DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.769e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1255 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10029474	2L_10029474_INS [dm3] 2L_10029474_INS [dm6]	A	AA	9.974e^-4	0.706	DOWNSTREAM CG13127 INTERGENIC
2L	10054971	2L_10054971_SNP [dm3] 2L_10054971_SNP [dm6]	C	A	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Cpr31A DOWNSTREAM CR44875	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10062402	2L_10062402_SNP [dm3] 2L_10062402_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Spn31A
2L	10062459	2L_10062459_SNP [dm3] 2L_10062459_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON Spn31A
2L	10062460	2L_10062460_DEL [dm3] 2L_10062460_DEL [dm6]	ATCAT	A	9.974e^-4	0.706	INTRON Spn31A
2L	10062466	2L_10062466_SNP [dm3] 2L_10062466_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Spn31A
2L	10062550	2L_10062550_SNP [dm3] 2L_10062550_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON Spn31A
2L	10063954	2L_10063954_SNP [dm3] 2L_10063954_SNP [dm6]	A	C	9.974e^-4	0.706	DOWNSTREAM CG44153 & 1 other INTERGENIC
2L	10075423	2L_10075423_SNP [dm3] 2L_10075423_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG44153
2L	10080850	2L_10080850_SNP [dm3] 2L_10080850_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG44153
2L	10086847	2L_10086847_SNP [dm3] 2L_10086847_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG44153
2L	10092944	2L_10092944_SNP [dm3] 2L_10092944_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CG13133 INTRON CG44153
2L	10119403	2L_10119403_SNP [dm3] 2L_10119403_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG44153 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	10120687	2L_10120687_SNP [dm3] 2L_10120687_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON CG44153 & 1 other
2L	10120716	2L_10120716_SNP [dm3] 2L_10120716_SNP [dm6]	A	G	9.974e^-4	0.706	SPLICE_SITE_REGION CG34109 INTRON CG44153 & 1 other
2L	10121223	2L_10121223_SNP [dm3] 2L_10121223_SNP [dm6]	A	T	9.974e^-4	0.706	DOWNSTREAM CG13135 INTRON CG44153 & 1 other
2L	10127650	2L_10127650_SNP [dm3] 2L_10127650_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON CG44153
2L	10180185	2L_10180185_DEL [dm3] 2L_10180185_DEL [dm6]	TT	T	9.974e^-4	0.706	UTR_5_PRIME CG44153	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10180900	2L_10180900_DEL [dm3] 2L_10180900_DEL [dm6]	TT	T	9.974e^-4	0.706	UPSTREAM CG44153 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10347263	2L_10347263_SNP [dm3] 2L_10347263_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG5022 DOWNSTREAM CG34367	TF binding site mE1_TFBS_cad
2L	10359977	2L_10359977_SNP [dm3] 2L_10359977_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Cand1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10367257	2L_10367257_SNP [dm3] 2L_10367257_SNP [dm6]	G	A	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG5056 DOWNSTREAM lft & 1 other	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	10369573	2L_10369573_SNP [dm3] 2L_10369573_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10424144	2L_10424144_SNP [dm3] 2L_10424144_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG5168	TF binding site mE1_TFBS_HSA
2L	10452634	2L_10452634_INS [dm3] 2L_10452634_INS [dm6]	T	TT	9.974e^-4	0.706	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
2L	10519370	2L_10519370_SNP [dm3] 2L_10519370_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM Lrr47 INTERGENIC
2L	10519382	2L_10519382_SNP [dm3] 2L_10519382_SNP [dm6]	G	C	9.974e^-4	0.706	DOWNSTREAM Lrr47 INTERGENIC
2L	10519441	2L_10519441_SNP [dm3] 2L_10519441_SNP [dm6]	A	T	9.974e^-4	0.706	DOWNSTREAM Lrr47 INTERGENIC
2L	10519468	2L_10519468_SNP [dm3] 2L_10519468_SNP [dm6]	A	T	9.974e^-4	0.706	DOWNSTREAM Lrr47 INTERGENIC
2L	10553084	2L_10553084_SNP [dm3] 2L_10553084_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON Trim9	TF binding site mE1_TFBS_HSA
2L	10570308	2L_10570308_SNP [dm3] 2L_10570308_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Trim9
2L	10574826	2L_10574826_SNP [dm3] 2L_10574826_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON Trim9
2L	10581244	2L_10581244_SNP [dm3] 2L_10581244_SNP [dm6]	T	C	9.974e^-4	0.706	DOWNSTREAM CG34160 INTRON Trim9 & 1 other
2L	10614434	2L_10614434_SNP [dm3] 2L_10614434_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10672633	2L_10672633_SNP [dm3] 2L_10672633_SNP [dm6]	T	G	9.974e^-4	0.706	INTERGENIC
2L	10683725	2L_10683725_SNP [dm3] 2L_10683725_SNP [dm6]	T	C	9.974e^-4	0.706	UTR_3_PRIME CG7299 DOWNSTREAM CG7299
2L	10707204	2L_10707204_SNP [dm3] 2L_10707204_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON Lip2	TF binding site mE1_TFBS_inv
2L	10707288	2L_10707288_SNP [dm3] 2L_10707288_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Lip2	TF binding site mE1_TFBS_inv
2L	10728519	2L_10728519_SNP [dm3] 2L_10728519_SNP [dm6]	A	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG6431 UPSTREAM CG6443	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10733491	2L_10733491_SNP [dm3] 2L_10733491_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING Nup107 DOWNSTREAM Dpy-30L1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10771641	2L_10771641_SNP [dm3] 2L_10771641_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM CG31869 & 1 other INTERGENIC
2L	10780515	2L_10780515_SNP [dm3] 2L_10780515_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG31869
2L	10782134	2L_10782134_SNP [dm3] 2L_10782134_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG31869
2L	10792117	2L_10792117_SNP [dm3] 2L_10792117_SNP [dm6]	A	C	9.974e^-4	0.706	DOWNSTREAM CG31870 INTRON CG31869
2L	10793291	2L_10793291_SNP [dm3] 2L_10793291_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG31869
2L	10793297	2L_10793297_SNP [dm3] 2L_10793297_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CG31869
2L	10795325	2L_10795325_SNP [dm3] 2L_10795325_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG31869	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10795731	2L_10795731_SNP [dm3] 2L_10795731_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CG31869	TF binding site mE1_TFBS_inv
2L	10801325	2L_10801325_SNP [dm3] 2L_10801325_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CG31869 DOWNSTREAM CR44581 INTERGENIC
2L	10816756	2L_10816756_SNP [dm3] 2L_10816756_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Nos
2L	10860001	2L_10860001_SNP [dm3] 2L_10860001_SNP [dm6]	G	A	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10860335	2L_10860335_SNP [dm3] 2L_10860335_SNP [dm6]	C	T	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Stam	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10897997	2L_10897997_SNP [dm3] 2L_10897997_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2L	10898036	2L_10898036_SNP [dm3] 2L_10898036_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2L	10898281	2L_10898281_SNP [dm3] 2L_10898281_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC
2L	10905150	2L_10905150_SNP [dm3] 2L_10905150_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	10912877	2L_10912877_SNP [dm3] 2L_10912877_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	10929110	2L_10929110_SNP [dm3] 2L_10929110_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON dpr2
2L	10929248	2L_10929248_SNP [dm3] 2L_10929248_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON dpr2
2L	1094105	2L_1094105_SNP [dm3] 2L_1094105_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CG4629
2L	10972807	2L_10972807_SNP [dm3] 2L_10972807_SNP [dm6]	A	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG16743 DOWNSTREAM YL-1 & 1 other
2L	10994129	2L_10994129_INS [dm3] 2L_10994129_INS [dm6]	A	AA	9.974e^-4	0.706	UTR_3_PRIME CG16833 INTRON CG16833
2L	11017608	2L_11017608_SNP [dm3] 2L_11017608_SNP [dm6]	C	T	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG14913 INTRON Samuel
2L	11017636	2L_11017636_SNP [dm3] 2L_11017636_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG14913 INTRON Samuel
2L	11080932	2L_11080932_SNP [dm3] 2L_11080932_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON AstC
2L	11193864	2L_11193864_SNP [dm3] 2L_11193864_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	11231977	2L_11231977_SNP [dm3] 2L_11231977_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON ab
2L	11234129	2L_11234129_SNP [dm3] 2L_11234129_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM snoRNA:Me18S-G642 & 1 other INTRON ab	TF binding site mE1_TFBS_cnc
2L	11267228	2L_11267228_SNP [dm3] 2L_11267228_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING cmet	TF binding site mE1_TFBS_sens
2L	11349845	2L_11349845_SNP [dm3] 2L_11349845_SNP [dm6]	C	G	9.974e^-4	0.706	INTERGENIC	regulatory region REDfly_CRMs
2L	11423716	2L_11423716_SNP [dm3] 2L_11423716_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	11426949	2L_11426949_SNP [dm3] 2L_11426949_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	11537002	2L_11537002_SNP [dm3] 2L_11537002_SNP [dm6]	A	T	9.974e^-4	0.706	DOWNSTREAM CG43438 INTERGENIC
2L	11636734	2L_11636734_SNP [dm3] 2L_11636734_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	11637728	2L_11637728_SNP [dm3] 2L_11637728_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	11639483	2L_11639483_SNP [dm3] 2L_11639483_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	11655692	2L_11655692_SNP [dm3] 2L_11655692_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	11657723	2L_11657723_SNP [dm3] 2L_11657723_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG43167
2L	11858634	2L_11858634_DEL [dm3] 2L_11858634_DEL [dm6]	CC	T	9.974e^-4	0.706	INTRON Pde1c
2L	11858695	2L_11858695_SNP [dm3] 2L_11858695_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Pde1c
2L	11858730	2L_11858730_SNP [dm3] 2L_11858730_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON Pde1c
2L	11858754	2L_11858754_SNP [dm3] 2L_11858754_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON Pde1c
2L	11858973	2L_11858973_SNP [dm3] 2L_11858973_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING Pde1c INTRON Pde1c
2L	11860258	2L_11860258_SNP [dm3] 2L_11860258_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Pde1c
2L	11860261	2L_11860261_SNP [dm3] 2L_11860261_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Pde1c
2L	11863342	2L_11863342_SNP [dm3] 2L_11863342_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Pde1c
2L	11863473	2L_11863473_SNP [dm3] 2L_11863473_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON Pde1c
2L	11863599	2L_11863599_SNP [dm3] 2L_11863599_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Pde1c
2L	11863954	2L_11863954_SNP [dm3] 2L_11863954_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON Pde1c
2L	11915746	2L_11915746_SNP [dm3] 2L_11915746_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Pde1c
2L	11915823	2L_11915823_DEL [dm3] 2L_11915823_DEL [dm6]	ATA	A	9.974e^-4	0.706	INTRON Pde1c
2L	11934072	2L_11934072_SNP [dm3] 2L_11934072_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM Or33a INTERGENIC
2L	11934079	2L_11934079_SNP [dm3] 2L_11934079_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM Or33a INTERGENIC
2L	12024921	2L_12024921_SNP [dm3] 2L_12024921_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON CR44587
2L	12050603	2L_12050603_SNP [dm3] 2L_12050603_SNP [dm6]	G	A	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG14945	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12056931	2L_12056931_SNP [dm3] 2L_12056931_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING RpL7-like UTR_5_PRIME CG34164 UPSTREAM JhI-21 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12057051	2L_12057051_SNP [dm3] 2L_12057051_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING RpL7-like UTR_5_PRIME CG34164 UPSTREAM CG34164	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	12060077	2L_12060077_SNP [dm3] 2L_12060077_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING Rab3-GAP
2L	12060095	2L_12060095_SNP [dm3] 2L_12060095_SNP [dm6]	G	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Rab3-GAP
2L	12060105	2L_12060105_SNP [dm3] 2L_12060105_SNP [dm6]	A	G	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Rab3-GAP
2L	1207693	2L_1207693_SNP [dm3] 2L_1207693_SNP [dm6]	T	G	9.974e^-4	0.706	INTERGENIC
2L	12082426	2L_12082426_SNP [dm3] 2L_12082426_SNP [dm6]	G	T	9.974e^-4	0.706	UPSTREAM CR44590 DOWNSTREAM prd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12082811	2L_12082811_SNP [dm3] 2L_12082811_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM CR44590 DOWNSTREAM prd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12082917	2L_12082917_SNP [dm3] 2L_12082917_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM CR44590 DOWNSTREAM prd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12148316	2L_12148316_SNP [dm3] 2L_12148316_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CG31760
2L	12159385	2L_12159385_SNP [dm3] 2L_12159385_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG31760	TF binding site BDTNP1_TFBS_dl
2L	12180113	2L_12180113_SNP [dm3] 2L_12180113_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON aret
2L	12184112	2L_12184112_SNP [dm3] 2L_12184112_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON aret
2L	12270240	2L_12270240_SNP [dm3] 2L_12270240_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM aret INTRON aret
2L	12395584	2L_12395584_SNP [dm3] 2L_12395584_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON bru-2
2L	12395594	2L_12395594_SNP [dm3] 2L_12395594_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON bru-2
2L	12414079	2L_12414079_SNP [dm3] 2L_12414079_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON vir-1
2L	12414099	2L_12414099_SNP [dm3] 2L_12414099_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON vir-1
2L	12414110	2L_12414110_SNP [dm3] 2L_12414110_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON vir-1
2L	12414128	2L_12414128_SNP [dm3] 2L_12414128_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON vir-1
2L	12457085	2L_12457085_SNP [dm3] 2L_12457085_SNP [dm6]	C	T	9.974e^-4	0.706	UTR_3_PRIME bun DOWNSTREAM bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12460913	2L_12460913_SNP [dm3] 2L_12460913_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_5_PRIME bun UPSTREAM mir-967 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12514977	2L_12514977_SNP [dm3] 2L_12514977_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON bun
2L	12523989	2L_12523989_SNP [dm3] 2L_12523989_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON bun
