401e^-4	0.88	DOWNSTREAM CR44754 INTERGENIC
X	6631686	X_6631686_SNP [dm3] X_6737653_SNP [dm6]	T	C	5.401e^-4	0.88	INTRON CG3168
X	7426428	X_7426428_SNP [dm3] X_7532395_SNP [dm6]	A	C	5.401e^-4	0.88	INTRON CG32719
X	7426565	X_7426565_SNP [dm3] X_7532532_SNP [dm6]	A	T	5.401e^-4	0.88	INTRON CG32719
2R	15082728	2R_15082728_SNP [dm3] 2R_19195223_SNP [dm6]	C	A	5.432e^-4	0.88	INTRON hppy
2R	20527784	2R_20527784_SNP [dm3] 2R_24640261_SNP [dm6]	G	A	5.455e^-4	0.88	NON_SYNONYMOUS_CODING CG3640 DOWNSTREAM CG4781	TF binding site mE1_TFBS_chinmo
2R	14148331	2R_14148331_SNP [dm3] 2R_18260826_SNP [dm6]	A	C	5.503e^-4	0.88	INTERGENIC
2R	14148349	2R_14148349_SNP [dm3] 2R_18260844_SNP [dm6]	G	A	5.503e^-4	0.88	INTERGENIC
2R	14148351	2R_14148351_SNP [dm3] 2R_18260846_SNP [dm6]	C	G	5.503e^-4	0.88	INTERGENIC
2R	9779007	2R_9779007_SNP [dm3] 2R_13891502_SNP [dm6]	T	C	5.503e^-4	0.88	SYNONYMOUS_CODING shot INTRON shot
2R	9779058	2R_9779058_SNP [dm3] 2R_13891553_SNP [dm6]	A	G	5.503e^-4	0.88	SYNONYMOUS_CODING shot INTRON shot
2R	9779070	2R_9779070_SNP [dm3] 2R_13891565_SNP [dm6]	A	G	5.503e^-4	0.88	SYNONYMOUS_CODING shot INTRON shot
2R	9779154	2R_9779154_SNP [dm3] 2R_13891649_SNP [dm6]	T	A	5.503e^-4	0.88	SYNONYMOUS_CODING shot INTRON shot
X	19732967	X_19732967_SNP [dm3] X_19838934_SNP [dm6]	T	A	5.503e^-4	0.88	INTRON pico	TF binding site mE1_TFBS_sens
2L	1543980	2L_1543980_SNP [dm3] 2L_1543980_SNP [dm6]	T	A	5.517e^-4	0.88	INTERGENIC
X	13506470	X_13506470_SNP [dm3] X_13612437_SNP [dm6]	A	G	5.517e^-4	0.88	SYNONYMOUS_CODING BthD UPSTREAM Ndc80 DOWNSTREAM tth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	8757454	3R_8757454_SNP [dm3] 3R_12931732_SNP [dm6]	T	C	5.585e^-4	0.88	SYNONYMOUS_CODING beat-Vb UPSTREAM CR44236
2L	14532106	2L_14532106_SNP [dm3] 2L_14532106_SNP [dm6]	C	T	5.595e^-4	0.88	DOWNSTREAM CR44852 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18378257	2R_18378257_DEL [dm3] 2R_22490752_DEL [dm6]	TTTC	AA	5.595e^-4	0.88	INTRON CG4554
2R	7458116	2R_7458116_SNP [dm3] 2R_11570611_SNP [dm6]	C	G	5.595e^-4	0.88	INTERGENIC
2R	7458121	2R_7458121_SNP [dm3] 2R_11570616_SNP [dm6]	T	C	5.595e^-4	0.88	INTERGENIC
3L	9887126	3L_9887126_SNP [dm3] 3L_9894026_SNP [dm6]	T	C	5.595e^-4	0.88	NON_SYNONYMOUS_CODING CG14164 UTR_5_PRIME CG6709 UPSTREAM CG6709 DOWNSTREAM CalpB & 1 other
3R	3815564	3R_3815564_SNP [dm3] 3R_7989842_SNP [dm6]	A	C	5.595e^-4	0.88	INTRON CG2781
X	4313824	X_4313824_SNP [dm3] X_4419791_SNP [dm6]	T	A	5.595e^-4	0.88	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	6332360	2L_6332360_SNP [dm3] 2L_6332360_SNP [dm6]	C	T	5.618e^-4	0.88	UTR_3_PRIME PDZ-GEF DOWNSTREAM PDZ-GEF & 1 other
3R	17285927	3R_17285927_SNP [dm3] 3R_21460205_SNP [dm6]	A	C	5.622e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9730713	X_9730713_SNP [dm3] X_9836680_SNP [dm6]	G	A	5.639e^-4	0.88	SYNONYMOUS_CODING CG32698
X	9730722	X_9730722_SNP [dm3] X_9836689_SNP [dm6]	T	C	5.639e^-4	0.88	SYNONYMOUS_CODING CG32698
2R	12967619	2R_12967619_SNP [dm3] 2R_17080114_SNP [dm6]	A	G	5.674e^-4	0.88	INTRON CG30460
3L	1721028	3L_1721028_SNP [dm3] 3L_1721028_SNP [dm6]	G	A	5.674e^-4	0.88	SYNONYMOUS_CODING CG18171 INTRON drpr
X	8740876	X_8740876_SNP [dm3] X_8846843_SNP [dm6]	A	G	5.674e^-4	0.88	INTRON CG12075
X	14071293	X_14071293_SNP [dm3] X_14177260_SNP [dm6]	A	C	5.679e^-4	0.88	NON_SYNONYMOUS_CODING CG11581	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16830774	X_16830774_SNP [dm3] X_16936741_SNP [dm6]	G	A	5.679e^-4	0.88	UTR_3_PRIME CG4928 DOWNSTREAM CG4928
2R	17718551	2R_17718551_SNP [dm3] 2R_21831046_SNP [dm6]	A	G	5.680e^-4	0.88	INTRON CG13492
2R	17718568	2R_17718568_SNP [dm3] 2R_21831063_SNP [dm6]	T	A	5.680e^-4	0.88	INTRON CG13492
3L	4629256	3L_4629256_DEL [dm3] 3L_4629256_DEL [dm6]	GCCCCTAC	G	5.735e^-4	0.88	UTR_3_PRIME Rpd3 DOWNSTREAM axo
2L	6332471	2L_6332471_SNP [dm3] 2L_6332471_SNP [dm6]	A	T	5.740e^-4	0.88	UTR_3_PRIME PDZ-GEF DOWNSTREAM PDZ-GEF & 1 other
3L	16702943	3L_16702943_SNP [dm3] 3L_16709843_SNP [dm6]	G	A	5.740e^-4	0.88	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	10357516	3R_10357516_SNP [dm3] 3R_14531794_SNP [dm6]	C	T	5.772e^-4	0.88	INTRON Pde6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11054102	2L_11054102_SNP [dm3] 2L_11054102_SNP [dm6]	A	T	5.819e^-4	0.88	INTRON Samuel
3R	21328306	3R_21328306_SNP [dm3] 3R_25502584_SNP [dm6]	T	C	5.819e^-4	0.88	UPSTREAM CR43457 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16725541	3R_16725541_SNP [dm3] 3R_20899819_SNP [dm6]	G	A	5.833e^-4	0.88	INTERGENIC
3R	16725557	3R_16725557_SNP [dm3] 3R_20899835_SNP [dm6]	C	T	5.833e^-4	0.88	INTERGENIC
3R	16725575	3R_16725575_SNP [dm3] 3R_20899853_SNP [dm6]	C	A	5.833e^-4	0.88	INTERGENIC
X	18816897	X_18816897_SNP [dm3] X_18922864_SNP [dm6]	T	C	5.833e^-4	0.88	INTERGENIC
3L	2669602	3L_2669602_SNP [dm3] 3L_2669602_SNP [dm6]	A	G	5.845e^-4	0.88	INTRON Fife
3R	6777953	3R_6777953_SNP [dm3] 3R_10952231_SNP [dm6]	G	A	5.925e^-4	0.88	DOWNSTREAM Tengl4 INTERGENIC
2R	5872920	2R_5872920_SNP [dm3] 2R_9985415_SNP [dm6]	C	T	5.937e^-4	0.88	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6014841	X_6014841_SNP [dm3] X_6120808_SNP [dm6]	A	G	5.937e^-4	0.88	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
3R	23119776	3R_23119776_SNP [dm3] 3R_27294054_SNP [dm6]	C	T	5.942e^-4	0.88	DOWNSTREAM CG3339 INTERGENIC
3R	16966528	3R_16966528_SNP [dm3] 3R_21140806_SNP [dm6]	C	T	6.003e^-4	0.88	UTR_5_PRIME SNF4Agamma DOWNSTREAM meigo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	15069348	2R_15069348_INS [dm3] 2R_19181843_INS [dm6]	A	AA	6.025e^-4	0.88	INTRON hppy
X	11353493	X_11353493_SNP [dm3] X_11459460_SNP [dm6]	G	T	6.040e^-4	0.88	UPSTREAM CG43155 DOWNSTREAM HP5 INTERGENIC
