DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.477e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.002733
In_2R_NS	0.011209

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1940 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	7315308	3L_7315308_SNP [dm3] 3L_7322208_SNP [dm6]	A	G	1.412e^-6	0.724	SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607	TF binding site mE1_TFBS_sens
3L	10092496	3L_10092496_SNP [dm3] 3L_10099396_SNP [dm6]	T	C	1.580e^-6	0.724	SYNONYMOUS_CODING CG42826 INTRON dpr6
2L	4048482	2L_4048482_SNP [dm3] 2L_4048482_SNP [dm6]	C	A	2.581e^-6	0.724	INTRON ed
2R	16713076	2R_16713076_SNP [dm3] 2R_20825571_SNP [dm6]	A	G	3.405e^-6	0.724	INTRON insc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20313081	3R_20313081_SNP [dm3] 3R_24487359_SNP [dm6]	A	G	3.892e^-6	0.724	INTRON nAChRalpha2
3L	7314757	3L_7314757_SNP [dm3] 3L_7321657_SNP [dm6]	G	A	4.300e^-6	0.724	SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607
2L	7787792	2L_7787792_DEL [dm3] 2L_7787792_DEL [dm6]	AA	A	4.468e^-6	0.724	INTRON CG7149
3R	12509066	3R_12509066_SNP [dm3] 3R_16683344_SNP [dm6]	A	T	4.597e^-6	0.724	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7314852	3L_7314852_SNP [dm3] 3L_7321752_SNP [dm6]	C	T	4.706e^-6	0.724	NON_SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607
X	15436386	X_15436386_DEL [dm3] X_15542353_DEL [dm6]	CC	C	4.766e^-6	0.724	INTRON Ac13E
2R	9907704	2R_9907704_SNP [dm3] 2R_14020199_SNP [dm6]	A	G	5.218e^-6	0.724	INTRON mam
3R	12509069	3R_12509069_SNP [dm3] 3R_16683347_SNP [dm6]	T	C	5.537e^-6	0.724	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14495551	2R_14495551_SNP [dm3] 2R_18608046_SNP [dm6]	T	C	5.909e^-6	0.724	INTRON GEFmeso	TF binding site mE1_TFBS_cad
2L	1419970	2L_1419970_SNP [dm3] 2L_1419970_SNP [dm6]	C	A	6.126e^-6	0.724	NON_SYNONYMOUS_CODING lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	15233361	3L_15233361_SNP [dm3] 3L_15240261_SNP [dm6]	G	T	6.490e^-6	0.724	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_cad
3L	10904778	3L_10904778_SNP [dm3] 3L_10911678_SNP [dm6]	C	T	6.500e^-6	0.724	INTERGENIC
3L	7314774	3L_7314774_SNP [dm3] 3L_7321674_SNP [dm6]	G	A	6.565e^-6	0.724	NON_SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607
2L	16614407	2L_16614407_SNP [dm3] 2L_16614407_SNP [dm6]	C	T	7.093e^-6	0.739	INTRON CG42389
2L	7287410	2L_7287410_SNP [dm3] 2L_7287410_SNP [dm6]	A	G	7.802e^-6	0.758	INTERGENIC
X	19084978	X_19084978_SNP [dm3] X_19190945_SNP [dm6]	A	C	8.086e^-6	0.758	UTR_3_PRIME HP1D3csd DOWNSTREAM Mec2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_h
2R	14124537	2R_14124537_SNP [dm3] 2R_18237032_SNP [dm6]	T	C	8.490e^-6	0.758	DOWNSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	4315136	X_4315136_SNP [dm3] X_4421103_SNP [dm6]	T	C	1.006e^-5	0.83	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	18855266	3R_18855266_SNP [dm3] 3R_23029544_SNP [dm6]	C	T	1.018e^-5	0.83	INTERGENIC	regulatory region REDfly_CRMs
2L	16613556	2L_16613556_SNP [dm3] 2L_16613556_SNP [dm6]	C	T	1.084e^-5	0.846	INTRON CG42389
2L	8210242	2L_8210242_SNP [dm3] 2L_8210242_SNP [dm6]	G	A	1.281e^-5	0.867	DOWNSTREAM CG8419 INTRON Su_var_205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7315263	3L_7315263_SNP [dm3] 3L_7322163_SNP [dm6]	G	A	1.291e^-5	0.867	SYNONYMOUS_CODING RhoGEF4 DOWNSTREAM CG8607	TF binding site mE1_TFBS_sens
3L	15233343	3L_15233343_SNP [dm3] 3L_15240243_SNP [dm6]	A	T	1.352e^-5	0.867	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_cad
2L	16600466	2L_16600466_SNP [dm3] 2L_16600466_SNP [dm6]	T	A	1.361e^-5	0.867	INTRON CG42389	TF binding site mE1_TFBS_Trl
3L	19461403	3L_19461403_SNP [dm3] 3L_19468303_SNP [dm6]	C	T	1.410e^-5	0.867	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
3L	1371369	3L_1371369_SNP [dm3] 3L_1371369_SNP [dm6]	C	G	1.435e^-5	0.867	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
3L	1371371	3L_1371371_SNP [dm3] 3L_1371371_SNP [dm6]	C	T	1.435e^-5	0.867	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
3R	19360525	3R_19360525_SNP [dm3] 3R_23534803_SNP [dm6]	A	T	1.507e^-5	0.883	UPSTREAM CG10170 DOWNSTREAM CG16732 INTERGENIC
3L	15233355	3L_15233355_SNP [dm3] 3L_15240255_SNP [dm6]	C	T	1.571e^-5	0.892	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_cad
2L	16694865	2L_16694865_SNP [dm3] 2L_16694865_SNP [dm6]	T	A	1.778e^-5	0.952	UPSTREAM grp INTRON grp
2L	16696824	2L_16696824_SNP [dm3] 2L_16696824_SNP [dm6]	A	C	1.778e^-5	0.952	DOWNSTREAM CR44975 INTRON grp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2200126	2L_2200126_SNP [dm3] 2L_2200126_SNP [dm6]	A	G	1.841e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	7963140	2L_7963140_SNP [dm3] 2L_7963140_SNP [dm6]	A	G	1.920e^-5	0.955	INTRON Snoo
3R	18855268	3R_18855268_SNP [dm3] 3R_23029546_SNP [dm6]	A	G	2.012e^-5	0.955	INTERGENIC	regulatory region REDfly_CRMs
3R	12509139	3R_12509139_SNP [dm3] 3R_16683417_SNP [dm6]	C	T	2.018e^-5	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	16627790	2L_16627790_SNP [dm3] 2L_16627790_SNP [dm6]	A	G	2.128e^-5	0.955	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	2019278	2L_2019278_SNP [dm3] 2L_2019278_SNP [dm6]	G	A	2.156e^-5	0.955	INTRON CG4238	TF binding site BDTNP1_TFBS_da
3L	14285553	3L_14285553_SNP [dm3] 3L_14292453_SNP [dm6]	A	G	2.180e^-5	0.955	INTRON fz
3L	19461417	3L_19461417_SNP [dm3] 3L_19468317_SNP [dm6]	A	C	2.428e^-5	0.955	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
2R	15785665	2R_15785665_SNP [dm3] 2R_19898160_SNP [dm6]	A	C	2.457e^-5	0.955	EXON CR44572
3L	23811220	3L_23811220_SNP [dm3] 3L_23818120_SNP [dm6]	A	T	2.520e^-5	0.955	INTERGENIC	transposable element FlyBase
3L	6916636	3L_6916636_SNP [dm3] 3L_6923536_SNP [dm6]	A	G	2.609e^-5	0.955	INTERGENIC
3R	22306209	3R_22306209_SNP [dm3] 3R_26480487_SNP [dm6]	T	A	2.670e^-5	0.955	INTRON plum
3R	25344717	3R_25344717_SNP [dm3] 3R_29518995_SNP [dm6]	A	G	2.683e^-5	0.955	INTERGENIC
2R	10679272	2R_10679272_SNP [dm3] 2R_14791767_SNP [dm6]	C	T	2.704e^-5	0.955	INTRON kn	TF binding site BDTNP1_TFBS_dl
2L	7963090	2L_7963090_SNP [dm3] 2L_7963090_SNP [dm6]	A	T	2.723e^-5	0.955	INTRON Snoo
X	2464028	X_2464028_SNP [dm3] X_2569995_SNP [dm6]	C	T	2.853e^-5	0.955	INTRON Pdfr
3R	14342228	3R_14342228_SNP [dm3] 3R_18516506_SNP [dm6]	A	T	2.898e^-5	0.955	INTRON fru	TF binding site BDTNP1_TFBS_twi
3L	11142079	3L_11142079_SNP [dm3] 3L_11148979_SNP [dm6]	A	G	2.934e^-5	0.955	DOWNSTREAM CG6216 INTRON CG32082
2L	2195638	2L_2195638_SNP [dm3] 2L_2195638_SNP [dm6]	T	G	2.935e^-5	0.955	INTRON CG34172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	21324115	3L_21324115_SNP [dm3] 3L_21331015_SNP [dm6]	C	G	3.005e^-5	0.955	INTRON Rab26
2L	18529151	2L_18529151_SNP [dm3] 2L_18529151_SNP [dm6]	T	C	3.057e^-5	0.955	SYNONYMOUS_CODING CG10211	TF binding site mE1_TFBS_cad
2L	8209898	2L_8209898_SNP [dm3] 2L_8209898_SNP [dm6]	G	A	3.169e^-5	0.955	SYNONYMOUS_CODING Su_var_205 DOWNSTREAM CG8419	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16578088	2L_16578088_SNP [dm3] 2L_16578088_SNP [dm6]	A	G	3.219e^-5	0.955	INTRON CG42389
2R	16686743	2R_16686743_SNP [dm3] 2R_20799238_SNP [dm6]	A	G	3.375e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10103234	3L_10103234_SNP [dm3] 3L_10110134_SNP [dm6]	A	G	3.496e^-5	0.955	INTRON dpr6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10092492	3L_10092492_SNP [dm3] 3L_10099392_SNP [dm6]	G	C	3.499e^-5	0.955	NON_SYNONYMOUS_CODING CG42826 INTRON dpr6
2L	15896700	2L_15896700_SNP [dm3] 2L_15896700_SNP [dm6]	A	G	3.541e^-5	0.955	INTRON CG31735
X	9009579	X_9009579_SNP [dm3] X_9115546_SNP [dm6]	C	T	3.634e^-5	0.955	SYNONYMOUS_CODING AP-1gamma
2L	3981132	2L_3981132_SNP [dm3] 2L_3981132_SNP [dm6]	C	A	3.887e^-5	0.955	INTRON fred
3L	2375522	3L_2375522_SNP [dm3] 3L_2375522_SNP [dm6]	G	C	3.980e^-5	0.955	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877	TF binding site mE1_TFBS_sens
2L	16665443	2L_16665443_SNP [dm3] 2L_16665443_SNP [dm6]	C	T	4.028e^-5	0.955	NON_SYNONYMOUS_CODING Trpgamma	TF binding site mE1_TFBS_cad
2R	15990623	2R_15990623_SNP [dm3] 2R_20103118_SNP [dm6]	A	G	4.058e^-5	0.955	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1371362	3L_1371362_SNP [dm3] 3L_1371362_SNP [dm6]	C	A	4.061e^-5	0.955	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_HSA
3R	14675485	3R_14675485_SNP [dm3] 3R_18849763_SNP [dm6]	A	G	4.074e^-5	0.955	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16653973	2L_16653973_SNP [dm3] 2L_16653973_SNP [dm6]	G	A	4.201e^-5	0.955	INTRON CG42389	TF binding site mE1_TFBS_inv
2L	7787974	2L_7787974_SNP [dm3] 2L_7787974_SNP [dm6]	A	G	4.211e^-5	0.955	SYNONYMOUS_CODING CG7149
3R	25349798	3R_25349798_SNP [dm3] 3R_29524076_SNP [dm6]	C	G	4.356e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3102565	2L_3102565_SNP [dm3] 2L_3102565_SNP [dm6]	C	A	4.385e^-5	0.955	INTRON toc
2L	2198421	2L_2198421_SNP [dm3] 2L_2198421_SNP [dm6]	G	T	4.393e^-5	0.955	UPSTREAM CG34172 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2204992	2L_2204992_SNP [dm3] 2L_2204992_SNP [dm6]	G	A	4.412e^-5	0.955	SYNONYMOUS_CODING CG31668	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1031394	2L_1031394_SNP [dm3] 2L_1031394_SNP [dm6]	A	T	4.437e^-5	0.955	INTRON IA-2
2R	7342643	2R_7342643_SNP [dm3] 2R_11455138_SNP [dm6]	C	T	4.467e^-5	0.955	SYNONYMOUS_CODING E_Pc_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15874811	2R_15874811_SNP [dm3] 2R_19987306_SNP [dm6]	A	T	4.481e^-5	0.955	INTERGENIC
3R	22309643	3R_22309643_SNP [dm3] 3R_26483921_SNP [dm6]	T	C	4.546e^-5	0.955	INTRON plum
3L	15233346	3L_15233346_SNP [dm3] 3L_15240246_SNP [dm6]	A	G	4.619e^-5	0.955	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_cad
3L	14907435	3L_14907435_SNP [dm3] 3L_14914335_SNP [dm6]	T	A	4.640e^-5	0.955	INTRON DCX-EMAP
2L	7787341	2L_7787341_DEL [dm3] 2L_7787341_DEL [dm6]	AA	A	4.646e^-5	0.955	INTRON CG7149
2L	16629127	2L_16629127_SNP [dm3] 2L_16629127_SNP [dm6]	A	T	4.684e^-5	0.955	INTRON CG42389 EXON CR44151
3L	18426856	3L_18426856_MNP [dm3] 3L_18433756_MNP [dm6]	TTC	AAG	4.708e^-5	0.955	INTERGENIC
2R	15782343	2R_15782343_SNP [dm3] 2R_19894838_SNP [dm6]	G	A	4.743e^-5	0.955	INTERGENIC
2L	2195572	2L_2195572_SNP [dm3] 2L_2195572_SNP [dm6]	T	C	4.784e^-5	0.955	INTRON CG34172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	16677922	2L_16677922_SNP [dm3] 2L_16677922_SNP [dm6]	T	A	4.986e^-5	0.955	NON_SYNONYMOUS_CODING her UPSTREAM mir-2497	TF binding site mE1_TFBS_sens
2L	2189255	2L_2189255_SNP [dm3] 2L_2189255_SNP [dm6]	C	A	5.028e^-5	0.955	UPSTREAM CR44065 DOWNSTREAM CG10874 INTRON CR45290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6308908	3L_6308908_SNP [dm3] 3L_6315808_SNP [dm6]	G	A	5.031e^-5	0.955	INTERGENIC
3R	25349132	3R_25349132_DEL [dm3] 3R_29523410_DEL [dm6]	ATGTC	A	5.121e^-5	0.955	INTERGENIC	TF binding site mE1_TFBS_sens
2L	2195621	2L_2195621_DEL [dm3] 2L_2195621_DEL [dm6]	AT	G	5.121e^-5	0.955	INTRON CG34172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2R	9907828	2R_9907828_SNP [dm3] 2R_14020323_SNP [dm6]	T	A	5.224e^-5	0.955	INTRON mam
3L	19461284	3L_19461284_SNP [dm3] 3L_19468184_SNP [dm6]	T	G	5.254e^-5	0.955	DOWNSTREAM CG32214 INTERGENIC
2L	8209514	2L_8209514_SNP [dm3] 2L_8209514_SNP [dm6]	C	T	5.310e^-5	0.955	UTR_3_PRIME CG8419 DOWNSTREAM Su_var_205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	11082148	3R_11082148_SNP [dm3] 3R_15256426_SNP [dm6]	A	G	5.379e^-5	0.955	UTR_3_PRIME CG42404
2L	6377011	2L_6377011_SNP [dm3] 2L_6377011_SNP [dm6]	A	G	5.384e^-5	0.955	SYNONYMOUS_CODING slam DOWNSTREAM CG42368	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24632711	3R_24632711_SNP [dm3] 3R_28806989_SNP [dm6]	G	C	5.388e^-5	0.955	DOWNSTREAM wdn INTRON CheB98a
2L	3725386	2L_3725386_SNP [dm3] 2L_3725386_SNP [dm6]	C	A	5.471e^-5	0.955	INTRON Shaw
3L	3891736	3L_3891736_SNP [dm3] 3L_3891736_SNP [dm6]	A	C	5.511e^-5	0.955	UPSTREAM Fie EXON CR45422
2L	2199923	2L_2199923_SNP [dm3] 2L_2199923_SNP [dm6]	G	A	5.615e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_inv mE1_TFBS_Trl
3L	16000609	3L_16000609_SNP [dm3] 3L_16007509_SNP [dm6]	G	T	5.712e^-5	0.955	SYNONYMOUS_CODING mib1 DOWNSTREAM mRpS31	TF binding site mE1_TFBS_cad
3R	19360524	3R_19360524_SNP [dm3] 3R_23534802_SNP [dm6]	T	C	5.724e^-5	0.955	UPSTREAM CG10170 DOWNSTREAM CG16732 INTERGENIC
2L	7280658	2L_7280658_SNP [dm3] 2L_7280658_SNP [dm6]	C	G	5.732e^-5	0.955	INTERGENIC
2L	7280660	2L_7280660_SNP [dm3] 2L_7280660_SNP [dm6]	G	A	5.732e^-5	0.955	INTERGENIC
3L	20157726	3L_20157726_SNP [dm3] 3L_20164626_SNP [dm6]	C	T	5.807e^-5	0.955	INTRON CG42674
3L	20157730	3L_20157730_SNP [dm3] 3L_20164630_SNP [dm6]	C	T	5.807e^-5	0.955	INTRON CG42674
2L	16578069	2L_16578069_SNP [dm3] 2L_16578069_SNP [dm6]	G	C	5.837e^-5	0.955	INTRON CG42389
2L	9333092	2L_9333092_SNP [dm3] 2L_9333092_SNP [dm6]	G	A	5.854e^-5	0.955	UPSTREAM Eaat1 INTERGENIC
2L	9333135	2L_9333135_SNP [dm3] 2L_9333135_SNP [dm6]	G	A	5.854e^-5	0.955	UPSTREAM Eaat1 INTERGENIC
X	4306081	X_4306081_SNP [dm3] X_4412048_SNP [dm6]	A	G	5.958e^-5	0.955	UPSTREAM bi INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	25654921	3R_25654921_DEL [dm3] 3R_29829199_DEL [dm6]	TT	T	6.000e^-5	0.955	INTRON Atg16	enhancer mE1_CBP_Enhancers
2L	4002965	2L_4002965_SNP [dm3] 2L_4002965_SNP [dm6]	T	C	6.002e^-5	0.955	INTERGENIC
2L	20855768	2L_20855768_DEL [dm3] 2L_20855768_DEL [dm6]	TT	T	6.106e^-5	0.955	INTRON twit	TF binding site mE1_TFBS_inv
3R	26858593	3R_26858593_SNP [dm3] 3R_31032871_SNP [dm6]	T	A	6.111e^-5	0.955	INTERGENIC
2R	13796197	2R_13796197_SNP [dm3] 2R_17908692_SNP [dm6]	G	A	6.150e^-5	0.955	INTRON Elk
X	6524667	X_6524667_SNP [dm3] X_6630634_SNP [dm6]	T	A	6.227e^-5	0.955	INTRON pigs
X	15436548	X_15436548_SNP [dm3] X_15542515_SNP [dm6]	A	T	6.332e^-5	0.955	INTRON Ac13E
X	4702901	X_4702901_SNP [dm3] X_4808868_SNP [dm6]	C	G	6.487e^-5	0.955	INTERGENIC
2L	20855688	2L_20855688_SNP [dm3] 2L_20855688_SNP [dm6]	G	C	6.572e^-5	0.955	INTRON twit	TF binding site mE1_TFBS_inv
3R	22309564	3R_22309564_SNP [dm3] 3R_26483842_SNP [dm6]	T	A	6.635e^-5	0.955	INTRON plum
3R	22636089	3R_22636089_SNP [dm3] 3R_26810367_SNP [dm6]	A	C	6.647e^-5	0.955	INTRON Tl
3L	10101132	3L_10101132_SNP [dm3] 3L_10108032_SNP [dm6]	T	A	6.713e^-5	0.955	INTRON dpr6