2L	12553946	2L_12553946_SNP [dm3] 2L_12553946_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	1257416	2L_1257416_SNP [dm3] 2L_1257416_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON robo3
2L	1257420	2L_1257420_SNP [dm3] 2L_1257420_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON robo3
2L	1257447	2L_1257447_SNP [dm3] 2L_1257447_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON robo3
2L	12623811	2L_12623811_INS [dm3] 2L_12623811_INS [dm6]	C	CCAACCCCAC	9.974e^-4	0.706	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12623814	2L_12623814_SNP [dm3] 2L_12623814_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Ref2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12694286	2L_12694286_SNP [dm3] 2L_12694286_SNP [dm6]	A	T	9.974e^-4	0.706	UPSTREAM PICK1 DOWNSTREAM CG6153 INTRON CG5780
2L	1270413	2L_1270413_DEL [dm3] 2L_1270413_DEL [dm6]	ACCC	T	9.974e^-4	0.706	INTRON robo3
2L	1276469	2L_1276469_SNP [dm3] 2L_1276469_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON robo3
2L	1276501	2L_1276501_SNP [dm3] 2L_1276501_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON robo3
2L	1276502	2L_1276502_SNP [dm3] 2L_1276502_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON robo3
2L	12984524	2L_12984524_SNP [dm3] 2L_12984524_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12984591	2L_12984591_SNP [dm3] 2L_12984591_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	12986816	2L_12986816_SNP [dm3] 2L_12986816_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12995154	2L_12995154_INS [dm3] 2L_12995154_INS [dm6]	G	GTTAATAAATCAAAAAAAGA...	9.974e^-4	0.706	INTRON CG12404
2L	12995192	2L_12995192_SNP [dm3] 2L_12995192_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG12404
2L	13041284	2L_13041284_DEL [dm3] 2L_13041284_DEL [dm6]	CAGCCGATGAC...	C	9.974e^-4	0.706	INTRON CG9932
2L	13048272	2L_13048272_SNP [dm3] 2L_13048272_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG9932
2L	13050749	2L_13050749_SNP [dm3] 2L_13050749_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON CG9932
2L	13050984	2L_13050984_SNP [dm3] 2L_13050984_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG9932
2L	13121664	2L_13121664_SNP [dm3] 2L_13121664_SNP [dm6]	G	C	9.974e^-4	0.706	DOWNSTREAM CG43050 INTERGENIC
2L	13280078	2L_13280078_SNP [dm3] 2L_13280078_SNP [dm6]	A	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13280079	2L_13280079_SNP [dm3] 2L_13280079_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13280462	2L_13280462_SNP [dm3] 2L_13280462_SNP [dm6]	C	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG44085 INTRON CG44085
2L	13280471	2L_13280471_SNP [dm3] 2L_13280471_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG44085 INTRON CG44085
2L	13280635	2L_13280635_SNP [dm3] 2L_13280635_SNP [dm6]	A	G	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13280774	2L_13280774_SNP [dm3] 2L_13280774_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13339116	2L_13339116_SNP [dm3] 2L_13339116_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	13340883	2L_13340883_INS [dm3] 2L_13340883_INS [dm6]	G	GGG	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	13343439	2L_13343439_SNP [dm3] 2L_13343439_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	13445125	2L_13445125_SNP [dm3] 2L_13445125_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG9267 INTRON CG42784	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	13489081	2L_13489081_SNP [dm3] 2L_13489081_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON CG42784
2L	13538797	2L_13538797_SNP [dm3] 2L_13538797_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON B4
2L	13538805	2L_13538805_SNP [dm3] 2L_13538805_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON B4
2L	13551235	2L_13551235_DEL [dm3] 2L_13551235_DEL [dm6]	TTGGAATA	T	9.974e^-4	0.706	UTR_5_PRIME kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13589305	2L_13589305_DEL [dm3] 2L_13589305_DEL [dm6]	TT	T	9.974e^-4	0.706	INTRON kuz
2L	13601044	2L_13601044_SNP [dm3] 2L_13601044_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON kuz
2L	13603445	2L_13603445_SNP [dm3] 2L_13603445_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON kuz
2L	13699332	2L_13699332_SNP [dm3] 2L_13699332_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG31814
2L	13699346	2L_13699346_SNP [dm3] 2L_13699346_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG31814
2L	13743469	2L_13743469_SNP [dm3] 2L_13743469_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	13743475	2L_13743475_MNP [dm3] 2L_13743475_MNP [dm6]	CTC	TCG	9.974e^-4	0.706	INTERGENIC
2L	13743481	2L_13743481_SNP [dm3] 2L_13743481_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	13743482	2L_13743482_SNP [dm3] 2L_13743482_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	13743486	2L_13743486_SNP [dm3] 2L_13743486_SNP [dm6]	C	G	9.974e^-4	0.706	INTERGENIC
2L	13743493	2L_13743493_SNP [dm3] 2L_13743493_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	13743494	2L_13743494_SNP [dm3] 2L_13743494_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	13743496	2L_13743496_SNP [dm3] 2L_13743496_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	13743497	2L_13743497_SNP [dm3] 2L_13743497_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	13743501	2L_13743501_INS [dm3] 2L_13743501_INS [dm6]	A	AA	9.974e^-4	0.706	INTERGENIC
2L	13743593	2L_13743593_SNP [dm3] 2L_13743593_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC
2L	13743600	2L_13743600_SNP [dm3] 2L_13743600_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	13743601	2L_13743601_SNP [dm3] 2L_13743601_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	13743622	2L_13743622_SNP [dm3] 2L_13743622_SNP [dm6]	T	G	9.974e^-4	0.706	INTERGENIC
2L	13743632	2L_13743632_SNP [dm3] 2L_13743632_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	13743645	2L_13743645_SNP [dm3] 2L_13743645_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	13743667	2L_13743667_SNP [dm3] 2L_13743667_SNP [dm6]	C	G	9.974e^-4	0.706	INTERGENIC
2L	13743683	2L_13743683_SNP [dm3] 2L_13743683_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	13757968	2L_13757968_SNP [dm3] 2L_13757968_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON TM9SF4
2L	13841632	2L_13841632_SNP [dm3] 2L_13841632_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	13870198	2L_13870198_SNP [dm3] 2L_13870198_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13870199	2L_13870199_SNP [dm3] 2L_13870199_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13980298	2L_13980298_SNP [dm3] 2L_13980298_SNP [dm6]	G	T	9.974e^-4	0.706	DOWNSTREAM Cyp28a5 INTRON NimC2
2L	13980305	2L_13980305_SNP [dm3] 2L_13980305_SNP [dm6]	T	A	9.974e^-4	0.706	DOWNSTREAM Cyp28a5 INTRON NimC2
2L	13980842	2L_13980842_SNP [dm3] 2L_13980842_SNP [dm6]	G	A	9.974e^-4	0.706	NON_SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad
2L	13981180	2L_13981180_SNP [dm3] 2L_13981180_SNP [dm6]	T	G	9.974e^-4	0.706	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13981342	2L_13981342_SNP [dm3] 2L_13981342_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13981375	2L_13981375_SNP [dm3] 2L_13981375_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING NimC2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13988913	2L_13988913_SNP [dm3] 2L_13988913_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON rk
2L	14036606	2L_14036606_SNP [dm3] 2L_14036606_SNP [dm6]	T	A	9.974e^-4	0.706	EXON CR45284
2L	1408872	2L_1408872_SNP [dm3] 2L_1408872_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	14244818	2L_14244818_SNP [dm3] 2L_14244818_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	14244821	2L_14244821_SNP [dm3] 2L_14244821_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	14244822	2L_14244822_SNP [dm3] 2L_14244822_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	14244824	2L_14244824_SNP [dm3] 2L_14244824_SNP [dm6]	G	T	9.974e^-4	0.706	INTERGENIC
2L	14244830	2L_14244830_SNP [dm3] 2L_14244830_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC
2L	14244831	2L_14244831_SNP [dm3] 2L_14244831_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2L	14244834	2L_14244834_SNP [dm3] 2L_14244834_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	14244836	2L_14244836_MNP [dm3] 2L_14244836_MNP [dm6]	TAT	CGA	9.974e^-4	0.706	INTERGENIC
2L	14244842	2L_14244842_SNP [dm3] 2L_14244842_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	14244844	2L_14244844_SNP [dm3] 2L_14244844_SNP [dm6]	T	G	9.974e^-4	0.706	INTERGENIC
2L	14244849	2L_14244849_SNP [dm3] 2L_14244849_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	1429602	2L_1429602_DEL [dm3] 2L_1429602_DEL [dm6]	TA	T	9.974e^-4	0.706	DOWNSTREAM CG43401 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1429648	2L_1429648_SNP [dm3] 2L_1429648_SNP [dm6]	G	A	9.974e^-4	0.706	DOWNSTREAM CG43401 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14345133	2L_14345133_SNP [dm3] 2L_14345133_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING CG33090 DOWNSTREAM Send2	TF binding site mE1_TFBS_sens
2L	14350006	2L_14350006_SNP [dm3] 2L_14350006_SNP [dm6]	A	G	9.974e^-4	0.706	DOWNSTREAM CR44850 INTRON l_2_34Fc
2L	14353528	2L_14353528_SNP [dm3] 2L_14353528_SNP [dm6]	G	T	9.974e^-4	0.706	SYNONYMOUS_CODING l_2_34Fd DOWNSTREAM CG43052	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	14457360	2L_14457360_SNP [dm3] 2L_14457360_SNP [dm6]	T	A	9.974e^-4	0.706	DOWNSTREAM CR44730 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14457362	2L_14457362_SNP [dm3] 2L_14457362_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM CR44730 INTERGENIC	TF binding site mE1_TFBS_cad
2L	14470221	2L_14470221_SNP [dm3] 2L_14470221_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1454523	2L_1454523_SNP [dm3] 2L_1454523_SNP [dm6]	G	T	9.974e^-4	0.706	INTERGENIC
2L	14681381	2L_14681381_SNP [dm3] 2L_14681381_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON osp
2L	14681571	2L_14681571_SNP [dm3] 2L_14681571_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON osp
2L	14685614	2L_14685614_SNP [dm3] 2L_14685614_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON osp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2L	14778250	2L_14778250_SNP [dm3] 2L_14778250_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	14778251	2L_14778251_SNP [dm3] 2L_14778251_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	14778294	2L_14778294_INS [dm3] 2L_14778294_INS [dm6]	A	AT	9.974e^-4	0.706	INTERGENIC
2L	14802560	2L_14802560_SNP [dm3] 2L_14802560_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG33308
2L	14802578	2L_14802578_SNP [dm3] 2L_14802578_SNP [dm6]	C	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG33308
2L	14802611	2L_14802611_SNP [dm3] 2L_14802611_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG33308
2L	14802615	2L_14802615_SNP [dm3] 2L_14802615_SNP [dm6]	G	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG33308
2L	14802634	2L_14802634_SNP [dm3] 2L_14802634_SNP [dm6]	C	T	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG33308
2L	14850288	2L_14850288_SNP [dm3] 2L_14850288_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG15279
2L	1491373	2L_1491373_DEL [dm3] 2L_1491373_DEL [dm6]	AAGA	A	9.974e^-4	0.706	UPSTREAM CG31928 INTERGENIC
2L	1491401	2L_1491401_INS [dm3] 2L_1491401_INS [dm6]	C	CC	9.974e^-4	0.706	UPSTREAM CG31928 INTERGENIC
2L	1491407	2L_1491407_SNP [dm3] 2L_1491407_SNP [dm6]	G	T	9.974e^-4	0.706	UPSTREAM CG31928 INTERGENIC
2L	15029521	2L_15029521_DEL [dm3] 2L_15029521_DEL [dm6]	AA	A	9.974e^-4	0.706	DOWNSTREAM CG33310 INTRON GABA-B-R1
2L	15038084	2L_15038084_SNP [dm3] 2L_15038084_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING CIAPIN1 DOWNSTREAM yellow-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_sens
2L	15064341	2L_15064341_DEL [dm3] 2L_15064341_DEL [dm6]	AGTTTTCA	A	9.974e^-4	0.706	UTR_3_PRIME vig INTRON vas
2L	15147104	2L_15147104_SNP [dm3] 2L_15147104_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15282192	2L_15282192_SNP [dm3] 2L_15282192_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	15287743	2L_15287743_DEL [dm3] 2L_15287743_DEL [dm6]	AA	A	9.974e^-4	0.706	INTERGENIC
2L	15288640	2L_15288640_SNP [dm3] 2L_15288640_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	15288694	2L_15288694_SNP [dm3] 2L_15288694_SNP [dm6]	G	C	9.974e^-4	0.706	INTERGENIC
2L	15324379	2L_15324379_SNP [dm3] 2L_15324379_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	15324387	2L_15324387_SNP [dm3] 2L_15324387_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	15324388	2L_15324388_SNP [dm3] 2L_15324388_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	15324395	2L_15324395_SNP [dm3] 2L_15324395_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	15482728	2L_15482728_SNP [dm3] 2L_15482728_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15508712	2L_15508712_SNP [dm3] 2L_15508712_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	15745747	2L_15745747_SNP [dm3] 2L_15745747_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	15747799	2L_15747799_SNP [dm3] 2L_15747799_SNP [dm6]	A	C	9.974e^-4	0.706	UPSTREAM CR44866 DOWNSTREAM CR44974 INTRON CycE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15747967	2L_15747967_SNP [dm3] 2L_15747967_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_5_PRIME CycE UPSTREAM CR44866 DOWNSTREAM CR44974 INTRON CycE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15754368	2L_15754368_SNP [dm3] 2L_15754368_SNP [dm6]	C	G	9.974e^-4	0.706	SYNONYMOUS_CODING l_2_35Df	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15754377	2L_15754377_SNP [dm3] 2L_15754377_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING l_2_35Df	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15825810	2L_15825810_SNP [dm3] 2L_15825810_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2L	15854825	2L_15854825_SNP [dm3] 2L_15854825_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING Tektin-A DOWNSTREAM CG13243
2L	15901433	2L_15901433_SNP [dm3] 2L_15901433_SNP [dm6]	T	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG31821 UPSTREAM CG31823
2L	15959956	2L_15959956_SNP [dm3] 2L_15959956_SNP [dm6]	G	C	9.974e^-4	0.706	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2L	15959973	2L_15959973_SNP [dm3] 2L_15959973_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2L	15960006	2L_15960006_SNP [dm3] 2L_15960006_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2L	15960063	2L_15960063_SNP [dm3] 2L_15960063_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2L	15960200	2L_15960200_SNP [dm3] 2L_15960200_SNP [dm6]	C	G	9.974e^-4	0.706	UPSTREAM CR43803 DOWNSTREAM CG18063 INTRON beat-Ib