2R	5116246	2R_5116246_SNP [dm3] 2R_9228741_SNP [dm6]	T	A	6.050e^-4	0.88	SYNONYMOUS_CODING hig UTR_3_PRIME hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7993183	3L_7993183_INS [dm3] 3L_8000083_INS [dm6]	C	CGAAC	6.088e^-4	0.88	INTRON nmo
3L	15509177	3L_15509177_SNP [dm3] 3L_15516077_SNP [dm6]	C	T	6.102e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	15509181	3L_15509181_SNP [dm3] 3L_15516081_SNP [dm6]	G	A	6.102e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	12897158	X_12897158_DEL [dm3] X_13003125_DEL [dm6]	ACG	A	6.121e^-4	0.88	DOWNSTREAM CG15719 INTRON rad
X	22041973	X_22041973_DEL [dm3] X_22640137_DEL [dm6]	CTCTTTTATTACGATACCTA...	C	6.139e^-4	0.88	INTERGENIC	transposable element FlyBase
X	22042807	X_22042807_DEL [dm3] X_22640971_DEL [dm6]	AA	T	6.139e^-4	0.88	INTERGENIC	transposable element FlyBase
X	22044138	X_22044138_SNP [dm3] X_22642302_SNP [dm6]	A	C	6.139e^-4	0.88	INTERGENIC	transposable element FlyBase
X	22047973	X_22047973_SNP [dm3] X_22646137_SNP [dm6]	A	C	6.139e^-4	0.88	INTERGENIC
X	22048378	X_22048378_SNP [dm3] X_22646542_SNP [dm6]	T	A	6.139e^-4	0.88	INTERGENIC
X	4980825	X_4980825_SNP [dm3] X_5086792_SNP [dm6]	T	A	6.164e^-4	0.88	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	16240209	3R_16240209_SNP [dm3] 3R_20414487_SNP [dm6]	T	A	6.169e^-4	0.88	INTRON Gfrl
3R	16243655	3R_16243655_SNP [dm3] 3R_20417933_SNP [dm6]	A	C	6.169e^-4	0.88	INTRON Gfrl
3L	11438113	3L_11438113_SNP [dm3] 3L_11445013_SNP [dm6]	C	G	6.221e^-4	0.88	UPSTREAM CG7557 EXON CR44549
3L	11438121	3L_11438121_SNP [dm3] 3L_11445021_SNP [dm6]	C	G	6.221e^-4	0.88	UPSTREAM CG7557 EXON CR44549
3R	12910984	3R_12910984_SNP [dm3] 3R_17085262_SNP [dm6]	C	T	6.223e^-4	0.88	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12910996	3R_12910996_DEL [dm3] 3R_17085274_DEL [dm6]	AGGAAAATAAATGAATA...	A	6.223e^-4	0.88	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13364513	3L_13364513_SNP [dm3] 3L_13371413_SNP [dm6]	C	A	6.285e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5243222	3R_5243222_DEL [dm3] 3R_9417500_DEL [dm6]	TTAAGTTTTGAATTTAT...	T	6.316e^-4	0.88	UPSTREAM ps DOWNSTREAM alpha-Man-II INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	11058537	3L_11058537_SNP [dm3] 3L_11065437_SNP [dm6]	A	T	6.338e^-4	0.88	NON_SYNONYMOUS_CODING SuUR UTR_3_PRIME CG45101 UPSTREAM CG32075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	25546679	3R_25546679_SNP [dm3] 3R_29720957_SNP [dm6]	G	A	6.360e^-4	0.88	INTRON CG15506
X	22140606	X_22140606_SNP [dm3] X_22738770_SNP [dm6]	A	C	6.368e^-4	0.88	INTRON CR44997	transposable element FlyBase
3R	25005562	3R_25005562_SNP [dm3] 3R_29179840_SNP [dm6]	C	T	6.377e^-4	0.88	INTRON CG14509
3R	14556386	3R_14556386_SNP [dm3] 3R_18730664_SNP [dm6]	T	A	6.395e^-4	0.88	INTRON Cha
3R	14556440	3R_14556440_SNP [dm3] 3R_18730718_SNP [dm6]	T	A	6.395e^-4	0.88	INTRON Cha
3R	16893373	3R_16893373_SNP [dm3] 3R_21067651_SNP [dm6]	T	C	6.453e^-4	0.88	INTRON AnxB9	TF binding site mE1_TFBS_HSA
3L	14080608	3L_14080608_DEL [dm3] 3L_14087508_DEL [dm6]	TAT	T	6.483e^-4	0.88	INTERGENIC
3R	11091314	3R_11091314_SNP [dm3] 3R_15265592_SNP [dm6]	C	T	6.493e^-4	0.88	START_GAINED Oscp UTR_5_PRIME Oscp DOWNSTREAM Set	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	19904883	X_19904883_INS [dm3] X_20010850_INS [dm6]	A	AAAAACA	6.519e^-4	0.88	INTRON Dop2R
2L	10272978	2L_10272978_SNP [dm3] 2L_10272978_SNP [dm6]	T	A	6.601e^-4	0.88	UPSTREAM trk INTRON Utx
2L	12638130	2L_12638130_SNP [dm3] 2L_12638130_SNP [dm6]	G	A	6.601e^-4	0.88	INTRON Ref2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15117096	2L_15117096_SNP [dm3] 2L_15117096_SNP [dm6]	T	C	6.601e^-4	0.88	INTRON stc	TF binding site mE1_TFBS_chinmo
2L	15117155	2L_15117155_SNP [dm3] 2L_15117155_SNP [dm6]	C	T	6.601e^-4	0.88	SYNONYMOUS_CODING stc
2L	16624830	2L_16624830_SNP [dm3] 2L_16624830_SNP [dm6]	C	G	6.601e^-4	0.88	INTRON CG42389
2L	16624861	2L_16624861_SNP [dm3] 2L_16624861_SNP [dm6]	G	C	6.601e^-4	0.88	INTRON CG42389
2L	1728323	2L_1728323_SNP [dm3] 2L_1728323_SNP [dm6]	C	T	6.601e^-4	0.88	UTR_5_PRIME Eno UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1729014	2L_1729014_SNP [dm3] 2L_1729014_SNP [dm6]	A	G	6.601e^-4	0.88	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1729092	2L_1729092_SNP [dm3] 2L_1729092_SNP [dm6]	C	T	6.601e^-4	0.88	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1729113	2L_1729113_SNP [dm3] 2L_1729113_SNP [dm6]	C	T	6.601e^-4	0.88	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1729142	2L_1729142_SNP [dm3] 2L_1729142_SNP [dm6]	G	C	6.601e^-4	0.88	NON_SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1729185	2L_1729185_SNP [dm3] 2L_1729185_SNP [dm6]	C	T	6.601e^-4	0.88	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1729203	2L_1729203_SNP [dm3] 2L_1729203_SNP [dm6]	A	C	6.601e^-4	0.88	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1729260	2L_1729260_SNP [dm3] 2L_1729260_SNP [dm6]	A	G	6.601e^-4	0.88	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1729261	2L_1729261_SNP [dm3] 2L_1729261_SNP [dm6]	C	T	6.601e^-4	0.88	SYNONYMOUS_CODING Rrp40 UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18770162	2L_18770162_SNP [dm3] 2L_18770162_SNP [dm6]	T	A	6.601e^-4	0.88	INTRON ham
2L	19324916	2L_19324916_SNP [dm3] 2L_19324916_SNP [dm6]	T	C	6.601e^-4	0.88	EXON CR45700	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	19330938	2L_19330938_SNP [dm3] 2L_19330938_SNP [dm6]	A	G	6.601e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19367892	2L_19367892_SNP [dm3] 2L_19367892_SNP [dm6]	C	A	6.601e^-4	0.88	INTERGENIC
2L	5579566	2L_5579566_DEL [dm3] 2L_5579566_DEL [dm6]	AGA	A	6.601e^-4	0.88	DOWNSTREAM CG14011 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6782753	2L_6782753_SNP [dm3] 2L_6782753_SNP [dm6]	G	C	6.601e^-4	0.88	INTRON nrv1
