DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.101e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.09746

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2074 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	15137983	3R_15137983_SNP [dm3] 3R_19312261_SNP [dm6]	G	A	5.814e^-7	0.864	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8492891	2L_8492891_SNP [dm3] 2L_8492891_SNP [dm6]	G	A	1.979e^-6	0.864	INTRON Dh31
2R	12148290	2R_12148290_SNP [dm3] 2R_16260785_SNP [dm6]	A	T	2.961e^-6	0.864	UPSTREAM CngA INTERGENIC
X	5078311	X_5078311_INS [dm3] X_5184278_INS [dm6]	C	CC	3.818e^-6	0.864	INTRON rg & 1 other
3R	6930710	3R_6930710_SNP [dm3] 3R_11104988_SNP [dm6]	C	T	4.156e^-6	0.864	INTERGENIC
3L	10146873	3L_10146873_SNP [dm3] 3L_10153773_SNP [dm6]	A	G	4.180e^-6	0.864	DOWNSTREAM CG8072 INTRON dpr10
2R	16659349	2R_16659349_SNP [dm3] 2R_20771844_SNP [dm6]	C	T	5.720e^-6	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10956638	2L_10956638_SNP [dm3] 2L_10956638_SNP [dm6]	A	G	6.807e^-6	0.864	INTRON dpr2
X	2662858	X_2662858_SNP [dm3] X_2768825_SNP [dm6]	G	A	7.739e^-6	0.864	INTRON kirre
2L	8129633	2L_8129633_SNP [dm3] 2L_8129633_SNP [dm6]	C	A	8.011e^-6	0.864	INTRON CG8668
2R	9526622	2R_9526622_SNP [dm3] 2R_13639117_SNP [dm6]	A	C	9.145e^-6	0.864	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10446569	X_10446569_SNP [dm3] X_10552536_SNP [dm6]	G	C	9.826e^-6	0.864	INTRON spri
2R	19535680	2R_19535680_SNP [dm3] 2R_23648157_SNP [dm6]	G	A	9.960e^-6	0.864	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14266904	X_14266904_SNP [dm3] X_14372871_SNP [dm6]	T	G	9.975e^-6	0.864	INTRON dpr8
3R	24476268	3R_24476268_SNP [dm3] 3R_28650546_SNP [dm6]	G	A	1.033e^-5	0.864	UPSTREAM CG31050 INTERGENIC
2R	9526621	2R_9526621_SNP [dm3] 2R_13639116_SNP [dm6]	C	A	1.043e^-5	0.864	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12867573	3L_12867573_SNP [dm3] 3L_12874473_SNP [dm6]	C	A	1.124e^-5	0.864	INTERGENIC
3R	15172277	3R_15172277_SNP [dm3] 3R_19346555_SNP [dm6]	C	A	1.164e^-5	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2757738	2L_2757738_DEL [dm3] 2L_2757738_DEL [dm6]	AT	A	1.247e^-5	0.864	UTR_3_PRIME Bacc DOWNSTREAM CR44772 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	19181465	X_19181465_SNP [dm3] X_19287432_SNP [dm6]	C	T	1.262e^-5	0.864	INTRON CG8034	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13929147	3L_13929147_SNP [dm3] 3L_13936047_SNP [dm6]	T	C	1.487e^-5	0.864	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16993142	X_16993142_DEL [dm3] X_17099109_DEL [dm6]	GATATGCATGG...	G	1.734e^-5	0.864	DOWNSTREAM CG16700 INTRON CG4991
3R	3460573	3R_3460573_SNP [dm3] 3R_7634851_SNP [dm6]	T	A	1.856e^-5	0.864	INTRON CG34127
3L	7157764	3L_7157764_INS [dm3] 3L_7164664_INS [dm6]	A	AAAATGATCAGA...	1.992e^-5	0.864	INTRON Dscam2
2R	16659539	2R_16659539_SNP [dm3] 2R_20772034_SNP [dm6]	C	A	2.007e^-5	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1083500	3L_1083500_DEL [dm3] 3L_1083500_DEL [dm6]	AA	A	2.132e^-5	0.864	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2R	9526623	2R_9526623_INS [dm3] 2R_13639118_INS [dm6]	C	CCCCTGTTTTCC...	2.251e^-5	0.864	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10955682	3R_10955682_SNP [dm3] 3R_15129960_SNP [dm6]	G	T	2.403e^-5	0.864	DOWNSTREAM mir-2493 INTRON CG42788
3L	1352732	3L_1352732_SNP [dm3] 3L_1352732_SNP [dm6]	T	C	2.414e^-5	0.864	UTR_3_PRIME 312 DOWNSTREAM 312 INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
2R	11815557	2R_11815557_SNP [dm3] 2R_15928052_SNP [dm6]	T	G	2.437e^-5	0.864	UTR_5_PRIME bdg INTRON bdg
3R	8241764	3R_8241764_SNP [dm3] 3R_12416042_SNP [dm6]	T	C	2.478e^-5	0.864	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_sens
2L	2718851	2L_2718851_SNP [dm3] 2L_2718851_SNP [dm6]	G	A	2.513e^-5	0.864	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
2L	11198371	2L_11198371_SNP [dm3] 2L_11198371_SNP [dm6]	T	A	2.520e^-5	0.864	INTRON Ca-beta
X	21093150	X_21093150_DEL [dm3] X_21222123_DEL [dm6]	AATTCATATGATTTTTGGGC...	A	2.646e^-5	0.864	INTRON CG32521
2R	16659519	2R_16659519_SNP [dm3] 2R_20772014_SNP [dm6]	C	T	2.711e^-5	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10009183	2R_10009183_SNP [dm3] 2R_14121678_SNP [dm6]	C	G	2.736e^-5	0.864	INTRON Prosap	TF binding site mE1_TFBS_chinmo
2R	4398671	2R_4398671_SNP [dm3] 2R_8511166_SNP [dm6]	T	C	2.765e^-5	0.864	INTRON mtt
2L	2424463	2L_2424463_INS [dm3] 2L_2424463_INS [dm6]	A	AA	2.786e^-5	0.864	UTR_3_PRIME CG9886 UPSTREAM CG44139
3R	13562706	3R_13562706_SNP [dm3] 3R_17736984_SNP [dm6]	T	A	2.808e^-5	0.864	UTR_5_PRIME TyrRII
3L	12867574	3L_12867574_SNP [dm3] 3L_12874474_SNP [dm6]	C	T	2.848e^-5	0.864	INTERGENIC
X	16993155	X_16993155_SNP [dm3] X_17099122_SNP [dm6]	G	A	2.943e^-5	0.864	DOWNSTREAM CG16700 INTRON CG4991
2L	1274643	2L_1274643_SNP [dm3] 2L_1274643_SNP [dm6]	A	T	3.007e^-5	0.864	INTRON robo3
3L	3966356	3L_3966356_SNP [dm3] 3L_3966356_SNP [dm6]	T	C	3.037e^-5	0.864	INTERGENIC
X	10812553	X_10812553_SNP [dm3] X_10918520_SNP [dm6]	G	A	3.054e^-5	0.864	SPLICE_SITE_REGION CG43901 INTRON CG43901	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	10955290	3R_10955290_SNP [dm3] 3R_15129568_SNP [dm6]	C	T	3.059e^-5	0.864	INTRON CG42788
3R	14442770	3R_14442770_SNP [dm3] 3R_18617048_SNP [dm6]	T	C	3.076e^-5	0.864	INTRON qin & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2424473	2L_2424473_SNP [dm3] 2L_2424473_SNP [dm6]	C	T	3.267e^-5	0.864	UTR_3_PRIME CG9886 UPSTREAM CG44139
3L	13646673	3L_13646673_SNP [dm3] 3L_13653573_SNP [dm6]	G	A	3.321e^-5	0.864	INTRON bru-3	TF binding site mE1_TFBS_HSA
X	9589889	X_9589889_SNP [dm3] X_9695856_SNP [dm6]	T	C	3.372e^-5	0.864	SYNONYMOUS_CODING btd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	23207459	3R_23207459_SNP [dm3] 3R_27381737_SNP [dm6]	T	C	3.411e^-5	0.864	UTR_3_PRIME side INTRON side
3R	6930647	3R_6930647_SNP [dm3] 3R_11104925_SNP [dm6]	C	G	3.421e^-5	0.864	INTERGENIC
3R	14523268	3R_14523268_SNP [dm3] 3R_18697546_SNP [dm6]	A	C	3.494e^-5	0.864	INTERGENIC
3R	4810084	3R_4810084_SNP [dm3] 3R_8984362_SNP [dm6]	G	A	3.630e^-5	0.864	UPSTREAM CG11970 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1083512	3L_1083512_SNP [dm3] 3L_1083512_SNP [dm6]	T	C	3.641e^-5	0.864	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	10958177	2L_10958177_SNP [dm3] 2L_10958177_SNP [dm6]	A	G	3.740e^-5	0.864	INTRON dpr2	TF binding site BDTNP1_TFBS_twi
3L	2825393	3L_2825393_SNP [dm3] 3L_2825393_SNP [dm6]	C	T	3.808e^-5	0.864	INTRON CG43444	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11881357	2L_11881357_SNP [dm3] 2L_11881357_SNP [dm6]	C	T	3.842e^-5	0.864	INTRON Pde1c	TF binding site mE1_TFBS_inv
2L	8891499	2L_8891499_SNP [dm3] 2L_8891499_SNP [dm6]	G	C	3.915e^-5	0.864	UTR_5_PRIME CG42713
3L	3837822	3L_3837822_SNP [dm3] 3L_3837822_SNP [dm6]	T	G	4.067e^-5	0.864	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	290190	3L_290190_SNP [dm3] 3L_290190_SNP [dm6]	T	C	4.121e^-5	0.864	SYNONYMOUS_CODING RhoGEF3
2L	14735067	2L_14735067_SNP [dm3] 2L_14735067_SNP [dm6]	T	A	4.204e^-5	0.864	UPSTREAM CG31835 INTERGENIC
2R	9691708	2R_9691708_SNP [dm3] 2R_13804203_SNP [dm6]	A	C	4.216e^-5	0.864	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
3L	2641281	3L_2641281_SNP [dm3] 3L_2641281_SNP [dm6]	T	G	4.236e^-5	0.864	UTR_3_PRIME CG42245 & 1 other DOWNSTREAM CG14949
3L	18914456	3L_18914456_SNP [dm3] 3L_18921356_SNP [dm6]	G	C	4.275e^-5	0.864	SYNONYMOUS_CODING CG3819	TF binding site mE1_TFBS_cad
2R	11815752	2R_11815752_SNP [dm3] 2R_15928247_SNP [dm6]	G	A	4.288e^-5	0.864	UTR_5_PRIME bdg INTRON bdg
X	2662864	X_2662864_SNP [dm3] X_2768831_SNP [dm6]	A	G	4.292e^-5	0.864	INTRON kirre
2R	18279183	2R_18279183_SNP [dm3] 2R_22391678_SNP [dm6]	T	C	4.313e^-5	0.864	SPLICE_SITE_REGION CG13506 INTRON CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13929599	3L_13929599_SNP [dm3] 3L_13936499_SNP [dm6]	C	A	4.345e^-5	0.864	INTERGENIC	TF binding site mE1_TFBS_cad
3R	14523254	3R_14523254_SNP [dm3] 3R_18697532_SNP [dm6]	A	T	4.354e^-5	0.864	INTERGENIC
3L	16553942	3L_16553942_SNP [dm3] 3L_16560842_SNP [dm6]	C	A	4.381e^-5	0.864	INTERGENIC
X	21094842	X_21094842_SNP [dm3] X_21223815_SNP [dm6]	G	C	4.387e^-5	0.864	INTRON CG32521	TF binding site mE1_TFBS_inv
2L	13258775	2L_13258775_DEL [dm3] 2L_13258775_DEL [dm6]	GTATATG	G	4.394e^-5	0.864	DOWNSTREAM CG31730 & 1 other INTERGENIC
2L	8891492	2L_8891492_SNP [dm3] 2L_8891492_SNP [dm6]	G	A	4.397e^-5	0.864	UTR_5_PRIME CG42713
2L	8492926	2L_8492926_SNP [dm3] 2L_8492926_SNP [dm6]	C	G	4.405e^-5	0.864	INTRON Dh31
2L	13082829	2L_13082829_SNP [dm3] 2L_13082829_SNP [dm6]	G	A	4.419e^-5	0.864	INTERGENIC
3L	16452175	3L_16452175_SNP [dm3] 3L_16459075_SNP [dm6]	C	A	4.516e^-5	0.864	INTRON CG33158
3L	1083495	3L_1083495_SNP [dm3] 3L_1083495_SNP [dm6]	T	A	4.532e^-5	0.864	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2R	9689492	2R_9689492_SNP [dm3] 2R_13801987_SNP [dm6]	T	C	4.565e^-5	0.864	INTRON Cpr50Cb
2L	1309777	2L_1309777_SNP [dm3] 2L_1309777_SNP [dm6]	G	A	4.648e^-5	0.864	INTERGENIC
2L	6445478	2L_6445478_SNP [dm3] 2L_6445478_SNP [dm6]	A	G	4.662e^-5	0.864	SYNONYMOUS_CODING CG9527
3R	4823841	3R_4823841_SNP [dm3] 3R_8998119_SNP [dm6]	C	T	4.741e^-5	0.864	SYNONYMOUS_CODING CG11977 INTRON CG31100
3L	3838818	3L_3838818_SNP [dm3] 3L_3838818_SNP [dm6]	C	T	4.756e^-5	0.864	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5376183	3R_5376183_SNP [dm3] 3R_9550461_SNP [dm6]	G	T	4.768e^-5	0.864	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	3409309	3R_3409309_SNP [dm3] 3R_7583587_SNP [dm6]	G	A	4.888e^-5	0.864	INTRON CG34127
3R	14534645	3R_14534645_INS [dm3] 3R_18708923_INS [dm6]	A	AT	4.981e^-5	0.864	INTRON VAChT & 1 other
3L	13929983	3L_13929983_SNP [dm3] 3L_13936883_SNP [dm6]	A	T	5.077e^-5	0.864	INTERGENIC
2L	8620018	2L_8620018_SNP [dm3] 2L_8620018_SNP [dm6]	G	A	5.101e^-5	0.864	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2L	1274641	2L_1274641_SNP [dm3] 2L_1274641_SNP [dm6]	T	A	5.117e^-5	0.864	INTRON robo3
3L	12773772	3L_12773772_SNP [dm3] 3L_12780672_SNP [dm6]	C	A	5.119e^-5	0.864	NON_SYNONYMOUS_CODING CG10969 UPSTREAM CG17666
3L	7024371	3L_7024371_SNP [dm3] 3L_7031271_SNP [dm6]	C	T	5.277e^-5	0.864	INTRON Mp
3L	7157739	3L_7157739_SNP [dm3] 3L_7164639_SNP [dm6]	T	C	5.312e^-5	0.864	INTRON Dscam2
X	7693651	X_7693651_SNP [dm3] X_7799618_SNP [dm6]	G	A	5.319e^-5	0.864	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11967196	2L_11967196_SNP [dm3] 2L_11967196_SNP [dm6]	A	G	5.324e^-5	0.864	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
X	2662880	X_2662880_SNP [dm3] X_2768847_SNP [dm6]	T	A	5.383e^-5	0.864	INTRON kirre
X	2662877	X_2662877_SNP [dm3] X_2768844_SNP [dm6]	A	T	5.400e^-5	0.864	INTRON kirre
2R	17056329	2R_17056329_SNP [dm3] 2R_21168824_SNP [dm6]	A	C	5.499e^-5	0.864	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7161069	3L_7161069_SNP [dm3] 3L_7167969_SNP [dm6]	T	G	5.545e^-5	0.864	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_chinmo
2L	13708932	2L_13708932_SNP [dm3] 2L_13708932_SNP [dm6]	G	T	5.547e^-5	0.864	INTRON CG31814 & 1 other	TF binding site mE1_TFBS_inv
3L	7157744	3L_7157744_INS [dm3] 3L_7164644_INS [dm6]	A	AATTACTGAATGAGA...	5.550e^-5	0.864	INTRON Dscam2
3L	7157748	3L_7157748_SNP [dm3] 3L_7164648_SNP [dm6]	T	A	5.550e^-5	0.864	INTRON Dscam2
3L	7157766	3L_7157766_SNP [dm3] 3L_7164666_SNP [dm6]	G	A	5.550e^-5	0.864	INTRON Dscam2
2L	18394276	2L_18394276_SNP [dm3] 2L_18394276_SNP [dm6]	A	T	5.567e^-5	0.864	DOWNSTREAM Fas3 INTERGENIC
2L	16758440	2L_16758440_SNP [dm3] 2L_16758440_SNP [dm6]	T	G	5.584e^-5	0.864	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
X	7816116	X_7816116_SNP [dm3] X_7922083_SNP [dm6]	G	A	5.595e^-5	0.864	DOWNSTREAM CG10777 & 1 other INTERGENIC
2L	4876855	2L_4876855_SNP [dm3] 2L_4876855_SNP [dm6]	T	A	5.607e^-5	0.864	DOWNSTREAM Cf2 & 1 other INTERGENIC
X	2662875	X_2662875_SNP [dm3] X_2768842_SNP [dm6]	C	T	5.620e^-5	0.864	INTRON kirre
3R	9739838	3R_9739838_SNP [dm3] 3R_13914116_SNP [dm6]	T	A	5.711e^-5	0.864	INTERGENIC
X	13430477	X_13430477_SNP [dm3] X_13536444_SNP [dm6]	A	C	5.716e^-5	0.864	DOWNSTREAM CG15756 INTERGENIC
2R	16730343	2R_16730343_SNP [dm3] 2R_20842838_SNP [dm6]	A	G	5.716e^-5	0.864	INTERGENIC
2R	12177468	2R_12177468_SNP [dm3] 2R_16289963_SNP [dm6]	T	A	5.721e^-5	0.864	SYNONYMOUS_CODING JhI-26 UPSTREAM CG30099 EXON CR43730
3R	9739844	3R_9739844_SNP [dm3] 3R_13914122_SNP [dm6]	T	C	5.813e^-5	0.864	INTERGENIC
X	9589543	X_9589543_SNP [dm3] X_9695510_SNP [dm6]	C	T	5.823e^-5	0.864	INTRON btd	TF binding site BDTNP1_TFBS_dl
2L	14892907	2L_14892907_SNP [dm3] 2L_14892907_SNP [dm6]	G	T	5.852e^-5	0.864	INTERGENIC
3R	16516864	3R_16516864_SNP [dm3] 3R_20691142_SNP [dm6]	T	C	5.915e^-5	0.864	INTRON Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4936358	2L_4936358_SNP [dm3] 2L_4936358_SNP [dm6]	G	A	5.939e^-5	0.864	START_GAINED hoe2 UTR_5_PRIME hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2419105	2L_2419105_SNP [dm3] 2L_2419105_SNP [dm6]	T	C	6.021e^-5	0.864	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11882120	2L_11882120_SNP [dm3] 2L_11882120_SNP [dm6]	G	T	6.107e^-5	0.864	INTRON Pde1c
2R	20151028	2R_20151028_SNP [dm3] 2R_24263505_SNP [dm6]	A	G	6.163e^-5	0.864	INTRON CG3376	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	3175403	2R_3175403_SNP [dm3] 2R_7287898_SNP [dm6]	T	C	6.230e^-5	0.864	INTRON pwn
2L	10935389	2L_10935389_SNP [dm3] 2L_10935389_SNP [dm6]	A	G	6.325e^-5	0.864	INTRON dpr2
3L	9049660	3L_9049660_SNP [dm3] 3L_9056560_SNP [dm6]	T	A	6.331e^-5	0.864	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	12039778	2R_12039778_SNP [dm3] 2R_16152273_SNP [dm6]	A	T	6.482e^-5	0.864	INTRON lbk	transposable element FlyBase
2L	3859806	2L_3859806_SNP [dm3] 2L_3859806_SNP [dm6]	A	G	6.502e^-5	0.864	INTERGENIC
2L	1747308	2L_1747308_SNP [dm3] 2L_1747308_SNP [dm6]	G	T	6.584e^-5	0.864	INTRON CG17646
2L	9404255	2L_9404255_SNP [dm3] 2L_9404255_SNP [dm6]	T	C	6.654e^-5	0.864	INTRON Shawl
3L	3032130	3L_3032130_SNP [dm3] 3L_3032130_SNP [dm6]	C	T	6.732e^-5	0.864	INTERGENIC
3L	1277413	3L_1277413_SNP [dm3] 3L_1277413_SNP [dm6]	G	A	6.735e^-5	0.864	INTRON CG32333
