DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.295e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1721 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	2757738	2L_2757738_DEL [dm3] 2L_2757738_DEL [dm6]	AT	A	2.997e^-6	0.988	UTR_3_PRIME Bacc DOWNSTREAM CR44772 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	16659349	2R_16659349_SNP [dm3] 2R_20771844_SNP [dm6]	C	T	3.280e^-6	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	2662858	X_2662858_SNP [dm3] X_2768825_SNP [dm6]	G	A	3.796e^-6	0.988	INTRON kirre
2R	9526622	2R_9526622_SNP [dm3] 2R_13639117_SNP [dm6]	A	C	3.982e^-6	0.988	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12148290	2R_12148290_SNP [dm3] 2R_16260785_SNP [dm6]	A	T	4.072e^-6	0.988	UPSTREAM CngA INTERGENIC
2R	3175403	2R_3175403_SNP [dm3] 2R_7287898_SNP [dm6]	T	C	4.905e^-6	0.988	INTRON pwn
3R	14523254	3R_14523254_SNP [dm3] 3R_18697532_SNP [dm6]	A	T	5.502e^-6	0.988	INTERGENIC
2L	8492891	2L_8492891_SNP [dm3] 2L_8492891_SNP [dm6]	G	A	5.772e^-6	0.988	INTRON Dh31
3R	15137983	3R_15137983_SNP [dm3] 3R_19312261_SNP [dm6]	G	A	1.004e^-5	0.988	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18914456	3L_18914456_SNP [dm3] 3L_18921356_SNP [dm6]	G	C	1.018e^-5	0.988	SYNONYMOUS_CODING CG3819	TF binding site mE1_TFBS_cad
X	2662864	X_2662864_SNP [dm3] X_2768831_SNP [dm6]	A	G	1.039e^-5	0.988	INTRON kirre
2R	9526621	2R_9526621_SNP [dm3] 2R_13639116_SNP [dm6]	C	A	1.087e^-5	0.988	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	676520	2L_676520_SNP [dm3] 2L_676520_SNP [dm6]	C	G	1.099e^-5	0.988	INTRON ds
3R	24476268	3R_24476268_SNP [dm3] 3R_28650546_SNP [dm6]	G	A	1.180e^-5	0.988	UPSTREAM CG31050 INTERGENIC
2R	9526623	2R_9526623_INS [dm3] 2R_13639118_INS [dm6]	C	CCCCTGTTTTCC...	1.212e^-5	0.988	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12671321	3L_12671321_SNP [dm3] 3L_12678221_SNP [dm6]	T	C	1.238e^-5	0.988	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21856194	3R_21856194_SNP [dm3] 3R_26030472_SNP [dm6]	T	C	1.408e^-5	0.988	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	14523268	3R_14523268_SNP [dm3] 3R_18697546_SNP [dm6]	A	C	1.470e^-5	0.988	INTERGENIC
3L	10146873	3L_10146873_SNP [dm3] 3L_10153773_SNP [dm6]	A	G	1.497e^-5	0.988	DOWNSTREAM CG8072 INTRON dpr10
2R	18279183	2R_18279183_SNP [dm3] 2R_22391678_SNP [dm6]	T	C	1.635e^-5	0.988	SPLICE_SITE_REGION CG13506 INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2424463	2L_2424463_INS [dm3] 2L_2424463_INS [dm6]	A	AA	1.708e^-5	0.988	UTR_3_PRIME CG9886 UPSTREAM CG44139
3R	6930710	3R_6930710_SNP [dm3] 3R_11104988_SNP [dm6]	C	T	1.732e^-5	0.988	INTERGENIC
2L	11198371	2L_11198371_SNP [dm3] 2L_11198371_SNP [dm6]	T	A	1.828e^-5	0.988	INTRON Ca-beta
3L	3791730	3L_3791730_SNP [dm3] 3L_3791730_SNP [dm6]	G	A	1.890e^-5	0.988	DOWNSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_HSA
X	2662875	X_2662875_SNP [dm3] X_2768842_SNP [dm6]	C	T	1.911e^-5	0.988	INTRON kirre
2L	12053004	2L_12053004_SNP [dm3] 2L_12053004_SNP [dm6]	T	C	1.957e^-5	0.988	SYNONYMOUS_CODING JhI-21 DOWNSTREAM CG14945
2L	10958177	2L_10958177_SNP [dm3] 2L_10958177_SNP [dm6]	A	G	2.054e^-5	0.988	INTRON dpr2	TF binding site BDTNP1_TFBS_twi
2L	11882120	2L_11882120_SNP [dm3] 2L_11882120_SNP [dm6]	G	T	2.066e^-5	0.988	INTRON Pde1c
2R	16622889	2R_16622889_SNP [dm3] 2R_20735384_SNP [dm6]	C	T	2.162e^-5	0.988	INTRON dpr
2L	11881357	2L_11881357_SNP [dm3] 2L_11881357_SNP [dm6]	C	T	2.303e^-5	0.988	INTRON Pde1c	TF binding site mE1_TFBS_inv
X	3558355	X_3558355_SNP [dm3] X_3664322_SNP [dm6]	G	A	2.396e^-5	0.988	INTRON AstA-R1
X	2662877	X_2662877_SNP [dm3] X_2768844_SNP [dm6]	A	T	2.460e^-5	0.988	INTRON kirre
3L	16452175	3L_16452175_SNP [dm3] 3L_16459075_SNP [dm6]	C	A	2.588e^-5	0.988	INTRON CG33158
2L	2424473	2L_2424473_SNP [dm3] 2L_2424473_SNP [dm6]	C	T	2.596e^-5	0.988	UTR_3_PRIME CG9886 UPSTREAM CG44139
3L	4051322	3L_4051322_SNP [dm3] 3L_4051322_SNP [dm6]	G	A	2.623e^-5	0.988	INTRON CG1136	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3837822	3L_3837822_SNP [dm3] 3L_3837822_SNP [dm6]	T	G	2.627e^-5	0.988	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16659519	2R_16659519_SNP [dm3] 2R_20772014_SNP [dm6]	C	T	2.662e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17788317	2R_17788317_SNP [dm3] 2R_21900812_SNP [dm6]	T	G	2.829e^-5	0.988	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10191573	2L_10191573_DEL [dm3] 2L_10191573_DEL [dm6]	AA	T	2.850e^-5	0.988	UPSTREAM CG31874 INTRON Sur
2L	4936358	2L_4936358_SNP [dm3] 2L_4936358_SNP [dm6]	G	A	3.066e^-5	0.988	START_GAINED hoe2 UTR_5_PRIME hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5078311	X_5078311_INS [dm3] X_5184278_INS [dm6]	C	CC	3.110e^-5	0.988	INTRON rg & 1 other
2L	1274643	2L_1274643_SNP [dm3] 2L_1274643_SNP [dm6]	A	T	3.115e^-5	0.988	INTRON robo3
X	8122337	X_8122337_DEL [dm3] X_8228304_DEL [dm6]	ATGAAATTA	A	3.123e^-5	0.988	INTRON sdt	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	16658621	2R_16658621_INS [dm3] 2R_20771116_INS [dm6]	A	AA	3.126e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16659539	2R_16659539_SNP [dm3] 2R_20772034_SNP [dm6]	C	A	3.166e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2007818	2L_2007818_SNP [dm3] 2L_2007818_SNP [dm6]	A	G	3.299e^-5	0.988	UPSTREAM CG15353 & 1 other DOWNSTREAM CR45712 INTERGENIC
2L	10191576	2L_10191576_SNP [dm3] 2L_10191576_SNP [dm6]	T	G	3.330e^-5	0.988	UPSTREAM CG31874 INTRON Sur
3L	10292357	3L_10292357_SNP [dm3] 3L_10299257_SNP [dm6]	T	C	3.334e^-5	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2641281	3L_2641281_SNP [dm3] 3L_2641281_SNP [dm6]	T	G	3.351e^-5	0.988	UTR_3_PRIME CG42245 & 1 other DOWNSTREAM CG14949
3R	16239336	3R_16239336_SNP [dm3] 3R_20413614_SNP [dm6]	A	G	3.376e^-5	0.988	INTRON Gfrl
2L	10620490	2L_10620490_SNP [dm3] 2L_10620490_SNP [dm6]	C	G	3.414e^-5	0.988	SYNONYMOUS_CODING Trim9
2R	15822373	2R_15822373_SNP [dm3] 2R_19934868_SNP [dm6]	G	T	3.484e^-5	0.988	EXON CR44627
3L	10829147	3L_10829147_SNP [dm3] 3L_10836047_SNP [dm6]	A	G	3.495e^-5	0.988	INTERGENIC
3L	4630663	3L_4630663_SNP [dm3] 3L_4630663_SNP [dm6]	T	G	3.759e^-5	0.988	INTRON axo
2R	16622908	2R_16622908_SNP [dm3] 2R_20735403_SNP [dm6]	G	T	3.761e^-5	0.988	INTRON dpr
2L	3873833	2L_3873833_SNP [dm3] 2L_3873833_SNP [dm6]	G	A	3.778e^-5	0.988	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	2662880	X_2662880_SNP [dm3] X_2768847_SNP [dm6]	T	A	3.825e^-5	0.988	INTRON kirre
2L	11092228	2L_11092228_SNP [dm3] 2L_11092228_SNP [dm6]	A	T	3.826e^-5	0.988	SYNONYMOUS_CODING CG4705
2L	13257856	2L_13257856_SNP [dm3] 2L_13257856_SNP [dm6]	G	A	3.854e^-5	0.988	SYNONYMOUS_CODING CG31851 DOWNSTREAM CG31728
2L	8492926	2L_8492926_SNP [dm3] 2L_8492926_SNP [dm6]	C	G	3.945e^-5	0.988	INTRON Dh31
3R	934529	3R_934529_SNP [dm3] 3R_5108807_SNP [dm6]	C	T	4.159e^-5	0.988	NON_SYNONYMOUS_CODING CG43131	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2513759	3L_2513759_SNP [dm3] 3L_2513759_SNP [dm6]	T	C	4.166e^-5	0.988	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7816116	X_7816116_SNP [dm3] X_7922083_SNP [dm6]	G	A	4.173e^-5	0.988	DOWNSTREAM CG10777 & 1 other INTERGENIC
2L	5825126	2L_5825126_DEL [dm3] 2L_5825126_DEL [dm6]	CATTTGTAAGCTTTCTTAAG...	C	4.185e^-5	0.988	UTR_5_PRIME TrissinR
3L	2591792	3L_2591792_SNP [dm3] 3L_2591792_SNP [dm6]	G	T	4.346e^-5	0.988	INTRON dos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	8241764	3R_8241764_SNP [dm3] 3R_12416042_SNP [dm6]	T	C	4.409e^-5	0.988	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_sens
3L	12867573	3L_12867573_SNP [dm3] 3L_12874473_SNP [dm6]	C	A	4.441e^-5	0.988	INTERGENIC
3L	20872286	3L_20872286_INS [dm3] 3L_20879186_INS [dm6]	A	AA	4.454e^-5	0.988	INTRON CG32432
3R	16239305	3R_16239305_SNP [dm3] 3R_20413583_SNP [dm6]	T	A	4.522e^-5	0.988	INTRON Gfrl
2R	18698182	2R_18698182_SNP [dm3] 2R_22810677_SNP [dm6]	T	A	4.595e^-5	0.988	INTRON stl	TF binding site BDTNP1_TFBS_twi
2L	13082829	2L_13082829_SNP [dm3] 2L_13082829_SNP [dm6]	G	A	4.681e^-5	0.988	INTERGENIC
3L	11170952	3L_11170952_SNP [dm3] 3L_11177852_SNP [dm6]	C	T	4.724e^-5	0.988	UTR_3_PRIME GlcAT-P DOWNSTREAM CG14142
3L	1705363	3L_1705363_SNP [dm3] 3L_1705363_SNP [dm6]	G	A	4.790e^-5	0.988	INTRON CG7991
3L	15236549	3L_15236549_SNP [dm3] 3L_15243449_SNP [dm6]	C	T	4.830e^-5	0.988	DOWNSTREAM Tollo INTERGENIC
2L	7398781	2L_7398781_SNP [dm3] 2L_7398781_SNP [dm6]	A	G	4.838e^-5	0.988	UPSTREAM CR44079 & 1 other INTERGENIC
2L	2000406	2L_2000406_DEL [dm3] 2L_2000406_DEL [dm6]	TT	T	5.052e^-5	0.988	SPLICE_SITE_REGION CR43464 INTRON CG33543 & 1 other
3L	1083500	3L_1083500_DEL [dm3] 3L_1083500_DEL [dm6]	AA	A	5.053e^-5	0.988	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2R	12330495	2R_12330495_SNP [dm3] 2R_16442990_SNP [dm6]	G	A	5.172e^-5	0.988	UPSTREAM CG4409 INTERGENIC
X	9073331	X_9073331_SNP [dm3] X_9179298_SNP [dm6]	T	G	5.181e^-5	0.988	UTR_3_PRIME mei-P26
2R	11885404	2R_11885404_SNP [dm3] 2R_15997899_SNP [dm6]	C	G	5.259e^-5	0.988	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13562706	3R_13562706_SNP [dm3] 3R_17736984_SNP [dm6]	T	A	5.275e^-5	0.988	UTR_5_PRIME TyrRII
2R	19097092	2R_19097092_SNP [dm3] 2R_23209569_SNP [dm6]	A	G	5.341e^-5	0.988	DOWNSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_sens
3L	14202312	3L_14202312_SNP [dm3] 3L_14209212_SNP [dm6]	C	T	5.433e^-5	0.988	INTRON nuf
2L	16185023	2L_16185023_SNP [dm3] 2L_16185023_SNP [dm6]	C	T	5.730e^-5	0.988	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	11198388	2L_11198388_SNP [dm3] 2L_11198388_SNP [dm6]	C	T	5.878e^-5	0.988	INTRON Ca-beta
2L	13299627	2L_13299627_SNP [dm3] 2L_13299627_SNP [dm6]	C	T	5.879e^-5	0.988	SYNONYMOUS_CODING CG31729	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10955682	3R_10955682_SNP [dm3] 3R_15129960_SNP [dm6]	G	T	5.891e^-5	0.988	DOWNSTREAM mir-2493 INTRON CG42788
2L	8891499	2L_8891499_SNP [dm3] 2L_8891499_SNP [dm6]	G	C	5.903e^-5	0.988	UTR_5_PRIME CG42713
3L	3837804	3L_3837804_SNP [dm3] 3L_3837804_SNP [dm6]	A	C	5.912e^-5	0.988	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2424603	2L_2424603_SNP [dm3] 2L_2424603_SNP [dm6]	G	A	5.991e^-5	0.988	UTR_3_PRIME CG9886 UPSTREAM CG44139
3L	8685381	3L_8685381_SNP [dm3] 3L_8692281_SNP [dm6]	T	A	6.056e^-5	0.988	UPSTREAM CR44526 INTERGENIC	TF binding site mE1_TFBS_cad
2L	6770049	2L_6770049_SNP [dm3] 2L_6770049_SNP [dm6]	T	C	6.063e^-5	0.988	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15236689	2R_15236689_SNP [dm3] 2R_19349184_SNP [dm6]	T	G	6.077e^-5	0.988	INTRON Rgk1
3R	10955290	3R_10955290_SNP [dm3] 3R_15129568_SNP [dm6]	C	T	6.099e^-5	0.988	INTRON CG42788
2L	2000416	2L_2000416_SNP [dm3] 2L_2000416_SNP [dm6]	C	T	6.173e^-5	0.988	SPLICE_SITE_REGION CR43464 INTRON CG33543 EXON CR43464
2R	16843949	2R_16843949_SNP [dm3] 2R_20956444_SNP [dm6]	C	T	6.179e^-5	0.988	INTRON hbn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10956638	2L_10956638_SNP [dm3] 2L_10956638_SNP [dm6]	A	G	6.299e^-5	0.988	INTRON dpr2
2L	8891492	2L_8891492_SNP [dm3] 2L_8891492_SNP [dm6]	G	A	6.393e^-5	0.988	UTR_5_PRIME CG42713
3L	18918163	3L_18918163_SNP [dm3] 3L_18925063_SNP [dm6]	T	C	6.506e^-5	0.988	UPSTREAM CG43049 INTRON CG32204
3L	1083512	3L_1083512_SNP [dm3] 3L_1083512_SNP [dm6]	T	C	6.715e^-5	0.988	INTRON bab1	TF binding site BDTNP1_TFBS_dl
3L	15078081	3L_15078081_SNP [dm3] 3L_15084981_SNP [dm6]	G	T	6.856e^-5	0.988	INTRON cp309
2R	11423994	2R_11423994_SNP [dm3] 2R_15536489_SNP [dm6]	G	T	6.857e^-5	0.988	SPLICE_SITE_REGION CG30471 INTRON CG30471
2R	16618963	2R_16618963_SNP [dm3] 2R_20731458_SNP [dm6]	A	C	6.965e^-5	0.988	UPSTREAM CG13442 INTRON dpr
2R	8279379	2R_8279379_SNP [dm3] 2R_12391874_SNP [dm6]	T	A	6.974e^-5	0.988	UPSTREAM Cpr49Ad INTERGENIC
3R	21855653	3R_21855653_SNP [dm3] 3R_26029931_SNP [dm6]	T	C	6.979e^-5	0.988	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18698047	2R_18698047_SNP [dm3] 2R_22810542_SNP [dm6]	G	A	7.086e^-5	0.988	INTRON stl	TF binding site BDTNP1_TFBS_twi
3R	12203342	3R_12203342_SNP [dm3] 3R_16377620_SNP [dm6]	T	C	7.092e^-5	0.988	SYNONYMOUS_CODING ss	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15159832	3R_15159832_SNP [dm3] 3R_19334110_SNP [dm6]	T	C	7.254e^-5	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11815557	2R_11815557_SNP [dm3] 2R_15928052_SNP [dm6]	T	G	7.338e^-5	0.988	UTR_5_PRIME bdg INTRON bdg
2R	10005281	2R_10005281_SNP [dm3] 2R_14117776_SNP [dm6]	G	C	7.429e^-5	0.988	INTRON Prosap
3R	3994543	3R_3994543_SNP [dm3] 3R_8168821_SNP [dm6]	C	T	7.479e^-5	0.988	INTRON grn
2L	14735067	2L_14735067_SNP [dm3] 2L_14735067_SNP [dm6]	T	A	7.506e^-5	0.988	UPSTREAM CG31835 INTERGENIC
2R	19535680	2R_19535680_SNP [dm3] 2R_23648157_SNP [dm6]	G	A	7.570e^-5	0.988	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3178302	2L_3178302_SNP [dm3] 2L_3178302_SNP [dm6]	G	A	7.601e^-5	0.988	INTRON CG34393	TF binding site mE1_TFBS_sens
X	22209741	X_22209741_INS [dm3] X_22807905_INS [dm6]	G	GCTCCCGAA	7.614e^-5	0.988	UPSTREAM CR45464 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3838818	3L_3838818_SNP [dm3] 3L_3838818_SNP [dm6]	C	T	7.655e^-5	0.988	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5887941	2L_5887941_SNP [dm3] 2L_5887941_SNP [dm6]	T	G	7.663e^-5	0.988	UPSTREAM CR44578 INTRON CR44577
2R	17732336	2R_17732336_DEL [dm3] 2R_21844831_DEL [dm6]	GTG	G	7.668e^-5	0.988	INTERGENIC
2L	13259567	2L_13259567_SNP [dm3] 2L_13259567_SNP [dm6]	G	T	7.683e^-5	0.988	SYNONYMOUS_CODING CG31730 DOWNSTREAM CG31851
3L	5686199	3L_5686199_SNP [dm3] 3L_5693099_SNP [dm6]	T	G	7.714e^-5	0.988	INTRON sif
3L	13929147	3L_13929147_SNP [dm3] 3L_13936047_SNP [dm6]	T	C	7.817e^-5	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11423954	2R_11423954_SNP [dm3] 2R_15536449_SNP [dm6]	A	G	7.840e^-5	0.988	INTRON CG30471
2L	11198395	2L_11198395_SNP [dm3] 2L_11198395_SNP [dm6]	C	A	7.847e^-5	0.988	INTRON Ca-beta
