DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.979e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.08186

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1852 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	17524798	2L_17524798_SNP [dm3] 2L_17524798_SNP [dm6]	A	G	1.132e^-6	0.621	SYNONYMOUS_CODING Dhc36C UPSTREAM CG15143 DOWNSTREAM CG15144
3R	15617697	3R_15617697_INS [dm3] 3R_19791975_INS [dm6]	C	CAAAGACACTAGAATATATA...	1.604e^-6	0.621	DOWNSTREAM tRNA:CR31215 INTERGENIC
3L	7196238	3L_7196238_SNP [dm3] 3L_7203138_SNP [dm6]	A	T	1.826e^-6	0.621	INTERGENIC
3L	7196239	3L_7196239_SNP [dm3] 3L_7203139_SNP [dm6]	T	G	1.826e^-6	0.621	INTERGENIC
3R	13915258	3R_13915258_SNP [dm3] 3R_18089536_SNP [dm6]	T	A	3.015e^-6	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7196253	3L_7196253_SNP [dm3] 3L_7203153_SNP [dm6]	C	G	3.414e^-6	0.621	INTERGENIC
2L	4894990	2L_4894990_SNP [dm3] 2L_4894990_SNP [dm6]	C	T	4.321e^-6	0.621	INTRON CG3036
X	3378342	X_3378342_SNP [dm3] X_3484309_SNP [dm6]	A	T	4.517e^-6	0.621	NON_SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999
3R	15617014	3R_15617014_SNP [dm3] 3R_19791292_SNP [dm6]	C	T	4.566e^-6	0.621	DOWNSTREAM tRNA:CR31215 INTERGENIC
3R	21360563	3R_21360563_SNP [dm3] 3R_25534841_SNP [dm6]	T	A	4.835e^-6	0.621	INTRON msi
X	11407530	X_11407530_SNP [dm3] X_11513497_SNP [dm6]	T	G	4.879e^-6	0.621	INTRON Drak
X	10839811	X_10839811_SNP [dm3] X_10945778_SNP [dm6]	A	G	4.944e^-6	0.621	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3L	7196251	3L_7196251_SNP [dm3] 3L_7203151_SNP [dm6]	C	T	5.528e^-6	0.621	INTERGENIC
3R	9698947	3R_9698947_SNP [dm3] 3R_13873225_SNP [dm6]	G	T	5.681e^-6	0.621	INTRON E5	TF binding site mE1_TFBS_cad
3R	21547447	3R_21547447_SNP [dm3] 3R_25721725_SNP [dm6]	T	A	5.725e^-6	0.621	INTRON LpR2
3L	7196204	3L_7196204_SNP [dm3] 3L_7203104_SNP [dm6]	T	C	5.743e^-6	0.621	INTERGENIC
X	10839972	X_10839972_SNP [dm3] X_10945939_SNP [dm6]	G	T	5.762e^-6	0.621	NON_SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3L	7196245	3L_7196245_SNP [dm3] 3L_7203145_SNP [dm6]	G	A	5.960e^-6	0.621	INTERGENIC
2L	9422422	2L_9422422_SNP [dm3] 2L_9422422_SNP [dm6]	C	T	6.329e^-6	0.624	INTRON Mco1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	16042737	3L_16042737_SNP [dm3] 3L_16049637_SNP [dm6]	G	T	6.736e^-6	0.631	INTRON th EXON CR43951	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	17631419	3R_17631419_SNP [dm3] 3R_21805697_SNP [dm6]	A	T	7.693e^-6	0.65	INTRON CASK
3L	953139	3L_953139_SNP [dm3] 3L_953139_SNP [dm6]	A	T	8.050e^-6	0.65	INTRON Glut1
3L	16042724	3L_16042724_SNP [dm3] 3L_16049624_SNP [dm6]	G	A	8.134e^-6	0.65	INTRON th EXON CR43951	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	16785875	2L_16785875_SNP [dm3] 2L_16785875_SNP [dm6]	A	G	8.317e^-6	0.65	INTRON Mhc	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15432969	2R_15432969_SNP [dm3] 2R_19545464_SNP [dm6]	A	T	8.687e^-6	0.651	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17041018	3R_17041018_SNP [dm3] 3R_21215296_SNP [dm6]	G	T	9.663e^-6	0.697	INTRON CG5862	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16786286	2L_16786286_SNP [dm3] 2L_16786286_SNP [dm6]	C	T	1.026e^-5	0.704	SYNONYMOUS_CODING Mhc	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4112215	3L_4112215_SNP [dm3] 3L_4112215_SNP [dm6]	C	T	1.052e^-5	0.704	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13787187	3L_13787187_SNP [dm3] 3L_13794087_SNP [dm6]	G	A	1.119e^-5	0.711	INTRON bru-3
2L	8588872	2L_8588872_SNP [dm3] 2L_8588872_SNP [dm6]	A	G	1.138e^-5	0.711	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
3L	9390772	3L_9390772_SNP [dm3] 3L_9397672_SNP [dm6]	C	T	1.267e^-5	0.766	INTRON CG4080	TF binding site BDTNP1_TFBS_dl
3L	10981177	3L_10981177_SNP [dm3] 3L_10988077_SNP [dm6]	A	G	1.344e^-5	0.771	INTRON klu
3R	9708144	3R_9708144_SNP [dm3] 3R_13882422_SNP [dm6]	G	C	1.357e^-5	0.771	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20022052	X_20022052_SNP [dm3] X_20128019_SNP [dm6]	G	A	1.495e^-5	0.795	INTERGENIC
3R	9698948	3R_9698948_SNP [dm3] 3R_13873226_SNP [dm6]	C	T	1.518e^-5	0.795	INTRON E5	TF binding site mE1_TFBS_cad
3L	16042655	3L_16042655_SNP [dm3] 3L_16049555_SNP [dm6]	T	A	1.527e^-5	0.795	INTRON th & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	13135282	3L_13135282_SNP [dm3] 3L_13142182_SNP [dm6]	G	A	1.612e^-5	0.814	INTERGENIC
3L	1078132	3L_1078132_INS [dm3] 3L_1078132_INS [dm6]	A	AAACAATTGAA...	1.766e^-5	0.814	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16785902	2L_16785902_SNP [dm3] 2L_16785902_SNP [dm6]	C	A	1.838e^-5	0.814	SPLICE_SITE_REGION Mhc INTRON Mhc	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18996560	2L_18996560_SNP [dm3] 2L_18996560_SNP [dm6]	G	A	1.916e^-5	0.814	UPSTREAM CG10650 & 1 other INTERGENIC
3L	2747058	3L_2747058_SNP [dm3] 3L_2747058_SNP [dm6]	A	G	1.951e^-5	0.814	INTRON Mrtf
3L	953093	3L_953093_SNP [dm3] 3L_953093_SNP [dm6]	T	G	2.148e^-5	0.814	INTRON Glut1
3L	953104	3L_953104_SNP [dm3] 3L_953104_SNP [dm6]	C	T	2.148e^-5	0.814	INTRON Glut1
3L	953115	3L_953115_SNP [dm3] 3L_953115_SNP [dm6]	G	T	2.148e^-5	0.814	INTRON Glut1
2R	9628067	2R_9628067_SNP [dm3] 2R_13740562_SNP [dm6]	A	C	2.186e^-5	0.814	INTRON fas
3R	25614225	3R_25614225_SNP [dm3] 3R_29788503_SNP [dm6]	G	C	2.238e^-5	0.814	UPSTREAM kay INTRON kay
3L	14509408	3L_14509408_SNP [dm3] 3L_14516308_SNP [dm6]	A	T	2.291e^-5	0.814	INTRON bbg
3R	22287887	3R_22287887_SNP [dm3] 3R_26462165_SNP [dm6]	C	G	2.293e^-5	0.814	INTRON CG5455
2L	16785886	2L_16785886_SNP [dm3] 2L_16785886_SNP [dm6]	C	T	2.304e^-5	0.814	INTRON Mhc	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13013924	3L_13013924_SNP [dm3] 3L_13020824_SNP [dm6]	G	A	2.341e^-5	0.814	SPLICE_SITE_REGION AdenoK SYNONYMOUS_CODING AdenoK
3R	8854737	3R_8854737_SNP [dm3] 3R_13029015_SNP [dm6]	G	C	2.347e^-5	0.814	UTR_3_PRIME CG12360 INTRON CG12360
3R	9698667	3R_9698667_SNP [dm3] 3R_13872945_SNP [dm6]	T	C	2.361e^-5	0.814	INTRON E5
3R	9698668	3R_9698668_SNP [dm3] 3R_13872946_SNP [dm6]	C	A	2.361e^-5	0.814	INTRON E5
X	10822100	X_10822100_SNP [dm3] X_10928067_SNP [dm6]	G	T	2.379e^-5	0.814	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18463603	3R_18463603_SNP [dm3] 3R_22637881_SNP [dm6]	G	A	2.388e^-5	0.814	SYNONYMOUS_CODING loco	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7197367	3L_7197367_DEL [dm3] 3L_7204267_DEL [dm6]	ACACA	A	2.455e^-5	0.822	INTERGENIC
3R	13727864	3R_13727864_SNP [dm3] 3R_17902142_SNP [dm6]	A	C	2.546e^-5	0.832	INTRON Rim
3L	18480378	3L_18480378_SNP [dm3] 3L_18487278_SNP [dm6]	A	C	2.597e^-5	0.832	INTRON AstC-R2
3R	9698686	3R_9698686_SNP [dm3] 3R_13872964_SNP [dm6]	A	T	2.670e^-5	0.832	INTRON E5
3L	7197582	3L_7197582_SNP [dm3] 3L_7204482_SNP [dm6]	G	A	2.797e^-5	0.832	INTERGENIC
2L	7159522	2L_7159522_SNP [dm3] 2L_7159522_SNP [dm6]	G	T	2.850e^-5	0.832	INTERGENIC
3R	13378834	3R_13378834_SNP [dm3] 3R_17553112_SNP [dm6]	G	C	2.897e^-5	0.832	INTERGENIC
3L	13947517	3L_13947517_SNP [dm3] 3L_13954417_SNP [dm6]	C	T	2.903e^-5	0.832	INTRON CG32137
X	10821803	X_10821803_SNP [dm3] X_10927770_SNP [dm6]	A	G	2.941e^-5	0.832	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15618277	3R_15618277_SNP [dm3] 3R_19792555_SNP [dm6]	A	G	2.979e^-5	0.832	INTERGENIC
X	10835715	X_10835715_SNP [dm3] X_10941682_SNP [dm6]	C	T	3.066e^-5	0.832	INTRON Myo10A	TF binding site mE1_TFBS_chinmo
X	10835719	X_10835719_SNP [dm3] X_10941686_SNP [dm6]	G	C	3.066e^-5	0.832	INTRON Myo10A	TF binding site mE1_TFBS_chinmo
3R	15617394	3R_15617394_SNP [dm3] 3R_19791672_SNP [dm6]	C	T	3.076e^-5	0.832	DOWNSTREAM tRNA:CR31215 INTERGENIC
3L	6801849	3L_6801849_SNP [dm3] 3L_6808749_SNP [dm6]	A	T	3.149e^-5	0.832	INTERGENIC
2L	12146126	2L_12146126_SNP [dm3] 2L_12146126_SNP [dm6]	A	T	3.178e^-5	0.832	INTRON CG31760
2R	19944472	2R_19944472_SNP [dm3] 2R_24056949_SNP [dm6]	C	T	3.189e^-5	0.832	SYNONYMOUS_CODING CG13563 UPSTREAM eIF-5A INTRON ppk29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	11105658	2R_11105658_SNP [dm3] 2R_15218153_SNP [dm6]	T	A	3.219e^-5	0.832	UPSTREAM CG8079 & 1 other DOWNSTREAM Hex-C EXON CR44463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	6950919	2R_6950919_SNP [dm3] 2R_11063414_SNP [dm6]	T	C	3.251e^-5	0.832	INTRON luna	TF binding site BDTNP1_TFBS_twi
X	6024159	X_6024159_SNP [dm3] X_6130126_SNP [dm6]	C	T	3.354e^-5	0.832	INTRON Ca-alpha1T
3R	15617691	3R_15617691_SNP [dm3] 3R_19791969_SNP [dm6]	C	T	3.417e^-5	0.832	DOWNSTREAM tRNA:CR31215 INTERGENIC
3R	25059049	3R_25059049_SNP [dm3] 3R_29233327_SNP [dm6]	T	C	3.440e^-5	0.832	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9949250	X_9949250_SNP [dm3] X_10055217_SNP [dm6]	T	A	3.488e^-5	0.832	SYNONYMOUS_CODING Yp1 UPSTREAM CR45601 DOWNSTREAM CG15312
2L	6014461	2L_6014461_SNP [dm3] 2L_6014461_SNP [dm6]	G	A	3.526e^-5	0.832	INTRON H2.0
3L	12316808	3L_12316808_SNP [dm3] 3L_12323708_SNP [dm6]	C	G	3.543e^-5	0.832	INTERGENIC
3L	14092590	3L_14092590_DEL [dm3] 3L_14099490_DEL [dm6]	AGATACGATTTTACATTCAA...	A	3.551e^-5	0.832	INTERGENIC
3L	7197138	3L_7197138_SNP [dm3] 3L_7204038_SNP [dm6]	T	C	3.648e^-5	0.844	INTERGENIC
2R	14806763	2R_14806763_SNP [dm3] 2R_18919258_SNP [dm6]	A	T	3.781e^-5	0.853	INTRON sano
X	10822097	X_10822097_SNP [dm3] X_10928064_SNP [dm6]	C	A	3.798e^-5	0.853	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7197096	3L_7197096_SNP [dm3] 3L_7203996_SNP [dm6]	A	G	3.859e^-5	0.853	INTERGENIC
2L	1086102	2L_1086102_SNP [dm3] 2L_1086102_SNP [dm6]	A	G	3.889e^-5	0.853	DOWNSTREAM Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19227203	2R_19227203_SNP [dm3] 2R_23339680_SNP [dm6]	G	C	4.023e^-5	0.853	INTERGENIC
X	9684409	X_9684409_INS [dm3] X_9790376_INS [dm6]	C	CG	4.037e^-5	0.853	INTRON CG32698	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10821716	X_10821716_SNP [dm3] X_10927683_SNP [dm6]	A	T	4.091e^-5	0.853	INTRON CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	415069	3L_415069_SNP [dm3] 3L_415069_SNP [dm6]	T	G	4.105e^-5	0.853	INTERGENIC
X	10821731	X_10821731_SNP [dm3] X_10927698_SNP [dm6]	A	G	4.127e^-5	0.853	INTRON CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10818970	X_10818970_SNP [dm3] X_10924937_SNP [dm6]	T	C	4.232e^-5	0.853	SYNONYMOUS_CODING v
3R	16748181	3R_16748181_SNP [dm3] 3R_20922459_SNP [dm6]	C	T	4.234e^-5	0.853	INTRON CG31191 & 1 other
2L	5512607	2L_5512607_SNP [dm3] 2L_5512607_SNP [dm6]	C	T	4.253e^-5	0.853	INTERGENIC
2R	10104260	2R_10104260_SNP [dm3] 2R_14216755_SNP [dm6]	G	A	4.361e^-5	0.853	UPSTREAM mir-308 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	13457777	3R_13457777_SNP [dm3] 3R_17632055_SNP [dm6]	T	C	4.366e^-5	0.853	UPSTREAM tRNA:CR31569 DOWNSTREAM tRNA:CR31573 INTRON CG43175
3L	7520521	3L_7520521_SNP [dm3] 3L_7527421_SNP [dm6]	C	T	4.378e^-5	0.853	UTR_3_PRIME ltl
2L	2596849	2L_2596849_SNP [dm3] 2L_2596849_SNP [dm6]	A	T	4.414e^-5	0.853	INTERGENIC
3R	13457710	3R_13457710_SNP [dm3] 3R_17631988_SNP [dm6]	A	G	4.481e^-5	0.857	UPSTREAM tRNA:CR31569 DOWNSTREAM tRNA:CR31573 INTRON CG43175
3R	18528768	3R_18528768_SNP [dm3] 3R_22703046_SNP [dm6]	C	G	4.543e^-5	0.86	SPLICE_SITE_REGION CG6972 UPSTREAM CCAP INTRON CG6972	TF binding site mE1_TFBS_inv
3L	14509375	3L_14509375_SNP [dm3] 3L_14516275_SNP [dm6]	A	T	4.634e^-5	0.862	INTRON bbg
2L	18347233	2L_18347233_SNP [dm3] 2L_18347233_SNP [dm6]	T	A	4.678e^-5	0.862	INTRON Fas3
3L	13102199	3L_13102199_SNP [dm3] 3L_13109099_SNP [dm6]	G	A	4.706e^-5	0.862	INTERGENIC
3R	17631644	3R_17631644_SNP [dm3] 3R_21805922_SNP [dm6]	A	G	4.738e^-5	0.862	INTRON CASK
3L	3014737	3L_3014737_SNP [dm3] 3L_3014737_SNP [dm6]	T	A	4.833e^-5	0.869	DOWNSTREAM CG32488 INTERGENIC
X	20717446	X_20717446_SNP [dm3] X_20846419_SNP [dm6]	A	T	5.053e^-5	0.869	INTRON shakB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	14365119	2L_14365119_SNP [dm3] 2L_14365119_SNP [dm6]	C	T	5.070e^-5	0.869	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad
2R	1663899	2R_1663899_SNP [dm3] 2R_5776394_SNP [dm6]	G	A	5.141e^-5	0.869	NON_SYNONYMOUS_CODING ZnT41F
X	20569133	X_20569133_SNP [dm3] X_20698106_SNP [dm6]	T	C	5.149e^-5	0.869	DOWNSTREAM run INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13953280	3L_13953280_SNP [dm3] 3L_13960180_SNP [dm6]	G	A	5.297e^-5	0.869	INTRON CG32137
3L	5504997	3L_5504997_SNP [dm3] 3L_5511897_SNP [dm6]	C	G	5.340e^-5	0.869	DOWNSTREAM Lkr INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3L	14852479	3L_14852479_SNP [dm3] 3L_14859379_SNP [dm6]	C	T	5.362e^-5	0.869	INTRON CG17839
3L	7520642	3L_7520642_SNP [dm3] 3L_7527542_SNP [dm6]	A	G	5.364e^-5	0.869	UTR_3_PRIME ltl
3L	3499726	3L_3499726_SNP [dm3] 3L_3499726_SNP [dm6]	T	C	5.381e^-5	0.869	INTRON CG42324
2L	263047	2L_263047_SNP [dm3] 2L_263047_SNP [dm6]	G	T	5.544e^-5	0.869	UTR_3_PRIME CG17075 DOWNSTREAM CG17075 & 1 other INTRON CG3645
X	10820444	X_10820444_SNP [dm3] X_10926411_SNP [dm6]	T	C	5.552e^-5	0.869	UPSTREAM CG2145 DOWNSTREAM v INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9221765	3R_9221765_SNP [dm3] 3R_13396043_SNP [dm6]	A	C	5.577e^-5	0.869	UPSTREAM CCHa2 DOWNSTREAM CG14374 INTERGENIC
3L	3014726	3L_3014726_SNP [dm3] 3L_3014726_SNP [dm6]	G	A	5.596e^-5	0.869	DOWNSTREAM CG32488 INTERGENIC
2L	16785877	2L_16785877_SNP [dm3] 2L_16785877_SNP [dm6]	C	T	5.652e^-5	0.869	INTRON Mhc	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14649660	2R_14649660_SNP [dm3] 2R_18762155_SNP [dm6]	T	C	5.711e^-5	0.869	UTR_5_PRIME Mctp
3L	2124962	3L_2124962_SNP [dm3] 3L_2124962_SNP [dm6]	T	A	5.752e^-5	0.869	INTRON zormin
X	10838353	X_10838353_SNP [dm3] X_10944320_SNP [dm6]	T	C	5.795e^-5	0.869	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3L	7197317	3L_7197317_SNP [dm3] 3L_7204217_SNP [dm6]	G	A	5.841e^-5	0.869	INTERGENIC
2L	21377696	2L_21377696_SNP [dm3] 2L_21377696_SNP [dm6]	C	A	5.851e^-5	0.869	UTR_3_PRIME CG8665
3L	16282815	3L_16282815_SNP [dm3] 3L_16289715_SNP [dm6]	C	T	5.852e^-5	0.869	UTR_3_PRIME CG13045
3R	9697208	3R_9697208_SNP [dm3] 3R_13871486_SNP [dm6]	A	G	5.914e^-5	0.869	INTRON E5
2L	2111844	2L_2111844_SNP [dm3] 2L_2111844_SNP [dm6]	T	A	5.930e^-5	0.869	INTERGENIC