2R	19535317	2R_19535317_SNP [dm3] 2R_23647794_SNP [dm6]	G	A	6.833e^-5	0.864	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	9526618	2R_9526618_SNP [dm3] 2R_13639113_SNP [dm6]	C	T	6.877e^-5	0.864	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8492879	2L_8492879_INS [dm3] 2L_8492879_INS [dm6]	T	TGGT	6.906e^-5	0.864	INTRON Dh31
3R	24476014	3R_24476014_SNP [dm3] 3R_28650292_SNP [dm6]	T	C	6.936e^-5	0.864	NON_SYNONYMOUS_CODING CG31050
2L	11198395	2L_11198395_SNP [dm3] 2L_11198395_SNP [dm6]	C	A	7.000e^-5	0.864	INTRON Ca-beta
3R	21856194	3R_21856194_SNP [dm3] 3R_26030472_SNP [dm6]	T	C	7.062e^-5	0.864	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	13901883	3L_13901883_SNP [dm3] 3L_13908783_SNP [dm6]	A	G	7.080e^-5	0.864	SYNONYMOUS_CODING Rgl	TF binding site mE1_TFBS_sens
2L	11198388	2L_11198388_SNP [dm3] 2L_11198388_SNP [dm6]	C	T	7.111e^-5	0.864	INTRON Ca-beta
3L	3883534	3L_3883534_SNP [dm3] 3L_3883534_SNP [dm6]	A	G	7.133e^-5	0.864	DOWNSTREAM CR43917 INTERGENIC
2R	16622908	2R_16622908_SNP [dm3] 2R_20735403_SNP [dm6]	G	T	7.312e^-5	0.864	INTRON dpr
X	2512088	X_2512088_SNP [dm3] X_2618055_SNP [dm6]	A	T	7.317e^-5	0.864	UTR_3_PRIME Tsp3A DOWNSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2R	17056342	2R_17056342_SNP [dm3] 2R_21168837_SNP [dm6]	A	T	7.336e^-5	0.864	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15822373	2R_15822373_SNP [dm3] 2R_19934868_SNP [dm6]	G	T	7.345e^-5	0.864	EXON CR44627
3R	10955291	3R_10955291_SNP [dm3] 3R_15129569_SNP [dm6]	A	G	7.480e^-5	0.864	INTRON CG42788
3R	22410745	3R_22410745_SNP [dm3] 3R_26585023_SNP [dm6]	A	G	7.489e^-5	0.864	NON_SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5376512	3L_5376512_SNP [dm3] 3L_5383412_SNP [dm6]	C	T	7.516e^-5	0.864	UPSTREAM Ir64a INTERGENIC
3R	23207486	3R_23207486_SNP [dm3] 3R_27381764_SNP [dm6]	C	T	7.543e^-5	0.864	UTR_3_PRIME side INTRON side
X	9589558	X_9589558_DEL [dm3] X_9695525_DEL [dm6]	TA	T	7.556e^-5	0.864	INTRON btd	TF binding site BDTNP1_TFBS_dl
X	14703679	X_14703679_SNP [dm3] X_14809646_SNP [dm6]	T	A	7.560e^-5	0.864	INTRON rut
3L	1083549	3L_1083549_SNP [dm3] 3L_1083549_SNP [dm6]	T	C	7.612e^-5	0.864	INTRON bab1	TF binding site BDTNP1_TFBS_dl
3L	13929248	3L_13929248_SNP [dm3] 3L_13936148_SNP [dm6]	A	G	7.628e^-5	0.864	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16185023	2L_16185023_SNP [dm3] 2L_16185023_SNP [dm6]	C	T	7.648e^-5	0.864	SYNONYMOUS_CODING Ca-alpha1D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6466356	2L_6466356_SNP [dm3] 2L_6466356_SNP [dm6]	T	A	7.694e^-5	0.864	UTR_3_PRIME CG9531 UPSTREAM CG16947 DOWNSTREAM CG9531
2R	15754599	2R_15754599_SNP [dm3] 2R_19867094_SNP [dm6]	A	T	7.732e^-5	0.864	UPSTREAM Obp56i INTRON Obp56i
2R	17059124	2R_17059124_SNP [dm3] 2R_21171619_SNP [dm6]	G	T	7.746e^-5	0.864	UPSTREAM LSm1 INTRON Xpd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	3883537	3L_3883537_SNP [dm3] 3L_3883537_SNP [dm6]	C	T	7.748e^-5	0.864	DOWNSTREAM CR43917 INTERGENIC
3L	11146175	3L_11146175_SNP [dm3] 3L_11153075_SNP [dm6]	A	G	7.756e^-5	0.864	INTRON CG32082
2L	1274652	2L_1274652_SNP [dm3] 2L_1274652_SNP [dm6]	A	T	7.960e^-5	0.864	INTRON robo3
3R	14431218	3R_14431218_SNP [dm3] 3R_18605496_SNP [dm6]	G	A	8.142e^-5	0.864	INTRON qin & 1 other
2L	5493612	2L_5493612_SNP [dm3] 2L_5493612_SNP [dm6]	C	T	8.355e^-5	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	9762005	3R_9762005_SNP [dm3] 3R_13936283_SNP [dm6]	G	A	8.410e^-5	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9739796	3R_9739796_SNP [dm3] 3R_13914074_SNP [dm6]	G	A	8.416e^-5	0.864	INTERGENIC
2L	10656745	2L_10656745_SNP [dm3] 2L_10656745_SNP [dm6]	C	T	8.571e^-5	0.864	UPSTREAM CR45692 INTERGENIC
2L	8129684	2L_8129684_SNP [dm3] 2L_8129684_SNP [dm6]	T	A	8.851e^-5	0.864	INTRON CG8668
3L	1705363	3L_1705363_SNP [dm3] 3L_1705363_SNP [dm6]	G	A	8.854e^-5	0.864	INTRON CG7991
3L	11146311	3L_11146311_SNP [dm3] 3L_11153211_SNP [dm6]	A	C	8.865e^-5	0.864	INTRON CG32082
3R	9742108	3R_9742108_SNP [dm3] 3R_13916386_SNP [dm6]	C	T	8.877e^-5	0.864	INTERGENIC
X	11312994	X_11312994_SNP [dm3] X_11418961_SNP [dm6]	C	A	9.060e^-5	0.864	INTERGENIC
3R	22410746	3R_22410746_SNP [dm3] 3R_26585024_SNP [dm6]	C	T	9.070e^-5	0.864	NON_SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7339080	2L_7339080_SNP [dm3] 2L_7339080_SNP [dm6]	G	A	9.098e^-5	0.864	INTRON Wnt6
2R	9690016	2R_9690016_SNP [dm3] 2R_13802511_SNP [dm6]	A	G	9.105e^-5	0.864	INTRON Cpr50Cb
2R	5940909	2R_5940909_SNP [dm3] 2R_10053404_SNP [dm6]	T	A	9.109e^-5	0.864	UPSTREAM CR44297 & 1 other DOWNSTREAM Def INTRON magu
3R	9710925	3R_9710925_SNP [dm3] 3R_13885203_SNP [dm6]	A	G	9.127e^-5	0.864	INTERGENIC
3R	22091949	3R_22091949_SNP [dm3] 3R_26266227_SNP [dm6]	A	T	9.130e^-5	0.864	INTRON CG6154
X	9710704	X_9710704_SNP [dm3] X_9816671_SNP [dm6]	C	T	9.183e^-5	0.864	INTRON CG32698
2L	10288766	2L_10288766_SNP [dm3] 2L_10288766_SNP [dm6]	A	C	9.190e^-5	0.864	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
3L	14203876	3L_14203876_INS [dm3] 3L_14210776_INS [dm6]	T	TT	9.195e^-5	0.864	INTRON nuf
3L	3835936	3L_3835936_DEL [dm3] 3L_3835936_DEL [dm6]	AA	A	9.256e^-5	0.864	INTRON enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1325398	2L_1325398_SNP [dm3] 2L_1325398_SNP [dm6]	G	C	9.321e^-5	0.864	INTERGENIC
3L	3959679	3L_3959679_SNP [dm3] 3L_3959679_SNP [dm6]	A	T	9.434e^-5	0.864	SYNONYMOUS_CODING CG12605	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5376033	3R_5376033_SNP [dm3] 3R_9550311_SNP [dm6]	A	G	9.545e^-5	0.864	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4438449	2R_4438449_SNP [dm3] 2R_8550944_SNP [dm6]	C	A	9.590e^-5	0.864	DOWNSTREAM CG12780 INTERGENIC
2L	4499503	2L_4499503_SNP [dm3] 2L_4499503_SNP [dm6]	G	A	9.620e^-5	0.864	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	8737302	3L_8737302_INS [dm3] 3L_8744202_INS [dm6]	C	CC	9.637e^-5	0.864	INTRON Prm
2L	9404117	2L_9404117_SNP [dm3] 2L_9404117_SNP [dm6]	A	T	9.734e^-5	0.864	INTRON Shawl
3L	13471635	3L_13471635_SNP [dm3] 3L_13478535_SNP [dm6]	A	C	9.826e^-5	0.864	INTRON stv	TF binding site mE1_TFBS_chinmo
2L	13258558	2L_13258558_SNP [dm3] 2L_13258558_SNP [dm6]	G	T	9.867e^-5	0.864	UTR_3_PRIME CG31851 DOWNSTREAM CG31730 & 1 other
3R	9637998	3R_9637998_SNP [dm3] 3R_13812276_SNP [dm6]	C	A	9.890e^-5	0.864	UPSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	19839121	3L_19839121_SNP [dm3] 3L_19846021_SNP [dm6]	A	T	1.007e^-4	0.864	INTRON Papss	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13658949	2L_13658949_SNP [dm3] 2L_13658949_SNP [dm6]	A	T	1.011e^-4	0.864	INTERGENIC
X	19975976	X_19975976_SNP [dm3] X_20081943_SNP [dm6]	G	A	1.031e^-4	0.864	INTERGENIC
2L	17095853	2L_17095853_SNP [dm3] 2L_17095853_SNP [dm6]	C	G	1.032e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_inv
2L	13299627	2L_13299627_SNP [dm3] 2L_13299627_SNP [dm6]	C	T	1.033e^-4	0.864	SYNONYMOUS_CODING CG31729	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16622889	2R_16622889_SNP [dm3] 2R_20735384_SNP [dm6]	C	T	1.034e^-4	0.864	INTRON dpr
2L	18394384	2L_18394384_SNP [dm3] 2L_18394384_SNP [dm6]	C	A	1.037e^-4	0.864	DOWNSTREAM Fas3 INTERGENIC
2L	18394385	2L_18394385_SNP [dm3] 2L_18394385_SNP [dm6]	T	C	1.037e^-4	0.864	DOWNSTREAM Fas3 INTERGENIC
3L	13916721	3L_13916721_SNP [dm3] 3L_13923621_SNP [dm6]	T	A	1.042e^-4	0.864	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	13624709	2L_13624709_SNP [dm3] 2L_13624709_SNP [dm6]	A	T	1.048e^-4	0.864	INTRON kuz
X	9283746	X_9283746_SNP [dm3] X_9389713_SNP [dm6]	G	A	1.058e^-4	0.864	INTRON mgl
3L	7161087	3L_7161087_SNP [dm3] 3L_7167987_SNP [dm6]	T	C	1.064e^-4	0.864	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_chinmo
2L	1748623	2L_1748623_SNP [dm3] 2L_1748623_SNP [dm6]	G	C	1.069e^-4	0.864	INTRON CG17646
2L	12504432	2L_12504432_SNP [dm3] 2L_12504432_SNP [dm6]	A	G	1.071e^-4	0.864	UTR_5_PRIME bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	16658621	2R_16658621_INS [dm3] 2R_20771116_INS [dm6]	A	AA	1.080e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2419042	2L_2419042_SNP [dm3] 2L_2419042_SNP [dm6]	G	T	1.082e^-4	0.864	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_sens
2L	17060431	2L_17060431_SNP [dm3] 2L_17060431_SNP [dm6]	C	T	1.085e^-4	0.864	INTERGENIC
2L	3616814	2L_3616814_SNP [dm3] 2L_3616814_SNP [dm6]	A	T	1.086e^-4	0.864	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	1277524	3L_1277524_SNP [dm3] 3L_1277524_SNP [dm6]	C	T	1.086e^-4	0.864	INTRON CG32333
3L	7616648	3L_7616648_SNP [dm3] 3L_7623548_SNP [dm6]	C	A	1.090e^-4	0.864	INTRON CG33275	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12682647	2R_12682647_SNP [dm3] 2R_16795142_SNP [dm6]	A	G	1.095e^-4	0.864	INTRON CG15615
3R	13874376	3R_13874376_SNP [dm3] 3R_18048654_SNP [dm6]	G	A	1.096e^-4	0.864	INTRON htl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13257856	2L_13257856_SNP [dm3] 2L_13257856_SNP [dm6]	G	A	1.097e^-4	0.864	SYNONYMOUS_CODING CG31851 DOWNSTREAM CG31728
2R	3422052	2R_3422052_SNP [dm3] 2R_7534547_SNP [dm6]	C	A	1.114e^-4	0.864	UPSTREAM Cyt-b5 INTRON Cyt-b5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	11732127	2L_11732127_SNP [dm3] 2L_11732127_SNP [dm6]	T	C	1.120e^-4	0.864	INTERGENIC
2L	1745855	2L_1745855_SNP [dm3] 2L_1745855_SNP [dm6]	C	T	1.125e^-4	0.864	SYNONYMOUS_CODING CG17646
2R	15076740	2R_15076740_SNP [dm3] 2R_19189235_SNP [dm6]	C	G	1.128e^-4	0.864	INTRON hppy
2R	17056213	2R_17056213_SNP [dm3] 2R_21168708_SNP [dm6]	T	A	1.130e^-4	0.864	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17056228	2R_17056228_SNP [dm3] 2R_21168723_SNP [dm6]	T	A	1.130e^-4	0.864	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17056229	2R_17056229_SNP [dm3] 2R_21168724_SNP [dm6]	G	A	1.130e^-4	0.864	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	17056267	2R_17056267_SNP [dm3] 2R_21168762_SNP [dm6]	A	T	1.130e^-4	0.864	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	13930657	3L_13930657_SNP [dm3] 3L_13937557_SNP [dm6]	C	T	1.136e^-4	0.864	INTERGENIC
3L	2591792	3L_2591792_SNP [dm3] 3L_2591792_SNP [dm6]	G	T	1.139e^-4	0.864	INTRON dos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	7161214	3L_7161214_SNP [dm3] 3L_7168114_SNP [dm6]	C	T	1.142e^-4	0.864	INTRON Dscam2
3R	9558554	3R_9558554_INS [dm3] 3R_13732832_INS [dm6]	C	CACTCGAGTGC...	1.146e^-4	0.864	INTRON CG34383	TF binding site BDTNP1_TFBS_dl
3L	7161229	3L_7161229_SNP [dm3] 3L_7168129_SNP [dm6]	C	T	1.152e^-4	0.864	INTRON Dscam2
2R	17056340	2R_17056340_SNP [dm3] 2R_21168835_SNP [dm6]	A	T	1.156e^-4	0.864	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	10191573	2L_10191573_DEL [dm3] 2L_10191573_DEL [dm6]	AA	T	1.161e^-4	0.864	UPSTREAM CG31874 INTRON Sur
2L	9410676	2L_9410676_SNP [dm3] 2L_9410676_SNP [dm6]	A	T	1.166e^-4	0.864	INTRON Shawl
2R	20271154	2R_20271154_SNP [dm3] 2R_24383631_SNP [dm6]	A	G	1.167e^-4	0.864	INTRON mAChR-A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17490298	X_17490298_SNP [dm3] X_17596265_SNP [dm6]	T	A	1.172e^-4	0.864	INTRON CG12991
2R	19499750	2R_19499750_SNP [dm3] 2R_23612227_SNP [dm6]	A	T	1.173e^-4	0.864	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	18022958	3R_18022958_SNP [dm3] 3R_22197236_SNP [dm6]	A	G	1.177e^-4	0.864	INTRON SKIP & 1 other
3L	13916089	3L_13916089_SNP [dm3] 3L_13922989_SNP [dm6]	C	A	1.180e^-4	0.864	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	823349	3L_823349_SNP [dm3] 3L_823349_SNP [dm6]	T	C	1.186e^-4	0.864	INTERGENIC
2L	10191576	2L_10191576_SNP [dm3] 2L_10191576_SNP [dm6]	T	G	1.192e^-4	0.864	UPSTREAM CG31874 INTRON Sur
3R	21856098	3R_21856098_SNP [dm3] 3R_26030376_SNP [dm6]	G	A	1.196e^-4	0.864	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	3181872	2R_3181872_SNP [dm3] 2R_7294367_SNP [dm6]	G	T	1.201e^-4	0.864	INTRON pwn
2L	3873833	2L_3873833_SNP [dm3] 2L_3873833_SNP [dm6]	G	A	1.204e^-4	0.864	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	16800556	2L_16800556_SNP [dm3] 2L_16800556_SNP [dm6]	T	A	1.205e^-4	0.864	INTRON Ugt36Bc
X	4793948	X_4793948_SNP [dm3] X_4899915_SNP [dm6]	G	A	1.208e^-4	0.864	INTRON CG42594
3R	18022968	3R_18022968_SNP [dm3] 3R_22197246_SNP [dm6]	T	A	1.214e^-4	0.864	INTRON SKIP & 1 other
2L	5604044	2L_5604044_SNP [dm3] 2L_5604044_SNP [dm6]	C	A	1.215e^-4	0.864	INTRON CG14010
2R	16574710	2R_16574710_DEL [dm3] 2R_20687205_DEL [dm6]	ATACAAACACTTAGTATTTG...	CC	1.225e^-4	0.864	UPSTREAM Gr57a INTERGENIC
3R	6930629	3R_6930629_SNP [dm3] 3R_11104907_SNP [dm6]	C	A	1.229e^-4	0.864	INTERGENIC
X	9073331	X_9073331_SNP [dm3] X_9179298_SNP [dm6]	T	G	1.230e^-4	0.864	UTR_3_PRIME mei-P26
2L	9377376	2L_9377376_SNP [dm3] 2L_9377376_SNP [dm6]	T	C	1.231e^-4	0.864	INTRON Shawl
2L	1300650	2L_1300650_SNP [dm3] 2L_1300650_SNP [dm6]	T	C	1.233e^-4	0.864	INTERGENIC
2R	19499763	2R_19499763_SNP [dm3] 2R_23612240_SNP [dm6]	T	C	1.240e^-4	0.864	INTRON CG17664 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	16800564	2L_16800564_SNP [dm3] 2L_16800564_SNP [dm6]	T	A	1.241e^-4	0.864	INTRON Ugt36Bc
3L	11600031	3L_11600031_SNP [dm3] 3L_11606931_SNP [dm6]	G	A	1.263e^-4	0.864	SYNONYMOUS_CODING CG6091
3R	21415008	3R_21415008_SNP [dm3] 3R_25589286_SNP [dm6]	T	A	1.268e^-4	0.864	UPSTREAM mir-1000 INTRON msi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	3837804	3L_3837804_SNP [dm3] 3L_3837804_SNP [dm6]	A	C	1.269e^-4	0.864	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6734362	X_6734362_SNP [dm3] X_6840329_SNP [dm6]	G	T	1.269e^-4	0.864	INTRON CG14435
2L	10118010	2L_10118010_SNP [dm3] 2L_10118010_SNP [dm6]	G	A	1.275e^-4	0.864	SYNONYMOUS_CODING CG34109 INTRON CG44153
3R	13559681	3R_13559681_SNP [dm3] 3R_17733959_SNP [dm6]	C	T	1.282e^-4	0.864	SYNONYMOUS_CODING CG14321 DOWNSTREAM Lgr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	5376062	3R_5376062_SNP [dm3] 3R_9550340_SNP [dm6]	C	A	1.288e^-4	0.864	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8482901	2L_8482901_SNP [dm3] 2L_8482901_SNP [dm6]	C	T	1.291e^-4	0.864	UTR_3_PRIME CG43796 UPSTREAM tRNA:CR31892 INTRON d	TF binding site mE1_TFBS_chinmo
3L	9766385	3L_9766385_SNP [dm3] 3L_9773285_SNP [dm6]	G	C	1.306e^-4	0.864	UPSTREAM CG8177 INTRON CG8177
3L	9962740	3L_9962740_SNP [dm3] 3L_9969640_SNP [dm6]	T	C	1.319e^-4	0.864	INTRON Nc