2L	13427294	2L_13427294_SNP [dm3] 2L_13427294_SNP [dm6]	C	T	7.877e^-5	0.988	INTRON CG42784
2L	11092231	2L_11092231_SNP [dm3] 2L_11092231_SNP [dm6]	C	T	7.893e^-5	0.988	SYNONYMOUS_CODING CG4705
3R	23166521	3R_23166521_SNP [dm3] 3R_27340799_SNP [dm6]	C	G	7.900e^-5	0.988	NON_SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10207856	2R_10207856_SNP [dm3] 2R_14320351_SNP [dm6]	T	G	8.026e^-5	0.988	INTRON Shroom
3R	16239290	3R_16239290_SNP [dm3] 3R_20413568_SNP [dm6]	C	T	8.248e^-5	0.988	INTRON Gfrl
2R	4398671	2R_4398671_SNP [dm3] 2R_8511166_SNP [dm6]	T	C	8.252e^-5	0.988	INTRON mtt
2L	5604088	2L_5604088_SNP [dm3] 2L_5604088_SNP [dm6]	C	A	8.666e^-5	0.988	INTRON CG14010
3R	8383905	3R_8383905_SNP [dm3] 3R_12558183_SNP [dm6]	T	C	8.714e^-5	0.988	INTRON Octbeta2R
2R	9526610	2R_9526610_MNP [dm3] 2R_13639105_MNP [dm6]	AAC	CCT	8.739e^-5	0.988	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7156594	3R_7156594_SNP [dm3] 3R_11330872_SNP [dm6]	A	C	8.818e^-5	0.988	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15767689	3L_15767689_SNP [dm3] 3L_15774589_SNP [dm6]	A	G	9.075e^-5	0.988	INTERGENIC
X	22045489	X_22045489_SNP [dm3] X_22643653_SNP [dm6]	C	T	9.111e^-5	0.988	INTERGENIC
3L	1277524	3L_1277524_SNP [dm3] 3L_1277524_SNP [dm6]	C	T	9.159e^-5	0.988	INTRON CG32333
2L	14372505	2L_14372505_SNP [dm3] 2L_14372505_SNP [dm6]	A	T	9.213e^-5	0.988	INTERGENIC
3R	14968644	3R_14968644_SNP [dm3] 3R_19142922_SNP [dm6]	T	C	9.280e^-5	0.988	INTRON Ppcs
3L	5223965	3L_5223965_SNP [dm3] 3L_5230865_SNP [dm6]	G	A	9.381e^-5	0.988	INTRON shep
2L	2419105	2L_2419105_SNP [dm3] 2L_2419105_SNP [dm6]	T	C	9.419e^-5	0.988	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5604044	2L_5604044_SNP [dm3] 2L_5604044_SNP [dm6]	C	A	9.422e^-5	0.988	INTRON CG14010
2L	11833910	2L_11833910_SNP [dm3] 2L_11833910_SNP [dm6]	T	C	9.437e^-5	0.988	UPSTREAM CG45011 & 1 other INTRON Pde1c
3L	12773772	3L_12773772_SNP [dm3] 3L_12780672_SNP [dm6]	C	A	9.448e^-5	0.988	NON_SYNONYMOUS_CODING CG10969 UPSTREAM CG17666
3L	3966356	3L_3966356_SNP [dm3] 3L_3966356_SNP [dm6]	T	C	9.526e^-5	0.988	INTERGENIC
X	21094842	X_21094842_SNP [dm3] X_21223815_SNP [dm6]	G	C	9.549e^-5	0.988	INTRON CG32521	TF binding site mE1_TFBS_inv
2L	11092246	2L_11092246_SNP [dm3] 2L_11092246_SNP [dm6]	C	T	9.815e^-5	0.988	SYNONYMOUS_CODING CG4705
2R	9526618	2R_9526618_SNP [dm3] 2R_13639113_SNP [dm6]	C	T	9.837e^-5	0.988	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14203755	3L_14203755_SNP [dm3] 3L_14210655_SNP [dm6]	C	A	9.850e^-5	0.988	INTRON nuf
3L	290190	3L_290190_SNP [dm3] 3L_290190_SNP [dm6]	T	C	9.941e^-5	0.988	SYNONYMOUS_CODING RhoGEF3
3L	4972878	3L_4972878_SNP [dm3] 3L_4972878_SNP [dm6]	A	G	9.947e^-5	0.988	INTRON Con
X	19954473	X_19954473_INS [dm3] X_20060440_INS [dm6]	G	GAC	9.982e^-5	0.988	INTRON Dop2R
2R	11815752	2R_11815752_SNP [dm3] 2R_15928247_SNP [dm6]	G	A	1.002e^-4	0.988	UTR_5_PRIME bdg INTRON bdg
3L	3838290	3L_3838290_SNP [dm3] 3L_3838290_SNP [dm6]	T	C	1.013e^-4	0.988	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2896677	X_2896677_SNP [dm3] X_3002644_SNP [dm6]	C	G	1.014e^-4	0.988	INTRON kirre
X	2662907	X_2662907_SNP [dm3] X_2768874_SNP [dm6]	C	T	1.018e^-4	0.988	INTRON kirre
2L	6445478	2L_6445478_SNP [dm3] 2L_6445478_SNP [dm6]	A	G	1.019e^-4	0.988	SYNONYMOUS_CODING CG9527
2L	16185315	2L_16185315_SNP [dm3] 2L_16185315_SNP [dm6]	A	C	1.019e^-4	0.988	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad
3R	10966643	3R_10966643_SNP [dm3] 3R_15140921_SNP [dm6]	C	G	1.026e^-4	0.988	SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1854253	3L_1854253_SNP [dm3] 3L_1854253_SNP [dm6]	T	G	1.044e^-4	0.988	INTRON CG13936	insulator Insulator_Class_II.mE01
2L	4499503	2L_4499503_SNP [dm3] 2L_4499503_SNP [dm6]	G	A	1.045e^-4	0.988	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	18022544	X_18022544_SNP [dm3] X_18128511_SNP [dm6]	A	T	1.045e^-4	0.988	DOWNSTREAM mir-210 INTERGENIC
3L	5524355	3L_5524355_SNP [dm3] 3L_5531255_SNP [dm6]	C	T	1.064e^-4	0.988	INTERGENIC
2L	1655664	2L_1655664_SNP [dm3] 2L_1655664_SNP [dm6]	C	G	1.066e^-4	0.988	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3L	1277413	3L_1277413_SNP [dm3] 3L_1277413_SNP [dm6]	G	A	1.066e^-4	0.988	INTRON CG32333
2R	15822372	2R_15822372_SNP [dm3] 2R_19934867_SNP [dm6]	G	T	1.073e^-4	0.988	EXON CR44627
2L	11400454	2L_11400454_SNP [dm3] 2L_11400454_SNP [dm6]	G	T	1.080e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	21588154	3R_21588154_SNP [dm3] 3R_25762432_SNP [dm6]	A	G	1.087e^-4	0.988	UTR_5_PRIME LpR1
X	21093150	X_21093150_DEL [dm3] X_21222123_DEL [dm6]	AATTCATATGATTTTTGGGC...	A	1.090e^-4	0.988	INTRON CG32521
3L	12141399	3L_12141399_DEL [dm3] 3L_12148299_DEL [dm6]	AGTAAAATA	T	1.096e^-4	0.988	UPSTREAM eap INTRON Nrx-IV
2R	16190792	2R_16190792_SNP [dm3] 2R_20303287_SNP [dm6]	A	G	1.098e^-4	0.988	DOWNSTREAM CR44640 EXON CR44641
2L	11974442	2L_11974442_SNP [dm3] 2L_11974442_SNP [dm6]	A	T	1.109e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16893617	3L_16893617_SNP [dm3] 3L_16900517_SNP [dm6]	A	G	1.112e^-4	0.988	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
2L	7582818	2L_7582818_SNP [dm3] 2L_7582818_SNP [dm6]	A	G	1.112e^-4	0.988	NON_SYNONYMOUS_CODING Spn28B
2L	13258775	2L_13258775_DEL [dm3] 2L_13258775_DEL [dm6]	GTATATG	G	1.113e^-4	0.988	DOWNSTREAM CG31730 & 1 other INTERGENIC
2R	12710452	2R_12710452_SNP [dm3] 2R_16822947_SNP [dm6]	A	C	1.137e^-4	0.988	INTERGENIC
3L	1083495	3L_1083495_SNP [dm3] 3L_1083495_SNP [dm6]	T	A	1.142e^-4	0.988	INTRON bab1	TF binding site BDTNP1_TFBS_dl
3R	3409309	3R_3409309_SNP [dm3] 3R_7583587_SNP [dm6]	G	A	1.147e^-4	0.988	INTRON CG34127
2L	1287271	2L_1287271_SNP [dm3] 2L_1287271_SNP [dm6]	T	C	1.153e^-4	0.988	INTRON robo3
3L	7616648	3L_7616648_SNP [dm3] 3L_7623548_SNP [dm6]	C	A	1.154e^-4	0.988	INTRON CG33275	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8451044	2L_8451044_DEL [dm3] 2L_8451044_DEL [dm6]	TAATAATT	T	1.175e^-4	0.988	UTR_5_PRIME fu12 INTRON fu12
2R	17420935	2R_17420935_INS [dm3] 2R_21533430_INS [dm6]	A	AGTGCGA	1.185e^-4	0.988	INTRON Egfr
3R	24431363	3R_24431363_SNP [dm3] 3R_28605641_SNP [dm6]	G	A	1.188e^-4	0.988	UTR_3_PRIME Hrb98DE UPSTREAM CG9986 DOWNSTREAM Hrb98DE	TF binding site BDTNP1_TFBS_dl
2R	16824783	2R_16824783_SNP [dm3] 2R_20937278_SNP [dm6]	A	G	1.191e^-4	0.988	DOWNSTREAM Rx INTERGENIC
X	18212169	X_18212169_SNP [dm3] X_18318136_SNP [dm6]	G	A	1.213e^-4	0.988	INTRON CG6023
X	8016816	X_8016816_SNP [dm3] X_8122783_SNP [dm6]	T	G	1.232e^-4	0.988	INTRON cyr
2L	6793565	2L_6793565_SNP [dm3] 2L_6793565_SNP [dm6]	G	A	1.233e^-4	0.988	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	13430477	X_13430477_SNP [dm3] X_13536444_SNP [dm6]	A	C	1.239e^-4	0.988	DOWNSTREAM CG15756 INTERGENIC
2R	12710441	2R_12710441_DEL [dm3] 2R_16822936_DEL [dm6]	TG	T	1.244e^-4	0.988	INTERGENIC
3R	8240978	3R_8240978_SNP [dm3] 3R_12415256_SNP [dm6]	C	T	1.266e^-4	0.988	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_sens
3R	26808899	3R_26808899_SNP [dm3] 3R_30983177_SNP [dm6]	C	A	1.271e^-4	0.988	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11169608	2L_11169608_SNP [dm3] 2L_11169608_SNP [dm6]	T	G	1.274e^-4	0.988	INTRON Ca-beta
2R	12039778	2R_12039778_SNP [dm3] 2R_16152273_SNP [dm6]	A	T	1.278e^-4	0.988	INTRON lbk	transposable element FlyBase
3L	18913471	3L_18913471_SNP [dm3] 3L_18920371_SNP [dm6]	A	G	1.278e^-4	0.988	UPSTREAM CG18223 DOWNSTREAM CG3819 INTERGENIC
3L	16417249	3L_16417249_SNP [dm3] 3L_16424149_SNP [dm6]	A	T	1.283e^-4	0.988	INTRON CG33158 & 1 other
3L	3813222	3L_3813222_SNP [dm3] 3L_3813222_SNP [dm6]	G	A	1.297e^-4	0.988	SYNONYMOUS_CODING CG12006 UPSTREAM Scsalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9043198	3L_9043198_SNP [dm3] 3L_9050098_SNP [dm6]	A	G	1.297e^-4	0.988	SYNONYMOUS_CODING Argk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10955291	3R_10955291_SNP [dm3] 3R_15129569_SNP [dm6]	A	G	1.302e^-4	0.988	INTRON CG42788
X	13368305	X_13368305_SNP [dm3] X_13474272_SNP [dm6]	G	A	1.302e^-4	0.988	INTRON Neto
X	13368121	X_13368121_INS [dm3] X_13474088_INS [dm6]	A	AA	1.304e^-4	0.988	INTRON Neto
2R	11423931	2R_11423931_SNP [dm3] 2R_15536426_SNP [dm6]	C	A	1.313e^-4	0.988	SPLICE_SITE_REGION CG30471 SYNONYMOUS_CODING CG30471
2R	19487745	2R_19487745_SNP [dm3] 2R_23600222_SNP [dm6]	T	G	1.315e^-4	0.988	SYNONYMOUS_CODING CG42559 UTR_5_PRIME CG42560 UPSTREAM CG42560 DOWNSTREAM apt & 2 others
X	15265002	X_15265002_SNP [dm3] X_15370969_SNP [dm6]	G	A	1.317e^-4	0.988	INTRON acj6
2L	14372544	2L_14372544_SNP [dm3] 2L_14372544_SNP [dm6]	T	C	1.329e^-4	0.988	INTERGENIC
3R	15404350	3R_15404350_SNP [dm3] 3R_19578628_SNP [dm6]	G	T	1.330e^-4	0.988	INTRON Dys
2L	11833897	2L_11833897_SNP [dm3] 2L_11833897_SNP [dm6]	A	C	1.332e^-4	0.988	UPSTREAM CG45011 & 1 other INTRON Pde1c
2R	14956630	2R_14956630_SNP [dm3] 2R_19069125_SNP [dm6]	A	G	1.335e^-4	0.988	INTRON 5-HT1A
2R	19487801	2R_19487801_SNP [dm3] 2R_23600278_SNP [dm6]	A	T	1.335e^-4	0.988	UPSTREAM CG42560 DOWNSTREAM apt & 2 others INTRON CG42559 & 1 other
2L	8492879	2L_8492879_INS [dm3] 2L_8492879_INS [dm6]	T	TGGT	1.362e^-4	0.988	INTRON Dh31
3R	16239276	3R_16239276_SNP [dm3] 3R_20413554_SNP [dm6]	T	A	1.365e^-4	0.988	INTRON Gfrl
3L	9068080	3L_9068080_SNP [dm3] 3L_9074980_SNP [dm6]	A	G	1.367e^-4	0.988	DOWNSTREAM CG4942 INTRON Tequila	TF binding site mE1_TFBS_cad
2L	9949069	2L_9949069_SNP [dm3] 2L_9949069_SNP [dm6]	G	A	1.367e^-4	0.988	INTERGENIC
3R	21856098	3R_21856098_SNP [dm3] 3R_26030376_SNP [dm6]	G	A	1.370e^-4	0.988	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	18905016	3L_18905016_SNP [dm3] 3L_18911916_SNP [dm6]	C	T	1.373e^-4	0.988	UPSTREAM Ir75d INTRON CG14077
2L	12534190	2L_12534190_SNP [dm3] 2L_12534190_SNP [dm6]	T	G	1.375e^-4	0.988	INTRON bun
2L	11092279	2L_11092279_SNP [dm3] 2L_11092279_SNP [dm6]	A	G	1.385e^-4	0.988	SYNONYMOUS_CODING CG4705
3R	24281106	3R_24281106_DEL [dm3] 3R_28455384_DEL [dm6]	TTT	T	1.394e^-4	0.988	INTRON beat-VI
2L	13258558	2L_13258558_SNP [dm3] 2L_13258558_SNP [dm6]	G	T	1.398e^-4	0.988	UTR_3_PRIME CG31851 DOWNSTREAM CG31730 & 1 other
2L	1274641	2L_1274641_SNP [dm3] 2L_1274641_SNP [dm6]	T	A	1.401e^-4	0.988	INTRON robo3
3L	4811657	3L_4811657_SNP [dm3] 3L_4811657_SNP [dm6]	T	G	1.408e^-4	0.988	SYNONYMOUS_CODING Dhc64C
2L	17567197	2L_17567197_SNP [dm3] 2L_17567197_SNP [dm6]	G	T	1.409e^-4	0.988	DOWNSTREAM mir-124 INTERGENIC
2L	10620216	2L_10620216_SNP [dm3] 2L_10620216_SNP [dm6]	T	C	1.413e^-4	0.988	INTRON Trim9
X	20514391	X_20514391_SNP [dm3] X_20643364_SNP [dm6]	T	C	1.421e^-4	0.988	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	6930647	3R_6930647_SNP [dm3] 3R_11104925_SNP [dm6]	C	G	1.428e^-4	0.988	INTERGENIC
2L	1421912	2L_1421912_SNP [dm3] 2L_1421912_SNP [dm6]	G	A	1.453e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16342860	3L_16342860_SNP [dm3] 3L_16349760_SNP [dm6]	G	T	1.455e^-4	0.988	SYNONYMOUS_CODING CG4925 UPSTREAM tRNA:CR32357 DOWNSTREAM mRpS34
2L	1742112	2L_1742112_SNP [dm3] 2L_1742112_SNP [dm6]	T	C	1.463e^-4	0.988	INTRON CG17646	TF binding site mE1_TFBS_chinmo
2L	10118010	2L_10118010_SNP [dm3] 2L_10118010_SNP [dm6]	G	A	1.472e^-4	0.988	SYNONYMOUS_CODING CG34109 INTRON CG44153
3R	27640934	3R_27640934_SNP [dm3] 3R_31815212_SNP [dm6]	G	T	1.476e^-4	0.988	INTRON RhoGAP100F
2L	15389563	2L_15389563_SNP [dm3] 2L_15389563_SNP [dm6]	A	C	1.480e^-4	0.988	INTERGENIC
2L	15519736	2L_15519736_SNP [dm3] 2L_15519736_SNP [dm6]	T	C	1.480e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	17566265	2L_17566265_SNP [dm3] 2L_17566265_SNP [dm6]	G	C	1.480e^-4	0.988	UPSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	19491339	2R_19491339_SNP [dm3] 2R_23603816_SNP [dm6]	C	T	1.483e^-4	0.988	UTR_3_PRIME CG17664 DOWNSTREAM CG5398
2R	19352323	2R_19352323_SNP [dm3] 2R_23464800_SNP [dm6]	T	A	1.489e^-4	0.988	INTRON CG43795
3L	3835936	3L_3835936_DEL [dm3] 3L_3835936_DEL [dm6]	AA	A	1.500e^-4	0.988	INTRON enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2425046	2L_2425046_SNP [dm3] 2L_2425046_SNP [dm6]	C	T	1.502e^-4	0.988	DOWNSTREAM CG9886 & 1 other INTERGENIC
3L	18913570	3L_18913570_SNP [dm3] 3L_18920470_SNP [dm6]	A	T	1.504e^-4	0.988	UTR_3_PRIME CG3819 UPSTREAM CG18223 DOWNSTREAM CG3819
3L	4528969	3L_4528969_SNP [dm3] 3L_4528969_SNP [dm6]	A	C	1.504e^-4	0.988	INTRON Tie
2L	6107937	2L_6107937_SNP [dm3] 2L_6107937_SNP [dm6]	A	C	1.505e^-4	0.988	INTRON stai
X	17863905	X_17863905_DEL [dm3] X_17969872_DEL [dm6]	TGGTTTAGTCCT...	T	1.509e^-4	0.988	INTRON Sh
X	7906364	X_7906364_SNP [dm3] X_8012331_SNP [dm6]	A	T	1.515e^-4	0.988	INTRON Tbh
3L	5223862	3L_5223862_SNP [dm3] 3L_5230762_SNP [dm6]	G	A	1.519e^-4	0.988	INTRON shep
3L	16430221	3L_16430221_SNP [dm3] 3L_16437121_SNP [dm6]	T	G	1.521e^-4	0.988	INTRON CG33158 & 1 other	TF binding site mE1_TFBS_inv
3R	15091368	3R_15091368_SNP [dm3] 3R_19265646_SNP [dm6]	T	A	1.530e^-4	0.988	INTERGENIC
3R	10955669	3R_10955669_SNP [dm3] 3R_15129947_SNP [dm6]	T	C	1.534e^-4	0.988	DOWNSTREAM mir-2493 INTRON CG42788
2L	4962092	2L_4962092_SNP [dm3] 2L_4962092_SNP [dm6]	C	T	1.534e^-4	0.988	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16239453	3R_16239453_SNP [dm3] 3R_20413731_SNP [dm6]	T	G	1.541e^-4	0.988	INTRON Gfrl
X	18979396	X_18979396_SNP [dm3] X_19085363_SNP [dm6]	A	G	1.546e^-4	0.988	INTERGENIC
2L	7672623	2L_7672623_SNP [dm3] 2L_7672623_SNP [dm6]	C	T	1.550e^-4	0.988	INTRON Slob & 1 other
3L	5223870	3L_5223870_SNP [dm3] 3L_5230770_SNP [dm6]	T	C	1.551e^-4	0.988	INTRON shep
2R	17740189	2R_17740189_SNP [dm3] 2R_21852684_SNP [dm6]	T	C	1.551e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12369478	3L_12369478_SNP [dm3] 3L_12376378_SNP [dm6]	T	G	1.553e^-4	0.988	INTRON Ncc69
2R	16661557	2R_16661557_SNP [dm3] 2R_20774052_SNP [dm6]	T	A	1.556e^-4	0.988	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_chinmo
3L	4821047	3L_4821047_SNP [dm3] 3L_4821047_SNP [dm6]	G	T	1.559e^-4	0.988	SPLICE_SITE_REGION Dhc64C INTRON Dhc64C