2R	19227105	2R_19227105_SNP [dm3] 2R_23339582_SNP [dm6]	G	T	5.949e^-5	0.869	INTERGENIC
3R	13379016	3R_13379016_SNP [dm3] 3R_17553294_SNP [dm6]	A	G	5.962e^-5	0.869	INTERGENIC
2R	14626901	2R_14626901_SNP [dm3] 2R_18739396_SNP [dm6]	G	T	6.087e^-5	0.869	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
X	8204184	X_8204184_SNP [dm3] X_8310151_SNP [dm6]	A	G	6.184e^-5	0.869	INTRON nAChRalpha3
X	3378454	X_3378454_SNP [dm3] X_3484421_SNP [dm6]	A	C	6.208e^-5	0.869	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	10868930	3L_10868930_DEL [dm3] 3L_10875830_DEL [dm6]	AAT	A	6.216e^-5	0.869	UTR_3_PRIME tna DOWNSTREAM CG6418 & 1 other
3L	10868934	3L_10868934_SNP [dm3] 3L_10875834_SNP [dm6]	T	A	6.216e^-5	0.869	UTR_3_PRIME tna DOWNSTREAM CG6418 & 1 other
3R	9697201	3R_9697201_SNP [dm3] 3R_13871479_SNP [dm6]	A	T	6.290e^-5	0.869	INTRON E5
2R	5389593	2R_5389593_SNP [dm3] 2R_9502088_SNP [dm6]	A	G	6.451e^-5	0.869	SYNONYMOUS_CODING Wnt2	TF binding site mE1_TFBS_cad
3L	7520705	3L_7520705_SNP [dm3] 3L_7527605_SNP [dm6]	A	T	6.463e^-5	0.869	UTR_3_PRIME ltl	TF binding site BDTNP1_TFBS_dl
X	10835740	X_10835740_SNP [dm3] X_10941707_SNP [dm6]	A	T	6.475e^-5	0.869	INTRON Myo10A	TF binding site mE1_TFBS_chinmo
X	10822076	X_10822076_SNP [dm3] X_10928043_SNP [dm6]	G	A	6.498e^-5	0.869	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12000465	2R_12000465_SNP [dm3] 2R_16112960_SNP [dm6]	T	C	6.528e^-5	0.869	SYNONYMOUS_CODING Asph
3L	14207992	3L_14207992_DEL [dm3] 3L_14214892_DEL [dm6]	ATACATTTCAGTTACCTAAA...	A	6.558e^-5	0.869	INTRON nuf	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17005985	3R_17005985_SNP [dm3] 3R_21180263_SNP [dm6]	G	A	6.576e^-5	0.869	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc
2L	7573978	2L_7573978_SNP [dm3] 2L_7573978_SNP [dm6]	T	A	6.593e^-5	0.869	INTRON RapGAP1
2L	11791286	2L_11791286_SNP [dm3] 2L_11791286_SNP [dm6]	T	G	6.634e^-5	0.869	SYNONYMOUS_CODING Tsp33B DOWNSTREAM CG14932
2L	769729	2L_769729_SNP [dm3] 2L_769729_SNP [dm6]	T	A	6.917e^-5	0.884	INTERGENIC
2R	14989274	2R_14989274_SNP [dm3] 2R_19101769_SNP [dm6]	T	C	6.919e^-5	0.884	INTRON 5-HT1A
X	10822151	X_10822151_SNP [dm3] X_10928118_SNP [dm6]	G	A	7.004e^-5	0.884	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7521005	3L_7521005_SNP [dm3] 3L_7527905_SNP [dm6]	A	T	7.005e^-5	0.884	UTR_3_PRIME ltl UPSTREAM lqf	TF binding site BDTNP1_TFBS_dl
3R	17631760	3R_17631760_SNP [dm3] 3R_21806038_SNP [dm6]	G	A	7.181e^-5	0.884	INTRON CASK
3R	5101799	3R_5101799_DEL [dm3] 3R_9276077_DEL [dm6]	TG	A	7.236e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	7196282	3L_7196282_SNP [dm3] 3L_7203182_SNP [dm6]	T	G	7.320e^-5	0.884	INTERGENIC
2L	7331812	2L_7331812_DEL [dm3] 2L_7331812_DEL [dm6]	AA	T	7.440e^-5	0.884	INTERGENIC
3L	9393323	3L_9393323_SNP [dm3] 3L_9400223_SNP [dm6]	A	G	7.462e^-5	0.884	UPSTREAM CG4080 INTRON eIF-4E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8008947	X_8008947_DEL [dm3] X_8114914_DEL [dm6]	ACCAACA	A	7.517e^-5	0.884	INTRON Gclc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	10834717	2L_10834717_SNP [dm3] 2L_10834717_SNP [dm6]	G	C	7.521e^-5	0.884	INTRON Nos
2R	6680796	2R_6680796_SNP [dm3] 2R_10793291_SNP [dm6]	T	A	7.592e^-5	0.884	DOWNSTREAM mthl13 INTRON CG33144
2R	6680784	2R_6680784_SNP [dm3] 2R_10793279_SNP [dm6]	T	A	7.651e^-5	0.884	DOWNSTREAM mthl13 INTRON CG33144
2L	1086087	2L_1086087_SNP [dm3] 2L_1086087_SNP [dm6]	G	A	7.683e^-5	0.884	DOWNSTREAM Atg4a INTRON CG4629	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	6535088	X_6535088_DEL [dm3] X_6641055_DEL [dm6]	ACAA	A	7.694e^-5	0.884	INTRON pigs
X	3195796	X_3195796_DEL [dm3] X_3301763_DEL [dm6]	AGAAA	A	7.696e^-5	0.884	INTRON dnc
X	10835932	X_10835932_SNP [dm3] X_10941899_SNP [dm6]	G	C	7.713e^-5	0.884	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	13642984	2R_13642984_SNP [dm3] 2R_17755479_SNP [dm6]	C	T	7.750e^-5	0.884	SYNONYMOUS_CODING CG6385	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17006107	3R_17006107_SNP [dm3] 3R_21180385_SNP [dm6]	G	A	7.764e^-5	0.884	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	14852491	3L_14852491_SNP [dm3] 3L_14859391_SNP [dm6]	C	A	7.925e^-5	0.884	INTRON CG17839
3L	13277467	3L_13277467_SNP [dm3] 3L_13284367_SNP [dm6]	C	T	7.930e^-5	0.884	DOWNSTREAM CR43146 & 1 other EXON CR43913
X	11407457	X_11407457_SNP [dm3] X_11513424_SNP [dm6]	C	T	8.005e^-5	0.884	INTRON Drak
3R	15617250	3R_15617250_SNP [dm3] 3R_19791528_SNP [dm6]	T	A	8.011e^-5	0.884	DOWNSTREAM tRNA:CR31215 INTERGENIC
3L	14852474	3L_14852474_INS [dm3] 3L_14859374_INS [dm6]	A	ATTAAGCTTAAGACGTTCCT...	8.033e^-5	0.884	INTRON CG17839
2L	14151910	2L_14151910_SNP [dm3] 2L_14151910_SNP [dm6]	T	C	8.043e^-5	0.884	INTRON CG17341
2L	6014025	2L_6014025_INS [dm3] 2L_6014025_INS [dm6]	G	GCTG	8.117e^-5	0.884	CODON_INSERTION H2.0
3L	2549892	3L_2549892_SNP [dm3] 3L_2549892_SNP [dm6]	T	C	8.151e^-5	0.884	INTRON Spn
2L	11791186	2L_11791186_SNP [dm3] 2L_11791186_SNP [dm6]	T	C	8.220e^-5	0.884	SYNONYMOUS_CODING Tsp33B DOWNSTREAM CG14932
3R	13789836	3R_13789836_SNP [dm3] 3R_17964114_SNP [dm6]	T	G	8.247e^-5	0.884	INTRON cpo
3L	13966951	3L_13966951_SNP [dm3] 3L_13973851_SNP [dm6]	G	A	8.386e^-5	0.884	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19771860	3R_19771860_SNP [dm3] 3R_23946138_SNP [dm6]	G	A	8.421e^-5	0.884	INTRON CG12268
3L	16037404	3L_16037404_SNP [dm3] 3L_16044304_SNP [dm6]	T	C	8.532e^-5	0.884	INTRON th	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	9698664	3R_9698664_SNP [dm3] 3R_13872942_SNP [dm6]	C	A	8.609e^-5	0.884	INTRON E5
3R	13457800	3R_13457800_DEL [dm3] 3R_17632078_DEL [dm6]	TT	T	8.665e^-5	0.884	UPSTREAM tRNA:CR31569 DOWNSTREAM tRNA:CR31573 INTRON CG43175
3R	18528770	3R_18528770_INS [dm3] 3R_22703048_INS [dm6]	A	ATCGATGGATAC...	8.779e^-5	0.884	UPSTREAM CCAP INTRON CG6972	TF binding site mE1_TFBS_inv
3R	13457763	3R_13457763_SNP [dm3] 3R_17632041_SNP [dm6]	C	T	8.796e^-5	0.884	UPSTREAM tRNA:CR31569 DOWNSTREAM tRNA:CR31573 INTRON CG43175
3R	3640377	3R_3640377_SNP [dm3] 3R_7814655_SNP [dm6]	G	A	8.827e^-5	0.884	UTR_5_PRIME CG34384	TF binding site BDTNP1_TFBS_dl
3L	2124947	3L_2124947_SNP [dm3] 3L_2124947_SNP [dm6]	A	T	8.840e^-5	0.884	INTRON zormin
2R	18539107	2R_18539107_SNP [dm3] 2R_22651602_SNP [dm6]	G	T	8.868e^-5	0.884	NON_SYNONYMOUS_CODING nsr DOWNSTREAM Cyp6d2	TF binding site mE1_TFBS_inv
2R	12442136	2R_12442136_SNP [dm3] 2R_16554631_SNP [dm6]	T	C	8.887e^-5	0.884	NON_SYNONYMOUS_CODING Syn2 UTR_5_PRIME Syn2
2R	17944098	2R_17944098_SNP [dm3] 2R_22056593_SNP [dm6]	C	G	8.908e^-5	0.884	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
X	12481181	X_12481181_SNP [dm3] X_12587148_SNP [dm6]	T	C	8.912e^-5	0.884	SYNONYMOUS_CODING LIMK1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5794205	3R_5794205_SNP [dm3] 3R_9968483_SNP [dm6]	A	C	8.920e^-5	0.884	INTRON Glut4EF
3L	8145687	3L_8145687_SNP [dm3] 3L_8152587_SNP [dm6]	G	T	8.987e^-5	0.884	UPSTREAM CG13676 INTERGENIC
2L	10833377	2L_10833377_INS [dm3] 2L_10833377_INS [dm6]	C	CC	8.993e^-5	0.884	INTRON Nos
2R	9945226	2R_9945226_SNP [dm3] 2R_14057721_SNP [dm6]	G	T	9.034e^-5	0.884	NON_SYNONYMOUS_CODING mam INTRON mam	TF binding site mE1_TFBS_cad
3R	12031645	3R_12031645_DEL [dm3] 3R_16205923_DEL [dm6]	TA	T	9.045e^-5	0.884	UPSTREAM mtSSB DOWNSTREAM CG31287 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	13953197	3L_13953197_SNP [dm3] 3L_13960097_SNP [dm6]	G	A	9.060e^-5	0.884	INTRON CG32137
2L	8448035	2L_8448035_SNP [dm3] 2L_8448035_SNP [dm6]	T	G	9.086e^-5	0.884	SYNONYMOUS_CODING U26 UTR_3_PRIME U26	TF binding site mE1_TFBS_HSA
2L	6888780	2L_6888780_SNP [dm3] 2L_6888780_SNP [dm6]	A	T	9.101e^-5	0.884	INTRON Nlg2
2R	1785678	2R_1785678_SNP [dm3] 2R_5898173_SNP [dm6]	T	A	9.219e^-5	0.891	INTRON CG43366	TF binding site BDTNP1_TFBS_hb
3L	7254496	3L_7254496_SNP [dm3] 3L_7261396_SNP [dm6]	G	C	9.368e^-5	0.895	INTRON CG14830
2R	11105621	2R_11105621_SNP [dm3] 2R_15218116_SNP [dm6]	G	C	9.394e^-5	0.895	UPSTREAM CG8079 & 1 other DOWNSTREAM Hex-C EXON CR44463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	14942129	2L_14942129_SNP [dm3] 2L_14942129_SNP [dm6]	A	C	9.428e^-5	0.895	INTRON CG42313
2R	17694718	2R_17694718_SNP [dm3] 2R_21807213_SNP [dm6]	G	A	9.486e^-5	0.895	INTERGENIC
3L	10010745	3L_10010745_SNP [dm3] 3L_10017645_SNP [dm6]	C	T	9.497e^-5	0.895	INTRON dpr6
2L	15951796	2L_15951796_SNP [dm3] 2L_15951796_SNP [dm6]	T	C	9.597e^-5	0.899	INTRON beat-Ib
X	8204197	X_8204197_SNP [dm3] X_8310164_SNP [dm6]	C	G	9.652e^-5	0.9	INTRON nAChRalpha3
2L	10483193	2L_10483193_SNP [dm3] 2L_10483193_SNP [dm6]	C	A	9.720e^-5	0.902	UPSTREAM Grip75 DOWNSTREAM RluA-2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk
X	5000357	X_5000357_SNP [dm3] X_5106324_SNP [dm6]	G	C	9.813e^-5	0.902	INTRON rg & 1 other
3L	3880193	3L_3880193_SNP [dm3] 3L_3880193_SNP [dm6]	T	C	9.881e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
2L	769697	2L_769697_SNP [dm3] 2L_769697_SNP [dm6]	C	G	9.894e^-5	0.902	INTERGENIC
X	6535181	X_6535181_SNP [dm3] X_6641148_SNP [dm6]	A	T	9.989e^-5	0.902	INTRON pigs
3L	10121480	3L_10121480_SNP [dm3] 3L_10128380_SNP [dm6]	T	G	1.004e^-4	0.902	INTRON dpr6
2R	11105488	2R_11105488_SNP [dm3] 2R_15217983_SNP [dm6]	T	G	1.012e^-4	0.902	UPSTREAM CG8079 & 1 other DOWNSTREAM CR44463 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
X	7457510	X_7457510_SNP [dm3] X_7563477_SNP [dm6]	G	A	1.020e^-4	0.902	EXON CR44502	TF binding site mE1_TFBS_sens
3R	13458472	3R_13458472_SNP [dm3] 3R_17632750_SNP [dm6]	T	G	1.026e^-4	0.902	DOWNSTREAM tRNA:CR31573 INTRON CG43175
X	9687232	X_9687232_INS [dm3] X_9793199_INS [dm6]	A	AGCTAAA	1.026e^-4	0.902	INTRON CG32698
2L	19228901	2L_19228901_SNP [dm3] 2L_19228901_SNP [dm6]	C	T	1.028e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
X	10835718	X_10835718_SNP [dm3] X_10941685_SNP [dm6]	A	T	1.028e^-4	0.902	INTRON Myo10A	TF binding site mE1_TFBS_chinmo
X	3798425	X_3798425_SNP [dm3] X_3904392_SNP [dm6]	C	T	1.030e^-4	0.902	SYNONYMOUS_CODING CG42541
2L	12121791	2L_12121791_SNP [dm3] 2L_12121791_SNP [dm6]	T	C	1.037e^-4	0.904	INTRON CG17211
2L	8588844	2L_8588844_SNP [dm3] 2L_8588844_SNP [dm6]	G	A	1.049e^-4	0.906	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
3R	11313034	3R_11313034_SNP [dm3] 3R_15487312_SNP [dm6]	A	G	1.050e^-4	0.906	SYNONYMOUS_CODING CG5205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14548928	3R_14548928_SNP [dm3] 3R_18723206_SNP [dm6]	G	A	1.073e^-4	0.906	UPSTREAM CG34283 INTRON Cha	transposable element FlyBase
3R	24298289	3R_24298289_SNP [dm3] 3R_28472567_SNP [dm6]	T	C	1.081e^-4	0.906	INTRON beat-VI
2R	1621748	2R_1621748_SNP [dm3] 2R_5734243_SNP [dm6]	C	G	1.084e^-4	0.906	INTERGENIC	regulatory region REDfly_CRMs
2L	9962445	2L_9962445_SNP [dm3] 2L_9962445_SNP [dm6]	C	T	1.102e^-4	0.906	DOWNSTREAM CR43683 INTRON CG5850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	15617334	3R_15617334_SNP [dm3] 3R_19791612_SNP [dm6]	G	T	1.103e^-4	0.906	DOWNSTREAM tRNA:CR31215 INTERGENIC
2L	17491999	2L_17491999_SNP [dm3] 2L_17491999_SNP [dm6]	G	A	1.105e^-4	0.906	UTR_5_PRIME qua INTRON qua
3L	3447894	3L_3447894_SNP [dm3] 3L_3447894_SNP [dm6]	T	C	1.112e^-4	0.906	INTRON eIF5B
2L	5709217	2L_5709217_SNP [dm3] 2L_5709217_SNP [dm6]	T	A	1.120e^-4	0.906	UPSTREAM CG7236 INTRON CG7236
2L	3191955	2L_3191955_SNP [dm3] 2L_3191955_SNP [dm6]	A	G	1.125e^-4	0.906	INTRON CG34393
2R	19296800	2R_19296800_SNP [dm3] 2R_23409277_SNP [dm6]	T	G	1.126e^-4	0.906	INTERGENIC
3R	19771919	3R_19771919_SNP [dm3] 3R_23946197_SNP [dm6]	A	G	1.127e^-4	0.906	INTRON CG12268
3L	965872	3L_965872_SNP [dm3] 3L_965872_SNP [dm6]	G	C	1.128e^-4	0.906	INTRON Glut1	TF binding site BDTNP1_TFBS_dl
X	15299752	X_15299752_SNP [dm3] X_15405719_SNP [dm6]	C	T	1.138e^-4	0.906	DOWNSTREAM Cngl INTRON Cngl
2R	11105677	2R_11105677_SNP [dm3] 2R_15218172_SNP [dm6]	T	A	1.139e^-4	0.906	UPSTREAM CG8079 & 1 other DOWNSTREAM Hex-C EXON CR44463	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	19270805	2L_19270805_SNP [dm3] 2L_19270805_SNP [dm6]	C	A	1.139e^-4	0.906	INTRON CR44190
3L	7906943	3L_7906943_SNP [dm3] 3L_7913843_SNP [dm6]	G	A	1.142e^-4	0.906	SYNONYMOUS_CODING CG8111 DOWNSTREAM CG8281	TF binding site mE1_TFBS_chinmo
2L	17064868	2L_17064868_SNP [dm3] 2L_17064868_SNP [dm6]	G	C	1.150e^-4	0.906	INTERGENIC
X	10836682	X_10836682_SNP [dm3] X_10942649_SNP [dm6]	A	G	1.152e^-4	0.906	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2L	19012976	2L_19012976_SNP [dm3] 2L_19012976_SNP [dm6]	G	T	1.154e^-4	0.906	DOWNSTREAM CR45292 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7196267	3L_7196267_SNP [dm3] 3L_7203167_SNP [dm6]	A	T	1.155e^-4	0.906	INTERGENIC
3R	25375111	3R_25375111_SNP [dm3] 3R_29549389_SNP [dm6]	A	G	1.158e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	13292441	3L_13292441_SNP [dm3] 3L_13299341_SNP [dm6]	G	T	1.161e^-4	0.906	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	9641739	3R_9641739_SNP [dm3] 3R_13816017_SNP [dm6]	C	T	1.167e^-4	0.906	UPSTREAM CR43642 DOWNSTREAM CR43641 INTERGENIC
3L	4116736	3L_4116736_SNP [dm3] 3L_4116736_SNP [dm6]	T	C	1.167e^-4	0.906	UPSTREAM Chd64 INTRON Chd64
3R	24679872	3R_24679872_SNP [dm3] 3R_28854150_SNP [dm6]	G	T	1.170e^-4	0.906	UTR_3_PRIME Inx3 INTRON spg
X	9686742	X_9686742_SNP [dm3] X_9792709_SNP [dm6]	G	A	1.180e^-4	0.907	INTRON CG32698
2L	11397433	2L_11397433_SNP [dm3] 2L_11397433_SNP [dm6]	G	T	1.181e^-4	0.907	INTERGENIC	regulatory region REDfly_CRMs
X	10839664	X_10839664_SNP [dm3] X_10945631_SNP [dm6]	C	T	1.186e^-4	0.907	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	12445553	2R_12445553_DEL [dm3] 2R_16558048_DEL [dm6]	AA	A	1.200e^-4	0.907	UTR_3_PRIME Syn2 DOWNSTREAM DAT
2L	17304331	2L_17304331_SNP [dm3] 2L_17304331_SNP [dm6]	G	A	1.200e^-4	0.907	INTERGENIC
X	9682832	X_9682832_SNP [dm3] X_9788799_SNP [dm6]	A	G	1.204e^-4	0.907	INTRON CG32698
3L	5426563	3L_5426563_SNP [dm3] 3L_5433463_SNP [dm6]	T	A	1.205e^-4	0.907	INTRON CG34391
X	10832847	X_10832847_SNP [dm3] X_10938814_SNP [dm6]	C	T	1.212e^-4	0.908	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6005882	3L_6005882_INS [dm3] 3L_6012782_INS [dm6]	C	CGGCC	1.222e^-4	0.911	INTRON PVRAP