3L	15681002	3L_15681002_SNP [dm3] 3L_15687902_SNP [dm6]	C	G	1.319e^-4	0.864	UTR_5_PRIME CG34452 UPSTREAM CG34452 DOWNSTREAM CG34451	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	12145243	3L_12145243_SNP [dm3] 3L_12152143_SNP [dm6]	T	G	1.322e^-4	0.864	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2R	11436948	2R_11436948_DEL [dm3] 2R_15549443_DEL [dm6]	AA	A	1.323e^-4	0.864	INTRON CG8192	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	8995102	2L_8995102_SNP [dm3] 2L_8995102_SNP [dm6]	G	T	1.328e^-4	0.864	SYNONYMOUS_CODING CG17906 UTR_3_PRIME alien DOWNSTREAM alien	TF binding site mE1_TFBS_sens
2L	9404127	2L_9404127_SNP [dm3] 2L_9404127_SNP [dm6]	A	T	1.329e^-4	0.864	INTRON Shawl
2R	9526610	2R_9526610_MNP [dm3] 2R_13639105_MNP [dm6]	AAC	CCT	1.330e^-4	0.864	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3063606	2L_3063606_SNP [dm3] 2L_3063606_SNP [dm6]	T	G	1.335e^-4	0.864	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13242580	3L_13242580_SNP [dm3] 3L_13249480_SNP [dm6]	G	T	1.338e^-4	0.864	UPSTREAM tRNA:D2:69F & 1 other INTRON caps
X	16149008	X_16149008_SNP [dm3] X_16254975_SNP [dm6]	A	C	1.348e^-4	0.864	UPSTREAM snRNA:U5:14B DOWNSTREAM snRNA:U2:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1287271	2L_1287271_SNP [dm3] 2L_1287271_SNP [dm6]	T	C	1.350e^-4	0.864	INTRON robo3
3R	22429095	3R_22429095_INS [dm3] 3R_26603373_INS [dm6]	T	TGAATT	1.350e^-4	0.864	UTR_3_PRIME scrib INTRON scrib
2L	1901064	2L_1901064_SNP [dm3] 2L_1901064_SNP [dm6]	G	T	1.352e^-4	0.864	INTRON CG7337
3L	11933255	3L_11933255_SNP [dm3] 3L_11940155_SNP [dm6]	T	A	1.360e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11974442	2L_11974442_SNP [dm3] 2L_11974442_SNP [dm6]	A	T	1.362e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7158336	3L_7158336_SNP [dm3] 3L_7165236_SNP [dm6]	A	T	1.365e^-4	0.864	INTRON Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7158353	3L_7158353_SNP [dm3] 3L_7165253_SNP [dm6]	T	G	1.365e^-4	0.864	INTRON Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7159685	3L_7159685_SNP [dm3] 3L_7166585_SNP [dm6]	C	A	1.365e^-4	0.864	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad
3L	7159848	3L_7159848_SNP [dm3] 3L_7166748_SNP [dm6]	G	A	1.365e^-4	0.864	SYNONYMOUS_CODING Dscam2
2R	11815579	2R_11815579_DEL [dm3] 2R_15928074_DEL [dm6]	ATTGGCAA	A	1.367e^-4	0.864	UTR_5_PRIME bdg INTRON bdg
3R	13442613	3R_13442613_SNP [dm3] 3R_17616891_SNP [dm6]	C	G	1.370e^-4	0.864	UPSTREAM tRNA:V3b:90BC INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	17607770	2R_17607770_SNP [dm3] 2R_21720265_SNP [dm6]	T	G	1.374e^-4	0.864	UPSTREAM LBR & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	16758443	2L_16758443_SNP [dm3] 2L_16758443_SNP [dm6]	C	T	1.377e^-4	0.864	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
2L	16758455	2L_16758455_SNP [dm3] 2L_16758455_SNP [dm6]	C	T	1.377e^-4	0.864	SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
3L	1616545	3L_1616545_SNP [dm3] 3L_1616545_SNP [dm6]	G	A	1.378e^-4	0.864	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170 UPSTREAM CG12105 DOWNSTREAM CG13926
2L	16800573	2L_16800573_SNP [dm3] 2L_16800573_SNP [dm6]	A	T	1.388e^-4	0.864	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
3L	1458625	3L_1458625_SNP [dm3] 3L_1458625_SNP [dm6]	G	A	1.391e^-4	0.864	INTRON Ptp61F	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3817873	3L_3817873_SNP [dm3] 3L_3817873_SNP [dm6]	C	G	1.397e^-4	0.864	SYNONYMOUS_CODING Scsalpha UPSTREAM enc	TF binding site BDTNP1_TFBS_dl
3L	5686199	3L_5686199_SNP [dm3] 3L_5693099_SNP [dm6]	T	G	1.401e^-4	0.864	INTRON sif
3L	2513759	3L_2513759_SNP [dm3] 3L_2513759_SNP [dm6]	T	C	1.403e^-4	0.864	SYNONYMOUS_CODING Spn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	24158998	3L_24158998_SNP [dm3] 3L_24165898_SNP [dm6]	C	T	1.405e^-4	0.864	INTRON Snap25
2L	17043916	2L_17043916_SNP [dm3] 2L_17043916_SNP [dm6]	C	G	1.408e^-4	0.864	UPSTREAM CR43802 INTERGENIC
3R	14713081	3R_14713081_SNP [dm3] 3R_18887359_SNP [dm6]	C	T	1.411e^-4	0.864	INTERGENIC
3L	10005870	3L_10005870_SNP [dm3] 3L_10012770_SNP [dm6]	T	A	1.413e^-4	0.864	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15236549	3L_15236549_SNP [dm3] 3L_15243449_SNP [dm6]	C	T	1.423e^-4	0.864	DOWNSTREAM Tollo INTERGENIC
2R	18052463	2R_18052463_SNP [dm3] 2R_22164958_SNP [dm6]	C	T	1.423e^-4	0.864	SYNONYMOUS_CODING a UPSTREAM CG34206
3R	9552678	3R_9552678_SNP [dm3] 3R_13726956_SNP [dm6]	T	A	1.441e^-4	0.864	INTRON CG34383
2R	15822372	2R_15822372_SNP [dm3] 2R_19934867_SNP [dm6]	G	T	1.441e^-4	0.864	EXON CR44627
3L	12860067	3L_12860067_SNP [dm3] 3L_12866967_SNP [dm6]	A	G	1.448e^-4	0.864	INTERGENIC
X	3429785	X_3429785_SNP [dm3] X_3535752_SNP [dm6]	C	T	1.463e^-4	0.864	INTRON CG32791	TF binding site mE1_TFBS_inv
2R	16618963	2R_16618963_SNP [dm3] 2R_20731458_SNP [dm6]	A	C	1.469e^-4	0.864	UPSTREAM CG13442 INTRON dpr
2R	11885404	2R_11885404_SNP [dm3] 2R_15997899_SNP [dm6]	C	G	1.469e^-4	0.864	SYNONYMOUS_CODING ATPCL	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13441992	3R_13441992_SNP [dm3] 3R_17616270_SNP [dm6]	C	A	1.478e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	12125855	2L_12125855_SNP [dm3] 2L_12125855_SNP [dm6]	G	C	1.480e^-4	0.864	SYNONYMOUS_CODING CG17211
2R	15821278	2R_15821278_SNP [dm3] 2R_19933773_SNP [dm6]	T	A	1.484e^-4	0.864	UPSTREAM CR44627 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	12469953	2R_12469953_SNP [dm3] 2R_16582448_SNP [dm6]	G	A	1.496e^-4	0.864	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11400454	2L_11400454_SNP [dm3] 2L_11400454_SNP [dm6]	G	T	1.496e^-4	0.864	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	21903452	2L_21903452_SNP [dm3] 2L_21903452_SNP [dm6]	C	G	1.505e^-4	0.864	SYNONYMOUS_CODING CG1421
3R	24476045	3R_24476045_SNP [dm3] 3R_28650323_SNP [dm6]	T	A	1.532e^-4	0.864	SYNONYMOUS_CODING CG31050
3R	4820643	3R_4820643_SNP [dm3] 3R_8994921_SNP [dm6]	C	A	1.532e^-4	0.864	UTR_3_PRIME CG11975 DOWNSTREAM CG31100 & 1 other
2L	2007818	2L_2007818_SNP [dm3] 2L_2007818_SNP [dm6]	A	G	1.532e^-4	0.864	UPSTREAM CG15353 & 1 other DOWNSTREAM CR45712 INTERGENIC
X	18252654	X_18252654_SNP [dm3] X_18358621_SNP [dm6]	G	A	1.534e^-4	0.864	UPSTREAM CG6106 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7086055	2L_7086055_SNP [dm3] 2L_7086055_SNP [dm6]	C	T	1.534e^-4	0.864	INTERGENIC
3R	3422067	3R_3422067_SNP [dm3] 3R_7596345_SNP [dm6]	C	G	1.536e^-4	0.864	INTRON CG34127
2R	15821318	2R_15821318_DEL [dm3] 2R_19933813_DEL [dm6]	AA	A	1.544e^-4	0.864	UPSTREAM CR44627 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	9151882	2R_9151882_SNP [dm3] 2R_13264377_SNP [dm6]	T	A	1.549e^-4	0.864	SYNONYMOUS_CODING CG42319 DOWNSTREAM CG42319
2L	6826035	2L_6826035_SNP [dm3] 2L_6826035_SNP [dm6]	T	A	1.553e^-4	0.864	INTRON sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	14703602	X_14703602_SNP [dm3] X_14809569_SNP [dm6]	C	T	1.562e^-4	0.864	INTRON rut
X	21093145	X_21093145_SNP [dm3] X_21222118_SNP [dm6]	T	A	1.572e^-4	0.864	INTRON CG32521
2R	3181835	2R_3181835_SNP [dm3] 2R_7294330_SNP [dm6]	T	C	1.574e^-4	0.864	INTRON pwn
2L	2424590	2L_2424590_SNP [dm3] 2L_2424590_SNP [dm6]	G	A	1.578e^-4	0.864	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	3960324	2L_3960324_SNP [dm3] 2L_3960324_SNP [dm6]	G	T	1.588e^-4	0.864	INTRON fred
3L	4509559	3L_4509559_SNP [dm3] 3L_4509559_SNP [dm6]	G	A	1.592e^-4	0.864	INTERGENIC
X	3155533	X_3155533_SNP [dm3] X_3261500_SNP [dm6]	T	A	1.596e^-4	0.864	INTRON dnc
3R	9708823	3R_9708823_SNP [dm3] 3R_13883101_SNP [dm6]	T	A	1.614e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16548909	3L_16548909_SNP [dm3] 3L_16555809_SNP [dm6]	T	A	1.618e^-4	0.864	INTERGENIC
2R	21085452	2R_21085452_DEL [dm3] 2R_25197929_DEL [dm6]	TC	T	1.620e^-4	0.864	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	2424603	2L_2424603_SNP [dm3] 2L_2424603_SNP [dm6]	G	A	1.647e^-4	0.864	UTR_3_PRIME CG9886 UPSTREAM CG44139
2L	16758361	2L_16758361_SNP [dm3] 2L_16758361_SNP [dm6]	G	A	1.651e^-4	0.864	NON_SYNONYMOUS_CODING ppk17 DOWNSTREAM yellow-b
3L	2772844	3L_2772844_SNP [dm3] 3L_2772844_SNP [dm6]	G	C	1.653e^-4	0.864	NON_SYNONYMOUS_CODING CG12093 UPSTREAM CG9977	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17059107	2R_17059107_SNP [dm3] 2R_21171602_SNP [dm6]	T	C	1.655e^-4	0.864	UPSTREAM LSm1 INTRON Xpd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	17566265	2L_17566265_SNP [dm3] 2L_17566265_SNP [dm6]	G	C	1.655e^-4	0.864	UPSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	7646760	3L_7646760_SNP [dm3] 3L_7653660_SNP [dm6]	C	T	1.656e^-4	0.864	SYNONYMOUS_CODING CG7492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	2771233	3L_2771233_SNP [dm3] 3L_2771233_SNP [dm6]	T	A	1.658e^-4	0.864	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14732462	2L_14732462_SNP [dm3] 2L_14732462_SNP [dm6]	A	C	1.662e^-4	0.864	DOWNSTREAM CR44857 INTERGENIC
2L	3861641	2L_3861641_SNP [dm3] 2L_3861641_SNP [dm6]	T	G	1.670e^-4	0.864	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	13935209	2L_13935209_INS [dm3] 2L_13935209_INS [dm6]	A	AAGT	1.677e^-4	0.864	UPSTREAM CG16885 INTRON Ance-3
3R	1700394	3R_1700394_SNP [dm3] 3R_5874672_SNP [dm6]	C	T	1.681e^-4	0.864	INTRON CG34113
2R	18698182	2R_18698182_SNP [dm3] 2R_22810677_SNP [dm6]	T	A	1.685e^-4	0.864	INTRON stl	TF binding site BDTNP1_TFBS_twi
3L	16193903	3L_16193903_SNP [dm3] 3L_16200803_SNP [dm6]	G	C	1.685e^-4	0.864	SYNONYMOUS_CODING CG33689 UPSTREAM CG33690 DOWNSTREAM CG33688
3L	16037087	3L_16037087_SNP [dm3] 3L_16043987_SNP [dm6]	C	T	1.693e^-4	0.864	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	16037089	3L_16037089_SNP [dm3] 3L_16043989_SNP [dm6]	C	T	1.693e^-4	0.864	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	4962092	2L_4962092_SNP [dm3] 2L_4962092_SNP [dm6]	C	T	1.696e^-4	0.864	SYNONYMOUS_CODING CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4364648	2R_4364648_SNP [dm3] 2R_8477143_SNP [dm6]	A	G	1.705e^-4	0.864	INTRON mtt	transposable element FlyBase
3L	3838290	3L_3838290_SNP [dm3] 3L_3838290_SNP [dm6]	T	C	1.706e^-4	0.864	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14151210	2L_14151210_SNP [dm3] 2L_14151210_SNP [dm6]	G	A	1.706e^-4	0.864	INTRON CG17341
2L	8482768	2L_8482768_SNP [dm3] 2L_8482768_SNP [dm6]	T	C	1.712e^-4	0.864	SYNONYMOUS_CODING CG43796 UPSTREAM tRNA:CR31892 DOWNSTREAM tRNA:CR31896 INTRON d
2R	14114661	2R_14114661_SNP [dm3] 2R_18227156_SNP [dm6]	C	G	1.712e^-4	0.864	DOWNSTREAM CR45311 EXON CR45310
2L	9404124	2L_9404124_SNP [dm3] 2L_9404124_SNP [dm6]	A	T	1.713e^-4	0.864	INTRON Shawl
X	3558355	X_3558355_SNP [dm3] X_3664322_SNP [dm6]	G	A	1.713e^-4	0.864	INTRON AstA-R1
2L	17043922	2L_17043922_SNP [dm3] 2L_17043922_SNP [dm6]	G	A	1.714e^-4	0.864	UPSTREAM CR43802 INTERGENIC
2L	12390280	2L_12390280_SNP [dm3] 2L_12390280_SNP [dm6]	G	A	1.726e^-4	0.864	INTRON bru-2
3R	8383905	3R_8383905_SNP [dm3] 3R_12558183_SNP [dm6]	T	C	1.727e^-4	0.864	INTRON Octbeta2R
2L	13709776	2L_13709776_SNP [dm3] 2L_13709776_SNP [dm6]	C	G	1.727e^-4	0.864	SYNONYMOUS_CODING CG7311 UTR_3_PRIME CG7311 INTRON CG31814	TF binding site mE1_TFBS_HSA
3R	11424849	3R_11424849_DEL [dm3] 3R_15599127_DEL [dm6]	ATCAACATGAAATGAAAAAT...	A	1.731e^-4	0.864	INTERGENIC
3R	27416129	3R_27416129_SNP [dm3] 3R_31590407_SNP [dm6]	A	T	1.731e^-4	0.864	UPSTREAM CG1638 DOWNSTREAM CG1635 EXON CR45190
2L	8482528	2L_8482528_SNP [dm3] 2L_8482528_SNP [dm6]	T	C	1.738e^-4	0.864	SYNONYMOUS_CODING CG43796 UPSTREAM tRNA:CR31892 DOWNSTREAM tRNA:CR31896 INTRON d
2L	13637484	2L_13637484_SNP [dm3] 2L_13637484_SNP [dm6]	C	T	1.746e^-4	0.864	SYNONYMOUS_CODING kuz UTR_3_PRIME kuz DOWNSTREAM kuz
3L	7162372	3L_7162372_SNP [dm3] 3L_7169272_SNP [dm6]	C	T	1.749e^-4	0.864	INTRON Dscam2	TF binding site mE1_TFBS_HSA
2L	1742112	2L_1742112_SNP [dm3] 2L_1742112_SNP [dm6]	T	C	1.749e^-4	0.864	INTRON CG17646	TF binding site mE1_TFBS_chinmo
3L	820250	3L_820250_SNP [dm3] 3L_820250_SNP [dm6]	G	A	1.752e^-4	0.864	UPSTREAM CR43883 INTERGENIC
2L	5075335	2L_5075335_SNP [dm3] 2L_5075335_SNP [dm6]	T	A	1.763e^-4	0.864	INTRON pgant5
3L	10780405	3L_10780405_SNP [dm3] 3L_10787305_SNP [dm6]	T	G	1.772e^-4	0.864	INTERGENIC
2L	13389537	2L_13389537_SNP [dm3] 2L_13389537_SNP [dm6]	C	T	1.776e^-4	0.864	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11528870	2L_11528870_DEL [dm3] 2L_11528870_DEL [dm6]	TTT	T	1.776e^-4	0.864	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
X	7882885	X_7882885_SNP [dm3] X_7988852_SNP [dm6]	T	C	1.786e^-4	0.864	INTERGENIC
X	15696764	X_15696764_SNP [dm3] X_15802731_SNP [dm6]	G	A	1.786e^-4	0.864	UTR_5_PRIME PGRP-LE
3L	2774303	3L_2774303_SNP [dm3] 3L_2774303_SNP [dm6]	C	A	1.786e^-4	0.864	UPSTREAM Atg2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14372505	2L_14372505_SNP [dm3] 2L_14372505_SNP [dm6]	A	T	1.788e^-4	0.864	INTERGENIC
3R	21855653	3R_21855653_SNP [dm3] 3R_26029931_SNP [dm6]	T	C	1.795e^-4	0.864	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4295925	2L_4295925_SNP [dm3] 2L_4295925_SNP [dm6]	C	A	1.797e^-4	0.864	INTRON tutl	TF binding site mE1_TFBS_chinmo
X	22209741	X_22209741_INS [dm3] X_22807905_INS [dm6]	G	GCTCCCGAA	1.802e^-4	0.864	UPSTREAM CR45464 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13442278	3R_13442278_SNP [dm3] 3R_17616556_SNP [dm6]	C	T	1.803e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12535216	2L_12535216_SNP [dm3] 2L_12535216_SNP [dm6]	A	T	1.815e^-4	0.864	INTRON bun
3R	4822941	3R_4822941_SNP [dm3] 3R_8997219_SNP [dm6]	T	A	1.832e^-4	0.864	UPSTREAM CG11977 INTRON CG31100
3L	5487171	3L_5487171_SNP [dm3] 3L_5494071_SNP [dm6]	T	A	1.833e^-4	0.864	EXON CR44520
3R	16239336	3R_16239336_SNP [dm3] 3R_20413614_SNP [dm6]	A	G	1.837e^-4	0.864	INTRON Gfrl
3L	11514340	3L_11514340_SNP [dm3] 3L_11521240_SNP [dm6]	A	C	1.838e^-4	0.864	UTR_3_PRIME CG11714 UPSTREAM Fuca
2R	16843949	2R_16843949_SNP [dm3] 2R_20956444_SNP [dm6]	C	T	1.845e^-4	0.864	INTRON hbn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	4793951	X_4793951_SNP [dm3] X_4899918_SNP [dm6]	G	A	1.856e^-4	0.864	INTRON CG42594
2L	17095281	2L_17095281_SNP [dm3] 2L_17095281_SNP [dm6]	T	G	1.861e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15770953	3R_15770953_SNP [dm3] 3R_19945231_SNP [dm6]	A	G	1.862e^-4	0.864	INTRON Hs6st