3L	1139131	3L_1139131_SNP [dm3] 3L_1139131_SNP [dm6]	T	C	1.560e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	6930497	3R_6930497_SNP [dm3] 3R_11104775_SNP [dm6]	A	T	1.561e^-4	0.988	INTERGENIC
3L	3922633	3L_3922633_SNP [dm3] 3L_3922633_SNP [dm6]	C	T	1.562e^-4	0.988	INTRON Eip63F-1
2L	10620195	2L_10620195_DEL [dm3] 2L_10620195_DEL [dm6]	AGCTATTATAAA...	A	1.566e^-4	0.988	INTRON Trim9
3R	3410440	3R_3410440_SNP [dm3] 3R_7584718_SNP [dm6]	C	T	1.569e^-4	0.988	INTRON CG34127
X	8202670	X_8202670_SNP [dm3] X_8308637_SNP [dm6]	A	G	1.573e^-4	0.988	INTRON nAChRalpha3
X	2679985	X_2679985_SNP [dm3] X_2785952_SNP [dm6]	C	T	1.576e^-4	0.988	INTRON kirre & 1 other
2L	7399121	2L_7399121_SNP [dm3] 2L_7399121_SNP [dm6]	C	T	1.577e^-4	0.988	UPSTREAM CR44079 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9417424	2L_9417424_SNP [dm3] 2L_9417424_SNP [dm6]	A	C	1.579e^-4	0.988	INTRON Mco1
3R	13848495	3R_13848495_SNP [dm3] 3R_18022773_SNP [dm6]	A	G	1.584e^-4	0.988	SYNONYMOUS_CODING CG7785 UPSTREAM CG7794	TF binding site mE1_TFBS_cad
2L	14151210	2L_14151210_SNP [dm3] 2L_14151210_SNP [dm6]	G	A	1.586e^-4	0.988	INTRON CG17341
3L	4051300	3L_4051300_DEL [dm3] 3L_4051300_DEL [dm6]	CTCAGGCGC	C	1.587e^-4	0.988	INTRON CG1136	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7024371	3L_7024371_SNP [dm3] 3L_7031271_SNP [dm6]	C	T	1.590e^-4	0.988	INTRON Mp
X	13368091	X_13368091_SNP [dm3] X_13474058_SNP [dm6]	T	A	1.590e^-4	0.988	INTRON Neto
3L	4821080	3L_4821080_SNP [dm3] 3L_4821080_SNP [dm6]	A	T	1.592e^-4	0.988	INTRON Dhc64C
3L	4821094	3L_4821094_SNP [dm3] 3L_4821094_SNP [dm6]	A	T	1.592e^-4	0.988	INTRON Dhc64C
3R	14736127	3R_14736127_SNP [dm3] 3R_18910405_SNP [dm6]	A	C	1.601e^-4	0.988	UTR_3_PRIME EndoA DOWNSTREAM CG14291 & 1 other
3R	21901129	3R_21901129_SNP [dm3] 3R_26075407_SNP [dm6]	A	C	1.603e^-4	0.988	INTERGENIC
3R	13442613	3R_13442613_SNP [dm3] 3R_17616891_SNP [dm6]	C	G	1.613e^-4	0.988	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	13471635	3L_13471635_SNP [dm3] 3L_13478535_SNP [dm6]	A	C	1.614e^-4	0.988	INTRON stv	TF binding site mE1_TFBS_chinmo
2L	2424590	2L_2424590_SNP [dm3] 2L_2424590_SNP [dm6]	G	A	1.616e^-4	0.988	UTR_3_PRIME CG9886 UPSTREAM CG44139
3L	385395	3L_385395_SNP [dm3] 3L_385395_SNP [dm6]	G	A	1.621e^-4	0.988	INTRON trh
3L	4820803	3L_4820803_SNP [dm3] 3L_4820803_SNP [dm6]	G	C	1.648e^-4	0.988	SYNONYMOUS_CODING Dhc64C
2L	5075335	2L_5075335_SNP [dm3] 2L_5075335_SNP [dm6]	T	A	1.667e^-4	0.988	INTRON pgant5
2L	7398896	2L_7398896_SNP [dm3] 2L_7398896_SNP [dm6]	A	T	1.672e^-4	0.988	UPSTREAM CR44079 & 1 other INTERGENIC
2L	1748623	2L_1748623_SNP [dm3] 2L_1748623_SNP [dm6]	G	C	1.684e^-4	0.988	INTRON CG17646
2L	11092161	2L_11092161_SNP [dm3] 2L_11092161_SNP [dm6]	C	T	1.686e^-4	0.988	INTRON CG4705
3L	7177066	3L_7177066_SNP [dm3] 3L_7183966_SNP [dm6]	T	A	1.688e^-4	0.988	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12442541	3L_12442541_SNP [dm3] 3L_12449441_SNP [dm6]	G	T	1.689e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13368090	X_13368090_SNP [dm3] X_13474057_SNP [dm6]	G	A	1.702e^-4	0.988	INTRON Neto
3L	5524605	3L_5524605_SNP [dm3] 3L_5531505_SNP [dm6]	G	T	1.709e^-4	0.988	INTERGENIC
3L	11146175	3L_11146175_SNP [dm3] 3L_11153075_SNP [dm6]	A	G	1.714e^-4	0.988	INTRON CG32082
2R	12330608	2R_12330608_SNP [dm3] 2R_16443103_SNP [dm6]	A	T	1.718e^-4	0.988	UPSTREAM CG4409 INTERGENIC
2L	6514461	2L_6514461_DEL [dm3] 2L_6514461_DEL [dm6]	TCTATCATT	T	1.720e^-4	0.988	INTRON CG31637
3R	16238990	3R_16238990_SNP [dm3] 3R_20413268_SNP [dm6]	C	G	1.724e^-4	0.988	INTRON Gfrl
X	3262772	X_3262772_SNP [dm3] X_3368739_SNP [dm6]	G	A	1.729e^-4	0.988	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9943181	2R_9943181_SNP [dm3] 2R_14055676_SNP [dm6]	C	T	1.741e^-4	0.988	INTRON mam	TF binding site mE1_TFBS_cad
3L	14205826	3L_14205826_DEL [dm3] 3L_14212726_DEL [dm6]	TTTTGTCTTTTGGCATTGTT...	T	1.743e^-4	0.988	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	12616606	3L_12616606_SNP [dm3] 3L_12623506_SNP [dm6]	C	A	1.757e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16482947	3L_16482947_SNP [dm3] 3L_16489847_SNP [dm6]	G	A	1.758e^-4	0.988	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	12710550	2R_12710550_SNP [dm3] 2R_16823045_SNP [dm6]	A	G	1.759e^-4	0.988	INTERGENIC
2R	12710557	2R_12710557_SNP [dm3] 2R_16823052_SNP [dm6]	A	C	1.759e^-4	0.988	INTERGENIC
2R	12710564	2R_12710564_SNP [dm3] 2R_16823059_SNP [dm6]	C	T	1.759e^-4	0.988	INTERGENIC
2R	12710573	2R_12710573_SNP [dm3] 2R_16823068_SNP [dm6]	C	G	1.759e^-4	0.988	INTERGENIC
3L	13835327	3L_13835327_SNP [dm3] 3L_13842227_SNP [dm6]	G	A	1.759e^-4	0.988	START_GAINED CG8757 UTR_5_PRIME CG8757 DOWNSTREAM CG8750	TF binding site mE1_TFBS_cad
3L	4956973	3L_4956973_SNP [dm3] 3L_4956973_SNP [dm6]	T	A	1.760e^-4	0.988	INTRON Con
3L	15681002	3L_15681002_SNP [dm3] 3L_15687902_SNP [dm6]	C	G	1.761e^-4	0.988	UTR_5_PRIME CG34452 UPSTREAM CG34452 DOWNSTREAM CG34451	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2L	11833798	2L_11833798_SNP [dm3] 2L_11833798_SNP [dm6]	A	C	1.761e^-4	0.988	UPSTREAM CG45011 & 1 other INTRON Pde1c
2R	13820140	2R_13820140_DEL [dm3] 2R_17932635_DEL [dm6]	TCA	T	1.767e^-4	0.988	INTERGENIC
2R	11366981	2R_11366981_DEL [dm3] 2R_15479476_DEL [dm6]	GCG	G	1.778e^-4	0.988	INTRON CG8180	TF binding site mE1_TFBS_HSA
3L	4820968	3L_4820968_SNP [dm3] 3L_4820968_SNP [dm6]	T	G	1.779e^-4	0.988	SYNONYMOUS_CODING Dhc64C
2L	6793559	2L_6793559_SNP [dm3] 2L_6793559_SNP [dm6]	C	T	1.779e^-4	0.988	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6793581	2L_6793581_SNP [dm3] 2L_6793581_SNP [dm6]	A	C	1.779e^-4	0.988	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	22429095	3R_22429095_INS [dm3] 3R_26603373_INS [dm6]	T	TGAATT	1.783e^-4	0.988	UTR_3_PRIME scrib INTRON scrib
3L	1588066	3L_1588066_SNP [dm3] 3L_1588066_SNP [dm6]	G	A	1.797e^-4	0.988	INTRON CG13917
2L	10236685	2L_10236685_SNP [dm3] 2L_10236685_SNP [dm6]	C	A	1.798e^-4	0.988	INTRON mthl15	TF binding site BDTNP1_TFBS_twi
3L	16512601	3L_16512601_SNP [dm3] 3L_16519501_SNP [dm6]	C	T	1.798e^-4	0.988	INTRON CG43373
X	3371318	X_3371318_INS [dm3] X_3477285_INS [dm6]	A	ATATGTA	1.818e^-4	0.988	UTR_3_PRIME CG10804 INTRON CR44999
X	21097972	X_21097972_SNP [dm3] X_21226945_SNP [dm6]	G	C	1.821e^-4	0.988	INTRON CG32521
X	2662919	X_2662919_DEL [dm3] X_2768886_DEL [dm6]	AAA	A	1.828e^-4	0.988	INTRON kirre
2R	9979161	2R_9979161_SNP [dm3] 2R_14091656_SNP [dm6]	C	T	1.831e^-4	0.988	SYNONYMOUS_CODING CG42288 DOWNSTREAM CG42287 INTRON Prosap
2L	9656998	2L_9656998_SNP [dm3] 2L_9656998_SNP [dm6]	T	C	1.837e^-4	0.988	SYNONYMOUS_CODING CG33299 DOWNSTREAM Apoltp
2R	12469953	2R_12469953_SNP [dm3] 2R_16582448_SNP [dm6]	G	A	1.840e^-4	0.988	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	14203876	3L_14203876_INS [dm3] 3L_14210776_INS [dm6]	T	TT	1.845e^-4	0.988	INTRON nuf
2R	16678065	2R_16678065_SNP [dm3] 2R_20790560_SNP [dm6]	T	A	1.849e^-4	0.988	STOP_GAINED CG43677 UPSTREAM CG43667 DOWNSTREAM CG43668
2L	1274652	2L_1274652_SNP [dm3] 2L_1274652_SNP [dm6]	A	T	1.851e^-4	0.988	INTRON robo3
3L	12860067	3L_12860067_SNP [dm3] 3L_12866967_SNP [dm6]	A	G	1.861e^-4	0.988	INTERGENIC
3L	6361969	3L_6361969_SNP [dm3] 3L_6368869_SNP [dm6]	G	A	1.867e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7339080	2L_7339080_SNP [dm3] 2L_7339080_SNP [dm6]	G	A	1.872e^-4	0.988	INTRON Wnt6
3R	12018443	3R_12018443_SNP [dm3] 3R_16192721_SNP [dm6]	T	C	1.873e^-4	0.988	INTRON sra
3R	785548	3R_785548_SNP [dm3] 3R_4959826_SNP [dm6]	C	A	1.889e^-4	0.988	INTRON CG2016	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12738561	X_12738561_DEL [dm3] X_12844528_DEL [dm6]	AC	A	1.897e^-4	0.988	INTRON Pde9
X	13838510	X_13838510_SNP [dm3] X_13944477_SNP [dm6]	C	G	1.904e^-4	0.988	INTRON mamo
3R	16041564	3R_16041564_SNP [dm3] 3R_20215842_SNP [dm6]	G	A	1.907e^-4	0.988	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
2L	14892907	2L_14892907_SNP [dm3] 2L_14892907_SNP [dm6]	G	T	1.915e^-4	0.988	INTERGENIC
3R	20741620	3R_20741620_SNP [dm3] 3R_24915898_SNP [dm6]	A	T	1.915e^-4	0.988	UTR_3_PRIME CG44254 UPSTREAM tRNA:CR31416 DOWNSTREAM tRNA:CR31382 INTRON PIG-S	TF binding site mE1_TFBS_cad
3L	4956926	3L_4956926_SNP [dm3] 3L_4956926_SNP [dm6]	G	A	1.920e^-4	0.988	INTRON Con
2L	9175101	2L_9175101_SNP [dm3] 2L_9175101_SNP [dm6]	T	A	1.932e^-4	0.988	INTRON tai
2R	12709842	2R_12709842_SNP [dm3] 2R_16822337_SNP [dm6]	G	A	1.933e^-4	0.988	INTERGENIC
2R	12709985	2R_12709985_SNP [dm3] 2R_16822480_SNP [dm6]	A	T	1.933e^-4	0.988	INTERGENIC
2R	12709999	2R_12709999_SNP [dm3] 2R_16822494_SNP [dm6]	G	T	1.933e^-4	0.988	INTERGENIC
2R	12710357	2R_12710357_SNP [dm3] 2R_16822852_SNP [dm6]	A	T	1.933e^-4	0.988	INTERGENIC
2R	12710429	2R_12710429_SNP [dm3] 2R_16822924_SNP [dm6]	T	A	1.933e^-4	0.988	INTERGENIC
2R	12710432	2R_12710432_SNP [dm3] 2R_16822927_SNP [dm6]	A	G	1.933e^-4	0.988	INTERGENIC
2R	12710433	2R_12710433_DEL [dm3] 2R_16822928_DEL [dm6]	ACTATT	A	1.933e^-4	0.988	INTERGENIC
X	14076400	X_14076400_SNP [dm3] X_14182367_SNP [dm6]	A	T	1.936e^-4	0.988	SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17058165	2L_17058165_SNP [dm3] 2L_17058165_SNP [dm6]	C	T	1.938e^-4	0.988	INTERGENIC
3R	15173532	3R_15173532_SNP [dm3] 3R_19347810_SNP [dm6]	A	G	1.938e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	11111038	X_11111038_SNP [dm3] X_11217005_SNP [dm6]	A	G	1.939e^-4	0.988	INTERGENIC
3L	17028409	3L_17028409_SNP [dm3] 3L_17035309_SNP [dm6]	A	T	1.953e^-4	0.988	UPSTREAM beg INTERGENIC
3L	5523789	3L_5523789_SNP [dm3] 3L_5530689_SNP [dm6]	T	C	1.956e^-4	0.988	INTERGENIC
3L	18113780	3L_18113780_SNP [dm3] 3L_18120680_SNP [dm6]	T	C	1.958e^-4	0.988	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG42853	TF binding site mE1_TFBS_cad
3R	12406770	3R_12406770_SNP [dm3] 3R_16581048_SNP [dm6]	C	T	1.960e^-4	0.988	INTRON Scp2
3L	4798185	3L_4798185_SNP [dm3] 3L_4798185_SNP [dm6]	A	C	1.964e^-4	0.988	INTERGENIC
3L	18294833	3L_18294833_SNP [dm3] 3L_18301733_SNP [dm6]	G	A	1.966e^-4	0.988	UPSTREAM CG13700 DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6922903	2L_6922903_SNP [dm3] 2L_6922903_SNP [dm6]	C	T	1.985e^-4	0.988	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16657995	2R_16657995_SNP [dm3] 2R_20770490_SNP [dm6]	A	T	1.997e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4936350	2L_4936350_SNP [dm3] 2L_4936350_SNP [dm6]	T	G	2.003e^-4	0.988	UTR_5_PRIME hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5525049	3L_5525049_SNP [dm3] 3L_5531949_SNP [dm6]	T	G	2.004e^-4	0.988	INTERGENIC
2L	17534548	2L_17534548_SNP [dm3] 2L_17534548_SNP [dm6]	A	T	2.004e^-4	0.988	INTERGENIC
2R	12710569	2R_12710569_SNP [dm3] 2R_16823064_SNP [dm6]	G	T	2.008e^-4	0.988	INTERGENIC
2L	10956241	2L_10956241_SNP [dm3] 2L_10956241_SNP [dm6]	T	C	2.011e^-4	0.988	INTRON dpr2
2L	11400375	2L_11400375_SNP [dm3] 2L_11400375_SNP [dm6]	A	C	2.020e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs
2R	16618967	2R_16618967_SNP [dm3] 2R_20731462_SNP [dm6]	T	G	2.023e^-4	0.988	UPSTREAM CG13442 INTRON dpr
2R	15928811	2R_15928811_SNP [dm3] 2R_20041306_SNP [dm6]	C	G	2.041e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	6977143	2R_6977143_SNP [dm3] 2R_11089638_SNP [dm6]	G	A	2.041e^-4	0.988	INTRON luna	TF binding site BDTNP1_TFBS_twi
3L	5523685	3L_5523685_SNP [dm3] 3L_5530585_SNP [dm6]	C	T	2.042e^-4	0.988	INTERGENIC
3L	8656735	3L_8656735_SNP [dm3] 3L_8663635_SNP [dm6]	C	T	2.042e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13057888	3R_13057888_SNP [dm3] 3R_17232166_SNP [dm6]	G	A	2.047e^-4	0.988	DOWNSTREAM beat-IIb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_run
2L	6793571	2L_6793571_SNP [dm3] 2L_6793571_SNP [dm6]	T	C	2.055e^-4	0.988	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	3558575	X_3558575_SNP [dm3] X_3664542_SNP [dm6]	G	A	2.066e^-4	0.988	INTRON AstA-R1
2L	1747308	2L_1747308_SNP [dm3] 2L_1747308_SNP [dm6]	G	T	2.071e^-4	0.988	INTRON CG17646
2L	2424903	2L_2424903_SNP [dm3] 2L_2424903_SNP [dm6]	C	T	2.076e^-4	0.988	SYNONYMOUS_CODING CG44139 DOWNSTREAM CG9886
3R	25909173	3R_25909173_DEL [dm3] 3R_30083451_DEL [dm6]	GAG	G	2.080e^-4	0.988	INTRON sima
2R	13819914	2R_13819914_SNP [dm3] 2R_17932409_SNP [dm6]	A	T	2.081e^-4	0.988	INTERGENIC
3L	4956955	3L_4956955_SNP [dm3] 3L_4956955_SNP [dm6]	C	T	2.085e^-4	0.988	INTRON Con
3R	20744157	3R_20744157_SNP [dm3] 3R_24918435_SNP [dm6]	T	A	2.085e^-4	0.988	UPSTREAM CG11168 & 2 others INTRON CG11168
3L	15767684	3L_15767684_SNP [dm3] 3L_15774584_SNP [dm6]	T	C	2.099e^-4	0.988	INTERGENIC
2L	13708418	2L_13708418_SNP [dm3] 2L_13708418_SNP [dm6]	T	C	2.103e^-4	0.988	UTR_5_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_inv
2L	2424676	2L_2424676_DEL [dm3] 2L_2424676_DEL [dm6]	AA	A	2.112e^-4	0.988	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
X	11243918	X_11243918_SNP [dm3] X_11349885_SNP [dm6]	A	C	2.124e^-4	0.988	UPSTREAM CG11752 & 1 other DOWNSTREAM CG1738 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	18245293	2L_18245293_SNP [dm3] 2L_18245293_SNP [dm6]	T	A	2.154e^-4	0.988	INTRON CG42750
2R	12710401	2R_12710401_SNP [dm3] 2R_16822896_SNP [dm6]	T	A	2.163e^-4	0.988	INTERGENIC
2R	12710404	2R_12710404_SNP [dm3] 2R_16822899_SNP [dm6]	G	A	2.163e^-4	0.988	INTERGENIC
3L	24158998	3L_24158998_SNP [dm3] 3L_24165898_SNP [dm6]	C	T	2.191e^-4	0.988	INTRON Snap25
2R	12320687	2R_12320687_SNP [dm3] 2R_16433182_SNP [dm6]	C	T	2.196e^-4	0.988	UTR_3_PRIME CG4398 DOWNSTREAM CG7848	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19975976	X_19975976_SNP [dm3] X_20081943_SNP [dm6]	G	A	2.208e^-4	0.988	INTERGENIC
2R	12709967	2R_12709967_SNP [dm3] 2R_16822462_SNP [dm6]	A	G	2.217e^-4	0.988	INTERGENIC
2L	7224373	2L_7224373_SNP [dm3] 2L_7224373_SNP [dm6]	C	A	2.217e^-4	0.988	UTR_3_PRIME Ndae1 INTRON Ndae1