2L	12672703	2L_12672703_SNP [dm3] 2L_12672703_SNP [dm6]	C	A	6.790e^-5	0.955	INTRON pdm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	12272279	2L_12272279_INS [dm3] 2L_12272279_INS [dm6]	C	CC	6.798e^-5	0.955	INTRON aret
3R	25360514	3R_25360514_SNP [dm3] 3R_29534792_SNP [dm6]	T	A	6.811e^-5	0.955	INTRON CR43613	TF binding site mE1_TFBS_chinmo
3L	10372043	3L_10372043_INS [dm3] 3L_10378943_INS [dm6]	A	AGTAA	6.816e^-5	0.955	INTERGENIC
3L	5789980	3L_5789980_SNP [dm3] 3L_5796880_SNP [dm6]	G	A	7.090e^-5	0.955	UPSTREAM Tektin-C DOWNSTREAM S6k INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo
3L	19461407	3L_19461407_SNP [dm3] 3L_19468307_SNP [dm6]	C	G	7.094e^-5	0.955	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
3L	12097847	3L_12097847_SNP [dm3] 3L_12104747_SNP [dm6]	T	C	7.109e^-5	0.955	INTERGENIC
3R	22309730	3R_22309730_SNP [dm3] 3R_26484008_SNP [dm6]	T	A	7.117e^-5	0.955	INTRON plum
3L	10619106	3L_10619106_DEL [dm3] 3L_10626006_DEL [dm6]	AA	A	7.155e^-5	0.955	UPSTREAM CG34238 & 1 other INTERGENIC
3L	1514418	3L_1514418_SNP [dm3] 3L_1514418_SNP [dm6]	T	A	7.173e^-5	0.955	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24954654	3R_24954654_SNP [dm3] 3R_29128932_SNP [dm6]	G	A	7.283e^-5	0.955	DOWNSTREAM CG11880 INTRON dgt6	TF binding site mE1_TFBS_cad
X	20818666	X_20818666_SNP [dm3] X_20947639_SNP [dm6]	G	A	7.294e^-5	0.955	INTERGENIC
3L	13752769	3L_13752769_SNP [dm3] 3L_13759669_SNP [dm6]	A	C	7.349e^-5	0.955	INTRON bru-3
2L	20855716	2L_20855716_INS [dm3] 2L_20855716_INS [dm6]	T	TAATT	7.367e^-5	0.955	INTRON twit	TF binding site mE1_TFBS_inv
2R	9907853	2R_9907853_SNP [dm3] 2R_14020348_SNP [dm6]	T	C	7.521e^-5	0.955	INTRON mam
2L	3141986	2L_3141986_SNP [dm3] 2L_3141986_SNP [dm6]	G	A	7.533e^-5	0.955	INTRON toc
2L	7787801	2L_7787801_SNP [dm3] 2L_7787801_SNP [dm6]	A	T	7.612e^-5	0.955	INTRON CG7149
2L	1065992	2L_1065992_SNP [dm3] 2L_1065992_SNP [dm6]	T	A	7.787e^-5	0.955	INTRON S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5870268	2L_5870268_SNP [dm3] 2L_5870268_SNP [dm6]	A	G	7.825e^-5	0.955	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	16635499	2L_16635499_SNP [dm3] 2L_16635499_SNP [dm6]	T	C	7.874e^-5	0.955	INTRON CG42389
3L	16044906	3L_16044906_SNP [dm3] 3L_16051806_SNP [dm6]	C	A	7.917e^-5	0.955	UPSTREAM Mbs & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1514629	3L_1514629_SNP [dm3] 3L_1514629_SNP [dm6]	G	A	8.076e^-5	0.955	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
2L	9341963	2L_9341963_SNP [dm3] 2L_9341963_SNP [dm6]	A	C	8.242e^-5	0.955	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
2L	6073878	2L_6073878_SNP [dm3] 2L_6073878_SNP [dm6]	T	A	8.303e^-5	0.955	UTR_3_PRIME Kr-h2 DOWNSTREAM CR43801 & 1 other
X	15028025	X_15028025_SNP [dm3] X_15133992_SNP [dm6]	A	G	8.345e^-5	0.955	INTRON drd
X	18800097	X_18800097_SNP [dm3] X_18906064_SNP [dm6]	A	T	8.557e^-5	0.955	INTRON CG7378
3L	6807630	3L_6807630_SNP [dm3] 3L_6814530_SNP [dm6]	C	T	8.833e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	15438104	X_15438104_SNP [dm3] X_15544071_SNP [dm6]	T	A	8.899e^-5	0.955	INTRON Ac13E
X	15438106	X_15438106_DEL [dm3] X_15544073_DEL [dm6]	GT	G	8.899e^-5	0.955	INTRON Ac13E
X	15438112	X_15438112_SNP [dm3] X_15544079_SNP [dm6]	T	C	8.899e^-5	0.955	INTRON Ac13E
2L	8209460	2L_8209460_SNP [dm3] 2L_8209460_SNP [dm6]	C	A	8.919e^-5	0.955	UTR_3_PRIME CG8419 DOWNSTREAM Su_var_205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	18642903	3R_18642903_DEL [dm3] 3R_22817181_DEL [dm6]	TT	T	8.922e^-5	0.955	INTERGENIC
3R	11027729	3R_11027729_SNP [dm3] 3R_15202007_SNP [dm6]	C	T	8.981e^-5	0.955	INTRON CG42542
2L	6061594	2L_6061594_SNP [dm3] 2L_6061594_SNP [dm6]	G	A	9.011e^-5	0.955	SYNONYMOUS_CODING CG9140 DOWNSTREAM CG34180	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25669806	3R_25669806_SNP [dm3] 3R_29844084_SNP [dm6]	A	G	9.021e^-5	0.955	INTRON Cad99C
2R	12316916	2R_12316916_SNP [dm3] 2R_16429411_SNP [dm6]	T	C	9.072e^-5	0.955	NON_SYNONYMOUS_CODING Sema-2b UTR_3_PRIME Sema-2b INTRON Sema-2b
X	5096653	X_5096653_SNP [dm3] X_5202620_SNP [dm6]	T	C	9.097e^-5	0.955	INTRON rg & 1 other
2R	7052367	2R_7052367_INS [dm3] 2R_11164862_INS [dm6]	A	ATA	9.161e^-5	0.955	INTRON shn & 1 other
2R	11341004	2R_11341004_SNP [dm3] 2R_15453499_SNP [dm6]	C	A	9.287e^-5	0.955	INTRON CG43729
2R	9907819	2R_9907819_SNP [dm3] 2R_14020314_SNP [dm6]	T	A	9.341e^-5	0.955	INTRON mam
X	16065065	X_16065065_DEL [dm3] X_16171032_DEL [dm6]	AACTGTATCTGTGCGCA...	A	9.367e^-5	0.955	INTERGENIC
3L	16065383	3L_16065383_SNP [dm3] 3L_16072283_SNP [dm6]	G	T	9.392e^-5	0.955	INTRON Mbs
2L	5687414	2L_5687414_SNP [dm3] 2L_5687414_SNP [dm6]	C	T	9.419e^-5	0.955	INTERGENIC
3L	2703762	3L_2703762_SNP [dm3] 3L_2703762_SNP [dm6]	T	G	9.462e^-5	0.955	INTRON Fife
2R	13595272	2R_13595272_SNP [dm3] 2R_17707767_SNP [dm6]	C	T	9.469e^-5	0.955	SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21469209	3R_21469209_SNP [dm3] 3R_25643487_SNP [dm6]	C	T	9.493e^-5	0.955	INTRON jigr1
2R	17056738	2R_17056738_SNP [dm3] 2R_21169233_SNP [dm6]	G	C	9.511e^-5	0.955	SYNONYMOUS_CODING hng1 UPSTREAM CG4266 DOWNSTREAM LSm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25652085	3R_25652085_SNP [dm3] 3R_29826363_SNP [dm6]	T	C	9.666e^-5	0.955	DOWNSTREAM neo & 1 other INTERGENIC
X	18800092	X_18800092_SNP [dm3] X_18906059_SNP [dm6]	A	G	9.695e^-5	0.955	INTRON CG7378
X	15315967	X_15315967_SNP [dm3] X_15421934_SNP [dm6]	T	A	9.696e^-5	0.955	INTRON Cngl
X	15315969	X_15315969_SNP [dm3] X_15421936_SNP [dm6]	C	T	9.696e^-5	0.955	INTRON Cngl
3L	2703738	3L_2703738_SNP [dm3] 3L_2703738_SNP [dm6]	G	A	9.767e^-5	0.955	INTRON Fife
2L	6742350	2L_6742350_SNP [dm3] 2L_6742350_SNP [dm6]	T	C	9.805e^-5	0.955	UPSTREAM CG11221 INTERGENIC
3L	19461443	3L_19461443_MNP [dm3] 3L_19468343_MNP [dm6]	ACGG	TAAA	9.854e^-5	0.955	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
3R	13416328	3R_13416328_SNP [dm3] 3R_17590606_SNP [dm6]	A	G	9.861e^-5	0.955	INTERGENIC
2R	3173665	2R_3173665_SNP [dm3] 2R_7286160_SNP [dm6]	G	A	1.000e^-4	0.955	INTRON pwn
2L	920071	2L_920071_SNP [dm3] 2L_920071_SNP [dm6]	T	C	1.004e^-4	0.955	INTERGENIC
3L	19461421	3L_19461421_SNP [dm3] 3L_19468321_SNP [dm6]	G	A	1.013e^-4	0.955	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
3L	19461422	3L_19461422_SNP [dm3] 3L_19468322_SNP [dm6]	T	A	1.013e^-4	0.955	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
3L	19461435	3L_19461435_SNP [dm3] 3L_19468335_SNP [dm6]	G	T	1.013e^-4	0.955	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
3R	20112550	3R_20112550_SNP [dm3] 3R_24286828_SNP [dm6]	C	T	1.018e^-4	0.955	SYNONYMOUS_CODING CG6356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9379837	2L_9379837_SNP [dm3] 2L_9379837_SNP [dm6]	A	G	1.032e^-4	0.955	SYNONYMOUS_CODING Shawl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13768208	3L_13768208_DEL [dm3] 3L_13775108_DEL [dm6]	CC	C	1.034e^-4	0.955	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14039455	3L_14039455_SNP [dm3] 3L_14046355_SNP [dm6]	C	A	1.050e^-4	0.955	SYNONYMOUS_CODING blue	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3138958	2L_3138958_SNP [dm3] 2L_3138958_SNP [dm6]	G	A	1.052e^-4	0.955	INTRON toc
2R	9915942	2R_9915942_SNP [dm3] 2R_14028437_SNP [dm6]	C	A	1.057e^-4	0.955	UPSTREAM CG18371 INTRON mam
3R	14342229	3R_14342229_SNP [dm3] 3R_18516507_SNP [dm6]	A	G	1.071e^-4	0.955	INTRON fru	TF binding site BDTNP1_TFBS_twi
X	2546797	X_2546797_SNP [dm3] X_2652764_SNP [dm6]	C	G	1.071e^-4	0.955	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3789171	X_3789171_SNP [dm3] X_3895138_SNP [dm6]	G	C	1.072e^-4	0.955	UTR_3_PRIME CG42541	insulator Insulator_Class_I.mE01
X	3006211	X_3006211_SNP [dm3] X_3112178_SNP [dm6]	C	G	1.079e^-4	0.955	INTRON kirre
2R	3206185	2R_3206185_SNP [dm3] 2R_7318680_SNP [dm6]	C	T	1.084e^-4	0.955	UTR_3_PRIME Dscam1 DOWNSTREAM Dscam1
2L	3141472	2L_3141472_SNP [dm3] 2L_3141472_SNP [dm6]	G	C	1.090e^-4	0.955	INTRON toc
2L	2019108	2L_2019108_SNP [dm3] 2L_2019108_SNP [dm6]	C	T	1.092e^-4	0.955	INTRON CG4238	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15233352	3L_15233352_SNP [dm3] 3L_15240252_SNP [dm6]	T	C	1.093e^-4	0.955	UTR_3_PRIME Tollo	TF binding site mE1_TFBS_cad
2R	5997280	2R_5997280_SNP [dm3] 2R_10109775_SNP [dm6]	C	T	1.094e^-4	0.955	UTR_5_PRIME Pfk DOWNSTREAM 14-3-3zeta
3L	15043847	3L_15043847_SNP [dm3] 3L_15050747_SNP [dm6]	C	A	1.100e^-4	0.955	NON_SYNONYMOUS_CODING CG12310 UPSTREAM CG18581 DOWNSTREAM CG43679 INTRON Sytbeta
2L	2166047	2L_2166047_SNP [dm3] 2L_2166047_SNP [dm6]	T	C	1.105e^-4	0.955	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3173648	2R_3173648_SNP [dm3] 2R_7286143_SNP [dm6]	C	T	1.107e^-4	0.955	INTRON pwn
2R	8922982	2R_8922982_SNP [dm3] 2R_13035477_SNP [dm6]	C	G	1.113e^-4	0.955	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6838263	3L_6838263_DEL [dm3] 3L_6845163_DEL [dm6]	AGA	TT	1.114e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13983875	2L_13983875_SNP [dm3] 2L_13983875_SNP [dm6]	G	C	1.115e^-4	0.955	SYNONYMOUS_CODING rk DOWNSTREAM NimC2	TF binding site mE1_TFBS_chinmo
3L	10372152	3L_10372152_SNP [dm3] 3L_10379052_SNP [dm6]	T	C	1.115e^-4	0.955	INTERGENIC
2L	8210311	2L_8210311_SNP [dm3] 2L_8210311_SNP [dm6]	G	A	1.136e^-4	0.955	DOWNSTREAM CG8419 INTRON Su_var_205	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	18273946	2R_18273946_SNP [dm3] 2R_22386441_SNP [dm6]	T	C	1.146e^-4	0.955	UTR_5_PRIME CG13506 UPSTREAM CR44757
2R	16457358	2R_16457358_SNP [dm3] 2R_20569853_SNP [dm6]	C	T	1.152e^-4	0.955	INTRON qsm	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24632739	3R_24632739_SNP [dm3] 3R_28807017_SNP [dm6]	C	A	1.160e^-4	0.955	DOWNSTREAM wdn INTRON CheB98a
3R	18692449	3R_18692449_SNP [dm3] 3R_22866727_SNP [dm6]	A	G	1.164e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18972435	2R_18972435_SNP [dm3] 2R_23084912_SNP [dm6]	T	A	1.174e^-4	0.955	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3844777	2R_3844777_SNP [dm3] 2R_7957272_SNP [dm6]	C	T	1.176e^-4	0.955	SYNONYMOUS_CODING CG2906 DOWNSTREAM CG2915	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4306101	X_4306101_SNP [dm3] X_4412068_SNP [dm6]	C	T	1.180e^-4	0.955	UPSTREAM bi INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	15959381	2L_15959381_SNP [dm3] 2L_15959381_SNP [dm6]	G	T	1.180e^-4	0.955	UTR_3_PRIME CG18063 UPSTREAM CR43803 INTRON beat-Ib
2L	18037610	2L_18037610_SNP [dm3] 2L_18037610_SNP [dm6]	A	G	1.180e^-4	0.955	INTRON rdo
3R	6753023	3R_6753023_SNP [dm3] 3R_10927301_SNP [dm6]	C	T	1.190e^-4	0.955	INTERGENIC
X	11924185	X_11924185_SNP [dm3] X_12030152_SNP [dm6]	G	T	1.198e^-4	0.955	SYNONYMOUS_CODING Cyp311a1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	21161583	X_21161583_SNP [dm3] X_21290556_SNP [dm6]	T	C	1.201e^-4	0.955	SYNONYMOUS_CODING CG1494
3R	26557062	3R_26557062_SNP [dm3] 3R_30731340_SNP [dm6]	A	G	1.205e^-4	0.955	UPSTREAM CG11313 INTERGENIC
3R	12509169	3R_12509169_SNP [dm3] 3R_16683447_SNP [dm6]	T	A	1.213e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	12509170	3R_12509170_SNP [dm3] 3R_16683448_SNP [dm6]	A	C	1.213e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	12509179	3R_12509179_SNP [dm3] 3R_16683457_SNP [dm6]	T	A	1.236e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	11340118	2R_11340118_SNP [dm3] 2R_15452613_SNP [dm6]	A	C	1.240e^-4	0.955	INTRON CG43729
3R	10637525	3R_10637525_SNP [dm3] 3R_14811803_SNP [dm6]	G	A	1.246e^-4	0.955	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_inv
2L	16005700	2L_16005700_SNP [dm3] 2L_16005700_SNP [dm6]	G	A	1.281e^-4	0.955	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
2L	3101446	2L_3101446_SNP [dm3] 2L_3101446_SNP [dm6]	A	C	1.287e^-4	0.955	INTRON toc
2R	9907842	2R_9907842_SNP [dm3] 2R_14020337_SNP [dm6]	A	T	1.297e^-4	0.955	INTRON mam
X	3247705	X_3247705_SNP [dm3] X_3353672_SNP [dm6]	C	A	1.313e^-4	0.955	INTERGENIC
3R	13714895	3R_13714895_SNP [dm3] 3R_17889173_SNP [dm6]	T	C	1.316e^-4	0.955	INTRON Rim
2L	2195514	2L_2195514_SNP [dm3] 2L_2195514_SNP [dm6]	C	G	1.316e^-4	0.955	INTRON CG34172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	2198466	2L_2198466_SNP [dm3] 2L_2198466_SNP [dm6]	C	T	1.316e^-4	0.955	UPSTREAM CG34172 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2202796	2L_2202796_SNP [dm3] 2L_2202796_SNP [dm6]	T	A	1.316e^-4	0.955	DOWNSTREAM CG31668 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3750278	3L_3750278_SNP [dm3] 3L_3750278_SNP [dm6]	C	A	1.319e^-4	0.955	INTRON CG32264
2L	861393	2L_861393_SNP [dm3] 2L_861393_SNP [dm6]	C	A	1.323e^-4	0.955	DOWNSTREAM aru INTRON CG13950	TF binding site mE1_TFBS_chinmo
3R	22349880	3R_22349880_SNP [dm3] 3R_26524158_SNP [dm6]	T	C	1.323e^-4	0.955	INTRON plum
X	18647182	X_18647182_SNP [dm3] X_18753149_SNP [dm6]	A	T	1.327e^-4	0.955	INTERGENIC
3L	18389615	3L_18389615_SNP [dm3] 3L_18396515_SNP [dm6]	A	C	1.334e^-4	0.955	INTERGENIC
3R	12331627	3R_12331627_SNP [dm3] 3R_16505905_SNP [dm6]	G	A	1.339e^-4	0.955	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20155299	3L_20155299_SNP [dm3] 3L_20162199_SNP [dm6]	A	T	1.339e^-4	0.955	INTRON CG42674
2R	7259164	2R_7259164_SNP [dm3] 2R_11371659_SNP [dm6]	A	T	1.340e^-4	0.955	UPSTREAM Tapdelta INTERGENIC
X	6524668	X_6524668_SNP [dm3] X_6630635_SNP [dm6]	C	A	1.351e^-4	0.955	INTRON pigs
3R	12509205	3R_12509205_SNP [dm3] 3R_16683483_SNP [dm6]	A	C	1.356e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25346528	3R_25346528_SNP [dm3] 3R_29520806_SNP [dm6]	A	G	1.359e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	4877476	2R_4877476_SNP [dm3] 2R_8989971_SNP [dm6]	C	G	1.369e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19107563	2R_19107563_SNP [dm3] 2R_23220040_SNP [dm6]	T	G	1.369e^-4	0.955	INTERGENIC
2R	9589144	2R_9589144_SNP [dm3] 2R_13701639_SNP [dm6]	A	G	1.374e^-4	0.955	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16688924	2L_16688924_SNP [dm3] 2L_16688924_SNP [dm6]	G	C	1.378e^-4	0.955	INTRON grp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15874868	2R_15874868_SNP [dm3] 2R_19987363_SNP [dm6]	G	T	1.388e^-4	0.955	INTERGENIC
3L	10254843	3L_10254843_SNP [dm3] 3L_10261743_SNP [dm6]	T	C	1.388e^-4	0.955	INTERGENIC
2R	3842584	2R_3842584_INS [dm3] 2R_7955079_INS [dm6]	C	CCTTAGCATCCCTGATCTGG...	1.388e^-4	0.955	UPSTREAM CG14764 INTRON CG14764