3L	12229504	3L_12229504_SNP [dm3] 3L_12236404_SNP [dm6]	A	G	1.231e^-4	0.911	INTRON app
3R	12546129	3R_12546129_SNP [dm3] 3R_16720407_SNP [dm6]	C	T	1.234e^-4	0.911	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7196903	3L_7196903_SNP [dm3] 3L_7203803_SNP [dm6]	G	T	1.237e^-4	0.911	INTERGENIC
3L	2124977	3L_2124977_SNP [dm3] 3L_2124977_SNP [dm6]	T	G	1.239e^-4	0.911	INTRON zormin
3L	12605347	3L_12605347_SNP [dm3] 3L_12612247_SNP [dm6]	A	G	1.247e^-4	0.911	INTRON caup
2L	9236341	2L_9236341_SNP [dm3] 2L_9236341_SNP [dm6]	C	T	1.257e^-4	0.911	DOWNSTREAM tRNA:CR31885 INTRON tai
3L	5214681	3L_5214681_INS [dm3] 3L_5221581_INS [dm6]	T	AAAG	1.260e^-4	0.911	INTRON shep
3L	5215047	3L_5215047_SNP [dm3] 3L_5221947_SNP [dm6]	G	C	1.260e^-4	0.911	INTRON shep
2L	16448705	2L_16448705_SNP [dm3] 2L_16448705_SNP [dm6]	G	A	1.283e^-4	0.911	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	2496870	2L_2496870_SNP [dm3] 2L_2496870_SNP [dm6]	C	G	1.285e^-4	0.911	NON_SYNONYMOUS_CODING oaf UTR_3_PRIME oaf	TF binding site mE1_TFBS_chinmo
X	3798436	X_3798436_SNP [dm3] X_3904403_SNP [dm6]	A	G	1.304e^-4	0.911	SYNONYMOUS_CODING CG42541
2L	18134613	2L_18134613_SNP [dm3] 2L_18134613_SNP [dm6]	T	C	1.305e^-4	0.911	SYNONYMOUS_CODING kel	TF binding site mE1_TFBS_cad
2L	17079626	2L_17079626_SNP [dm3] 2L_17079626_SNP [dm6]	C	T	1.309e^-4	0.911	INTERGENIC
2R	13432589	2R_13432589_SNP [dm3] 2R_17545084_SNP [dm6]	T	A	1.315e^-4	0.911	UPSTREAM cyp33 DOWNSTREAM CG43370 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
3L	14336960	3L_14336960_SNP [dm3] 3L_14343860_SNP [dm6]	T	C	1.321e^-4	0.911	INTRON fz
3L	16987883	3L_16987883_SNP [dm3] 3L_16994783_SNP [dm6]	T	G	1.325e^-4	0.911	UTR_3_PRIME CG3764 DOWNSTREAM Exn	TF binding site mE1_TFBS_cad
3R	13870674	3R_13870674_SNP [dm3] 3R_18044952_SNP [dm6]	A	C	1.327e^-4	0.911	DOWNSTREAM htl INTERGENIC
3L	9382851	3L_9382851_SNP [dm3] 3L_9389751_SNP [dm6]	G	A	1.331e^-4	0.911	INTRON CG4080	TF binding site BDTNP1_TFBS_twi
3L	2124958	3L_2124958_SNP [dm3] 3L_2124958_SNP [dm6]	C	A	1.338e^-4	0.911	INTRON zormin
X	6709656	X_6709656_SNP [dm3] X_6815623_SNP [dm6]	T	C	1.346e^-4	0.911	SYNONYMOUS_CODING iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13941168	3R_13941168_SNP [dm3] 3R_18115446_SNP [dm6]	C	T	1.355e^-4	0.911	INTRON sr
X	12097452	X_12097452_SNP [dm3] X_12203419_SNP [dm6]	A	C	1.358e^-4	0.911	UPSTREAM Ten-a INTRON Ten-a	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3450496	3L_3450496_SNP [dm3] 3L_3450496_SNP [dm6]	A	G	1.367e^-4	0.911	INTRON eIF5B
3R	15439690	3R_15439690_SNP [dm3] 3R_19613968_SNP [dm6]	G	A	1.367e^-4	0.911	SYNONYMOUS_CODING CG16727
2R	18542565	2R_18542565_SNP [dm3] 2R_22655060_SNP [dm6]	G	A	1.368e^-4	0.911	SYNONYMOUS_CODING CG30196 UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2601883	2L_2601883_SNP [dm3] 2L_2601883_SNP [dm6]	C	T	1.371e^-4	0.911	UPSTREAM CR44789 INTERGENIC
3L	5216845	3L_5216845_SNP [dm3] 3L_5223745_SNP [dm6]	T	C	1.372e^-4	0.911	INTRON shep
X	9685845	X_9685845_INS [dm3] X_9791812_INS [dm6]	T	TATAACTTTTAATAAGAAGT...	1.373e^-4	0.911	INTRON CG32698
3L	5215139	3L_5215139_SNP [dm3] 3L_5222039_SNP [dm6]	A	T	1.405e^-4	0.911	INTRON shep
X	17907256	X_17907256_SNP [dm3] X_18013223_SNP [dm6]	T	A	1.421e^-4	0.911	INTRON Sh
2L	15901220	2L_15901220_SNP [dm3] 2L_15901220_SNP [dm6]	C	T	1.431e^-4	0.911	NON_SYNONYMOUS_CODING CG31821 UPSTREAM CG31823
2R	11106594	2R_11106594_SNP [dm3] 2R_15219089_SNP [dm6]	A	G	1.433e^-4	0.911	SYNONYMOUS_CODING Hex-C UPSTREAM CR44463 INTRON CG8079	TF binding site mE1_TFBS_sens
3R	15624718	3R_15624718_SNP [dm3] 3R_19798996_SNP [dm6]	A	G	1.436e^-4	0.911	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4368154	3L_4368154_SNP [dm3] 3L_4368154_SNP [dm6]	T	A	1.446e^-4	0.911	UTR_3_PRIME DopEcR UPSTREAM CG11342 DOWNSTREAM DopEcR	TF binding site mE1_TFBS_sens
2R	17849363	2R_17849363_SNP [dm3] 2R_21961858_SNP [dm6]	T	C	1.451e^-4	0.911	INTERGENIC
2L	13475398	2L_13475398_SNP [dm3] 2L_13475398_SNP [dm6]	G	A	1.453e^-4	0.911	SYNONYMOUS_CODING CG42784 INTRON CG42784	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	14437347	3R_14437347_SNP [dm3] 3R_18611625_SNP [dm6]	T	A	1.453e^-4	0.911	INTRON qin & 1 other
2R	14806753	2R_14806753_SNP [dm3] 2R_18919248_SNP [dm6]	A	G	1.454e^-4	0.911	INTRON sano
X	15299747	X_15299747_SNP [dm3] X_15405714_SNP [dm6]	T	C	1.457e^-4	0.911	DOWNSTREAM Cngl INTRON Cngl
3L	18765542	3L_18765542_SNP [dm3] 3L_18772442_SNP [dm6]	T	G	1.461e^-4	0.911	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	10832848	X_10832848_SNP [dm3] X_10938815_SNP [dm6]	C	T	1.478e^-4	0.911	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9698959	3R_9698959_INS [dm3] 3R_13873237_INS [dm6]	TC	CGG	1.495e^-4	0.911	INTRON E5	TF binding site mE1_TFBS_cad
2L	17522097	2L_17522097_SNP [dm3] 2L_17522097_SNP [dm6]	T	G	1.503e^-4	0.911	SYNONYMOUS_CODING CG15143 INTRON Dhc36C
2R	20777769	2R_20777769_SNP [dm3] 2R_24890246_SNP [dm6]	C	T	1.506e^-4	0.911	SYNONYMOUS_CODING Ance-5
2R	20842142	2R_20842142_SNP [dm3] 2R_24954619_SNP [dm6]	A	G	1.506e^-4	0.911	UTR_3_PRIME CG12851 DOWNSTREAM CG12851
2L	8315679	2L_8315679_SNP [dm3] 2L_8315679_SNP [dm6]	C	T	1.511e^-4	0.911	SYNONYMOUS_CODING CG7806	TF binding site mE1_TFBS_sens
3L	5217030	3L_5217030_SNP [dm3] 3L_5223930_SNP [dm6]	T	A	1.522e^-4	0.911	INTRON shep
3L	15717940	3L_15717940_SNP [dm3] 3L_15724840_SNP [dm6]	C	A	1.522e^-4	0.911	INTRON comm
3L	8196164	3L_8196164_SNP [dm3] 3L_8203064_SNP [dm6]	T	C	1.531e^-4	0.911	SYNONYMOUS_CODING CG13679 UPSTREAM CG7366
2L	770090	2L_770090_SNP [dm3] 2L_770090_SNP [dm6]	A	T	1.536e^-4	0.911	INTERGENIC
2L	9312449	2L_9312449_SNP [dm3] 2L_9312449_SNP [dm6]	G	A	1.552e^-4	0.911	INTERGENIC
X	3866392	X_3866392_SNP [dm3] X_3972359_SNP [dm6]	C	T	1.553e^-4	0.911	DOWNSTREAM CR45481 INTERGENIC
3R	19771913	3R_19771913_SNP [dm3] 3R_23946191_SNP [dm6]	C	T	1.554e^-4	0.911	INTRON CG12268
3R	5798611	3R_5798611_SNP [dm3] 3R_9972889_SNP [dm6]	A	C	1.570e^-4	0.911	INTRON Glut4EF
2R	1633080	2R_1633080_SNP [dm3] 2R_5745575_SNP [dm6]	A	C	1.572e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	24875408	3R_24875408_SNP [dm3] 3R_29049686_SNP [dm6]	A	T	1.576e^-4	0.911	DOWNSTREAM Pkc98E INTRON CG11837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15606081	3R_15606081_SNP [dm3] 3R_19780359_SNP [dm6]	G	A	1.576e^-4	0.911	SYNONYMOUS_CODING CG11391 UPSTREAM CG11407
3R	12546128	3R_12546128_SNP [dm3] 3R_16720406_SNP [dm6]	A	T	1.586e^-4	0.911	INTRON Ubx	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22916587	3R_22916587_SNP [dm3] 3R_27090865_SNP [dm6]	G	T	1.588e^-4	0.911	INTRON Cpr97Eb
2L	8143135	2L_8143135_SNP [dm3] 2L_8143135_SNP [dm6]	T	C	1.591e^-4	0.911	DOWNSTREAM CG42762 INTRON CG8552	TF binding site BDTNP1_TFBS_hb
3R	15617275	3R_15617275_SNP [dm3] 3R_19791553_SNP [dm6]	A	C	1.598e^-4	0.911	DOWNSTREAM tRNA:CR31215 INTERGENIC
X	6709650	X_6709650_SNP [dm3] X_6815617_SNP [dm6]	G	A	1.606e^-4	0.911	SYNONYMOUS_CODING iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5418170	2R_5418170_SNP [dm3] 2R_9530665_SNP [dm6]	T	A	1.610e^-4	0.911	INTRON brp
3R	15667619	3R_15667619_SNP [dm3] 3R_19841897_SNP [dm6]	T	G	1.611e^-4	0.911	NON_SYNONYMOUS_CODING CG31459
3L	14244408	3L_14244408_SNP [dm3] 3L_14251308_SNP [dm6]	G	C	1.616e^-4	0.911	INTERGENIC
3L	14201477	3L_14201477_INS [dm3] 3L_14208377_INS [dm6]	A	AA	1.618e^-4	0.911	INTRON nuf
3L	18931722	3L_18931722_SNP [dm3] 3L_18938622_SNP [dm6]	A	G	1.629e^-4	0.911	INTRON CG32204	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14279752	2R_14279752_SNP [dm3] 2R_18392247_SNP [dm6]	T	A	1.635e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	4116740	3L_4116740_SNP [dm3] 3L_4116740_SNP [dm6]	A	T	1.637e^-4	0.911	UPSTREAM Chd64 INTRON Chd64
2R	20799270	2R_20799270_SNP [dm3] 2R_24911747_SNP [dm6]	C	A	1.648e^-4	0.911	INTRON NaCP60E
3R	18699657	3R_18699657_SNP [dm3] 3R_22873935_SNP [dm6]	G	A	1.659e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13943155	2R_13943155_SNP [dm3] 2R_18055650_SNP [dm6]	T	C	1.662e^-4	0.911	DOWNSTREAM CG10912 & 1 other INTERGENIC
2L	17502158	2L_17502158_SNP [dm3] 2L_17502158_SNP [dm6]	G	A	1.667e^-4	0.911	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_chinmo
X	5000417	X_5000417_SNP [dm3] X_5106384_SNP [dm6]	T	C	1.667e^-4	0.911	INTRON rg & 1 other
2R	20279450	2R_20279450_SNP [dm3] 2R_24391927_SNP [dm6]	C	T	1.675e^-4	0.911	DOWNSTREAM slik EXON CR44813
X	12481206	X_12481206_SNP [dm3] X_12587173_SNP [dm6]	G	A	1.678e^-4	0.911	NON_SYNONYMOUS_CODING LIMK1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5512736	2L_5512736_SNP [dm3] 2L_5512736_SNP [dm6]	T	C	1.681e^-4	0.911	INTERGENIC
3R	24237801	3R_24237801_SNP [dm3] 3R_28412079_SNP [dm6]	G	C	1.684e^-4	0.911	INTERGENIC
2L	9470060	2L_9470060_SNP [dm3] 2L_9470060_SNP [dm6]	T	C	1.684e^-4	0.911	UPSTREAM CR43769 INTERGENIC
3R	16741590	3R_16741590_SNP [dm3] 3R_20915868_SNP [dm6]	T	A	1.703e^-4	0.911	INTRON CG31191 & 1 other
3R	21313050	3R_21313050_SNP [dm3] 3R_25487328_SNP [dm6]	C	T	1.732e^-4	0.911	SYNONYMOUS_CODING Dhap-at	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5994669	3L_5994669_SNP [dm3] 3L_6001569_SNP [dm6]	T	C	1.733e^-4	0.911	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13397089	3R_13397089_SNP [dm3] 3R_17571367_SNP [dm6]	G	T	1.736e^-4	0.911	INTERGENIC
X	9687375	X_9687375_SNP [dm3] X_9793342_SNP [dm6]	G	T	1.737e^-4	0.911	INTRON CG32698
3L	10868888	3L_10868888_SNP [dm3] 3L_10875788_SNP [dm6]	C	A	1.743e^-4	0.911	UTR_3_PRIME tna DOWNSTREAM CG6418 & 1 other
2L	18363638	2L_18363638_SNP [dm3] 2L_18363638_SNP [dm6]	G	A	1.755e^-4	0.911	INTRON Fas3
3L	9451064	3L_9451064_SNP [dm3] 3L_9457964_SNP [dm6]	T	A	1.773e^-4	0.911	UTR_5_PRIME CG3552 UPSTREAM CG3437 INTRON CG3552	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9451066	3L_9451066_DEL [dm3] 3L_9457966_DEL [dm6]	TT	T	1.773e^-4	0.911	UTR_5_PRIME CG3552 UPSTREAM CG3437 INTRON CG3552	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5343268	2R_5343268_SNP [dm3] 2R_9455763_SNP [dm6]	C	A	1.774e^-4	0.911	UPSTREAM CG33757 INTRON Camta
X	9687253	X_9687253_SNP [dm3] X_9793220_SNP [dm6]	A	T	1.789e^-4	0.911	INTRON CG32698
X	9687317	X_9687317_SNP [dm3] X_9793284_SNP [dm6]	C	T	1.789e^-4	0.911	INTRON CG32698
3L	18789595	3L_18789595_SNP [dm3] 3L_18796495_SNP [dm6]	C	T	1.798e^-4	0.911	INTRON ftz-f1
3L	11854732	3L_11854732_SNP [dm3] 3L_11861632_SNP [dm6]	A	G	1.821e^-4	0.911	INTRON CG44837
3L	11854854	3L_11854854_SNP [dm3] 3L_11861754_SNP [dm6]	C	T	1.821e^-4	0.911	INTRON CG44837
3L	11854858	3L_11854858_SNP [dm3] 3L_11861758_SNP [dm6]	A	G	1.821e^-4	0.911	INTRON CG44837
3L	23062612	3L_23062612_SNP [dm3] 3L_23069512_SNP [dm6]	G	C	1.843e^-4	0.911	INTERGENIC	transposable element FlyBase
2R	7492403	2R_7492403_SNP [dm3] 2R_11604898_SNP [dm6]	G	C	1.846e^-4	0.911	START_GAINED tou UTR_5_PRIME tou INTRON tou	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10355600	3L_10355600_SNP [dm3] 3L_10362500_SNP [dm6]	C	T	1.853e^-4	0.911	EXON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4633019	3L_4633019_SNP [dm3] 3L_4633019_SNP [dm6]	G	A	1.855e^-4	0.911	INTRON axo
X	12113154	X_12113154_SNP [dm3] X_12219121_SNP [dm6]	G	A	1.857e^-4	0.911	INTRON Ten-a	TF binding site mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	2770051	3L_2770051_SNP [dm3] 3L_2770051_SNP [dm6]	T	C	1.866e^-4	0.911	SYNONYMOUS_CODING CG9977	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14627009	2R_14627009_SNP [dm3] 2R_18739504_SNP [dm6]	A	T	1.871e^-4	0.911	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
3L	2187112	3L_2187112_SNP [dm3] 3L_2187112_SNP [dm6]	T	C	1.873e^-4	0.911	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3804367	X_3804367_SNP [dm3] X_3910334_SNP [dm6]	C	T	1.877e^-4	0.911	INTRON CG42541	TF binding site mE1_TFBS_chinmo
2R	14806771	2R_14806771_SNP [dm3] 2R_18919266_SNP [dm6]	C	G	1.878e^-4	0.911	INTRON sano
2R	18542589	2R_18542589_SNP [dm3] 2R_22655084_SNP [dm6]	A	G	1.895e^-4	0.911	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	4111082	3L_4111082_SNP [dm3] 3L_4111082_SNP [dm6]	C	T	1.899e^-4	0.911	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1698274	3R_1698274_SNP [dm3] 3R_5872552_SNP [dm6]	T	G	1.900e^-4	0.911	INTRON CG34113
2R	7023267	2R_7023267_SNP [dm3] 2R_11135762_SNP [dm6]	C	G	1.909e^-4	0.911	UPSTREAM BBS4 INTERGENIC
X	10832837	X_10832837_SNP [dm3] X_10938804_SNP [dm6]	A	G	1.911e^-4	0.911	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10832842	X_10832842_SNP [dm3] X_10938809_SNP [dm6]	T	A	1.911e^-4	0.911	INTRON Myo10A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9949268	X_9949268_SNP [dm3] X_10055235_SNP [dm6]	A	T	1.911e^-4	0.911	SYNONYMOUS_CODING Yp1 UPSTREAM CR45601 DOWNSTREAM CG15312
3L	8666232	3L_8666232_SNP [dm3] 3L_8673132_SNP [dm6]	T	A	1.914e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	20342309	3R_20342309_SNP [dm3] 3R_24516587_SNP [dm6]	C	G	1.915e^-4	0.911	SPLICE_SITE_REGION CG13617 INTRON CG13617	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15548303	2L_15548303_SNP [dm3] 2L_15548303_SNP [dm6]	T	C	1.917e^-4	0.911	DOWNSTREAM Skadu INTERGENIC
2R	19450864	2R_19450864_SNP [dm3] 2R_23563341_SNP [dm6]	C	T	1.918e^-4	0.911	UPSTREAM CG30184 INTRON Pi3K59F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10835839	X_10835839_SNP [dm3] X_10941806_SNP [dm6]	C	G	1.919e^-4	0.911	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3R	9891823	3R_9891823_SNP [dm3] 3R_14066101_SNP [dm6]	C	T	1.923e^-4	0.911	INTRON foxo
3L	7700426	3L_7700426_SNP [dm3] 3L_7707326_SNP [dm6]	T	C	1.926e^-4	0.911	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
3R	14550325	3R_14550325_SNP [dm3] 3R_18724603_SNP [dm6]	C	T	1.927e^-4	0.911	DOWNSTREAM CG7714 INTRON Cha
3L	13937481	3L_13937481_SNP [dm3] 3L_13944381_SNP [dm6]	T	A	1.936e^-4	0.911	INTRON CG32137
2R	6680821	2R_6680821_SNP [dm3] 2R_10793316_SNP [dm6]	A	C	1.944e^-4	0.911	DOWNSTREAM mthl13 INTRON CG33144
2L	915916	2L_915916_SNP [dm3] 2L_915916_SNP [dm6]	C	T	1.949e^-4	0.911	SYNONYMOUS_CODING GluRIIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5793520	3R_5793520_SNP [dm3] 3R_9967798_SNP [dm6]	A	T	1.949e^-4	0.911	INTRON Glut4EF