3R	12406762	3R_12406762_SNP [dm3] 3R_16581040_SNP [dm6]	T	C	2.221e^-4	0.988	INTRON Scp2
3R	27569867	3R_27569867_SNP [dm3] 3R_31744145_SNP [dm6]	C	T	2.239e^-4	0.988	UTR_3_PRIME CG1890 UPSTREAM CG1896 DOWNSTREAM Ef1alpha100E	TF binding site BDTNP1_TFBS_dl
2R	12710406	2R_12710406_SNP [dm3] 2R_16822901_SNP [dm6]	T	C	2.242e^-4	0.988	INTERGENIC
X	2662795	X_2662795_SNP [dm3] X_2768762_SNP [dm6]	T	G	2.245e^-4	0.988	INTRON kirre
2R	11347214	2R_11347214_SNP [dm3] 2R_15459709_SNP [dm6]	C	G	2.257e^-4	0.988	INTRON CG43729
2L	2229083	2L_2229083_SNP [dm3] 2L_2229083_SNP [dm6]	A	T	2.266e^-4	0.988	INTRON rti
2R	14114661	2R_14114661_SNP [dm3] 2R_18227156_SNP [dm6]	C	G	2.274e^-4	0.988	DOWNSTREAM CR45311 EXON CR45310
3L	18913506	3L_18913506_DEL [dm3] 3L_18920406_DEL [dm6]	AAAAATAT	A	2.285e^-4	0.988	UPSTREAM CG18223 DOWNSTREAM CG3819 INTERGENIC
3R	7896426	3R_7896426_SNP [dm3] 3R_12070704_SNP [dm6]	G	A	2.287e^-4	0.988	SYNONYMOUS_CODING CG14741	TF binding site mE1_TFBS_cad
2R	10034388	2R_10034388_SNP [dm3] 2R_14146883_SNP [dm6]	A	C	2.293e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	21085452	2R_21085452_DEL [dm3] 2R_25197929_DEL [dm6]	TC	T	2.296e^-4	0.988	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	6300644	2R_6300644_INS [dm3] 2R_10413139_INS [dm6]	C	GT	2.298e^-4	0.988	INTRON CG42732	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23006293	3R_23006293_SNP [dm3] 3R_27180571_SNP [dm6]	G	A	2.303e^-4	0.988	INTRON Ser	TF binding site mE1_TFBS_chinmo
2L	7749582	2L_7749582_SNP [dm3] 2L_7749582_SNP [dm6]	G	C	2.312e^-4	0.988	INTERGENIC
3R	27574087	3R_27574087_SNP [dm3] 3R_31748365_SNP [dm6]	C	A	2.313e^-4	0.988	UPSTREAM CG1910 & 1 other INTRON CG1910	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	17060431	2L_17060431_SNP [dm3] 2L_17060431_SNP [dm6]	C	T	2.332e^-4	0.988	INTERGENIC
2L	5493612	2L_5493612_SNP [dm3] 2L_5493612_SNP [dm6]	C	T	2.341e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9814616	3L_9814616_SNP [dm3] 3L_9821516_SNP [dm6]	C	T	2.341e^-4	0.988	UPSTREAM CG43897 INTRON CG43897
2R	16190785	2R_16190785_SNP [dm3] 2R_20303280_SNP [dm6]	G	A	2.343e^-4	0.988	DOWNSTREAM CR44640 EXON CR44641
3R	23000337	3R_23000337_SNP [dm3] 3R_27174615_SNP [dm6]	T	A	2.343e^-4	0.988	SYNONYMOUS_CODING Ser	TF binding site mE1_TFBS_cad
2R	12709966	2R_12709966_SNP [dm3] 2R_16822461_SNP [dm6]	A	T	2.344e^-4	0.988	INTERGENIC
2R	12709975	2R_12709975_SNP [dm3] 2R_16822470_SNP [dm6]	A	C	2.344e^-4	0.988	INTERGENIC
X	12344474	X_12344474_SNP [dm3] X_12450441_SNP [dm6]	A	G	2.348e^-4	0.988	INTRON Pkcdelta
3L	12419246	3L_12419246_SNP [dm3] 3L_12426146_SNP [dm6]	T	C	2.359e^-4	0.988	INTRON toe
2L	9934888	2L_9934888_SNP [dm3] 2L_9934888_SNP [dm6]	T	C	2.361e^-4	0.988	UTR_3_PRIME CG31712
2L	6793629	2L_6793629_SNP [dm3] 2L_6793629_SNP [dm6]	A	T	2.362e^-4	0.988	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2424634	2L_2424634_SNP [dm3] 2L_2424634_SNP [dm6]	C	T	2.374e^-4	0.988	UTR_3_PRIME CG9886 UPSTREAM CG44139
2R	10009183	2R_10009183_SNP [dm3] 2R_14121678_SNP [dm6]	C	G	2.375e^-4	0.988	INTRON Prosap	TF binding site mE1_TFBS_chinmo
3L	11146311	3L_11146311_SNP [dm3] 3L_11153211_SNP [dm6]	A	C	2.378e^-4	0.988	INTRON CG32082
2R	3422052	2R_3422052_SNP [dm3] 2R_7534547_SNP [dm6]	C	A	2.383e^-4	0.988	UPSTREAM Cyt-b5 INTRON Cyt-b5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
3R	13442278	3R_13442278_SNP [dm3] 3R_17616556_SNP [dm6]	C	T	2.388e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10943655	2L_10943655_SNP [dm3] 2L_10943655_SNP [dm6]	A	T	2.391e^-4	0.988	UPSTREAM CR44492 & 1 other INTRON dpr2
2L	16800564	2L_16800564_SNP [dm3] 2L_16800564_SNP [dm6]	T	A	2.393e^-4	0.988	INTRON Ugt36Bc
3L	16891461	3L_16891461_SNP [dm3] 3L_16898361_SNP [dm6]	T	A	2.400e^-4	0.988	INTRON Lmpt
3L	16891469	3L_16891469_SNP [dm3] 3L_16898369_SNP [dm6]	A	G	2.400e^-4	0.988	INTRON Lmpt
3L	16891472	3L_16891472_SNP [dm3] 3L_16898372_SNP [dm6]	A	T	2.400e^-4	0.988	INTRON Lmpt
3R	21856291	3R_21856291_SNP [dm3] 3R_26030569_SNP [dm6]	T	C	2.405e^-4	0.988	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	19839121	3L_19839121_SNP [dm3] 3L_19846021_SNP [dm6]	A	T	2.406e^-4	0.988	INTRON Papss	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16800556	2L_16800556_SNP [dm3] 2L_16800556_SNP [dm6]	T	A	2.409e^-4	0.988	INTRON Ugt36Bc
3L	11039150	3L_11039150_SNP [dm3] 3L_11046050_SNP [dm6]	A	T	2.419e^-4	0.988	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	20520918	3R_20520918_SNP [dm3] 3R_24695196_SNP [dm6]	A	G	2.419e^-4	0.988	INTRON slo
3L	9870005	3L_9870005_SNP [dm3] 3L_9876905_SNP [dm6]	C	T	2.423e^-4	0.988	DOWNSTREAM CR45406 INTERGENIC
3L	7036557	3L_7036557_SNP [dm3] 3L_7043457_SNP [dm6]	A	G	2.426e^-4	0.988	INTRON Mp
X	13623400	X_13623400_SNP [dm3] X_13729367_SNP [dm6]	T	C	2.430e^-4	0.988	SYNONYMOUS_CODING g	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3261617	X_3261617_SNP [dm3] X_3367584_SNP [dm6]	T	C	2.432e^-4	0.988	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	27556114	3R_27556114_SNP [dm3] 3R_31730392_SNP [dm6]	C	T	2.437e^-4	0.988	SYNONYMOUS_CODING ttk INTRON ttk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27565079	3R_27565079_DEL [dm3] 3R_31739357_DEL [dm6]	CT	A	2.437e^-4	0.988	UPSTREAM Ef1alpha100E INTRON Ef1alpha100E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	27575876	3R_27575876_SNP [dm3] 3R_31750154_SNP [dm6]	G	A	2.437e^-4	0.988	NON_SYNONYMOUS_CODING CG1910	TF binding site mE1_TFBS_sens
3R	27587549	3R_27587549_SNP [dm3] 3R_31761827_SNP [dm6]	C	T	2.437e^-4	0.988	UPSTREAM Smvt INTERGENIC
3R	27784891	3R_27784891_SNP [dm3] 3R_31959169_SNP [dm6]	G	A	2.437e^-4	0.988	INTRON heph
2L	2229197	2L_2229197_SNP [dm3] 2L_2229197_SNP [dm6]	C	T	2.438e^-4	0.988	INTRON rti
2L	2229204	2L_2229204_SNP [dm3] 2L_2229204_SNP [dm6]	T	A	2.438e^-4	0.988	INTRON rti
2L	4876855	2L_4876855_SNP [dm3] 2L_4876855_SNP [dm6]	T	A	2.442e^-4	0.988	DOWNSTREAM Cf2 & 1 other INTERGENIC
2R	10207847	2R_10207847_SNP [dm3] 2R_14320342_SNP [dm6]	A	G	2.452e^-4	0.988	INTRON Shroom
X	18379065	X_18379065_SNP [dm3] X_18485032_SNP [dm6]	T	C	2.458e^-4	0.988	INTRON psh	TF binding site mE1_TFBS_sens
X	16977067	X_16977067_SNP [dm3] X_17083034_SNP [dm6]	C	T	2.478e^-4	0.988	NON_SYNONYMOUS_CODING CG4955 INTRON CG8945
X	9557601	X_9557601_SNP [dm3] X_9663568_SNP [dm6]	G	A	2.479e^-4	0.988	UPSTREAM CG3106 INTERGENIC
3L	14229649	3L_14229649_SNP [dm3] 3L_14236549_SNP [dm6]	T	C	2.489e^-4	0.988	UPSTREAM CG7906 & 1 other INTERGENIC
2L	8168467	2L_8168467_SNP [dm3] 2L_8168467_SNP [dm6]	G	A	2.491e^-4	0.988	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14169800	2R_14169800_SNP [dm3] 2R_18282295_SNP [dm6]	A	G	2.493e^-4	0.988	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14205850	3L_14205850_SNP [dm3] 3L_14212750_SNP [dm6]	T	A	2.498e^-4	0.988	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	9067981	3L_9067981_SNP [dm3] 3L_9074881_SNP [dm6]	C	T	2.501e^-4	0.988	DOWNSTREAM CG4942 INTRON Tequila
3R	16019065	3R_16019065_DEL [dm3] 3R_20193343_DEL [dm6]	CA	G	2.507e^-4	0.988	INTERGENIC
2R	12710814	2R_12710814_SNP [dm3] 2R_16823309_SNP [dm6]	G	A	2.511e^-4	0.988	INTERGENIC
2L	19598487	2L_19598487_SNP [dm3] 2L_19598487_SNP [dm6]	T	C	2.513e^-4	0.988	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1287320	2L_1287320_SNP [dm3] 2L_1287320_SNP [dm6]	G	A	2.525e^-4	0.988	INTRON robo3
3L	1083549	3L_1083549_SNP [dm3] 3L_1083549_SNP [dm6]	T	C	2.530e^-4	0.988	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2R	12710408	2R_12710408_SNP [dm3] 2R_16822903_SNP [dm6]	T	C	2.536e^-4	0.988	INTERGENIC
2R	19445685	2R_19445685_SNP [dm3] 2R_23558162_SNP [dm6]	G	C	2.539e^-4	0.988	SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16041453	3R_16041453_SNP [dm3] 3R_20215731_SNP [dm6]	G	A	2.545e^-4	0.988	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
3L	9814617	3L_9814617_SNP [dm3] 3L_9821517_SNP [dm6]	A	G	2.546e^-4	0.988	UPSTREAM CG43897 INTRON CG43897
2R	19388330	2R_19388330_SNP [dm3] 2R_23500807_SNP [dm6]	T	C	2.555e^-4	0.988	DOWNSTREAM CG13558 INTERGENIC
3L	12141365	3L_12141365_DEL [dm3] 3L_12148265_DEL [dm6]	AACTAG	A	2.556e^-4	0.988	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl
3R	9637998	3R_9637998_SNP [dm3] 3R_13812276_SNP [dm6]	C	A	2.561e^-4	0.988	UPSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	17553546	2L_17553546_SNP [dm3] 2L_17553546_SNP [dm6]	C	T	2.563e^-4	0.988	DOWNSTREAM CG7094 INTERGENIC
3L	5223765	3L_5223765_SNP [dm3] 3L_5230665_SNP [dm6]	A	T	2.566e^-4	0.988	INTRON shep
3R	3460573	3R_3460573_SNP [dm3] 3R_7634851_SNP [dm6]	T	A	2.573e^-4	0.988	INTRON CG34127
3R	22134668	3R_22134668_SNP [dm3] 3R_26308946_SNP [dm6]	T	G	2.580e^-4	0.988	INTERGENIC
2L	17427085	2L_17427085_SNP [dm3] 2L_17427085_SNP [dm6]	C	T	2.586e^-4	0.988	INTRON Dif
3R	26808830	3R_26808830_SNP [dm3] 3R_30983108_SNP [dm6]	C	A	2.596e^-4	0.988	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11092178	2L_11092178_SNP [dm3] 2L_11092178_SNP [dm6]	C	T	2.599e^-4	0.988	INTRON CG4705
X	7693651	X_7693651_SNP [dm3] X_7799618_SNP [dm6]	G	A	2.603e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	487123	2L_487123_SNP [dm3] 2L_487123_SNP [dm6]	C	T	2.611e^-4	0.988	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	9271583	2L_9271583_SNP [dm3] 2L_9271583_SNP [dm6]	T	C	2.613e^-4	0.988	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	16800573	2L_16800573_SNP [dm3] 2L_16800573_SNP [dm6]	A	T	2.615e^-4	0.988	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
2L	5140931	2L_5140931_SNP [dm3] 2L_5140931_SNP [dm6]	T	A	2.628e^-4	0.988	INTRON Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5140983	2L_5140983_SNP [dm3] 2L_5140983_SNP [dm6]	C	A	2.628e^-4	0.988	INTRON Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16679598	2R_16679598_SNP [dm3] 2R_20792093_SNP [dm6]	T	A	2.631e^-4	0.988	NON_SYNONYMOUS_CODING CG43668 UPSTREAM CG43677 & 1 other
2L	13708423	2L_13708423_SNP [dm3] 2L_13708423_SNP [dm6]	G	A	2.631e^-4	0.988	UTR_5_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_inv
2L	18256584	2L_18256584_SNP [dm3] 2L_18256584_SNP [dm6]	T	G	2.635e^-4	0.988	DOWNSTREAM CG31788 INTRON CG42750 EXON CR43408
3R	24476014	3R_24476014_SNP [dm3] 3R_28650292_SNP [dm6]	T	C	2.638e^-4	0.988	NON_SYNONYMOUS_CODING CG31050
2R	12148279	2R_12148279_SNP [dm3] 2R_16260774_SNP [dm6]	A	T	2.638e^-4	0.988	UPSTREAM CngA INTERGENIC
3L	12727940	3L_12727940_SNP [dm3] 3L_12734840_SNP [dm6]	A	C	2.646e^-4	0.988	UPSTREAM Ptp69D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	5523671	3L_5523671_SNP [dm3] 3L_5530571_SNP [dm6]	C	T	2.648e^-4	0.988	INTERGENIC
2R	5585573	2R_5585573_SNP [dm3] 2R_9698068_SNP [dm6]	A	T	2.651e^-4	0.988	INTERGENIC
2L	2715920	2L_2715920_SNP [dm3] 2L_2715920_SNP [dm6]	G	A	2.651e^-4	0.988	INTRON CG31690
3R	16239256	3R_16239256_SNP [dm3] 3R_20413534_SNP [dm6]	G	A	2.655e^-4	0.988	INTRON Gfrl
2L	10607925	2L_10607925_SNP [dm3] 2L_10607925_SNP [dm6]	A	C	2.665e^-4	0.988	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1705086	3L_1705086_SNP [dm3] 3L_1705086_SNP [dm6]	A	T	2.688e^-4	0.988	INTRON CG7991
3R	14806359	3R_14806359_DEL [dm3] 3R_18980637_DEL [dm6]	TT	T	2.689e^-4	0.988	UPSTREAM dnk INTRON Smu1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Ubx
2L	7675045	2L_7675045_SNP [dm3] 2L_7675045_SNP [dm6]	G	A	2.693e^-4	0.988	UTR_5_PRIME Slob INTRON Myo28B1
2R	17452514	2R_17452514_SNP [dm3] 2R_21565009_SNP [dm6]	A	G	2.698e^-4	0.988	INTRON CG10440
3R	26839882	3R_26839882_SNP [dm3] 3R_31014160_SNP [dm6]	G	A	2.711e^-4	0.988	INTRON 5-HT7
3L	14206001	3L_14206001_SNP [dm3] 3L_14212901_SNP [dm6]	A	G	2.717e^-4	0.988	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	6107961	2L_6107961_DEL [dm3] 2L_6107961_DEL [dm6]	TG	T	2.721e^-4	0.988	INTRON stai
3L	20046068	3L_20046068_SNP [dm3] 3L_20052968_SNP [dm6]	A	C	2.721e^-4	0.988	INTERGENIC
2L	8129633	2L_8129633_SNP [dm3] 2L_8129633_SNP [dm6]	C	A	2.729e^-4	0.988	INTRON CG8668
3R	4319797	3R_4319797_SNP [dm3] 3R_8494075_SNP [dm6]	G	A	2.736e^-4	0.988	INTERGENIC
X	7882885	X_7882885_SNP [dm3] X_7988852_SNP [dm6]	T	C	2.742e^-4	0.988	INTERGENIC
3L	20042182	3L_20042182_SNP [dm3] 3L_20049082_SNP [dm6]	T	A	2.766e^-4	0.988	INTERGENIC
2L	1287273	2L_1287273_INS [dm3] 2L_1287273_INS [dm6]	T	TGTAAATACTAAC...	2.769e^-4	0.988	INTRON robo3
2L	12125855	2L_12125855_SNP [dm3] 2L_12125855_SNP [dm6]	G	C	2.770e^-4	0.988	SYNONYMOUS_CODING CG17211
2L	18235020	2L_18235020_SNP [dm3] 2L_18235020_SNP [dm6]	C	T	2.776e^-4	0.988	INTRON CG42750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16516864	3R_16516864_SNP [dm3] 3R_20691142_SNP [dm6]	T	C	2.780e^-4	0.988	INTRON Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13935209	2L_13935209_INS [dm3] 2L_13935209_INS [dm6]	A	AAGT	2.784e^-4	0.988	UPSTREAM CG16885 INTRON Ance-3
3L	16452276	3L_16452276_DEL [dm3] 3L_16459176_DEL [dm6]	GGAG	G	2.789e^-4	0.988	INTRON CG33158
3L	9108004	3L_9108004_SNP [dm3] 3L_9114904_SNP [dm6]	T	A	2.794e^-4	0.988	INTRON bol
X	8152075	X_8152075_SNP [dm3] X_8258042_SNP [dm6]	A	T	2.795e^-4	0.988	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
2L	5140633	2L_5140633_SNP [dm3] 2L_5140633_SNP [dm6]	T	C	2.809e^-4	0.988	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
X	15447031	X_15447031_SNP [dm3] X_15552998_SNP [dm6]	T	C	2.811e^-4	0.988	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18918854	3L_18918854_SNP [dm3] 3L_18925754_SNP [dm6]	C	T	2.815e^-4	0.988	INTRON CG32204 & 1 other
3R	27823743	3R_27823743_SNP [dm3] 3R_31998021_SNP [dm6]	G	T	2.833e^-4	0.988	INTRON heph
2L	11974449	2L_11974449_SNP [dm3] 2L_11974449_SNP [dm6]	A	G	2.848e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8620018	2L_8620018_SNP [dm3] 2L_8620018_SNP [dm6]	G	A	2.853e^-4	0.988	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2L	6383843	2L_6383843_SNP [dm3] 2L_6383843_SNP [dm6]	C	T	2.866e^-4	0.988	NON_SYNONYMOUS_CODING CG42370 DOWNSTREAM CG9507 INTRON CG42368