2L	6782816	2L_6782816_SNP [dm3] 2L_6782816_SNP [dm6]	T	C	6.601e^-4	0.88	INTRON nrv1
2L	6782837	2L_6782837_SNP [dm3] 2L_6782837_SNP [dm6]	A	G	6.601e^-4	0.88	INTRON nrv1
2L	9444736	2L_9444736_SNP [dm3] 2L_9444736_SNP [dm6]	C	A	6.601e^-4	0.88	INTRON numb
2L	966042	2L_966042_SNP [dm3] 2L_966042_SNP [dm6]	A	T	6.601e^-4	0.88	INTERGENIC
2R	7277991	2R_7277991_SNP [dm3] 2R_11390486_SNP [dm6]	T	G	6.601e^-4	0.88	INTRON sprt
X	8406633	X_8406633_SNP [dm3] X_8512600_SNP [dm6]	C	T	6.609e^-4	0.88	SYNONYMOUS_CODING CG33181
2L	1623634	2L_1623634_SNP [dm3] 2L_1623634_SNP [dm6]	C	T	6.613e^-4	0.88	UPSTREAM CR44603 EXON CR44603
2L	9229144	2L_9229144_SNP [dm3] 2L_9229144_SNP [dm6]	C	A	6.613e^-4	0.88	INTRON tai
2L	9229157	2L_9229157_SNP [dm3] 2L_9229157_SNP [dm6]	A	G	6.613e^-4	0.88	INTRON tai
2L	9229158	2L_9229158_SNP [dm3] 2L_9229158_SNP [dm6]	A	T	6.613e^-4	0.88	INTRON tai
2L	9229160	2L_9229160_SNP [dm3] 2L_9229160_SNP [dm6]	A	T	6.613e^-4	0.88	INTRON tai
3L	7157921	3L_7157921_SNP [dm3] 3L_7164821_SNP [dm6]	G	A	6.662e^-4	0.88	SYNONYMOUS_CODING Dscam2
3R	2357320	3R_2357320_DEL [dm3] 3R_6531598_DEL [dm6]	CCC	C	6.665e^-4	0.88	UTR_3_PRIME dpr11
X	5184932	X_5184932_SNP [dm3] X_5290899_SNP [dm6]	T	C	6.673e^-4	0.88	INTERGENIC
X	5184912	X_5184912_SNP [dm3] X_5290879_SNP [dm6]	A	T	6.690e^-4	0.88	INTERGENIC
3R	23454306	3R_23454306_SNP [dm3] 3R_27628584_SNP [dm6]	G	C	6.741e^-4	0.88	INTRON Tusp
3R	2596729	3R_2596729_SNP [dm3] 3R_6771007_SNP [dm6]	G	T	6.741e^-4	0.88	INTRON CR42721
3R	4525963	3R_4525963_SNP [dm3] 3R_8700241_SNP [dm6]	G	T	6.741e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3R	8158812	3R_8158812_SNP [dm3] 3R_12333090_SNP [dm6]	A	T	6.741e^-4	0.88	INTERGENIC
3R	9591615	3R_9591615_SNP [dm3] 3R_13765893_SNP [dm6]	G	C	6.741e^-4	0.88	INTRON CG9312
2L	7587475	2L_7587475_SNP [dm3] 2L_7587475_SNP [dm6]	A	C	6.748e^-4	0.88	INTERGENIC
2L	7587476	2L_7587476_SNP [dm3] 2L_7587476_SNP [dm6]	C	A	6.748e^-4	0.88	INTERGENIC
3R	17224315	3R_17224315_SNP [dm3] 3R_21398593_SNP [dm6]	T	C	6.757e^-4	0.88	INTRON CG6475	TF binding site mE1_TFBS_sens
3R	17224340	3R_17224340_SNP [dm3] 3R_21398618_SNP [dm6]	T	G	6.757e^-4	0.88	INTRON CG6475	TF binding site mE1_TFBS_sens
3R	17224342	3R_17224342_DEL [dm3] 3R_21398620_DEL [dm6]	TT	T	6.757e^-4	0.88	INTRON CG6475	TF binding site mE1_TFBS_sens
3R	17224351	3R_17224351_SNP [dm3] 3R_21398629_SNP [dm6]	C	G	6.757e^-4	0.88	INTRON CG6475	TF binding site mE1_TFBS_sens
3R	9960032	3R_9960032_SNP [dm3] 3R_14134310_SNP [dm6]	G	A	6.757e^-4	0.88	INTERGENIC
3R	9960033	3R_9960033_SNP [dm3] 3R_14134311_SNP [dm6]	C	T	6.757e^-4	0.88	INTERGENIC
3L	12789842	3L_12789842_SNP [dm3] 3L_12796742_SNP [dm6]	T	A	6.786e^-4	0.88	DOWNSTREAM CG42709 INTRON Atg1
X	19227573	X_19227573_SNP [dm3] X_19333540_SNP [dm6]	T	C	6.819e^-4	0.88	INTRON nAChRalpha7
2L	18156804	2L_18156804_SNP [dm3] 2L_18156804_SNP [dm6]	A	G	6.825e^-4	0.88	SPLICE_SITE_REGION CG5783 DOWNSTREAM CG15155 & 1 other INTRON CG5783
2L	18348675	2L_18348675_SNP [dm3] 2L_18348675_SNP [dm6]	T	C	6.825e^-4	0.88	INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19041904	2R_19041904_SNP [dm3] 2R_23154381_SNP [dm6]	T	G	6.825e^-4	0.88	INTRON CG9899
3R	14889241	3R_14889241_SNP [dm3] 3R_19063519_SNP [dm6]	A	G	6.825e^-4	0.88	INTRON cdi
3R	5305037	3R_5305037_DEL [dm3] 3R_9479315_DEL [dm6]	AAT	A	6.825e^-4	0.88	INTRON CG16779
X	21059026	X_21059026_SNP [dm3] X_21187999_SNP [dm6]	T	C	6.825e^-4	0.88	EXON CR45506
X	22039935	X_22039935_SNP [dm3] X_22638099_SNP [dm6]	G	A	6.825e^-4	0.88	INTERGENIC	transposable element FlyBase
X	22039948	X_22039948_SNP [dm3] X_22638112_SNP [dm6]	A	T	6.825e^-4	0.88	INTERGENIC	transposable element FlyBase
X	22040049	X_22040049_SNP [dm3] X_22638213_SNP [dm6]	A	G	6.825e^-4	0.88	INTERGENIC	transposable element FlyBase
3R	3832940	3R_3832940_SNP [dm3] 3R_8007218_SNP [dm6]	A	G	6.840e^-4	0.88	INTRON CG2767
3L	2619699	3L_2619699_SNP [dm3] 3L_2619699_SNP [dm6]	G	A	6.875e^-4	0.88	INTRON Pxn
X	20749320	X_20749320_SNP [dm3] X_20878293_SNP [dm6]	T	C	6.875e^-4	0.88	INTRON shakB
X	9867097	X_9867097_SNP [dm3] X_9973064_SNP [dm6]	A	C	6.875e^-4	0.88	INTRON CG43386
X	9867185	X_9867185_SNP [dm3] X_9973152_SNP [dm6]	C	A	6.875e^-4	0.88	INTRON CG43386
X	9867591	X_9867591_SNP [dm3] X_9973558_SNP [dm6]	A	T	6.875e^-4	0.88	INTRON CG43386
X	9867615	X_9867615_SNP [dm3] X_9973582_SNP [dm6]	T	A	6.875e^-4	0.88	INTRON CG43386
X	9867622	X_9867622_SNP [dm3] X_9973589_SNP [dm6]	G	A	6.875e^-4	0.88	INTRON CG43386
X	9867625	X_9867625_SNP [dm3] X_9973592_SNP [dm6]	A	C	6.875e^-4	0.88	INTRON CG43386
X	9867630	X_9867630_SNP [dm3] X_9973597_SNP [dm6]	A	G	6.875e^-4	0.88	INTRON CG43386
X	9867634	X_9867634_DEL [dm3] X_9973601_DEL [dm6]	TAA	T	6.875e^-4	0.88	INTRON CG43386
X	9867639	X_9867639_SNP [dm3] X_9973606_SNP [dm6]	G	A	6.875e^-4	0.88	INTRON CG43386
X	9867641	X_9867641_SNP [dm3] X_9973608_SNP [dm6]	A	T	6.875e^-4	0.88	INTRON CG43386
X	9867643	X_9867643_MNP [dm3] X_9973610_MNP [dm6]	TGT	AAA	6.875e^-4	0.88	INTRON CG43386
X	9867655	X_9867655_SNP [dm3] X_9973622_SNP [dm6]	A	G	6.875e^-4	0.88	INTRON CG43386
X	9867658	X_9867658_INS [dm3] X_9973625_INS [dm6]	T	TT	6.875e^-4	0.88	INTRON CG43386
X	9867692	X_9867692_SNP [dm3] X_9973659_SNP [dm6]	A	G	6.875e^-4	0.88	INTRON CG43386
3R	8215167	3R_8215167_SNP [dm3] 3R_12389445_SNP [dm6]	A	T	6.876e^-4	0.88	DOWNSTREAM CG33098 INTRON CG34402
3R	25323368	3R_25323368_SNP [dm3] 3R_29497646_SNP [dm6]	C	T	6.892e^-4	0.88	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12209804	3L_12209804_SNP [dm3] 3L_12216704_SNP [dm6]	C	G	6.908e^-4	0.88	INTRON app
3L	9508125	3L_9508125_SNP [dm3] 3L_9515025_SNP [dm6]	G	A	6.908e^-4	0.88	INTRON CG33700	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19003483	3R_19003483_SNP [dm3] 3R_23177761_SNP [dm6]	T	C	6.908e^-4	0.88	UPSTREAM Irk1 INTRON Irk1