2R	3384204	2R_3384204_SNP [dm3] 2R_7496699_SNP [dm6]	A	C	1.951e^-4	0.911	UPSTREAM CG1620 DOWNSTREAM dpa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	22916629	3R_22916629_SNP [dm3] 3R_27090907_SNP [dm6]	A	T	1.964e^-4	0.911	INTRON Cpr97Eb
3R	26056417	3R_26056417_SNP [dm3] 3R_30230695_SNP [dm6]	C	A	1.970e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	12555588	3L_12555588_SNP [dm3] 3L_12562488_SNP [dm6]	C	T	1.976e^-4	0.911	INTRON sowah
3L	13196321	3L_13196321_SNP [dm3] 3L_13203221_SNP [dm6]	T	C	1.981e^-4	0.911	INTERGENIC
X	7727010	X_7727010_DEL [dm3] X_7832977_DEL [dm6]	AGCTATTTA	A	1.983e^-4	0.911	INTRON CG1402
X	15299756	X_15299756_SNP [dm3] X_15405723_SNP [dm6]	A	C	2.014e^-4	0.911	DOWNSTREAM Cngl INTRON Cngl
3R	5805054	3R_5805054_SNP [dm3] 3R_9979332_SNP [dm6]	A	T	2.020e^-4	0.911	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7446912	2R_7446912_SNP [dm3] 2R_11559407_SNP [dm6]	T	C	2.024e^-4	0.911	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9321067	3L_9321067_SNP [dm3] 3L_9327967_SNP [dm6]	A	G	2.031e^-4	0.911	INTERGENIC
3R	17006136	3R_17006136_SNP [dm3] 3R_21180414_SNP [dm6]	T	G	2.032e^-4	0.911	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	5384489	2R_5384489_SNP [dm3] 2R_9496984_SNP [dm6]	C	T	2.032e^-4	0.911	INTRON Wnt2	TF binding site mE1_TFBS_chinmo
X	7457364	X_7457364_SNP [dm3] X_7563331_SNP [dm6]	T	C	2.033e^-4	0.911	EXON CR44502	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7457679	X_7457679_SNP [dm3] X_7563646_SNP [dm6]	G	A	2.033e^-4	0.911	UPSTREAM CR44502 INTERGENIC
2R	10680153	2R_10680153_SNP [dm3] 2R_14792648_SNP [dm6]	G	T	2.036e^-4	0.911	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9698964	3R_9698964_SNP [dm3] 3R_13873242_SNP [dm6]	A	G	2.039e^-4	0.911	INTRON E5	TF binding site mE1_TFBS_cad
3L	4118164	3L_4118164_SNP [dm3] 3L_4118164_SNP [dm6]	C	T	2.044e^-4	0.911	INTRON Chd64
3L	18480129	3L_18480129_SNP [dm3] 3L_18487029_SNP [dm6]	G	A	2.050e^-4	0.911	SYNONYMOUS_CODING AstC-R2
3R	5805909	3R_5805909_SNP [dm3] 3R_9980187_SNP [dm6]	T	G	2.060e^-4	0.911	INTRON Glut4EF
2L	9319081	2L_9319081_SNP [dm3] 2L_9319081_SNP [dm6]	G	C	2.066e^-4	0.911	INTERGENIC
2L	9942896	2L_9942896_SNP [dm3] 2L_9942896_SNP [dm6]	C	T	2.077e^-4	0.911	SYNONYMOUS_CODING CG5853 UTR_3_PRIME CG4619
3L	10262165	3L_10262165_SNP [dm3] 3L_10269065_SNP [dm6]	C	T	2.082e^-4	0.911	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
2L	17304759	2L_17304759_SNP [dm3] 2L_17304759_SNP [dm6]	A	C	2.087e^-4	0.911	INTERGENIC
X	20707599	X_20707599_SNP [dm3] X_20836572_SNP [dm6]	T	C	2.089e^-4	0.911	INTRON shakB
3R	2811312	3R_2811312_SNP [dm3] 3R_6985590_SNP [dm6]	C	T	2.093e^-4	0.911	INTRON Antp
2R	10680154	2R_10680154_SNP [dm3] 2R_14792649_SNP [dm6]	G	T	2.094e^-4	0.911	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7949246	2R_7949246_SNP [dm3] 2R_12061741_SNP [dm6]	C	T	2.103e^-4	0.911	INTRON Drep-3
3R	20308938	3R_20308938_SNP [dm3] 3R_24483216_SNP [dm6]	G	A	2.111e^-4	0.911	INTERGENIC
2L	8634014	2L_8634014_SNP [dm3] 2L_8634014_SNP [dm6]	A	T	2.115e^-4	0.911	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8634015	2L_8634015_SNP [dm3] 2L_8634015_SNP [dm6]	T	C	2.115e^-4	0.911	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2360662	3L_2360662_SNP [dm3] 3L_2360662_SNP [dm6]	C	T	2.115e^-4	0.911	SYNONYMOUS_CODING CG13801
2L	18109779	2L_18109779_SNP [dm3] 2L_18109779_SNP [dm6]	T	C	2.118e^-4	0.911	INTERGENIC
3L	8233634	3L_8233634_DEL [dm3] 3L_8240534_DEL [dm6]	TT	T	2.140e^-4	0.911	UTR_5_PRIME CG7213 UPSTREAM Dscam4 INTRON Dscam4
3L	5216771	3L_5216771_SNP [dm3] 3L_5223671_SNP [dm6]	G	T	2.144e^-4	0.911	INTRON shep
3R	26216019	3R_26216019_SNP [dm3] 3R_30390297_SNP [dm6]	T	C	2.159e^-4	0.911	UTR_3_PRIME Fer2LCH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20783011	2R_20783011_SNP [dm3] 2R_24895488_SNP [dm6]	A	G	2.160e^-4	0.911	INTRON NaCP60E	TF binding site mE1_TFBS_chinmo
3L	13580013	3L_13580013_SNP [dm3] 3L_13586913_SNP [dm6]	A	C	2.170e^-4	0.911	INTRON bru-3
2R	4529251	2R_4529251_SNP [dm3] 2R_8641746_SNP [dm6]	T	G	2.172e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
3R	19322520	3R_19322520_SNP [dm3] 3R_23496798_SNP [dm6]	A	C	2.178e^-4	0.911	INTERGENIC
3R	25059352	3R_25059352_SNP [dm3] 3R_29233630_SNP [dm6]	C	T	2.182e^-4	0.911	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10868949	3L_10868949_SNP [dm3] 3L_10875849_SNP [dm6]	G	T	2.188e^-4	0.911	UTR_3_PRIME tna DOWNSTREAM CG6418 & 1 other
3L	7700451	3L_7700451_SNP [dm3] 3L_7707351_SNP [dm6]	A	G	2.190e^-4	0.911	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
X	4206599	X_4206599_SNP [dm3] X_4312566_SNP [dm6]	T	C	2.193e^-4	0.911	UPSTREAM CG15579 INTRON CR44957
2R	11398697	2R_11398697_SNP [dm3] 2R_15511192_SNP [dm6]	T	C	2.201e^-4	0.911	UPSTREAM GalNAc-T1 INTERGENIC
2L	10316402	2L_10316402_SNP [dm3] 2L_10316402_SNP [dm6]	T	A	2.204e^-4	0.911	INTRON CG4972
X	16922877	X_16922877_SNP [dm3] X_17028844_SNP [dm6]	A	C	2.204e^-4	0.911	INTRON CG45002
3L	10378539	3L_10378539_SNP [dm3] 3L_10385439_SNP [dm6]	T	C	2.206e^-4	0.911	INTERGENIC
2R	16615939	2R_16615939_SNP [dm3] 2R_20728434_SNP [dm6]	A	C	2.208e^-4	0.911	INTRON dpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	20857599	X_20857599_SNP [dm3] X_20986572_SNP [dm6]	C	T	2.214e^-4	0.911	INTERGENIC
2L	12121785	2L_12121785_SNP [dm3] 2L_12121785_SNP [dm6]	C	T	2.231e^-4	0.911	INTRON CG17211
2L	12121787	2L_12121787_INS [dm3] 2L_12121787_INS [dm6]	G	GAATTTGGTCTTAATTAATA...	2.231e^-4	0.911	INTRON CG17211
2L	11773692	2L_11773692_SNP [dm3] 2L_11773692_SNP [dm6]	A	T	2.253e^-4	0.911	INTERGENIC
2L	17304700	2L_17304700_SNP [dm3] 2L_17304700_SNP [dm6]	G	A	2.255e^-4	0.911	INTERGENIC
3R	9222813	3R_9222813_SNP [dm3] 3R_13397091_SNP [dm6]	G	A	2.260e^-4	0.911	SYNONYMOUS_CODING CG14374 UPSTREAM CG14377
X	6709515	X_6709515_SNP [dm3] X_6815482_SNP [dm6]	C	T	2.263e^-4	0.911	SPLICE_SITE_REGION iav INTRON iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6733698	3L_6733698_SNP [dm3] 3L_6740598_SNP [dm6]	G	C	2.264e^-4	0.911	UTR_3_PRIME dikar INTRON dikar
3L	7524582	3L_7524582_SNP [dm3] 3L_7531482_SNP [dm6]	T	G	2.266e^-4	0.911	UPSTREAM lqf INTRON lqf
2L	519087	2L_519087_SNP [dm3] 2L_519087_SNP [dm6]	G	C	2.289e^-4	0.911	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12442130	2R_12442130_SNP [dm3] 2R_16554625_SNP [dm6]	C	T	2.294e^-4	0.911	NON_SYNONYMOUS_CODING Syn2 SPLICE_SITE_REGION Syn2 UTR_5_PRIME Syn2 INTRON Syn2
X	3723310	X_3723310_SNP [dm3] X_3829277_SNP [dm6]	T	C	2.297e^-4	0.911	INTRON ec & 1 other
2R	5353489	2R_5353489_SNP [dm3] 2R_9465984_SNP [dm6]	G	A	2.300e^-4	0.911	INTRON Camta
2L	16448699	2L_16448699_SNP [dm3] 2L_16448699_SNP [dm6]	T	C	2.302e^-4	0.911	UPSTREAM Idgf2 & 1 other INTRON Idgf2
3R	26753407	3R_26753407_DEL [dm3] 3R_30927685_DEL [dm6]	TT	T	2.307e^-4	0.911	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	5904997	3L_5904997_SNP [dm3] 3L_5911897_SNP [dm6]	G	A	2.322e^-4	0.911	INTRON CG13288
X	3378534	X_3378534_SNP [dm3] X_3484501_SNP [dm6]	A	G	2.323e^-4	0.911	UTR_3_PRIME CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4143645	2L_4143645_SNP [dm3] 2L_4143645_SNP [dm6]	T	A	2.330e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19642155	2R_19642155_SNP [dm3] 2R_23754632_SNP [dm6]	G	A	2.333e^-4	0.911	INTRON CG9850
X	20019633	X_20019633_SNP [dm3] X_20125600_SNP [dm6]	C	A	2.334e^-4	0.911	DOWNSTREAM CG34331 INTERGENIC
2R	8804148	2R_8804148_SNP [dm3] 2R_12916643_SNP [dm6]	T	C	2.338e^-4	0.911	INTRON NAT1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13170834	3L_13170834_SNP [dm3] 3L_13177734_SNP [dm6]	A	G	2.352e^-4	0.911	DOWNSTREAM snky INTERGENIC
X	10832185	X_10832185_SNP [dm3] X_10938152_SNP [dm6]	G	A	2.354e^-4	0.911	INTRON Myo10A
3L	4115215	3L_4115215_SNP [dm3] 3L_4115215_SNP [dm6]	G	A	2.358e^-4	0.911	INTRON Chd64
X	3378333	X_3378333_SNP [dm3] X_3484300_SNP [dm6]	A	G	2.370e^-4	0.911	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999
3R	19339906	3R_19339906_SNP [dm3] 3R_23514184_SNP [dm6]	A	T	2.375e^-4	0.911	INTRON Irk2
2L	10894867	2L_10894867_SNP [dm3] 2L_10894867_SNP [dm6]	C	T	2.384e^-4	0.911	EXON CR44491	TF binding site mE1_TFBS_inv
X	9949229	X_9949229_SNP [dm3] X_10055196_SNP [dm6]	T	C	2.400e^-4	0.911	SYNONYMOUS_CODING Yp1 UPSTREAM CR45601 DOWNSTREAM CG15312
3R	9891841	3R_9891841_SNP [dm3] 3R_14066119_SNP [dm6]	G	A	2.411e^-4	0.911	INTRON foxo
2R	20045993	2R_20045993_SNP [dm3] 2R_24158470_SNP [dm6]	A	G	2.418e^-4	0.911	SYNONYMOUS_CODING DnaJ-60 UTR_5_PRIME CG42568 UPSTREAM spag DOWNSTREAM Dat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	9699206	3R_9699206_SNP [dm3] 3R_13873484_SNP [dm6]	T	C	2.430e^-4	0.911	SYNONYMOUS_CODING E5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6504156	2L_6504156_SNP [dm3] 2L_6504156_SNP [dm6]	C	G	2.432e^-4	0.911	INTRON CG31637
2L	11791304	2L_11791304_SNP [dm3] 2L_11791304_SNP [dm6]	T	C	2.436e^-4	0.911	SYNONYMOUS_CODING Tsp33B DOWNSTREAM CG14932	TF binding site mE1_TFBS_cad
X	8149138	X_8149138_SNP [dm3] X_8255105_SNP [dm6]	C	T	2.442e^-4	0.911	INTRON CG1632
3L	13305600	3L_13305600_SNP [dm3] 3L_13312500_SNP [dm6]	A	T	2.444e^-4	0.911	INTERGENIC
2R	6082618	2R_6082618_SNP [dm3] 2R_10195113_SNP [dm6]	T	C	2.446e^-4	0.911	INTERGENIC
3R	13871678	3R_13871678_SNP [dm3] 3R_18045956_SNP [dm6]	T	C	2.449e^-4	0.911	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
3L	18312772	3L_18312772_SNP [dm3] 3L_18319672_SNP [dm6]	G	A	2.450e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9470103	2L_9470103_SNP [dm3] 2L_9470103_SNP [dm6]	T	G	2.455e^-4	0.911	UPSTREAM CR43769 INTERGENIC
2R	20782522	2R_20782522_SNP [dm3] 2R_24894999_SNP [dm6]	T	G	2.460e^-4	0.911	INTRON NaCP60E
X	5635204	X_5635204_SNP [dm3] X_5741171_SNP [dm6]	A	G	2.466e^-4	0.911	NON_SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8448406	2L_8448406_SNP [dm3] 2L_8448406_SNP [dm6]	T	A	2.473e^-4	0.911	INTRON U26
2L	9660642	2L_9660642_SNP [dm3] 2L_9660642_SNP [dm6]	C	T	2.474e^-4	0.911	INTERGENIC
3R	12549475	3R_12549475_SNP [dm3] 3R_16723753_SNP [dm6]	A	T	2.476e^-4	0.911	INTRON Ubx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22856609	3R_22856609_SNP [dm3] 3R_27030887_SNP [dm6]	A	T	2.477e^-4	0.911	INTRON RYa-R
2R	12614586	2R_12614586_INS [dm3] 2R_16727081_INS [dm6]	T	TGTATT	2.481e^-4	0.911	INTRON CG30463	TF binding site mE1_TFBS_inv
3R	15612469	3R_15612469_SNP [dm3] 3R_19786747_SNP [dm6]	A	G	2.484e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14527954	X_14527954_SNP [dm3] X_14633921_SNP [dm6]	G	A	2.489e^-4	0.911	INTRON NetA	TF binding site mE1_TFBS_HSA
3R	24726823	3R_24726823_SNP [dm3] 3R_28901101_SNP [dm6]	A	T	2.489e^-4	0.911	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9304177	2L_9304177_DEL [dm3] 2L_9304177_DEL [dm6]	GA	G	2.501e^-4	0.911	DOWNSTREAM CR42844 INTERGENIC
X	9765058	X_9765058_DEL [dm3] X_9871025_DEL [dm6]	AACA	A	2.512e^-4	0.911	DOWNSTREAM CG45061 INTERGENIC
3R	18224243	3R_18224243_SNP [dm3] 3R_22398521_SNP [dm6]	T	C	2.514e^-4	0.911	DOWNSTREAM tRNA:CR31166 INTERGENIC	TF binding site mE1_TFBS_cad
2L	12340755	2L_12340755_SNP [dm3] 2L_12340755_SNP [dm6]	C	T	2.516e^-4	0.911	INTERGENIC
X	6973869	X_6973869_SNP [dm3] X_7079836_SNP [dm6]	G	A	2.520e^-4	0.911	INTRON Sxl
3L	6178304	3L_6178304_SNP [dm3] 3L_6185204_SNP [dm6]	T	A	2.520e^-4	0.911	UTR_5_PRIME CG43293 UPSTREAM CG43293 & 1 other DOWNSTREAM D19A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run
3L	18808485	3L_18808485_SNP [dm3] 3L_18815385_SNP [dm6]	T	C	2.528e^-4	0.911	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	18373990	3R_18373990_SNP [dm3] 3R_22548268_SNP [dm6]	A	C	2.533e^-4	0.911	UPSTREAM AdipoR INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18134610	2L_18134610_SNP [dm3] 2L_18134610_SNP [dm6]	A	G	2.535e^-4	0.911	SYNONYMOUS_CODING kel	TF binding site mE1_TFBS_cad
3R	765752	3R_765752_SNP [dm3] 3R_4940030_SNP [dm6]	A	T	2.545e^-4	0.911	UTR_3_PRIME Cdep INTRON Cdep
2L	16786970	2L_16786970_SNP [dm3] 2L_16786970_SNP [dm6]	C	T	2.552e^-4	0.911	INTRON Mhc	TF binding site BDTNP1_TFBS_dl
3L	13753190	3L_13753190_SNP [dm3] 3L_13760090_SNP [dm6]	A	T	2.553e^-4	0.911	INTRON bru-3
X	15792240	X_15792240_SNP [dm3] X_15898207_SNP [dm6]	A	T	2.554e^-4	0.911	INTRON shi
2R	19892750	2R_19892750_SNP [dm3] 2R_24005227_SNP [dm6]	T	G	2.568e^-4	0.911	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15795976	2R_15795976_SNP [dm3] 2R_19908471_SNP [dm6]	T	G	2.581e^-4	0.911	INTERGENIC
3R	12520978	3R_12520978_SNP [dm3] 3R_16695256_SNP [dm6]	T	G	2.582e^-4	0.911	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	12520994	3R_12520994_SNP [dm3] 3R_16695272_SNP [dm6]	C	T	2.582e^-4	0.911	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	12520999	3R_12520999_SNP [dm3] 3R_16695277_SNP [dm6]	A	C	2.582e^-4	0.911	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	12521095	3R_12521095_SNP [dm3] 3R_16695373_SNP [dm6]	C	T	2.582e^-4	0.911	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	9646823	3R_9646823_DEL [dm3] 3R_13821101_DEL [dm6]	ATGGA	A	2.594e^-4	0.911	INTERGENIC
2L	7072222	2L_7072222_SNP [dm3] 2L_7072222_SNP [dm6]	T	C	2.595e^-4	0.911	INTRON Pvf2
3R	15624697	3R_15624697_SNP [dm3] 3R_19798975_SNP [dm6]	A	T	2.595e^-4	0.911	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6928850	2R_6928850_SNP [dm3] 2R_11041345_SNP [dm6]	C	A	2.604e^-4	0.911	INTRON luna
X	8114875	X_8114875_INS [dm3] X_8220842_INS [dm6]	A	ATTTA	2.605e^-4	0.911	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8634006	2L_8634006_SNP [dm3] 2L_8634006_SNP [dm6]	A	T	2.620e^-4	0.911	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5793018	3R_5793018_SNP [dm3] 3R_9967296_SNP [dm6]	T	A	2.635e^-4	0.911	INTRON Glut4EF
2L	2596843	2L_2596843_DEL [dm3] 2L_2596843_DEL [dm6]	TT	C	2.644e^-4	0.911	INTERGENIC
3L	5795393	3L_5795393_SNP [dm3] 3L_5802293_SNP [dm6]	A	G	2.645e^-4	0.911	UPSTREAM CG42272 INTRON S6k	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	8145692	3L_8145692_SNP [dm3] 3L_8152592_SNP [dm6]	G	A	2.651e^-4	0.911	UPSTREAM CG13676 INTERGENIC