2L	16166261	2L_16166261_SNP [dm3] 2L_16166261_SNP [dm6]	C	T	9.974e^-4	0.706	START_GAINED Ca-alpha1D UTR_5_PRIME Ca-alpha1D
2L	16223704	2L_16223704_SNP [dm3] 2L_16223704_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2L	16387806	2L_16387806_SNP [dm3] 2L_16387806_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	16404682	2L_16404682_SNP [dm3] 2L_16404682_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG5888
2L	16404730	2L_16404730_SNP [dm3] 2L_16404730_SNP [dm6]	C	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG5888
2L	16410036	2L_16410036_SNP [dm3] 2L_16410036_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON CG5888
2L	16445028	2L_16445028_SNP [dm3] 2L_16445028_SNP [dm6]	T	A	9.974e^-4	0.706	UPSTREAM Idgf1 INTRON CG5888	TF binding site BDTNP1_TFBS_da
2L	16448264	2L_16448264_SNP [dm3] 2L_16448264_SNP [dm6]	G	T	9.974e^-4	0.706	UPSTREAM Idgf2 INTRON CG5888 & 1 other	TF binding site mE1_TFBS_Trl
2L	16448298	2L_16448298_SNP [dm3] 2L_16448298_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM Idgf2 INTRON CG5888 & 1 other	TF binding site mE1_TFBS_Trl
2L	16448593	2L_16448593_SNP [dm3] 2L_16448593_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	16448605	2L_16448605_SNP [dm3] 2L_16448605_SNP [dm6]	A	T	9.974e^-4	0.706	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	16448839	2L_16448839_INS [dm3] 2L_16448839_INS [dm6]	C	CTC	9.974e^-4	0.706	UTR_5_PRIME Idgf2 UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	16448869	2L_16448869_SNP [dm3] 2L_16448869_SNP [dm6]	C	A	9.974e^-4	0.706	UTR_5_PRIME Idgf2 UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	16450930	2L_16450930_SNP [dm3] 2L_16450930_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_5_PRIME Idgf3 UPSTREAM Idgf3 DOWNSTREAM Idgf2	TF binding site mE1_TFBS_Trl
2L	16450999	2L_16450999_SNP [dm3] 2L_16450999_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_5_PRIME Idgf3 UPSTREAM Idgf3 DOWNSTREAM Idgf2	TF binding site mE1_TFBS_Trl
2L	16464511	2L_16464511_SNP [dm3] 2L_16464511_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	16471714	2L_16471714_SNP [dm3] 2L_16471714_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON dac
2L	16473315	2L_16473315_SNP [dm3] 2L_16473315_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
2L	16475770	2L_16475770_SNP [dm3] 2L_16475770_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON dac	TF binding site BDTNP1_TFBS_dl
2L	16546705	2L_16546705_SNP [dm3] 2L_16546705_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG42389
2L	16582265	2L_16582265_SNP [dm3] 2L_16582265_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG42389	TF binding site mE1_TFBS_bab1
2L	16582273	2L_16582273_SNP [dm3] 2L_16582273_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG42389	TF binding site mE1_TFBS_bab1
2L	16582298	2L_16582298_SNP [dm3] 2L_16582298_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON CG42389	TF binding site mE1_TFBS_bab1
2L	16582305	2L_16582305_SNP [dm3] 2L_16582305_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG42389	TF binding site mE1_TFBS_bab1
2L	1659181	2L_1659181_INS [dm3] 2L_1659181_INS [dm6]	T	TCT	9.974e^-4	0.706	INTRON chinmo
2L	16618172	2L_16618172_SNP [dm3] 2L_16618172_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG42389
2L	16618254	2L_16618254_SNP [dm3] 2L_16618254_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON CG42389
2L	16618264	2L_16618264_SNP [dm3] 2L_16618264_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON CG42389
2L	16622441	2L_16622441_SNP [dm3] 2L_16622441_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG42389 INTRON CG42389	TF binding site mE1_TFBS_chinmo
2L	16622478	2L_16622478_SNP [dm3] 2L_16622478_SNP [dm6]	C	A	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG42389 INTRON CG42389	TF binding site mE1_TFBS_chinmo
2L	16629796	2L_16629796_INS [dm3] 2L_16629796_INS [dm6]	G	GCCCTCGCATTTCG...	9.974e^-4	0.706	UPSTREAM CR44151 INTRON CG42389
2L	1674577	2L_1674577_SNP [dm3] 2L_1674577_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON chinmo
2L	16843030	2L_16843030_SNP [dm3] 2L_16843030_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_3_PRIME CG13284 DOWNSTREAM CG13284
2L	1696416	2L_1696416_SNP [dm3] 2L_1696416_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING chinmo UTR_3_PRIME chinmo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1719763	2L_1719763_SNP [dm3] 2L_1719763_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON Rim2
2L	17264713	2L_17264713_INS [dm3] 2L_17264713_INS [dm6]	C	CC	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
2L	17264880	2L_17264880_SNP [dm3] 2L_17264880_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
2L	17307395	2L_17307395_SNP [dm3] 2L_17307395_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	17343337	2L_17343337_SNP [dm3] 2L_17343337_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	17343343	2L_17343343_SNP [dm3] 2L_17343343_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	17347290	2L_17347290_SNP [dm3] 2L_17347290_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	1736599	2L_1736599_DEL [dm3] 2L_1736599_DEL [dm6]	AAGTTTTCCCA...	A	9.974e^-4	0.706	UPSTREAM CG17646 INTRON CG17646	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	1750117	2L_1750117_SNP [dm3] 2L_1750117_SNP [dm6]	G	T	9.974e^-4	0.706	UTR_3_PRIME CG17646 DOWNSTREAM CG17712
2L	17587211	2L_17587211_SNP [dm3] 2L_17587211_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM CR44411 INTERGENIC	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
2L	17619907	2L_17619907_SNP [dm3] 2L_17619907_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17619918	2L_17619918_SNP [dm3] 2L_17619918_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17619976	2L_17619976_SNP [dm3] 2L_17619976_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17620247	2L_17620247_SNP [dm3] 2L_17620247_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC
2L	17634277	2L_17634277_SNP [dm3] 2L_17634277_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	17634328	2L_17634328_SNP [dm3] 2L_17634328_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	17634330	2L_17634330_SNP [dm3] 2L_17634330_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	17664940	2L_17664940_SNP [dm3] 2L_17664940_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CadN
2L	17673684	2L_17673684_SNP [dm3] 2L_17673684_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON CadN
2L	17678190	2L_17678190_SNP [dm3] 2L_17678190_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CadN
2L	17683247	2L_17683247_SNP [dm3] 2L_17683247_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON CadN
2L	17700671	2L_17700671_SNP [dm3] 2L_17700671_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON CadN
2L	17700672	2L_17700672_SNP [dm3] 2L_17700672_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CadN
2L	17707095	2L_17707095_SNP [dm3] 2L_17707095_SNP [dm6]	T	C	9.974e^-4	0.706	DOWNSTREAM CG43231 INTRON CadN
2L	17707114	2L_17707114_SNP [dm3] 2L_17707114_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM CG43231 INTRON CadN
2L	17707178	2L_17707178_SNP [dm3] 2L_17707178_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CadN
2L	17707181	2L_17707181_SNP [dm3] 2L_17707181_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CadN
2L	17749244	2L_17749244_SNP [dm3] 2L_17749244_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17768554	2L_17768554_SNP [dm3] 2L_17768554_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CadN
2L	18036806	2L_18036806_SNP [dm3] 2L_18036806_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON rdo
2L	18043131	2L_18043131_SNP [dm3] 2L_18043131_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON rdo
2L	18043132	2L_18043132_INS [dm3] 2L_18043132_INS [dm6]	T	TAC	9.974e^-4	0.706	INTRON rdo
2L	18046123	2L_18046123_SNP [dm3] 2L_18046123_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON rdo
2L	18061622	2L_18061622_SNP [dm3] 2L_18061622_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON rdo
2L	18075070	2L_18075070_SNP [dm3] 2L_18075070_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	18075072	2L_18075072_SNP [dm3] 2L_18075072_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	18075076	2L_18075076_SNP [dm3] 2L_18075076_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	18075077	2L_18075077_SNP [dm3] 2L_18075077_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	18075085	2L_18075085_SNP [dm3] 2L_18075085_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	18075109	2L_18075109_DEL [dm3] 2L_18075109_DEL [dm6]	AGGC	A	9.974e^-4	0.706	INTERGENIC
2L	18075115	2L_18075115_SNP [dm3] 2L_18075115_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	18075118	2L_18075118_SNP [dm3] 2L_18075118_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	18075119	2L_18075119_DEL [dm3] 2L_18075119_DEL [dm6]	TTAA	T	9.974e^-4	0.706	INTERGENIC
2L	18075124	2L_18075124_SNP [dm3] 2L_18075124_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2L	18075126	2L_18075126_SNP [dm3] 2L_18075126_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	18075130	2L_18075130_DEL [dm3] 2L_18075130_DEL [dm6]	TGTCCATCGAATATCC...	A	9.974e^-4	0.706	INTERGENIC
2L	18075737	2L_18075737_SNP [dm3] 2L_18075737_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	18104030	2L_18104030_SNP [dm3] 2L_18104030_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	18189024	2L_18189024_SNP [dm3] 2L_18189024_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON CG42750
2L	18456507	2L_18456507_SNP [dm3] 2L_18456507_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON let-7-C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1852388	2L_1852388_SNP [dm3] 2L_1852388_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON wry
2L	18547238	2L_18547238_SNP [dm3] 2L_18547238_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON Pde11
2L	18586697	2L_18586697_SNP [dm3] 2L_18586697_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON Pde11
2L	18631560	2L_18631560_SNP [dm3] 2L_18631560_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON MESR3
2L	18668510	2L_18668510_SNP [dm3] 2L_18668510_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG43338	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18724791	2L_18724791_SNP [dm3] 2L_18724791_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG10348
2L	18728382	2L_18728382_SNP [dm3] 2L_18728382_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON CG10348
2L	18776117	2L_18776117_SNP [dm3] 2L_18776117_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON ham
2L	1881465	2L_1881465_DEL [dm3] 2L_1881465_DEL [dm6]	TT	C	9.974e^-4	0.706	UTR_5_PRIME CG31663 UPSTREAM CG31663 DOWNSTREAM CG15358
2L	18899875	2L_18899875_SNP [dm3] 2L_18899875_SNP [dm6]	C	T	9.974e^-4	0.706	EXON CR44739
2L	18900524	2L_18900524_SNP [dm3] 2L_18900524_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CR44739 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	18900563	2L_18900563_SNP [dm3] 2L_18900563_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM CR44739 INTERGENIC	TF binding site mE1_TFBS_cnc
2L	18904002	2L_18904002_SNP [dm3] 2L_18904002_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	18920849	2L_18920849_SNP [dm3] 2L_18920849_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON ssp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	18985007	2L_18985007_SNP [dm3] 2L_18985007_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Swip-1	TF binding site BDTNP1_TFBS_twi
2L	19024537	2L_19024537_INS [dm3] 2L_19024537_INS [dm6]	A	ATACAT	9.974e^-4	0.706	UPSTREAM CR43700 DOWNSTREAM CG15172 INTERGENIC
2L	19024564	2L_19024564_SNP [dm3] 2L_19024564_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM CR43700 DOWNSTREAM CG15172 INTERGENIC
2L	19036685	2L_19036685_SNP [dm3] 2L_19036685_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON mib2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	19193946	2L_19193946_SNP [dm3] 2L_19193946_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	19200951	2L_19200951_DEL [dm3] 2L_19200951_DEL [dm6]	TCCTTATGAGTGAGCT...	T	9.974e^-4	0.706	INTRON drl
2L	19201054	2L_19201054_SNP [dm3] 2L_19201054_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON drl
2L	19201055	2L_19201055_SNP [dm3] 2L_19201055_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON drl
2L	19201085	2L_19201085_SNP [dm3] 2L_19201085_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON drl
2L	19202419	2L_19202419_SNP [dm3] 2L_19202419_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON drl	regulatory region REDfly_CRMs
2L	19204090	2L_19204090_SNP [dm3] 2L_19204090_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON drl	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2L	19205663	2L_19205663_DEL [dm3] 2L_19205663_DEL [dm6]	CC	C	9.974e^-4	0.706	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19205677	2L_19205677_SNP [dm3] 2L_19205677_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19205705	2L_19205705_DEL [dm3] 2L_19205705_DEL [dm6]	TT	T	9.974e^-4	0.706	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19206187	2L_19206187_SNP [dm3] 2L_19206187_SNP [dm6]	A	C	9.974e^-4	0.706	SYNONYMOUS_CODING drl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19206196	2L_19206196_SNP [dm3] 2L_19206196_SNP [dm6]	G	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING drl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19206244	2L_19206244_SNP [dm3] 2L_19206244_SNP [dm6]	T	G	9.974e^-4	0.706	SYNONYMOUS_CODING drl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19209061	2L_19209061_SNP [dm3] 2L_19209061_SNP [dm6]	A	T	9.974e^-4	0.706	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19209305	2L_19209305_SNP [dm3] 2L_19209305_SNP [dm6]	G	A	9.974e^-4	0.706	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19209359	2L_19209359_SNP [dm3] 2L_19209359_SNP [dm6]	G	T	9.974e^-4	0.706	DOWNSTREAM drl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19209669	2L_19209669_DEL [dm3] 2L_19209669_DEL [dm6]	TTTAAAAAGCAGCTTTGGCT...	T	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19209835	2L_19209835_DEL [dm3] 2L_19209835_DEL [dm6]	CCAATGCCAC	A	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19211445	2L_19211445_DEL [dm3] 2L_19211445_DEL [dm6]	TC	T	9.974e^-4	0.706	INTERGENIC
2L	19211820	2L_19211820_SNP [dm3] 2L_19211820_SNP [dm6]	G	C	9.974e^-4	0.706	INTERGENIC