X	22048304	X_22048304_SNP [dm3] X_22646468_SNP [dm6]	C	T	6.925e^-4	0.88	INTERGENIC
3L	15845127	3L_15845127_SNP [dm3] 3L_15852027_SNP [dm6]	T	C	6.930e^-4	0.88	INTRON pHCl
2R	12977177	2R_12977177_SNP [dm3] 2R_17089672_SNP [dm6]	C	A	6.931e^-4	0.88	INTRON Sply	TF binding site mE1_TFBS_sens
3L	1278444	3L_1278444_SNP [dm3] 3L_1278444_SNP [dm6]	A	C	6.938e^-4	0.88	INTRON CG32333
X	8694414	X_8694414_SNP [dm3] X_8800381_SNP [dm6]	C	A	6.938e^-4	0.88	INTRON Lim1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18924607	3R_18924607_SNP [dm3] 3R_23098885_SNP [dm6]	G	A	6.955e^-4	0.88	UPSTREAM CG6738 INTRON CG13830 & 1 other
3R	18924614	3R_18924614_SNP [dm3] 3R_23098892_SNP [dm6]	A	T	6.955e^-4	0.88	UPSTREAM CG6738 INTRON CG13830 & 1 other
3R	18924616	3R_18924616_SNP [dm3] 3R_23098894_SNP [dm6]	T	G	6.955e^-4	0.88	UPSTREAM CG6738 INTRON CG13830 & 1 other
3R	18924627	3R_18924627_SNP [dm3] 3R_23098905_SNP [dm6]	G	A	6.955e^-4	0.88	UPSTREAM CG6738 INTRON CG13830 & 1 other
3R	18924644	3R_18924644_SNP [dm3] 3R_23098922_SNP [dm6]	C	A	6.955e^-4	0.88	UPSTREAM CG6738 INTRON CG13830 & 1 other
3L	4739737	3L_4739737_SNP [dm3] 3L_4739737_SNP [dm6]	T	G	7.041e^-4	0.88	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
2R	6776609	2R_6776609_SNP [dm3] 2R_10889104_SNP [dm6]	A	G	7.044e^-4	0.88	INTRON CG30020
2L	19314954	2L_19314954_SNP [dm3] 2L_19314954_SNP [dm6]	G	A	7.101e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9846482	2L_9846482_SNP [dm3] 2L_9846482_SNP [dm6]	C	T	7.101e^-4	0.88	INTRON nAChRalpha6
2R	11476557	2R_11476557_DEL [dm3] 2R_15589052_DEL [dm6]	ATAATTGTCAA...	G	7.101e^-4	0.88	INTERGENIC
2R	11476595	2R_11476595_SNP [dm3] 2R_15589090_SNP [dm6]	C	T	7.101e^-4	0.88	INTERGENIC
2R	11476596	2R_11476596_SNP [dm3] 2R_15589091_SNP [dm6]	C	G	7.101e^-4	0.88	INTERGENIC
3L	4250857	3L_4250857_SNP [dm3] 3L_4250857_SNP [dm6]	C	T	7.101e^-4	0.88	SYNONYMOUS_CODING ago	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4251220	3L_4251220_SNP [dm3] 3L_4251220_SNP [dm6]	A	T	7.101e^-4	0.88	SYNONYMOUS_CODING ago	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	1245137	X_1245137_SNP [dm3] X_1351104_SNP [dm6]	G	A	7.101e^-4	0.88	SPLICE_SITE_REGION CG12773 SYNONYMOUS_CODING CG12773
X	19222484	X_19222484_INS [dm3] X_19328451_INS [dm6]	T	TCGCATAATGCAATCAGTGT...	7.101e^-4	0.88	UTR_3_PRIME nAChRalpha7 DOWNSTREAM nAChRalpha7
2R	11604752	2R_11604752_SNP [dm3] 2R_15717247_SNP [dm6]	G	A	7.135e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	22141633	X_22141633_SNP [dm3] X_22739797_SNP [dm6]	T	A	7.181e^-4	0.88	INTRON CR44997
X	22186894	X_22186894_SNP [dm3] X_22785058_SNP [dm6]	A	G	7.181e^-4	0.88	INTRON CR44997	transposable element FlyBase
2L	20942244	2L_20942244_SNP [dm3] 2L_20942244_SNP [dm6]	G	A	7.206e^-4	0.88	INTERGENIC
2L	19320911	2L_19320911_SNP [dm3] 2L_19320911_SNP [dm6]	C	T	7.225e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4216788	2R_4216788_SNP [dm3] 2R_8329283_SNP [dm6]	G	A	7.225e^-4	0.88	INTRON pdm3
3L	10594197	3L_10594197_INS [dm3] 3L_10601097_INS [dm6]	A	AT	7.225e^-4	0.88	INTERGENIC
2R	7273963	2R_7273963_SNP [dm3] 2R_11386458_SNP [dm6]	G	C	7.239e^-4	0.88	SYNONYMOUS_CODING sprt DOWNSTREAM CG30022	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7099001	3L_7099001_SNP [dm3] 3L_7105901_SNP [dm6]	C	T	7.239e^-4	0.88	INTRON form3
3L	7099057	3L_7099057_SNP [dm3] 3L_7105957_SNP [dm6]	T	C	7.239e^-4	0.88	INTRON form3
2R	8185808	2R_8185808_SNP [dm3] 2R_12298303_SNP [dm6]	C	A	7.255e^-4	0.88	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850 & 1 other
3L	18789152	3L_18789152_SNP [dm3] 3L_18796052_SNP [dm6]	G	C	7.261e^-4	0.88	INTRON ftz-f1
3L	12789843	3L_12789843_SNP [dm3] 3L_12796743_SNP [dm6]	G	T	7.267e^-4	0.88	DOWNSTREAM CG42709 INTRON Atg1
X	9867638	X_9867638_SNP [dm3] X_9973605_SNP [dm6]	T	C	7.292e^-4	0.88	INTRON CG43386
3R	17235348	3R_17235348_SNP [dm3] 3R_21409626_SNP [dm6]	G	A	7.293e^-4	0.88	SYNONYMOUS_CODING CheB93b DOWNSTREAM lbl
3L	16079661	3L_16079661_SNP [dm3] 3L_16086561_SNP [dm6]	T	G	7.295e^-4	0.88	SYNONYMOUS_CODING Taspase1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
3L	16081999	3L_16081999_SNP [dm3] 3L_16088899_SNP [dm6]	A	T	7.295e^-4	0.88	SYNONYMOUS_CODING CG5235	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10147527	3R_10147527_SNP [dm3] 3R_14321805_SNP [dm6]	G	C	7.364e^-4	0.88	NON_SYNONYMOUS_CODING Afti	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26242307	3R_26242307_SNP [dm3] 3R_30416585_SNP [dm6]	C	T	7.368e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	19037616	2R_19037616_SNP [dm3] 2R_23150093_SNP [dm6]	C	G	7.437e^-4	0.88	INTERGENIC
2R	13878324	2R_13878324_SNP [dm3] 2R_17990819_SNP [dm6]	A	T	7.438e^-4	0.88	INTRON dpr13
X	8296132	X_8296132_SNP [dm3] X_8402099_SNP [dm6]	T	G	7.438e^-4	0.88	SYNONYMOUS_CODING CG10555	TF binding site mE1_TFBS_chinmo
3L	1213445	3L_1213445_SNP [dm3] 3L_1213445_SNP [dm6]	T	C	7.439e^-4	0.88	DOWNSTREAM LysE INTRON mwh
3L	3611350	3L_3611350_SNP [dm3] 3L_3611350_SNP [dm6]	T	G	7.457e^-4	0.88	UPSTREAM CG10359 DOWNSTREAM Eip63E INTERGENIC
2R	17404783	2R_17404783_SNP [dm3] 2R_21517278_SNP [dm6]	G	A	7.483e^-4	0.88	SYNONYMOUS_CODING CG10494 DOWNSTREAM MESK2
3L	15845948	3L_15845948_SNP [dm3] 3L_15852848_SNP [dm6]	T	A	7.495e^-4	0.88	INTRON pHCl
2R	10454838	2R_10454838_SNP [dm3] 2R_14567333_SNP [dm6]	A	T	7.502e^-4	0.88	INTRON ttv
3L	3873172	3L_3873172_SNP [dm3] 3L_3873172_SNP [dm6]	A	G	7.502e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9229168	2L_9229168_SNP [dm3] 2L_9229168_SNP [dm6]	A	G	7.514e^-4	0.88	INTRON tai
2L	9229184	2L_9229184_SNP [dm3] 2L_9229184_SNP [dm6]	A	C	7.514e^-4	0.88	INTRON tai