2R	3842632	2R_3842632_INS [dm3] 2R_7955127_INS [dm6]	C	CCCCAGCTTCTT...	1.388e^-4	0.955	UPSTREAM CG14764 INTRON CG14764	TF binding site BDTNP1_TFBS_dl
2R	3842634	2R_3842634_INS [dm3] 2R_7955129_INS [dm6]	G	GAGCT	1.388e^-4	0.955	UPSTREAM CG14764 INTRON CG14764	TF binding site BDTNP1_TFBS_dl
X	15436389	X_15436389_SNP [dm3] X_15542356_SNP [dm6]	G	T	1.394e^-4	0.955	INTRON Ac13E
X	12211904	X_12211904_SNP [dm3] X_12317871_SNP [dm6]	G	T	1.395e^-4	0.955	INTRON Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2202582	2L_2202582_SNP [dm3] 2L_2202582_SNP [dm6]	A	G	1.406e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18037630	2L_18037630_SNP [dm3] 2L_18037630_SNP [dm6]	T	C	1.413e^-4	0.955	INTRON rdo
2L	3130503	2L_3130503_SNP [dm3] 2L_3130503_SNP [dm6]	C	A	1.414e^-4	0.955	INTRON toc
2L	3132073	2L_3132073_SNP [dm3] 2L_3132073_SNP [dm6]	C	G	1.414e^-4	0.955	INTRON toc
3L	6064736	3L_6064736_SNP [dm3] 3L_6071636_SNP [dm6]	T	C	1.419e^-4	0.955	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	18642846	3R_18642846_SNP [dm3] 3R_22817124_SNP [dm6]	T	C	1.423e^-4	0.955	UPSTREAM CG13840 INTERGENIC
2R	4877490	2R_4877490_SNP [dm3] 2R_8989985_SNP [dm6]	C	G	1.424e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12314225	2R_12314225_SNP [dm3] 2R_16426720_SNP [dm6]	C	T	1.436e^-4	0.955	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2199910	2L_2199910_SNP [dm3] 2L_2199910_SNP [dm6]	G	T	1.439e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_inv mE1_TFBS_Trl
2L	12164561	2L_12164561_SNP [dm3] 2L_12164561_SNP [dm6]	G	C	1.444e^-4	0.955	SYNONYMOUS_CODING ZnT33D INTRON CG31760
2R	10708175	2R_10708175_SNP [dm3] 2R_14820670_SNP [dm6]	A	C	1.451e^-4	0.955	UPSTREAM CG10202 INTERGENIC	TF binding site mE1_TFBS_Kr
3L	18426853	3L_18426853_INS [dm3] 3L_18433753_INS [dm6]	A	AAGTAAGTAA	1.457e^-4	0.955	INTERGENIC
2R	14124645	2R_14124645_SNP [dm3] 2R_18237140_SNP [dm6]	A	T	1.481e^-4	0.955	DOWNSTREAM fj INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	6340801	2R_6340801_SNP [dm3] 2R_10453296_SNP [dm6]	C	T	1.482e^-4	0.955	UPSTREAM Cyp49a1 INTRON Galphao & 1 other
3L	13019771	3L_13019771_SNP [dm3] 3L_13026671_SNP [dm6]	A	C	1.489e^-4	0.955	UPSTREAM Zmynd10 INTERGENIC
3L	13191848	3L_13191848_SNP [dm3] 3L_13198748_SNP [dm6]	T	C	1.494e^-4	0.955	INTERGENIC
2L	18037625	2L_18037625_SNP [dm3] 2L_18037625_SNP [dm6]	C	T	1.519e^-4	0.955	INTRON rdo
3L	17978943	3L_17978943_SNP [dm3] 3L_17985843_SNP [dm6]	A	T	1.521e^-4	0.955	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11945078	3L_11945078_SNP [dm3] 3L_11951978_SNP [dm6]	T	A	1.534e^-4	0.955	NON_SYNONYMOUS_CODING CG17826 DOWNSTREAM obst-G	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13924696	X_13924696_SNP [dm3] X_14030663_SNP [dm6]	A	C	1.537e^-4	0.955	INTERGENIC
3L	21144685	3L_21144685_SNP [dm3] 3L_21151585_SNP [dm6]	G	C	1.541e^-4	0.955	UPSTREAM Ac78C INTRON Ac78C
2R	9907871	2R_9907871_SNP [dm3] 2R_14020366_SNP [dm6]	A	C	1.541e^-4	0.955	INTRON mam
2L	20855685	2L_20855685_SNP [dm3] 2L_20855685_SNP [dm6]	C	T	1.546e^-4	0.955	INTRON twit	TF binding site mE1_TFBS_inv
2L	18543074	2L_18543074_SNP [dm3] 2L_18543074_SNP [dm6]	G	C	1.547e^-4	0.955	INTRON Pde11
2L	16755679	2L_16755679_SNP [dm3] 2L_16755679_SNP [dm6]	G	C	1.551e^-4	0.955	SPLICE_SITE_REGION yellow-b INTRON yellow-b
3R	17351511	3R_17351511_SNP [dm3] 3R_21525789_SNP [dm6]	T	C	1.554e^-4	0.955	INTRON CG7956	TF binding site mE1_TFBS_cad
2L	1009611	2L_1009611_DEL [dm3] 2L_1009611_DEL [dm6]	AGA	A	1.558e^-4	0.955	UTR_3_PRIME IA-2
2L	12760954	2L_12760954_SNP [dm3] 2L_12760954_SNP [dm6]	C	T	1.564e^-4	0.955	SYNONYMOUS_CODING CG15483
2L	930054	2L_930054_INS [dm3] 2L_930054_INS [dm6]	T	TT	1.567e^-4	0.955	INTRON CG4341
2L	4633197	2L_4633197_SNP [dm3] 2L_4633197_SNP [dm6]	G	T	1.578e^-4	0.955	DOWNSTREAM CR45452 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25348422	3R_25348422_SNP [dm3] 3R_29522700_SNP [dm6]	T	C	1.585e^-4	0.955	INTERGENIC
2L	2417770	2L_2417770_SNP [dm3] 2L_2417770_SNP [dm6]	T	A	1.590e^-4	0.955	DOWNSTREAM CG34447 INTRON CG34448
3L	13093408	3L_13093408_SNP [dm3] 3L_13100308_SNP [dm6]	A	T	1.597e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4306087	X_4306087_SNP [dm3] X_4412054_SNP [dm6]	A	T	1.606e^-4	0.955	UPSTREAM bi INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	2610896	X_2610896_SNP [dm3] X_2716863_SNP [dm6]	T	A	1.607e^-4	0.955	NON_SYNONYMOUS_CODING CG2694 DOWNSTREAM CG2701	TF binding site mE1_TFBS_chinmo
2L	16713989	2L_16713989_SNP [dm3] 2L_16713989_SNP [dm6]	C	T	1.621e^-4	0.955	INTRON CG31808
2R	6636801	2R_6636801_SNP [dm3] 2R_10749296_SNP [dm6]	A	C	1.645e^-4	0.955	INTRON CG33144
2R	14213599	2R_14213599_DEL [dm3] 2R_18326094_DEL [dm6]	CGAC	C	1.647e^-4	0.955	INTRON sbb
2R	16713378	2R_16713378_SNP [dm3] 2R_20825873_SNP [dm6]	G	A	1.652e^-4	0.955	INTRON insc	TF binding site mE1_TFBS_cad
2L	2322790	2L_2322790_SNP [dm3] 2L_2322790_SNP [dm6]	A	C	1.654e^-4	0.955	INTRON CG9967 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	10619199	3L_10619199_SNP [dm3] 3L_10626099_SNP [dm6]	G	A	1.656e^-4	0.955	UPSTREAM CG34238 & 1 other INTERGENIC
3R	12509164	3R_12509164_SNP [dm3] 3R_16683442_SNP [dm6]	T	C	1.657e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
X	10467721	X_10467721_SNP [dm3] X_10573688_SNP [dm6]	T	C	1.667e^-4	0.955	INTRON spri
2R	12238478	2R_12238478_SNP [dm3] 2R_16350973_SNP [dm6]	C	A	1.670e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9473260	2L_9473260_SNP [dm3] 2L_9473260_SNP [dm6]	T	G	1.671e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22034555	3R_22034555_SNP [dm3] 3R_26208833_SNP [dm6]	T	G	1.678e^-4	0.955	INTRON CR44320
3R	22954054	3R_22954054_SNP [dm3] 3R_27128332_SNP [dm6]	C	T	1.678e^-4	0.955	SYNONYMOUS_CODING CG6051	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6693324	2R_6693324_DEL [dm3] 2R_10805819_DEL [dm6]	TTTAAAAATTAAATTCAATC...	ATATAAGCCAT...	1.678e^-4	0.955	INTRON wde	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8691905	2R_8691905_SNP [dm3] 2R_12804400_SNP [dm6]	C	A	1.685e^-4	0.955	INTERGENIC
2L	10223418	2L_10223418_SNP [dm3] 2L_10223418_SNP [dm6]	A	G	1.691e^-4	0.955	SYNONYMOUS_CODING CG4908 DOWNSTREAM Prosalpha6	TF binding site mE1_TFBS_sens
2L	15896702	2L_15896702_SNP [dm3] 2L_15896702_SNP [dm6]	T	A	1.700e^-4	0.955	INTRON CG31735
2L	13545148	2L_13545148_DEL [dm3] 2L_13545148_DEL [dm6]	TT	T	1.704e^-4	0.955	INTRON B4
2L	3136405	2L_3136405_SNP [dm3] 2L_3136405_SNP [dm6]	A	T	1.707e^-4	0.955	INTRON toc
2R	15451568	2R_15451568_SNP [dm3] 2R_19564063_SNP [dm6]	T	A	1.717e^-4	0.955	DOWNSTREAM tRNA:CR33535 INTRON sm
X	14872923	X_14872923_SNP [dm3] X_14978890_SNP [dm6]	G	C	1.719e^-4	0.955	INTRON eag
X	8656611	X_8656611_SNP [dm3] X_8762578_SNP [dm6]	C	G	1.723e^-4	0.955	INTRON Lim1
2R	13595388	2R_13595388_SNP [dm3] 2R_17707883_SNP [dm6]	G	C	1.738e^-4	0.955	NON_SYNONYMOUS_CODING CG6424	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3898788	3L_3898788_SNP [dm3] 3L_3898788_SNP [dm6]	T	A	1.742e^-4	0.955	SYNONYMOUS_CODING Ccz1 DOWNSTREAM Ubi-p63E	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2322924	2L_2322924_SNP [dm3] 2L_2322924_SNP [dm6]	A	G	1.743e^-4	0.955	INTRON CG9967 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15874716	2R_15874716_SNP [dm3] 2R_19987211_SNP [dm6]	A	G	1.752e^-4	0.955	INTERGENIC
3R	18851262	3R_18851262_SNP [dm3] 3R_23025540_SNP [dm6]	A	G	1.758e^-4	0.955	SYNONYMOUS_CODING lmd UPSTREAM lmd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3136403	2L_3136403_SNP [dm3] 2L_3136403_SNP [dm6]	T	G	1.761e^-4	0.955	INTRON toc
3R	14342208	3R_14342208_SNP [dm3] 3R_18516486_SNP [dm6]	T	A	1.775e^-4	0.955	INTRON fru	TF binding site BDTNP1_TFBS_twi
3R	18883808	3R_18883808_SNP [dm3] 3R_23058086_SNP [dm6]	A	G	1.783e^-4	0.955	UPSTREAM CG17119 DOWNSTREAM sav INTRON CG17119	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11536472	3L_11536472_SNP [dm3] 3L_11543372_SNP [dm6]	C	T	1.785e^-4	0.955	INTRON Mob2
3R	12509231	3R_12509231_SNP [dm3] 3R_16683509_SNP [dm6]	G	A	1.790e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	2200838	2L_2200838_SNP [dm3] 2L_2200838_SNP [dm6]	C	A	1.793e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12164560	2L_12164560_SNP [dm3] 2L_12164560_SNP [dm6]	C	T	1.795e^-4	0.955	NON_SYNONYMOUS_CODING ZnT33D INTRON CG31760
3L	676943	3L_676943_SNP [dm3] 3L_676943_SNP [dm6]	G	T	1.796e^-4	0.955	DOWNSTREAM CG17129 INTERGENIC
3L	19449654	3L_19449654_SNP [dm3] 3L_19456554_SNP [dm6]	G	A	1.797e^-4	0.955	DOWNSTREAM CR45434 INTERGENIC
2R	15066184	2R_15066184_SNP [dm3] 2R_19178679_SNP [dm6]	C	G	1.800e^-4	0.955	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12651889	3L_12651889_SNP [dm3] 3L_12658789_SNP [dm6]	A	T	1.802e^-4	0.955	UPSTREAM CR44553 INTERGENIC
2L	7788130	2L_7788130_SNP [dm3] 2L_7788130_SNP [dm6]	A	T	1.803e^-4	0.955	INTRON CG7149
2L	2815957	2L_2815957_SNP [dm3] 2L_2815957_SNP [dm6]	G	A	1.806e^-4	0.955	UPSTREAM CG15400 DOWNSTREAM Duox INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25669093	3R_25669093_SNP [dm3] 3R_29843371_SNP [dm6]	G	A	1.809e^-4	0.955	INTRON Cad99C
2L	2770087	2L_2770087_SNP [dm3] 2L_2770087_SNP [dm6]	C	T	1.812e^-4	0.955	UPSTREAM CG2862 & 1 other DOWNSTREAM CG15399 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	26760792	3R_26760792_SNP [dm3] 3R_30935070_SNP [dm6]	C	A	1.814e^-4	0.955	DOWNSTREAM CG15549 INTERGENIC
2L	4043127	2L_4043127_SNP [dm3] 2L_4043127_SNP [dm6]	C	T	1.830e^-4	0.955	INTRON ed	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12053983	2R_12053983_SNP [dm3] 2R_16166478_SNP [dm6]	A	G	1.835e^-4	0.955	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21909142	2L_21909142_SNP [dm3] 2L_21909142_SNP [dm6]	T	A	1.846e^-4	0.955	DOWNSTREAM CG1428 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20112535	3R_20112535_SNP [dm3] 3R_24286813_SNP [dm6]	C	T	1.848e^-4	0.955	SYNONYMOUS_CODING CG6356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14051892	3R_14051892_DEL [dm3] 3R_18226170_DEL [dm6]	TGCTGCATC	T	1.852e^-4	0.955	UPSTREAM Mdh2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	9439977	2L_9439977_SNP [dm3] 2L_9439977_SNP [dm6]	T	G	1.864e^-4	0.955	DOWNSTREAM CG33723 INTRON numb
X	22142747	X_22142747_SNP [dm3] X_22740911_SNP [dm6]	A	G	1.866e^-4	0.955	INTRON CR44997
2L	3544695	2L_3544695_SNP [dm3] 2L_3544695_SNP [dm6]	A	T	1.867e^-4	0.955	INTRON drm
X	7962690	X_7962690_SNP [dm3] X_8068657_SNP [dm6]	C	T	1.877e^-4	0.955	SYNONYMOUS_CODING mys	TF binding site mE1_TFBS_cad
3L	1514433	3L_1514433_SNP [dm3] 3L_1514433_SNP [dm6]	A	C	1.889e^-4	0.955	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26114762	3R_26114762_INS [dm3] 3R_30289040_INS [dm6]	C	CTTAGGCTTC	1.889e^-4	0.955	INTRON hdc
2R	11340101	2R_11340101_SNP [dm3] 2R_15452596_SNP [dm6]	A	G	1.891e^-4	0.955	INTRON CG43729
2R	19685748	2R_19685748_DEL [dm3] 2R_23798225_DEL [dm6]	AT	A	1.893e^-4	0.955	UTR_5_PRIME CG9850	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	20112527	3R_20112527_SNP [dm3] 3R_24286805_SNP [dm6]	T	A	1.906e^-4	0.955	NON_SYNONYMOUS_CODING CG6356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17056774	2R_17056774_SNP [dm3] 2R_21169269_SNP [dm6]	G	A	1.909e^-4	0.955	SYNONYMOUS_CODING hng1 UPSTREAM CG4266 DOWNSTREAM LSm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13093407	3L_13093407_SNP [dm3] 3L_13100307_SNP [dm6]	C	T	1.911e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22635985	3R_22635985_SNP [dm3] 3R_26810263_SNP [dm6]	G	T	1.912e^-4	0.955	INTRON Tl
3R	18642852	3R_18642852_SNP [dm3] 3R_22817130_SNP [dm6]	G	A	1.913e^-4	0.955	UPSTREAM CG13840 INTERGENIC
3R	6547375	3R_6547375_SNP [dm3] 3R_10721653_SNP [dm6]	T	A	1.916e^-4	0.955	INTERGENIC
2R	17763193	2R_17763193_DEL [dm3] 2R_21875688_DEL [dm6]	GG	G	1.918e^-4	0.955	INTRON Fili
2L	16813019	2L_16813019_SNP [dm3] 2L_16813019_SNP [dm6]	G	T	1.920e^-4	0.955	INTRON CG13280 & 1 other
2L	16815764	2L_16815764_SNP [dm3] 2L_16815764_SNP [dm6]	G	A	1.920e^-4	0.955	NON_SYNONYMOUS_CODING CG13272 UPSTREAM mdy INTRON CG13280	TF binding site mE1_TFBS_bab1 mE1_TFBS_Kr mE1_TFBS_sens
3R	26757743	3R_26757743_SNP [dm3] 3R_30932021_SNP [dm6]	A	T	1.921e^-4	0.955	INTERGENIC
3L	2072315	3L_2072315_SNP [dm3] 3L_2072315_SNP [dm6]	A	T	1.922e^-4	0.955	NON_SYNONYMOUS_CODING sls INTRON sls
2L	7788173	2L_7788173_SNP [dm3] 2L_7788173_SNP [dm6]	A	G	1.923e^-4	0.955	SYNONYMOUS_CODING CG7149
3R	12509119	3R_12509119_SNP [dm3] 3R_16683397_SNP [dm6]	G	C	1.925e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	11470116	3R_11470116_SNP [dm3] 3R_15644394_SNP [dm6]	G	A	1.931e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3R	13714710	3R_13714710_SNP [dm3] 3R_17888988_SNP [dm6]	C	T	1.934e^-4	0.955	INTRON Rim
X	13337106	X_13337106_SNP [dm3] X_13443073_SNP [dm6]	C	A	1.939e^-4	0.955	INTERGENIC
2R	9907887	2R_9907887_SNP [dm3] 2R_14020382_SNP [dm6]	T	G	1.941e^-4	0.955	INTRON mam
2R	9915187	2R_9915187_SNP [dm3] 2R_14027682_SNP [dm6]	G	T	1.944e^-4	0.955	UPSTREAM CG18371 INTRON mam
3L	4603165	3L_4603165_SNP [dm3] 3L_4603165_SNP [dm6]	G	A	1.946e^-4	0.955	INTRON Src64B
2R	9907829	2R_9907829_SNP [dm3] 2R_14020324_SNP [dm6]	G	C	1.948e^-4	0.955	INTRON mam
2L	2195453	2L_2195453_SNP [dm3] 2L_2195453_SNP [dm6]	C	A	1.948e^-4	0.955	INTRON CG34172	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	9261492	2R_9261492_SNP [dm3] 2R_13373987_SNP [dm6]	A	T	1.952e^-4	0.955	INTERGENIC
3L	1514448	3L_1514448_SNP [dm3] 3L_1514448_SNP [dm6]	A	G	1.952e^-4	0.955	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	2195446	2L_2195446_SNP [dm3] 2L_2195446_SNP [dm6]	A	T	1.955e^-4	0.955	INTRON CG34172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	7611672	2L_7611672_SNP [dm3] 2L_7611672_SNP [dm6]	C	A	1.964e^-4	0.955	INTRON CG6739	TF binding site BDTNP1_TFBS_twi
2R	6954333	2R_6954333_SNP [dm3] 2R_11066828_SNP [dm6]	G	A	1.976e^-4	0.955	INTRON luna
3L	19179249	3L_19179249_SNP [dm3] 3L_19186149_SNP [dm6]	A	G	1.978e^-4	0.955	INTRON fz2
3L	3751227	3L_3751227_SNP [dm3] 3L_3751227_SNP [dm6]	C	G	1.979e^-4	0.955	INTRON CG32264
X	9009755	X_9009755_SNP [dm3] X_9115722_SNP [dm6]	C	T	1.985e^-4	0.955	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl
2L	4279046	2L_4279046_MNP [dm3] 2L_4279046_MNP [dm6]	AAA	TGG	1.989e^-4	0.955	INTRON Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4315317	X_4315317_SNP [dm3] X_4421284_SNP [dm6]	T	C	2.001e^-4	0.955	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	21609975	3R_21609975_SNP [dm3] 3R_25784253_SNP [dm6]	G	C	2.006e^-4	0.955	INTERGENIC
3L	19173443	3L_19173443_SNP [dm3] 3L_19180343_SNP [dm6]	A	C	2.007e^-4	0.955	INTRON fz2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2707657	3L_2707657_SNP [dm3] 3L_2707657_SNP [dm6]	G	A	2.009e^-4	0.955	INTRON Fife
X	6112581	X_6112581_SNP [dm3] X_6218548_SNP [dm6]	G	A	2.013e^-4	0.955	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6112584	X_6112584_SNP [dm3] X_6218551_SNP [dm6]	A	G	2.013e^-4	0.955	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6112587	X_6112587_SNP [dm3] X_6218554_SNP [dm6]	A	G	2.013e^-4	0.955	SYNONYMOUS_CODING Btd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18566740	3L_18566740_DEL [dm3] 3L_18573640_DEL [dm6]	TT	T	2.015e^-4	0.955	INTRON AstC-R1
2L	15200263	2L_15200263_SNP [dm3] 2L_15200263_SNP [dm6]	G	T	2.015e^-4	0.955	UTR_5_PRIME CG4168
3L	7462892	3L_7462892_SNP [dm3] 3L_7469792_SNP [dm6]	A	G	2.030e^-4	0.955	SYNONYMOUS_CODING CG8543 DOWNSTREAM Tsp66A & 2 others
2R	10860126	2R_10860126_SNP [dm3] 2R_14972621_SNP [dm6]	T	C	2.033e^-4	0.955	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15960520	2L_15960520_SNP [dm3] 2L_15960520_SNP [dm6]	T	A	2.046e^-4	0.955	INTRON beat-Ib & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3006443	X_3006443_SNP [dm3] X_3112410_SNP [dm6]	C	G	2.050e^-4	0.955	INTRON kirre
3L	10148632	3L_10148632_DEL [dm3] 3L_10155532_DEL [dm6]	TT	T	2.053e^-4	0.955	INTRON dpr10
2L	19051231	2L_19051231_SNP [dm3] 2L_19051231_SNP [dm6]	C	G	2.062e^-4	0.955	NON_SYNONYMOUS_CODING l_2_37Bb UPSTREAM Rpn3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8197654	3L_8197654_SNP [dm3] 3L_8204554_SNP [dm6]	T	A	2.066e^-4	0.955	INTERGENIC
3R	26115489	3R_26115489_DEL [dm3] 3R_30289767_DEL [dm6]	GCAGCAGGGTGAG...	G	2.069e^-4	0.955	INTRON hdc
2L	12656773	2L_12656773_SNP [dm3] 2L_12656773_SNP [dm6]	T	A	2.070e^-4	0.955	UPSTREAM pdm2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	402078	2L_402078_SNP [dm3] 2L_402078_SNP [dm6]	C	G	2.085e^-4	0.955	UTR_5_PRIME CG4213 UPSTREAM CG4213	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	483477	2L_483477_SNP [dm3] 2L_483477_SNP [dm6]	T	C	2.085e^-4	0.955	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	4279138	2L_4279138_SNP [dm3] 2L_4279138_SNP [dm6]	G	T	2.090e^-4	0.955	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20226418	2R_20226418_SNP [dm3] 2R_24338895_SNP [dm6]	C	T	2.092e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16722878	2L_16722878_SNP [dm3] 2L_16722878_SNP [dm6]	G	T	2.094e^-4	0.955	DOWNSTREAM VhaSFD & 1 other INTERGENIC
2L	19024938	2L_19024938_SNP [dm3] 2L_19024938_SNP [dm6]	G	A	2.099e^-4	0.955	UPSTREAM CR43700 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8892172	2R_8892172_SNP [dm3] 2R_13004667_SNP [dm6]	C	G	2.102e^-4	0.955	INTRON Su_z_2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12512549	3R_12512549_DEL [dm3] 3R_16686827_DEL [dm6]	GT	G	2.108e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	2380847	2R_2380847_SNP [dm3] 2R_6493342_SNP [dm6]	G	A	2.113e^-4	0.955	INTERGENIC
X	10467712	X_10467712_INS [dm3] X_10573679_INS [dm6]	T	TT	2.115e^-4	0.955	INTRON spri
2L	483515	2L_483515_SNP [dm3] 2L_483515_SNP [dm6]	G	A	2.126e^-4	0.955	INTRON ush	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	18529117	2L_18529117_SNP [dm3] 2L_18529117_SNP [dm6]	C	T	2.133e^-4	0.955	INTRON CG10211	TF binding site mE1_TFBS_cad
2L	18529136	2L_18529136_SNP [dm3] 2L_18529136_SNP [dm6]	C	A	2.133e^-4	0.955	SYNONYMOUS_CODING CG10211	TF binding site mE1_TFBS_cad
2L	1078137	2L_1078137_SNP [dm3] 2L_1078137_SNP [dm6]	T	C	2.144e^-4	0.955	SYNONYMOUS_CODING ast UPSTREAM S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_sens
3R	18532211	3R_18532211_SNP [dm3] 3R_22706489_SNP [dm6]	A	G	2.146e^-4	0.955	SYNONYMOUS_CODING CG13842
3R	10515245	3R_10515245_DEL [dm3] 3R_14689523_DEL [dm6]	AT	A	2.146e^-4	0.955	INTRON Meltrin
X	20396652	X_20396652_SNP [dm3] X_20525625_SNP [dm6]	A	G	2.149e^-4	0.955	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1
X	2396958	X_2396958_SNP [dm3] X_2502925_SNP [dm6]	A	C	2.171e^-4	0.955	INTRON trol
2L	9439980	2L_9439980_SNP [dm3] 2L_9439980_SNP [dm6]	T	C	2.176e^-4	0.955	DOWNSTREAM CG33723 INTRON numb
2L	12499688	2L_12499688_SNP [dm3] 2L_12499688_SNP [dm6]	C	A	2.177e^-4	0.955	INTRON bun
3L	11545374	3L_11545374_SNP [dm3] 3L_11552274_SNP [dm6]	G	A	2.180e^-4	0.955	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2R	9915190	2R_9915190_SNP [dm3] 2R_14027685_SNP [dm6]	G	A	2.194e^-4	0.955	UPSTREAM CG18371 INTRON mam
3L	15790670	3L_15790670_SNP [dm3] 3L_15797570_SNP [dm6]	T	G	2.199e^-4	0.955	INTERGENIC
2L	1318215	2L_1318215_SNP [dm3] 2L_1318215_SNP [dm6]	C	T	2.202e^-4	0.955	INTERGENIC
2L	1318220	2L_1318220_SNP [dm3] 2L_1318220_SNP [dm6]	C	T	2.202e^-4	0.955	INTERGENIC
2L	1352680	2L_1352680_SNP [dm3] 2L_1352680_SNP [dm6]	G	C	2.204e^-4	0.955	DOWNSTREAM CG5561 INTRON CG5556
2L	12499686	2L_12499686_SNP [dm3] 2L_12499686_SNP [dm6]	A	T	2.217e^-4	0.955	INTRON bun
2L	1009573	2L_1009573_SNP [dm3] 2L_1009573_SNP [dm6]	C	A	2.224e^-4	0.955	UTR_3_PRIME IA-2
2R	16957783	2R_16957783_SNP [dm3] 2R_21070278_SNP [dm6]	A	T	2.225e^-4	0.955	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
2L	970810	2L_970810_SNP [dm3] 2L_970810_SNP [dm6]	C	T	2.239e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12514784	3R_12514784_SNP [dm3] 3R_16689062_SNP [dm6]	G	A	2.243e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10467728	X_10467728_INS [dm3] X_10573695_INS [dm6]	T	TGTATTAT	2.247e^-4	0.955	INTRON spri
2R	12713993	2R_12713993_SNP [dm3] 2R_16826488_SNP [dm6]	C	T	2.248e^-4	0.955	SYNONYMOUS_CODING CG34459 UPSTREAM CG34460	TF binding site mE1_TFBS_chinmo
2L	6067735	2L_6067735_SNP [dm3] 2L_6067735_SNP [dm6]	T	C	2.254e^-4	0.955	UTR_3_PRIME CG9150 DOWNSTREAM CG9147	TF binding site mE1_TFBS_inv
3R	22641373	3R_22641373_SNP [dm3] 3R_26815651_SNP [dm6]	G	A	2.265e^-4	0.955	INTRON Tl
3R	22642783	3R_22642783_SNP [dm3] 3R_26817061_SNP [dm6]	C	T	2.265e^-4	0.955	INTRON Tl
3R	25648007	3R_25648007_SNP [dm3] 3R_29822285_SNP [dm6]	G	A	2.268e^-4	0.955	INTRON neo
2L	7456424	2L_7456424_SNP [dm3] 2L_7456424_SNP [dm6]	T	G	2.270e^-4	0.955	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15965887	2L_15965887_SNP [dm3] 2L_15965887_SNP [dm6]	A	C	2.278e^-4	0.955	INTERGENIC
3R	23550954	3R_23550954_SNP [dm3] 3R_27725232_SNP [dm6]	A	C	2.280e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1318143	2L_1318143_SNP [dm3] 2L_1318143_SNP [dm6]	G	A	2.290e^-4	0.955	INTERGENIC
2L	1318180	2L_1318180_SNP [dm3] 2L_1318180_SNP [dm6]	A	G	2.290e^-4	0.955	INTERGENIC
3R	10637515	3R_10637515_SNP [dm3] 3R_14811793_SNP [dm6]	G	T	2.301e^-4	0.955	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_inv
3L	22309943	3L_22309943_SNP [dm3] 3L_22316843_SNP [dm6]	C	A	2.312e^-4	0.955	INTRON Ten-m
3L	9304382	3L_9304382_DEL [dm3] 3L_9311282_DEL [dm6]	ATATACATTGT...	A	2.345e^-4	0.955	INTERGENIC
2L	2979696	2L_2979696_DEL [dm3] 2L_2979696_DEL [dm6]	CTTACAAT	C	2.352e^-4	0.955	UTR_3_PRIME Chd1 UPSTREAM CG9643 DOWNSTREAM Chd1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11740069	2R_11740069_SNP [dm3] 2R_15852564_SNP [dm6]	C	G	2.354e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740072	2R_11740072_SNP [dm3] 2R_15852567_SNP [dm6]	C	T	2.354e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740074	2R_11740074_SNP [dm3] 2R_15852569_SNP [dm6]	A	G	2.354e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740081	2R_11740081_DEL [dm3] 2R_15852576_DEL [dm6]	GAA	T	2.354e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740085	2R_11740085_SNP [dm3] 2R_15852580_SNP [dm6]	A	T	2.354e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740089	2R_11740089_INS [dm3] 2R_15852584_INS [dm6]	AC	TTA	2.354e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740096	2R_11740096_SNP [dm3] 2R_15852591_SNP [dm6]	T	C	2.354e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740097	2R_11740097_DEL [dm3] 2R_15852592_DEL [dm6]	ATTAGAAAGTT...	A	2.354e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740118	2R_11740118_SNP [dm3] 2R_15852613_SNP [dm6]	C	G	2.354e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740125	2R_11740125_SNP [dm3] 2R_15852620_SNP [dm6]	A	G	2.354e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19250941	3L_19250941_SNP [dm3] 3L_19257841_SNP [dm6]	A	T	2.358e^-4	0.955	UTR_3_PRIME nes DOWNSTREAM nes & 1 other
2R	16858819	2R_16858819_SNP [dm3] 2R_20971314_SNP [dm6]	G	T	2.395e^-4	0.955	INTERGENIC
X	15390031	X_15390031_SNP [dm3] X_15495998_SNP [dm6]	G	T	2.399e^-4	0.955	INTRON Gmap	TF binding site BDTNP1_TFBS_dl
2R	18972454	2R_18972454_SNP [dm3] 2R_23084931_SNP [dm6]	G	A	2.401e^-4	0.955	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18972461	2R_18972461_SNP [dm3] 2R_23084938_SNP [dm6]	A	G	2.401e^-4	0.955	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	6040768	X_6040768_SNP [dm3] X_6146735_SNP [dm6]	G	C	2.404e^-4	0.955	INTRON Ca-alpha1T
3L	3406916	3L_3406916_SNP [dm3] 3L_3406916_SNP [dm6]	G	T	2.411e^-4	0.955	INTRON sty
3R	12512546	3R_12512546_SNP [dm3] 3R_16686824_SNP [dm6]	T	A	2.412e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11548252	3L_11548252_SNP [dm3] 3L_11555152_SNP [dm6]	A	G	2.424e^-4	0.955	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5611511	2L_5611511_SNP [dm3] 2L_5611511_SNP [dm6]	G	T	2.432e^-4	0.955	INTRON CG14010
2L	1078139	2L_1078139_SNP [dm3] 2L_1078139_SNP [dm6]	G	C	2.437e^-4	0.955	NON_SYNONYMOUS_CODING ast UPSTREAM S	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_sens
2L	7287492	2L_7287492_SNP [dm3] 2L_7287492_SNP [dm6]	G	A	2.445e^-4	0.955	INTERGENIC
2L	15962305	2L_15962305_SNP [dm3] 2L_15962305_SNP [dm6]	G	T	2.449e^-4	0.955	UTR_5_PRIME beat-Ib
X	4704578	X_4704578_INS [dm3] X_4810545_INS [dm6]	C	CGCCGAGC	2.454e^-4	0.955	INTERGENIC
X	7628580	X_7628580_SNP [dm3] X_7734547_SNP [dm6]	T	A	2.463e^-4	0.955	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	589230	2L_589230_SNP [dm3] 2L_589230_SNP [dm6]	C	T	2.475e^-4	0.955	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
3R	14594943	3R_14594943_SNP [dm3] 3R_18769221_SNP [dm6]	G	C	2.476e^-4	0.955	INTRON CG7720	TF binding site mE1_TFBS_chinmo
3L	18424428	3L_18424428_SNP [dm3] 3L_18431328_SNP [dm6]	T	C	2.477e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12253281	3R_12253281_SNP [dm3] 3R_16427559_SNP [dm6]	T	G	2.479e^-4	0.955	UPSTREAM CR45631 INTERGENIC	regulatory region REDfly_CRMs
2L	9309196	2L_9309196_SNP [dm3] 2L_9309196_SNP [dm6]	A	G	2.488e^-4	0.955	INTERGENIC
2R	1410552	2R_1410552_SNP [dm3] 2R_5523047_SNP [dm6]	A	G	2.505e^-4	0.955	INTRON CG30438	transposable element FlyBase
3L	15787656	3L_15787656_SNP [dm3] 3L_15794556_SNP [dm6]	C	G	2.514e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19676350	3L_19676350_SNP [dm3] 3L_19683250_SNP [dm6]	A	T	2.516e^-4	0.955	DOWNSTREAM CG8765 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20313105	3R_20313105_SNP [dm3] 3R_24487383_SNP [dm6]	A	G	2.517e^-4	0.955	INTRON nAChRalpha2
X	15448180	X_15448180_SNP [dm3] X_15554147_SNP [dm6]	G	T	2.521e^-4	0.955	UTR_5_PRIME Ac13E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	16721354	2L_16721354_SNP [dm3] 2L_16721354_SNP [dm6]	C	T	2.527e^-4	0.955	UPSTREAM Cyt-c-p INTRON Cyt-c-p	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15470569	2R_15470569_SNP [dm3] 2R_19583064_SNP [dm6]	T	A	2.537e^-4	0.955	INTRON sm
2L	3128741	2L_3128741_SNP [dm3] 2L_3128741_SNP [dm6]	G	A	2.542e^-4	0.955	UTR_5_PRIME CG15403 INTRON toc
2L	371327	2L_371327_SNP [dm3] 2L_371327_SNP [dm6]	C	T	2.545e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	11548947	3L_11548947_SNP [dm3] 3L_11555847_SNP [dm6]	C	T	2.554e^-4	0.955	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2R	17002852	2R_17002852_SNP [dm3] 2R_21115347_SNP [dm6]	A	T	2.554e^-4	0.955	INTRON ktub
X	3431278	X_3431278_SNP [dm3] X_3537245_SNP [dm6]	C	A	2.554e^-4	0.955	INTRON CG32791
2R	16988162	2R_16988162_SNP [dm3] 2R_21100657_SNP [dm6]	C	T	2.562e^-4	0.955	SYNONYMOUS_CODING CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
2R	17056807	2R_17056807_SNP [dm3] 2R_21169302_SNP [dm6]	A	G	2.566e^-4	0.955	SYNONYMOUS_CODING hng1 UPSTREAM CG4266 DOWNSTREAM LSm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15791321	3L_15791321_SNP [dm3] 3L_15798221_SNP [dm6]	G	T	2.567e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	3895611	3L_3895611_SNP [dm3] 3L_3895611_SNP [dm6]	T	C	2.573e^-4	0.955	SYNONYMOUS_CODING Gr63a DOWNSTREAM Fie	TF binding site mE1_TFBS_sens
2R	17293581	2R_17293581_DEL [dm3] 2R_21406076_DEL [dm6]	TTGACAAGCGTTTCAAT...	T	2.582e^-4	0.955	INTRON Sdc
2L	16339296	2L_16339296_SNP [dm3] 2L_16339296_SNP [dm6]	G	A	2.596e^-4	0.955	INTRON CG42266
2L	16339303	2L_16339303_SNP [dm3] 2L_16339303_SNP [dm6]	C	T	2.596e^-4	0.955	INTRON CG42266
2L	560812	2L_560812_SNP [dm3] 2L_560812_SNP [dm6]	G	A	2.602e^-4	0.955	SYNONYMOUS_CODING CG11835 UPSTREAM rempA DOWNSTREAM CG2789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2884181	X_2884181_SNP [dm3] X_2990148_SNP [dm6]	A	G	2.604e^-4	0.955	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z
2R	9903273	2R_9903273_DEL [dm3] 2R_14015768_DEL [dm6]	TT	T	2.605e^-4	0.955	INTRON mam
2L	7458200	2L_7458200_SNP [dm3] 2L_7458200_SNP [dm6]	G	A	2.606e^-4	0.955	SYNONYMOUS_CODING Gr28b UPSTREAM Gr28b INTRON Gr28b
3R	12331596	3R_12331596_SNP [dm3] 3R_16505874_SNP [dm6]	G	A	2.613e^-4	0.955	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	863195	3R_863195_SNP [dm3] 3R_5037473_SNP [dm6]	A	G	2.617e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10405199	2L_10405199_DEL [dm3] 2L_10405199_DEL [dm6]	TGAGTTATTTTGATAT...	T	2.620e^-4	0.955	UTR_5_PRIME CG17768 & 1 other UPSTREAM Ir31a & 2 others INTRAGENIC CG17768 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7641993	2L_7641993_SNP [dm3] 2L_7641993_SNP [dm6]	C	T	2.633e^-4	0.955	DOWNSTREAM Slob INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_zfh1
2L	2205109	2L_2205109_SNP [dm3] 2L_2205109_SNP [dm6]	C	T	2.648e^-4	0.955	INTRON CG31668	TF binding site mE1_TFBS_cad