3L	7157310	3L_7157310_SNP [dm3] 3L_7164210_SNP [dm6]	T	C	1.863e^-4	0.864	INTRON Dscam2
3L	7158345	3L_7158345_SNP [dm3] 3L_7165245_SNP [dm6]	G	A	1.863e^-4	0.864	INTRON Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7158348	3L_7158348_SNP [dm3] 3L_7165248_SNP [dm6]	C	T	1.863e^-4	0.864	INTRON Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8482702	2L_8482702_SNP [dm3] 2L_8482702_SNP [dm6]	C	T	1.870e^-4	0.864	SYNONYMOUS_CODING CG43796 UPSTREAM tRNA:CR31892 DOWNSTREAM tRNA:CR31896 INTRON d
2L	8482708	2L_8482708_SNP [dm3] 2L_8482708_SNP [dm6]	C	T	1.870e^-4	0.864	SYNONYMOUS_CODING CG43796 UPSTREAM tRNA:CR31892 DOWNSTREAM tRNA:CR31896 INTRON d
3L	15236438	3L_15236438_SNP [dm3] 3L_15243338_SNP [dm6]	A	T	1.872e^-4	0.864	DOWNSTREAM Tollo INTERGENIC
3L	14203755	3L_14203755_SNP [dm3] 3L_14210655_SNP [dm6]	C	A	1.880e^-4	0.864	INTRON nuf
X	8016816	X_8016816_SNP [dm3] X_8122783_SNP [dm6]	T	G	1.880e^-4	0.864	INTRON cyr
2L	10656440	2L_10656440_SNP [dm3] 2L_10656440_SNP [dm6]	C	T	1.884e^-4	0.864	INTERGENIC
2L	14372544	2L_14372544_SNP [dm3] 2L_14372544_SNP [dm6]	T	C	1.893e^-4	0.864	INTERGENIC
3R	9728038	3R_9728038_SNP [dm3] 3R_13902316_SNP [dm6]	T	G	1.894e^-4	0.864	NON_SYNONYMOUS_CODING ems	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12390171	2L_12390171_SNP [dm3] 2L_12390171_SNP [dm6]	T	G	1.895e^-4	0.864	INTRON bru-2
X	18979396	X_18979396_SNP [dm3] X_19085363_SNP [dm6]	A	G	1.908e^-4	0.864	INTERGENIC
2R	11693042	2R_11693042_INS [dm3] 2R_15805537_INS [dm6]	C	CCATAC	1.911e^-4	0.864	INTRON tun & 1 other
2L	676520	2L_676520_SNP [dm3] 2L_676520_SNP [dm6]	C	G	1.913e^-4	0.864	INTRON ds
X	4793963	X_4793963_SNP [dm3] X_4899930_SNP [dm6]	A	G	1.913e^-4	0.864	INTRON CG42594
2L	2256587	2L_2256587_SNP [dm3] 2L_2256587_SNP [dm6]	C	T	1.918e^-4	0.864	INTERGENIC
2L	4936064	2L_4936064_SNP [dm3] 2L_4936064_SNP [dm6]	T	A	1.922e^-4	0.864	INTRON hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3063669	2L_3063669_SNP [dm3] 2L_3063669_SNP [dm6]	T	C	1.923e^-4	0.864	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4309062	X_4309062_SNP [dm3] X_4415029_SNP [dm6]	A	C	1.934e^-4	0.864	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	17732336	2R_17732336_DEL [dm3] 2R_21844831_DEL [dm6]	GTG	G	1.935e^-4	0.864	INTERGENIC
3R	16240224	3R_16240224_DEL [dm3] 3R_20414502_DEL [dm6]	CATTGA	C	1.939e^-4	0.864	INTRON Gfrl
3R	6930497	3R_6930497_SNP [dm3] 3R_11104775_SNP [dm6]	A	T	1.944e^-4	0.864	INTERGENIC
3L	7158388	3L_7158388_SNP [dm3] 3L_7165288_SNP [dm6]	G	A	1.948e^-4	0.864	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	6926659	3R_6926659_SNP [dm3] 3R_11100937_SNP [dm6]	A	C	1.954e^-4	0.864	UPSTREAM CR45579 INTERGENIC
2L	6793565	2L_6793565_SNP [dm3] 2L_6793565_SNP [dm6]	G	A	1.958e^-4	0.864	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	9049651	3L_9049651_SNP [dm3] 3L_9056551_SNP [dm6]	C	G	1.959e^-4	0.864	INTRON Argk	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	19097092	2R_19097092_SNP [dm3] 2R_23209569_SNP [dm6]	A	G	1.964e^-4	0.864	DOWNSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_sens
3R	9761987	3R_9761987_SNP [dm3] 3R_13936265_SNP [dm6]	T	A	1.978e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21588154	3R_21588154_SNP [dm3] 3R_25762432_SNP [dm6]	A	G	1.982e^-4	0.864	UTR_5_PRIME LpR1
3L	9728080	3L_9728080_SNP [dm3] 3L_9734980_SNP [dm6]	T	C	1.983e^-4	0.864	SYNONYMOUS_CODING CG42268 UTR_3_PRIME CG42268
2L	13580905	2L_13580905_SNP [dm3] 2L_13580905_SNP [dm6]	G	T	1.988e^-4	0.864	INTRON kuz
2L	9404177	2L_9404177_DEL [dm3] 2L_9404177_DEL [dm6]	GG	G	1.990e^-4	0.864	INTRON Shawl
X	8122337	X_8122337_DEL [dm3] X_8228304_DEL [dm6]	ATGAAATTA	A	1.998e^-4	0.864	INTRON sdt	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	22193978	X_22193978_SNP [dm3] X_22792142_SNP [dm6]	A	G	2.004e^-4	0.864	INTRON CR44997
2L	11881645	2L_11881645_SNP [dm3] 2L_11881645_SNP [dm6]	T	A	2.009e^-4	0.864	INTRON Pde1c	TF binding site mE1_TFBS_inv
2L	12534190	2L_12534190_SNP [dm3] 2L_12534190_SNP [dm6]	T	G	2.011e^-4	0.864	INTRON bun
2L	2698468	2L_2698468_SNP [dm3] 2L_2698468_SNP [dm6]	T	G	2.011e^-4	0.864	INTRON CG31690
2L	18394402	2L_18394402_SNP [dm3] 2L_18394402_SNP [dm6]	C	A	2.016e^-4	0.864	DOWNSTREAM Fas3 INTERGENIC
2L	3874826	2L_3874826_SNP [dm3] 2L_3874826_SNP [dm6]	G	C	2.016e^-4	0.864	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
2L	15856634	2L_15856634_SNP [dm3] 2L_15856634_SNP [dm6]	C	T	2.027e^-4	0.864	DOWNSTREAM Tektin-A INTERGENIC
3R	24471452	3R_24471452_INS [dm3] 3R_28645730_INS [dm6]	C	CTATGCCTATGCC...	2.042e^-4	0.864	INTERGENIC
3L	18319665	3L_18319665_SNP [dm3] 3L_18326565_SNP [dm6]	T	A	2.046e^-4	0.864	INTERGENIC
3L	7161225	3L_7161225_SNP [dm3] 3L_7168125_SNP [dm6]	T	A	2.049e^-4	0.864	INTRON Dscam2
3L	1083552	3L_1083552_SNP [dm3] 3L_1083552_SNP [dm6]	A	T	2.054e^-4	0.864	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	14734601	2L_14734601_DEL [dm3] 2L_14734601_DEL [dm6]	GA	G	2.060e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5604088	2L_5604088_SNP [dm3] 2L_5604088_SNP [dm6]	C	A	2.065e^-4	0.864	INTRON CG14010
2R	8279379	2R_8279379_SNP [dm3] 2R_12391874_SNP [dm6]	T	A	2.068e^-4	0.864	UPSTREAM Cpr49Ad INTERGENIC
2L	9408826	2L_9408826_SNP [dm3] 2L_9408826_SNP [dm6]	T	A	2.069e^-4	0.864	INTRON Shawl
3R	18772641	3R_18772641_SNP [dm3] 3R_22946919_SNP [dm6]	A	C	2.070e^-4	0.864	INTRON klg	TF binding site BDTNP1_TFBS_prd
2L	17566610	2L_17566610_INS [dm3] 2L_17566610_INS [dm6]	T	TT	2.078e^-4	0.864	DOWNSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18703549	3R_18703549_SNP [dm3] 3R_22877827_SNP [dm6]	A	G	2.080e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17058396	2R_17058396_SNP [dm3] 2R_21170891_SNP [dm6]	A	G	2.087e^-4	0.864	UPSTREAM Xpd & 1 other DOWNSTREAM hng1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16516866	3R_16516866_SNP [dm3] 3R_20691144_SNP [dm6]	A	C	2.095e^-4	0.864	INTRON Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13653968	3R_13653968_SNP [dm3] 3R_17828246_SNP [dm6]	T	G	2.097e^-4	0.864	INTRON tinc	TF binding site mE1_TFBS_cad
2L	1486522	2L_1486522_DEL [dm3] 2L_1486522_DEL [dm6]	AAA	A	2.104e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4599646	3L_4599646_SNP [dm3] 3L_4599646_SNP [dm6]	C	T	2.111e^-4	0.864	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15451881	X_15451881_SNP [dm3] X_15557848_SNP [dm6]	A	G	2.119e^-4	0.864	INTERGENIC
3R	2384136	3R_2384136_SNP [dm3] 3R_6558414_SNP [dm6]	A	C	2.127e^-4	0.864	DOWNSTREAM CG1137 INTRON dpr11
3L	13980020	3L_13980020_SNP [dm3] 3L_13986920_SNP [dm6]	C	T	2.133e^-4	0.864	NON_SYNONYMOUS_CODING CG17362 UPSTREAM CG9040 INTRON CG17364
2L	9863706	2L_9863706_DEL [dm3] 2L_9863706_DEL [dm6]	CTC	C	2.133e^-4	0.864	INTRON nAChRalpha6	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9068080	3L_9068080_SNP [dm3] 3L_9074980_SNP [dm6]	A	G	2.136e^-4	0.864	DOWNSTREAM CG4942 INTRON Tequila	TF binding site mE1_TFBS_cad
3L	4034146	3L_4034146_DEL [dm3] 3L_4034146_DEL [dm6]	TA	T	2.137e^-4	0.864	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
2L	4499539	2L_4499539_SNP [dm3] 2L_4499539_SNP [dm6]	C	A	2.137e^-4	0.864	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8129675	2L_8129675_MNP [dm3] 2L_8129675_MNP [dm6]	AGA	TTT	2.138e^-4	0.864	INTRON CG8668
3R	9726547	3R_9726547_SNP [dm3] 3R_13900825_SNP [dm6]	A	T	2.145e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9407954	2L_9407954_DEL [dm3] 2L_9407954_DEL [dm6]	TAGCTTAAAATTATTTAAAA...	G	2.150e^-4	0.864	INTRON Shawl
2R	19487745	2R_19487745_SNP [dm3] 2R_23600222_SNP [dm6]	T	G	2.154e^-4	0.864	SYNONYMOUS_CODING CG42559 UTR_5_PRIME CG42560 UPSTREAM CG42560 DOWNSTREAM apt & 2 others
3L	10716653	3L_10716653_SNP [dm3] 3L_10723553_SNP [dm6]	A	C	2.156e^-4	0.864	INTERGENIC
2R	10686192	2R_10686192_DEL [dm3] 2R_14798687_DEL [dm6]	TT	T	2.158e^-4	0.864	UTR_5_PRIME kn INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	17750910	3L_17750910_SNP [dm3] 3L_17757810_SNP [dm6]	G	T	2.159e^-4	0.864	UPSTREAM Msi & 1 other INTRON Adgf-A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4675435	3R_4675435_SNP [dm3] 3R_8849713_SNP [dm6]	A	C	2.177e^-4	0.864	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	18782525	3L_18782525_SNP [dm3] 3L_18789425_SNP [dm6]	C	A	2.180e^-4	0.864	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
2R	14133827	2R_14133827_INS [dm3] 2R_18246322_INS [dm6]	A	AA	2.181e^-4	0.864	EXON CR44420	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	14133830	2R_14133830_SNP [dm3] 2R_18246325_SNP [dm6]	C	T	2.181e^-4	0.864	EXON CR44420	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	11312955	X_11312955_SNP [dm3] X_11418922_SNP [dm6]	A	T	2.181e^-4	0.864	INTERGENIC
3L	2983746	3L_2983746_SNP [dm3] 3L_2983746_SNP [dm6]	T	C	2.185e^-4	0.864	DOWNSTREAM CG2107 INTERGENIC
2R	11347214	2R_11347214_SNP [dm3] 2R_15459709_SNP [dm6]	C	G	2.186e^-4	0.864	INTRON CG43729
X	6220412	X_6220412_SNP [dm3] X_6326379_SNP [dm6]	C	T	2.188e^-4	0.864	SYNONYMOUS_CODING CG15894	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8853169	3L_8853169_SNP [dm3] 3L_8860069_SNP [dm6]	C	T	2.189e^-4	0.864	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	9417424	2L_9417424_SNP [dm3] 2L_9417424_SNP [dm6]	A	C	2.195e^-4	0.864	INTRON Mco1
2L	13259567	2L_13259567_SNP [dm3] 2L_13259567_SNP [dm6]	G	T	2.199e^-4	0.864	SYNONYMOUS_CODING CG31730 DOWNSTREAM CG31851
3L	23681570	3L_23681570_SNP [dm3] 3L_23688470_SNP [dm6]	T	G	2.203e^-4	0.864	INTRON AGO3
2L	1307495	2L_1307495_SNP [dm3] 2L_1307495_SNP [dm6]	A	G	2.206e^-4	0.864	INTERGENIC
X	18252639	X_18252639_SNP [dm3] X_18358606_SNP [dm6]	C	T	2.209e^-4	0.864	UPSTREAM CG6106 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10936068	2L_10936068_SNP [dm3] 2L_10936068_SNP [dm6]	G	C	2.212e^-4	0.864	UPSTREAM CG14072 INTRON dpr2
3R	10955669	3R_10955669_SNP [dm3] 3R_15129947_SNP [dm6]	T	C	2.217e^-4	0.864	DOWNSTREAM mir-2493 INTRON CG42788
2L	12542470	2L_12542470_SNP [dm3] 2L_12542470_SNP [dm6]	T	G	2.221e^-4	0.864	UPSTREAM CR42746 INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	11423931	2R_11423931_SNP [dm3] 2R_15536426_SNP [dm6]	C	A	2.222e^-4	0.864	SPLICE_SITE_REGION CG30471 SYNONYMOUS_CODING CG30471
3R	14587677	3R_14587677_SNP [dm3] 3R_18761955_SNP [dm6]	C	T	2.230e^-4	0.864	SYNONYMOUS_CODING CG7720
3L	1588066	3L_1588066_SNP [dm3] 3L_1588066_SNP [dm6]	G	A	2.233e^-4	0.864	INTRON CG13917
2L	9407925	2L_9407925_DEL [dm3] 2L_9407925_DEL [dm6]	TAAGATATCTT...	T	2.234e^-4	0.864	INTRON Shawl
X	21093890	X_21093890_SNP [dm3] X_21222863_SNP [dm6]	A	T	2.240e^-4	0.864	INTRON CG32521	TF binding site mE1_TFBS_chinmo
2L	10943655	2L_10943655_SNP [dm3] 2L_10943655_SNP [dm6]	A	T	2.246e^-4	0.864	UPSTREAM CR44492 & 1 other INTRON dpr2
2L	12541965	2L_12541965_SNP [dm3] 2L_12541965_SNP [dm6]	G	C	2.263e^-4	0.864	INTRON bun
2L	1274943	2L_1274943_SNP [dm3] 2L_1274943_SNP [dm6]	A	T	2.274e^-4	0.864	INTRON robo3	TF binding site mE1_TFBS_chinmo
3L	9462644	3L_9462644_SNP [dm3] 3L_9469544_SNP [dm6]	C	G	2.279e^-4	0.864	INTRON CG44838	TF binding site BDTNP1_TFBS_dl
3L	15671513	3L_15671513_SNP [dm3] 3L_15678413_SNP [dm6]	C	G	2.289e^-4	0.864	INTERGENIC
3R	11111720	3R_11111720_SNP [dm3] 3R_15285998_SNP [dm6]	G	T	2.292e^-4	0.864	UPSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9404811	2L_9404811_SNP [dm3] 2L_9404811_SNP [dm6]	G	T	2.295e^-4	0.864	INTRON Shawl
2L	8995785	2L_8995785_SNP [dm3] 2L_8995785_SNP [dm6]	T	C	2.299e^-4	0.864	DOWNSTREAM CG17906 INTRON alien
2L	16800484	2L_16800484_SNP [dm3] 2L_16800484_SNP [dm6]	A	G	2.307e^-4	0.864	NON_SYNONYMOUS_CODING Ugt36Bc
2L	7398781	2L_7398781_SNP [dm3] 2L_7398781_SNP [dm6]	A	G	2.308e^-4	0.864	UPSTREAM CR44079 & 1 other INTERGENIC
X	9584618	X_9584618_SNP [dm3] X_9690585_SNP [dm6]	C	T	2.332e^-4	0.864	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	17056255	2R_17056255_SNP [dm3] 2R_21168750_SNP [dm6]	T	G	2.336e^-4	0.864	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	6926668	3R_6926668_SNP [dm3] 3R_11100946_SNP [dm6]	A	C	2.348e^-4	0.864	UPSTREAM CR45579 INTERGENIC
X	11312690	X_11312690_SNP [dm3] X_11418657_SNP [dm6]	A	G	2.352e^-4	0.864	INTERGENIC
3L	3030936	3L_3030936_SNP [dm3] 3L_3030936_SNP [dm6]	T	G	2.354e^-4	0.864	INTERGENIC
3L	3030937	3L_3030937_SNP [dm3] 3L_3030937_SNP [dm6]	T	A	2.354e^-4	0.864	INTERGENIC
2R	20185289	2R_20185289_SNP [dm3] 2R_24297766_SNP [dm6]	G	C	2.356e^-4	0.864	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_chinmo
3R	14711123	3R_14711123_SNP [dm3] 3R_18885401_SNP [dm6]	A	G	2.359e^-4	0.864	INTERGENIC
2L	6012384	2L_6012384_SNP [dm3] 2L_6012384_SNP [dm6]	C	A	2.366e^-4	0.864	UPSTREAM CG9098 DOWNSTREAM H2.0 INTERGENIC
X	14702783	X_14702783_SNP [dm3] X_14808750_SNP [dm6]	G	A	2.380e^-4	0.864	INTRON rut
2L	3178302	2L_3178302_SNP [dm3] 2L_3178302_SNP [dm6]	G	A	2.388e^-4	0.864	INTRON CG34393	TF binding site mE1_TFBS_sens
2L	17058165	2L_17058165_SNP [dm3] 2L_17058165_SNP [dm6]	C	T	2.398e^-4	0.864	INTERGENIC
3R	9761954	3R_9761954_SNP [dm3] 3R_13936232_SNP [dm6]	A	G	2.401e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20520918	3R_20520918_SNP [dm3] 3R_24695196_SNP [dm6]	A	G	2.407e^-4	0.864	INTRON slo
3L	12145267	3L_12145267_SNP [dm3] 3L_12152167_SNP [dm6]	T	A	2.418e^-4	0.864	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2L	11881231	2L_11881231_SNP [dm3] 2L_11881231_SNP [dm6]	T	C	2.422e^-4	0.864	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6702493	2L_6702493_SNP [dm3] 2L_6702493_SNP [dm6]	T	C	2.425e^-4	0.864	INTRON Tsp
2R	17058230	2R_17058230_INS [dm3] 2R_21170725_INS [dm6]	A	AA	2.428e^-4	0.864	UPSTREAM Xpd & 1 other DOWNSTREAM hng1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	494797	3L_494797_INS [dm3] 3L_494797_INS [dm6]	A	AA	2.433e^-4	0.864	INTRON klar
2L	6826029	2L_6826029_DEL [dm3] 2L_6826029_DEL [dm6]	GGT	G	2.434e^-4	0.864	INTRON sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18394404	2L_18394404_SNP [dm3] 2L_18394404_SNP [dm6]	C	T	2.436e^-4	0.864	DOWNSTREAM Fas3 INTERGENIC
3R	12709344	3R_12709344_SNP [dm3] 3R_16883622_SNP [dm6]	T	A	2.437e^-4	0.864	INTRON iab-8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
2R	15811628	2R_15811628_SNP [dm3] 2R_19924123_SNP [dm6]	T	A	2.446e^-4	0.864	INTERGENIC	TF binding site mE1_TFBS_cad