3R	18772641	3R_18772641_SNP [dm3] 3R_22946919_SNP [dm6]	A	C	2.866e^-4	0.988	INTRON klg	TF binding site BDTNP1_TFBS_prd
3L	2380308	3L_2380308_SNP [dm3] 3L_2380308_SNP [dm6]	A	G	2.886e^-4	0.988	INTRON CG45186
3R	13441992	3R_13441992_SNP [dm3] 3R_17616270_SNP [dm6]	C	A	2.887e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
X	6245040	X_6245040_SNP [dm3] X_6351007_SNP [dm6]	G	A	2.891e^-4	0.988	UPSTREAM CG3446 INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	12867574	3L_12867574_SNP [dm3] 3L_12874474_SNP [dm6]	C	T	2.894e^-4	0.988	INTERGENIC
3L	3032130	3L_3032130_SNP [dm3] 3L_3032130_SNP [dm6]	C	T	2.897e^-4	0.988	INTERGENIC
2L	6107969	2L_6107969_SNP [dm3] 2L_6107969_SNP [dm6]	T	A	2.899e^-4	0.988	INTRON stai
3L	16548909	3L_16548909_SNP [dm3] 3L_16555809_SNP [dm6]	T	A	2.913e^-4	0.988	INTERGENIC
3L	16452272	3L_16452272_INS [dm3] 3L_16459172_INS [dm6]	A	AGA	2.916e^-4	0.988	INTRON CG33158
X	13464129	X_13464129_DEL [dm3] X_13570096_DEL [dm6]	GG	C	2.918e^-4	0.988	INTRON Tango13
3R	22449270	3R_22449270_SNP [dm3] 3R_26623548_SNP [dm6]	C	T	2.932e^-4	0.988	UPSTREAM TwdlB INTERGENIC
X	10395788	X_10395788_SNP [dm3] X_10501755_SNP [dm6]	A	G	2.937e^-4	0.988	INTRON spri
2L	7224298	2L_7224298_SNP [dm3] 2L_7224298_SNP [dm6]	G	C	2.942e^-4	0.988	UTR_3_PRIME Ndae1 INTRON Ndae1
2L	21903452	2L_21903452_SNP [dm3] 2L_21903452_SNP [dm6]	C	G	2.954e^-4	0.988	SYNONYMOUS_CODING CG1421
2L	1309586	2L_1309586_SNP [dm3] 2L_1309586_SNP [dm6]	G	C	2.961e^-4	0.988	INTERGENIC
3L	1352732	3L_1352732_SNP [dm3] 3L_1352732_SNP [dm6]	T	C	2.967e^-4	0.988	UTR_3_PRIME 312 DOWNSTREAM 312 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	14925945	3R_14925945_SNP [dm3] 3R_19100223_SNP [dm6]	A	T	2.974e^-4	0.988	INTRON CG6040
2R	16694998	2R_16694998_DEL [dm3] 2R_20807493_DEL [dm6]	CC	C	2.977e^-4	0.988	INTERGENIC
2L	18234306	2L_18234306_SNP [dm3] 2L_18234306_SNP [dm6]	A	T	2.982e^-4	0.988	INTRON CG42750
2L	9983872	2L_9983872_SNP [dm3] 2L_9983872_SNP [dm6]	C	T	2.988e^-4	0.988	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11732127	2L_11732127_SNP [dm3] 2L_11732127_SNP [dm6]	T	C	2.988e^-4	0.988	INTERGENIC
3R	22253459	3R_22253459_SNP [dm3] 3R_26427737_SNP [dm6]	A	T	2.990e^-4	0.988	UPSTREAM CR43434 INTRON CR31084
3L	385299	3L_385299_SNP [dm3] 3L_385299_SNP [dm6]	G	A	3.000e^-4	0.988	INTRON trh
X	2662953	X_2662953_SNP [dm3] X_2768920_SNP [dm6]	A	G	3.011e^-4	0.988	INTRON kirre
2L	11744315	2L_11744315_SNP [dm3] 2L_11744315_SNP [dm6]	T	C	3.015e^-4	0.988	UTR_3_PRIME Vha100-5 DOWNSTREAM Vha100-5 EXON CR44144
2L	16523501	2L_16523501_SNP [dm3] 2L_16523501_SNP [dm6]	G	T	3.019e^-4	0.988	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
2R	20151028	2R_20151028_SNP [dm3] 2R_24263505_SNP [dm6]	A	G	3.019e^-4	0.988	INTRON CG3376	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5141016	2L_5141016_SNP [dm3] 2L_5141016_SNP [dm6]	A	C	3.019e^-4	0.988	INTRON Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16675605	2R_16675605_SNP [dm3] 2R_20788100_SNP [dm6]	C	T	3.024e^-4	0.988	DOWNSTREAM CG43666 INTERGENIC
2R	15479810	2R_15479810_SNP [dm3] 2R_19592305_SNP [dm6]	T	G	3.028e^-4	0.988	INTRON sm
3L	5223962	3L_5223962_SNP [dm3] 3L_5230862_SNP [dm6]	G	C	3.032e^-4	0.988	INTRON shep
2R	13477603	2R_13477603_SNP [dm3] 2R_17590098_SNP [dm6]	G	A	3.034e^-4	0.988	SYNONYMOUS_CODING RhoGAP54D UPSTREAM icln	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	12345539	2R_12345539_SNP [dm3] 2R_16458034_SNP [dm6]	A	T	3.036e^-4	0.988	INTERGENIC
3R	26866715	3R_26866715_SNP [dm3] 3R_31040993_SNP [dm6]	T	C	3.036e^-4	0.988	INTRON CanA1
2L	10191623	2L_10191623_SNP [dm3] 2L_10191623_SNP [dm6]	A	T	3.039e^-4	0.988	SYNONYMOUS_CODING Sur UPSTREAM CG31874
2L	17555006	2L_17555006_SNP [dm3] 2L_17555006_SNP [dm6]	T	G	3.049e^-4	0.988	SYNONYMOUS_CODING CG7094	TF binding site mE1_TFBS_sens
2R	16793567	2R_16793567_SNP [dm3] 2R_20906062_SNP [dm6]	A	C	3.055e^-4	0.988	INTERGENIC
X	2662911	X_2662911_SNP [dm3] X_2768878_SNP [dm6]	A	T	3.057e^-4	0.988	INTRON kirre
3R	25239540	3R_25239540_DEL [dm3] 3R_29413818_DEL [dm6]	CCTTATTC	C	3.057e^-4	0.988	INTRON Ptp99A
3L	5525091	3L_5525091_SNP [dm3] 3L_5531991_SNP [dm6]	C	T	3.062e^-4	0.988	INTERGENIC
2L	17043916	2L_17043916_SNP [dm3] 2L_17043916_SNP [dm6]	C	G	3.074e^-4	0.988	UPSTREAM CR43802 INTERGENIC
3R	14751194	3R_14751194_SNP [dm3] 3R_18925472_SNP [dm6]	C	A	3.079e^-4	0.988	NON_SYNONYMOUS_CODING Xrp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10300678	3L_10300678_SNP [dm3] 3L_10307578_SNP [dm6]	G	A	3.093e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15462211	2L_15462211_SNP [dm3] 2L_15462211_SNP [dm6]	C	G	3.100e^-4	0.988	INTERGENIC
3L	10754596	3L_10754596_SNP [dm3] 3L_10761496_SNP [dm6]	G	A	3.101e^-4	0.988	INTERGENIC
2L	8176538	2L_8176538_SNP [dm3] 2L_8176538_SNP [dm6]	A	T	3.124e^-4	0.988	INTRON Piezo
3L	4509562	3L_4509562_SNP [dm3] 3L_4509562_SNP [dm6]	T	G	3.134e^-4	0.988	INTERGENIC
X	8122352	X_8122352_SNP [dm3] X_8228319_SNP [dm6]	T	C	3.138e^-4	0.988	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	11974514	2L_11974514_SNP [dm3] 2L_11974514_SNP [dm6]	A	G	3.142e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11815579	2R_11815579_DEL [dm3] 2R_15928074_DEL [dm6]	ATTGGCAA	A	3.152e^-4	0.988	UTR_5_PRIME bdg INTRON bdg
3R	9551474	3R_9551474_MNP [dm3] 3R_13725752_MNP [dm6]	CAA	TTG	3.169e^-4	0.988	INTRON CG34383
3L	16763509	3L_16763509_SNP [dm3] 3L_16770409_SNP [dm6]	C	T	3.174e^-4	0.988	INTRON Nrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16658001	2R_16658001_SNP [dm3] 2R_20770496_SNP [dm6]	G	A	3.174e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19181465	X_19181465_SNP [dm3] X_19287432_SNP [dm6]	C	T	3.180e^-4	0.988	INTRON CG8034	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14231352	3L_14231352_INS [dm3] 3L_14238252_INS [dm6]	A	AACAGTGAA	3.181e^-4	0.988	UTR_3_PRIME CG7906 DOWNSTREAM CR45399 & 1 other
X	2786225	X_2786225_SNP [dm3] X_2892192_SNP [dm6]	T	G	3.182e^-4	0.988	UPSTREAM CG3526 INTRON kirre & 1 other
X	2579892	X_2579892_SNP [dm3] X_2685859_SNP [dm6]	A	G	3.190e^-4	0.988	START_GAINED per UTR_5_PRIME per
2L	1309438	2L_1309438_SNP [dm3] 2L_1309438_SNP [dm6]	G	C	3.202e^-4	0.988	INTERGENIC
3L	3836661	3L_3836661_SNP [dm3] 3L_3836661_SNP [dm6]	T	A	3.212e^-4	0.988	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10446569	X_10446569_SNP [dm3] X_10552536_SNP [dm6]	G	C	3.212e^-4	0.988	INTRON spri
X	3893909	X_3893909_INS [dm3] X_3999876_INS [dm6]	A	AA	3.215e^-4	0.988	INTERGENIC
3L	12857796	3L_12857796_SNP [dm3] 3L_12864696_SNP [dm6]	A	G	3.216e^-4	0.988	INTERGENIC
3L	17030792	3L_17030792_SNP [dm3] 3L_17037692_SNP [dm6]	A	C	3.221e^-4	0.988	DOWNSTREAM beg INTRON scaf6	TF binding site mE1_TFBS_cad
X	2512088	X_2512088_SNP [dm3] X_2618055_SNP [dm6]	A	T	3.222e^-4	0.988	UTR_3_PRIME Tsp3A DOWNSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2L	11974434	2L_11974434_SNP [dm3] 2L_11974434_SNP [dm6]	T	C	3.223e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15220838	3R_15220838_SNP [dm3] 3R_19395116_SNP [dm6]	T	C	3.225e^-4	0.988	UTR_3_PRIME CG3739 INTRON Ino80
2L	5824988	2L_5824988_SNP [dm3] 2L_5824988_SNP [dm6]	C	T	3.231e^-4	0.988	START_GAINED TrissinR UTR_5_PRIME TrissinR
3R	14587677	3R_14587677_SNP [dm3] 3R_18761955_SNP [dm6]	C	T	3.239e^-4	0.988	SYNONYMOUS_CODING CG7720
3L	4509559	3L_4509559_SNP [dm3] 3L_4509559_SNP [dm6]	G	A	3.241e^-4	0.988	INTERGENIC
3L	5525069	3L_5525069_SNP [dm3] 3L_5531969_SNP [dm6]	A	G	3.246e^-4	0.988	INTERGENIC
2R	4438449	2R_4438449_SNP [dm3] 2R_8550944_SNP [dm6]	C	A	3.252e^-4	0.988	DOWNSTREAM CG12780 INTERGENIC
2L	14372480	2L_14372480_SNP [dm3] 2L_14372480_SNP [dm6]	C	T	3.260e^-4	0.988	INTERGENIC
2L	11528870	2L_11528870_DEL [dm3] 2L_11528870_DEL [dm6]	TTT	T	3.281e^-4	0.988	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
3L	8877016	3L_8877016_SNP [dm3] 3L_8883916_SNP [dm6]	A	G	3.288e^-4	0.988	INTRON dally
2L	3201612	2L_3201612_SNP [dm3] 2L_3201612_SNP [dm6]	A	C	3.295e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
4	480787	4_480787_DEL [dm3] 4_460161_DEL [dm6]	TT	T	3.300e^-4	0.988	INTRON bip2 EXON CR45126	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6926668	3R_6926668_SNP [dm3] 3R_11100946_SNP [dm6]	A	C	3.305e^-4	0.988	UPSTREAM CR45579 INTERGENIC
2R	10034463	2R_10034463_INS [dm3] 2R_14146958_INS [dm6]	G	TA	3.306e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	8924163	3L_8924163_SNP [dm3] 3L_8931063_SNP [dm6]	C	T	3.328e^-4	0.988	UTR_3_PRIME Tsp66E	TF binding site mE1_TFBS_sens
3L	3025723	3L_3025723_SNP [dm3] 3L_3025723_SNP [dm6]	A	T	3.336e^-4	0.988	SYNONYMOUS_CODING aly	TF binding site mE1_TFBS_h
2L	13251412	2L_13251412_SNP [dm3] 2L_13251412_SNP [dm6]	T	C	3.341e^-4	0.988	UPSTREAM CG31728 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6514028	X_6514028_DEL [dm3] X_6619995_DEL [dm6]	AA	C	3.345e^-4	0.988	INTRON pigs
2L	13341297	2L_13341297_SNP [dm3] 2L_13341297_SNP [dm6]	G	T	3.348e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18912850	3L_18912850_SNP [dm3] 3L_18919750_SNP [dm6]	C	T	3.355e^-4	0.988	SYNONYMOUS_CODING CG18223 UTR_3_PRIME CG18223 DOWNSTREAM CG6839 & 1 other
3L	18912913	3L_18912913_SNP [dm3] 3L_18919813_SNP [dm6]	G	A	3.355e^-4	0.988	SYNONYMOUS_CODING CG18223 UTR_3_PRIME CG18223 DOWNSTREAM CG6839 & 1 other
X	4631576	X_4631576_SNP [dm3] X_4737543_SNP [dm6]	T	C	3.357e^-4	0.988	INTERGENIC
2L	10656745	2L_10656745_SNP [dm3] 2L_10656745_SNP [dm6]	C	T	3.370e^-4	0.988	UPSTREAM CR45692 INTERGENIC
3R	9708823	3R_9708823_SNP [dm3] 3R_13883101_SNP [dm6]	T	A	3.375e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13128298	3L_13128298_SNP [dm3] 3L_13135198_SNP [dm6]	T	C	3.375e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	22845659	3R_22845659_SNP [dm3] 3R_27019937_SNP [dm6]	A	T	3.376e^-4	0.988	UPSTREAM CG17191 DOWNSTREAM CG6283 INTRON RYa-R
X	15447622	X_15447622_SNP [dm3] X_15553589_SNP [dm6]	T	G	3.377e^-4	0.988	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl
2R	16679690	2R_16679690_SNP [dm3] 2R_20792185_SNP [dm6]	G	C	3.380e^-4	0.988	START_GAINED CG43668 UTR_5_PRIME CG43668 UPSTREAM CG15225
2L	9171630	2L_9171630_SNP [dm3] 2L_9171630_SNP [dm6]	A	T	3.382e^-4	0.988	INTRON tai
2L	18677974	2L_18677974_DEL [dm3] 2L_18677974_DEL [dm6]	AATTGATGTG	A	3.386e^-4	0.988	UPSTREAM Mst36Fa & 1 other INTRON CG31751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18918874	3L_18918874_SNP [dm3] 3L_18925774_SNP [dm6]	A	T	3.393e^-4	0.988	INTRON CG32204 & 1 other
3R	9610764	3R_9610764_SNP [dm3] 3R_13785042_SNP [dm6]	C	T	3.396e^-4	0.988	SYNONYMOUS_CODING Dip-B DOWNSTREAM CR45590	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	385317	3L_385317_SNP [dm3] 3L_385317_SNP [dm6]	G	A	3.396e^-4	0.988	INTRON trh
2L	13733172	2L_13733172_SNP [dm3] 2L_13733172_SNP [dm6]	A	C	3.397e^-4	0.988	INTERGENIC
3L	8737464	3L_8737464_SNP [dm3] 3L_8744364_SNP [dm6]	T	G	3.401e^-4	0.988	INTRON Prm
3L	4496786	3L_4496786_SNP [dm3] 3L_4496786_SNP [dm6]	T	A	3.408e^-4	0.988	DOWNSTREAM CG13721 INTERGENIC	TF binding site mE1_TFBS_inv
3R	8241245	3R_8241245_SNP [dm3] 3R_12415523_SNP [dm6]	G	A	3.423e^-4	0.988	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3080382	X_3080382_DEL [dm3] X_3186349_DEL [dm6]	CGAAC	C	3.429e^-4	0.988	INTRON dnc
3L	4509511	3L_4509511_SNP [dm3] 3L_4509511_SNP [dm6]	T	C	3.433e^-4	0.988	INTERGENIC
X	2587335	X_2587335_SNP [dm3] X_2693302_SNP [dm6]	G	A	3.443e^-4	0.988	SYNONYMOUS_CODING CG2650 DOWNSTREAM per	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2424716	2L_2424716_SNP [dm3] 2L_2424716_SNP [dm6]	A	C	3.447e^-4	0.988	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3R	12428177	3R_12428177_INS [dm3] 3R_16602455_INS [dm6]	T	TTGGTGT	3.449e^-4	0.988	INTRON CG10345
3L	5224374	3L_5224374_SNP [dm3] 3L_5231274_SNP [dm6]	C	T	3.454e^-4	0.988	INTRON shep
3R	17328482	3R_17328482_SNP [dm3] 3R_21502760_SNP [dm6]	T	C	3.462e^-4	0.988	INTRON C15	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
4	358925	4_358925_SNP [dm3] 4_338299_SNP [dm6]	T	G	3.464e^-4	0.988	INTRON PMCA
2L	11935825	2L_11935825_SNP [dm3] 2L_11935825_SNP [dm6]	C	T	3.465e^-4	0.988	UPSTREAM Or33b DOWNSTREAM Or33a INTERGENIC
3R	9772864	3R_9772864_SNP [dm3] 3R_13947142_SNP [dm6]	A	T	3.479e^-4	0.988	INTERGENIC
2L	14734601	2L_14734601_DEL [dm3] 2L_14734601_DEL [dm6]	GA	G	3.482e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24466529	3R_24466529_SNP [dm3] 3R_28640807_SNP [dm6]	C	G	3.487e^-4	0.988	DOWNSTREAM CG14062 INTERGENIC	TF binding site mE1_TFBS_cad
2R	11792764	2R_11792764_SNP [dm3] 2R_15905259_SNP [dm6]	T	C	3.510e^-4	0.988	INTRON sli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19157927	3L_19157927_SNP [dm3] 3L_19164827_SNP [dm6]	C	A	3.517e^-4	0.988	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18070150	3L_18070150_SNP [dm3] 3L_18077050_SNP [dm6]	A	G	3.524e^-4	0.988	UPSTREAM CR45392 INTERGENIC
3L	6310682	3L_6310682_SNP [dm3] 3L_6317582_SNP [dm6]	G	C	3.534e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	12504432	2L_12504432_SNP [dm3] 2L_12504432_SNP [dm6]	A	G	3.539e^-4	0.988	UTR_5_PRIME bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	18918896	3L_18918896_SNP [dm3] 3L_18925796_SNP [dm6]	C	T	3.540e^-4	0.988	INTRON CG32204 & 1 other
3R	9739838	3R_9739838_SNP [dm3] 3R_13914116_SNP [dm6]	T	A	3.542e^-4	0.988	INTERGENIC
X	7063427	X_7063427_SNP [dm3] X_7169394_SNP [dm6]	A	G	3.543e^-4	0.988	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16277244	X_16277244_INS [dm3] X_16383211_INS [dm6]	A	AAATAATATATA...	3.545e^-4	0.988	INTRON CG9992	TF binding site BDTNP1_TFBS_dl
X	16149008	X_16149008_SNP [dm3] X_16254975_SNP [dm6]	A	C	3.555e^-4	0.988	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6298676	2L_6298676_SNP [dm3] 2L_6298676_SNP [dm6]	A	T	3.569e^-4	0.988	INTRON Ddr
2L	1232615	2L_1232615_SNP [dm3] 2L_1232615_SNP [dm6]	A	C	3.581e^-4	0.988	INTERGENIC