2L	9229187	2L_9229187_SNP [dm3] 2L_9229187_SNP [dm6]	T	A	7.514e^-4	0.88	INTRON tai
3L	15100923	3L_15100923_SNP [dm3] 3L_15107823_SNP [dm6]	G	C	7.547e^-4	0.88	DOWNSTREAM CR43971 INTRON CTPsyn & 1 other	TF binding site BDTNP1_TFBS_dl
2L	18186431	2L_18186431_SNP [dm3] 2L_18186431_SNP [dm6]	C	T	7.562e^-4	0.88	UPSTREAM CR44900 INTRON CG42750
X	13933972	X_13933972_SNP [dm3] X_14039939_SNP [dm6]	T	C	7.563e^-4	0.88	INTERGENIC
3L	19312817	3L_19312817_SNP [dm3] 3L_19319717_SNP [dm6]	A	C	7.598e^-4	0.88	INTRON pip
3L	7772315	3L_7772315_SNP [dm3] 3L_7779215_SNP [dm6]	G	T	7.632e^-4	0.88	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	800763	3L_800763_SNP [dm3] 3L_800763_SNP [dm6]	C	T	7.664e^-4	0.88	INTERGENIC
3R	26469565	3R_26469565_SNP [dm3] 3R_30643843_SNP [dm6]	T	C	7.694e^-4	0.88	UTR_3_PRIME CG31013
3R	26470181	3R_26470181_SNP [dm3] 3R_30644459_SNP [dm6]	C	T	7.694e^-4	0.88	NON_SYNONYMOUS_CODING CG31013
X	4109261	X_4109261_SNP [dm3] X_4215228_SNP [dm6]	G	C	7.694e^-4	0.88	INTERGENIC
X	13933813	X_13933813_SNP [dm3] X_14039780_SNP [dm6]	T	A	7.696e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10318677	2R_10318677_SNP [dm3] 2R_14431172_SNP [dm6]	A	G	7.704e^-4	0.88	INTRON phyl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15761953	3L_15761953_SNP [dm3] 3L_15768853_SNP [dm6]	C	G	7.704e^-4	0.88	INTERGENIC
2L	12510043	2L_12510043_SNP [dm3] 2L_12510043_SNP [dm6]	C	T	7.782e^-4	0.88	INTRON bun
3L	7279017	3L_7279017_SNP [dm3] 3L_7285917_SNP [dm6]	A	C	7.782e^-4	0.88	INTRON unc-13-4A
X	5578165	X_5578165_SNP [dm3] X_5684132_SNP [dm6]	T	C	7.802e^-4	0.88	UTR_3_PRIME CG42449 INTRON CG42449
X	7233790	X_7233790_SNP [dm3] X_7339757_SNP [dm6]	A	T	7.854e^-4	0.88	INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	13208119	3L_13208119_SNP [dm3] 3L_13215019_SNP [dm6]	C	T	7.889e^-4	0.88	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208169	3L_13208169_SNP [dm3] 3L_13215069_SNP [dm6]	G	A	7.889e^-4	0.88	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	13208171	3L_13208171_SNP [dm3] 3L_13215071_SNP [dm6]	T	C	7.889e^-4	0.88	DOWNSTREAM tRNA:CR32127 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	12919117	3R_12919117_SNP [dm3] 3R_17093395_SNP [dm6]	C	T	7.905e^-4	0.88	SYNONYMOUS_CODING cher	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10923993	3L_10923993_DEL [dm3] 3L_10930893_DEL [dm6]	TT	T	7.909e^-4	0.88	INTERGENIC
X	16893628	X_16893628_SNP [dm3] X_16999595_SNP [dm6]	T	C	7.911e^-4	0.88	INTRON CG45002
3L	2783986	3L_2783986_SNP [dm3] 3L_2783986_SNP [dm6]	C	T	7.931e^-4	0.88	SYNONYMOUS_CODING pgant6
2R	12254375	2R_12254375_DEL [dm3] 2R_16366870_DEL [dm6]	TG	T	7.936e^-4	0.88	UPSTREAM CG15711 INTERGENIC
3R	17277861	3R_17277861_SNP [dm3] 3R_21452139_SNP [dm6]	T	C	7.950e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	13934920	X_13934920_INS [dm3] X_14040887_INS [dm6]	G	GT	7.951e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13934925	X_13934925_SNP [dm3] X_14040892_SNP [dm6]	T	C	7.951e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18789584	3L_18789584_SNP [dm3] 3L_18796484_SNP [dm6]	A	C	8.018e^-4	0.88	INTRON ftz-f1
3L	18789603	3L_18789603_SNP [dm3] 3L_18796503_SNP [dm6]	G	T	8.018e^-4	0.88	INTRON ftz-f1
3L	21762022	3L_21762022_SNP [dm3] 3L_21768922_SNP [dm6]	T	G	8.021e^-4	0.88	UPSTREAM CG7370 INTRON Syn1 & 1 other
X	22165454	X_22165454_SNP [dm3] X_22763618_SNP [dm6]	G	A	8.024e^-4	0.88	DOWNSTREAM CR44109 INTRON CR44997
3R	17025770	3R_17025770_SNP [dm3] 3R_21200048_SNP [dm6]	C	A	8.037e^-4	0.88	UPSTREAM SNF4Agamma INTRON SNF4Agamma
3L	18415480	3L_18415480_SNP [dm3] 3L_18422380_SNP [dm6]	T	C	8.059e^-4	0.88	INTERGENIC
2L	4596793	2L_4596793_SNP [dm3] 2L_4596793_SNP [dm6]	C	G	8.066e^-4	0.88	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_Kr
3L	6065043	3L_6065043_DEL [dm3] 3L_6071943_DEL [dm6]	ACGCT	A	8.067e^-4	0.88	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC
2R	4946961	2R_4946961_SNP [dm3] 2R_9059456_SNP [dm6]	C	T	8.078e^-4	0.88	UTR_5_PRIME CG13743
2R	6217163	2R_6217163_SNP [dm3] 2R_10329658_SNP [dm6]	C	T	8.078e^-4	0.88	INTRON CG42732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6217168	2R_6217168_INS [dm3] 2R_10329663_INS [dm6]	A	AC	8.078e^-4	0.88	INTRON CG42732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2804576	2L_2804576_SNP [dm3] 2L_2804576_SNP [dm6]	T	C	8.130e^-4	0.88	UPSTREAM daw INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3645824	3L_3645824_SNP [dm3] 3L_3645824_SNP [dm6]	A	T	8.137e^-4	0.88	INTRON dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3R	19764804	3R_19764804_SNP [dm3] 3R_23939082_SNP [dm6]	T	A	8.179e^-4	0.88	UPSTREAM Gdh INTRON Gdh
3R	23257705	3R_23257705_SNP [dm3] 3R_27431983_SNP [dm6]	A	C	8.197e^-4	0.88	INTRON side
3R	20991974	3R_20991974_SNP [dm3] 3R_25166252_SNP [dm6]	C	A	8.198e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12648867	2L_12648867_SNP [dm3] 2L_12648867_SNP [dm6]	T	G	8.211e^-4	0.88	INTERGENIC
X	18416737	X_18416737_SNP [dm3] X_18522704_SNP [dm6]	A	C	8.216e^-4	0.88	UPSTREAM CG6481 INTRON Bx
3R	14088540	3R_14088540_SNP [dm3] 3R_18262818_SNP [dm6]	A	C	8.254e^-4	0.88	INTERGENIC
3R	14088552	3R_14088552_SNP [dm3] 3R_18262830_SNP [dm6]	C	T	8.254e^-4	0.88	INTERGENIC
2L	18400842	2L_18400842_SNP [dm3] 2L_18400842_SNP [dm6]	G	A	8.277e^-4	0.88	EXON CR44486
3L	15509021	3L_15509021_SNP [dm3] 3L_15515921_SNP [dm6]	T	G	8.279e^-4	0.88	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	9969177	2R_9969177_SNP [dm3] 2R_14081672_SNP [dm6]	T	A	8.326e^-4	0.88	INTRON Prosap
3L	15491240	3L_15491240_INS [dm3] 3L_15498140_INS [dm6]	A	AA	8.357e^-4	0.88	UPSTREAM CG7276 & 1 other DOWNSTREAM CG13455 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19198735	2L_19198735_SNP [dm3] 2L_19198735_SNP [dm6]	A	T	8.393e^-4	0.88	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	1214613	3L_1214613_SNP [dm3] 3L_1214613_SNP [dm6]	G	T	8.393e^-4	0.88	INTRON mwh