2L	19212577	2L_19212577_SNP [dm3] 2L_19212577_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	19212609	2L_19212609_SNP [dm3] 2L_19212609_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_disco mE1_TFBS_HSA
2L	19213980	2L_19213980_SNP [dm3] 2L_19213980_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_sens
2L	19216824	2L_19216824_SNP [dm3] 2L_19216824_SNP [dm6]	T	A	9.974e^-4	0.706	UPSTREAM CR44189 INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2L	19217582	2L_19217582_SNP [dm3] 2L_19217582_SNP [dm6]	A	T	9.974e^-4	0.706	EXON CR44189	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA mE1_TFBS_sens
2L	19225459	2L_19225459_SNP [dm3] 2L_19225459_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	19253421	2L_19253421_SNP [dm3] 2L_19253421_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	19331718	2L_19331718_DEL [dm3] 2L_19331718_DEL [dm6]	ATGGTGGAAGATTGAGAGGG...	A	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1951044	2L_1951044_SNP [dm3] 2L_1951044_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING erm UTR_3_PRIME erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19694362	2L_19694362_SNP [dm3] 2L_19694362_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Lar
2L	19743989	2L_19743989_SNP [dm3] 2L_19743989_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19743998	2L_19743998_SNP [dm3] 2L_19743998_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19756146	2L_19756146_SNP [dm3] 2L_19756146_SNP [dm6]	C	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG10631	TF binding site mE1_TFBS_HSA
2L	19906379	2L_19906379_SNP [dm3] 2L_19906379_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON sick
2L	19906380	2L_19906380_SNP [dm3] 2L_19906380_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON sick
2L	20123557	2L_20123557_SNP [dm3] 2L_20123557_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	20128800	2L_20128800_SNP [dm3] 2L_20128800_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	20135601	2L_20135601_SNP [dm3] 2L_20135601_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CG10651 INTERGENIC
2L	20259776	2L_20259776_SNP [dm3] 2L_20259776_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	20370401	2L_20370401_SNP [dm3] 2L_20370401_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC
2L	20419019	2L_20419019_SNP [dm3] 2L_20419019_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM snoRNA:Psi18S-525d & 5 others DOWNSTREAM snoRNA:Psi18S-525a & 3 others INTRON Arpc2 EXON snoRNA:Psi18S-640b	TF binding site mE1_TFBS_zfh1
2L	20717022	2L_20717022_SNP [dm3] 2L_20717022_SNP [dm6]	G	T	9.974e^-4	0.706	INTERGENIC
2L	20806480	2L_20806480_SNP [dm3] 2L_20806480_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG9328
2L	20920820	2L_20920820_SNP [dm3] 2L_20920820_SNP [dm6]	C	G	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Mtp
2L	2126593	2L_2126593_SNP [dm3] 2L_2126593_SNP [dm6]	T	A	9.974e^-4	0.706	DOWNSTREAM CG4259 INTERGENIC
2L	2126629	2L_2126629_SNP [dm3] 2L_2126629_SNP [dm6]	G	A	9.974e^-4	0.706	DOWNSTREAM CG4259 INTERGENIC
2L	21883619	2L_21883619_SNP [dm3] 2L_21883619_SNP [dm6]	G	C	9.974e^-4	0.706	INTERGENIC
2L	21896546	2L_21896546_SNP [dm3] 2L_21896546_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM CG11629 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	21909882	2L_21909882_SNP [dm3] 2L_21909882_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	21917746	2L_21917746_SNP [dm3] 2L_21917746_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM CG11634 INTRON CG11634
2L	22196637	2L_22196637_SNP [dm3] 2L_22196637_SNP [dm6]	A	T	9.974e^-4	0.706	SYNONYMOUS_CODING Ir40a UTR_5_PRIME Ir40a
2L	2311619	2L_2311619_SNP [dm3] 2L_2311619_SNP [dm6]	C	G	9.974e^-4	0.706	UPSTREAM eys INTRON CG9967	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2345390	2L_2345390_SNP [dm3] 2L_2345390_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG9967 & 1 other
2L	2345998	2L_2345998_SNP [dm3] 2L_2345998_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG9967 & 1 other
2L	2357464	2L_2357464_INS [dm3] 2L_2357464_INS [dm6]	A	ATAATAC	9.974e^-4	0.706	UPSTREAM CG9967 INTRON eys
2L	2398025	2L_2398025_SNP [dm3] 2L_2398025_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON VGlut
2L	2398032	2L_2398032_SNP [dm3] 2L_2398032_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON VGlut
2L	2398033	2L_2398033_SNP [dm3] 2L_2398033_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON VGlut
2L	2398040	2L_2398040_SNP [dm3] 2L_2398040_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON VGlut
2L	2445370	2L_2445370_SNP [dm3] 2L_2445370_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs
2L	2457540	2L_2457540_SNP [dm3] 2L_2457540_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON dpp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2457613	2L_2457613_SNP [dm3] 2L_2457613_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON dpp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2457624	2L_2457624_SNP [dm3] 2L_2457624_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON dpp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2486328	2L_2486328_SNP [dm3] 2L_2486328_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	2492728	2L_2492728_SNP [dm3] 2L_2492728_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM oaf & 1 other INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2492779	2L_2492779_SNP [dm3] 2L_2492779_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM oaf & 1 other INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2508109	2L_2508109_SNP [dm3] 2L_2508109_SNP [dm6]	G	C	9.974e^-4	0.706	UPSTREAM CR44607 INTERGENIC
2L	2550607	2L_2550607_SNP [dm3] 2L_2550607_SNP [dm6]	G	A	9.974e^-4	0.706	DOWNSTREAM CG3515 INTERGENIC
2L	2555935	2L_2555935_SNP [dm3] 2L_2555935_SNP [dm6]	G	C	9.974e^-4	0.706	EXON CR44113
2L	2560405	2L_2560405_INS [dm3] 2L_2560405_INS [dm6]	A	AC	9.974e^-4	0.706	INTERGENIC
2L	2606930	2L_2606930_SNP [dm3] 2L_2606930_SNP [dm6]	T	G	9.974e^-4	0.706	INTERGENIC
2L	2610918	2L_2610918_SNP [dm3] 2L_2610918_SNP [dm6]	C	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG15395	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	2610939	2L_2610939_SNP [dm3] 2L_2610939_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG15395	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	2673400	2L_2673400_INS [dm3] 2L_2673400_INS [dm6]	G	GC	9.974e^-4	0.706	INTERGENIC
2L	2675906	2L_2675906_SNP [dm3] 2L_2675906_SNP [dm6]	T	G	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2675918	2L_2675918_SNP [dm3] 2L_2675918_SNP [dm6]	C	G	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2724243	2L_2724243_SNP [dm3] 2L_2724243_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	2725586	2L_2725586_INS [dm3] 2L_2725586_INS [dm6]	T	TGCCTCAAATGCAAG...	9.974e^-4	0.706	UPSTREAM CG31689 INTERGENIC
2L	2733733	2L_2733733_SNP [dm3] 2L_2733733_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON CG31689
2L	2743316	2L_2743316_SNP [dm3] 2L_2743316_SNP [dm6]	C	T	9.974e^-4	0.706	UTR_3_PRIME Hrs DOWNSTREAM CG9961
2L	2797883	2L_2797883_SNP [dm3] 2L_2797883_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON Syt1 EXON CR43821	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	2804426	2L_2804426_INS [dm3] 2L_2804426_INS [dm6]	G	TA	9.974e^-4	0.706	UPSTREAM daw INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2804532	2L_2804532_SNP [dm3] 2L_2804532_SNP [dm6]	C	G	9.974e^-4	0.706	UPSTREAM daw INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2843132	2L_2843132_SNP [dm3] 2L_2843132_SNP [dm6]	T	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
2L	2919910	2L_2919910_SNP [dm3] 2L_2919910_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON lilli
2L	2922012	2L_2922012_SNP [dm3] 2L_2922012_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON lilli
2L	2922368	2L_2922368_DEL [dm3] 2L_2922368_DEL [dm6]	AA	A	9.974e^-4	0.706	INTRON lilli
2L	2947939	2L_2947939_SNP [dm3] 2L_2947939_SNP [dm6]	A	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_chinmo
2L	2958771	2L_2958771_SNP [dm3] 2L_2958771_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM Rbp9 INTRON Rbp9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2996212	2L_2996212_SNP [dm3] 2L_2996212_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG3558	TF binding site mE1_TFBS_chinmo
2L	3001831	2L_3001831_SNP [dm3] 2L_3001831_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	3051008	2L_3051008_SNP [dm3] 2L_3051008_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo
2L	3051032	2L_3051032_SNP [dm3] 2L_3051032_SNP [dm6]	C	A	9.974e^-4	0.706	SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo
2L	3119009	2L_3119009_SNP [dm3] 2L_3119009_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON toc
2L	3119018	2L_3119018_SNP [dm3] 2L_3119018_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON toc
2L	3120829	2L_3120829_SNP [dm3] 2L_3120829_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON toc
2L	3155548	2L_3155548_SNP [dm3] 2L_3155548_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Mad	TF binding site mE1_TFBS_cad
2L	3261343	2L_3261343_SNP [dm3] 2L_3261343_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM CR45337 DOWNSTREAM CR45338 INTERGENIC
2L	3312064	2L_3312064_SNP [dm3] 2L_3312064_SNP [dm6]	T	A	9.974e^-4	0.706	DOWNSTREAM CG15406 INTRON CG3277
2L	3312066	2L_3312066_INS [dm3] 2L_3312066_INS [dm6]	A	TTTTT	9.974e^-4	0.706	DOWNSTREAM CG15406 INTRON CG3277
2L	3312832	2L_3312832_SNP [dm3] 2L_3312832_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG3277
2L	3312918	2L_3312918_SNP [dm3] 2L_3312918_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG3277
2L	3313582	2L_3313582_DEL [dm3] 2L_3313582_DEL [dm6]	CCGAAGGTTTC...	C	9.974e^-4	0.706	INTRON CG3277
2L	3313614	2L_3313614_SNP [dm3] 2L_3313614_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG3277
2L	3313626	2L_3313626_SNP [dm3] 2L_3313626_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG3277
2L	3313647	2L_3313647_SNP [dm3] 2L_3313647_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG3277
2L	3313648	2L_3313648_SNP [dm3] 2L_3313648_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG3277
2L	3313653	2L_3313653_SNP [dm3] 2L_3313653_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CG3277
2L	3313663	2L_3313663_SNP [dm3] 2L_3313663_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG3277
2L	3313674	2L_3313674_SNP [dm3] 2L_3313674_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON CG3277
2L	3313678	2L_3313678_INS [dm3] 2L_3313678_INS [dm6]	A	AACTGCA	9.974e^-4	0.706	INTRON CG3277
2L	3313690	2L_3313690_SNP [dm3] 2L_3313690_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG3277
2L	3313692	2L_3313692_SNP [dm3] 2L_3313692_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG3277
2L	3313694	2L_3313694_SNP [dm3] 2L_3313694_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG3277
2L	3313704	2L_3313704_SNP [dm3] 2L_3313704_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG3277
2L	3313714	2L_3313714_SNP [dm3] 2L_3313714_SNP [dm6]	T	C	9.974e^-4	0.706	SPLICE_SITE_REGION CG3277 INTRON CG3277
2L	3313838	2L_3313838_SNP [dm3] 2L_3313838_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON CG3277
2L	3313867	2L_3313867_SNP [dm3] 2L_3313867_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG3277
2L	3313890	2L_3313890_SNP [dm3] 2L_3313890_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON CG3277
2L	3313892	2L_3313892_SNP [dm3] 2L_3313892_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG3277
2L	3377729	2L_3377729_SNP [dm3] 2L_3377729_SNP [dm6]	C	A	9.974e^-4	0.706	SYNONYMOUS_CODING Ptpa UPSTREAM CG9662	TF binding site mE1_TFBS_sens
2L	3378508	2L_3378508_SNP [dm3] 2L_3378508_SNP [dm6]	A	T	9.974e^-4	0.706	UTR_3_PRIME Ptpa
2L	3378521	2L_3378521_SNP [dm3] 2L_3378521_SNP [dm6]	G	A	9.974e^-4	0.706	UTR_3_PRIME Ptpa
2L	3401675	2L_3401675_SNP [dm3] 2L_3401675_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2L	3401678	2L_3401678_SNP [dm3] 2L_3401678_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	3461396	2L_3461396_SNP [dm3] 2L_3461396_SNP [dm6]	G	T	9.974e^-4	0.706	DOWNSTREAM msl-2 INTRON CG3246	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	3538073	2L_3538073_SNP [dm3] 2L_3538073_SNP [dm6]	T	C	9.974e^-4	0.706	EXON CR44308	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Kr mE1_TFBS_Trl
2L	35460	2L_35460_SNP [dm3] 2L_35460_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Cda5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3555846	2L_3555846_SNP [dm3] 2L_3555846_SNP [dm6]	G	C	9.974e^-4	0.706	INTERGENIC
2L	35621	2L_35621_SNP [dm3] 2L_35621_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON Cda5	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	35647	2L_35647_DEL [dm3] 2L_35647_DEL [dm6]	AGGA	A	9.974e^-4	0.706	INTRON Cda5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3569666	2L_3569666_SNP [dm3] 2L_3569666_SNP [dm6]	T	G	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	3569667	2L_3569667_SNP [dm3] 2L_3569667_SNP [dm6]	T	G	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	3626238	2L_3626238_SNP [dm3] 2L_3626238_SNP [dm6]	T	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING for INTRON for	TF binding site mE1_TFBS_chinmo
2L	36330	2L_36330_SNP [dm3] 2L_36330_SNP [dm6]	A	T	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	36696	2L_36696_SNP [dm3] 2L_36696_SNP [dm6]	A	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Cda5 INTRON Cda5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3671260	2L_3671260_SNP [dm3] 2L_3671260_SNP [dm6]	G	T	9.974e^-4	0.706	UPSTREAM Sfp24Bc INTRON CG34340
2L	3685433	2L_3685433_SNP [dm3] 2L_3685433_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON CG34340
2L	3713221	2L_3713221_SNP [dm3] 2L_3713221_SNP [dm6]	A	C	9.974e^-4	0.706	UPSTREAM CG2818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3715081	2L_3715081_SNP [dm3] 2L_3715081_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG2818	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3766495	2L_3766495_SNP [dm3] 2L_3766495_SNP [dm6]	A	G	9.974e^-4	0.706	DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
2L	3766500	2L_3766500_SNP [dm3] 2L_3766500_SNP [dm6]	T	G	9.974e^-4	0.706	DOWNSTREAM CG43703 INTRON CG43707	TF binding site mE1_TFBS_Trl
2L	3832995	2L_3832995_SNP [dm3] 2L_3832995_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	3833064	2L_3833064_SNP [dm3] 2L_3833064_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3843633	2L_3843633_SNP [dm3] 2L_3843633_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3883422	2L_3883422_DEL [dm3] 2L_3883422_DEL [dm6]	GCGGTG	G	9.974e^-4	0.706	INTRON capu