3L	3049935	3L_3049935_SNP [dm3] 3L_3049935_SNP [dm6]	A	G	2.447e^-4	0.864	UTR_3_PRIME Sk2 UPSTREAM CG32485	TF binding site mE1_TFBS_cad
3L	15767689	3L_15767689_SNP [dm3] 3L_15774589_SNP [dm6]	A	G	2.459e^-4	0.864	INTERGENIC
2L	9408771	2L_9408771_SNP [dm3] 2L_9408771_SNP [dm6]	T	G	2.462e^-4	0.864	INTRON Shawl
3L	12671321	3L_12671321_SNP [dm3] 3L_12678221_SNP [dm6]	T	C	2.467e^-4	0.864	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2425046	2L_2425046_SNP [dm3] 2L_2425046_SNP [dm6]	C	T	2.487e^-4	0.864	DOWNSTREAM CG9886 & 1 other INTERGENIC
2L	1344726	2L_1344726_SNP [dm3] 2L_1344726_SNP [dm6]	C	T	2.503e^-4	0.864	SYNONYMOUS_CODING Cdlc2 UPSTREAM CG33922 DOWNSTREAM CR45005
2L	9271583	2L_9271583_SNP [dm3] 2L_9271583_SNP [dm6]	T	C	2.510e^-4	0.864	UPSTREAM Ggamma30A INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
3R	22943123	3R_22943123_SNP [dm3] 3R_27117401_SNP [dm6]	A	G	2.512e^-4	0.864	SYNONYMOUS_CODING CG5880 UPSTREAM CG6066	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	2587335	X_2587335_SNP [dm3] X_2693302_SNP [dm6]	G	A	2.516e^-4	0.864	SYNONYMOUS_CODING CG2650 DOWNSTREAM per	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3852278	2L_3852278_SNP [dm3] 2L_3852278_SNP [dm6]	T	C	2.520e^-4	0.864	EXON CR45451	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	7133725	3L_7133725_SNP [dm3] 3L_7140625_SNP [dm6]	C	A	2.521e^-4	0.864	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12390214	2L_12390214_SNP [dm3] 2L_12390214_SNP [dm6]	A	G	2.527e^-4	0.864	INTRON bru-2
3R	4319797	3R_4319797_SNP [dm3] 3R_8494075_SNP [dm6]	G	A	2.533e^-4	0.864	INTERGENIC
2L	1238701	2L_1238701_SNP [dm3] 2L_1238701_SNP [dm6]	G	A	2.535e^-4	0.864	INTERGENIC
3L	2961133	3L_2961133_SNP [dm3] 3L_2961133_SNP [dm6]	A	T	2.540e^-4	0.864	UPSTREAM Or63a & 1 other INTERGENIC
3L	14229649	3L_14229649_SNP [dm3] 3L_14236549_SNP [dm6]	T	C	2.544e^-4	0.864	UPSTREAM CG7906 & 1 other INTERGENIC
3L	23714150	3L_23714150_SNP [dm3] 3L_23721050_SNP [dm6]	A	G	2.546e^-4	0.864	INTERGENIC
2L	1421912	2L_1421912_SNP [dm3] 2L_1421912_SNP [dm6]	G	A	2.550e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18913471	3L_18913471_SNP [dm3] 3L_18920371_SNP [dm6]	A	G	2.553e^-4	0.864	UPSTREAM CG18223 DOWNSTREAM CG3819 INTERGENIC
2L	11744315	2L_11744315_SNP [dm3] 2L_11744315_SNP [dm6]	T	C	2.554e^-4	0.864	UTR_3_PRIME Vha100-5 DOWNSTREAM Vha100-5 EXON CR44144
2L	1901143	2L_1901143_SNP [dm3] 2L_1901143_SNP [dm6]	A	C	2.555e^-4	0.864	INTRON CG7337
3L	2985358	3L_2985358_SNP [dm3] 3L_2985358_SNP [dm6]	C	A	2.559e^-4	0.864	INTERGENIC
2L	8947163	2L_8947163_SNP [dm3] 2L_8947163_SNP [dm6]	T	A	2.559e^-4	0.864	UPSTREAM C1GalTA INTRON C1GalTA
2L	9407815	2L_9407815_SNP [dm3] 2L_9407815_SNP [dm6]	G	A	2.580e^-4	0.864	INTRON Shawl
2L	13580826	2L_13580826_SNP [dm3] 2L_13580826_SNP [dm6]	T	C	2.590e^-4	0.864	INTRON kuz
X	13368121	X_13368121_INS [dm3] X_13474088_INS [dm6]	A	AA	2.598e^-4	0.864	INTRON Neto
2L	5887941	2L_5887941_SNP [dm3] 2L_5887941_SNP [dm6]	T	G	2.601e^-4	0.864	UPSTREAM CR44578 INTRON CR44577
2L	11528876	2L_11528876_SNP [dm3] 2L_11528876_SNP [dm6]	A	G	2.604e^-4	0.864	UPSTREAM CG31705 DOWNSTREAM CG31706 INTERGENIC
2R	12148279	2R_12148279_SNP [dm3] 2R_16260774_SNP [dm6]	A	T	2.605e^-4	0.864	UPSTREAM CngA INTERGENIC
2L	13260187	2L_13260187_SNP [dm3] 2L_13260187_SNP [dm6]	A	C	2.606e^-4	0.864	UPSTREAM CG31730 & 1 other INTERGENIC
3R	11111702	3R_11111702_SNP [dm3] 3R_15285980_SNP [dm6]	C	A	2.607e^-4	0.864	UPSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13441475	3L_13441475_SNP [dm3] 3L_13448375_SNP [dm6]	G	C	2.608e^-4	0.864	NON_SYNONYMOUS_CODING CG10732 DOWNSTREAM CG10133	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9043198	3L_9043198_SNP [dm3] 3L_9050098_SNP [dm6]	A	G	2.621e^-4	0.864	SYNONYMOUS_CODING Argk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	20872286	3L_20872286_INS [dm3] 3L_20879186_INS [dm6]	A	AA	2.625e^-4	0.864	INTRON CG32432
3R	16239290	3R_16239290_SNP [dm3] 3R_20413568_SNP [dm6]	C	T	2.636e^-4	0.864	INTRON Gfrl
X	12344474	X_12344474_SNP [dm3] X_12450441_SNP [dm6]	A	G	2.636e^-4	0.864	INTRON Pkcdelta
2L	11974434	2L_11974434_SNP [dm3] 2L_11974434_SNP [dm6]	T	C	2.659e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9607058	2L_9607058_SNP [dm3] 2L_9607058_SNP [dm6]	A	T	2.663e^-4	0.864	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3L	10146877	3L_10146877_SNP [dm3] 3L_10153777_SNP [dm6]	T	C	2.663e^-4	0.864	DOWNSTREAM CG8072 INTRON dpr10
X	21088877	X_21088877_SNP [dm3] X_21217850_SNP [dm6]	G	C	2.664e^-4	0.864	UPSTREAM CG32523 INTRON CG32521
3L	9870005	3L_9870005_SNP [dm3] 3L_9876905_SNP [dm6]	C	T	2.668e^-4	0.864	DOWNSTREAM CR45406 INTERGENIC
3L	13835327	3L_13835327_SNP [dm3] 3L_13842227_SNP [dm6]	G	A	2.676e^-4	0.864	START_GAINED CG8757 UTR_5_PRIME CG8757 DOWNSTREAM CG8750	TF binding site mE1_TFBS_cad
3L	16512601	3L_16512601_SNP [dm3] 3L_16519501_SNP [dm6]	C	T	2.677e^-4	0.864	INTRON CG43373
2L	9983872	2L_9983872_SNP [dm3] 2L_9983872_SNP [dm6]	C	T	2.677e^-4	0.864	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15078081	3L_15078081_SNP [dm3] 3L_15084981_SNP [dm6]	G	T	2.679e^-4	0.864	INTRON cp309
3L	16417249	3L_16417249_SNP [dm3] 3L_16424149_SNP [dm6]	A	T	2.694e^-4	0.864	INTRON CG33158 & 1 other
3L	13903436	3L_13903436_SNP [dm3] 3L_13910336_SNP [dm6]	C	A	2.698e^-4	0.864	INTRON Rgl
3R	6926647	3R_6926647_DEL [dm3] 3R_11100925_DEL [dm6]	TTAGAAA	G	2.700e^-4	0.864	UPSTREAM CR45579 INTERGENIC
2L	816595	2L_816595_SNP [dm3] 2L_816595_SNP [dm6]	G	C	2.701e^-4	0.864	SYNONYMOUS_CODING Pex12 UPSTREAM Saf6 DOWNSTREAM CG15880	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	816775	2L_816775_SNP [dm3] 2L_816775_SNP [dm6]	C	A	2.701e^-4	0.864	SYNONYMOUS_CODING Pex12 UPSTREAM Saf6 DOWNSTREAM CG15880	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14278119	2L_14278119_SNP [dm3] 2L_14278119_SNP [dm6]	A	C	2.708e^-4	0.864	DOWNSTREAM CG32971 INTRON wb
3R	23166521	3R_23166521_SNP [dm3] 3R_27340799_SNP [dm6]	C	G	2.710e^-4	0.864	NON_SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8737325	3L_8737325_SNP [dm3] 3L_8744225_SNP [dm6]	T	G	2.711e^-4	0.864	INTRON Prm
3L	1854253	3L_1854253_SNP [dm3] 3L_1854253_SNP [dm6]	T	G	2.722e^-4	0.864	INTRON CG13936	insulator Insulator_Class_II.mE01
2L	1933308	2L_1933308_SNP [dm3] 2L_1933308_SNP [dm6]	G	T	2.723e^-4	0.864	INTRON CG7337
2L	6770049	2L_6770049_SNP [dm3] 2L_6770049_SNP [dm6]	T	C	2.727e^-4	0.864	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16922427	2R_16922427_SNP [dm3] 2R_21034922_SNP [dm6]	C	T	2.729e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4309566	3R_4309566_SNP [dm3] 3R_8483844_SNP [dm6]	G	T	2.730e^-4	0.864	INTERGENIC
3L	18119816	3L_18119816_SNP [dm3] 3L_18126716_SNP [dm6]	T	C	2.731e^-4	0.864	INTERGENIC
3L	18119817	3L_18119817_SNP [dm3] 3L_18126717_SNP [dm6]	C	T	2.731e^-4	0.864	INTERGENIC
3R	13559759	3R_13559759_SNP [dm3] 3R_17734037_SNP [dm6]	C	T	2.733e^-4	0.864	SYNONYMOUS_CODING CG14321 DOWNSTREAM Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	4509562	3L_4509562_SNP [dm3] 3L_4509562_SNP [dm6]	T	G	2.733e^-4	0.864	INTERGENIC
3R	11244294	3R_11244294_SNP [dm3] 3R_15418572_SNP [dm6]	C	G	2.736e^-4	0.864	UPSTREAM mir-13a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	18492885	X_18492885_SNP [dm3] X_18598852_SNP [dm6]	C	T	2.744e^-4	0.864	INTERGENIC
2L	19598487	2L_19598487_SNP [dm3] 2L_19598487_SNP [dm6]	T	C	2.758e^-4	0.864	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12360701	2L_12360701_SNP [dm3] 2L_12360701_SNP [dm6]	C	T	2.762e^-4	0.864	INTRON bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2962291	3L_2962291_SNP [dm3] 3L_2962291_SNP [dm6]	C	T	2.764e^-4	0.864	SPLICE_SITE_REGION Or63a SYNONYMOUS_CODING Or63a
2L	3861576	2L_3861576_SNP [dm3] 2L_3861576_SNP [dm6]	C	T	2.766e^-4	0.864	INTRON CR44078	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	3859876	2L_3859876_DEL [dm3] 2L_3859876_DEL [dm6]	TT	T	2.773e^-4	0.864	INTERGENIC
3L	2230414	3L_2230414_SNP [dm3] 3L_2230414_SNP [dm6]	T	C	2.777e^-4	0.864	NON_SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2718854	2L_2718854_SNP [dm3] 2L_2718854_SNP [dm6]	G	A	2.780e^-4	0.864	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
3L	1083528	3L_1083528_SNP [dm3] 3L_1083528_SNP [dm6]	T	C	2.798e^-4	0.864	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	18397358	2L_18397358_SNP [dm3] 2L_18397358_SNP [dm6]	G	A	2.799e^-4	0.864	INTERGENIC
X	6440815	X_6440815_SNP [dm3] X_6546782_SNP [dm6]	G	A	2.807e^-4	0.864	INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	11312693	X_11312693_SNP [dm3] X_11418660_SNP [dm6]	T	A	2.812e^-4	0.864	INTERGENIC
3R	9637905	3R_9637905_SNP [dm3] 3R_13812183_SNP [dm6]	G	A	2.814e^-4	0.864	UPSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	1850522	3L_1850522_SNP [dm3] 3L_1850522_SNP [dm6]	G	A	2.817e^-4	0.864	DOWNSTREAM CG13936 INTERGENIC
3L	13935379	3L_13935379_SNP [dm3] 3L_13942279_SNP [dm6]	A	G	2.822e^-4	0.864	INTRON CG32137	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	6252878	X_6252878_SNP [dm3] X_6358845_SNP [dm6]	G	C	2.825e^-4	0.864	INTRON kdn	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6505075	2L_6505075_SNP [dm3] 2L_6505075_SNP [dm6]	C	T	2.829e^-4	0.864	INTRON CG31637
2L	8885235	2L_8885235_INS [dm3] 2L_8885235_INS [dm6]	T	TT	2.832e^-4	0.864	INTERGENIC
3L	18383537	3L_18383537_SNP [dm3] 3L_18390437_SNP [dm6]	A	G	2.836e^-4	0.864	INTERGENIC
2R	11815615	2R_11815615_SNP [dm3] 2R_15928110_SNP [dm6]	T	A	2.836e^-4	0.864	START_GAINED bdg UTR_5_PRIME bdg INTRON bdg
3L	23079468	3L_23079468_SNP [dm3] 3L_23086368_SNP [dm6]	A	C	2.837e^-4	0.864	INTERGENIC	transposable element FlyBase
2R	8432310	2R_8432310_SNP [dm3] 2R_12544805_SNP [dm6]	G	A	2.842e^-4	0.864	UPSTREAM CG33752 INTRON fra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12340831	2L_12340831_SNP [dm3] 2L_12340831_SNP [dm6]	T	C	2.844e^-4	0.864	INTERGENIC
2L	13389486	2L_13389486_SNP [dm3] 2L_13389486_SNP [dm6]	C	T	2.845e^-4	0.864	SYNONYMOUS_CODING CG7099	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8327634	2L_8327634_SNP [dm3] 2L_8327634_SNP [dm6]	A	G	2.847e^-4	0.864	INTRON CG14275
2R	11423954	2R_11423954_SNP [dm3] 2R_15536449_SNP [dm6]	A	G	2.849e^-4	0.864	INTRON CG30471
2R	15928811	2R_15928811_SNP [dm3] 2R_20041306_SNP [dm6]	C	G	2.851e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	4821080	3L_4821080_SNP [dm3] 3L_4821080_SNP [dm6]	A	T	2.855e^-4	0.864	INTRON Dhc64C
3L	4821094	3L_4821094_SNP [dm3] 3L_4821094_SNP [dm6]	A	T	2.855e^-4	0.864	INTRON Dhc64C
3L	21585986	3L_21585986_SNP [dm3] 3L_21592886_SNP [dm6]	C	T	2.861e^-4	0.864	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3915926	3L_3915926_SNP [dm3] 3L_3915926_SNP [dm6]	C	A	2.866e^-4	0.864	INTRON Eip63F-1
2R	12628984	2R_12628984_SNP [dm3] 2R_16741479_SNP [dm6]	T	A	2.876e^-4	0.864	INTERGENIC
2L	14723220	2L_14723220_SNP [dm3] 2L_14723220_SNP [dm6]	T	A	2.881e^-4	0.864	INTERGENIC
3R	19316846	3R_19316846_SNP [dm3] 3R_23491124_SNP [dm6]	G	A	2.883e^-4	0.864	INTERGENIC
2L	12390177	2L_12390177_INS [dm3] 2L_12390177_INS [dm6]	A	ATGTGTGCGTA...	2.892e^-4	0.864	INTRON bru-2
2R	19535238	2R_19535238_SNP [dm3] 2R_23647715_SNP [dm6]	G	A	2.893e^-4	0.864	SYNONYMOUS_CODING retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	4821047	3L_4821047_SNP [dm3] 3L_4821047_SNP [dm6]	G	T	2.897e^-4	0.864	SPLICE_SITE_REGION Dhc64C INTRON Dhc64C
X	7732395	X_7732395_DEL [dm3] X_7838362_DEL [dm6]	GG	G	2.900e^-4	0.864	INTRON CG1402
2R	18190819	2R_18190819_SNP [dm3] 2R_22303314_SNP [dm6]	T	C	2.902e^-4	0.864	INTRON wdp
3R	12628385	3R_12628385_SNP [dm3] 3R_16802663_SNP [dm6]	T	C	2.918e^-4	0.864	DOWNSTREAM CR45751 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	15967948	3R_15967948_SNP [dm3] 3R_20142226_SNP [dm6]	A	G	2.920e^-4	0.864	INTERGENIC
3L	4034144	3L_4034144_SNP [dm3] 3L_4034144_SNP [dm6]	C	A	2.924e^-4	0.864	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3L	4034149	3L_4034149_DEL [dm3] 3L_4034149_DEL [dm6]	ACG	A	2.924e^-4	0.864	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3L	2772677	3L_2772677_SNP [dm3] 3L_2772677_SNP [dm6]	A	G	2.928e^-4	0.864	SYNONYMOUS_CODING CG12093 UPSTREAM CG9977	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	10449998	2L_10449998_SNP [dm3] 2L_10449998_SNP [dm6]	T	C	2.943e^-4	0.864	UTR_3_PRIME loh DOWNSTREAM ppk10
2R	9326364	2R_9326364_SNP [dm3] 2R_13438859_SNP [dm6]	A	T	2.946e^-4	0.864	UTR_5_PRIME CG42321 DOWNSTREAM tRNA:CR30509 & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16661557	2R_16661557_SNP [dm3] 2R_20774052_SNP [dm6]	T	A	2.948e^-4	0.864	NON_SYNONYMOUS_CODING CG13443	TF binding site mE1_TFBS_chinmo
X	9587340	X_9587340_SNP [dm3] X_9693307_SNP [dm6]	A	T	2.949e^-4	0.864	UPSTREAM CR44016 & 1 other INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10146938	3L_10146938_SNP [dm3] 3L_10153838_SNP [dm6]	G	A	2.952e^-4	0.864	DOWNSTREAM CG8072 INTRON dpr10
3L	7177066	3L_7177066_SNP [dm3] 3L_7183966_SNP [dm6]	T	A	2.954e^-4	0.864	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9505885	X_9505885_SNP [dm3] X_9611852_SNP [dm6]	G	A	2.958e^-4	0.864	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1353095	2R_1353095_SNP [dm3] 2R_5465590_SNP [dm6]	G	A	2.959e^-4	0.864	INTERGENIC	transposable element FlyBase
3R	20115175	3R_20115175_SNP [dm3] 3R_24289453_SNP [dm6]	C	T	2.961e^-4	0.864	SPLICE_SITE_REGION CG34290 SYNONYMOUS_CODING CG34290 UPSTREAM CG6364 DOWNSTREAM CG6356	TF binding site mE1_TFBS_HSA
2L	548846	2L_548846_SNP [dm3] 2L_548846_SNP [dm6]	C	G	2.965e^-4	0.864	INTRON Ets21C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	9772864	3R_9772864_SNP [dm3] 3R_13947142_SNP [dm6]	A	T	2.968e^-4	0.864	INTERGENIC
2R	11346118	2R_11346118_SNP [dm3] 2R_15458613_SNP [dm6]	G	A	2.974e^-4	0.864	INTRON CG43729
X	13503510	X_13503510_SNP [dm3] X_13609477_SNP [dm6]	G	T	2.981e^-4	0.864	UTR_3_PRIME CG11178 DOWNSTREAM Ndc80
2L	18677974	2L_18677974_DEL [dm3] 2L_18677974_DEL [dm6]	AATTGATGTG	A	2.982e^-4	0.864	UPSTREAM Mst36Fa & 1 other INTRON CG31751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11933322	3L_11933322_SNP [dm3] 3L_11940222_SNP [dm6]	C	A	2.988e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3922633	3L_3922633_SNP [dm3] 3L_3922633_SNP [dm6]	C	T	2.990e^-4	0.864	INTRON Eip63F-1