3L	10150408	3L_10150408_SNP [dm3] 3L_10157308_SNP [dm6]	T	G	8.406e^-4	0.88	INTRON dpr10
3R	17268230	3R_17268230_SNP [dm3] 3R_21442508_SNP [dm6]	A	G	8.435e^-4	0.88	INTRON lbe
3R	9411594	3R_9411594_DEL [dm3] 3R_13585872_DEL [dm6]	CC	C	8.478e^-4	0.88	INTERGENIC
3R	5243084	3R_5243084_SNP [dm3] 3R_9417362_SNP [dm6]	A	T	8.544e^-4	0.88	UPSTREAM ps DOWNSTREAM alpha-Man-II INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1290667	2L_1290667_SNP [dm3] 2L_1290667_SNP [dm6]	G	A	8.576e^-4	0.88	INTRON robo3
3R	14526299	3R_14526299_SNP [dm3] 3R_18700577_SNP [dm6]	T	A	8.585e^-4	0.88	INTERGENIC
2R	16457454	2R_16457454_SNP [dm3] 2R_20569949_SNP [dm6]	T	C	8.588e^-4	0.88	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14304681	3R_14304681_SNP [dm3] 3R_18478959_SNP [dm6]	G	C	8.594e^-4	0.88	INTRON fru
3R	12910968	3R_12910968_SNP [dm3] 3R_17085246_SNP [dm6]	A	G	8.634e^-4	0.88	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20539420	X_20539420_SNP [dm3] X_20668393_SNP [dm6]	G	A	8.638e^-4	0.88	UTR_5_PRIME CG1835 INTRON CG1835	TF binding site BDTNP1_TFBS_dl
X	20539422	X_20539422_SNP [dm3] X_20668395_SNP [dm6]	T	C	8.638e^-4	0.88	UTR_5_PRIME CG1835 INTRON CG1835	TF binding site BDTNP1_TFBS_dl
3R	20127016	3R_20127016_SNP [dm3] 3R_24301294_SNP [dm6]	G	T	8.673e^-4	0.88	INTRON crb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11715661	2R_11715661_SNP [dm3] 2R_15828156_SNP [dm6]	C	T	8.680e^-4	0.88	INTRON tun & 1 other
3L	15102861	3L_15102861_SNP [dm3] 3L_15109761_SNP [dm6]	A	G	8.686e^-4	0.88	SYNONYMOUS_CODING CG45071 UPSTREAM CR43971 INTRON CTPsyn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12544941	3L_12544941_SNP [dm3] 3L_12551841_SNP [dm6]	G	A	8.695e^-4	0.88	INTRON sowah	TF binding site mE1_TFBS_chinmo
3L	13840465	3L_13840465_SNP [dm3] 3L_13847365_SNP [dm6]	C	A	8.695e^-4	0.88	SYNONYMOUS_CODING Hml
3R	16893415	3R_16893415_SNP [dm3] 3R_21067693_SNP [dm6]	A	G	8.721e^-4	0.88	INTRON AnxB9	TF binding site mE1_TFBS_HSA
2L	7908053	2L_7908053_SNP [dm3] 2L_7908053_SNP [dm6]	T	C	8.742e^-4	0.88	INTRON Snoo
3L	12092222	3L_12092222_SNP [dm3] 3L_12099122_SNP [dm6]	G	C	8.742e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12092254	3L_12092254_SNP [dm3] 3L_12099154_SNP [dm6]	C	A	8.742e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12092308	3L_12092308_SNP [dm3] 3L_12099208_SNP [dm6]	T	G	8.742e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12092703	3L_12092703_SNP [dm3] 3L_12099603_SNP [dm6]	C	T	8.742e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26686155	3R_26686155_SNP [dm3] 3R_30860433_SNP [dm6]	G	A	8.770e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10191335	3R_10191335_SNP [dm3] 3R_14365613_SNP [dm6]	C	A	8.808e^-4	0.88	INTRON NK7.1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	16892344	3R_16892344_DEL [dm3] 3R_21066622_DEL [dm6]	TT	T	8.808e^-4	0.88	INTRON AnxB9
3R	2375483	3R_2375483_DEL [dm3] 3R_6549761_DEL [dm6]	CG	C	8.808e^-4	0.88	UTR_3_PRIME Pif2 INTRON dpr11	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	4514426	3R_4514426_SNP [dm3] 3R_8688704_SNP [dm6]	C	T	8.808e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4515226	3R_4515226_SNP [dm3] 3R_8689504_SNP [dm6]	T	C	8.808e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4517787	3R_4517787_SNP [dm3] 3R_8692065_SNP [dm6]	G	C	8.808e^-4	0.88	NON_SYNONYMOUS_CODING hb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	4518040	3R_4518040_SNP [dm3] 3R_8692318_SNP [dm6]	T	C	8.808e^-4	0.88	NON_SYNONYMOUS_CODING hb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	4518159	3R_4518159_SNP [dm3] 3R_8692437_SNP [dm6]	G	A	8.808e^-4	0.88	NON_SYNONYMOUS_CODING hb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4519505	3R_4519505_SNP [dm3] 3R_8693783_SNP [dm6]	C	T	8.808e^-4	0.88	NON_SYNONYMOUS_CODING hb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_chinmo
3R	4524620	3R_4524620_SNP [dm3] 3R_8698898_SNP [dm6]	T	G	8.808e^-4	0.88	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	4527394	3R_4527394_SNP [dm3] 3R_8701672_SNP [dm6]	G	A	8.808e^-4	0.88	INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5979891	3R_5979891_SNP [dm3] 3R_10154169_SNP [dm6]	T	C	8.808e^-4	0.88	INTRON Invadolysin
2R	16299135	2R_16299135_SNP [dm3] 2R_20411630_SNP [dm6]	A	C	8.809e^-4	0.88	INTERGENIC
X	4113645	X_4113645_SNP [dm3] X_4219612_SNP [dm6]	T	C	8.819e^-4	0.88	NON_SYNONYMOUS_CODING CG15570
3R	11751392	3R_11751392_SNP [dm3] 3R_15925670_SNP [dm6]	T	C	8.831e^-4	0.88	UPSTREAM CG34276 INTRON CG4221 & 1 other
3R	11751395	3R_11751395_SNP [dm3] 3R_15925673_SNP [dm6]	A	G	8.831e^-4	0.88	UPSTREAM CG34276 INTRON CG4221 & 1 other
3R	11751445	3R_11751445_SNP [dm3] 3R_15925723_SNP [dm6]	A	G	8.831e^-4	0.88	UTR_5_PRIME CG34276 UPSTREAM CG34276 INTRON CG4221
3R	11751460	3R_11751460_SNP [dm3] 3R_15925738_SNP [dm6]	G	A	8.831e^-4	0.88	UTR_5_PRIME CG34276 UPSTREAM CG34276 INTRON CG4221
3L	10700604	3L_10700604_SNP [dm3] 3L_10707504_SNP [dm6]	A	G	8.831e^-4	0.88	INTERGENIC
2R	7726516	2R_7726516_SNP [dm3] 2R_11839011_SNP [dm6]	C	T	8.854e^-4	0.88	INTRON Sobp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7127826	3R_7127826_SNP [dm3] 3R_11302104_SNP [dm6]	G	T	8.855e^-4	0.88	INTRON CR31386	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12646351	3R_12646351_INS [dm3] 3R_16820629_INS [dm6]	A	ACCA	8.856e^-4	0.88	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	12646353	3R_12646353_SNP [dm3] 3R_16820631_SNP [dm6]	A	G	8.856e^-4	0.88	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	6467742	X_6467742_SNP [dm3] X_6573709_SNP [dm6]	G	A	8.868e^-4	0.88	INTRON CG34417