2R	13007819	2R_13007819_SNP [dm3] 2R_17120314_SNP [dm6]	C	A	2.653e^-4	0.911	UPSTREAM CR45272 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1445788	3L_1445788_INS [dm3] 3L_1445788_INS [dm6]	T	TT	2.654e^-4	0.911	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18353739	2L_18353739_SNP [dm3] 2L_18353739_SNP [dm6]	T	A	2.664e^-4	0.911	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6721050	2L_6721050_SNP [dm3] 2L_6721050_SNP [dm6]	G	T	2.666e^-4	0.911	NON_SYNONYMOUS_CODING homer
3L	311799	3L_311799_SNP [dm3] 3L_311799_SNP [dm6]	T	A	2.679e^-4	0.911	UPSTREAM fwd INTRON fwd	TF binding site BDTNP1_TFBS_z
2L	8588877	2L_8588877_SNP [dm3] 2L_8588877_SNP [dm6]	T	G	2.693e^-4	0.911	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
2L	9297773	2L_9297773_SNP [dm3] 2L_9297773_SNP [dm6]	T	A	2.695e^-4	0.911	UTR_3_PRIME Ggamma30A
2L	14835964	2L_14835964_SNP [dm3] 2L_14835964_SNP [dm6]	C	A	2.696e^-4	0.911	INTERGENIC
3R	20671065	3R_20671065_SNP [dm3] 3R_24845343_SNP [dm6]	T	G	2.712e^-4	0.911	INTRON Esp	TF binding site BDTNP1_TFBS_da
X	14527860	X_14527860_SNP [dm3] X_14633827_SNP [dm6]	C	A	2.716e^-4	0.911	INTRON NetA
2R	16622908	2R_16622908_SNP [dm3] 2R_20735403_SNP [dm6]	G	T	2.716e^-4	0.911	INTRON dpr
3R	1596499	3R_1596499_SNP [dm3] 3R_5770777_SNP [dm6]	A	C	2.717e^-4	0.911	INTRON CG2082
2L	10519398	2L_10519398_SNP [dm3] 2L_10519398_SNP [dm6]	A	T	2.718e^-4	0.911	DOWNSTREAM Lrr47 INTERGENIC
3L	2838180	3L_2838180_SNP [dm3] 3L_2838180_SNP [dm6]	C	A	2.732e^-4	0.911	INTRON CG43444
2R	20746210	2R_20746210_SNP [dm3] 2R_24858687_SNP [dm6]	A	G	2.738e^-4	0.911	UPSTREAM CR44829 INTERGENIC
3L	10935756	3L_10935756_SNP [dm3] 3L_10942656_SNP [dm6]	G	C	2.739e^-4	0.911	INTERGENIC
X	10823807	X_10823807_SNP [dm3] X_10929774_SNP [dm6]	A	T	2.745e^-4	0.911	DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	12316770	3L_12316770_SNP [dm3] 3L_12323670_SNP [dm6]	C	G	2.746e^-4	0.911	INTERGENIC
2R	19509812	2R_19509812_SNP [dm3] 2R_23622289_SNP [dm6]	A	C	2.749e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4077031	3L_4077031_SNP [dm3] 3L_4077031_SNP [dm6]	A	G	2.750e^-4	0.911	INTRON Gad1
3L	6298014	3L_6298014_SNP [dm3] 3L_6304914_SNP [dm6]	C	T	2.756e^-4	0.911	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
2L	268120	2L_268120_SNP [dm3] 2L_268120_SNP [dm6]	T	C	2.759e^-4	0.911	UPSTREAM CG17075 & 1 other INTRON CG3645
3L	9463186	3L_9463186_DEL [dm3] 3L_9470086_DEL [dm6]	CCAT	C	2.760e^-4	0.911	INTRON CG44838	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25067569	3R_25067569_SNP [dm3] 3R_29241847_SNP [dm6]	T	C	2.763e^-4	0.911	SYNONYMOUS_CODING CG31445
3R	12520993	3R_12520993_SNP [dm3] 3R_16695271_SNP [dm6]	T	A	2.780e^-4	0.911	INTRON Ubx	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	22295056	X_22295056_DEL [dm3] X_22893220_DEL [dm6]	GAG	G	2.793e^-4	0.911	INTERGENIC
3R	12549575	3R_12549575_SNP [dm3] 3R_16723853_SNP [dm6]	C	T	2.794e^-4	0.911	INTRON Ubx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6733657	3L_6733657_SNP [dm3] 3L_6740557_SNP [dm6]	G	A	2.797e^-4	0.911	UTR_3_PRIME dikar INTRON dikar
3R	26154547	3R_26154547_DEL [dm3] 3R_30328825_DEL [dm6]	AGAA	A	2.801e^-4	0.911	INTRON hdc
3R	20465844	3R_20465844_SNP [dm3] 3R_24640122_SNP [dm6]	C	T	2.806e^-4	0.911	SYNONYMOUS_CODING puf DOWNSTREAM puf	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3R	8813775	3R_8813775_SNP [dm3] 3R_12988053_SNP [dm6]	A	T	2.807e^-4	0.911	NON_SYNONYMOUS_CODING CG14383 INTRON CG31342	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24165765	3R_24165765_SNP [dm3] 3R_28340043_SNP [dm6]	A	G	2.813e^-4	0.911	UPSTREAM Moca-cyp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2997323	X_2997323_SNP [dm3] X_3103290_SNP [dm6]	T	C	2.820e^-4	0.911	INTRON kirre
2L	7163309	2L_7163309_SNP [dm3] 2L_7163309_SNP [dm6]	C	T	2.824e^-4	0.911	INTERGENIC
2L	16112348	2L_16112348_SNP [dm3] 2L_16112348_SNP [dm6]	G	A	2.826e^-4	0.911	INTERGENIC
X	10835938	X_10835938_SNP [dm3] X_10941905_SNP [dm6]	G	T	2.845e^-4	0.911	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
X	5635209	X_5635209_SNP [dm3] X_5741176_SNP [dm6]	C	T	2.852e^-4	0.911	SYNONYMOUS_CODING IntS6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12549587	3R_12549587_SNP [dm3] 3R_16723865_SNP [dm6]	T	C	2.854e^-4	0.911	INTRON Ubx	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6288684	2R_6288684_SNP [dm3] 2R_10401179_SNP [dm6]	T	A	2.856e^-4	0.911	INTRON CG42732
2L	9660599	2L_9660599_SNP [dm3] 2L_9660599_SNP [dm6]	T	C	2.857e^-4	0.911	INTERGENIC
2R	6871123	2R_6871123_SNP [dm3] 2R_10983618_SNP [dm6]	T	G	2.857e^-4	0.911	INTRON luna
2R	12314084	2R_12314084_SNP [dm3] 2R_16426579_SNP [dm6]	C	T	2.867e^-4	0.911	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	3863295	X_3863295_SNP [dm3] X_3969262_SNP [dm6]	A	G	2.874e^-4	0.911	SYNONYMOUS_CODING CG6414 UPSTREAM CG6428 EXON CR45481	TF binding site BDTNP1_TFBS_dl
3L	12555420	3L_12555420_INS [dm3] 3L_12562320_INS [dm6]	A	ACTATTAATAATTGCT...	2.884e^-4	0.911	INTRON sowah
X	2750706	X_2750706_DEL [dm3] X_2856673_DEL [dm6]	AA	A	2.886e^-4	0.911	INTRON kirre
2R	5353488	2R_5353488_SNP [dm3] 2R_9465983_SNP [dm6]	A	G	2.889e^-4	0.911	INTRON Camta
2L	17364632	2L_17364632_SNP [dm3] 2L_17364632_SNP [dm6]	T	G	2.899e^-4	0.911	DOWNSTREAM CG31804 INTERGENIC
3L	5233848	3L_5233848_DEL [dm3] 3L_5240748_DEL [dm6]	CC	C	2.903e^-4	0.911	INTRON shep
3L	7520272	3L_7520272_SNP [dm3] 3L_7527172_SNP [dm6]	A	G	2.909e^-4	0.911	UTR_3_PRIME ltl
2R	6239109	2R_6239109_SNP [dm3] 2R_10351604_SNP [dm6]	A	G	2.912e^-4	0.911	UTR_3_PRIME CG43172 & 1 other DOWNSTREAM CG43171 & 2 others INTRON CG42732
3L	11854789	3L_11854789_SNP [dm3] 3L_11861689_SNP [dm6]	G	T	2.919e^-4	0.911	INTRON CG44837
2L	7071791	2L_7071791_SNP [dm3] 2L_7071791_SNP [dm6]	A	G	2.926e^-4	0.911	INTRON Pvf2
3R	26984684	3R_26984684_SNP [dm3] 3R_31158962_SNP [dm6]	C	G	2.929e^-4	0.911	INTRON Gycbeta100B & 1 other	TF binding site mE1_TFBS_chinmo
X	3785615	X_3785615_DEL [dm3] X_3891582_DEL [dm6]	AA	A	2.929e^-4	0.911	UTR_3_PRIME CG42541 DOWNSTREAM CG42541
3L	6163834	3L_6163834_SNP [dm3] 3L_6170734_SNP [dm6]	A	G	2.930e^-4	0.911	SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12000278	2R_12000278_SNP [dm3] 2R_16112773_SNP [dm6]	A	T	2.931e^-4	0.911	INTRON Asph
3R	7294565	3R_7294565_SNP [dm3] 3R_11468843_SNP [dm6]	T	A	2.933e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6733564	3L_6733564_SNP [dm3] 3L_6740464_SNP [dm6]	G	C	2.934e^-4	0.911	UTR_3_PRIME dikar INTRON dikar
X	10836199	X_10836199_SNP [dm3] X_10942166_SNP [dm6]	C	T	2.935e^-4	0.911	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
X	20707576	X_20707576_SNP [dm3] X_20836549_SNP [dm6]	T	G	2.942e^-4	0.911	INTRON shakB
3L	5358973	3L_5358973_SNP [dm3] 3L_5365873_SNP [dm6]	C	T	2.954e^-4	0.911	UPSTREAM Membrin & 1 other INTRON Uev1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	18134496	2L_18134496_SNP [dm3] 2L_18134496_SNP [dm6]	C	T	2.959e^-4	0.911	SYNONYMOUS_CODING kel	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	17324057	2L_17324057_SNP [dm3] 2L_17324057_SNP [dm6]	G	T	2.965e^-4	0.911	INTERGENIC
3L	6180567	3L_6180567_SNP [dm3] 3L_6187467_SNP [dm6]	T	C	2.973e^-4	0.911	SYNONYMOUS_CODING D19A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6133080	3R_6133080_SNP [dm3] 3R_10307358_SNP [dm6]	T	C	2.977e^-4	0.911	SYNONYMOUS_CODING CG43143 DOWNSTREAM CG6293	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6013532	2L_6013532_SNP [dm3] 2L_6013532_SNP [dm6]	T	G	2.983e^-4	0.911	INTRON H2.0	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9426067	2L_9426067_SNP [dm3] 2L_9426067_SNP [dm6]	G	A	2.985e^-4	0.911	NON_SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
3L	2996246	3L_2996246_SNP [dm3] 3L_2996246_SNP [dm6]	A	C	2.991e^-4	0.911	DOWNSTREAM CG2113 INTERGENIC
2L	1450831	2L_1450831_SNP [dm3] 2L_1450831_SNP [dm6]	T	C	2.992e^-4	0.911	INTERGENIC
2L	10020732	2L_10020732_SNP [dm3] 2L_10020732_SNP [dm6]	A	G	2.994e^-4	0.911	INTERGENIC
3L	2468868	3L_2468868_SNP [dm3] 3L_2468868_SNP [dm6]	T	C	2.997e^-4	0.911	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_zfh1
X	1361894	X_1361894_SNP [dm3] X_1467861_SNP [dm6]	T	A	3.009e^-4	0.911	SYNONYMOUS_CODING CG14777 DOWNSTREAM CG32808 INTRON CG14778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20717301	X_20717301_SNP [dm3] X_20846274_SNP [dm6]	A	G	3.028e^-4	0.911	INTRON shakB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	19230570	2L_19230570_SNP [dm3] 2L_19230570_SNP [dm6]	C	A	3.032e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	17384352	2L_17384352_SNP [dm3] 2L_17384352_SNP [dm6]	T	A	3.033e^-4	0.911	UPSTREAM CLIP-190 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	17384357	2L_17384357_SNP [dm3] 2L_17384357_SNP [dm6]	A	C	3.033e^-4	0.911	UPSTREAM CLIP-190 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	17384370	2L_17384370_SNP [dm3] 2L_17384370_SNP [dm6]	C	T	3.033e^-4	0.911	UPSTREAM CLIP-190 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	20703636	X_20703636_SNP [dm3] X_20832609_SNP [dm6]	C	G	3.050e^-4	0.911	INTRON shakB
3R	9699259	3R_9699259_INS [dm3] 3R_13873537_INS [dm6]	G	GTTG	3.056e^-4	0.911	CODON_INSERTION E5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	765290	3R_765290_SNP [dm3] 3R_4939568_SNP [dm6]	T	A	3.057e^-4	0.911	UTR_3_PRIME Cdep INTRON Cdep	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	18786048	3L_18786048_SNP [dm3] 3L_18792948_SNP [dm6]	A	G	3.057e^-4	0.911	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9176486	2R_9176486_SNP [dm3] 2R_13288981_SNP [dm6]	T	G	3.060e^-4	0.911	INTRON Dh31-R
X	7458118	X_7458118_SNP [dm3] X_7564085_SNP [dm6]	G	C	3.064e^-4	0.911	UPSTREAM CR44502 INTERGENIC
X	9686335	X_9686335_SNP [dm3] X_9792302_SNP [dm6]	C	G	3.067e^-4	0.911	INTRON CG32698
2L	3178662	2L_3178662_SNP [dm3] 2L_3178662_SNP [dm6]	C	A	3.072e^-4	0.911	INTRON CG34393
3L	14214488	3L_14214488_DEL [dm3] 3L_14221388_DEL [dm6]	TCT	T	3.073e^-4	0.911	UPSTREAM nuf INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23527564	3R_23527564_SNP [dm3] 3R_27701842_SNP [dm6]	T	A	3.076e^-4	0.911	NON_SYNONYMOUS_CODING btz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7567123	2L_7567123_SNP [dm3] 2L_7567123_SNP [dm6]	T	C	3.082e^-4	0.911	INTRON RapGAP1
3L	2124833	3L_2124833_SNP [dm3] 3L_2124833_SNP [dm6]	C	T	3.098e^-4	0.911	INTRON zormin
2L	16945648	2L_16945648_SNP [dm3] 2L_16945648_SNP [dm6]	G	A	3.107e^-4	0.911	UPSTREAM CR43053 INTERGENIC
2L	14909303	2L_14909303_SNP [dm3] 2L_14909303_SNP [dm6]	T	G	3.109e^-4	0.911	INTRON CG42313
2L	17502054	2L_17502054_SNP [dm3] 2L_17502054_SNP [dm6]	G	A	3.109e^-4	0.911	SPLICE_SITE_REGION Dhc36C UPSTREAM CG6412 INTRON Dhc36C	TF binding site mE1_TFBS_chinmo
3R	5790764	3R_5790764_SNP [dm3] 3R_9965042_SNP [dm6]	C	T	3.113e^-4	0.911	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14923090	2L_14923090_SNP [dm3] 2L_14923090_SNP [dm6]	G	A	3.120e^-4	0.911	INTRON CG42313
2R	2863783	2R_2863783_SNP [dm3] 2R_6976278_SNP [dm6]	A	T	3.129e^-4	0.911	UTR_3_PRIME vimar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10242460	3R_10242460_INS [dm3] 3R_14416738_INS [dm6]	A	TTGG	3.145e^-4	0.911		TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7087233	3L_7087233_SNP [dm3] 3L_7094133_SNP [dm6]	A	T	3.155e^-4	0.911	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12443061	2R_12443061_DEL [dm3] 2R_16555556_DEL [dm6]	AATCTTACGTA...	A	3.171e^-4	0.911	INTRON Syn2
2R	13661379	2R_13661379_SNP [dm3] 2R_17773874_SNP [dm6]	G	T	3.175e^-4	0.911	DOWNSTREAM fab1 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	1558871	3R_1558871_SNP [dm3] 3R_5733149_SNP [dm6]	C	T	3.177e^-4	0.911	UPSTREAM CG1239 INTERGENIC
3L	3443379	3L_3443379_SNP [dm3] 3L_3443379_SNP [dm6]	T	A	3.180e^-4	0.911	INTRON eIF5B
3L	5213944	3L_5213944_SNP [dm3] 3L_5220844_SNP [dm6]	G	C	3.188e^-4	0.911	INTRON shep
3L	5213974	3L_5213974_SNP [dm3] 3L_5220874_SNP [dm6]	C	A	3.188e^-4	0.911	INTRON shep
3R	25259398	3R_25259398_SNP [dm3] 3R_29433676_SNP [dm6]	T	G	3.190e^-4	0.911	INTRON Ptp99A
3L	1443549	3L_1443549_SNP [dm3] 3L_1443549_SNP [dm6]	T	C	3.194e^-4	0.911	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	9685580	2L_9685580_SNP [dm3] 2L_9685580_SNP [dm6]	A	G	3.195e^-4	0.911	INTRON Pka-C1
3L	13305596	3L_13305596_INS [dm3] 3L_13312496_INS [dm6]	T	TA	3.197e^-4	0.911	INTERGENIC
3R	21356003	3R_21356003_SNP [dm3] 3R_25530281_SNP [dm6]	T	G	3.202e^-4	0.911	INTRON msi
2R	20744373	2R_20744373_SNP [dm3] 2R_24856850_SNP [dm6]	C	T	3.203e^-4	0.911	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	17671195	2R_17671195_SNP [dm3] 2R_21783690_SNP [dm6]	T	A	3.209e^-4	0.911	INTERGENIC
2R	17671196	2R_17671196_SNP [dm3] 2R_21783691_SNP [dm6]	T	A	3.209e^-4	0.911	INTERGENIC
3L	13136242	3L_13136242_SNP [dm3] 3L_13143142_SNP [dm6]	C	A	3.213e^-4	0.911	INTERGENIC
3R	20002375	3R_20002375_SNP [dm3] 3R_24176653_SNP [dm6]	C	G	3.217e^-4	0.911	INTRON CG13606
2L	9660702	2L_9660702_SNP [dm3] 2L_9660702_SNP [dm6]	C	T	3.218e^-4	0.911	INTERGENIC
3L	9135970	3L_9135970_SNP [dm3] 3L_9142870_SNP [dm6]	A	C	3.226e^-4	0.911	UTR_3_PRIME nwk DOWNSTREAM nwk INTRON nwk
3L	14092511	3L_14092511_SNP [dm3] 3L_14099411_SNP [dm6]	T	A	3.226e^-4	0.911	INTERGENIC
2R	11221086	2R_11221086_SNP [dm3] 2R_15333581_SNP [dm6]	C	T	3.228e^-4	0.911	SYNONYMOUS_CODING Hr51	TF binding site mE1_TFBS_chinmo
2L	19013705	2L_19013705_SNP [dm3] 2L_19013705_SNP [dm6]	C	G	3.237e^-4	0.911	INTERGENIC
X	4425768	X_4425768_SNP [dm3] X_4531735_SNP [dm6]	C	T	3.243e^-4	0.911	SYNONYMOUS_CODING CG3556 INTRON CR32773
2L	9419984	2L_9419984_SNP [dm3] 2L_9419984_SNP [dm6]	A	T	3.258e^-4	0.911	INTRON Mco1
2L	626555	2L_626555_SNP [dm3] 2L_626555_SNP [dm6]	A	G	3.273e^-4	0.911	NON_SYNONYMOUS_CODING CG2839 DOWNSTREAM lectin-21Ca	TF binding site BDTNP1_TFBS_dl
X	16922878	X_16922878_SNP [dm3] X_17028845_SNP [dm6]	A	G	3.281e^-4	0.911	INTRON CG45002
3R	24816933	3R_24816933_SNP [dm3] 3R_28991211_SNP [dm6]	G	A	3.284e^-4	0.911	INTERGENIC
3R	24816943	3R_24816943_SNP [dm3] 3R_28991221_SNP [dm6]	A	G	3.284e^-4	0.911	INTERGENIC