2R	11366981	2R_11366981_DEL [dm3] 2R_15479476_DEL [dm6]	GCG	G	2.992e^-4	0.864	INTRON CG8180	TF binding site mE1_TFBS_HSA
3L	12146255	3L_12146255_SNP [dm3] 3L_12153155_SNP [dm6]	G	T	2.998e^-4	0.864	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_sens
X	9505909	X_9505909_SNP [dm3] X_9611876_SNP [dm6]	C	T	3.000e^-4	0.864	SYNONYMOUS_CODING CG42797	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9916319	3L_9916319_SNP [dm3] 3L_9923219_SNP [dm6]	G	T	3.002e^-4	0.864	INTRON CG34356
2L	14732351	2L_14732351_SNP [dm3] 2L_14732351_SNP [dm6]	A	T	3.004e^-4	0.864	DOWNSTREAM CR44857 INTERGENIC
X	3254712	X_3254712_SNP [dm3] X_3360679_SNP [dm6]	A	C	3.008e^-4	0.864	INTERGENIC
3L	8737341	3L_8737341_SNP [dm3] 3L_8744241_SNP [dm6]	A	T	3.014e^-4	0.864	INTRON Prm
3L	12141399	3L_12141399_DEL [dm3] 3L_12148299_DEL [dm6]	AGTAAAATA	T	3.024e^-4	0.864	UPSTREAM eap INTRON Nrx-IV
3L	4512004	3L_4512004_SNP [dm3] 3L_4512004_SNP [dm6]	T	G	3.025e^-4	0.864	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4595444	2L_4595444_SNP [dm3] 2L_4595444_SNP [dm6]	G	T	3.030e^-4	0.864	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6107937	2L_6107937_SNP [dm3] 2L_6107937_SNP [dm6]	A	C	3.030e^-4	0.864	INTRON stai
X	14703852	X_14703852_INS [dm3] X_14809819_INS [dm6]	A	ATAA	3.030e^-4	0.864	INTRON rut
2L	8129697	2L_8129697_SNP [dm3] 2L_8129697_SNP [dm6]	A	G	3.033e^-4	0.864	INTRON CG8668
2L	4584370	2L_4584370_SNP [dm3] 2L_4584370_SNP [dm6]	T	C	3.034e^-4	0.864	INTRON dp
2L	4499506	2L_4499506_SNP [dm3] 2L_4499506_SNP [dm6]	G	A	3.038e^-4	0.864	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	3994543	3R_3994543_SNP [dm3] 3R_8168821_SNP [dm6]	C	T	3.039e^-4	0.864	INTRON grn
3R	4306798	3R_4306798_SNP [dm3] 3R_8481076_SNP [dm6]	C	G	3.044e^-4	0.864	INTERGENIC
2L	19926794	2L_19926794_INS [dm3] 2L_19926794_INS [dm6]	T	TAAATAAGTAGACT...	3.044e^-4	0.864	INTRON sick
3R	785548	3R_785548_SNP [dm3] 3R_4959826_SNP [dm6]	C	A	3.046e^-4	0.864	INTRON CG2016	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5223965	3L_5223965_SNP [dm3] 3L_5230865_SNP [dm6]	G	A	3.051e^-4	0.864	INTRON shep
3L	20855390	3L_20855390_SNP [dm3] 3L_20862290_SNP [dm6]	G	C	3.051e^-4	0.864	INTRON CG32432
3R	15967940	3R_15967940_SNP [dm3] 3R_20142218_SNP [dm6]	G	A	3.052e^-4	0.864	INTERGENIC
2L	9405412	2L_9405412_SNP [dm3] 2L_9405412_SNP [dm6]	A	T	3.057e^-4	0.864	INTRON Shawl
X	10018304	X_10018304_SNP [dm3] X_10124271_SNP [dm6]	G	T	3.058e^-4	0.864	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
X	16147078	X_16147078_SNP [dm3] X_16253045_SNP [dm6]	T	C	3.077e^-4	0.864	DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2R	17058402	2R_17058402_SNP [dm3] 2R_21170897_SNP [dm6]	A	T	3.079e^-4	0.864	UPSTREAM Xpd & 1 other DOWNSTREAM hng1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	7819883	2R_7819883_SNP [dm3] 2R_11932378_SNP [dm6]	A	C	3.080e^-4	0.864	INTERGENIC
3R	9637894	3R_9637894_SNP [dm3] 3R_13812172_SNP [dm6]	G	T	3.083e^-4	0.864	UPSTREAM tal-AA & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	16893617	3L_16893617_SNP [dm3] 3L_16900517_SNP [dm6]	A	G	3.088e^-4	0.864	SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site BDTNP1_TFBS_dl
3R	17909333	3R_17909333_SNP [dm3] 3R_22083611_SNP [dm6]	G	A	3.092e^-4	0.864	DOWNSTREAM CG13408 INTERGENIC
2R	18533278	2R_18533278_SNP [dm3] 2R_22645773_SNP [dm6]	G	T	3.094e^-4	0.864	DOWNSTREAM CG30195 INTRON CG2852	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16888840	3L_16888840_SNP [dm3] 3L_16895740_SNP [dm6]	T	C	3.095e^-4	0.864	INTRON Lmpt
3L	11933317	3L_11933317_SNP [dm3] 3L_11940217_SNP [dm6]	C	G	3.095e^-4	0.864	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7156415	3L_7156415_SNP [dm3] 3L_7163315_SNP [dm6]	A	G	3.104e^-4	0.864	UTR_3_PRIME Dscam2 INTRON Dscam2
2R	16984629	2R_16984629_SNP [dm3] 2R_21097124_SNP [dm6]	T	A	3.112e^-4	0.864	SYNONYMOUS_CODING CG4038 UPSTREAM CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20520954	3R_20520954_SNP [dm3] 3R_24695232_SNP [dm6]	C	T	3.113e^-4	0.864	INTRON slo
3L	4034174	3L_4034174_SNP [dm3] 3L_4034174_SNP [dm6]	C	T	3.117e^-4	0.864	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d DOWNSTREAM Gr64d EXON CR45042
3L	5234898	3L_5234898_SNP [dm3] 3L_5241798_SNP [dm6]	T	A	3.126e^-4	0.864	INTRON shep
X	2662907	X_2662907_SNP [dm3] X_2768874_SNP [dm6]	C	T	3.127e^-4	0.864	INTRON kirre
3L	7131741	3L_7131741_SNP [dm3] 3L_7138641_SNP [dm6]	C	T	3.128e^-4	0.864	INTRON melt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8240978	3R_8240978_SNP [dm3] 3R_12415256_SNP [dm6]	C	T	3.134e^-4	0.864	SYNONYMOUS_CODING pps	TF binding site mE1_TFBS_sens
3R	14347832	3R_14347832_SNP [dm3] 3R_18522110_SNP [dm6]	T	A	3.139e^-4	0.864	INTRON fru
3L	21189528	3L_21189528_SNP [dm3] 3L_21196428_SNP [dm6]	T	C	3.140e^-4	0.864	UPSTREAM CG34261 DOWNSTREAM CG33054 INTRON park	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12345539	2R_12345539_SNP [dm3] 2R_16458034_SNP [dm6]	A	T	3.153e^-4	0.864	INTERGENIC
3R	26808899	3R_26808899_SNP [dm3] 3R_30983177_SNP [dm6]	C	A	3.164e^-4	0.864	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	8247106	2R_8247106_SNP [dm3] 2R_12359601_SNP [dm6]	T	C	3.173e^-4	0.864	SYNONYMOUS_CODING CG30043 DOWNSTREAM CG30049	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13443201	3R_13443201_DEL [dm3] 3R_17617479_DEL [dm6]	AC	A	3.176e^-4	0.864	UPSTREAM tRNA:V3b:90BC DOWNSTREAM tRNA:P:90Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	11198363	2L_11198363_SNP [dm3] 2L_11198363_SNP [dm6]	C	T	3.177e^-4	0.864	INTRON Ca-beta
2R	11830948	2R_11830948_MNP [dm3] 2R_15943443_MNP [dm6]	AAT	TTA	3.178e^-4	0.864	UPSTREAM CG30093 INTRON Cyp4aa1
3L	14202312	3L_14202312_SNP [dm3] 3L_14209212_SNP [dm6]	C	T	3.178e^-4	0.864	INTRON nuf
2R	9979161	2R_9979161_SNP [dm3] 2R_14091656_SNP [dm6]	C	T	3.184e^-4	0.864	SYNONYMOUS_CODING CG42288 DOWNSTREAM CG42287 INTRON Prosap
2R	16824783	2R_16824783_SNP [dm3] 2R_20937278_SNP [dm6]	A	G	3.185e^-4	0.864	DOWNSTREAM Rx INTERGENIC
3L	4820968	3L_4820968_SNP [dm3] 3L_4820968_SNP [dm6]	T	G	3.187e^-4	0.864	SYNONYMOUS_CODING Dhc64C
2L	12464355	2L_12464355_SNP [dm3] 2L_12464355_SNP [dm6]	T	C	3.188e^-4	0.864	INTRON bun
X	19017780	X_19017780_SNP [dm3] X_19123747_SNP [dm6]	G	A	3.190e^-4	0.864	DOWNSTREAM CG15882 INTERGENIC
3L	3966395	3L_3966395_SNP [dm3] 3L_3966395_SNP [dm6]	C	T	3.190e^-4	0.864	INTERGENIC
3R	24725242	3R_24725242_SNP [dm3] 3R_28899520_SNP [dm6]	G	T	3.191e^-4	0.864	INTRON Doa	TF binding site mE1_TFBS_cad
2R	16984067	2R_16984067_SNP [dm3] 2R_21096562_SNP [dm6]	T	C	3.192e^-4	0.864	SYNONYMOUS_CODING CG4038 INTRON CG34396
2R	20199873	2R_20199873_SNP [dm3] 2R_24312350_SNP [dm6]	A	G	3.203e^-4	0.864	UTR_3_PRIME betaTub60D	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13903416	3L_13903416_SNP [dm3] 3L_13910316_SNP [dm6]	G	A	3.204e^-4	0.864	INTRON Rgl
2R	18801285	2R_18801285_SNP [dm3] 2R_22913762_SNP [dm6]	A	T	3.207e^-4	0.864	SYNONYMOUS_CODING nahoda	TF binding site mE1_TFBS_sens
2L	4331847	2L_4331847_SNP [dm3] 2L_4331847_SNP [dm6]	G	A	3.207e^-4	0.864	DOWNSTREAM CG16857 INTERGENIC	TF binding site mE1_TFBS_Trl
X	18022544	X_18022544_SNP [dm3] X_18128511_SNP [dm6]	A	T	3.208e^-4	0.864	DOWNSTREAM mir-210 INTERGENIC
2L	10938395	2L_10938395_SNP [dm3] 2L_10938395_SNP [dm6]	A	G	3.213e^-4	0.864	DOWNSTREAM CG14072 INTRON dpr2
2L	8886011	2L_8886011_SNP [dm3] 2L_8886011_SNP [dm6]	A	T	3.217e^-4	0.864	DOWNSTREAM CR44415 INTERGENIC
2L	8886012	2L_8886012_SNP [dm3] 2L_8886012_SNP [dm6]	C	T	3.217e^-4	0.864	DOWNSTREAM CR44415 INTERGENIC
2L	10962306	2L_10962306_SNP [dm3] 2L_10962306_SNP [dm6]	A	T	3.217e^-4	0.864	INTRON dpr2
3L	3841344	3L_3841344_SNP [dm3] 3L_3841344_SNP [dm6]	G	T	3.219e^-4	0.864	UTR_3_PRIME enc DOWNSTREAM enc
2R	9581722	2R_9581722_SNP [dm3] 2R_13694217_SNP [dm6]	G	C	3.223e^-4	0.864	UPSTREAM CG6220 INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14968644	3R_14968644_SNP [dm3] 3R_19142922_SNP [dm6]	T	C	3.225e^-4	0.864	INTRON Ppcs
3R	934529	3R_934529_SNP [dm3] 3R_5108807_SNP [dm6]	C	T	3.226e^-4	0.864	NON_SYNONYMOUS_CODING CG43131	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2736508	2L_2736508_SNP [dm3] 2L_2736508_SNP [dm6]	T	A	3.228e^-4	0.864	INTRON CG31689
2L	9404111	2L_9404111_SNP [dm3] 2L_9404111_SNP [dm6]	G	A	3.230e^-4	0.864	INTRON Shawl
3L	13980029	3L_13980029_SNP [dm3] 3L_13986929_SNP [dm6]	T	C	3.230e^-4	0.864	NON_SYNONYMOUS_CODING CG17362 UPSTREAM CG9040 INTRON CG17364
3L	7161243	3L_7161243_SNP [dm3] 3L_7168143_SNP [dm6]	G	A	3.231e^-4	0.864	INTRON Dscam2
2L	9468179	2L_9468179_SNP [dm3] 2L_9468179_SNP [dm6]	A	G	3.238e^-4	0.864	INTERGENIC
2L	10236685	2L_10236685_SNP [dm3] 2L_10236685_SNP [dm6]	C	A	3.242e^-4	0.864	INTRON mthl15	TF binding site BDTNP1_TFBS_twi
2L	10620490	2L_10620490_SNP [dm3] 2L_10620490_SNP [dm6]	C	G	3.242e^-4	0.864	SYNONYMOUS_CODING Trim9
3R	3510373	3R_3510373_SNP [dm3] 3R_7684651_SNP [dm6]	G	A	3.259e^-4	0.866	INTRON Nlg1
X	4793974	X_4793974_SNP [dm3] X_4899941_SNP [dm6]	C	T	3.266e^-4	0.866	INTRON CG42594
3L	13647508	3L_13647508_SNP [dm3] 3L_13654408_SNP [dm6]	G	A	3.267e^-4	0.866	INTRON bru-3
2R	15479810	2R_15479810_SNP [dm3] 2R_19592305_SNP [dm6]	T	G	3.267e^-4	0.866	INTRON sm
3L	8877086	3L_8877086_SNP [dm3] 3L_8883986_SNP [dm6]	A	C	3.271e^-4	0.866	INTRON dally
X	13368090	X_13368090_SNP [dm3] X_13474057_SNP [dm6]	G	A	3.279e^-4	0.867	INTRON Neto
2L	8327637	2L_8327637_SNP [dm3] 2L_8327637_SNP [dm6]	T	A	3.290e^-4	0.869	INTRON CG14275
2R	10005281	2R_10005281_SNP [dm3] 2R_14117776_SNP [dm6]	G	C	3.295e^-4	0.869	INTRON Prosap
X	2605472	X_2605472_SNP [dm3] X_2711439_SNP [dm6]	C	A	3.309e^-4	0.871	SYNONYMOUS_CODING CG2681 DOWNSTREAM CG2685	TF binding site mE1_TFBS_cad
3L	7154835	3L_7154835_SNP [dm3] 3L_7161735_SNP [dm6]	G	A	3.315e^-4	0.871	SYNONYMOUS_CODING Dscam2 UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16574574	2R_16574574_SNP [dm3] 2R_20687069_SNP [dm6]	G	A	3.333e^-4	0.871	UPSTREAM Gr57a INTERGENIC
2L	12027030	2L_12027030_SNP [dm3] 2L_12027030_SNP [dm6]	C	G	3.344e^-4	0.871	UPSTREAM dmGlut INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	5197775	3R_5197775_INS [dm3] 3R_9372053_INS [dm6]	C	CTTTTCCTCTTCC...	3.346e^-4	0.871	CODON_INSERTION FER UPSTREAM FER INTRON FER
2L	8441032	2L_8441032_SNP [dm3] 2L_8441032_SNP [dm6]	C	T	3.347e^-4	0.871	SYNONYMOUS_CODING mus201
2R	17058372	2R_17058372_SNP [dm3] 2R_21170867_SNP [dm6]	A	T	3.352e^-4	0.871	UPSTREAM Xpd & 1 other DOWNSTREAM hng1 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	1582522	3L_1582522_INS [dm3] 3L_1582522_INS [dm6]	T	TATTCTCGATCT...	3.358e^-4	0.871	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	18319678	3L_18319678_SNP [dm3] 3L_18326578_SNP [dm6]	A	C	3.359e^-4	0.871	INTERGENIC
3R	9711019	3R_9711019_SNP [dm3] 3R_13885297_SNP [dm6]	C	G	3.372e^-4	0.871	INTERGENIC
2R	18952813	2R_18952813_SNP [dm3] 2R_23065290_SNP [dm6]	T	C	3.374e^-4	0.871	SYNONYMOUS_CODING PPO3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	2424716	2L_2424716_SNP [dm3] 2L_2424716_SNP [dm6]	A	C	3.377e^-4	0.871	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	8885676	2L_8885676_SNP [dm3] 2L_8885676_SNP [dm6]	C	T	3.377e^-4	0.871	INTERGENIC
2L	13642556	2L_13642556_DEL [dm3] 2L_13642556_DEL [dm6]	AA	A	3.378e^-4	0.871	UTR_5_PRIME ics UPSTREAM CR44726 & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	16758297	2L_16758297_DEL [dm3] 2L_16758297_DEL [dm6]	TC	T	3.388e^-4	0.871	UTR_3_PRIME ppk17 DOWNSTREAM yellow-b
3L	1962404	3L_1962404_SNP [dm3] 3L_1962404_SNP [dm6]	G	A	3.389e^-4	0.871	UPSTREAM SCOT INTRON mv
X	9661764	X_9661764_SNP [dm3] X_9767731_SNP [dm6]	T	C	3.390e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1705340	3L_1705340_SNP [dm3] 3L_1705340_SNP [dm6]	A	C	3.391e^-4	0.871	INTRON CG7991
2R	8438696	2R_8438696_SNP [dm3] 2R_12551191_SNP [dm6]	T	C	3.395e^-4	0.871	INTRON fra
2L	7582818	2L_7582818_SNP [dm3] 2L_7582818_SNP [dm6]	A	G	3.398e^-4	0.871	NON_SYNONYMOUS_CODING Spn28B
3R	22268340	3R_22268340_SNP [dm3] 3R_26442618_SNP [dm6]	G	T	3.408e^-4	0.871	INTRON tx
2L	8129673	2L_8129673_SNP [dm3] 2L_8129673_SNP [dm6]	A	T	3.416e^-4	0.871	INTRON CG8668
3L	2771254	3L_2771254_SNP [dm3] 3L_2771254_SNP [dm6]	A	C	3.417e^-4	0.871	INTRON CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1309586	2L_1309586_SNP [dm3] 2L_1309586_SNP [dm6]	G	C	3.436e^-4	0.871	INTERGENIC
3L	13902749	3L_13902749_SNP [dm3] 3L_13909649_SNP [dm6]	C	T	3.441e^-4	0.871	SYNONYMOUS_CODING Rgl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3791730	3L_3791730_SNP [dm3] 3L_3791730_SNP [dm6]	G	A	3.452e^-4	0.871	DOWNSTREAM CG32266 INTRON CG32264	TF binding site mE1_TFBS_HSA
2R	17058389	2R_17058389_SNP [dm3] 2R_21170884_SNP [dm6]	T	C	3.459e^-4	0.871	UPSTREAM Xpd & 1 other DOWNSTREAM hng1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	4533604	X_4533604_SNP [dm3] X_4639571_SNP [dm6]	T	G	3.472e^-4	0.871	SYNONYMOUS_CODING CG3081 DOWNSTREAM pon	TF binding site mE1_TFBS_chinmo
3R	25909173	3R_25909173_DEL [dm3] 3R_30083451_DEL [dm6]	GAG	G	3.475e^-4	0.871	INTRON sima
3L	5223870	3L_5223870_SNP [dm3] 3L_5230770_SNP [dm6]	T	C	3.478e^-4	0.871	INTRON shep
2L	7743525	2L_7743525_SNP [dm3] 2L_7743525_SNP [dm6]	T	C	3.481e^-4	0.871	DOWNSTREAM CG7214 INTERGENIC
3L	16482947	3L_16482947_SNP [dm3] 3L_16489847_SNP [dm6]	G	A	3.481e^-4	0.871	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	11092231	2L_11092231_SNP [dm3] 2L_11092231_SNP [dm6]	C	T	3.508e^-4	0.871	SYNONYMOUS_CODING CG4705
X	3261617	X_3261617_SNP [dm3] X_3367584_SNP [dm6]	T	C	3.516e^-4	0.871	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2739992	2L_2739992_SNP [dm3] 2L_2739992_SNP [dm6]	T	C	3.517e^-4	0.871	UTR_5_PRIME Hrs UPSTREAM Hrs DOWNSTREAM CG31689	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13971894	3R_13971894_SNP [dm3] 3R_18146172_SNP [dm6]	A	T	3.528e^-4	0.871	INTERGENIC
3L	2772806	3L_2772806_SNP [dm3] 3L_2772806_SNP [dm6]	G	C	3.541e^-4	0.871	SYNONYMOUS_CODING CG12093 UPSTREAM CG9977	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2424787	2L_2424787_DEL [dm3] 2L_2424787_DEL [dm6]	GTGGACTGA	G	3.554e^-4	0.871	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
3R	9772845	3R_9772845_SNP [dm3] 3R_13947123_SNP [dm6]	A	G	3.563e^-4	0.871	INTERGENIC