2L	3885897	2L_3885897_SNP [dm3] 2L_3885897_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3901537	2L_3901537_DEL [dm3] 2L_3901537_DEL [dm6]	TT	T	9.974e^-4	0.706	INTRON capu
2L	39397	2L_39397_SNP [dm3] 2L_39397_SNP [dm6]	A	C	9.974e^-4	0.706	SYNONYMOUS_CODING Cda5
2L	3940776	2L_3940776_SNP [dm3] 2L_3940776_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON fred
2L	3941764	2L_3941764_SNP [dm3] 2L_3941764_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON fred
2L	3942555	2L_3942555_SNP [dm3] 2L_3942555_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON fred
2L	3964595	2L_3964595_SNP [dm3] 2L_3964595_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON fred
2L	3981393	2L_3981393_SNP [dm3] 2L_3981393_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON fred
2L	39826	2L_39826_SNP [dm3] 2L_39826_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING Cda5
2L	4024268	2L_4024268_SNP [dm3] 2L_4024268_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	40750	2L_40750_SNP [dm3] 2L_40750_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Cda5
2L	4117678	2L_4117678_SNP [dm3] 2L_4117678_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	4210145	2L_4210145_SNP [dm3] 2L_4210145_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4286011	2L_4286011_SNP [dm3] 2L_4286011_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON tutl	TF binding site BDTNP1_TFBS_dl
2L	4286118	2L_4286118_SNP [dm3] 2L_4286118_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON tutl	TF binding site BDTNP1_TFBS_dl
2L	4297855	2L_4297855_DEL [dm3] 2L_4297855_DEL [dm6]	TGGAT	T	9.974e^-4	0.706	INTRON tutl
2L	4301848	2L_4301848_SNP [dm3] 2L_4301848_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4325229	2L_4325229_SNP [dm3] 2L_4325229_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON CG16857
2L	4328083	2L_4328083_SNP [dm3] 2L_4328083_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG16857
2L	4336656	2L_4336656_SNP [dm3] 2L_4336656_SNP [dm6]	T	C	9.974e^-4	0.706	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4412730	2L_4412730_SNP [dm3] 2L_4412730_SNP [dm6]	A	T	9.974e^-4	0.706	DOWNSTREAM CG43055 INTRON CG15431
2L	4422332	2L_4422332_SNP [dm3] 2L_4422332_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON CG15431
2L	444985	2L_444985_SNP [dm3] 2L_444985_SNP [dm6]	A	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING ex	TF binding site mE1_TFBS_sens
2L	4460185	2L_4460185_SNP [dm3] 2L_4460185_SNP [dm6]	C	A	9.974e^-4	0.706	UPSTREAM mRpL27 INTRON CG15435	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4489288	2L_4489288_SNP [dm3] 2L_4489288_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4489303	2L_4489303_SNP [dm3] 2L_4489303_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4514463	2L_4514463_SNP [dm3] 2L_4514463_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON dp
2L	4514490	2L_4514490_SNP [dm3] 2L_4514490_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON dp
2L	4517795	2L_4517795_SNP [dm3] 2L_4517795_SNP [dm6]	T	G	9.974e^-4	0.706	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4517954	2L_4517954_SNP [dm3] 2L_4517954_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4549226	2L_4549226_INS [dm3] 2L_4549226_INS [dm6]	T	TT	9.974e^-4	0.706	INTRON dp
2L	4549815	2L_4549815_INS [dm3] 2L_4549815_INS [dm6]	A	AA	9.974e^-4	0.706	INTRON dp
2L	4567618	2L_4567618_SNP [dm3] 2L_4567618_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4568673	2L_4568673_SNP [dm3] 2L_4568673_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4594587	2L_4594587_SNP [dm3] 2L_4594587_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4672084	2L_4672084_SNP [dm3] 2L_4672084_SNP [dm6]	G	C	9.974e^-4	0.706	INTERGENIC
2L	4672790	2L_4672790_SNP [dm3] 2L_4672790_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2L	4674109	2L_4674109_SNP [dm3] 2L_4674109_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	4674395	2L_4674395_SNP [dm3] 2L_4674395_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4754860	2L_4754860_INS [dm3] 2L_4754860_INS [dm6]	C	CACA	9.974e^-4	0.706	INTRON CG15630
2L	4754862	2L_4754862_SNP [dm3] 2L_4754862_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG15630
2L	4754893	2L_4754893_SNP [dm3] 2L_4754893_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON CG15630
2L	4754904	2L_4754904_INS [dm3] 2L_4754904_INS [dm6]	G	GAAAAAGACCTGGG...	9.974e^-4	0.706	INTRON CG15630
2L	4755019	2L_4755019_SNP [dm3] 2L_4755019_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON CG15630
2L	4755215	2L_4755215_SNP [dm3] 2L_4755215_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG15630
2L	4770893	2L_4770893_SNP [dm3] 2L_4770893_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG15630
2L	4771663	2L_4771663_SNP [dm3] 2L_4771663_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG15630
2L	4798366	2L_4798366_SNP [dm3] 2L_4798366_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Clect27
2L	4829727	2L_4829727_SNP [dm3] 2L_4829727_SNP [dm6]	G	C	9.974e^-4	0.706	SYNONYMOUS_CODING CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4829733	2L_4829733_SNP [dm3] 2L_4829733_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4829751	2L_4829751_SNP [dm3] 2L_4829751_SNP [dm6]	G	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4923541	2L_4923541_SNP [dm3] 2L_4923541_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON hoe1
2L	4941826	2L_4941826_SNP [dm3] 2L_4941826_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941834	2L_4941834_SNP [dm3] 2L_4941834_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941847	2L_4941847_SNP [dm3] 2L_4941847_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941857	2L_4941857_SNP [dm3] 2L_4941857_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941869	2L_4941869_SNP [dm3] 2L_4941869_SNP [dm6]	T	A	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941883	2L_4941883_SNP [dm3] 2L_4941883_SNP [dm6]	C	G	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941909	2L_4941909_SNP [dm3] 2L_4941909_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941917	2L_4941917_SNP [dm3] 2L_4941917_SNP [dm6]	C	A	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941919	2L_4941919_SNP [dm3] 2L_4941919_SNP [dm6]	G	C	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941948	2L_4941948_DEL [dm3] 2L_4941948_DEL [dm6]	AATGTGTACAGCCATAAAC...	A	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941968	2L_4941968_SNP [dm3] 2L_4941968_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941969	2L_4941969_SNP [dm3] 2L_4941969_SNP [dm6]	A	C	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941973	2L_4941973_DEL [dm3] 2L_4941973_DEL [dm6]	CTA	C	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941977	2L_4941977_SNP [dm3] 2L_4941977_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941981	2L_4941981_SNP [dm3] 2L_4941981_SNP [dm6]	G	C	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4941988	2L_4941988_SNP [dm3] 2L_4941988_SNP [dm6]	G	T	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4942028	2L_4942028_SNP [dm3] 2L_4942028_SNP [dm6]	A	T	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4942035	2L_4942035_SNP [dm3] 2L_4942035_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4942063	2L_4942063_SNP [dm3] 2L_4942063_SNP [dm6]	T	G	9.974e^-4	0.706	UPSTREAM CG14044 DOWNSTREAM Sgs1 INTERGENIC
2L	4958319	2L_4958319_SNP [dm3] 2L_4958319_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CG34124 DOWNSTREAM Marcal1 INTERGENIC
2L	4983153	2L_4983153_SNP [dm3] 2L_4983153_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG34126
2L	5024277	2L_5024277_SNP [dm3] 2L_5024277_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON vkg	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	5024317	2L_5024317_SNP [dm3] 2L_5024317_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON vkg	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	5024319	2L_5024319_SNP [dm3] 2L_5024319_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON vkg	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	5074257	2L_5074257_SNP [dm3] 2L_5074257_SNP [dm6]	A	T	9.974e^-4	0.706	SYNONYMOUS_CODING pgant5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5074552	2L_5074552_SNP [dm3] 2L_5074552_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON pgant5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5074687	2L_5074687_SNP [dm3] 2L_5074687_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON pgant5
2L	5074691	2L_5074691_SNP [dm3] 2L_5074691_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON pgant5
2L	5116226	2L_5116226_SNP [dm3] 2L_5116226_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON Msp300
2L	5247449	2L_5247449_SNP [dm3] 2L_5247449_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON tkv
2L	5247540	2L_5247540_SNP [dm3] 2L_5247540_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON tkv
2L	5247541	2L_5247541_SNP [dm3] 2L_5247541_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON tkv
2L	5247571	2L_5247571_SNP [dm3] 2L_5247571_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON tkv
2L	5332460	2L_5332460_SNP [dm3] 2L_5332460_SNP [dm6]	T	A	9.974e^-4	0.706	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5332484	2L_5332484_SNP [dm3] 2L_5332484_SNP [dm6]	G	A	9.974e^-4	0.706	UTR_5_PRIME fusl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5336302	2L_5336302_SNP [dm3] 2L_5336302_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM fusl INTRON fusl
2L	5428933	2L_5428933_SNP [dm3] 2L_5428933_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	5428958	2L_5428958_SNP [dm3] 2L_5428958_SNP [dm6]	G	T	9.974e^-4	0.706	INTERGENIC
2L	5449419	2L_5449419_SNP [dm3] 2L_5449419_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	5457645	2L_5457645_SNP [dm3] 2L_5457645_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	5465722	2L_5465722_SNP [dm3] 2L_5465722_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	5465742	2L_5465742_SNP [dm3] 2L_5465742_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2L	5481129	2L_5481129_SNP [dm3] 2L_5481129_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	5481132	2L_5481132_DEL [dm3] 2L_5481132_DEL [dm6]	AA	G	9.974e^-4	0.706	INTERGENIC
2L	5481140	2L_5481140_SNP [dm3] 2L_5481140_SNP [dm6]	G	C	9.974e^-4	0.706	INTERGENIC
2L	5522490	2L_5522490_SNP [dm3] 2L_5522490_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON CG7371
2L	5561911	2L_5561911_DEL [dm3] 2L_5561911_DEL [dm6]	ATACTTTAAGA...	A	9.974e^-4	0.706	INTRON GluRIIB
2L	563759	2L_563759_SNP [dm3] 2L_563759_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_5_PRIME CG11835 UPSTREAM CG2794 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	563760	2L_563760_SNP [dm3] 2L_563760_SNP [dm6]	T	C	9.974e^-4	0.706	UTR_5_PRIME CG11835 UPSTREAM CG2794 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5665797	2L_5665797_SNP [dm3] 2L_5665797_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON Hsp60C
2L	5665968	2L_5665968_SNP [dm3] 2L_5665968_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON Hsp60C
2L	5705057	2L_5705057_SNP [dm3] 2L_5705057_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	5705080	2L_5705080_SNP [dm3] 2L_5705080_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2L	5705091	2L_5705091_SNP [dm3] 2L_5705091_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2L	5705097	2L_5705097_SNP [dm3] 2L_5705097_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2L	5705100	2L_5705100_SNP [dm3] 2L_5705100_SNP [dm6]	T	G	9.974e^-4	0.706	INTERGENIC
2L	5705102	2L_5705102_SNP [dm3] 2L_5705102_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	5732647	2L_5732647_SNP [dm3] 2L_5732647_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG11030
2L	5732648	2L_5732648_SNP [dm3] 2L_5732648_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG11030
2L	5732690	2L_5732690_SNP [dm3] 2L_5732690_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM CG11147 INTRON CG11030
2L	5732699	2L_5732699_SNP [dm3] 2L_5732699_SNP [dm6]	T	A	9.974e^-4	0.706	DOWNSTREAM CG11147 INTRON CG11030
2L	5732810	2L_5732810_DEL [dm3] 2L_5732810_DEL [dm6]	TTATCCCTT	T	9.974e^-4	0.706	DOWNSTREAM CG11147 INTRON CG11030
2L	5763115	2L_5763115_SNP [dm3] 2L_5763115_SNP [dm6]	T	G	9.974e^-4	0.706	SYNONYMOUS_CODING obst-E DOWNSTREAM CG11030 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5826935	2L_5826935_SNP [dm3] 2L_5826935_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON TrissinR
2L	5827396	2L_5827396_SNP [dm3] 2L_5827396_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON TrissinR
2L	5827443	2L_5827443_SNP [dm3] 2L_5827443_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON TrissinR
2L	5838959	2L_5838959_SNP [dm3] 2L_5838959_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON TrissinR
2L	5886219	2L_5886219_SNP [dm3] 2L_5886219_SNP [dm6]	C	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG9029 DOWNSTREAM CG43185 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5899114	2L_5899114_SNP [dm3] 2L_5899114_SNP [dm6]	G	T	9.974e^-4	0.706	DOWNSTREAM CR44579 INTERGENIC
2L	592783	2L_592783_SNP [dm3] 2L_592783_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON Gsc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5960622	2L_5960622_SNP [dm3] 2L_5960622_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM Vm26Aa INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
2L	5960629	2L_5960629_SNP [dm3] 2L_5960629_SNP [dm6]	A	C	9.974e^-4	0.706	UPSTREAM Vm26Aa INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_cad
2L	5997217	2L_5997217_SNP [dm3] 2L_5997217_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM lid INTRON lid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6000012	2L_6000012_SNP [dm3] 2L_6000012_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM Tsp26A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	602728	2L_602728_SNP [dm3] 2L_602728_SNP [dm6]	A	C	9.974e^-4	0.706	UPSTREAM CG13689 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	602729	2L_602729_SNP [dm3] 2L_602729_SNP [dm6]	A	C	9.974e^-4	0.706	UPSTREAM CG13689 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2L	6118480	2L_6118480_SNP [dm3] 2L_6118480_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM CG31642 INTRON stai	TF binding site BDTNP1_TFBS_sna
2L	6118905	2L_6118905_SNP [dm3] 2L_6118905_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG31642 INTRON stai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6118913	2L_6118913_SNP [dm3] 2L_6118913_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG31642 INTRON stai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	6147305	2L_6147305_SNP [dm3] 2L_6147305_SNP [dm6]	C	G	9.974e^-4	0.706	INTERGENIC