2L	9810293	2L_9810293_SNP [dm3] 2L_9810293_SNP [dm6]	A	G	3.587e^-4	0.988	INTRON nAChRalpha6
2L	16800484	2L_16800484_SNP [dm3] 2L_16800484_SNP [dm6]	A	G	3.596e^-4	0.988	NON_SYNONYMOUS_CODING Ugt36Bc
2L	18023549	2L_18023549_SNP [dm3] 2L_18023549_SNP [dm6]	G	A	3.600e^-4	0.988	INTRON rdo
3R	9739844	3R_9739844_SNP [dm3] 3R_13914122_SNP [dm6]	T	C	3.608e^-4	0.988	INTERGENIC
2L	16552177	2L_16552177_SNP [dm3] 2L_16552177_SNP [dm6]	C	A	3.622e^-4	0.988	INTRON CG42389	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
2L	587906	2L_587906_SNP [dm3] 2L_587906_SNP [dm6]	C	T	3.622e^-4	0.988	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	13443392	3R_13443392_SNP [dm3] 3R_17617670_SNP [dm6]	C	A	3.625e^-4	0.988	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	7086055	2L_7086055_SNP [dm3] 2L_7086055_SNP [dm6]	C	T	3.629e^-4	0.988	INTERGENIC
2L	4936064	2L_4936064_SNP [dm3] 2L_4936064_SNP [dm6]	T	A	3.633e^-4	0.988	INTRON hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	631219	2L_631219_SNP [dm3] 2L_631219_SNP [dm6]	C	A	3.655e^-4	0.988	INTERGENIC
3L	18622669	3L_18622669_SNP [dm3] 3L_18629569_SNP [dm6]	T	C	3.662e^-4	0.988	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9824206	2L_9824206_SNP [dm3] 2L_9824206_SNP [dm6]	C	G	3.663e^-4	0.988	INTRON nAChRalpha6
3L	9250087	3L_9250087_SNP [dm3] 3L_9256987_SNP [dm6]	T	G	3.665e^-4	0.988	INTRON GluRIB
3L	12727927	3L_12727927_DEL [dm3] 3L_12734827_DEL [dm6]	CGATTATATTAT...	C	3.666e^-4	0.988	UPSTREAM Ptp69D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	12727941	3L_12727941_SNP [dm3] 3L_12734841_SNP [dm6]	T	C	3.666e^-4	0.988	UPSTREAM Ptp69D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	12727944	3L_12727944_DEL [dm3] 3L_12734844_DEL [dm6]	TATACGA	T	3.666e^-4	0.988	UPSTREAM Ptp69D & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	12727895	3L_12727895_SNP [dm3] 3L_12734795_SNP [dm6]	T	C	3.670e^-4	0.988	UPSTREAM Ptp69D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16417216	3L_16417216_SNP [dm3] 3L_16424116_SNP [dm6]	A	T	3.671e^-4	0.988	INTRON CG33158 & 1 other
3L	16417217	3L_16417217_SNP [dm3] 3L_16424117_SNP [dm6]	A	T	3.671e^-4	0.988	INTRON CG33158 & 1 other
2L	2424709	2L_2424709_SNP [dm3] 2L_2424709_SNP [dm6]	A	T	3.671e^-4	0.988	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	2424787	2L_2424787_DEL [dm3] 2L_2424787_DEL [dm6]	GTGGACTGA	G	3.684e^-4	0.988	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3R	15972159	3R_15972159_SNP [dm3] 3R_20146437_SNP [dm6]	G	C	3.686e^-4	0.988	INTERGENIC
3L	10113166	3L_10113166_SNP [dm3] 3L_10120066_SNP [dm6]	T	C	3.699e^-4	0.988	INTRON dpr6
2R	9689492	2R_9689492_SNP [dm3] 2R_13801987_SNP [dm6]	T	C	3.712e^-4	0.988	INTRON Cpr50Cb
3R	14968609	3R_14968609_SNP [dm3] 3R_19142887_SNP [dm6]	G	A	3.714e^-4	0.988	INTRON Ppcs
3L	4251343	3L_4251343_SNP [dm3] 3L_4251343_SNP [dm6]	C	T	3.717e^-4	0.988	SYNONYMOUS_CODING ago	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	4821150	3L_4821150_SNP [dm3] 3L_4821150_SNP [dm6]	C	A	3.720e^-4	0.988	SYNONYMOUS_CODING Dhc64C
3L	13535714	3L_13535714_SNP [dm3] 3L_13542614_SNP [dm6]	G	A	3.722e^-4	0.988	INTRON bru-3
2L	17115774	2L_17115774_SNP [dm3] 2L_17115774_SNP [dm6]	G	A	3.740e^-4	0.988	INTERGENIC
3L	5524217	3L_5524217_SNP [dm3] 3L_5531117_SNP [dm6]	C	T	3.753e^-4	0.988	INTERGENIC
3R	13442768	3R_13442768_SNP [dm3] 3R_17617046_SNP [dm6]	A	G	3.766e^-4	0.988	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	13442769	3R_13442769_SNP [dm3] 3R_17617047_SNP [dm6]	A	C	3.766e^-4	0.988	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	13442771	3R_13442771_SNP [dm3] 3R_17617049_SNP [dm6]	T	C	3.766e^-4	0.988	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	3171938	X_3171938_SNP [dm3] X_3277905_SNP [dm6]	A	G	3.775e^-4	0.988	INTRON dnc
3R	9739796	3R_9739796_SNP [dm3] 3R_13914074_SNP [dm6]	G	A	3.777e^-4	0.988	INTERGENIC
3R	16239222	3R_16239222_SNP [dm3] 3R_20413500_SNP [dm6]	A	C	3.790e^-4	0.988	INTRON Gfrl
3R	16239223	3R_16239223_SNP [dm3] 3R_20413501_SNP [dm6]	G	A	3.790e^-4	0.988	INTRON Gfrl
3R	16239225	3R_16239225_INS [dm3] 3R_20413503_INS [dm6]	G	ATCT	3.790e^-4	0.988	INTRON Gfrl
3R	16239230	3R_16239230_INS [dm3] 3R_20413508_INS [dm6]	T	TAGAA	3.790e^-4	0.988	INTRON Gfrl
3R	16239277	3R_16239277_SNP [dm3] 3R_20413555_SNP [dm6]	G	A	3.794e^-4	0.988	INTRON Gfrl
2R	14855260	2R_14855260_SNP [dm3] 2R_18967755_SNP [dm6]	A	T	3.796e^-4	0.988	INTERGENIC
2L	9863706	2L_9863706_DEL [dm3] 2L_9863706_DEL [dm6]	CTC	C	3.808e^-4	0.988	INTRON nAChRalpha6	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19386860	2R_19386860_SNP [dm3] 2R_23499337_SNP [dm6]	T	C	3.813e^-4	0.988	UPSTREAM CG13558 INTERGENIC
3L	7157764	3L_7157764_INS [dm3] 3L_7164664_INS [dm6]	A	AAAATGATCAGA...	3.825e^-4	0.988	INTRON Dscam2
3R	20243586	3R_20243586_SNP [dm3] 3R_24417864_SNP [dm6]	A	G	3.832e^-4	0.988	INTRON nAChRalpha1
X	11058286	X_11058286_SNP [dm3] X_11164253_SNP [dm6]	A	G	3.837e^-4	0.988	UTR_3_PRIME Dlic
3L	12145243	3L_12145243_SNP [dm3] 3L_12152143_SNP [dm6]	T	G	3.845e^-4	0.988	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2L	13341327	2L_13341327_SNP [dm3] 2L_13341327_SNP [dm6]	A	C	3.850e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	10288766	2L_10288766_SNP [dm3] 2L_10288766_SNP [dm6]	A	C	3.857e^-4	0.988	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
2R	2989569	2R_2989569_SNP [dm3] 2R_7102064_SNP [dm6]	C	T	3.865e^-4	0.988	INTRON esn
3L	3883534	3L_3883534_SNP [dm3] 3L_3883534_SNP [dm6]	A	G	3.867e^-4	0.988	DOWNSTREAM CR43917 INTERGENIC
3L	1584730	3L_1584730_SNP [dm3] 3L_1584730_SNP [dm6]	G	A	3.867e^-4	0.988	INTRON CG13917
3L	3883537	3L_3883537_SNP [dm3] 3L_3883537_SNP [dm6]	C	T	3.869e^-4	0.988	DOWNSTREAM CR43917 INTERGENIC
X	18492885	X_18492885_SNP [dm3] X_18598852_SNP [dm6]	C	T	3.873e^-4	0.988	INTERGENIC
3L	17045886	3L_17045886_SNP [dm3] 3L_17052786_SNP [dm6]	T	A	3.880e^-4	0.988	SYNONYMOUS_CODING rogdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26804860	3R_26804860_SNP [dm3] 3R_30979138_SNP [dm6]	C	A	3.883e^-4	0.988	INTRON 5-HT7
2R	14275186	2R_14275186_SNP [dm3] 2R_18387681_SNP [dm6]	T	C	3.888e^-4	0.988	UPSTREAM IM3 DOWNSTREAM IM2 INTERGENIC
3R	12005397	3R_12005397_SNP [dm3] 3R_16179675_SNP [dm6]	A	T	3.891e^-4	0.988	SYNONYMOUS_CODING CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12005403	3R_12005403_SNP [dm3] 3R_16179681_SNP [dm6]	G	T	3.891e^-4	0.988	SYNONYMOUS_CODING CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9710925	3R_9710925_SNP [dm3] 3R_13885203_SNP [dm6]	A	G	3.897e^-4	0.988	INTERGENIC
2L	16525412	2L_16525412_SNP [dm3] 2L_16525412_SNP [dm6]	G	A	3.900e^-4	0.988	INTRON CG5953
3L	12369459	3L_12369459_SNP [dm3] 3L_12376359_SNP [dm6]	A	T	3.906e^-4	0.988	INTRON Ncc69
X	7769480	X_7769480_SNP [dm3] X_7875447_SNP [dm6]	C	T	3.911e^-4	0.988	SYNONYMOUS_CODING Ir7c
2L	8482901	2L_8482901_SNP [dm3] 2L_8482901_SNP [dm6]	C	T	3.912e^-4	0.988	UTR_3_PRIME CG43796 UPSTREAM tRNA:CR31892 INTRON d	TF binding site mE1_TFBS_chinmo
X	14076388	X_14076388_SNP [dm3] X_14182355_SNP [dm6]	G	A	3.912e^-4	0.988	SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21879916	X_21879916_SNP [dm3] X_22478080_SNP [dm6]	A	G	3.923e^-4	0.988	UPSTREAM CG12576 INTRON CG12576
3R	22410745	3R_22410745_SNP [dm3] 3R_26585023_SNP [dm6]	A	G	3.924e^-4	0.988	NON_SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12426233	3L_12426233_SNP [dm3] 3L_12433133_SNP [dm6]	G	T	3.929e^-4	0.988	UPSTREAM toe INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	11693042	2R_11693042_INS [dm3] 2R_15805537_INS [dm6]	C	CCATAC	3.930e^-4	0.988	INTRON tun & 1 other
2L	2007687	2L_2007687_SNP [dm3] 2L_2007687_SNP [dm6]	T	A	3.933e^-4	0.988	UPSTREAM CG15353 & 1 other EXON CR45712
2L	4483452	2L_4483452_SNP [dm3] 2L_4483452_SNP [dm6]	T	C	3.951e^-4	0.988	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21598191	3R_21598191_SNP [dm3] 3R_25772469_SNP [dm6]	T	C	3.958e^-4	0.988	DOWNSTREAM CG17198 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
2R	20199873	2R_20199873_SNP [dm3] 2R_24312350_SNP [dm6]	A	G	3.963e^-4	0.988	UTR_3_PRIME betaTub60D	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	18391957	X_18391957_SNP [dm3] X_18497924_SNP [dm6]	T	C	3.987e^-4	0.988	INTRON GalNAc-T2
3L	12141397	3L_12141397_SNP [dm3] 3L_12148297_SNP [dm6]	A	T	3.994e^-4	0.988	UPSTREAM eap INTRON Nrx-IV
3L	7646760	3L_7646760_SNP [dm3] 3L_7653660_SNP [dm6]	C	T	3.999e^-4	0.988	SYNONYMOUS_CODING CG7492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	15276760	3R_15276760_SNP [dm3] 3R_19451038_SNP [dm6]	C	G	4.022e^-4	0.988	INTRON CG31221
2R	12711851	2R_12711851_SNP [dm3] 2R_16824346_SNP [dm6]	C	G	4.024e^-4	0.988	UPSTREAM CG34459 INTERGENIC
2L	2424906	2L_2424906_SNP [dm3] 2L_2424906_SNP [dm6]	A	T	4.027e^-4	0.988	SYNONYMOUS_CODING CG44139 DOWNSTREAM CG9886
3R	9557591	3R_9557591_INS [dm3] 3R_13731869_INS [dm6]	A	AACTA	4.035e^-4	0.988	INTRON CG34383	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16277211	X_16277211_INS [dm3] X_16383178_INS [dm6]	G	GG	4.048e^-4	0.988	INTRON CG9992	TF binding site BDTNP1_TFBS_dl
2R	15052893	2R_15052893_SNP [dm3] 2R_19165388_SNP [dm6]	A	G	4.052e^-4	0.988	START_GAINED CG10737 UTR_5_PRIME CG10737 INTRON CG10737
3L	5234898	3L_5234898_SNP [dm3] 3L_5241798_SNP [dm6]	T	A	4.054e^-4	0.988	INTRON shep
X	6547841	X_6547841_SNP [dm3] X_6653808_SNP [dm6]	A	C	4.066e^-4	0.988	UPSTREAM l_1_G0148 DOWNSTREAM pigs INTRON CG3226	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	10812553	X_10812553_SNP [dm3] X_10918520_SNP [dm6]	G	A	4.068e^-4	0.988	SPLICE_SITE_REGION CG43901 INTRON CG43901	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	22410746	3R_22410746_SNP [dm3] 3R_26585024_SNP [dm6]	C	T	4.079e^-4	0.988	NON_SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10384688	3R_10384688_SNP [dm3] 3R_14558966_SNP [dm6]	A	G	4.083e^-4	0.988	UPSTREAM Pde6 DOWNSTREAM CG14854 INTERGENIC
2L	19926794	2L_19926794_INS [dm3] 2L_19926794_INS [dm6]	T	TAAATAAGTAGACT...	4.084e^-4	0.988	INTRON sick
2L	13936553	2L_13936553_SNP [dm3] 2L_13936553_SNP [dm6]	G	T	4.090e^-4	0.988	INTRON Ance-3
X	16993142	X_16993142_DEL [dm3] X_17099109_DEL [dm6]	GATATGCATGG...	G	4.093e^-4	0.988	DOWNSTREAM CG16700 INTRON CG4991
3R	13443391	3R_13443391_SNP [dm3] 3R_17617669_SNP [dm6]	C	A	4.095e^-4	0.988	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	13331805	2L_13331805_SNP [dm3] 2L_13331805_SNP [dm6]	G	A	4.097e^-4	0.988	UPSTREAM CG43778 INTERGENIC
2R	12177468	2R_12177468_SNP [dm3] 2R_16289963_SNP [dm6]	T	A	4.114e^-4	0.988	SYNONYMOUS_CODING JhI-26 UPSTREAM CG30099 EXON CR43730
2R	17142266	2R_17142266_SNP [dm3] 2R_21254761_SNP [dm6]	A	G	4.116e^-4	0.988	UPSTREAM Rgk3 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11514340	3L_11514340_SNP [dm3] 3L_11521240_SNP [dm6]	A	C	4.118e^-4	0.988	UTR_3_PRIME CG11714 UPSTREAM Fuca
2L	3960324	2L_3960324_SNP [dm3] 2L_3960324_SNP [dm6]	G	T	4.144e^-4	0.988	INTRON fred
2L	1903034	2L_1903034_SNP [dm3] 2L_1903034_SNP [dm6]	G	T	4.147e^-4	0.988	INTRON CG7337
X	3429785	X_3429785_SNP [dm3] X_3535752_SNP [dm6]	C	T	4.150e^-4	0.988	INTRON CG32791	TF binding site mE1_TFBS_inv
2L	17555012	2L_17555012_SNP [dm3] 2L_17555012_SNP [dm6]	T	A	4.163e^-4	0.988	SYNONYMOUS_CODING CG7094	TF binding site mE1_TFBS_sens
3L	7112857	3L_7112857_SNP [dm3] 3L_7119757_SNP [dm6]	A	T	4.164e^-4	0.988	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3049935	3L_3049935_SNP [dm3] 3L_3049935_SNP [dm6]	A	G	4.169e^-4	0.988	UTR_3_PRIME Sk2 UPSTREAM CG32485	TF binding site mE1_TFBS_cad
3L	4835211	3L_4835211_SNP [dm3] 3L_4835211_SNP [dm6]	C	A	4.182e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9709857	3L_9709857_SNP [dm3] 3L_9716757_SNP [dm6]	C	G	4.191e^-4	0.988	UTR_3_PRIME vsg UPSTREAM snmRNA:838
X	7905797	X_7905797_SNP [dm3] X_8011764_SNP [dm6]	G	C	4.198e^-4	0.988	INTRON Tbh
3L	9043252	3L_9043252_SNP [dm3] 3L_9050152_SNP [dm6]	G	C	4.207e^-4	0.988	SYNONYMOUS_CODING Argk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1610053	3L_1610053_SNP [dm3] 3L_1610053_SNP [dm6]	C	T	4.214e^-4	0.988	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
2L	16268452	2L_16268452_SNP [dm3] 2L_16268452_SNP [dm6]	C	T	4.220e^-4	0.988	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11933255	3L_11933255_SNP [dm3] 3L_11940155_SNP [dm6]	T	A	4.230e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6734620	2L_6734620_SNP [dm3] 2L_6734620_SNP [dm6]	T	C	4.236e^-4	0.988	INTRON TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14449333	3R_14449333_SNP [dm3] 3R_18623611_SNP [dm6]	C	A	4.250e^-4	0.988	INTRON qin
X	2798698	X_2798698_SNP [dm3] X_2904665_SNP [dm6]	A	G	4.254e^-4	0.988	INTRON kirre
3R	24806390	3R_24806390_SNP [dm3] 3R_28980668_SNP [dm6]	T	C	4.254e^-4	0.988	INTERGENIC
3R	20960613	3R_20960613_SNP [dm3] 3R_25134891_SNP [dm6]	G	C	4.267e^-4	0.988	INTRON Bili	TF binding site BDTNP1_TFBS_bcd
3R	14460584	3R_14460584_SNP [dm3] 3R_18634862_SNP [dm6]	C	T	4.293e^-4	0.988	INTRON qin & 1 other
2L	11967196	2L_11967196_SNP [dm3] 2L_11967196_SNP [dm6]	A	G	4.295e^-4	0.988	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	2424711	2L_2424711_SNP [dm3] 2L_2424711_SNP [dm6]	A	T	4.295e^-4	0.988	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	10620718	2L_10620718_SNP [dm3] 2L_10620718_SNP [dm6]	G	A	4.296e^-4	0.988	INTRON Trim9
2R	15692017	2R_15692017_SNP [dm3] 2R_19804512_SNP [dm6]	C	T	4.297e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	13471488	3L_13471488_SNP [dm3] 3L_13478388_SNP [dm6]	C	G	4.304e^-4	0.988	NON_SYNONYMOUS_CODING stv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2424776	2L_2424776_SNP [dm3] 2L_2424776_SNP [dm6]	A	G	4.308e^-4	0.988	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3L	13935379	3L_13935379_SNP [dm3] 3L_13942279_SNP [dm6]	A	G	4.311e^-4	0.988	INTRON CG32137	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	14236428	X_14236428_SNP [dm3] X_14342395_SNP [dm6]	G	T	4.314e^-4	0.988	INTRON dpr8