2L	17384356	2L_17384356_SNP [dm3] 2L_17384356_SNP [dm6]	G	A	3.285e^-4	0.911	UPSTREAM CLIP-190 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	20707550	X_20707550_SNP [dm3] X_20836523_SNP [dm6]	T	C	3.288e^-4	0.911	INTRON shakB
3R	10319760	3R_10319760_SNP [dm3] 3R_14494038_SNP [dm6]	C	T	3.300e^-4	0.911	INTERGENIC
2R	20197918	2R_20197918_SNP [dm3] 2R_24310395_SNP [dm6]	G	A	3.312e^-4	0.911	INTRON betaTub60D
3L	13947345	3L_13947345_SNP [dm3] 3L_13954245_SNP [dm6]	C	T	3.312e^-4	0.911	INTRON CG32137
3R	26173908	3R_26173908_SNP [dm3] 3R_30348186_SNP [dm6]	T	A	3.316e^-4	0.911	INTRON hdc
2L	3367382	2L_3367382_SNP [dm3] 2L_3367382_SNP [dm6]	T	A	3.318e^-4	0.911	NON_SYNONYMOUS_CODING CG34394	TF binding site mE1_TFBS_chinmo
3R	26681601	3R_26681601_SNP [dm3] 3R_30855879_SNP [dm6]	G	T	3.319e^-4	0.911	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	3499728	3L_3499728_SNP [dm3] 3L_3499728_SNP [dm6]	T	A	3.330e^-4	0.911	INTRON CG42324
2R	15052860	2R_15052860_SNP [dm3] 2R_19165355_SNP [dm6]	G	T	3.336e^-4	0.911	UTR_5_PRIME CG10737 INTRON CG10737
2R	18542610	2R_18542610_DEL [dm3] 2R_22655105_DEL [dm6]	GTATTGGGGCTC...	G	3.338e^-4	0.911	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18542624	2R_18542624_SNP [dm3] 2R_22655119_SNP [dm6]	A	T	3.338e^-4	0.911	UPSTREAM Cyp6d2 & 1 other DOWNSTREAM CG43325 & 1 other INTRON CG30196	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	23045733	3L_23045733_SNP [dm3] 3L_23052633_SNP [dm6]	A	G	3.342e^-4	0.911	INTERGENIC	transposable element FlyBase
3L	6004804	3L_6004804_SNP [dm3] 3L_6011704_SNP [dm6]	G	A	3.343e^-4	0.911	UPSTREAM alphaKap4 INTRON PVRAP
3L	1062994	3L_1062994_SNP [dm3] 3L_1062994_SNP [dm6]	A	G	3.343e^-4	0.911	INTRON bab1
2L	6395500	2L_6395500_SNP [dm3] 2L_6395500_SNP [dm6]	A	G	3.359e^-4	0.911	DOWNSTREAM CG42369 INTRON CG42368
2R	3623580	2R_3623580_SNP [dm3] 2R_7736075_SNP [dm6]	C	T	3.360e^-4	0.911	UPSTREAM CG18812 DOWNSTREAM CG30497 & 1 other INTERGENIC
2L	14960044	2L_14960044_SNP [dm3] 2L_14960044_SNP [dm6]	G	T	3.366e^-4	0.911	INTRON CG42313
3R	13856297	3R_13856297_SNP [dm3] 3R_18030575_SNP [dm6]	A	T	3.370e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	6163549	3L_6163549_SNP [dm3] 3L_6170449_SNP [dm6]	C	A	3.371e^-4	0.911	NON_SYNONYMOUS_CODING CG10289	TF binding site mE1_TFBS_cad
3R	24774615	3R_24774615_SNP [dm3] 3R_28948893_SNP [dm6]	G	T	3.379e^-4	0.911	INTRON CG14521
X	10835908	X_10835908_SNP [dm3] X_10941875_SNP [dm6]	C	T	3.385e^-4	0.911	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
2R	14626950	2R_14626950_SNP [dm3] 2R_18739445_SNP [dm6]	T	C	3.396e^-4	0.911	DOWNSTREAM CG33998 INTRON Hs3st-A EXON CR30121
2L	519093	2L_519093_SNP [dm3] 2L_519093_SNP [dm6]	T	A	3.398e^-4	0.911	INTRON ush	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7070328	2L_7070328_SNP [dm3] 2L_7070328_SNP [dm6]	T	G	3.420e^-4	0.911	DOWNSTREAM CG11289 INTRON Pvf2	TF binding site mE1_TFBS_cad
2L	17513300	2L_17513300_SNP [dm3] 2L_17513300_SNP [dm6]	C	T	3.428e^-4	0.911	SYNONYMOUS_CODING Dhc36C	TF binding site BDTNP1_TFBS_twi
3R	13383086	3R_13383086_SNP [dm3] 3R_17557364_SNP [dm6]	G	A	3.433e^-4	0.911	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12399733	2L_12399733_SNP [dm3] 2L_12399733_SNP [dm6]	A	C	3.433e^-4	0.911	INTRON Pkd2
3R	15785430	3R_15785430_SNP [dm3] 3R_19959708_SNP [dm6]	T	A	3.443e^-4	0.911	INTRON Hs6st
2L	917180	2L_917180_SNP [dm3] 2L_917180_SNP [dm6]	G	A	3.447e^-4	0.911	SYNONYMOUS_CODING GluRIIC
2L	7074433	2L_7074433_SNP [dm3] 2L_7074433_SNP [dm6]	T	A	3.447e^-4	0.911	INTRON Pvf2
3L	3017226	3L_3017226_SNP [dm3] 3L_3017226_SNP [dm6]	A	G	3.447e^-4	0.911	START_GAINED CG32487 UTR_5_PRIME CG32487
3R	5815951	3R_5815951_SNP [dm3] 3R_9990229_SNP [dm6]	T	C	3.452e^-4	0.911	UTR_3_PRIME Glut4EF
3R	20508317	3R_20508317_SNP [dm3] 3R_24682595_SNP [dm6]	T	A	3.453e^-4	0.911	INTRON slo
3L	16050094	3L_16050094_SNP [dm3] 3L_16056994_SNP [dm6]	G	T	3.458e^-4	0.911	INTRON Mbs
2R	20780658	2R_20780658_SNP [dm3] 2R_24893135_SNP [dm6]	A	G	3.460e^-4	0.911	INTRON NaCP60E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	1741466	3R_1741466_SNP [dm3] 3R_5915744_SNP [dm6]	A	G	3.467e^-4	0.911	INTRON CG34113
3R	20002372	3R_20002372_SNP [dm3] 3R_24176650_SNP [dm6]	A	G	3.472e^-4	0.911	INTRON CG13606
X	12407396	X_12407396_SNP [dm3] X_12513363_SNP [dm6]	G	A	3.484e^-4	0.911	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12117589	2L_12117589_SNP [dm3] 2L_12117589_SNP [dm6]	T	C	3.486e^-4	0.911	INTRON CG17211
2L	9660629	2L_9660629_SNP [dm3] 2L_9660629_SNP [dm6]	C	A	3.487e^-4	0.911	INTERGENIC
2R	12441758	2R_12441758_SNP [dm3] 2R_16554253_SNP [dm6]	T	C	3.519e^-4	0.911	UPSTREAM Syn2 INTRON Syn2	TF binding site BDTNP1_TFBS_twi
X	10835742	X_10835742_SNP [dm3] X_10941709_SNP [dm6]	T	C	3.534e^-4	0.911	INTRON Myo10A	TF binding site mE1_TFBS_chinmo
X	10824095	X_10824095_SNP [dm3] X_10930062_SNP [dm6]	T	A	3.536e^-4	0.911	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	9236003	2L_9236003_SNP [dm3] 2L_9236003_SNP [dm6]	A	T	3.537e^-4	0.911	DOWNSTREAM tRNA:CR31885 INTRON tai
3L	293666	3L_293666_SNP [dm3] 3L_293666_SNP [dm6]	T	C	3.538e^-4	0.911	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	2601897	2R_2601897_SNP [dm3] 2R_6714392_SNP [dm6]	C	T	3.539e^-4	0.911	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10848624	X_10848624_SNP [dm3] X_10954591_SNP [dm6]	A	T	3.543e^-4	0.911	UTR_5_PRIME Myo10A INTRON Myo10A
X	17356161	X_17356161_SNP [dm3] X_17462128_SNP [dm6]	G	A	3.546e^-4	0.911	SPLICE_SITE_REGION CG43658 INTRON CG43658
3L	14995453	3L_14995453_SNP [dm3] 3L_15002353_SNP [dm6]	T	C	3.552e^-4	0.911	SYNONYMOUS_CODING Reck	TF binding site mE1_TFBS_cad
3L	14092509	3L_14092509_SNP [dm3] 3L_14099409_SNP [dm6]	G	A	3.554e^-4	0.911	INTERGENIC
3L	17387863	3L_17387863_SNP [dm3] 3L_17394763_SNP [dm6]	G	C	3.556e^-4	0.911	INTERGENIC
2R	12934071	2R_12934071_SNP [dm3] 2R_17046566_SNP [dm6]	G	A	3.558e^-4	0.911	UTR_3_PRIME CG9640 UPSTREAM CG9642
2R	12443079	2R_12443079_SNP [dm3] 2R_16555574_SNP [dm6]	G	C	3.562e^-4	0.911	INTRON Syn2
3L	2178774	3L_2178774_SNP [dm3] 3L_2178774_SNP [dm6]	G	C	3.563e^-4	0.911	INTERGENIC
2L	14909512	2L_14909512_SNP [dm3] 2L_14909512_SNP [dm6]	T	C	3.569e^-4	0.911	INTRON CG42313
3L	14509420	3L_14509420_SNP [dm3] 3L_14516320_SNP [dm6]	C	G	3.570e^-4	0.911	INTRON bbg
3L	317562	3L_317562_SNP [dm3] 3L_317562_SNP [dm6]	G	A	3.570e^-4	0.911	NON_SYNONYMOUS_CODING CG34264 INTRON fwd
2R	15269383	2R_15269383_SNP [dm3] 2R_19381878_SNP [dm6]	C	T	3.572e^-4	0.911	SYNONYMOUS_CODING CG10073
3L	1078406	3L_1078406_DEL [dm3] 3L_1078406_DEL [dm6]	AT	A	3.591e^-4	0.911	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7492394	2R_7492394_SNP [dm3] 2R_11604889_SNP [dm6]	T	C	3.601e^-4	0.911	UTR_5_PRIME tou INTRON tou	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	14433027	2R_14433027_SNP [dm3] 2R_18545522_SNP [dm6]	C	G	3.603e^-4	0.911	SYNONYMOUS_CODING Rgk2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	14960491	3R_14960491_SNP [dm3] 3R_19134769_SNP [dm6]	T	A	3.607e^-4	0.911	UPSTREAM Cyp12a4 DOWNSTREAM Cyp12a5 INTERGENIC
3R	15613289	3R_15613289_SNP [dm3] 3R_19787567_SNP [dm6]	A	T	3.608e^-4	0.911	INTERGENIC
2L	6013534	2L_6013534_SNP [dm3] 2L_6013534_SNP [dm6]	T	A	3.613e^-4	0.911	INTRON H2.0	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16448697	2L_16448697_SNP [dm3] 2L_16448697_SNP [dm6]	T	A	3.618e^-4	0.911	UPSTREAM Idgf2 & 1 other INTRON Idgf2
2L	8588892	2L_8588892_SNP [dm3] 2L_8588892_SNP [dm6]	T	C	3.627e^-4	0.911	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl
3L	7700470	3L_7700470_INS [dm3] 3L_7707370_INS [dm6]	G	GG	3.628e^-4	0.911	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
2R	14783475	2R_14783475_SNP [dm3] 2R_18895970_SNP [dm6]	C	T	3.632e^-4	0.911	INTRON sano
3R	9661215	3R_9661215_SNP [dm3] 3R_13835493_SNP [dm6]	T	C	3.661e^-4	0.911	SYNONYMOUS_CODING Nsf2
2L	17251978	2L_17251978_SNP [dm3] 2L_17251978_SNP [dm6]	C	A	3.665e^-4	0.911	INTRON beat-IIIc
2R	11398750	2R_11398750_SNP [dm3] 2R_15511245_SNP [dm6]	A	T	3.679e^-4	0.911	UPSTREAM GalNAc-T1 INTERGENIC
3R	9699263	3R_9699263_SNP [dm3] 3R_13873541_SNP [dm6]	T	C	3.700e^-4	0.911	SYNONYMOUS_CODING E5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14446480	3L_14446480_SNP [dm3] 3L_14453380_SNP [dm6]	T	A	3.700e^-4	0.911	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	9567410	3L_9567410_SNP [dm3] 3L_9574310_SNP [dm6]	A	G	3.700e^-4	0.911	INTRON CG42673
2L	7074435	2L_7074435_SNP [dm3] 2L_7074435_SNP [dm6]	A	C	3.709e^-4	0.911	INTRON Pvf2
3L	6155000	3L_6155000_SNP [dm3] 3L_6161900_SNP [dm6]	C	T	3.711e^-4	0.911	DOWNSTREAM Cpr65Az & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4825592	3R_4825592_SNP [dm3] 3R_8999870_SNP [dm6]	T	G	3.716e^-4	0.911	INTRON CG31100
2L	4158641	2L_4158641_SNP [dm3] 2L_4158641_SNP [dm6]	A	G	3.724e^-4	0.911	INTERGENIC
X	7264365	X_7264365_SNP [dm3] X_7370332_SNP [dm6]	T	A	3.733e^-4	0.911	INTRON CG1677 & 1 other
2L	12013944	2L_12013944_SNP [dm3] 2L_12013944_SNP [dm6]	A	G	3.739e^-4	0.911	DOWNSTREAM CG6734 & 1 other INTERGENIC
2R	6441045	2R_6441045_SNP [dm3] 2R_10553540_SNP [dm6]	T	C	3.764e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	17463454	2R_17463454_SNP [dm3] 2R_21575949_SNP [dm6]	C	G	3.776e^-4	0.911	INTRON CG10440	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4619160	2R_4619160_SNP [dm3] 2R_8731655_SNP [dm6]	C	T	3.778e^-4	0.911	INTRON stmA	TF binding site mE1_TFBS_sens
2L	13862677	2L_13862677_SNP [dm3] 2L_13862677_SNP [dm6]	A	G	3.780e^-4	0.911	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	2803567	3R_2803567_SNP [dm3] 3R_6977845_SNP [dm6]	T	G	3.784e^-4	0.911	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	12155878	X_12155878_DEL [dm3] X_12261845_DEL [dm6]	TCC	T	3.792e^-4	0.911	INTRON Ten-a
3L	5497287	3L_5497287_SNP [dm3] 3L_5504187_SNP [dm6]	G	C	3.797e^-4	0.911	INTRON CG34342
3R	13727510	3R_13727510_SNP [dm3] 3R_17901788_SNP [dm6]	T	G	3.798e^-4	0.911	INTRON Rim
X	10823619	X_10823619_SNP [dm3] X_10929586_SNP [dm6]	G	A	3.800e^-4	0.911	SYNONYMOUS_CODING CG2145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	16425184	3L_16425184_SNP [dm3] 3L_16432084_SNP [dm6]	T	A	3.827e^-4	0.911	INTRON CG33158 & 1 other
2L	18031342	2L_18031342_SNP [dm3] 2L_18031342_SNP [dm6]	T	C	3.828e^-4	0.911	INTRON rdo
3L	5214046	3L_5214046_SNP [dm3] 3L_5220946_SNP [dm6]	A	G	3.828e^-4	0.911	INTRON shep
3L	11118384	3L_11118384_SNP [dm3] 3L_11125284_SNP [dm6]	T	C	3.830e^-4	0.911	INTRON CG42575	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	9312434	2L_9312434_SNP [dm3] 2L_9312434_SNP [dm6]	A	G	3.831e^-4	0.911	INTERGENIC
2R	19227109	2R_19227109_SNP [dm3] 2R_23339586_SNP [dm6]	T	C	3.841e^-4	0.911	INTERGENIC
3R	24816941	3R_24816941_SNP [dm3] 3R_28991219_SNP [dm6]	T	G	3.850e^-4	0.911	INTERGENIC
3R	6999307	3R_6999307_SNP [dm3] 3R_11173585_SNP [dm6]	A	G	3.850e^-4	0.911	NON_SYNONYMOUS_CODING Ugt86Dj UPSTREAM Ugt35a
3R	26866422	3R_26866422_SNP [dm3] 3R_31040700_SNP [dm6]	A	T	3.850e^-4	0.911	INTRON CanA1
3L	11776718	3L_11776718_SNP [dm3] 3L_11783618_SNP [dm6]	T	C	3.862e^-4	0.911	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15929487	3R_15929487_SNP [dm3] 3R_20103765_SNP [dm6]	C	T	3.864e^-4	0.911	INTERGENIC
3R	24040851	3R_24040851_SNP [dm3] 3R_28215129_SNP [dm6]	A	T	3.878e^-4	0.911	INTRON CG34354	TF binding site BDTNP1_TFBS_da
2L	1855533	2L_1855533_SNP [dm3] 2L_1855533_SNP [dm6]	A	C	3.886e^-4	0.911	INTRON wry
3L	10262207	3L_10262207_SNP [dm3] 3L_10269107_SNP [dm6]	G	A	3.887e^-4	0.911	UPSTREAM CR45242 INTERGENIC	regulatory region REDfly_CRMs
2R	19227155	2R_19227155_SNP [dm3] 2R_23339632_SNP [dm6]	C	T	3.888e^-4	0.911	INTERGENIC
2L	15931198	2L_15931198_SNP [dm3] 2L_15931198_SNP [dm6]	G	T	3.900e^-4	0.911	INTRON beat-Ib
2R	4468414	2R_4468414_SNP [dm3] 2R_8580909_SNP [dm6]	G	T	3.901e^-4	0.911	NON_SYNONYMOUS_CODING CG42326 SPLICE_SITE_REGION CG42326
2R	13800516	2R_13800516_SNP [dm3] 2R_17913011_SNP [dm6]	G	T	3.904e^-4	0.911	INTRON Elk
3L	16703654	3L_16703654_SNP [dm3] 3L_16710554_SNP [dm6]	A	G	3.910e^-4	0.911	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	15945883	2R_15945883_INS [dm3] 2R_20058378_INS [dm6]	G	GGC	3.923e^-4	0.911	EXON CR44631	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11939394	X_11939394_INS [dm3] X_12045361_INS [dm6]	A	ATAATGCATGGTA...	3.925e^-4	0.911	INTRON CR43960 & 1 other
2L	9426070	2L_9426070_SNP [dm3] 2L_9426070_SNP [dm6]	T	A	3.930e^-4	0.911	SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
3R	15606147	3R_15606147_SNP [dm3] 3R_19780425_SNP [dm6]	G	A	3.934e^-4	0.911	SYNONYMOUS_CODING CG11391 UPSTREAM CG11407
2L	7331882	2L_7331882_SNP [dm3] 2L_7331882_SNP [dm6]	A	G	3.937e^-4	0.911	INTERGENIC
3L	9219813	3L_9219813_SNP [dm3] 3L_9226713_SNP [dm6]	G	A	3.943e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12369026	2L_12369026_INS [dm3] 2L_12369026_INS [dm6]	G	TTCAC	3.948e^-4	0.911	UPSTREAM bru-2 INTRON bru-2
3R	14437392	3R_14437392_SNP [dm3] 3R_18611670_SNP [dm6]	A	C	3.955e^-4	0.911	INTRON qin & 1 other
3L	2708481	3L_2708481_SNP [dm3] 3L_2708481_SNP [dm6]	C	A	3.957e^-4	0.911	INTRON Fife
2R	18465998	2R_18465998_SNP [dm3] 2R_22578493_SNP [dm6]	A	G	3.958e^-4	0.911	INTRON dnr1
2R	12255973	2R_12255973_SNP [dm3] 2R_16368468_SNP [dm6]	T	A	3.984e^-4	0.911	INTERGENIC
X	10831768	X_10831768_DEL [dm3] X_10937735_DEL [dm6]	GTACGAAAGAACCAAATACT...	CTACAA	3.988e^-4	0.911	INTRON Myo10A
3R	19339025	3R_19339025_SNP [dm3] 3R_23513303_SNP [dm6]	A	G	3.996e^-4	0.911	DOWNSTREAM Irk2 INTERGENIC
2R	1383476	2R_1383476_SNP [dm3] 2R_5495971_SNP [dm6]	G	A	3.998e^-4	0.911	UPSTREAM CG30438 & 1 other INTERGENIC
2L	15060724	2L_15060724_SNP [dm3] 2L_15060724_SNP [dm6]	G	A	3.999e^-4	0.911	UTR_5_PRIME TfIIS UPSTREAM vas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	10190399	X_10190399_SNP [dm3] X_10296366_SNP [dm6]	G	T	4.008e^-4	0.911	INTRON alpha-Man-I
3R	1739600	3R_1739600_SNP [dm3] 3R_5913878_SNP [dm6]	G	A	4.026e^-4	0.911	INTRON CG34113
3R	14335814	3R_14335814_SNP [dm3] 3R_18510092_SNP [dm6]	G	C	4.032e^-4	0.911	INTRON fru
X	20716955	X_20716955_SNP [dm3] X_20845928_SNP [dm6]	G	A	4.037e^-4	0.911	INTRON shakB