2L	6147316	2L_6147316_SNP [dm3] 2L_6147316_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	6155678	2L_6155678_SNP [dm3] 2L_6155678_SNP [dm6]	G	C	9.974e^-4	0.706	UPSTREAM CG31639 INTERGENIC
2L	6160358	2L_6160358_SNP [dm3] 2L_6160358_SNP [dm6]	T	G	9.974e^-4	0.706	UPSTREAM CG13989 INTERGENIC	TF binding site mE1_TFBS_inv
2L	6160361	2L_6160361_SNP [dm3] 2L_6160361_SNP [dm6]	G	C	9.974e^-4	0.706	UPSTREAM CG13989 INTERGENIC	TF binding site mE1_TFBS_inv
2L	6161114	2L_6161114_SNP [dm3] 2L_6161114_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_3_PRIME CG13989	TF binding site mE1_TFBS_inv
2L	6186927	2L_6186927_SNP [dm3] 2L_6186927_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG34380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
2L	6186932	2L_6186932_SNP [dm3] 2L_6186932_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON CG34380	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
2L	624580	2L_624580_DEL [dm3] 2L_624580_DEL [dm6]	AAA	C	9.974e^-4	0.706	UPSTREAM lectin-21Ca & 1 other DOWNSTREAM CR44797 INTERGENIC
2L	624628	2L_624628_SNP [dm3] 2L_624628_SNP [dm6]	C	T	9.974e^-4	0.706	UTR_5_PRIME lectin-21Ca UPSTREAM CR44798 DOWNSTREAM CR44797
2L	6247186	2L_6247186_SNP [dm3] 2L_6247186_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6334235	2L_6334235_SNP [dm3] 2L_6334235_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING Pez	TF binding site mE1_TFBS_cad
2L	6341161	2L_6341161_SNP [dm3] 2L_6341161_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM Cpr INTRON Cpr
2L	6379730	2L_6379730_SNP [dm3] 2L_6379730_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG42368
2L	6379910	2L_6379910_SNP [dm3] 2L_6379910_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG42368
2L	6380353	2L_6380353_SNP [dm3] 2L_6380353_SNP [dm6]	A	T	9.974e^-4	0.706	UPSTREAM CG9507 INTRON CG42368
2L	6380378	2L_6380378_SNP [dm3] 2L_6380378_SNP [dm6]	C	G	9.974e^-4	0.706	UPSTREAM CG9507 INTRON CG42368
2L	6380408	2L_6380408_DEL [dm3] 2L_6380408_DEL [dm6]	CCTT	C	9.974e^-4	0.706	UPSTREAM CG9507 INTRON CG42368
2L	6380462	2L_6380462_SNP [dm3] 2L_6380462_SNP [dm6]	C	A	9.974e^-4	0.706	UPSTREAM CG9507 INTRON CG42368
2L	6380516	2L_6380516_SNP [dm3] 2L_6380516_SNP [dm6]	T	G	9.974e^-4	0.706	UPSTREAM CG9507 INTRON CG42368
2L	6380542	2L_6380542_SNP [dm3] 2L_6380542_SNP [dm6]	C	G	9.974e^-4	0.706	UPSTREAM CG9507 INTRON CG42368
2L	6383756	2L_6383756_SNP [dm3] 2L_6383756_SNP [dm6]	C	T	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG42370 DOWNSTREAM CG9507 INTRON CG42368
2L	6389339	2L_6389339_SNP [dm3] 2L_6389339_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG42368	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6389364	2L_6389364_SNP [dm3] 2L_6389364_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG42368	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6390580	2L_6390580_SNP [dm3] 2L_6390580_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG42368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6392870	2L_6392870_SNP [dm3] 2L_6392870_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG42368
2L	6392899	2L_6392899_SNP [dm3] 2L_6392899_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CG42368
2L	6394014	2L_6394014_SNP [dm3] 2L_6394014_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG42368
2L	6394739	2L_6394739_SNP [dm3] 2L_6394739_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON CG42368
2L	6395032	2L_6395032_SNP [dm3] 2L_6395032_SNP [dm6]	T	G	9.974e^-4	0.706	DOWNSTREAM CG42369 INTRON CG42368
2L	6395071	2L_6395071_SNP [dm3] 2L_6395071_SNP [dm6]	A	C	9.974e^-4	0.706	DOWNSTREAM CG42369 INTRON CG42368
2L	6395090	2L_6395090_SNP [dm3] 2L_6395090_SNP [dm6]	T	C	9.974e^-4	0.706	DOWNSTREAM CG42369 INTRON CG42368
2L	6395106	2L_6395106_SNP [dm3] 2L_6395106_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM CG42369 INTRON CG42368
2L	6395115	2L_6395115_INS [dm3] 2L_6395115_INS [dm6]	GT	ACC	9.974e^-4	0.706	DOWNSTREAM CG42369 INTRON CG42368
2L	6395148	2L_6395148_INS [dm3] 2L_6395148_INS [dm6]	T	TT	9.974e^-4	0.706	DOWNSTREAM CG42369 INTRON CG42368
2L	6395152	2L_6395152_SNP [dm3] 2L_6395152_SNP [dm6]	G	A	9.974e^-4	0.706	DOWNSTREAM CG42369 INTRON CG42368
2L	6395312	2L_6395312_SNP [dm3] 2L_6395312_SNP [dm6]	T	C	9.974e^-4	0.706	DOWNSTREAM CG42369 INTRON CG42368
2L	6395780	2L_6395780_SNP [dm3] 2L_6395780_SNP [dm6]	A	C	9.974e^-4	0.706	DOWNSTREAM CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad
2L	6396246	2L_6396246_SNP [dm3] 2L_6396246_SNP [dm6]	G	A	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6396251	2L_6396251_SNP [dm3] 2L_6396251_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6396283	2L_6396283_SNP [dm3] 2L_6396283_SNP [dm6]	T	A	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6396647	2L_6396647_SNP [dm3] 2L_6396647_SNP [dm6]	A	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6396890	2L_6396890_SNP [dm3] 2L_6396890_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6404214	2L_6404214_SNP [dm3] 2L_6404214_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG42368
2L	6404226	2L_6404226_SNP [dm3] 2L_6404226_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON CG42368
2L	640496	2L_640496_SNP [dm3] 2L_640496_SNP [dm6]	T	G	9.974e^-4	0.706	UTR_3_PRIME ds	TF binding site mE1_TFBS_cad
2L	640770	2L_640770_SNP [dm3] 2L_640770_SNP [dm6]	G	A	9.974e^-4	0.706	UTR_3_PRIME ds	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6492613	2L_6492613_SNP [dm3] 2L_6492613_SNP [dm6]	C	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG31638 DOWNSTREAM CG9547	TF binding site mE1_TFBS_cad
2L	6493023	2L_6493023_SNP [dm3] 2L_6493023_SNP [dm6]	G	T	9.974e^-4	0.706	UTR_3_PRIME CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6493039	2L_6493039_SNP [dm3] 2L_6493039_SNP [dm6]	T	G	9.974e^-4	0.706	UTR_3_PRIME CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6493040	2L_6493040_SNP [dm3] 2L_6493040_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_3_PRIME CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6495349	2L_6495349_SNP [dm3] 2L_6495349_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG31638 UPSTREAM CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad
2L	6499550	2L_6499550_SNP [dm3] 2L_6499550_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG31637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6500284	2L_6500284_SNP [dm3] 2L_6500284_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CG31637
2L	6516143	2L_6516143_SNP [dm3] 2L_6516143_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG31637
2L	6525993	2L_6525993_SNP [dm3] 2L_6525993_SNP [dm6]	T	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG31637
2L	6688748	2L_6688748_SNP [dm3] 2L_6688748_SNP [dm6]	A	T	9.974e^-4	0.706	DOWNSTREAM Tsp INTRON Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6688749	2L_6688749_SNP [dm3] 2L_6688749_SNP [dm6]	A	T	9.974e^-4	0.706	DOWNSTREAM Tsp INTRON Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6708530	2L_6708530_SNP [dm3] 2L_6708530_SNP [dm6]	G	T	9.974e^-4	0.706	UTR_5_PRIME Tsp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	671482	2L_671482_SNP [dm3] 2L_671482_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON ds	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6736725	2L_6736725_SNP [dm3] 2L_6736725_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING TTLL3A DOWNSTREAM TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	6775323	2L_6775323_SNP [dm3] 2L_6775323_SNP [dm6]	C	A	9.974e^-4	0.706	UPSTREAM CG17378 INTRON CG17378
2L	6777391	2L_6777391_SNP [dm3] 2L_6777391_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING CG17378	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6822449	2L_6822449_SNP [dm3] 2L_6822449_SNP [dm6]	C	T	9.974e^-4	0.706	UTR_5_PRIME sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6841871	2L_6841871_SNP [dm3] 2L_6841871_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6902627	2L_6902627_SNP [dm3] 2L_6902627_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM mir-932 INTRON Nlg2
2L	6951194	2L_6951194_SNP [dm3] 2L_6951194_SNP [dm6]	A	T	9.974e^-4	0.706	SYNONYMOUS_CODING SA UPSTREAM Gas41	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6951259	2L_6951259_SNP [dm3] 2L_6951259_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON SA	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6963598	2L_6963598_SNP [dm3] 2L_6963598_SNP [dm6]	T	A	9.974e^-4	0.706	UTR_5_PRIME sip2 UPSTREAM Coprox INTRON sip2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	6964314	2L_6964314_SNP [dm3] 2L_6964314_SNP [dm6]	T	A	9.974e^-4	0.706	UPSTREAM Coprox & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	6984290	2L_6984290_SNP [dm3] 2L_6984290_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6984356	2L_6984356_SNP [dm3] 2L_6984356_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6984425	2L_6984425_SNP [dm3] 2L_6984425_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6986557	2L_6986557_SNP [dm3] 2L_6986557_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON uif EXON CR44326
2L	7115975	2L_7115975_SNP [dm3] 2L_7115975_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON Pvf3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7116098	2L_7116098_SNP [dm3] 2L_7116098_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Pvf3	TF binding site mE1_TFBS_sbb
2L	7151373	2L_7151373_SNP [dm3] 2L_7151373_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Pvf3
2L	7192066	2L_7192066_SNP [dm3] 2L_7192066_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG4497	TF binding site mE1_TFBS_inv
2L	7192082	2L_7192082_SNP [dm3] 2L_7192082_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG4497	TF binding site mE1_TFBS_inv
2L	7192424	2L_7192424_SNP [dm3] 2L_7192424_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG4497	TF binding site mE1_TFBS_inv
2L	7192425	2L_7192425_SNP [dm3] 2L_7192425_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG4497	TF binding site mE1_TFBS_inv
2L	7192453	2L_7192453_SNP [dm3] 2L_7192453_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG4497
2L	7193122	2L_7193122_SNP [dm3] 2L_7193122_SNP [dm6]	C	T	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG4497	TF binding site mE1_TFBS_sens
2L	7195840	2L_7195840_SNP [dm3] 2L_7195840_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG4502
2L	7222609	2L_7222609_SNP [dm3] 2L_7222609_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING ico DOWNSTREAM Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7231682	2L_7231682_SNP [dm3] 2L_7231682_SNP [dm6]	T	G	9.974e^-4	0.706	DOWNSTREAM CG43800 INTRON Ndae1
2L	7260464	2L_7260464_SNP [dm3] 2L_7260464_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7260616	2L_7260616_SNP [dm3] 2L_7260616_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7260639	2L_7260639_SNP [dm3] 2L_7260639_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7260645	2L_7260645_SNP [dm3] 2L_7260645_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7260650	2L_7260650_SNP [dm3] 2L_7260650_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON Wnt4	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7261018	2L_7261018_SNP [dm3] 2L_7261018_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON Wnt4
2L	7264594	2L_7264594_SNP [dm3] 2L_7264594_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON Wnt4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7327633	2L_7327633_SNP [dm3] 2L_7327633_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	7328170	2L_7328170_SNP [dm3] 2L_7328170_SNP [dm6]	T	C	9.974e^-4	0.706	DOWNSTREAM CR45304 INTERGENIC
2L	7376039	2L_7376039_SNP [dm3] 2L_7376039_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON Wnt10
2L	7475392	2L_7475392_SNP [dm3] 2L_7475392_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING CG6441 INTRON Ziz
2L	7516526	2L_7516526_SNP [dm3] 2L_7516526_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON RapGAP1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7517554	2L_7517554_SNP [dm3] 2L_7517554_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7518763	2L_7518763_SNP [dm3] 2L_7518763_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	7522956	2L_7522956_SNP [dm3] 2L_7522956_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7523734	2L_7523734_SNP [dm3] 2L_7523734_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON RapGAP1
2L	7539700	2L_7539700_SNP [dm3] 2L_7539700_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7541753	2L_7541753_SNP [dm3] 2L_7541753_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON RapGAP1
2L	7542914	2L_7542914_SNP [dm3] 2L_7542914_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	7543294	2L_7543294_SNP [dm3] 2L_7543294_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	7543405	2L_7543405_SNP [dm3] 2L_7543405_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Kr mE1_TFBS_sens
2L	7547628	2L_7547628_SNP [dm3] 2L_7547628_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON RapGAP1
2L	7547790	2L_7547790_SNP [dm3] 2L_7547790_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON RapGAP1
2L	7553643	2L_7553643_SNP [dm3] 2L_7553643_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON RapGAP1
2L	7569912	2L_7569912_SNP [dm3] 2L_7569912_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7607117	2L_7607117_SNP [dm3] 2L_7607117_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING Cyp4d21
2L	7692286	2L_7692286_SNP [dm3] 2L_7692286_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CG43235 INTRON CG7025	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7694553	2L_7694553_SNP [dm3] 2L_7694553_SNP [dm6]	T	A	9.974e^-4	0.706	SYNONYMOUS_CODING Tep2 DOWNSTREAM CG43235	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7699109	2L_7699109_SNP [dm3] 2L_7699109_SNP [dm6]	G	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Tep2
2L	7710187	2L_7710187_SNP [dm3] 2L_7710187_SNP [dm6]	G	C	9.974e^-4	0.706	SYNONYMOUS_CODING Tep3 UPSTREAM Ntl INTRON CR44990	TF binding site mE1_TFBS_cad
2L	7742477	2L_7742477_SNP [dm3] 2L_7742477_SNP [dm6]	A	C	9.974e^-4	0.706	UPSTREAM Acp1 INTERGENIC
2L	7742791	2L_7742791_SNP [dm3] 2L_7742791_SNP [dm6]	C	A	9.974e^-4	0.706	DOWNSTREAM CG7214 INTERGENIC
2L	7742822	2L_7742822_SNP [dm3] 2L_7742822_SNP [dm6]	A	G	9.974e^-4	0.706	DOWNSTREAM CG7214 INTERGENIC
2L	7750608	2L_7750608_SNP [dm3] 2L_7750608_SNP [dm6]	A	G	9.974e^-4	0.706	INTERGENIC