3L	4509511	3L_4509511_SNP [dm3] 3L_4509511_SNP [dm6]	T	C	3.563e^-4	0.871	INTERGENIC
3L	7159759	3L_7159759_SNP [dm3] 3L_7166659_SNP [dm6]	T	A	3.567e^-4	0.871	SPLICE_SITE_REGION Dscam2 INTRON Dscam2	TF binding site mE1_TFBS_cad
2R	9326420	2R_9326420_SNP [dm3] 2R_13438915_SNP [dm6]	A	G	3.568e^-4	0.871	UTR_5_PRIME CG42321 DOWNSTREAM tRNA:CR30509 & 1 other INTRON CG42321	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	15096611	2L_15096611_SNP [dm3] 2L_15096611_SNP [dm6]	A	T	3.585e^-4	0.871	UTR_3_PRIME CG15270
3L	7474748	3L_7474748_SNP [dm3] 3L_7481648_SNP [dm6]	A	C	3.591e^-4	0.871	INTERGENIC
X	13368091	X_13368091_SNP [dm3] X_13474058_SNP [dm6]	T	A	3.599e^-4	0.871	INTRON Neto
X	12994399	X_12994399_SNP [dm3] X_13100366_SNP [dm6]	T	C	3.599e^-4	0.871	INTRON CG43313
X	6492109	X_6492109_SNP [dm3] X_6598076_SNP [dm6]	A	G	3.602e^-4	0.871	SYNONYMOUS_CODING APC7	TF binding site BDTNP1_TFBS_twi
3R	9773020	3R_9773020_SNP [dm3] 3R_13947298_SNP [dm6]	C	A	3.611e^-4	0.871	INTERGENIC
3R	9773023	3R_9773023_SNP [dm3] 3R_13947301_SNP [dm6]	T	A	3.611e^-4	0.871	INTERGENIC
2R	17876730	2R_17876730_SNP [dm3] 2R_21989225_SNP [dm6]	G	A	3.621e^-4	0.871	SYNONYMOUS_CODING CG34370	TF binding site mE1_TFBS_cad
3L	7161159	3L_7161159_SNP [dm3] 3L_7168059_SNP [dm6]	G	T	3.630e^-4	0.871	INTRON Dscam2	TF binding site mE1_TFBS_chinmo
3R	9746575	3R_9746575_INS [dm3] 3R_13920853_INS [dm6]	A	GACCCTTAAG	3.646e^-4	0.871	INTERGENIC
2L	8620152	2L_8620152_SNP [dm3] 2L_8620152_SNP [dm6]	C	T	3.657e^-4	0.871	DOWNSTREAM tRNA:CR31602 INTRON Sema-1a
2L	6505065	2L_6505065_SNP [dm3] 2L_6505065_SNP [dm6]	T	C	3.665e^-4	0.871	INTRON CG31637
2L	1933340	2L_1933340_SNP [dm3] 2L_1933340_SNP [dm6]	G	A	3.665e^-4	0.871	INTRON CG7337
2L	9404809	2L_9404809_SNP [dm3] 2L_9404809_SNP [dm6]	A	C	3.668e^-4	0.871	INTRON Shawl
2L	9410724	2L_9410724_SNP [dm3] 2L_9410724_SNP [dm6]	T	G	3.668e^-4	0.871	INTRON Shawl
X	9590375	X_9590375_SNP [dm3] X_9696342_SNP [dm6]	G	A	3.673e^-4	0.871	SYNONYMOUS_CODING btd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4630663	3L_4630663_SNP [dm3] 3L_4630663_SNP [dm6]	T	G	3.673e^-4	0.871	INTRON axo
2R	8358894	2R_8358894_SNP [dm3] 2R_12471389_SNP [dm6]	A	T	3.674e^-4	0.871	NON_SYNONYMOUS_CODING CG8545 UPSTREAM CG8550 INTRON dgt5	TF binding site mE1_TFBS_HSA
3L	4820755	3L_4820755_SNP [dm3] 3L_4820755_SNP [dm6]	G	C	3.682e^-4	0.871	SYNONYMOUS_CODING Dhc64C
2L	17106156	2L_17106156_SNP [dm3] 2L_17106156_SNP [dm6]	T	C	3.692e^-4	0.871	DOWNSTREAM CR45448 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20876360	3L_20876360_SNP [dm3] 3L_20883260_SNP [dm6]	A	T	3.692e^-4	0.871	INTRON CG32432
3R	14534556	3R_14534556_SNP [dm3] 3R_18708834_SNP [dm6]	A	G	3.700e^-4	0.871	INTRON VAChT & 1 other
X	2662795	X_2662795_SNP [dm3] X_2768762_SNP [dm6]	T	G	3.703e^-4	0.871	INTRON kirre
3L	23618582	3L_23618582_SNP [dm3] 3L_23625482_SNP [dm6]	T	A	3.707e^-4	0.871	INTRON AGO3	transposable element FlyBase
3L	9108004	3L_9108004_SNP [dm3] 3L_9114904_SNP [dm6]	T	A	3.716e^-4	0.871	INTRON bol
2L	13388770	2L_13388770_SNP [dm3] 2L_13388770_SNP [dm6]	G	A	3.717e^-4	0.871	SYNONYMOUS_CODING CG7099
2L	7672623	2L_7672623_SNP [dm3] 2L_7672623_SNP [dm6]	C	T	3.726e^-4	0.871	INTRON Slob & 1 other
2L	12464233	2L_12464233_SNP [dm3] 2L_12464233_SNP [dm6]	A	T	3.731e^-4	0.871	INTRON bun
2L	2718905	2L_2718905_SNP [dm3] 2L_2718905_SNP [dm6]	C	G	3.737e^-4	0.871	SYNONYMOUS_CODING CG31690	TF binding site mE1_TFBS_chinmo
X	16472661	X_16472661_SNP [dm3] X_16578628_SNP [dm6]	C	A	3.738e^-4	0.871	INTRON CanA-14F
2R	12175403	2R_12175403_SNP [dm3] 2R_16287898_SNP [dm6]	T	C	3.742e^-4	0.871	SYNONYMOUS_CODING CG30324 DOWNSTREAM CG30099 & 1 other	TF binding site mE1_TFBS_cad
3L	9250087	3L_9250087_SNP [dm3] 3L_9256987_SNP [dm6]	T	G	3.743e^-4	0.871	INTRON GluRIB
2R	9691050	2R_9691050_SNP [dm3] 2R_13803545_SNP [dm6]	A	G	3.748e^-4	0.871	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6793559	2L_6793559_SNP [dm3] 2L_6793559_SNP [dm6]	C	T	3.751e^-4	0.871	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6793581	2L_6793581_SNP [dm3] 2L_6793581_SNP [dm6]	A	C	3.751e^-4	0.871	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	14705047	2L_14705047_SNP [dm3] 2L_14705047_SNP [dm6]	G	A	3.753e^-4	0.871	INTERGENIC
X	9590471	X_9590471_SNP [dm3] X_9696438_SNP [dm6]	G	A	3.756e^-4	0.871	SYNONYMOUS_CODING btd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10727561	2L_10727561_SNP [dm3] 2L_10727561_SNP [dm6]	A	C	3.760e^-4	0.871	INTRON CG6431
2R	17056297	2R_17056297_SNP [dm3] 2R_21168792_SNP [dm6]	T	A	3.762e^-4	0.871	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	22213159	X_22213159_SNP [dm3] X_22811323_SNP [dm6]	A	G	3.764e^-4	0.871	SYNONYMOUS_CODING CG12446	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9656998	2L_9656998_SNP [dm3] 2L_9656998_SNP [dm6]	T	C	3.773e^-4	0.871	SYNONYMOUS_CODING CG33299 DOWNSTREAM Apoltp
2R	16461959	2R_16461959_SNP [dm3] 2R_20574454_SNP [dm6]	C	A	3.779e^-4	0.871	INTRON qsm
X	13430267	X_13430267_SNP [dm3] X_13536234_SNP [dm6]	A	T	3.797e^-4	0.871	DOWNSTREAM CG15756 INTERGENIC
3R	16031873	3R_16031873_SNP [dm3] 3R_20206151_SNP [dm6]	G	A	3.802e^-4	0.871	INTRON Nlg4
2L	2424903	2L_2424903_SNP [dm3] 2L_2424903_SNP [dm6]	C	T	3.804e^-4	0.871	SYNONYMOUS_CODING CG44139 DOWNSTREAM CG9886
3R	22449270	3R_22449270_SNP [dm3] 3R_26623548_SNP [dm6]	C	T	3.815e^-4	0.871	UPSTREAM TwdlB INTERGENIC
2L	2424709	2L_2424709_SNP [dm3] 2L_2424709_SNP [dm6]	A	T	3.818e^-4	0.871	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2L	4936350	2L_4936350_SNP [dm3] 2L_4936350_SNP [dm6]	T	G	3.823e^-4	0.871	UTR_5_PRIME hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7126816	2L_7126816_DEL [dm3] 2L_7126816_DEL [dm6]	AAACAAGCCCTGATGAAAAC...	A	3.830e^-4	0.871	INTRON Pvf3
3L	446692	3L_446692_SNP [dm3] 3L_446692_SNP [dm6]	A	G	3.835e^-4	0.871	INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	3181812	2R_3181812_SNP [dm3] 2R_7294307_SNP [dm6]	T	C	3.839e^-4	0.871	INTRON pwn
3L	20048372	3L_20048372_SNP [dm3] 3L_20055272_SNP [dm6]	C	G	3.844e^-4	0.871	INTERGENIC
2L	10449992	2L_10449992_SNP [dm3] 2L_10449992_SNP [dm6]	A	T	3.845e^-4	0.871	UTR_3_PRIME loh DOWNSTREAM ppk10
2R	12039805	2R_12039805_SNP [dm3] 2R_16152300_SNP [dm6]	G	A	3.846e^-4	0.871	INTRON lbk	transposable element FlyBase
3L	12727895	3L_12727895_SNP [dm3] 3L_12734795_SNP [dm6]	T	C	3.851e^-4	0.871	UPSTREAM Ptp69D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9726514	3R_9726514_DEL [dm3] 3R_13900792_DEL [dm6]	GTT	C	3.851e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17534548	2L_17534548_SNP [dm3] 2L_17534548_SNP [dm6]	A	T	3.858e^-4	0.871	INTERGENIC
2L	11400375	2L_11400375_SNP [dm3] 2L_11400375_SNP [dm6]	A	C	3.859e^-4	0.871	INTERGENIC	regulatory region REDfly_CRMs
2L	17567197	2L_17567197_SNP [dm3] 2L_17567197_SNP [dm6]	G	T	3.876e^-4	0.871	DOWNSTREAM mir-124 INTERGENIC
X	9585081	X_9585081_SNP [dm3] X_9691048_SNP [dm6]	T	A	3.878e^-4	0.871	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6793571	2L_6793571_SNP [dm3] 2L_6793571_SNP [dm6]	T	C	3.904e^-4	0.871	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	9934888	2L_9934888_SNP [dm3] 2L_9934888_SNP [dm6]	T	C	3.909e^-4	0.871	UTR_3_PRIME CG31712
3L	11933237	3L_11933237_SNP [dm3] 3L_11940137_SNP [dm6]	T	G	3.919e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12857796	3L_12857796_SNP [dm3] 3L_12864696_SNP [dm6]	A	G	3.920e^-4	0.871	INTERGENIC
X	2939112	X_2939112_SNP [dm3] X_3045079_SNP [dm6]	T	A	3.922e^-4	0.871	INTRON kirre
2L	4498593	2L_4498593_SNP [dm3] 2L_4498593_SNP [dm6]	T	G	3.922e^-4	0.871	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2424776	2L_2424776_SNP [dm3] 2L_2424776_SNP [dm6]	A	G	3.927e^-4	0.871	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2R	19615823	2R_19615823_SNP [dm3] 2R_23728300_SNP [dm6]	G	A	3.927e^-4	0.871	INTRON Sesn	TF binding site mE1_TFBS_chinmo
2R	11831037	2R_11831037_SNP [dm3] 2R_15943532_SNP [dm6]	A	C	3.928e^-4	0.871	UPSTREAM CG30093 INTRON Cyp4aa1
X	18252632	X_18252632_SNP [dm3] X_18358599_SNP [dm6]	A	T	3.928e^-4	0.871	UPSTREAM CG6106 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5223862	3L_5223862_SNP [dm3] 3L_5230762_SNP [dm6]	G	A	3.929e^-4	0.871	INTRON shep
2L	8451044	2L_8451044_DEL [dm3] 2L_8451044_DEL [dm6]	TAATAATT	T	3.933e^-4	0.871	UTR_5_PRIME fu12 INTRON fu12
X	11243918	X_11243918_SNP [dm3] X_11349885_SNP [dm6]	A	C	3.938e^-4	0.871	UPSTREAM CG11752 & 1 other DOWNSTREAM CG1738 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16848875	X_16848875_SNP [dm3] X_16954842_SNP [dm6]	G	A	3.941e^-4	0.871	SYNONYMOUS_CODING RhoGAP15B
3L	12230062	3L_12230062_SNP [dm3] 3L_12236962_SNP [dm6]	T	C	3.952e^-4	0.871	INTRON app
2R	18801201	2R_18801201_SNP [dm3] 2R_22913678_SNP [dm6]	T	G	3.954e^-4	0.871	SYNONYMOUS_CODING nahoda	TF binding site mE1_TFBS_sens
2L	8013414	2L_8013414_SNP [dm3] 2L_8013414_SNP [dm6]	T	C	3.955e^-4	0.871	INTRON Tg
2L	9313931	2L_9313931_SNP [dm3] 2L_9313931_SNP [dm6]	G	A	3.965e^-4	0.871	INTERGENIC
2L	9949069	2L_9949069_SNP [dm3] 2L_9949069_SNP [dm6]	G	A	3.969e^-4	0.871	INTERGENIC
2L	9407829	2L_9407829_SNP [dm3] 2L_9407829_SNP [dm6]	G	A	3.970e^-4	0.871	INTRON Shawl
2L	9404169	2L_9404169_SNP [dm3] 2L_9404169_SNP [dm6]	A	G	3.971e^-4	0.871	INTRON Shawl
3L	1084161	3L_1084161_SNP [dm3] 3L_1084161_SNP [dm6]	C	T	3.976e^-4	0.871	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	8129681	2L_8129681_SNP [dm3] 2L_8129681_SNP [dm6]	A	T	3.980e^-4	0.871	INTRON CG8668
3R	9728221	3R_9728221_SNP [dm3] 3R_13902499_SNP [dm6]	T	C	3.989e^-4	0.871	SYNONYMOUS_CODING ems	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12616606	3L_12616606_SNP [dm3] 3L_12623506_SNP [dm6]	C	A	3.994e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17607451	2R_17607451_SNP [dm3] 2R_21719946_SNP [dm6]	T	G	3.997e^-4	0.871	UTR_5_PRIME Tango11 UPSTREAM LBR & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	14732235	2L_14732235_SNP [dm3] 2L_14732235_SNP [dm6]	G	T	4.002e^-4	0.871	DOWNSTREAM CR44857 INTERGENIC
3L	8317961	3L_8317961_SNP [dm3] 3L_8324861_SNP [dm6]	G	A	4.004e^-4	0.871	UPSTREAM CG34461 INTERGENIC
2L	14372480	2L_14372480_SNP [dm3] 2L_14372480_SNP [dm6]	C	T	4.006e^-4	0.871	INTERGENIC
3L	7161163	3L_7161163_SNP [dm3] 3L_7168063_SNP [dm6]	G	A	4.006e^-4	0.871	INTRON Dscam2	TF binding site mE1_TFBS_chinmo
3R	10966643	3R_10966643_SNP [dm3] 3R_15140921_SNP [dm6]	C	G	4.015e^-4	0.871	SYNONYMOUS_CODING CG3987 UPSTREAM CR45600 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14712798	2L_14712798_SNP [dm3] 2L_14712798_SNP [dm6]	T	A	4.015e^-4	0.871	UPSTREAM CG34165 INTRON CG15282
2L	7801453	2L_7801453_SNP [dm3] 2L_7801453_SNP [dm6]	C	G	4.015e^-4	0.871	NON_SYNONYMOUS_CODING r2d2 DOWNSTREAM cdc14
2L	11974449	2L_11974449_SNP [dm3] 2L_11974449_SNP [dm6]	A	G	4.015e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11811905	2R_11811905_SNP [dm3] 2R_15924400_SNP [dm6]	T	A	4.022e^-4	0.871	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10607925	2L_10607925_SNP [dm3] 2L_10607925_SNP [dm6]	A	C	4.024e^-4	0.871	INTRON Trim9	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4509563	3L_4509563_SNP [dm3] 3L_4509563_SNP [dm6]	T	C	4.043e^-4	0.871	INTERGENIC
2R	16984528	2R_16984528_SNP [dm3] 2R_21097023_SNP [dm6]	G	A	4.043e^-4	0.871	UPSTREAM CG34396 INTRON CG34396 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9404801	2L_9404801_SNP [dm3] 2L_9404801_SNP [dm6]	A	C	4.044e^-4	0.871	INTRON Shawl
X	12733648	X_12733648_SNP [dm3] X_12839615_SNP [dm6]	C	T	4.054e^-4	0.871	INTRON Pde9
2L	14735063	2L_14735063_SNP [dm3] 2L_14735063_SNP [dm6]	A	G	4.055e^-4	0.871	UPSTREAM CG31835 INTERGENIC
3L	18786048	3L_18786048_SNP [dm3] 3L_18792948_SNP [dm6]	A	G	4.070e^-4	0.871	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	6245040	X_6245040_SNP [dm3] X_6351007_SNP [dm6]	G	A	4.077e^-4	0.871	UPSTREAM CG3446 INTRON kdn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	5078279	X_5078279_SNP [dm3] X_5184246_SNP [dm6]	G	A	4.083e^-4	0.871	INTRON rg & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1746014	2L_1746014_SNP [dm3] 2L_1746014_SNP [dm6]	C	T	4.087e^-4	0.871	SYNONYMOUS_CODING CG17646
3L	13129556	3L_13129556_SNP [dm3] 3L_13136456_SNP [dm6]	C	A	4.090e^-4	0.871	SPLICE_SITE_REGION CG33262 INTRON CG33262	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23942912	3L_23942912_SNP [dm3] 3L_23949812_SNP [dm6]	G	C	4.093e^-4	0.871	INTRON CG40470
3L	3813222	3L_3813222_SNP [dm3] 3L_3813222_SNP [dm6]	G	A	4.095e^-4	0.871	SYNONYMOUS_CODING CG12006 UPSTREAM Scsalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	2324300	3L_2324300_SNP [dm3] 3L_2324300_SNP [dm6]	T	C	4.103e^-4	0.871	INTRON MsR1
2L	13251412	2L_13251412_SNP [dm3] 2L_13251412_SNP [dm6]	T	C	4.105e^-4	0.871	UPSTREAM CG31728 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7793677	2L_7793677_SNP [dm3] 2L_7793677_SNP [dm6]	A	G	4.109e^-4	0.871	SYNONYMOUS_CODING LKR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2467579	3R_2467579_SNP [dm3] 3R_6641857_SNP [dm6]	A	G	4.111e^-4	0.871	DOWNSTREAM CG1315 INTRON CG31286	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4351110	2L_4351110_SNP [dm3] 2L_4351110_SNP [dm6]	C	G	4.117e^-4	0.871	EXON CR44700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11436990	2R_11436990_SNP [dm3] 2R_15549485_SNP [dm6]	C	A	4.123e^-4	0.871	INTRON CG8192	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
X	8152075	X_8152075_SNP [dm3] X_8258042_SNP [dm6]	A	T	4.128e^-4	0.871	INTRON CG1632	TF binding site BDTNP1_TFBS_dl
X	9587474	X_9587474_SNP [dm3] X_9693441_SNP [dm6]	T	A	4.133e^-4	0.871	UPSTREAM btd INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9587478	X_9587478_DEL [dm3] X_9693445_DEL [dm6]	TA	T	4.133e^-4	0.871	UPSTREAM btd INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	5070404	X_5070404_INS [dm3] X_5176371_INS [dm6]	C	CGTCATC	4.134e^-4	0.871	UTR_5_PRIME rg INTRON rg
2L	11198356	2L_11198356_SNP [dm3] 2L_11198356_SNP [dm6]	G	A	4.134e^-4	0.871	INTRON Ca-beta
3R	13442120	3R_13442120_SNP [dm3] 3R_17616398_SNP [dm6]	A	C	4.135e^-4	0.871	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