2L	6270743	2L_6270743_SNP [dm3] 2L_6270743_SNP [dm6]	A	C	4.042e^-4	0.911	UPSTREAM CR42735 INTRON Ddr
3R	24111878	3R_24111878_SNP [dm3] 3R_28286156_SNP [dm6]	T	C	4.054e^-4	0.911	INTERGENIC
3R	5890747	3R_5890747_SNP [dm3] 3R_10065025_SNP [dm6]	G	C	4.054e^-4	0.911	DOWNSTREAM CG33631 INTERGENIC
2L	13881394	2L_13881394_SNP [dm3] 2L_13881394_SNP [dm6]	C	T	4.058e^-4	0.911	INTRON CenG1A
2R	20783009	2R_20783009_SNP [dm3] 2R_24895486_SNP [dm6]	A	T	4.077e^-4	0.911	INTRON NaCP60E	TF binding site mE1_TFBS_chinmo
3R	5890745	3R_5890745_SNP [dm3] 3R_10065023_SNP [dm6]	A	G	4.083e^-4	0.911	DOWNSTREAM CG33631 INTERGENIC
X	17098104	X_17098104_DEL [dm3] X_17204071_DEL [dm6]	CAGCAAATAT	C	4.121e^-4	0.911	DOWNSTREAM CG5070 INTERGENIC
2R	12549875	2R_12549875_SNP [dm3] 2R_16662370_SNP [dm6]	C	T	4.122e^-4	0.911	INTRON Picot
X	10820909	X_10820909_SNP [dm3] X_10926876_SNP [dm6]	A	G	4.132e^-4	0.911	UPSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11873658	3L_11873658_SNP [dm3] 3L_11880558_SNP [dm6]	G	T	4.134e^-4	0.911	SYNONYMOUS_CODING CG14128 UPSTREAM CCDC151 INTRON CG44837
3R	9698944	3R_9698944_SNP [dm3] 3R_13873222_SNP [dm6]	T	A	4.138e^-4	0.911	INTRON E5	TF binding site mE1_TFBS_cad
3L	10570831	3L_10570831_SNP [dm3] 3L_10577731_SNP [dm6]	A	T	4.149e^-4	0.911	INTRON A2bp1
2L	9318785	2L_9318785_SNP [dm3] 2L_9318785_SNP [dm6]	A	C	4.157e^-4	0.911	INTERGENIC
3L	2180171	3L_2180171_SNP [dm3] 3L_2180171_SNP [dm6]	C	T	4.159e^-4	0.911	INTERGENIC
3L	13262031	3L_13262031_SNP [dm3] 3L_13268931_SNP [dm6]	A	T	4.160e^-4	0.911	INTRON caps
3L	2024582	3L_2024582_SNP [dm3] 3L_2024582_SNP [dm6]	C	G	4.162e^-4	0.911	INTERGENIC
3L	8145679	3L_8145679_SNP [dm3] 3L_8152579_SNP [dm6]	A	G	4.165e^-4	0.911	UPSTREAM CG13676 INTERGENIC
3L	13136752	3L_13136752_SNP [dm3] 3L_13143652_SNP [dm6]	T	C	4.166e^-4	0.911	INTERGENIC
3R	3635685	3R_3635685_SNP [dm3] 3R_7809963_SNP [dm6]	A	C	4.168e^-4	0.911	UTR_5_PRIME CG2993 UPSTREAM CG31472	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	4116790	3L_4116790_SNP [dm3] 3L_4116790_SNP [dm6]	G	C	4.168e^-4	0.911	INTRON Chd64
2R	15086135	2R_15086135_INS [dm3] 2R_19198630_INS [dm6]	T	TAT	4.170e^-4	0.911	INTRON hppy
3L	2549907	3L_2549907_SNP [dm3] 3L_2549907_SNP [dm6]	G	T	4.172e^-4	0.911	INTRON Spn
2R	17830462	2R_17830462_SNP [dm3] 2R_21942957_SNP [dm6]	T	A	4.175e^-4	0.911	INTRON Fili	TF binding site mE1_TFBS_cad
3L	3440302	3L_3440302_SNP [dm3] 3L_3440302_SNP [dm6]	A	G	4.188e^-4	0.911	INTRON eIF5B	TF binding site mE1_TFBS_HSA
3R	20665597	3R_20665597_INS [dm3] 3R_24839875_INS [dm6]	A	AA	4.202e^-4	0.911	UTR_3_PRIME sosie DOWNSTREAM CG33658 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6662944	2R_6662944_SNP [dm3] 2R_10775439_SNP [dm6]	C	T	4.204e^-4	0.911	INTRON CG33144
2L	8095228	2L_8095228_SNP [dm3] 2L_8095228_SNP [dm6]	G	A	4.206e^-4	0.911	INTRON Bsg
3R	10432647	3R_10432647_SNP [dm3] 3R_14606925_SNP [dm6]	A	T	4.207e^-4	0.911	SYNONYMOUS_CODING stumps	TF binding site mE1_TFBS_HSA
2L	17425468	2L_17425468_SNP [dm3] 2L_17425468_SNP [dm6]	C	G	4.209e^-4	0.911	INTRON Dif
3L	1259656	3L_1259656_SNP [dm3] 3L_1259656_SNP [dm6]	G	A	4.214e^-4	0.911	INTRON CG9134
3R	9698962	3R_9698962_SNP [dm3] 3R_13873240_SNP [dm6]	G	T	4.225e^-4	0.911	INTRON E5	TF binding site mE1_TFBS_cad
3L	10771153	3L_10771153_SNP [dm3] 3L_10778053_SNP [dm6]	T	C	4.234e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	13692496	3L_13692496_SNP [dm3] 3L_13699396_SNP [dm6]	A	G	4.242e^-4	0.911	INTRON bru-3
2L	19013431	2L_19013431_SNP [dm3] 2L_19013431_SNP [dm6]	T	G	4.242e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15288556	2R_15288556_SNP [dm3] 2R_19401051_SNP [dm6]	A	G	4.252e^-4	0.911	SYNONYMOUS_CODING hts DOWNSTREAM hts INTRON hts EXON CR43430
2L	12584379	2L_12584379_SNP [dm3] 2L_12584379_SNP [dm6]	C	T	4.254e^-4	0.911	DOWNSTREAM CR44595 INTERGENIC
2L	19241225	2L_19241225_SNP [dm3] 2L_19241225_SNP [dm6]	T	C	4.259e^-4	0.911	INTERGENIC
X	3196867	X_3196867_SNP [dm3] X_3302834_SNP [dm6]	G	T	4.269e^-4	0.911	INTRON dnc
2L	13862885	2L_13862885_SNP [dm3] 2L_13862885_SNP [dm6]	G	A	4.274e^-4	0.911	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	13862886	2L_13862886_SNP [dm3] 2L_13862886_SNP [dm6]	T	C	4.274e^-4	0.911	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	4102895	3L_4102895_SNP [dm3] 3L_4102895_SNP [dm6]	T	C	4.280e^-4	0.911	UTR_5_PRIME CG14995 UPSTREAM CG14995 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14244411	3L_14244411_SNP [dm3] 3L_14251311_SNP [dm6]	A	C	4.282e^-4	0.911	INTERGENIC
X	7457664	X_7457664_SNP [dm3] X_7563631_SNP [dm6]	A	C	4.285e^-4	0.911	UPSTREAM CR44502 INTERGENIC
2R	18264001	2R_18264001_SNP [dm3] 2R_22376496_SNP [dm6]	G	A	4.291e^-4	0.911	SYNONYMOUS_CODING Rtf1	TF binding site mE1_TFBS_sens
2L	14936685	2L_14936685_SNP [dm3] 2L_14936685_SNP [dm6]	T	A	4.296e^-4	0.911	INTRON CG42313
3L	18788125	3L_18788125_SNP [dm3] 3L_18795025_SNP [dm6]	C	T	4.299e^-4	0.911	INTRON ftz-f1
3L	18960785	3L_18960785_SNP [dm3] 3L_18967685_SNP [dm6]	A	C	4.301e^-4	0.911	INTERGENIC
X	10823918	X_10823918_SNP [dm3] X_10929885_SNP [dm6]	A	T	4.312e^-4	0.911	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	17356196	X_17356196_INS [dm3] X_17462163_INS [dm6]	T	TT	4.316e^-4	0.911	INTRON CG43658
3L	12320676	3L_12320676_SNP [dm3] 3L_12327576_SNP [dm6]	C	G	4.327e^-4	0.911	INTERGENIC
3L	4368139	3L_4368139_SNP [dm3] 3L_4368139_SNP [dm6]	T	A	4.328e^-4	0.911	UTR_3_PRIME DopEcR UPSTREAM CG11342 DOWNSTREAM DopEcR	TF binding site mE1_TFBS_sens
X	20717149	X_20717149_DEL [dm3] X_20846122_DEL [dm6]	ACA	A	4.334e^-4	0.911	INTRON shakB	TF binding site BDTNP1_TFBS_twi
3L	2921239	3L_2921239_SNP [dm3] 3L_2921239_SNP [dm6]	A	G	4.334e^-4	0.911	INTRON Shab
3L	13136341	3L_13136341_SNP [dm3] 3L_13143241_SNP [dm6]	A	C	4.338e^-4	0.911	INTERGENIC
3R	16990783	3R_16990783_SNP [dm3] 3R_21165061_SNP [dm6]	A	T	4.341e^-4	0.911	NON_SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma
3L	14678703	3L_14678703_SNP [dm3] 3L_14685603_SNP [dm6]	C	G	4.352e^-4	0.911	SYNONYMOUS_CODING CG5048 INTRON ome
3L	5986672	3L_5986672_INS [dm3] 3L_5993572_INS [dm6]	G	GGG	4.356e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21531497	3R_21531497_SNP [dm3] 3R_25705775_SNP [dm6]	T	A	4.362e^-4	0.911	INTRON LpR2
2R	9628085	2R_9628085_SNP [dm3] 2R_13740580_SNP [dm6]	C	A	4.363e^-4	0.911	INTRON fas
3L	19454383	3L_19454383_SNP [dm3] 3L_19461283_SNP [dm6]	C	T	4.365e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23598656	3R_23598656_SNP [dm3] 3R_27772934_SNP [dm6]	G	C	4.376e^-4	0.911	INTRON CG34353
3L	14092535	3L_14092535_SNP [dm3] 3L_14099435_SNP [dm6]	G	C	4.381e^-4	0.911	INTERGENIC
2L	764792	2L_764792_SNP [dm3] 2L_764792_SNP [dm6]	T	C	4.384e^-4	0.911	INTERGENIC
3R	8578741	3R_8578741_SNP [dm3] 3R_12753019_SNP [dm6]	C	G	4.387e^-4	0.911	INTRON beat-Vc
3R	839019	3R_839019_SNP [dm3] 3R_5013297_SNP [dm6]	G	C	4.395e^-4	0.911	INTERGENIC
3L	5214005	3L_5214005_SNP [dm3] 3L_5220905_SNP [dm6]	C	G	4.398e^-4	0.911	INTRON shep
2R	13088847	2R_13088847_SNP [dm3] 2R_17201342_SNP [dm6]	C	T	4.399e^-4	0.911	INTERGENIC
2R	20119552	2R_20119552_SNP [dm3] 2R_24232029_SNP [dm6]	G	A	4.403e^-4	0.911	INTERGENIC
3L	8564428	3L_8564428_SNP [dm3] 3L_8571328_SNP [dm6]	T	C	4.415e^-4	0.911	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea UPSTREAM mir-190 DOWNSTREAM rhea	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11795843	3L_11795843_SNP [dm3] 3L_11802743_SNP [dm6]	C	T	4.417e^-4	0.911	SYNONYMOUS_CODING CG42255
3L	12515345	3L_12515345_SNP [dm3] 3L_12522245_SNP [dm6]	A	G	4.418e^-4	0.911	SYNONYMOUS_CODING Gcn5	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17803688	2R_17803688_SNP [dm3] 2R_21916183_SNP [dm6]	G	A	4.421e^-4	0.911	INTRON Fili
2R	20821423	2R_20821423_SNP [dm3] 2R_24933900_SNP [dm6]	A	T	4.443e^-4	0.911	INTRON CG30427
X	5821020	X_5821020_DEL [dm3] X_5926987_DEL [dm6]	TT	T	4.445e^-4	0.911	INTRON CG3726
3R	15240778	3R_15240778_SNP [dm3] 3R_19415056_SNP [dm6]	T	G	4.453e^-4	0.911	INTRON CG31221
2L	7163250	2L_7163250_SNP [dm3] 2L_7163250_SNP [dm6]	A	G	4.469e^-4	0.911	INTERGENIC
X	7717869	X_7717869_DEL [dm3] X_7823836_DEL [dm6]	CGCCACCGTGACCCC...	C	4.477e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19511678	2R_19511678_SNP [dm3] 2R_23624155_SNP [dm6]	C	G	4.481e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	1844320	2L_1844320_SNP [dm3] 2L_1844320_SNP [dm6]	C	G	4.483e^-4	0.911	NON_SYNONYMOUS_CODING wry	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3378438	X_3378438_SNP [dm3] X_3484405_SNP [dm6]	G	T	4.485e^-4	0.911	SYNONYMOUS_CODING CG10802 DOWNSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	1745389	2R_1745389_SNP [dm3] 2R_5857884_SNP [dm6]	A	T	4.491e^-4	0.911	INTRON dpr12
3R	2811300	3R_2811300_SNP [dm3] 3R_6985578_SNP [dm6]	T	C	4.493e^-4	0.911	INTRON Antp
2L	18994126	2L_18994126_SNP [dm3] 2L_18994126_SNP [dm6]	T	C	4.493e^-4	0.911	INTRON CG10650	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2602551	2R_2602551_SNP [dm3] 2R_6715046_SNP [dm6]	C	T	4.494e^-4	0.911	INTRON CG3409 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17432579	2R_17432579_SNP [dm3] 2R_21545074_SNP [dm6]	T	C	4.495e^-4	0.911	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10823904	X_10823904_DEL [dm3] X_10929871_DEL [dm6]	TGTTAA	T	4.519e^-4	0.911	UPSTREAM Myo10A DOWNSTREAM CG2145 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	6662945	2R_6662945_SNP [dm3] 2R_10775440_SNP [dm6]	G	A	4.526e^-4	0.911	INTRON CG33144
2L	12147420	2L_12147420_SNP [dm3] 2L_12147420_SNP [dm6]	A	G	4.526e^-4	0.911	INTRON CG31760
X	18430234	X_18430234_SNP [dm3] X_18536201_SNP [dm6]	C	A	4.532e^-4	0.911	INTRON Bx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16990660	3R_16990660_SNP [dm3] 3R_21164938_SNP [dm6]	C	T	4.533e^-4	0.911	SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma
X	9685634	X_9685634_SNP [dm3] X_9791601_SNP [dm6]	C	T	4.536e^-4	0.911	INTRON CG32698
3L	11119889	3L_11119889_DEL [dm3] 3L_11126789_DEL [dm6]	GT	G	4.537e^-4	0.911	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18005198	2R_18005198_SNP [dm3] 2R_22117693_SNP [dm6]	C	T	4.543e^-4	0.911	INTRON Vrp1
2L	14501414	2L_14501414_SNP [dm3] 2L_14501414_SNP [dm6]	G	A	4.551e^-4	0.911	INTERGENIC
2R	16722911	2R_16722911_DEL [dm3] 2R_20835406_DEL [dm6]	TTTGTGAGGCT...	T	4.555e^-4	0.911	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14923707	3L_14923707_SNP [dm3] 3L_14930607_SNP [dm6]	T	G	4.558e^-4	0.911	INTRON DCX-EMAP
2R	19509772	2R_19509772_SNP [dm3] 2R_23622249_SNP [dm6]	G	A	4.573e^-4	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7264243	X_7264243_SNP [dm3] X_7370210_SNP [dm6]	A	G	4.578e^-4	0.911	INTRON CG1677 & 1 other
X	5253202	X_5253202_SNP [dm3] X_5359169_SNP [dm6]	C	T	4.582e^-4	0.911	INTRON SK
2L	4111045	2L_4111045_SNP [dm3] 2L_4111045_SNP [dm6]	C	A	4.603e^-4	0.911	INTRON ed	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8853839	3R_8853839_SNP [dm3] 3R_13028117_SNP [dm6]	T	A	4.612e^-4	0.911	SYNONYMOUS_CODING CG12360 DOWNSTREAM CG12360	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13087287	X_13087287_SNP [dm3] X_13193254_SNP [dm6]	C	T	4.619e^-4	0.911	UTR_3_PRIME CG2453
X	16599161	X_16599161_SNP [dm3] X_16705128_SNP [dm6]	G	C	4.620e^-4	0.911	SYNONYMOUS_CODING CG4653 DOWNSTREAM CG9672 INTRON CG4678
3R	24816968	3R_24816968_SNP [dm3] 3R_28991246_SNP [dm6]	T	C	4.637e^-4	0.911	INTERGENIC
2R	7447027	2R_7447027_SNP [dm3] 2R_11559522_SNP [dm6]	A	G	4.643e^-4	0.911	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10819156	X_10819156_SNP [dm3] X_10925123_SNP [dm6]	G	T	4.659e^-4	0.911	SYNONYMOUS_CODING v
3L	6570133	3L_6570133_SNP [dm3] 3L_6577033_SNP [dm6]	C	G	4.673e^-4	0.911	INTRON CG18769 & 1 other
2R	8443267	2R_8443267_SNP [dm3] 2R_12555762_SNP [dm6]	A	T	4.681e^-4	0.911	INTRON fra
X	12481163	X_12481163_SNP [dm3] X_12587130_SNP [dm6]	T	G	4.682e^-4	0.911	NON_SYNONYMOUS_CODING LIMK1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12264955	X_12264955_DEL [dm3] X_12370922_DEL [dm6]	CC	C	4.685e^-4	0.911	INTERGENIC
X	6709683	X_6709683_SNP [dm3] X_6815650_SNP [dm6]	A	G	4.694e^-4	0.911	SYNONYMOUS_CODING iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10847293	X_10847293_SNP [dm3] X_10953260_SNP [dm6]	T	A	4.704e^-4	0.911	UPSTREAM Rab9Fb & 1 other INTRON Myo10A
3L	4274549	3L_4274549_SNP [dm3] 3L_4274549_SNP [dm6]	G	A	4.713e^-4	0.911	SYNONYMOUS_CODING CG1273
3R	25782502	3R_25782502_SNP [dm3] 3R_29956780_SNP [dm6]	G	A	4.714e^-4	0.911	INTRON TkR99D
X	9764608	X_9764608_SNP [dm3] X_9870575_SNP [dm6]	G	T	4.715e^-4	0.911	DOWNSTREAM CG45061 INTERGENIC
3R	1560310	3R_1560310_SNP [dm3] 3R_5734588_SNP [dm6]	C	A	4.731e^-4	0.911	SYNONYMOUS_CODING CG1239 DOWNSTREAM CG2100
3L	16706076	3L_16706076_SNP [dm3] 3L_16712976_SNP [dm6]	C	T	4.733e^-4	0.911	UPSTREAM Dab INTRON Dab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
X	10842055	X_10842055_SNP [dm3] X_10948022_SNP [dm6]	T	A	4.735e^-4	0.911	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3438581	3L_3438581_SNP [dm3] 3L_3438581_SNP [dm6]	T	A	4.747e^-4	0.911	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18906794	2L_18906794_SNP [dm3] 2L_18906794_SNP [dm6]	A	C	4.747e^-4	0.911	DOWNSTREAM CR44738 INTERGENIC
2R	11433944	2R_11433944_SNP [dm3] 2R_15546439_SNP [dm6]	C	A	4.749e^-4	0.911	INTRON CG8192
2L	9426039	2L_9426039_SNP [dm3] 2L_9426039_SNP [dm6]	G	A	4.750e^-4	0.911	NON_SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
3R	22201625	3R_22201625_SNP [dm3] 3R_26375903_SNP [dm6]	C	T	4.762e^-4	0.911	INTERGENIC
2L	6888096	2L_6888096_SNP [dm3] 2L_6888096_SNP [dm6]	G	T	4.768e^-4	0.911	INTRON Nlg2	TF binding site mE1_TFBS_chinmo
3R	9757098	3R_9757098_SNP [dm3] 3R_13931376_SNP [dm6]	A	C	4.769e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14924381	2L_14924381_SNP [dm3] 2L_14924381_SNP [dm6]	G	C	4.770e^-4	0.911	UPSTREAM CG3491 INTRON CG42313
3L	7196786	3L_7196786_SNP [dm3] 3L_7203686_SNP [dm6]	G	A	4.787e^-4	0.911	INTERGENIC