2L	7754490	2L_7754490_SNP [dm3] 2L_7754490_SNP [dm6]	C	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG7196
2L	7754680	2L_7754680_SNP [dm3] 2L_7754680_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG7196
2L	7754809	2L_7754809_SNP [dm3] 2L_7754809_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON CG7196
2L	7754885	2L_7754885_SNP [dm3] 2L_7754885_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON CG7196
2L	7758093	2L_7758093_SNP [dm3] 2L_7758093_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON CG7196
2L	7758180	2L_7758180_SNP [dm3] 2L_7758180_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG7196	TF binding site mE1_TFBS_HSA
2L	7759546	2L_7759546_SNP [dm3] 2L_7759546_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG7196
2L	7791442	2L_7791442_SNP [dm3] 2L_7791442_SNP [dm6]	A	C	9.974e^-4	0.706	UTR_3_PRIME LKR UPSTREAM CG7149
2L	7794579	2L_7794579_SNP [dm3] 2L_7794579_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON LKR	TF binding site mE1_TFBS_cad
2L	7795469	2L_7795469_SNP [dm3] 2L_7795469_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM CR44825 DOWNSTREAM Herp INTRON LKR
2L	7842391	2L_7842391_INS [dm3] 2L_7842391_INS [dm6]	G	GAAG	9.974e^-4	0.706	INTERGENIC
2L	7901495	2L_7901495_SNP [dm3] 2L_7901495_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Snoo
2L	7901504	2L_7901504_SNP [dm3] 2L_7901504_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON Snoo
2L	7902475	2L_7902475_SNP [dm3] 2L_7902475_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Snoo
2L	7904259	2L_7904259_SNP [dm3] 2L_7904259_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Snoo
2L	7921724	2L_7921724_SNP [dm3] 2L_7921724_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON Snoo
2L	7921740	2L_7921740_SNP [dm3] 2L_7921740_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON Snoo
2L	7921741	2L_7921741_SNP [dm3] 2L_7921741_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Snoo
2L	7940420	2L_7940420_SNP [dm3] 2L_7940420_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
2L	7940426	2L_7940426_SNP [dm3] 2L_7940426_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Snoo	TF binding site BDTNP1_TFBS_dl
2L	7958581	2L_7958581_SNP [dm3] 2L_7958581_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Snoo
2L	8006843	2L_8006843_SNP [dm3] 2L_8006843_SNP [dm6]	T	G	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Spn28Dc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8037886	2L_8037886_SNP [dm3] 2L_8037886_SNP [dm6]	A	C	9.974e^-4	0.706	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_sens
2L	8037901	2L_8037901_SNP [dm3] 2L_8037901_SNP [dm6]	C	A	9.974e^-4	0.706	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_sens
2L	8048143	2L_8048143_SNP [dm3] 2L_8048143_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_sens
2L	8048213	2L_8048213_SNP [dm3] 2L_8048213_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING CG7466	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8064926	2L_8064926_SNP [dm3] 2L_8064926_SNP [dm6]	G	T	9.974e^-4	0.706	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2L	8094212	2L_8094212_SNP [dm3] 2L_8094212_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Bsg	TF binding site BDTNP1_TFBS_twi
2L	8094215	2L_8094215_SNP [dm3] 2L_8094215_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Bsg	TF binding site BDTNP1_TFBS_twi
2L	8104639	2L_8104639_SNP [dm3] 2L_8104639_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	8132581	2L_8132581_SNP [dm3] 2L_8132581_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG8668	TF binding site mE1_TFBS_cad
2L	8174002	2L_8174002_SNP [dm3] 2L_8174002_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8356222	2L_8356222_SNP [dm3] 2L_8356222_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG7627	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8372770	2L_8372770_DEL [dm3] 2L_8372770_DEL [dm6]	TTATTAGTAAATAT...	T	9.974e^-4	0.706	INTRON CG17292	TF binding site mE1_TFBS_HSA
2L	8372853	2L_8372853_SNP [dm3] 2L_8372853_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON CG17292	TF binding site mE1_TFBS_HSA
2L	8372856	2L_8372856_SNP [dm3] 2L_8372856_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG17292	TF binding site mE1_TFBS_HSA
2L	8431869	2L_8431869_SNP [dm3] 2L_8431869_SNP [dm6]	G	A	9.974e^-4	0.706	SPLICE_SITE_REGION grk DOWNSTREAM Akap200 INTRON grk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8440838	2L_8440838_SNP [dm3] 2L_8440838_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING mus201
2L	8449277	2L_8449277_SNP [dm3] 2L_8449277_SNP [dm6]	C	A	9.974e^-4	0.706	NON_SYNONYMOUS_CODING U26 DOWNSTREAM fu12
2L	8468488	2L_8468488_SNP [dm3] 2L_8468488_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON d
2L	865230	2L_865230_SNP [dm3] 2L_865230_SNP [dm6]	A	G	9.974e^-4	0.706	DOWNSTREAM snoRNA:Me28S-U1230 INTRON aru	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	8686018	2L_8686018_SNP [dm3] 2L_8686018_SNP [dm6]	G	T	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686025	2L_8686025_SNP [dm3] 2L_8686025_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686051	2L_8686051_SNP [dm3] 2L_8686051_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686068	2L_8686068_SNP [dm3] 2L_8686068_SNP [dm6]	G	T	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686075	2L_8686075_SNP [dm3] 2L_8686075_SNP [dm6]	T	A	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686076	2L_8686076_SNP [dm3] 2L_8686076_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686089	2L_8686089_SNP [dm3] 2L_8686089_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686145	2L_8686145_SNP [dm3] 2L_8686145_SNP [dm6]	A	T	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686151	2L_8686151_SNP [dm3] 2L_8686151_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686175	2L_8686175_SNP [dm3] 2L_8686175_SNP [dm6]	G	T	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686190	2L_8686190_SNP [dm3] 2L_8686190_SNP [dm6]	A	T	9.974e^-4	0.706	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8963291	2L_8963291_SNP [dm3] 2L_8963291_SNP [dm6]	C	T	9.974e^-4	0.706	SPLICE_SITE_REGION CG32985 UPSTREAM CG9525 INTRON CG32985
2L	9062091	2L_9062091_SNP [dm3] 2L_9062091_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON CG31708
2L	9062140	2L_9062140_SNP [dm3] 2L_9062140_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG31708
2L	9062232	2L_9062232_INS [dm3] 2L_9062232_INS [dm6]	G	GTTCTGCGAGG...	9.974e^-4	0.706	INTRON CG31708
2L	9062240	2L_9062240_SNP [dm3] 2L_9062240_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON CG31708
2L	9062250	2L_9062250_SNP [dm3] 2L_9062250_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON CG31708
2L	9062392	2L_9062392_SNP [dm3] 2L_9062392_SNP [dm6]	C	T	9.974e^-4	0.706	SPLICE_SITE_REGION CG31708 INTRON CG31708
2L	9066032	2L_9066032_SNP [dm3] 2L_9066032_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG31708
2L	9069832	2L_9069832_SNP [dm3] 2L_9069832_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG31708
2L	9069874	2L_9069874_SNP [dm3] 2L_9069874_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG31708
2L	9070183	2L_9070183_SNP [dm3] 2L_9070183_SNP [dm6]	A	G	9.974e^-4	0.706	UPSTREAM CR44483 INTRON CG31708
2L	9107952	2L_9107952_DEL [dm3] 2L_9107952_DEL [dm6]	TGT	T	9.974e^-4	0.706	INTERGENIC
2L	9146233	2L_9146233_SNP [dm3] 2L_9146233_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	921348	2L_921348_SNP [dm3] 2L_921348_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	9267847	2L_9267847_SNP [dm3] 2L_9267847_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON Ggamma30A
2L	9278941	2L_9278941_SNP [dm3] 2L_9278941_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON Ggamma30A	TF binding site mE1_TFBS_chinmo
2L	9282081	2L_9282081_SNP [dm3] 2L_9282081_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Ggamma30A
2L	9286030	2L_9286030_SNP [dm3] 2L_9286030_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON Ggamma30A
2L	9295341	2L_9295341_SNP [dm3] 2L_9295341_SNP [dm6]	A	T	9.974e^-4	0.706	UTR_3_PRIME Ggamma30A
2L	9296720	2L_9296720_INS [dm3] 2L_9296720_INS [dm6]	A	AC	9.974e^-4	0.706	UTR_3_PRIME Ggamma30A
2L	9334912	2L_9334912_SNP [dm3] 2L_9334912_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Eaat1
2L	9347777	2L_9347777_SNP [dm3] 2L_9347777_SNP [dm6]	G	C	9.974e^-4	0.706	DOWNSTREAM CR44802 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	9390845	2L_9390845_SNP [dm3] 2L_9390845_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING Aldh INTRON Shawl	TF binding site mE1_TFBS_chinmo
2L	9485469	2L_9485469_SNP [dm3] 2L_9485469_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9488926	2L_9488926_SNP [dm3] 2L_9488926_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2L	9488930	2L_9488930_SNP [dm3] 2L_9488930_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	9488932	2L_9488932_SNP [dm3] 2L_9488932_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	9488943	2L_9488943_SNP [dm3] 2L_9488943_SNP [dm6]	G	C	9.974e^-4	0.706	INTERGENIC
2L	9489982	2L_9489982_SNP [dm3] 2L_9489982_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	9489983	2L_9489983_SNP [dm3] 2L_9489983_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	962913	2L_962913_SNP [dm3] 2L_962913_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	962938	2L_962938_SNP [dm3] 2L_962938_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	962951	2L_962951_SNP [dm3] 2L_962951_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2L	9657340	2L_9657340_SNP [dm3] 2L_9657340_SNP [dm6]	G	A	9.974e^-4	0.706	UTR_3_PRIME CG33299
2L	9657350	2L_9657350_SNP [dm3] 2L_9657350_SNP [dm6]	A	T	9.974e^-4	0.706	UTR_3_PRIME CG33299
2L	9657369	2L_9657369_SNP [dm3] 2L_9657369_SNP [dm6]	G	T	9.974e^-4	0.706	UTR_3_PRIME CG33299
2L	9657546	2L_9657546_SNP [dm3] 2L_9657546_SNP [dm6]	G	A	9.974e^-4	0.706	DOWNSTREAM CG33299 INTERGENIC
2L	9665695	2L_9665695_SNP [dm3] 2L_9665695_SNP [dm6]	C	A	9.974e^-4	0.706	INTERGENIC
2L	9665704	2L_9665704_SNP [dm3] 2L_9665704_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2L	9665804	2L_9665804_SNP [dm3] 2L_9665804_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC
2L	9680399	2L_9680399_INS [dm3] 2L_9680399_INS [dm6]	C	TT	9.974e^-4	0.706	INTERGENIC
2L	9718112	2L_9718112_SNP [dm3] 2L_9718112_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Nckx30C
2L	9770382	2L_9770382_SNP [dm3] 2L_9770382_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_3_PRIME CG17633 DOWNSTREAM ppk16 INTRON ppk18	TF binding site mE1_TFBS_cad
2L	9772360	2L_9772360_SNP [dm3] 2L_9772360_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING ppk16 DOWNSTREAM ppk11	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9856788	2L_9856788_SNP [dm3] 2L_9856788_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON nAChRalpha6
2L	9857158	2L_9857158_SNP [dm3] 2L_9857158_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON nAChRalpha6
2L	9857162	2L_9857162_SNP [dm3] 2L_9857162_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON nAChRalpha6
2L	9868270	2L_9868270_SNP [dm3] 2L_9868270_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON nAChRalpha6
2L	9868271	2L_9868271_SNP [dm3] 2L_9868271_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON nAChRalpha6
2L	9881798	2L_9881798_SNP [dm3] 2L_9881798_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON nAChRalpha6
2L	9884617	2L_9884617_SNP [dm3] 2L_9884617_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON nAChRalpha6
2L	9886456	2L_9886456_SNP [dm3] 2L_9886456_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CR44701 & 1 other INTERGENIC
2L	9906439	2L_9906439_SNP [dm3] 2L_9906439_SNP [dm6]	C	T	9.974e^-4	0.706	UTR_5_PRIME CG13124	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	9931126	2L_9931126_SNP [dm3] 2L_9931126_SNP [dm6]	C	G	9.974e^-4	0.706	UTR_3_PRIME CG42367 DOWNSTREAM CG42366	TF binding site mE1_TFBS_HSA
2L	9942609	2L_9942609_SNP [dm3] 2L_9942609_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619
2L	9942627	2L_9942627_SNP [dm3] 2L_9942627_SNP [dm6]	G	C	9.974e^-4	0.706	SPLICE_SITE_REGION CG5853 UTR_3_PRIME CG4619 INTRON CG5853
2R	10029932	2R_10029932_SNP [dm3] 2R_14142427_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
2R	10472472	2R_10472472_SNP [dm3] 2R_14584967_SNP [dm6]	G	C	9.974e^-4	0.706	UTR_3_PRIME ttv
2R	10579073	2R_10579073_SNP [dm3] 2R_14691568_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON mspo
2R	10629131	2R_10629131_SNP [dm3] 2R_14741626_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG12858	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10674523	2R_10674523_SNP [dm3] 2R_14787018_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	10680952	2R_10680952_DEL [dm3] 2R_14793447_DEL [dm6]	TCTT	T	9.974e^-4	0.706	INTRON kn	TF binding site BDTNP1_TFBS_twi
2R	10680971	2R_10680971_SNP [dm3] 2R_14793466_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON kn	TF binding site BDTNP1_TFBS_twi
2R	1093740	2R_1093740_DEL [dm3] 2R_5206235_DEL [dm6]	TCCAAAGATATCATT...	T	9.974e^-4	0.706	INTRON Nipped-A	TF binding site mE1_TFBS_inv
2R	1093794	2R_1093794_DEL [dm3] 2R_5206289_DEL [dm6]	ACGA	A	9.974e^-4	0.706	INTRON Nipped-A	TF binding site mE1_TFBS_inv
2R	1093820	2R_1093820_SNP [dm3] 2R_5206315_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON Nipped-A
2R	1093821	2R_1093821_SNP [dm3] 2R_5206316_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON Nipped-A
2R	11241598	2R_11241598_SNP [dm3] 2R_15354093_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON unc-5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	11276179	2R_11276179_SNP [dm3] 2R_15388674_SNP [dm6]	A	G	9.974e^-4	0.706	DOWNSTREAM SRPK INTERGENIC
2R	11276185	2R_11276185_SNP [dm3] 2R_15388680_SNP [dm6]	T	C	9.974e^-4	0.706	DOWNSTREAM SRPK INTERGENIC
2R	11276311	2R_11276311_SNP [dm3] 2R_15388806_SNP [dm6]	A	G	9.974e^-4	0.706	DOWNSTREAM SRPK INTERGENIC
2R	11276925	2R_11276925_SNP [dm3] 2R_15389420_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC
2R	11421341	2R_11421341_SNP [dm3] 2R_15533836_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG30471
2R	11421595	2R_11421595_SNP [dm3] 2R_15534090_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG30471
2R	11421833	2R_11421833_SNP [dm3] 2R_15534328_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG30471
2R	11421834	2R_11421834_SNP [dm3] 2R_15534329_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON CG30471
2R	11421987	2R_11421987_SNP [dm3] 2R_15534482_SNP [dm6]	T	G	9.974e^-4	0.706	INTRON CG30471
2R	11542170	2R_11542170_SNP [dm3] 2R_15654665_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON CG42524