2L	2816946	2L_2816946_SNP [dm3] 2L_2816946_SNP [dm6]	T	C	4.146e^-4	0.871	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9800067	2L_9800067_SNP [dm3] 2L_9800067_SNP [dm6]	A	G	4.156e^-4	0.871	INTRON nAChRalpha6
3L	20046068	3L_20046068_SNP [dm3] 3L_20052968_SNP [dm6]	A	C	4.164e^-4	0.871	INTERGENIC
3L	21193852	3L_21193852_DEL [dm3] 3L_21200752_DEL [dm6]	CGACGTGCCGGGCGAAAGC...	C	4.169e^-4	0.871	UPSTREAM CG33056 INTRON CG33054 & 1 other
2R	17056295	2R_17056295_SNP [dm3] 2R_21168790_SNP [dm6]	A	T	4.170e^-4	0.871	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9552684	3R_9552684_SNP [dm3] 3R_13726962_SNP [dm6]	G	A	4.176e^-4	0.871	INTRON CG34383
3L	8853133	3L_8853133_SNP [dm3] 3L_8860033_SNP [dm6]	C	G	4.184e^-4	0.871	INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	7370363	X_7370363_SNP [dm3] X_7476330_SNP [dm6]	C	G	4.189e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	20413242	X_20413242_SNP [dm3] X_20542215_SNP [dm6]	C	G	4.190e^-4	0.871	INTRON RunxB
2L	18388835	2L_18388835_SNP [dm3] 2L_18388835_SNP [dm6]	G	A	4.198e^-4	0.871	SYNONYMOUS_CODING Fas3 INTRON Fas3
3L	23642576	3L_23642576_SNP [dm3] 3L_23649476_SNP [dm6]	C	T	4.210e^-4	0.871	DOWNSTREAM AGO3 INTRON AGO3
2R	4383202	2R_4383202_SNP [dm3] 2R_8495697_SNP [dm6]	A	C	4.213e^-4	0.871	INTRON mtt
2R	9692243	2R_9692243_SNP [dm3] 2R_13804738_SNP [dm6]	G	A	4.214e^-4	0.871	INTRON Cpr50Cb
3L	22513118	3L_22513118_SNP [dm3] 3L_22520018_SNP [dm6]	G	A	4.214e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2424711	2L_2424711_SNP [dm3] 2L_2424711_SNP [dm6]	A	T	4.216e^-4	0.871	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
2R	4178767	2R_4178767_SNP [dm3] 2R_8291262_SNP [dm6]	A	T	4.216e^-4	0.871	INTERGENIC
3L	2320517	3L_2320517_SNP [dm3] 3L_2320517_SNP [dm6]	T	C	4.220e^-4	0.871	UPSTREAM CR45426 INTERGENIC
X	7063427	X_7063427_SNP [dm3] X_7169394_SNP [dm6]	A	G	4.224e^-4	0.871	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14733257	2L_14733257_SNP [dm3] 2L_14733257_SNP [dm6]	A	C	4.225e^-4	0.871	UPSTREAM CR44857 INTERGENIC
3L	15681057	3L_15681057_SNP [dm3] 3L_15687957_SNP [dm6]	T	C	4.230e^-4	0.871	UPSTREAM CG34452 DOWNSTREAM CG34451 INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13936553	2L_13936553_SNP [dm3] 2L_13936553_SNP [dm6]	G	T	4.237e^-4	0.871	INTRON Ance-3
2L	9404306	2L_9404306_SNP [dm3] 2L_9404306_SNP [dm6]	G	A	4.238e^-4	0.871	INTRON Shawl
2L	7086067	2L_7086067_SNP [dm3] 2L_7086067_SNP [dm6]	G	A	4.262e^-4	0.871	INTERGENIC
2L	7086068	2L_7086068_SNP [dm3] 2L_7086068_SNP [dm6]	C	T	4.262e^-4	0.871	INTERGENIC
3L	1588063	3L_1588063_SNP [dm3] 3L_1588063_SNP [dm6]	A	G	4.265e^-4	0.871	INTRON CG13917
X	8202670	X_8202670_SNP [dm3] X_8308637_SNP [dm6]	A	G	4.276e^-4	0.871	INTRON nAChRalpha3
2L	2867069	2L_2867069_SNP [dm3] 2L_2867069_SNP [dm6]	C	T	4.277e^-4	0.871	SYNONYMOUS_CODING CG2991
3R	12596049	3R_12596049_SNP [dm3] 3R_16770327_SNP [dm6]	A	T	4.279e^-4	0.871	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12419457	2L_12419457_SNP [dm3] 2L_12419457_SNP [dm6]	T	G	4.281e^-4	0.871	INTRON vir-1
3R	24725220	3R_24725220_SNP [dm3] 3R_28899498_SNP [dm6]	C	T	4.285e^-4	0.871	INTRON Doa	TF binding site mE1_TFBS_cad
3L	821127	3L_821127_SNP [dm3] 3L_821127_SNP [dm6]	G	A	4.287e^-4	0.871	EXON CR43883	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16984520	2R_16984520_SNP [dm3] 2R_21097015_SNP [dm6]	A	G	4.288e^-4	0.871	UPSTREAM CG34396 INTRON CG34396 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2983745	3L_2983745_SNP [dm3] 3L_2983745_SNP [dm6]	T	C	4.290e^-4	0.871	DOWNSTREAM CG2107 INTERGENIC
3R	23507401	3R_23507401_SNP [dm3] 3R_27681679_SNP [dm6]	A	G	4.292e^-4	0.871	SYNONYMOUS_CODING Sce	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4793808	X_4793808_SNP [dm3] X_4899775_SNP [dm6]	T	C	4.296e^-4	0.871	INTRON CG42594
2L	19837808	2L_19837808_SNP [dm3] 2L_19837808_SNP [dm6]	G	A	4.296e^-4	0.871	INTRON sick
3L	4820803	3L_4820803_SNP [dm3] 3L_4820803_SNP [dm6]	G	C	4.297e^-4	0.871	SYNONYMOUS_CODING Dhc64C
3R	19901147	3R_19901147_SNP [dm3] 3R_24075425_SNP [dm6]	G	A	4.301e^-4	0.871	INTRON 4EHP
X	4902010	X_4902010_SNP [dm3] X_5007977_SNP [dm6]	C	A	4.302e^-4	0.871	INTRON CR44833
3L	4034177	3L_4034177_SNP [dm3] 3L_4034177_SNP [dm6]	G	A	4.307e^-4	0.871	SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d DOWNSTREAM Gr64d EXON CR45042
2R	2622944	2R_2622944_SNP [dm3] 2R_6735439_SNP [dm6]	T	A	4.311e^-4	0.871	INTRON l_2_01289
3L	9050024	3L_9050024_SNP [dm3] 3L_9056924_SNP [dm6]	A	T	4.318e^-4	0.871	INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	7213785	2L_7213785_SNP [dm3] 2L_7213785_SNP [dm6]	A	G	4.323e^-4	0.871	INTRON CG13784	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7062871	X_7062871_SNP [dm3] X_7168838_SNP [dm6]	T	C	4.327e^-4	0.871	INTRON CG9650 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7154706	3L_7154706_SNP [dm3] 3L_7161606_SNP [dm6]	G	A	4.334e^-4	0.871	SYNONYMOUS_CODING Dscam2 UTR_3_PRIME Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13931513	2L_13931513_SNP [dm3] 2L_13931513_SNP [dm6]	C	T	4.344e^-4	0.871	UPSTREAM CG42711 INTRON Ance-3
3R	16239305	3R_16239305_SNP [dm3] 3R_20413583_SNP [dm6]	T	A	4.346e^-4	0.871	INTRON Gfrl
2R	9490525	2R_9490525_SNP [dm3] 2R_13603020_SNP [dm6]	T	A	4.351e^-4	0.871	INTERGENIC
3L	2591249	3L_2591249_SNP [dm3] 3L_2591249_SNP [dm6]	T	C	4.357e^-4	0.871	UTR_5_PRIME dos INTRON dos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
3L	7206979	3L_7206979_SNP [dm3] 3L_7213879_SNP [dm6]	A	C	4.362e^-4	0.871	INTERGENIC
2L	12101002	2L_12101002_SNP [dm3] 2L_12101002_SNP [dm6]	A	T	4.365e^-4	0.871	UTR_3_PRIME Patsas DOWNSTREAM Ced-12
2R	13603019	2R_13603019_SNP [dm3] 2R_17715514_SNP [dm6]	G	C	4.390e^-4	0.871	INTRON CG6424	TF binding site BDTNP1_TFBS_dl
3L	23717402	3L_23717402_SNP [dm3] 3L_23724302_SNP [dm6]	A	G	4.390e^-4	0.871	INTERGENIC	transposable element FlyBase
3L	4251343	3L_4251343_SNP [dm3] 3L_4251343_SNP [dm6]	C	T	4.395e^-4	0.871	SYNONYMOUS_CODING ago	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	7733859	2R_7733859_SNP [dm3] 2R_11846354_SNP [dm6]	T	C	4.396e^-4	0.871	INTRON Sln
2R	7736276	2R_7736276_SNP [dm3] 2R_11848771_SNP [dm6]	A	G	4.396e^-4	0.871	INTRON Sln
3L	8685381	3L_8685381_SNP [dm3] 3L_8692281_SNP [dm6]	T	A	4.398e^-4	0.871	UPSTREAM CR44526 INTERGENIC	TF binding site mE1_TFBS_cad
3R	24416327	3R_24416327_SNP [dm3] 3R_28590605_SNP [dm6]	C	A	4.398e^-4	0.871	EXON MRE23	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	9932392	3R_9932392_SNP [dm3] 3R_14106670_SNP [dm6]	C	T	4.399e^-4	0.871	NON_SYNONYMOUS_CODING CG12402	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12388894	X_12388894_SNP [dm3] X_12494861_SNP [dm6]	C	T	4.400e^-4	0.871	SYNONYMOUS_CODING Mks1
X	8553804	X_8553804_SNP [dm3] X_8659771_SNP [dm6]	T	G	4.415e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	17058116	2R_17058116_SNP [dm3] 2R_21170611_SNP [dm6]	G	T	4.418e^-4	0.871	UTR_5_PRIME LSm1 UPSTREAM Xpd DOWNSTREAM hng1	TF binding site BDTNP1_TFBS_dl
3L	7206988	3L_7206988_SNP [dm3] 3L_7213888_SNP [dm6]	C	A	4.425e^-4	0.871	INTERGENIC
2L	657001	2L_657001_SNP [dm3] 2L_657001_SNP [dm6]	C	T	4.428e^-4	0.871	SYNONYMOUS_CODING ds
2L	7857211	2L_7857211_INS [dm3] 2L_7857211_INS [dm6]	G	GTGTGCC	4.428e^-4	0.871	DOWNSTREAM TwdlE
2R	3181156	2R_3181156_SNP [dm3] 2R_7293651_SNP [dm6]	C	T	4.441e^-4	0.871	INTRON pwn
3L	7181855	3L_7181855_SNP [dm3] 3L_7188755_SNP [dm6]	A	C	4.446e^-4	0.871	INTRON Dscam2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2662911	X_2662911_SNP [dm3] X_2768878_SNP [dm6]	A	T	4.451e^-4	0.871	INTRON kirre
3R	10433683	3R_10433683_SNP [dm3] 3R_14607961_SNP [dm6]	C	G	4.454e^-4	0.871	UTR_3_PRIME stumps
2L	13188975	2L_13188975_SNP [dm3] 2L_13188975_SNP [dm6]	C	T	4.455e^-4	0.871	NON_SYNONYMOUS_CODING CG16974	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16800569	2L_16800569_SNP [dm3] 2L_16800569_SNP [dm6]	T	A	4.455e^-4	0.871	INTRON Ugt36Bc
2L	16800582	2L_16800582_SNP [dm3] 2L_16800582_SNP [dm6]	C	T	4.455e^-4	0.871	INTRON Ugt36Bc	TF binding site mE1_TFBS_cad
2R	17452514	2R_17452514_SNP [dm3] 2R_21565009_SNP [dm6]	A	G	4.458e^-4	0.871	INTRON CG10440
3L	14877249	3L_14877249_INS [dm3] 3L_14884149_INS [dm6]	A	AA	4.461e^-4	0.871	INTERGENIC
X	21788603	X_21788603_SNP [dm3] X_22386770_SNP [dm6]	T	C	4.466e^-4	0.871	INTERGENIC
3L	9814617	3L_9814617_SNP [dm3] 3L_9821517_SNP [dm6]	A	G	4.466e^-4	0.871	UPSTREAM CG43897 INTRON CG43897
X	4793688	X_4793688_SNP [dm3] X_4899655_SNP [dm6]	G	C	4.474e^-4	0.871	INTRON CG42594	TF binding site mE1_TFBS_HSA
2R	11339459	2R_11339459_SNP [dm3] 2R_15451954_SNP [dm6]	A	C	4.475e^-4	0.871	INTRON CG43729
3L	7159535	3L_7159535_SNP [dm3] 3L_7166435_SNP [dm6]	C	A	4.475e^-4	0.871	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad
3R	12203342	3R_12203342_SNP [dm3] 3R_16377620_SNP [dm6]	T	C	4.481e^-4	0.871	SYNONYMOUS_CODING ss	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6826022	2L_6826022_DEL [dm3] 2L_6826022_DEL [dm6]	TGT	T	4.492e^-4	0.871	INTRON sens-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6174109	3L_6174109_SNP [dm3] 3L_6181009_SNP [dm6]	A	G	4.495e^-4	0.871	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6174112	3L_6174112_SNP [dm3] 3L_6181012_SNP [dm6]	C	T	4.495e^-4	0.871	SYNONYMOUS_CODING CG10274	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19093808	2R_19093808_SNP [dm3] 2R_23206285_SNP [dm6]	T	A	4.497e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	4972878	3L_4972878_SNP [dm3] 3L_4972878_SNP [dm6]	A	G	4.497e^-4	0.871	INTRON Con
2L	1312857	2L_1312857_SNP [dm3] 2L_1312857_SNP [dm6]	T	A	4.499e^-4	0.871	INTERGENIC
2L	4498096	2L_4498096_SNP [dm3] 2L_4498096_SNP [dm6]	G	A	4.501e^-4	0.871	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13966877	3R_13966877_SNP [dm3] 3R_18141155_SNP [dm6]	A	G	4.510e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13966889	3R_13966889_SNP [dm3] 3R_18141167_SNP [dm6]	T	A	4.510e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2637274	3L_2637274_SNP [dm3] 3L_2637274_SNP [dm6]	G	A	4.515e^-4	0.871	NON_SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad
2R	16312646	2R_16312646_DEL [dm3] 2R_20425141_DEL [dm6]	AG	A	4.516e^-4	0.871	INTRON CG12484
2R	16312659	2R_16312659_SNP [dm3] 2R_20425154_SNP [dm6]	T	C	4.516e^-4	0.871	INTRON CG12484
3R	9726526	3R_9726526_SNP [dm3] 3R_13900804_SNP [dm6]	A	G	4.517e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	15265002	X_15265002_SNP [dm3] X_15370969_SNP [dm6]	G	A	4.518e^-4	0.871	INTRON acj6
2L	18394390	2L_18394390_SNP [dm3] 2L_18394390_SNP [dm6]	T	A	4.528e^-4	0.871	DOWNSTREAM Fas3 INTERGENIC
3L	8737464	3L_8737464_SNP [dm3] 3L_8744364_SNP [dm6]	T	G	4.529e^-4	0.871	INTRON Prm
2R	19487801	2R_19487801_SNP [dm3] 2R_23600278_SNP [dm6]	A	T	4.532e^-4	0.871	UPSTREAM CG42560 DOWNSTREAM apt & 2 others INTRON CG42559 & 1 other
3R	12596075	3R_12596075_SNP [dm3] 3R_16770353_SNP [dm6]	A	G	4.535e^-4	0.871	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16240209	3R_16240209_SNP [dm3] 3R_20414487_SNP [dm6]	T	A	4.537e^-4	0.871	INTRON Gfrl
2L	5140633	2L_5140633_SNP [dm3] 2L_5140633_SNP [dm6]	T	C	4.540e^-4	0.871	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
2R	17420935	2R_17420935_INS [dm3] 2R_21533430_INS [dm6]	A	AGTGCGA	4.547e^-4	0.871	INTRON Egfr
X	11314267	X_11314267_SNP [dm3] X_11420234_SNP [dm6]	G	A	4.549e^-4	0.871	INTERGENIC
2L	6922903	2L_6922903_SNP [dm3] 2L_6922903_SNP [dm6]	C	T	4.552e^-4	0.871	INTRON Hrb27C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2867729	2L_2867729_DEL [dm3] 2L_2867729_DEL [dm6]	GT	C	4.552e^-4	0.871	UTR_3_PRIME CG2991 DOWNSTREAM CG31694	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20930462	3R_20930462_SNP [dm3] 3R_25104740_SNP [dm6]	G	A	4.554e^-4	0.871	SYNONYMOUS_CODING CG34027
3L	4820752	3L_4820752_SNP [dm3] 3L_4820752_SNP [dm6]	A	G	4.554e^-4	0.871	SYNONYMOUS_CODING Dhc64C
2R	17056323	2R_17056323_SNP [dm3] 2R_21168818_SNP [dm6]	A	C	4.556e^-4	0.871	UPSTREAM hng1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	13682371	3R_13682371_SNP [dm3] 3R_17856649_SNP [dm6]	A	T	4.556e^-4	0.871	INTRON tinc
2L	2256621	2L_2256621_SNP [dm3] 2L_2256621_SNP [dm6]	T	C	4.564e^-4	0.871	INTERGENIC
2L	8891675	2L_8891675_SNP [dm3] 2L_8891675_SNP [dm6]	G	C	4.569e^-4	0.871	SYNONYMOUS_CODING CG42713
X	4793889	X_4793889_DEL [dm3] X_4899856_DEL [dm6]	AA	A	4.581e^-4	0.872	INTRON CG42594
3L	7570640	3L_7570640_INS [dm3] 3L_7577540_INS [dm6]	T	TA	4.582e^-4	0.872	INTERGENIC
2L	2229083	2L_2229083_SNP [dm3] 2L_2229083_SNP [dm6]	A	T	4.588e^-4	0.872	INTRON rti
2R	9692212	2R_9692212_SNP [dm3] 2R_13804707_SNP [dm6]	G	T	4.597e^-4	0.872	INTRON Cpr50Cb
3L	7161144	3L_7161144_SNP [dm3] 3L_7168044_SNP [dm6]	A	G	4.612e^-4	0.872	INTRON Dscam2	TF binding site mE1_TFBS_chinmo
3R	16239927	3R_16239927_SNP [dm3] 3R_20414205_SNP [dm6]	C	G	4.617e^-4	0.872	INTRON Gfrl
3L	11170952	3L_11170952_SNP [dm3] 3L_11177852_SNP [dm6]	C	T	4.625e^-4	0.872	UTR_3_PRIME GlcAT-P DOWNSTREAM CG14142
2L	4331839	2L_4331839_SNP [dm3] 2L_4331839_SNP [dm6]	G	C	4.638e^-4	0.872	DOWNSTREAM CG16857 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	7675045	2L_7675045_SNP [dm3] 2L_7675045_SNP [dm6]	G	A	4.640e^-4	0.872	UTR_5_PRIME Slob INTRON Myo28B1
3L	4511970	3L_4511970_SNP [dm3] 3L_4511970_SNP [dm6]	C	G	4.646e^-4	0.872	INTRON Tie	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2000406	2L_2000406_DEL [dm3] 2L_2000406_DEL [dm6]	TT	T	4.653e^-4	0.872	SPLICE_SITE_REGION CR43464 INTRON CG33543 & 1 other
2L	9386976	2L_9386976_SNP [dm3] 2L_9386976_SNP [dm6]	C	G	4.656e^-4	0.872	UPSTREAM Aldh INTRON Shawl
2L	6793629	2L_6793629_SNP [dm3] 2L_6793629_SNP [dm6]	A	T	4.660e^-4	0.872	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2424785	2L_2424785_SNP [dm3] 2L_2424785_SNP [dm6]	A	G	4.668e^-4	0.872	UPSTREAM CG44139 DOWNSTREAM CG9886 INTERGENIC
X	2730278	X_2730278_SNP [dm3] X_2836245_SNP [dm6]	A	G	4.680e^-4	0.872	INTRON kirre
3L	2628192	3L_2628192_SNP [dm3] 3L_2628192_SNP [dm6]	T	C	4.681e^-4	0.872	INTRON Pxn	TF binding site BDTNP1_TFBS_sna
3R	6195263	3R_6195263_SNP [dm3] 3R_10369541_SNP [dm6]	A	T	4.684e^-4	0.872	INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl

By genomic position
Variant impact
Gene name

MC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results