3R	24502598	3R_24502598_SNP [dm3] 3R_28676876_SNP [dm6]	A	C	4.326e^-4	0.988	INTRON CG9990
2L	11833898	2L_11833898_SNP [dm3] 2L_11833898_SNP [dm6]	A	C	4.340e^-4	0.988	UPSTREAM CG45011 & 1 other INTRON Pde1c
X	6818700	X_6818700_SNP [dm3] X_6924667_SNP [dm6]	C	T	4.353e^-4	0.988	INTRON CG14431
3L	16546419	3L_16546419_SNP [dm3] 3L_16553319_SNP [dm6]	G	A	4.354e^-4	0.988	INTERGENIC
3R	15307444	3R_15307444_SNP [dm3] 3R_19481722_SNP [dm6]	G	C	4.359e^-4	0.988	INTRON Dys
3L	17750910	3L_17750910_SNP [dm3] 3L_17757810_SNP [dm6]	G	T	4.362e^-4	0.988	UPSTREAM Msi & 1 other INTRON Adgf-A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2424785	2L_2424785_SNP [dm3] 2L_2424785_SNP [dm6]	A	G	4.363e^-4	0.988	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3L	14206034	3L_14206034_SNP [dm3] 3L_14212934_SNP [dm6]	A	T	4.368e^-4	0.988	INTRON nuf	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22996582	3R_22996582_SNP [dm3] 3R_27170860_SNP [dm6]	C	T	4.369e^-4	0.988	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	8876706	2L_8876706_SNP [dm3] 2L_8876706_SNP [dm6]	T	A	4.370e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	5223853	3L_5223853_SNP [dm3] 3L_5230753_SNP [dm6]	T	C	4.376e^-4	0.988	INTRON shep
2L	10191602	2L_10191602_SNP [dm3] 2L_10191602_SNP [dm6]	G	A	4.378e^-4	0.988	SPLICE_SITE_REGION Sur UPSTREAM CG31874 INTRON Sur
X	7062871	X_7062871_SNP [dm3] X_7168838_SNP [dm6]	T	C	4.382e^-4	0.988	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7047865	3L_7047865_SNP [dm3] 3L_7054765_SNP [dm6]	T	C	4.386e^-4	0.988	INTERGENIC
X	4793688	X_4793688_SNP [dm3] X_4899655_SNP [dm6]	G	C	4.386e^-4	0.988	INTRON CG42594	TF binding site mE1_TFBS_HSA
2R	14032794	2R_14032794_SNP [dm3] 2R_18145289_SNP [dm6]	A	G	4.386e^-4	0.988	INTRON pAbp	TF binding site mE1_TFBS_cad
3L	13929983	3L_13929983_SNP [dm3] 3L_13936883_SNP [dm6]	A	T	4.388e^-4	0.988	INTERGENIC
3L	4034174	3L_4034174_SNP [dm3] 3L_4034174_SNP [dm6]	C	T	4.389e^-4	0.988	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d DOWNSTREAM Gr64d EXON CR45042
2R	15811628	2R_15811628_SNP [dm3] 2R_19924123_SNP [dm6]	T	A	4.389e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_cad
3R	20930462	3R_20930462_SNP [dm3] 3R_25104740_SNP [dm6]	G	A	4.391e^-4	0.988	SYNONYMOUS_CODING CG34027
3R	12203417	3R_12203417_SNP [dm3] 3R_16377695_SNP [dm6]	G	A	4.399e^-4	0.988	SYNONYMOUS_CODING ss	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13948811	2L_13948811_SNP [dm3] 2L_13948811_SNP [dm6]	A	G	4.406e^-4	0.988	INTRON Ance-3
3L	13930657	3L_13930657_SNP [dm3] 3L_13937557_SNP [dm6]	C	T	4.417e^-4	0.988	INTERGENIC
2L	13848508	2L_13848508_SNP [dm3] 2L_13848508_SNP [dm6]	T	C	4.428e^-4	0.988	SYNONYMOUS_CODING CG7953 UPSTREAM CG7968 DOWNSTREAM CG7916 INTRON CenG1A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	565720	3L_565720_SNP [dm3] 3L_565720_SNP [dm6]	A	T	4.441e^-4	0.988	INTRON hipk
3R	659740	3R_659740_SNP [dm3] 3R_4834018_SNP [dm6]	C	T	4.444e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_sens
X	13343853	X_13343853_INS [dm3] X_13449820_INS [dm6]	T	TCTTT	4.450e^-4	0.988	INTRON Neto	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4051406	3L_4051406_SNP [dm3] 3L_4051406_SNP [dm6]	G	T	4.457e^-4	0.988	INTRON CG1136	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	6107952	2L_6107952_SNP [dm3] 2L_6107952_SNP [dm6]	T	C	4.475e^-4	0.988	INTRON stai
X	9283746	X_9283746_SNP [dm3] X_9389713_SNP [dm6]	G	A	4.478e^-4	0.988	INTRON mgl
2R	11491739	2R_11491739_SNP [dm3] 2R_15604234_SNP [dm6]	C	A	4.497e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	9560052	3R_9560052_SNP [dm3] 3R_13734330_SNP [dm6]	G	A	4.518e^-4	0.988	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9151882	2R_9151882_SNP [dm3] 2R_13264377_SNP [dm6]	T	A	4.519e^-4	0.988	SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
3L	16482956	3L_16482956_SNP [dm3] 3L_16489856_SNP [dm6]	C	A	4.521e^-4	0.988	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	17821475	3R_17821475_SNP [dm3] 3R_21995753_SNP [dm6]	T	C	4.522e^-4	0.988	SYNONYMOUS_CODING Eip93F
3L	18924386	3L_18924386_SNP [dm3] 3L_18931286_SNP [dm6]	A	G	4.524e^-4	0.988	INTRON CG32204	TF binding site mE1_TFBS_inv
3R	14624397	3R_14624397_SNP [dm3] 3R_18798675_SNP [dm6]	A	C	4.539e^-4	0.988	DOWNSTREAM CG18208 INTERGENIC
2L	7749587	2L_7749587_SNP [dm3] 2L_7749587_SNP [dm6]	C	T	4.543e^-4	0.988	INTERGENIC
3L	14877249	3L_14877249_INS [dm3] 3L_14884149_INS [dm6]	A	AA	4.547e^-4	0.988	INTERGENIC
2L	18234273	2L_18234273_SNP [dm3] 2L_18234273_SNP [dm6]	G	T	4.557e^-4	0.988	INTRON CG42750
2R	16677959	2R_16677959_SNP [dm3] 2R_20790454_SNP [dm6]	T	A	4.569e^-4	0.988	UTR_3_PRIME CG43677 UPSTREAM CG43667
3R	23207459	3R_23207459_SNP [dm3] 3R_27381737_SNP [dm6]	T	C	4.594e^-4	0.988	UTR_3_PRIME side INTRON side
3R	17328476	3R_17328476_SNP [dm3] 3R_21502754_SNP [dm6]	A	T	4.614e^-4	0.988	INTRON C15	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11600031	3L_11600031_SNP [dm3] 3L_11606931_SNP [dm6]	G	A	4.626e^-4	0.988	SYNONYMOUS_CODING CG6091
2L	6466356	2L_6466356_SNP [dm3] 2L_6466356_SNP [dm6]	T	A	4.642e^-4	0.988	UTR_3_PRIME CG9531 UPSTREAM CG16947 DOWNSTREAM CG9531
2R	3187967	2R_3187967_SNP [dm3] 2R_7300462_SNP [dm6]	G	T	4.643e^-4	0.988	UTR_3_PRIME pwn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5496101	3L_5496101_SNP [dm3] 3L_5503001_SNP [dm6]	T	A	4.665e^-4	0.988	DOWNSTREAM CG34342 INTERGENIC
2R	17686654	2R_17686654_SNP [dm3] 2R_21799149_SNP [dm6]	A	T	4.684e^-4	0.988	SYNONYMOUS_CODING CG18735 DOWNSTREAM CG4386
2R	5931751	2R_5931751_SNP [dm3] 2R_10044246_SNP [dm6]	A	T	4.687e^-4	0.988	UPSTREAM CG34220 INTRON oys EXON CR44295
X	3171941	X_3171941_SNP [dm3] X_3277908_SNP [dm6]	C	T	4.698e^-4	0.988	INTRON dnc
2R	17968426	2R_17968426_SNP [dm3] 2R_22080921_SNP [dm6]	T	C	4.700e^-4	0.988	INTRON Synj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13427259	2L_13427259_SNP [dm3] 2L_13427259_SNP [dm6]	G	C	4.702e^-4	0.988	INTRON CG42784
3L	6980482	3L_6980482_SNP [dm3] 3L_6987382_SNP [dm6]	C	T	4.710e^-4	0.988	INTERGENIC
2R	16190575	2R_16190575_SNP [dm3] 2R_20303070_SNP [dm6]	G	C	4.713e^-4	0.988	UPSTREAM CR44641 DOWNSTREAM CR44640 INTERGENIC
3L	13241894	3L_13241894_SNP [dm3] 3L_13248794_SNP [dm6]	A	G	4.720e^-4	0.988	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
2L	18234303	2L_18234303_SNP [dm3] 2L_18234303_SNP [dm6]	T	G	4.725e^-4	0.988	INTRON CG42750
X	2730278	X_2730278_SNP [dm3] X_2836245_SNP [dm6]	A	G	4.728e^-4	0.988	INTRON kirre
3L	2825393	3L_2825393_SNP [dm3] 3L_2825393_SNP [dm6]	C	T	4.737e^-4	0.988	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4793808	X_4793808_SNP [dm3] X_4899775_SNP [dm6]	T	C	4.742e^-4	0.988	INTRON CG42594
3R	23009100	3R_23009100_SNP [dm3] 3R_27183378_SNP [dm6]	G	A	4.762e^-4	0.988	INTRON Ser	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9562433	3R_9562433_SNP [dm3] 3R_13736711_SNP [dm6]	T	G	4.768e^-4	0.988	INTRON CG34383
3L	21189528	3L_21189528_SNP [dm3] 3L_21196428_SNP [dm6]	T	C	4.775e^-4	0.988	UPSTREAM CG34261 DOWNSTREAM CG33054 INTRON park	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10034531	2R_10034531_DEL [dm3] 2R_14147026_DEL [dm6]	TT	T	4.776e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	4793963	X_4793963_SNP [dm3] X_4899930_SNP [dm6]	A	G	4.780e^-4	0.988	INTRON CG42594
3L	18294470	3L_18294470_DEL [dm3] 3L_18301370_DEL [dm6]	ATTTTTTGA	T	4.786e^-4	0.988	UPSTREAM CG13700 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16193903	3L_16193903_SNP [dm3] 3L_16200803_SNP [dm6]	G	C	4.786e^-4	0.988	SYNONYMOUS_CODING CG33689 UPSTREAM CG33690 DOWNSTREAM CG33688
2L	1307495	2L_1307495_SNP [dm3] 2L_1307495_SNP [dm6]	A	G	4.788e^-4	0.988	INTERGENIC
X	18391852	X_18391852_SNP [dm3] X_18497819_SNP [dm6]	C	T	4.788e^-4	0.988	INTRON GalNAc-T2
X	9064344	X_9064344_SNP [dm3] X_9170311_SNP [dm6]	T	C	4.792e^-4	0.988	SYNONYMOUS_CODING mei-P26
2L	9404255	2L_9404255_SNP [dm3] 2L_9404255_SNP [dm6]	T	C	4.820e^-4	0.988	INTRON Shawl
2L	16523457	2L_16523457_SNP [dm3] 2L_16523457_SNP [dm6]	G	A	4.827e^-4	0.988	INTRON CG5953	TF binding site BDTNP1_TFBS_dl
3R	18022968	3R_18022968_SNP [dm3] 3R_22197246_SNP [dm6]	T	A	4.828e^-4	0.988	INTRON SKIP & 1 other
2L	10906788	2L_10906788_SNP [dm3] 2L_10906788_SNP [dm6]	C	T	4.833e^-4	0.988	INTRON CG7309
3R	6926659	3R_6926659_SNP [dm3] 3R_11100937_SNP [dm6]	A	C	4.836e^-4	0.988	UPSTREAM CR45579 INTERGENIC
2R	19499763	2R_19499763_SNP [dm3] 2R_23612240_SNP [dm6]	T	C	4.837e^-4	0.988	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16677943	2R_16677943_SNP [dm3] 2R_20790438_SNP [dm6]	G	T	4.843e^-4	0.988	UTR_3_PRIME CG43677 UPSTREAM CG43667
3L	5376512	3L_5376512_SNP [dm3] 3L_5383412_SNP [dm6]	C	T	4.845e^-4	0.988	UPSTREAM Ir64a INTERGENIC
2L	6702493	2L_6702493_SNP [dm3] 2L_6702493_SNP [dm6]	T	C	4.851e^-4	0.988	INTRON Tsp
3R	27416129	3R_27416129_SNP [dm3] 3R_31590407_SNP [dm6]	A	T	4.852e^-4	0.988	UPSTREAM CG1638 DOWNSTREAM CG1635 EXON CR45190
3R	23207486	3R_23207486_SNP [dm3] 3R_27381764_SNP [dm6]	C	T	4.858e^-4	0.988	UTR_3_PRIME side INTRON side
3L	12153846	3L_12153846_SNP [dm3] 3L_12160746_SNP [dm6]	T	C	4.861e^-4	0.988	INTRON CG9760
3L	10013105	3L_10013105_SNP [dm3] 3L_10020005_SNP [dm6]	C	G	4.865e^-4	0.988	INTRON dpr6
3L	6150015	3L_6150015_DEL [dm3] 3L_6156915_DEL [dm6]	TAGTC	ACA	4.878e^-4	0.988	INTRON CG13297
X	5387482	X_5387482_SNP [dm3] X_5493449_SNP [dm6]	T	A	4.892e^-4	0.988	UTR_3_PRIME SPR & 1 other DOWNSTREAM frma
2L	11881645	2L_11881645_SNP [dm3] 2L_11881645_SNP [dm6]	T	A	4.894e^-4	0.988	INTRON Pde1c	TF binding site mE1_TFBS_inv
2L	13259165	2L_13259165_SNP [dm3] 2L_13259165_SNP [dm6]	G	T	4.894e^-4	0.988	SYNONYMOUS_CODING CG31730 DOWNSTREAM CG31851
2R	8926300	2R_8926300_SNP [dm3] 2R_13038795_SNP [dm6]	G	T	4.905e^-4	0.988	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8737302	3L_8737302_INS [dm3] 3L_8744202_INS [dm6]	C	CC	4.911e^-4	0.988	INTRON Prm
3R	8241002	3R_8241002_SNP [dm3] 3R_12415280_SNP [dm6]	T	C	4.914e^-4	0.988	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_sens
2R	13820149	2R_13820149_SNP [dm3] 2R_17932644_SNP [dm6]	T	C	4.917e^-4	0.988	INTERGENIC
2R	19112949	2R_19112949_SNP [dm3] 2R_23225426_SNP [dm6]	T	A	4.923e^-4	0.988	INTERGENIC
3R	13874376	3R_13874376_SNP [dm3] 3R_18048654_SNP [dm6]	G	A	4.926e^-4	0.988	INTRON htl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9924032	2R_9924032_SNP [dm3] 2R_14036527_SNP [dm6]	A	G	4.929e^-4	0.988	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	3837388	3L_3837388_SNP [dm3] 3L_3837388_SNP [dm6]	G	A	4.934e^-4	0.988	SYNONYMOUS_CODING enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18278014	2R_18278014_SNP [dm3] 2R_22390509_SNP [dm6]	A	G	4.936e^-4	0.988	INTRON CG13506
2L	9784244	2L_9784244_SNP [dm3] 2L_9784244_SNP [dm6]	G	A	4.939e^-4	0.988	INTRON IP3K1
2R	3143004	2R_3143004_SNP [dm3] 2R_7255499_SNP [dm6]	T	A	4.939e^-4	0.988	EXON CR45280
2L	6231890	2L_6231890_SNP [dm3] 2L_6231890_SNP [dm6]	G	A	4.941e^-4	0.988	EXON CR44823
3L	4051424	3L_4051424_DEL [dm3] 3L_4051424_DEL [dm6]	GT	G	4.942e^-4	0.988	INTRON CG1136	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4186998	3L_4186998_SNP [dm3] 3L_4186998_SNP [dm6]	A	T	4.945e^-4	0.988	UPSTREAM VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	9562637	3R_9562637_SNP [dm3] 3R_13736915_SNP [dm6]	A	G	4.950e^-4	0.988	INTRON CG34383
3L	1286947	3L_1286947_SNP [dm3] 3L_1286947_SNP [dm6]	T	A	4.966e^-4	0.988	INTRON CG32333
X	9179570	X_9179570_SNP [dm3] X_9285537_SNP [dm6]	C	A	4.973e^-4	0.988	INTRON lz
2L	12268179	2L_12268179_SNP [dm3] 2L_12268179_SNP [dm6]	C	G	4.973e^-4	0.988	INTRON aret
3L	10780405	3L_10780405_SNP [dm3] 3L_10787305_SNP [dm6]	T	G	4.984e^-4	0.988	INTERGENIC
2R	5940909	2R_5940909_SNP [dm3] 2R_10053404_SNP [dm6]	T	A	4.991e^-4	0.988	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
3R	660072	3R_660072_SNP [dm3] 3R_4834350_SNP [dm6]	T	A	4.996e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	5234520	2R_5234520_SNP [dm3] 2R_9347015_SNP [dm6]	C	T	4.997e^-4	0.988	UTR_3_PRIME Or45a INTRON CG13954 & 1 other
2R	11886613	2R_11886613_SNP [dm3] 2R_15999108_SNP [dm6]	T	C	4.999e^-4	0.988	INTRON ATPCL
3L	1854204	3L_1854204_SNP [dm3] 3L_1854204_SNP [dm6]	G	T	5.001e^-4	0.988	INTRON CG13936
3L	10910269	3L_10910269_SNP [dm3] 3L_10917169_SNP [dm6]	A	C	5.010e^-4	0.988	INTERGENIC
2R	18801389	2R_18801389_SNP [dm3] 2R_22913866_SNP [dm6]	A	T	5.016e^-4	0.988	INTRON nahoda
2L	2424610	2L_2424610_SNP [dm3] 2L_2424610_SNP [dm6]	C	T	5.027e^-4	0.988	UTR_3_PRIME CG9886 UPSTREAM CG44139
X	14510922	X_14510922_SNP [dm3] X_14616889_SNP [dm6]	C	T	5.036e^-4	0.988	INTRON NetA
3L	4821061	3L_4821061_SNP [dm3] 3L_4821061_SNP [dm6]	A	T	5.051e^-4	0.988	INTRON Dhc64C
3R	9772845	3R_9772845_SNP [dm3] 3R_13947123_SNP [dm6]	A	G	5.054e^-4	0.988	INTERGENIC
2R	14606467	2R_14606467_SNP [dm3] 2R_18718962_SNP [dm6]	G	A	5.054e^-4	0.988	UTR_5_PRIME Hs3st-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12567595	2L_12567595_SNP [dm3] 2L_12567595_SNP [dm6]	C	A	5.069e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16679880	2R_16679880_SNP [dm3] 2R_20792375_SNP [dm6]	T	A	5.072e^-4	0.988	UPSTREAM CG15225 & 1 other INTERGENIC
3L	7037021	3L_7037021_DEL [dm3] 3L_7043921_DEL [dm6]	TA	T	5.078e^-4	0.988	INTRON Mp
2L	9168491	2L_9168491_SNP [dm3] 2L_9168491_SNP [dm6]	C	T	5.084e^-4	0.988	INTRON tai
3R	26808928	3R_26808928_SNP [dm3] 3R_30983206_SNP [dm6]	A	G	5.086e^-4	0.988	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2419042	2L_2419042_SNP [dm3] 2L_2419042_SNP [dm6]	G	T	5.095e^-4	0.988	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_sens
3R	19901147	3R_19901147_SNP [dm3] 3R_24075425_SNP [dm6]	G	A	5.096e^-4	0.988	INTRON 4EHP
3R	12005268	3R_12005268_SNP [dm3] 3R_16179546_SNP [dm6]	G	A	5.098e^-4	0.988	SYNONYMOUS_CODING CG8925