3R	14447125	3R_14447125_SNP [dm3] 3R_18621403_SNP [dm6]	C	G	4.789e^-4	0.911	UPSTREAM CG14304 INTRON qin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19445832	2R_19445832_SNP [dm3] 2R_23558309_SNP [dm6]	G	C	4.792e^-4	0.911	SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1327746	3R_1327746_SNP [dm3] 3R_5502024_SNP [dm6]	A	G	4.804e^-4	0.911	INTRON CG31547	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15184948	X_15184948_SNP [dm3] X_15290915_SNP [dm6]	A	C	4.805e^-4	0.911	DOWNSTREAM CR44664 INTERGENIC
X	9168817	X_9168817_SNP [dm3] X_9274784_SNP [dm6]	T	C	4.807e^-4	0.911	DOWNSTREAM c11.1 INTRON CG16892 EXON snoRNA:CG16892-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	20710877	3R_20710877_SNP [dm3] 3R_24885155_SNP [dm6]	C	T	4.810e^-4	0.911	INTRON CG31121	TF binding site mE1_TFBS_chinmo
3L	2996242	3L_2996242_MNP [dm3] 3L_2996242_MNP [dm6]	GTG	AAC	4.815e^-4	0.911	DOWNSTREAM CG2113 INTERGENIC
2R	20759963	2R_20759963_SNP [dm3] 2R_24872440_SNP [dm6]	A	C	4.818e^-4	0.911	NON_SYNONYMOUS_CODING CG16896 DOWNSTREAM Atf-2	TF binding site mE1_TFBS_sens
3L	20918265	3L_20918265_SNP [dm3] 3L_20925165_SNP [dm6]	G	C	4.819e^-4	0.911	DOWNSTREAM fng INTERGENIC
2R	20790619	2R_20790619_SNP [dm3] 2R_24903096_SNP [dm6]	A	G	4.823e^-4	0.911	DOWNSTREAM RpL41 INTRON NaCP60E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2R	16748952	2R_16748952_SNP [dm3] 2R_20861447_SNP [dm6]	C	T	4.826e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13966942	3L_13966942_SNP [dm3] 3L_13973842_SNP [dm6]	A	G	4.829e^-4	0.911	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18931631	3L_18931631_SNP [dm3] 3L_18938531_SNP [dm6]	G	C	4.830e^-4	0.911	INTRON CG32204	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3705801	3L_3705801_SNP [dm3] 3L_3705801_SNP [dm6]	G	T	4.832e^-4	0.911	INTERGENIC
2L	7603853	2L_7603853_SNP [dm3] 2L_7603853_SNP [dm6]	T	C	4.838e^-4	0.911	UPSTREAM CR45370 INTERGENIC
3L	1264916	3L_1264916_SNP [dm3] 3L_1264916_SNP [dm6]	C	T	4.838e^-4	0.911	UPSTREAM CG9134 INTRON CG9134
2R	19892518	2R_19892518_SNP [dm3] 2R_24004995_SNP [dm6]	C	T	4.840e^-4	0.911	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14924542	2L_14924542_DEL [dm3] 2L_14924542_DEL [dm6]	TGCCCT	T	4.853e^-4	0.911	UPSTREAM CG3491 INTRON CG42313
3L	3440286	3L_3440286_SNP [dm3] 3L_3440286_SNP [dm6]	A	T	4.862e^-4	0.911	INTRON eIF5B	TF binding site mE1_TFBS_HSA
3L	3440355	3L_3440355_SNP [dm3] 3L_3440355_SNP [dm6]	G	A	4.862e^-4	0.911	INTRON eIF5B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9470082	2L_9470082_SNP [dm3] 2L_9470082_SNP [dm6]	T	C	4.867e^-4	0.911	UPSTREAM CR43769 INTERGENIC
2L	7293605	2L_7293605_SNP [dm3] 2L_7293605_SNP [dm6]	G	C	4.879e^-4	0.911	INTERGENIC	regulatory region REDfly_CRMs
3R	22198507	3R_22198507_SNP [dm3] 3R_26372785_SNP [dm6]	G	A	4.897e^-4	0.911	INTERGENIC
X	12407408	X_12407408_SNP [dm3] X_12513375_SNP [dm6]	T	A	4.905e^-4	0.911	INTRON CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10013626	2R_10013626_SNP [dm3] 2R_14126121_SNP [dm6]	A	G	4.908e^-4	0.911	INTRON Prosap
X	20718184	X_20718184_SNP [dm3] X_20847157_SNP [dm6]	T	C	4.930e^-4	0.911	INTRON shakB	TF binding site mE1_TFBS_Kr
3L	13661089	3L_13661089_SNP [dm3] 3L_13667989_SNP [dm6]	G	A	4.942e^-4	0.911	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	16729966	3R_16729966_SNP [dm3] 3R_20904244_SNP [dm6]	A	T	4.944e^-4	0.911	DOWNSTREAM TotX INTRON CG5621
2L	12294875	2L_12294875_SNP [dm3] 2L_12294875_SNP [dm6]	G	A	4.945e^-4	0.911	INTRON aret
2R	6628742	2R_6628742_SNP [dm3] 2R_10741237_SNP [dm6]	A	G	4.959e^-4	0.911	SPLICE_SITE_REGION CG33144 INTRON CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	3565457	3R_3565457_SNP [dm3] 3R_7739735_SNP [dm6]	C	G	4.962e^-4	0.911	UPSTREAM CR44935 & 1 other INTERGENIC
3L	23049469	3L_23049469_SNP [dm3] 3L_23056369_SNP [dm6]	C	T	4.963e^-4	0.911	INTERGENIC	transposable element FlyBase
3R	5503024	3R_5503024_SNP [dm3] 3R_9677302_SNP [dm6]	C	T	4.967e^-4	0.911	SYNONYMOUS_CODING CG8358 UPSTREAM CG16817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	20388834	3R_20388834_SNP [dm3] 3R_24563112_SNP [dm6]	T	G	4.979e^-4	0.911	INTRON CG13624
2R	13381542	2R_13381542_INS [dm3] 2R_17494037_INS [dm6]	T	TATTT	4.980e^-4	0.911	SPLICE_SITE_REGION CG30103 DOWNSTREAM NT5E-2 INTRON CG30103	TF binding site mE1_TFBS_HSA
2L	14501500	2L_14501500_SNP [dm3] 2L_14501500_SNP [dm6]	G	C	4.981e^-4	0.911	INTERGENIC
2L	7603852	2L_7603852_SNP [dm3] 2L_7603852_SNP [dm6]	T	G	4.992e^-4	0.911	UPSTREAM CR45370 INTERGENIC
3L	9211052	3L_9211052_SNP [dm3] 3L_9217952_SNP [dm6]	G	A	4.998e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	6888750	2L_6888750_SNP [dm3] 2L_6888750_SNP [dm6]	G	A	5.009e^-4	0.911	INTRON Nlg2
2L	6416073	2L_6416073_SNP [dm3] 2L_6416073_SNP [dm6]	A	G	5.012e^-4	0.911	SYNONYMOUS_CODING Tig DOWNSTREAM CG13982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7264374	X_7264374_DEL [dm3] X_7370341_DEL [dm6]	TTTAAAAAC	T	5.015e^-4	0.911	INTRON CG1677 & 1 other
X	20716957	X_20716957_SNP [dm3] X_20845930_SNP [dm6]	C	A	5.022e^-4	0.911	INTRON shakB
X	20187501	X_20187501_DEL [dm3] X_20316474_DEL [dm6]	CGC	C	5.028e^-4	0.911	UPSTREAM CG1504 INTRON CG1504
3R	8794236	3R_8794236_SNP [dm3] 3R_12968514_SNP [dm6]	T	C	5.034e^-4	0.911	UPSTREAM CG14384 & 1 other INTRON CG7381	TF binding site mE1_TFBS_cad
2L	18065467	2L_18065467_SNP [dm3] 2L_18065467_SNP [dm6]	A	T	5.044e^-4	0.911	INTRON rdo
2R	17349648	2R_17349648_SNP [dm3] 2R_21462143_SNP [dm6]	T	G	5.064e^-4	0.911	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2R	14554667	2R_14554667_SNP [dm3] 2R_18667162_SNP [dm6]	C	G	5.072e^-4	0.911	DOWNSTREAM edl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18479331	3L_18479331_SNP [dm3] 3L_18486231_SNP [dm6]	T	G	5.072e^-4	0.911	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2
2R	20832415	2R_20832415_SNP [dm3] 2R_24944892_SNP [dm6]	T	G	5.079e^-4	0.911	UPSTREAM CG3770 & 1 other INTRON CG15861	TF binding site mE1_TFBS_Trl
3R	25218171	3R_25218171_SNP [dm3] 3R_29392449_SNP [dm6]	G	T	5.082e^-4	0.911	INTRON Ptp99A
2R	7956601	2R_7956601_SNP [dm3] 2R_12069096_SNP [dm6]	C	T	5.090e^-4	0.911	INTRON CG8888	TF binding site BDTNP1_TFBS_sna
3L	2124844	3L_2124844_SNP [dm3] 3L_2124844_SNP [dm6]	T	A	5.119e^-4	0.911	INTRON zormin
3L	13966953	3L_13966953_SNP [dm3] 3L_13973853_SNP [dm6]	C	T	5.129e^-4	0.911	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	13966955	3L_13966955_SNP [dm3] 3L_13973855_SNP [dm6]	C	A	5.129e^-4	0.911	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5258753	3L_5258753_SNP [dm3] 3L_5265653_SNP [dm6]	A	T	5.130e^-4	0.911	INTRON shep
3L	1703501	3L_1703501_SNP [dm3] 3L_1703501_SNP [dm6]	C	T	5.134e^-4	0.911	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1703505	3L_1703505_SNP [dm3] 3L_1703505_SNP [dm6]	T	A	5.134e^-4	0.911	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20813517	2R_20813517_SNP [dm3] 2R_24925994_SNP [dm6]	A	G	5.138e^-4	0.911	INTRON pain
3L	2916123	3L_2916123_SNP [dm3] 3L_2916123_SNP [dm6]	T	G	5.147e^-4	0.911	NON_SYNONYMOUS_CODING CG9970 INTRON Shab
2L	16400447	2L_16400447_SNP [dm3] 2L_16400447_SNP [dm6]	T	A	5.148e^-4	0.911	UTR_3_PRIME CG5888
2R	2570312	2R_2570312_SNP [dm3] 2R_6682807_SNP [dm6]	G	A	5.154e^-4	0.911	UPSTREAM CG15909 DOWNSTREAM CR44164 INTRON CG9422 EXON CR44165
3R	3075301	3R_3075301_SNP [dm3] 3R_7249579_SNP [dm6]	A	T	5.167e^-4	0.911	UTR_5_PRIME CG1227 UPSTREAM CG10050 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9135972	3L_9135972_SNP [dm3] 3L_9142872_SNP [dm6]	A	T	5.170e^-4	0.911	UTR_3_PRIME nwk DOWNSTREAM nwk INTRON nwk
2L	9604981	2L_9604981_SNP [dm3] 2L_9604981_SNP [dm6]	A	G	5.174e^-4	0.911	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da
2R	11976353	2R_11976353_SNP [dm3] 2R_16088848_SNP [dm6]	T	G	5.175e^-4	0.911	INTRON Dg
X	9266289	X_9266289_SNP [dm3] X_9372256_SNP [dm6]	G	A	5.178e^-4	0.911	SYNONYMOUS_CODING mgl	TF binding site mE1_TFBS_sens
2L	14751044	2L_14751044_SNP [dm3] 2L_14751044_SNP [dm6]	G	A	5.181e^-4	0.911	INTERGENIC
3R	8813896	3R_8813896_SNP [dm3] 3R_12988174_SNP [dm6]	A	C	5.217e^-4	0.911	NON_SYNONYMOUS_CODING CG14383 INTRON CG31342	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18381461	X_18381461_SNP [dm3] X_18487428_SNP [dm6]	A	T	5.220e^-4	0.911	UPSTREAM psh DOWNSTREAM CG15046 INTERGENIC
2L	15903038	2L_15903038_INS [dm3] 2L_15903038_INS [dm6]	T	TT	5.228e^-4	0.911	UPSTREAM CG31821 INTERGENIC
3R	13480735	3R_13480735_SNP [dm3] 3R_17655013_SNP [dm6]	G	C	5.234e^-4	0.911	INTRON CG14322	silencer mE1_HDAC_PRE
2R	13434810	2R_13434810_SNP [dm3] 2R_17547305_SNP [dm6]	A	T	5.237e^-4	0.911	UPSTREAM MESR4 DOWNSTREAM cyp33 INTRON RpL18A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18753775	3L_18753775_SNP [dm3] 3L_18760675_SNP [dm6]	A	T	5.246e^-4	0.911	INTRON ftz-f1	TF binding site mE1_TFBS_Trl
2R	15911269	2R_15911269_SNP [dm3] 2R_20023764_SNP [dm6]	G	A	5.247e^-4	0.911	INTERGENIC
3R	9698544	3R_9698544_SNP [dm3] 3R_13872822_SNP [dm6]	C	G	5.247e^-4	0.911	INTRON E5
2R	6266409	2R_6266409_SNP [dm3] 2R_10378904_SNP [dm6]	T	C	5.251e^-4	0.911	NON_SYNONYMOUS_CODING Ir47a INTRON CG42732	TF binding site mE1_TFBS_sens
2L	6594040	2L_6594040_DEL [dm3] 2L_6594040_DEL [dm6]	AATTTT	A	5.276e^-4	0.911	INTRON CG11319
2L	6594050	2L_6594050_DEL [dm3] 2L_6594050_DEL [dm6]	GCTCTCTA	G	5.276e^-4	0.911	INTRON CG11319
3L	14509446	3L_14509446_DEL [dm3] 3L_14516346_DEL [dm6]	GTAACAAAAACACTCG...	G	5.280e^-4	0.911	INTRON bbg
3L	14243491	3L_14243491_SNP [dm3] 3L_14250391_SNP [dm6]	A	G	5.290e^-4	0.911	INTERGENIC
2R	12413159	2R_12413159_SNP [dm3] 2R_16525654_SNP [dm6]	T	A	5.291e^-4	0.911	INTRON Sema-2a
2L	8761132	2L_8761132_SNP [dm3] 2L_8761132_SNP [dm6]	T	C	5.291e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	16614322	X_16614322_SNP [dm3] X_16720289_SNP [dm6]	C	T	5.294e^-4	0.911	UPSTREAM CG32572 INTRON CG34325
2L	925385	2L_925385_SNP [dm3] 2L_925385_SNP [dm6]	C	A	5.295e^-4	0.911	INTRON CG4341	TF binding site mE1_TFBS_chinmo
X	18472529	X_18472529_DEL [dm3] X_18578496_DEL [dm6]	GC	G	5.304e^-4	0.911	INTERGENIC
2R	18234071	2R_18234071_SNP [dm3] 2R_22346566_SNP [dm6]	A	T	5.306e^-4	0.911	INTRON Liprin-gamma
X	5968558	X_5968558_SNP [dm3] X_6074525_SNP [dm6]	T	C	5.308e^-4	0.911	INTRON Tsp5D
3L	13966910	3L_13966910_SNP [dm3] 3L_13973810_SNP [dm6]	T	C	5.312e^-4	0.911	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9686630	X_9686630_SNP [dm3] X_9792597_SNP [dm6]	C	T	5.316e^-4	0.911	INTRON CG32698
2L	9945882	2L_9945882_SNP [dm3] 2L_9945882_SNP [dm6]	C	T	5.324e^-4	0.911	INTRON CG5853	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3450551	3L_3450551_SNP [dm3] 3L_3450551_SNP [dm6]	A	G	5.325e^-4	0.911	INTRON eIF5B
2R	19255295	2R_19255295_SNP [dm3] 2R_23367772_SNP [dm6]	A	G	5.333e^-4	0.911	SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14403088	2R_14403088_SNP [dm3] 2R_18515583_SNP [dm6]	T	C	5.334e^-4	0.911	INTRON CG43066
3R	5793869	3R_5793869_SNP [dm3] 3R_9968147_SNP [dm6]	T	C	5.339e^-4	0.911	INTRON Glut4EF
2L	8316214	2L_8316214_SNP [dm3] 2L_8316214_SNP [dm6]	G	A	5.342e^-4	0.911	SYNONYMOUS_CODING CG7806 DOWNSTREAM mtsh
3L	19421856	3L_19421856_SNP [dm3] 3L_19428756_SNP [dm6]	G	A	5.346e^-4	0.911	INTERGENIC
3L	3440269	3L_3440269_SNP [dm3] 3L_3440269_SNP [dm6]	G	T	5.353e^-4	0.911	INTRON eIF5B	TF binding site mE1_TFBS_HSA
2R	4616788	2R_4616788_SNP [dm3] 2R_8729283_SNP [dm6]	C	T	5.362e^-4	0.911	SYNONYMOUS_CODING CG30356 DOWNSTREAM stmA & 1 other
2R	19549408	2R_19549408_SNP [dm3] 2R_23661885_SNP [dm6]	G	A	5.362e^-4	0.911	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20718349	3R_20718349_SNP [dm3] 3R_24892627_SNP [dm6]	G	A	5.365e^-4	0.911	UPSTREAM CG31121 INTRON CG31121
3R	21073361	3R_21073361_SNP [dm3] 3R_25247639_SNP [dm6]	A	G	5.367e^-4	0.911	UPSTREAM Nup37 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	14437372	3R_14437372_SNP [dm3] 3R_18611650_SNP [dm6]	A	T	5.367e^-4	0.911	INTRON qin & 1 other
2L	18046566	2L_18046566_SNP [dm3] 2L_18046566_SNP [dm6]	A	G	5.379e^-4	0.911	INTRON rdo
3R	25410182	3R_25410182_SNP [dm3] 3R_29584460_SNP [dm6]	C	A	5.380e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22261241	3R_22261241_SNP [dm3] 3R_26435519_SNP [dm6]	C	A	5.402e^-4	0.911	INTERGENIC
X	20615337	X_20615337_SNP [dm3] X_20744310_SNP [dm6]	G	A	5.407e^-4	0.911	DOWNSTREAM CG15452 INTERGENIC
2R	10929832	2R_10929832_SNP [dm3] 2R_15042327_SNP [dm6]	G	A	5.407e^-4	0.911	DOWNSTREAM hbs INTERGENIC
2L	16785103	2L_16785103_SNP [dm3] 2L_16785103_SNP [dm6]	A	G	5.441e^-4	0.911	SYNONYMOUS_CODING Mhc	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	4602048	3R_4602048_SNP [dm3] 3R_8776326_SNP [dm6]	A	G	5.444e^-4	0.911	SYNONYMOUS_CODING Pif1B UTR_3_PRIME Pif1A	TF binding site mE1_TFBS_HSA
2L	7818713	2L_7818713_SNP [dm3] 2L_7818713_SNP [dm6]	C	T	5.453e^-4	0.911	SYNONYMOUS_CODING LanB1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17831690	2R_17831690_SNP [dm3] 2R_21944185_SNP [dm6]	C	T	5.454e^-4	0.911	SYNONYMOUS_CODING Fili	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9962451	2L_9962451_SNP [dm3] 2L_9962451_SNP [dm6]	T	A	5.455e^-4	0.911	DOWNSTREAM CR43683 INTRON CG5850	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	1444757	3L_1444757_SNP [dm3] 3L_1444757_SNP [dm6]	G	T	5.459e^-4	0.911	INTRON Ptp61F
3R	14641455	3R_14641455_SNP [dm3] 3R_18815733_SNP [dm6]	T	G	5.466e^-4	0.911	INTRON CG18208
2L	7331749	2L_7331749_SNP [dm3] 2L_7331749_SNP [dm6]	G	A	5.482e^-4	0.911	INTERGENIC
3R	5719396	3R_5719396_DEL [dm3] 3R_9893674_DEL [dm6]	TGGCCATTCAAACCGATT...	T	5.484e^-4	0.911	INTRON Glut4EF
2R	12025880	2R_12025880_SNP [dm3] 2R_16138375_SNP [dm6]	A	G	5.486e^-4	0.911	UTR_5_PRIME Got1 UPSTREAM Got1 DOWNSTREAM spin
3L	8564205	3L_8564205_SNP [dm3] 3L_8571105_SNP [dm6]	C	G	5.492e^-4	0.911	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_chinmo
3L	8564233	3L_8564233_SNP [dm3] 3L_8571133_SNP [dm6]	A	T	5.492e^-4	0.911	UPSTREAM mir-190 DOWNSTREAM rhea INTRON rhea	TF binding site mE1_TFBS_chinmo
3L	14246254	3L_14246254_SNP [dm3] 3L_14253154_SNP [dm6]	A	C	5.493e^-4	0.911	INTERGENIC	TF binding site mE1_TFBS_cnc

By genomic position
Variant impact
Gene name

HSC70_4_CT phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results