2R	11740078	2R_11740078_SNP [dm3] 2R_15852573_SNP [dm6]	T	G	2.652e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13616152	2L_13616152_SNP [dm3] 2L_13616152_SNP [dm6]	A	G	2.660e^-4	0.955	INTRON kuz
2L	3130654	2L_3130654_SNP [dm3] 2L_3130654_SNP [dm6]	G	A	2.673e^-4	0.955	INTRON toc
3L	18425100	3L_18425100_SNP [dm3] 3L_18432000_SNP [dm6]	C	T	2.683e^-4	0.955	INTERGENIC
2R	12314081	2R_12314081_SNP [dm3] 2R_16426576_SNP [dm6]	G	A	2.684e^-4	0.955	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12314396	2R_12314396_SNP [dm3] 2R_16426891_SNP [dm6]	C	A	2.684e^-4	0.955	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11008128	3R_11008128_SNP [dm3] 3R_15182406_SNP [dm6]	T	G	2.697e^-4	0.955	UPSTREAM Mf INTRON Gyc88E
3L	12816240	3L_12816240_SNP [dm3] 3L_12823140_SNP [dm6]	C	A	2.700e^-4	0.955	NON_SYNONYMOUS_CODING CG42588
X	21495207	X_21495207_SNP [dm3] X_21624180_SNP [dm6]	A	G	2.716e^-4	0.955	UPSTREAM CG32500 DOWNSTREAM DIP1 INTERGENIC	transposable element FlyBase
2R	16957773	2R_16957773_SNP [dm3] 2R_21070268_SNP [dm6]	A	G	2.728e^-4	0.955	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
3L	9019800	3L_9019800_SNP [dm3] 3L_9026700_SNP [dm6]	A	T	2.736e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15980711	3L_15980711_SNP [dm3] 3L_15987611_SNP [dm6]	G	A	2.742e^-4	0.955	UPSTREAM CR45446 & 1 other INTRON DNApol-delta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
2L	21793185	2L_21793185_SNP [dm3] 2L_21793185_SNP [dm6]	T	C	2.743e^-4	0.955	INTRON CG31612	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16644901	2L_16644901_SNP [dm3] 2L_16644901_SNP [dm6]	T	G	2.750e^-4	0.955	INTRON CG42389
2L	16820654	2L_16820654_SNP [dm3] 2L_16820654_SNP [dm6]	C	T	2.755e^-4	0.955	SYNONYMOUS_CODING mdy DOWNSTREAM Cas INTRON CG13280
2L	18095870	2L_18095870_SNP [dm3] 2L_18095870_SNP [dm6]	C	G	2.756e^-4	0.955	UPSTREAM CG5755 INTERGENIC
3L	20016663	3L_20016663_SNP [dm3] 3L_20023563_SNP [dm6]	A	G	2.756e^-4	0.955	SYNONYMOUS_CODING kug
3R	6753044	3R_6753044_SNP [dm3] 3R_10927322_SNP [dm6]	T	C	2.767e^-4	0.955	INTERGENIC
3L	10915007	3L_10915007_SNP [dm3] 3L_10921907_SNP [dm6]	G	A	2.768e^-4	0.955	INTERGENIC
2L	16005727	2L_16005727_SNP [dm3] 2L_16005727_SNP [dm6]	A	T	2.773e^-4	0.955	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
2L	16740167	2L_16740167_SNP [dm3] 2L_16740167_SNP [dm6]	G	A	2.777e^-4	0.955	INTRON ChLD3
3R	14694014	3R_14694014_SNP [dm3] 3R_18868292_SNP [dm6]	G	T	2.779e^-4	0.955	INTERGENIC
X	15538084	X_15538084_SNP [dm3] X_15644051_SNP [dm6]	A	C	2.795e^-4	0.955	UPSTREAM CG8117 INTERGENIC
2L	7926827	2L_7926827_SNP [dm3] 2L_7926827_SNP [dm6]	C	T	2.795e^-4	0.955	INTRON Snoo
3L	7368238	3L_7368238_SNP [dm3] 3L_7375138_SNP [dm6]	G	C	2.802e^-4	0.955	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	13380441	2R_13380441_SNP [dm3] 2R_17492936_SNP [dm6]	A	G	2.805e^-4	0.955	NON_SYNONYMOUS_CODING NT5E-2 UPSTREAM CG30103	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3L	16523053	3L_16523053_SNP [dm3] 3L_16529953_SNP [dm6]	A	T	2.806e^-4	0.955	INTRON CG43373
2L	16334161	2L_16334161_SNP [dm3] 2L_16334161_SNP [dm6]	T	A	2.815e^-4	0.955	NON_SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7365205	3L_7365205_SNP [dm3] 3L_7372105_SNP [dm6]	C	T	2.818e^-4	0.955	INTRON akirin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18537480	3L_18537480_SNP [dm3] 3L_18544380_SNP [dm6]	A	G	2.818e^-4	0.955	INTERGENIC
2L	13566963	2L_13566963_DEL [dm3] 2L_13566963_DEL [dm6]	TTCCTGAAAAGCGTGCT...	T	2.820e^-4	0.955	INTRON kuz
2L	2189254	2L_2189254_SNP [dm3] 2L_2189254_SNP [dm6]	A	C	2.832e^-4	0.955	UPSTREAM CR44065 DOWNSTREAM CG10874 INTRON CR45290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2670302	2L_2670302_SNP [dm3] 2L_2670302_SNP [dm6]	A	G	2.837e^-4	0.955	SYNONYMOUS_CODING Gr23a UPSTREAM Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	2670314	2L_2670314_SNP [dm3] 2L_2670314_SNP [dm6]	C	A	2.837e^-4	0.955	SYNONYMOUS_CODING Gr23a UPSTREAM Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	3845218	2R_3845218_SNP [dm3] 2R_7957713_SNP [dm6]	C	T	2.839e^-4	0.955	SPLICE_SITE_REGION CG2906 SYNONYMOUS_CODING CG2906 DOWNSTREAM CG2915	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	25654903	3R_25654903_SNP [dm3] 3R_29829181_SNP [dm6]	A	G	2.851e^-4	0.955	INTRON Atg16	enhancer mE1_CBP_Enhancers
2L	2198316	2L_2198316_SNP [dm3] 2L_2198316_SNP [dm6]	T	C	2.856e^-4	0.955	UPSTREAM CG34172 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	2316376	2L_2316376_SNP [dm3] 2L_2316376_SNP [dm6]	C	T	2.857e^-4	0.955	INTRON CG9967 & 1 other
2L	796255	2L_796255_SNP [dm3] 2L_796255_SNP [dm6]	G	C	2.862e^-4	0.955	INTERGENIC
2L	12828486	2L_12828486_SNP [dm3] 2L_12828486_SNP [dm6]	C	T	2.866e^-4	0.955	INTERGENIC
3L	16000630	3L_16000630_SNP [dm3] 3L_16007530_SNP [dm6]	G	C	2.875e^-4	0.955	SYNONYMOUS_CODING mib1 DOWNSTREAM mRpS31	TF binding site mE1_TFBS_cad
3L	16000663	3L_16000663_SNP [dm3] 3L_16007563_SNP [dm6]	A	G	2.875e^-4	0.955	SYNONYMOUS_CODING mib1 DOWNSTREAM mRpS31	TF binding site mE1_TFBS_cad
3R	21674514	3R_21674514_SNP [dm3] 3R_25848792_SNP [dm6]	G	A	2.892e^-4	0.955	DOWNSTREAM CR45657 INTERGENIC
X	15181963	X_15181963_SNP [dm3] X_15287930_SNP [dm6]	G	T	2.892e^-4	0.955	INTERGENIC
2L	1419814	2L_1419814_SNP [dm3] 2L_1419814_SNP [dm6]	A	T	2.907e^-4	0.955	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	11220269	2L_11220269_DEL [dm3] 2L_11220269_DEL [dm6]	TT	T	2.918e^-4	0.955	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18096847	2L_18096847_SNP [dm3] 2L_18096847_SNP [dm6]	C	T	2.922e^-4	0.955	SYNONYMOUS_CODING CG5755
3L	10619185	3L_10619185_SNP [dm3] 3L_10626085_SNP [dm6]	A	G	2.925e^-4	0.955	UPSTREAM CG34238 & 1 other INTERGENIC
2L	560607	2L_560607_SNP [dm3] 2L_560607_SNP [dm6]	A	G	2.927e^-4	0.955	UTR_3_PRIME CG11835 UPSTREAM rempA DOWNSTREAM CG2789
2L	1232262	2L_1232262_SNP [dm3] 2L_1232262_SNP [dm6]	C	T	2.933e^-4	0.955	INTERGENIC
X	669062	X_669062_SNP [dm3] X_775029_SNP [dm6]	C	G	2.937e^-4	0.955	INTRON fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	3173585	2R_3173585_SNP [dm3] 2R_7286080_SNP [dm6]	C	T	2.947e^-4	0.955	INTRON pwn
2R	3173587	2R_3173587_SNP [dm3] 2R_7286082_SNP [dm6]	C	G	2.947e^-4	0.955	INTRON pwn
2R	12314774	2R_12314774_DEL [dm3] 2R_16427269_DEL [dm6]	AAGTTTCAACACTA...	A	2.949e^-4	0.955	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	796229	2L_796229_SNP [dm3] 2L_796229_SNP [dm6]	C	A	2.950e^-4	0.955	INTERGENIC
2L	1318198	2L_1318198_SNP [dm3] 2L_1318198_SNP [dm6]	T	C	2.956e^-4	0.955	INTERGENIC
2R	14885307	2R_14885307_SNP [dm3] 2R_18997802_SNP [dm6]	C	T	2.969e^-4	0.955	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16609592	2L_16609592_SNP [dm3] 2L_16609592_SNP [dm6]	T	C	2.972e^-4	0.955	SYNONYMOUS_CODING CG4631 INTRON CG42389
3L	22308189	3L_22308189_DEL [dm3] 3L_22315089_DEL [dm6]	TCTCATAAA	T	2.974e^-4	0.955	INTRON Ten-m
X	8725191	X_8725191_INS [dm3] X_8831158_INS [dm6]	A	ATGGA	2.979e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17352744	3R_17352744_SNP [dm3] 3R_21527022_SNP [dm6]	T	C	2.981e^-4	0.955	UTR_3_PRIME CG7956 INTRON CG7956	TF binding site mE1_TFBS_cad
3L	19029101	3L_19029101_SNP [dm3] 3L_19036001_SNP [dm6]	C	A	2.982e^-4	0.955	INTRON nkd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9589146	2R_9589146_SNP [dm3] 2R_13701641_SNP [dm6]	C	T	2.984e^-4	0.955	INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21867241	X_21867241_SNP [dm3] X_22465405_SNP [dm6]	T	C	2.985e^-4	0.955	SYNONYMOUS_CODING CG14619 INTRON CG14619
2L	1273928	2L_1273928_SNP [dm3] 2L_1273928_SNP [dm6]	C	T	2.986e^-4	0.955	INTRON robo3
3R	11005303	3R_11005303_SNP [dm3] 3R_15179581_SNP [dm6]	G	T	2.986e^-4	0.955	UPSTREAM Mf INTRON Gyc88E & 1 other
X	12602942	X_12602942_SNP [dm3] X_12708909_SNP [dm6]	A	T	2.987e^-4	0.955	DOWNSTREAM CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	5139732	2L_5139732_SNP [dm3] 2L_5139732_SNP [dm6]	T	C	2.989e^-4	0.955	INTRON Msp300
X	9009655	X_9009655_SNP [dm3] X_9115622_SNP [dm6]	T	C	2.995e^-4	0.955	NON_SYNONYMOUS_CODING AP-1gamma
X	4305331	X_4305331_SNP [dm3] X_4411298_SNP [dm6]	C	A	2.998e^-4	0.955	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	21622998	3L_21622998_SNP [dm3] 3L_21629898_SNP [dm6]	A	G	3.001e^-4	0.955	NON_SYNONYMOUS_CODING MED1 DOWNSTREAM MED1
3L	21103744	3L_21103744_SNP [dm3] 3L_21110644_SNP [dm6]	G	A	3.006e^-4	0.955	INTRON ko	regulatory region REDfly_CRMs
2L	13340292	2L_13340292_SNP [dm3] 2L_13340292_SNP [dm6]	T	C	3.010e^-4	0.955	INTERGENIC
2L	4984097	2L_4984097_SNP [dm3] 2L_4984097_SNP [dm6]	C	T	3.011e^-4	0.955	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_chinmo
2L	8747237	2L_8747237_SNP [dm3] 2L_8747237_SNP [dm6]	C	G	3.017e^-4	0.955	INTERGENIC
2L	4356930	2L_4356930_SNP [dm3] 2L_4356930_SNP [dm6]	G	A	3.024e^-4	0.955	INTERGENIC
3L	15326205	3L_15326205_SNP [dm3] 3L_15333105_SNP [dm6]	A	C	3.030e^-4	0.955	DOWNSTREAM CR43247 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	16687258	2L_16687258_SNP [dm3] 2L_16687258_SNP [dm6]	C	A	3.036e^-4	0.955	INTRON grp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9354866	2L_9354866_SNP [dm3] 2L_9354866_SNP [dm6]	T	C	3.040e^-4	0.955	INTERGENIC
3R	18513182	3R_18513182_SNP [dm3] 3R_22687460_SNP [dm6]	T	C	3.043e^-4	0.955	UPSTREAM Gclm DOWNSTREAM wfs1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17813449	3R_17813449_SNP [dm3] 3R_21987727_SNP [dm6]	A	G	3.048e^-4	0.955	INTRON Eip93F
2R	2416351	2R_2416351_SNP [dm3] 2R_6528846_SNP [dm6]	C	G	3.053e^-4	0.955	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	5814364	X_5814364_SNP [dm3] X_5920331_SNP [dm6]	G	C	3.060e^-4	0.955	INTRON CG3726
3L	11545373	3L_11545373_SNP [dm3] 3L_11552273_SNP [dm6]	A	G	3.062e^-4	0.955	DOWNSTREAM mir-4968 INTRON Mob2	TF binding site BDTNP1_TFBS_dl
X	16949675	X_16949675_SNP [dm3] X_17055642_SNP [dm6]	C	T	3.069e^-4	0.955	INTRON CG45002
2L	16936406	2L_16936406_DEL [dm3] 2L_16936406_DEL [dm6]	ATACACA	A	3.070e^-4	0.955	INTERGENIC
X	4306080	X_4306080_SNP [dm3] X_4412047_SNP [dm6]	A	G	3.073e^-4	0.955	UPSTREAM bi INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	22142851	X_22142851_SNP [dm3] X_22741015_SNP [dm6]	C	G	3.078e^-4	0.955	INTRON CR44997
3R	13714693	3R_13714693_SNP [dm3] 3R_17888971_SNP [dm6]	A	G	3.080e^-4	0.955	INTRON Rim
2L	16712849	2L_16712849_SNP [dm3] 2L_16712849_SNP [dm6]	A	G	3.081e^-4	0.955	INTRON CG31808
2L	19113576	2L_19113576_SNP [dm3] 2L_19113576_SNP [dm6]	C	T	3.089e^-4	0.955	SYNONYMOUS_CODING amd UPSTREAM CG10561	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25648287	3R_25648287_SNP [dm3] 3R_29822565_SNP [dm6]	A	G	3.089e^-4	0.955	NON_SYNONYMOUS_CODING neo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18339561	3L_18339561_INS [dm3] 3L_18346461_INS [dm6]	T	TT	3.090e^-4	0.955	INTERGENIC
3L	820175	3L_820175_SNP [dm3] 3L_820175_SNP [dm6]	T	A	3.091e^-4	0.955	UPSTREAM CR43883 INTERGENIC
3L	1333600	3L_1333600_SNP [dm3] 3L_1333600_SNP [dm6]	A	G	3.108e^-4	0.955	SYNONYMOUS_CODING CG2211 UPSTREAM msd5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	22309930	3L_22309930_SNP [dm3] 3L_22316830_SNP [dm6]	G	T	3.109e^-4	0.955	INTRON Ten-m
2L	7632954	2L_7632954_INS [dm3] 2L_7632954_INS [dm6]	T	TAGTCT	3.116e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	21146812	X_21146812_SNP [dm3] X_21275785_SNP [dm6]	G	A	3.118e^-4	0.955	INTRON CG32521
2R	15740763	2R_15740763_SNP [dm3] 2R_19853258_SNP [dm6]	A	T	3.129e^-4	0.955	INTERGENIC
X	10340600	X_10340600_SNP [dm3] X_10446567_SNP [dm6]	C	A	3.154e^-4	0.955	INTRON CG32683
2L	12270335	2L_12270335_SNP [dm3] 2L_12270335_SNP [dm6]	C	T	3.154e^-4	0.955	UPSTREAM aret INTRON aret
2R	16957769	2R_16957769_SNP [dm3] 2R_21070264_SNP [dm6]	A	G	3.155e^-4	0.955	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
X	7628334	X_7628334_SNP [dm3] X_7734301_SNP [dm6]	T	C	3.172e^-4	0.955	UTR_5_PRIME Pdp UPSTREAM Rab39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10705609	2R_10705609_SNP [dm3] 2R_14818104_SNP [dm6]	G	T	3.181e^-4	0.955	SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	7168468	3L_7168468_SNP [dm3] 3L_7175368_SNP [dm6]	T	C	3.184e^-4	0.955	NON_SYNONYMOUS_CODING Dscam2 INTRON Dscam2
2L	920018	2L_920018_SNP [dm3] 2L_920018_SNP [dm6]	T	C	3.198e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16712927	2L_16712927_SNP [dm3] 2L_16712927_SNP [dm6]	G	A	3.202e^-4	0.955	INTRON CG31808
2R	19961165	2R_19961165_SNP [dm3] 2R_24073642_SNP [dm6]	G	A	3.204e^-4	0.955	UPSTREAM Mlp60A DOWNSTREAM CG3209 INTERGENIC
2L	7788218	2L_7788218_SNP [dm3] 2L_7788218_SNP [dm6]	T	C	3.207e^-4	0.955	SYNONYMOUS_CODING CG7149
3R	18320697	3R_18320697_INS [dm3] 3R_22494975_INS [dm6]	T	TAT	3.221e^-4	0.955	INTERGENIC
2L	1078645	2L_1078645_SNP [dm3] 2L_1078645_SNP [dm6]	G	A	3.225e^-4	0.955	SYNONYMOUS_CODING ast UPSTREAM S	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12411502	2L_12411502_SNP [dm3] 2L_12411502_SNP [dm6]	G	A	3.233e^-4	0.955	INTRON vir-1
3R	26760791	3R_26760791_SNP [dm3] 3R_30935069_SNP [dm6]	T	C	3.234e^-4	0.955	DOWNSTREAM CG15549 INTERGENIC
3L	3907765	3L_3907765_SNP [dm3] 3L_3907765_SNP [dm6]	G	C	3.236e^-4	0.955	UTR_3_PRIME ida DOWNSTREAM mge
2R	12314459	2R_12314459_SNP [dm3] 2R_16426954_SNP [dm6]	G	A	3.237e^-4	0.955	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21031722	3R_21031722_SNP [dm3] 3R_25206000_SNP [dm6]	G	T	3.253e^-4	0.955	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
2L	10217207	2L_10217207_SNP [dm3] 2L_10217207_SNP [dm6]	C	T	3.263e^-4	0.955	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25195338	3R_25195338_SNP [dm3] 3R_29369616_SNP [dm6]	A	G	3.267e^-4	0.955	NON_SYNONYMOUS_CODING CG45546	TF binding site mE1_TFBS_inv
2L	7963027	2L_7963027_SNP [dm3] 2L_7963027_SNP [dm6]	G	A	3.270e^-4	0.955	INTRON Snoo
2R	15395430	2R_15395430_SNP [dm3] 2R_19507925_SNP [dm6]	C	T	3.272e^-4	0.955	UPSTREAM Ir56b INTERGENIC
3L	19461434	3L_19461434_SNP [dm3] 3L_19468334_SNP [dm6]	A	C	3.276e^-4	0.955	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
2L	20985890	2L_20985890_SNP [dm3] 2L_20985890_SNP [dm6]	A	C	3.277e^-4	0.955	INTRON CG42238	TF binding site mE1_TFBS_HSA
3L	2215049	3L_2215049_SNP [dm3] 3L_2215049_SNP [dm6]	A	G	3.295e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19018000	3L_19018000_SNP [dm3] 3L_19024900_SNP [dm6]	A	T	3.296e^-4	0.955	INTRON nkd