2L	19328997	2L_19328997_SNP [dm3] 2L_19328997_SNP [dm6]	A	G	8.874e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	17458710	3L_17458710_SNP [dm3] 3L_17465610_SNP [dm6]	A	G	8.890e^-4	0.88	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17971316	3R_17971316_SNP [dm3] 3R_22145594_SNP [dm6]	T	C	8.941e^-4	0.88	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17971321	3R_17971321_SNP [dm3] 3R_22145599_SNP [dm6]	G	C	8.941e^-4	0.88	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20406669	2L_20406669_SNP [dm3] 2L_20406669_SNP [dm6]	G	T	8.970e^-4	0.88	INTRON CG10947
3L	10205394	3L_10205394_SNP [dm3] 3L_10212294_SNP [dm6]	G	A	8.970e^-4	0.88	INTERGENIC
2R	12479346	2R_12479346_SNP [dm3] 2R_16591841_SNP [dm6]	C	T	8.970e^-4	0.88	INTRON CG8306
3L	15875112	3L_15875112_SNP [dm3] 3L_15882012_SNP [dm6]	A	G	8.976e^-4	0.88	INTRON pHCl
3L	15875123	3L_15875123_SNP [dm3] 3L_15882023_SNP [dm6]	A	C	8.976e^-4	0.88	INTRON pHCl
3L	6793601	3L_6793601_DEL [dm3] 3L_6800501_DEL [dm6]	TT	T	9.028e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15400814	3R_15400814_DEL [dm3] 3R_19575092_DEL [dm6]	CA	G	9.028e^-4	0.88	INTRON Dys
2L	6714220	2L_6714220_SNP [dm3] 2L_6714220_SNP [dm6]	T	A	9.039e^-4	0.88	INTRON AkhR
3R	23639348	3R_23639348_SNP [dm3] 3R_27813626_SNP [dm6]	G	A	9.039e^-4	0.88	INTRON CG34353
3L	12092235	3L_12092235_SNP [dm3] 3L_12099135_SNP [dm6]	A	T	9.107e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12092237	3L_12092237_SNP [dm3] 3L_12099137_SNP [dm6]	A	T	9.107e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4517016	3L_4517016_SNP [dm3] 3L_4517016_SNP [dm6]	G	T	9.132e^-4	0.88	INTRON Tie	TF binding site mE1_TFBS_inv
3R	9429053	3R_9429053_SNP [dm3] 3R_13603331_SNP [dm6]	A	G	9.133e^-4	0.88	INTERGENIC
3R	12910994	3R_12910994_SNP [dm3] 3R_17085272_SNP [dm6]	A	G	9.135e^-4	0.88	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	4927860	3R_4927860_INS [dm3] 3R_9102138_INS [dm6]	A	AA	9.151e^-4	0.88	INTRON pum
3R	4927899	3R_4927899_SNP [dm3] 3R_9102177_SNP [dm6]	G	A	9.151e^-4	0.88	INTRON pum
2L	1544050	2L_1544050_SNP [dm3] 2L_1544050_SNP [dm6]	T	C	9.154e^-4	0.88	INTERGENIC
2L	3079505	2L_3079505_SNP [dm3] 2L_3079505_SNP [dm6]	A	G	9.154e^-4	0.88	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16059242	3L_16059242_SNP [dm3] 3L_16066142_SNP [dm6]	A	T	9.175e^-4	0.88	INTRON Mbs
3L	13198326	3L_13198326_SNP [dm3] 3L_13205226_SNP [dm6]	T	G	9.199e^-4	0.88	INTERGENIC
3R	13933485	3R_13933485_DEL [dm3] 3R_18107763_DEL [dm6]	GCG	G	9.216e^-4	0.88	UPSTREAM tRNA:CR31242 INTRON sr
X	16144779	X_16144779_SNP [dm3] X_16250746_SNP [dm6]	C	T	9.226e^-4	0.88	INTERGENIC
X	4109242	X_4109242_SNP [dm3] X_4215209_SNP [dm6]	T	C	9.226e^-4	0.88	INTERGENIC
X	4109253	X_4109253_SNP [dm3] X_4215220_SNP [dm6]	G	A	9.226e^-4	0.88	INTERGENIC
X	9944328	X_9944328_SNP [dm3] X_10050295_SNP [dm6]	C	A	9.226e^-4	0.88	SYNONYMOUS_CODING Cht6 DOWNSTREAM Yp2
X	9944343	X_9944343_SNP [dm3] X_10050310_SNP [dm6]	C	T	9.226e^-4	0.88	SYNONYMOUS_CODING Cht6 DOWNSTREAM Yp2
X	22150171	X_22150171_INS [dm3] X_22748335_INS [dm6]	G	GCCGA	9.233e^-4	0.88	INTRON CR44997
X	22150172	X_22150172_INS [dm3] X_22748336_INS [dm6]	A	CC	9.233e^-4	0.88	INTRON CR44997
X	22150193	X_22150193_SNP [dm3] X_22748357_SNP [dm6]	A	G	9.233e^-4	0.88	INTRON CR44997
X	22152263	X_22152263_SNP [dm3] X_22750427_SNP [dm6]	C	A	9.233e^-4	0.88	INTRON CR44997
X	22152330	X_22152330_SNP [dm3] X_22750494_SNP [dm6]	C	T	9.233e^-4	0.88	INTRON CR44997
X	22155531	X_22155531_SNP [dm3] X_22753695_SNP [dm6]	C	G	9.233e^-4	0.88	INTRON CR44997	transposable element FlyBase
X	22156829	X_22156829_SNP [dm3] X_22754993_SNP [dm6]	G	T	9.233e^-4	0.88	INTRON CR44997	transposable element FlyBase
2R	8181198	2R_8181198_SNP [dm3] 2R_12293693_SNP [dm6]	C	T	9.251e^-4	0.88	INTRON CG42700	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8185809	2R_8185809_SNP [dm3] 2R_12298304_SNP [dm6]	T	A	9.251e^-4	0.88	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850 & 1 other
3R	14138022	3R_14138022_SNP [dm3] 3R_18312300_SNP [dm6]	G	A	9.266e^-4	0.88	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	16726295	3R_16726295_SNP [dm3] 3R_20900573_SNP [dm6]	C	A	9.271e^-4	0.88	INTERGENIC
3R	16726298	3R_16726298_INS [dm3] 3R_20900576_INS [dm6]	T	TTATTATAATGAAAGCTGAT...	9.271e^-4	0.88	INTERGENIC
2L	19263705	2L_19263705_SNP [dm3] 2L_19263705_SNP [dm6]	G	C	9.305e^-4	0.88	DOWNSTREAM CR44191 INTERGENIC
X	5578390	X_5578390_SNP [dm3] X_5684357_SNP [dm6]	A	T	9.305e^-4	0.88	UTR_3_PRIME CG42449 DOWNSTREAM CG3160
3R	26743481	3R_26743481_SNP [dm3] 3R_30917759_SNP [dm6]	C	G	9.321e^-4	0.88	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10670737	3L_10670737_SNP [dm3] 3L_10677637_SNP [dm6]	C	T	9.322e^-4	0.88	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16714719	3L_16714719_SNP [dm3] 3L_16721619_SNP [dm6]	A	C	9.372e^-4	0.88	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_cad
X	19904285	X_19904285_SNP [dm3] X_20010252_SNP [dm6]	A	G	9.372e^-4	0.88	INTRON Dop2R
3R	14680476	3R_14680476_SNP [dm3] 3R_18854754_SNP [dm6]	G	A	9.375e^-4	0.88	INTERGENIC
3R	14680500	3R_14680500_SNP [dm3] 3R_18854778_SNP [dm6]	C	T	9.375e^-4	0.88	INTERGENIC
2R	16828959	2R_16828959_SNP [dm3] 2R_20941454_SNP [dm6]	C	T	9.395e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6014804	X_6014804_SNP [dm3] X_6120771_SNP [dm6]	C	T	9.404e^-4	0.88	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl
3R	21331722	3R_21331722_SNP [dm3] 3R_25506000_SNP [dm6]	C	T	9.410e^-4	0.88	UPSTREAM CG5111 DOWNSTREAM CG5107 INTERGENIC
3R	11511099	3R_11511099_SNP [dm3] 3R_15685377_SNP [dm6]	G	T	9.436e^-4	0.88	INTRON pxb	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	11511169	3R_11511169_SNP [dm3] 3R_15685447_SNP [dm6]	A	G	9.436e^-4	0.88	INTRON pxb	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	8383582	3R_8383582_SNP [dm3] 3R_12557860_SNP [dm6]	A	G	9.445e^-4	0.88	INTRON Octbeta2R