3L	4820893	3L_4820893_SNP [dm3] 3L_4820893_SNP [dm6]	C	T	5.143e^-4	0.988	SYNONYMOUS_CODING Dhc64C
2L	7521877	2L_7521877_SNP [dm3] 2L_7521877_SNP [dm6]	A	T	5.146e^-4	0.988	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3193430	3L_3193430_SNP [dm3] 3L_3193430_SNP [dm6]	C	A	5.148e^-4	0.988	UPSTREAM CG14965 INTRON Hsp83	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Ubx
2R	16866487	2R_16866487_SNP [dm3] 2R_20978982_SNP [dm6]	C	T	5.149e^-4	0.988	UTR_5_PRIME CG9313 UPSTREAM CG15650 & 1 other
2R	9691708	2R_9691708_SNP [dm3] 2R_13804203_SNP [dm6]	A	C	5.168e^-4	0.988	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
3L	1286960	3L_1286960_SNP [dm3] 3L_1286960_SNP [dm6]	G	A	5.169e^-4	0.988	INTRON CG32333
X	15446918	X_15446918_SNP [dm3] X_15552885_SNP [dm6]	T	A	5.174e^-4	0.988	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2587821	X_2587821_SNP [dm3] X_2693788_SNP [dm6]	T	C	5.179e^-4	0.988	SYNONYMOUS_CODING CG2650 DOWNSTREAM CG2658	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	24052902	3L_24052902_SNP [dm3] 3L_24059802_SNP [dm6]	G	A	5.180e^-4	0.988	INTERGENIC
3R	18022958	3R_18022958_SNP [dm3] 3R_22197236_SNP [dm6]	A	G	5.181e^-4	0.988	INTRON SKIP & 1 other
2L	2008359	2L_2008359_SNP [dm3] 2L_2008359_SNP [dm6]	T	A	5.185e^-4	0.988	UPSTREAM Nplp4 & 1 other DOWNSTREAM CR45712 INTERGENIC	TF binding site mE1_TFBS_cad
X	12116291	X_12116291_SNP [dm3] X_12222258_SNP [dm6]	C	T	5.207e^-4	0.988	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	2206714	3L_2206714_SNP [dm3] 3L_2206714_SNP [dm6]	T	A	5.213e^-4	0.988	INTERGENIC
2L	8176535	2L_8176535_SNP [dm3] 2L_8176535_SNP [dm6]	C	G	5.226e^-4	0.988	INTRON Piezo
2L	7224374	2L_7224374_SNP [dm3] 2L_7224374_SNP [dm6]	A	T	5.241e^-4	0.988	UTR_3_PRIME Ndae1 INTRON Ndae1
2R	16679069	2R_16679069_SNP [dm3] 2R_20791564_SNP [dm6]	A	G	5.242e^-4	0.988	UPSTREAM CG43677 INTRON CG43668
X	15446956	X_15446956_SNP [dm3] X_15552923_SNP [dm6]	G	A	5.242e^-4	0.988	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9661764	X_9661764_SNP [dm3] X_9767731_SNP [dm6]	T	C	5.242e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10620255	2L_10620255_SNP [dm3] 2L_10620255_SNP [dm6]	T	C	5.246e^-4	0.988	INTRON Trim9
2R	6995916	2R_6995916_SNP [dm3] 2R_11108411_SNP [dm6]	A	G	5.249e^-4	0.988	INTRON luna
3R	9753845	3R_9753845_SNP [dm3] 3R_13928123_SNP [dm6]	G	A	5.258e^-4	0.988	INTERGENIC
2L	11092085	2L_11092085_SNP [dm3] 2L_11092085_SNP [dm6]	A	C	5.259e^-4	0.988	SYNONYMOUS_CODING CG4705
3L	12141421	3L_12141421_SNP [dm3] 3L_12148321_SNP [dm6]	A	G	5.259e^-4	0.988	UPSTREAM eap INTRON Nrx-IV
4	558605	4_558605_SNP [dm3] 4_537979_SNP [dm6]	C	T	5.266e^-4	0.988	UTR_3_PRIME zfh2 DOWNSTREAM Thd1 INTRON zfh2	TF binding site mE1_TFBS_kn mE1_TFBS_zfh1
3R	5376183	3R_5376183_SNP [dm3] 3R_9550461_SNP [dm6]	G	T	5.284e^-4	0.988	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	9728038	3R_9728038_SNP [dm3] 3R_13902316_SNP [dm6]	T	G	5.298e^-4	0.988	NON_SYNONYMOUS_CODING ems	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	19535317	2R_19535317_SNP [dm3] 2R_23647794_SNP [dm6]	G	A	5.305e^-4	0.988	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	11833906	2L_11833906_SNP [dm3] 2L_11833906_SNP [dm6]	T	A	5.313e^-4	0.988	UPSTREAM CG45011 & 1 other INTRON Pde1c
3R	26808936	3R_26808936_SNP [dm3] 3R_30983214_SNP [dm6]	C	A	5.322e^-4	0.988	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7797779	2L_7797779_SNP [dm3] 2L_7797779_SNP [dm6]	T	A	5.325e^-4	0.988	INTRON Herp
3L	9916319	3L_9916319_SNP [dm3] 3L_9923219_SNP [dm6]	G	T	5.331e^-4	0.988	INTRON CG34356
3R	8241266	3R_8241266_SNP [dm3] 3R_12415544_SNP [dm6]	G	T	5.335e^-4	0.988	NON_SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6149517	3L_6149517_SNP [dm3] 3L_6156417_SNP [dm6]	C	T	5.337e^-4	0.988	DOWNSTREAM CG13297 INTERGENIC
2R	16658190	2R_16658190_SNP [dm3] 2R_20770685_SNP [dm6]	A	G	5.340e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	12023299	3L_12023299_SNP [dm3] 3L_12030199_SNP [dm6]	C	G	5.340e^-4	0.988	INTRON rols	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12356459	3L_12356459_DEL [dm3] 3L_12363359_DEL [dm6]	GTTGG	G	5.345e^-4	0.988	INTERGENIC
2L	1309777	2L_1309777_SNP [dm3] 2L_1309777_SNP [dm6]	G	A	5.349e^-4	0.988	INTERGENIC
2R	12283448	2R_12283448_SNP [dm3] 2R_16395943_SNP [dm6]	A	T	5.352e^-4	0.988	INTRON Sema-2b	TF binding site mE1_TFBS_inv
2R	10014082	2R_10014082_SNP [dm3] 2R_14126577_SNP [dm6]	T	G	5.353e^-4	0.988	INTRON Prosap
3R	13442897	3R_13442897_SNP [dm3] 3R_17617175_SNP [dm6]	A	G	5.355e^-4	0.988	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_zfh1
3R	16041602	3R_16041602_SNP [dm3] 3R_20215880_SNP [dm6]	A	T	5.355e^-4	0.988	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
3R	9772889	3R_9772889_SNP [dm3] 3R_13947167_SNP [dm6]	T	C	5.356e^-4	0.988	INTERGENIC
X	9938169	X_9938169_SNP [dm3] X_10044136_SNP [dm6]	G	A	5.362e^-4	0.988	NON_SYNONYMOUS_CODING Cht6 DOWNSTREAM CR45185 INTRON Cht6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5984376	X_5984376_SNP [dm3] X_6090343_SNP [dm6]	T	A	5.365e^-4	0.988	UPSTREAM raptor & 1 other INTRON Mipp2 & 1 other	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	9377376	2L_9377376_SNP [dm3] 2L_9377376_SNP [dm6]	T	C	5.371e^-4	0.988	INTRON Shawl
3L	1458625	3L_1458625_SNP [dm3] 3L_1458625_SNP [dm6]	G	A	5.371e^-4	0.988	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7399133	2L_7399133_SNP [dm3] 2L_7399133_SNP [dm6]	T	A	5.371e^-4	0.988	UPSTREAM CR44079 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19164167	X_19164167_SNP [dm3] X_19270134_SNP [dm6]	T	C	5.373e^-4	0.988	SYNONYMOUS_CODING Vav	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
2L	5707192	2L_5707192_SNP [dm3] 2L_5707192_SNP [dm6]	C	A	5.374e^-4	0.988	INTRON CG7236	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3410294	3R_3410294_SNP [dm3] 3R_7584572_SNP [dm6]	C	T	5.390e^-4	0.988	INTRON CG34127
2L	6732789	2L_6732789_SNP [dm3] 2L_6732789_SNP [dm6]	A	G	5.392e^-4	0.988	UPSTREAM TTLL3B DOWNSTREAM Liprin-alpha INTERGENIC
2L	2424778	2L_2424778_SNP [dm3] 2L_2424778_SNP [dm6]	A	G	5.403e^-4	0.988	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
X	8155508	X_8155508_DEL [dm3] X_8261475_DEL [dm6]	TCAAT	T	5.413e^-4	0.988	INTRON CG1632
3L	4034146	3L_4034146_DEL [dm3] 3L_4034146_DEL [dm6]	TA	T	5.414e^-4	0.988	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
2L	16758440	2L_16758440_SNP [dm3] 2L_16758440_SNP [dm6]	T	G	5.415e^-4	0.988	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
X	20838659	X_20838659_SNP [dm3] X_20967632_SNP [dm6]	A	G	5.419e^-4	0.988	INTERGENIC
3R	18129439	3R_18129439_SNP [dm3] 3R_22303717_SNP [dm6]	T	C	5.427e^-4	0.988	UTR_3_PRIME CG7084
2R	18278772	2R_18278772_SNP [dm3] 2R_22391267_SNP [dm6]	T	C	5.438e^-4	0.988	SPLICE_SITE_REGION CG13506 INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9797136	3R_9797136_SNP [dm3] 3R_13971414_SNP [dm6]	A	G	5.441e^-4	0.988	START_GAINED rdx UTR_5_PRIME rdx UPSTREAM CR43460 INTRON rdx	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13442120	3R_13442120_SNP [dm3] 3R_17616398_SNP [dm6]	A	C	5.445e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
3L	18906963	3L_18906963_SNP [dm3] 3L_18913863_SNP [dm6]	T	C	5.445e^-4	0.988	NON_SYNONYMOUS_CODING CG14077
3L	10013140	3L_10013140_SNP [dm3] 3L_10020040_SNP [dm6]	T	A	5.453e^-4	0.988	INTRON dpr6
2R	7910752	2R_7910752_SNP [dm3] 2R_12023247_SNP [dm6]	C	T	5.466e^-4	0.988	UTR_3_PRIME CG8964
2R	10207406	2R_10207406_SNP [dm3] 2R_14319901_SNP [dm6]	C	G	5.472e^-4	0.988	INTRON Shroom
2L	14263888	2L_14263888_SNP [dm3] 2L_14263888_SNP [dm6]	G	A	5.488e^-4	0.988	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	6984893	3L_6984893_SNP [dm3] 3L_6991793_SNP [dm6]	G	A	5.504e^-4	0.988	SYNONYMOUS_CODING bin
3R	25935548	3R_25935548_INS [dm3] 3R_30109826_INS [dm6]	G	GAT	5.515e^-4	0.988	INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12157587	2L_12157587_SNP [dm3] 2L_12157587_SNP [dm6]	A	G	5.518e^-4	0.988	INTRON CG31760
3L	4509563	3L_4509563_SNP [dm3] 3L_4509563_SNP [dm6]	T	C	5.519e^-4	0.988	INTERGENIC
3L	24081523	3L_24081523_SNP [dm3] 3L_24088423_SNP [dm6]	T	G	5.539e^-4	0.988	INTRON Snap25
2L	17399500	2L_17399500_SNP [dm3] 2L_17399500_SNP [dm6]	T	A	5.544e^-4	0.988	INTRON CLIP-190
2L	17399507	2L_17399507_SNP [dm3] 2L_17399507_SNP [dm6]	T	C	5.544e^-4	0.988	INTRON CLIP-190
X	9505885	X_9505885_SNP [dm3] X_9611852_SNP [dm6]	G	A	5.549e^-4	0.988	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8685385	3L_8685385_SNP [dm3] 3L_8692285_SNP [dm6]	T	A	5.550e^-4	0.988	UPSTREAM CR44526 INTERGENIC	TF binding site mE1_TFBS_cad
3L	16414144	3L_16414144_SNP [dm3] 3L_16421044_SNP [dm6]	T	A	5.551e^-4	0.988	SYNONYMOUS_CODING CG33158	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	2384136	3R_2384136_SNP [dm3] 3R_6558414_SNP [dm6]	A	C	5.554e^-4	0.988	DOWNSTREAM CG1137 INTRON dpr11
3L	17031977	3L_17031977_SNP [dm3] 3L_17038877_SNP [dm6]	G	A	5.559e^-4	0.988	SYNONYMOUS_CODING scaf6 UTR_3_PRIME scaf6	TF binding site mE1_TFBS_cad
2R	15754599	2R_15754599_SNP [dm3] 2R_19867094_SNP [dm6]	A	T	5.563e^-4	0.988	UPSTREAM Obp56i INTRON Obp56i
3R	659950	3R_659950_SNP [dm3] 3R_4834228_SNP [dm6]	A	C	5.575e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14648841	3R_14648841_SNP [dm3] 3R_18823119_SNP [dm6]	C	A	5.591e^-4	0.988	INTRON CG18208
2L	8384231	2L_8384231_SNP [dm3] 2L_8384231_SNP [dm6]	T	A	5.591e^-4	0.988	UPSTREAM CG13384 & 1 other DOWNSTREAM Rcd4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	15446998	X_15446998_SNP [dm3] X_15552965_SNP [dm6]	C	T	5.593e^-4	0.988	INTRON Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2008322	2L_2008322_SNP [dm3] 2L_2008322_SNP [dm6]	A	T	5.594e^-4	0.988	UPSTREAM Nplp4 & 1 other DOWNSTREAM CR45712 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12622130	3L_12622130_SNP [dm3] 3L_12629030_SNP [dm6]	C	T	5.628e^-4	0.988	INTRON CR32111
2R	13820038	2R_13820038_SNP [dm3] 2R_17932533_SNP [dm6]	G	A	5.641e^-4	0.988	INTERGENIC
3L	1083552	3L_1083552_SNP [dm3] 3L_1083552_SNP [dm6]	A	T	5.652e^-4	0.988	INTRON bab1	TF binding site BDTNP1_TFBS_dl
3R	12005328	3R_12005328_SNP [dm3] 3R_16179606_SNP [dm6]	T	C	5.653e^-4	0.988	SYNONYMOUS_CODING CG8925
2L	9313931	2L_9313931_SNP [dm3] 2L_9313931_SNP [dm6]	G	A	5.657e^-4	0.988	INTERGENIC
3L	6174109	3L_6174109_SNP [dm3] 3L_6181009_SNP [dm6]	A	G	5.660e^-4	0.988	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6174112	3L_6174112_SNP [dm3] 3L_6181012_SNP [dm6]	C	T	5.660e^-4	0.988	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17426761	2L_17426761_SNP [dm3] 2L_17426761_SNP [dm6]	G	A	5.660e^-4	0.988	INTRON Dif
3L	8317961	3L_8317961_SNP [dm3] 3L_8324861_SNP [dm6]	G	A	5.680e^-4	0.988	UPSTREAM CG34461 INTERGENIC
3R	13443201	3R_13443201_DEL [dm3] 3R_17617479_DEL [dm6]	AC	A	5.683e^-4	0.988	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	13820103	2R_13820103_SNP [dm3] 2R_17932598_SNP [dm6]	G	C	5.690e^-4	0.988	INTERGENIC
3R	16041104	3R_16041104_SNP [dm3] 3R_20215382_SNP [dm6]	A	G	5.692e^-4	0.988	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
3R	20520954	3R_20520954_SNP [dm3] 3R_24695232_SNP [dm6]	C	T	5.696e^-4	0.988	INTRON slo
3L	11255934	3L_11255934_SNP [dm3] 3L_11262834_SNP [dm6]	A	G	5.703e^-4	0.988	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4821286	3L_4821286_SNP [dm3] 3L_4821286_SNP [dm6]	G	A	5.706e^-4	0.988	INTRON Dhc64C
3L	4821292	3L_4821292_SNP [dm3] 3L_4821292_SNP [dm6]	A	G	5.706e^-4	0.988	INTRON Dhc64C
3L	4821302	3L_4821302_SNP [dm3] 3L_4821302_SNP [dm6]	A	T	5.706e^-4	0.988	INTRON Dhc64C
3L	4821304	3L_4821304_SNP [dm3] 3L_4821304_SNP [dm6]	A	C	5.706e^-4	0.988	INTRON Dhc64C
3L	4821308	3L_4821308_SNP [dm3] 3L_4821308_SNP [dm6]	C	G	5.706e^-4	0.988	INTRON Dhc64C
3L	4821313	3L_4821313_SNP [dm3] 3L_4821313_SNP [dm6]	A	G	5.706e^-4	0.988	INTRON Dhc64C
3L	4821337	3L_4821337_SNP [dm3] 3L_4821337_SNP [dm6]	G	A	5.706e^-4	0.988	INTRON Dhc64C
3L	4821495	3L_4821495_SNP [dm3] 3L_4821495_SNP [dm6]	C	T	5.706e^-4	0.988	INTRON Dhc64C
3L	4821605	3L_4821605_DEL [dm3] 3L_4821605_DEL [dm6]	CAG	T	5.706e^-4	0.988	INTRON Dhc64C
3R	21901135	3R_21901135_SNP [dm3] 3R_26075413_SNP [dm6]	A	C	5.721e^-4	0.988	INTERGENIC
3R	21901144	3R_21901144_SNP [dm3] 3R_26075422_SNP [dm6]	G	A	5.721e^-4	0.988	INTERGENIC
3L	12003995	3L_12003995_SNP [dm3] 3L_12010895_SNP [dm6]	C	G	5.727e^-4	0.988	NON_SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4782643	X_4782643_SNP [dm3] X_4888610_SNP [dm6]	G	C	5.729e^-4	0.988	INTRON CG42594
3R	10855776	3R_10855776_SNP [dm3] 3R_15030054_SNP [dm6]	C	A	5.733e^-4	0.988	INTERGENIC	TF binding site mE1_TFBS_inv
2R	15272771	2R_15272771_SNP [dm3] 2R_19385266_SNP [dm6]	A	T	5.745e^-4	0.988	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2L	11744317	2L_11744317_DEL [dm3] 2L_11744317_DEL [dm6]	TATGT	C	5.747e^-4	0.988	UTR_3_PRIME Vha100-5 DOWNSTREAM Vha100-5 EXON CR44144
3R	15154191	3R_15154191_SNP [dm3] 3R_19328469_SNP [dm6]	T	A	5.751e^-4	0.988	UPSTREAM CR44175 INTERGENIC
2L	1901064	2L_1901064_SNP [dm3] 2L_1901064_SNP [dm6]	G	T	5.753e^-4	0.988	INTRON CG7337
2L	10236676	2L_10236676_SNP [dm3] 2L_10236676_SNP [dm6]	G	A	5.754e^-4	0.988	INTRON mthl15	TF binding site BDTNP1_TFBS_twi
3R	21598090	3R_21598090_SNP [dm3] 3R_25772368_SNP [dm6]	C	T	5.760e^-4	0.988	DOWNSTREAM CG17198 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15307454	3R_15307454_SNP [dm3] 3R_19481732_SNP [dm6]	A	T	5.761e^-4	0.988	INTRON Dys
3L	4973696	3L_4973696_SNP [dm3] 3L_4973696_SNP [dm6]	G	T	5.766e^-4	0.988	INTRON Con
2R	17414336	2R_17414336_DEL [dm3] 2R_21526831_DEL [dm6]	CGGCC	C	5.767e^-4	0.988	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	6837409	3L_6837409_SNP [dm3] 3L_6844309_SNP [dm6]	C	G	5.772e^-4	0.988	INTERGENIC

By genomic position
Variant impact
Gene name

MP phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results