2R	3175281	2R_3175281_SNP [dm3] 2R_7287776_SNP [dm6]	T	G	3.323e^-4	0.955	INTRON pwn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16673398	2L_16673398_SNP [dm3] 2L_16673398_SNP [dm6]	T	G	3.339e^-4	0.955	INTRON Trpgamma
3R	11029261	3R_11029261_SNP [dm3] 3R_15203539_SNP [dm6]	T	A	3.343e^-4	0.955	DOWNSTREAM CG42542 INTRON Spn88Ea	TF binding site mE1_TFBS_cad
3R	18805505	3R_18805505_SNP [dm3] 3R_22979783_SNP [dm6]	G	A	3.344e^-4	0.955	INTERGENIC
3L	18024825	3L_18024825_SNP [dm3] 3L_18031725_SNP [dm6]	C	T	3.349e^-4	0.955	INTRON Eip75B
2L	16784450	2L_16784450_SNP [dm3] 2L_16784450_SNP [dm6]	C	A	3.351e^-4	0.955	INTRON Mhc	TF binding site mE1_TFBS_cad
3R	14675512	3R_14675512_SNP [dm3] 3R_18849790_SNP [dm6]	G	A	3.353e^-4	0.955	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8772821	2L_8772821_SNP [dm3] 2L_8772821_SNP [dm6]	G	A	3.356e^-4	0.955	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
X	6422509	X_6422509_SNP [dm3] X_6528476_SNP [dm6]	A	T	3.358e^-4	0.955	UPSTREAM CG3342 & 1 other INTERGENIC
2L	3418735	2L_3418735_SNP [dm3] 2L_3418735_SNP [dm6]	A	G	3.366e^-4	0.955	DOWNSTREAM CG31952 INTRON pgant2
2L	11251882	2L_11251882_SNP [dm3] 2L_11251882_SNP [dm6]	T	G	3.372e^-4	0.955	INTRON ab	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11740071	2R_11740071_SNP [dm3] 2R_15852566_SNP [dm6]	A	G	3.383e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11740076	2R_11740076_SNP [dm3] 2R_15852571_SNP [dm6]	G	C	3.383e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21047477	X_21047477_INS [dm3] X_21176450_INS [dm6]	A	AA	3.384e^-4	0.955	INTERGENIC
3L	1689580	3L_1689580_SNP [dm3] 3L_1689580_SNP [dm6]	A	G	3.388e^-4	0.955	UTR_5_PRIME CG7991 INTRON CG7991
3R	21716139	3R_21716139_SNP [dm3] 3R_25890417_SNP [dm6]	G	A	3.389e^-4	0.955	INTRON Lnk
2L	12719472	2L_12719472_SNP [dm3] 2L_12719472_SNP [dm6]	G	C	3.407e^-4	0.955	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
3R	22910677	3R_22910677_SNP [dm3] 3R_27084955_SNP [dm6]	G	A	3.410e^-4	0.955	INTRON Cpr97Ea
2R	12222422	2R_12222422_SNP [dm3] 2R_16334917_SNP [dm6]	A	G	3.429e^-4	0.955	UPSTREAM Vha44 INTRON Vha44
3R	22355080	3R_22355080_SNP [dm3] 3R_26529358_SNP [dm6]	A	T	3.436e^-4	0.955	INTRON plum
3L	11507538	3L_11507538_SNP [dm3] 3L_11514438_SNP [dm6]	A	C	3.452e^-4	0.955	INTRON CG7512
2R	3175692	2R_3175692_SNP [dm3] 2R_7288187_SNP [dm6]	T	G	3.453e^-4	0.955	INTRON pwn
2L	13968375	2L_13968375_SNP [dm3] 2L_13968375_SNP [dm6]	A	G	3.457e^-4	0.955	SYNONYMOUS_CODING NimB4 UPSTREAM NimB3	TF binding site mE1_TFBS_cad
3R	12509245	3R_12509245_SNP [dm3] 3R_16683523_SNP [dm6]	T	C	3.471e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	16782508	2L_16782508_SNP [dm3] 2L_16782508_SNP [dm6]	C	T	3.471e^-4	0.955	SYNONYMOUS_CODING Mhc	TF binding site mE1_TFBS_chinmo
2L	16796634	2L_16796634_SNP [dm3] 2L_16796634_SNP [dm6]	C	G	3.471e^-4	0.955	NON_SYNONYMOUS_CODING Ugt36Bb DOWNSTREAM Ugt36Ba
2L	16806503	2L_16806503_SNP [dm3] 2L_16806503_SNP [dm6]	A	G	3.471e^-4	0.955	UPSTREAM CG13272 INTRON CG13280 & 1 other
3L	8690511	3L_8690511_SNP [dm3] 3L_8697411_SNP [dm6]	T	C	3.495e^-4	0.955	INTERGENIC
2L	5532868	2L_5532868_SNP [dm3] 2L_5532868_SNP [dm6]	A	C	3.508e^-4	0.955	SYNONYMOUS_CODING Cap-D3 UPSTREAM CG7277	TF binding site mE1_TFBS_cad
2R	12245958	2R_12245958_SNP [dm3] 2R_16358453_SNP [dm6]	C	G	3.513e^-4	0.955	DOWNSTREAM CR45322 EXON CR43416
3R	22732803	3R_22732803_SNP [dm3] 3R_26907081_SNP [dm6]	A	G	3.515e^-4	0.955	INTRON T48	regulatory region REDfly_CRMs
3R	26082000	3R_26082000_SNP [dm3] 3R_30256278_SNP [dm6]	T	A	3.519e^-4	0.955	INTERGENIC
2L	709033	2L_709033_SNP [dm3] 2L_709033_SNP [dm6]	T	A	3.521e^-4	0.955	INTRON ds	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12225368	2L_12225368_SNP [dm3] 2L_12225368_SNP [dm6]	C	T	3.521e^-4	0.955	INTRON aret
3L	2215063	3L_2215063_SNP [dm3] 3L_2215063_SNP [dm6]	T	A	3.523e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12211686	X_12211686_DEL [dm3] X_12317653_DEL [dm6]	GCAGTGG	G	3.544e^-4	0.955	INTRON Ten-a	TF binding site mE1_TFBS_chinmo
3R	26115473	3R_26115473_INS [dm3] 3R_30289751_INS [dm6]	T	TT	3.546e^-4	0.955	INTRON hdc
2L	6543082	2L_6543082_SNP [dm3] 2L_6543082_SNP [dm6]	G	A	3.548e^-4	0.955	INTRON eya	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7628624	X_7628624_SNP [dm3] X_7734591_SNP [dm6]	C	T	3.550e^-4	0.955	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22636781	3R_22636781_SNP [dm3] 3R_26811059_SNP [dm6]	G	T	3.551e^-4	0.955	INTRON Tl
2R	12053878	2R_12053878_SNP [dm3] 2R_16166373_SNP [dm6]	C	A	3.559e^-4	0.955	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad
3L	14630741	3L_14630741_SNP [dm3] 3L_14637641_SNP [dm6]	A	G	3.568e^-4	0.955	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	19212391	3L_19212391_SNP [dm3] 3L_19219291_SNP [dm6]	T	C	3.572e^-4	0.955	INTRON fz2
2R	17341919	2R_17341919_SNP [dm3] 2R_21454414_SNP [dm6]	T	G	3.577e^-4	0.955	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	16833304	2L_16833304_SNP [dm3] 2L_16833304_SNP [dm6]	A	G	3.578e^-4	0.955	SPLICE_SITE_REGION CG13282 INTRON CG13282
2R	9593573	2R_9593573_SNP [dm3] 2R_13706068_SNP [dm6]	A	G	3.586e^-4	0.955	INTRON fas
2R	18981897	2R_18981897_SNP [dm3] 2R_23094374_SNP [dm6]	C	T	3.587e^-4	0.955	UPSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3142858	2L_3142858_SNP [dm3] 2L_3142858_SNP [dm6]	C	T	3.588e^-4	0.955	INTRON toc
2L	5735288	2L_5735288_SNP [dm3] 2L_5735288_SNP [dm6]	G	A	3.600e^-4	0.955	INTRON CG11030 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12056313	3L_12056313_DEL [dm3] 3L_12063213_DEL [dm6]	CC	C	3.608e^-4	0.955	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	15426597	X_15426597_SNP [dm3] X_15532564_SNP [dm6]	G	A	3.617e^-4	0.955	INTRON Ac13E	TF binding site BDTNP1_TFBS_twi
2R	16713462	2R_16713462_SNP [dm3] 2R_20825957_SNP [dm6]	A	C	3.618e^-4	0.955	INTRON insc	TF binding site mE1_TFBS_cad
3L	676950	3L_676950_DEL [dm3] 3L_676950_DEL [dm6]	CCC	C	3.619e^-4	0.955	DOWNSTREAM CG17129 INTERGENIC
2R	10705642	2R_10705642_SNP [dm3] 2R_14818137_SNP [dm6]	A	G	3.620e^-4	0.955	SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	7454429	2R_7454429_SNP [dm3] 2R_11566924_SNP [dm6]	A	C	3.631e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10191049	3L_10191049_SNP [dm3] 3L_10197949_SNP [dm6]	A	G	3.632e^-4	0.955	INTRON ect
2L	3097983	2L_3097983_SNP [dm3] 2L_3097983_SNP [dm6]	G	C	3.636e^-4	0.955	SYNONYMOUS_CODING toc INTRON toc
2L	5139730	2L_5139730_SNP [dm3] 2L_5139730_SNP [dm6]	T	A	3.651e^-4	0.955	INTRON Msp300
3R	10631978	3R_10631978_DEL [dm3] 3R_14806256_DEL [dm6]	CTC	C	3.654e^-4	0.955	UTR_3_PRIME btsz DOWNSTREAM btsz	TF binding site BDTNP1_TFBS_hb
3R	21760154	3R_21760154_SNP [dm3] 3R_25934432_SNP [dm6]	T	A	3.660e^-4	0.955	INTRON CCAP-R
3R	15674034	3R_15674034_SNP [dm3] 3R_19848312_SNP [dm6]	T	C	3.666e^-4	0.955	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17057200	3R_17057200_SNP [dm3] 3R_21231478_SNP [dm6]	G	A	3.672e^-4	0.955	SYNONYMOUS_CODING e	TF binding site mE1_TFBS_cad
X	2149932	X_2149932_SNP [dm3] X_2255899_SNP [dm6]	G	T	3.675e^-4	0.955	SYNONYMOUS_CODING CG3078	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	1025424	2L_1025424_SNP [dm3] 2L_1025424_SNP [dm6]	A	T	3.695e^-4	0.955	DOWNSTREAM CG4375 INTRON IA-2	TF binding site mE1_TFBS_chinmo
3R	20170091	3R_20170091_SNP [dm3] 3R_24344369_SNP [dm6]	T	A	3.697e^-4	0.955	UTR_3_PRIME CG5746 DOWNSTREAM Ms
2L	1122115	2L_1122115_SNP [dm3] 2L_1122115_SNP [dm6]	C	T	3.700e^-4	0.955	INTRON Pino
2L	16805923	2L_16805923_SNP [dm3] 2L_16805923_SNP [dm6]	G	C	3.700e^-4	0.955	INTRON CG13280 & 1 other
2L	2194879	2L_2194879_SNP [dm3] 2L_2194879_SNP [dm6]	G	T	3.703e^-4	0.955	INTRON CG34172	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	6264354	2L_6264354_SNP [dm3] 2L_6264354_SNP [dm6]	A	G	3.712e^-4	0.955	INTRON Ddr & 1 other	TF binding site mE1_TFBS_sens
3R	16208551	3R_16208551_SNP [dm3] 3R_20382829_SNP [dm6]	C	T	3.728e^-4	0.955	INTRON Gfrl
2R	15462944	2R_15462944_SNP [dm3] 2R_19575439_SNP [dm6]	G	C	3.736e^-4	0.955	INTRON sm
3L	4665199	3L_4665199_SNP [dm3] 3L_4665199_SNP [dm6]	G	T	3.740e^-4	0.955	DOWNSTREAM CG32236 INTRON axo
3L	23817168	3L_23817168_DEL [dm3] 3L_23824068_DEL [dm6]	AA	A	3.742e^-4	0.955	INTERGENIC
2R	16686749	2R_16686749_SNP [dm3] 2R_20799244_SNP [dm6]	A	C	3.751e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16141749	3R_16141749_SNP [dm3] 3R_20316027_SNP [dm6]	A	C	3.762e^-4	0.955	INTRON CG42668
2L	13500698	2L_13500698_SNP [dm3] 2L_13500698_SNP [dm6]	A	G	3.770e^-4	0.955	UTR_3_PRIME B4 DOWNSTREAM CG42784	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	16922580	2L_16922580_SNP [dm3] 2L_16922580_SNP [dm6]	G	A	3.771e^-4	0.955	INTERGENIC
3R	11470447	3R_11470447_SNP [dm3] 3R_15644725_SNP [dm6]	C	T	3.777e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	22386797	3L_22386797_SNP [dm3] 3L_22393697_SNP [dm6]	T	C	3.793e^-4	0.955	INTRON Ten-m
3L	14280825	3L_14280825_SNP [dm3] 3L_14287725_SNP [dm6]	A	G	3.796e^-4	0.955	INTRON fz	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	6061734	2L_6061734_SNP [dm3] 2L_6061734_SNP [dm6]	G	A	3.801e^-4	0.955	SYNONYMOUS_CODING CG9140 DOWNSTREAM CG34180	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	16796536	2L_16796536_SNP [dm3] 2L_16796536_SNP [dm6]	C	A	3.805e^-4	0.955	UPSTREAM Ugt36Bb DOWNSTREAM Ugt36Ba INTERGENIC
2L	16797380	2L_16797380_SNP [dm3] 2L_16797380_SNP [dm6]	C	T	3.805e^-4	0.955	NON_SYNONYMOUS_CODING Ugt36Bb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16801918	2L_16801918_SNP [dm3] 2L_16801918_SNP [dm6]	T	C	3.805e^-4	0.955	DOWNSTREAM CG13280 & 1 other INTERGENIC
2L	16805186	2L_16805186_SNP [dm3] 2L_16805186_SNP [dm6]	C	T	3.805e^-4	0.955	START_GAINED CG13272 UTR_5_PRIME CG13272 INTRON CG13280
2L	16805187	2L_16805187_DEL [dm3] 2L_16805187_DEL [dm6]	GGGCACG	G	3.805e^-4	0.955	UTR_5_PRIME CG13272 INTRON CG13280
2L	16813146	2L_16813146_SNP [dm3] 2L_16813146_SNP [dm6]	C	T	3.805e^-4	0.955	INTRON CG13280 & 1 other
2L	16814044	2L_16814044_SNP [dm3] 2L_16814044_SNP [dm6]	C	A	3.805e^-4	0.955	SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16814628	2L_16814628_SNP [dm3] 2L_16814628_SNP [dm6]	T	C	3.805e^-4	0.955	NON_SYNONYMOUS_CODING CG13272 INTRON CG13280
X	19612083	X_19612083_SNP [dm3] X_19718050_SNP [dm6]	C	T	3.806e^-4	0.955	UPSTREAM CG12531 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	16019192	3L_16019192_SNP [dm3] 3L_16026092_SNP [dm6]	C	T	3.807e^-4	0.955	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26533150	3R_26533150_SNP [dm3] 3R_30707428_SNP [dm6]	C	T	3.810e^-4	0.955	INTERGENIC
2R	11740122	2R_11740122_SNP [dm3] 2R_15852617_SNP [dm6]	G	C	3.815e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6547365	3R_6547365_SNP [dm3] 3R_10721643_SNP [dm6]	A	G	3.816e^-4	0.955	INTERGENIC
2L	9342092	2L_9342092_SNP [dm3] 2L_9342092_SNP [dm6]	A	T	3.819e^-4	0.955	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
2L	7703732	2L_7703732_SNP [dm3] 2L_7703732_SNP [dm6]	G	A	3.820e^-4	0.955	INTRON Tep3	TF binding site mE1_TFBS_HSA
2L	4036960	2L_4036960_SNP [dm3] 2L_4036960_SNP [dm6]	T	C	3.821e^-4	0.955	INTRON ed
X	11155418	X_11155418_SNP [dm3] X_11261385_SNP [dm6]	A	T	3.824e^-4	0.955	INTRON CG44422
2L	9341308	2L_9341308_SNP [dm3] 2L_9341308_SNP [dm6]	G	A	3.829e^-4	0.955	UTR_3_PRIME Eaat1
3L	11302844	3L_11302844_SNP [dm3] 3L_11309744_SNP [dm6]	C	T	3.840e^-4	0.955	INTERGENIC
2L	16740166	2L_16740166_SNP [dm3] 2L_16740166_SNP [dm6]	T	A	3.842e^-4	0.955	INTRON ChLD3
3L	16000648	3L_16000648_SNP [dm3] 3L_16007548_SNP [dm6]	A	G	3.842e^-4	0.955	SYNONYMOUS_CODING mib1 DOWNSTREAM mRpS31	TF binding site mE1_TFBS_cad
3R	16595537	3R_16595537_SNP [dm3] 3R_20769815_SNP [dm6]	A	T	3.850e^-4	0.955	INTRON Syp
2R	9218402	2R_9218402_SNP [dm3] 2R_13330897_SNP [dm6]	C	T	3.866e^-4	0.955	EXON CR44206	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9009675	X_9009675_SNP [dm3] X_9115642_SNP [dm6]	T	C	3.866e^-4	0.955	SYNONYMOUS_CODING AP-1gamma
2R	19112851	2R_19112851_SNP [dm3] 2R_23225328_SNP [dm6]	T	G	3.869e^-4	0.955	INTERGENIC
2L	16725922	2L_16725922_SNP [dm3] 2L_16725922_SNP [dm6]	G	A	3.875e^-4	0.955	SYNONYMOUS_CODING VhaSFD INTRON VhaSFD
3R	18512381	3R_18512381_SNP [dm3] 3R_22686659_SNP [dm6]	T	C	3.898e^-4	0.955	UPSTREAM CG17625 & 1 other DOWNSTREAM wfs1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2R	6954325	2R_6954325_SNP [dm3] 2R_11066820_SNP [dm6]	A	G	3.901e^-4	0.955	INTRON luna
3L	19398029	3L_19398029_SNP [dm3] 3L_19404929_SNP [dm6]	C	T	3.903e^-4	0.955	UPSTREAM CR43966 INTRON CG32206
3L	21711158	3L_21711158_SNP [dm3] 3L_21718058_SNP [dm6]	A	T	3.921e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_eve mE1_TFBS_HSA
3R	791543	3R_791543_SNP [dm3] 3R_4965821_SNP [dm6]	A	T	3.924e^-4	0.955	INTRON CG1124
2L	2202648	2L_2202648_SNP [dm3] 2L_2202648_SNP [dm6]	G	A	3.926e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17293549	2R_17293549_SNP [dm3] 2R_21406044_SNP [dm6]	C	T	3.944e^-4	0.955	INTRON Sdc
2R	17293550	2R_17293550_SNP [dm3] 2R_21406045_SNP [dm6]	G	C	3.944e^-4	0.955	INTRON Sdc
3L	16523072	3L_16523072_SNP [dm3] 3L_16529972_SNP [dm6]	G	A	3.946e^-4	0.955	INTRON CG43373
3R	26757685	3R_26757685_SNP [dm3] 3R_30931963_SNP [dm6]	T	G	3.952e^-4	0.955	INTERGENIC
3R	13410304	3R_13410304_SNP [dm3] 3R_17584582_SNP [dm6]	T	C	3.957e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_inv
2L	16609506	2L_16609506_SNP [dm3] 2L_16609506_SNP [dm6]	C	A	3.961e^-4	0.955	SYNONYMOUS_CODING CG4631 INTRON CG42389
2L	4030243	2L_4030243_SNP [dm3] 2L_4030243_SNP [dm6]	A	T	3.964e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	7315041	3L_7315041_SNP [dm3] 3L_7321941_SNP [dm6]	T	C	3.965e^-4	0.955	SPLICE_SITE_REGION RhoGEF4 DOWNSTREAM CG8607 INTRON RhoGEF4
2L	3874577	2L_3874577_SNP [dm3] 2L_3874577_SNP [dm6]	T	A	3.965e^-4	0.955	SYNONYMOUS_CODING capu	TF binding site mE1_TFBS_chinmo
3R	26557004	3R_26557004_SNP [dm3] 3R_30731282_SNP [dm6]	A	G	3.976e^-4	0.955	UPSTREAM CG11313 INTERGENIC	TF binding site mE1_TFBS_cad
2L	18529090	2L_18529090_SNP [dm3] 2L_18529090_SNP [dm6]	T	G	3.993e^-4	0.955	INTRON CG10211	TF binding site mE1_TFBS_cad
2R	9461643	2R_9461643_SNP [dm3] 2R_13574138_SNP [dm6]	C	T	3.998e^-4	0.955	SYNONYMOUS_CODING CG42808 UPSTREAM CR44365	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15673785	3R_15673785_DEL [dm3] 3R_19848063_DEL [dm6]	GG	G	4.002e^-4	0.955	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	2316374	2L_2316374_SNP [dm3] 2L_2316374_SNP [dm6]	G	A	4.005e^-4	0.955	INTRON CG9967 & 1 other