3L	2137155	3L_2137155_SNP [dm3] 3L_2137155_SNP [dm6]	A	G	9.448e^-4	0.88	INTRON zormin
3R	19461786	3R_19461786_DEL [dm3] 3R_23636064_DEL [dm6]	ACCTCG	GA	9.457e^-4	0.88	INTRON CG31145
2L	965661	2L_965661_DEL [dm3] 2L_965661_DEL [dm6]	TACGGCGCTATGGAGT...	T	9.529e^-4	0.88	INTERGENIC
3L	15807642	3L_15807642_SNP [dm3] 3L_15814542_SNP [dm6]	A	C	9.544e^-4	0.88	INTRON fwe	TF binding site BDTNP1_TFBS_dl
3L	11177539	3L_11177539_SNP [dm3] 3L_11184439_SNP [dm6]	T	A	9.551e^-4	0.88	INTRON GlcAT-P
2R	9779172	2R_9779172_SNP [dm3] 2R_13891667_SNP [dm6]	C	T	9.605e^-4	0.88	SYNONYMOUS_CODING shot INTRON shot
3L	8439706	3L_8439706_SNP [dm3] 3L_8446606_SNP [dm6]	C	T	9.605e^-4	0.88	INTRON CG6983
3R	17289170	3R_17289170_SNP [dm3] 3R_21463448_SNP [dm6]	T	G	9.605e^-4	0.88	INTERGENIC
3R	17289438	3R_17289438_SNP [dm3] 3R_21463716_SNP [dm6]	G	C	9.605e^-4	0.88	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26010029	3R_26010029_SNP [dm3] 3R_30184307_SNP [dm6]	G	A	9.605e^-4	0.88	EXON CR44262
3L	10670738	3L_10670738_SNP [dm3] 3L_10677638_SNP [dm6]	T	C	9.621e^-4	0.88	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14545850	2R_14545850_SNP [dm3] 2R_18658345_SNP [dm6]	G	A	9.624e^-4	0.88	UPSTREAM SP2637 DOWNSTREAM Gint3 & 1 other INTERGENIC
3R	13308533	3R_13308533_SNP [dm3] 3R_17482811_SNP [dm6]	A	G	9.624e^-4	0.88	SYNONYMOUS_CODING Dscam3
3R	17115215	3R_17115215_SNP [dm3] 3R_21289493_SNP [dm6]	C	A	9.624e^-4	0.88	INTRON SIFaR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17463195	3R_17463195_SNP [dm3] 3R_21637473_SNP [dm6]	T	C	9.624e^-4	0.88	INTRON E2f	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	21410739	3R_21410739_SNP [dm3] 3R_25585017_SNP [dm6]	C	T	9.624e^-4	0.88	INTRON msi
3R	13889868	3R_13889868_SNP [dm3] 3R_18064146_SNP [dm6]	G	A	9.631e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	10183700	3R_10183700_SNP [dm3] 3R_14357978_SNP [dm6]	A	G	9.663e^-4	0.88	DOWNSTREAM CG31320 INTRON NK7.1
2L	18639117	2L_18639117_SNP [dm3] 2L_18639117_SNP [dm6]	G	A	9.684e^-4	0.88	INTRON MESR3
2L	18639161	2L_18639161_SNP [dm3] 2L_18639161_SNP [dm6]	C	G	9.684e^-4	0.88	INTRON MESR3
2L	22321344	2L_22321344_SNP [dm3] 2L_22321344_SNP [dm6]	A	C	9.684e^-4	0.88	INTRON CG17018	transposable element FlyBase
X	6545147	X_6545147_SNP [dm3] X_6651114_SNP [dm6]	T	A	9.701e^-4	0.88	UTR_3_PRIME pigs	TF binding site mE1_TFBS_inv
X	19039380	X_19039380_SNP [dm3] X_19145347_SNP [dm6]	A	C	9.708e^-4	0.88	INTRON RhoGAP18B
2R	19165589	2R_19165589_SNP [dm3] 2R_23278066_SNP [dm6]	T	G	9.789e^-4	0.88	INTERGENIC
X	20008984	X_20008984_SNP [dm3] X_20114951_SNP [dm6]	T	A	9.789e^-4	0.88	INTERGENIC
3L	10480415	3L_10480415_SNP [dm3] 3L_10487315_SNP [dm6]	G	A	9.790e^-4	0.88	INTRON A2bp1
3L	10480525	3L_10480525_SNP [dm3] 3L_10487425_SNP [dm6]	A	C	9.790e^-4	0.88	INTRON A2bp1
3R	1595937	3R_1595937_SNP [dm3] 3R_5770215_SNP [dm6]	A	C	9.810e^-4	0.88	INTRON CG2082
3R	4040562	3R_4040562_SNP [dm3] 3R_8214840_SNP [dm6]	A	G	9.810e^-4	0.88	INTERGENIC
3R	16742685	3R_16742685_SNP [dm3] 3R_20916963_SNP [dm6]	T	C	9.813e^-4	0.88	INTRON CG31191 & 1 other
3L	15643594	3L_15643594_SNP [dm3] 3L_15650494_SNP [dm6]	T	C	9.816e^-4	0.88	UTR_3_PRIME Eig71Eb UPSTREAM Eig71Ea & 1 other DOWNSTREAM Eig71Ec
3L	15643595	3L_15643595_SNP [dm3] 3L_15650495_SNP [dm6]	A	G	9.816e^-4	0.88	UTR_3_PRIME Eig71Eb UPSTREAM Eig71Ea & 1 other DOWNSTREAM Eig71Ec & 1 other
2L	19188555	2L_19188555_SNP [dm3] 2L_19188555_SNP [dm6]	G	C	9.838e^-4	0.88	INTRON pigeon	TF binding site mE1_TFBS_cad
2L	16460499	2L_16460499_DEL [dm3] 2L_16460499_DEL [dm6]	GG	G	9.841e^-4	0.88	INTERGENIC	regulatory region REDfly_CRMs
2L	1175541	2L_1175541_SNP [dm3] 2L_1175541_SNP [dm6]	C	T	9.888e^-4	0.88	INTRON CG4887	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1175547	2L_1175547_SNP [dm3] 2L_1175547_SNP [dm6]	A	G	9.888e^-4	0.88	INTRON CG4887	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12254400	2R_12254400_SNP [dm3] 2R_16366895_SNP [dm6]	T	C	9.909e^-4	0.88	UPSTREAM CG15711 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12254414	2R_12254414_SNP [dm3] 2R_16366909_SNP [dm6]	A	G	9.909e^-4	0.88	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12254420	2R_12254420_SNP [dm3] 2R_16366915_SNP [dm6]	T	A	9.909e^-4	0.88	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl
3L	938794	3L_938794_SNP [dm3] 3L_938794_SNP [dm6]	A	G	9.909e^-4	0.88	INTRON Glut1
3R	25411470	3R_25411470_SNP [dm3] 3R_29585748_SNP [dm6]	A	G	9.909e^-4	0.88	INTERGENIC
3R	25411525	3R_25411525_SNP [dm3] 3R_29585803_SNP [dm6]	G	T	9.909e^-4	0.88	INTERGENIC
X	22158437	X_22158437_DEL [dm3] X_22756601_DEL [dm6]	GTTTATAGCTAG...	G	9.941e^-4	0.88	INTRON CR44997
3L	2890083	3L_2890083_SNP [dm3] 3L_2890083_SNP [dm6]	G	C	9.945e^-4	0.88	INTRON spz5
2L	22323147	2L_22323147_SNP [dm3] 2L_22323147_SNP [dm6]	T	C	9.947e^-4	0.88	INTRON CG17018
3L	1200563	3L_1200563_SNP [dm3] 3L_1200563_SNP [dm6]	A	T	9.947e^-4	0.88	UPSTREAM mwh INTERGENIC
3R	16743070	3R_16743070_SNP [dm3] 3R_20917348_SNP [dm6]	T	A	9.971e^-4	0.88	INTRON CG31191 & 1 other	TF binding site BDTNP1_TFBS_prd
3R	16743090	3R_16743090_SNP [dm3] 3R_20917368_SNP [dm6]	C	T	9.971e^-4	0.88	INTRON CG31191 & 1 other	TF binding site BDTNP1_TFBS_prd
3R	17139340	3R_17139340_SNP [dm3] 3R_21313618_SNP [dm6]	C	T	9.981e^-4	0.88	EXON Hsromega
3R	16443893	3R_16443893_SNP [dm3] 3R_20618171_SNP [dm6]	T	A	9.994e^-4	0.88	INTRON CG5466	TF binding site mE1_TFBS_chinmo

Missing results

By genomic position
Variant impact
Gene name

Em Average % Mortality at Day 5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results