2R	11542526	2R_11542526_SNP [dm3] 2R_15655021_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG42524
2R	11542714	2R_11542714_SNP [dm3] 2R_15655209_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON CG42524
2R	11542729	2R_11542729_SNP [dm3] 2R_15655224_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG42524
2R	11542926	2R_11542926_SNP [dm3] 2R_15655421_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG42524
2R	11547825	2R_11547825_SNP [dm3] 2R_15660320_SNP [dm6]	C	T	9.974e^-4	0.706	UTR_3_PRIME fus INTRON fus
2R	11547936	2R_11547936_SNP [dm3] 2R_15660431_SNP [dm6]	G	A	9.974e^-4	0.706	UTR_3_PRIME fus INTRON fus
2R	11569557	2R_11569557_SNP [dm3] 2R_15682052_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG30091 UPSTREAM Ranbp11 DOWNSTREAM CR43429	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_ttk
2R	11569572	2R_11569572_SNP [dm3] 2R_15682067_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG30091 UPSTREAM Ranbp11 DOWNSTREAM CR43429	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_ttk
2R	11604500	2R_11604500_SNP [dm3] 2R_15716995_SNP [dm6]	G	T	9.974e^-4	0.706	INTERGENIC
2R	11604529	2R_11604529_SNP [dm3] 2R_15717024_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC
2R	11604546	2R_11604546_SNP [dm3] 2R_15717041_SNP [dm6]	T	C	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11604555	2R_11604555_SNP [dm3] 2R_15717050_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11618017	2R_11618017_SNP [dm3] 2R_15730512_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG30089
2R	11648310	2R_11648310_SNP [dm3] 2R_15760805_SNP [dm6]	T	G	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	11648339	2R_11648339_SNP [dm3] 2R_15760834_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	11648459	2R_11648459_SNP [dm3] 2R_15760954_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	11679199	2R_11679199_SNP [dm3] 2R_15791694_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	11726052	2R_11726052_SNP [dm3] 2R_15838547_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
2R	11726057	2R_11726057_SNP [dm3] 2R_15838552_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
2R	11726154	2R_11726154_SNP [dm3] 2R_15838649_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
2R	11726491	2R_11726491_SNP [dm3] 2R_15838986_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON tun	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11733592	2R_11733592_SNP [dm3] 2R_15846087_SNP [dm6]	G	C	9.974e^-4	0.706	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_HSA
2R	11745142	2R_11745142_SNP [dm3] 2R_15857637_SNP [dm6]	C	A	9.974e^-4	0.706	DOWNSTREAM Gpo-1 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11746268	2R_11746268_SNP [dm3] 2R_15858763_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING Gpo-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11746306	2R_11746306_SNP [dm3] 2R_15858801_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING Gpo-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11746511	2R_11746511_SNP [dm3] 2R_15859006_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Gpo-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11746514	2R_11746514_SNP [dm3] 2R_15859009_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON Gpo-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11746515	2R_11746515_SNP [dm3] 2R_15859010_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON Gpo-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11752897	2R_11752897_SNP [dm3] 2R_15865392_SNP [dm6]	G	C	9.974e^-4	0.706	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11786324	2R_11786324_SNP [dm3] 2R_15898819_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON sli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11805007	2R_11805007_SNP [dm3] 2R_15917502_SNP [dm6]	G	A	9.974e^-4	0.706	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11805032	2R_11805032_SNP [dm3] 2R_15917527_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11805208	2R_11805208_SNP [dm3] 2R_15917703_SNP [dm6]	G	A	9.974e^-4	0.706	DOWNSTREAM CR44373 INTRON sli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11805425	2R_11805425_SNP [dm3] 2R_15917920_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON sli	TF binding site mE1_TFBS_cad
2R	12083877	2R_12083877_SNP [dm3] 2R_16196372_SNP [dm6]	A	T	9.974e^-4	0.706	UPSTREAM CG44242 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	12467550	2R_12467550_SNP [dm3] 2R_16580045_SNP [dm6]	A	C	9.974e^-4	0.706	UPSTREAM Cdk4 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12501934	2R_12501934_SNP [dm3] 2R_16614429_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON CG5065
2R	12519061	2R_12519061_SNP [dm3] 2R_16631556_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING Alk
2R	12520555	2R_12520555_SNP [dm3] 2R_16633050_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON Alk	TF binding site mE1_TFBS_cad
2R	12805670	2R_12805670_SNP [dm3] 2R_16918165_SNP [dm6]	C	G	9.974e^-4	0.706	INTERGENIC
2R	12805854	2R_12805854_SNP [dm3] 2R_16918349_SNP [dm6]	C	T	9.974e^-4	0.706	INTERGENIC
2R	12950788	2R_12950788_SNP [dm3] 2R_17063283_SNP [dm6]	A	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG6967 UPSTREAM CG8950	TF binding site mE1_TFBS_sens
2R	13014907	2R_13014907_SNP [dm3] 2R_17127402_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CG15605 INTERGENIC
2R	13014912	2R_13014912_SNP [dm3] 2R_17127407_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM CG15605 INTERGENIC
2R	13014937	2R_13014937_SNP [dm3] 2R_17127432_SNP [dm6]	A	T	9.974e^-4	0.706	UPSTREAM CG15605 INTERGENIC
2R	13163314	2R_13163314_SNP [dm3] 2R_17275809_SNP [dm6]	C	A	9.974e^-4	0.706	UTR_5_PRIME mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1339467	2R_1339467_SNP [dm3] 2R_5451962_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON laccase2
2R	1346507	2R_1346507_DEL [dm3] 2R_5459002_DEL [dm6]	CGATACGTGTGCTTTTTCCA...	C	9.974e^-4	0.706	INTERGENIC	transposable element FlyBase
2R	13643948	2R_13643948_SNP [dm3] 2R_17756443_SNP [dm6]	A	C	9.974e^-4	0.706	UPSTREAM HLH54F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2R	1375309	2R_1375309_SNP [dm3] 2R_5487804_SNP [dm6]	G	T	9.974e^-4	0.706	INTRON CG30440
2R	13803233	2R_13803233_DEL [dm3] 2R_17915728_DEL [dm6]	TTT	T	9.974e^-4	0.706	INTRON Elk
2R	14020992	2R_14020992_SNP [dm3] 2R_18133487_SNP [dm6]	G	C	9.974e^-4	0.706	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	14079265	2R_14079265_SNP [dm3] 2R_18191760_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG33958
2R	14093698	2R_14093698_SNP [dm3] 2R_18206193_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2R	14267642	2R_14267642_SNP [dm3] 2R_18380137_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC
2R	14390810	2R_14390810_SNP [dm3] 2R_18503305_SNP [dm6]	C	T	9.974e^-4	0.706	UPSTREAM GstE11 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	14470475	2R_14470475_INS [dm3] 2R_18582970_INS [dm6]	A	AACA	9.974e^-4	0.706	UTR_5_PRIME GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15058471	2R_15058471_SNP [dm3] 2R_19170966_SNP [dm6]	T	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG10737
2R	15172241	2R_15172241_SNP [dm3] 2R_19284736_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2R	15172244	2R_15172244_SNP [dm3] 2R_19284739_SNP [dm6]	G	T	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2R	15172245	2R_15172245_SNP [dm3] 2R_19284740_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG10476 UPSTREAM CG11906 DOWNSTREAM CG10474	TF binding site mE1_TFBS_HSA
2R	15798156	2R_15798156_SNP [dm3] 2R_19910651_SNP [dm6]	C	T	9.974e^-4	0.706	EXON CR44573
2R	15798933	2R_15798933_SNP [dm3] 2R_19911428_SNP [dm6]	T	C	9.974e^-4	0.706	EXON CR44573
2R	15799088	2R_15799088_SNP [dm3] 2R_19911583_SNP [dm6]	T	A	9.974e^-4	0.706	UPSTREAM CR44573 INTERGENIC
2R	16102008	2R_16102008_SNP [dm3] 2R_20214503_SNP [dm6]	A	C	9.974e^-4	0.706	INTERGENIC
2R	16308180	2R_16308180_SNP [dm3] 2R_20420675_SNP [dm6]	T	A	9.974e^-4	0.706	INTERGENIC
2R	16837913	2R_16837913_SNP [dm3] 2R_20950408_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON CG33704	TF binding site BDTNP1_TFBS_da
2R	16858685	2R_16858685_SNP [dm3] 2R_20971180_SNP [dm6]	A	T	9.974e^-4	0.706	INTERGENIC
2R	17021698	2R_17021698_SNP [dm3] 2R_21134193_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17114861	2R_17114861_SNP [dm3] 2R_21227356_SNP [dm6]	T	C	9.974e^-4	0.706	INTRON ASPP
2R	17142781	2R_17142781_SNP [dm3] 2R_21255276_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_5_PRIME Rgk3 UPSTREAM Rgk3	TF binding site mE1_TFBS_sbb
2R	1747604	2R_1747604_SNP [dm3] 2R_5860099_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_3_PRIME dpr12
2R	18021672	2R_18021672_SNP [dm3] 2R_22134167_SNP [dm6]	G	T	9.974e^-4	0.706	INTERGENIC
2R	18192580	2R_18192580_SNP [dm3] 2R_22305075_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON wdp
2R	18304306	2R_18304306_SNP [dm3] 2R_22416801_SNP [dm6]	C	T	9.974e^-4	0.706	SYNONYMOUS_CODING qkr58E-2 UPSTREAM CR45152	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	18476641	2R_18476641_SNP [dm3] 2R_22589136_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON dnr1	TF binding site mE1_TFBS_inv
2R	18702563	2R_18702563_SNP [dm3] 2R_22815058_SNP [dm6]	C	G	9.974e^-4	0.706	NON_SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18901577	2R_18901577_SNP [dm3] 2R_23014054_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_twi
2R	19316208	2R_19316208_SNP [dm3] 2R_23428685_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON CG9815
2R	19386860	2R_19386860_SNP [dm3] 2R_23499337_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM CG13558 INTERGENIC
2R	19565735	2R_19565735_SNP [dm3] 2R_23678212_SNP [dm6]	T	C	9.974e^-4	0.706	SPLICE_SITE_REGION Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19692650	2R_19692650_SNP [dm3] 2R_23805127_SNP [dm6]	G	A	9.974e^-4	0.706	SYNONYMOUS_CODING CG5539 INTRON CG13561
2R	19693046	2R_19693046_SNP [dm3] 2R_23805523_SNP [dm6]	T	C	9.974e^-4	0.706	SYNONYMOUS_CODING CG5539 DOWNSTREAM Ssrp INTRON CG13561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19864151	2R_19864151_SNP [dm3] 2R_23976628_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING Gadd34	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	20106920	2R_20106920_SNP [dm3] 2R_24219397_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON CG30419
2R	20134355	2R_20134355_SNP [dm3] 2R_24246832_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON nord
2R	20139803	2R_20139803_SNP [dm3] 2R_24252280_SNP [dm6]	A	T	9.974e^-4	0.706	UPSTREAM Ir60a DOWNSTREAM snoRNA:Me18S-A1597 INTRON nord
2R	2081530	2R_2081530_SNP [dm3] 2R_6194025_SNP [dm6]	G	A	9.974e^-4	0.706	INTRON Ptr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	2428803	2R_2428803_INS [dm3] 2R_6541298_INS [dm6]	C	CTCTTTCGGCTTAAAGCC...	9.974e^-4	0.706	INTRON jing
2R	2428944	2R_2428944_SNP [dm3] 2R_6541439_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON jing
2R	2797387	2R_2797387_SNP [dm3] 2R_6909882_SNP [dm6]	C	T	9.974e^-4	0.706	INTRON CG30158
2R	3015625	2R_3015625_SNP [dm3] 2R_7128120_SNP [dm6]	C	T	9.974e^-4	0.706	NON_SYNONYMOUS_CODING Cyp9b1 DOWNSTREAM esn
2R	3073045	2R_3073045_SNP [dm3] 2R_7185540_SNP [dm6]	C	T	9.974e^-4	0.706	DOWNSTREAM CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3073538	2R_3073538_SNP [dm3] 2R_7186033_SNP [dm6]	T	C	9.974e^-4	0.706	DOWNSTREAM CG30384 INTRON pk
2R	3093312	2R_3093312_SNP [dm3] 2R_7205807_SNP [dm6]	T	A	9.974e^-4	0.706	INTRON pk
2R	3095292	2R_3095292_SNP [dm3] 2R_7207787_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON pk
2R	3095297	2R_3095297_SNP [dm3] 2R_7207792_SNP [dm6]	A	C	9.974e^-4	0.706	INTRON pk
2R	3096398	2R_3096398_SNP [dm3] 2R_7208893_SNP [dm6]	A	G	9.974e^-4	0.706	INTRON pk	TF binding site mE1_TFBS_chinmo
2R	3097270	2R_3097270_SNP [dm3] 2R_7209765_SNP [dm6]	A	T	9.974e^-4	0.706	INTRON pk
2R	3130437	2R_3130437_SNP [dm3] 2R_7242932_SNP [dm6]	T	C	9.974e^-4	0.706	DOWNSTREAM Ady43A INTERGENIC
2R	3262255	2R_3262255_SNP [dm3] 2R_7374750_SNP [dm6]	C	A	9.974e^-4	0.706	INTRON Dscam1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	3396468	2R_3396468_SNP [dm3] 2R_7508963_SNP [dm6]	G	T	9.974e^-4	0.706	SYNONYMOUS_CODING CG12736 DOWNSTREAM didum	TF binding site mE1_TFBS_sens
2R	3406419	2R_3406419_SNP [dm3] 2R_7518914_SNP [dm6]	G	A	9.974e^-4	0.706	UTR_5_PRIME CG1602 UPSTREAM CG2144	TF binding site mE1_TFBS_cad
2R	3406506	2R_3406506_SNP [dm3] 2R_7519001_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM CG2144 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	3406631	2R_3406631_SNP [dm3] 2R_7519126_SNP [dm6]	T	A	9.974e^-4	0.706	UPSTREAM CG2144 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3406946	2R_3406946_SNP [dm3] 2R_7519441_SNP [dm6]	T	G	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG2144 UPSTREAM CG1602	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3476542	2R_3476542_SNP [dm3] 2R_7589037_SNP [dm6]	C	G	9.974e^-4	0.706	INTRON CG1360	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	3502869	2R_3502869_SNP [dm3] 2R_7615364_SNP [dm6]	G	A	9.974e^-4	0.706	UPSTREAM CG1358 INTRON CG1358
2R	3534881	2R_3534881_SNP [dm3] 2R_7647376_SNP [dm6]	A	G	9.974e^-4	0.706	SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	3534983	2R_3534983_SNP [dm3] 2R_7647478_SNP [dm6]	A	C	9.974e^-4	0.706	SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	3535021	2R_3535021_SNP [dm3] 2R_7647516_SNP [dm6]	G	C	9.974e^-4	0.706	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	4443420	2R_4443420_SNP [dm3] 2R_8555915_SNP [dm6]	G	A	9.974e^-4	0.706	INTERGENIC
2R	4452080	2R_4452080_SNP [dm3] 2R_8564575_SNP [dm6]	G	A	9.974e^-4	0.706	STOP_GAINED Cyp6a14
2R	4452225	2R_4452225_SNP [dm3] 2R_8564720_SNP [dm6]	G	T	9.974e^-4	0.706	STOP_GAINED Cyp6a14
2R	5178493	2R_5178493_SNP [dm3] 2R_9290988_SNP [dm6]	C	A	9.974e^-4	0.706	SYNONYMOUS_CODING Mad1 UPSTREAM Drep-2	TF binding site mE1_TFBS_sens
2R	5191348	2R_5191348_SNP [dm3] 2R_9303843_SNP [dm6]	G	A	9.974e^-4	0.706	UTR_3_PRIME Myd88
2R	5314283	2R_5314283_SNP [dm3] 2R_9426778_SNP [dm6]	A	G	9.974e^-4	0.706	UTR_5_PRIME Pdk DOWNSTREAM prel	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5334047	2R_5334047_SNP [dm3] 2R_9446542_SNP [dm6]	T	C	9.974e^-4	0.706	UPSTREAM CR45321 INTRON Camta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5390807	2R_5390807_SNP [dm3] 2R_9503302_SNP [dm6]	C	G	9.974e^-4	0.706	UPSTREAM brp DOWNSTREAM Wnt2 INTERGENIC

By genomic position
Variant impact
Gene name

HscC phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results