3L	8876800	3L_8876800_SNP [dm3] 3L_8883700_SNP [dm6]	G	T	4.009e^-4	0.955	INTRON dally
2L	16619531	2L_16619531_SNP [dm3] 2L_16619531_SNP [dm6]	G	A	4.013e^-4	0.955	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18273943	2R_18273943_SNP [dm3] 2R_22386438_SNP [dm6]	C	A	4.013e^-4	0.955	UTR_5_PRIME CG13506 UPSTREAM CR44757
3R	12511468	3R_12511468_SNP [dm3] 3R_16685746_SNP [dm6]	T	C	4.017e^-4	0.955	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18234509	3R_18234509_SNP [dm3] 3R_22408787_SNP [dm6]	C	T	4.033e^-4	0.955	SYNONYMOUS_CODING CG13850 DOWNSTREAM CG13855
2R	10706590	2R_10706590_SNP [dm3] 2R_14819085_SNP [dm6]	C	T	4.035e^-4	0.955	SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	12211667	X_12211667_SNP [dm3] X_12317634_SNP [dm6]	G	C	4.035e^-4	0.955	INTRON Ten-a	TF binding site mE1_TFBS_chinmo
2L	8926870	2L_8926870_SNP [dm3] 2L_8926870_SNP [dm6]	G	A	4.036e^-4	0.955	NON_SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7456603	2L_7456603_SNP [dm3] 2L_7456603_SNP [dm6]	A	C	4.039e^-4	0.955	UPSTREAM Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16802237	2L_16802237_SNP [dm3] 2L_16802237_SNP [dm6]	G	A	4.039e^-4	0.955	SYNONYMOUS_CODING CG13280 DOWNSTREAM Ugt36Bc
2L	8023906	2L_8023906_SNP [dm3] 2L_8023906_SNP [dm6]	A	T	4.043e^-4	0.955	INTRON Tg	regulatory region REDfly_CRMs
3R	25634259	3R_25634259_SNP [dm3] 3R_29808537_SNP [dm6]	C	T	4.043e^-4	0.955	SYNONYMOUS_CODING ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2663885	3L_2663885_SNP [dm3] 3L_2663885_SNP [dm6]	T	G	4.050e^-4	0.955	DOWNSTREAM CG33234 INTRON Fife
3L	17311143	3L_17311143_SNP [dm3] 3L_17318043_SNP [dm6]	T	C	4.053e^-4	0.955	INTERGENIC
3L	7175083	3L_7175083_SNP [dm3] 3L_7181983_SNP [dm6]	T	G	4.053e^-4	0.955	INTRON Dscam2
3L	17030883	3L_17030883_SNP [dm3] 3L_17037783_SNP [dm6]	A	G	4.054e^-4	0.955	SYNONYMOUS_CODING scaf6 UTR_3_PRIME scaf6 DOWNSTREAM beg	TF binding site mE1_TFBS_cad
2L	12684643	2L_12684643_SNP [dm3] 2L_12684643_SNP [dm6]	C	T	4.059e^-4	0.955	SYNONYMOUS_CODING pdm2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9341977	2L_9341977_SNP [dm3] 2L_9341977_SNP [dm6]	A	T	4.060e^-4	0.955	UPSTREAM CG3748 DOWNSTREAM Eaat1 INTERGENIC
X	6570622	X_6570622_SNP [dm3] X_6676589_SNP [dm6]	C	G	4.064e^-4	0.955	NON_SYNONYMOUS_CODING Mcm6 DOWNSTREAM CG3192	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7254378	3L_7254378_SNP [dm3] 3L_7261278_SNP [dm6]	T	G	4.075e^-4	0.955	INTRON CG14830
2R	16319205	2R_16319205_SNP [dm3] 2R_20431700_SNP [dm6]	A	C	4.076e^-4	0.955	INTRON CG12484
3L	15493110	3L_15493110_SNP [dm3] 3L_15500010_SNP [dm6]	T	C	4.080e^-4	0.955	SYNONYMOUS_CODING CG7275 UPSTREAM CG7272	TF binding site mE1_TFBS_sens
2R	15173624	2R_15173624_SNP [dm3] 2R_19286119_SNP [dm6]	G	A	4.091e^-4	0.955	SYNONYMOUS_CODING CG10474 UPSTREAM CG10476	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1139117	2L_1139117_SNP [dm3] 2L_1139117_SNP [dm6]	A	T	4.094e^-4	0.955	SPLICE_SITE_REGION CG4577 INTRON CG4577	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10219579	2L_10219579_SNP [dm3] 2L_10219579_SNP [dm6]	T	C	4.101e^-4	0.955	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3L	16972685	3L_16972685_INS [dm3] 3L_16979585_INS [dm6]	A	AA	4.102e^-4	0.955	INTRON Exn
2R	13796188	2R_13796188_SNP [dm3] 2R_17908683_SNP [dm6]	T	A	4.109e^-4	0.955	INTRON Elk
3R	26960433	3R_26960433_DEL [dm3] 3R_31134711_DEL [dm6]	TT	T	4.112e^-4	0.955	INTRON Gycbeta100B
2L	796449	2L_796449_SNP [dm3] 2L_796449_SNP [dm6]	G	T	4.115e^-4	0.955	INTERGENIC
2R	17056817	2R_17056817_SNP [dm3] 2R_21169312_SNP [dm6]	A	C	4.126e^-4	0.955	SYNONYMOUS_CODING hng1 UPSTREAM CG4266 DOWNSTREAM LSm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18718299	3R_18718299_SNP [dm3] 3R_22892577_SNP [dm6]	T	C	4.128e^-4	0.955	INTERGENIC
2L	12857072	2L_12857072_SNP [dm3] 2L_12857072_SNP [dm6]	T	G	4.135e^-4	0.955	INTERGENIC
2L	13041211	2L_13041211_SNP [dm3] 2L_13041211_SNP [dm6]	T	C	4.143e^-4	0.955	INTRON CG9932
2L	1719754	2L_1719754_SNP [dm3] 2L_1719754_SNP [dm6]	G	C	4.149e^-4	0.955	INTRON Rim2
3L	19504547	3L_19504547_SNP [dm3] 3L_19511447_SNP [dm6]	C	T	4.152e^-4	0.955	INTERGENIC
3L	6064873	3L_6064873_SNP [dm3] 3L_6071773_SNP [dm6]	A	T	4.176e^-4	0.955	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC	TF binding site mE1_TFBS_bab1
X	20819106	X_20819106_SNP [dm3] X_20948079_SNP [dm6]	A	T	4.186e^-4	0.955	INTERGENIC
3R	22258853	3R_22258853_SNP [dm3] 3R_26433131_SNP [dm6]	A	G	4.189e^-4	0.955	INTERGENIC
2L	9444754	2L_9444754_SNP [dm3] 2L_9444754_SNP [dm6]	G	C	4.191e^-4	0.955	INTRON numb
X	12104968	X_12104968_SNP [dm3] X_12210935_SNP [dm6]	A	T	4.192e^-4	0.955	INTRON Ten-a
3R	11470416	3R_11470416_SNP [dm3] 3R_15644694_SNP [dm6]	C	T	4.192e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
X	4315548	X_4315548_SNP [dm3] X_4421515_SNP [dm6]	G	A	4.193e^-4	0.955	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	3842580	2R_3842580_SNP [dm3] 2R_7955075_SNP [dm6]	A	G	4.212e^-4	0.955	UPSTREAM CG14764 INTRON CG14764
2L	5846705	2L_5846705_SNP [dm3] 2L_5846705_SNP [dm6]	C	T	4.215e^-4	0.955	INTRON TrissinR
3L	15984147	3L_15984147_SNP [dm3] 3L_15991047_SNP [dm6]	G	A	4.218e^-4	0.955	UTR_3_PRIME Hip14	TF binding site mE1_TFBS_cad
2L	16692634	2L_16692634_SNP [dm3] 2L_16692634_SNP [dm6]	C	T	4.225e^-4	0.955	INTRON grp
2R	2416247	2R_2416247_SNP [dm3] 2R_6528742_SNP [dm6]	G	A	4.228e^-4	0.955	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	2416263	2R_2416263_SNP [dm3] 2R_6528758_SNP [dm6]	A	T	4.228e^-4	0.955	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	394191	2L_394191_SNP [dm3] 2L_394191_SNP [dm6]	G	A	4.228e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	8543637	3L_8543637_SNP [dm3] 3L_8550537_SNP [dm6]	A	T	4.229e^-4	0.955	INTRON rhea
2L	2191263	2L_2191263_INS [dm3] 2L_2191263_INS [dm6]	G	AA	4.232e^-4	0.955	INTRON CG10874 EXON CR44065
2L	9343072	2L_9343072_SNP [dm3] 2L_9343072_SNP [dm6]	C	A	4.233e^-4	0.955	SYNONYMOUS_CODING CG3748
2L	21867089	2L_21867089_SNP [dm3] 2L_21867089_SNP [dm6]	A	C	4.235e^-4	0.955	UPSTREAM CR44917 & 1 other INTRON CR44917 EXON CR44919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	20755425	3L_20755425_SNP [dm3] 3L_20762325_SNP [dm6]	G	A	4.239e^-4	0.955	INTERGENIC
2L	16718316	2L_16718316_SNP [dm3] 2L_16718316_SNP [dm6]	T	G	4.240e^-4	0.955	INTRON Cyt-c-d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16719599	2L_16719599_SNP [dm3] 2L_16719599_SNP [dm6]	G	A	4.240e^-4	0.955	UTR_3_PRIME Cyt-c-d UPSTREAM Cyt-c-p	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	16729729	2L_16729729_SNP [dm3] 2L_16729729_SNP [dm6]	T	A	4.240e^-4	0.955	UPSTREAM CG31812 & 1 other DOWNSTREAM CG17996 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx transposable element FlyBase
2L	16740159	2L_16740159_INS [dm3] 2L_16740159_INS [dm6]	T	TTATG	4.240e^-4	0.955	INTRON ChLD3
2L	16746062	2L_16746062_SNP [dm3] 2L_16746062_SNP [dm6]	T	C	4.240e^-4	0.955	DOWNSTREAM CG17912 INTRON CG17912	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16755128	2L_16755128_SNP [dm3] 2L_16755128_SNP [dm6]	G	C	4.240e^-4	0.955	INTRON yellow-b
2L	560500	2L_560500_SNP [dm3] 2L_560500_SNP [dm6]	G	A	4.244e^-4	0.955	UTR_3_PRIME CG2789 UPSTREAM rempA DOWNSTREAM CG11835	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	560512	2L_560512_SNP [dm3] 2L_560512_SNP [dm6]	T	C	4.244e^-4	0.955	UTR_3_PRIME CG2789 UPSTREAM rempA DOWNSTREAM CG11835	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	9307912	2L_9307912_SNP [dm3] 2L_9307912_SNP [dm6]	C	A	4.258e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	11585182	X_11585182_SNP [dm3] X_11691149_SNP [dm6]	G	A	4.262e^-4	0.955	SYNONYMOUS_CODING bif UTR_3_PRIME bif INTRON bif	TF binding site mE1_TFBS_chinmo
3L	6112719	3L_6112719_SNP [dm3] 3L_6119619_SNP [dm6]	T	C	4.262e^-4	0.955	INTRON Ets65A
X	18040257	X_18040257_SNP [dm3] X_18146224_SNP [dm6]	T	G	4.269e^-4	0.955	INTERGENIC
2L	16810976	2L_16810976_SNP [dm3] 2L_16810976_SNP [dm6]	A	C	4.277e^-4	0.955	INTRON CG13280 & 1 other
2R	16927185	2R_16927185_SNP [dm3] 2R_21039680_SNP [dm6]	A	T	4.279e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16637026	2L_16637026_SNP [dm3] 2L_16637026_SNP [dm6]	T	G	4.279e^-4	0.955	INTRON CG42389
3L	7368248	3L_7368248_INS [dm3] 3L_7375148_INS [dm6]	T	TT	4.282e^-4	0.955	INTRON SMSr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17190400	3R_17190400_SNP [dm3] 3R_21364678_SNP [dm6]	A	G	4.287e^-4	0.955	UPSTREAM pre-mod_mdg4_-X & 6 others INTRON mod_mdg4_ & 3 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3L	11671980	3L_11671980_DEL [dm3] 3L_11678880_DEL [dm6]	ACATA	A	4.289e^-4	0.955	INTRON CG32085
3R	26115480	3R_26115480_SNP [dm3] 3R_30289758_SNP [dm6]	A	T	4.291e^-4	0.955	INTRON hdc
X	10260343	X_10260343_DEL [dm3] X_10366310_DEL [dm6]	ATG	A	4.296e^-4	0.955	UPSTREAM l_1_G0289 DOWNSTREAM CG32679 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	9304295	3L_9304295_SNP [dm3] 3L_9311195_SNP [dm6]	T	A	4.299e^-4	0.955	INTERGENIC
2L	16833289	2L_16833289_SNP [dm3] 2L_16833289_SNP [dm6]	C	T	4.299e^-4	0.955	SYNONYMOUS_CODING CG13282
2L	16833321	2L_16833321_SNP [dm3] 2L_16833321_SNP [dm6]	A	T	4.299e^-4	0.955	INTRON CG13282
2L	16833323	2L_16833323_DEL [dm3] 2L_16833323_DEL [dm6]	GG	A	4.299e^-4	0.955	INTRON CG13282
2R	15066067	2R_15066067_SNP [dm3] 2R_19178562_SNP [dm6]	C	A	4.319e^-4	0.955	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1464093	2L_1464093_SNP [dm3] 2L_1464093_SNP [dm6]	C	T	4.321e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	4652891	3L_4652891_SNP [dm3] 3L_4652891_SNP [dm6]	G	A	4.324e^-4	0.955	INTRON axo
2L	18107590	2L_18107590_SNP [dm3] 2L_18107590_SNP [dm6]	G	A	4.329e^-4	0.955	INTERGENIC
3L	20405631	3L_20405631_SNP [dm3] 3L_20412531_SNP [dm6]	A	T	4.335e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18678299	2R_18678299_SNP [dm3] 2R_22790794_SNP [dm6]	C	G	4.336e^-4	0.955	INTRON CG42260
3L	18184528	3L_18184528_SNP [dm3] 3L_18191428_SNP [dm6]	A	T	4.341e^-4	0.955	INTERGENIC
2L	2760828	2L_2760828_SNP [dm3] 2L_2760828_SNP [dm6]	C	T	4.341e^-4	0.955	SYNONYMOUS_CODING Trn-SR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2763533	2L_2763533_SNP [dm3] 2L_2763533_SNP [dm6]	G	A	4.341e^-4	0.955	UTR_3_PRIME Trn-SR & 1 other DOWNSTREAM CG3077
2L	2770444	2L_2770444_SNP [dm3] 2L_2770444_SNP [dm6]	A	T	4.341e^-4	0.955	UPSTREAM colt DOWNSTREAM CG15399 INTRON CG2862	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16764066	2L_16764066_SNP [dm3] 2L_16764066_SNP [dm6]	T	C	4.356e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16764119	2L_16764119_SNP [dm3] 2L_16764119_SNP [dm6]	A	G	4.356e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16766899	2L_16766899_SNP [dm3] 2L_16766899_SNP [dm6]	C	T	4.356e^-4	0.955	UPSTREAM Mhc INTRON Mhc	regulatory region REDfly_CRMs
2L	16769729	2L_16769729_SNP [dm3] 2L_16769729_SNP [dm6]	G	C	4.356e^-4	0.955	INTRON Mhc
2L	12338121	2L_12338121_INS [dm3] 2L_12338121_INS [dm6]	C	CC	4.357e^-4	0.955	UPSTREAM CG31862 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26559845	3R_26559845_SNP [dm3] 3R_30734123_SNP [dm6]	T	C	4.364e^-4	0.955	INTERGENIC
3L	21708318	3L_21708318_SNP [dm3] 3L_21715218_SNP [dm6]	G	T	4.367e^-4	0.955	INTERGENIC
3L	6813728	3L_6813728_SNP [dm3] 3L_6820628_SNP [dm6]	A	G	4.367e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18894655	3R_18894655_SNP [dm3] 3R_23068933_SNP [dm6]	G	T	4.368e^-4	0.955	INTERGENIC
3R	11605423	3R_11605423_SNP [dm3] 3R_15779701_SNP [dm6]	A	C	4.369e^-4	0.955	UPSTREAM CG5614 INTERGENIC
3R	802524	3R_802524_SNP [dm3] 3R_4976802_SNP [dm6]	C	G	4.371e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1665051	X_1665051_DEL [dm3] X_1771018_DEL [dm6]	CGCTTCC	C	4.375e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	17545780	2L_17545780_SNP [dm3] 2L_17545780_SNP [dm6]	T	C	4.378e^-4	0.955	INTERGENIC
2R	15068784	2R_15068784_SNP [dm3] 2R_19181279_SNP [dm6]	A	T	4.380e^-4	0.955	INTRON hppy
2L	16701270	2L_16701270_SNP [dm3] 2L_16701270_SNP [dm6]	A	T	4.394e^-4	0.955	UPSTREAM CR43669 EXON CR43670
2L	16833356	2L_16833356_SNP [dm3] 2L_16833356_SNP [dm6]	C	T	4.399e^-4	0.955	INTRON CG13282
X	13197140	X_13197140_SNP [dm3] X_13303107_SNP [dm6]	T	A	4.403e^-4	0.955	UPSTREAM CG1764 & 2 others INTERGENIC
2L	13312323	2L_13312323_SNP [dm3] 2L_13312323_SNP [dm6]	A	C	4.409e^-4	0.955	INTRON CG43778
3L	9189740	3L_9189740_SNP [dm3] 3L_9196640_SNP [dm6]	G	A	4.412e^-4	0.955	INTERGENIC
2L	7788242	2L_7788242_SNP [dm3] 2L_7788242_SNP [dm6]	A	G	4.419e^-4	0.955	SYNONYMOUS_CODING CG7149
2R	10069421	2R_10069421_SNP [dm3] 2R_14181916_SNP [dm6]	T	A	4.433e^-4	0.955	UTR_3_PRIME cg
2L	4218418	2L_4218418_SNP [dm3] 2L_4218418_SNP [dm6]	A	T	4.441e^-4	0.955	INTRON ft
2L	16764108	2L_16764108_SNP [dm3] 2L_16764108_SNP [dm6]	A	C	4.444e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	2416241	2R_2416241_SNP [dm3] 2R_6528736_SNP [dm6]	C	T	4.447e^-4	0.955	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17293507	2R_17293507_INS [dm3] 2R_21406002_INS [dm6]	A	ACA	4.450e^-4	0.955	INTRON Sdc
3L	16509097	3L_16509097_SNP [dm3] 3L_16515997_SNP [dm6]	G	C	4.451e^-4	0.955	INTRON CG43373
X	16272954	X_16272954_SNP [dm3] X_16378921_SNP [dm6]	A	C	4.458e^-4	0.955	INTRON Fur2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3004046	X_3004046_SNP [dm3] X_3110013_SNP [dm6]	A	G	4.461e^-4	0.955	INTRON kirre
X	13576239	X_13576239_SNP [dm3] X_13682206_SNP [dm6]	A	G	4.468e^-4	0.955	UPSTREAM CG11158 INTERGENIC
2L	3989735	2L_3989735_INS [dm3] 2L_3989735_INS [dm6]	C	AA	4.481e^-4	0.955	UTR_5_PRIME fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	17238558	3R_17238558_SNP [dm3] 3R_21412836_SNP [dm6]	C	A	4.484e^-4	0.955	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6064874	3L_6064874_SNP [dm3] 3L_6071774_SNP [dm6]	A	T	4.491e^-4	0.955	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	5080221	3L_5080221_SNP [dm3] 3L_5080221_SNP [dm6]	T	A	4.494e^-4	0.955	INTERGENIC
3R	12143274	3R_12143274_SNP [dm3] 3R_16317552_SNP [dm6]	T	C	4.496e^-4	0.955	INTRON Sulf1
X	7628620	X_7628620_DEL [dm3] X_7734587_DEL [dm6]	TT	T	4.501e^-4	0.955	UTR_5_PRIME Pdp UPSTREAM Rab39 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17801565	2L_17801565_SNP [dm3] 2L_17801565_SNP [dm6]	A	T	4.502e^-4	0.955	INTRON CadN2
2L	16709177	2L_16709177_SNP [dm3] 2L_16709177_SNP [dm6]	A	G	4.503e^-4	0.955	INTRON CG31808
3L	10850007	3L_10850007_SNP [dm3] 3L_10856907_SNP [dm6]	C	T	4.505e^-4	0.955	UPSTREAM tna INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	16751366	2L_16751366_SNP [dm3] 2L_16751366_SNP [dm6]	A	T	4.507e^-4	0.955	UTR_3_PRIME CG17912
2R	9030529	2R_9030529_SNP [dm3] 2R_13143024_SNP [dm6]	T	C	4.510e^-4	0.955	UTR_3_PRIME Ack-like DOWNSTREAM Cap-G
2L	4292890	2L_4292890_SNP [dm3] 2L_4292890_SNP [dm6]	G	C	4.513e^-4	0.955	INTRON tutl
3L	5079763	3L_5079763_SNP [dm3] 3L_5079763_SNP [dm6]	A	T	4.513e^-4	0.955	UPSTREAM Con INTERGENIC
2R	6496454	2R_6496454_SNP [dm3] 2R_10608949_SNP [dm6]	C	T	4.513e^-4	0.955	INTRON psq
X	13167082	X_13167082_SNP [dm3] X_13273049_SNP [dm6]	A	G	4.514e^-4	0.955	UPSTREAM HDAC4 INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20151407	X_20151407_SNP [dm3] X_20280380_SNP [dm6]	G	A	4.517e^-4	0.955	INTERGENIC
3R	11492905	3R_11492905_SNP [dm3] 3R_15667183_SNP [dm6]	A	G	4.522e^-4	0.955	UPSTREAM CR43849 INTRON pxb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6620512	3L_6620512_SNP [dm3] 3L_6627412_SNP [dm6]	G	A	4.523e^-4	0.955	INTRON GluRIA
2L	7278953	2L_7278953_SNP [dm3] 2L_7278953_SNP [dm6]	C	T	4.523e^-4	0.955	INTERGENIC
3L	11854253	3L_11854253_SNP [dm3] 3L_11861153_SNP [dm6]	C	T	4.548e^-4	0.955	INTRON CG44837
3L	15376050	3L_15376050_SNP [dm3] 3L_15382950_SNP [dm6]	T	A	4.552e^-4	0.955	INTERGENIC
3L	14729040	3L_14729040_SNP [dm3] 3L_14735940_SNP [dm6]	T	C	4.555e^-4	0.955	INTRON ome	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7456127	2L_7456127_SNP [dm3] 2L_7456127_SNP [dm6]	T	C	4.556e^-4	0.955	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
3L	11314651	3L_11314651_SNP [dm3] 3L_11321551_SNP [dm6]	G	A	4.557e^-4	0.955	NON_SYNONYMOUS_CODING CG6168
X	15180247	X_15180247_SNP [dm3] X_15286214_SNP [dm6]	A	G	4.559e^-4	0.955	INTERGENIC
2L	16743434	2L_16743434_SNP [dm3] 2L_16743434_SNP [dm6]	C	T	4.564e^-4	0.955	UTR_5_PRIME CG17912 UPSTREAM LSm7 DOWNSTREAM ChLD3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22480342	3R_22480342_SNP [dm3] 3R_26654620_SNP [dm6]	C	G	4.565e^-4	0.955	INTRON beat-VII	TF binding site mE1_TFBS_bab1
X	15317677	X_15317677_SNP [dm3] X_15423644_SNP [dm6]	C	T	4.567e^-4	0.955	INTRON Cngl
2L	12044117	2L_12044117_SNP [dm3] 2L_12044117_SNP [dm6]	A	G	4.572e^-4	0.955	UTR_5_PRIME CG6785	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	23906778	3L_23906778_SNP [dm3] 3L_23913678_SNP [dm6]	C	G	4.573e^-4	0.955	INTRON CG40470
3L	21603017	3L_21603017_SNP [dm3] 3L_21609917_SNP [dm6]	G	A	4.578e^-4	0.955	INTRON TfAP-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16161916	X_16161916_SNP [dm3] X_16267883_SNP [dm6]	G	A	4.586e^-4	0.955	INTRON kat80
2L	16626238	2L_16626238_SNP [dm3] 2L_16626238_SNP [dm6]	C	T	4.595e^-4	0.955	INTRON CG42389	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	12602978	X_12602978_SNP [dm3] X_12708945_SNP [dm6]	T	C	4.596e^-4	0.955	DOWNSTREAM CG15725 INTRON Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
3L	13254586	3L_13254586_SNP [dm3] 3L_13261486_SNP [dm6]	C	A	4.597e^-4	0.955	INTRON caps
3L	2731414	3L_2731414_SNP [dm3] 3L_2731414_SNP [dm6]	G	A	4.597e^-4	0.955	INTRON Mrtf
3R	18642907	3R_18642907_SNP [dm3] 3R_22817185_SNP [dm6]	T	A	4.598e^-4	0.955	INTERGENIC
2L	3138984	2L_3138984_SNP [dm3] 2L_3138984_SNP [dm6]	A	G	4.599e^-4	0.955	INTRON toc
X	14035498	X_14035498_SNP [dm3] X_14141465_SNP [dm6]	G	A	4.615e^-4	0.955	UPSTREAM CR44658 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10467686	X_10467686_SNP [dm3] X_10573653_SNP [dm6]	G	T	4.620e^-4	0.955	INTRON spri
2L	16707112	2L_16707112_SNP [dm3] 2L_16707112_SNP [dm6]	A	G	4.627e^-4	0.955	INTRON CG31808
3L	3406898	3L_3406898_SNP [dm3] 3L_3406898_SNP [dm6]	T	G	4.628e^-4	0.955	INTRON sty
3R	17024312	3R_17024312_SNP [dm3] 3R_21198590_SNP [dm6]	C	T	4.629e^-4	0.955	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13191796	3L_13191796_SNP [dm3] 3L_13198696_SNP [dm6]	A	T	4.640e^-4	0.955	INTERGENIC
2L	5101468	2L_5101468_SNP [dm3] 2L_5101468_SNP [dm6]	C	A	4.646e^-4	0.955	INTRON Msp300
3R	20322017	3R_20322017_SNP [dm3] 3R_24496295_SNP [dm6]	C	A	4.648e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15951915	2L_15951915_SNP [dm3] 2L_15951915_SNP [dm6]	A	G	4.650e^-4	0.955	INTRON beat-Ib
3L	9303471	3L_9303471_DEL [dm3] 3L_9310371_DEL [dm6]	CGT	C	4.663e^-4	0.955	INTERGENIC
2L	16812434	2L_16812434_SNP [dm3] 2L_16812434_SNP [dm6]	T	A	4.667e^-4	0.955	INTRON CG13280 & 1 other
3R	10647599	3R_10647599_SNP [dm3] 3R_14821877_SNP [dm6]	C	T	4.671e^-4	0.955	UPSTREAM btsz INTRON btsz
X	21319454	X_21319454_DEL [dm3] X_21448427_DEL [dm6]	TA	G	4.672e^-4	0.955	INTRON CG42343
X	1663717	X_1663717_SNP [dm3] X_1769684_SNP [dm6]	C	A	4.674e^-4	0.955	INTERGENIC
X	8636557	X_8636557_DEL [dm3] X_8742524_DEL [dm6]	AATCATTGGAATCA...	A	4.684e^-4	0.955	INTERGENIC
2L	7456067	2L_7456067_SNP [dm3] 2L_7456067_SNP [dm6]	C	A	4.686e^-4	0.955	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
3L	4912481	3L_4912481_SNP [dm3] 3L_4912481_SNP [dm6]	A	G	4.703e^-4	0.955	INTRON Rh50
3R	16595538	3R_16595538_SNP [dm3] 3R_20769816_SNP [dm6]	G	A	4.705e^-4	0.955	INTRON Syp
2L	4278993	2L_4278993_SNP [dm3] 2L_4278993_SNP [dm6]	G	A	4.707e^-4	0.955	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19415558	3L_19415558_SNP [dm3] 3L_19422458_SNP [dm6]	C	T	4.723e^-4	0.955	DOWNSTREAM CR32205 INTERGENIC	transposable element FlyBase
3R	6506002	3R_6506002_SNP [dm3] 3R_10680280_SNP [dm6]	T	A	4.724e^-4	0.955	INTRON CG14688	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11740111	2R_11740111_DEL [dm3] 2R_15852606_DEL [dm6]	TG	T	4.733e^-4	0.955	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7963036	2L_7963036_SNP [dm3] 2L_7963036_SNP [dm6]	C	G	4.734e^-4	0.955	INTRON Snoo
3L	978061	3L_978061_SNP [dm3] 3L_978061_SNP [dm6]	T	G	4.735e^-4	0.955	INTRON Glut1
2L	16618250	2L_16618250_SNP [dm3] 2L_16618250_SNP [dm6]	C	G	4.737e^-4	0.955	INTRON CG42389
2L	16701981	2L_16701981_SNP [dm3] 2L_16701981_SNP [dm6]	C	G	4.744e^-4	0.955	EXON CR43670	TF binding site mE1_TFBS_sens
3R	17051977	3R_17051977_SNP [dm3] 3R_21226255_SNP [dm6]	T	C	4.745e^-4	0.955	SYNONYMOUS_CODING Nelf-A	TF binding site mE1_TFBS_cad
X	18742601	X_18742601_DEL [dm3] X_18848568_DEL [dm6]	CATGCC	C	4.766e^-4	0.955	UPSTREAM CG34422 & 1 other INTRON CG34422
2L	18051712	2L_18051712_SNP [dm3] 2L_18051712_SNP [dm6]	C	T	4.776e^-4	0.955	INTRON rdo
3R	25646157	3R_25646157_SNP [dm3] 3R_29820435_SNP [dm6]	A	C	4.787e^-4	0.955	INTRON neo
2L	7788215	2L_7788215_SNP [dm3] 2L_7788215_SNP [dm6]	T	A	4.790e^-4	0.955	SYNONYMOUS_CODING CG7149
3L	21103611	3L_21103611_SNP [dm3] 3L_21110511_SNP [dm6]	A	G	4.793e^-4	0.955	INTRON ko	regulatory region REDfly_CRMs
3L	12659176	3L_12659176_SNP [dm3] 3L_12666076_SNP [dm6]	A	C	4.795e^-4	0.955	INTERGENIC
2L	13276266	2L_13276266_SNP [dm3] 2L_13276266_SNP [dm6]	G	A	4.797e^-4	0.955	SYNONYMOUS_CODING CG44085 UTR_3_PRIME CG44085	TF binding site BDTNP1_TFBS_twi
3L	21223868	3L_21223868_SNP [dm3] 3L_21230768_SNP [dm6]	A	C	4.797e^-4	0.955	INTRON Eip78C
2L	9164131	2L_9164131_SNP [dm3] 2L_9164131_SNP [dm6]	C	T	4.799e^-4	0.955	UPSTREAM CG13108 DOWNSTREAM CG32982 INTERGENIC	TF binding site mE1_TFBS_cad
3R	10647595	3R_10647595_SNP [dm3] 3R_14821873_SNP [dm6]	C	T	4.806e^-4	0.955	UPSTREAM btsz INTRON btsz
3L	13253100	3L_13253100_SNP [dm3] 3L_13260000_SNP [dm6]	A	T	4.813e^-4	0.955	INTRON caps
2L	11253625	2L_11253625_DEL [dm3] 2L_11253625_DEL [dm6]	AA	A	4.818e^-4	0.955	INTRON ab
3R	22634081	3R_22634081_SNP [dm3] 3R_26808359_SNP [dm6]	G	A	4.821e^-4	0.955	INTRON Tl
3R	20329199	3R_20329199_SNP [dm3] 3R_24503477_SNP [dm6]	C	T	4.835e^-4	0.955	INTERGENIC
2R	16915283	2R_16915283_SNP [dm3] 2R_21027778_SNP [dm6]	G	A	4.837e^-4	0.955	INTERGENIC
2L	3101893	2L_3101893_SNP [dm3] 2L_3101893_SNP [dm6]	T	A	4.839e^-4	0.955	INTRON toc
3R	22034558	3R_22034558_SNP [dm3] 3R_26208836_SNP [dm6]	G	A	4.857e^-4	0.955	INTRON CR44320
2L	4132525	2L_4132525_SNP [dm3] 2L_4132525_SNP [dm6]	C	T	4.867e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10637435	3R_10637435_SNP [dm3] 3R_14811713_SNP [dm6]	G	A	4.869e^-4	0.955	UPSTREAM btsz INTRON btsz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	860546	2L_860546_SNP [dm3] 2L_860546_SNP [dm6]	G	T	4.887e^-4	0.955	INTRON CG13950	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	1036362	2L_1036362_SNP [dm3] 2L_1036362_SNP [dm6]	C	A	4.901e^-4	0.955	UPSTREAM CG4415 INTRON IA-2
2R	6960285	2R_6960285_SNP [dm3] 2R_11072780_SNP [dm6]	A	T	4.903e^-4	0.955	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20354549	X_20354549_SNP [dm3] X_20483522_SNP [dm6]	A	G	4.917e^-4	0.955	INTRON RhoGAP19D
3L	6620538	3L_6620538_SNP [dm3] 3L_6627438_SNP [dm6]	C	T	4.920e^-4	0.955	INTRON GluRIA
2L	2770038	2L_2770038_INS [dm3] 2L_2770038_INS [dm6]	T	TG	4.923e^-4	0.955	UTR_5_PRIME colt UPSTREAM CG2862 DOWNSTREAM CG15399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18426792	3L_18426792_SNP [dm3] 3L_18433692_SNP [dm6]	C	T	4.928e^-4	0.955	INTERGENIC
2L	19051054	2L_19051054_SNP [dm3] 2L_19051054_SNP [dm6]	A	C	4.930e^-4	0.955	UPSTREAM Rpn3 INTRON l_2_37Bb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	22365789	X_22365789_DEL [dm3] X_22963953_DEL [dm6]	ACTAA	A	4.941e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15376052	3L_15376052_SNP [dm3] 3L_15382952_SNP [dm6]	T	A	4.942e^-4	0.955	INTERGENIC
2L	1789369	2L_1789369_SNP [dm3] 2L_1789369_SNP [dm6]	T	C	4.945e^-4	0.955	SYNONYMOUS_CODING Gr22d
3R	22634200	3R_22634200_SNP [dm3] 3R_26808478_SNP [dm6]	A	T	4.948e^-4	0.955	INTRON Tl
2L	11253037	2L_11253037_SNP [dm3] 2L_11253037_SNP [dm6]	G	A	4.952e^-4	0.955	INTRON ab
2L	7788095	2L_7788095_SNP [dm3] 2L_7788095_SNP [dm6]	C	T	4.963e^-4	0.955	SPLICE_SITE_REGION CG7149 INTRON CG7149
2L	7788118	2L_7788118_SNP [dm3] 2L_7788118_SNP [dm6]	G	A	4.963e^-4	0.955	INTRON CG7149
3L	6064871	3L_6064871_SNP [dm3] 3L_6071771_SNP [dm6]	A	T	4.973e^-4	0.955	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	9304348	3L_9304348_SNP [dm3] 3L_9311248_SNP [dm6]	A	T	4.975e^-4	0.955	INTERGENIC
2L	16706638	2L_16706638_SNP [dm3] 2L_16706638_SNP [dm6]	G	A	4.986e^-4	0.955	INTRON CG31808
2L	3142358	2L_3142358_SNP [dm3] 2L_3142358_SNP [dm6]	A	T	4.990e^-4	0.955	INTRON toc
2L	10032640	2L_10032640_SNP [dm3] 2L_10032640_SNP [dm6]	A	C	4.993e^-4	0.955	UPSTREAM obst-B INTERGENIC	TF binding site mE1_TFBS_Trl
2L	18176974	2L_18176974_SNP [dm3] 2L_18176974_SNP [dm6]	C	T	5.001e^-4	0.955	INTRON CG42750
3L	13418004	3L_13418004_SNP [dm3] 3L_13424904_SNP [dm6]	C	T	5.009e^-4	0.955	NON_SYNONYMOUS_CODING CG14106 UPSTREAM CG33263 DOWNSTREAM CG14105	TF binding site mE1_TFBS_cad
3R	22534278	3R_22534278_SNP [dm3] 3R_26708556_SNP [dm6]	C	T	5.015e^-4	0.955	INTRON amon
2L	16706127	2L_16706127_SNP [dm3] 2L_16706127_SNP [dm6]	T	A	5.016e^-4	0.955	INTRON CG31808
2L	16707478	2L_16707478_SNP [dm3] 2L_16707478_SNP [dm6]	T	G	5.016e^-4	0.955	INTRON CG31808
2L	16709169	2L_16709169_DEL [dm3] 2L_16709169_DEL [dm6]	AAA	T	5.016e^-4	0.955	INTRON CG31808
2L	16709173	2L_16709173_SNP [dm3] 2L_16709173_SNP [dm6]	G	T	5.016e^-4	0.955	INTRON CG31808
2L	16709176	2L_16709176_SNP [dm3] 2L_16709176_SNP [dm6]	C	A	5.016e^-4	0.955	INTRON CG31808
2L	16711153	2L_16711153_SNP [dm3] 2L_16711153_SNP [dm6]	G	A	5.016e^-4	0.955	INTRON CG31808	TF binding site mE1_TFBS_inv
2L	7287372	2L_7287372_SNP [dm3] 2L_7287372_SNP [dm6]	A	G	5.017e^-4	0.955	INTERGENIC
2L	15155025	2L_15155025_SNP [dm3] 2L_15155025_SNP [dm6]	T	A	5.017e^-4	0.955	INTERGENIC
2R	4079326	2R_4079326_SNP [dm3] 2R_8191821_SNP [dm6]	A	T	5.025e^-4	0.955	INTRON LRP1
2L	16653029	2L_16653029_DEL [dm3] 2L_16653029_DEL [dm6]	CAAGTTAAAGTG...	C	5.034e^-4	0.955	INTRON CG42389
3R	13301693	3R_13301693_SNP [dm3] 3R_17475971_SNP [dm6]	C	T	5.044e^-4	0.955	INTRON Dscam3
2R	19112785	2R_19112785_SNP [dm3] 2R_23225262_SNP [dm6]	A	C	5.048e^-4	0.955	INTERGENIC
3L	3898746	3L_3898746_SNP [dm3] 3L_3898746_SNP [dm6]	T	A	5.081e^-4	0.955	SYNONYMOUS_CODING Ccz1 DOWNSTREAM Ubi-p63E	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17515450	2R_17515450_SNP [dm3] 2R_21627945_SNP [dm6]	G	A	5.090e^-4	0.955	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16699827	2L_16699827_SNP [dm3] 2L_16699827_SNP [dm6]	C	G	5.091e^-4	0.955	UTR_3_PRIME grp DOWNSTREAM mir-9b & 1 other
2R	7050630	2R_7050630_SNP [dm3] 2R_11163125_SNP [dm6]	A	G	5.095e^-4	0.955	INTRON shn & 1 other
3L	20155266	3L_20155266_SNP [dm3] 3L_20162166_SNP [dm6]	C	T	5.100e^-4	0.955	INTRON CG42674
3L	5080159	3L_5080159_SNP [dm3] 3L_5080159_SNP [dm6]	T	A	5.101e^-4	0.955	INTERGENIC
2L	3144705	2L_3144705_SNP [dm3] 2L_3144705_SNP [dm6]	G	T	5.116e^-4	0.955	UTR_5_PRIME toc DOWNSTREAM CG12400	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	11298188	2R_11298188_SNP [dm3] 2R_15410683_SNP [dm6]	C	T	5.134e^-4	0.955	INTRON CG43729
2L	16706481	2L_16706481_SNP [dm3] 2L_16706481_SNP [dm6]	A	G	5.134e^-4	0.955	INTRON CG31808
3L	12179487	3L_12179487_SNP [dm3] 3L_12186387_SNP [dm6]	T	A	5.135e^-4	0.955	INTRON CG6910
3L	12180074	3L_12180074_SNP [dm3] 3L_12186974_SNP [dm6]	T	C	5.135e^-4	0.955	SYNONYMOUS_CODING CG6910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2747273	2L_2747273_SNP [dm3] 2L_2747273_SNP [dm6]	T	C	5.140e^-4	0.955	DOWNSTREAM Cwc25 INTRON Pgk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2747307	2L_2747307_SNP [dm3] 2L_2747307_SNP [dm6]	C	T	5.140e^-4	0.955	SPLICE_SITE_REGION Pgk DOWNSTREAM Cwc25 INTRON Pgk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14040688	3R_14040688_SNP [dm3] 3R_18214966_SNP [dm6]	C	T	5.148e^-4	0.955	UTR_3_PRIME CG7985	TF binding site mE1_TFBS_cad
2L	7405984	2L_7405984_SNP [dm3] 2L_7405984_SNP [dm6]	T	C	5.152e^-4	0.955	INTRON CG5177
2L	4036961	2L_4036961_DEL [dm3] 2L_4036961_DEL [dm6]	TCCATATAA	T	5.162e^-4	0.955	INTRON ed
3R	26872985	3R_26872985_SNP [dm3] 3R_31047263_SNP [dm6]	C	A	5.171e^-4	0.955	DOWNSTREAM CanA1 INTERGENIC
2L	16807875	2L_16807875_SNP [dm3] 2L_16807875_SNP [dm6]	A	G	5.190e^-4	0.955	INTRON CG13280 & 1 other

By genomic position
Variant impact
Gene name

IscU_CT phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results